##maf version=1 scoring=roast.v3.3
a score=602.000000
s hg38.chr15_KI270851v1_alt      0 3 +    263054 GAA
s macFas5.chrUn_KE145882     32868 3 +    808388 gga
i macFas5.chrUn_KE145882    N 0 C 0
s calJac3.chr10             199156 3 - 132174527 gaa
i calJac3.chr10             N 0 C 0

a score=76088.000000
s hg38.chr15_KI270851v1_alt      3 279 +    263054 TTcctaatctcctatttatttata--tttttgtgaattggaattaaccctttatgctgtatattctgttgatttcaacaaattcat---atcacatatttaccattataatattatacataatactttcatcacccttttaaatct---attttttacccattttcatcatctcctt---aaatttctcgcaaatacagaatc------------ac--tttgt---gtgtttggacttctccagaatatcaaataaataa-----catatta---tgtagctttttcagacttgtttctttcacttaacaatat
s macFas5.chrUn_KE145882     32871 300 +    808388 tccttaatctcttatttacttttaattttttataaagtaagatctagacttcctgctgtacattgtgtggaatttgacaaatttatgacatcacatatctaccactgcagtattacatgtgataattttgtcatcctttaaagtcttctattttttacacattctcgccttctaccc---aaattcctagcaaatacaaatttc-------ttttac--tttgtttaatgtttggccttctccagattatcagataaattaaattatatattg---tgtagctttatcagactggtttattttacctaaaaatat
i macFas5.chrUn_KE145882    C 0 C 0
s calJac3.chr10             199159 285 - 132174527 ttcctaatctcctatttattttta-ttttttatgaattagaattaaccctttgagctgcatgttgtgtaggtttcaacaaattcat---atcacgtatctaccattacaatattata---aatacttcaatcg-cctttgaaatctccta-tttttacccattttcatcatcttctt---agatttcttgtaaatacaaattc--------atgtaa--tttgt---atgtttgggtttctccggaatatcaaataaataa-----aataacatattatagctttttcagacacgtttctttcactcaacaatat
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376           10864 293 +    130757 ttcataatctcttactcactttta-atttttgtagagtaagatctagccttcatgctgtatagtctatgggttttgacaaattcatgagatcacatatctaccattgcaatattatacataatagttttgtcatcctttaaagccttctactttttacccattcaaactatcttcttgccagattcctggcaaatacaaaattcctggcaaatacaaactttgtttaatgtttagccatctccagattagcaaataaataa-----tgtatta---tgtagctttatcag-------------atttaacaatac
i saiBol1.JH378376          N 0 C 0

a score=476.000000
s hg38.chr15_KI270851v1_alt    282 1 +    263054 g
s macFas5.chrUn_KE145882     33171 1 +    808388 g
i macFas5.chrUn_KE145882    C 0 C 0
s chlSab2.chr24             468968 1 -  84932903 g
i chlSab2.chr24             N 0 C 0
s calJac3.chr10             199444 1 - 132174527 g
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376           11157 1 +    130757 a
i saiBol1.JH378376          C 0 C 0

a score=618015.000000
s hg38.chr15_KI270851v1_alt       283 286 +    263054 catttaaaattcatttatgtatttttatggtttgatagctcttgtttataattgctga---atattattctatg-----aatttaccgccgactgtttatctactcacctaca---gaacttcttgagtgttcctagttttgac-a-aatatgaatgaacttactgtgattattcatgtgtagttttctttgtggtcatacattgaaagtcagatagataaatacctaggagcatgggtgctggattgcatgccaaaactatgttgagatttgACTGAATTTGCCTCCTAGAATTTCTG
s rheMac8.chr7              169241320 277 + 169600520 cattttaaattcatttatgtatattcatggtttgatagctcttgtttataattgttga---atactactctatg-----aatttaccactga----ttatctactcacctata---gaacttcttgagtgttgctagttttgat-a-aatatgaatgagcttattgtgattattcatgtgtactttc-----tggtcatacatttaaagtcagatagagaaatacctagaagcatgactgctggattgcatgtcaaaaccatattaagatttgacggaatttgccTCCTATAATTTCTG
i rheMac8.chr7              N 0 C 0
s macFas5.chrUn_KE145882        33172 287 +    808388 catttaagtttcattcatgtgctttcgtgatttgatagctgttctttataatggcaaaattattccattatgtg-----aatgtacca--ga----ttgtttattcacctacagacgaactttttgaaggtttatagttttgggaa-aatataaatgaagctattgtaattactcatgtgtgcttttctttgtggacatacttttaaagtcagttagataaacacttaaaagcatgattgctggattgcatagtcaaagtgtgttagaatttgactaaaattgccTCCTAGTAGTTGTG
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       209659 277 -   3745747 cattttaaattcatttatgtatattcatggtttgatagctcttgtttataattgttga---atactattctatg-----aatttaccactga----ttatctactcacctata---gaacttcttgagtgttgctagttttgat-a-aatatgaatgagcttattgtgattattcatgtgtactttc-----tggtcatacatttaaagtcagatagagaaatacctagaagcatgactgctggattgcatgtcaaaaccatattaagatttgacggaatttgccTCCTATAATTTCTG
i macNem1.NW_012011211v1    N 0 C 0
s cerAty1.NW_012003680v1       539998 275 +    767749 cattttaaattcatttatgtatattcatggtttgatagc--ttgtttataattgttga---atactattctacg-----aatttaccactga----ttatctactcacctata---gaacttcttgagtgttcctagttttgac-a-aatatgaatgagcttactgtgattattcatgtgtactttc-----tggtcatacatttaaagtcagatagagaaatacctagaagcatgactactggattgcatgtcaaaaccatattaagatttgatggaatttgccTCCCAGAATTTCTG
i cerAty1.NW_012003680v1    N 0 C 0
s chlSab2.chr24                468969 281 -  84932903 cattttaaattcatttatgtatattcatggtttgatagctcttgtttataattgttga---atactattctatc-----aatttaccactgattctttatctactcacctata---gaacttcttgagtgttgctagttttgac-a-aatatgaatgagcttattgtgattattcatgtgtactttc-----tggtcatacatttaaagtcagatagagaaatacctagaagcatgactactggattgcatgtcaaaaccatattaagatttgacggaatctgccTCCTAGGATTTCTG
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       221204 275 +    420018 cattttaaattcatttatgtatattcatggtttgatag--cttgtttataattgttga---atactattctacg-----aatttaccactga----ttatctactcacctata---gaacttcttgagtgttgctagttttgac-a-aatatgaatgagcttactgtgattattcatgtgtactttc-----tggtcatacatttaaagtcagatagagaaatacctagaagcatgactactggattgcatgtcaaaaccatattaagatttgatggaatttgccTCCCAGAATTTCTG
i manLeu1.NW_012110885v1    N 0 C 0
s calJac3.chr10                199445 286 - 132174527 catttaaaattcatgtatgcattttcatggtgtgatagctctcctttataatatctga---atatcattctatc-----aatttatcacagaatatttatctactcacataca---taacttcttgagtgtttctgattttgac-a-aatatgagtggacttatggtgatcattcatgtacagttttctttgtggtcacacctttaaagtcaggcagacaagtacccaggagcatgattgctagattgaatggcaatgctatgttaaaatttgACTGAATTTGCCTTCTAGACTTTCTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              11158 287 +    130757 cattt-agattcattcatatgttttcatagtttgatagctcttctttaaaatggct-----atattatcccattatgtgaatttactacagattgcttattaacctacaga-a---taa-tttttgaatgtttatagtttaggg-ataatgtgaatgaagctattggaattattcatgtgcagttttcctcacggacatatttttacattcaaataaatgaacacttaaaagcaagattgctggattgcatagtcaaagtacgttggaatttgactaaaattgccTCTTGGCATTTCTG
i saiBol1.JH378376          C 0 C 0

a score=329331.000000
s hg38.chr15_KI270851v1_alt       569 102 +    263054 TGAAGT-GGAGG-CGCTCAGCTGACCCTGTCTCCTTGCTGGGAGGAAGCTCAGTGCTCAG-GGTGGGGCCACCTGGGTGGATCCAGGCCAAGCTCCCTCTCAACA
s rheMac8.chr7              169241597 102 + 169600520 TAAAGT-GGATG-CACTCAGTTGACCCTGTCTCCTTGCTCGGAGGAAGCCCAGTTCTCAG-GGTGGGGCCACCTGGGTGGATCCAGGCCCAGATCCCTCTCGACA
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        33459 102 +    808388 TGAAGTGGGGGG-CACTCAGCTGACTCTGTCTCCTTG-TGGGAGGAATCCCAGTGCTCAG-GGTGGGGCCTCCTGGGTCGATAGAGGCCCAGTTCCCTCTCAAGC
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       209936 102 -   3745747 TAAAGT-GGATG-CACTCAGTTGACCCTGTCTCCTTGCTCGGAGGAAGCCCAGTTCTCAG-GGTGGGGCCACCTGGGTGGATCCAGGCCCAGATCCCTCTCGACA
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       540273 102 +    767749 TGAAGT-AGATG-CACTCAGTTGACCCTGTCTCCTTGCTGGGAGGAAGCCCAGTTCTCAG-GGTGGGGCCACCTGAGTGGATCCAGGCCCAGATCCCTCTCGACA
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                469250 102 -  84932903 TGAAGT-GGATG-CACTCAGTTGACCCTGTCTCCTTGCTGGGAGGAAGCCCAGTTCTCAG-GGTGGGGCCACCTGGGTGGATCCAGGCCCAGCTCCCTCTCAACA
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       221479 102 +    420018 TGAAGT-AGATG-CACTCAGTTGACCCTGTCTCCTTGCTGGGAGGAAGCCCAGTTCTCAG-GGTGGGGCCACCTGGGTGGATCCAGGCCCAGATCCCTCTCGACA
i manLeu1.NW_012110885v1    C 0 C 0
s colAng1.NW_012115910v1      6762818 103 -   6934359 TGAAGT-GGAGG-CGCTCAGCTGACCTTGTTTTCTTGCTGGGAGGAAGCCCAGTGCACAGTGGTGAAGCCACCTGTGTGGATCCAGGCCCAGCTCCCTTTCAACC
i colAng1.NW_012115910v1    N 0 C 0
s calJac3.chr10                199731 102 - 132174527 GGAAGT-GGGGG-TACTCAGTTAACCCTTTCTTCTTGGTGGGAGGAAGCCCAGTGCTCAG-GGCAGGGCCACCTGGGTTGATCCAGGCCAAACTCCCTCTCAACA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              11445 103 +    130757 TGAAAT-GGGGGACACTCAGCTGACCCTGCCTTCTTGCTGGGAGGAAGCCCAGTGTTCAG-GGTGGGGCCACCTTTGTGGATCATGGCCCAGCTTTCACTCAACC
i saiBol1.JH378376          C 0 C 0

a score=50217.000000
s hg38.chr15_KI270851v1_alt       671 14 +    263054 ATTAGGGACAGC-AG
s gorGor5.CYUI01007821v1         7880 14 -     16452 attagggacagc-ag
i gorGor5.CYUI01007821v1    N 0 C 0
s rheMac8.chr7              169241699 14 + 169600520 ATTAGGGATAGC-AG
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        33561 14 +    808388 CTTAGGGACAGC-AG
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       210038 14 -   3745747 ATTAGGGATAGC-AG
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       540375 14 +    767749 ATTAGGGATAGC-AG
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                469352 15 -  84932903 ATTAAGAAGAGCAAA
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       221581 14 +    420018 ATTAGGGATAGC-AG
i manLeu1.NW_012110885v1    C 0 C 0
s colAng1.NW_012115910v1      6762921 14 -   6934359 ATTACGAAGAGC-AG
i colAng1.NW_012115910v1    C 0 C 0
s calJac3.chr10                199833 14 - 132174527 ATTAGGAATAGC-AG
i calJac3.chr10             C 0 I 48240
s saiBol1.JH378376              11548 14 +    130757 GTTAGAGACAGC-AG
i saiBol1.JH378376          C 0 C 0

a score=589333.000000
s hg38.chr15_KI270851v1_alt       685 159 +    263054 C----CTGCCCTGTGGATGCACATCTAGGAAACAGATGCCCCAGACATGCATTGTCCAGGACCACAGAGATGCTTAGGAGTCAGACAGGAAGGGGCACACTGAGGAGCAGGTGCTGGGATAGACCAGGAGGGGAGCTTCTAGCAAAATCCTTGGTTCTCCTTT
s gorGor5.CYUI01007821v1         7894 155 -     16452 c----cttccctgtggatgcacatctaggAAACAGATGCCCCAGACATGCATTGTCCAGGACCACAGAGATGCTTAGGAG----ACAGGAAGGGGCACACTGAGGAGCAGGTGCTGGGATAGACCAGGAGGGGAGCTTCTAGCAAAATCCTTGGTCCTCCTTT
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169241713 157 + 169600520 C----CTGCCCTGTAGATGCACATCTAGGAAGCAGATGTCCCAGACATGCATTGTCCAGGAACAC--AGATGCTCAGGACTCAGACAGGAAGGGGTGCACTGAGGAGCAGGTGCTGGGATAGATGAGGAAGGGAGTTTCTGGCCAAATCCTTGGTCATCCTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        33575 159 +    808388 CACTTCTGCTCTG--GATGCACA-CTAGGAAGCAGATGCCCCAGATGTGCACTGCCCAGGACCACAGAGATGCTCAGGACTCAGGTAGGAAGGGGCTCACTGAGGAGTAGATG-TGGACTAGACAAGGAGGGGAGCTTCTGAATAAATCCTGGGTCCTCCTTT
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       210052 157 -   3745747 C----CTGCCCTGTAGATGCACATCTAGGAAGCAGATGTCCCAGACATGCATTGTCCAGGAACAC--AGATGCTCAGGACTCAGACAGGAAGGGGTGCACTGAGGAGCAGGTGCTGGGATAGATGAGGAAGGGAGTTTCTGGCCAAATCCTTGGTCATCCTTT
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       540389 157 +    767749 C----CTGCCCTGTGGATGCACATGTAGGAAGCAGATGCCCCAGACATGCATTGTCCAGGACCAC--AGATGCTCAGGACTCAGGCGGGAAGGGGTGCACTGAGGAGCAGGTGCTGGGATAGATGAGGAGGAGAGTTTCTGGCCAAATCCTTGGTCATCCTTT
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                469367 155 -  84932903 C----CTGCCCTGTGGATACACATCTAGGAAGCAGATGCCCCAGACATGCATTGTCCAGGACCAC--AGATGCTCAGGACTCAGGCCGGAAGGGGTGCATTGAGGAGCAGGTGCTGGGATAGATGAGGAGGG--GTTTCTGGCCAAATCCTTGGTCATCCTTT
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       221595 157 +    420018 C----CTGCCCTGTGGATGCACATGTAGGAAGCAGATGCCCCAGACATGCATTGTCCAGGACCAC--AGATGCTCAGGACTCAGGTGGGAAGGGGTGCACTGAGGAGCAGGTGCTGGGATAGATGAGGAGGGGAGTTTCTGGCCAAATCCTTGGTCATCCTTT
i manLeu1.NW_012110885v1    C 0 C 0
s colAng1.NW_012115910v1      6762935 158 -   6934359 C----CCGCCCTGTGTACGCGCATCTAGGAAGCAGATGCCCCAGACGTGCGTTGTCC-GGAACACAGAGAAGCTCAGGACTCTGGCAGGAGGGGGTGCACTGAGGAGCAAGTGCTGGGATAGACAAGGAAGGGAGCTTCTGGACAAATTCTGGGTCATCCTTT
i colAng1.NW_012115910v1    C 0 C 0
s calJac3.chr10                248087 157 - 132174527 C----CCGCCCTGTGGATGCACATCTAGGAAGCACTTGCCCCAGATGTGCACTGTCCAGGACCACAGAGACACTCAGGACTCAGGCAGGAAGGGACAATCTGAGGAGCAGATG-TGGGACAGATGAGGAGGGGAGC-CTCGGGCCAATCCTGGGCCCTCCTTT
i calJac3.chr10             I 48240 C 0
s saiBol1.JH378376              11562 157 +    130757 C----CCACCCTGTGGATGCACATATAGGAATCAGATG-CCCAGACGTGCATTGTCCAGGACCACAGAGCTGCTCAGGACTCAGGCAGGGAGGAGCACACTGAGGAGCAATTGCTGGGATAGACGAAGAAGGAGAT-TCTGGACAAATCCTAGATCCTCTTTT
i saiBol1.JH378376          C 0 C 0

a score=1443110.000000
s hg38.chr15_KI270851v1_alt       844 486 +    263054 AGCGAAACTATATCTAACTCCCAGGAAAACTTCCACTCCATCATTTGTAACCCATGCCCTGAAATTTCCATGCTCAAACTCAGTAAACTCAGTGGATTTAGCTGGAAGTGTGAAAAAAA-ACTAAAATGAAAATGACTC--GTTAATTCTGTGATAATTGGTCATTTTCTAGGGAACACCCCAATAATATTG---ATGATCATAATGTTAATGTCAAAAGCAACATA------CACCGTCAGCATGATGGCAGTGTGTCTCCTGGTAGAATATATTTA-TTACTTGAAAATTATGCTCAAAGCAGTCTTTTCCCACAGAAAATCCCACTTTCTCTTCTCAC---A----CAGTCAATTTCAGTATCCTGATCCTCAGAGTTGGAAGCACGGTGTCCTCAGGAGATAGGAGGGAAAGTCACTAGCATGGCCCTGGAGTCTTGGTGCCAGA---TTCTTCATCTTTGTGGCAATCAAAAGGCAAATATTCTGTACCTACTT--GAAGGACTTC
s gorGor5.CYUI01007821v1         8049 481 -     16452 AGCGAAACTATATCTAACTCCCAGGAAAACTTCCACTCCATCATTTGTAACCCATGCCCTGAAATTTCCATGCTCAAACTCAGTAAACTCAGTGGATTTAGCTGGAAGTGTGAAAAAAA-ACTAAAATGAAAATGACTC--GTTAATTCTGTGATAATTGGTCATTTTCTAGGGAACACCCCAATAATGTTG---ATGATGATAATGTTAATGTCAAAAGCAACATA------CACCGTCATCATGATGGCAGAGTGTCTCCTGGTAGAATATATT-A-TTACTTGAAAATTATGCTCAAAACAGTCTTTTCCCACAGAAAATCCCACTTTCTCTTCTCAC---A----CA----ATTTCAGTATCCTGATCCTCAGAGTTGGAAGCACCGTGTCCTCAGGAGATAGGAGGGAAAGTCACTAGCATGGCGCTGGAGTCCTGGTGCCAGA---TTCTTCATCTTTGTGGCAATCAAAAGGCAAAGATTCTGTACCTACTT--GAAGGACTTC
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169241870 480 + 169600520 AGCAGAACCACATCTAATTCCTAGGAAAATGTCCACTCCATCATTTGTAACCAATGACCTGAAATGTCCAGGCTCAAAC-------ACTCAGTGGATGTAGCTGGAAGTGTG--AAAAA-ACTAAAATGAAAACTACTCAAGTTCGTTCTGTGATAATTGATCATTTTCCAGGGAA---CCCAATAATATTGCTAATAACAATAATGTTCATGTCAAAAGCAACACA------CACAGTCAGCATGATGGCAGTGTGTCTCATGGTAGAATAAACTTATTTGCTTGAAAATTATGTTCACACCAGTCTGTCCC-ACAGAAAATCCAACTTTCTCTTCTCAT---G---TCA----ATGTCAGCATCCTGATCCTCAGAGTTGGAAGCAATGTGTCCTCAGGAGACAGGAGGGGAAATCACTAGCATGACCCTGGAGTCCTGGTGCCGGATCCTTCTTCATCTTTGTGGGAATC-AAAGACAAAGATTCTGTACCTACTTGGGAAAGACTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        33734 486 +    808388 AGCTGAACCATATCAAACCATCGGGAGACCTTCCACTACATT-TTGGTGACCCATACCCTGAACTTTCCAAACTCTAACACAGTAAACTTGGTGAATTTAGCTGGAAGTGTG--AAAAA-ACTGAAATGAAAACGACTCAAGTTGATTGTGTAACAATTGATCATTTTCCAGGGAACATCCCAACAATATTG---ATAATAATAATGTTAATGTCAAAATC--CACA------CACTGTCAACATGATGGAAGTGTGTCTCATGGTATAATGAATTTATTTACTTGAAAATTGTGTTCACACCAGTCTTTTCCAACAGAAAATCCCACTTTCTCTTCTCACACAG---TCA----ATTTCAGCAGCCTGATCCTCAGAGTTGGAAGCACCGTGTCCTCAGGGTATAGGAGGGGAAATCACTAGCATGTCCCTGGAGTCCTGGTGCCAGATCCTTCTCCATCTTTTTGGGAATC-AAATGCGAATATTCTGTATCAATTT--GAATAACTTT
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       210209 478 -   3745747 AGCAGAACCACATCTAATTCCTAGGAAAACGTCCACTCCATCATTTGTAACCAATGACCTGAAATGTCCAGGCTCAAAC-------ACTCAGTGGATGTAGCTGGAAGTGTG--AAAAA-ACTAAAATGAAAACTACTCAAGTTCGTTCTGTGATAATTGACCATTTTCCAGGGAA---CCCAATAATATTGCTAATAACAATAATGTTCATGTCAAAAGCAACACA------CACAGTCAGCATGATGGCAGTGTGTCTCATGGTAGAATAAACTTATTTGCTTGAAAATTATGTTCACACCAGTCTGTCCC-ACAGAAAATCCAACTTTCTCTTCTCAT---G---TCA----ATGTCAGCATCCTGATCCTCAGAGTTGGAAGCAATGTGTCCTCAGGAGACAGGAGGGGAAATCACTAGCATGACCCTGGAGTCCTGGTGCCGGATCCTTCTTCATCTTTGTGGGAATC-AAAGACAAAGATTCTGTACCTACTT--GAAGGACTTT
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       540546 474 +    767749 AGCAGAACCATGTCTAATTCCTAGGAAAACTTCCACTCCATCATTTGTAACCAATGACCTGAAATGTCCAGGCTC-----------ACTCAGTGGATTTAGCTGGAAGTGTG--AAAAA-ACTAAAATGAAAACTACTCAAGTTCATTCTGTGATAACTGATCATTTTTCAGGGAA---CCCAACAATATTGCTAATAACAATAATGTTCATGTCAAAAGCAACACA------CACAGTCAGCATAATGGCAGTGTGTCTCATGGTAGAATAAACTTATTTGCTTGAAAATTATGTTCACACCAGTCTGTCCC-ACAGAAAATCCAACTTTCTCTTCTCAT---G---TCA----ATGTCAGCATTCTGATCCTCAGAATTGGAAGCAATGTGTCCTCAGGAGACAGGAGGGGAAATCACTAGCATGACCTTGGAGTCCTGGTGCCAGATCCTTCTTCATCTTTGTTGGAATC-AAAGACAAAGATTCTGTACCTACTT--GAAAGACGTT
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                469522 478 -  84932903 AGCAGAACCACGTCTAATTCCTAGGAAAACTTCCACTCCATCATTTGTAACCAATGACCTGAAATGTCCAGGCTCAAAC-------ACTCAGTGGATTTAGCTGCAAGTGTG--AAAAA-ACTAAAATGAAAACTACTCAAGTTCATTCTGTGATAATTGATCACTTTCCAGGGAA---CCCAACAATATTGCTAATAACAATAATGTTCATGTCAAAAGCAACACA------CACAGTCAGCATGATGCCAGTGTCTCTCATGGTAGAATAAACTTATTTGCTTGAAAATTATGTTCACACCAGTCTGTCCC-ACAGAAAATCCAGCTTTCTCTTCTCAT---G---TCA----ATGTCAGCATCCTGATCCTCAGACTTGGAAGCACTGTGTCCTCAGGAGAGAGGAGGGGAAATCACTAGCATGACCCTGGAGTCCTGGTGCCAGATCCTTCTTCATCTTTGTGGGAATC-AAAGACAAAGATTCTGTACCTACTT--GAAAGACGTT
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       221752 474 +    420018 AGCAGAACCATGTCTAATTCCTAGGAAAACTTCCACTCCATCATTTGTAACCAATGACCTGAAATGTCCAGGCT----C-------ACTCAGTGGATTTAGCTGGAAGTGTG--AAAAA-ACTAAAATGAAAACTACTCAAGTTCATTCTGTGATAACTGATCATTTTTCAGGGAA---CCCAACAATATTGCTAATAACAATAATGTTCATGTCAAAAGCAATACA------CACAGTCAGCATAATGGCAGTGTGTCTCATGGTAGAATAAACTTATTTGCTTGAAAATTATGTTCACACCAGTCTGTCCC-ACAGAAAATCCAACTTTCTCTTCTCAT---G---TCA----ATGTCAGCATTCTGATCCTCAGAATTGGAAGCAATGTGTCCTCAGGAGACAGGAGGGGAAATCACTAGCATGACCTTGGAGTCCTGGTGCCAGATCCTTCTTCATCTTTGTTGGAATC-AAAGACAAAGATTCTGTACCTACTT--GAAAGACGTT
i manLeu1.NW_012110885v1    C 0 C 0
s colAng1.NW_012115910v1      6763093 493 -   6934359 AATGAAACCACATCTAACCCCTGGGAGACCTTCCACTCCATCATTTGTAACCCATGCCCTGAAGCTTCCAAGCTCAAACACAGTAAAATTAGGTGATTTAACTGGAAGTGTG--AAAAA-ACTGAAACGAAAACAACTCCAGTTAATTCTAAGACAATTGGTCATTTTCCAGAGAACAACCCAATAAAATTGACAATAACAATAATGTTAATGTCAAAAGCAACACACACGCTCACGGTCGGCATGATGGCAGTGTGGCTCATGGTAGAATAAATTTATTTGCTTGAAGATTACATTCACACCAGTATGTTCCCACAGAAAATCCCACTTTCTCTTCTCAC---A----CA----ATTTCAGCATCTTGATCCTCAGAATTGGAAGCACCATGTCCTCAGGAGATAGGA-GGGAAATCACTAGCATGGCCCTGAAGTCCTGGTGCCAGATCCTTCTCCATCTTTGTGGCAATC-AAAGGCAAAGATTTTGTACGTAGTT--AAAGGACTTT
i colAng1.NW_012115910v1    C 0 C 0
s calJac3.chr10                248244 482 - 132174527 AGCTGAATGGCATGTAACCCCCAGGAGACCTCCCACTGCATCTTTTGTAACCCGTGCCCTGAAATTTCCAATCTCAACTATAGTAAACTCAGTGAATTTAGCTACAAGTGTG--AAAAACACTGAAACGGAAACTACTCAAGTTATTTCTGTGACAATTGGTCAATTTCCAGGGAACACCCCAATGATATTGATAATAACAATATTGCTAACGTCAGAAGCCACACA------------CAGGGCGATGGCAG-GTGTCCCATGGTGGGATAAATGTATTTACTTGAAAACCATGTTCACAAAGGTCTTTTCCCACAGAAAATCCCACCTTCTCTTCTCAC---GCCGTCA----ATTTCAGCATCCGGATCCTCAGAGCTGGAAGCACCCTGTCCTCAGGAT----TAGGGGAAATCACTGGGATGGCCCTGGAGTCCTGGTGACAGATCCTTCTGCATCTTTGCGGCAATC-AAAGGCAAAGATTCTCTACCTACTT--GAAGGTCTTA
i calJac3.chr10             C 0 C 0
e saiBol1.JH378376              11719   0 +    130757 C

a score=3516875.000000
s hg38.chr15_KI270851v1_alt      1330  959 +    263054 ATAAGCAAATTACGATTTAATTTACAAGAACACTATGTCACAC--GTATACACACAGGTTTTTTATATTTGTT------------------------------------------------------------------GTCTTTTCCGTGATTATCTCTTACAGTGTTGTATattta----atatattcattttattttaattttatgtaGG-TTCCTCATTCCTTCATATGTGTATTACATTTCCCTGGAACTATCACGTATTTTATATACTTAGCAATGGAAAGCTCCTGGTTTTAGTTGTCTGTGCAGCAGGCAGGGGGAGGAGAAGAAAAT-GGGTCACACTCCTGACCCTGCCTGCATAGCCACAGGTTCCCAAAAGCAGAGGTCCCTGCTGTGCACCTTCCCTGG-GACAACTTTCTTATTGATGGGTCTTGTGTTTAATTAATGAGAGTTT--GTTTTAGGGGTATGGGCCCAGGTGCAGCTACTGAATCCAGTGCAAGAGTGGAAATAAGCTTCCAAAACA--GTATCACCTGAGAGAGAACTGAGTCCATCCCTGTA-GTACCATCTGAGTTACAGCTTCCTGGGCAAAGGCTCAGAATCATAAAAACTTTACATATGTGTCATGTGCTGTGATTCTTCTGTGTCACTGTATGTTGAGCTATATCTGTGTGGTGCCACTTACACTTAATGAGATGAGATTCCTTCTACTTGTTTCACGTCACTCGTGATCTCTGAAGCTacttcagatttctgctttaatatgtaaagagcatgtcaatcatcacccacattcttaccataataaaagtctggaaaattgattatcaatgatttcttggatctattgaagaaatgaaattgcagg-gaaaaccaggacccaaaaactagaaagacattaaaatagagatcataacactgacgggacaaactttctgtggcaataagatacccaattataaacaagacctaaggccatgccaggcagggattaagtcactcacccctacactt-aaaaa--atagac----tatgttg
s gorGor5.CYUI01007821v1         8530  915 -     16452 ATAAGCAAATTA-----------------------TGTCACAC--ATATACACACAGGTTTTTTATATTTGTT-------------------------------------------------------------------TCTTTTCCATGATT--CTCTTACAGTGttgtatattta----atatatttattttatttta------tGTAGG-TTCCTCATTCCTTCATGTGTGTATTACATTTCGCTGGAACTATCACGTATTTTATATACTTAGCAATGGAAAGCTCCTGGTTTCAGTTGTCTGTGCAGCAGGCAGGGGGAGCAGAAGAAAAT-GGGTCACACTCCTGACCCTCCCTGCATAGCCACAGGTTCCCAAAAGCAGAGGTCCCTGCTGTGCACCTTCCCTGG-GACAACTTTCTTATTGATGGGTCTTGTGTTTCATTAATGAGAGTTT--GTTTTAGGTGTGTGGGCCCAGGTGCAGCTACTGAATCAAGTGCAAGAGTGGAAGTAAGCTTCCAAAACATAGTATCACCTGAGAGAGAACTGAGTCCATCCCTGTA-GTACCATCTGAGTTGCAGCTTCCTGGGGAAAGGCTCAGAATCATAAAAACTTTTCGTATGTGTCATGTGCTGTGGTTCTTCTGTGTCACTGCATGTTGAACTATATCTGTGTGGTGCCAC----ACTTAATGAGATGAGATTCCTTCTACTTGTTTCGCGTCACTCGTGATCTCTGAAGCTACTTCAGATTTCTGCTTTAATATGTAAA----------ATCATCACCCACATTCTTACCATAATAAAAGTCTGGAAAATTGATAATCAATGATTTCTTGAATCTATTGAAGAAATGAAATTGCAGG-GAAAACCAGGACCCAAAAACTAGAAAGACAttaaaatagagatgataacactgacgggacaaactttctgtggcaataagatacccaattataaacaagacctaaggccatgccaggcagggattaagtcactcacccctacactt-aaaaa--atagac----tatgttg
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169242350  969 + 169600520 ATAAGCAAATTATGATTTAATTTACAAGAATACTGTCTCACACACATATACACACAGGTttttagtatttgtt--------------------------------------------------------------tgttgtcttttacattataatgtcttatagtgctttatatttattttatgtattagttttattttaatttCACATAGG-TTCCTCATTCCTTCATCTGTGTATTACATTTCCCTAGAATGATCACATATTTTATATACATAGCAATGTAAAGCTCCTGCTTGCAGTTGTCTGTGAAGCAGGCAGGGAGAGTGGAAGGAAAT-GGTTCACACTCCTGACCCTCCCTGCACAGCTGTAAGTTCCCAAAAGCAGAGGACCCTGCTCTGCACCTTCCCTGGAGACAGCTTTATTATTGTTGAGTCTTGTGCTTAATTAATGAGAGTTTCTGTTTCAGGTGTGCAGGTCCAGGTGCAGCTACTGAATCCAGTGCAGGAGTGGAAATAAGTTTCCAAAACACAGTGTCACCTGAGAGATAA--GAGTCCATCCCTCTA-GGACCATCTGAATTCCCACTTCCTGGACGGAGCCCCAGAATCATAAAATCATCTCATATGTGTCCTGCACTAT--GTCTTCTGTGTCCCTGCATGCTCAGCAACATCTGTGTGGTGCCACTTATACTTCATGAGACGAGACTCCTGCTGCTTGTGTCAGGTCACTGGTGATCTCTGAAGCTACTTCTAGTTTCTGCTTTAATATGTAAAGAGCATGTCAGTCATCACCCACATTCTTACAAGAATATAAGCGTGGAAAATTAATTATCAATGATTTCTTGGATCTGCTGAATAAGTGAAATTGCAGG-G-AAACCAGGACCCCAAAACTACAAAGacgttgaaatagagatcatcagactgatggaacaaactttctgtggcaataagataccaaacaacaaatgagacctaattatacgccaggcaaggattaagtcactcacccctacactt-aaaac--atagat----tatgttg
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        34220  962 +    808388 ATACATAAATTATGATTCAGTTTACAAGAATATTACCTCACACACATACACACATAGGTTTTTAATATTTGTT--------------------------------------------------------------TGTTGTCTTTTCCATAATAATCTCTTATAGTGTTTTACATTTATTTAATGTATTAGATTTATTTTAATTTCATGTCGGTTTCCTCATTCCTTCCTCTTTGTATTGCATTTCCCTATAACTATCACGTATTTTATATACTTTGCAATGTAAAGCTCCTG-------------GTGCAGCCAGCAGGGGGAGGAGAAGGAAAT-GGGTCACACTCCTGA-CCTCCCTGTACAGCCGCAGGTTCCCAAACACAGAGGTCCCTGCTCTGCACCTTCCCTGGGGACAGCTTTCTTATTGGTGGGTCCTGTGTTTAATTAATGAGAGTTTCTGTTTCAGGGGTGCCGACCCGGGTACAGCTACTGGATCCACTGCAGGAGTGGAAATAAGCTTCCAAAACACAGTATCACCCGAGAGACAACGGAGTCCATCCCTGTA-GTGCCATGTGAATTCCAGATTCCTGAGCAGAGCCCCAGAATCATGAAAACTTATCATATGTGTCCTGTGCTGTGGGTATCCTGTGTCCCTGCACGTTCAGCTACA--TGTGTGGTGCCACTTACACTTAATGAGATGAGATTCCTGCTGCTTCTGTCAGGTCACTGGTGATGTCTGAAGCTACTTCTGGTTTCTGCTTTAATATGTAAAGAGCATGTCAATCATCACCCACATTCTTACAATAATATAAGCCTGGAAAATTGATTGTCAATGATTTCTTATATGAGTTGAAGAAATGAAATTGCAGG-A-AAACCTGGACCCCAAAGCTAGAAAGACAttacaatagtgatcaccagtctgatggaacaaactttctgtggcaataagataccaaattgtaaacaagacctaaggtcacaccgggcaaggattaagtcactcatccctacagtt-aaaaa--aaagagaaaaaatgttg
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       210687  969 -   3745747 ATAAACAAATTATGATTTAATTTACAAGAATACTGTCTCACACACATATACACACAGGTTTTTAGTATTTGTT--------------------------------------------------------------TGCTGTCTTTTACATTATAATGTCTTATAGTGCtttatatttattttatgtattagttttattttaatttCACATAGG-TTCCTCATTCCTTCATCTGTGTATTACATTTCCCTAGAATGATCACATATTTTACATACATAGCAATGTAAAGCTCCTGCTTGCAGTTGTCTGTGAAGCAGGCAGGGAGAGTGGAAGGAAAT-GGTTCACACTCCTGACCCTCCCTGCACAGCTGTAAGTTCCCAAAAGCAGAGGACCCTGCTCTGCACCTTCCCTGGAGACAGCTTTATTATTGTTGAGTCTTGTGCTTAATTAATGAGAGTTTCTGTTTCAGGTGTGCAGGTCCAGGTGCAGCTACTGAATCCAGTGCAGGAGTGGAAATAAGTTTCCAAAACACAGTGTCACCTGAGAGATAA--GAGTCCATCCCTCTA-GGACCATCTGAATTCCCACTTCCTGGACGGAGCCCCAGAATCATAAAATCATCTCATATGTGTCCTGCACTAT--GTCTTCTGTGTCCCTGCATGCTCAGCAACATCTGTGTGGTGCCACTTATACTTCATGAGACGAGACTCCTGCTGCTTGTGTCAGGTCACTGGTGATCTCTGAAGCTacttctagtttctgctttaatatgtaaagagcatgtcaatcatcacccacattcttacaagaatataagcgtggaaaattgattatcaatgatttcttggatctgctgaataagtgaaattgcagg-g-aaaccaggaccccaaaactacaaagacgttgaaatagagatcatcagactgatggaacaaactttctgtggcaataagataccaaacaacaaatgagacctaattatacgccaggcaaggattaagtcactcacccctacactt-aaaac--atagat----tatgttg
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       541020  969 +    767749 ATAAGCAAATTACGATTTAATTTACAAGAATACTGTCTCACACATATATACACACAAGTTTTTAGTATTTGTT--------------------------------------------------------------TGCTGTCTTTTACATTATAATATCTTATAGagctttatatttatttcatgtattagttttattttaatttCACGTAGG-TTCCTCATTCCTTCATCTGTGTATTACATTTCGCTAGAACGATCACATATTTTAGATACAAAGCAATGTAAAGCTCCTGCTTGCAGTTGTCTGTGAAGCAGGCAGGGAGAGTGGAAGGACAT-GGTTCACACTCCTGACCCTCCGTGCACAGTTGTAAGTTCCCAAAAGCAGAGGACCCTGCTCTGCACCTTCCCTGGGGACAGCTTTATTATTGTTGAGTCTTGTGCTTAATTAATGAGAGTTTCTGTTTCAGGTGTGCAGGTCCAGGTGCAGCTACTGAATCCAGTACAGGAGGGGAAATAAGCTTCCAAAACACAGTGTCACCTGAGAGATAA--GAGTCCATCCCTCTA-GGACCGTCTGAATTCCCGCTTCCTGGACGGAGCCCCAGAATCATAAAAACATCTCATATGTGTCCTGCACTGT--GTCTTCTGTGTCCCTGCATGCTCAGCAACATCTGTGTGGTGCCACTTATACTTCATGAGACAAGACTCCTGCTGCTTGTGTCAGGTCACTGGTGATGTCTGAAGCTacttctggtttctgctttaatacgtaaagagcatgtcaatcatcacccacattcttacaagaatataagcctggaaaattgattatcaatgatttcttggatctgctgaataagtgaaattgcagg-g-aaaccaggaccccaaaactacaaagacgttgaaatagagatcatcagactgatggaacaaactttctgtggcaataagatacc-aataataaatgagacctaatgctatgccaggcaaggattaagtcactcaaccctacacttaaaaaa--atagac----tccgttg
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                470000  964 -  84932903 ATAAGCAAATTATGATTTAATTTACAAGAATACTGTCTCACACATATATACACACAGGTTTTTAGTATTTGTT--------------------------------------------------------------TGTTGTCTTTTACATTATAACGTCTTATAGTGCTTTATATTTATTTCACGTATTAG----ATTTTAATTTCGCGTAGG-TTCCTCATTCCTTCATCTGTGTATTACATTTCCCTAGAACGATCACATATTTTAGATACAAAGCAATGTAAAGCTCCTGCCTGCAGTTGTCTGTGAAGCAGGCAGGGAGAGTGGAAGGAAAT-GGTTCACACTCCTGACCCTCCGTGCACAGCTGTAAGTTCCCAAAAGCAGAGGACCCTGCTCTGCACCTTCCCTGGGGACAGTTTTATTATTGTTGAGTCTTGTGCTTAATTAATGAGAGTTTCTGTTTCAGGTGTGCAGGTCCAGGTGCAGCTACTGAATCCAGTGCAGAAGTGGAAATAAGCATCCAAAACACAGTGTCACCTGAGAGATAA--GAGTCCATCCCTCTA-GGACCATCTGGATTCCCACTTCCTGGATGGAGCCCCAGAATCATAAAAACATCTCATATGTGTCCTGCACTGT--GTCTTCTGTGTCCCTGCATGCTCAGCAGCATCTGTGTGGTGCCACTTATACTTCATGAGACGAGACTCCTGCTGCTTGTGTCAGGTCACTGGTGATCTCTGAAGCTACTTCTGGTTTCTGCTTTAATATGTAAAGAGCAGGTCAGTCATCACCCACATTCTTACAAGAATATAAGCATGGAAAATTGATTATCAATGATTTCTTGGATCTGCTGAATAAGTGAAATTGCAGG-G-AAACCAGGACCCCAAAACTACAAAGACgttgaaatagagatcatcagactgatggaacaaactttctgtggcaataagatacc-aataataaatgagacctaatgctagcccaggcaaggattaagtcactcacccctacactt-aaaac--acagat----tatgttg
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       222226  969 +    420018 ATAAGCAAATTATGATTTAATTTACAATAATACTATCTCGCACACGTACACACACAGGTTTTTAAAATTTGAT--------------------------------------------------------------TGTTGTCTTTTCCATGATTATTTCTTATAGTGTTCTATATTTATTTAATGTATCAGTTTTACTTTAATTTTATGTAGG-TTCCTCATTCCTTCATCTGTGTATTACATTTCCCTAGAACGATCACATATTTTACATACATAGCAATGTAAAGCTCCTGCTTGCAGTTGTCTGTGAAGCAGGCAGGGAGAGTGGAAGGACAT-GGTTCACACTCCTGACCCTCCCTGCACAGCTGTAAGTTCCCAAAAGCAGAGGACCCTGCTCTGCACCTTCCCTAGGGACAGCTTTATTATTGTTGAGTCTTGTGCTTAATTAATGAGAGTTTCTGTTTCAGGTGTGCAGGTCCAGGTGCAGCTACTGGATCCGGTG-AGGAGTGGAAATAAGCTTCCAAAACACAGTGTCACCTGAGAGATAA--GAGTccatccctcaa-ggaccatctgaattcccgcttcctggacggagccCCAGAATCATAAACACATCTCATATGTGTCCTGCACTGT--GTCTTCTGTGTCCCTGCATGCTCAGCAACATCTGTGTGGTGCCACTTACACTTGATGAGATGAGATTCCTTCTGCTTCTTTCATGTCACTGATGATCTCTGAAGCTacttcagatttctgctttaatatgtaaagagcatgtcagtcatcacccacattcttacaagaatataagcgtggaaaattgattatcaatgatttcttggatctgctgaataagtgaaattgcagg-g-aaaccaggaccgcaaaactacaaagatgttgaaatagagatcatcagactgatggaaaaaactttctgtggcaataagataccaaataataaatgagacctaatgctatgccagacaaggattaagtcactcacccctacacttaaaaaa--atagac----tgtgttg
i manLeu1.NW_012110885v1    C 0 C 0
s colAng1.NW_012115910v1      6763586  929 -   6934359 ATAAACAAATAATGATTTAATTTACAAGAATACTATCTCAAACATGTATACATACAGGTTTTTAATATTTGTT--------------------------------------------------------------TGTTGTCTTATCCATGATAATTTCTTATAATGTTTTACATTTAT-----ATATTTGTTTTATTTTAATTTCATGTAGC-TTCCTCATTCCTTCATCTGTGCATTACATTTCTCTAAAATTATCACATATTTTATATACTTTGCAATGTAAAGGTCCTGGTTGCAGTTGTCTGTGAAGCTGGCATGGGGAGCAGAAGGAAATGGGTCCACACTCCTGACCCTCCCTGCATAGCGGCAGGTTCCCAAAAGCAGAGTTCCCTGCTCTGCACCTTCCCTGGGGATAGCTTTATTACTGGTGACTTTTGTGCTTAATTATTGAGAGTTTCAGTTTTAGGTGTTTAGGTCGAGGTGCAGCTAATGAGTCCAGTGCAGGAGGGGAAATAAGCTTCCAAAACATA------------------------------------------TCTGAGTTCCAGCTTCCTGGACGAAACCTCACAATCATAAACATTTTCCATATGCGTCCTGTGCTGTGGGTCTTCTGCGTCACTGCATGCTCAGCTACATCTGTGTGGTGCCACTTACACTTAATGAGATGACATTCCTGCTGCTTGTGTCAGGTCACTGGTGATCTCTGAAGCTacttctggtttctgctttaatatgtaaagagcatgtcagtcatcccccacattcctccaacaatgaaagcctggaaaattgattatcaatgatttcttgcatctattgaagaaatgaaattgcagg-gaaaaccaggacccaaaaactagaaagacaAtaaaatagagatcatcagactgatggaacaaacttgttgtggcaataagataccaaattataaacaaatcctaaggccatgccaagcaaaaattaagtcactcacccctacactt-aaaaa--atagac----tacgttg
i colAng1.NW_012115910v1    C 0 C 0
s calJac3.chr10                248726  952 - 132174527 TTTAGAAAATTATGATTCAGTTTGCAAGAACAGCACCTCACAC--ACGTACACACGGGTGTTTAATATTTGTTGT-------------------------------------------------------------------CTTTCCATGATAACCTCCTACAGTGTTGCACATTTATTTGACATATTTGCATTATTCTGATTTCATTCGGG-TTCCTCAGTCCTTCA--TGTGTGTCACGTTTCCCTAGAACTACCACGTATTTCATGTACTCAGCCACGGAAAGCTCCTGGCTGCAGTTGTCTGTGCAGCCGGCAGGGGGAGCAGAAGGAAAC-GGGTCACACTACCGACCCTCCCTGCACAGCCACAGGTTCA--AAAGCAGAGGCCCCTGCTCTGCCCCGTCCCTGG-GACAGCTTTCTTAGTGGTGGGTCTTGTGTTTAATTAATAAGAGTTTCTGTTTGAGGTGTGCGGGCCCAGGTGCAGCTACCAAATCCAGTGCAGGAGTCGGAATAAGCTTCCAAAACACAGTATCGCCTGACAGGTCACTGAGTCCATCCCTGTATTTACCATCTGACGTCCAGCTTCCTGGGAGGAGCCTCAGAACCATAAAAACTTCCCATATGTGTCCTGTGCTGCGGGTCTTCCGTGTCACTGCACGTTCAGCTACGTCTGAGTGGTGACACTTATACC---TGAGATGACATTCCCGCTGCTCCTATCAGGTCAATGGTGATCTCTGAAGCTGCTTCTGGTTTCTGCTTTAATATGTAAAGAGCATGTTGATCATCGCCCACATTCTTACAATAATAAAAGCCTGGAAAATTGATTATCAATGATTTCTTGGATCTGTTGAAGAAATGAAATTGTGGA-G-AAACCAGGACCCCAAAACTAGAAAGACAttaaaatagagattatcagcctgatggatcaaactttccatggcaataagatatcaaactataaacaggatttaaggccat---------ggattaagtaactcatctgtaaactt-aaaaaacatacac----tatgttg
i calJac3.chr10             C 0 N 0
s saiBol1.JH378376              11719 1019 +    130757 ATGAGCAAATTATGATTTAATTTCCAAGAATAACATCTCACAC--ATACACACAAAGGTTTTTAATATTTGTTGTGTTTTCCATGATAATCTCTTACAGTGTTTTTTTTTAATCTCTTACAGTGTTTTTAATATTTGTTGTGTTTTCCATGATAATCTCTTACAGTGttttatatatatttaatatatttattctattttaatttCATTAAGG-GTCCTCACTCCTTCATGTGTGTGTTACA-TTCCCTGGAACTATCACGTATTTTATGTACTT-TTTATGTGAAGCTCCTGGTTGCAGTTGTCTGTGCAGCCAGCAGGCGGAGCAGAAGGAAAC-GAGTCACACTCCTGACCCTCCCTGCACAGCTGCAGGCTCC--AAAGCAGAGGCCCCTGCTCTGCCCTTTCCCTGG-GACAGCTTTCTTAACGATGGGTCTTG-----AGTTAATAAGAGTTTCTGTTTTAGGTGCGTGGGCCCAGGTGCAGCTACCAAATCAAGTGCAGGAGTCAGAATAAGCTTCCAAAACACAGTGTCACCTGACAGGTAACTGAGTCCATCCCTGTA-TTACCAGCTGACGTCCAGCTTCCTCGGAAGAGCCTCAGAATCATAAAAACTTCTCATATGTGTCCTGTGCTGTGGGTCTTCTGTGTCACTGCATGTTCAGCCGCATCCGTGTGGTGCCACTTACACTTAATGAGATGAGATTCCTGCTG-TTGTGTCAGGTCAGTGGTGATCTCTGAAGCTactcctggtttttgctttaatatgtaaagagcatgtcaatcatcacccacattcttacaataatacaagcctggaaa----attataaatgatttattggatctgttgaataaatgaaactgcaaagg-aaaccaggacccaaaaactagaaagacattaaaataaaggtcatcagactgatggaacaaactttctgtggcaaaaaaatatcaaatcataaacaatacctaaggccatgccaggcaaggattaagtcattcacccctactctt-aaata--atagac----tatgttg
i saiBol1.JH378376          C 0 C 0

a score=392314.000000
s hg38.chr15_KI270851v1_alt      2289 126 +    263054 taactgccacagggctttttgtttttctctaacagctaaacaaacactggttctgagataagcaatattaaaacatttgcagttcatggaacttcagacatggagtaattgtgaccttgtttca-ca
s gorGor5.CYUI01007821v1         9445 126 -     16452 taactgccacagggctttttgtttttctctaacagctaaacaagcactggtcctgagataagcaatattaaaacatttgcagttcatggaacttcagacatggagtaattgtgaccttgtttca-ca
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169243319 116 + 169600520 taacttccacagggctttt----------taacagctaaacaagtactggtactgagataatcaatattaaaacatttgcagctcatggaactccagacactgcataactgtgcactcgttcca-ca
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        35182 125 +    808388 taacctccacaggggtttttctgtttctgtaacagttaaacgagcactggtcctgagacaagcaatattaaaacatttgcagctcatggaactccaggcatcgggtagctgtgcccctgttcca-c-
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       211656 116 -   3745747 taacttccacagggctttt----------taacagctaaacaagtactggtactgagataatcaatattaaaacatttgcagctcatggaactccagacactgcataactgtgcactcgttcca-ca
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       541989 116 +    767749 taacttccacaggcctttt----------taacagctaaaccagtactggtactgagataatcaatattaaaacatttgcagctcatggaactccagacactgcataactgtgcccctatttca-ca
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                470964 116 -  84932903 taacttccacagagctctt----------taacagctaaaccagtactggtactgagataatcaatattaaaacatttgcagctcatggaactccagacactgcataactgtgcgcttgttcca-ca
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       223195 116 +    420018 taacttccacagggctttt----------taacagctaaacaagtactggtactgagataatcaatattaaaacatttgcagctcatggaactccagacactgcataactgtgcgcttgttcca-ca
i manLeu1.NW_012110885v1    C 0 C 0
s colAng1.NW_012115910v1      6764515 124 -   6934359 taactgcctcagggctttttcattttccctagcagctaaataagcactggtcctaagataag-aacattaaaatatttgcagctcatggaactcaagacacggggtaactgtgcccttattcca-c-
i colAng1.NW_012115910v1    C 0 C 0
s calJac3.chr10                 80542 124 - 132174527 taacagccaca-agacttttctttttctctggaaactaaccaagcactggtcccgagacaagcaagatt-agaggatcgcagatcacagaacgccaggagctggctgactgtgcccctgttccacc-
i calJac3.chr10             N 0 C 0
s saiBol1.JH378376              12738 124 +    130757 taat-tccacagggatttttatttttctctagcagccatacaagcactgattctgatataagcaatattaagacatttatagctcatggaactcaagacatggggtaactgtgcccctgtttca-c-
i saiBol1.JH378376          C 0 C 0

a score=1067646.000000
s hg38.chr15_KI270851v1_alt      2415 201 +    263054 agccataaatagagctttgattggacaagagatggatttcagtaactttctcctgaaaagagaccactgaccatagactt-ggcctcaccaatttccagaggctgtgcactgtgtttttttccgcccctgcac----aaagcccttttgatgtgcagggcccaactgtaattcagttagttcttaagtcctcaccccaaagcaaac
s panTro5.chr14                542217 201 -  91965084 agccataaagagagctttgattggccaagagactgatttcagtaactttctcctgtgaagagaccactgaccatggactt-gtcctggccaatttctagaggctgtgcactgtgtgtctttctgcccctgcac----aaagcccttttgatatgcaggacccaactgtaattcatttagttcttaagtcctcaccccaaagcaaac
i panTro5.chr14             N 0 C 0
s panPan2.chr14                245294 201 - 107357366 agccataaagagagctttgattggccaagagactgatttcagtaactttctcctgtgaagagaccactgaccatggactt-gtcctggccaatttctagaggctgtgcactgtgtgtctttctgcccctgcac----aaagcccttttgatatgcaggacccaactgtaattcatttacttcttaagtcctcaccccaaagcaaac
i panPan2.chr14             N 0 C 0
s gorGor5.CYUI01007821v1         9571 200 -     16452 agccat-aatagagctttgattggacaagggacagatttcagtaactttctcctgaaaagagaccactgaccatagactt-ggcctcaccaatttccagaggctgtgcactgtgtgtctttctgcccctgcac----aaagcccttttgatgtgcagggcccaactgtaattcagttagttcttaagtcctcaccccaaagcaaac
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169243435 200 + 169600520 agccataaatagagctttgattggagaagagactgatttcagtaactttctcctgataagagatcactgaccatgga-tt-gtcctggccagatcacaaaggctgtgtaccatgtgtctttctgaccctgtac----aaagcccttttgatgtaccgggcccgactgtaattcactcagttcttaagtgctcaccccaaagcgcac
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        35307 197 +    808388 agccataaatagagcattgattggacaattg---gatttctgtaactttct-ctgagaagaaaccactgaccttggactt-gtcctggccagttccttgaggctgtgcactgtgtgtctttctgtccctgcac----aaagcccttttgatgtgcagggcccaactgcaattcatttagttcttaagtcttcaccccaacgcaaac
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       211772 200 -   3745747 agccataaatagagctttgattggagaagagactgatttcagtaactttctcctgataagagatcactgaccatgga-tt-gtcctggccagatcacaaaggctgtgtactgtgtgtctttctgaccctgtac----aaagcccttttgatgtaccgggcccgactgtaattcactcagttcttaagtgctcaccccaaagcgcac
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       542105 200 +    767749 agccataaatagagctttgattggagaagagactgatttcagtaactttctcctgataagagatcactgatcatgga-tt-gtcctggccaaattacaaaggctgtgtactgtgtgtctttctgaccctgtac----aaagcccttttgatgtaccgggtccgactgtaattcacttagttcttaagtgctcaccccaaagtgcac
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                471080 200 -  84932903 agccataaatacagcttcgattggagaagagactgatttcagtaactttctcctgataagagatcactgaccatgga-tt-gtcctggccagattacaaaggctgtgtactgtgtgtctttctgaccctgtac----aaagcccttttgatgtaccgggcccgactgtaatacacttaattcttaagtgctcaccccaaagcgcac
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       223311 200 +    420018 agccataaatagagctttgattggagaagagactgatttcagtaactttctcctgataagagatcactgatcatgga-tt-gtcctggccaaattacaaaggctgtgtactgtgtgtctttctgaccctgtac----aaagcccttttgatgtaccgggtccgactgtaattcacttagttcttaagtgctcaccccaaagcgcac
i manLeu1.NW_012110885v1    C 0 C 0
s colAng1.NW_012115910v1      6764639 197 -   6934359 ggcc----atagagctttgattggagaagagacatatttcagtaactttctcctgagaagagatcactgaccatggactt-gtcctcgccaaattgcagacaccgtgcactgtgtgtctttctgcccacgcac----aaagccctcttgatgtacagggcccaattgtaattcatttagttcttaagtcctcaccccaaagcaaac
i colAng1.NW_012115910v1    C 0 C 0
s calJac3.chr10                 80666 201 - 132174527 agctgtaaac--agctttgattggacaagagaccaatttcagcgactttctcctgattagag-acactgaccatgac-ctggtcctggctggttacag-aggctgtgcactgcttgtctttgtgcctctgcacttttaaaaaccttcttatgtacagggcccacttttaatgcgtttagatgtgaagttctcaccccaaagcaaac
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              12862 199 +    130757 agccataaatagagctttgattggacaagagactgatttcagtaaatttctcctgataagagaacactgactgtgga-tt-atactggccaatttttgaaggctgtgcactgtgtgtctttctgtccctgcac----aaagcccttttgatgtacaaggtccaactgtaatttacttag-ttttaagtcctcaccccaaagcaatc
i saiBol1.JH378376          C 0 C 0

a score=143246.000000
s hg38.chr15_KI270851v1_alt      2616 35 +    263054 atgaagtgcatgtagcgtgtctgtctgattattag
s panTro5.chr14                542418 35 -  91965084 ctgaaatgcatgtatcatgtgtgtttgcttattag
i panTro5.chr14             C 0 C 0
s panPan2.chr14                245495 35 - 107357366 ctgaaatgcatgtatcatgtgtgtttgcttattag
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1         9771 35 -     16452 aagtaatgcatgtaacgtgtgtgtctgcttattag
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169243635 35 + 169600520 ctgaaatgcaggtaacatgtgtgtttccttattag
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        35504 35 +    808388 ctgaaatgcatgtagcatgtgtgtttgcttattac
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       211972 35 -   3745747 ctgaaatgcaggtaacatgtgtgtttccttattag
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       542305 35 +    767749 ctgaaatgcatgtaacatgtgtgtttccttattag
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                471280 33 -  84932903 ctgaaatgcatgtaacatg--tgtttccttattag
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       223511 35 +    420018 ctgaaatgcatgtaacatgtatgtttccttattag
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                 80867 35 - 132174527 atggaatgcacgtaatgtgtgtgtttgctaatcac
i calJac3.chr10             C 0 N 0
s saiBol1.JH378376              13061 35 +    130757 atgaaatacatgtaatggttgtgtcttcctattac
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836  0 -   6934359 C

a score=1724642.000000
s hg38.chr15_KI270851v1_alt      2651 367 +    263054 acctgagagcatg----cctgccatgtgaatatccacagctcct---atagcctgctgagtgtgtatacttggccaacccattcacatgaattcatttctcgtctttccctgtcttgaagtacctgctcaatgtctctgtgggaggctttgcttcccagcctgttaagatggccgtcctgcagcttcaatcctttctcagaaataaagtcccctttctaaatcaataaattgggtgattcttcagttgacagcacaagctggcggaaa-------catggtaattccataaatgtctggaggacaggtgtagacagggatggggtaagaactcctggggggccacacac----cccacactatcatggaatttccctccagaaaa
s panTro5.chr14                542453 371 -  91965084 acatgacagcctc----cactccatgtgaatatccatagctccttttatagcctgctgagtgtgtacacttgaccaatccatttgcacaaattcatttctcgtctttccctctcttaaagtgcttgctcacagtccctgtgggaggcttt-cttcccagcctgttaagatggccatcctgcagcttcaaccctttctgagaaataaagtctcctttctaaatttataaactgggtgattcttccgttgaAagcacaagctgttggaaagagtt-atatggcaattgcataaatgcctggaagacaagtgtggataggg-tagggtaagaactcctggggg-ccacacac----cccactctg--atggaatttccctccagaaac
i panTro5.chr14             C 0 C 0
s panPan2.chr14                245530 371 - 107357366 acatgacagcctc----cactccatgtgaatatccatagctccttttatagcctgctgagtgtgtacacttgaccaatccatttgcacaaattcatttctcgtctttccctctcttaaagtgcttgctcacagtccctgtgggaggcttt-cttcccagcctgttaagatggccgtcctgcagcttcaaccctttctgagaaataaagtctcctttctaaatttataaactgggtgattcttccgttgaAagcacaagctgttgggaagagtt-atatggcaattccataaatgcctggaagacaagtgtggataggg-tagggtaagaactcctggggg-ccacacac----cctactctg--atggaatttccctccagaaac
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1         9806 378 -     16452 acatgagagcata----cctgccatgtgaatatccacagctccttctatagcctgctgagtgtgtacacttggccaatccattcacatgaattcatttctcgtctttccctgtcttgaagtgcctgctcaacgtctc--tgggaggctttgcttcccagcctgttaagatggccatcctgcagcttcaatcctttctcagaaaggaagtcctctttctaaatcaataaattgggtgattcttcagttgacagcacaagctggcagaaacagtt-agatggtaattccataaatgtctggaggacaggtgtggacagtgatggggtaagaactcccggggggctgcacaccccacccacactatcatggaatttccctccagaaaa
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169243670 375 + 169600520 atatgagcgcctc----cccacgatatgaatatccacagctccttctatagcctgctgagcgtgtacacttggccaatccattcgcatgaattcatttctcatctttccctcccttgaagtgtctgctcacagtctctgtgggaggctttgcttcccagcccgttaaggggaccatcctgcagcttcaaccctttctcagaaataaagtctcttttctaaattgataaattggttgattcttcagttgacagcacaagctggtgggaacagtt-agatggtaattccataaatgcctggagga-agatgtggacagggaaagggtaagatctcctgggaggctgcacac----cccacactttgacggaatttccctccagaaac
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        35539 373 +    808388 atatg-gagcctg----cacgccatgtgaatatccatagctccttctatagcctgctgagtgtgtccacttggccaatccatttgtttgaattcatttctcatctctccctatcttgaagtgcctgctcacagtctctgtgggaggctttgcttctcaacctgttaagatggctgccctgcagtatcaactctttaccagaaataaagtctcctttctaaatttataaattgggtgattctttggttagcagcacaaactggtgggaatagtt-ccatggtaatttcataaatatctggaggacagatgtggacagggttagggtaagatctcctggg-gaccacacac----cccacactgttatggaa-ttccctccagaaac
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       212007 375 -   3745747 atatgagcgcctc----cccacgatatgaatatccacagctccttctatagcctgctgagcgtgtacacttggccaatccattcgcatgaattcatttctcatctttccctcccttgaagtgtctgctcacagtctctgtgggaggctttgcttcccagcccgttaaggggaccatcctgcagcttcaaccctttctcagaaataaagtctcttttctaaattgataaattggttgattcttcagttgacagcacaagctggtgggaacagtt-agatggtaattccataaatgcctggagga-agctgtggacagggaaagggtaagatctcctgggaggctgcacac----cccacactttgacggaatttccctccagaaac
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       542340 375 +    767749 atatgagcacctg----cccacgatatgaatatccgcagctccttctatagcctgctgagcgtgtacacttggccaatccattcgcatgaattcatttctcatctttccctctcttgaagtgcctgctcaacatctctgtgggaggctttgcttcccagcctgttaaggggaccatcctgcagcttcaaccctttctcagaaataaagtctcctttctaaattgataaattggttgattcttcagttgacagcacaagctggtgggaacagtt-agatggtaattccataaacgcctggagga-agctgtggacagggaaagggtaagatctcctggggggctgcacac----cccacactttgatggaatttctctccagaaac
i cerAty1.NW_012003680v1    C 0 I 316
s chlSab2.chr24                471313 376 -  84932903 atatgagcacctg----cccacgatatgaatatccgcagctccttctatagcctgctgagcgtgtacacttggccaatccattcgcatgaattcacttctcatctttccctcccttgaagtatctgctcacagtctctgtgggaggctttgcttcccagcctgttaaggggaccatcctacagcttcaaccctttctcagaaataaagtctcctttctaaattgataaattggttgattcttcagttgacagcacaagctggtgggaacagttaagatagtaattccataaacgcctggagga-agctgtggatagggaaagggtaagatctcctggggggctgcacac----cccacactttcatggaatttccctccagaaac
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       223546 375 +    420018 atatgagcgcctg----cccatgatatgaatatccgcagctccttctatagcctgctgagcgtgtacacttggccaacccattcgcatgaattcatttctcatctttccctcccttgaagtgtctgctcacagtctctgtgggaggctttgcttcccagcctgttaaggggaccatcctgcagcttcaaccctttctcagaaataaagtgtcttttctaaattgataaattggttgattcttcagttgacagcacaagctggtgggaacagtt-agatggtaattccataaacgcctggagga-agctgtggacagggaaagggtaagatctcctggggggctgcacac----cccacactttgacggaatttccctccagaaac
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                251343 376 - 132174527 acatgagagcctg----cccGCCAcgtgaatatccacagcgcctcctacagcctgctgagtgtggacac-tggtcaatccattcatatgagttcatttctcatctttccctctgttgaagtgcctgctcacagtctctgtgggaggctttgcctcccaacctgctaacaaggccctcctg-aacttcaaccctttctcagaaataaagtttcctttataagtttataaattgggtgattcttcagctgaAagcacaagctggtgggaacagtt-acatgttagttctgtaaatgtctggaggacaggtggggacagggatagggtaagaaatcctgagggggggcacacat--cccacactttcatggaatttccctccagatac
i calJac3.chr10             N 0 C 0
s saiBol1.JH378376              13096 380 +    130757 acatgagagtttggccacccaccacatgaatacccatagtttcttctacagcctgttgagtgtgtacacttggtcaatccattcgcatgagttcatttctcatctttccttctcttgaagtgcctaatcactgtcactttcggaggctttgcttcccagcctgttaagttggctgttctgcagcttcaaccctttatcagaaataaagtttcctttctaaatttatgagttgagtgattcctcagttgacagcacaagctggtggg-acagtt-acatggtaattccagaaaagcctagagaacaggtgtggccaggaatagggtaataactcctg-gggattgcacatcc--cacacactttcatggaatttccctccagaaac
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836   0 -   6934359 C

a score=412270.000000
s hg38.chr15_KI270851v1_alt      3018 94 +    263054 ttctgggttctcaagatgagagtccaaacagaatcactcgtagctctg-tcgtcaggagaactattctgtgataaatatgcccagaactttctcc
s panTro5.chr14                542824 94 -  91965084 ttctgggttctcaagatgagaatccaaacagattccctcatggctctg-ttatcaggagaactatgctctgataaatatgcccagaacttcctcc
i panTro5.chr14             C 0 C 0
s panPan2.chr14                245901 94 - 107357366 ttctgggttctcaagatgagaatccaaacagattccctcatggctctg-tcatcaggagaactatgctctgataaatatgcccagaacttcctcc
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        10184 93 -     16452 ttc-gggttctcaagatgagagtccaaacagaatcactcgtagctctg-tcatcaggagaactattctgtgataaatatgcccagaactttctcc
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169244045 93 + 169600520 ttctggattttcaagatgagaatccaaacagattccctcatggctctg-tcatcaggagagctatactctgataaatac-cccagaattttctcc
i rheMac8.chr7              C 0 N 0
s macFas5.chrUn_KE145882        35912 94 +    808388 gtctgggtcctcaagatgacaatcccaataagttgtctcatggctctg-tcatcaggagaactattcactgacaaatatgctcagatcttcctcc
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       212382 93 -   3745747 ttctggattttcaagatgagaatccaaacagattccctcatggctctg-tcatcaggagagctatactctgataaatac-cccagaattttctcc
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       543031 93 +    767749 ttctggattttcaagatgagaatccaaacaaaatcactcatggctctg-tcatcaggagagctatactctgataaatac-cccagaattttctcc
i cerAty1.NW_012003680v1    I 316 C 0
s chlSab2.chr24                471689 93 -  84932903 ttctggattttcaagatgagaatccaaacagattccctcatggctctg-tcatcaggagagctatactctgataaatac-cccagaattttctcc
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       223921 93 +    420018 ttccgggttctcaagatgagaatccaaacagataccctcatgcctctg-tcatcaggagagctatactctgataaatac-cccagaattttctcc
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                251719 85 - 132174527 ttctggattcacaa-----gactccaaacagattccctcatggctctg-tcaccagcagaacttttctctgaaaa----gcccagaactttctcc
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              13476 94 +    130757 tactaggttcacaagatgggactccaaacagattccctcatggctctgttcaccaggaaatatattc-ctgataaatgtgcccagaactttctcc
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836  0 -   6934359 C

a score=2952966.000000
s hg38.chr15_KI270851v1_alt      3112 627 +    263054 taacagatgctacagag-acaaaatacttttcaagatctttattctatgtgagaggaagggattcttttccatcccagacagcttcatcttagccttcccgtgtcatgaaaa-gggGTATAATTAATAAA-CAACTGGGGTCAGATTCAAGAAAATAATCTGTGGATGCTGCAGCCAGGAAGGGGAGTGGAGGATGGAGGAAAATCCGCTGTACCACTGGAGACTCcttgtaaagggtgcagcctagagaaaacacagcaagaaaacattggaagtcaatttccagaacatatactgctcccctgtccactgca-----ttacctcccctcctcaccaataggattaatctggattaaagagaaaagtgtgataatgcacagactctgtccaaacactacaacttagggaaaccaaaggcagtgggagagaacaagtcaaggacagtgaagtgattcaaagcctctgagaacaacagcttcagGACCAAGGTCACAGCCT-CTCCCTCAATGGCCTTAGATTTACTTCTCATGGGGCATCTGCAGGGTTCCCAGGTGAGAACTGGCAAAGAGAACATGAAGGCACTTCCCAAATCTCCAGTAATACTGAGCTTGCTTTAGCTCTGTCTGGAAAAA--A-------------
s panTro5.chr14                542918 623 -  91965084 agacagaccctacgggg-aaaaaatacttttcaagatctctattccatgtgaggggaagggactcttttccatcccagacagcttcatcttagccttcctgagtcatgaaaa-gggGTATAATTAATAAAACATCTGTTGTCAGATTCAAGAAAATAATCTGTGGATGCTGCAGCCTG--AGGGGAGTAGAGGACAGAGGAAAATCAGCTGTACCGCTGGAGACTCCTTGTAAATGGTGCAGCCTAGAGAAAGAATGGCAAGAAATCATTGGAATTCAATTTCCAGAACATATACTGCTCccctacccaccaca-----tcacctcacc-----accaatatgattgatctggattaaagagaaaagtgtggaaaggcacagactccatctaaggactagaatttagggaaaccaaaggcagtgggagagaaaaagtcaaggacagtgaagggacttaaaacctctgagaccaacagcttcaAGAACAAGGTCACATCCC-CTCCCTCAATGACATTAGATTTACCTCTCATGGGGCATCTGCAGGGTGCGCAGGTGAGAACTGGCAAGGAGAACATGAAGGCACTTTCCAAATCTCCATTAGTACCGAGCTTGCTTTAGCTCTGTTTGGAAAAAGCA-------------
i panTro5.chr14             C 0 C 0
s panPan2.chr14                245995 623 - 107357366 agacagaccctacacgg-aaaaaatacttttcaagatctctattccatgtgaggggaagggactcttttccatcccagacagcttcatcttagccttcctgagtcatgaaaa-gggGTATAATTAATAAAACATCTGTTGTCAGATTCAAGAAAATAATCTGTGGATGCTGCAGCCTG--AGGGGAGTAGAGGACAGAGGAAAATCAGCTGTACCGCTGGAGACTCCTTGTAAATGGTGCAGCCTAGAGAAAGAATGGCAAGAAATCATTGGAATTCAATTTCCAGAACATATACTGCTCccctacccaccaca-----tcacctcacc-----accaatatgattgatctggattaaagagaaaagtgtggaaaggcacagactccatctaaggactagaatttagggaaaccaaaggcagtgggagagaaaaagtcaaggacagtgaagggacttaaaacctctgagaccaacagcttcaAGAACAAGGTCACATCCC-CTCCCTCAATGACATTAGATTTACCTCTCATGGGGCATCTGCAGGGTGCGCAGGTGAGAACTGGCAAGGAGAACATGAAGGCACTTTCCAAATCTCCATTAGTACCGAGCTTGCTTTAGCTCTGTTTGGAAAAAGCA-------------
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        10277 627 -     16452 taacagatgctacagag-acaaaatatttttcaagatctttattctatgtgagaggaagggattcttttccatcccagacagcttcatcttagccttcccacgtcatgaaaa-gggGTATAATTAATAAA-CAACTGGGGTCAGATTCAAGAAAATAATCTGTGGATGCTGCAGCCAGGAGGGGGAGTGGAGGATGGAGGAAAATCCGCTGTACCACCGGAGACTCcttgtaaagggtgcagcctagagaaaacacagcaagaaaacattggaagtcaatttccagaacatatactgctcccctgtccactaca-----tcacctcccctcctcaccaataggattaatctggattaaagagaaaagtgtggtaatgcacagactctgtccaaacactacaacttagggaaaccaaaggcagtgggagagaacaagtcaaggacagtgaagtgattcaaagcctctgagaacaacagcttcagGACCAAGGTCACAGCCT-CTCCCTCAATGGCCTTAGATTTACTTCTCATGGGGCATCTGCAGGGTTCCCAGGTGAGAACTGGCAAAGAGAACATGAAGGCACTTTCCAAATCTCCAGTAATACTGAGCTTGCTTTAGCTCTGTCTGGAAAAA--A-------------
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169067459 624 + 169600520 agacagactctacagag-aaaaaatacttttcaagatctttattctatgtgagcggaagggattaatttccgtcccagacagcttcatctgagcctccctgtgtcaTGGAAATGGGGTACAATTAATAAAACAACTGGGATAAGACTCAAGAAAATTATGTGTGGATGCTGCATCCAGGAGTGGGAGTACAGGATGGAGGAAAATCTGCTGTACCACTGGAGACTGCTTGTAAATGGTGAAACTTGGAGAAAGAACAGCAAGAAACCattggaattcaatttcaagaatatatactgctcccctgcccaccaca-----tcacctcctc-----aacaacatgattaatctggattagagagagaagtgtgacaatgcacagactctgtccaaggactagaactcagggaaaccaaaggcagtgggagagaacaagtcaaggagagtgaagtgatttaaagcctctaagaccaacagcttcagGACCAAGGTCACGACCCTCTCCCTCAGTGGCCCTAGATCTGCATCTCATGGGGCATCTGCAGGGTTCCCAGGTGAGAACTGGCAAAAACAAGGGGAAGACACATTCCCAATCTCT-GTGGTACTGAGCTTGTTTTAGCTCTGTTTGaaaaaa--a-------------
i rheMac8.chr7              N 0 I 31
s macFas5.chrUn_KE145882        36006 624 +    808388 agacagactctacagag-aaaaaatacttttcaagatctttattctatgtgaggggaagggattaatttccatcccagacagcttcatctgagccttcatgtgtcaTGGAAATGGGGTACAATTAATAAAACAACTGGGATAAGACTCAAGAAAATTATCTGTGGATGCTGCATCCAGGAGTGGGAGTACAGGATGGAGGAAAATCTGCTGTACCACTGGAGACTGCTTGTAAATGGTGAAACTTGGAGAAAGAACAGCAAGAAACCATTGGAATTCAATTTCAAGAATATATACTGCTCCCCTGCccaccaca-----tcacctcctc-----aacaacatgattaatctggattagagagaaaagtgtggcaatgcacagactctgtccaaggactagaactcagggaaaccaaaggcagtgggagagaacaagtcaaggagagtgaagtgatttaaagcctctaagaccaacagcttcagGACCAAGGTCACGACCCTCTCCCTCAGTGGCCCTAGATCTGCATCTCATGGGGCATCTGCAGGGTTCCCAGGTGAGAACTGGCAAAAACAAGGGGAAGACACATTCCCAATCTCT-GTGGTACTGAGCTTGTTTTAGCTCTGTTTGaaaaaa--a-------------
i macFas5.chrUn_KE145882    C 0 I 29
s macNem1.NW_012011211v1       212475 628 -   3745747 agacagaccctacagat-aaaaaatacttttcaagatctttattctatatgaggggaagggattattttccatccaagacagcttcaccttagccttcctgtgtcatgaaaa-gggGTATAATTAATAAAACAACTGGGGTCAGATTCAAGAGAATAATCTGTGGATGCTTCAGTCAGGAGGGGGAGCGGAGGATAGAGGAAAATCAGCTGTATCACTGGAGACTCcttgtaaggggagcagcacagagaaagaacagcaagaaaacactggaattcaatttcaagaatatatactgctcccctgcccaccgcatcacctcacctcctc-----accaataggattaatctggattaaagagaaaagtgtggcaacatacagactctgtctaaggactagaactaagggaaaccaaaggcagagggagagaaaaagtcaaggacagtaaagtgatttaaagcctctgagaccaacacctTCGGGAACAAGGTCAGTACCC-CTCCCTCAGTGACCTTAGATATACCTCTCACAGGACATCTGCAGGGTTCTCAGGTGAGAACTAGCCAAGACAACGTGAAGGCACCTTCTGAATCTCCAGCGTTACTGAGCTTACTTTAGTTCTGTCTGGaaaaa--c-------------
i macNem1.NW_012011211v1    C 0 I 14
s cerAty1.NW_012003680v1       543124 623 +    767749 agacagacccgacagat-aaaaaatacttttcaagatctttattctatatgaggggaagggattattttccatccaagacagcttcaccttagccttcctgtgccatgaaaa-ggggtataactaataaaacaactgaggtcagattcaagagaATAATCTGTGGATGCTTCAGCCAGGAGGGGGAGCAGAGGACAGAGGAAAATCAGCTGTATCACTGGAGACTCcttgtaaggggagcagcacagagaaagaacagcaagaaagcattggaattcaatttcaagaatatatactgctcccctgcccaccaca-----tcacctcctc-----accaacaggattaatctggattaaagagaaaagtgtggcaacacacagactctgtctaaggactagaactaagggaaaccaaaggcagagggagagaaaaagtcaaggacactaaagtgatttaaaacctctgagaccaacacctTCGGGAACAAGGTCAGTACCC-CTCCCTCAGTGACCTTAGATATACCTCTCACGGGGCATCTGCAGGGTTCTCAGGTGAGAACTAGCCAAGACAACGTGAAGGCACCTTCTGAATCTCCAGCGTTACTGAGCTTACTTTAGTTCTGTCTGGaaaaa--c-------------
i cerAty1.NW_012003680v1    C 0 I 14
s chlSab2.chr24                471782 623 -  84932903 agacagacccgacagat-aaaaaatacttttcaagatctttattctaaatgaggggaagggattattttccatccaagacagcttcaccttagccttcctgtgccatgaaaa-gggGTATAATTAATAAAACAACTGGGGTCAGATTCAAGAGAATAATCTGTGGATGCTTCAGCCAGGAGGGGGAGCGGAGGATAGAGGAAAATCAGCTGTATCACTGGAGACTCCTTGTAAGGGGAGCAGCATAGAGAAAGAACAGCAAGaaaacattggaattcaatttcaagaatatatactgctcccctcctcaccaca-----tcacctcctc-----gccaacaggattaatctggattaaagagacaagtgtggcaacacacagactctgtctaaggactagaactaagggaaaccaaaggcagagggagagaaaaagtcaaagacagtaaagtgatttaaagcctctgagaccaacacctTCGGGAACAAGGTCAGTACCC-CTCCCTCAGTGACCTTAGATATACCTCTCACGGGGCATCTGCAGGGTTCTCAGGTGAGAACTAGCCAAGACAATGTGAAGGCACCTTCTGAATCTCCAGCGTCACTGAGCTTACTTTAGTTCTGTTTGGaaaaa--c-------------
i chlSab2.chr24             C 0 I 14
s manLeu1.NW_012110885v1       224014 623 +    420018 agacagacccgacagat-aaaaaatacttttcaagatctttattctatatgaggggaagggattattttccatccaagacagcttcactttagccttcctgtgtcatgaaaa-gggGTATAATTAATAAAACAACTGGGGTCAGATTCAAGAGAATAATCTGTGGATGCTTCAGCCAGGAGGGGGAGCAGAGGACAGAGGAAAATCAGCTGTATCACTGGAGACTCcttgtaaggggagcagcacagagaaagaacagcaagaaagcattggaattcaatttcaagaatatatactgctcccctgcccaccaca-----tcacctcctc-----accaataggattcatctggattaaagagaaaagtgtggcaacacacagactctgtctaaggactagaactaagggaaaccaaaggcagagggagagaaaaagtcaaggacagtaaagtgatttaaagcctctgagaccaacacctTCGGGAACAAGGTCAGTACCC-CTCCCTCAGTGACTTTAGATATACCTCTCACGGGACATCTGCAGGGTTCTCAGGTGAGAACTAGCCAAGACAATGTGAAGGCACCTTCTGAATCTCCAGCGTTACTGAGCTTACTTTAGTTCTGTCTGGaaaaa--c-------------
i manLeu1.NW_012110885v1    C 0 I 14
s calJac3.chr10                251804 622 - 132174527 agacagatcctacagag-aaaaaatacttttcgacatctctattctatgtgaggggaagggattcttttccttcccagaccgtttcatcttagccttcctgtgtcatgaaaa-aggGTGTAATTAATAAAGCAACTGGGGTCAGATTCAGGAGAATAATCTGTGGATGTCGCAGCCAAGAGGGGGAGTAGAGGATGGAGGAAGATCGGCTGAACCACTGGAGACCCctcgtaaagggcacagcatagagaaggaacagcaagaaaacattgaaattcaatttccagaacgtaccctgctcccctgcccatcata-----tcacctcctc-----accagtacgattcatctggattaaagagacacgtgtggcgatg--aagactctg----------agaatttagggaaaccaaaggcaacgggagacaacaggtcaaggacagcgaagggatttaaaccctctgagaccaacagcttcagGACCAAGGTCACGG-CC-CTCCCTCGATGGCCTTAGATTTGCCTCTCGTGGGGCATCTGCAGGGTTCCCGGGTGAGAA-GGGCAAAAACAAGGTGAAGACAGTTTCCACCTCTCCAGTAGTACTGAGCTTGCCTCGGCTCTGTTTGGAAAAA--CAAAACAGTGACAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              13570 633 +    130757 agacagaccctaaagagaaaaaaatatttttcaagatctctattctatgtgaggggaagggATTCTTCTCCATCACAGACAGTTTCATCTTAGAGTTTCTGTGTCATGAAAA-GGGGTACAATTAATAAAACAACTGGGGTCAAATTCAAGAAAATAATATGTGGATACTGCAGCCAGGAGGGGGAGTAGAGGATGGAGGAAAATCAGCTGAACCACTGGAGACGCctcataaagggcacagcatagagaagaaacagcaagaaaacattggaattcaatttccagaacatatcttgctcccctgcccatcata-----tcacctcctc-----aacaatatgattaatctggattaaagagaaaagtgtggcaatg--aagactctgtctgaggactaaaatttatggaaaccaaaggcagcgggagacaacaagtcaaggacagtgaagggatttaaatcctctgagaccaacagcttcagGACCAAGATCATGGCCC-CTCCCTCAATGGCCTTAGATTTACCTCTCATGGGGCATCTGCAGGGCT-CCGGGTGAGAAGGGGCAAAAACAAGGTTAACACACTTTCCAAATCTCCAGTAGTACTGAGTTTGCTTTAGCTCTGTTTGGAAAAA--CAAAACAA-AACAA
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836   0 -   6934359 C

a score=-3890.000000
s hg38.chr15_KI270851v1_alt      3739 1 +    263054 -T
s panTro5.chr14                543541 1 -  91965084 -A
i panTro5.chr14             C 0 C 0
s panPan2.chr14                246618 1 - 107357366 -A
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        10904 1 -     16452 -T
i gorGor5.CYUI01007821v1    C 0 C 0
s calJac3.chr10                252426 1 - 132174527 C-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              14203 1 +    130757 C-
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836 0 -   6934359 C
e manLeu1.NW_012110885v1       224637 14 +    420018 I
e cerAty1.NW_012003680v1       543747 14 +    767749 I
e macNem1.NW_012011211v1       213103 14 -   3745747 I
e rheMac8.chr7              169068083 31 + 169600520 I
e chlSab2.chr24                472405 14 -  84932903 I
e macFas5.chrUn_KE145882        36630 29 +    808388 I

a score=165782.000000
s hg38.chr15_KI270851v1_alt      3740 40 +    263054 AACAACAACAAACACAAGCAGGACTATGGCCAGTGTTGGA
s panTro5.chr14                543542 40 -  91965084 AACAACAACAAACACAACCAGGACTTCCATCAGTGTTGGA
i panTro5.chr14             C 0 C 0
s panPan2.chr14                246619 40 - 107357366 AACAACAACAAACACAACCAGGACTTCCATCAGTGTTGGA
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        10905 40 -     16452 AACAACAACAAACACAAGCAGGACTATGGCCAGTGTTGGA
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169068114 39 + 169600520 aacaacaacaaaCATAA-CAGGACTAGGGTCAGAGCTGGA
i rheMac8.chr7              I 31 C 0
s macFas5.chrUn_KE145882        36659 39 +    808388 aacaacaacaaaCATAA-CAGGACTAGGGTCAGAGTTGGA
i macFas5.chrUn_KE145882    I 29 C 0
s macNem1.NW_012011211v1       213117 40 -   3745747 aacaaccacaaACATAACCAGGACTGGGGCCAGTGCTGGA
i macNem1.NW_012011211v1    I 14 C 0
s cerAty1.NW_012003680v1       543761 40 +    767749 aactaccacaaACATAACCAGGACTGGGGCCAGTGCTGGA
i cerAty1.NW_012003680v1    I 14 C 0
s chlSab2.chr24                472419 40 -  84932903 aacaaccacaaacataaccaGGACTAGGGCCAGTGTTGGA
i chlSab2.chr24             I 14 C 0
s manLeu1.NW_012110885v1       224651 40 +    420018 aactaccacaaACATAACCAGGACTGGGGCCAGTGCTGGA
i manLeu1.NW_012110885v1    I 14 C 0
s calJac3.chr10                252427 40 - 132174527 AACAACCACAAATATAACCAGGAATAAGCTCAGTTTTGGA
i calJac3.chr10             C 0 I 308
s saiBol1.JH378376              14204 40 +    130757 CACCACCACAAATATAACCAGTACTAAGCTCAGTTTTGGA
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836  0 -   6934359 C

a score=63412.000000
s hg38.chr15_KI270851v1_alt      3780 13 +    263054 AGCACTTTTCATT
s panTro5.chr14                543582 13 -  91965084 AGCGCCTTTCATT
i panTro5.chr14             C 0 C 0
s panPan2.chr14                246659 13 - 107357366 AGCGCCTTTCATT
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        10945 13 -     16452 AGCACTTTTCATT
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169068153 13 + 169600520 AGCACTTCTCTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        36698 13 +    808388 AGCACTTCTCTTT
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       213157 13 -   3745747 AGCACTTTTCATT
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       543801 13 +    767749 AGCACTTTTCATT
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                472459 13 -  84932903 AGCACTTTTTATT
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       224691 13 +    420018 AGCACTTTTCATT
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                252775 13 - 132174527 AGCACTTTTCATC
i calJac3.chr10             I 308 I 1
s saiBol1.JH378376              14244 13 +    130757 AGCACtttttttt
i saiBol1.JH378376          C 0 I 328
e colAng1.NW_012115910v1      6764836  0 -   6934359 C

a score=279184.000000
s hg38.chr15_KI270851v1_alt      3793 58 +    263054 G---AGACACTTGGAAGGAGGGCAAATCTGAGTCTCGTTACTGTGCAAATGTGCCACtgtg
s panTro5.chr14                543595 61 -  91965084 GGCAAGACACTAGGAAGGAGGGCAAATTCGAGGCCAGTTACTATGCAAATATGCCACTGTG
i panTro5.chr14             C 0 C 0
s panPan2.chr14                246672 61 - 107357366 GGCAAGACACTAGGAAGGAGGGCAAATTCGAGGCCAGTTACTATGCAAATATGCCACTGTG
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        10958 61 -     16452 GACAAGACGCTTGGAAGGAGGGCAAATCTGAGTCTCGTTACTGTGCAAATGTGCCACtgtg
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169068166 61 + 169600520 GGCAAGACACTAGGAAGGAGGGCAAATTTGAGGCTCATTACTGTGCAAATATGCCACtgtg
i rheMac8.chr7              C 0 I 588
s macFas5.chrUn_KE145882        36711 61 +    808388 GGCAAGACACTAGGAAGGAGGGCAAATTTGAGGCTCATTACTGTGCAAATATGCCACtgtg
i macFas5.chrUn_KE145882    C 0 I 346
s macNem1.NW_012011211v1       213170 61 -   3745747 GACAAGACACTTGGAAGGAGGGCAAATCTGAGGCTTGTTACTGCGCAAATATGCCACTGTG
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       543814 61 +    767749 GACAAGACACTAGGAAGGAGGGCAAATCTGAGGCTTGTTACTGCGCAAATATGCCACTGTG
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                472472 61 -  84932903 GACAAGACACTAGGAAGGAGGGCAAATCTGAGGCTTGTTACTGTGCAAATATGCCACTGTG
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       224704 61 +    420018 GACAAGATACTAGGAAGGAGGGCAAATCTGAGGCTTGTTACTGCGCAAATATGCCACTGTG
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                252789 57 - 132174527 -GCAGCA-CCTAGAAAGGAGGG--AATTTGAGGCTCGTTACTGCCCAAATATGCCACCGTG
i calJac3.chr10             I 1 C 0
s saiBol1.JH378376              14585 59 +    130757 -GCAACACCCTAGAATGGAGGGCAAATTTGAGGCTTGTTACTG-TGATATATGGCACTCTG
i saiBol1.JH378376          I 328 C 0
e colAng1.NW_012115910v1      6764836  0 -   6934359 C

a score=4095.000000
s hg38.chr15_KI270851v1_alt      3851 1 +    263054 a
s panTro5.chr14                543656 1 -  91965084 A
i panTro5.chr14             C 0 C 0
s panPan2.chr14                246733 1 - 107357366 A
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        11019 1 -     16452 a
i gorGor5.CYUI01007821v1    C 0 C 0
s macNem1.NW_012011211v1       213231 1 -   3745747 A
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       543875 1 +    767749 A
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                472533 1 -  84932903 A
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       224765 1 +    420018 A
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                252846 1 - 132174527 A
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              14644 1 +    130757 A
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836 0 -   6934359 C
e rheMac8.chr7              169068227 588 + 169600520 I
e macFas5.chrUn_KE145882        36772 346 +    808388 I

a score=43004.000000
s hg38.chr15_KI270851v1_alt      3852 31 +    263054 gtgtatgtgtgtgtgtgtgtgggggggtgCT
s panTro5.chr14                543657 19 -  91965084 GTGT------------GTGTGGTGGTGAGCT
i panTro5.chr14             C 0 C 0
s panPan2.chr14                246734 19 - 107357366 GTGT------------GTGTGGTGGTGAGCT
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        11020 31 -     16452 gtgtatgtgtgtgtgtgtgGGGGGGGGTGCT
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169068815 31 + 169600520 gtgtctgtgtgtgtgtgtgtgGTGGGGGACG
i rheMac8.chr7              I 588 N 0
s macFas5.chrUn_KE145882        37118 31 +    808388 gtgtctgtgtgtgtgtgtgtgGTGGGGGACT
i macFas5.chrUn_KE145882    I 346 C 0
s macNem1.NW_012011211v1       213232 25 -   3745747 ------GTGTGTGTGTGTTGGGGGGTGGACC
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       543876 25 +    767749 ------GTGTGTGTGTGTTGGGGGGTGGACC
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                472534 25 -  84932903 ------GTGTGTGTGTGTTGCGGGGTGGACC
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       224766 25 +    420018 ------GTGTGTGTATGTTGGGGGGTGGACC
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                252847 18 - 132174527 ------------GTGTGTCTGAG-GTGGGCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              14645 16 +    130757 ------------TTGTGTGTGGG---GGCCT
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836  0 -   6934359 C

a score=269293.000000
s hg38.chr15_KI270851v1_alt      3883 79 +    263054 TTGAGACATAGGGTCTTTGTGTAAAGTTACAATCTGATGTGATCGTCAACCACAGAATCC---TAAAA-AA-A---AATAGAGGCTG
s panTro5.chr14                543676 75 -  91965084 TTGAGACATAGGGTCTGTGTGTAAAGTTATAAT-TGATATAATCTTCAACCACAGAATCC---TAAAA-CA-------CAGAGCCTT
i panTro5.chr14             C 0 C 0
s panPan2.chr14                246753 75 - 107357366 TTGAGACATAGGGTCTGTGCGTAAAGTTATAAT-CGATATAATCTTCAACCACAGAATCC---TAAAA-CA-------CAGAGCCTT
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        11051 78 -     16452 TTGAGACATAGGGTCTTTGTGTAAAGTTACAATCTGATGTGATCGTCAACCACAGAATCC---TAAAA-AA-----AATAGAGGCTG
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169245173 81 + 169600520 TTGAGACACAGGGTTTGTGTGTAAAATTATAATCTGATGTGAACTTCGACCACAGAATCC---AAAAAAAAAA---AAAAAGGTCTG
i rheMac8.chr7              N 0 C 0
s macFas5.chrUn_KE145882        37149 74 +    808388 TTGAGACATAGGGTCTGTGTGTAAAGTAATAATCTGACGTAATCTTCAACCAGAGAATC----------ATAA---AAAACAGGCTG
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       213257 81 -   3745747 TTGAGACACAGGGTTTGTGCGTAAAATTATAATCTGATGTGAACTTCGACCACAGAATCC---AAAAAAAAAA---AAAAAGGTCTG
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       543901 80 +    767749 TTGAGACACAGGGTTTGTGCGTAAAATTATAATCTGATGTGAACTTCGACCACAGAATCC---AAAAA-AAAA---AAAAAGGTCTG
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                472559 83 -  84932903 TTGAGACACAGGGTTTGTGCGTAAAATTATAATCTGATGTGAACTTCGACCACAGAATCCaaaaaaaa-aaaa---aaaaaaGTCTG
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       224791 80 +    420018 TTGAGACACAGGGTTTGTGCGTAAAATTATAATCTGATGTGAACTTCGACCACGGAATCC---AAAAA-AAAA---AAAAAGGTCTG
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                252865 83 - 132174527 TTGAAACATAGGGTCCCTGATTAAAGTTAAAATCTGATGTGATTTTCTATCAAAGAATCC---TAAAA-AAAAAAAAAAAAAAAGTG
i calJac3.chr10             C 0 T 50912
s saiBol1.JH378376              14661 72 +    130757 TTGAGACATAGGGTCTGTGAGTAAAGTTAAACTATGATGTGATTTTTGACCAAAGAATCC---T------------AAAACAATGTG
i saiBol1.JH378376          C 0 I 4
e colAng1.NW_012115910v1      6764836  0 -   6934359 C

a score=361705.000000
s hg38.chr15_KI270851v1_alt      3962 74 +    263054 CCCCAAAGTTCCCATCGGTTCCTAGACTTGCCATGTGTCCGGACCCTATCAGTGCACCTAGAACTCCAGGGAAG
s panTro5.chr14                543751 73 -  91965084 CCCCAAAGT-CCCATCAGTTCCTGGACTCGCCATGTGTCTGGACCGTATCAGTGGATCCGGAGCTCCAGGGAAG
i panTro5.chr14             C 0 C 0
s panPan2.chr14                246828 73 - 107357366 CCCCAAAGT-CCCATCAGTTCCTGGACTCGCCATGTGTCTGGACCGTATCAGTGGATCCGGAGCTCCAGGGAAG
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        11129 74 -     16452 CCCCAAAGTTCCCATCGGTTCCTAGACTTGCCATGTGTCTGGACCCTATCAGTGCACCTAGAACTCCAGGAAAG
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169245254 74 + 169600520 CCCCAAAGTCCCCATCAGTTCCTGGACTCAACGTGTGTCTGGACTGTATCAGTGCATCTGGAGCTCCAGGGAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        37223 74 +    808388 CCCCAAATTTGTCATCAGTTCCGTGACTTCTCATGTGTCTGGACCGTATCAGTGCATCTGGAGCTCCAGGGAAG
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       213338 74 -   3745747 CCCCAAAGTCCCCATCAGTTCCTGGACTCAACGTGTGTCTGGACTGTATCAGTGCATCTGGAGCTCCAGGGAAG
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       543981 74 +    767749 CCCCAAAGTCCCCATCAGTTCCTGGACTCAACATGTGTCTGGACCGTATCAGTGCATCTGGAACTCCAGGGAAG
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                472642 74 -  84932903 CCCCAAAGTCCCCATCAGTTCCTGGACTCGACATGTGTCTGGACCGTATCAGTGCATCTGGAGCTCCAGGGAAG
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       224871 74 +    420018 CCCCAAAGTCCCCATCAGTTCCTGGACTCGACATGTGTCTGGACTGTATCAGTGCATCTGGAGCTCCAGGGAAG
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                202036 74 - 132174527 CCACAACATGCCTATCAGTTCCTGGACTCGCCATATGTCTGGACCGTATCAGTGCACCTGGAGCTCCAGCAAAG
i calJac3.chr10             T 50912 I 130
s saiBol1.JH378376              14737 74 +    130757 CCCCAAAGTCCCCATCAGTTCCTGGACTTGCCATATGCCTGTTTCATATCAGTGCATTTGGAGCTTAAGCGAAG
i saiBol1.JH378376          I 4 I 131
e colAng1.NW_012115910v1      6764836  0 -   6934359 C

a score=81408.000000
s hg38.chr15_KI270851v1_alt      4036 22 +    263054 GGGCTCCCTGGTGGCTTTAGTG
s panTro5.chr14                543824 22 -  91965084 GGGCTCCCTGATGGCTTTTGTG
i panTro5.chr14             C 0 C 0
s panPan2.chr14                246901 22 - 107357366 GGGCTCCCTGATGGCTTTTGTG
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        11203 22 -     16452 GGGCTCCCTGGTGGCTTTAGTG
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169245328 22 + 169600520 GGGTTCCCTGGTGGCTTTAGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        37297 22 +    808388 GGGCTCCCTGGTGGCTTTAGTG
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       213412 22 -   3745747 GGGTTCCCTGGTGGCTTTAGTC
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       544055 22 +    767749 GGGCTCCCTGGTGGCTTTAGTC
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                472716 22 -  84932903 GGGTTCCCTGGTGGCTTTAGTC
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       224945 22 +    420018 GGGTTCCCTGGTGGCTTTAGTC
i manLeu1.NW_012110885v1    C 0 C 0
e colAng1.NW_012115910v1      6764836  0 -   6934359 C
e saiBol1.JH378376              14811 131 +    130757 I
e calJac3.chr10                202110 130 - 132174527 I

a score=731728.000000
s hg38.chr15_KI270851v1_alt      4058 178 +    263054 ATTCCTTG-TTGCTGTGCTGAGGTCTCCCGGTAGATTATGTCGGGTGTTCTAAGGCCTATTTGCTACTGTAAGAGATGGTGGGAGAAGCAATTGCTGCCATTGAAAGAGCATTCTGAGTCAGGGCAAGGCCACTTCATACTGTGCTTGAGACGCTGGGAGGAGAA-TTCTCT---ATGAG---------CCC
s panTro5.chr14                543846 192 -  91965084 ATTCCTTGCTTGCCGTGCTGAGGTCTCCCTGTAGATTATGTTGGGTTTTCTAAGGCCTATTTTCTATTGTAAGAGGTGGTGGGAGAAGCAATTTCTGTCACTGAAAGAGCCTTCTGAGCCAGGGCACAGCCCCTTCCTACTGGGCTTGAGATTCTGGGAGGAAAAGTTCTCTGACAGGAGGAAAAAGTTCCC
i panTro5.chr14             C 0 C 0
s panPan2.chr14                246923 192 - 107357366 ATTCCTTGCTTGCCGTGCTGAGGTCTCCCTGTAGATTATGTTGGGTTTTCTAAGGCCTATTTTCTATTGTAAGAGGTGGTGGGAGAAGCAATTTCTGTCACTGAAAGAGCCTTCTGAGCCAGGGCACAGCCCCTTCCTACTGGGCTTGAGATTCTGGGAGGAAAAGTTCTCTGACAGGAGGAAAAAGTTCCC
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        11225 178 -     16452 ATTCCTTG-TTGCTGTGCTGAGGTCTCCCGGTAGATTATGTCGGGTTTTCTAAGGCCTATTTCCTACTGTAAGAGATGGTAGGAGAAGCAATTGCTGCCATCGAAAGAGCATTCTGAGTCAGGGCAAGGCCACTTCATACTGTGCTTGAGACGCTGGGAGGAGAA-TTCTCT---ATGAG---------CCC
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169245350 179 + 169600520 ATTCCTTGCTTGCTGTGCCGAGGTCTCCCTGTAGGCTTTGTTAGGTTTCCTAAGGTCTATTTTCTATTGTAGGAAGTGGTGTGAGAAGTAGTTGCTGTCCCTGAAGGAGCATTCAGAGCCAGGGCACAGTCACGTCACATTGAGCTTGAGACATTGGGAGAAAAA-TGCTCT---GTGAG---------CCC
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        37319 179 +    808388 ATTCCTCGCTTGCTGTGCTGAGGTCTCCCTGTAGATTATGTTGGGTTTTCTAAGGCCTATTTTCTATTCTAAGAGCTGTTGTGAGAAGTAATCGCTGTCGCTGAAGGAGCATTATGAGCCAGGGCACAGCCACTTCTTACTAGGCTTGAGATGCTGGGAGAAAAA-TTCTCT---GTAAG---------ACC
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       213434 179 -   3745747 ATTCCTTGCTTGCTGTGCCGAGGTCTCCCTGTAGGCTTTGTTAGGTTTCCTAAGGTCTATTTTCTATTGTAGGAAGTGGTGTGAGAAGTAGTTGCTGTCCCTGAAGGAGCATTCAGAGCCAGGGCACAGTCACGTCACATTGAGCTTGAGACATTGGGAGAAAAA-TGCTCT---GTGAG---------CCC
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       544077 179 +    767749 ATTCCTTGCTTGCTGTGCCGAGGTCTCCCTGTAGGCTTTGTTAGGTTTCCTAAGGTCTATTTTCTATTGTAGGAAGTGGTGTGAGAAGTAGCTGCTGTCCCTGAAGGAGCATTCTGAGCCAGGGCACAGTCACGTCACATTGAGCTTGAGACACTGGGAGAAAAA-TGCTCT---GTGAG---------CCC
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                472738 155 -  84932903 ATTCCTTGCTTGCTGTGCCGAGGTCTCTCTGTAGGCTTTGGTG------------------------TGTAGGAAGTGGTGTGAGAAGTAGCTGCTGTCCCTGAAGGAGCATTCTGAGCCAGGGCACAGTCACGTCACATTGAGCTTGAGACACTGGAAGAAAAA-TGCTCT---GTGAG---------CCC
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       224967 179 +    420018 ATTCCTTGCTTGCTGTGCCGAGGTCTCCCTGTAGGCTTTGTTAGGTTTCCTAAGGTCTATTTTCTATTGTAGGAAGTGGTGTGAGAAGTAGCTGCTGTCCCTGAAGGAGCATTCTGAGCCAGGGCACAGTCACGTCACATTGAGCTTGACACACTGGGAGAAAAA-TGCTCT---GTGAG---------TCC
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                202240 174 - 132174527 ATTCCTTGCTTGCTGTGCTAAGGTGACCCTGTGGATTATGTTGGGTTTTCTAAAGTGGATATCCTATTTTAAGATG-GGTGTGAGAATCAAT---TGTTACAGAAGGAGCATTCTGAGCCAGGGCACAGCCGCTTCAGACTGGGCTTCAGACGCTGG-GGGAGAA-TTCTAG---GTAAA---------CCC
i calJac3.chr10             I 130 C 0
s saiBol1.JH378376              14942 176 +    130757 ATTCCTTGCTTGCTGTGCTAAGGTGACCCTGTAGATTATGTTGGGTTTTCTAAGGTCTATTTCCCATTGTAAGAGGTGGTGTGAGAAGTAATTTCTGCCATGGAAGGAGCATCCTGAGACAGGGAACAGCCACTTCATACTGTGCTTGAGATGCT---TGGAGAC-TTCTCC---GTGAG---------CTC
i saiBol1.JH378376          I 131 C 0
e colAng1.NW_012115910v1      6764836   0 -   6934359 C

a score=2169763.000000
s hg38.chr15_KI270851v1_alt      4236 400 +    263054 AGACAGGAACTTTCCTGCAGGGCAGGAGCTGAGCTGCAGGGG-GCGCTCAGGGCGCACCCAGCACAGGATCCAGCCCTGGAGCAGGTGCACAGGAGGCTGGGGAGGGGTTTTCTCTCAGGAATTGAATGTTCTTTATTTCAAAGCAATAATAACCTAAAATCTAAATAAGAATGTAGTAAGTACTGATGTGTC-------------TTT-------------------------AAGTATTCTATTATATATGTAGCCTATACCTAACCAAA-TAATTGAAT---GCAAACAGCATTTAAAAGGAGAAATGTCTGGTCTTTTCAAATGTATTTATAGTTAGGAATTGAAGAGTGGTTTTATTAATTCAATGGGTGTTACTGTCGGAAGATACACT-CATCCCAGAATTT-AGATGTGCAGAGGTCAAGGCCCAGGAAAAGTTCAG
s panTro5.chr14                544038 400 -  91965084 AGACAGGACCTTCCCTGCAGGGCGGGAGCTGAGCGGCAGGGG-GCGCTCAGGGAGCACCCAGCACAGGACCCAGCCCTGGGGCAGGTGCACAGGAGGCTGGGGCAGGGTTTTCTCTCAGGAATTGAATGTTCCTTATTTCAAAGCAATAATGACCTAACATTTAAATAAGAATTTAGCAAGTACTGATGTGCC-------------TGT-------------------------AAGTATTTTATTGTATACGCAGCCTATACCTAACCCAA-TAATTTAAT---GCAAAACGGATTTAAAAGGAGAAATGTCTAGGTCTTTCAAATGTATTTCTAGTTAGGAATTGAGGGGTGGTTTTATTAATTCAATGGGTGTTACTCTCCGGAGACACACT-CATCCCAGAAGTT-AGACGTGCAGAGGGCAAGGCTCAGGAAAAGTTCAG
i panTro5.chr14             C 0 C 0
s panPan2.chr14                247115 400 - 107357366 AGACAGGAACTTCCCTGCAGGGCGGGAGCTGAGCGGCAGGGG-GCGCTCAGGGAGCACCCAGCACAGGACCCAGCCCTGGGGCAGGTGCACAGGAGGCTGGGGCAGGGTTTTCTCTCAGGAATTGAATGTTCCTTATTTCAAAGCAATAATGACCTAACATTTAAATAAGAATTTAGCAAGTACTGATGTGCC-------------TGT-------------------------AAGTATTTTATTGTATACGCAGCCTATACCTAACCCAA-TAATTTAAT---GCAAAACGGATTTAAAAGGAGAAATGTCTAGGTCTTTCAAATGTATTTCTAGTTAGGAATTGAGGGGTGGTTTTATTAATTCAATGGGTGTTACTCTCCGGAGACACACT-CATCCCAGAAGTT-AGACGTGCAGAGGGCAAGGCTCAGGAAAAGTTCAG
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        11403 396 -     16452 AGACAGGAACTTTCCTGCAGGGCAGGAGCTGAGCTGCAGGGG-GCGCTCAGGGCGCACCCAGCACAGGATCCAGCCCTGGAGCAGGTGCACATGAGGCTGGGGAGGGGTTTTCTCTCAGGAATTGAATG----TTATTTCAAAGCAATCATGACCTAAAATTTAAATAAGAATGTAGTAAGTACTGATGTGTC-------------TTT-------------------------AAGTATTCTATTATATATGTAGCCTATACCTAACCAAA-TAATTGAAT---GCAAGCAGCATTTAAAAGGAGAAATGTCTAGTCTTTTCAAATGTATTTATAGTTAGGAATTGAAGGGTGGTTTTATTAATTCAATGGGTGTTACTGTTGGAAGATACACT-CATCCCAGAAGTT-AGATGTGCAGAGGTCAAGGCCCAGGAAAAGTTCAG
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75870771 394 + 121039945 agACA-GAACTTCCATGCAGGGCAGGAGCTGAGCTGCAGGGG-GCGCTCAGGATGCACCCAGCACAGGATCCAGCCCTGGAGCAGGTGCACAGGAGGCTGGGAAGGGGTTTTCTCTCAGGGATTGAATGTTCATTATTTCAAAGCAATAATGACCTAACATTTAAATAAGAATTTAGCAAGTACTGATATGCC-------------TTT-------------------------AAGTATTTTATTGTATATGCAG-CTATACTTAACCAAA-TAATTTAAT---GCAAACCACATTTAAAAGGAGAAATGTCTAGGCTTTTCACATGTATTTATAGTTAGTAATTGAGGAGTGTTTTT----ATTCAATGAGTGTTACTATTGGGAAACACACT-CATCCTAGAAGTT-AGATGTGCAGAGGGCAAGGCCCAGGGAAAGTTCAG
i nomLeu3.chr6              N 0 C 0
s rheMac8.chr7              169245529 385 + 169600520 AGAAAGGAACTTCCCTGCAGGGCATTAGGTGAGCTGCAGAGG-GTGCTCAGGATGCACCCAGCACAGGATCCAGCTCTGGGGCAGGTGCACAGGAGGTTGGGGAGGAGTTTTCTCTCAGGGATTGAATATTCCTTATTTCAAAGCAATAATGACATAAAATTTAAATAAGAATTTAGCAAGTACTGATGTGTC-------------TTT--------------------------AGTATTCTCTTGCATACACAGCCTTTACC--------------TAAT---GCAAACCATATTTAAAAGAAGAAATGTCTAGGCCTTTCAAATGTATTTATCGTTAGGAATTGAGGGGTGCTTTTATTAATTCAATGGGTGTTACTATCGGGAGACACACT-CATCCCAGAAGTT-AGATGTGCAGAGGGCAAGGCCCAGG-AAAGTTCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        37498 436 +    808388 AGACAGGAACTTCCATGCAGGGTGGAAGCTGAGCTTCAGTGG-GT-TTTGGGATGCACCCTGCACAGGATCCAGCCCTCGAGCAGGAATACAGGAGACTGAGGAGGTATTTCCTCTTAGGGACTGGATATTCCTTATTTCAAAGCAATCATGACATAAAAGTTAAATAAATATTTAGCAAGTACTGATGTGTTAAATAAATAAATATTTAGCAAGTACTGATGTGTACATATACAAGTATTCTCTTGTATATGTAGTCTATACCTACTTCAA--AAATTAAT---GTAAACCACCTTTAAAAGAAGAAATGTCTAGACCCTTCAAATGTATTTATAGTCAGGAATTGAGGGGTTGTTTTATTAACTCAGTGGGTGTTACTATCGAGAGACACACT-CATCCCAGAAGTT-GGTTGTGCAGAGGGCAAGGCTCAGGAAAAGTTCAC
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       213613 385 -   3745747 AGAAAGGAACTTCCCTGCAGGGCATTAGTTGAGCTGCAGAGG-GTGCTCAGGATGCACCCAGCACAGGATCCAGCTCTGGGGCAGGTGCACAGGAGGTTGGGGAGGAGTTTTCTCTCAGGGATTGAATATTCCTTATTTCAAAGCAATAATGACATAAAATTTAAATAAGAATTTAGCAAGTACTGATGTGTC-------------TTT--------------------------AGTATTCTCTTGCATACACAGCCTTTACC--------------TAAT---GCAAACCATATTTAAAAGAAGAAATGTCTAGGCCTTTCAAATGTATTTATCGTTAGGAATTGAGGGGTGCTTTTATTAATTCAATGGGTGTTACTATCGGGAGACACACT-CATCCCAGAAGTT-AGATGTGCAGAGGGCAAGGCCCAGG-AAAGTTCAG
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       544256 386 +    767749 AGAAAGGAACTTCCCTGCAGGGCATTAGCTGAGCTGCAGAGG-GTGCTCAGGATGCACCCAGCACAGGATCCAGCTCTGGGGCAGGTGCACAGGAGGTTGGGGAGGAGTTTTCTCTCAGGGATTGAATATTCCTTATTTCAAAGCAATAATGACATAAAATTTAAATAAGAATTTAGAAAGTACTGATGTGTC-------------TTT--------------------------AGTATTCTCTTGCATACACAGCCGTTACC--------------TAAT---GCAAACCATATTTAAAAGAAGAAATGTCTAGGCCTTTCAAATGTATCTATCGTTAGGAATTGAGGGGTGGTTTTATTAATTCAATGGGTGTTACTATCTGGAGACACACT-CATCCCAGAAGTTAAGATGTGCAGAGGGCAAGGCCCAGG-AAAGTTCAG
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                472893 386 -  84932903 AGAAAGGAACTTCCCTGCAGGGCATTAGCTGAGCTGTAGAGG-CTGCTCAGGATGCACCCAGCACAGGATCCAGCTCTGGGGCAGGTGCACAGGAGGGTGGGGAGGAGTTTTCTCTCAGGGATTGAATATTCCTTATTTCAAAGCAATAATGACATAAAATTTAAATAAGAATTTAGCAAGTACTGATGTGTC-------------TTT--------------------------AGTATTCTCTTGCATACACAGCCGTTACC--------------TAAT---GCAAACCATATTTAAAAGAAGAAATGTCTAGGCCTTTCAAATGTATCTATCGTTAGGAATTGAGGGGTGGTTTTATTAATTCATTGGGTGTTACATTCGGGAGACACACT-CATCCCAGAAGTTAAGATGTGCAGAGGGCAAGGCCCAGG-AAAGTTCAG
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       225146 385 +    420018 AGAAAGGAACTTCCCTGCAGGGCATCAGCTGAGCTGCAGAGG-GTGCTCAGGATGCACCCAGCACAGGATCCAGCTCTGGGGCAGGTGCACAGGAGGTTGGGGAGGGGTTTTCTCTCAGGGATTGAATATTCCTTATTTCAAAGCAATAATGACATAAAATTTAAATAAGAATTTAGCAAGTACTGATGTGTC-------------TTT--------------------------AGTATTCTCTTGCATACACAGCCGTTACC--------------TAAT---GCAAACCGTATTTAAAAGAAGAAATGTCTAGGCCTTTCAAATGTATCTATCGTTAGGAATTGAGGGGTGGTTTTATTAATTCAGTGGGTGTTACTATCAGGAGACACACT-CATCCCAGAAGTT-AGATGTGCAGAGGGCAAGGCCCAGG-AAAGTTCAG
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                202414 395 - 132174527 AGACAGGAGCTTCCCTGCAGGGCAGGAGCTGAGCTGCAGGGG-GCGCTCAGGACGCACCCAGCACAGGACCC------GGAGCAGGTGCACAGGAGGCTGGGGAGGGGTTTCCTCTCAAGAACTGAATATTCCTTATTTCAAAGCAATAATGACATAACAGTTAAATAAGTATTTAGCAAGCACTGAAGTGTC-------------TTT-------------------------AAGTATTCTCTTGTGTATGTGGCCTATACCCAACTCAAAAAAACTAAT---GCAAACCACATTTAAAAGAAGAAATGTCTAAGCCTCTCAAAGGTAATTATAGTTAGAAATTGA-GGGTGGTTTTATTAATTCAGTGGGTGTTACTATCGGGAGACACACTACATCCCAGAAGTC-AGACGTGCAGAGGGGAAGGTCCAGGAAACACTCAG
i calJac3.chr10             C 0 I 50917
s saiBol1.JH378376              15118 399 +    130757 AGACAGGAACTTCCCTGCAGGGCAGGAGCTGAGCTGCAGGGGTGCACTCAGGATGCGCCCAGCACAGGACCCAGCCCTGGAACAGGTGCACAGTAGGAGGGGAGGGTTTTTTCCCTCTGGGATTGAACATTCGTTTTTTCAAATCAGTAATGACATAAAATTTAAATAAGAATTTAGTAAGTACTGATATGTC-------------TTT-------------------------AGGTATTCTCTCACATATGCAGCCTATACCTAACCCAA------TAATTTAGCAAACCAAACTTCAAAGGAGAAATGTCTAGGCCTTTCAAATGTAATTATAGTTAGGAACTGAGGGGTGATTTTATTAATTCAGTGGGTGTTACTATCAGGAGACACACT-CATCCCAGAAGTT-AGATGTGCAGAGGGCAAGGCCCAGGAAATGCTCAG
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836   0 -   6934359 C

a score=1651887.000000
s hg38.chr15_KI270851v1_alt      4636 281 +    263054 GTTGTCAGGGTGCCATATGAACAAGAAATGACATTGAGGACAATGTCCTGGGAGATTCTGGTTTTCTGTAAAACGAGTTCTGTCTTCATGGACTTCTGAGCATAACAGAGGGCAAATATCATTAAACAAAGTTCAGGGCAGGGAGCTCTGCATCCCACTGTGGCGTGGTCCGTGTGTCACCTATCTTCTTCCTCAGGTTGAGGTGGCTTGAGCTATGAAATACCTGCCTCGTGAATATGCAAATGCACTGCTGTCTACCGAGGTACATACAGATCTGTCCT
s panTro5.chr14                544438 278 -  91965084 ATTGTCAGTGAGCCATATGAACAGGGAATCACGTTGAGGACCATGTCCTGTGAGATTCTGGGTTTCTGTGAGAGGAGTTCTGTCTTCATGGACTTCTGGGCATGTCAGAGGACAAATAT---TAAACAAAGTTCAGGGCAGGGAGCTCAGCATCCCACTGTGGTGTGGTCCACATGTCACCTGTCTTCTTCCTCAGGGTGGCGTGGCCTGATCTATGAAAAACCTGCCTCATGAATATGCAAATGCACTGGTGTCTACTGAGGTAAATACAGATCTGTCCT
i panTro5.chr14             C 0 C 0
s panPan2.chr14                247515 278 - 107357366 ATTGTCAGTGAGCCATATGAACAGGGAATCACGTTGAGGACCATGTCCTGTGAGATTCTGGGTTTCTGTGAGAGGAGTTCTGTCTTCATGGACTTCTGGGCATGTCAGAGGACAAATAT---TAAACAAAGTTCAGGGCAGGGAGCTCAGCATCCCACTGTGGTGTGGTCCACATGTCACCTGTCTTCTTCCTCAGGGTGGCGTGGCCTGATCTATGAAAAACCTGCCTCATGAATATGCAAATGCACTGGTGTCTACTGAGGTAAATACAGATCTGTCCT
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        11799 281 -     16452 GTTGTCAGGGTGCCATATGAACAAGAAATGACATTGAGGACAATGTCCTGGGAGATTCTGGTTTTCTGTAAAACGAGTTCTGTCATCATGGACTTCTGAGCATAACAGAGGGCAAATATCATTAAACAAAGTTCAGGGCAGGGAGCTCTGCATCCCACTGTGGTGTGGTCCACGTGTCACCTATCTTCTTCCTCAGGTTGAGGTGGCTTGAGCTATGAAATACCTGCCTCGTCAATATGCAAATACACTGCTGTCTACCGAGGTACATACAGATCTGTCCT
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75871165 281 + 121039945 GTTGTCAGCGTGCCACATGAGCAAGGAATCACATTGATGACAATGTCTTCTGAGATTCCAGGTTTCTGTGAGAAGAATTCTGTCTGCAAGAACTTCTGAGCATGTCAGTGAACAAATATCATTAAACAAAGTTCAGGGCAGGGAGCTCGGCATCCCACTGTAGTGTGGTCCATGTGTCACCTATCTTCTTCCTCAGGTTGAGGTGGCTTGAGCTATGAAATACCTGCCTCATGAATATGCAAGTACACTGCTGTCTACCGAGGTACATACAGATCTGTCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169245914 280 + 169600520 GTTGTCAGTGTGCCATGTGAAAAAGGAATCACATTGAGGACAATGTCCTGTGAGATTCTGGTTTTCTGTAAGAGGAGTTCTGTCTTCATGGACTTCTAAGCATGTCAGATGACAAATATCATTAAACAA-GTTCAGGTCATGGAGCTCAGCATCCCACTGTGGAGTGGGCCGTGTGTCACCTATCTTCTTCCCCAGGATGGGGTGGCTTGAGTTATGAAATACCTGCCTCATGAATATGCAAATGCACTGGTGTCTACCGAAGTAAATACAGATCTGTCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        37934 281 +    808388 CTTGACAGTGAGCCACAGGAACAAGGAATCACATTGAGGACCATGTCCTGTGAGATTCTGGGTTTCTGTAAGACGAGTTCTGTCTTCATGGACATCTGAGCATGTCCGAGAACAAATATCATTAACCAATGATCATGGCATGGAGCTCTGTATCCCGCTGTGGCGTGGTCCACGTGTCACCTATCTTCTTCCTCAGGGTGGGGTGGCCTGAGCTATGAAATACCTGCCTCATGAATATGCAAATGCACTGGTGTCTACCGAGGTAAATACAGATCTGTCCT
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       213998 280 -   3745747 GTTGTCAGTGTGCCATGTGAAAAAGGAATCACATTGAGGACAATGTCCTGTGAGATTCTGGTTTTCTGTAAGAGGAGTTCTGTCTTCATGGACTTCTAAGCATGTCAGATGACAAATATCATTAAACAA-GTTCAGGTCATGGAGCTCAGCATCCCACTGTGGAGTGGGCCGTGTGTCACCTATCTTCTTCCCCAGGATGGGGTGGCTTGAGTTATGAAATACCTGCCTCATGAATATGCAAATGCACTGGTGTCTACCGAAGTAAATACAGATCTGTCCT
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       544642 279 +    767749 GTTGTCCGTGTGCCGTGTGAAAAAGGAATCACATTG-GGACCATGTCCTGTGAGATTCTGGGTTTCTGTAAGAGGAGTTCTGTCTTCATGGACTTCTAAGCATGTCAGATGACAAATATCATTAAACAA-GTTCAGGTCATGGAGCTCAGCATCCCACTGTGGAGTGGGCCGTGTGTCACCTATCTTCTTCCCCAGGGTGGGGTGGCTTGAGCTATGAAATACCTGCCTCATGAATATGCAAATGCACTGGTATCTACCGAGGTAAATATAGATCTGTCCT
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                473279 280 -  84932903 GTTGTCAGTGTGTCATGTGAAAAAGGAATCACATTGAGGACAATGTCCTGTGAGATTCTGGTTTTCTGTAAGAGGAGTTCTGTCTTCATGGACTTCTAAGCATGTCAGATGACAAATATCATTAAACAA-GTTCAGGTCATGGAGCTCAGCATCCCACTGTGGAGTGGGCCACGTGTCACCTATCTTCTTCCCCAGGGTGGGGTGGCTTGAGCTATGAAATACCTGCCTCATGAATATGCAAATGCACTGGTGTCTACCGAGGTAAATACAGATCTGTCCT
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       225531 280 +    420018 GTTGTCCGTGTGCCGTGTGAAAAAGGAATCACAGTGAGGACAATGTCCTGTGAGATTCTGGTTTTCTGTAACAGGAGTTCTGTCTTCATGGACTTCTAAGCATGTCAGATGACAAATATCATTAAACAA-GTTCAGGTCATGGAGCTCAGCATCCCACTGTGGAGTGGGCCGTGTGTCACCTATCTTCTTCCTCAGGGTGGGCTGGCTTGAGCTATGAAATACCTGCCTCATGAATATGCAAATGCACTGGTGTCTAGCGAGGTAAATATAGATCTGTCCT
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                253726 281 - 132174527 GTTGCCAGTGAGCCATAGGAACAAGGAATCACACTGAGGACCATGCCCTGTGAGACTCTGGATTTCTGTGAGAGGAGTTCTGTCTTCACGGACTTCTGAGCACGCCAGAGGACAAATACCATTAAACCAAGTTCAGGGCAGGGAGCTCAGCATCCCACGGTGGCCTGGTCCACGTGCCACCTCTCTTCCTCCTCAGGCTGGGGTGGCTTGAGCTATGAAATACCTGCCTCATGAATATGCAAATGCACTGGTGTCTACCGAGGTAAATACAGATCTGTCCT
i calJac3.chr10             I 50917 C 0
s saiBol1.JH378376              15517 280 +    130757 TTTGTAAGTGTGCCATAGGAACAAGGACTCACACTGAGGACCATGTTCTGTGAGACTCTGGGTTTCTG-GAGAGGGATTCTGTCTTCATGGACTTCTGAGAACACCAGAGGACAAATATCATTAAACAAATTTCCAGGCAGGAAGCTCAGCATCCCACTGTGGCATGGTCCAGGTGCCAACTCTCTTCTTCCTCAGGGTGGGGTGGCTTGAGCTATGAAACACCTGCCTCATGAATATGCAAATTCACTGGTGTCTACCGAGGTAAATACAGATCTGTCCT
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836   0 -   6934359 C

a score=2452121.000000
s hg38.chr15_KI270851v1_alt      4917 463 +    263054 TGCCCAGAGAGCATCACACAACAACCACATCCCTCCCCTACAGAAGCCCCCAGAGCACAGCACCTCACCATGGACTGGACCGGGAGGATCCTCCTCTTGGTGGCAGCAGCCACAGGGAAGAGAATCCTAAGTTCCAGGGCTGATGAGGGGACTGGGTCCAGTTAAGTGGAGTCTCAACCACTTCTCTGTCCTCTCCACAGGTGCCCATTCCCAGGTCCAATCGGTGCAGTCTGGGGCTGAGGTGAGGAAACCTGGGTCCTCAGTGAAGGT----------GATCCCAGATACACCTTCACCTTCCACTACATACACTGGGGGCGACAGGCCCCTGGAAAAGGGCTTGAGTGGATGGAACGTGTTGATCCTGAAGATGGTGAAACAATATATGCACAGAA-TTCCAGGGCAGAGTCACCACGACCTGGGACACGTCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATC
s panTro5.chr14                544716 471 -  91965084 TGCCCAGAGAGCATCACACAGCAGCCACATCCCTCCCCTACGGAAGCCCCCAGAGCACAGCACCTCACCATGGACTGCACCTGGAGTCTCCTCCTCTTGGTGGCAGCAGCTACAGGCAAGAGAATCCTCAGTCCCAGGGCTGATGAGGTGACTGGGTCCAGTTAAGTGGGGTCTCATCCA---CTCTGTCCTCTCCACAGGCACCCACGCCCAGGTCCAGCTGGTACAGTCCGGGGCTGAGGTGAAGAAGCCTGGGGCCACCGTGAAAATCTCCTGCAAGGCTTCCGGATACACCCTCACCGAATTATCCATGCACTGGGTGCGACAGGCTCCTGGAAAACGGCTTGAGTGGATGGGAGGTTTTGATCCTGAAGATGGTGAAACAATATACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCGAGGACACGTCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATC
i panTro5.chr14             C 0 C 0
s panPan2.chr14                247793 471 - 107357366 TGCCCAGAGAGCATCACACAGCAGCCACATCCCTCCCCTACGGAAGCCCCCAGAGCACAGCACCTCACCATGGACTGCACCTGGAGTCTCCTCCTCTTGGTGGCAGCAGCTACAGGCAAGAGAATCCTCAGTCCCAGGGCTGATGAGGTGACTGGGTCCAGTTAAGTGGGGTCTCATCCA---CTCTGTCCTCTCCACAGGCACCCACGCCCAGGTCCAGCTGGTACAGTCCGGGGCTGAGGTGAAGAAGCCTGGGGCCACCGTGAAAATCTCCTGCAAGGCTTCCGGATACACCCTCACCGAATTATCCATGCACTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGAGGTTTTGATCCTGAAGATGGTGAAACAATATACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCGAGGACACGTCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATC
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        12080 471 -     16452 TGCCCAGAGAGCATCACACAACCACCACATCCCT-CCCTACAGAAGCCCCCAGAGCACGGCACCTCACCATGGACTGGACCGGGAGGATCCTCCTCTTGGTGACAGCAGCTACTGGGAAGAGAATCCTAAGTTCCAGGGCTGATGAGGGGACTGGGTCCAGTTAAGTGGGGTCTCAGCCTCTTCTCTGTCCTCTCCACAGGTGCCCATTCCCAGGTCCAATAGGTGCAGTCTGGGGCTGAGGTGAGGAAACCTGGGTCCTCAGTGAAAGTCTACTGCAAGGATTCCAGATACACCTTCACCTTCCACTACATACACTGGGGGCGACAGGCCCCTGGAAAAGGGCTTGAG-GGATGGGACGTGTTGATCCTGAAGATGGTGAAACAATATATGCACAGAA-TTCCAGGGCAGAGTCACCATGACCTGGGACACGTCTACAGGCACAGCCTACATGGAGCTGAGCAGACTGAGATC
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169246194 474 + 169600520 TGCCCAGAGAGCATCACACAACAACCACATCCCTCCCCTACAGACGCCCCCAGAGCACAGCACCTCATCATGGACTGGACCTGGAGGATCCTCCTCTTGGTGGCAGCAGCTACAGGTAAGAGAATCCTCAGTTCCAGGGCTGATGAGGGGACTGGGTCCAGTGAAGTGGTGTCTCATTCACTCCTCTGTCCTCTCCACAGGCGCCCACTCTGAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCCGTGAAAATCTCCTGCAAGGCTTCTGGATACACCTTCACCGACTACTACCTGCACTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGACGTGTTGATCCTGAAGATGGTGAAGCAATACACGCACAGAAGTTCCAGGACAGAGTCACCATCACCGCGGACACGTCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATC
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        38215 474 +    808388 TGCCCAGAGAGCATCACACAACAACCACATCCCTCCCCTACAGACGCCCCCAGAGCACAGCACCTCACCATGGACTGGACCTGGAGGATCCTCCTCTTGGTGGCAGCAGCTACAGGTAAGAGAATCCTCAGTTCCAGGGCTGATGAGGGGACTGGGTCCGGTCAAGTGAGATCTCATACACTCCTGTGTACTCTCCACAGGCGCCCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGATCCTCAGTGAAGGTCTCCTGCAAGGCTTCCGGATACACCTTCACTGACTACTACATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGAAATCAACCCAAAAACTGGTGGCACAAACTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGAGACACATCGACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATC
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       214278 474 -   3745747 TGCCCAGAGAGCATCACACAACAACCACATCCCTCCCCTACAGAAGTCCCCAGAGCACAGCACCTCATCATGGACTGGACCTGGAGGCTCCTCCTCTTGGTGGCAGCAGCTACAGGTAAGAGAATCCTCAGTTCCAGGGTTGATGAGGGGACTGGGTCCAGTGAAGTGGTGTCTCATTCACTCCTCTGTCCTCTCCACAGGCGCCCACTCCGAGGTCCAGCTGGTACAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCCGTGAAAATCTCCTGCAAGGCTTCTGGATACACCTTCACCGACTACTACCTGCACTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGACGTATTGATCCTGAAGATGGTGAAGCAATACACGCACAGAAGTTCCAGGACAGAGTCACCATCACCGCGGACACGTCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATC
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       544921 474 +    767749 TGCTGAGAGAGCATCACACAACAACCACATCCCTCCCCTACAGACGCCCCCAGAGCACAGCACCTCACCATGGACTGGACCTGGAGGATCCTCCTCTTGGTGGCAGCAGCTACAGGTAAAAGAATCCTCAGTTCCAGGGCTGATGAGGGGACTGGGTCCAGTGAAGTGGTGTCTCATTCACTCCTCTGTCCTCTCCACAGGCGCCCACTCTGAGGTACAGCTGGTGCAGTCTGGGGCTGAGGTGAGGAAGCCTGGGGCCACCGTGAAAATCTCCTGCAAGGCTTCCGGATACACCTTCACCGACTACTACCTGAGCTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGATGCATTGATCCTGAAGATGGTGAAGCAATATACGCACAGAAGTTCCAGGACAGACTCACCATGACTGCGGACACATCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATC
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                473559 474 -  84932903 TGCCCAGAGAGCATCACACAACAACCACATCCCTCCCCTACAGAAGCCCCCAGAGCACAGCACCTCATCATGGACTGGACCTGGAGGCTCCTCCTCTTGGTGGCAGCAGCTACAGGTAAGAGAATCCTCAGTTCCAGGGCTGATGAGGGGACTGGGTCCAGTGAAGTGGTGTCTCATTCACTCCTCTGTCCTCTCCACAGGCGCCCACTCTGAGGTACAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCTGTGAACGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGACTACTACCTGCACTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGACGCATTGATCCTGAAAATGGTGAATCAAAATATGCACAGAAGTTCCAGGACAGACTCACCATGACTGCGGACACATCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATC
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       225811 474 +    420018 TGCCGAGAGAGCATCACACAACAACCACATCCCTCCCCTACAGACGCCCCCAGAGCACAGCACCTCACTATGGACTGGACCTGGAGGCTCCTCCTCTTGGTGGCAGCAGCTACAGGTAAAAGAATCCTCAGTTCCAGGGCTGATGAGGGGACTGGGTCCAGTGAAGTGGTGTCTCATTCACTCCTCTGTCCTCTCCACAGGCGCCCACTCTGAGGTACAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCACCGTGAAAATCTCCTGCAAGGCTTCTGGATACACCTTCACCGACTACTACCTGCACTGGGTGCGACAGGCCCCTGGAAAAGGGCTTGAGTGGATGGGACGTGTTGATCCTGAAGATGGTGAAGCAGACTACGCACAGAAGTTCCAGGACAGACTCACCATGACTGCGGACACGTCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATC
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                254007 473 - 132174527 TGCCCAGAGAGCATCACACAACAACTACATCCCTCCCCTACAGAAA-CCCCAGAGCACAGCACCTCACCATGGACTGGACCTGGAGGATCCTCCTCTTGGTGGCAGCAGCTACAGGTAAGAGAATCCTCAGTCCCAGGGCTGATGAGAGAACTGGGTCCAGTCAGGTGTGATCTCACCCACTCCTGTGTCCGCTCCACAGGTGCCCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGAGGCCTCCGTGAAGGTCTCCTGCAAGGCTTCCGGATATACCTTCACTGACTACTACATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTCGAGTGGATGGGATGGATCTACCCTGGTAATGGTAACACAAAGTACGCACAGCAGTTCCAGGGCAGAGTCACCATGACCAGGGACACGTCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGACC
i calJac3.chr10             C 0 I 281
s saiBol1.JH378376              15797 473 +    130757 TGCCCAGAGAGCATCACACAACAACCACATCCCTCTCCTACAGAAA-CCCCAGAGCACAGCACCTCACCATGGACTGGACCTGGAAGATCCTCTTCTGGGTGGCAGCAGCTACAGGTAAGAGAATCCTCAGTTCTAGGACTGATATAGGAACTGGGTCCGGTCAGGTGAGATCTCACCCACTCCTGTAACCTCTCCACAGGTGTCCACTCTCAAGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCTTCCATGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACTGACTACTACATGAACTGGGTGCGACAGGCCCCTGGAAAAGGGCTTGAGTGGATGGGAGATATTGATCCTGAAAATGGTGAAACAAGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACAGCAGACACGTCCACAAGCACAGCCTACATGGAGCTGAGAAGCCTGAGATC
i saiBol1.JH378376          C 0 C 0
e nomLeu3.chr6               75871446   0 + 121039945 C
e colAng1.NW_012115910v1      6764836   0 -   6934359 C

a score=433297.000000
s hg38.chr15_KI270851v1_alt      5380 84 +    263054 TGAGGACACAGCCGTATATTAATGTGCAAGACACGCAGTGTGAAAACCCACATCCTGAGAGTGTCAGAAACCTTGAGGAAGGAG
s panTro5.chr14                545187 84 -  91965084 TGAGGACACGGCCGTGTATTACTGTGCAACAGACACAGTGTGAAAACCCACATCCTGAGAGTATCAGAAACCCTGAGGAAGGAG
i panTro5.chr14             C 0 C 0
s panPan2.chr14                248264 84 - 107357366 TGAGGACACGGCCGTGTATTACTGTGCAACAGACACAGTGTGAAAACCCACATCCTGAGAGTATCAGAAACCCTGAGGAAGGAG
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        12551 84 -     16452 TGAGGACACGGCTGTATATTAATGTGCAAGACACACAGTGTGAAAACCCACATCCTGAGAGTGTCAGAAACCTTGAGGAAGGAG
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169246668 83 + 169600520 TGAGGACACGGCCGTGTATTACTGTGCAACAGACACAGTGTGAAAA-CCACATCCTGAGAGTGTCAGAAACCCTGAGGGAGGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        38689 83 +    808388 TGAGGACACGGCCGTGTATTACTGTGCGAGAGACACAGTGTGAAAA-CTACATCCTGAGAGTGTCAGAAACCCTGAGGGAGGAG
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       214752 83 -   3745747 TGAGGACACGGCCGTGTATTACTGTGCAACAGACACAGTGTGAAAA-CCACATCCTGAGAGTGTCAGAAACCCTGAGGGAGGAG
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       545395 83 +    767749 TGAGGACACGGCCGTGTATTACTGTGCGAGACACACAGTGTGAAAA-CCACATCCTGAGAGTGTCAGAAACCCTGAGGGAGGAG
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                474033 83 -  84932903 TGAGGACACGGCCGTGTATTACTGTGCCACAGCCACCGTGTGAAAA-CCACATCCTGAGAGTGTCACAAACCCTGAGGGAGGAG
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       226285 84 +    420018 TGAGGACACGGCCGTGTATTACTGTACGAGAGACACAGTGTGAAAACCCACATCCTGAGAGTGTCAGAAACCCTGAGGGAGGAG
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                254761 82 - 132174527 TGATGACATGGCCGTGTATTAGAGTGCACGACACACAGTGTGAAAA-CCACATCGTGAGAGTGTCAGAAACCCCG-GGGAGGAG
i calJac3.chr10             I 281 T 47194
s saiBol1.JH378376              16270 83 +    130757 TGAGGACACAGCCGTGTATTACTGTGCAAGATACACAGTGTGAAAA-ACACATCCTGAGAGTGTCAGAAACCCTGAGGGAGGAA
i saiBol1.JH378376          C 0 C 0
e nomLeu3.chr6               75871446  0 + 121039945 C
e colAng1.NW_012115910v1      6764836  0 -   6934359 C

a score=1789605.000000
s hg38.chr15_KI270851v1_alt      5464 411 +    263054 GCAGCTGTGCTGGGGGTGAGAAGATGACAGGATTTATGAGGTTTAAACGTGTTTAGAAAATGGGTTAAGTAATTGAGGAAAAGAAGCAATAGAAAGATGTATACACTCTAATTATATAGGAAATAGTCTTTTCAACTTTCACCCTGTAA-GTAAAATTCACAGAGTGGGAAAGGCAGCAatcaatcaggctgatgcaaacactcccatggaagccttgtggggacataacattttaaaatcgaatggataaatcatttggagcaggattgctttatcacgtggtaagactaaacataatttctaagaagtggccaacatttcttccaaaatgtctttgccactttt-tttacattacatttattttaaaa-cacttttaggatcacagcaaatttgagtagaagaaacagagtt
s panTro5.chr14                545271 409 -  91965084 GCAGCTGTGCTGGGGCTGAGGAGATGACAGGATTTATGAAGTTTAAATCTGTTTAGAAAATGGGTTAAGTAATTGAGTAAAAC-AGCAATGGAAAGATGTGTATACTATCATTATGTAGGAAATAGTATTTTCAACTGTCACCCTGTAA-GTAACACTCACAGAGTGGGAAAggcagccatcaatcaagctgatgcaaacattcccgtggaggctttgtgggaacat-acattttaaaattggatgtataaatcattagaaacaggattgcttgatctcatggtaagactaaatataatttccaagaagtggccgaaatttcttccagaatgtctttgcccttcct-tttacattgaatttattttaaag-gagttttaggatcgcagcaagtttgagtagaagaaacagagtt
i panTro5.chr14             C 0 C 0
s panPan2.chr14                248348 409 - 107357366 GCAGCTGTGCTGGGGCTGAGGAGATGACAGGATTTATGAAGTTTAAATCTGTTTAGAAAATGGGTTAAGTAATTGAGTAAAAC-AGCAATGGAAAGATGTGTATACTATCATTATGTAGGAAATAGTATTTTCAACTGTCACCCTGTAA-GTAACACTCACAGAGTGGGAAAggcagccatcaatcaagctgatgcaaacattcccgtggaggctttgtgggaacat-acattttaaaattggatgtataaatcattagaaacaggattgcttgatctcatggtaagactaaatataatttccaagaagtggccgaaatttcttccagaatgtctttgcccttcct-tttacattgaatttattttaaag-gagttttaggatcgcagcaagtttgagtagaagaaacagagtt
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        12635 408 -     16452 GCAGCTGTGCTGGGGGTGAGAAGATGACAGGATTTATGAGGTTTAAACGTGTTTAGAAAATGGGTTAAGTAATTGAGAAAAAG-AAGAATAGAAAGATGTATACACTCTAATTATATAGGAAATAGTCTTTTCAACTTTCACCCTGTAA-GTAAAATTCACAGAGTGGGAAAggcagcaatcaattaggctgatgcaaacactcccatggaggctctgtggggacat-acattttaaaatcgagtggataaatcatttggagcaggattgctttatcacgtggtaagactaaacataatttctaagaagtggccaacatttcttcca-aatgtttttgccaCTCTT-TCTACATTATATTTAttttaaaa-cacttttaggatctcagcaaatttgagtagaagaaacagagtt
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169246751 401 + 169600520 GCAGCTGTGATGGGGCTGTAAAGATGACAGGATTTATGAGGTCTAAAT-TATTTAGAAGATGGGTTAAGTCACTGAGTAAAAGTAGAAATAGAAAGATATATACATTCCAATCATATAGGAAATAATCTTTTCAACTTTCACCCTATAA-GTAACATTCACAGAGTGGGAAAggcagccatcaatcaggctgatgcaaacattcc---------tttgtgaggacat-aaattttaaaatcgaatggataaatcatttggagcaggattgcttgatcacatggtaagactaaacataatttctaaaaagtggccgacatttctaccaaaatgtctttggcagtcccatttacattaaatttattttaaaa-catttttaggattacagcaaatttgagtagaataaacacagtt
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        38772 410 +    808388 GCAGCTGTGCTGGGGCTGAGGAGATGACAGGATTTATGAGGTTTAAACATGTTTGGAAAATGGGTTAAGTAACTGACGAAAAGAAGCAATAGAAAGACGTATACACTCTAATTATATAGGAAATACTGTTTTCAACTTTCACCCTGTAA-GTAACATTCATGGAGTGGGAAAggcggccatcaatcaggctgatgcaaacattcccatggagg-cttttggggacat-acattttaaaattgaatggatacatcacttggagcaggattacttgatcacaaggtaagactaaatataagttctaagaagtggccgacatttcttcctaaatgtctttgccactCCC-TTTACACTGCATTTATTTGAAAGCCCTttttaagctcacagcaaagttgagtagaataaacagagtt
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       214835 401 -   3745747 GCAGCTGTGATGGGGCTGTAAAGATGACAGGATTTATGAGGTCTAAAT-TATTTAGAAGATGGGTTAAGTCACTGAGTAAACGTAGAAATAGAAAGATATATACATTCCAACCATATAGGAAATAATCTTTTCAACTTTCACCCTATAA-GTAACATTCACAGAGTGGGAAAggcagccatcaatcaggctgatgcaaacattcc---------tttgtgaggacat-aaattttaaaatcgaatggataaatcatttggagcaggattgcttgatcacatggtaagactaaacataatttctaaaaagtggccgacatttctaccaaaatgtctttggcagtcccatttacattaaatttattttaaaa-catttttaggattacagcaaatttgagtagaataaacacagtt
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       545478 400 +    767749 GCAGCTGTGCTGGGGCTGTGAAGATGACAGGATTTGTGAGGTCTAAAT-TATTTAGAAGATGGGTTAAGTCACTGAGTAAAAGTAGAAATAGAAAGATATAT--ATTCCAATCATATAGGAAATAATCTTTTCAACTTTCACCCTATAAGGTAACATTCACAGAGTGGGAAAggcagccatcaatcaggctgatgcaaacattcc---------tttgtgaggacac-aaattttaaaatcgaatggataaatcatttggagcaggactgcttgatcacatggtaagactaaacataatttctaaaaagtggccatcatttctaccaaaatgtctttgccaGTCCCAtttacattaaatttattttaaaa-catttttaggattacagcaaatttgagtagaataaacagagtt
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                474116 400 -  84932903 GCAGCTGTGCTGGGGCTGTGAAGATGACAGGATTTATGAGGTCTAAAT-TATTTAGAAGATAGGTTAAGTCACTGAGTAAAAGTAGAAATAGAAAGATATATACATTCCAATCATATAGGATATAATGTTTTCAACTTTCACCCTATAA-GTAACATTCACAGAGTGGGAAAGGCAGCCATCAATCTGGCTGATGCAAACATTCC---------tttgtgaggacat-aaattttaaaatcgaatggataaataatttggaccaggagtggttgatcacatggtaagcctaaacataatttctaaaaagtggccgtcatttctaccaaaatgtctttgccagtcct-tttgcattAAATTTAttttaaaa-catttttaggattacagcaaatttgactagaataaacagagtt
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       226369 400 +    420018 GCAGCTGTGCTGGGGCTGTGAAGATGACAGGATTTATGAGGTCTAAAT-TATTTAGAAGATGGGTTAAGTCACTGAGTAAAAGTAGAAATAGAAAGATATATACATTCCAATCATATAGGAAATAATCTTTTCAACTTTCACCTTATAA-GTAACATTCACAGAGTGGGAAAggcagccatcaatccagctgatgcaaacattcc---------tttgtgaggacat-aaattttaaaatcgaatggataaatcatttggagcaggattgcttgatcacatggtaagactaaatataatttctaaaaagtggccgacatttctaccaaaatgtctttgccagtcct-tttgcattaaatttattttaaaa-catttttaggattacagcaaatttgagtagaataaacagagtt
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                207649 400 - 132174527 GCAGCTGTGCTGGAGCTGAGGAGATGACAGGACGTATGAGGTTTACATGTGTTTAGAAAATGGGTTAAGTAATTGAGGGAAAGAAGCAATAGAAAGACGTATATGTTCTAATTATATA-GAAACGGTA-TTTCAACTGTCCCCCCGTAA-GTAGCACTCACAGAGGGGGAAAggcggcaatgaatcaagctgaggcaaacgtt-ccctggaggcttcgtg-ggacac-a-ggtttaaaatcaaacgtacaaatcatcaggaacagcattgctgcatcacacggtaagactaAATCACGTTTATAA---GTGGCCAAA--TTTCCCCAGAATGTCTTAGCCGGTCCt-tttacactgaattcattttatag-caggtttaggatcacagcagatctgagaagaagtggcaaagtt
i calJac3.chr10             T 47194 I 593
s saiBol1.JH378376              16353 405 +    130757 GCAGCTGTCCTGGGGCTGAAGAGATGACAGGACATATGAGGTTTAAACGTGTTTAGAAAATGGGTTAAGTTATGAATGAAAAGAAGCAATAGAAGGATGTATACACTCTGATTGTATA-GAAACAGTA-TTTCAACTTCCATCCTGTAA-GTAACACCCACAGAGTGGGAAAggcagcaatcaatccagctgatgcagacattcccctggaggctttatg-gggcat-agggtttaaaatcaaatgtataaatcattaggaacaagattgctgcatcacatggtaagactaaatataatttataagatgtggccaaa--tttttccaaaatgtcttagcccctctt-tttacattgaattcattttatag-cagttttagggtcacagcagagctgaagagaagaagcaaagtt
i saiBol1.JH378376          C 0 C 0
e nomLeu3.chr6               75871446   0 + 121039945 C
e colAng1.NW_012115910v1      6764836   0 -   6934359 C

a score=88968.000000
s hg38.chr15_KI270851v1_alt      5875 17 +    263054 cccatgtattcctgccc
s panTro5.chr14                545680 17 -  91965084 cccatgcactcctgccc
i panTro5.chr14             C 0 I 53
s panPan2.chr14                248757 17 - 107357366 cccatgcactcctgccc
i panPan2.chr14             C 0 I 53
s gorGor5.CYUI01007821v1        13043 17 -     16452 cccatgtactcctgccc
i gorGor5.CYUI01007821v1    C 0 C 0
s rheMac8.chr7              169247152 17 + 169600520 cccacatactcccgccc
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        39182 17 +    808388 cccacatactcccgccc
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       215236 17 -   3745747 cccacatactcccgccc
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       545878 17 +    767749 cccacatactcccgccc
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                474516 17 -  84932903 cccacatactcccgccc
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       226769 17 +    420018 cccacatactcccgccc
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                208642 17 - 132174527 cccgtgtactcctgccc
i calJac3.chr10             I 593 C 0
s saiBol1.JH378376              16758 17 +    130757 cccgtgtactcctgccc
i saiBol1.JH378376          C 0 C 0
e nomLeu3.chr6               75871446  0 + 121039945 C
e colAng1.NW_012115910v1      6764836  0 -   6934359 C

a score=159398.000000
s hg38.chr15_KI270851v1_alt      5892 50 +    263054 aagatacgcacagacttctccgtgatcaataccctgcactgaagtaataa
s gorGor5.CYUI01007821v1        13060 50 -     16452 aagacacgcacagacttctccatgatcaataccctgcactgaagtaataa
i gorGor5.CYUI01007821v1    C 0 I 4
s rheMac8.chr7              169247169 50 + 169600520 aagacatgcacagccttctctgtgatcaacaccctgcactgaagtaataa
i rheMac8.chr7              C 0 I 4
s macFas5.chrUn_KE145882        39199 50 +    808388 aagacatgcacagccttctccatgatcaacaccctgcactgaagtaataa
i macFas5.chrUn_KE145882    C 0 I 4
s macNem1.NW_012011211v1       215253 50 -   3745747 aagacatgcacagccttctctgtgatcaacaccctgcactgaagtaataa
i macNem1.NW_012011211v1    C 0 I 4
s cerAty1.NW_012003680v1       545895 50 +    767749 aagacacgcacagccttctctgtgatcaacaccctgcactgaagtaataa
i cerAty1.NW_012003680v1    C 0 I 4
s chlSab2.chr24                474533 50 -  84932903 aagacacgcacagccttctctgtgatcaacaccctgcactgaagtaataa
i chlSab2.chr24             C 0 I 4
s manLeu1.NW_012110885v1       226786 50 +    420018 aagacacgcacagccttgtctgtgatcaacaccctgcactgaagtaataa
i manLeu1.NW_012110885v1    C 0 I 4
s calJac3.chr10                208659 49 - 132174527 cacacgtgctcagccttccctgctgtcaac-ccctgtaccagagtcataa
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              16775 50 +    130757 cacacgggctcagccttccctgctgtcaacaccctgcaccagagtcataa
i saiBol1.JH378376          C 0 C 0
e nomLeu3.chr6               75871446  0 + 121039945 C
e panPan2.chr14                248774 53 - 107357366 I
e panTro5.chr14                545697 53 -  91965084 I
e colAng1.NW_012115910v1      6764836  0 -   6934359 C

a score=737186.000000
s hg38.chr15_KI270851v1_alt      5942 161 +    263054 ----cttgcaactgacaaacccgcatggacacattaATTGTTTCCTTTTCTGGCGTCCCCTAGTATAACAAGCCTAAACTATCTTGAAACACCCC----------GGGTTCCTCAAGCGGATTACTGGGAATGATGCCAGGTAGAGGGAAAGTGGGTGGGGACGTTCCTCTTTGC
s panTro5.chr14                545750 171 -  91965084 ----gttacagaggatgaatctccacagacacatTGGTTGTTTCCTTTTCTGGTGGTCCCTAGTATAACAAGCCTCAACTATCTTGAAGCACCCCAGGTTCAAGTGGATTCTTCAAGTGGGTTACTGGGAATGATGCCAGGTAGAGGGAAAGTGGGTGGGGCCATTCCTCTTTGC
i panTro5.chr14             I 53 C 0
s panPan2.chr14                248827 171 - 107357366 ----gttacagaggatgaatctccacagccacatTGGTTGTTTCCTTTTCTGGTGGTCCCTAGTATAACAAGCCTCAACTATCTTGAAGCACCCCAGGTTCAAGTGGATTCTTCAAGTGGGTTACTGGGAATGATGCCAGGTAGAGGGAAAGTGGGTGGGGCCATTCCTCTTTGC
i panPan2.chr14             I 53 C 0
s gorGor5.CYUI01007821v1        13114 161 -     16452 ----cttgcaactgatgaacccgcatggacacattaATTGTTTCCTTTTCTGGCGTCCCCTAGTATAACAAGCCTAAACTATCTTGAAACACCCC----------GGGTTCCTCAAGCGGATTACTGGGAATGATGCCAGGTAGAGGGAAAGTGGGTGGGGACGTTCCTCTTTGC
i gorGor5.CYUI01007821v1    I 4 C 0
s rheMac8.chr7              169247223 161 + 169600520 ----cttgcaacagatgaacccacatggacacattaattgtctccTTTTCTGGTCGTCCCTGGTGTAACAAGCCTAAGCTATCTTGAAGCACCCC----------GGGTTCTTCTAGTGCATTACATGAAATGATGCCAGGTAGAGAGAAAGTGAGTGGGGACATTCCTCCTTTC
i rheMac8.chr7              I 4 C 0
s macFas5.chrUn_KE145882        39253 161 +    808388 ----cttgcaacggatgaacccacgtggacacattcattgtTTCCTTTTCTGGTGGTCCCTGGTGTAACAAGCCTAAGCTACCTTGATGTACCCC----------AGGTTCTTCAAGTGGGTCACTGGGAATTACGCCAGGTAGAGGGAAAGTGGGCGGGGCCATTGCTCTTTGC
i macFas5.chrUn_KE145882    I 4 C 0
s macNem1.NW_012011211v1       215307 161 -   3745747 ----cttgcaacagatgaacccacatggacacattaattgtctccTTTTCTGGTGGTCCCTGGTGTAACAAGCCTAAGCTATCTTGAAGCACCCC----------GGGTTCTTCTAGTGCATTACATGAAATGATGCCAGGTAGAGGGAAAGTGAGTGGGGACATTCCTCCTTTC
i macNem1.NW_012011211v1    I 4 C 0
s cerAty1.NW_012003680v1       545949 161 +    767749 ----cttgcaacagatgaacccacatggacacattcattgtctccTTTTCTGGTGGTCCCTGGTGTAACAAGCCTAAGCTATCTTGAAGCACCCT----------GGGTTCTTCTAGTGCATTACATGAAATGACACCAGGTAGAGGGAAAGTGAGTGGGGATGTTCCTCCTTTC
i cerAty1.NW_012003680v1    I 4 C 0
s chlSab2.chr24                474587 161 -  84932903 ----cttgcaacagatgaacccacatggacacattaATTGTCTCCTTTTCTGGTGGTCCCTGGTGTAACAAGCCTAAGCTATCTTGAAGCACCCT----------GGGTTCTTCCAGTGCATTACATGAAATGATGCCAGGTAGAGGGAAAGTGAGTGGGGACGTTCCTCCTTTC
i chlSab2.chr24             I 4 C 0
s manLeu1.NW_012110885v1       226840 161 +    420018 ----cttgcaacagatgaactcacatggacacattaattgtctccTTTTCTGGTGGTCCCTGGTGTAACAAGCCTAAGCTATCTTGAAGCACCCT----------GGGTTCTTCCAGTGCATTACATGAAATGACACCAGGTAGAGGGAAAGTGAGTGGGGACGTTCCTCCTTTC
i manLeu1.NW_012110885v1    I 4 C 0
s calJac3.chr10                208708 164 - 132174527 agcagttacggcggatgaacctgcacagacacatTGGGTGTTTCCTTTTCTGGTGCTCCCTGGTACAACAGGCCCCAATTATCTTGAAGCACCCC----------AGATTCTTCAACTGGGTTACTGGGAATGATGCCAGGCAGAGGGAAAGTGGGT-GGGCCATCCCCCTTCAC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              16825 164 +    130757 agcagttacagtggatgaaactacacagacacatTGGTCGTTTCCTTTTCTGGTGGTCCCTTGTGCAACAAGCCCCAATTATCTGGAAGCATCCC----------AGATTCTTCAACTGGGTTACTGGGAATGATGCCAGGCAGAGGGAAAGTGGGT-GGGCCATTTCCCTTTAC
i saiBol1.JH378376          C 0 C 0
e nomLeu3.chr6               75871446   0 + 121039945 C
e colAng1.NW_012115910v1      6764836   0 -   6934359 C

a score=590310.000000
s hg38.chr15_KI270851v1_alt      6103 114 +    263054 ACTCTTTCCTCAAGAATCCATAAAATGTACATTGATTTGGAGCTCATCTGACT--TGTTTTTC-TATGCCCCTTCCCAGAGGGTAAGGTCTCCAAGCATTTACAGcagaggtcccca
s panTro5.chr14                545921 116 -  91965084 ACTCTTTCCTCAAGGATCCATAAAATGTACATTTACATGGAGCTCCTCTTTCTCCTGGTTTTA-TATGCCCCTTCCCCAAGGGTAAGGTTTCCCAGTGTTTACAGcaggggtcccca
i panTro5.chr14             C 0 I 2357
s panPan2.chr14                248998 116 - 107357366 ACTCTTTCCTCAAGGATCCATAAAATGTACATTTACATGGAGCTCCTCTTTCTCCTGGTTTTA-TATGCCCCTTCCCCAAGGGTAAGGTTTCCCAGTGTTTACAGcaggggtcccca
i panPan2.chr14             C 0 I 384
s gorGor5.CYUI01007821v1        13275 116 -     16452 ACTCTTTCCTCAAGAAACCATAAAATGTACATTGATTTGGAGCTCATCTGACTCTTATTTTTC-TATGCCCCTTTCCAGACGGTAAGGTCTCCAAGCATTTACAGcagaggtcccca
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75871446 117 + 121039945 ACTCTATCTTCAAGGGTCCATAAAATGTACATTTACTTGGAGCTCCTCTTTCTCCTGGTTTTTGCATGCCCCTTCCCTGAGGGTAAGGTTTCCAAGTGTTTACAGAaggcgtcccca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169247384 116 + 169600520 ACTGTTTCCTCAAGAATCCATAAAATGTAGATTGATTTAGAGCTTATCTGACTCCTGGTTTTC-TATGCCCCTACCAAGAGGATAAGGCCTGCAGGCATTTACAGcaggggtcccca
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        39414 115 +    808388 ACTCTTTCCTCAAGCATCCATAAAATGTACATTGACTTGGAGCTCCTGTTTCTCCTGGTTTTA-TAGGCCCCTCC-CCTAGGGTAAGGTTTCCAAGTGTTTACAGCTggggtcccca
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       215468 116 -   3745747 ACTGTTTCCTCAAGAATCCATAAAATGTAGATTGATTTAGAGCTTATCTGACTCCTGGTTTTC-TATGCCCCTACGAAGAGGATAAGGCCTGCAGGCATTTACAGcaggggtcccca
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       546110 116 +    767749 ACTGCTTCCTCAAGAATCCATAAAATGTAGATTGATTTAGAGCTTATCTGACTCCTGGTTTTC-TATGCCCCTACCAAGAGGATAAGGCCTGCAGGCATTTACAGcagggatcccca
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                474748 116 -  84932903 ACTGCTTCCTCAAGAATCCATAAAATGTAGATTGATTTAGAGCTCATCTGACTCCTGGTTTTC-TATGCCCCTACCAAGAGGATAAGGCCTCCAGGCATTTACAGcaggtgtcccca
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       227001 116 +    420018 ACTGCTTCCTCAAGAATCCATAAAATGTAGATTGATTTAGAGCTTATCTGACTCCTGGTTTTC-TATGCCCCTACCAAGAGGATAAGGCCTCCAGGCATTTACAGcaggggtcccca
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                208872 116 - 132174527 ACTCTTTCCTCAAGGGTCAAAAAAATGCACATTGACTTGGAGATCCTGTTTCTCCTGGTTTTC-TATGTCCCTTCCCGGAGCGTAAAGTCTACAAGCATTTACAGTagggtttccca
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              16989 116 +    130757 ATTCTTTCCTCAAGGGTCCAAAAAACGCACATTGACTTGGGGATCCTCTTTCTCCTGGTTTTC-TATGTCCCTTCCTAGAGGGTACGGTCTCCAGGCATTTACAGcaggagttgcca
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836   0 -   6934359 C

a score=442798.000000
s hg38.chr15_KI270851v1_alt      6217 138 +    263054 acccctaggcagtgaaccaga-actggtcagcagcctgttagaaaccaggcagca---cagcaggtgagc---g---gcgggtgagcatcactgcctgagctccgcctcttgtcagatcagctgtgcactagattctcctaggatcca
s gorGor5.CYUI01007821v1        13391 138 -     16452 acccctaggcagtgaaccaga-actggtcagcagcctgttagaaaccaggccgca---cagcaggtgagc---g---gtgggtgagcatcactgcctgagctccgcctcttgtcagatcagctgtgcactagattctcctaggatcca
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75871563 142 + 121039945 atccccaggctgtggatgcgt-taaggtgtgcagtgtgctaggaaccgggccata--gctggagatgagt---gcatttgagctggcatcactgcctgagctccgcctcctgtcagatcagctgtgcattagattctcctaagagccg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169247500 141 + 169600520 gcccctaggcagtgaaccagt-actggtcagcagcctgagagaaggcagttcacacagcaggaggtgagc---g---gtgggtgagcattactgcctgagctctgcctcctgtcagatcagctgcgcattagattaccctaggagccg
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        39529 144 +    808388 atccccacgctgtggatccgt-taaggtgtgtgttgtgttaggaaccaggtcgcacagtagcagttgagtgcag---gcgagcgagcatcactgcctgagctccgcctcccgtcagatcagctgcacattagattatcctacaagcag
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       215584 141 -   3745747 gcccctaggcagtgaaccagt-actggtcagcagcctgagagaacgcaggtcgcacagcaggaggtgagc---g---gtgggtaagcattactgcctgagctccgcctcctgtcagatcagctgcgcattagattatcctaggagccg
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       546226 141 +    767749 gcccctaggcagtgaaccagt-atgggtcagcagcctgagagaaggcaggtcgcacagcaggaggtgagc---a---gtgggtgagcatcactgcctgagctccgcctcctgtcagatcagctgcacattagattatcctaggagccg
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                474864 142 -  84932903 gcccctaggcagtgaaccagttaccggtcagcagcctgagagaaggcaggtcgcacagcaggacgtgagc---g---gtgggtgagcatcactgcctgagctccgcctcctgtcagatcagctgcgcattagattaccctaggagccg
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       227117 138 +    420018 aacgctaggcagtgaacaagt----ggtccgcagcctgttagaaaccaggccgcccagcctgaagtgcgt---g---gtgggtgagcatcactgcctgagctctgcctcctgtcagatcagctgcgcattagattatcctaggagccg
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                208988 144 - 132174527 actccctggctgtggaccctt-taaggtgtgcagtgtgttagggactggaccgcacagcaggaggtaagt---gggggtgagggagcaccactggccgagctctgcctgctgtcagatcagctgtgaattagagtctcctgggagccg
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              17105 144 +    130757 aaacccaggctgtggactcct-taaggtgtgcagtgtgttaggagccgggccgcacagcaggagatgagt---gggagcctgtgagcatcattgcctgagctccccctgctgtcagatcacttgtgcattagattctcctaggagccg
i saiBol1.JH378376          C 0 C 0
e panPan2.chr14                249114 384 - 107357366 I
e panTro5.chr14                546037 2357 -  91965084 I
e colAng1.NW_012115910v1      6764836   0 -   6934359 C

a score=3357044.000000
s hg38.chr15_KI270851v1_alt      6355 604 +    263054 aattctattgtgaactgggcatgcaaaggacctagtttgagtgctccctatgagaatctaatgcttgatgaatgcaggtggagtaagttcatcccataatcactcaccgccatcatccatggaaaaattgtctgccacgaaaccgttccctggtgccaaaaatgttgggga-ccactgGTGTAGAGGAAGGTCTGTGCCTGTGAAAGGCCAGCAGCTTCTGGTGAATCCCATAATCAATGTCCTTTAATGAGAAGTGAAGACTTTGGCCATGAGGGCTTTCATGAATAATGCCCTTCAGTTGAATTCAAAACACTATAAGCTCTTGGGGGGTGTTTCTGGATAAAGGCCTTTGTGAAGAAAATACAAACACATGCATGGGATCCAGGCAGGAA-AAAAGCTTCCCTTAGAAAGTGGTTTGGTACCTGGAAGGAGCTCTCAGGGTTGGGCACTGGACC----CCTTGCTGGCTGCACTTTAGCCAGAGGCCTGAGCCTGATTGATCTTGCAGCGAGAGAGCCTCACTGGGGTCACAGGTTACCAAAATGCCTGTCATCTTCCAGCTGAGCAAGCCCATCTGCATGCTTGTCACTGTC-AACCCCATGAGGGG
s panTro5.chr14                548394 603 -  91965084 aattctattgtgaactgtgcatgcaaggaacctaggttgagcactccctatgagagtctaatgcctaatgattgcagggggaacaggttcatcccaaaaccacctgctgccatcatccatggaaaaattctcttccaccaaactgttccctggtgccaaaaaggttgggga-c-ACTGGTGTAGAGGCAGGTCTGTTCCTCGGAAAG-CCAGCAGCTTCTAGTGAATCCCCTAATTAATGTCCTTTAATGACAAGTGGAGACTTTGGTCATGAGGGCCTTCGTGAATAATGCCCTACAGTTGGATTCAGAACATTATAAGCTCTTGGGGGGTGTTTCTGGATAAAGCCCTTTGTGCAGAAAATGCAGACACATCCATGGGATCCATGCAGGAA-AAAAGCTTCCTTTACGAAGTGGTTTGGCACCTGGAAGGAGCTCTCAGGGTTGGGCACTGTACC----CTTTGCTGGCTGCACTTTAGCCAGAGGGCTGAGCCTGATTGGTCTTGCAGTGGGAGAGCTTTCCTGAGGTCAAAGGTTACAAAAATGCCTGTCATCTTCCAGCTGAGCAAGCCCGTCTGTGTGCTTGTCAGTGTCAAACCCCATGAGGGG
i panTro5.chr14             I 2357 C 0
s panPan2.chr14                249498 603 - 107357366 aattctattgtgaactgtgcatgcaaggaacctaggttgagcactccctatgagagtctaatgcctaatgattgcagggggaacaggttcatcccaaaaccacctgctgccatcatccatggaaaaattctcttccaccaaactgttccctggtgccaaaaaggttgggga-c-ACTGGTGTAGAGGCAGGTCTGTTCCTCGGAAAG-CCAGCAGCTTCTAGTGAATCCCCTAATTAATGTCCTTTAATGACAAGTGGAGACTTTGGTCATGAGGGCCTTCGTGAATAATGCCCTACAGTTGGATTCAGAACATTATAAGCTCTTGGGGGGTGTTTCTGGATAAAGCCCTTTGTGCAGAAAATGCAGACACATCCATGGGATCCATGCAGGAA-AAAAGCTTCCTTTACGAAGTGGTTTGGCACGTGGAAGGAGCTCTCAGGGTTGGGCACTGTACC----CTTTGCTGGCTGCACTTTAGCCAGAGGGCTGAGCCTGATTGGTCTTGCAGTGGGAGAGCTTTCCTGAGGTCAAAGGTTACAAAAATGCCTGTCATCTTCCAGCTGAGCAAGCCCGTCTGTGTGCTTGTCAGTGTCAAACCCCATGAGGGG
i panPan2.chr14             I 384 C 0
s gorGor5.CYUI01007821v1        13529 604 -     16452 aattctattgtgaactgagcatgcaaaggacctagtttgagtgctccctatgagaatctaatgcctgatgaatgcaggtggagtaagttcatcccataatcactcaccgccatcatccatggaaaaattgtctgccacgaaaccgttccctggtgccaaaaatgttgggga-ccactgGTGTAGAGGAAGGTCTGTGCCTGTGAAAGGCCAGCAGCTTCTGGTGAATCCCATAATCAATGTCCTTTAATGAGAAGTGAAGACTTTGGCCATGAGGGCTTTCGTGAATAATGCCCTTCAGCTGAATTCAAAACACTATGGGATCTTGGGGGGTGTTTCTGGATAAAGCCCTTTGTGAAGAAAATACAAACACATGCATGGGATCCAGGCAGGAA-AAAAGCTTCCCTTAGAAAGTGGTTTGGTACCTGGAAGGAGCTCTCAGGGTTGGGCACTGGACC----CCTTGCTGGCTGCACTTTAGCCAGAGGCCTGAGCCTGATTGATCTTGCAGCGGGAGAGCCTCACTGGGGTCACAGGTTACCAAAATGCCTGTCATCTTCCAGATGAGCAAGCCCATCTGCGTGCTTGTCACTGTC-AACCCCATGAGGGG
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75871705 603 + 121039945 aattctgttgtgaactgcgcatgcaaggcatctaggtcaagcgctccctatgagaatctaatgcctggtgattgcaggtggaacagcttcatcccgtaactacccgccaccctcatccgtggaaaaattgttttccacgaaactgttccctggtgctgaaaagtttgagga-ccactgTTGTAGACGCAGGTCTGTGCCTATGAAAG-GCCGCAGCTTCTGGTGAATCCCATAATCAATGTCCTTTAATGAGAAGTGAAGACTTTGGTCATGAGAGCTTTCGTGAATACTGCCCTTCAGTTGAATTCAAAACACTATAAGCTCTTGGGGGGTGTTTCTGGATAAAGCCCTTTGTGAAGAAAATACAAACACATGCATGGGATCCAGGCAGGAA-AAAGGCTTCCCTTAGGAAATGGTTTGGTACCTGGAAGGAGCTCTCAGGGTTGGGCACTGGACC----CCTTGCTGGCTGCACTTCAGCCAGAGGCCTGAGCCTGATTGGTCTTGCAGCAGGAGAGCCTCACTGGGGTCACAGTTTACAAAAATGCCAGTCATCTTCCAGCTGAGCAAGCCCATCTGCGTGCTTGTGACTGTC-AACCCCATGAGGGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169247641 601 + 169600520 aattctagtgtgaactgtgcatgtgagggatctaggttgcacgctgtctatgggaatccagtgtctgatgactgcaggtggagcaggttcattccgtaactacctgcctccattatccatggaaaaattgtcatccacaaaatcattccctggtgccaaaaagattgggac-t-gctgGAGTAGAGGCAGGTCTGTGCAACTAAAAGGCCAGCAGCTTCTGGTGAATCCTATAATTAATGTCATTTAACGAGCAGTGGAGACTC--CTCGTGAGGGACTTCGTAAATAATGCCCTTCAGTTGGATTCAAAACACTATAAGCTCTTGGGGAGTGTTTCTGGATAAAGCACTTTGTGCAGAAAATGCAAACACATGCATGGGATCCAGGCAGGAACAACAGCTTCCTTTACAAAGTGGTTGGGCACCTGGAAGGAGCTCTCAGGGTTGGGCACTGTATC----CTTTGCTGGCTGCACTTTAGCCAGAGGCCTGAGTCTCATTGGTCTTGCAGCGGGAGAGCCTCCCTGGGGTCACAGGTTACAAAAGTACCTGTCATCCTCCAGCTGACCAAGCCCATC-GCGCGCTTGTCAGTGTC-AACCCCATGAGGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        39673 591 +    808388 -attctattgtgaactgcccatgcaaggaatctaggctgagcgctccctatgggaatctaatgcctgatgatcgcaggtggagcaggttcatcccgtaaccacccgccaccctcatccatggaaaaattgtcttccacgaaacggttccctgacgtcaaaaaggttgggga-c-ACTGGTATAGAGGCAGGTCTGTGCCTCGGAAA-GCCAGCAGCTTCTGGTGAATCCCATAAATAATGACCTTTAATGAGAAATGGAGACTTGGGTCAGGAGGGACTTCGTGAATAATTCCCTTCAGCTGGATTCTAAACATGATAAGCTCT---------TTTCTGGATAAAGCCCCTTGTGCAGAAAATGCAAACACATGCATGGGATCCAGGCAGGAA-AACAGCTTCCTTTACAAAGTGGTTGGGCACCTGGAAGGAGCTCTCAGGGTTGGGCACTGTATC----CTTTGCTGGCTGCACTTTAGCCAGAGGCCTGAGTCTCATTGGTCTTGCAGCGGGAGAGCCTCCCTGGGGTCACAGGTTACAAAAGTACCTGTCATCCTCCAGCTGAGCAAGCCCATC-GCGCGCTTGTCAGTGTC-AACCCCATGAGGGG
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       215725 602 -   3745747 aattctagtgtgaactatgcatgtgagggatctaggttgcacgctgtctatgggaatccaatgtctgatgactgcaggtggagcaggttcattccgtaactacctgcctccattatccatggaaaaattgtcatccacagaatcattccctggtgccaaaaaggttggggacc-actgGTGTAGAGGCAGATCTGTGCAACTAAAAGGCCAGCAGCTTCTGGTGAATCCTATAATTAATGTCATTTAACGAGCAGTGGAGACTC--CTCGTGAGGGACTTCGTAAATAATGCCCTTCAGTTGGATTCAAAACACTATAAGCTCTTGGGGAGTGTTTCTGGATAAAGCACTTTGTGCAGAAAATGCAAACACATGCATGGGATCCAGGCAGGAACAACAGCTTCCTTTACAAAGTGGTTGGGCACCTGGAAGGAGCTCTCAGGGTTGGGCACTGGACC----CTTTGCTGGCTGCACTTTAGCCAGAGGCCTGAGCCTCACCGGCCTTGCAGCGGGAGAGCCTCCCTGGGGTCACAGGTTACAAAAGTACCTGTCATCCTCCAGCTGAGCAAGCCCATC-GCGCGCTTGTCAGTGTC-AACCCCATGAGGGG
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       546367 597 +    767749 aattctagtgtgaactgtgcatgtgagggatctaggttgcacgctgtctgtgggaacccaaagtctgatgattgcaggtggagcaggttcattccgtaaccacctgcctccattatccacagaaaaactgtcatccacaaaatcattccctggtgccaaaaagattggcac-t-gctgGAGTAGAGGCAGGTCTGTGCAACTAAAAGGCCAGCAGCTTCTGGTGAATCCTATAATTAATGTCATTTAACGAGCACTGGAGACTC--GTCGTGAGGGACTTTGTAAATAATGCCCTTCAGTTGGATTTGAAACTCTATAATCTTGTGGGGA-TGTTTCTGGATAAAGCCCTTTATGCAGAAAATGCAGACAAATTAATGGGATCCAGACAGGAA-AAC--TTTCCCTTACAAAGTGGTTTGCCACCTGGCAGGAGCTCTCAGGGTTGGGCACTGTATC----CTTTGCTGGCTGCACTTTAGCCAGAGGCCTGAGTCTCACTGGCCTTGCAGCGGGAGAGCTTCCCTGGGGTCACAGGTTACAAAAGTACCTGTCATCCTCCAGCTGAGCAAGCCCATC-GCGCGCTTATCAGTGTC-AACCCCATGAGGGG
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                475006 601 -  84932903 aattctggtgtgaactgtgcatgtgagggatctaggctgcacgctgtctatgggaacccaatgtctgatgattgcaggtggagcaggttcattccgtaaccacctgccttcattatccatggaaaaattgtcatccacaaaatcattccctggtgccaaaaagattgggac-t-gctgGAGTAGAGGCAGGTCTGTGCAACTAAAAGGCCAGCAGCTTCTGGTGAATCCTATAATTAATGTCATTTAACGAGCAGTGGAGACTC--GTCATGAGGGACTTCGTAAATAATGCCCTTCAGTTGGATTCAAAACACTATAAGCTCTTGGGGAGTCTTTCTGGATAAAGCACTTTGTGCAGAAAATGCAAACACACGCATGGGATCCAGGCAGGAACAAAAGATTCCTTTACAAAGTGGTTGGGCACCTGGAAGGAGCTCTCAGGGTTGGGCACTGTATC----CTTTGCTGGCTGCACTTTAGCCAGAGGCCTGAGTCTCATTGGCCTTGCAGTGGGAGAGCCTCACAGGGGTCACAGGTTACAAAAGTACCTGTCATCCTCCAGCTGAGCAAGCCCATC-GCGCGCTTGTCAGTGTC-AACCCCATGAGGGG
i chlSab2.chr24             C 0 I 3367
s manLeu1.NW_012110885v1       227255 601 +    420018 aattctagtgtgaactgtgcatgtgagggatctaggttgcacgctgtctgtgggaacccaaagtctgatgattgcaggtggagcaggttcattccgtaaccacctgcctccattatccacggaaaaactgtcatccacaaaatcattccctggtgccaaaaagattggcac-t-gctgGAGTAGAGGCAGGTCTGTGCAACTAAAAGGCCAGCAGCTTCTGGTGAATCCTATAATTAATGTCATTTAACGAGCACTGGAGACTC--GTCGTGAGGGACTTTGTAAATAATGCCCTTCAGTTGGATTCAAAACACTATAAGCTCTTGGGGAGTGTTTCTGGATAAAGCACTTTGTGCAGAAAATGCAAACACATGCGTGGGATCCAGGCAGGAACAAAAGATTCCTTTACAAAGTGGTTTGGCACCTGGAAGGAGCTCTCAGGGTTGGGCACTGTATC----CTTTGCTGGCTGCACTTTAGCCAGAGGCCTGAGTCTCACTGGCCTTGCAGCGGGAGAGCTTCCCTGGGGTCACAGGTTACAAAAGTACCTGTCATCCTCCAGCTGAGCAAGCCCATC-GCGCGCTTATCAGTGTC-AACCCCATGAGGGG
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                209132 601 - 132174527 tattctattgtgaagtgcgcatgcaagggagctaggctgagcgtttcctaccagaa---ggtgcctggtgaatgcaggtggaacaggttcaccccgtaaccacccaccaccatcatccatggagaaagtgtcttccctgagactgttccctggtgccaaaaatgttaggga-ccAATGGTGTAGAGGCAGGTCTGTGCAACTGAAAGGCCAGCAGCTTCTAGTGAATTCCATAATTAATGTCATTTAATGAGCAGTGGAGACTCTGGCCATGAGAGGCTTCGGGAATAATTCCCTTCAGTTGGATTCCAAACACTGTAAGCTCTTGGAG--TGTTCCTGGATAAAGCCTTTTGTGCAGAAGATGCAAACACATGCATCGGATCCAGGCAGGAA-CAAAGC--CCCTTACAAAGTGGTTTGGCACCTGGAAGGAGCCCTCAGGGTTGGGCACTGGACCCCTTCCTTGCTGGCTGCACTTCAGCCAGAGGCCTCAGCCTGATGGGTCCTGCAGTGGGAGAGCCTCAATGGGGTCACAGGTTACAAAAACACCTGTCATCCTCCAGCTGAGCAAGCCCATCTGCCTGCTTGTCAGTGTC-AGCCCCATGAGGGG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              17249 602 +    130757 tattctattgtgaactgcgcatgcaagagatctaggttgagtgctccctatgagaatttaatgcctcatgaatgtagatgcaacaggtttatcccgtaaccacccaccatcatcatccatggaaaaattgtcttccgtgaaactgttctctggtgccaaaaatgttaggga-ccAATGGGGTAGAGGCAGGTCTGTGCAACTGAAATGCCAGCAGCTTCTAGTGAATCCCATAATTAATGTCATTTAATGAGCAGTGGAGACTTTTGTCATGAGAGGCTTTTGGAATAATTCCTTTCAGCTGGATTCCAAACACTATAAGCTCTTGGGG--TGTTTCTAGGTAAAGCCCTTTGTGCAGAAAATGCAAACATATGCATGGGATGCAGGCAGTAA-CAAAGCTTCCCTTACAAAGTGGTTTGGCACCTGGAATGAGCCCTCAGGTTTGGGCACTGGATC----CCTTGCTGGCTGCACTTCAGCCAGAGGCCTCAGCCTGATTGGTCTTGCAGTAGGAGCGCCTCAATGGTGTCACGGGTTACAAAAATGCCTGTCATCCTCCAGCTGAGCAAGCCCATCTGCCTGCTTGTCAGTGTC-AACCTCACGATGGG
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836   0 -   6934359 C

a score=1542105.000000
s hg38.chr15_KI270851v1_alt      6959 309 +    263054 TGCACTCTGGAAGATGACAAGATGCACACAAACCTCCTCCCCCCACTTATCCACTACCACACAATCGAAACCAATTTATATTCCAGAAAGGGACAGGTGCCTGCAGGGATAAACAGAATGGAAGTATTATCTTACCTGGGAAAGACACTGCCAAATACCACATGTTTCAGGAAGATCAACTCATAAGTGTTCAGGAAGTGACTGAAGGGCAACGGTGGGTGAAGTGACGTGGCAGCCTCAGGGCTGGATGTGaggagggctccct-cccc-catgcaggctttgcctccaggagctgcaccaggaactcac
s panTro5.chr14                548997 307 -  91965084 TGCACTCTGGAAGATGACAAGATGCACACAAACCTCCTCCCACTGATTATCCACTACCACACACTCAACTGCAACCCGTGCTCCAGAAAGGGACAGGGGCCTGCAGGGATAAACAGAATGGACGTATTTTCTTAACTGGGAAAGACACTGCCAAATGCCACATGTTTCAGGAAGGTTAACTCATAAGTGTTCAGGAAGTGACTGAAGGGCAGTGGCGGGTGAGGTGACGGGACAGCCTCAGGGCTGCACATGAGGAGGGCTCCCT-CCCCACA---AGCCTTTCCCTCCAGGAGCTGCACCAGGAACTCGT
i panTro5.chr14             C 0 C 0
s panPan2.chr14                250101 307 - 107357366 TGCACTCTGGAAGATGACAAGATGCACACAAACCTCCTCCCACTGATTATCCACTACCACACACTCAACTGCAACCCGTGCTCCAGAAAGGGACAGGGGCCTGCAGGGATAAACAGAATGGATGTATTTTCTTAACTGGGAAAGACACTGCCAAATGCCACATGTTTCAGGAAGGTTAACTCATAAGTGTTCAGGAAGTGACTGAAGGGCAGTGGCGGGTGAGGTGACGGGACAGCCTCAGGGCTGCACATGAGGAGGGCTCCCT-CCCCACA---AGCCTTTCCCTCCAGGAGCTGCACCAGGAACTCGT
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        14133 308 -     16452 TGCACTCTGGAAGATGACAAGATGCACACAAACCTCCTCCCCCCACTTATCCACTAGCACACAGTCGAAACCAATTTATATTCCAGAAAGGGACAGGCGCCTGCAGGGATAAACAGAACGGCAGTATTATCTTACCTGGGAAAGACACTGCCATATACCACATGTTTCAGGAAGATTAACTCATAAGCGTTCAGGAAGTGACTGAAGGGCAACGGTGGGTGAAGTGACGTGACAGCCTCAGGGCTGCATGTGAGGAGGGCTCCCT-CCCCATG--CAGGCTTTTCCTCCAGGAGCTGCACCAGGAACTCAC
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75872308 309 + 121039945 TGACATCTGGAAGATGACAAGATGCACACAAACCTCCTCCCCCCACTTATCCACAACCACACACTCAACTGCAACCTGTGCTCCAGAAAGGGGCAGGTGCCTACAGAGATAAACAGAACGGAAGTATTATCTTACCTGGGAAAGACACTGCCAAATACCACATGTTTCAGGAAGATTAACTCATAAGTGTTCAGGAAGTGACTGAAGGGCAACGGTGGGTGAAGTGACGTGACAGCCCCAGGGCTGCACGTGAGGAGGGCTCCCT-CCCC-CACGCAGGCTTTTCCTCCAGGAGCTGCACCAGGAACTCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169248242 308 + 169600520 CGCACTCGGGAAGGCGACAAGATGCTCACAAACCTCCTCCCACCAGTTATCCACCACCACACACTCAACGGCAGCCCGTGCTCCAGAAAGGGACAGGGACCTGCAGGAATAAACAGAACGGAAGTATTTTCTTACCTGGGAAAGACACTGCCAAATACCACATGTTTCAGGAAGGTTAACTCATAACTGTTCAGGAAGTGACTGAAGGACACTGGTGGGTGAGGTGACGGGACAGCCTCACGGCTGCACATGAGGAGGGTTCCCT-CCCCATG--CAAGCTTATTCTCCAGGAGCTGCACCAGGAACTCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        40264 308 +    808388 CGCACTCGGGAAGGCGACAAGATGCTCACAAACCTCCTCCCACCAGTTATCCACCACCACACACTCAACGGCAGCCCGTGCTCCAGGAAGGGACAGGGGCCTGCAGGGATAAACAGAACGGAAGTATTTTCTTACCTGGGAAAGACACTGCCAAATACCCCATGTTTCAGGAAGATTAACTCATAAGTGTTCAGGAAGTGACTGAAGGACAGTGGTGGGTGAGGTGACGGGACAGCCTCTGGGCTGCACATGAGGAGGGTTCCCT-CCCCACG--CAAGCTTATTCTCCAGGAGCTGCACCAGGAACTCAT
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       216327 309 -   3745747 CGCACTCGGGAAGGCGACAAGATGCTCACAAACCTCCTCCCACCAGTTATCCACCACCACACACTCAACGGCAGCCCGTGCTCCAGAAAGGGACAGGGACCTGCAGAAATAAACAGAACGGAAGTATTTTCTTACCTGGGAAAGACACTGCCAAATACCACAAGTTTCTGGAAGGTTAACTCATAAGTATTCAGGAAGTGACTGAAGGGCAATGGTGAGTGAGGTGACGTGACAGCCTCAGGACTGCACATGAGGAGGGCTCCGTCCCCCATG--CAGGCTTTTCCTCCAGGAGCTGCACCAGGAACTCAT
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       546964 308 +    767749 CACACTCGGGAAGGTGACAAGATGCTCACAAACCTCCCCCCATTAATTATCCACCACCACACACTCAACTGCAACCCGTGCTCCAGAAAGGGACAGGGGCCTGCAGGGATAAACAGAACGGAAGTATTTCCTTACCTGGGAAAGACACTGCCAAATACCCCATGTTTCAGGAAGGTTAACTCAAAATTGTTCAGGAAGTGACTGAAGGACAGTGGTGGGTGAGGTGACGGGACATCCTCAGGGCTGCACATGAGGAGGGTTCCCT-CCCCACG--CAAGCTTATTCTCCAGGAGCTGCACCAGGAACTCAT
i cerAty1.NW_012003680v1    C 0 C 0
s manLeu1.NW_012110885v1       227856 308 +    420018 CACACTCGGGAAGGTGACAAGATGCTCACAAACCTCCCCCCATTAATTATCCACCACCACACACTCAACTGCAACCCGTGCTCCAGAAAGGGACAGGGGCCTGCAGGGATAAACAGAACGGAAGTATTTCCTTACCTGGGAAAGACACTGCCAAATACCCCATGTTTCAGGAAGGTTAACTCATAATTGTTCAGGAAGTGACTGAAGGACAGTGGTGGGTGAGGTGACGGGACATCCTCAGGGCTGCACATGAGGAGGGTTCCCT-CCCCACG--CAAGCTTTTCCTCCAGGAGCTGCACCAGGAACTCAT
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                209733 302 - 132174527 TGCACTCTGGAAGATGATAAGACGCACACAAA---CCTCCCACTGGTTATCCACTATCACACACTCAATCACAACCTGTGCTCCAGAAAGGGACAGGCGCCTGCAGG--TAAATAGAACGTAAGTGTTATCTTACCTGGAAAAGACACTGCCAAATAC--CATGTTTCAGGAAGATTAACTCATAAATATTCATGAAGTGACTGAAGTGCAGTGGTGGGTGAGGTGACGTGACAGCCTCCGGGCTGCACCTGAGGAGGGCTCCCTCCCCCATG--CAGGCTTTTCCTCCAGGACCTGCACCAGGAACTCCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              17851 309 +    130757 TGCACTCTGGAAGATGGCAAGATGCACACAAACCTCCTCCCACTAATTATACACTACTACACACTCAACTGCAACCTGTGCTCTAGAAAGGGACAGGCGCCTGCAGGGATAAACAGAATGTAAATATTGTCTTACCTGGGAAAGACACTGCCAAATATCACATGTTTCAGGAAGGTTAACTCATAAATATTCAGGAGGTGACTGAAGGGGAATGGTGAGTGAGGTGACGTGACAGCCTCAGGGCCGCACCTGAGGAGGGCTCCCTCCCCCATG--CAGACTTTTCCTCCAGGACCCGCACCAGGAACTCAT
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836   0 -   6934359 C
e chlSab2.chr24                475607 3367 -  84932903 I

a score=141332.000000
s hg38.chr15_KI270851v1_alt      7268 24 +    263054 agaggatCAGGAATTATTCTGAGA
s panTro5.chr14                549304 24 -  91965084 AGAGGATCAGGAAGGATTCTGAGA
i panTro5.chr14             C 0 C 0
s panPan2.chr14                250408 24 - 107357366 AGAGGATCAGGAAGGATTCTGAGA
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        14441 24 -     16452 AGAGGATCAGGAATTATTCTGAGA
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75872617 24 + 121039945 AGAGGATCAGGAATTATTCTGAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169248550 24 + 169600520 AGAGGATCAGGAAGGATTCTGAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        40572 24 +    808388 AGAGGATCAGGAAGGATTCTGAGA
i macFas5.chrUn_KE145882    C 0 C 0
s macNem1.NW_012011211v1       216636 24 -   3745747 AGAGGATCAGGAAGGATTCTGAGA
i macNem1.NW_012011211v1    C 0 I 66
s cerAty1.NW_012003680v1       547272 24 +    767749 AGAGGATCAGGAAGGATTCTGAGA
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                478974 24 -  84932903 AGAGGATCAGGAAGGATTCTGAGA
i chlSab2.chr24             I 3367 C 0
s manLeu1.NW_012110885v1       228164 24 +    420018 AGAGGATCAGGAAGGATTCTGAGA
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                210035 23 - 132174527 ACAGGATCACCAAGTACTCT-AGA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              18160 24 +    130757 ACAGGATCATGAAGTACTCTGAGA
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836  0 -   6934359 C

a score=276339.000000
s hg38.chr15_KI270851v1_alt      7292 67 +    263054 ACATACTTCTG-AGTGCTGCCTACAGGGAGAAAATAAATTATA-AAAAATAAATCAATTCTAAACAAAA
s panTro5.chr14                549328 68 -  91965084 ACATTCTTCTGTGGTGCTGCCTAGAGGGGGAaaataaattata-aaaaataaatcaattctaaataaaC
i panTro5.chr14             C 0 C 0
s panPan2.chr14                250432 68 - 107357366 ACATTCTTCTGTGGTGCTGCCTAGAGGGGGAaaataaattata-aaaaataaatcaattctaaataaaC
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        14465 67 -     16452 ACATACTTCTG-AGTGCTGCCTAGAGGAAGAAAATAAATTATA-AAAAATAAATCAATTCTAAACAAAA
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75872641 68 + 121039945 ACATACTTCTGAGGTGCCGCCTAGAGGGGGAAAATAAATTATA-AAAAATAAATCAATTCTAAACAAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169248574 61 + 169600520 ACATTCTTCTGTGGTGCTGCCTAGAGGGGGAAAA-----TACA-AGAAA--AATCAGTTCTAAACAAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        40596 68 +    808388 ACATTCTTCTGTGGTGCTGCCTAAAGGGGGAACATAAATTATA-AAAAAGTAATCAATTCTAAACAAAG
i macFas5.chrUn_KE145882    C 0 C 0
s cerAty1.NW_012003680v1       547296 61 +    767749 ACATTCTTCTGTGGTGCTGCCTAGAGGGGTAAAA-----TACA-AAAAA--AATCAGTTCTAAACAAAG
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                478998 62 -  84932903 ACATTCTTCTGTGGTGCTGCCTAGAGGGGGAAAA-----CACACAAAAA--AATCAGTTCTAAACAAAG
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       228188 61 +    420018 ACATTCTTCTGTGGTGCTGCCTAGAGGGGTAAAA-----TACA-AAAAA--AATCAGTTCTAAACAAAG
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                210058 68 - 132174527 ACATTCTTCTGTGGTGCTGCCTGAAGGGGGAAGATAAATTACA-CAAAGGCAGTCAATTCTAAACGAAG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              18184 68 +    130757 ACATTATTCTGTGATGCTACCTAAAGGGAGAAGATAAATTACA-CAAAAGCAATCAATTCTAAACAAAA
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836  0 -   6934359 C
e macNem1.NW_012011211v1       216660 66 -   3745747 I

a score=93757.000000
s hg38.chr15_KI270851v1_alt      7359 17 +    263054 TATGACATTTGTTATTA
s panTro5.chr14                549396 17 -  91965084 TATGACATTTGTTATTA
i panTro5.chr14             C 0 C 0
s panPan2.chr14                250500 17 - 107357366 TATGACATTTGTTATTA
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        14532 17 -     16452 TATGACATTTGTTATTA
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75872709 16 + 121039945 TATGACATTTGTTA-TA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169248635 17 + 169600520 TATGACACTTGTTATTA
i rheMac8.chr7              C 0 C 0
s macFas5.chrUn_KE145882        40664 17 +    808388 TATCTCATTTGTTATCA
i macFas5.chrUn_KE145882    C 0 N 0
s macNem1.NW_012011211v1       216726 17 -   3745747 TATGGCATTTGTTAATA
i macNem1.NW_012011211v1    I 66 C 0
s cerAty1.NW_012003680v1       547357 17 +    767749 TATGACACTTGTTATTA
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                479060 17 -  84932903 TATGACACTTGTTATTA
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       228249 17 +    420018 TATGACACTTGTTATTA
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                210126 17 - 132174527 TATGGCATTTGTTAATG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              18252 17 +    130757 TATGGCATTTGTTAATG
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836  0 -   6934359 C

a score=120716.000000
s hg38.chr15_KI270851v1_alt      7376 24 +    263054 GAAACTATTTCTGGAACCTGTGGG
s panTro5.chr14                549413 24 -  91965084 GAAACTATTTCTGGAACCTGTGGG
i panTro5.chr14             C 0 C 0
s panPan2.chr14                250517 24 - 107357366 GAAACTATTTCTGGAACCTGTGGG
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        14549 24 -     16452 GAAACTATTTCTGGAACATGTGGG
i gorGor5.CYUI01007821v1    C 0 I 294
s nomLeu3.chr6               75872725 24 + 121039945 GAAACTATTTCTGGTACCTGTGGG
i nomLeu3.chr6              C 0 I 293
s rheMac8.chr7              169248652 24 + 169600520 GAAACTATATCTGAAACCTGTGGG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011211v1       216743 24 -   3745747 TAAACTCTTTCTGAAACCTGTGGG
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       547374 24 +    767749 GAAACTATATCTGAAACCTGTGGG
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                479077 24 -  84932903 GAAACTGTATCTGAAACCTGTGGG
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       228266 24 +    420018 GAAACTATATCTGAAACCTGTGGG
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                210143 24 - 132174527 GAGACCGTTTCTGTAGCCTGTGGG
i calJac3.chr10             C 0 I 293
s saiBol1.JH378376              18269 24 +    130757 GAGACTATTTCTGAAACCTGTGGG
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836  0 -   6934359 C

a score=6006.000000
s hg38.chr15_KI270851v1_alt      7400 1 +    263054 A
s panTro5.chr14                549437 1 -  91965084 A
i panTro5.chr14             C 0 C 0
s panPan2.chr14                250541 1 - 107357366 A
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        14867 1 -     16452 A
i gorGor5.CYUI01007821v1    I 294 C 0
s nomLeu3.chr6               75873042 1 + 121039945 A
i nomLeu3.chr6              I 293 C 0
s rheMac8.chr7              169248676 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011211v1       216767 1 -   3745747 A
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       547398 1 +    767749 A
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                479101 1 -  84932903 A
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       228290 1 +    420018 A
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                210460 1 - 132174527 A
i calJac3.chr10             I 293 C 0
s saiBol1.JH378376              18293 1 +    130757 A
i saiBol1.JH378376          C 0 I 293
e colAng1.NW_012115910v1      6764836 0 -   6934359 C

a score=6006.000000
s hg38.chr15_KI270851v1_alt      7401 1 +    263054 A
s panTro5.chr14                549438 1 -  91965084 A
i panTro5.chr14             C 0 I 300
s panPan2.chr14                250542 1 - 107357366 A
i panPan2.chr14             C 0 I 300
s gorGor5.CYUI01007821v1        14868 1 -     16452 A
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75873043 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169248677 1 + 169600520 A
i rheMac8.chr7              C 0 I 298
s macNem1.NW_012011211v1       216768 1 -   3745747 A
i macNem1.NW_012011211v1    C 0 I 304
s cerAty1.NW_012003680v1       547399 1 +    767749 A
i cerAty1.NW_012003680v1    C 0 I 305
s chlSab2.chr24                479102 1 -  84932903 A
i chlSab2.chr24             C 0 I 310
s manLeu1.NW_012110885v1       228291 1 +    420018 A
i manLeu1.NW_012110885v1    C 0 I 305
s calJac3.chr10                210461 1 - 132174527 A
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              18587 1 +    130757 A
i saiBol1.JH378376          I 293 C 0
e colAng1.NW_012115910v1      6764836 0 -   6934359 C

a score=1144.000000
s hg38.chr15_KI270851v1_alt      7402 3 +    263054 ACA
s gorGor5.CYUI01007821v1        14869 3 -     16452 ACA
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75873044 3 + 121039945 ACA
i nomLeu3.chr6              C 0 C 0
s calJac3.chr10                210462 3 - 132174527 ACC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              18588 3 +    130757 AAA
i saiBol1.JH378376          C 0 C 0
e panPan2.chr14                250543 300 - 107357366 I
e panTro5.chr14                549439 300 -  91965084 I
e colAng1.NW_012115910v1      6764836 0 -   6934359 C
e manLeu1.NW_012110885v1       228292 305 +    420018 I
e cerAty1.NW_012003680v1       547400 305 +    767749 I
e macNem1.NW_012011211v1       216769 304 -   3745747 I
e rheMac8.chr7              169248678 298 + 169600520 I
e chlSab2.chr24                479103 310 -  84932903 I

a score=5922.000000
s hg38.chr15_KI270851v1_alt      7405 3 +    263054 AAC
s panTro5.chr14                549739 3 -  91965084 AAC
i panTro5.chr14             I 300 C 0
s panPan2.chr14                250843 3 - 107357366 AAC
i panPan2.chr14             I 300 C 0
s gorGor5.CYUI01007821v1        14872 3 -     16452 AAC
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75873047 3 + 121039945 AAC
i nomLeu3.chr6              C 0 C 0
s calJac3.chr10                210465 3 - 132174527 AAC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              18591 3 +    130757 AAC
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836 0 -   6934359 C
e manLeu1.NW_012110885v1       228292 305 +    420018 I
e cerAty1.NW_012003680v1       547400 305 +    767749 I
e macNem1.NW_012011211v1       216769 304 -   3745747 I
e rheMac8.chr7              169248678 298 + 169600520 I
e chlSab2.chr24                479103 310 -  84932903 I

a score=21326.000000
s hg38.chr15_KI270851v1_alt      7408 6 +    263054 CAACCC
s panTro5.chr14                549742 6 -  91965084 CAACCC
i panTro5.chr14             C 0 C 0
s panPan2.chr14                250846 6 - 107357366 CAACCC
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        14875 6 -     16452 CAACCC
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75873050 6 + 121039945 TAACCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169248976 6 + 169600520 CAACCA
i rheMac8.chr7              I 298 C 0
s macNem1.NW_012011211v1       217073 6 -   3745747 CAACCA
i macNem1.NW_012011211v1    I 304 C 0
s cerAty1.NW_012003680v1       547705 6 +    767749 CAACCA
i cerAty1.NW_012003680v1    I 305 C 0
s manLeu1.NW_012110885v1       228597 6 +    420018 CAACCA
i manLeu1.NW_012110885v1    I 305 C 0
s calJac3.chr10                210468 6 - 132174527 AAACTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378376              18594 6 +    130757 CAACCC
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836 0 -   6934359 C
e chlSab2.chr24                479103 310 -  84932903 I

a score=427817.000000
s hg38.chr15_KI270851v1_alt      7414 92 +    263054 TGTGGCTGACAGCAACCACCGGCAGCCACCATCCCCTCCACAGCCCTGTGTTTGGAACATCACCTGAGTGATTGTATAAGGAACTTTCTTTC
s panTro5.chr14                549748 90 -  91965084 TGTGGCTGACAGCAACCACCGGCTGCCACCATCCCCTCCACAGCC-TGTGTT-GGAACATCACCTGAGAGATTGTATTAGCAACTTTCCTTC
i panTro5.chr14             C 0 C 0
s panPan2.chr14                250852 90 - 107357366 TGTGGCTGACAGCAACCACCGGCTGCCACCATCCCCTCCACAGCC-TGTGTT-GGAACATCACCTGAGAGATTGTATTAGCAACTTTCCTTC
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        14881 91 -     16452 TGTGGCTGACAGCAACCACCAGCAGCCACCATCCCCTCCACAGCCCTGTGTT-GGAACATCACCTGAGTGATTTTATTAGGAACTTTCTTTC
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75873056 91 + 121039945 TGTGGCTGACGGCAACCACCGGCGGCCACCATCCCCTCCACAGCCCTGCGAT-GGAACATCACCTGAGTGATTGTATTAGGAACTTTCTTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169248982 91 + 169600520 TGTGACTGACAGCAACCACCGGCGGCCACCATCCCCTCCACAGCCCTGTGTC-AGATCATCACCTGAGAGATTGTATTTGCAACTTTCTTTC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011211v1       217079 91 -   3745747 TGTGACTGACAGCAACCACCGGCGGCCACCATCCCCTCCACAGCCCTGTGTC-AGATCATCACCTGAGAGATTGTATTTGCAACTTTCTTTC
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       547711 91 +    767749 TGTGACTGACAGCAACCACCGGCGGCCACCATCCCCTCCACAGCCCTGTGTC-AGATCATCACCTGAGAGATTGTATTTGCAACTTTCTTTC
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                479413 91 -  84932903 TGTGACTGACAGCAACCACCGGCGGCCACCATCCCCTCCACAGCCCTGTGTC-AGATCATCACCTGAGAGATTGAATTTGCAACTTTCTTTC
i chlSab2.chr24             I 310 C 0
s manLeu1.NW_012110885v1       228603 91 +    420018 TGTGACTGACAGCAACCACCGGCGGCCACCATCCCCTCCACAGCCCTGTGTC-AGATCATCACCTGAGAGATTGTATTTGCAACTTTCTTTC
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                210474 83 - 132174527 TGGGGGTGAGAGCGGCCACCGGCAGCCAGCATCCCCTCCACAGCCCTGTGTC-GGATCATCAGCTGA--------GTTAGCAACTTTCTTTC
i calJac3.chr10             C 0 I 1759
s saiBol1.JH378376              18600 89 +    130757 CGTGGATTCTTGTGACCATTGGCAGCCACCATCCCCTCCACAGCCC--TGTC-GGGACATCAAGTGAGTAATTGTGTTAGCAACTTTCTGTG
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836  0 -   6934359 C

a score=1212783.000000
s hg38.chr15_KI270851v1_alt      7506 280 +    263054 AGAATCATCTTAAAAACTTATGTGTCCCATTTCACATGGAGAGGTCATCTATCCA-TTTTGTCTTCATAGAGAAATAGAAGGAGGTGAATACCAAATACACTTCATATCTCCGGATTATTCAAATCTAATTGCCCCTTTATCACCTTCTGATTTCTGGTCTACACAGAACAATCTGCAAATTTT-----TCTCACTGGTGTTATACTAAAACTTGTGAA-GGGCCAGATACTGGAATAATTTCAACTTACATTATTATTCTAATAATTCTAAGAATTTAGAATTAAG
s panTro5.chr14                549838 276 -  91965084 GGAATCATATTAAAAACTT-TGTGTCCCATTTCACATG---ATGTCATTTTTCCA-TTTCATCTTCACAGAGAAATAGAAGGAGAAGAATACCAAATACACTTCCTATCTCCAGATTATTCAAATATAATTGTCCCTTTATCAACTTCTGATTTCTGGTCTTCACAGAATACTCTACGAATTTT-----TCTCACTGGTGTTATACCAAAAGTTGTGAA-GCGCCAGATACTGGGATTAATTTAACCAACATTATTATTCTAATAGTTCTTAGAATTTAGAATTACA
i panTro5.chr14             C 0 C 0
s panPan2.chr14                250942 276 - 107357366 GGAATCATATTAAAAACTT-TGTGTCCCATTTCACATG---ATGTCATTTTTCCG-TTTCATCTTCACAGAGAAATAGAAGGAGAAGAATACCAAATACACTTCCTATCTCCAGATTATTCAAATATAATTGTCCCTTTGTCAACTTCTGATTTCTGGTCTTCACAGAATACTCTACGAATTTT-----TCTCACTGGTGTTATACCAAAAGTTGTGAA-GCGCCAGATACTGGGATTAATTTAACCAACATTATTATTCTAATAGTTCTTAGAATTTAGAATTACA
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        14972 279 -     16452 AGAATCATCTTAAAAACTTATGTGTCCCATTTCACATGGAGAGGTCATCTATCCA-TTTTGTCTTCATAGAGAAATAGAAGGAGGTGAATACCAAATACACTTCATATCTCCAGATTATTCAAATCTAATTG-CCCTTTATCACCTTCGGATTTCTGGTCTACACAGAACAATCTGCAAATTTT-----TCTCACTGGTGTTATACTAAAACTTGTGAA-GGGCCAGATACTGGAATAATTTCAACTTACATTATTATTCTAATAATTCTAAGAATTTAGAATTAAG
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75873147 275 + 121039945 AGAATCATCTTAAAAAGTA-TGTGTCCCATTTCACACGGAGAGGTCATCTATCCA-TTTTGTCTTCATAGAGAAAT---AGGAGGTGAAAACC-AATACACTTCACATCTCCGGATTATTCAAATCTAATTGCCCTTTTATCACCTTCTGACTTCTGGTCTACACAGAACAATCTGCAAATTTT-----TCTCACTGGTGTTATACTAAAACTCGTGAA-GGGCCAGATACTGGAATAATTTCAACTTACATTATTATTCTTAAAATTCTAAGAATTTAGAATTATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169249073 279 + 169600520 ATAAGTATCTTAAAACCAT-TTTGTCCAATTTCACAAGGAGATGTCATCTATCCA-TTTTCTCTTCCTAGAG-AACAAAAGGAGATGAATATCATATACACTTCATCTCTCTGGATTATTCAAATCTAATTGTTCCTTTATCACCTTCTGATTTCTGGTCTACACAGAACACTCTACAAATTTT-----TCTCACCGGTGTTATACCAAAACTGACACATATTCAAGATACTGGAATAATTTCAAGCTACATTATTATTCTAATAATTCCAAGAATTTAGAATTACA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011211v1       217170 279 -   3745747 ATAAGTATCTTAAAACCAT-TTTGTCCAATTTCACAAGGAGATGTCATCTATCCA-TTTTCTCTTCCTAGAG-AACAAAAGGAGATGAATACCATATACACTTCATCTATCTGGATTATTCAAATCTAATTGTTCCTTTATCACCTTCTGATTTCTGGTCTACACAGAACACTCTACAAATTGT-----TCTCACTAGTGTTATACCAAAACTGATATATATTCCAGATGCTGAAATAATTTCAACTTACATTATTATTCTAATAATTCCAAGAATTTAGAATTACA
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       547802 279 +    767749 ACAAGCATCTTAAAACCGT-TGCATTCGATTTCACAAGGAGATGTCATCTATCCA-TTTCCTCTTCCTAGAG-AGCAAAAGGAGATGAATACCATATACACTTCATCTCTCTGGATTATTCAAATCTAATTGTCCCTTTATCACCTTCTGATTTCTGGTCTACACAGAACACTCTACAAATTGT-----TCTCACTAGTGTTATACCAAAACTGATACATATTCAAGATACTGGAATAATTTCAAGCTACATTATTACTCTAATAATTCCAAGAATTTAGAATTACA
i cerAty1.NW_012003680v1    C 0 I 299
s chlSab2.chr24                479504 279 -  84932903 ACAAGCATCTTAAAACCCT-TTTGTCCAATTTCACATGGAGATGTAATCTATCCA-TTTTCTCTTCCTAGAG-AACAAAAGGAGATGAATACCAAATACACTTCATCTCTCTGGATTATTCAAATCTAATTGTCTCTTTATCACCTTCTGATTTCTGGTCTACACAGAACACTCTACAAATTTT-----TCTCACCGGTGTTATACCAAAACTGATACATAGTCAAGATACTGGAATAATTTCAAGCTACATTATTATTCTAATAATTCCAAGAATTTAGAATTACA
i chlSab2.chr24             C 0 I 306
s manLeu1.NW_012110885v1       228694 279 +    420018 ACAAGCATCTTAAAACCGT-TGCATCCGATTTCACAAGGAGATGTCATCTATCCA-TTTCCTCTTCCTAGAG-AGCAAAAGGAGATGAATACCATATACACTTCATCTCTCTGGATTATTCAAATCTAATTGTTCCTTTATCACCTTCTGATTTCTGGTCTACACAGAACACTCTACAAATTTT-----TCTCACTGGTGTTATACCAAAACTGATACATATTCAAGATACTGGAATAATTTCAAGCTACATTATTACTCTAATAATTCCAAGAATTTAGAATTACA
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                212316 284 - 132174527 ATAATCATCTTAAAATCTT-TGTGTCCCATTTCACATGGAGATATCGTCTATATG-TTTTCCCTTCGTAGATAAATAGAAGGAGATGGATACCAAATACACTTCATATCTCCAGATTATTCAAATAT-AATGTGACTCTATCACCTTTTGATTTCTGGTCTACACAGAACACTCTACAATGTTTCAGCATAACATTTCAGTTATACAGAAACTGATATGTATTCCAGATACTGAAATAATCTCAACCTACATTATTATTCTAATAATTCTAAGAATTTAGAATTGAA
i calJac3.chr10             I 1759 C 0
s saiBol1.JH378376              18689 281 +    130757 AGAATCATCTTAAAAATGC-TGTGTCCCATTTCACATGAAGATGTCATCCATCCATTTTTCTCTTCATTGAAAAATAGAAGGAGATGAATACCAAATACACATCATATCTCCAGATTATTCAAATATAAATGTTGCTTTATCATCTTCGTATTTTTGGTCCACACAGAACATTCCACAATTTTT-----TCTCACTGGTGTTATACCAAAACTGTTATATATTCCAGATACTGAAATAATTTTAACCTACATTATTATTCTAATAATTCTAAGAATTTAGAATTACA
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836   0 -   6934359 C

a score=4664.000000
s hg38.chr15_KI270851v1_alt      7786 1 +    263054 A
s panTro5.chr14                550114 1 -  91965084 A
i panTro5.chr14             C 0 C 0
s panPan2.chr14                251218 1 - 107357366 A
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        15251 1 -     16452 A
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75873422 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169249352 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011211v1       217449 1 -   3745747 A
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       548380 1 +    767749 A
i cerAty1.NW_012003680v1    I 299 C 0
s chlSab2.chr24                480089 1 -  84932903 A
i chlSab2.chr24             I 306 C 0
s manLeu1.NW_012110885v1       228973 1 +    420018 A
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                212600 1 - 132174527 G
i calJac3.chr10             C 0 I 325
s saiBol1.JH378376              18970 1 +    130757 A
i saiBol1.JH378376          C 0 C 0
e colAng1.NW_012115910v1      6764836 0 -   6934359 C

a score=30624.000000
s hg38.chr15_KI270851v1_alt      7787 5 +    263054 TTATC
s panTro5.chr14                550115 5 -  91965084 TTATC
i panTro5.chr14             C 0 C 0
s panPan2.chr14                251219 5 - 107357366 TTATC
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        15252 5 -     16452 TTATC
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75873423 5 + 121039945 TTATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169249353 5 + 169600520 TTATC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011211v1       217450 5 -   3745747 TTATC
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       548381 5 +    767749 TTATC
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                480090 5 -  84932903 TTATC
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       228974 5 +    420018 TTATC
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                212926 5 - 132174527 TTATC
i calJac3.chr10             I 325 C 0
s saiBol1.JH378376              18971 5 +    130757 TTATC
i saiBol1.JH378376          C 0 N 0
e colAng1.NW_012115910v1      6764836 0 -   6934359 C

a score=34715.000000
s hg38.chr15_KI270851v1_alt      7792 7 +    263054 CTCTTTT
s panTro5.chr14                550120 7 -  91965084 CTCTTTT
i panTro5.chr14             C 0 C 0
s panPan2.chr14                251224 7 - 107357366 CTCTTTT
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        15257 7 -     16452 CTCTTTT
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75873428 7 + 121039945 CTCTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169249358 7 + 169600520 CTCtttt
i rheMac8.chr7              C 0 I 304
s macNem1.NW_012011211v1       217455 7 -   3745747 CTCtttt
i macNem1.NW_012011211v1    C 0 I 304
s cerAty1.NW_012003680v1       548386 7 +    767749 CTCTTTT
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                480095 7 -  84932903 CTCTTTT
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       228979 7 +    420018 CTCtttt
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                212931 7 - 132174527 TTCTTTT
i calJac3.chr10             C 0 C 0
e colAng1.NW_012115910v1      6764836 0 -   6934359 C

a score=4190.000000
s hg38.chr15_KI270851v1_alt      7799 1 +    263054 C
s panTro5.chr14                550127 1 -  91965084 C
i panTro5.chr14             C 0 C 0
s panPan2.chr14                251231 1 - 107357366 C
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        15264 1 -     16452 C
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75873435 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169249669 1 + 169600520 C
i rheMac8.chr7              I 304 C 0
s macNem1.NW_012011211v1       217766 1 -   3745747 C
i macNem1.NW_012011211v1    I 304 C 0
s cerAty1.NW_012003680v1       548393 1 +    767749 C
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                480102 1 -  84932903 C
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       228986 1 +    420018 c
i manLeu1.NW_012110885v1    C 0 I 895
s calJac3.chr10                212938 1 - 132174527 T
i calJac3.chr10             C 0 C 0
e colAng1.NW_012115910v1      6764836 0 -   6934359 C

a score=1898447.000000
s hg38.chr15_KI270851v1_alt      7800 623 +    263054 ATAGATGGACAAACTAACCTAGATATTTGaaaataaacccttaactgagactgaaaagatcagccatagatttggagaatttgcttgcaaatccaatatttggaaaagggcttttatcacaaatatataaattgacttataattgaacaacaacaaaaccacaaaatttatttttaaaatgggcaaagacctgaagagaaaccacatcta-aaagtaaagataaaaagtgatcagtttgatttttattaggtaaatgtacatttaatattcaaaaaatactgctaacctgctaaaacgggtaaaataaacaatatagacaataccaaatggtgaagagaaagctgaaaatcaggaactttcacttactgctgtt-----gggaatgctaaaatggtacaTAGACAactacagttaataatttattgtatatttgaaaatagctagaagagaaaatttagaatgtccttaacacaaagaaataatcaatgattgagatgaaggatatcccggttatccaggtttgatcactgcacat---attattttatcaaaatatcacatgtaccacataaaggttttgaactgttatgtatctgtataaaTTCAACATT------------------------------TAAAAAT-CAAATGCAGGGGA
s panTro5.chr14                550128 620 -  91965084 GTATATGGATAAACTAACCTATGCCTTTGAAAATAAGCCCTTAcatgagagtgaaa-----agccatagatttggagaatttccttgcaaatccaatatttggaaaagggattttatcacaaatatacaaattaacttacaatt---caacaacaaaaccccagaatttaattttaaaatgggcagagacctgaatagaaaccatatccagaaaacaaacataaaaagtgatcaacttgattttcattaggtgtacttatgtttaatatttaaaaagttctactaaactatgagaatgggtaaaaattacaaggtagacaatatcagatggtgatgaggaagttgaaaaacaggaactttcaccccttgctggt-----gggaatgcCGAAatggcacatagaaaactacagttaataatttattgtatatttcagaatagctacaagataagatttggaatgttcataacactaagaaataatcagtgatagagatgaaggatatcctagttatccagatttgatcactgcacataaaatgcttttatcaaaatatcacttgtaccacctaactattttgaaatattgtgtatcTGTATAAATCAAACATT------------------------------AAAAAACACCAATGCAGTGGT
i panTro5.chr14             C 0 C 0
s panPan2.chr14                251232 620 - 107357366 GTATATGGATAAACTAACCTATGCCTTTGAAAATAAGCCCTTAcatgagagtgaaa-----agccatagatttggagaatttccttgcaaatccaatatttggaaaagggattttatcacaaatatacaaattaacttacaatt---caacaacaaaaccacagaatttaattttaaaatgggcagagacctgaatagaaaccatatccaaaaaacaaacataaaaagtgatcaacttgattttcattaggtgtacttatgtttaatatttaaaaagttctactaaactatgagaatgggtaaaaattacaaggtagacaatatcagatggtgatgaggaagttgaaaaacaggaactttcaccccttgctggt-----gggaatgcCGAAatggcacatagaaaactacagttaataatttattgtatatttcagaatagctacaagataagatttggaatgttcataacactaagaaataatcagtgatagagatgaaggatatcctagttatccagatttgatcactgcacataaaatgcttttatcaaaatatcacttgtaccacctaaatattttgaaatattgtgtatcTGTATAAATCAAACATT------------------------------AAAAAACACCAATGCAGTGGT
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        15265 620 -     16452 ATAGATGGACAAACTAACCTAGATATTTGAAAATAAACCGTTAACTgagactgaagagatcagccatagatttggagaatttgcttgcaaatccgatatttggaaaagggcttttatcacaaagatataaattgacttataattgaacaacaacaaaaccacaaaatttatttttaaaatgggcaaagacctgaagagaaaccacatcta-aaagtcaagataaaaagtgatcagtttgatttttattaggtaaatgtacatttaatattcaaaaaatactgctaacctgctaaaatgggcaaaataaacaatatagacaataccaaatggtgaagagaaagctgaaaatcaggaactttcacttactgctgtt-----gggaatgctaaaatggtacaTAGACAactacagttaataatttattgtatatttgaaaatagctagaagagaacatttagaatgt---taacacaaagaaataatcaatgattgagatgaaggatatcctggttatccaggtttgatcactgcacat---attattttatcaaaatatcacatgtgccacataaaggttttgaactattatgtatcTGTATAAATTCAACATT------------------------------TAAAAAT-CAAATGCAGGGGA
i gorGor5.CYUI01007821v1    C 0 C 0
s nomLeu3.chr6               75873436 617 + 121039945 ATAGATGGATAAACTAACCTAGATATTTGaaaataaacccttaactgagacggaaaagatcagccatagatttggagaatttgcttgccaatccaatatttggaaaagggtttttatcacaaatatacaaatcgacttataattgaacaacaacaaaaccacaaaatttatttttaaaatgggcaaagacctgaagagaaaccacatcta-aaagtaaatataaaaagtgatcagtttgatttttattaggtaaatgtacatttaatcttcaaaaaatactgctaacctactaaaatgggtaaaataaacaatatagacaataccaaatggtgaagagaaagctgaaaatcaggaactttcacttactgctatt-----aggaatgctaaaatggcacatagacaactacagctaataatttattgtatgtttcaaaataact-----agaatatttagaatgttcttaacacaaagaaat-atcaatgattgatatgaaggatatcccagttatccaggtttgatccctgcacat---attattttatcaaaatatcacatgtaccacataaaggttttgaactattatgtatctgtataaaTTCAACATT------------------------------TAAAAAT-CAAATGCAGTGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169249670 641 + 169600520 ATAGATGGATAAACTAACCTAGGCCTTTGAAAATAAACCCTTACCTgagagtgaaaagataagacatagatctggagaatttgcttccaaatcaaatatttggaaaaggacttttatcataaatatacaaattaccttacaattgaacaacaacaaaaccacacaatttaaatttaaaatgggcaaagacctgaacagaaactgcatcta-aaaataaatataaaaagtgatccactggattttcattaggtacatgtatatttaacattgaaaaaatcctactagcctaatagaatatgtaaaatacacaatatagacaataccaaatggtgatgagtaagttataaaacaggaactttcaccacttgatggt-----gggaatgcTGAAatggcacatagacaactacagttaataatttattgtatatttcaaaatagctggaagagaagatttagaatgtgcttaacacaaagaaataatcaatgattgagatgaaggatatcccagttatccagatttgatcactgcacataatattcttttatcaaaatataacatgtagcataaaaaggttttgaacgattacgtatctacataaaTTAAACATT----------------AAAAAAAAAAACCAAAAAAACACCAAGGCATGGGG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011211v1       217767 647 -   3745747 ATAGATGGATAAACTAACCTAGGCCTTTGAAAATAAACCCTTACCTgagagtgaaaagataagacatagatctggagaatttgcttccaaatcaaatatttggaaaaggacttttatcataaatacacaaattaccttacaattgaacaacaacaaaaccacacaatttaaatttaaaatgggcaaagacctgaacagaaactgcatcta-aaaataaatataaaaagtgatccactggattttcattaggtacatgtatatttaacattgaaaaaatcctactaacctaatagaatatgtaaaatacacaatatagacagtaccaaatggtgatgaggaagttgaaaaataggagttttcacaccttgctggtgggaagggaatgctgaaatggcacatagacaactacagttaataatttattgtatatttcaaaatagctggaagagaagatttagaatgtgcttaacacaaagaaataatcaatgattgagatgaaggatatcccagttatccagatttgatcactgcacataatattcttttatcaaaatataacatgtagcataaaaaggttttgaacgattacgtatctacataaaTTAAACATT---------------aaaaaaaaaaaaacaaaaaaaCACCAAGGCATGGGG
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       548394 628 +    767749 ATAGATGAATAAACTAACCTAGGCCTTTGAAAATAAACCCTTACCTgagagtgaaaagataagacatagatctggagaatttgcttccaaatcaaatatttggaaaaggacttttatcataaatatacaaattaccttacaattgaacaa-aacaaaaccacacaatttaattttaaaatgggcaaagacctgaatagaaactgcatcta-aaaat-------aaaagtgatccactggattttcattaggtacatgtatatttaacattgaaaaaatcctactaacctaatagaatatgtaaaatacacaatatagacaataccaaatggtgatgagtaagttataaaacaggaactttcaccacttgatggt-----gggaatgcTGAAatggcacatagacaactacagttaataatttattgtatatttcaaaatagctggaagagaagatttagaatgtgcttaacccaaagaaataatcaatgattgagatgaaggatatcccagttatccagatttgatcactgcacataatattcttttatcaaaatataacatgtaccataaaaaggttttgaactattacatatctatataaaTTAAACATT----------------AAAAAAAA-----AAAAAAACACCAAGGTATGAGG
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                480103 626 -  84932903 ATAGATGGATAAACTAACCTAGGCCTTTGAAAATAAACCCTTACCTgagagtgaaaagataagacatagagctggagaatttgcttgcaaatcaaatatttggaaaaggacttttatcataaatatacaaattaccttacaattgaacaac----aaaccacacaatttaaatttaaaatgggcaaagacctgaatagaaactgcatcta-aaaataaatataaaaagtgacccactggattttcattaggtatatgtatgtttaacattgaaaaaatcctactaacctaatagaatacgtaaaatacacaatatagacaatactaaat-gtgatgagtaagttataaaacaggaactttcaccacttgatggt-----gggaatgctgaaatggcacaTAGACAactacagttaataatttattgtatattccaaaatagctggaagagaagatttagaatgtgcttaacacaaagaaataatcaatgattgatatgaaggatatcccagttatccagatttgatcactgcacataatattcttttatcaaaatataacatgtaccataaaaaggttttgaacgattacgtatctatataaaTTAAACATT----------------AAA----------AAAAAAACACCAAGGCATGGGG
i chlSab2.chr24             C 0 C 0
s calJac3.chr10                212939 641 - 132174527 ATATATGGATAAACTAACATAGActcttgaaaataa-cccttaactgagagtaaaaagataaaccacagatttggagaatttgcttgcaaatcacatatttgaaaaatgactttcatcccagatgcacaaattaccttacatttggacaacaa--aaaccacacaatttaattttaaaatgggcaaagacctgaatgaaaactgcatcta-aaaataaatgtaaaaagtgatcggcttcattttcatttattaaatgtacgtttaatattgaaaaaatcgtactaacctcatagaatgggtaaaatacacaatatagacaataccgcatggtgatgaggaagttgaaaaaaaggaactttcatcccctgctgat-----gggaatgctg-aatggcaTGTAGACAAGTGCAGTTaataatctattatgtatttcagaatagccagaagacatgatttacactgttcttaacacaaacaaacaatcaatgaccgagatgaaggatttcccagttatccagatt-------tgcgcataatattcttttgtcaaaacatcacatgtaccacataaaggttttgagctattatgtatctacataaaTT-AACATTTTTTAAAAACCAGTGCAGAAATAAAAATTAAAAAATC----GTGCAGAGGA
i calJac3.chr10             C 0 C 0
e colAng1.NW_012115910v1      6764836   0 -   6934359 C
e manLeu1.NW_012110885v1       228987 895 +    420018 I

a score=2171119.000000
s hg38.chr15_KI270851v1_alt      8423 567 +    263054 ATCCAGCTAATTGCAGATTCCCATTAGATGGGATGCTCTATGTAATCTGTAAACTAATCAGAATCTGTGGGTTTGTAAAAGGACTTTAGAAATCAACTAGATTACTTGTTTCTAAAGATAAGTCTTGCAAGTTTAATTATTTTCCTAATGGGGGGCAATTTTGAACACAGAAGAAATGTTAACATTTGTTTCTTGTAACTT---TTCTTCTAGTATCAGGAGAGAAGGTTTGCAGGGAGGAATCTGGGACCATCTTTCATGTCTCAACTTTAAAGTGATTACCTCAATGAATA-TTTTCTGATACCCCTGATTAGGATAAGTCT--CATATATGTCCtataaactaaaaacagaattctaagcaacccaactggctgaatggacccttcctcttcaaaaaggagttccagagatacttgaaaagctagtttaggccatgttagcaagaaaggatcagaaatgcctcattatgcactcctgcctttggaattcaagcacaactaaccagcattttcattcaaacagat--cttaaggctcagaaaatagattctttgtagcagtaagataccaaat
s panTro5.chr14                550748 567 -  91965084 ATCCAGCTAATTGCAGATTCTCATTAGATGGGTTGTTCTACATAATCTGTAAACTAATCAGAATCTGTGGGTTTGT-AAAGGACTTTAGAAATCAACTAGGCTGCTTGTTTCTAAAGATAAGTCTCCCTAGTTTAAATATTTTCCTAATGGGTGGCAATTTTGAACATAGAAGAAATAGTAATATTTGTGTCTGGTAAGTTTTCTTCTTCTCGTGTCACGAGA-AAAGTTTGCAGGGAGGAATCTGGGACcatctttcaagtctcaacttcactgtgattacctcagtaagta-ttttctgatacccctgactaagataagtct--cgtatctgtcctAGaaactaaaagtagaattctaagc-atctacctgaccagatggacgcttcctcttcaccaaggagttccagagacacttttaaacctagctcaggccgtgttagaaatagaggatcagaaatgcctcattataccctcctccctttggaattcaagcacagctaaccagcatttttatgaaaacagag--cttaaggcgcagaaaacagattatttgtagcagtaagataccaaat
i panTro5.chr14             C 0 C 0
s panPan2.chr14                251852 567 - 107357366 ATCCAGCTAATTGCAGATTCTCATTAGATGGGTTGTTCTACATAATCTGTAAACTAATCAGAATCTGTGGGTTTGT-AAAGGACTTTAGAAATCAACTAGGCTGCTTGTTTCTAAAGATAAGTCTCCCTAGTTTAAATATTTTCCTAATGGGTGGCAATTTTGAACATAGAAGAAATAGTAATATTTGTGTCTGGTAAGTTTTCTTCTTCTCGTGTCACGAGA-AAAGTTTGCAGGGAGGAATCTGGGACcatctttcaagtctcaacttcactgtgattacctcagtaagta-ttttctgatacccctgactaagataagtct--cgtatctgtcctAGaaactaaaagtagaattctaagc-atctacctgaccagatggatgcttcctcttcaccaaggagttccagagacacttttaaacctagctcaggctgtgttagaaatagaggatcagaaatgcctcattataccctcctccctttggaattcaagcacagctaaccagcatttttatgaaaacagag--cttaaggcgcagaaaacagattatttgtagcagtaagataccaaat
i panPan2.chr14             C 0 C 0
s gorGor5.CYUI01007821v1        15885 567 -     16452 ATGCAGCTAATTGCAGATTCCCATTAGATGGATTGTTCTGTATAATCTGTAAACTAATCAGAATCTGTGGGTTTGTAAAAGGACTTTAGAAATCAACTAGATTACTTGTTTCTAAAGATAAGTCTTGCAAGTTTAATTATTTTCCTAATG---GGCAATTTTGAACATAGACGAAATGTTAACATTTGTTTCTTGTAACTTTTCTTCTTCCAGTATCAGGAGAGAAGGTTTGCAGGGAGGAATCTGGGACcatctttcaagtctcaactttaaagtgattacctcaatgaata-ttttctgatacccctgattaggATAAGTCT--CATATATGTCCtataaactaaaaatagaattctaagcagcccaactggctgaatggacccttcctcttcaaaaaggagttccagagacacttgaaaaactagtttaggccatgttagaaagagaggatcagaaatgcctcattatgcactcctgcctttggaattcaagcacaactaaccagcattttcattcaaacagat--cttaaggctcagaaaacagattctttgtagcagtaagataccaaat
i gorGor5.CYUI01007821v1    C 0 N 0
s nomLeu3.chr6               75874053 561 + 121039945 ATCCAGCTAATTGCAGATTCCCATTAGATTTGATGTTCTGTATAACCTGTAAACTAATCAGAATCTGTGGGTTTCT-AAAGGACTT--------AACTAGATTACTTGTTTCTAAAGATAAGTCTTGCAAGTTTAATTATTTTCCTAATGGGTGGCAATTTTGAACATAGAAGAAATGTTAACATTTGTTTCTTGTAACTTTTCTTCTTCTAGTAACAGGAGAGAAGGTTTGCAGGGAGGAATCTGGGACCATCTTTCAAGTCTCAACTTTAAAGTGATTACCTCAATGAATA-TTTTCTGATACCCCTGATTAGGATAAGTCT--CATATATGTCCtataaactaaaaatagaattctaagcaccccaactggctgaatggacccttcctcttcaaaagggagttccagagacacttgaaaaactagtttaggccatgttagaaagagagaatcagaaatgcttcattatgcactcctccctttggaatgcaagcacaactaaccagcattttcattcagacagat--cttaaggctcagaaaacagattatttgtagcagtaagataccaaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169250311 572 + 169600520 ATCCAGCTAAGTGCAGATTCCCATTAGATGGGATGTTCTGCATAATCTGTAAACTAATCAGAATCTTTGTGCTTGT-AAATGACTTTAGATATCAGCTAGACTACTTGTGTCTAAAGGGAAGTCTCCCAACTTTAACTCTTTTCCTAATGGGTGACGATTTTGAACATAAAAGAAATGCTAACATTTGTTTCTGGTAAGTTTTCTTCTTCTACTGTCAGGAGAAAAGGATTGCAGGGAGGAATCTGAGACCATCTTTCATGTCTCACCTTCAATGTGATTGCCTCAGTAAATTTTTTTCCCATACCCCTGACTAGGAGAAGTCT--CATATACATCCtatgaagtaaaagcagaattctaagcaccccaactgattggatggaccctttctcttcactaaggagttccagagactcttgaaaaactagctcaggtcatgttagaaacagaggatcagaaatgcctcatcatgcactcctccctttagaattcaagcacaactagccagcattttcatgaaaacagagaactcaaggctcagaaaacagattctttgtagaagtaagataccaaat
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011211v1       218414 572 -   3745747 ATCCAGCTAAGTGCAGATTCCCATTAGATGGGATGTTCTGCATAATCTGTAAACTAATCAGAATCTTTGTGCTTGT-AAATGACTTTAGATATCAGCTAGACTACTTGTGTCTAAAGGGAAGTCTCCCAACTTTAACTCTTTTCCTAATGGGTGACGATTTTGAACATAAAAGAAATGCTAACATTTGTTTCTGGTAAGTTTTCTTCTTCTACTCTCAGGAGAAAAGGATTGCAGGGAGGAATCTGAGACCATCTTTCATGTCTCACCTTCAATGTGATTGCCTCAGTAAATTTTTTTCCCATACCCCTGACTAGGAGAAGTCT--CATATACATCCtatgaagtaaaagcagaattctaagcaccccaactgattggatggaccctttctcttcactaaggagttccagagactcttgaaaaactagctcaggtcatgttagaaacagaggatcagaaatgcctcatcatgcactcctccctttagaattcaagcacaactagccagcattttcatgaaaacagagaaatcaaggctcagaaaacagattctttgtagaagtaagataccaaat
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       549022 572 +    767749 ATCCAGCTAAGTGCAGATTCCCATTAGATGGGATGTTCTGCATAATCTCTAAACTAATCAGAATCTTTGTGCTTGT-AAATGACTTTAGAAATCAGCTAGACTACTTGTGTCTAAAGGGAAGTCTCCCAACTTTAACTCTTTTCCTAATGGGTGACGATTTTGAACATAAAAGAAATGCTAACATTTGTTTCTGGTAAGTTTTCTTCTTCTACTGTAAGGAGAAAAGGATTGCAGGGAGGAATCTGAGACCATCTTTCATGTCTCAACTTCAATGTGATTGCCTCAGTAAATAGTTTTCTGATACCCCTGGCTAGGAGAAGTCT--CGTATATGTCCTACGAAGCCAAGGCagaattctaagcaccccaactgattggatggaccctttctcttcactaaggagttccagagactcttgaaaaactagctcaggtcatgttagaaatagaggatcagaaatgcctcatcatgcactcctccctttagaattcaagcacgactagccagcattttcatgataacagagaactcaaggctcagaaaacagattctttgtagaagtaagataccaaat
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                480729 573 -  84932903 ATCCAGCTAAGTGCAGATTCCCATTAGATGGGAGGTTCTGCATAATCTCTAAACTAATCAGAATCTTTGTGCTTGT-AAATGACTTTAGAAATCAGCTAGACTACTTGTGTCTAAAGAGAAGTCTCCCAAGTTTAACTCTTTTCCTAATGGGTGACGATTTTGAACATAAAAGAAATGCTAACATTTGTTTCCAGTAAGTTTTCTTCTTCTACTGTCAGGAGAAAAGGTTTACAGGGAGGAATCTGAGA-CACCTTTCATGTCTCAACTTCAATGTGATTGCCTCAGTAAATTTTTTTCCCATACCCCTGACTAGGAGAAGTCTCACATATACACCCtatgaagtaaaagcagaattctaagtgccccaattgattggatggaccctttctcttcactaaggagttccagagactcttgaaaaactagctcaggtcatgttagaaatagaggatcagaaatgcctcatcatgcactcctccctttggaattcaagcacgactagccagcattttcatgaaaacagagaactcaaggctcagaaaacagattctttgtagaagtaagataccaaat
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       229882 572 +    420018 ATCCAGCTAAGTGCAGATTCCCATTAGATGGGATGTTCTGCATAATCTGTAAACTAATCAGAATCTTTGTGCTTGT-AAATGACTTTAGAAATCAGCTAGACTACTTGTGTCTAAAGGGAAGTCTCCCAACTTTAACTCTTTTCCTAATGGGTGACGATTTTGAACATAAAAGAAATGCTAACATTTGTTTCCGGTAAGTTTTCTTCTTCTACTGTCAGGAGAAAAGGATTGCAGGGAGGAATCTGAGACCATCTTTCATGTCTCAACTTCAATGTGATTGCCTCAGTAAACTTTTTTCCCATACCCCTGACTAGGAGAAGTCT--CATATACATCCtatgaagtaaaggtagaattctaagtgccccagctgactggatggaccctttctcttcactaaggagttccagagactcttgaaaaactagctcaggtcatgttagaaacagaggatcagaaatgcctcatcatgcactcctccctttagaattcaagcacgactagccagcattttcatgataacagagaactcaaggctcagaaaacagattctttgtagaagtaagataccgaat
i manLeu1.NW_012110885v1    I 895 C 0
s calJac3.chr10                213580 499 - 132174527 ATCTGGCTAATTTCAGAGTCCC--------------------TAATCTGTCAACTAATCAAAATCATTG---------------------------------------------------AGTGCCCCAAGTTTAATTATTTTCCCAATGGGTGGTGATTTGGAACACAGAGGAAACATTAACATTTGTTTTTGGTAAGATTTGTTCTTGTAGTGTCTAGAGGAAAGGCTTTCAGGGAGGAGTCTGATGTCATCGTTCAAGTCTCAACCTCCATGTGATTCCCTGAGGAAATA-TCCTCCC-CACCCCTGACTGGGATACGTCT--CACATGTGTCCtataaagtacaagtcgaattctgagcgcccacactgactggatggactcttcctcttcaccaaggagttccagagacacttgaaaaactagctcaggccatgttaaaaatggaagatcagaaatgcctcatcatacacttctccctttggaattcaagtgcagctgaccagcattttcagtaaaacggaa-gcacgaggctcagaaaacagattctttgtagcaggaacacgccaaat
i calJac3.chr10             C 0 C 0
e colAng1.NW_012115910v1      6764836   0 -   6934359 C

a score=756503.000000
s hg38.chr15_KI270851v1_alt      8990 223 +    263054 tctaacctgactcaagaatagcatcacatgac----agcaggccttgagaggaatcaaagtcttttgccctaaagtatatt--tttgacatatttt-aaattgccctgcacagttatattttgtgagagaaatttacattctgtagagaatcgctttacctttccaggtgtttttgttatatggaggagattaactgagagtctagcatcttttaaaggtcttaatagaa
s panTro5.chr14                551315 230 -  91965084 tctaaccttactcgagaatatcatcacatgacagagagcaggcattgaaaggaatcaaaggcttttaccctaaaatatattcctttgacatattttaaaatagccaggcacagttatcttttgtgagagagatttacattctgtagagaatctccttccctttccaggtctttttcttataccgaggagattagctgagggtctagcttcttttaaaggtcttaggagaa
i panTro5.chr14             C 0 C 0
s panPan2.chr14                252419 230 - 107357366 tctaaccttactcgagaatatcatcacatgacagagagcaggcattgaaaggaatcaaaggcttttaccctaaaatatattcctttgacatattttaaaatagccaggcacagttatcttttgtgagagagatttacattctgtagagaatctccttccctttccaggtctttttcttataccgaggagattagctgagggtctagcttcttttaaaggtcttaggagaa
i panPan2.chr14             C 0 C 0
s nomLeu3.chr6               75874614 227 + 121039945 tctaacctgactcaagaatagcatcacatgacagagagcaggccttgagaggaatcaaagtcttttgccctaaagtatatt--tttgacatatttt-aaattgccctgcacagttatattttgtgagagaaatttacattctgtagagaatctctttccctttccaggtggttttgttgtatggaggagattaactgagagcctagcatcttttaaaggtcttaatagaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              169250883 229 + 169600520 tccaacctgactcaagaatagcatcatatgacagagagcaggccttgaaatgaatcaaaggcttttaccctaaaatgtatttctatgacatattttaaaatcgccctgcacagttatcttttgtgagagaaatttacattctgcagagaatctccttccctttccaggtc-ttttgttatcctgaagggatcagctaagagtccagcatcttttaagagtcttaacagaa
i rheMac8.chr7              C 0 N 0
s macNem1.NW_012011211v1       218986 229 -   3745747 tccaacctgactcaagaatagcatcatatgacagagagcaggccttgaaatgaatcaaaggcttttaccctaaaatgtatttctatgacatattttaaaatcgccctgcacagttatcttttgtgagagaaatttacattctgcagagaatctccttccctttccaggtc-ttttgttatcctgaagggatcagctaagagtccagcatcttttaaaggtcttaatagaa
i macNem1.NW_012011211v1    C 0 C 0
s cerAty1.NW_012003680v1       549594 229 +    767749 tccaacctgactcaagaatagcatcatatgacagagagcaggccttgaaatgaatcaaaggcttttaccctaaaatgtatttctatgacatattttaaaatcgccctgcacagttatcttttgtgagataaatttacattctgcagagaatctccttccctttccaggtc-ttttgttatcctgaagggatcagctaagagtccagcatcttttaaaggtcttaatagaa
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24                481302 229 -  84932903 tccaacctgactcaacaatagtatcacatgacagagagcaggccttgaaatgaatcaaaggcttttaccctaaaatgtatttctttgacatattttaaaatcgcactgcacagttatcttttgtgagagaaatttacattctgcagagaatctccttccctttccaggtc-ttttgttatcctgaggggattagctaagagtccagcatcttttaaaggtcttaatagaa
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1       230454 229 +    420018 tccaacctgactcaagaatagcatcatatgacagagagcaggccttgaaatgaatcaaaggcttttaccctaaaatgtatttctatgacatattttaaaatcgccctgcacagttatcttttgtgagagaaatttacattctgcagagaatctccttccctttccaggtc-ttttgttatcctgaagggatcagctaagagtccagcatcttttaaaggtcttaatagaa
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10                214079 219 - 132174527 tctaacctgactcaatctcagcctcgcatgacacagaacaggcctcga--------aaggtcttttaacctaaaatatatttctctgacatattttacaatcgccctgcacagttactttttgtgagagaaattcacgttctgtagagaatctccttccgtttgcaggacgttttgttatactga---gattggctgagagtctagcatcttttaaaggtcttaatagaa
i calJac3.chr10             C 0 C 0
e colAng1.NW_012115910v1      6764836   0 -   6934359 C

a score=677208.000000
s hg38.chr15_KI270851v1_alt     9213 275 +    263054 aacacttgccatctattgcctctaagggtggccacataagagacttcatctgcataataagaatattgttctccaaagcccgctctctaaatctagaaac-tttttcaactgatttcaggtctttaga-taaaaccttaagtcttttaatcaattgccaataagaaaaactttgaatccacctgtaagctgtaatcccctccccacactgcctcacttcttgctgttttgtctttatagaccaaatcaacacatatctcacatgtattgattgatgt
s panTro5.chr14               551545 274 -  91965084 aacatttcccagctattgcctctaaaggtggtcacataagagacttcatctacatagtaagaatcttgttctccaaaacctgttatcttaacctagaaacatttttctaccggtttcaggtctttaga-aaaaagcttaaatctttcaatcaattgtcaatcagaaaatattcgaactca-ctgtaagttgtaatccccgccccacacggcctcacttctagctgttttgtctttatggaccaaatcaacatatatctcacatgtattggttggtg-
i panTro5.chr14             C 0 C 0
s panPan2.chr14               252649 274 - 107357366 aacatttcccagctattgcctctaaaggtggtcacataagagacttcatctacatagtaagaatcttgttctccaaaacctgttatcttaacctagaaacatttttctaccggtttcaggtctttaga-aaaaagcttaaatctttcaatcaattgtcaatcagaaaatattcgaactca-ctgtaagttgtaatccccgccccacacggcctcacttctagctgttttgtctttatggaccaaatcaacatatatctcacatgtattggttggtg-
i panPan2.chr14             C 0 C 0
s nomLeu3.chr6              75874841 274 + 121039945 aacatttcccatctattgcctctacaggtggccacataacagacttcatctacataataagaatattgttctccaaagcccgctctgttaatctagaac--tttttcaactgatttcaggtctttaga-taaaaccttaagtctttaaatcaattgccaataagaaaaactttgaatccacctgcaagctgtaatcccctccccacactgcctcacttctagctgttttgtctttatggaccaaatcaacacatatctcacatgtactgattgatgt
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011211v1      219215 274 -   3745747 aatatttgtcatctattgtctctaagggtggccacataagagactccttcag--taataagaatcttgttctccaaaacccattatcttaacccagacactttgttatactgatttcaggtctttagataaaaaacttaagtctttcaatcaattgccaatcagaaaatctttgaatccacctgtaagctgtaatcccct-cccacactgcctcacttctagtggttttgtctttattgaccaagtcaacacatatctcacatgtatcaattgatgt
i macNem1.NW_012011211v1    C 0 I 15
s cerAty1.NW_012003680v1      549823 274 +    767749 aatatttgccatctattgtctctaagggtggccacataagagacttcttcag--taataagaatcttgttctccaaaacccattatcttaacccagacactttgttatactgatttcaggtctttagataaaaaacttaagtctttcaatcaattgccaatcagaaaacctttgaatccacctgtaagctgtaatcccct-cccacactgcctcacttccagcggttttgtctttattgaccaagtcaacatatatctcacatgtatcaattgatgt
i cerAty1.NW_012003680v1    C 0 C 0
s chlSab2.chr24               481531 274 -  84932903 aatatttgccatctattgtctctaagggtggcgacataagagacttcttcag--taataagaatcttgttctccaaaacccattatcttaacccagacactttgttatactgatttcaggtctttagataaaaaacttaagtctttcaatcaattgccaatcagaaaatctttgaatccacctgtaagctgtaatcccct-cccacactgcctcacttctagcggttttgtctttattgaccaagtcgacatatatctcacatgtatcaattgatgt
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012110885v1      230683 274 +    420018 aatatttgccatctattgtctctaagggtggccacataagagacttcttcag--taataagaatcttgttctccaaaacccattatcttaacccagacactttgttatactgatttcaggtctttagataaaaaacttaagtctttcaatcaattgccaatcagaaaacctttgaatccacctgtaagctgtaatcccct-cccacactgcctcacttctagcggttttgtctttattgaccaagtcaacatatatctcacatgtatcaattgatgt
i manLeu1.NW_012110885v1    C 0 C 0
s calJac3.chr10               214298 272 - 132174527 attatctgctgtttattgcctctacaggcggccacagaagagatttcatctacatgatacgaatcttcttctccaaaacttgttatcttaacccagacac-ttttcctactgatttcaggtctttaga-taaaaacgtaattctttccatcagttgccaatcagaaagtattttaattcacctg-gagccg--acaccctccccacagtgcctcacttgcagctgtttcgtcttcatggaccagatcaacacataactcacatgtgttggttggtgt
i calJac3.chr10             C 0 C 0
e colAng1.NW_012115910v1     6764836   0 -   6934359 C

a score=-971.000000
s hg38.chr15_KI270851v1_alt     9488 3 +    263054 caa
s panTro5.chr14               551819 1 -  91965084 --a
i panTro5.chr14             C 0 C 0
s panPan2.chr14               252923 1 - 107357366 --a
i panPan2.chr14             C 0 C 0
s nomLeu3.chr6              75875115 3 + 121039945 caa
i nomLeu3.chr6              C 0 C 0
s cerAty1.NW_012003680v1      550097 2 +    767749 -ta
i cerAty1.NW_012003680v1    C 0 I 13
s chlSab2.chr24               481805 2 -  84932903 -ta
i chlSab2.chr24             C 0 I 13
s manLeu1.NW_012110885v1      230957 2 +    420018 -ta
i manLeu1.NW_012110885v1    C 0 I 13
s calJac3.chr10               214570 3 - 132174527 tta
i calJac3.chr10             C 0 C 0
e colAng1.NW_012115910v1     6764836 0 -   6934359 C
e macNem1.NW_012011211v1      219489 15 -   3745747 I

a score=14798.000000
s hg38.chr15_KI270851v1_alt     9491 28 +    263054 atgtctctctaagacattagatataaga-
s panTro5.chr14               551820 28 -  91965084 ctgtctctctagtacattaaatttaagc-
i panTro5.chr14             C 0 I 1
s panPan2.chr14               252924 28 - 107357366 ctgtctctctagtacattaaatttaagc-
i panPan2.chr14             C 0 I 1
s nomLeu3.chr6              75875118 28 + 121039945 atgtctctctaagacattagatataagc-
i nomLeu3.chr6              C 0 I 1
s calJac3.chr10               214573 29 - 132174527 aagtctctccaagacattccattgaagct
i calJac3.chr10             C 0 C 0
e colAng1.NW_012115910v1     6764836  0 -   6934359 C
e manLeu1.NW_012110885v1      230959 13 +    420018 I
e cerAty1.NW_012003680v1      550099 13 +    767749 I
e macNem1.NW_012011211v1      219489 15 -   3745747 I
e chlSab2.chr24               481807 13 -  84932903 I

a score=291117.000000
s hg38.chr15_KI270851v1_alt     9519 106 +    263054 gcaatcaaaccactt--------tgggcacatgttctcaaggtcttctaagg-tgtgtcacagggcatggtcctcacatttggctcagaataaatctctctaaatattttgcaaa
s panTro5.chr14               551849 106 -  91965084 gccatcaagccactt--------tgggcacatgttctcaagatcttctggggctgt-tcacagttcatggtcctcacattcgcctcagaataaatctctctaaatattttgcaag
i panTro5.chr14             I 1 C 0
s panPan2.chr14               252953 106 - 107357366 gccatcaagccactt--------tgggcacatgttctcaagatcttctggggctgt-tcacagttcatggtcctcacattcgcctcagaataaatctctctaaatattttgcaag
i panPan2.chr14             I 1 C 0
s nomLeu3.chr6              75875147 114 + 121039945 gcaatcaaaccactttggacacatggacacatgttctcaagatcttctaagg-tgtgtcacagggcatggtcctcacatttggcccagaataaatctctctaaatattttgcaaa
i nomLeu3.chr6              I 1 C 0
s macNem1.NW_012011211v1      219504 107 -   3745747 gccatcaagccactt--------tgggcacatgttctcaagatcttgtgggactgtgtcacagggcatggccctcacatttggctcagaataaatctctctaaatattttgcaaa
i macNem1.NW_012011211v1    I 15 N 0
s cerAty1.NW_012003680v1      550112 107 +    767749 gcaatcaagccactt--------tgggcacatgttctcaagatcctgtggggctgtgtcacagggcatggccctcacatttggctcagaataaatctctctaaatattttgcaaa
i cerAty1.NW_012003680v1    I 13 N 0
s chlSab2.chr24               481820 107 -  84932903 tccatcaagccactt--------tgggcacatgttctcaagatcttctggggctgtgtcacagggcatggccctcacatttggctcagaatacatctctctaaatattttgcaaa
i chlSab2.chr24             I 13 N 0
s manLeu1.NW_012110885v1      230972 107 +    420018 gcaatcaagccactt--------tgggcacatgttctcaagatcttgtggggctgtgtcacagggcatggccctcacatttggctcagaataaatctctctaaatattttgcaaa
i manLeu1.NW_012110885v1    I 13 N 0
s calJac3.chr10               214602 107 - 132174527 gcaatgaaaccactg--------tgggcacctgttctcaaggtcttcgggggctgtgtcccagggcacagtcctcacatctgactcaggatacatctctctaaacattctgcaaa
i calJac3.chr10             C 0 C 0
e colAng1.NW_012115910v1     6764836   0 -   6934359 C

a score=2332.000000
s hg38.chr15_KI270851v1_alt     9625 3 +    263054 gtt
s panTro5.chr14               551955 3 -  91965084 gtt
i panTro5.chr14             C 0 N 0
s panPan2.chr14               253059 3 - 107357366 gtt
i panPan2.chr14             C 0 N 0
s nomLeu3.chr6              75875261 3 + 121039945 gtt
i nomLeu3.chr6              C 0 C 0
s calJac3.chr10               214709 3 - 132174527 gct
i calJac3.chr10             C 0 N 0
e colAng1.NW_012115910v1     6764836 0 -   6934359 C

a score=281370.000000
s hg38.chr15_KI270851v1_alt     9628 3308 +    263054 acctttttTTAattatactttaagtgatgggatacatgtgcagaacgtgcaggtttgttacatagctatacatatgccatggtggtttgctgcacccatcaacccgtcatctatattaggtgtttctcctaatgttattcctcccctagcccctcaccccccaacaggccctgttgtgtgatgttcccctccctgtgtccatgtgttctcattgttcaactctccctcatgagggagaacatgcagtgtttggttttctgttcctgtgttagtttgctgaggatgatggtttccagattcatccatgtccttgcaaagaacatgaactcattcttttttatagctgcatagtattccgtaatgtatatgtgacatattttctttatccggtctatcactgatgggcattcgggttggttccaagtctttgctattgtcagcggtgctgcaataaacatacacgtgcatgtgtctttatagtggattaattgttcatcctttgggtatatacccagtaatgggattgctgggacaaatggtatctctaggcctagatccttgaggaattgccacagtgtcttccacaatggttgaactaatttaccctcccaccaatagtgtaaaagcattcctatttctctacatcctctccagcatctgttgtttcctgactttttaatgattgccattctaactggcatgagatgctatctcactgtggttttgatttgcatttctctaatgaccagcgatgatgacctttttttcatatgtttgttggtctcataaatgttttcttttgagaagtgtctgctcatatccttcacccactttttgatggcgttgtttgttttttttcttttaaatttgtctaagttccttagagattctggatattagctctttgtcagatggatagattgcaaaaattttctcccattctgtaggttgcctgttcactccaatgacagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtcttacatttaagtctttaatccatcttgagttaatttttgtgtaaagtgtaaggaaggggtccagttttagttttctgcatatgtctagccagttttccatacaccatttattaaataggaaatcctttccccattgcttgtttttgtcaggtttgtcagagatcagat-gttctagatgtgtgggattatttctgaggcccctgttctgttccattagtctatatatctgttttggtgtcagcatcatgctgttttggttactgtagccttatagtatagtttgaaatcaggtagcatgatgcctccagctttgtttgtttgtttgtttttgcttaggattgtcttcactttacagtctcttttttggttccatatgaaatgtaaagtagttttttttctaattctgagaagaaagtcaatggtagcttgatggggatagcattaaatccataaattactttgggcagtatggccgtttttacaatattgattcttcctttccatgtccatgaaatatttttccatttgtttgtgtcctctcttatttccttgggcagtggtttgtagttctccttgaagagatccttcacatcccttgtaagttgtattcctaggtattttattctctttgtagcaattgtgaatgggagttcactcattatttggttctctggttgtctattattggtgtataggaattgttgtgatttttgcacattgattttgtatcctgagactttgctgaagtcgcttatcagcttaaggagattttgggctgagaggaggaggttttctaaatatacaatcatgtcatctgcaaacagagataatttgacttcctctctttctatttgaatacctttatttctttctctggcctgattgctctggccagagcttccaatactatgttgaataggaggagtggtgagggagggcatctttgtcttttgctggttttcaaagagaatgcttccagtttatgcccattcagtatgatattggccgtggatttgtcatgaatagctcttattattttgaaatatgttccatcaatacctagtttattgaaagtttttagcatgaagtggtgttgaattttattgacggccttttctgcttctattgagataattgtgtgtttttttccattggttctgtttatgtgatggattatgtttattgatttgtgtatgttgaaccagccttgcatcccagggatgaagccgacttgatcatggtggatcagcttctttatgtgctgctggatttggttggccagtattttattgaggatttttgcatcaatgtttatcagggatataggcttgaaatttttttggtgttgtgtctctgacaggttttggtatcaggatgatgctggcttcataaaatgagttagggtggagtccctctttttctgttgtttggaatagtttcagaaggaatggtaccagcacctctttgtacctctggaagaattcatctgtgaatctgtcttgacctgggctttttttggttggtaggcaattaattactgcctcaatttcagaacttgttattggtctcttcagagattcgacctcttcctggtttagttttgggagggtgtatgtgtccaggaagttatccatttcctctgattttctagtttatttgtatagaggtgcttatagtattctctaatggtagtttgtatttctgtgggatgagtgacgatatgcctttcctcattttttattgtgtctatttgattcttctctcttttcttctttattagtctggctagcagtctatctattttgttaatcttttcaaaaaatcacctactggattcactgattttttgaagggatttttgtgtctctatctctttcagttctgctctgatcttagttatttcttgtcttctgctagcttttgaattagtttgctctcgcttctctagttctttaattgtgatgttagtgtgttgattttagatctttcatgcttcctcttgtgggcatttagtgctataaatttccctctaaacactgctttagctgggtcccagagattctggtacattgtatctttgttctcattggtttcaaagaacttatttatttctgccttaatttcattatttacccagtagtcattcaggagcagcttgttcagttttcatgt
s nomLeu3.chr6              75875264 3288 + 121039945 ggctttttAAAattatactttaagttatgggatatatgcacagaatgtgcaggtttgttacataggtatacatatgccatggtggtttgctgcacccatcaacccatcatctatattaggtatttctcctaatgctattcttcccctagcccctcgccccccaacaggccctgttgtgtgatgttccccttcctgtgtccatgtgttctcattgttcagctctcacttatgagggagaacatgcggtgtttggttttctgttcctgggttagtgtgctgaggatgaaggtttccagattcatccacgtccctgcaaagaacatgaactcattcttttttatggctgcatagtattctgtgatgtatatgtgccacattttctttatccagtctatcactgatgggcatttgggttggttccaagtctttgctattgtcaacagtgctgcaataaacatacacgtgcatgtgtctttatagtggattaatttttaatcctttgggtatatacccagtaatgggattgctgggacaaatgatatttgtggttctagatccttgaggaattgccacactgtcttccacagtggtttaactaatttacactcccaccaacagtgtaaaagcatccctatttctccacatcctctccagcatctgttgtttcctgactttttaatgatcgccattctaactggtgtgagatggtatctcagtgtggttttgatttgcatttctctaatgaccagcgaggatgatctttttttcatatgtttgttggccacataaatgttttcttttgagaagtgtctgctcgtatccttcacccactctttgatgg------------tttttttttttaatttgtctaagtcccttatagattctggatattagccctttgtcagttggatagattgcaaaaattttctcccattctgtaggttgcctgttcactccaatgatagtttcttttgctgtgcagaagctatttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgcccatgcctatgtcctaaatgacattgcctatgttttcttctagggtttttatggttttaggtctaacatttaagtctttaatccatcttgagttaatttttgtgtaaagtgtaaggaaggggtccagttttagtattctgcatatgtctagccagttttcccagcaccatttcttaaatagggaatcctttccccattgcttgtttttgtcaggtttgtcagagatcagatggctctagatgtgtggaattatttctgaggcctctgttctgttcctttggtctatatatctgttttggtgtcagcatcatgctgttttggttactgtagccttgtagtatagtttgaaatcaggtagcatgatgcctccagc----tttgtttgtttgttcttgcttaggattgtctttgctttacagtctcttttttggttccatatgaaatgtaaagtagttttttttctaattct-tgaagaaagtcaacggtagcttgatggggatagcattaaatctataaattactttgggcagtatggccatttttacaacattgattcttccaacccctgagcgtgaaatatttttccatttgtttgtgtcctctcttattttctttggcagtgatttgtatttctccttgaagagatccttcacatcccttgtaagttgtattcctaagtattttattctctttgtagcaattgcgaatgggagttcactcattatttggttctctggttgtctattatttgtgtgtagggattcttgtgatttttgcacattgatgttgtatcctgagactttgctgaagttgcttatcagcttaaggagatttggggctgagaggatgaggttttctaaatatacaatcatgtcatctgcaaacagagataatttgacttcctctctttctatttgaatacctttatttctttctctggcctgattgctctggccagagtttccaatactacgttgaat---aggagtggtgagggagggtatccttgtcttttgctggttttcaaagggaatgcttccagtttatgcccattcagtaagatattggctgtggatttgtcataaatagctcttactattttgagatatattccatcaatacctagtttactgaaattttttagcatgaagcggtgttgaattttatcaatggccttttctgcttctattgggataatcgtgtg-ttttttccattggttctgtttatgtgatggattatgtttattgatttgtgtatgttgaaccagccttgcatcccagggatgaagccaacttgatcatggtggatcagcttcttcatgtgctgctggatttggttggccagtattttattgaggatttttgcatcgatgtttatcagggatataggcctgaaatttttttgatgttgtgtctctgacaggtttcggtatcaggatgatgctgctctcataaaatgagttagggaggagtccctctttttctattgtttggaatagtttcagaaggaatggtaccagcacctctttgtacctctggaagaattcatctgtgaatctgtcttgacctggactttttttggttggtaggcaattaattactgcctcaatttcagaacttgttattggtctcttcagagattcgacttcttcctggtttagtcttgggagggtgtatgtgtccaggaagttatccatttcttctgactttctagtttatttgtgtagaggtgcttatagtattctctaatggtagtttgtatttctgtgggatcagtgatgatatgcctttcatcattttttattgtgtctatttgattcttctctcttttcttctttattagtctggctagcagtctatctattttgttaatcttttcaaaaaaccacctactggattcactgattttttgaagggatttttatgtctctatctccttcagttctgctctgatcttagttatttattgtcttctgctagcttttgaatttatttgctctcacttctctagttctttaattgtgatgttagtgtgttgattttagatctttcctgcttcctcttgggggcatttagtgctataaatttccctctaaacactgctttagctgtgtcccagagattctggtacattgtatctttgttctcattggtttcaaggaacttatttatttctgccttgatttcattatttacccagtagtcattcaggagcagcttgttcagttttcatgt
i nomLeu3.chr6              C 0 I 299
e colAng1.NW_012115910v1     6764836    0 -   6934359 C

a score=101389.000000
s hg38.chr15_KI270851v1_alt    12936 1169 +    263054 acttgagcagttttgaagagtttcttaatcctgagttctaatttgattgcactgtggtctgggagactgtttgttctgatttccattcttttgtatttgctgaagagtgttttacttccaataatatggtcagttttagaataagtgtgatgtggtgctgagaagaatgtatattctgttgatttggggtggagatttatgtagatgtccattagatccacttggtccagagctgagttcaagttctgaatatccttgttaattttctgtctcattgatctgtcaaatattgacagtgaggtgttaaagtctccagctattattgtgcgggagtctaagtctctttgtaggtctctaagaacttgctttatgaatctgggtgctcctgtattgggtgaatatatatttaggatagttagctcttctcgttgcattgatacctttaccattaggtaatcctcttctttgtcttttttgatgtttgttggtttaaagtctgttttataacacactaggggtgcaaccactatttttttttctttccatttgattggtaaatattcctgcatccctttattttgagaccttggtgagtctttgcacatgagatgcgtctcctgactacagcacaccaatgggtcttgagtcttgatctaatttgtcagtctctgtgttttaattggggcatttagcctgtttacatttaaggttaacattgttatgtataaatttgatcctgtcattatgatgttagctgattgttgtgcccattagttgatgtagtttcttcatactgttgatgatctttacaatttggtatgtttttgcagtggctggtactggtttttcctttccatatttagtgcttccctcagaagctcttgtaaggcaggcctggtggtgcaaaaaatctcagtatttgcttgtctgtaaaggtttttatttatcctttgcttatgaagtttagtttggctggatatgaaattctgggttgaaaattcttttctttaagaatattgaatattggcccccactctcttctggcttgtagggtttctgcagagagatctgctgatagtctgatgggcttccctttacgggtaaaccgacctttctctctggctgcccttaacattttttcattcatttcaaccttggtgaatctgaag
s nomLeu3.chr6              75878851 1167 + 121039945 acttgtgcagttttgaggagtttcttaatcctgagttctaatttgattgcaccgtggtctgggagactgtttgttctgatttccgttcttttgcatttgctgaggagtgttttacatccaataatatggtcaattttagaataagtgcaatgtggtgctgagaacaatgtatattctgttgatttggggtggagatttatgtagatgttcattaggtccacttggtccagagctgagctcaagttctgaatatccttgttaattttctgtctcattgatctgtcgaatattgacagtggggtgttaaagtctccaactattattgtgtgggagtctaagtctctttgtaggtctctaagaacttgctttatgaatctgggtgctcctgtattgggtgaatatgtatttaggatagttagctcttcttgttccatcgatacctttaccattaggtaatcctcttctttgtcttttttgatgtttgttggtttaaagtctgttttatatcacactaggagtgcaactgctgtttgtttt-ctttccatttgattggtaaatattcctgcatccctttattttgagacctaggtgagtctttgcacatgagatgcatctcccgactacagcacaccgatgggtcttgagtcttgatctaatttgtcagtctctgtcttttaattggggcacttagcctgtttacatttaaggttaacattgttatgtgtaaatttgatcctgtcattatgatgttagctgattgttgtgcccattagttgatgcggtttcttcatattgttgatgatctttacaatttggtatgtttttgcagtggctggtactggtttttcctttccatatttagtgcttccctcagaagctcttgtaaggcaggcccggtggtgcaaaatctgtcagtatttgcttgtctgtgaaggcttttatttctcgttcgcttaagaagctta-ttcggctggatatgaaattctgggttgaaaattcttttctttaagaatattgaatattggcccccactctcttctagcttgtagggtttctgcagagagatctgctgacagtctgatgggcttccctttacgggtaaactgacctttctctctggctgcccttaacattttttcattcatttcaaccttggtgaatctgaag
i nomLeu3.chr6              I 299 C 0
e colAng1.NW_012115910v1     6764836    0 -   6934359 C

a score=1086381.000000
s hg38.chr15_KI270851v1_alt    14105 4137 +    263054 [encoded data, 4281 characters]
s gorGor5.CYUI01000350v1        1198 4150 -    142253 [encoded data, 4281 characters]
i gorGor5.CYUI01000350v1    N 0 I 16094
s nomLeu3.chr6              75880018 4258 + 121039945 [encoded data, 4281 characters]
i nomLeu3.chr6              C 0 C 0
e colAng1.NW_012115910v1     6764836    0 -   6934359 C

a score=1392.000000
s hg38.chr15_KI270851v1_alt    18242 5 +    263054 AGAAA
s gorGor5.CYUI01000350v1       21442 5 -    142253 AGAAA
i gorGor5.CYUI01000350v1    I 16094 C 0
s nomLeu3.chr6              75884276 5 + 121039945 AGAAA
i nomLeu3.chr6              C 0 I 16049
e colAng1.NW_012115910v1     6764836 0 -   6934359 C

a score=19584.000000
s hg38.chr15_KI270851v1_alt    18247 274 +    263054 GACAAATAGGAAGCTCTTCTATTAGGGCAATGTAGAGCTTGTGCTTTACTTATGTGACAGATATAGATATTTTGAATATTTTAAAATTAGGTATGAT----ATTCTACCAAACACtatatatagtgtttatatatatataacaaaataaacactatatatatattatatataataaaataaacactgtatataccaaacactatatatagtgtt--tatatatataacaaaataaacactatatatattatatataataaac-----------------------------------------------------------------------------------tatatatataccaaacac
s gorGor5.CYUI01000350v1       21447 358 -    142253 GACAAATAGGAAGCTCTTCTATTACGGCAATGTAGAGCTTGTGCTTTACTTATGTGACAGATATAGATATTTTGAATATTTTAAAATTAGGTATGACATTAATTCTACCAAACACtatatatagtgtttatatatatataacaaaataaacactatatatatattatatataataaaataaacac----tataccaaacactatatatagtgtttatatatatataacaaaataaacactatatatattatatataataaaataaacactatatataccaaacactatatatagtgtttatatatatataacaaataaacactatatattatatataataaacactatatatatac-aaacac
i gorGor5.CYUI01000350v1    C 0 C 0
e nomLeu3.chr6              75884281 16049 + 121039945 I
e colAng1.NW_012115910v1     6764836   0 -   6934359 C

a score=2687.000000
s hg38.chr15_KI270851v1_alt    18521 13 +    263054 tatatataatgtt
s gorGor5.CYUI01000350v1       21805 13 -    142253 tatatatagtgtt
i gorGor5.CYUI01000350v1    C 0 C 0
s calJac3.chr10                66010 13 - 132174527 TATACCTAGTGTt
i calJac3.chr10             N 0 I 1
e nomLeu3.chr6              75884281 16049 + 121039945 I
e colAng1.NW_012115910v1     6764836  0 -   6934359 C

a score=177662.000000
s hg38.chr15_KI270851v1_alt    18534 461 +    263054 tatatatatataaaacaaaataacactatataattctattggtataattaatatatatgtaagacaaaataaacactatatatagag------tatatatatatatgtaACAAAATTTTGTGATACCT--------------TGAAATTTAAGGTTGA-------ATATTTGTATACATTCCAAGATAAATCTTGGTGAACATCATAAAATTAATTCTAATATTTTTTGTGCAAGATGATCACTTTCAAACTAGGTTTGACaacagagaccagatgtatctttccaccagaaatacttgtaaaacatagtgaaatttcttaaattcaattttatgatgtgtgacaacaggtaacaaggacagtaattgctgagaggtgggaaataaacaaaaggagtcctctgatgaatgcacgctcagatgcttccttaagggagtttccaggc-acagtgctgaagtggaaccaggtagaactgaagttgaggaaaa
s gorGor5.CYUI01000350v1       21818 461 -    142253 tatatatatataaaacaaaataacactatataattctattggtagaattaatatatatataagacaaaataaacactgtatatagag------tatatatatatataAAACAAAATTTTATGATACCT--------------TGAAATTTAAGGTTGA-------ATATTTGTATACATTCCAAGATAAATCTTGGTGAACATCATAAAATTAATTCTAATATTTTTTGTGCAAGATGATCACTTTCAAACTAGGTTTAACaacagagaccagatgtatctttccaccagaaatacttgtaaaacacagtgaaatttcttaaattcaattttatgatgtgtgacaacaggtaacaaggacagtaattgctgagaggtgggaaataaacaaaaggagtcctctgatgaatgcacgctcagatgcttccttaagggagtttccaggc-acagtgctgaagtggaaccaggtagaactgaagttgaggaaaa
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6              75900330 465 + 121039945 tatatatatataaaacaaaataacactatataattctattggtagaattaatatatatata--ataaaataaacactatatacagagtgtatatatatatatatataAAACAAAATTTTATGATACCT--------------TGAAATTTAAGGTTGA-------ATATTTGTATACATTCCAAGATAAATCTTGGTGAACATCATAAAATTAATTCTAATATTTTTTGTGCGAGATGATCACTTTCAAACTAGGTTTAACaacagagaccagatgtatctttccaccagaaatacttgtaaaacacagtgaaattttttaaattcgattttatgatgtgtgacaacaggtagcaaggacagtaactgctgagagaggggaaataaagaaaaggagtcctctgatgaatgcacgctcagatacttccttaagggagtttccaggc-acaatgctgaagtgaaaccaggtagaattgaagttgaggaaaa
i nomLeu3.chr6              I 16049 C 0
s calJac3.chr10                66024 443 - 132174527 tatatatacataaagta--------------------tttgatataatttatatatat----------------actatatata---------aatatgcacacacacacacacaCTCTACGATGTCTATAAAAATGTCTCCTGGGATTTAGTGTTAACTGTTGCATATCTATGTATATTCCAGGGTAAATATTAGTGGACATCATAAAATAGATTCTAATA-TTTATGTGCAAGATGATCACTTTCAAACTCAGTTTAACaacagaaaccagatatatctttctaccagtaattaccaaaaaacacagtgaaatttcttaaacacgattttaagatgcttgacatagggcaacaaagacagtgattactgagagagaggaaataagcaaaaggagccccgtgattaatgcacactcatatccttccttaagggagaggacaggctgcaTTCCTGCAGTGGGACCCTGTGGATTTAGAATTAATAAAAA
i calJac3.chr10             I 1 I 14258
e colAng1.NW_012115910v1     6764836   0 -   6934359 C

a score=1475.000000
s hg38.chr15_KI270851v1_alt    18995 6 +    263054 agagct
s gorGor5.CYUI01000350v1       22279 6 -    142253 agagct
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6              75900795 6 + 121039945 ggagct
i nomLeu3.chr6              C 0 C 0
e colAng1.NW_012115910v1     6764836 0 -   6934359 C
e calJac3.chr10                66467 14258 - 132174527 I

a score=55655.000000
s hg38.chr15_KI270851v1_alt    19001 139 +    263054 gagactgaccatggacttgtcctggccaatttccggaggctgtgcactgtgtgtctttctgcccctgcac-----aaagccgttttcgtgtacagagccagattgtaattcgtctagttctcatgtcctcacccaaaagcaaat
s gorGor5.CYUI01000350v1       22285 139 -    142253 gagactgaccatggacttgtcctggccaatttccggaggctgtgcactgtgtgtctttctgcccctgcac-----aaagccgttttcgtgtacagagccagattgtaattcatctagttcttatgtcctcacccaaaagcaaat
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6              75900801 138 + 121039945 gagactgaccatggacttgtcctggccagtttccggaggctgtgcactgcgtgtctttctgcccctgcac-----aaagcc-ttttcgtgtacagggccagattgtaattcatctggttctcatgtcctcacccaaaaggatat
i nomLeu3.chr6              C 0 C 0
s calJac3.chr10                80725 142 - 132174527 gacactgaccatgacctggtcctggctgg-ttacagaggctgtgcactgcttgtctttgtgcctctgcacttttaaaaacc-ttcttatgtacagggcccacttttaatgcgtttagatgtgaagttctcaccccaaagcaaac
i calJac3.chr10             I 14258 C 0
e colAng1.NW_012115910v1     6764836   0 -   6934359 C

a score=22023.000000
s hg38.chr15_KI270851v1_alt    19140 34 +    263054 atgaaatgcatgt-aacgtttgtgtttgcttatta
s gorGor5.CYUI01000350v1       22424 34 -    142253 atgaaatgcatgt-aacgtttgtgtttgcctatta
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6              75900939 34 + 121039945 aggaaatgcatgt-aacgtttgtgtttgcttttta
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012115910v1     6764836 35 -   6934359 atgaaatacatgtaaacatgtgtgtttgcttattc
i colAng1.NW_012115910v1    C 0 C 0
s calJac3.chr10                80867 34 - 132174527 atggaatgcacgt-aatgtgtgtgtttgctaatca
i calJac3.chr10             C 0 N 0

a score=805923.000000
s hg38.chr15_KI270851v1_alt    19174 1117 +    263054 cacatgagagcctgcctgtcatgtgactatcaataggtccttctatagcctgctgagtgtgtacgcttggccaatccattcgcatgaattcatttcttgtctttccctctcttgaagtgcctgctcacagtctctgtgggaggctttgctttccagcctgttaagatggccgtcctgcagctccaaccctttttcagaaataaaatctcctttctaaattgatagattgggtgattcttccattgaAagcacaagctggtgcgaagagttacatggtaattccataaatgcctggaggagaagcaggga-aagggtagggtaagaa---ct---gggggccacacacctcacacttttatggaatttccctccaaaagcttctgggttctcaagacgagaattcaaacagatgccctcatggctctgtcatcaggagaactattttctgataaatatgcccagaactttctccagacagaccctacaaagaaaaaatacttttcaagatctttattctatgtgagaggaagggattcttttccatcccagacagcttcatcttagccttcccgtgtcatgaaaagggGTATAATTAAT-AAACAACTGGGGTCAGATTCAAGACAATAATCTGTGTATGCTACAGCCAGGAGGTGGAGTAGAGGACGGAGGAAAATCAGCTGTATGACTGGAGACTCCTTGTAAAGGGTACAGCCTAAAGAAAGCACAGCAAGAAATCATT---------------GAACATATACTGCTCCcctgcccaccatatcacctgct---cactaggattaagatggattaaagagaaaagttttgcaaggcacatgctctgtctaaggact---agaacttagggaaaccaaaggcactgggagagaacaagtcaagtacagtgaagtgatttaaagcctctgaaagcaacagcttcagGACCAAGATCACGGCCCCTCCCTCAATGACCTTAGATTTTCCTCTCGTGGGGCGTCTGCAGGGCTCTCAGGTGAGAATTGGCAAAGACAATGTGAAGGCACTTTCCAAATCTCCAATAGTACTGAGCTTGCTTTAGCTCTGCTTGGAAAAAACAAACAAC-------AAAACAACAAACATAAGCAGGACTAGGGTCAGAGTCGGA
s gorGor5.CYUI01000350v1       22458 1114 -    142253 cac--gagagcctgcctgtcatgtgactatcaataggtccttctatagcctgttgagtgtgtacgcttggccaatccattcgcgtgaattcatttcttgtctttccctctcttgaagtgcctgctcacagtctctgtgggaggctttgctttccagcctgttaagatggccgtcctgcagctccaaccctttttcagaaataaaatctcctttctaaattgatagattgggtgattcttccattgaAagcacaagctggtgcgaacagttacatggtaattccataaatgcctggaggagaagcaggga-aagggcagggtaagaa---ct---gggggccacacacctcacacttttatgaaatttccctccaaaagcttctgggttctcaagacgagaattcaaacagatgccctcatggctctgtcatcaggagaactattttctgataaatatgcccagaactttctccagacagaccctacaaagaaaaaatacttttcaagatctttattctatgtgagaggaagggattcttttccatcccagacagcttcatcttagccttcccgtgtcatgaaaagggGTATAATTAAT-AAACAACTGGGGTCAGATTCAAGACAATAATCTGTGTATGCTGCAGCCAGGAGGTGGAGTAGAGGATGGAGGAAAATCAGCTGTATGGCTGGAGACTCCTTGTAAAGGGTACAGCCTAAAGAAAGCACAGCAAGAAATCATT---------------GAACATATACTGCTCCCCTGCccaccatatcacctgct---cactaggattaagatggattaaagagaaaagttttgcaaggcacatgctctgtctaaggact---agaacttagggaaaccaaaggcgctgggagagaacaagtcaagtacagtgaagtgatttaaagcctctgaaagcaacagcttcagGACCAAGATCACG-CCCCTCCCTCAGTGACCTTAGATTTTCCTCTCATGGGGCGTCTGCAGGGCTCTCAGGTGAGAATTGGCAAAGACAATGTGAAGGCACTTTCTAAATCTCCAATAGTACTGAGCTTGCTTTAGCTCTGCTTGGAAAAAACAAACAAC-------AAAACAACAAACATAAGCAGGACTAGGGTCAGAGTCGGA
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6              75900973 1119 + 121039945 cacatgaaagcctgcctgtcatgtaattatcaataggtccttctatagcctgctgagggtgtacacttggccagtccattcgcatgaattcatttcttgtctttccctctcttgaagtgcgtg-tcacactctctgtgggaggctttgctttccagcctgttaagatggccgtcctgcagctccaaccctttttcagaaataaaatctcctttctaaattgatagattgggtgattcttccattgaAagcacaagctggtgcgaacagttatatggtaaatccataaatgcctggaggacaagcgggga-aagggtagggtaagaa---ct---gggggccacacacctcatacttttatggaatttccctccaaaagcttctgggttctcaagatgagaattcaaacagattccctcatggctctgtcatcaggagaactattttctgataaatatgcccagaactttctccagacagactctacaaagaaaaaatgcttttcaagatctgtattctatgtgagaggaaggggttcttttccatcccacacagcttcatcttagccttcctgtgtcatgaaaagggGTATAATTAAT-AAACAACTAGGGTCAGATTCAAGACAATAATCTGTGTATGCTGCAGCCAGGAGGTGGAGTAGAGGACAGAGGAAGATCAGCTGTATGACTGGAGACTCCTTGTAAAGGGTACAGCCTAGAGAAAGCACAGCAAGAAATCATT---------------GAACATATACTGCTCCcctgcccaccacatcacctgctcaccactagaatgaattcggattaaagagaaaagttttgcaaggcacatgctctgtctaaggact---agaacttagggaaaccaaaggcactgggagagaacaagtcaagtatagtgaagtgatttaaagcgtctgaaaccaacagcttcagGATCAAGATCACAGCCCCTCCCTCAATGGCCTTAGATTTTCCTGTCATGGGGCATCTGCAGGGTTCTCCGGTGAGAATTGGCAAAGACAATGTGAAGGCACTTTCCAAGTCTCCAATAGTACTGAACTTGCTTTAGCTCTGCTTGGAAaaaaacaaaaca-------acaacaacaaacataagcaGGACTAGGGTCAGAGTTGGA
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012115910v1     6764871 1125 -   6934359 tgcctgagagcctgcctacca------tatccatagctccttctatagcctgctgagtatgtgcacttggccaatacattcacatgaattcatttctcatctttccctctgttgaagtgcctgctcactgtctctgtgggaggctttgctttccagcctgttaacatggccgtcctgcagttttacccatttatcagaaataaggtctcttttctaaattcataaattgggtgattcttcCATGgaaagcacaagctggtgtgaacagttacatggtaattccacaaatgcctagaggacaaggtgggc-agggatagggtaagaaatctt---gggggccacacaccccacacttttatggaatttccctccagaaacttctgggttctcaagatgagaatccaaacagattccctcatggctctgatatcaggagaactgttctctgataaatatgtccagaactttctccagatagaccctaaggagaaaaaattcttttcaagatctttattctgtgtgagatgaagggattcttttccatctctgacagcttcatctgagccttcctgtttcGTGAAAAGAGGTATACTTAATAAAACAACTGGGGTCAGATTGAAGACAATAATCTGTGTATGCTACAGCCATGACGGGGAGTAGAAGATGAAGGAAAATCAGCTGTACCAGTAGAGACTCcttgtaaagagcacagcctagagaaagcacagtaagaaatcattggaactcaatttcaagaacatttactgctcccctgcccaccacatcacctcctcagcactaagattaatatggatgaaagag--aagtgttgcaaagcacatgc----gctaaggact---agaacttagggaaaccaaaagccctgggagagaacaagtcaaggacagggaagtgatttaaagcctctgagcccaatggcttcagGACCAAGATCATGGCCCCTCCCTCAGCTGCCTTAGATTTTCCTCTCATGGGGCATCTGCAGGGTTCTCAGGTGAGAATCAGTAAAGACAATGTGAAGGCACTTTCCAAATCTCCAACAGTACTGAGCCTACTTTAGTTCTGCTTGAAAAAACAAAACAGC---------AACAACAAACATAAGCAGGACTAGGGTCAGAGTCGGA
i colAng1.NW_012115910v1    C 0 C 0
s calJac3.chr10               251342 1125 - 132174527 cacatgagagcctgcccGCCAcgtgaatatccacagcgcctcctacagcctgctgagtgtggacac-tggtcaatccattcatatgagttcatttctcatctttccctctgttgaagtgcctgctcacagtctctgtgggaggctttgcctcccaacctgctaacaaggccctcctg-aacttcaaccctttctcagaaataaagtttcctttataagtttataaattgggtgattcttcagctgaAagcacaagctggtgggaacagttacatgttagttctgtaaatgtctggaggacaggtggggacagggatagggtaagaaatcctgagggggggcacacatcccacactttcatggaatttccctccagatacttctggattcacaagac-----tccaaacagattccctcatggctctgtcaccagcagaacttttctctgaaaa----gcccagaactttctccagacagatcctacagagaaaaaatacttttcgacatctctattctatgtgaggggaagggattcttttccttcccagaccgtttcatcttagccttcctgtgtcatgaaaaaggGTGTAATTAATAAAGCAACTGGGGTCAGATTCAGGAGAATAATCTGTGGATGTCGCAGCCAAGAGGGGGAGTAGAGGATGGAGGAAGATCGGCTGAACCACTGGAGACCCctcgtaaagggcacagcatagagaaggaacagcaagaaaacattgaaattcaatttccagaacgtaccctgctcccctgcccatcatatcacctcctcaccagtacgattcatctggattaaagagacacgtgtggcga---------------tgaagactctgagaatttagggaaaccaaaggcaacgggagacaacaggtcaaggacagcgaagggatttaaaccctctgagaccaacagcttcagGACCAAGGTCACG-GCCCTCCCTCGATGGCCTTAGATTTGCCTCTCGTGGGGCATCTGCAGGGTTCCCGGGTGAGAAG-GGCAAAAACAAGGTGAAGACAGTTTCCACCTCTCCAGTAGTACTGAGCTTGCCTCGGCTCTGTTTGGAAAAACAAAACAGTGACAACAACAACCACAAATATAACCAGGAATAAGCTCAGTTTTGGA
i calJac3.chr10             N 0 I 308

a score=169089.000000
s hg38.chr15_KI270851v1_alt    20291 236 +    263054 AGCACTTTTCATTGGCAAGACACTAGGAAGGAGGGCAAATTTGAGGTTTGTTACTGTGCAAATATTCCACTGTGAGTGTG---GGGGCAGGGGCTTTGAGAAACAGGGTCTGTGCAT-AAAGTTCTAATCTGATATAATCTTCAACCACAGAATCCT-------AAAAAAAAGAGGCTGCCC-CAAAGTCCCCATCAGTTCCTGCACTTGCCATGTGTCTGGA-GGTATCAGTGCATATGGAGCTCCAG
s gorGor5.CYUI01000350v1       23572 236 -    142253 AGCACTTTTCATTGGCAAGACACTAGGAAGGAGGGCAAATTTGAGGTTTGTTACTGTGCAAATATTCCACTGTGAGTGTG---GGGGCAAGGGCTTTGAGAAACAGGGTCTGTGCAT-AAAGTTCTAATCTGATATAATCTTCAACCACAGAATCCT-------AAAAAAAAGAGGCTGCCC-CAAAGTCCCCATCAGTTCCTGCACTTGCCATGTGTCTGGA-GGTATCAGTGCATATGGAGCTCCAG
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6              75902092 235 + 121039945 AGCACTTTTCATTGGCAAGACACTAGGGAGGAGGGCAAATTTGAAGTTTGTTACTGTGCAAATATTCCACTGTGAGTGTG---GGGGCAGGGGCTTTGAGAAACAGGGTCTGTGCATAAAAGTTCTAATCTGATATAATCTTCAACCACAGAATCCT---------AAAAAAGAGGCTGCCC-CAAAGTCCCCATCAGTTCCTGCACTTGCCATGTGTCTGGA-GGTATCAGTGCATATGGAGCTCCAG
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012115910v1     6765996 236 -   6934359 AGCACTTTTCATTGGCAAGACACTAGGAAGGAGGGCAAATTTGAGGTTTGTTACTGTGCAGATATTCCACTGTGAGTGTG---AGGGTGGGGGCTTTGAGACACATGGTCTGTGAGT-AAAGTTCTAATCTGATAGAATCTTCAACCACAGGATCCT-------AAAAAATAGAGGCTGCGC-CAAAGTCCCCATCACTTCCTGCACTTGCCATGCGTCTGGA-CGTATCAGTGCATATGGAGCTTCAG
i colAng1.NW_012115910v1    C 0 C 0
s calJac3.chr10               252775 243 - 132174527 AGCACTTTTCATCGGCAGCAC-CTAGAAAGGAGGG--AATTTGAGGCTCGTTACTGCCCAAATATGCCACCGTGAGTGTGTCTGAGGT--GGGCTTTGAAACATAGGGTCCCTGATT-AAAGTTAAAATCTGATGTGATTTTCTATCAAAGAATCCTAAAAAAAAAAAAAAAAAAAGTGCCCGCAACATCCCCTTCAGTTCCTGGACTTGCCATATGTCTGGACCGTATCAGTGCACCTGGAGCTCCAG
i calJac3.chr10             I 308 I 134

a score=12466.000000
s hg38.chr15_KI270851v1_alt    20527 27 +    263054 GGGAGGGGCCCCCTGGTGGCTTTAGTG
s gorGor5.CYUI01000350v1       23808 27 -    142253 GGGAGGGGCCCCCTGGTGGCTTTAGTG
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6              75902327 27 + 121039945 GGGAAGGGCTCCCTGGTGGCTTTAGTG
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012115910v1     6766232 26 -   6934359 GGAAGAGGCTCCCTGGT-GCTTTAGTG
i colAng1.NW_012115910v1    C 0 C 0
e calJac3.chr10               253018 134 - 132174527 I

a score=117051.000000
s hg38.chr15_KI270851v1_alt    20554 161 +    263054 ATTCCTTGCTTGCTGCGCTGAAGTATCCCAATAGATTG--CTGGGTTTTCTAAGGCCTAT-TCCTATTGTAAGAGGTGGTGTGAGAAGCAATTGCTGTCACTGAGGGAACATTCTGAGCCAGGACACATCCACTTCATACTGGGCTTGAGATGCTTGGAGAAAA
s gorGor5.CYUI01000350v1       23835 163 -    142253 ATTCCTTGCTTGCTGCGCTAAAGTATCCCAATAGAGTGTGCTGGGTTTTCTAAGGCCTAT-TCCTATTGTAAGAGGTGGTGTGAGAAGCAATTGCTGTCACTGAGGGAACATTCTGAGCCAGGACACGTCCACTTCATTCTGGGCTTGAGATGCTTGGAGAAAA
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6              75902354 163 + 121039945 ATTCCTTGCTTGCTGTGCTAAAGTATCCCAATAGATTGTGCTGGGTTTTCTAAGGCCTAT-TCCTATTGTAAGAGGTGGTGTGAGAAGCAATTGCTGTCACTGAGGGAACATTCTGAGCCAGGGCACGGCCACTTCATACTGGGCTTGAGATGCTTGGAGAAAA
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012115910v1     6766258 163 -   6934359 ATTCCTCGCTTGCTGTGCTACAGTATCCCAGTAGATCATGTTGAGTTTTCTAAGGCCTAT-TCCTATGGTAAGAGGTGGTGTGAGAAGCAATTGCTGTCACTGAGGGAACATTCTGAGCCAGGCCACGGCCACTTGATACTGGGCTTGAGATGCTTGGAGAAAA
i colAng1.NW_012115910v1    C 0 C 0
s calJac3.chr10               253152 160 - 132174527 ATTCCTTGCTTGCTGTGCTAAGGTGACCCTGTGGATTATGTTGGGTTTTCTAAAGTGGATGTCCTATTTTAAGATG-GGTGTGAGAATCA---GTTGTTACAGAAGGAGCATTCTGAGCCAGGGCACAGCCGCTTCAGACTGGGCTTCAGACGCTGGGGGAGAA
i calJac3.chr10             I 134 N 0

a score=7008.000000
s hg38.chr15_KI270851v1_alt    20715 14 +    263054 ATGCTCTGTGAGCC
s gorGor5.CYUI01000350v1       23998 14 -    142253 ATGCTCTGTGAGCC
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6              75902517 14 + 121039945 ATGTTCTGTGAGGC
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012115910v1     6766421 14 -   6934359 ATGCTCTGTGAGCC
i colAng1.NW_012115910v1    C 0 C 0

a score=2608010.000000
s hg38.chr15_KI270851v1_alt     20729 709 +    263054 agctgggattacaagtgtgtggtgtcacacccggctcactttgtatttttagtagagatggggtttcaccatgctggccaggctggtttcgaactcctgacctcaggtgatccacccgcctctgcatcccaatgcgctgggattacaggcgtgagccatcaggcctggccTGGAATAGTTAATATTTGCTATGTAAACCTCCACGTGATGCAAATATGAAACAAATGCCCACGTGCAATGTCTGTCCCATAATCATTCTGTGAACACATGAATAGCACTGAGTATGCACAGGGCTTGATTCCTTCTTGACCCTGGGTCTGGTTTCCTTTAAGGTAACCTTGAGTCAATGAGCCATTAGTAGAGGGTGGTATTCTACAGCCGAGTAGGCAGAAAAATAGACTGATCTTCTTTTGAGTTACAAATAAATACACTTTGAAATAGTAGAAATTCTTATAAATGAGCCGTAATCATATGAAAAAA-TGATGTGGTAGAACTTCTTTGGTGTCTGTGGCTGTTAAAGACAACGTGATTTTTACTAAAAA-CCAAGATAATTTTAAAAAATCTG-TGAGGGATGAATATTCTTCGCCATTCACCAAGTTTGTAATCGGACGTCTTCCATAAGCTGCCCTTGAAAAAGTCACCAGTACAATTTTGTCTTTGTCAAAGTTGATTGCAGTAGCATGCTATTTGCTTATTCATATCTAGAGTC
s gorGor5.CYUI01000350v1        24012 711 -    142253 agctgggattacaagtgtgtggtgtcacacccggctaactttgtatttttagtagagatggggtttcaccatgctggccaggctggtttcgaactcctgacctcaggtgatccacccgcctctgcatcccagtgtgctgggattacaggcgtgagccatcaggcctggtcTGGAATAGTTAATATTTGCTGTGTAAACCTCCACGTGATGCAAATATAAAACAAATGCCCACGTGCAATGTCTGTCCCATAATCATTCTGTGAACACATGAATAGCACTGAGTATGCACAGGGCTTGATTCCTTCTTGACGCTGGGTCTGGTTTCCTTTAAGGTAACCTGGAGTCAATGAGCCATTAGTAGAGGGTGGTATTCTACAACCGAGTAGGCAGAAAAATAGACTGATCTTCTTTTGAGTTACAAATAAATACACTTTGAAATAGTAGAAATTCTTATAAATGAGCCATAATCATATGAAAAAAATGATGTGGTGGAACTTCTTTGGTGTCTGTGGCTGTTAAAGACAACGTGATTTTTACTAAAAAACCAAGATAATTTTAAAAAATCTG-TGAGGGATGAATATTCTTCGCCATTCACCAAGTTTGTAATCGGACGTCTTCCATAAGCCGCCCTTGAAAAAGTCACTAGTACAATTTTGTCTTTGTCAAAGTTGATTGCAGTAGCATGCTATTTGCTTATTCATATCTAGAGTC
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75902531 703 + 121039945 agctgggattacaagcgtgtggtgtcacacccggctaattttgtatttttagtagagatggggtttcaccatgctggccaggctggtttcaaactcctgacctcatgtgatccacccgcctctgcctcccaatgtgctgggattacaggcgtgagccatcaggcctggccTGGAATAGTTAATATTTGCTATGTAAACCTCCACATGATGCAAATATAGAACAAATGCCCACGTGCAATGTATGTCCCATAATCATTCTGTGAACACATGAATAGCACTGAGTATGCACAGGGCTTGATTCCTTCCTGACC-----TCTGGTTTCCTTTAAGGTAACCTTGAGTCAATGAGCCATTAGTTGAGGGTGGTATTCTACAACCGAGTAGGCAGAAAAATAGACCGATCTTCTTTTGAGTTATAAATGAAAACACTTCGAAATAGTAGAAATTCTTTTAAATGAGCCATAATTATATGAAAAAA-TGATGTGGTAGAACTTCTTTGGTGTCTGTGGCTGTTAAAGACAACATGATTTTTACTAAAAA-CCCAGATAATTTAAAAAAATCTG-TGACGGATGTATATTCTTCGCCATTCACCAAGTTTGTAATCGGACGTCTTCCACAAGCTGCCCTTGAAAAA-CCACCAGTACAATTTTGTCTTTGTCAAAGTTGATTCCAGTAGCATGCTATTTGCTTATTCATATCTAGAGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr15             108337904 697 + 111343173 agctgggattacaagcatgtggcgtcacacctggctaattttgtatttttagtagaggcggggtttcaccatgttggccaggctggtctcagattcctgacctcaggtgatccacctgcctctacctcccaatgtactgggattacaggcataagccaccacacctggccTGGAAT-ATTAACATTTGCTATGTAAGCCTCCACGTGATGCAAATGTAGAACAAATGCTCACATGCAATGTATGTCCCGTAATCATTCTGTGAACACATGAATAGCACTGAGTATGCACAGGGCTTGGTTCCTTCCTGACCCTGGGTCTGGAATCCTTTAAGATAACCTTGAGTCAACAAGCCATTAGTAGAGGGTGGTATTCTACAACTGACTAGGCA------------GATCTTCTTTTGAGTTATAAATAAAAACACTTTGAAATAGTAGAAATTCTTTTAAACGAGCCATAATTATATGAAAAAA-TAATGGGGAAGAACTTCTTTGGTGTCTGTGGCTGTTAAAGACAACATGATTTTTACTAAAAA-CTAAGATAATTTTTAAAAATCCGTTGAGGAATGAATATTCTTAGCCATTTACCAAGTTTGTAATCAGACGTCTTCCATAAGCTACTGTTGAAAAAGTCACCAGTGCAATTTTGTCTTTGTCAAAGTTGATTGCAGTAGCACACTATTTGTTTATTCATATCTAGAGTC
i rheMac8.chr15             N 0 C 0
s macFas5.chr15             106249166 709 + 112612857 agctgggattacaagcatgtggcgtcacacctggctaattttgtatttttagtagaggcggggtttcaccatgttggccaggctggtctcaaattcctgacctcaggtgatccacctgcctctacctcccaatgtactgggattacaggcatgagccaccacacctggccTGGAAT-ATTAACATTTGCTATGTAAGCCTCCACGTGATGCAAATGTAGAACAAATGCTCACATGCAATGTATGTCCCGTAATCATTCTGTGAACACATGAATAGCACTGAGTATGCACAGGGCTTGGTTCCTTCCTGACCCTGGGTCTGGAATCCTTTGAGATAACCTTGAGTCAACAAGCCATTAGTAGAGGGTGGTATTCTACAACTGACTAGGCAGAAAAATAGGCTGATCTTCTTTTGAGTTATAAATAAAAACACTTTGAAATAGTAGAAATTCTTTTAAACGAGCCATAATTATATGAAAAAA-TAATGGGGAAGAACTTCTTTGGTGTCTGTGGCTGTTAAAGACAACATGATTTTTACTAAAAA-CTAAGATAATTTTTAAAAATCCGTTGAGGAATGAATATTCTTAGCCATTTACCAAGTTTGTAATCAGACGTCTTCCATAAGCTACTGTTGAAAAAGTCACCAGTGCAATTTTGTCTTTGTCAAAGTTGATTGCAGTAGCACGCTATTTGTTTATTCATATCTAGAGTC
i macFas5.chr15             N 0 I 331
s macNem1.NW_012012133v1     22629446 709 +  28977278 agctgggattacaagcatgtggcgtcacacctggctaattttgtatttttagtagaggcggggtttcaccatgttggccagggtggtctcaaattcctgacctcaggtgatccacctgcctctacctcccaatgtactgggattacaggcatgagccaccacacctggccTGGAAT-ATTAACATTTGCTATGTAAGCCTCCACGTGATGCAAATGTAGAACAAATGCTCACATGCAATGTATGTCCCGTAATCATTCTGTGAACACATGAATAGCACTGAGTATGCACAGGGCTTGGTTCCTTCCTGACCCTGGGTCTGGAATCCTTTAAGATAACCTTGAGTCAACAAGCCATTAGTAGAGGGTGGTATTCTACAACTGACTAGGCAGAAAAATAGGCTGATCTTCTTTTGAGTTATAAATAAAAACACTTTGAAATAGTAGAAATTCTTTTAAACGAGCCATAATTATATGAAAAAA-TAATGGGGAAGAACTTCTTTGGTGTCTGTGGCTGTTAAAGACAACATGATTTTTACTAAAAA-CTAAGATAATTTTTAAAAATCCGTTGAGGAATGAATATTCTTAGCCATTTACCAAGTTTGTAATCAGACGTCTTCCATAAGCTACTGTTGAAAAAGTCACCAGTGCAATTTTGTCTTTGTCAAAGTTGATTGCAGTAGCACGCTATTTGTTTATTCATATCTAGAGTC
i macNem1.NW_012012133v1    N 0 C 0
s cerAty1.NW_012000030v1      1898228 708 +   8072957 agctgggattacaagcatgtggcgtcacacctggct-attttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaattcctgacctcaggtgatccacctgcctctacctcccaatgtactgggattacaggcatgagccaccacacctggccTGGAAT-ATTAACATTGGCTATGTAAGCCTCCACGTGATGCAAATGTAGAACAAATGCTCACATGCAATGTATGTCCCATAATCATTCTGTGAACACATGAATAGCACTGAGTATGCACAGGGCTTGGTTCCTTCCTGACCCTGGGTCTGGAATCCTTTAAGATAACCTTGAGTCAACAAGCCATTAGTAGAGGGTGGTATTCTACAACTGACTAGGCAGAAAAATAGGGTAATCTTCTTTTGAGTTATAAATAAAAACACTTTGAAATAGTAGAAATTCTTTTAAACGAGCCATAATTATATGAAAAAA-TAATGGGGGAGAACTTCTTTGGTGTCTGTGGCTGTTAAAGACAACATGATTTTTACTAAAAA-CTAAGATAATTTTTAAAAATCCGTTGAGGAATGAATATTCTTAGCCATTTACCAAGTTTGTAATCAGACGTCTTCCATAAGCTGCTGTTGAAAAAGTCACCAGTGCAATTTTGTCTTTGTCAAAGTTGATTGCAGTAGCACGCTATTTGTTTATTCATATCTAGAGTC
i cerAty1.NW_012000030v1    N 0 C 0
s chlSab2.chr12             102616302 707 + 108555830 agctgggattacaagcatgtggtgtcacacctggctaattttgtatttttagtagagacggggtttcaccatgttggccagggtggtctcaaattcctgacctcaggtcatccacctgcctctacctcccaatgtactgggattacaggcatgagccaccacacctggccTGGAAT-ATTAAC--TGGCTATGTAAGCCTCCACGTGATGCAAATGTAGAACAAATGCTCACATGCAATATATGTCCCGTAATCATTCTGTGAACACATGAATAGCACTGAGTATGCACAGGGCTTGGTTCCTTCCTGACCCTGGGTCTGGAATCCTTTAAGATAACCTTGAGTCAACAAGCCATTAGTAGAGGGTGGTATACTACAACTGACTAGGCAGAAAAATAGGCTAATCTTCTTTTGAGTTATAAATAAAAACACTTTGAAATAGTAGAAATTCTTTTAAACGAGCCATAATTATATGAAAAAA-TAATGGGGAAGAACTTCTTTGGTGTCCGTGGCTGTTAAAGACAACATGATTTTTACTAAAAA-CTAAGATAATTTTTAAAAATCCATTGAGGAATGAATATTCTTAGCCATTTACCAAGTTTGTAATCAGATGTCTTCCATAAGCTACTGTTGAAAAAGTCACCAGTGCAATTTTGTCTTTGTCAAAGTTGATTGCAGTAGCACGCTATTTGTTTATTCATATCTAGAGTC
i chlSab2.chr12             N 0 C 0
s manLeu1.NW_012104154v1      2111197 709 +   2144893 agctgggattacaagcatgtggcgtcacacctggctaattttgtatttttagtagagacggggtttcaccatgttggccaggctggtctcaaattcctgacctcaggtgatccacctgcctctacctcccaaagtactgggattacaggcatgagctaccacacctggccTGGAAT-ATTAACATTTGCTATGTAAGCCTCCACGTGATGCAAATGTAGAACAAATGCTCACATGCAATGTATGTCCTGTAATCATTCTGTGAACACATGAATAGCACTGAGTATGCACAGGGCTTGGTTCCTTCCTGACCCTGGGTCTGGAATCCTTTAAGATAACCTTGAGTCAACAAGCCATTAGTAGAGGGTGGTATTCTACAACTGACTAGGCAGAAAAATAGGGAAATCTTCTTTTGAGTTATAAATAAAAACACTTTGAAATAGTAGAAATTCTTTTAAACGAGCCATAATTATATGAAAAAA-TAATGGGGGAGAACTTCTTTGGTGTCTGTGGCTGTTAAAGACAACATGATTTTTACTAAAAA-CTAAGATAATTTTTAAAAATCCGTTGAGGAATGAATATTCTTAGCCATTTACCAAGTTTGTAATCAGACGTCTTCCATAAGCTGCTGTTGAAAAAGTCACCAGTGCAATTTTGTCTTTGTCAAAGTTGATTGCAGTAGCACGCTATTTGTTTATTCATATCTAGAGTC
i manLeu1.NW_012104154v1    N 0 C 0
s colAng1.NW_012115910v1      6766435 693 -   6934359 agctgggattacaagcgcgtagcatcacacccagttaattttgtatttttagtagagatggggtttcaccatgttggccaggctggtttcaaactcctgacctcaggtgatccacccacctctgcctcccagtgtgctgggattacaggcgtgagccatcaggcctggccTGGAATAATTAATATTTGCTATGTAAACCTCCACGTGATGCAAATATAGAACAAACGCCCACATGCAGTGTGTGTCCCATCATCATTCTGTGAACACATGAATAGCGCTGGGTATGCACAGGGCTTGGTTCCTTCCTGACCCTGGGTCTAGTTTCCTTTAAGGTAACCTTGAATCAATGAGCCATTAGTTGAGGGTGGTATTCTGCAACCAAGTAGGCAGAAAAATAGACTGATCTTCTTTTGAGTTACAAATAAAAACACTTTGACATAGTAGAAATTCTTTTAAATGAGTCATAATTATATGATAAAA-TGATGGGACAGAACTTCTTTGGTGTCTGTGGCTGTTAAAGACAACATG-TTTTTACTAAAAA-TTAAGATAA--TTTAAAAAATCTGTGAGGGATGAATATTCTT------------TGTTTGTAATGAGATATCTTCAATAAGTTGCCCTTGAAAAAGTCACTAGTACAATTTTGTCTTTGTCAAAGTTGATTCCAGTAGCATGCTGTTTGCTTATTCATATC--GAGTC
i colAng1.NW_012115910v1    C 0 C 0

a score=4095.000000
s hg38.chr15_KI270851v1_alt     21438 1 +    263054 A
s gorGor5.CYUI01000350v1        24723 1 -    142253 A
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75903234 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr15             108338601 1 + 111343173 A
i rheMac8.chr15             C 0 I 332
s macFas5.chr15             106250206 1 + 112612857 A
i macFas5.chr15             I 331 I 1
s macNem1.NW_012012133v1     22630155 1 +  28977278 A
i macNem1.NW_012012133v1    C 0 I 333
s cerAty1.NW_012000030v1      1898936 1 +   8072957 A
i cerAty1.NW_012000030v1    C 0 I 328
s chlSab2.chr12             102617009 1 + 108555830 A
i chlSab2.chr12             C 0 I 324
s manLeu1.NW_012104154v1      2111906 1 +   2144893 A
i manLeu1.NW_012104154v1    C 0 I 333
s colAng1.NW_012115910v1      6767128 1 -   6934359 A
i colAng1.NW_012115910v1    C 0 I 7

a score=-155.000000
s hg38.chr15_KI270851v1_alt     21439 1 +    263054 A
s gorGor5.CYUI01000350v1        24724 1 -    142253 A
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75903235 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
e colAng1.NW_012115910v1      6767129 7 -   6934359 I
e manLeu1.NW_012104154v1      2111907 333 +   2144893 I
e cerAty1.NW_012000030v1      1898937 328 +   8072957 I
e macNem1.NW_012012133v1     22630156 333 +  28977278 I
e rheMac8.chr15             108338602 332 + 111343173 I
e chlSab2.chr12             102617010 324 + 108555830 I
e macFas5.chr15             106250207 1 + 112612857 I

a score=1918828.000000
s hg38.chr15_KI270851v1_alt     21440 515 +    263054 AATAAAGTAGCAATTCCCAAAGTGCAACAGAAGCTCTTCTAATTTC-AACATGAAAATTACTGAAGTATTTGTTTAAACTGATGTCTTCTATTGTTTTCCTTTTCCATCTTCAAAGAAGACCCAGGGCTGAAGCCAGCAGCCCTGCCTGTGCCCTGCCTGCACCCTGCCCTTCCTCATGCCCAAGGCT-GACAATGCCTTTGTTTCCCAGCATCTATGTTATGTTGAGGTATTTCTATGCATATAATACCTTGTTCAGAAGCTTTTGAATTCTTTTCTATGAAAATTTCCTGGTTTTACCTTAATAATAAAAATAGTAACATGAACACCTCAAGTCTGTTGTAAGCCTCAATTAGGATAAGGTGGTCCTAGGGAAATGGAGGCTT----TAGAGAAATGTGCGTATGGGTAATGTAGTCACCATCTGGGAcagtgcttctcaaagtgaggtccttgcatcgacagcatctacatcatctagaaat-aggttagacacagaaaccaggaactccgggggaagg
s gorGor5.CYUI01000350v1        24725 514 -    142253 AATAAAGTAGCAATTCCCAAAGTGCAACAGAAGCTCTTCTAATTTC-AACATGAAAATTACTGAAGCATTTGTTTAAACTGATGTCTTCTATTGTTTTCCTTTTCCATCTTCAAAGAAGACCCAGGGCTGAAGCCAGCAGCCCTGCCTGTGCCCTGCCTGCACCCTGGCCTTCCTCATGCCCAAGGCT-GACAATGCCTTTGTTTCCCAGCATCTATGTTACGTTGAGGTATTTCTATGCATATAATACCTTGTTCAGAAG-TTTTGAATTCTTTTCTATGAAAATTTCCTGGTTTTACCTTAATAATAAAAATAGTAACATGAACACCTCAAGTCTGTTGTAAGCCTCAATTAGGATAAGGTGGTCCGAGGGAAATGGAGGCTT----TAGAGAAATGTGCGTATGGGTAATGTAGTCACCATCTGGGGcagtgcttctcaaggtgaggtccttgcatcgacagcatctacatcatctagaaat-acgttagacacagaaaccaggaactccgggggaagg
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75903236 520 + 121039945 AAGAAAGTAGCAATTCCCAAAGTGCAGCAGAAGCCCTTCTAATTCCAAACATGAAAATTACTGAAGTATTTGTTTAAACTGGTGTCTTCTATTGTTTTCCTTTTCCATCTTCAAAGAAGACCCGGGGCTGAAGCCGGCAGCCCTGCCTGCGCCCTGCCTGCACTCTGCCCTTCCTCATGCCCAAGGCT-GACAATGCCTTTGTTTCCCAGCACCTATGTTATGTTGAGGTATTTCTAGGCATATAAGACCTTATTCAGAAGCTTCTGCATTCTTTTCTGTGAAAATTTCCTGGTTTTACCGTAATAATAACAATGGTAACATGAACACCTCAAGTCTGCTGTAAGCCTCGATTAGGATAAGGTGGTCCTAGGGAAACGGAGGCTTAATCTAGAGAAATGTGGGCATGGGTAATGTAGTCATTATCTGGGGcagtgcttctcaaagtgaggtccttgcatcagcagcatctacatcatctggaaat-gggtcagacacagaaACCAAGAACTCCGGGGGAAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr15             108338934 520 + 111343173 AATAAAGTAGCAATTCCCAAAGTGCAACAGAAGCTCTTCTAATTTCAAACATGAAAATTACTGAAGTGTTTGTTTCAGCTGGTGCCTTCTGTTGTTTTCCTTTTCCATCTTCAAAGAAGACCTGGGACGGGAGACAGCAGCCCTGCCTGTGCCCTGCCTCCACCCTGCCCTTCCTCATGCCCAAAGAC-GACAATGCCTTTGTTTCTCACCATCTATGTTATGCTGAGGTATTTCTATGCATATAATACCTCGTTCTGTTGCTTTTGAATTTTTTTCTATGAAAATTTCCTGGTTTTACCTTAATAATAAAAATAGTAACATGAACACCTCGAATCTGTTGTAAGCCTCAATTAGGATAAGGCGGTCCTAGGGAAATGGAAGCTTTATCTAGAGAAATGTGGGAATGGGGAATGTAGTCATTGTCTGGGGcagtggttctcaaagtgagatccttgcatcagtagcatctacatcacctgggaat-gggttagacacagaaactaggaactccgggggaagg
i rheMac8.chr15             I 332 C 0
s macFas5.chr15             106250208 520 + 112612857 AATAAAGTAGCAATTCCCAAAGTGCAGCAGAAGCTCTTCTAATTTCAAACATGAAAATTACTGAAGTGTTTGTTTCAGCTGGTGCCTTCTGTTGTTTTCCTTTTCCATCTTCAAAGAAGACCTGGGACGGGAGCCAGCAGCCCTGCCTGTGCCCTGCCTCCACCCTGCCCTTCCTCATGCCCAAAGAC-GACAATGCCTTTGTTTCTCACCATCTATGTTATGCTGAGGTATTTCTATGCATATAATACCTCGTTCTGTTGCTTTTGAATTTTTTTCTACGAAAATTTCCTGGTTTTACCTTAATAATAAAAATAGTAACATGAACACCTCGAATCTGTTGTAAGCCTCAATTAGGATGAGGCGGTCCTAGGGAAATGGAAGCTTTATCTAGAGAAATGTGGGCATGGGGAATGTAGTCATTGTCTGGGGcagtggttctcaaagtgagatccttgcatcagtagcatctacatcacctgggaat-gggttagacacagaaactaggaactccgggggaagg
i macFas5.chr15             I 1 C 0
s macNem1.NW_012012133v1     22630489 520 +  28977278 AATAAAGTAGCAATTCCCAAAGTGCAACAGAAGCTCTTCTAATTTCAAACATGAAAATTACTGAAGTGTTTGTTTCAGCTGGTGCCTTCTGTTGTTTTCCTTTTCCATCTTCAAAGAAGACCTGGGACGGGAGCCAGCAGCCCTGCCTGTGCCCTGCCTCCACCCTGCCCTTCCTCATGCCCAAAGAC-GACAATGCCTTTGTTTCTCACCATCTATGTTATGCTGAGGTATTTCTATGCATATAATACCTCGTTCTGTTGCTTTTGAATTTTTTTCTACGAAAATTTCCTGGTTTTACCTTAATAATAAAAATAGTAACATGAACACCTCGAATCTGTTGTAAGCCTCAATTAGGATAAGGCGGTCCTAGGGAAATGGAAGCTTTATCTAGAGAAATGTGGGCATGGGGAATGTAGTCATTGTCTGGGGcagtggttctcaaagtgagatccttgcatcagtagcatctacatcacctgggaat-gggttagacacagaaactaggaactccgggggaagg
i macNem1.NW_012012133v1    I 333 C 0
s cerAty1.NW_012000030v1      1899265 520 +   8072957 AATAAAGTAGCAATTCCCAAAGTGCAACAGAAACTCTTCTAATTTCAAACATGAAAATTACTGAAGTGTTTGTTTAAGCTGGTGCCTTCTGTTGTTTTCCTTTTCCATCTTCAAAGAAGACCTGGGACTGGAGCCAGCAGCCCTGCCTGTGCCCTGCCTCCACCCTGCCCTTCCTCATGCCCAAAGAC-GACAATGCCTTTGTTTTTCACCATCTATGTTATGCTGAGGTATTTCTATGCATATAATACCTCGTTCTGTTGCTTTTGAATTTTTTTCTACGAAAATTTCCTGGTTTTACCTTAATAATAAAAATAGTAACATGAACACCTCGAGTCTGTTTTAAGCCTCAATTAGGATAAGGCGGTCCTAGGGAAATGGAAGCTTTATCTAGAGAAATGTGGGCATGGGGAATGTAGTCATTGTCTGGGGcagtggttctcaaagtgagatccttgcatcagtagcatctacatcacctgggaat-gagttagacacagaaactaggaactccgggggaagg
i cerAty1.NW_012000030v1    I 328 C 0
s chlSab2.chr12             102617334 515 + 108555830 AATAAAGTAGCAATTCCCAAAGTGCAACAGAAGCTCTTCTAATTTCAAACATGAAAATTACTGAAGTGTTTGTTTAAGCTGGTGCCTTCCGTTGTTTTCCTTTTCCATCTTCAAAGAAGACCTGGGACTGGAGCCAGCAGCCCTGCCTGTGCCCTGCCTCCACCCTGCCCTTCCTCATGCCCAAAGACTGACAATGCCTTTGTTCCTCACCATCTATGTTATGCTGAGGTATTTCTATGCATATAATACCTCGTTCTGTTGCTTTTGAA-TTTTTTCTACGAAAATTTCCTGGTTTTACCTTAATAATAAAAATAGTAACATGAACACCTCGAGTCTGTTGTAAGCCTCAGTTAGGATAAGGCAGTCCTAGGGAAGTGGAAGCTTTATCTAGAGAAACGTGGGCATGGGGAATGTAGTCATTGTCTGGGGcagtggttctcaaagtgagatccttgcatcagtagcatctacatca-----gaat-gggttagacacagaaactagaaactccaggggaagg
i chlSab2.chr12             I 324 C 0
s manLeu1.NW_012104154v1      2112240 520 +   2144893 AATAAAGTAGCAATTCCCAAAGTGCAACAGAAGCTCTTCTAATTTCAAACATGAAAATTACTGAAGTGTTTGTTTAAGCTGGTGCCTTCTGTTGTTTTCCTTTTCCATCTTCAAAGAAGACCTGGGACTGGAGCCAGCAGCCCTGCCTGTGCCCTGCCTCCACCCTGCCCTTCCTCATGCCCAAAGAC-GACAATGCCTTTGTTTTTCACCATCTATGTTATGCTGAGGTATTTCTATGCATATAATACCTCGTTCTGTTGCTTTTGAATTTTTTTCTACGAAAATTTCCTGGTTTTACCTTAATAATAAAAATAGTAACATGAACACCTCAAGTCTGTTGTAAGCCTCAATTAGGATAAGGCGGTCCTAGGGAAATGGAAGCTTTATCTAGAGAAATGTGGGCATGGGGAATGTAGTCATTGTCTGGGGcagtggttctcaaagtgagatccttgcatcagtagcatctacatcacctgggaat-gggttagacacagaaactaggaactccgggggaagg
i manLeu1.NW_012104154v1    I 333 C 0
s colAng1.NW_012115910v1      6767136 510 -   6934359 AATAAAGTAGCAATTCCCGAAGTGCAACAGAAGCTCTTCTAATTTCAAACCTGAAAATTACTGAAGTATTTGTTTAAGCTGATGTCTTCTATTGTTTTCCTTTTCCATCTTCAAAGAAGACCCCGGGCTGAAGCCAGCAGCCCTGCCTGTGCCCTGCCTGCACCCTGTCCTTCCTCGTGCCCAAGGGCTGACAATGCC-TTGTTTCCCAGAATCTATGTTATGTTGAGGTATTTCTATGCATATAATACCTTGCTCAGTTGCTTTTGAATTTTTTTCTATGAAAATTTCCTGGTTTTACCTTAATAATAAAAATAGTACCATGAACACCTCAAGTCTGTTGTAAGCCTCAATTAGGATA----------AGGGAAATGGAGGCTTTACCTAGAGAAATGTGGGCATGGGGAATGTAGTCATTATCTGGGGcagtggttctccaagtgaggtccttgcatcagcagcatttacatcatctgggaatggggtcagacacagaggccaaaaactct-ggggaagg
i colAng1.NW_012115910v1    I 7 C 0

a score=2578770.000000
s hg38.chr15_KI270851v1_alt     21955 874 +    263054 ctcaggtgtaggcagcttcacaagctccttcggggattctttgcaggctctagtttaagaaccattgATCTAAGAA------------------------------------------------------------------------------------------------AATGGAGACTGGTTTTGGTGTAATATCAGCCTTACTAGTAATTTAAGCCTTATTTGGGGcagtggctctcaactgtgagcaattttgcccagtaagggtcatgggcaaggactggagatgaatttgtttgccacagttgggcaggtgggCAGAGGCTCCCCAAACCGAGGAGTcaaagaattctccagcccaaactgtcaataatgagagggctaagaaaccctgATCTAGAATAATGTGGGTGTAGGATAATTTAAGCCCCATCAGGTCCTAGGTAGGGTAAATGAGGCCGTAGTTAAGGTAACATAGGCCTCATCTAGTTTGACGTAG-ATTTCTTCACAGTAACTTGTGCCTTACTGTGTAGGTACTGGGTCTTCCTTCAAAGCTTATCTAGGAAGACCCCTCTTTAGGGAAATTCACAAGGTGAGAGGTTCCTGTCTAGTCTCGGTGCCCTCTGTGAGGCCTCCTCTGCTTCTGGAAGCCTGGCTGCTCCAATCTCTTTCTAGGTGGCTGGGGCAGCCGCTCGACATTCACGCCACCTTGTGGCCACCGGTGCCACAGCGGGTACATCGCCTTCTTTGGGTCCCCTCATC---ATAATTGTTTATCAATAATGATTGATAAGAGTAACACCCGACCCTTGTAGGATCCATGTGTTTCTTGGCAAGTGTTTTATAGAGAGTGGTTATTTATGAAAGGAAGTCACCGGTAGAATGATTTTGAGACTTTTATAAGTAAATGACCTGCCGTTGCTCCCTTTTTTAAAA-ATGTATAAATAGAATGATAATAAAACTCATTGCA
s gorGor5.CYUI01000350v1        25239 874 -    142253 ctcaggtgtaggcagcttcacaagctccttaggggattctttgcaggctccagtttaagaaccattgATCTAAGAA------------------------------------------------------------------------------------------------AATGGAGACTGGTTTTGGTGTAATATCAGCCTTACTAGTAATTTAAGCCTTATTTGGGGcagtggctctcaactgtgagcaattttgcccagtaagggtcatgggcaaggactggagatgaatttgtttgccacagttgggcaggtgggCAGAGGCTCCCCAAACTGAGGAGTcaaagaattctccagcccaaactgtcaataatgagagggctaagaaaccctgATCTAGAATAATGTGGGTGTAGGATAATTTAAGCCCCATCAGGTCCTAGGTAGGGTAAATGAGGCCATAGTTAGGGTAACGTAGGCCTCATCTAGTTTGACATAG-ATTTCTTCACAGTAACTTGTGCCTTACTGTGTAGGTACTGGGTCTTCCTTCAAAGCTTATCTAGGAAGACCCCTCTTTAGGGAAATTCACAAGGTGAGAGGTTCCTGTCTAGTCCCAGGGCCCTCTGTGAGGCCTCCTCTGCTTCTGGAAGCCTGGCTGCTCCAACCTCTTTCTAGGTGGCTGGGGCAGCCGCTCGACATTCACGCCACCTTGTGGCCACCGGTGCCACAGCGGGTACATCGCCTTCTTTGGGTCCCCTCATC---ATAATTGTTTATCAATAATGATTGATAAGAGTAACACCCGACCCTTGTAGGATCCATGTGTTTCTTGGCAAGTGTTTTATAGAGAGTGGTTATTTATGAAAGGAAGTCACCGGTAGAGTGCTTTTGAGACTTTTATAAGTAAATGACCTGCCCTTGCTGCGTTTTTAAAAA-ATGTATAAATACAATGATAATAAAACTCATTGCA
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108339454 870 + 111343173 ctcaggtgtctgcgacttcacaagctccttaggggattccgtgcaggctgccgtttgagaaccactgATCTAAGAA------------------------------------------------------------------------------------------------AATGGAGATTGGTTTTGGTGTAGTATCAGCCTTGCTAGTAATTTAAGCCTTGTTTGGGGcagtggctctccactgtgagcgattttggccagtgagggtcacgggcaaggtctggagacgagtttggttgccacagttgggcaggtgggCAGAGGCTCCCCAAACCGAGGAGTcaaataattctccagcccaaactgtcaataatgagagggctgagaaatcctgATCTAGAATAATGTGGGCCCAGGATAATTTAAGCCCCATCAGCTCCTATATAGGGGAAATGAGGCTGTAGTTAGGGTGACATAGGCCTCATCTAGTTTGACATAGTTTTTCTTTATAGTACTTTGTGCCTTACTCTG--GGCACTGGGCCTTCCTTCGAAGCTTATCTAGGGAGACCCCTCTTTAGGGAAATTCACAAGGTGAGAGGTTCCTGTCTAGTCCCAGTGCCCTCGGTGAGG---CCTCTGCTTCCGGAAGCCTGGCTGCTCCAACCTCTTTCTAGGTGGCTGGGGCGGCTGCTGGACATTCACGCCACCTTGTGGCCACCGGTGCCACAGCAGGTGCATTGCCTTCTTTGTGTCTCCTCATC---ATAATTGTTTATCAATAATGACTGATAAGAGTAACA-CCAACCCTTGTAGGATCCATGTGTTTCTTGGGAAGTGTTTTATAGAGAGTGGTTATTTATGAAAGGACGTCATCGGTAAAGTAACTTTGAGACTTTTATAAGTAAATGACCTACTCTTGCTCCCTTTTAAAAAATATTTACAAATACAATGATAATAAAACTCATTGCA
i rheMac8.chr15             C 0 I 1163
s macFas5.chr15             106250728 870 + 112612857 ctcaggtgtctgcgacttcacaagctccttaggggattccgtgcaggctgccgtttgagaaccactgATCTAAGAA------------------------------------------------------------------------------------------------AATGGAGATTGGTTTTGGTGTAGTATCAGCCTTGCTAGTAATTTAAGCCTTGTTTGGGGcagtggctctccactgtgagcgattttggccagtgagggtcacgggcaaggtctggagacgagtttggttgccacagttgggcaggtgggcagaggctccccaaaccgaggagtcaaataattctccagcccaaactgtcaataatgagagggctgagaaatcctgATCTAGAATAATGTGGGCCCAGGATAATTTAAGCCCCATCAGCTCCTATATAGGGGAAATGAGGCTGTAGTTAGGGTGACATAGGCCTCATCTAGTTTGACATAGTTTTTCTTTATAGTACTTTGTGCCTTACTCTG--GGCACTGGGCCTTCCTTCGAAGCTTATCTAGGGAGACCCCTCTTTAGGGAAATTCACAAGGTGAGAGGTTCCTGTCTAGTCCCAGTGCCCTCGGTGAGG---CCTCTGCTTCCGGAAGCCCGGCTGCTCCAACCTCTTTCTAGGTGGCTGGGGCGGCTGCTGGACATTCACGCCACCTTGTGGCCACCGGTGCCACAGCAGGTGCATTGCCTTCTTTGTGTCTCCTCATC---ATAATTGTTTATCAATAATGACTGATAAGAGTAACA-CCAACCCTTGTAGGATCCATGTGTTTCTTGGGAAGTGTTTTATAGAGAGTGGTTATTTATGAAAGGACGTCATCGGTAAAGTAACTTTGAGACTTTTATAAGTAAATGACCTACTCTTGCTCCCTTTTAAAAAATATTTACAAATACAATGATAATAAAACTCATTGCA
i macFas5.chr15             C 0 I 1166
s macNem1.NW_012012133v1     22631009 894 +  28977278 ctcaggtgtctgcgacttcacaagctccttaggggattccgtgcaggctgccgtttgagaaccactgATCTAAGAAAATGGAGAT------------------------------------------------------------------------TGGTTTTGGTGTAATAATGGAGATTGGTTTTGGTGTAGTATCAGCCTTGCTAGTAATTTAAGCCTTGTTTGGGGcagtggctctccactgtgagtgattttggccagtgagggtcacgggcaaggtctggagacgagtttggttgccacagttgggcaggtgggCAGAGGCTCCCCAAACCGAGGAGTcaaataattctccagcccaaactgtcaataatgagagggctgagaaatcctgATCTAGAATAATGTGGGCCCAGGATAATTTAAGCCCCATCAGCTCCTATATAGGGGAAATGAGGCTGTAGTTAGGGTGACATAGGCCTCATCTAGTTTGACATAGTTTTTCTTTATAGTACTTTGTGCCTTACTCTG--GGCACTGGGCCTTCCTTCGAAGCTTATCTAGGGAGACCCCTCTTTAGGGAAATTCACAAGGTGAGAGGTTCCTGTCTAGTCCCAGTGCCCTCGGTGAGG---CCTCTGCTTCCGGAAGCCTGGCTGCTCCAACCTCTTTCTAGGTGGCTGGGGCAGCTGCTGGACATTCACGCCACCTTGTGGCCACCGGTGCCACAGCAGGTGCATTGCCTTCTTTGTGTCTCCTCATC---ATAATTGTTTATCAATAATGACTGATAAGAGTAACA-CCAACCCTTGTAGGATCCATGTGTTTCTTGGGAAGTGTTTTATAGAGAGTGGTTATTTATGAAAGGACGTCATCGGTAAAGTAACTTTGAGACTTTTATAAGTAAATGACCTACTCTTGCTCCCTTTTAAAAAATATTTACAAATACAATGATAATAAAACTCATTGCA
i macNem1.NW_012012133v1    C 0 I 1164
s cerAty1.NW_012000030v1      1899785 942 +   8072957 ctcaggtgtctgcgacttcacaagctccttaggggattccgtgcaggctgccgtttgagaaccactgATCTAAGAAAATGGAGATTGGTTTTGGTGTAATAATGGAGACTGGTTTTGGTGTAACAATGGAGAC------------------------TGGTTTTGGTGTAATAATGGAGACTGGTTTTGGTGTAGTATCGGCCTTGCTAGTAATTTAAGGCTTGTTTGGGGcagtggctctccactgtgagcgattttggccagtgagggtcacgggcaaggtctggagacgagtttggttgccacagttgggcaggtgggCAGAGGCTCCCCAAACCGAGGAGTcaaataattctccagcccaaactgtcaataatgagagggctgagaaatcctgATCTAGAATAATGTGGGCCCAGGATCATTTAAGCCCCATTAGCTCCTATATAGGGGAAATGAGGCTGTAGTTAGGGTGACGTAGGCCTCATCTAGTTTGACATAGTTTTTCTTTATAGTACTTTGTGCCTTACTCTG--GGCACTGGGCCTTCCTTCGAAGCTTATCTAGGGAGACCCCTCTTTAGGGAAATTCACAAGGTGAGAGGTTCCTGTCTAGTCCCAGCGCCCTCGGTGAGG---CCTCTGCTTCCGGAAGCCGGGCTGCTCCAACCTCTTTCTAGGTGGCTGGGGCGGCTGCTGGACATTCACGCCACCTTGTGGCCACCGGTGCCACAGCAGGTGCATTGCCTTCTTTGTGTCTCCTCATC---ATAATTGTTTATCAATAATGACTGATAAGAGTAACA-CCAACCCTTGTAGGATCCATGTGTTTCTTGGGAAGTGTTTTATAGAGAGTGGTTATTTATGAAAGGACGTCATCGGTAAAGTAACTTTGAGACTTTTATAAGTAAATGACCTACTCTTGCTCCCTTTTAAAAAATATTTATAAATACAATGATAATAAAACTCATTGCA
i cerAty1.NW_012000030v1    C 0 I 1193
s chlSab2.chr12             102617849 894 + 108555830 ctcaggtgtctgctacttcacaagctccttaggggattccgtgcaggctgtagtttgagaaccattgATCTAAGAAAATGGAGAT------------------------------------------------------------------------TGGTTTTGGTGTAATAATGGAGATTGGTTTTGGTGTCATATCGGCCTTGCTGGTAATTTAAGCCTTGTTTGGGGcagtggctctccactgtgaacgattttggccagtgagggtcacgggcaaggtctggagacgagtttggttaccacagttgggcaggtaggCAGAGGCGCCCCAAACCGAGTAGTcaaataattctccagcccaaactgtcaataatgagaggtctgagaaatcctgATCTAGAATAACGTAGGCCCAGGATAATTGAAGCCCCATCAGCTCCTATATAGGGTAAATGAGGCTGTAGTTAGGGTGATGTAGGCCTCATCTAGTTTGACAGAGTTTTTCTTTATAGTACTTTGTGCCTTACTCTG--GGCACTGGGTCTTCCTTCAAAGCTTATCTAGGGAGACCTCTCTTTAGGGAAATTCACAAGGTGAGAGGTTCCTGTCTAGTCCCAGTGCCCTCGGTGAGG---CCTCTGCTTCCGGAAGCCCGGCTGCTCCAACCTCTTTCTAGGTGGCTGGGGTGGCTGCTGGACATTCACGCCACCTTGTGGCCACCGGTGCCACAGCAGGTGCATTGCCTTCTTTGTGTCTCCTCATC---ATAATTATTTATAAATAATGACTGATAAGAGTAACA-CCAACCCTTGTAGGATCCATGTGTTTGTTGGGAAGTGTTTTATAGAGAGTGGTTATTTATGAAAGGACGTCACTGGTAAAGTAACTTTGAGACTTTTATAAGTAAATGACCTACTCTTGCTCCCTTTTAAAAAATATTTATAAATACAATGATAATAAAACTCATTGCA
i chlSab2.chr12             C 0 I 1146
s manLeu1.NW_012104154v1      2112760 942 +   2144893 ctcaggtgtctgcgacttcacaagctccttaggggattccgtgcaggctgccgtttgagaaccactgATCTAAGAAAATGGAGAT------------------------TGGTTTTGGTGTAATAATGGAGACTGGTTTTGGTGTAACAATGGAGACTGGTTTTGGTGTAATAATGGAGACTGGTTTTGGTGTAGTATCGGCCTTGCTAGTAATTTAAGCCTTGTTTGGGGcagtggctctccactgtgagcgattttggccagtgagggtcacgggcaaggtctggagacgagtttggttgccatagttgggcaggtgggCAGAGGCTCCCCAAACCGAGGAGTcaaataattctccagcccaaactgtcaataatgagagggctgagaaatcctgATCTAGAATAACGTGGGCCCAGGATCATATAAGCCCCATCAGCTCCTATATAGGGGAAATGAGGCTGTAGTTAGGGTGACGTAGGGCTCATCTAGTTTGACATAGTTTTTCTTTATAGTACTTTGTGCCTTACTCTG--GGCACTGGGCCTTCCTTCGAAGCTTATCTAGGGAGACCCCTCTTTAGGGAAATTCACAAGGTGAGAGGTTCCTGTCTAGTCCCAGTGCCCTCGGTGACG---CCTCTGCTTCCGGAAGCCCGGCTGCTCCAACCTCTTTCTAGGTGGCTGGGGCGGCTGCTGGACATTCACGCCACCTTGTGGCCACCGGTGCCACAGCAGGTGCATTGCCTTCTTTGTGTCTCCTCATC---ATAATTGTTTATCAATAATGACTGATAAGAGTAACA-CCAACCCTTGTAGGATCCATGTGTTTCTTGGGAAGTGTTTTATAGAGAGTGGTTATTTATGAAAGGACGTCATCGGTAAAGTAACACTGAGACTTTTATAAGTAAATGACCTACTCTTGCTCCCTTTTAAAAAATATTTATAAATACAATGATAATAAAACTCATTGCA
i manLeu1.NW_012104154v1    C 0 I 1169
s colAng1.NW_012115910v1      6767646 870 -   6934359 ctc-ggtgtctgcagcttcataagctcc-taggggattccatgcaggctccagtttgagaaccattgATCTAAGAA------------------------------------------------------------------------------------------------AATGGAGACTGGTTTTGGTGCAATATCTGCTTTGCTAGTAATTTAAGCCTTATTTGGGGcagtggctctcaactgtgagcaattttgcccagtaagggtcacaggcaaggtctggagatgaatttgtttgccgcagttgggcaggtgggtagaggctccccaaaccagggagtgaaagaattttccagcccaaactgtcaacaatgagagggctgaggaaccctCACCTAGAATAATGTGGGTCTAGGATAATTTAAGCCCCATCAGGTCCTATATAGGGTAAATGAGGCCGTAGTTAGGGTAATGTAGACCTCATTTAGTTTGACATAG-ATTTCTTTACAGTAACTTGTGCCTTACTCTG--GGTACTGGGTCTTCCTTCAAAGCTTATCTAGGAAGACCCCTCTTTAGGGAAATTCACAAGAAGAGAGGTTCCTGTCTAGTCCCAGTGCCCTCGGTGAGGCCTCCTCTGCTTCTGGAAGCCTAGCTGATCCCATCTCTTTCTAGGTGGCTGGGGCGGCCGCTGGACATTCACGCCACCTTGTGGCTACCAGTGCCACAGAGGGTGCATCGC---CTTTGGGTCTCCTTATCATGATGATTGTTTATCAATAATGATTGATAAGAGTAACACCCGACCCTTGTAGGATCCATGTGTTTCTTGGCAAATGTTTTATAGACAATGGTTATTTATGAAAGGAAGTCACCGGTACAGTGATTTTGAGACTTTCATAAGTAAATGACCTGCTCTTGCTCTCTTTTTAAAAA-ATTATTAAATACAAAGATAATAAAACTCATTGCA
i colAng1.NW_012115910v1    C 0 I 1168
e nomLeu3.chr6               75903756   0 + 121039945 C

a score=10703980.000000
s hg38.chr15_KI270851v1_alt     22829 3696 +    263054 TTATATTTCCACCAGGAATGTGTGATAGTTTCCATTAAATATATGACATCCTTGCTTCTCTCATACAGAAATGTatgcttgccaatatttggt-atttttct-gggtggttatttgggtaattttggctatgttaatgggtatgtagtagtatctcattatgattttaatttgcatttccagagaactaattatgctgagaatc-tttcatgtgcttattggcctttttttatcttcttttgtgaaatgtctgttcaaaaagactattttatctagttttttaCAACTAAAATTGTGTGTATAATTATAGATTCATTTCACATGCAGTTGTAAGAAATTtccctttgtataaactttggacccctatctctctctac-----ctccttgtaaggccaataactcttggatttgccacttgaagggtattttctagatcttctaggcctgcttcattctatttca--tttttttccttttgtctcct----ttgactaggaggtattttcaattagcctgtcttcaaggtcactaaatctt---ttttttttttttctaaagacaaagtcttgctctgtcacccgggctagagaacagtggcccaatctcagctcactgcaacgtccgccatctgggttcaagtgattctcgtgtttcagcctccctagtacctgggattacaggtgcccatcaccatacctggctaatttttgtatttgtagtagagatgaggtttcaccatgttggccagggaagtcttgaactcctgacctcaggtgatctgctagcctcagcctcccaaaatgctggtattacatgcgtgagtcaccaggcctggccccaagctcactaattccttcttcttcatgatcaattctgctattaagagattcagatgcattctttagtatgtcagttgcattttttaactccagaatttctgcttgatttttaaaaattatttcaatctctttgttaaatgtgtttgctaggatcctaaattgcttccctgtgttatattgaatttcattgagtttcctcaaaacagctattttgaattctctg-aaagatcacatacctctgtctttctggaattggctcctggtgacttatttatttgacgaggccatattttcctggagagtcttgatgcttgtggatgtttggtagtgtctgggcattgaagagttaggcagtgtcatctttgcagttgggcttttttgtacccatcctttctgggaaagctttccaggtattccaagggacttg------ggtgttgcagtctaagccatatctgtattagggggcaccccaaacccagtaacactgtgattcttgcagactcagagaagtactgccttgatggtcttggataagggccagaagaattctctggatttatattttgcaatttaaacttatcaccatttaatttcatataatatgatacccattcacgtatattgtaaaaaccttgcaacaatatatttctatctcctcctcccatcttttgtgctactgtcatTCttaggaaaaacccgaactgtttctcctctgcgtccacaccaacacaacagcaatctacacagcagacttctgagaccctgagtatgtgggggctttctcctcaccagcaagcaggcagtcacctctgcagtgggcaccagctggacgtcctccagttcaattccaactctatctacccagagctggcatcagatc--ccacaaagagagggcccgttctgcaaggctgccacttccccacccccagacaccagtcataagtccaggcttctggaatttctaatcaactggcttcaagctgggcttcccacaatcccctctatgggtttgattaatttgctggagtggctcacagaactcagggaaatgcttatgttgtttaccagtttattatgaaggacattttaaaggatacggatggacagccatatgaagagatacacacaggatgaggtctggaagattttgaagggtcccaggtgcaggagcttgtgtccatgtggattcagggagcaccaccctctcagcacgtgaatgagttcttcaccttttagtcacccttcatgtgttcagctctccagaagcttccaaaccctgtcctcttgggtctttatatggggaatttgttggataggcctgattgaagcatgggtgac--tgtggaaatgtgattggac-aaaatgggttctaaacccagcaaggcctgtgtgttcagattcttcttggcctctctgtgtagccttccttcctccaggttatgagacaaaaccctctttggaatgagggtctcatgaccca----cagaatccagccatgggcgggggaaagaagggcaggagaaggtgtgagagagagattctgtttactgtcacaagggctatgagagttatgaacaaggaactgtggatgaaaacatatatgtatatGTTTCAATGACATGCCACAGCCATAC---TTtcatacagtttgtttctacatacgtcctaaacaccatcatgctttg---ttatttttgcttaaactgtaaattatttcat--aaaaaattatgaaaagcaagataaaagtattttatatttacctgtatgtttaccttttccagga---ttaattctttagtgtTTGGTAACGTGTTTTCCTTG-----TCTAGTGATTTACATCGATTTTTGAAGGGATAAGACCAGTTGCCTGGGTAAAAATTTCACTTTCTGGATTTGCTTAATAATTTTGATATTCTTATTCCTCTATTGACTATTCTAGAGCTGGGAGAATACATCAGACATCTGTTGTACATAGAGTCATCATGAAATAGTAATTTATGTGCAAATGCCAGCTTTTCAAAAGTTGATGCCAATTTGTGTAAGTTTATGGTAGAATTTGCTAATCTATTTGTTTCAGAAAGATTTGGGAAATCAGATAGTGATCTCATTAAATCTTAGTAT-AGCATGACATATATTAGACCCTAAATAAATGCCGCTAAGATCAGTTTTATGATGAGAAGAAACAACGGCTTGGTTGGGCTCCATAAGGAATTTTGATTTTGTTCCCCATCATTGACATTCCCACCTGTAGAATAAGTGCTTAGCTTTCACACCTGTTTCCTTTTAGCATTCTAAATCAGAACCTCAGAAGCAAAATTAGGCTCCAGTTTTGGTTTAGAGTTTATCTTAGTAAACACAAAATATTGGTGTCAACATCACCATAAAGGAACATGTTTTAATTGCCATTAACATGAGAGAATAAGATGAATTCA---------------------GttccttctttgaacaaactttccccaggtgtgtgccttgctaggatctaccccagacaaggagggcacaaagaagccatgatctctgccatttctcctggacactcataggccagtgcaaagaaagacacttgcaagcaaaAGACTCCAGTATAGTGAGATGAGCTTGATTTTAGAGGTATTACAAAGAATGCTGGCTTCACCAGGAAAATAAGGATTAGCTCTGGCTGTGCCTGAGCAAGGAGGTCACCAGAGAAGAAGAGATGACTGGGTTGACTTTTGAAGCTTTgaagatgactgggttgaagtttcgaagagatgactgggtaggagttcagtatgaagggaaggttattccaggtaaaaggaccagcatttgt-aaaagcaaagagCAACTgctttcaactggggatgatttttc-agggcacatttggtaatgtccaaaggtgtttt-gttatc
s gorGor5.CYUI01000350v1        26113 3708 -    142253 TTATATTTCCACCAGGAATGTGTGATAGTTTCCATTAAATATATGACACCCTTGCTTCTCTCATACAGAAATGTatgcttgccaatatttggt-atttttct-gggtggttatttgggtaattttggctatgttaatgggtatgtagtagtatctcattatgattttaatttgcatttccagagaactaattatgctgagaatc-tttcatgtgcttattggcctttttttatcttcttttgtgaaatgtctgttcaaaaagactattttatctagttttttaCAACTAAAATTGCGTGTATAATTATAGATTCATTTCACATGCAGTTGTAAGAAATTtccctttgtataaactttggacccctatctctctctac-----ctccttgtaaggccaataactcttggatttgccacttgaagggtattttctagatcttctaggcctgcttcattctatttca--tttttttccttttgtctcct----ttgactaggaggtattttcaattagcctgtcttcaaggtcactaaatctt---ttttttttt---ctaaagacaaagtcttgctctgtcacccaggctagagaacagtggcccaatctcagctcactgcaacgtccgccttcttggttcaagtgattctcgtgtttcagcctccctagtacccgggattacaggtgcccatcaccatacctggctaatttttgtatttgtagtagagatggggtttcaccatgttggccagggaagtcttgaactcctgacctcaggtgatctgctagcctcagcctcccaaaatgctggtattacatgcgtgagtcaccaggcctggccccaagctcactaattccttcttcttcatgatcaattctgctattaagagattcagatgcattctttagtatgtcaattgcattttttaactccagaatttctgcttgatttttaaaaattatttcaatctctttgttaaatgtgtttgctaggatcctgaattgcttccctgtgttatattgaatttcactgagtttcctcaaaagagctattttgaattctctg-aaagatcacatatctct-tctttctggaattggctcctggtgacttatttatttgacgaggccatattttcctggagagtcttgatgcttgtggatgtttggtagtgtctgggcattgaagagttaggtggtatcatctttgcagttgggcttgtttgtacccatcctttctgggaaagctttccaggtattccaagggacttg------ggtgttgcagtctaagccatatctgtattagggggcaccccaaacccagtaacactgtgattcttgcagagtcagagaagtactgccttgatggtcttggataagggccagaagaattctctggatttatattttgcaatttaaacttatcaccatttaatttcatataatatgatacccattcacgtatattgtaaaaaccttgcaacaatatatttctatctcctcctcccatcttttgtgctactgtCATTCttaggaaaaacccgaactgtttctcctctgcgtccacaccaacacaacagcaatctacacagcagacttctgagaccctgagtatgtgggggctttctcctcaccagcaagcaggcagtcacctctgcagtgggcaccagctggacgtcctccagttcaattccaactctatctacccagagatggcatcagatc--ccacaaagagagggcccgttctgcaaggctgccacttccccacccccagacaccagtcataagtccaggcctctggaatttctaatcaactggcttcaagctgggcttcccacagtcccctctatgggtttgattaatttgctggagtggctcacagaactcagggaaatgcttatgttgtttaccagtttattatgaaggacattttaaaggatacagatggacagccatatgaagagatacacacaggatgaggtctggaagattttgaagggtcccaagtgcaggagcttgtgtccatgtggattcagggagcaccaccctctcagcacgtgaatgagttcttcaccttttagtcacccttcatgtgttcagctctccaga-gcttccaaaccctgtcctcttgggtctttatatggggaatttgttggataggcctgattgaagcatgggtgac--tgtggaaatgtgattggac-aaaatgggttctaaacccagcaaggcctgtgtgttcagattcttcttggcctctctgcgtagccttccttcctccaggttatgagacaaaaacctctttggaatgagggtctcatgaccca----cagaatccagccatgggcaggggaaagaagggcaggagaaggtgtgagagagagattctgtttactgtcataagggctatgagagttatgaacaaggaactgtggatgaaaacatatatgtatatGTTTCAATGACATGCCACAGCCATAC---TTtcatacagtttgtttctacaaatgtcctaaacaccatcatgctttg---ttatttttgcttaaacagtaaattatttcat--aaaaaattatgaaaagcaagataaaagtattttatatttacctgtatgtttaccttttccggca---ttaattctttagtgtTTGGTAAAGTGTTTTGCTTG-----TCTAGTGATTTACATTGATTTTTGAAGGGATAAGATCAGTTGCCTGGGTAAAAATTTCACTTTCTGGATTTGCTTAATAATTTTGATGTTCTTATTCCTCTATTGACTATTCTAGAGCTGGGAGAATACATCAGACATCTGTTGTACATACAGTCATCATGAAATAGTAATTTATGTGCAAATGCCAGCTTTTCAAAAGTTGATGCCAATTTGTAT--GTTTATGGTAGAATTTGCTAATCTATTTGTTTCAGAAAGATTTGGGAAATCAGATAGTGATCTCATTAAATCTTAGTAT-AGCATGACACATATTAGACCCTAAATAAATGCTGCTAAGATCAGTTTTATGATGAGAAGAAACGACGGCTTGGTTGGGCTCCATAAGGAATTTTGATTTTATTCCCCATCATTGACATTCCCACCAGTAGAATAAGTGCTTATCTTTCACACCCGTTTCCTTT-AGCATTCTAAATCAGAATCTCAGAAGCAAAATTAGGCTCCAGTTTTGGTTTAGAGTTTATCTTAGTAAACACAAAATATTGGTGTCAACATCACCATAAAGGAACATGTTTTAATTGCCGTTAACATGAGAGAATAAGATAAATTCTTATTTATCTTAAGATAGGTTTGTTCCTTCTTTGAACAAACTTTCCCCAGGTGTGTGCCTTGCTAGGATCTACCCCAGACAAGGAGGGCACAAA-AAGCCATGATCTCTGCCATTTCTCCTGGACACTCACAGGCCAGTGCAAAGAAAGATACTTGCAAGCAAAAGACTCCAGTATAGTGAGATGAGCTTGATTTTAGAGGTATTACAAGGAATGCTGGCTTCACCAGGAAAATAAGGATTAGCTCTGGCTGTGCCTGAGCAAGGAGGTCACCAGAGAAGAAGAGAAGACTGGGTTGACTTTTGAAGCTTTgaagatgactgggttgaagtttcgaagagatgactgggtaggagttcagtatgaagggaaggttattccaggtaaaaggaccagcatttgt-aaaagcaaagagCAACTgctttcaactggggatgatttttc-agggcacatttggtaatgtccaaaggtgtttt-gttatc
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108341487 3629 + 111343173 ttatatttctaccaggaatgtgtgatagtttccattaaatatatgacatccttgctt-tctcatacagaaatgtatgcttgtcaatatttggt-gtttttct-ggtggtttattttggtaatttttgctatgttaatgggtatgtagcagtatcccattatgattttaatttgcatttccagagaactaatgatgctgagaatcttttcatatgcttattggtc-ttttttatcttcttttgtaaaatatctgttcaaaAAGACGATTTTACCTAGTCTTTTACAACTAAAATTGTGTGgataattatagatttatatcacatgcagttgtaagaaatatcccttcgaataaactttccacccctctctctctctct-----ct-------acctcagtaactcttggatttgccacttgaagggtattttctagatcttctaggcctacttcattctttttcatgttttttcccttttgtctcct----ctg-------tgtattttcaattagcctgtcttcaagctcactaaatctc-ttttttttttt---tttgagacagagtcttgctctgtcgaccagactagagtacagtggcccaatctcggctcactgcaacctccgccttccaggttcaagcaattctggtgcctcagcctccctagtacctgggattacaggcgcctgtcaccacacctggctaatttttgcatttctaggagagatggggtttcaccatgttggccagggaggtcttgaactcctgatctcaggtgatctgcctgcctcagccccccaaagtgctgggattacatgcgtgaggcactgggcctggccccaagctcactaattctttctccttcatgatcaattctgctattaagagattcagatgcgttcttcagtatgtcagttgcatctttcaactccagaatttctgcttgatttcaaaaaatcatttcaatctctttgttaaatgtg-ttgataggattctgaattgcttctctgtgttatcttgaatttccttgagtttcctcaaaacagctattttgaattctctg-aaagatcacatatctccgtctttctggaattggctcctggtgacgtatttatctggtgaagccatgttttcctggagagtcttgatgcttgtggatgtttggtagtgtctgcgcattgaagagttaggaagcgtcatctttgccgttgggcgtgtttgtatccatcctttctgagaaagctttccaggtattccaagggacttg------ggtgttgtggtctaagccatatctgtattagggggcaccccaagcccagta--actgtgattcttgcagactcatagaagcactgccttgatggtcttgggtaagagccagaagaattcactggatttacattttgcattttaaatttatcaccatttaatttcatgtaatatgatgccaattcaagtatattgtaaaaactttgtaacaatatatttccatttcctcctcccatattttgtgctactgCCATtcttaggaaaaccccgaactgtgtctcctctgcattcacaccaacacaa---caatcctcacagaagagttctgagaccccaagtacgtgg-ggctttctcctcaccagcaagcgagcagtcacctctgcagcgggcaccagctggacatcctccagttcaattccaactctatctatctggagatggcatcagatc--ccacaaacaggg--cccagcctgcaaggctgccacttccccacccccagacaccagttgtaagtccaggcctctggaatttctaatcaactggcttcaagctgggcttcccacag-cccctctatgggtttgattaatttgctggagtggctcacagaactcagagaaaggcttatg----ttaccagtttattatgaaggacattttaaaggacgcagatgggcagctagatgaagagatacacacgggatgaggtctg---------gaagggtcccaagtgcgggagcttccgcccatgtggagtcagggagggcccccctctccgcacgtgaatgagttcttca-tttttagttacccatcatgtgttcagctctccagaagcttccaaaccctgtcttcttgggtctttatatggggactttgttggataggcctgattgaagcacgggcgactgtgtggaaatgtgattggac-aaaat-ggtcctaaacccagtaaggccggtgtgttcagattcttcttggcctctc--tgcagccttccttcctccagggcatgggacaaaaccctctttggaatgagggtctcatgacccacagtcagagtcctgccgtgggcgggggaaggaagggcaggagaaggtgtgagagagagattctgtttactgtcacaagtgctataagagttatgaaccaggaactgtggatgaaaacatgtatgtgtGCGTTTCAATGACATGTCACAGCCATACTTTATtcattcagttg-tttctacatatgttctaaacaccatcatactttgttattatttttgcttaaacagtaaattatttcataaaaaaaattatgaaaagcaagacaaaaatattttatttttatctgtatatttgccttttctgtcactcttaattctttggtgtTTGGTAACGTGTTTTGTTTGTTTTATCTAGTGATGTACATTGATTTTTGAAGGGATAAGATAAGTTGCCTTGGGAAAAATTTCACTTTCTGGATTTGTTTAATGATTGTTATGTTCTTCTTCCTCTGTTGAATATTCTAGAGCTGGGAGAATATATCAGACATCTATTGTATATACAGTCGTCATGAAATAGTTATTTATATGCAAATGCCAGCTTTTCAAAAGCTGATGCCCATTTGTATAAATTTATGCTAGAATTTGCTAATACATTTGTTTCAGAAAGATTTGtgaaatcagatagcgatctcattaaatcttagtatcagcatggcacatattagatgctaaataaatgctCCTGAGGTCAGTTTTACGATGAGAAGAAACGATGGCTTGGTAGGGCCCCATAAGGAATTTTGATTTCATTCCCCGTCCCTGACATTCCCGCTGGTAGAATAGGTCCTTGGCTTTCACACCTATTTCCTTTTGGCATTCGAAATCAGAACCTCAGAAGCAAAATTAGGCTCCAGCTTTGGTTTAGAGTTTATCTTAGTAAACACAAAATATTGGTGTCAACATCTCCATAAAGGAACATGTTTTAATTGCTGTTAACATGAGAGAATAAGATGAATTCA---------------------Gttcattctttgaacaaactttccccaggcgtgtgccttgctaggatctatcccagacaaggagggcacaattag-----------tgccatttctcctgggcactaataggctagggaaaagaaagatacttccaagcaaaagactccaatatagtgagatgagcttgattttagaggtagtacaaggaaccctggcttcacaaggaaaataaggcttagctctgcctgtgcctgagcaaggaggtcgccagagaag---agatgattgggttgagttttgaaggt------------------------------------agggtaggagtttggtataaagggaaggttattccaggtaaaatgaccagcatttgt-aaaagcaaacagcagctgctttcaactggggatgatttttctggggcacatttggtaaagtctaaaggtgttttggttatc
i rheMac8.chr15             I 1163 C 0
s macFas5.chr15             106252764 3627 + 112612857 ttatatttctaccaggaatgtgtgatagtttccattaaatatatgacatccttgctt-tctcatacagaaatgtatgcttgtcaatatttggt-gtttttct-ggtggtttattttggtaatttttgctatgttaatgggtatgtagtagtatcccattatgattttaatttgcatttccagagaactaatgatgctgagaatcttttcatatgcttattggtc-ttttttatcttcttttgtaaaatatctgttcaaaAAGACGATTTTACCTAGTCTTTTACAACTAAAATTGTGTGgataattatagatttatatcacatgcagttgtaagaaatatcccttcgaataaactttccacccctctctctctctct-----ct-------acctcagtaactcttggatttgccacttgaagggtattttctagatcttctaggcctacttcattctttttcattttttttcccttttgtctcct----ctg-------tgtattttcaattagcctgtcttcaagctcactaaatctc--tttttttttt---tttgagacagagtcttgctctgtcgaccagactagagtacagtggcccaatctcggctcactgcaacctccgccttccaggttcaagcaattctggtgcctcagcctccctagtacctgggattacaggcgcctgtcaccacacctggctaatttttgcatttctaggagagatggggtttcaccatgttggccagggaggtcttgaactcctgatctcaggtgatctgcctgcctcagcctcccaaagtgctgggattacatgcgtgaggcactgggcctggccccaagctcactaattctttctccttcatgatcaattctgctattaagagattcagatgcgttcttcagtatgtcagttgcatctttcaactccagaatttctgcttgatttcaaaaaatcatttcaatctctttgttaaatgtg-ttgataggattctgaattgcttctctgtgttatcttgaatttccttgagtttcctcaaaacagctattttgaattctctg-aaagatcacatatctccgtctttctggaattggctcctggtgacgtatttatctggtgaagccatgttttcctggagagtcttgatgcttgtggatgtttgctagtgtctgcgcattgaagagttaggaagtgtcatctttgccgttgggcttgtttgtatccatcctttctgagaaagctttccaggtattccaagggacttg------ggtgttgtggtctaagccatatctgtattagggggcaccccaagcccagta--actgtgattcttgcagactcatagaagcactgccttgatggtcttgggtaagagccagaagaattcactggatttacattttgcattttaaatttatcaccatttaatttcatgtaatatgatgccaattcaagtatattgtaaaaactttgtaacaatatatttccatttcctcctcccatattttgtgctactgCCATtcttaggaaaaccccgaactgtgtctcctctgcattcacaccaacacaa---caatcctcacagaagagttctgagaccccaagtatgtgg-ggctttctcctcaccagcaagcgagcagtcacctctgcagcgggcaccagctggacatcctccagttcaattccaactctatctatctggagatggcatcagatc--ccacaaacaggg--cccagcctgcaaggctgccacttccccacccccagacaccagttgtaagtccaggcctctggaatttctaatcaactggcttcaagctgggcttcccacag-cccctctatgggtttgattaatttgctggagtggctcacagaactcagagaaaggcttatg----ttaccagtttattatgaaggacattttaaaggacgcagatgggcagctagatgaagagatacacacgggatgaggtctg---------gaagggtcccaagtgcgggagcttccgcccatgtggagtcagggaggg-ccccctctccgcacgtgaatgagttcttca-tttttagttacccatcatgtgttcagctctccagaagcttccaaaccctgtcttcttgggtctttatatggggactttgttggataggcctgattgaagcacgggcgactgtgtggaaatgtgattggac-aaaat-ggtcctaaacccagtaaggccggtgtgttcagattcttcttggcctctc--tgcagccttccttcctccagggcatgggacaaaaccctctttggaatgagggtctcatgacccacagtcagagtcctgccgtgggcgggggaaggaagggcaggagaaggtgtgagagagagattctgtttactgtcacaagtgctataagagttatgaaccaggaactgtggatgaaaacatgtatgtgtGCGTTTCAATGACATGTCACAGCCATACTTTATtcattcagttg-tttctacatatgttctaaacaccatcatactttgttattatttttgcttaaacagtaaattatttcataaaaaaaattttgaaaagcaagacaaaaatattttatttttatctgtatatttgccttttctgtcactcttaattctttggtgtTTGGTAACGTGTTTTGTTTGTTTTATCTAGTGATGTACATTGATTTTTGAAGGGATAAGATAAGTTGCCTTGGGAAAAATTTCACTTTCTGGATTTGTTTAATGATTGTTATGTTCTTCTTCCTCTGTTGAATATTCTAGAGCTGGGAGAATATATCAGACATCTATTGTATATACAGTCGTCATGAAATAGTTATTTATATGCAAATGCCAGCTTTTCAAAAGCTGATGCCCATTTGTATAAATTTATGCTAGAATTTGCTAATACATTTGTTTCAGAAAGATTTGTGAAATCAgatagtgatctcattaaatcttagtatcagcatggcacatattagatgctaaataaatgctCCTGAGGTCAGTTTTACGATGAGAAGAAACGATGGCTTGGTAGGGCCCCATAAGGAATTTTGATTTCATTCCCCGTCCCTGACATTCCCACTGGTAGAATAGGTCCTTGGCTTTCACACCTATTTCCTTTTGGCATTCGAAATCAGAACCTCAGAAGCAAAATTAGGCTCCAGCTTTGGTTTAGAGTTTATCTTAGTAAACACAAAATATTGGTGTCAACATCTCCATAAAGGAACATGTTTTAATTGCTGTTAACATGAGAGAATAAGATGAATTCA---------------------Gttcattctttgaacaaactttccccaggcgtgtgccttgctaggatctatcccagacaaggagggcacaattag-----------tgccatttctcctgggcactaataggctagggaaaagaaagatacttccaagcaaaagactccaatatagtgagatgagcttgattttagaggtagtacaaggaaccctggcttcacaaggaaaataaggcttagctctgcctgtgcctgagcaaggaggtcgccagagaag---agatgattgggttgagttttgaaggt------------------------------------agggtaggagtttggtataaagggaaggttattccaggtaaaatgaccagcatttgt-aaaagcaaacagcagctgctttcaactggggatgatttttctggggcacatttggtaaagtctaaaggtgttttggttatc
i macFas5.chr15             I 1166 C 0
s macNem1.NW_012012133v1     22633067 3632 +  28977278 ttatatttctaccaggaatgtgtgatagtttccattaaatgtatgacatccttgctt-tctcatacagaaatgtatgcttgtcaatatttggt-gtttttct-ggtggtttattttggtaatttttgctatgttaatgggtatgtagtagtatcccattatgattttaatttgcatttccagagaactaatgatgctgagaatcttttcatatgcttattggtc-ttttttatcttcttttgtaaaatatctgttcaaaAAGACAATTTTACCTAGTCTTTTACAACTAAAATTGTGTGgataattatagatttatatcacatgcagttgtaagaaatatcccttcgaataaactttccacccctctctctctctct-----ct-------acctcagtaactcttggatttgccccttgaagggtattttctagatcttctaggcctacttcattctttttcattttttttcccttttgtctcct----ctg-------tgtattttcaattagcctgtcttcaagctcactaaatctctttttttttttt---tttgagacagagtcttgctctgtcgaccagactagagtacagtggcccaatctcggctcactgcaacctccgccttccaggttcaagcaattctggtgcctcagcctccctagtacctgggattacaggcgcctgtcaccacacctggctaatttttgcatttctaggagagatggggtttcaccatgttggccagggaggtcttgaactcctgatctcaggtgatctgcctgcctcagcctcccaaagtgctgggattacatgcgtgaggcactgggcctggccccaagctcactaattctttctccttcatgatcaattctgctattaagagattcagatgcgttcttcagtatgtcagttgcatctttcaactccagaatttctgcttgatttcaaaaaatcatttcaatctctttgttaaatgtg-ttgataggattctgaattgcttctctgtgttatcttgaatttccttgagtttcctcaaaacagctattttgaattctctg-aaagatcacatatctccgtctttctggaattggctcctggtgacgtatttatctggtgaagtcatgttttcctggagagtcttgatgcttgtggatgtttggtagtgtctgcgcattgaagagttaggaagtgtcatctttgccgttgggcttgtttgtatccatcctttctgagaaagctttccaggtattccaagggacttg------ggtgttgtggtctaagccatatctgtattagggggcaccccaagcccagta--actgtgattcttgcagactcatagaagcactgccttgatggtcttgggtaagagccagaagaattcactggatttacattttgcattttaaatttatcaccatttaatttcatgtaatatgatgccaattcaagtatattgtaaaaactttgtaacaatatatttccatttcctcctcccatattttgtgctactgCCATtcttaggaaaaccccgaactgtgtctcctctgcattcacaccaacacaa---caatcctcacagaagagttctgagaccccaagtatgtgg-ggctttctcctcaccagcaagcgagcagtcacctctgcagcgggcaccagctggacatcctccagttcaattccaactctatctatctggagatggcatcagatatgccacaaacaggg--cccagcctgcaaggctgccacttccccacccccagacaccagttgtaagtccaggcctctggaatttctaatcaattggcttcaagctgggcttcccacag-cccctctatgggtttgattaatttgctggagtggctcacagaactcagagaaaggcttatg----ttaccagtttattatgaaggacattttaaaggacgcagatgggcagctagatgaagagatacacacgggatgaggtctg---------gaagggtccgaagtgcgggagcttccgcccatgtggagtcagggagggcccccctctccgcacgtgaatgagttcttca-tttttagttacccatcatgtgttcagctctccagaagcttccaaaccctgtcttcttgggtctttatatggggactttgttggataggcctgattgaagcacgggcgactgtgtggaaatgtgattggac-aaaat-ggtcctaaacccagtaaggccggtgtgttcagattcttcttggcctctc--tgcagccttccttcctccagggcatgggacaaaaccctctttggaatgagggtctcatgacccacagtcagagtcctgctgtgggcgggggaaggaagggcaggagaaggtgtgagagagagattctgtttactgtcacaagtgctataagagttatgaaccaggaactgtggatgaaaacatgtatgtgtGCGTTTCAATGACATGTCACAGCCATACTTTATtcattcagttg-tttctacatatgttctaaacaccatcatactttgttattatttttgcttaaacagtaaattatttcattaaaaaaattatgaaaagcaagacaaaaatattttatttttatctgtatatttgccttttctgtcactcttaattctttggtgtTTGGTAACGTGTTTTGTTTGTTTTATCTAGTGATGTACATTGATTTTTGAAGGGATAAGATAAGTTGCCTTGGGAAAAATTTCACTTTCTGGATTTGTTTAATGATTGTTATGTTCTTCTTCCTCTGTTGAATATTCTAGAGCTGGGAGAATATATCAGACATCTATTGTATATACAGTCGTCATGAAATAGTTATTTATATGCAAATGCCAGCTTTTCAAAAGCTGATGCCCATTTGTATAAATTTATGCTAGAATTTGCTAATACATTTGTTTCAGAAAGATTTGTGAAATCAgatagtgatctcattaaatcttagtatcagcatggcacatattagatgctaaataaatgctCCTGAGGTCAGTTTTACGATGAGAAGAAACGATGGCTTGGTAGGGCCCCATAAGGAATTTTGATTTCATTCCCCGTCCCTGACATTCCCACTGGTAGAATAGGTCCTTGGCTTTCACACCTATTTCCTTTTGGCATTCGAAATCAGAACCTCAGAAGCAAAATTAGGCTCCAGCTTTGGTTTAGAGTTTATCTTAGTAAACATAAAATATTGGTGTCAACATCTCCATAAAGGAACAGGTTTTAATTGCTGTTAACATGAGAGAATAAGATGAATTCA---------------------Gttcattctttgaacaaactttccccaggcgtgtgccttgctaggatctatcccagacaaggagggcacaattag-----------tgccatttctcctgggcactaataggctagggaaaagaaagatacttccaagcaaaagactccaatatagtgagatgagcttgattttagaggtagtacaaggaaccctggcttcacaaggaaaataaggcttagctctgcctgtgcctgagcaaggaggtcaccagagaag---agatgattgggttgagttttgaaggt------------------------------------agggtaggagtttggtataaagggaaggttattccaggtaaaatgaccagcatttgt-aaaagcaaacagcagctgctttcaactggggatgatttttctggggcacatttggtaaagtctaaaggtgttttggttatc
i macNem1.NW_012012133v1    I 1164 C 0
s cerAty1.NW_012000030v1      1901920 3619 +   8072957 ttatatttccaccaggaatgtgtgatagtttccattaaatatatgacatccttgctt-tctcatacagaaatgtatgcttgtcaatatttggt-gttttcct-ggtggtttattttggtaatttttgctatgttaatgggtatgtagtagtatcccattatgattttaatttgcatttccagagaactaatgatactgagaatcttttcatatgcttattggtc-ttttttatcttcttttgtaaaatatctgttcaaaaagatgattttacctagtcttttaCAACTAAAATTGTGTGgataattatagatttatatcacatgcagttgtaagaaatatcccttcgaataaactttccacacctctctctctctct-----ct-------acctcagtaactcttggatttgccacttgaagggtattttctagatcttctcggcctacttcattctttttcat-ttttttcccttttgtctcct----ctg-------tgtattttcaattagcctgtcttcaagctcactaaatctc---ttttttttt---tttgagacagagtcttgctctgtcgaccagactagagtacagtggcccaatctcggctcactgcaacctccgccttccaggttcaagcaattctggcgcctcagcctccctagtacctgggattacaggcgcctgtcaccacacctggctaatttttgcatttctaggagagatggggtttcaccatgttggccagggaggtcttgaactcctgatctcaggtgatctgcctgcctcagcctcccaaagtgctgggattacatgcgtgaggcactgggcctggccccaagctcactaattctttcttcttcatgatcaattctgctattaagagattcagatgcattcttcagtatgtcagttgcatctttcaactccagaatttctgcttgatttcaaaaaattatttcaatctctttgttaaatgtg-ttgataggattctgaattgcttctctgtgttatcttgaatttccttgagtttcctcaaaacagctattttgaattctctg-aaagatcacatatctccgtctttctggaattggctcctggtgacgtatttatttggtgaagccatgttttcctggagagtcttgatgcttgtggatgtttggtagtgtctgcacattgaagagttaggaagtgtcatctttgccgttgggcttgtttgtatccatcctttctgagaaagctttccaggtattccaagggactta------ggtgttgtggtctaagccatatctgtattagggggcaccccaagcccagta--actgtgattcttgcagactcatagaagcactgccttgatggtcttgggtaagagccagaagaattcactggatttacattttgcattttaaatttatcaccatttaatttcatgtaatatgatgccaattcaagtatattgtaaaaactttgtaacaatatatttccatttcctcctcccatattttgtgctactgCCATtcttaggaaaaccccgaactgtttctcctctgcattcacaccaacacaa---caatctacacagaagagttctgagaccccaagtatgtgg-ggctttctccttaccagcaagcgagcagtcacctctgcagcgggcaccagctagacatcctccagttcaattccaactctatctatctggagatggcatcagatc--ccacaaacaggg--cccagcctgcaaggctgccacttccccacccccagacaccagtcgtaagtccaggcctctggaatttcgaatcaactggcttcaagctgggcttcccacag-cccctctatgggtttgattaatttgctggagtggctcacagaactcagggaaaggcttatg----ttaccagtttattatgaaggacattttaaaggacgcagatgggcagctagatgaagagatacacacgggatgaggtctg---------gaagggtcccaagtgcgggagcttctgtcgatgtggagtcagggagggcccccctctccgcacgtgaatgagttcttcaccttttggtcacctttcatgtgttcagctctccagaagcttccaaaccctgtcttcttgggtctttatatggggactttgttggataggcttgattgaagcatgggtgactgtgtggaaatgtgattggac-aaaat-ggtcctaaacccagtaaggccagtgtgttcagattcttcttggcctctc--tgtagccttccttcctccagggtatgggacaaaactctctttggaatgagggtctcatgacccacagtcagagtcctgccgtgggcaggggaaggaagggcaggagaaggtgtgagagagagattctgtttactgtcacaagtgctataagagttatgaaccaggaactgtggatgaaaacatatatgtatGTGTTTCAATGACATGCCACAGTCATAC---GTtcatacagttattttttacatatgttctaaacaccatcatactttgttattatttctgcttaaacagtaaattatttcattaaaaaaattatgaaaagcaaggcaaaagtattttatttttacctgtatatttgccttttctgtcactcttaattctttggtgtTTGGTAACGTGTTTTGTTTGTTTTATCTAGTGATGTACATTGATTTTTGAAGG-----GATAAGTTGCCTGGGGAAAAATTTCACTTTCTGGATTTGTTTAATGATTGTTACGTTCTTCTTCCTCTATTGAATATTCTAGAGCTGGGAAGATATATCAGACATCTATTGTATATACAGTCATCATGAAATAGTTATTTATATACAAATGCCAGCTTTTCAAAAGCTGATGCCCATTTGTATAAGTTTATGCTAGAATTTGCTAATACATTTGTTTCTGAAAGATTTGTGAAATCAgatagtgatctcattaaatcttagtatcagcatggcacatattagatgctaaataaatgctCCTGAGGTCAGTTTTACGATGAGAAGAAACGATGGCTTGGTAGGGCCCCATAAGGAATTTTGGTTTCATTCCCCGTCCCTGACATTCCCACTGGTAGAATAAGTCCTTAGCTTTCACACCTATTTCCTTTTGGCATTCGAAATCAGAACCTCAGAAGCAAAATTAGGCTCCAGTTTTGGTTTAGAGTTTATCTTAGTAAACACAAAATATTGGTGTCAACATCTCCATAAAGAAACATGTTTTAATTGCTGTTAACATGAGAGAATAAGATGAATTCA---------------------Gttcattctttgaacaaactttccccaggcatgtgccttgctgggatctatcacagacaaggagggcacaattag-----------tgccatttctcctgggcactaataggccagggaaaa-aaagatacttccaagcaaaagactccaatatagtgagatgagcttgattttagaggtattacaaggaaccctggcttcacaaggaaaataaggcttagctttgtctgtgcctgagcaaggaggtcgccagagaag---agatgattgggttgagttttgaaggt------------------------------------agggtaggagtttggtatgaagagaaggctattccaggtaaaacgaccagcatttgt-aaaagcaaacagcagctgctttcaactggggatgatttttctggggcacatttggttaagtctgaaggtgttttggttatc
i cerAty1.NW_012000030v1    I 1193 I 309
s chlSab2.chr12             102619889 3630 + 108555830 ttatatttccaccaggaatgtgtgatagtttccattaaatatatgacatccttgctt-tctcatacagaaatatatgcttgtcaatatttggtggttttctg-ggtggtttattttggtaatttttgctatgttaatgggtatgtaatagtatcccattatgattttaatttgcatttccagagaactaatgatgctgagaatcttttcatatgcttattggtg-ttttttatcttcttttgtaaaatatctgttcaaaAAGACGATTTTACCTAGTCTTTTACAACTAAAATTGTGTGgataattatagatttatatcacatgcagttgtaagaaatattccttcgaataaactttccaccccccccccccacctc-----ct---tgtaaggccaataactcttggatttgccacttgaagggtattttctatatcttctaggcctgcttcattctttttcat-ttttttcccttttgtctcct----ctg-------tgtattttcaattagcctgtcttcaagctcactaaatctc----tttttttt---tttgagagagagtcttgctttgtcgaccagactagagtacagtggcccaatctcggctcactggaacctccgccttccaggttcaagcaattctggtgcctcagcctccctagtacctgggattacaggcgcctgtcaccacacctggctaatttttgcatttctaggagagatggagtttcaccatgttggccagggaggtcttgaactcctgatctcaggtgatctgcttgcctcagcctcccaaagtgctgggattacatgggtgaggcaccaagcctggtcccaagctcactaattctttcttcttcatgatcaattctgctattaagagattcagatgcattcttcagtatgtcagttgcatctttcaactccagaatttctgcttgatttcaaaaaattatttcaatctctttgttaaatgtg-ttgataggattctgaattgcttctctgtgttatcttgaatttccttgagtttcctcaaaacagctattttgaattctctg-aaagatcacatatctccatctttctggaattggctcctggggacgtatttatttggtgaagccatgttttcctggagagtcttgatgcttgtggatgtctggtagtgtctgcacattgaagagttaggaagtgtcatctttgccgttgggcttgtttgtacccatcctttctgggacagccttccaggtattccaagggacctgggtgttggtgttgtggtctaagccatatctgtattagggggcaccccaagcccggtaacactgtgattcttgcagactcatagaagcactgccttgatggtcttggataagagccagaagaattcactggatttacgttttgcattttaaacttatcaccatttaatttcatgtaatatgatgccaattcaagtatattgtaaaaactttgttacaatatatttccatttcctcctcccatattttgtgctactgCCATtcttaggaaaaccccgaactgtttctcctctgcattcacaccaacacaa---caatctacacagaagagttctgagaccccaagtatgtgg-ggctttctcctcaccagcaagggagcagtcacctctgcagcgggcaccagct-gacatcctccagttcaattccaactctatctatctggagatggcatcagatc--ccacaaacaggg-----agcctgcaaggctgccacttccccacccccagacaccagttgtaagtccaggcctctggaatttctaatcaactggcttcaagctgggcttcccacag-cccgtctatggatttgattaatttgctggagaggctcacagaactcagggaaaggcttatgtcatttaccagtttattatgaaggacattttaaaggacgcagatggacagctagatgaagagatacacacgggatgaggtctg---------gaagggtcccaagtgcgggagcttctgtccatgtggagtcagggaggg-ccccctctccgcacgtgaatgagttcttca-tttttagttacccatcatgtgttcagctctccagaagcttccaaaccctgtcttcttgggtctttatatggggactttgttggataggcctgattgaagcatgggtgactgtgtggaaatgtgattggac-aaaat-ggtcctaaacccagtaaggccggtgtgttcagactcttcttggcctctc--tatagccttccttcctccagggtatgggacaaaactctctttggaatgagggtctcatgacccacagtcagagtcctgccgtgggcaggggaaggaagggcaggagaaggtgtgtgagagagattctgtttgctgtcacaagtgctataagaattatgaaccaggaactgtggatgaaaacatgtatgtgtGCGTTTCAATGACATGTCACAGCCATACTTTATtcattcagttg-tttctacatatgttctaaacaccatcatactttgttattatttttgcttaaacagtaaattatttc--caaaaaaattatgaaaagcaagacaaaagtattttatttttacctgtatatttgccttttctgtcactcttaattctttggtgtTTGGTAATGTGTTTTGTTTGTTTTATCTAGTGATGTACATTGATTTTTGAAGGGATAAGATAAGTTGCCTGGGGAAAAATTTCACTTTCTGGATTTGTTTAATGATTGTTATGTTCTTCTTCCTCTATTGAATATTCTAGAGCTGGGAGGATATATCAGACATCTATTGTATATACAGTCATCATGAAA----TATTTATATACAAATGCCAGCTTTTCAAAAGCTGATGCCCATTTGTATAGGTTTATGCTAGAATTTGCTAATACATTTGTTTCAAAAAGATTTGTGAAATCAgatagtgatctcattaaatcttagtatcagcatggcacatattagatgctaaataaatgctCCTGAGGTCAGTTTTACGATGAGAAGAAACGATGGCTTGGTA-GGCCCCATAAGGAATTTTGATTTCATTCCCCATCATTGACATTCCCACTGGTAGAATAGGTCCTTGGCTTTCACACCTATTTCCTTTTGGCATTCGAAATCAGAACCTCAGAAGCAAAATTAGGCTCCAGCTTTGGTTTAGAGTTTATCTTAGTAAACACAAAATATTGGTGTCAACATCTCCATAAAGGAACATGTTTTAATTGCTGTTAACATGAGAGAATAAGATGAATTCA---------------------GTTCATTCTTTGAACAAACTTTACCCAGGCGTGTGCCTTGCTAGGATCTATCCCAGACAAGGAGGGCACAATTAG-----------TGCCATTTCTCCTGGGCACTAATAGGCTAGGGAAAAGAAAGATACTTCCAAGCAAAAGACTCCAATATAGTGAGATGAGCTTGATTTTAGAGGTATTACAACGAACCCTGGCTTCACAAGGAAAATAAGgcttagctctgcctgtgcctgagcaaggaggtcgccagagaag---agatgattgggttgagttttgaaggt------------------------------------agggtaggagttcggtatgaagggaaggttattccaggtaaaacgaccagcatttgt-aaaagcaaacagcagctgctttcaactggggatgatttttctggggcacatttggttaagtctgaaggtgttttggttatc
i chlSab2.chr12             I 1146 I 311
s manLeu1.NW_012104154v1      2114871 3612 +   2144893 ttatatttccaccaggaatgtgtgatagtttccattaaatatatgacatccttgctt-tctcatacagaaatgtatgcttgtcaatatttggt-gttttcct-ggtggtttattttggtaatttttgctatgttaatgggtatgtagtagtatcccattatgattttaatttgcatttccagagaactaatgatgctgagaatcttttcatatgcttattggtc-ttttttatcttcttttgtaaaatatctgttcaaaAAGACGATTTTACCTAGTCTTTTACAACTAAAATTGTGTGgataattatagatttatatcacatgcagttgtaagaaatatcccttcgaataaactttccacccctctctctctctct-----ct-------acctcagtaactcttggatttgccacttgaagggtattttctagatcttctaggcctacttcattctttttcat-ttttttcccttttgtctcct----ctg-------tgtattttcaattagcctgtcttcaagctcactaaatctc----tttttttt---tttgagacagagtcttgctctgtcgaccagactagagtacagtggcccaatctcggctcactgcaacctccgccttccaggttcaagcaattctggtgcctcagcctccctagtacctgggattacaggcgcctgtcaccacacctggctaatttttgcatttctaggagagatggggtttcaccatgttggccagggaggtcttgaactcctgatctcaggtgatctgcctgcctcagcctcccaaagtgctgggattacatgcgtgaggcactgggcctggccccaagctcactaattctttcttcttcatgatcaattctgctattaagagattcagatgcgttcttcagtatgtcagttgcatctttcaactccagaatttctgcttgatttcaaaaaatcatttcaatctctttgttaaatgtg-ttgataggattctgaattgcttctctgtgttatcttgaatttccttgagtttcctcaaaacagctattttgaattctctg-aaagatcacata----------tctggaattggctcctggtgacatatttatttggtgaggccatgttttcctggagagtcttgatgcttgtggatgtttggtagtgtctgcgcattgaagagttaggaagtgtcatctttgccgttgggcttgtttgtatccatcctttctgagaaagctttccaggtattccaagggacttg------ggtgttgtggtctaagccgtatctgtattagggggcaccccaagcccagta--actgtgattcttgcagactcacagaagcactgccttgatggtcttgggtaagagccagaagaattcactggatttacattttgcattttaaatttatcaccatttaatttcatgtaatatgatgccaattcaagtatattgtaaaaactttgtaacaatatatttccatttcctcctcccatattttgtgctactgCCATtcttaggaaaaccccaaactgtttctcctctgcattcacaccaacacaa---caatctacacagaagagttctgagaccccaagtatgtgg-ggctttctcctcaccagcaagcgagcagtcacctctgcagtgggcaccagctggacatcctccagttcaattccaactctatctatctggagatggcatcagatc--ccacaaacaggg--cccaacctgcaaggctgccacttccccacctccagacaccagtcgtaagtccaggcctctggaatttctaatcaactggcttcaagctgggcttcccacag-cccctctatgggtttgattaatttgctggagtggctcacagaactcagggaaaggcttatg----ttaccagtttattatgaaggacattttaaaggacgcagatgggcagctagatgaagagatacacacgggatgaggtctg---------gaagggtcccaagtgcgggagcttctgtccatgtggagtcagggagggcccccctctccgcacgtgaatgagttcttca-tttttagttacccatcatgtgttcagctctccagaagcttccaaaccctgtcttcttgggtctttatatggggactttgttggataggcctgattgaagcatgggtgactgtgtggaaatgtgattggac-aaaat-ggtcctaaacccagtaaggccggtgtgttcaggttcttcttggcctctc--tgtagccttccttcctccagggtatgggacaaaactctctttggaatgagggtctcatgacccacagtcagagtcctgccatgggcaggggaaggaagggcaggagaaggtgtgagagagagattctgtttactgtcacaagtgctataagagttatgaaccaggaactgtggatgaaaacatgtatgtgtGCGTTTCAATGACATGTCACAGCCATACTTTATtcattcagttg-tttctacatatgttctaaacaccatcatactttgttattatttctgcttaaac--taaattatttcattaaaaaaattatgaaaagcaaggcaaaagtattttatttttacctgtatatttgccttttctgtcacccttaattctttggtgtTTGGTAACGTGTTTTGTTTGTTTTATCTAGTGATGTACATTGATTTTTGAAGGGATAAGATAAGTTGCCTGGGGAAAAATTTCACTTTCTGGATTTGTTTAAGGATTGTTACGTTCTTCTTCCTCTATTGAATATTCTAGAGCTGGGAGGATATATCAGACATCTATTGTATACACAGTCATCATGAAATAGTTATTTATATACAAATGCCAGCTTTTCAAAAGCTGATGCCCATTTGTATAAGTTTATGCTAGAATTTGCTAATACATTTGTTTCTGAAAGATTTGTGAAATCAgatagtgatctcattaaatcttagtatcagcatggcacatattagatgctaaataaatgctCCTGAGGTCAGTTTTACGATGAGAAGAAACGATGGCTTGGTAGGGCCCCATGAGGAATTTTGGTTTCATTCCCCGTCCCTGACATTCCCACTGGTAGAATAGGTCCTTGGCTTTCACACCTATTTCCTTTTGGCATTCGAAATCAGAACCTCAGAAGCAAAATTAGGCTCCAGCTTTGGTTTAGAGTTTATCTTAGTAAACACAAAATATTGGTGTCAACATCTCCATAAAGGAACATGTTTTAATTGCTGTTAACATGAGATAATAAGATGAACTCA---------------------Gttcattcgttgagcaaactttccccaggcgtgtgccttgctaggatctatcacagacaaggagggcacaattag-----------tgccatttctcctgggcactaataggccagggaaaa-aaagatacttccaagcaaaagactccaatatagtgagatgagcttgattttagaggtattacaaggaaccctggcttcacaaggaaaataaggcttagctctgcctgtgcctgagcaaggaggtcgccagagaag---agatgattgggttgagttttgaaggt------------------------------------agggtaggagtttggtatgaagggaaggctattccaggtaaaacgaccagcatttgt-aaaagcaaacagcagctgctttcaactggggatgatttttctggggcacatttggttaagtctgaaggtgttttggttatc
i manLeu1.NW_012104154v1    I 1169 C 0
s colAng1.NW_012115910v1      6769684 3685 -   6934359 ttatacttccaccagaaatgtgtgatagtttccattaaatatatgacatccttgctc-tctcttacagaaatgtatgcttgccaatatttggt-atttttctgggcgctttattttgctaattttggctatgttaatgggtatgtagtagtatctcattatgattttcatttgcatttccagagaactaatgatgctgagaatcttttcatgtgctcattggtc-ttttttatcttcttttgtgaaatatctgttcaaaAAGGCTATATTACCTAGTCTTTTATAACTAAAATTGTGTGTACAATTTTGGATTCATGTCACATGCAGTTGTAAGACACatccctttgaataaactatctacccctatctctctctctacctcct---tgtaaggccaataactcttggatttgccacttgaagggtattttctagattttctaggtctgcttcattctatttcatttttttccccttttgtctcctctgactg-------tgtattttcaattagcctgtcatcaagctcactaa--------ttttttttt---ttaaagacaaagtcttgctctgtctcccaggctagagtacagtggcccaatctcagctcactgcaacctccaccttctaggttcgagcaattctcatgcctcaacctccctagtacctgggattacagatgcccatcaccacacctggctaatttttgtatttttattagagatggggtttcaccatgttgaccagggaggtcttgaactcctgatctcaggtgatctgcctgactcagcctcccaaaatgctgggattacatgcgtgagtcacagggcctgaccccaagctcactaattatttcttcttcatgatcaattctgctattaagagattcagatgcattcttcagtatgtcaattgcatttttcaactccagaatttctgcttgatttttaaaaattatttcaatctgtttgttaaatgtgtttgctaggattctgaattgcttctctgtgtcatcttgaatttccttgagttttctcaaaagagctattttgaattctctgaaaaaatcacatatc----tctttctggaattggctcctggtgactcatttatttgatgagcccatgttttcctggagagttttgaggcttgtggatatttggtagtgtctgggcattgaagagttaggaagtgtcatctttgcagttgggcttgtttgtacccatcctttctgggaaagctttccaggtattccaaggggcttg------ggtgctgtggtctaagctacatctgtattagggggcaccccaagcccggtaacactgtgattcttgcagactcatagaagttccgccttggtggtcttggataaaagccagaagaattctctagatttatattttgcattttaaacttatcaccatttaatttcatataatatgataccaatttgtgtatgttgtaaaaaccttgcaataatatatttctatctcctcctcccatcttttatgctactgtCATTCttaggaaaaaccagacctgtttctcctctgcgtccacaccaacacaa---caatgtacacagaagacttctgagaccccgagtaggtggtggctttctcctcaccagcaagcaagcagtcacttctgtagcaggcaccagctggacatcctccagttcaattccaactctgtctacccagagatggtgtcagatc--ccacaaagagaagtcccaatctgcaaggctgccacttccccacccccaaacacaagtcgtaagtccaggccgctggaatttgtaatcagctggcttcaagctgggtttcccacaatcccctctatgggtttggttaatttgctggagcggctcacagaactcagggaaatgcttatgttgttttccagtttcttatgaaagacattgtaaaggatacagatgggcagtcagatgaagagacacacacgggatgaggtctggaagattttgaagggtcccaagtgcaggagctggtgtccgtgtggagtcagggagcaccaccctctcagcacgtggatgagttcttcaccttttggtcacctttcatgtgttcagctctccagaagcttccaaaccctgtcttcttgggtctttatatggggaatttgttacttaggcctgactgaagcatgggtgac--tatggaaatgtgattggacaaaaac-agttctaaacccagcaagtcctgtatattcagattcttcttggcttctctgtgtagccttccttcctcca-ggtatgggacaaaaccctctttggaatgagggtctcatgaccca----cagaatcctgtcatgggcaggggaaagaaaagcaggagaaggtgtgagagagggattctgtttattgtcacaagggctatgagagttatgaacaaggaactgtggatgaaaacatatatgtgtGTGTTTCAATGACATGCCACAGTCATAC---GTtcatacagttattttctacatatgttctaaacaccatcatgctttgttattatttttgcttaaacagtaaattcttttat---aaaaattacgaaaagcaagataaaagtattttatatttacctgtatgtttaccttttctggta---ttaattctttagtgtTTGGTAATGTGT----TTTGTTTTGTGTAGTGATTTACATTGATTTTTGAAGGGATAAGATCAGTTGCCCGAGAAAAA--TTCGCTTTCTGGATTTGCTTAATAATTTTTATGTTCTTATTCCTCTATCAAATATTCTAGAGCTGGAAGAATATATCAGACATCTATTGCACATAGAGTCATCATGAAATAGTAATTTATGT-CAAATGCCAGCTTTTCACAAGTTGATGCCAATTTGTATATATTTATGCTAGAATTTGCTAATATGTTTGTTTCAGAAAGATTTGGGAAATCAGATAGTGATCTCATTAAATCTTAGTAT-AGCAAGGCACATATTAGACCCTAAATAACTGCTCCTGAGGCCAGTTTTATGATGAGAAGAAATGATGGTCTGGTAGGGCCCCATAAGAAATTTTAATTTTATTCCCCATCATTGACATTCCCACTGGTAGAATAACTCCTTAGCTTTCACACCTATTTCCTTTTGGCATTCGAAATCAGAACCCCAGAAGCAAAATTAGGCTCCAGTTTTGGTTTAGAGTTTATCTTAGTAAACACAAAATATTGGTGTCAACATCACCACAAAGGAAAATGTTTTGATTGCCATTAACATGAGAGAATAAGATGAATTCA---------------------GTTCATTCTTTGAACAAACTTTCCCCAGGTGTGTGCCTTGTTAGGATCTACCCCAGACAGGGAGGGCACAAAGAAGCCATGATCTCTGCTATTTCTCCTGTGCACTAATAGGACATGGCAAGGAAAGATACTTCCAAGCCAAAGACTCCAATATGGTGCGATGAACTTGATTTTAGAGGTATTACAAGGAATGCTGACTTCACAAGGAAAATAAGGCTTAGCTCTGCCTGTGCCTGAGCAAGGAGGTTGCCAGAGAAGAATAAATGACTAGGTTGAGTTTTGAAGCTTTgaagatgactgggttgaagttttgaagagatgactgggtaggagttcagtatgaagggaaggttattccaggtaaaaggaccagcatttgtaaaAAGCAAAAAGCGGCTgctttcaactggggatgatttttcaggggcacatttggtaatgtccgaaggtgttttggttatc
i colAng1.NW_012115910v1    I 1168 C 0
e nomLeu3.chr6               75903756    0 + 121039945 C

a score=20732.000000
s hg38.chr15_KI270851v1_alt     26525 7 +    263054 aaaactg
s gorGor5.CYUI01000350v1        29821 7 -    142253 aaaactg
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108345116 7 + 111343173 aaaactg
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106256391 7 + 112612857 aaaactg
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22636699 7 +  28977278 aaaactg
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1905848 7 +   8072957 aaaactg
i cerAty1.NW_012000030v1    I 309 C 0
s chlSab2.chr12             102623830 7 + 108555830 aaaactg
i chlSab2.chr12             I 311 C 0
s manLeu1.NW_012104154v1      2118483 7 +   2144893 aaaattg
i manLeu1.NW_012104154v1    C 0 I 306
s colAng1.NW_012115910v1      6773369 7 -   6934359 aaaactc
i colAng1.NW_012115910v1    C 0 C 0
e nomLeu3.chr6               75903756 0 + 121039945 C

a score=4098553.000000
s hg38.chr15_KI270851v1_alt     26532 1387 +    263054 gggggtgggtatgctattggcacgtggtgggtagaggccaggtttgctgctaacatcctacagcacacaggccaggcccctacaacacagctctccagccccgagcataaataatacggagattgagagaccccgATGGGAGGCATGAAGCAGTGTGGCTTGTTCTGAAAACTGTGTTTTGTGTGGTTGGAGTGAAGTGTGCGGTGGATTGGTGAGGAAGGAGAATCCAAGGAAAACTGGAGGACCTGAGACCCAACAAATGGACTGGATGCTGAAGCTGCTGCTCCATGGCTCGAATCTCACCCCGAAGGAGACAGGAGCCACAGCAGTCCTTTTGGAGAACCAATATCAGCAGCACTCACATACGGAAAGATTACCCTGGCAGTAATGCCTAGATGGATGGCAGAGCAGGGAGGCGGCTGCAGTAATTCAGGGCAGAAATGGGGAGGGCTTTAAAGAAGAACAGTGAGACTTAGTGATCCTCTGACTGCAAGGAAGATGAAGGCACAGATGGCCGCTGAGTTCCTCGCGTGATGGCTGGGTGACTGTCCTCACTCACTGAGGCCAGAAACACAGCACAGAGGAGCAGGCTTCTGGAGAAAGGTGCTGAGC-TTGAAAGGTGAAAGACATCTTGAGAATGAATAATATATCTAAGATAGCCCATGTGTGGACAACAGGGCCAGGAGGAAAATTCAGGGCTCTGCTGTTCTCTCTGTCGCAGTAAATGACCAGAAACTTCATAACAAAAGATTCACTGGGAAAACCCAGAGGAAGTTACAGCCAAGCA---AAATGCAGCTTGCTTTCGGCTTCCTCATCCCCTTTTCAGAGACTTGCCT-GGTGCTCCCA-AGTCTCAACAGCGCTAGTGGGAATGCAGCCAAACAATAAGGCTA--TTTTTTCTATACCATGTTGTTTCATTCTTTGGCTACTGTAATCTATATTATCAATTCTCTGAATTTTTTCCGTGCAAAGGAGAAATAAGTTGTTAATAAGTCAATGGACAACAAAGTTGACATTAACTCTCTGCAAAACTACAAATGTGAGTCCACATACTCATGAGCGTTGTGGGTGGACAGGCTGTGCTGCCTCTACGGGGCCCTCCTGCTTCGGCTCAAGGGCCAAGGAAGAGTACACCCCAGGGAAGACTTCACCTGGCCCAGGGTCCAGGGTTTCAGGCA------TGTGGATGCGATGTAGGAGCGGTAAGACCATTCAGGTCTCACTCAACTCCACTTCTCCTTCCTCCCCGCTCTGTGACACCTTCCTGTCCTCCTCACTCCTTCCAGAACAACAGAAAATGAGAAGGTTTCAGGTGATCTGTTTAGGAACCAACCACCTTGCTTTACAATGGCTTCTGTAGGGGGGTTCAAGGTCTGTGTGTCTAAATGTAGTC
s gorGor5.CYUI01000350v1        29828 1382 -    142253 gcgg-tgggtatgctattggcacgtggtgggtagaggccaggtatgctgctaacatcctacagcacacaggccaggccccta-aacacagctctccagccctgagcataagtaatacggagattgagagaccctgATGGGAGGCATGAAGCAGTGTGGCTTGTTCTGAAAACTGTGTTTTGTGTGGTTGGAGTGAAGTGTGCGGTGGATTGGTGAGGAAGGAGAATCCAAGGAAAACTGGAGGACCTGAGACCCAACAAATGGACTGGATGCTGAAGCTGCTGCTCCATGGCTCGAATCTCACCCCGAAGGAGACAGGAGCCACAGCAGTCCTTTTGGAGAACCAATATCAGCAGAACTCACATACAGAAAGATTACCCTGGCAGTAATGCCCAGATGGATGGCAGAGCACGGAGGCGGCTGCAGTAATTCAGGGCAGAAATGGGGAGGGCTTTAAAGAAGAACAGTGAGGCTTAGTGATCCTCTGACTGCAAGGAAGATGAAGGCACAGATGGCCGCTGAGTTCCTCGCGTGATGGCTGGGTGACTGTCCTCACTCACTGAGGCCAGAAACACAGCACAGAGGAGCAGGCTTCTGGAGAAAGGTGCTGAGC-TTGAAAGGTGAAAGACATCTTGAGAATGAATAATATATCTAAGATAGCCCATGTGTGGACAACAGGACCAGGAGGAAAATTCAGGGCTCTGCTGTTCTCTCTGTCGCAGTAAATGACCAGAAACTTCATAACAAAAGATTCACTGGGAAAACCCAGAGGAAGTTAGAGCCAAGCATTCAAATGCAGCTTGCTTTCGGCTTCCTCATCCCCTTTTCAGAGACTTGCCT-GGTGCTCCCA-AGTCTCAACAGCGCTAGTGGGAATGCAGCCAAACAATAAGGCTA--TTTTTTCTATACCATGTTGTTTCATTCTTTGGCTACTGTAATCTATATTATCAATTCTCTGAATTTTTTCCATGCAAAGGAGAAATAAGTTGTTAATAAGTCAATGGACAACAAAGTTGACATTAATTCTCTGCAAAACTACAAATGTGAGTCCACATACTCATGAGCGTTGTGGGTGGACAGGCTGTGCTGCCTCTACGGGGCCCTCCTGCTTCGGCTCAAGGGCCAAGGAAGAGTAC-CCCCAGGGAAGACTTCACCTGGCCCAGGGTCCAGGGTTTCAGGCA------TGTGGATGCGATGTA-GAGTGGTAAGACCATTCAGGTCTCACTCAACTCCACTTCTCCTTCCTCCTCGCTCTGTGACACCTTCCTGTCCTCATCACTCCTTCCAGAACAACAGAAAATGAGAAGGTTTCAGGTGATCTGTTTAGG----AACCACCTTGCTTTACAATGGCTTCTGTAGGGGGGTTCAAGGTCTGTGTGTCTAAATGTAGTC
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108345123 1372 + 111343173 gggggtgggtatgctattggcatgtggtgggtagaggccaggtctgctgctaacatcctacagcgcacagtccaggcccctacaacacagctctccagccccgagcgtaaataacgcagagactgagagaccctgatgggaggcatgaagcactgtggcttgttctgaaaactgtgttttgtgtggt-----tgaagtgtgcggtggattggtgaggaaggagagtccgaggaaaactggagGACCTGAGACCCAGCAAATGGACTGGGTGCTGCAGCTGCTGCTCCTCGGCTCGGATCTCACCCTGAAGGAGACAGGAGTCACCGCAGTGCTTTTGGAGAACCAACATCAGCAGCACTCACACATGGCAAGGTTGCCCTGACAGTAATGCCCAGATGGATGGCAGAGCAGGGAGGCAGCTGCGGTAATTCAGGGCAGAGATGGGGAGGGTTTTAAAGAAGAGCAGTGAGACTTGGTGACCCTCTGACTGCAAGAAAGATGAAGTCACGGATGGCTGCTGGGTTCCTAGCGTGACGGCTGGGTGACTGTCCCCACGCACTGAGGCCAGCAACACCGCACAGAGGAGCAGGCTTCTGGCGGAAGGTGCTGAGCTTTGGAAGGTGAAACACATCTTGAGAATGAATAACGTGTCTAAGGTCGCCCGTGTGTGGACGACAGGGCCAGGAGGAAAACTCAGGGCTCTGTTGTTCTCTCTCTCGCAGTAAGTGACCAGAAACTTCGTAACAAAAGATTCACTGGGAAAATCCAGAGGAAGTTAGAGCCCAGCATCCAAACGTAGCTTGCTTTCGGCTTCCTCATCCCCTTTTCGGAGTCTTGCCTGGGTGCTCCCAAAGTCTCGACAGCACTAGTGGGAATGCGGCCAAACAATAAGGCTA--TTTTTTCTATACCACCGTGTTTTATTCTTTGGCTACTCTAATCTGTATCATCAATTCTCTGATTTTTTTCCGTGCAAAGGAGAAA----TAGTTAATAAGTCGATGGACAATGAAGTTGGCATTAATCCTCTGCAAAACTGCAAATGTGAGCTCACATACTCATGAGGCTTGTGCGTGGACAGGCTGTGCTGCCTCTGCGGGGCCCTCCTGCTTCTGCTCAAGGGCCAAGGAACAGTGCACCCCAGGGAAGCCTTCACCTGGCCCGGGGCCCGGGGTTTCAAGTG------TGTG-----GATGTAGGAGCGGTAAGACCGTTGAGGTCTCACTCAACTCCACTT---CTTGCTCCCCGCTCTGTGCCACCTTCCAGTCTTCCACACTCCTTTGAGAACAACAGAACAGGAGAAGGTCTCAGGTGAGCTGTTTAGG----AACCACCTTGCTTTACAATGGCTTTTATAAGGGATTTCAAGGTCTGTACGTACAAATGTAGAC
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106256398 1372 + 112612857 gggggtgggtatgctattggcacgtggtgggtagaggccaggtctgctgctaacatcctacagcgcacagtccaggcccctacaacacagctctccagccccgagcgtaaataacgcagagactgagagaccctgatgggaggcatgaagcactgtggcttgttctgaaaactgtgttttgtgtggt-----tgaagtgtgcggtggattggtgaggaaggagagtccaaggaaaactggagGACCTGAGACCCAGCAAATGGACTGGGTGCTGCAGCTGCTGCTCCTCGGCTCGGATCTCACCCCGAAGGAGACAGGAGTCACCGCAGTGCTTTTGGAGAACCAACATCAGCAGCACTCACCCATGGCAAGGTTGCCCTGACAGTAATGCCCAGATGGATGGCAGAGCACGGAGGCAGCTGCGGTAATTCAGGGCAGAGATGGGGAGGGTTTTAAAGAAGAGCAGTGAGACTTGGTGACCCTCTGACTGCAAGAAAGATGAAGTCACGGATGGCTGCTGGGTTCCTAGCGTGACGGCTGGGTGACTGTCCCCACGCACTGAGGCCAGCAACACCGCACAGAGGAGCAGGCTTCTGGCGGAAGGTGCTGAGCTTTggaaggtgaaacacatcttgagaatgaataacgtgtctaaggtcgcccgtgtgtggacgacagggccaggaggaaaactcagggctcTGTTGTTCTCTCTCTCGCAGTAAGTGACCAGAAACTTCGTAACAAAAGATTCACTGGGAAAATCCAGAGGAAGTTAGAGCCCAGCATCCAAACGTAGCTTGCTTTCGGCTTCCTCATCCCCTTTTCGGAGTCTTGCCTGGGTGCTCCCAAAGTCTCGACAGCACTAGTGGGAATGCGGCCAAACAATAAGGCTA--TTTTTTCTATACCACCGTGTTTTATTCTTTGGCTACTCTAATCTGTATCATCAATTCTCTGATTTTTTTCCGTGCAAAGGAGAAA----TAGTTAATAAGTCGATGGACAATGAAGTTGGCATTAATCCTCTGCAAAACTGCAAATGTGAGCTCACATACTCATGAGGCTTGTGCGTGGACAGGCTGTGCTGCCTCTGCGGGGCCCTCCTGCTTCTGCTCAAGGGCCAAGGAACAGTGCACCCCAGGGAAGCCTTCACCTGGCCCGGGGCCCGGGGTTTCAAGTG------TGTG-----GATGTAGGAGCGGTAAGACCGTTGAGGTCTCACTCAACTCCACTT---CTTGCTCCCCGCTCTGTGCCACCTTCCAGTCTTCCACACTCCTTTGAGAACAACAGAACAGGAGAAGGTCTCAGGTGAGCTGTTTAGG----AACCACCTTGCTTTACAATGGCTTTTATAAGGGATTTCAAGGTCTGTACGTCCAAATGTAGAC
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22636706 1372 +  28977278 gggggtgggtatgctattggcacgtggtgggtagaggccaagtctgctgctaacatcctacagcgcacagtccaggcccctacaacacagctctccagccccgagcgtaaataacgcagagactgagagaccctgatgggaggcatgaagcactgtggcttgttctgaaaactgtgttttgtgtggt-----tgaagtgtgcggtggattggtgaggaaggagagtccaaggaaaactggagGACCTGAGACCCAGCAAATGGACTGGGTGCTGCAGCTGCCGCTCCTCGGCTCGGATCTCACCCCGAAGGAGACAGGAGTCACCGCAGTGCTTTTGGAGAACCAACATCAGCAGCACTCACACATGGCAAGGTTGCCCTGACAGTAATGCCCAGATGGATGGCAGAGCAGGGAGGCAGCCGCGGTAATTCAGGGCAGAGATGGGGAGGGTTTTAAAGAAGAGCAGTGAGACTTGGTGACCCTCTGACTGCAAGAAAGATGAAGTCACGGATGGCTGCTGGGTCCCTAGCGTGACGGCTGGGTGACTGTCCCCACGCACTGAGGCCAGCAACACCGCACAGAAGAGCAGGCTTCTGGCGGAAGGTGCTGAGCTTTGGAAGGTGAAACACATCTTGAGAATGAATAACGTGTCTAAGGTCGCCCGTGTGTGGACGACAGGGCCAGGAGGAAAACTCAGGGCTCTGTTGTTCTCTCTCTCGCAGTAAGTGACCAGAAACTTCGTAACAAAAGATTCACTGGGAAAATCCAGAGGAAGTTAGAGCCCAGCATCCAAACGTAGCTTGCTTTCGGCTTCCTCATCCCCTTTTCGGAGTCTTGCCTGGGTGCTCCCAAAGTCTCGACAGCACTAGTGGGAATGCGGCCAAACAATAAGGCTA--TTTTTTCTATACCACCGTGTTTTATTCTTTGGCTACTCTAATCTGTATCATCAATTCTCTGATTTTTTTCCGTGCAAAGGAGAAA----TAGTTAATAAGTCGATGGACAATGAAGTTGGCATTAATCCTCTGCAAAACTGCAAATGTGAGCTCACATACTCATGAGGCTTGTGCGTGGACAGGCTGTGCTGCCTCTGCGGGGCCCTCCTGCTTCTGCTCAAGGGCCAAGGAACAGTGCACCCCAGGGAAGCCTTCACCTGGCCCGGGGCCCGGGGTTTCAAGTG------TGTG-----GATGTAGGAGCGGTAAGACCGTTGAGGTCTCACTCAACTCCACTT---CTTGCTCCCCGCTCTGTGCCACCTTCCAGTCTTCCACACTCCTTTGAAAACAACAGAACAGGAGAAGGTCTCAGGTGAGCTGTTTAGG----AACCACCTTGCTTTACAATGGCTTTTATAAGGGATTTCAAGGTCTGTACGTCCAAATGTAGAC
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1905855 1376 +   8072957 gggggtgggtatgctattggcacgtggtgggtagaggccaggtctgctgctaacatcctacagcgcacagtccaggcccctacaacacagctctccagccccgagcgtaaataacgcagagactgagagaccctgatgggaggcatgaagcactgtggcttgttctgaaaactgtgttttgtgtggt-----tgaagtgtgcggtggattggtgaggaaggagagtccagggaaaactgg-ggaCCTGAGACCCAACAAATGGACTGGGTGCTGAAGCTGCTGCTCCTCGGCTCAGATCTCACCCCAAAGGAGACAGGAGCCACCACAGTGCTTTTGGAGAACCAACATCAGCAGCACTCACATATGGCAAGGTTGCCCTGACAGTAATGCCTAGATGGATGGCAGAGCAGGCAGGCAGCTGCAGTAATTCAGGGCAGAAATGGGGAGGGCTTTAAAGAAGAACAGTGAGACTTGGTGACCCTCTGACTGTAAGAAAGATGAAGTCACAGATGGCCGCTGGGTTCCTAGCGTGACGGCTGGGTGACTGTCCCCACGCACTGAGGCCAGCAACACAGCACAGAGGAGCAGGCTTCTGGCGGAAGGTGCTGAGCTTTGGAAGGTGAAAGACATCTTGAAAATGAATAACATATCGAAGGTCGCCCGTGTGTGGACGACAGGGCCAGGAGGAGAACTCAGGGCTCTGTTGTTCTCTCTCTTGCAGTAAGTGACCAGAAACTTCGTAACAAAAGATTCACTGGGAAAATCCAGAGGAAGTTAAAGCCAAGCATCCAAACGTAGCTTGCTTTCGGCTTCCTCATCCCCTTTTCAGAGTCTTGCCTGGGTGCTCCCAGAGTCTCAACAGCACTAGTGGGAATGCAGCCAAACAATAAGAGTACTTTTTTTCTATACCTTGGTGTTTTATTCTTTGGCTACTCTAATCTGTATCATCAATTCTCTGATTTTTTTCCATGCAAAGGAGAAA----TAGTTAATAAGTCAATGGACAATAAAGTTGGCATTAATCCTCTGCAAAACTGCAAATGTGAGCTCACATACTCATGAGGCTTGTGCGTGGACAGGCTGTGCTGCCTCTACGGGGCCCTCCTGCTTCTGCTCAAGGGCCAAGGAACAGTGCACCCCAGGGAAGCCTTCACCTGGCCTGGGGCCCGGGGTTTCAAGTG------TGTG-----GATGTAGGAGTGGTGAGACCGTTGAGGTCTCACTCAACTCCACTTCTCCTTGCTCCCCGCTCTGTGCCACCTTCCAGTCTTCCACACTCCTTTAAGAACAACAGAACAGGAGAAGGTCTCAGGTGAGCTGTTTAGG----AACCACCTTGCTTTACAATGGCTTCTGTAGGGGGTTTCAAGTTCTGTATGTCCAAATGTAGAC
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102623837 1372 + 108555830 gggggtgggtatgctattggcacgtggtgggtagaggccaggtctgctgctaacatcctacagtgcacagtccaggcccgtacaacacagctctccagccccgagcgtaaataacgcagagactgagagaccctgacgggaggcatgaagcactgtggcttgttctgaaaactgtgttttgtgtggt-----tgaagtgtgcggtggattggtgaggaaggagagtccaaggaaaactggagGACCTGAGACCCAGCAAATGGACTGGGTGCTGAAGCTGCTGCTCCTCGGCTCGGATCTCACCCCGAAGGAGACAGGAGTCACCGCAGTGCTTTTGGAGAACCAACATCAGCAGCACTCACACATGGCAAGGTTACCCTGACAGTAATGCCCAGATGGATGGCAGAGCAGGGAGGCAGCTGCAGTAATTCAGGGCAGAGATGGGGAGGGTTTTAAAGAAGAACAGTGAGACTTGGTGACCCTCTGACTGCAAGAAAGATGAAGTCACAGATGGCCGCTGGGTTCCTAGTGAGACGGCTGGGTGACTGTCCCCACGCCCTGAGGCCAGCAACACAGCACAGAGGAGCAGGCTTCTGGCGGAAGGTGCTGAGCTTTGGAAGGTGAAAGACATCTTGAAAATGAATAACATGTCTAAGGTCGCCGGTGTGTGGATGACACGGCCAGGAGGAAAACTCAGGGCTCTGTTGTTCTCTCTCTTGCAGTAAGTGACCAGAAACTTGGTAACAAAAGATTCACTGGGAAAATCCAGAGGAAGTTAGAGCCCAGCATTCAAACATAGCTTGCTTTCAGCTTCCTCATCCGCTTTTCGGAGTCTTGCCTGGGTGCTCCCAAAGTCTCGACAGCACTAGTGGGAATGCAGCCAAACAATAAGGCGA--TTTTTTCTATACCACGGTGTTTTATTCTTTGGCTACTGTAATCTGTATCATCAATTCTCTGATTTTTTTCCATGCAAAGGAGAAA----TAGTTAATAAGTCAATGGATAATAAAGTTGGCATTAATCCTCTGCAAAACTGCAAATGTGAGCTCACATACTCATGAGGCTTGTGCGTGGACAGGCTGTGCTGCCTCTGCGGGGCCCTCCTGCTTCTGCTCAAGGGCCAAGGAACAGTGCACCCCAGGGAAGTCTTCACCTGGCTCGGGGCCCGGGGTTTCAAGTG------TGTG-----GATGTAGGAGCGGTAAGACCCTTGAGGTCTCACTCAACTCCACTT---CTTGCTCCCTGCTCTGTGCCACCTTCCAGTCTCCCACACTCCTTTGAGAACAACAGAAAATGAGAAGGTCTCAGGTGAGCTGTTTAGG----AACCACCTTGCTTTACAATGGCTTTTATAAGGGATTTCAAGGTCTATACGTCCAAATGTAGAC
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2118796 1374 +   2144893 gggggtgggtatgctattggcgcgtggtgggtagaggccaggtctgctgctaacatcctacagcgcacagtccgggcccctacaacacagctctccagccccaagcgtaaataacgcagagactgagagaccctgatgggaagcatgaagcactgtggcttgttctgaaaactgtgttttgtgtggt-----tgaagtgtgcggcggattggtgaggaaggagaGTCCAGGGAAAACTGG-GGACCTGAGACCCAACAAATGGACTGGGTGCTGAAGCTGCTGCTCCTCGGCTCAGATCTCACCCCAAAGGAGACAGGAGCCACCACAGTGCTTTTGGAGAACCAACATCAGCAGCACTCACACATGGAAAGGTTGCCCTGACAGTAATGCCCAGATGGATGGCAGAGCAGGCAGGCAGCTGCAGTAATTCAGGGCAGAAATGGGGAGGGTTTTAAAGAAGAACAGTGAGACTTGGTGACCCTCTGACTGTGAGAAAGATGAAGTCACAGATGGCCGCTGGGTTCCTAGCGTGACGGCTGGGTGACTGTCCCCACGCACTGAGGCCAGCCACACAGCACAGAGGAGCAGGCTTCTGGCGGAAGGTGCTGAGCTTTGGAAGGTGAAAGACATCTTGAGTATGAGTAATATACCTAAGGTCGCCCATGTGTGGACGACAGAGCCAGGAGGAAAACTCAGGGCTCTGTTGTTCTCTCTCTTGCAGTAAGTGACCAGAAACTTCGTAACAAAAGATTCACTGGGAAAATCCAGAGGAAGTTAGAGCCCAGCATTCAAACGTAGCTTGCTTTCGGCTTCCTCATCCCCTTTTCGGAGTCTTGCCTGGGTGCTCCCAAAGTCTCGACAGCACTAGTGGGAATGCAGCCAAACAATAAGGCTA--TTTTTTCTATACCATGGTGTTTTATTCTTTGGCTACTCTAATCTGTATCATCAGTTCTCTGATTTTTTTCCATGCAAAGGAGAAA----TAGTTAATAAGTCAATGGACAATAAAGTTGGCATTAATCCTCTGCAAAACTGCAAATGTGAGCTCACATACTCATGAGGCTTGTGCGTGGACAGGCTGTGCTGCCTCTGCGGGGCCCTCCTGCTTCTGCTCAAGGGCCAAGGAACAGTGCACCCCAGGGAAGCCTTCACCTGGCCCGGGGCCCGGGGTTTCAAGTG------TGTG-----GATGTAGGAGTGGTAAGACCGTTGAGGTCTCACTCAACTCCACTTCTCCTTGCTCCCCACTCTGTGCCACCTTCCAGTCTTCCACACGCCTTTAAGAACAACAGAACAGGAGAAGGTCTCAGGTGAGCTGTTTAGG----AACCACCTTGCTTTACAATGGCTTTTATAAGGGATTTCAAGGTCTGTACGTCCAAACGTAGAC
i manLeu1.NW_012104154v1    I 306 C 0
s colAng1.NW_012115910v1      6773376 1388 -   6934359 gggggtgggtgtgctattggcacgtgatgggtagaagctaggtctgctgctaacatcttacagtgcacaggccaggcctctacaacatagctctccagccctgagcataaataatgcagagattgagagaccctgATTGGTGGCATGAAGCAGTGTGGCTTTTTCTGAAAACTGTGTTTTGTGTGGTTGGAGTGAAGTGTGCAGTGGATTGGTGAGGAAGGAAAGTCCAGGGAAAACTGGGGGACCTGAGACCCAACAAATGGACTGGGTGCTGAAGCTACTGCTCCATGACCCGGATCTCACCCCGAAGGAGACAGGAGTCACCACAGTGCTTTTGGAGAACCAACATCAGGAGCAGTCACATACGG--AGGTTACCCTGTCAGTAATGCCCAGATGGATGGCAGAGCAGGGAGGTAGCTGCAGTAATTCAGGGCAGAAATGGGGAGGGCTTTAAAGAAGAACAGTGAGACTTAGTGACCCTCTGACTGCAAGGAAGGTGAAGTCACAGATGGCCGCTGGGTTCCTAGTGTGATGACTGGGTGACTCTCCTCACTCACTGAGGCCAGAAACAGAGTGCAGAGGAGCAGGTTTCTGGAGCAAGGTGCTGAGC-TTGAAACGTGAAAGACACCTTGAGTATGAGTAATATATCTAAGGTCGCCCATGTGTGGACGACAGGGCCAGGAGGAAAATTCAGGGCTCTGTTGTTCTCTCTGTTGCAGTAAATGACCAGAAACTTCATAACAAAAGATTCATTGGGAAAACCCAGAGGAAGTTAGAGCCAAGCATTCAAATGCAGCTTGCTTTCAGCTTCCTCACCCCCTTTCCAGAGACTCGCTTGGGTGCTCCCAGAGTCTCAACAGCACTAGTGGGAATGCAGCCAAACAATAAGACTA-TTTTTTTCTATACCTTGGTGTTTTATTCTTTGGCTACTGTAATCTATGTTGTCAATTCTCTGATTTTTTTCAATGCAAAGGAGAAATTAGTTGTTAATAAGTCAGTGGACAATAAAGTTGACATTAATCCTCTGCAAAACTACAAATGTGAGCCCACATACTCACGAGGGTTGTGCATAGACCTGCTGTGCTGCCTCTGTGGGGCCCTCCTGCTTTGGCTCAAGGGCCAAGGAAGAGTGCACTCAAGGGAAGCCTTCGCCGGGCCCAGGACCCAGGGTTTCAGACGCGTGGATGTG-----GATGTAGGAGCAGTAAGATTGTTCAGGTCTCACTCAACTCCACTTCTCCTTCCTCCCCACTCTGTGTCACCTTCCTGTCCTCCTCACTCCTTCAAGAACAACAGAAAATGAGAAGGTTTCAGGTGATTTGTTTAGG----AACCACCTTGCTTTACAATGGCTTCGGTAGGGGGTTTCAAGGTCTGTATGTCCAAATGTGGAC
i colAng1.NW_012115910v1    C 0 I 14
e nomLeu3.chr6               75903756    0 + 121039945 C

a score=-4055.000000
s hg38.chr15_KI270851v1_alt     27919 1 +    263054 -C
s gorGor5.CYUI01000350v1        31210 1 -    142253 -C
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108346495 1 + 111343173 A-
i rheMac8.chr15             C 0 I 8
s macFas5.chr15             106257770 1 + 112612857 A-
i macFas5.chr15             C 0 I 8
s macNem1.NW_012012133v1     22638078 1 +  28977278 A-
i macNem1.NW_012012133v1    C 0 I 8
s cerAty1.NW_012000030v1      1907231 1 +   8072957 A-
i cerAty1.NW_012000030v1    C 0 I 15
s chlSab2.chr12             102625209 1 + 108555830 A-
i chlSab2.chr12             C 0 I 8
s manLeu1.NW_012104154v1      2120170 1 +   2144893 A-
i manLeu1.NW_012104154v1    C 0 I 8
e nomLeu3.chr6               75903756 0 + 121039945 C
e colAng1.NW_012115910v1      6774764 14 -   6934359 I

a score=2784.000000
s hg38.chr15_KI270851v1_alt     27920 7 +    263054 AATGGTC-
s gorGor5.CYUI01000350v1        31211 6 -    142253 AATGGT--
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108346504 7 + 111343173 GATGGG-A
i rheMac8.chr15             I 8 C 0
s macFas5.chr15             106257779 7 + 112612857 GATGGG-A
i macFas5.chr15             I 8 C 0
s macNem1.NW_012012133v1     22638087 7 +  28977278 GATGGG-A
i macNem1.NW_012012133v1    I 8 C 0
s chlSab2.chr12             102625218 7 + 108555830 GATGGG-A
i chlSab2.chr12             I 8 C 0
s manLeu1.NW_012104154v1      2120179 7 +   2144893 GATGGG-A
i manLeu1.NW_012104154v1    I 8 C 0
e nomLeu3.chr6               75903756 0 + 121039945 C
e colAng1.NW_012115910v1      6774764 14 -   6934359 I
e cerAty1.NW_012000030v1      1907232 15 +   8072957 I

a score=-791.000000
s hg38.chr15_KI270851v1_alt     27927 2 +    263054 CA-
s gorGor5.CYUI01000350v1        31217 2 -    142253 CA-
i gorGor5.CYUI01000350v1    C 0 C 0
s colAng1.NW_012115910v1      6774778 2 -   6934359 -GG
i colAng1.NW_012115910v1    I 14 C 0
e nomLeu3.chr6               75903756 0 + 121039945 C
e manLeu1.NW_012104154v1      2120186 0 +   2144893 C
e cerAty1.NW_012000030v1      1907232 15 +   8072957 I
e macNem1.NW_012012133v1     22638094 0 +  28977278 C
e rheMac8.chr15             108346511 0 + 111343173 C
e chlSab2.chr12             102625225 0 + 108555830 C
e macFas5.chr15             106257786 0 + 112612857 C

a score=2600548.000000
s hg38.chr15_KI270851v1_alt     27929 840 +    263054 ATTAACCAGAGAAAACATAGAACTGATCAATTGCAAGGCAAAGTTGGCATGTAGACATACACAGTTACTCTTGGTACAAAGCTATTTCTGAGCATAATGATAGCCAAGGCCATGAGGGATACTATGTGTTTAAATATGTGCATTGATAAGAAGCATAAAGCTAACTGATTCCTCGTGAGAGAAAAAGAAAAGTGAAATCTGAAAAATGTCTTTGTGTAAGTCATGTAGCAACCACCTTGCAGTGACAACCCTGAGCTCACACAGGCTGCTGTCCCTGCTGGCTCTTCAATGGAAGAGGAAGGCAGTGTGGCAAGCCAGAGCTCAGTACTGGCTTCCAGAAGTGGAGGTCGATGTCTTTATGATGTTCTTGCCTCTGGCGGGGATAAAGTCTGGAATACCTGGAGGGAGAATGGATGTCCATTAAGATAGTAATACTTGTGATCTGCAAGTCTCTTGACAGCTTACGATCCTGCTCTCTGCAAAATGTTTCCACGCTTATCATTCATGTTCCAAATCCCTGTTTGGTGGTGCATTTTCTCTCGTGGAAATTCCATTATCACAAATGGAAACCATTTGCCTATGGCTTCCACCCACCAGTGACTTGACTACAGACAAATACGttacccatgtttttatttatttctgtgttcttggtgctctggcatctggggcctctctggctggggaaagactgctcctcccagggccagctaattcttagaggtgataaacacgcctttcacaagcaaattaactgctcctataggctcccccctccactaccttctttatgtggctcttatcctgcaggaatattgattccctcacctggtcacccca
s gorGor5.CYUI01000350v1        31219 837 -    142253 ATTAACCAGAGAAAACATAGAACTGATCAATTGCAAGGCAAAGTTGGCACGTAGACATACACAGTTACTCTTGGTACAAAGCTATTTCTGAGCATAATGATAGCCAAGGCCATGAGGGATACTATGTGTTTAAATATGTGCATTGATAAGAAGCATAAACCTAACTGATTCCTCGTGAGCAAAAAAGAAAAGTGAAATCTGAAAAATGTCTTTGTGTAAGTCATGTAGCAACCACCTTGCAGTGACAACCCTGAGCTCACACAGGCTGCTGTCCCTGCTGGCTCTTCAATGGAAGAGGAAGGCAGTGTGGCAAGCCAGAGCTCAGTACTGGCTTCCAGAAGTGGAGGTCAATGTCTTTATGATGTTCTTGCCTCTGGCGGGGATAAGGTCTGGAATACCTGGAGGGAGAATGGATGTCCATTAAGATAGTAATACTTGTGATCTGCAAGTCTCTTGACAGCTTACGATCCTGCTCTCTGCAAAATGTTTCCATGCTTATCATTCATGTTCCAAATCCCTGTGTGGTGGTGCATTTTCTCTCGTGGAAATTCCATTATCACAAATGGAAACCATTTGCCTACGGCTTCCACCCACCAGTGACTTGACTACAGACAAATACGTCACccatgtttttatttatttctgtgttcttggtgctctggcatctgggg-ctctatggctggggaaagactgctcctcccagggccagctaattcttagaggtgataaacatgcctttcacaagcaaattaactgctcctataggctcccccctcaactaccttctttatgtggctcttatccttcaggccaac--attccctcacctggtcacccca
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108346511 838 + 111343173 ATTAACCAGAGAAAACATACAACTGATCAATCGCAAGGCAAAGTTGCCACGTAGACATACACAGGTCCTCTTGGTACCAAGCTATTTGTGAGCATGATGATAGCCAAGGCCGTGAGGGATACTATGTGTTTAAAGATGTGCCTTGATGAGAAGCATAAACCTGACTGATTCCTCGTGGGAGAAAAAGAAAAGTGAAATCTGAAAAACGTCTTTGTGTAAGTCATGTAGCGACCGCCTTGCAGTGACGACCCTGAGCTCACACAGGCTGCTGTCCCTGCCGGCTCTTCAATGGAAGGGGAAGGCAGTGTGGCAGGCCAGAGCTCAGTACTGGCTTCCAGAGGTGGAGGTCGATGTCTTTATGATGTTCTTGCCTCTGGCGGGGATAAAGTCTAGACCACCTGCAGGGAGAATAGATGTCCATTAAGGTAGCAATACTTGTGATCTGCAAGTCTCTCGACAGCTTACGATCGTGTTCTCTGCAAAATGTTTCCACGCTTATCGTTCATGTTCCAAATCCCTGTGTGGTGGTGCATTTTCTCTCGTGGAAATTCCATTCTCACAAATGGAAACCATTTGCCTATGGCTTCCACCCACCAGTGGCTTGACTACagacaagtgtattacccatgtttttatttatttctgtgttcttggtgctgtcgtatctggggcctctctggctggggacagactgctcctcccagggccagccaattcttagaggtgataaacatgcctttcacaagcaaattaactgctcctataggctcctccttcaactaccttctttatgtggatgttatcctgcaggccaat--attccctcacctggtcacccca
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106257786 838 + 112612857 ATTAACCAGAGAAAACATAGAACTGATCAATCGCAAGGCAAAGTTGCCACGTAGACATACACAGGTCCTCTTGGTACCAAGCTATTTGTGAGCATGATGATAGCCAAGGCCGTGAGGGATACTATGTGTTTAAAGATGTGCCTTGATGAGAAGCATAAACCTGACTGATTCCTCGTGGGAGAAAAAGAAAAGTGAAATCTGAAAAACGTCTTTGTGTAAGTCATGTAGCGACCGCCTTGCAGTGACGACCCTGAGCTCACACAGGCTGCTGTCCCTGCCGGCTCTTCAATGGAAGGGGAAGGCAGTGTGGCAGGCCAGAGCTCAGTACTGGCTTCCAGAGGTGGAGGTCGATGTCTTTATGATGTTCTTGCCTCTGGCGGGGATAAAGTCTAGACCACCTGCAGGGAGAATAGATGTCCATTAAGGTAGCAATACTTGTTATCTGCAAGTCTCTCGACAGCTTACGATCGTGTTCTCTGCAAAATGTTTCCACGCTTATCGTTCATGTTCCAAATCCCTGTGTGGTGGTGCATTTTCTCTCGTGGAAATTCCATTCTCACAAATGGAAACCATTTGCCTATGGCTTCCACCCACCAGTGGCTTGACTACagacaagtgtattacccatgtttttatttatttctgtgttcttggtgctgtcgtatctggggcctctctggctggggacagactgctcctcccagggccagccaattcttagaggtgataaacatgcctttcacaagcaaattaactgctcctataggctcctccttcaactaccttctttatgtggatgttatcctgcaggccaat--attccctcacctggtcacccca
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22638094 838 +  28977278 ATTAACCAGAGAAAACATAGAACTGATCAATCGCAAGGCAAAGTTGCCACGTAGACATACACAGGTCCTCTTGGTACCAAGCTATTTGTGAGCATGGTGATAGCCAAGGCCGTGAGGGATACTATGTGTTTAAAGATGTGCCTTGATGAGAAGCATAAACCTGACTGATTCCTCGTGGGAGAAAAAGAAAAGTGAAATCTGAAAAACATCTTTGTGTAAGTCATGTAGCGACCGCCTTGCAGTGACGACCCTGAGCTCACACAGGCTGCTGTCCCTGCCGGCTCTTCAATGGAAGGGGAAGGCAGTGTGGCAGGCCAGAGCTCAGTACTGGCTTCCAGAGGTGGAGGTCGATGTCTTTATGATGTTCTTGCCTCTGGCGGGGATAAAGTCTAGACCACCTGCAGGGAGAATAGATGTCCATTAAGGTAGCAATACTTGTGATCTGCAAGTCTCTCGACAGCTTACGATCGTGTTCTCTGCAAAATGTTTCCACGCTTATCGTTCATGTTCCAAATCCCTGTGTGGTGGTGCATTTTCTCTCGTGGAAATTCCATTCTCACAAATGGAAACCATTTGCCTATGGCTTCCACCCACCAGTGGCTTGACTACagacaagtgtattacccatgtttttatttatttctgtgttcttggtgctgtcgtatctggggcctctctggctggggacagactgctcctcccagggccagccaattcttagaggtgataaacatgcctttcacaagcaaattaactgctcctataggctcctccttcaactaccttctttatgtggatgttatcctgcaggccaat--attccctcacctggtcacccca
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1907247 838 +   8072957 ATTAACTGGAGAAAACACATAACTGATCAATTGCAAGGCAAAGTTGGCATGTAGACGTACACAGGTCCTCTTGGTACCAAGCTGTTTGTGAGCATAATGATAGCCAAGGCCATGAGGGATGCTATGTATTTAAAGATGTGCCTTGATAAGAAGCAAAAACCTAACTGATTCCTCGTGAGAGAAAAAGAAAAGTGAAACCTGAAAAATGTCTTTGTGTAAGTCATGTAGCGACCGCCTTGCAGTGACGACCCTGAGCTCACACAGGCTGCTGTCCCTGCTGGCTCTTCAATGGAAGGGGAAGGCAGTGTGGCAGGCCAGCGCTCAGTACTGGCTTCCAGAGGTGGAGGTCGATGTCTTTATGATGTTCTTGCCTCTGGCGGGGATCAAGTCTAGGCCACCTGCCGGGAGAGTAGATGTCCGTTAAGGTAGCAATACTTGTGATCTGCAAGTCTCTTGATAGCTTACAATCGTGTTCTCTGCAAAATGTTTCCACGCTTATCGTTCATGTTCCGAATCCCTGTGTGGTGGTGCATTTTCTCTCGTGGAAATTCCATTCTCACAAAAGGAAACCATTTGCCTATGGCTTCCACCCACCAGTGACttcactacagacaagtgcattacccatgtttttatttatttctgtgttcttggtgctgtcgtatctggggcctctctggctggggacagactgctcctcccagggccagccaattcttagaggtgataaacatgcctttcacaagcaaatttactgctcctataggctcctccttcaactaccttctttatgtggatgttatcctgcaggccaat--attccttcacctggttacccca
i cerAty1.NW_012000030v1    I 15 C 0
s chlSab2.chr12             102625225 838 + 108555830 ATTAACCAGAGAAAACATAGAACTGATCAGTTGCAAGGCAAAGTTGCCACGTAGACATACACAGGTCCTCTTGGCACCAAGCTATTTGTGAGCTTAATGATAGCCAAGGCCGTGAGGGATACTATATGTTTAAAGATGTGCCTTGATGAGAAGCATCAACCTGACTGATTCCTCGTGAGAGAAAAAGAAAAGTGAAATCTGAAAAACGTCTTTGTGTAAGTCATGTAGCGACCGCCTTGCAGTGACGTCCCTGAGGTCACACAGGCTGCTGTCCCTGCTGGCTCTTCAATGGAAGGGGGAGGCAGTGTGGCAGGCCAGAGCTCAGTACTGGCTTCCAAAGGTGGAGGTCGATGTCTTCATGATGTTCTTGCCTCTGGCGGGGATAAAGTCTAGACCACCTGCAGGGAGAATAGATGTCCATTAAGGTAGCAATACTTGTGATCTGCAAGTGTTTTGACAGCTTACGATCGTGTTCTCTGCAAAATGTTTCCACGCTTATCGTTCATGTTCCAAATCCCTGTGTGGTGGTGTAGTTTCTCTCGTGGAAATTCCATTCTCACAAATGGAAACCATTTGCCTATGGCTTCCACCCACCAGTGACTTGACTACagacaagtgtattacccatgtttttatttatttctatgttcttggtgctgtcgtatctggggcctctctggctggggacagactgctcctcccagggccagccaattcttagaggtgataaacatgcctttcacaagcaaattaactgctcctataggctcctccttcaactaccttctttatgtggctgttatcctgcaggccaat--attccctcacctggtcacccca
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2120186 838 +   2144893 ATTAACCAGAGAAAACATAGAACTGATCAATCACAAGGCAAAGTTGCCACGTAGACATACACAGGTCCTCTTGGTACCAAGCTATTTGTGAGCATAATGATAGCCAAGGCCATGAGGGATGCTATGTATTTAAAGATGTGCCTTGATGAGAAGCATAAACCTGACTGATTCCTCGTGGGAGAAAAAGAAAAGTGAAATCTGAAAAATGTCTTTGTGTAAGTCATGTAGCGACCGCCTTGCAGTGACGACCCTGAGCTCACACAGGCTGCTGTCCCTGCTGGCTCTTCAATGGAAGGGGAAGGCAGTGTGGCAGGCCAGAGCTCAGTACTGGCTTCCAGAGGTGGAGGTCGATGTCTTTATGATGTTCTTGCCTCTGGCGGGGATAAAGTCTAGGCCACCTGCAGGGAGAATAGATGTCCGTTAAGGTAGCAATACTTGTGATCTGCAAGTCTCTCGACAGCTTACGATCGTGTTCTCTGCAAAATGTTTCCACGCTTATCGTTCATGTTCCAAATCCCTGTGTGGTGGTGCATTTTCTCTCGTGGAAATTCCATTCTCACAAAAGGAAACCATTTGCCTATGGCTTCCACCCACCAGTGACTTGACTACagacaagtgtattacccatgtttttatttatttctgtgttcttggtgctgtcgtatctggggcctctctggctggggacagactgctcctcccagggccagccaattcttagaggtgataaacatgcctttcacaagcaaattaactgctcctataggctcctccttcaactaccttctttatgtggatgttatcctgcaggccaat--attccctcacctggtcacccca
i manLeu1.NW_012104154v1    C 0 C 0
s colAng1.NW_012115910v1      6774780 830 -   6934359 ATTAACCGGATAAAACACATAACTGATCAATTGCAAGGCAAAGTTGGCATGTAGACATACACAGGTCCTCTTGGTACAAAGCTATTTCTGAGCATAATGATAGCCAAGGCTGTGAGGGATACTATGTATTTAAAGATGTGCATTGATAAGAAGCAAAACCCTAACTGATTCCTCGTGAGAGACAAAGAAAAGTGAAATCTGAAAAATGTCTTTGTGTAAGTCATGTAGGGGCCACCTTGCAGTGACAACCCTGAGCTCACACAGGCTGCTGTCCCTGCTGGCTCTTCAATGGAAGGGGAAG-------GGCAAGCCAGAGCTCAGTACTGGCTTCCAGAGGTGGAGGTCGATGTCTTCATGATGTTCTTGCCTCTGGTGGGGATAAAGTCTAGACCACCTGGAGGGAGAATGGATGTCCATTAA-GTAGCAATACTTGTGATCTGCAAGTCTCTCGATAGCTTACAGTCGTGTTCTCTGCAAAATGTTTCCACGCTTATCATTTATGTTCCAAATCCCTGTGTGGTGGTGCATTTTCCCTTATGGAAATTCCATTATCACAAATGGAAACCATTTGCCTATGGCTTCCACTCACCAGTGACttcactacagacaagtgcattacccatgtttttatttatttctgtgttattggtgctctgggttctgggacctctctggctgggtacagactgctcctcccagggccagccaattcttagaggtgataaacatgcctttcacaagcaaattaacagctcctataggctccctgctcaactaccttcttcatgtggctcttatcctgcaggccaat--attgcctcacctggtcacccca
i colAng1.NW_012115910v1    C 0 C 0
e nomLeu3.chr6               75903756   0 + 121039945 C

a score=371291.000000
s hg38.chr15_KI270851v1_alt     28769 161 +    263054 gggccaggcaccggacggcttggg---gtggctcccacatcacaCCCATTCCCCTGCTCCCTG-GGGACAATGTCACCCTAAC--CCACCCTCCCGCCCTCTCAGCTCCTGCCACATCCAGTTGGGCATTGGGTCTTTCTAGTTTTGCTGTTTTTAGGTCAAAACTA
s gorGor5.CYUI01000350v1        32056 161 -    142253 gggctaggcgccagatggcttggg---gtggctcccacatcacaCCCATCCCCCTGCTCCCTG-GGGACAATGTCACCCTAAC--CCACCCTCCCGCCCTCTCAGCTCCTGCCACATCCAGTTGGGCATTGGGTCTTTCTAGTTTTGCTGTTTTTAGGTCAAAACTA
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108347349 167 + 111343173 gggccaggcaccggactgcttggggtggtggctcccatatcacaTCCATCCCCCTGCTCCCTGTAGGACGATGTCACCCTAACCGCCCCCCCCCCGCCCTCTCAGCTCCTGCCACGTCCAGTTGGGCATCAGGTCTTTCTAGTTTTGCTCTTTTTAGGTCAAAACTA
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106258624 165 + 112612857 gggccaggcaccggactgcttggggtggtggctcccatatcacaTCCATCCCCCTGCTCCCTGTAGGACGATGTCACCCTAAC--CCCCCCTCCCGCCCTCTCAGCTCCTGCCACGTCCAGTTGGGCATCAGGTCTTTCTAGTTTTGCTCTTTTTAGGTCAAAACTA
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22638932 159 +  28977278 gggccaggcaccggacTGCTT------GTGGCTCCCATATCACATCCATCCCCCTGCTCCCTGTAGGATGATGTCACCCTAAC--CCCCCCTCCCGCCCTCTCAGCTCCTGCCACATCCAGTTGGGCATCAGGTCTTTCTAGTTTTGCTCTTTTTAGGTCAAAACTA
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1908085 165 +   8072957 gggccaggcaccggactgcttggggtggtggctcccatatcacaTCCATCCCACTGCTCCCTGTAGGACGATGTCACCCTAAC--CCCCCCTCCCGCCCTCTCAGCTCCTGCCACGTCCAGTTGGGCATCAGGTCTTTCTAGTTTTGCTCTTTTTAGGTCAAAACTA
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102626063 159 + 108555830 gggccaggggccggacTGCTTGGGGTGGTGGCTCCCGTATCACATCCATCCCCCTGCTCCCTG-----TGATGTCACCCTAA---ACCCCCTCCCGCCCTCTGAGCTCCTGCCACATCCAGTTGGGCATCAGGTCGTTCTAGTTTTGCTCTTTTTAGATCAAAACTA
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2121024 167 +   2144893 gggccaggcaccggactgcttggggtggtggctcccatatcacaTCCATCCCCCTGCTCCCTGGAGGACGATGTCACCCTAACCCCCCCCCTCCCGCCCTCTCAGCTCCTGCCACGTCCAGTTGGGCATCAGGTCTTTCTAGTTTTGCTCTTTTTAGGTCAAAACTA
i manLeu1.NW_012104154v1    C 0 C 0
e nomLeu3.chr6               75903756   0 + 121039945 C
e colAng1.NW_012115910v1      6775610   0 -   6934359 C

a score=27127.000000
s hg38.chr15_KI270851v1_alt     28930 312 +    263054 TCAGttttttatatccttttttttttttttttctgagacggagtcttactctgtcacccaggc----tggagtgcagtggcatgatcttggctcactgcaacctctgccatccaaattcaagcaattctcccgcctcagcctcccgagtagctgggattacaggcacctgcactgagtccggctaattttttgtatttttagtagagacggggtttcatcatctcagccaggctggtctggaactgctgacctcgtgatccacccgccttggcctcccaaagtgctgggattataggcatgagccaccgcacccgg
s gorGor5.CYUI01000350v1        32217 314 -    142253 CCAGttttttatatcc--ttttttttttttttctgagatggagtcttactctgtcacccaggctggatggagtacagtggcatgatcttggctcactgcaacctctgccatccaagttcaagcaattctcccgcctcagcctcctgagtagctgggattgcaggcacctgcactgcgtccggctaattttttgtatttttagtagagacggggtttcatcatctcagccaggctggtctggaactcctgacctcgtgatccacccgccttggcctcccaaagtgctgggattataggcgtgagccacctcacccgg
i gorGor5.CYUI01000350v1    C 0 C 0
e nomLeu3.chr6               75903756   0 + 121039945 C
e colAng1.NW_012115910v1      6775610   0 -   6934359 C
e manLeu1.NW_012104154v1      2121191   0 +   2144893 C
e cerAty1.NW_012000030v1      1908250   0 +   8072957 C
e macNem1.NW_012012133v1     22639091   0 +  28977278 C
e rheMac8.chr15             108347516   0 + 111343173 C
e chlSab2.chr12             102626222   0 + 108555830 C
e macFas5.chr15             106258789   0 + 112612857 C

a score=1156835.000000
s hg38.chr15_KI270851v1_alt     29242 508 +    263054 ccAGTTTTTTATATTCTTAAATATATTTCAAAGTTTTGTTTTCTCTCCTGAACCAGGTCACCTGTCTCTTGCCCTGCTCAGCACATCTTTCGTCTGAACTCAGATAATGCCTCCTCCCTCTGGAAAGTCTGTCACCCCCTCCTTATACCGAAGTGAGTAGCTTCTCAGTACCAAATAGAGGACTTTGGGGACATGACTTCTTCCCATGTCTCCTTTTGAAACTCCTAGTGTTCTTCTATCCAACAAAGATTTCCTTATATCGACATagtcctcacttcgcatagtagtctgtgactataagaacgaccatgcaagccaaaactataaagtgatcttaataatcagtggagaaaatcatgagtgttctgcaacctttgaatttttttatccacacgttaacatgtctcttaccattgcatattgtcttcatatgaacacatgaaaacgaaactcaggaaaactgatatttatttcatatattgtaatttaaaatctttagacacactga
s gorGor5.CYUI01000350v1        32531 507 -    142253 ccAGTTTTTTATATTCTTAAATATATTTCAAAGTTTTGTTTTCTCTCCTGAACCAGGTCATCTGTCTCTTGCCCTGCTCAGCACATCTTTCATCTGAACTCAGATAATGCCTCCTTCCTCTGGAAAGTCTGTCACCCCCTCCTTATACCGAAGTGAGTAGCTTCTCAGTACCAAATAGAGGACTTTGGGGACATGACTTTTTCCCATGTCTCCTTTTGAAACTCCTAGTGTTCTTCTATCCAACAAAGATTTCCTTATATCGACATagtcctcactttgcatagtagtctgtgactataagaacga-catgcaagccaaaactatcaagtgatcttaataatcagtggagaaaatcatgagtgttctgaaacctttgaatttttttgtccacacgttaacatgtctcttaccactgcatattgtcttcatatgaacacatgaaaacgaaactcaggaaaactcatatttatttcatatattgtaatttaaaatctttagacacactga
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108347516 497 + 111343173 CCAGTTTTTAACATTCTTAAATATGTTTCAAAGTTTTGTTTTCTCTCCCGAACCAGTTCAGCTGCCTCTTGCCCTGCTCAGCACATCTTTCACCTGAATG----------CTCCTCCTTCTGGAAAG-CTGTCGCCTCCTCCCTATACCTAAGTGAGTATCTTCTTAGCACCAAATAGAGGACTTTGGGGACATGACTTCTTCCCATGTCTCCTTTTGAAACTCCTAGCGTGCTTCTATCCAGCAAAGATTTCCTGATAGCAACAcagtcctcactttgcatagtagtctgtgagcagaagattgaccatgcaagtcaaaactataaagtgatcttaataatcagtggaaaaaattatgagtgttctgcaacctttgaatttttttgtcccagcattaacaagtctcttaccattgcatattgttttcatacgaacacatgaaaacaaaactcaggaaaacggatattcatttcgtatgttgtaatttaaaagcattagacacattga
i rheMac8.chr15             C 0 I 341
s macFas5.chr15             106258789 497 + 112612857 CCAGTTTTTAACATTCTTAAATATGTTTCAAAGTTTTGTTTTCTCTCCCGAACCAGTTCAGCTGCCTCTTGCCCTGCTCAGCACATCTTTCACCTGAATG----------CTCCTCCTTCTGGAAAG-CTGTCGCCTCCTCCCTATACCTAAGTGAGTATCTTCTTAGCACCAAATAGAGGACTTTGGGGACATGACTTCTTCCCATGTCTCCTGTGGAAACTCCTAGCGTGCTTCTATCCAGCAAAGATTTCCTGATAGCAACAcagtcctcactttgcatagtagtctgtgagcagaagattgaccatgcaagtcaaaactataaagtgatcttaataatcagtggaaaaaattatgagtgttctgcaacctttgaatttttttgtcccagcattaacaagtctcttaccattgcatattgttttcatacgaacacatgaaaacaaaactcaggaaaacggatattcatttcgtatgttgtaatttaaaagcattagacacattga
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22639091 497 +  28977278 CCAGTTTTTAACATTCTTAAATATGTTTCAAAGTTTTGTTTTCTCTCCCGAACCAGTTCAGCTGCCTCTTGCCCTGCTCAGCACATCTTTCACCTGAATG----------CTCCTCCTTCTGGAAAG-CTGTCGCCTCCTCCCTATACCTAAGTGAGTATCTTCTTAGCACCAAATAGAGGACTTTGGGGACATGACTTCTTCCCATGTCTCCTTTTGAAACTCCTAGCGTGCTTCTATCCAGCAAAGATTTCCTGATAGCAACAcagtcctcactttgcatagtagtctgtgaccagaagattgaccatgcaagtcaaaactataaagtgatcttaataatcagtggaaaaaattatgagtgttctgcaacctttgaatttttttgtcccagcattaacaagtctcttaccattgcatattgttttcatacaaacacatgaaaacaaaactcaggaaaacggatattcatttcgtatgttgtaatttaaaagcattagacacattga
i macNem1.NW_012012133v1    C 0 I 341
s cerAty1.NW_012000030v1      1908250 497 +   8072957 CCAGTTTTTAACATTCTTAAATATATTTCAAAGTTTTGTTTTCTCCCCCGAACCAGTTCAGCTGCCTCTTGCCCTGCTCAGCACATCTTTCACCTGAACG----------CTCCTCCTTCTGGAAAG-CTGTCGCCTCCTCCCTATACCTAAGTGAGTATCTTCTTAGCACCAAATAGAGGACTTTGGGGACATGACTTCTTCCCATGTCTCCTTTTGAAACTCCTAGCGTGCTTCTATCCAGCAAAGATTTCCTGATAGCAACAcagtcctcactttgcatagtagtctgtgaccagaagattgaccgtgcaagtcaaaactataaagtgatcttaataatcaggggaaaaaatcatgagtgttctgcaacctttgaatttttttgtcccagcattaacaagtctcttaccattgcatattgttttcatacgaacacatgaaaacaaaactcaggaaaacggatattcatttcgtatgttgtaatttaaaagcattagacacattga
i cerAty1.NW_012000030v1    C 0 I 340
s chlSab2.chr12             102626222 496 + 108555830 CCAGTTTTTAACATTTTTAAATATATGTCAAAGTTTCGTTTTCTCTCCCGAACCAGTTCAGCTGTCTCTTGCCCTGCTCAGCACATCTTTCACCTGAATG----------TTCCTCCTTCTGGAAAG-CTGTCACCTCCTCCTTATACCTAAGTGAGTATCTTCTTAGTACCAAACAGAGGACTCTGGGGACATGACTTCTTCCCATGTCTCCTTTCGAAACTCCTAGCTTGCTTCTATCCAGCAAAGATTTCCTGATATCAACAcagtcctcactttg-atagtagtctgtgaccagaagattgaccatggaagtcaaaactataaagtgatcttaataatcagtggagaaaaccatgagtgttctgcaacctttgaatttttttgtcccagcattaacaagtctcttaccattgcctattgttctcatatgaacacatgaaaacaaaactcaggaaaacagatattcatttcctatgttgtaatttaaaagcattagacacattga
i chlSab2.chr12             C 0 I 341
s manLeu1.NW_012104154v1      2121191 496 +   2144893 CCAGTTTTTAACATTCTTAAATATATTTCAAAGTTTTGTTTTCTCCCCCGAACCAGTTCAGCTGCCTCTTGCCCTGCTCAGCACATCTTTCACCTGAACG----------CTCCTCCTTCTGGAAAG-CTGTCGCCTCCTCCCTATACCTAAGTGAGTATCTTCTTAGCACCAAATAGAGGATTTTGGGGACATGACTTCTTCCCATGTCTCCTTTTGAAACTCCTAGCGTGCTTCTATCCAGCAAAGATTTCCTGATAGCAACAcagtcctcactttgcatagta-tcggtgactataagaatgaccatgcaagccaaaactataaagtgatcttaataatcagtggaaaaaatcatgagtgttctgcaacctttgaatttttttgtcccagcattaacaagtctcttaccattgcatattgttttcatacgaatacatgaaaacaagactcaggaaaacggatattcatttcgtatgttgtaatttaaaagcattagacacattga
i manLeu1.NW_012104154v1    C 0 I 343
e nomLeu3.chr6               75903756   0 + 121039945 C
e colAng1.NW_012115910v1      6775610   0 -   6934359 C

a score=3799.000000
s hg38.chr15_KI270851v1_alt     29750 22 +    263054 tagttcaag---cttatttctttat
s gorGor5.CYUI01000350v1        33038 22 -    142253 gaattcaag---cttatttctttat
i gorGor5.CYUI01000350v1    C 0 C 0
s macFas5.chr15             106259286 25 + 112612857 gaattaaagtgttttatttctttat
i macFas5.chr15             C 0 I 277
e nomLeu3.chr6               75903756  0 + 121039945 C
e colAng1.NW_012115910v1      6775610  0 -   6934359 C
e manLeu1.NW_012104154v1      2121687 343 +   2144893 I
e cerAty1.NW_012000030v1      1908747 340 +   8072957 I
e macNem1.NW_012012133v1     22639588 341 +  28977278 I
e rheMac8.chr15             108348013 341 + 111343173 I
e chlSab2.chr12             102626718 341 + 108555830 I

a score=8090.000000
s hg38.chr15_KI270851v1_alt     29772 48 +    263054 aaaaatgtattaaaagCCAGGCTTGGTGGCCCCTAGCCTGGCTTGGTG
s gorGor5.CYUI01000350v1        33060 48 -    142253 aaaaatgtattaaaagCCAGGCTTGGTGGCCCCTAGCCTGGCTTGGTG
i gorGor5.CYUI01000350v1    C 0 C 0
s macFas5.chr15             106259588 39 + 112612857 aaaaaaGTATCGAAAGCCAGGCTTGGTGGCCCC-AGCCAC--------
i macFas5.chr15             I 277 C 0
e nomLeu3.chr6               75903756  0 + 121039945 C
e colAng1.NW_012115910v1      6775610  0 -   6934359 C
e manLeu1.NW_012104154v1      2121687 343 +   2144893 I
e cerAty1.NW_012000030v1      1908747 340 +   8072957 I
e macNem1.NW_012012133v1     22639588 341 +  28977278 I
e rheMac8.chr15             108348013 341 + 111343173 I
e chlSab2.chr12             102626718 341 + 108555830 I

a score=780.000000
s hg38.chr15_KI270851v1_alt     29820 2 +    263054 CA
s gorGor5.CYUI01000350v1        33108 2 -    142253 CA
i gorGor5.CYUI01000350v1    C 0 C 0
s macFas5.chr15             106259627 2 + 112612857 CG
i macFas5.chr15             C 0 C 0
s cerAty1.NW_012000030v1      1909087 2 +   8072957 CA
i cerAty1.NW_012000030v1    I 340 C 0
e nomLeu3.chr6               75903756 0 + 121039945 C
e colAng1.NW_012115910v1      6775610 0 -   6934359 C
e manLeu1.NW_012104154v1      2121687 343 +   2144893 I
e macNem1.NW_012012133v1     22639588 341 +  28977278 I
e rheMac8.chr15             108348013 341 + 111343173 I
e chlSab2.chr12             102626718 341 + 108555830 I

a score=3569320.000000
s hg38.chr15_KI270851v1_alt     29822 1489 +    263054 CCTCCTGACCAGTGCAATGTCAGCACCCACAGAGGCAGCACCACAGTGCCCTTTCCTGGAGGTCTGAATGGTacttccgaggctgtcactcttcctttctttcctgcactttcctctttgttggccaatccactcttccagtt-tttatctttgtaacattccgagtggttttattactaggaatctaagaagcaagatgactacacgtggtgttgtctgtacaggaaccgagctgtgcatgcggagggaagggccctgcagattctgaagggagtggtgtggttggtcactgatcgccacgtgctcctggtgttcatgtagaggctggtgggcagaggtgctaggagcgacgtgtgcactttgaaggcacagtgataactggagtttgaactgtTATGTAAATAAACTGTGAGCATTCAGTGCAGTGAAATCTCTCTAAGAATCCCCTTCAtgtccaaccaacagcccccgggctgcatgcagcccaggacagctttgaatgaggcccaacaaacatttgtaagctttcttaaaacattatgagg----------------tatttttt--gtca-tttttttt-ctttagctcatcagcttttgttagtgttaatgtattttatgtgcagtccaagacag---ttcttcttccagtgtggcccaggaaagccaaaagattggacactcctgATAAAGTGTTTTGCTGGCATCACTGGGCGCTGTGAGAATC-GGAGCCTGCAGAGTGAGGACTGCCCAGGGGTGTGGCATCTGCACAGTTACAGCTGAAAATGCCGTTTCCCACAGTGGGGTTTACTGTCCACTGGGGAAAGTGATGAGAAAAGTTCACCATGTAACTTTATTCTCAGGTGCGACTAAATCCCGGACACATCCTGCTGTTCTGACACAGCTTCACCTCATGCTCTCACTGGGGCTGCATGGACCTTGAACCCTGCCCCGTCAGCTTCTCCATTCCTCCTGGTTTGTCATGAGTCAAGTCTGATGGCCTCATCCACAAAACCGATCCTCTTCTCTTTCCACTTGTCCTTCCTCATCTCAGTCCTCGGAGCCCGTGCTGCCCCTGCCTCTGCACTTCGCAGATTAGTGAAAACTGCCATTTCTGGATCTTTCCAGTTAGACATAAAGTTCCACAAGGTCCAGAACTGCCGTAGAATCCTCATTTATAGACTCTGACTTTGCCATCTTTCC------------CTTAATACTATAGATGGCACCAGCATTGACCCAGCTACTCATTCAGGGAAGCCACTCAAGAAATGGATGACAAATTCCGTTGCGGCTTCTGCCATGGGACTAGTCCCCGATTCCTTTCCCCATTGCTGTTGCTTTAGTGAAGGCGGTCATCTCTTTTTCAGGTCTCTGGTTCTGGCTTCCCCTTCAGCCACCGTCCACTCTTCTGAAGCATTGCTTCTTTGACATAAGTCTGATACAGCACATTCAGGCCTTACATGGATCACTTTACAGACTCCCCAGTAGCCAcagca-ggatcttcaaggag
s gorGor5.CYUI01000350v1        33110 1489 -    142253 CCTCCTGACCAGTGCAATGTCAGCACCCACAGAGGCAGCACCACAGTGCCCTTTCCTGGAGGTCTgaatggtacttccgaggctgtcattcttcctttctttcctgcactttcctctttgttggccaatccactcttccagtt-tttatctttgtaacattccgagtggctttattactaggaatctaagaagccagatgactacacgtggtgttgtctgtacaggaaccgagttgtgcatgcggagggacgggccctgcagattctgaagggagtggtgtggttggtcactgatcgccacatgctcctggtgttcatgtagaggctggtgggcagaggtgctagcagcgacgtgtgcactttGAAGGCACAGTGATAACTGGAGTTTGGACTGTTATTTAAATAAACTGTGAGCATTCAGTGCAGTGAAATCTCTCTAAGAATCCCCTTCAtgtccaaccaacagcccccgggctgcatgcagcccaggacagctttgaatgaggcccaacaaacatttgtaaactttcttaaaacatcatgagg----------------tatttttt--gtca-tttttttt-ctttagctcatcagcttttgttagtgttaatgtattttatgtgcagtccaagacag---ttcttcttccagtgtggcccaggaaagccaaaagattggacactcctgATAAAGTGTTTTGCTGGCATCACTGGGTGCTGTGAGAATC-GGAGCCTGCAGAGTGAGGACTGCCCAGGGGTGTGGCATCTGCACAGTTACAGCTGAAAATGCAGTTTCCCACAGTGGGGTTTACTGTCCACT-GGGAAAGTGATGAGAAAAGTTCACCATGTAACTTTATTCTCAGGTGCGACTAAATCCTGGACACATACTGCTGTTCTGACACAGCTTCACCTCATGCTCTCACTGGGGCTGCATGGACCTTGAAGCCTGCCCCGTCAGCTTCTCCATTCCTCCTGGTTTGTCATGAGTCAAGTCTGATGGCCTCATCCACAAAACCGATCCTCTTCTCTTCCCACTTGTCCTTCCTCATCTCAGTCCTCAGAGCCCGTGCTGCCCCTGCCTCTGCACTTCACAGATTAGTGAAAACTGCCATTTCTGGATCTTTCCAGTTAGACATAAAGTTCCACAAGGTCCAGAATTGCCCCAGAATCCTCATTTATAGACTCTGACTTTGCCATCTTTCC------------CTTAATACTATAGATGGCGCCAGCATTGACCCAGCTACTCATTCAGGGAAGCCACTCAAGAAATGGATGACAAATTCTGTTGCGGCTTCTGCCATGGGACTAGTCCCCAATTCCTTTCCCCATTGCTGTTGCTTTAGTGAAGGCGGTCATCTCTTTTTCAGGTCTCTGGTTCTGGCTTCCCCTTCAGCCACTGTCCACTCTTCTGAAGCATTGCTTCTTTGACATAAGTCTGATACAGCACATTCAGGCCTTACATGGATCACTTTACAGACTCCCCAGTAGCCACAGcagggatcttcaaggag
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108348354 1503 + 111343173 CCTCCTGACca--gcagtgtcagcacccccagaggcagcgccacagtgccctttccctgaggtctgaacggtacttccggggctgtcactcttcctttctttcctgcactttcatctttgttggccaatctgctcttccagttgtttatttttgtaactttccgagtgggtttattactgggaacctacgaagcaagacgactacacgtggtgtttcccctacagaagccaaactgtgcttggggagg-------------ggttctgaagggagtgatgtggttggtcaccgaccgccatgtgctcctggtgttcatgtagaggttggcgggcagaggcgccagcaccaatgtgtgcactttGAAGGCACGGTGATAACTGGAGTTTGAACTGTTACTAAACTAAACTGTGAGCATTCAGGGCAGTGAAATCTCTCCAAGAACCCCCTTCACgtccaaccaacagcccccgggctgcaagcggcccaggacagctttgaatgtggcccaacacaaatttgtaaactttcttaaaacattatgaggtttttttgtgggtttctttttttt--gcca-ttttttttcctttagctcatcagcttttgttagtgttaatgtattttatgtgcagtccaagacag---ttcttcttccagtgtggcccaggaaagccaaaagattgggcactcctgATAACGTGTTTTGCTGGCATCACTGGGTGCTGGGAGAATTGGGATCCTGCAGAGTGAGGACTGCCCAGGGGTGTGACATCTGCACAGTTACAGCTGAAAAG--AGTTTCCTACAGTGGGGTTTACTGTCCACTGGGGACAGTGATGAGAAGAGTTCACCATGTAACTTTATTCTCAGGTGCAACTAAGTCCTGGACATATCCTGCTGTTCTGACACAGCTTCACTTCATGCTCTCACTGGGGCTACATGGACCTTGAACCCTGCCCCGTCAGCTTCTCCATTCCTCCTGACCTGTCGGGAGTCATATCTGATGGCCTCATCCACAAAACCGATCCTTTTCTCTTTCCACTTGTCCTTCCTCATCTCAGTCCTCAGAGCCCGTGCTGCCCCTGCCTCTGCATTTCACCAATTAGTGAAAACTACCATTTCTGGATCTTTCCAGTTAGACATAAAGTTCTCCAAGATCCAGAACTACCCTAGAATCTTCATTTATAGACTCTGCCTTTGCCATGTTTCCCACTTTGCAAATCTTAATACTATAGATGGTGCGAGCATCGGCCCAGCTATTCATTCAGGGAAGCCACTCAAGAAATGGATGACAAATTCTGTTGCAGCTTCTGCTGTGGGACTAGTCCCCGATTCCTTTCCCCATTGCTGTTGCTTTAGTGAAGGCAGTCATCTCTTTTTCAGGTCTCCGGTTCTGGCTTCCCTTTCAGCCACTGTCCACTATTCTGAAGCATTGTTTCTTTGACCTAAGTCTGATACGGCACATTCAGGCCTTACACGGATCGCTGTACAGACTCCCCATTAG-CACAGcagggatcttcaaggag
i rheMac8.chr15             I 341 C 0
s macFas5.chr15             106259629 1506 + 112612857 CCTCCTGACca--gcagtgtcagcacccccagaggcagcgccacagtgccctttccctgaggtctgaacggtacttccggggctgtcactcttcctttctttcctgcactttcatctttgttggccaatctgctcttccagttgtttatttttgtaacttttcgagtgggtttattactgggaacctacgaagcaagacgactacacgtggtgtttcccctacagaagccaaactgtgcttggggagg-------------ggttctgaagggagtgatgtggttggtcaccgaccgccatgtgctcctggtgttcatgtagaggttggcgggcagaggcgccagcaccaatgtgtgcactttGAAGGCACGGTGATAACTGGAGTTTGAACTGTTACTAAACTAAACTGTGAGCATTCAGGGCAGTGAAATCTCTCCAAGAACCCCCTTCACgtccaaccaacagcccccgggctgcaagcggcccaggacagctttgaatgtggcccaacacaaatttgtaaactttcttaaaacattatgaggtttttttgtgggtttctttttttt--gcca-ttttttttcctttagctcatcagcttttgttagtgttaatgtattttatgtgcagtccaagacagttcttcttcttccaatgtggcccaggaaagccaaaagattgggcactcctgATAACGTGTTTTGCTGGCGTCACTGGGTGCTGGGAGAATTGGGATCCTGCAGAGTGAGGACTGCCCAGGGGTGTGATATCTGCACAGTTACAGCTGAAAAG--AGTTTCCTACAGTGGGGTTTACTGTCCACTGGGGACAGTGATGAGAAGAGTTCACCATGTAACTTTATTCTCAGGTGCAACTAAGTCCTGGACACATCCTGCTGTTCTGACACAGCTTCACTTCATGCTCTCACTGGGGCTACATGGACCTTGAACCCTGCCCCGTCAGCTTCTCCATTCCTCCTGACCTGTCGTGAGTCAAATCTGATGGCCTCATCCACAAAACCGATCCTTTTCTCTTTCCACTTGTCCTTCCTCATCTCAGTCCTCAGAGCCCGTGCTGCCCCTGCCTCTGCATTTCACCGATTAGTGAAAACTACCATTTCTGGATCTTTCCAGTTAGACATAAAGTTCTACAAGATCCAGAACTACCCTAGAATCTTCATTTATAGACTCTGCCTTTGCCATGTTTCCCACTTTGCAAATCTTAATACTATAGATGGTGCGAGCATCGGCCCAGCTATTCATTCAGGGAAGCCACTCAAGAAATGGATGACAAATTCTGTTGCAGCTTCTGCTGTGGGACTAGTCCCCGATTCCTTTCCCCATTGCTGTTGCTTTAGTGAAGTCAGTCATCTCTTTTTCAGGTCTCTGGTTCTGGCTTCCCTTTCAGCCACTGTCCACTATTCTGAAGCATTGCTTCTTTGACCTAAGTCTGATACGGCACATTCAGGCCTTACACGGATCGCTGTACAGACTCCCCATTAG-CACAGcagggatcttcaaggag
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22639929 1501 +  28977278 CCTCCTGACca--gcagtgtcagcacccccagaggcagcgccacagtgccctttccctgaggtctgaacggtacttccggggctgtcactcttcctttctttcctgcactttcatctttgttggccaatctgctcttccagttgtttatttttgtaactttccgagtgggtttattactgggaacctacgaagcaagacgactacacgtggtgtttcccctacagaagccaaactgtgcttggggagg-------------ggttctgaagggagtgatgtggttggtcacggaccgccatgtgctcctggtgttcatgtagaggttggcgggcagaggcgccagcaccaatgtgtgcactttGAAGGCACGGTGATAACTGGAGTTTGAACTGTT-----ACTAAACTGTGAGCATTCAGGGCAGTGAAATCTCTCCAAGAACCCCCTTCACgtccaaccaacagcccccgggctgcaagcggcccaggacagctttgaatgtggcccaacacaaatttgtaaactttcttaaaacattatgaggtttttttgtgggtttctttttttt--gcca-ttttttttcctttagctcatcagcttttgttagtgttaatgtattttatgtgcagtccaagacagttcttcttcttccaatgtggcccaggaaagccaaaagattgggcactcctgATAACGTGTTTTGCTGGCATCACTGGGTGCTGGGAGAATTGGGATCCTGCAGAGTGAGGACTGCCCAGGGGTGTGACATCTGCACAGTTACAGCTGAAAAG--AGTTTCCTACAGTGGGGTTTACTGTCCACTGGGGACAGTGATGAGAAGAGTTCACCATGTAACTTTATTCTCAGGTGCAACTAAGTCCTGGACACATCCTGCTGTTCTGACACAGCTTCACTTCATGCTCTCACTGGGGCTACATGGACCTTGAACCCTGCCCCGTCAGCTTCTCCATTCCTCCTGACCTGTCGTGAGTCAAATCTGATGGCCTCATCCACAAAACCGATCCTTTTCTCTTTCCACTTGTCCTTCCTCATCTCAGTCCTCAGAGCCCGTGCTGCCCCTGCCTCTGCATTTCACCGATTAGTGAAAACTACCATTTCTGGATCTTTCCAGTTAGACATAAAGTTCTACAAGATCCAGAACTACCCTAGAATCTTCATTTATAGACTCTGCCTTTGCCATGTTTCCCACTTTGCAAGTCTTAATACTATAGATGGTGCGAGCATCGGCCCAGCTATTCATTCAGGGAAGCCACTCAAGAAATGGATGACAAATTCTGTTGCAGCTTCTGCTGTGGGACTAGTCCCCGATTCCTTTCCCCATTGCTGTTGCTTTAGTGAAGGCAGTCATCTCTTTTTCAGGTCTCTGGTTCTGGCTTCCCTTTCAGCCACTGTCCACTATTCTGAAGCATTGCTTCTTTGACCTAAGTCTGATATGGCACATTCAGGCCTTACACGGATCGCTGTACAGACTCCCCATTAG-CACAGcagggatcttcgaggag
i macNem1.NW_012012133v1    I 341 C 0
s cerAty1.NW_012000030v1      1909089 1507 +   8072957 CCTCCTGACca--gcagtgtcagcacccccagaggcagcgccacagtgccctttccctgaggtctgaacggtacttccggggctgtcactcttcctttctttcctgcactttcatctttgttggccaatctgctcttccagttgtttatttttgtaactttccgagtgggtttattactgggaacctacgaagcaagacgactacacgtggtgtttcccctacagaagccaaactgtgcttggggagg-------------ggttctgaagggagtgatgtggttggtcaccgaccaccatgtgctcctggtgttcatgtagaggttggcgggcagaggcgcgagcaccaatgtgtgcactttgaaggcacagtgataactggagtttgaactgtTACTAAACTAAACTGCGAGCATTCAGGGCAGTGAAATCTCTCCAAGAACCCCCTTCACgtccaaccaacagcccccgggctgcaagcggcccaggacagctttgaatgtggcccaacacaaatttgtaaactttcttaaaacattatgaggtttttttgtgggtttctttttttt--gccatttttttttcctttagctcatcagcttttgttagtgttaatgtattttatgtgcagtccaagacagtccttcttcttccaatgtggccccggaaagccaaaagattgggcactcctgATAACGTGTTTTGCTGGCATCACTGGGCGCTGGGAGAATTGGGATCCTGCAGAGTGAGGACTGCCCAGCGGTGTGGCATCTGCACAGTTACAGCTGAAAAG--AGTTTCCTACAGTGGGGTTTACTGTCCACTGGGGACAGTGATGAGAAGAGTTCACCATGTAACTTTATTCTCAGGTGCCACTAAGTCCTGGACACATCCTGCTGTTCTGACCCAGCTTCACCTCATGCTCTCACTGGGGCTACATGGACCTTGAACCCTGCCCCGTCAGCTTCTCCATTCCTCCTGACCTGTCGTGAGTCAAATCTGATGGCCTCATCCACAAAACCGATCCTTTTCTCTTTCCACTTGTCCTTCCTCATCTCAGTCCTCAGAGCCCGTGCTGCCCCTGCCTCTGCATTTCACCGATTAGTGAAAACTACCATTTCTGGATCTTTCCAGTTAGACATAAAGTTCTACAAGATCCAGAACTACCCTAGAATCTTCATTTATAGACTCTGCCTTTGCCATGTTTCCCACTTTGCAAATCTTAATACTATAGATGGTGCAAGCATCGGCCCAGCTATTCATTCAGGGAAGCCACTCAAGAAATGGATGACAAATTCTGTTGCAGCTTCTGCTGTGGGACTAGTGCCCGATTCCTTTCCCCATTGCTGTTGCTTTAGTGAAGGCGGTCATCTCTTTTTCAGGCCTCTGGTTCCGGCTTCCCTTTCAGCCACTGTCCACTATTCTGAAGCATTGCTTCTTTGACCTAAGTCTGATACGGCACATTCAGGCCTTACACGGATCGCTGTACAGACTCCCCATTAG-CACAGcagggatcttcaaggag
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102627059 1495 + 108555830 CCTCCTGACca--gcagtgtcagcacccccagaggcagcgccacagtgccctttgcctgaggtctgaacggtacttccggggctgtcactcttcctttctttcctgcactttggtctttgttggccaatctgctcttccagttgtttatttttgtaactttcccagtgggtttattactgggaacctacaaagcaagatgactacacgtggtgttgcccctacagaagccaaactgtgctcgggtagg-------------ggttctgaagggagtgatgtggttggtcaccgactgccatgtgctcctggtgttcatgtagaggttggcgggcagaggcgcgagcaccagtgtatgcactttGAAGGCACAGTGAAAACTGGAGTTTGAACTGTTACTAAACTAAACTGTGGGCATTCAGGGCAGTGAAATCTCTCCAAGAACCCCCTTCACgtccaaccaacagcccccgggctgcaagcggcccaggacagctttgaatgtggcccaacacaaatttgtaaactttcttaaaacatgatgaggtttttttgtaggtttcttttttttttgcca-ttttttttcctttagctcatcagcttttgttagtgttaatgtattttatgtgcagtccaagacagttcttcttcttccaatgtggcccaggaaagccaaaagattgggcactcctgATAACGTGTTTTGCTGGCATCACTGGGCGCTGGGAGAATTGGGATCCTGCAGAGTGAGGACTGCCCAGGGCTGTAGCATCTGCACAGTTACAGCTGAAAAGGCAGTTTCCCACAGTGGGCTTTACTGTCCACTGGGGACGGTGGTGAGAAGAG--------------TTATTCTCAGGTGCAACTAAGTCCTGGGCACATCCTGCTGTTCTGACGCAGCTTCACCTCATGCTCTCCCT-GGGCTACATGGACCTTGAACCCTGCCCCGTCAGCTTCTCCATTCCTCCTGACCTGTCGTGAGTCAAATCTGATGGCCTCATCCACAAAACCAATCCTTTTCTCTTTCCACTTGTCCTTCCTCATCTCAGTCCTCAGAGCCTGTGCTGCCCCTGCCTCTGCATTTCACCAATTAGTGAAAACTACCATTTCTGGATCTTTCCAGTTAGACATAAAGTTCTACAAGGTCCAGAACTACCCTAGAATCTTCATTTATAGACTCTGCCTTTGCCATGTTTCCCACTTTGCAAATCTTAATACTATAGATGGTGCGAGCATCGGCCCAGCTATTCATTCAGGGAAGCCACTCAAGAAATGGATGACAAATTCTGTTGCAGCTTCTGCTGTGGGACTAGTCCCCGACTCCTTTCCCCATTGCTGTTGCTTTAGTGAAGGCAGTCATCTCTTTTTCAGGTCTCTGGTTCTGGCATTACTTTCAGCCACTGTCCACTCTTCTGAAGCATTGCTTCTTTGACCTAAGTCTGATACGGCACATTCAGGCCTTACACGGATCGCTGTACAGACTCCCCATTAG-CACAGcagggatcttcaaggag
i chlSab2.chr12             I 341 C 0
s manLeu1.NW_012104154v1      2122030 1507 +   2144893 CCTCCTGACca--gcagtatcagcacccccagaggcagtgccacagtgccctttccctgaggtctgaacggtacttccagggctgtcactcttcctttctttcctgcactttcatctttgttggccaatctgctcttccagttgtttatttttgtaactttccgagtgggtttattactgggaacctacgaagcaagacgactacacgtggtgtttcccctacagaagccaaactgtgcttggggagg-------------ggttctgaagggagtgatgtggttggtcaccgaccgccatgtggtcctggtgttcatgtagaggttggcgggcagaggcgcgagcaccgatgtgtgcactttGAAGGCACAGTGATAACTGGAGTTTGAACTGTTACTAAACTAAACTGCGAGCATTCAGGGCAGTGAAATCTCTCCAAGAACCCCCTTCACgtccaaccaacagcccccgggctgcaagcggcccaggacagctttgaatgtggcccaacacaaatttgtaaactttcttaaaacattgtgaggtttttttgtgggtttctttttttttgccat-ttttttttcctttagctcatcagcttttgttagtgttaatgtattttatgtgcagtccaagacagtccttcttcttccaatgtggcccaggaaagccaaaagattgggcactcctgATAACGTGTTTTGCTGGCATCACTGGGCGCTGGGAGAATTGGGATCCTGCAGAGTGAGGACTGCCCAGCGGTGTGGCATCTGCACAGTTACAGCTGAAAAG--AGTTTCCTACAGTGGGGTTTACTGTCCACTGGGGACAGTGATGAGAAGAGTTCACCATGTAACTTTATTCTCAGGTGCAACTAAGTCCTGGACACATCCTGCTGTTCTGACCCAGCTTCACCTCATGCTCTCACTGGGGCTACATGGACCTTGAACCCTGCCCCGTCAGCTTCTCCATTCCTCCTGACCTGTCGTGAGTCAAATCTGATGGCCTCATCCACAAAACCGATCCTTTTCTCTTTCCACTTGTCCTTCCTCATCTCAGTCCTCAGAGCCTGTGCTGCCCCTGCCTCTGCATTTCACCAATTAGTGAAAACTACCATTTCTGGATCTTTCCAGTTAGACATAAAGTTCTACAAGATCCAGAACTACCCTAGAATCTTCATTTATAGACTCTGCCTTTGCCATGTTTCCCACTTTGCAAATCTTAATACTATAGATGGTGCAAGCATCGGCCCAGGTATTCATTCAGGGAAGCCACTCAAGAAATGGATGACAAATTCTGTTGCAGCTTCTGCTGTGGGACTAGTCCCCGATTCCTTTCCCCATTGCTG-TGCTTTAGTGAAGGCAGTCATCTCTTTTTCAGGTCTCTGGTTCCGGCTTCCCTTTCAGCCACTGTCCACTATTCTGAAGCATTGCTTCTTTGACCTAAGTCTGATACGGCACATTCAGGCCTTACACGGATCGCTGTACAGACTCCCCATTAG-CACAGcagggatcttcaaggag
i manLeu1.NW_012104154v1    I 343 C 0
e nomLeu3.chr6               75903756    0 + 121039945 C
e colAng1.NW_012115910v1      6775610    0 -   6934359 C

a score=264234.000000
s hg38.chr15_KI270851v1_alt     31311 88 +    263054 ggtgtgtacagcccagggaatgcccaa---gatcttttaaagtgtggaaaggaaattgtgaaaactctaattacactgattttcacctaaa
s gorGor5.CYUI01000350v1        34599 90 -    142253 ggtgtgtacagcccagggaacgcccaagatgatcttttaaagtgtggaaaggaaattgtgaaaattc-aattacactgattttcacctaaa
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108349857 91 + 111343173 ggtgtgaacagcccagggaatgcccgggattatctattaaggtgtggagaggaaattgtgggaactctaattacattgattgtcacctaaa
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106261135 91 + 112612857 ggtgtgaacagcccagggaatgcccgggattatctattaaggtgtggagaggaaattgtgggaactctaattacattgattgtcacctaaa
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22641430 91 +  28977278 ggtgtgaacagcccagggaatgcccgggattatctattaaggtgtggagaggaaattgtgggaactctaattacattgattgtcacctaaa
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1910596 91 +   8072957 ggtgtgaacagcccagggaatgcccgggattatctattaaggtgtggagaggaaattgtgggaactctaagtacattgattgtcacctaaa
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102628554 91 + 108555830 ggtgtgaacagcccagggaatgcccaggattatctattaaggtgtggagaggaaattgtgggaactctaattccattgattgtcacctaaa
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2123537 91 +   2144893 ggtgtgaacagcccagggaatgcccgggattatctattaaggtgtggagagaaaattgtgggaactctaattacattgattgtcacctaaa
i manLeu1.NW_012104154v1    C 0 C 0
s colAng1.NW_012115910v1      6775610 91 -   6934359 ggtgtgaacagcccagggaatgcccaggatcatctatcaaggtgtggaaaggaaattgtgaaaactctaattacactgattttcacctaaa
i colAng1.NW_012115910v1    C 0 I 22
e nomLeu3.chr6               75903756  0 + 121039945 C

a score=29392.000000
s hg38.chr15_KI270851v1_alt     31399 20 +    263054 ---taagaaTTTTTTAAAACAAT-
s gorGor5.CYUI01000350v1        34689 20 -    142253 ---taagaaTTTTTTTAAACAAT-
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108349948 22 + 111343173 caataagcatttta--aaaaaatt
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106261226 22 + 112612857 caataagcattttt--aaaaaatt
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22641521 22 +  28977278 caataagcattttt--aaaaaatt
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1910687 22 +   8072957 caataagcatttta--aaaaaatt
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102628645 22 + 108555830 ccataagaattttt--aaaaaatt
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2123628 22 +   2144893 caataagcattttt--taaaaatt
i manLeu1.NW_012104154v1    C 0 C 0
e nomLeu3.chr6               75903756  0 + 121039945 C
e colAng1.NW_012115910v1      6775701 22 -   6934359 I

a score=3396744.000000
s hg38.chr15_KI270851v1_alt     31419 1259 +    263054 ACTAGTGTTAGCTTAGTACATGATAGTATATGTATCTAATGCACGCTCATGTACAAATGAGTTACGATGTTCAAAATATGTTTACTGCTTGAGTTACCCCAAAAGCGTAAGGCAAAACTAGAACTAAAATAGGCATACCTTACAGTAACTTGTTTAGATTTGCAACAATAAACATAGTAGGAATCACATCCCAAATGTGTTTTCCATGTCCCTGTTTCCGAACCCCCAAAGTGCTGAGAAATGCACAATTACAGGTATCAGTGTCATTCAAGGACGTGGCTGGGGGTCCGCCAGGAGGATTGGCAGCGCTTGGGCCCTGTTCAGAGGACCCTG---TACCGCGATGTGATGCTGGACAACTGGAGACACCTCATCTCGGCACGAGCGGACTTGACGGCATGCAttttc-------------ttttttttcgagacacagtctcactctgtcacccaggctggagtgcagtggtgtgatctcagctcactgcaatctctgccc-----cccaggttgaagtgattctcatgcctcag--------cctcccgaatacctgggataacaggcatgcaccatcacacatggc----------------taatttttttgtgtttttagttgagacggggtttctccgtgttggccaggctggtctcaaactcctgacctcaggtgacccgtccacctcggcctcccaaagtgctgggattacaggcatgagctaccacacccggcTGCATTTCCTTTTTAATTGCAATGCATGTAGACCCTCTCCTGAGCTCAGGGCTGTTCAGTCCCGCGGATTCCccctgcatggcctggggttctcctcctcggggtatgagtctgtctatgtggctaataagccagtgctcatctcctctgtcaagtgtcgtgcgtgtgtgtgcagccatccccctaggcctagggcagaaaccctgctgacccagtggggtaaaggggaggcacctaaaacaCtcttcccacagtagccacagtgagtctgaaaaacctcacaccatgcgctctcctgaaagccctcctgtggctgttcctctcacacggcagagacaactccctcgcccacatccagggggctgcacacaggctggccctgttaccccgacttcagccctctccgctcactttcattgacacttgagccacaggtccttcctcctgggaaatagcgggccactctgctctccaggcatttatccctgctgtcaccccggcctgacattccctttccACACACAGCCATGCTCTCCAGGCATTTATCCCTGCTGTCACCCCC
s gorGor5.CYUI01000350v1        34709 1196 -    142253 ACTAGTGTTAGCTTAGTACATGATGGTATATGTATCTAATGCACGCTCATGTACAAATGAGTTACGATGTTCAAAATATGTTTACTGCTTGAGTTACCCCAAAAGCATAAGGCAAAACTAGAACTAAAATAGGCATACCTTACAGTAACTTGTTTAGATTTGCAACAATAAACATAGTAGGAATCACATCCCAAATGTGTTTTCCGTGTCCCTGTTTCCGAACCCCCAAAGTGCTGAGAAATGCACAATTACAGGTATCAATGTCATTCAAGGATGTGGCTGGGGGTCCGCCAGGAGGATTGGCAGCGCTTGGGCCCTGTTCAGAGGACCCTG---TACCACGATGTGATGCTGGACAACTGGAGACACCTCATCTTGGCACGAGCGGACTTGACAGCATGCAttttc-------------ttttttttcgagacacagtctcactctgtcacccaggctggagtgcagtggtgtgatctcagctcactgcaatctctgccc-----cccaggttgaagcgattctcctgcctcag--------cctcccgagtacctgggataacaggcatgcaccatcacacatggc----------------taatttttttgtagttttagttgagacggggtttctccatgttggccaggctggtctcaaactcctgacctcaggtgacctgtccaccttggcctcccagagtgctgggattacaggcatgagctaccacacccggcTGCATTTCCTTTTTAATTGCAATGCATGTAGACCCTCTCCTGAGCTCAGGGCTGTTCAGTCCCGCGGATTCCccctgcatggcctggggttctcctcctcggggtgtgagtctgtctatgtggctaataagccagtgctcatctcctctgtcaagtgtcatgcgtgtgtgtgcagccatccccctaggcctagggcagaaaccctgctgacccaatggagtaaaggggaggcacctaaaacaCTCTTCCcacagtagccacagtgagtctgataaacctcacaccatgcgctctcctgaaagccctcctgtggctgttcctctcacacagcagagacaactccctcgcccacatccagggggctgcacacaggctggccctgttacccccacttcagccctctccgctcactttcactgacacttgagccacaggtccttcctcctgggaaatagcaggccactctgctctaca---------------------------------------------------------------ggcatttatccctgctgtcaccccc
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108349970 1198 + 111343173 actagtgttatattagtacacgatagtatatgtgtctaatGCATGCACATGTACAAATGAGCTATGATGTCCAAAATATGTTTACTGCTTGAGTTATCCCCAAAGTATAAGGCAAAACTAGAACTAAAATAGGCATACCTTACAGCAACTTGTTTAAATTTGCAACAATAAACATAGTAAGAATCACATCCTAAATGTGTTTTCCATGT-CCTGTTTCTGAACCCCGTGAGTGCTGAGAAATGCACAGTTATAGGCATCAGTGTCATTCAGGGACGTGGCTGGGGTCCC-CCAGGAGGAGTGGCAGCACTTGGGCCCTGTTCAGAGGACCCTG---TACCACCATGTGATGGTGGACAACTGCAGCCACCTCATCTTGGCATGAGGGGACTTGACGGCGTGCAtttcc-tttttttttttttttttttttgagacagagtcttactctgtcacccaggctggagtgcagtggtgtgatcttagctcactgcaatctctgcct-----cccgggttcaagtgattcttgtgcctcag--------cttcctgagtagctgggactacaggcgtgcaccaccacgcctggc-----tatttttttttttttttttttgtatttttagtagagacaaggtttcgccatgttggccaggctggtctcgagctcctaacctcaggtgatccatccacctcggccttccaaagtgctgggattacaggcatgagcT--CATACCTGGCTGCATTTCCTTTTTAATTGCAATGCATGTAGACCCACTTCTAAGCTCAGGGCTGTTCAACCCTGCAGCTTCCccctgcatggtgtgggattctcctccctggggtgtgagtctacctatgtggctaataaacgggtgctcacctcctccatgcagtgtcaggcatatgtgtgcagccatcctcctaggcctagggcaggaatcctcctgccccaatggggtaaaggggaggcacctgaaacaCTCTTCCCTcagcagccacagagagcctgataaacttcacagcacgtgctctcccgaaaatcctccagtggccattcctctcacccagcagagacacctccctcgcccacatccatagggccgcacacagcctggccctgttacctccacttcaaccctctgcgctcaccttcactgacacttgagccacagttccttcctcctgggaaatag-----------------ca---------------------------------------------------------------ggcatttatccctgctgtcccctcg
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106261248 1195 + 112612857 aCTAGTGTTATATTAGTACACGATAGTATATGTGTCTAATGCATGCACATGTACAAATGAGCTATGATGTCCAAAATATGTTTACTGCTTGAGTTATCCCCAAAGTATAAGGCAAAACTAGAACTAAAATAGGCATACCTTACAGCAACTTGTTTAAATTTGCAACAATAAACATAGTAAGAATCACATCCTAAATGTGTTTTCCATGT-CCTGTTTCTGAACCCCGTGAGTGCTGAGAAATGCACAGTTATAGGCATCAGTGTCATTCAGGGACGTGGCTGGGGTCCC-CCAGGAGGAGTGGCAGCACTTGGGCCCTGTTCAGAGGACTCTGTATTACCACCATGTGATGGTGGACAACTGCAGCCACCTCATCTCGGCATGA-GGGACTTGACGGCGTGCAtttcc-tttttttttttttttttttttgagacagagtcttactctgtcacccaggctggagtgcagtggtgtgatcttagctcactgcaatctctgcct-----cccgggttcaagtgattcttgtgcctcagcttcctgacttcctgagtagctgggactacaggcgcccgccaccgcacctggc------------------taatttttgtatttttagtagagacaaggtttcgccatgttggccaggctggtctcgagctcctaacctcaggtgatccatccacctcggccttccaaagtgctgggattacaggcatgagcT--CATACCTGGCTGCGTTTCCTTTTTAATTGCAATGCATGTAGACCCATTTCTAAGCTCAGGGCTGTTCAACCCTGCAGCTTCCccctgcatggtgtgggattctcctccctggggtgtgagtctatatatgtggctaataaacgggtgctcacctcctccatgcagtgtcaggcatgtgtgtgcagccatgcccctaggcctagggcaggaatcttcctgccccaatggggtaaaggggaggcacctgaaacaCTCTTCCCTcagcagccacagagagcctgataaacttcagagcacgtgctctcccgaaaatcctccagtggccattcctctcacccagcagagacacctccctcgcccacatccatagggccgcacacagcctggccctgttacctccacttcaaccctctgcgctcaccttcactgacacttgagccacagttccttcctcctgggaaatag-----------------ca---------------------------------------------------------------ggcatttatccctgctgtccccccg
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22641543 1196 +  28977278 actagtgttatattagtacacgatagtatatgtgtctaatGCATGCACATGTACAAATGAGCTATGATGTCCAAAATATGTTTACTGCTTGAGTTATCCCCAAAGTATAAGGCAAAACTAGAACTAAAATAGGCATACCTTACAGCAACTTGTTTAAATTTGCAACAATAAACATAGTAAGAATCACATCCTAAATGTGTTTTCCATGT-CCTGTTTCTGAACCCCGTGAGTGCTGAGAAATGCACAGTTATAGGCATCAGTGTCATTCAGGGACGTGGCTGGGGTCCC-CCAGGAGGAGTGGCAGCACTTGGGCCCTGTTCAGAGGACTCTG---TACCACCATGTGATGGTGGACAACTGCAGCCACCTCATCTCGGCATGA-GGGACTTGACGGCGTGCAtttcc--ttttttttttttttttttttgagacagagtcttactctgtcacccaggctggagtgcagtggtgtgatcttagctcactgcaatctctgcct-----cccgggttcaagtgattcttgtgcctcag--------cttcctgagtagctgggactacaggcatgcaccaccacacctggc-----tttttttttttttttttttttgtatttttagtagagacaaggtttcgccatgttggccaggctggtctcgagctcctaacctcaggtgatccatccacctcggccttccaaagtgctgggattacaggcatgagcT--CATACCTGGCTGCATTTCCTTTTTAATTGCAATGCATGTAGACCCATTTCTAAGCTCAGGGCTGTTCAACCCTGCAGCTTCCccctgcatggtgtgggattctcctccctggggtgtgagtctatctatgtggctaataaacgggtgctcacctcctccatgcagtgtcaggcatgtgtgtgcagccatccccctaggcctagggcaggaatcctcctgccccaatggggtaaaggggaggcacctgaaacaCTCTTCCCTcagcagccacagagagcctgataaacttcagagcacgtgctctcccgaaaatcctccagtggccattcctctcacccagcagagacacctccctcgcccacatccatagggccgcacacagcctggccctgttacctccacttcaaccctctgcgctcaccttcactgacacttgagccacagttccttcctcctgggaaatag-----------------ca---------------------------------------------------------------ggcatttatccctgctgtcccccca
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1910709 1196 +   8072957 actagtgttatattagtacacgatagtatatgtgtctaatGCATGCACATGTACAAATGAGCTATGATGTCCAAAATATGTTTACTGCTTGAGTTATCCCCAAAGTATAAGGCAAAACTAGAACTAAAATAGGCATACCTTACAGCAACTTGTTTAAATTTGCAAC----AACATAGTAAGAATCACATCCTAAATGTGTTTTCCATGT-CCTGTTTCTGAACCCCGTGAGTGCTGAGAAATGCACAGTTATAGGCATCAGTGTCATTCAGGGACGTGGCTGGGGTACC-CCAGGAGGAGTGGCAGCACTTGGGCCCTGTTCAGAGGACTCTG---TACCACCATGTGATGGTAGACAACTGCAGCCACCTCATCTCGGCATGAGGGGACTTGACGGCGTGCAtttcc----ttttttttttttttttttgagacagagtctcactctgtcacccaggctggagtgcagtggtgtgatcttagctcactgcaatctctgcct-----cccgggttcaagtgattcttgtgcctcag--------cttcctgagtagctgggactacaggcatgcaccaccacgcctggctattttttttttttttttttttttttgtatttttagtagagacaaggtttcgccatgttggccaggctggtcttgagctcctaacctcaggtgatccatccacctcggccttccaaagtgctgggattacaggcatgagcT--CATACCTGGCTGCATTTCCTTTTTAATTGCAATGCATGTAGACCCACTTCTAAGCTCAGGGCTGTTCAACCCTGCAGCTTCCccctgcatggtgtgggattctcctccctggggtgtgagtctatctatgtggctaataaaccggtgcttacctcctccatgcagtgtcaggcatatgtgtgcagccatcctcctaggcctagggcaggattcctcctgccccaatggggtaaaggggaggcacctgaaacaCTCTTCCCTCAGCAGCCACAGAGAGCCTGATAAACTTCACAGCACGTGCTCTCCCGAAAACCCTCTGGTGGCCATTCCTCTCACGCAGCAGAGACACCTCCCTCGCCCACATCCATAGGGCCGCACGCAGCCTGGCCCTGTTACCTCCACTTCAACCCTCTGCGCTCACCTTCACTGACACTTGAGCCACAGGTCCTTCCTCCTGGGAAATAG-----------------CA---------------------------------------------------------------GGCATTTATCCCTGCTGTCCCCCCG
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102628667 1200 + 108555830 aCTAGTGTTATATTAGTACACGATAGTATATGTGTCTAATGCATGCACATGTACAAATGAGCTACCATGTCCAAAATATGCTTACTGCTTGAGTTACCTCCAAAGTATGAGGCAAAACTAGAACTAAAATAGGCATACCTTATAGCAACTTGTTTAAATTTGCAACAATAAACATAGTAAGAATCACATCCTAAATGTGTTTTCCATGT-CCTGTTTCTGAACCCCCTGAGTGCTGAGAAATGCACAGTTACAGGCATCAGTGTCATTCAAGGAGGTGGCTGGGGTCCC-CCAGGAGGAGTGGCAGCACTTGGGCCCTGTTCAGAGGACTCTG---TACCACCATGTGACGGCGGACAACTGCAGCCACCTCATCTCGGCATGAGTGGACTTGACGGCGTGCATTGCCttttttttttttttttttttttgagac--agtcttactctgtcacccaggctagagtgcagtggtgtgatcttggctcactgcaatctctgcct-----cccgggtttaagtgattcttgtgcctcag--------cttcctgagtagctgggactacaggcgtgcaccacaacgcctggc-cattttttttttttttttttttttggtatttttagtagagacggggtttcgccgtgttggccaggctggtctcgaactcctgacctcaggtgatccgtccacctcggccttccaaagtg-tgggattacaggcatgagcT--CATACCTGGCTGCATTTCCTTTTTAATTGCAATGCATGTAGACCCTCTTCTGAGCTCAGGGCTGTTCAACCCTGCGGCTTCCccctgcatggtgtgggattctcctccctggggtgtgagtctatctatgtggctaataaacgggtgctcacctcctccatgcagtgtcaggcatatgtgtgcagccatcctcctaggcctagggcaggaatcctcctgccccaatggggtaaaggggaggcacctgaaacaCTCTTCCCACAGCAGCCACAGTGAGCCTGATAAACTTCACAGCACGTGCTCTCCCGAAAGCCCTCCGGTGGCCATTCCTCTCACCCAGCAGAGACACCTCCCTCGCCCACATCCATAGGGCCGCACACAGCCTGACCCTGTTACCTCCTCTTCAACCCTCTGCGCTCACCTTCACTGACACTTGAGCCACAGGTCCTTCCTCCTGGGAAATAG-----------------CA---------------------------------------------------------------GGCATTTATCCCTGCTGTCCCCCCG
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2123650 1193 +   2144893 actagtgttatattagtacacgatagtatatgtgtctaatGCATGCACATGTACAAATGAGCTACAATGTCCAAAATATGTTTACTGCTTGAGTTATCCCCAAACTATAAGGCAAAACTAGAACTAAAATAGGCATACCTTACAGCAACTTGTTTAAATTTGCAACAATAAACATAGTAAGAATCACATCCTAAATGTGTTTTCCATGT-CCTGTTTCTGAACCCCGTGAGTGCTGAGAAATGCACAGTTATAGGCATCAGTGTCATTCAGGGACGTGGCTGGGGTCCC-CCAGGAGGAGTGGCAGCACTTGGGCCCTGTTCAGAGGACTCTG---TACCACCATGTGATGGTAGACAACTGCAGCCACCTCATCTCGGCATGAGGGGACTTGACGGCGTGCAtttcc---tttttttttttttttttttgagacagagtctcactctgtcacccaggctggagtgcagtggtgtaatcttagctcactgcaatctctgcct-----cccgggttcaagtgattcttgtgcctcag--------cttcctgagtagctgggactacaggcgtgcaccaccatgcctggc--------ttttttttttttttttttgtatttttagtagagacaaggtttcgccatgttggccaggctggtctcgagctcctaatctcaggtgatccatccacctcggccttccaaagtgctgggattacaggcatgagcT--CATACCTGGCTGCATTTCCTTTTTAATTGCAATGCATGTAGACCCACTTCTAAGCTCTGGGCTGTTCAACCCTGCAGCTTCCccctgcatggtgtgggattctcctccctggggtgtgagtctatctatgcggctaataaaccggtgcttacctcctccatgcagtgtcaggcatatgtgtgcagccatcctcctaggcctagggcaggattcctcctgccccattggggtaaaggggaggcacctgaaacaCTCTTCCCTCAGCAGCCACAGAGAGCCTGATAAACTTCACAGCACGTGCTCTCCCGAAAACCCTCTGGTGGCCATTCCTCTCACCCAGCAGAGACACCTCCCTCGCCCACATCCATAGGGCCGCACACAGCCTGGCCCTGTTACCTCCACTTTAACCCTCTGCGCTCACCTTCACTGACACTTGAGCCACAGGTCCTTCCTCCTGGGAAATAG-----------------CA---------------------------------------------------------------GGCATTTATCCCTGCTGTCCCCCCG
i manLeu1.NW_012104154v1    C 0 C 0
s colAng1.NW_012115910v1      6775723 1198 -   6934359 agtagtgttatcttagtacatgatagtatatgtatctaatGCAAGTGCAGGTACAAATGAGTTACGATGTCCAAAATATGTTTACTGCTTGAGTTA-CCGGAAAGTATAAGGCAAAACTAGAACTAAAAAAGGCATACCTTATAGCAACTTATTT-AATTTGCAACTATAAACATAGTAGGCATCACATCCCAAAT-TGTTTTCCATGTCCCTGTTTCTGAAACCCCAGAGTGCTGAGAAATG--CAGTTACAGGCATCAGTGTCATTCAAGGACGTGGCTGGGGGTCC-T--ACAGGAGTGGCAGCACTTGGACCCTGTTGAGAGGACCCTG---TACTGCGATGTGATGCTGGACAACTGGAGCCACCTCGTCTTGGCACGAGCAAACTTGACGGCGTGCAttttc--------tttttttttttttcgagacagagtctcactctgtcacccaggctggagtgcagtggtgcgatcttggctcaatgcagtctctgcctcccgccccgggttcaagcagttctcatgcctcag--------cctcccgagtacctggaataacaggtatgcaccatcacacctgac--------------tatattttttttgtatttttagtagagacagggtttcaccatgttggctagactggtctcgaactcctgacctcaggtgatccgtccacctcggtctccataagtgccgggactacaggcatgagctaccatacctggTTGCATTTCCTTTTTAATTGCAGTGCATGTAGACCCTCTCCTGAGCTCAGGGCTGTTCAGCTCCGCAGCTTCCGCCCGCATGGCCtggggttctcctcctcggggtgtgagtctatctatgtggctaataaaccggtgctcatctcctcggtccagtgtcaggca--tgtgtgcagccatccccctaggcctggggcaagaacgctgccgccccagtggggtaaagtgaaggcaccgaaaacaCTCTTCCCACAGTAGCCACAGTGAGCCTGATAAACCTCACACCATATGTTCTCCCGAAAGCCCCCCTGTGGCCGTTCCTCTCACTCAGCACAGACAGCTCCCTCACCCACATCCAGGGTGCCGCACACAGCCTGGCCCTATTACCCTCACTTCAGCCCTCTCCAGTCACATTCACTGACACTTGAGCCACAGTTCCTTCCTCCTGGGAAATAGCAGGCCACTCTGCTCTCCA---------------------------------------------------------------GGCATTTATCCCTGCTGTCACCCCC
i colAng1.NW_012115910v1    I 22 C 0
e nomLeu3.chr6               75903756    0 + 121039945 C

a score=349952.000000
s hg38.chr15_KI270851v1_alt     32678 76 +    263054 GCCTGACATTCCCTTTCCACACACAGCCACGTCACCATCCTCACTCCCTTCAGAACCATATCCCAATGTCAGCC-TT
s gorGor5.CYUI01000350v1        35905 76 -    142253 gcctgacattccctttccACACACAGCCATGTCACCATCCTCACTCCCTTCAGCACCATATCCCAATGTCAGCC-TT
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108351168 77 + 111343173 acctgacatgccctttccacacatagccatgtcaccatcctcactcccttcacagccatatcccaacatcagccttt
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106262443 77 + 112612857 acctgacatgcccttgccacacatagccacgtcaccatcctcactcccttcacagccatatcccaacatcagccttt
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22642739 77 +  28977278 acctgacatgccctttccACACATAGCCACGTCACCATCCTCACTCCCTTCACAGCCATATCCCAACATCAGCCTTT
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1911905 77 +   8072957 ACCTGACATGCCCTTTCCACACATAGCCACGTCACCATCCTCACTCCCTTCACAGCCATATCCCAACATCAGCCTTT
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102629867 77 + 108555830 ACCTGACATGCCCTTTCCACACATAGCCAGGTCACCATCCTCACTCCCTTCACACCCATATCCCAACGTCAGCCTTT
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2124843 77 +   2144893 ACCTGACATGCCCTTTCCACACATAGCCACGTCACCATCCTCACTCCCTTCACAGCCATATCCCAGCATCAGCCTTT
i manLeu1.NW_012104154v1    C 0 C 0
s colAng1.NW_012115910v1      6776921 77 -   6934359 ACCTGACATGCCCTTTCCACACACAACCACGTCACCATCCTCACTCCCTTCAGAACCATATCCCAACATCGCCCTTT
i colAng1.NW_012115910v1    C 0 C 0
s calJac3.chrUn_GL286352         3623 73 -     21860 gcCTGATGTGCCCTTTCCACACACAGCCAC-CCACCATCC--TCAGTTTTCAGAACCACATCCCAATGTCAGCCTT-
i calJac3.chrUn_GL286352    N 0 I 1
s saiBol1.JH378203            2609274 75 -   8192610 gcCTGACATGCCCTGTCCACACACAGCCAC-CCACCATCCTGTCTCTCTTCAGAACCACATCCCGATGTCAGCCTT-
i saiBol1.JH378203          N 0 I 1
s cebCap1.NW_016107368v1      7142949 75 +   9895066 gcCTGACGTGCCCTATCCACACACAGCCAC-CCACCATCCTCTGTCTCTTCAGAACCACATCCCGATGTCAGCCTT-
i cebCap1.NW_016107368v1    N 0 I 59
e nomLeu3.chr6               75903756  0 + 121039945 C

a score=180363.000000
s hg38.chr15_KI270851v1_alt     32754 46 +    263054 ACATAGCTCTTGCCATCACTTTCTCGAGC------------CCCTAGCTGGCACTCCA
s gorGor5.CYUI01000350v1        35981 46 -    142253 ACATAGCTTTTGCCATCACTTTCTCAAGC------------CCCTAGCTGGCACTCCA
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108351245 46 + 111343173 ccacagcttttgccatcactctctcgagc------------ccccagctggcactcca
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106262520 46 + 112612857 ccacagcttttgccatcactctctccagc------------ccccagctggcactcca
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22642816 46 +  28977278 CCACAGCTTTTGCCATCACTCTCTCCAGC------------CCCCAGCTGGCACTCCA
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1911982 46 +   8072957 CCACAGCTTTTGCCATCACTCTCTCCAGC------------CCCCAGCTGGCATTCCA
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102629944 46 + 108555830 CCACAGCTTTTGCCATCACTCTCTCCAGC------------CCCCAGCTGGCACTCCA
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2124920 46 +   2144893 CCACAGCTTTTGCCATCACTCTCTCCAGC------------CCCCAGCTGGCACTCCA
i manLeu1.NW_012104154v1    C 0 C 0
s colAng1.NW_012115910v1      6776998 46 -   6934359 CCACAGCTTTTGCCATCACTGTATCAAGC------------CCCCAGCTGGCACTCCA
i colAng1.NW_012115910v1    C 0 C 0
s calJac3.chrUn_GL286352         3697 58 -     21860 CCACAACTTTTGCCATCACTCTCTCGAACACTGCCCCTGCGCCCCAGCTCACACTCTG
i calJac3.chrUn_GL286352    I 1 C 0
s saiBol1.JH378203            2609350 57 -   8192610 CCACAGC-TTCGCCATCGCTCTGTTGAACACCGCCCCCACGCCCCAGCTCACACTCTG
i saiBol1.JH378203          I 1 C 0
e cebCap1.NW_016107368v1      7143024 59 +   9895066 I
e nomLeu3.chr6               75903756  0 + 121039945 C

a score=4233411.000000
s hg38.chr15_KI270851v1_alt     32800 880 +    263054 TGTCCCTCGTCCTGCCCTTCACCTGCTCCACTTTCCTCCATGGAACTCCCTGATGATGTGCCACGTGCTCTACTCATTCATTTTGCTTTTTTCCTCTGTCTGCCCAGCTGGAGAGAATTTTGTGCTCAGCAAAAATGTTTGTGGCTCGCAAAGGGTGTGGCCGTGTTCTAGCCTCCCTGCCCCACTGGGACCGCGTGTCTCCCTTTGCCCCTC---CCCT-----------GTCTGCTGTGGGTGCAGAAGGCTGTCCTTCGTGTGTTGACTCAGTCTGCCCTGGGGCTGGGCCCA-------------GAAAGCCCCAAGCCCAGAAGCCATTTTCACTGCCAGTGTGGACTTGGTGGATGAGCTCAGCTACCAGAACCCTGCTGGATCATCTCCAAGAGCCAATCATCTCAGGGACCCTGAAGTCGACTGTGGAACAGCTGCCAACACAGCTTTGAAATGCTCAGCAATATGAAGAGTGCTGACAGCCCCTGCCTGCTGAGGCACACGGGGCTATGGTATTTCACTTCTATTATAGTAACATGACTTTAGTTGAGGATGGGATGAAAGAATAAAGATGcagcctgggcaatatagtgagcccccatttctacaaagaataaaaaatttatccaggcaaggtgcacctgtagtcccagcaactctggagactgat---ggaggatggcttgaacttgggaggtcaaggatgtagtgagctgtgatcatgccactgcactccaacctgggtgccagagaaaga--ctgtctc-----aaaaaaaaaaaaaga-----gaaagagagaa-taaaAAAAGATTAATTCATCATCTTGGACAT-AAACAATATTTTCTTGAGTGTTACTCAGATGTGTTTTTACTTCCTGCCCTTCCAAGAAAAATACTGGTAATGGCTCTGCCTCT
s gorGor5.CYUI01000350v1        36027 878 -    142253 TGTCCCTCATCCTGCCCTT---CTGCTCCACTTTCCTCCATGCAACTCCCTGATGATGTGCCACGTGCTCTACTCATTCATTTTGCTTTTTTCCTCTGTCTGCCCAGCTGGAGGGAATCTTGTGCTCAGCAAAAATGTTTGTGGCTCGCAAAGGGTGTGACCGTGTTCTAGCCTCCCTGCCCCACTGGGACCGCGTGTCTCCCTTTGCCCCTC---CCCT-----------GTCTGCTGTGGGTGCAGAAGGCTGTCCTTCGTGTGTTGACTCAGTCTGCCCTGGGGCTAGGCCCA-------------GAAAGCCCCAAGCCCAGAAGCCATTTTCACTGCCAGTGTGGACTTGGTGGATGAGCTCAGCTACCAGAACCCTGCTGGATCATCTCCAAGAGCCAATCATCTCAGGGACCCTGAAGTCGACTGTGGAACAGCTGCCAACACAGCTTTGAAATGCTCAGCAATATGAAGAGTGCTGACAGCCCCTGCCTGCTGAGGCACACGGGGCTATGGTATTTCACTTCTATTACAGTAACATGACTTTGGTTGAGGATGGGATGAAAGGATAAAGATGcagcctgggcaatatagtgagcccccatttctacaaagaataaaaaatttatccaggcaaggtgcacctgtagtcccagcaactctggagactgat---ggaggatggcttgaacttgtgaggtcaaggatgtagtgagctgtgatcatgccactgcactccaacctgggtgccagagaaaga--ctgtctc-----aaaaaaaaaaaaaga-----gaaagagagaaTTAAAAAAAGATTAATTCATCATCTTGGACAT-AAACAATATTTTCTTGAGTGTTACTCAGATGTGTTTTTACTTCCTGCCCTTCCAAGAAAAATACTGGTAATGGCTCTGCCTCT
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108351291 878 + 111343173 tgtccctcatcctgcctttctcctgctccattttcctccatagaactccctgctgatgtgccatgtactctaccgattcattttgc--ttttcctctgtctgcccAACTGGAGGGAATTTTCTGCTCAGCAAAAATGTTTGTGGCTCACAAACGGTGTGGCCGTGTTCTAGCCTCCCTGCTCCTTCTGGACTGCGCGTCTCCCCTTGCCCCTC---CCGCGGCACAGCCGGGTCAGCTGTGGTTGCAGAAGGCTGTCCTTTGCATGTTGGCTCAGCCTACCCTGGGGCTGGGCCCA-------------GGAAGCCCCAAGCCCAGAAGTCATTTTCACTGCCAGTGTGGACTTGCTGGATTAGCTCACCTACCAGAACCCTGCTGGATCATCTCCAAGAGCCA---GTCTCAGGGACCCTGAGGCCGACTGTGGAGCAGCTGTCAACATGGTTTTGAAACGCTCAGCCATGTGAAGAGTGCTGGCAGCCGCTGCCTGCTGAGGCGCACGCGGCTACGGTATCTCACTTCTGTTACAGGAACATGGCTTTGCTTGAGGAAGGGATGAAAGAATAAAGATGcagcctgggcaacatagtgaa-ctccatctctacaaaaagtaaaaaatttagccaggcatgctgcacctgtagtcccggtgactcgggagactgaggcgggaggacagcttgagcttgggagatcaaggatgttgtgagctgtgatcgcgccactgcactccaacctgggtgatagagcaagactctgtctc------------aaaaaaaa-----aaaaaaaagaa-agaataaaGATTAAT------TCTTGTACTTAAAAAAATATTTTCTTGAGTGTTACTCAGATGTGTTTTTACTTCCTGCCCTTCCAATAAAAATACGAGTGATGGTTCTGCCTCT
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106262566 889 + 112612857 tgtccctcatcccgcctttctcctgctccattttcctccatagaactccctgctgatgtgccatgtactctaccgattcattttgc--ttttcctctgtctgcccAACTGGAGGGAATTTTCTGCTCAGCAAAAATGTTTGTGGCTCACAAACAGTGTGGCCGTGTTCTAGCCTCCCTGCCCCATCTGCACTGCGCATCTCCCCTTGCCCCTC---CCCCGGCACAGCCAGGTCAGCTGTGGTTGCAGAAGGCTGTCCTTTGCATGTTGGCTCAGCCTACCCTGGGGCTGGGCCCA-------------GGAAGCCCCAAGCCCAGAAGTCATTTTCACTGCCAGTGTGGACTTGCTGGATTAGCTCACCTACCAGAACCCTGCTGGATCATCTCCAAGAGCCA---GTCTCAGGGACCCTGAGGCCGACTGTGGAGCAGCTGTCAACATGGTTTTGAAACGCTCAGCCATGTGAAGAGTGCTGGCAGCCGCTGCCTGCTGAGGCGCATGCGGCTACGGTATCTCACTTCTGTTACAGTAACATGGCTTTGCTTGAGGACGGGATGAAAGAATAAAGATGcagcctgggcaacatagtgaa-ccccatctctacaaaaagtaaaaaatttagccaggcatgctgcacctgtagtcccagtgactcgggagactgaggcgggaggatggcttgagcttgggagatcaaggatgttgtgagctgtgatcgcgccactgcactccaacctgggtgatagagcaagactctgtctc------aaaaaaaaaaaaaa-----aaagaaaagaa-agaaTAAAGGTTAATTCATCATCTTGGACAT-AAAAAATATTTTCTTGAGTGTTACTCAGATGTGTTTTTACTTCCTGCCCTTCCAAGAAAAATACTAGTGATGGTTCTGCCTCT
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22642862 895 +  28977278 TGTCCCTCATCCCGCCTTTCTCCTGCTCCATTTTCCTCCATAGAACTCCCTGCTGATGTGCCATGTACTCTACCGATTCATTTTGC--TTTTCCTCTGTCTGCCCAACTGGAGGGAATTTTCTGCTCAGCAAAAATGTTTGTGGCTCACAAACAGTGTGGCCGTGTTCTAGCCTCCCTGACCCATCTGGACTGCGCATCTCCCCTTGCCCCTC---CCCCGGCACAGCCAGGTCAGCTGTGGTTGCAGAAGGCTGTCCTTTGCATGTTGGCTCAGCCTACCCTGGGGCTGGGCCCA-------------GGAAGCCCCAAGCCCAGAAGTCATTTTCACTGCCAGTGTGGACTTGCTGGATTAGCTCACCTACCAGAACCCTGCTGGATCATCTCCAAGAGCCA---GTCTCAGGGACCCTGAGGCCGACTGTGGAGCAGCTGTCAACATGGTTTTGAAACGCTCAGCCATGTGAAGAGTGCTGGCAGCCGCTGCCTGCTGAGGCGCACGTGGCTACGGTATCTCACTTCTGTTACAGTAACATGGCTTTGCTTGAGGACGGGATGAAAGAATAAAGATGcagcctgggcaacatagtgaa-ccccatctctacaaaaagtaaaaaatttagccaggcatgctgcacctgtagtcccagtgactcgggagactgaggcgggaggatggcttgagcttgggagatcaaggatgttgtgagctgtgatcgcgccactgcactccaacctgggtgatagagcaagactctgtctcaaaaaaaaaaaaaaaaaaaa-----aaagaaaaGAA-AGAATAAAGGTTAATTCATCATCTTGGACAT-AAAAAATATTTTCTTGAGTGTTACTTAGATGTGTTTTTACTTCCTGCCCTTCCAAGAAAAATACTAGTGATGGTTCTGCCTCT
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1912028 878 +   8072957 TGTCCCTCATCCTGCCTTTCTCCTGCTCCGTTTTCCTCCATAGAACTCCCTGCTGATGTGCCATGTACTCTACCGATTCATTTTGC--TTTTCCTCTGTCTGCCCAACTGGAGGGAATTTTCTGCTCAGCAAAAATGTTTGTGGCTCACAAACGGTGTGGCCGTGTTCTAGCCTCCCTGCCCCATCTGGACTGCGCGTCTCCCCTTACCCCTC---CCGCGGCACAGCCAGGTCAGCTGTGGTTGCAGAAGGCTGTCCTTTGCATGTTGGCTCAGCCTACCCTGGGGCTGGGCCCA-------------GGAAGCCCCAAGCCCAGAAGTCATTTTCACTGCCAGTGTGGACTTGCTGGATTAGCTCACCTACCAGAACCCTGCTGGATCATCTCCAAGAGCTA---GTCTCAGGGACCCTGAGGCCGACTGTGGAGCAGCTGTCAACATGGTTTTGAAACGCTCAGCCATGTGAAGAGTGCTGGCAGCCGCTGCCTGCTGAGGCGCACGCGGCTATGGTACCTCACTTCTGTTACAGTAACATGGCTTTGCTTGAGGAAGGGATGAAAGAATAAAGATGcagcctgggcaacatagtgaa-ccccatctctacaaaaagtaaaaaatttagccaggcatgctgcacctgtagtcccagtgacttgggagactgaggcgggaggatggcttgagcttgggagatcaaggatgttgtgagctgtgatcgcgccactgcactccaacctgggtgatagagcaagactctgtctc------------aaaaaaaa-----aaaaaaaagaa-agaataaaGATTAAT------TCTTGTACTTAAAAAAATATGTTCTTGAGTGTTACTCAGATATGTTTTTACTTCCTGCCCTTCCAATAAAAATACGAGTGATGGTTCCGCCTCT
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102629990 895 + 108555830 TGTCCCTCATCCTGCCTTTCTCCTGCTCCATTTTCCTCCATGGAACTCCCTGCTGATGTGCCATGCACTCTACTGATTCATTTTGC--TTTTCCTCTGTCTGCCCAACTGGAGGGAATTTTCTGCTCAGCAAAAATGTTTGTGGCTCACAAACGGTGTGGCCGTGTTCTAGCCTCCCTGCCCCATCGGGACTGTGCGTCTCCCCTTGCCCCTC---CCGCGGCACAGCCAGGTCGGCTGTGGTTGCAGAAGGCTGTCCTTTGCGTGTTGGCTCAGCCTACCCCAGGGCTGGGCCCA-------------GGAAGCCCCAAGCCCAGAAGTCATTTTCACTGCCAGTGTGGACTTGCTGGATTAACTCAGCTACCAGAACCCTGCTGGATCATCTCCAAGAGCCA---GTCTCAGGGACCCTGAGGCCGACTGTGGAGCAGCTGTCAACATGGTTTTGAAACACTCAGCCATGTGAAGAGTGCT-CCAGCCCCTGCCTGCTGAGGCACATGCGGCTACGGCATCTCACTTCTATTACAGTAACATGGCTTTGCTTGAGGAGGGGATGAAAGAATAAAGATGcagcctgggcaacatagtgaa-ccccatctctacaaaaagtaaaaaatttagccaggcatggtgcacctgtagtcccagtgactcaggagactgaggcgggaggatggcttgagcttgggagatcaaggatgttgtgagctgagatcgcgccactgcactccaacctgggtgatagagcaagactctaaaaa-----aaaaaaaaaaagaaaagaagaaagaaAAGAA-AGAATAAAGATTAATTCATCATCCTGGACATAAAAACATATTTTCTTGAGTGTTACTCAGATGTGTTTTTACTTCCTGCCCTTCCAAGAAAAATACTAGTGATGGCTCTGCCTCT
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2124966 884 +   2144893 TGT-CCTCATCCTGCCTTTCTCCTGCTGCGTTTTCCTCCATAGAACTCCCTGCTGATGTGCCATGTACTCTACCGATTCATTTTGC--TTTTCCTCTGTCTGCCCAACTGGAGGGAATTTTCTGCTCAGCAAAAATGTTTGTGGCTCACAAACGGTGTGGCCGTGTTCTAGCCTCCCTGCCCCATCTGGACTGCGCGTCTCCCCTTACCCCTC---CCGCGGCACAGCCAGGTCAGCTGTGGTTGCAGAAGGCTGTCCTTTGCATGTTGGCTCAGCCTACCCTGGGGCTGGGCCCA-------------GGAAGCCCCAAGCCCAGAAGTCATTTTCACTGGCAGTGTGGACTTGCTGGATTAGCTCACCTACCAGAACCCTGCTGGATCATCTCCAAGAGCCA---GTCTCAGGGACCCTGAGGCCGACTGTGGAGCAGCTGTCAACATGGTTTTGAAACGCTCAGCCATGTGAAGAGTGCTGGCAGCCGCTGCCTGCTGAGGCGCACGCGGCTATGGTATCTCACTTCTGTTACAGTAACATGGCTTTGCTTGAGGAAAGGATGAAAGAATAAAGATGcagcctgggcaacacagtgaa-ccccatctctacaaaaagtaaaaaatttagccaggcatgctgcacctgtggtcccggtgactcgggagactgaggcgggaggacggcttgagcttgggagatcaaggatgttgtgagctgtgatcgcgccactgtactccaacctgggtgatagagcaagactctgtctc-----aaaaaaaaaaaaaaa-----aaaaaaaagaa-aGGATAAAGATTAAT------TCTTGTACTTAAAAAAATATTTTCTTGAGTGTTACTCAGATGTGTTTTTACTTCCTGCCCTTCCAATAAAAATACGAGTGATGGTTCTGCCTCT
i manLeu1.NW_012104154v1    C 0 C 0
s colAng1.NW_012115910v1      6777044 860 -   6934359 TGTCCCTCGTCCTGCCCTTCTCCTGCTCCGCTTTCCTCCATGGAACTCCCTGCTGATGTGCCATGTACTCTAATGATTCATTTCGC--TTTTCCTCTGTCTGCCCAGATGGAAGGAATTTTGTGCTCAGCAAAAATATTTGTGGCTCACAAAGGGTGTTGCCATGTTCTAGCCTCCCTGCCCCATCGGGACTGTGTGTCTCCCTTTGCCCCTC---CCCT-----------GTCAGCTGTGGGTGCAGAAGGCCGTCCTTCGTGTGTTGACTCAGTTTGCCCTGGTGCTGGGCCCA-------------GAAAGCCCCAAGCCCAGAAGACATTTTCACTGCTAGTGTGGACTTGGTGGATGATATCAGCTACCAGAACCCTGCTGGATCATCTCCAAGAGCCA---GTCTCAGGGACGCTGAGGCCGACTGTGGAACAGCTGTCAACATGGTTTTGAAATGCTCAGCCATGTGAAGAGTGCTGGCAGCCCCTGCCTGCTGAGGCACATGCGGCTATGGTATTTCAATTCTATTACAGTAACATGACTTTGGTTGAGGATGGGACTAAAGAATAAAGATGcagcctgggcaatagagtgagcccccatttctacaaaaagtgaaaaatgtatccaggcaaggtgcatct-tagtcccagcaactctagagactgaggcaggaggatggcctgaacttgggaggtcaaggatgtaataagctgtcatcttgacactgcactccaacctgggtgacagagaaagg--ctgtctc-------------------------aaaaaaataaa-taaataaaGATTAATTAATCATC-TGGACAT-AAACAGTATTTTCTTGAATGTTACTCAAATGTG-TTTTACCTCCTGCCCTTCCAAGAAAAATACTGGTGATAGCTCTGCCTCT
i colAng1.NW_012115910v1    C 0 C 0
s calJac3.chrUn_GL286352         3755 854 -     21860 TGTCCCCCGTCCTGTCTTTCTCCTGCTCCGCTTTCCTCCGTAGAACTCCCTGCTGATGTGCCACGTGCTCTACTGATTTGTTTTGC--TTTTCCTGTGTCTGCCCAGCTGGAGGGAATTTTGTGCTCAGCAAAAGTGGGTGTGGCCTGCAAAGGGTGTGGCTGTGTTCCAGCTTCCCTGCCCTGTGGGGACAGCATGTCT----------------CCCGGG---------GTCAGCTGTGGGTGCAGAAGGTTGTCC----TGTGTCGGTTCAGTCCACCCTGGGGCTGGGCCCAAATTTGGAATAAGAAAAACCCCAAGCCCAGAAGTCATTTTCAGTGCCAGTGTGAACTTGCTGGACGAGCTCAGCTACTAGAACCCTGCTGGATCACCTCCAAGAGCCA---GTCTCAGGGACCCTGAGGTCACCTGTGGAACAGCTGTCAAGGTTGCTTTCACATACTCAGCCATACGAAGAACACTGGCAGCCCCTGCCTGCTGAGGCACACGCAGCTGTGGTGTTTCACTTCTATTACAGTAATATGACCTTGGTTGAGGATGGGATAAAAGAATAAAGATGcagcctgggaaacataatgag-ccccgtctctacaaaaaataaaaaatttagccagacatggtgcacctgtagtcccagtgactcgggagactgagt-gggagggtggcttgagtctgagaggtcaaggatgctgtgaggtgcaattgcgcccctgaactccaacctgggtgacagagtgagactctgtctc-------------------------aaaaaaaaaaa--------aGATTAATTCATCATCTTGGACAT-AAACAATATTTTCTTGAGTGTTACTCAGATGTGGTTTTACTTCCCGCCCTTCCAAGAAAAATACTGGTGATGGCGCTACCTCT
i calJac3.chrUn_GL286352    C 0 C 0
s saiBol1.JH378203            2609407 875 -   8192610 TGTCCCTCATTGTGTCTTTCTCCTGCTCCGCTTTCCTCCATGGAACTCCCTGCTGATGTGCCACGTGCTCTACTGATTCATTTTGC--TTTTCTTGTGTCTGCCCAGCTGGAGGGAATTTTGTCCTCAGCAAAAGTGTCTGTGGCCTGCAAAGGGTATGTCTGTGTTCCAGGTTCCCTGCCCCATGGGGACTGCGCGGCTCCCTTTGCCCCCCACCCCCGGG---------GTCGGCTGTGGGTGCAGAAGGCTGTCT---GTGTGTTTGCTCAGTCTGCCCTGGGGCTGGGCCCAAATTTGGAATAAGAAAAACCCCAAGCCGAGAAGTCATTTTCAGTGCCAGTGTGAACTTGCTGGACGAGCTCAGCTACCAGAACCCTGCTGGATCACCTCCAAGAGGGA---GG-TGGATCACCCTGAGGTCACCTGTGGAACAGCTTTCAAGGTGGCTTTGAAATGCTCAGCCATACGAAGAGCCCTGGCAGCCCCTGCCTATTGAGGCACACGAGGCTACGGTATTTCACTTCTATTACAGTAACATGACTTTGGTAGAGGATGGGATAAAAGAATAAAGATGcagcctgggcaacatagtgag-ccccgtctctacaaaaaataaaaaatgtagccaggcatggtgcacctgtagtcccagtgactcgggagactgagtggggaagatggcttgaatctcagaggtcaaggacacagtgagctgcgattgtgccactgcactccaacctgggtgacagagtgagactctgtctc----------------aaaa-----aaaaaaaaaaa--------aGATTAATTCATCATCGTGTATAT-AAACTATATTTTCTTGAGTGTTACTCAGCCGTGTTTTTACTTCCTGCCCTTCCAAGAAAAATGCTGATGATGGCGCCACCTCT
i saiBol1.JH378203          C 0 C 0
s cebCap1.NW_016107368v1      7143083 873 +   9895066 TGTTCCTCGTCCTGTCTTTCTCCTGCTCCGCTTTCCTCCATGGAACTCCCTGCTGATGTGCCACGTGTTCTACTGATTCGTTTTGC--TTTTCCTGTGTCTGCCCAGCTGGAGGGAATTTTGTGCTCAGCAGAAGTGTGTGTGGCCCGCAAAGGGTGTGGCTGTGCTCCAGCTTCCCTGCCCCATGGGGACTGTGCGGCTCCCTTTGCCCCTC---CCCAGG---------GTCGGCTGTGGGTGCAGAAGGCTGCCCTTCGTGTGTTGGCTCAGTCCGCCCTGGGGCTGGGCCAAAATTTGGAATAAGAAAAACCCCAAGCCCAGAAGTCATTTTCAGTGCCAGTGTGAACTTGCTGGACGAGCTCAGCTACCAGAACCCTGCTGGATCACCTCCAAGAGCCA---GTCTCAGGGACCCTGAGGTCACCTGTGGAATGGCTGTCAAGGTGGCTTTGAAATGCTCAGCCATACAAACAGCACTGGCAG-CCCTGCCTATTGAGGCACAGGAGGCTGTGGTATTTCACGTCTATTACAGTAACGTGACCTTGGTAGAGGATGGGATAAAAGAATAAAGATGcagcctgggcaacatagtgag-ccccggctctacaaaaaataaaaaatgtagccaggcatggtgcacctgtagtcccagtgactcgggagactgagtggggaagacggcttgggtctcagaggtcaaggatgcagtgagctgcgattgcgccactgcactccaacccgggtgacagagtgagactctgtctc------------------aa-----aaaaaaaaaaa--------aGATTAATTCATCATCGTGTATAT-TAACAATATTTTCTTTAGTGTTACTCAGACATGTTTTTACTTCCTGCCCTTCCAAGAAAAATACTGGGGATGGGGCTACCTCT
i cebCap1.NW_016107368v1    I 59 C 0
e nomLeu3.chr6               75903756   0 + 121039945 C

a score=285723.000000
s hg38.chr15_KI270851v1_alt     33680 71 +    263054 TTCAGCTTGGAGAAGACAGCCAGGCCAGTGAATATGGAACTGTTAGGCCTGAGCAGGCATAAAGGAAATCT
s gorGor5.CYUI01000350v1        36905 68 -    142253 TTCAGCTT---GAAGACAGCCAGGCCGGTGAATATGGAACTGTTAGGCCTGAGCAGGCATAAAGAAAATCT
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108352169 71 + 111343173 TTTAGCTTGGAGAAGACCACCATGCCCGTAAATACGGAACAGTTAGGTCTGAGCAGGAGTAAAGAAAATCT
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106263455 71 + 112612857 TTCAGCTTGGAGAAGACAACCATGCCCGTAAATACGGAACAGTTAGGTCTGAGCAGGCGTAAAGAAAATCT
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22643757 71 +  28977278 TTCAGCTTGGAGAAGACAACCATGCCCGTAAATACGGAACAGTTAGGTCTGAGCAGGCATAAAGAAAATCT
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1912906 71 +   8072957 TTCAGCTTGGAGAAGACAACCATGCCCGTAAATCTGGAACAGTTAGGTCTGAGCAGGCATAAAGAAAATCT
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102630885 69 + 108555830 TTCAGCTTGGAGAAG--AACCATGCCCGTAAATATGGAACAGTTAGGTCCGAGCAGGCATACAGAAAATCT
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2125850 71 +   2144893 TTCAGCTTGGAGAAGACAACCATGCCCGTAAATATGGAACAGTTAGGTCTGAGCAGGCATAGAGAAAATCT
i manLeu1.NW_012104154v1    C 0 C 0
s colAng1.NW_012115910v1      6777904 71 -   6934359 TTCAGCTTGGAGAAGACAGCCATGCTGGTGAACATGGAACAGTTAGGTCTGAGCAGGCATAAAGAAAATCT
i colAng1.NW_012115910v1    C 0 C 0
s saiBol1.JH378203            2610282 70 -   8192610 TTCAACTTGGAGAAGACAAACGCGCCCGT-GGTATGGAGCAGTCAGGTCTGAGCAGGCATggagaaaatct
i saiBol1.JH378203          C 0 I 1036
s cebCap1.NW_016107368v1      7143956 71 +   9895066 TTCAACTTGGAGAAGACAAGTGCGCCCGTGGGTATGGAGCAGTCAGGTCTGAGCAGGCATAGagaaaatct
i cebCap1.NW_016107368v1    C 0 I 1066
e nomLeu3.chr6               75903756  0 + 121039945 C
e calJac3.chrUn_GL286352         4609  0 -     21860 C

a score=530251.000000
s hg38.chr15_KI270851v1_alt     33751 178 +    263054 CCATTGTGCAGTGTTTTCAGCATAGTTAGTTTGGGATGAGTAAAGGTGTGTGGGGTAATTGCCATGCTTTTTGGCAATCGGGCATGCAAATGGGAAGGTCACAAATCACCCAGTCATACCACTTTGGACAAAGAAATCGGGAGTGTGCATTTCTTTTTCTTCTTATTTTTGCTTTGTT
s gorGor5.CYUI01000350v1        36973 178 -    142253 CCATTGTGCAGTGTTTTCAGCATAGTTAGTTTGGGATGAGTAAAGGTGTGTGGGGTAATTGCCATGCTTTTTGGCAATCAAGCATGCAAATGGGAAGGTCACAAATCACCCAGTCATACCACTTTGGACAAAGAAATCGGGAGTGTGCATTTCTTTTTCTTCTTCTTTTTGCTTTGTT
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108352240 178 + 111343173 CCATTGTGTGGTGTTTTCAGCACAGTTAGTTTGGAATGAGTAAACGTGTGTGAGGTAATTGCCATGCTTTGTGGCAATCAGACCTACAAAGGGGAAGGTCACAAATCACCCAGTAATACCACTTTGCACAAAGAAATTGGGAGTGTACATTTCTTTTTCTTCTTCTTTTTGCTTTGTT
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106263526 178 + 112612857 CCATTGTGTGCTGTTTTCAGCACAGTTAGTTTGGAATGAGTAAACGTGTGTGAGGTAATTGCCATGCTTTGTGGCAATCAGACCTACAAAGGGGAAGGTCACAAATCACCCAGTAATACCACTTTGCACAAAGAAATTGGGAGTGTACATTTCTTTTTCTTCTTCTTTTTGCTTTGTT
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22643828 178 +  28977278 CCATTGTGTGCTGTTTTCAGCACAGTTAGTTTGGAATGAGTAAACGTGTGTGAGGTAATTGCCATGCTTTGTGGCAATCAGACCTACAAAGGGGAAGGTCACAAATCACCCAGTAATACCACTTTGCACAAAGAAATTGGGAGTGTACATTTCTTTTTCTTCTTCTTTTTGCTTTGTT
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1912977 178 +   8072957 CCATTGTGTGGCGTTCTCAGCACAGTTAGTCTGGAATGAGTAAAGCTGTGTGAGGTAATTGCCATGCTTTGTGGCAATCAGACCTACAAAGGGGAAGGTCACAAATCACCCAGTAATACCACTTTGCACAAAGAAATGGGGAGTGTACATTTCTTTTTCTTCTTCTTTTTGCTTTGTT
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102630954 178 + 108555830 CCATTGTGTGCTGTTTTCAGCACAGTTAGTCTGGAATGAGTAAAGGTGTGTGAGGTAATTGCCATGCTTTGTGGCAATCAGACCTACAAAGGGGAAGGTCACAAATCATCCAGTAATACCACTTTGGACAAAGAAATTGGGAGTGTACATTTCTTTTTCTTCTTCTTTTTGCTTTGTT
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2125921 178 +   2144893 CCATTGTGTGGCGTTCTCAGCACAGTTAGTTTGGAATGAGTAAAGGTGTGTGAGGTAATTGCCATGCTTTGTGGCAATCAGACCTACAAAGGGGAAGGTCACAAATCACCCAGTAATACCACCTTGCACAAAGAAATTGGGAGTGTACATTTCTTTTTCTTCTTCTTTTTGCTTTGTT
i manLeu1.NW_012104154v1    C 0 C 0
s colAng1.NW_012115910v1      6777975 176 -   6934359 CTATTGTGCGGTGTTTTCAGCACAGTTAGTTTGCAATGAGTAAAGGTGTGTGGAGTAATTGCCATGCTTTGTGGCAATCAGGCATAAAAATGGGAAGGTCACAAATCATCCAGTCATACCACTTTGGACAAATAAATTGGGAGTGTGCAtttcttttttttttcttttt--ctttgtt
i colAng1.NW_012115910v1    C 0 I 317
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e nomLeu3.chr6               75903756   0 + 121039945 C
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609   0 -     21860 C

a score=779017.000000
s hg38.chr15_KI270851v1_alt     33929 260 +    263054 AGAAGTGAGTGTTCACTTTATCTCTGAAGGCATGTGATTGTTATGAAGTCAGCAGTGATGATAGCTCTTTACCCCAAACTGCCAaggccagggattacatcaatcatctatatcctgaacatggtgcctagcattcggctggagctcagcgagtatttgttgaatgaatgaatCAATCCCATTTCGCCTTCTTGCCAGCTCTGGTCTGGGTGGTCGGTACTTTCCTTTTTGAGTACTGCACGGACCCAGGTTTCTGGAGT
s gorGor5.CYUI01000350v1        37151 260 -    142253 AGAAGTGAGTGTTCACTTTATCTCTGAAGGCATGTGATTGTTATGAAGTCAGCAGTGATGATAGCTCTTTACCCCAAACTGCCgaggccagggattacctcagtcatctatatcctgaacatggtgcctagcattcggctggagctcagcgagtatttgttgaatgagtgaatCAATCCCATTTCGCCTTCTTGCCAGCTCTGGTCTGGGTGGTGGGTACTTTCCTTTTTGAGTACTGCACGGACCCAGGTTTCTGGAGT
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108352418 259 + 111343173 AGAAGTGGGTGTTCACTTTATCTCTGATGGCATGTGATTGTCATGAAGTCAGTCGTGATGATAGCTCTCAACTCCAAACTGCtgagaccagggactacctcagccatctatatcctgcacacggtgcctagcact-ggctggagctcagcgagtatttgttgagtgagtgaatCAATCCTATTTCGCCTTCTTGCCAGTTCTGGTCTGGGTGGTCGGTACTTTCCTTCCTGAGTATCGTGCAGACCCAGGTTTCTGGCGT
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106263704 259 + 112612857 AGAAGTGGGTGTTCACTTTATCTCTGATGGCATGTGATTGTCATGAAGTCAGTCGTGATGATAGCTctcaactccaaactgctgagaccagggactacctcagccatctatatcctgcacacggtgcctagcact-ggctggagctcagcgagtatttgttgagtgagtgaatCAATCCTATTTCGCCTTCTTGCCAGTTCTGGTCTGGGTGGTCGGTACTTTCCTTCCTGAGTATCGTGCAGACCCAGGTTTCTGGCGT
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22644006 259 +  28977278 AGAAGTGGGTGTTCACTTTATCTCTGATGGCATGTGATTGTCATGAAGTCAGTCGTGATGATAGCTCTCAACTCCAAACTGCtgagaccagggattacctcagccatctatatcctgcacacggtgcctagcact-ggctggagctcagcgagtatttgttgagtgagtgaatCAATCCTATTTCGCCTTCTTGCCAGTTCTGGTCTGGGTGGTCGGTACTTTCCTTCCTGAGTATCGTGCAGACCCAGGTTTCTGGCGT
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1913155 259 +   8072957 AGAAGTGGGTGTTCACTTTATCTCTGATGGCATGTGATTGTCATGAAGTCAGTCGTGATGATAGCTCTCAACTCCAAACTGCtgagaccagggattacctcagccatctatatcctgcacacggtgcctagcatt-ggctggagctcagcgagtatttgttgagtgagtgaatCAATCCTATTTCGCCTTCTTGCCAGTTCTGGTCTGGGTGGTCGGTACTTTCCTTCCTGAGTATCGTGCAGACCCAGGTTTCTGGCGT
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102631132 259 + 108555830 AGAAGTGGGTGTTCACTTTATCTCTGATGGCATGTGATTGTCATGAAGTCAGTCGTGATGATAGCGCTCAATTCCAAACTGCTGAGACCAGGGATTACCTCAGTCATCTATATCCTGCACACGGTGCCGAGTATT-GGCTGGAGCTCAGCGAGGATTTGTTGAGTGAGTGAATCAATCCTATTTCGCCTTCTTGCCAGTTCTGGTCTGGGTGGTCTGTATTTTCCTTCCTGAGTATTGCGGAGACCCAGGTTTCTGGAGT
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2126099 259 +   2144893 AGAAGTGGGTGTTCACTTCATCTCTGATGACATGTGATTGTCATGAAGTCAGTCGTGATGATAGCTCTCAACTCCAAACTGCtgagaccagggattacctcagccatctatatcctgcacacggtgcctagcatt-ggctggagctcagcgagtatttgttgagtgagtgaatCAATCCTATTTCGCCTTCTTGCCAGTTCTGGTCTGGGTGGTCAGTACTTTCCTTCCTGAGTATCGTGCAGACCCAGGTTTCTGGCGT
i manLeu1.NW_012104154v1    C 0 C 0
s colAng1.NW_012115910v1      6778468 259 -   6934359 agaaGTGAGTGTTCGCTTTATTGCTGATGGCATGTGATTGTTATGAAGTCAGCATCGATGATAGCTCTCGACCCCAAATTGCtgaggccagggattacctcagtcatctatatcctgaacatggtgcctagcattcagctggagctcagcgagtatttgttgaatgagtgaatCAATGCCATTTTGCTTTCTTGCCAGCTCTGGTCTGGGTGGTCAGTACTTTCCTTTCTGAGTACTGCACAGACCC-GGTTTCTGGAGT
i colAng1.NW_012115910v1    I 317 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e nomLeu3.chr6               75903756   0 + 121039945 C
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609   0 -     21860 C

a score=1134480.000000
s hg38.chr15_KI270851v1_alt     34189 303 +    263054 CTGGACTCAACGGCTTATGTGGGAGCAGCCTCTTCCATTCTGCAGTGGGGATTACTATCCAGAGCCAGGTACAGGCCCCAGAGGAGGGTGCACTGGGGCCACAGGCCCAAGGCCATCCAGTTCCCTTTGCCCAGCTGGGGTCTTGTGGAAGAAGAAAGCCAGTGTCCTGAAATTATTCCTTCCTCACTGCCATCTATACTGGAAATAATCCCAAGGGATTTAGAATAAGCAAAATCAAAttctgtcatttctaaattttctaagatgaacacgtatagcttttatacacagaaaaaCCATATT
s gorGor5.CYUI01000350v1        37411 303 -    142253 CTGGACTCAATGGCTTATGTGGGAGCAGCCTCTTCCGTTCTGCAGTGGGAATTACTATCCAGAGCCAGGTACAGGCCCCAGAGGAGGGTGCACTGGGGCCACATGCCCGAGCCCCTCCAGTTCCCTTTGCCCAGCTGGGGTCTTGTGGAAGAAGAAAGTCAGTGTCCTGAAATTATTCCTTCCTCACTGCCAGCTATACTGGAAATAATCCCAAGGGATTTAGAATAAGCAAAATCAAAttctgtcatttctaaattttctaagatgaacacgtatagcttttctacacagaaaaaCCATATT
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75903756 303 + 121039945 CTGGACTCAGTGGCTGATGTGGGAGCAGCCTCTTCCGTTCTGCAGTAGGAATTACTATCCAGAGCCAGGTACAGGCCCCGGAGGAGGGTGCCGTGGGGCCACAGGCCTGAGGCCCTCCAGTTCCCTCTGCCCAGCTGGGGTCTTGTGGAAGAGGAAAGCCAGTGTCCTGAAATTATTCCTTCCTCACTGCCATCAATACCGGAAATACTCCCAAGGGATTTAGAATAAGCAAAATCAAAttctgtcatttctaaattttctaagacgaacatgtatagcttttatacacagaaaaaCCATATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr15             108352677 295 + 111343173 CTGGGCTCATTGGCTGATGTGGGAGCAGCCTCTTCCTTTCTGCAGTGGGAATCACTATCCAGAGCCAGGTACAGGCCCCGGAGGAGGGTCCTATGGGGCCACAGGTCCAAGGCCCTCCAGTTCCCTTTGCCTGGCTGGGGTTTTGTGGAAGAGGAAAGCCAGTGTCCTGAAATGATTCCTTCCTCACTGCCATCAATACCGGAAATACTCCCAAGGGATTTAGAATCAGAAAAATCA--------CAtttctaaattttctaagatgaacatgtatagcttttatacacagaaaaaCCATAGT
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106263963 295 + 112612857 CTGGGCTCATTGGCTGATGTGGGAGCAGCCTCTTCCTTTCTGTAGTGGGAATTACTATCCAGAGCCAGGTACAGGCCCCGGAGGAGGGTCCTATGGGGCCACAGGTCCAAGGCCCTCCAGTTCCCTTTGCCTGGCTGGGGTTTTGTGGAAGAGGAAAGCCAGTGTCCTGAAATGATTCCTTCCTCACTGCCATCAATACCGGAAATACTCCCAAGGGATTTAGAATCAGAAAAATCA--------CAtttctaaattttctaagatgaacatgtatagcttttatacacagaaaaaCCATAGT
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22644265 295 +  28977278 CTGGGCTCATTGGCGGATGTGGGAGCAGCCTCTTCCTTTCTGCAGTGGGAATTACTATCCAGAGCCAGGTACAGGCCCCGGAGGAGGGTCCTATGGGGCCACAGGTCCAAGGCCCTCCAGTTCCCTTTGCCTGGCTGGGGTTTTGTGGAAGAGGAAAGCCAGTGTCCTGAAATGATTCCTTCCTCACTGCCATCAATAACGGAAATACTCCCAAGGGATTTAGAATCAGAAAAATCA--------CAtttctaaattttctaagatgaacatgtatagcttttatacacagaaaaaCCATAGT
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1913414 295 +   8072957 CTGGGCTCATTGGCTGATGTGGGAGCAGCCTCTTCCTTTCTGCAGTGGGAATTACTATCCAGAGCCAGGTACAGGCTCCAGAGGAGGGTCCTATGGGGCCACAGGTCCAAGGCCCTCCAGTTCCCTTTGCCTGGCTGGGGTTTTGTGGAAGAGGAAAGCCAGTGTCCTGAAATGATTCCTTCCTCACTGCCATCAATACCGGAAATACTCCCAAGGGATTTAGAATCAGAAAAATCA--------CAtttctaaattttctaagatgaacatgtatagcttttatacacagaaaaaCCATAGT
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102631391 303 + 108555830 CTGGGCTCATTGGCTGATGTGGGAGCAGCCTCTTCCTTTCTGCAGTGGGAATTACTATCCAGAGCCAGGTACAGGCCCCGGAGGAGGGTCCTGTGGGGCCACAGGTCCAAGGCCCTCCAGTTCCCTTTGCCTGGCTGGGGTCTTGTGGAAGAGGAAAGTCAGTGTCCTGAAATGATTCCTTCCTCACTGCCATCAATACCGGAAATACTCCCAAGGGATTTGGAATAAGAAAAATCAAAttctgtcatttctaaattttctaagatgaacatgtatagcttttatacacagaaaaaCCATAGT
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2126358 295 +   2144893 CTGGGCTCATTGGCTGATGTGGGAGCAGCCTCTTCCTTTCTGCAGTGGGAATTACTATCCAGAGCCAGGTACAGGCCCCGGAGGAGGGTCCTATGGGGCCACAGGTCCAAGGCCCTCCAGTTCCCTTTGCCTGGCTGGGGTTTTGTGGAAGAGGAAAGCCAGTGTCCTGAAATGATTCCTTCCTCACTGCCATCAATACCGGAAATACTCCCAAGGGATTTCGAATCAGAAAAATCA--------CAtttctaaattttctaagatgaacatgtatagcttttatacacagaaaaaCCATAGT
i manLeu1.NW_012104154v1    C 0 C 0
s colAng1.NW_012115910v1      6778727 303 -   6934359 CTGGGCTCATTGGCTGATGTGGGAGCAGCCTCTTCCTTTCTGCAGTGGGAATTACTATCCAGAGCCAGGTACAGGCCTGGGAGGAGGGTGCTGTGGAGACACAGGTCCGAGGCCCTCCAGTTCCCTTTGCCTGGCTGGGGTCTTATGGAAGAGGAAAACCAGTGTCCTGAAATTATTCCTTCCTCACTGCCATCAAAACCGGAAATACTCCCAAGGGATTTGGAATAAGCAAAATCAAAttctgtcatttctgaattttctaagatgagcatgtatagcttttatacacagaaaaaCCATATT
i colAng1.NW_012115910v1    C 0 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609   0 -     21860 C

a score=4202.000000
s hg38.chr15_KI270851v1_alt     34492 2 +    263054 AA
s gorGor5.CYUI01000350v1        37714 2 -    142253 Aa
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75904059 2 + 121039945 AA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr15             108352972 2 + 111343173 AG
i rheMac8.chr15             C 0 C 0
s macNem1.NW_012012133v1     22644560 2 +  28977278 AG
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1913709 2 +   8072957 AG
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102631694 2 + 108555830 AG
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2126653 2 +   2144893 AG
i manLeu1.NW_012104154v1    C 0 C 0
s colAng1.NW_012115910v1      6779030 2 -   6934359 AA
i colAng1.NW_012115910v1    C 0 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609 0 -     21860 C
e macFas5.chr15             106264258 0 + 112612857 C

a score=6726.000000
s hg38.chr15_KI270851v1_alt     34494 13 +    263054 AACACAAACACAC
s gorGor5.CYUI01000350v1        37716 13 -    142253 aacacaaacacac
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75904061 13 + 121039945 AACACAAACACAC
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012115910v1      6779032 13 -   6934359 TACACAAACACAC
i colAng1.NW_012115910v1    C 0 I 8
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e manLeu1.NW_012104154v1      2126655  0 +   2144893 C
e cerAty1.NW_012000030v1      1913711  0 +   8072957 C
e macNem1.NW_012012133v1     22644562  0 +  28977278 C
e rheMac8.chr15             108352974  0 + 111343173 C
e chlSab2.chr12             102631696  0 + 108555830 C
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609  0 -     21860 C
e macFas5.chr15             106264258  0 + 112612857 C

a score=73176.000000
s hg38.chr15_KI270851v1_alt     34507 306 +    263054 ggccgggcgtggtggctgatgcctgtaatcccagcactttgggaggccgaggcgggtggatcaggaggtcaggagatcgagaccatcctggctaacacggtaaaaccccgtttctactaaaaaata-caaaaaagttagccgggtgttgtggcgggcgcctgtagtcccagctactcgagaggctgaggcaggagaatggcgtgaacccaggaggcagagcttgcagtgagccgagatggcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaacaaaaacaaaaacaaaaac
s gorGor5.CYUI01000350v1        37729 305 -    142253 ggccgggcgtggtggctgatgcctgtaatcccagcactttgggaggccaaggcgggtggatcaggaggtcaggagatcgagaccatcctggctaacacggtaaaaccccgtttctactaaaaaata-caaaaaaattagccgggtgtggtggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggaggcagagcttgcagtgagccgagatggctccactgcactccagcctgggcgacagagcgagactccatctcaaaa-aaaaacaaaaacaaaaaa
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75904074 296 + 121039945 ggccaggcgtggtggctgatgcctgtaagcccagtactttgggaggccgaggcgggtggatcacgaggtcaagagatcgagaccatcctggct----cggtaaaaccccgtttttattaaaaaatattttaaaaattagccgggcgtggtggcgggcgcctgtagtcccagttactgga------gaggcaggagaatggcgtgaacccaggaggcagagcttgcagtgagccgagatcgcgccactgcattccagcctgggcaacagagcgagactctgtctcaaaa-aaaaaaaaaaaaaaaaaa
i nomLeu3.chr6              C 0 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e colAng1.NW_012115910v1      6779045   8 -   6934359 I
e manLeu1.NW_012104154v1      2126655   0 +   2144893 C
e cerAty1.NW_012000030v1      1913711   0 +   8072957 C
e macNem1.NW_012012133v1     22644562   0 +  28977278 C
e rheMac8.chr15             108352974   0 + 111343173 C
e chlSab2.chr12             102631696   0 + 108555830 C
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609   0 -     21860 C
e macFas5.chr15             106264258   0 + 112612857 C

a score=726.000000
s hg38.chr15_KI270851v1_alt     34813 2 +    263054 aa
s gorGor5.CYUI01000350v1        38034 2 -    142253 aa
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75904370 2 + 121039945 aa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr15             106264258 2 + 112612857 AG
i macFas5.chr15             C 0 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e colAng1.NW_012115910v1      6779045 8 -   6934359 I
e manLeu1.NW_012104154v1      2126655 0 +   2144893 C
e cerAty1.NW_012000030v1      1913711 0 +   8072957 C
e macNem1.NW_012012133v1     22644562 0 +  28977278 C
e rheMac8.chr15             108352974 0 + 111343173 C
e chlSab2.chr12             102631696 0 + 108555830 C
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609 0 -     21860 C

a score=62250.000000
s hg38.chr15_KI270851v1_alt     34815 24 +    263054 aa--------------cacaaacaCACATACAACCTCG-
s gorGor5.CYUI01000350v1        38036 24 -    142253 aa--------------cacaaacacatatacaaCCTCG-
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75904372 38 + 121039945 aaaaaCCAGAAAAAATCACAAACACACATACAGCCTCC-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr15             108352974 25 + 111343173 AA--------------CACAAACACACATACAACCTCCC
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106264260 25 + 112612857 AA--------------CACAAACACACATACAACCTCCC
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22644562 25 +  28977278 AA--------------CACAAACACACATACAACCTCCC
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1913711 25 +   8072957 AA--------------CACAAACACACATACAACCTCCC
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102631696 25 + 108555830 AA--------------CACAAACACACATACCACCTCCC
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2126655 25 +   2144893 AA--------------CACAAACACACATACAACCTCCC
i manLeu1.NW_012104154v1    C 0 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e colAng1.NW_012115910v1      6779045  8 -   6934359 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609  0 -     21860 C

a score=2564980.000000
s hg38.chr15_KI270851v1_alt     34839 726 +    263054 CTGGGTCTTGAGAAAGCTTGTCACTGGGGAGGTTAATGGAAATTGTACACTTTTCTCTGTTAGCTAGTTAAAAGTCTTTAAAAATCCTGCCTCAATTTAACCTTGGGAAATGGAACTTTATAGGTGGTTCAGGAATGTGAAGATTCACACATCACAAAATATTTAAATGTATTTGACGTGTGATAAACATGTAAATATCATAGTGCTGTGACTTTGCTTATGAGTTATATATTTCTAATCATTTTAAT-GTTATCACGATTTTTTAAAAAGTTCTTTTATATGATAGTTATTATTTGGGGTTACTGTGTAAGAAAGCCATTTAGCCACCAGAGGGCGATGTGACACAGCAGAAAGTAGGTCTCTGTTCGGCTGAAACCTTTACTTTTCAAAACGGGAA-AT-Caccagcctggccaacatggtgaaac-----------------------------------------ctaaaaa-------------aaatacaaacattagccgggcgcggtggcggacacctgtaatcccagctactcaggaggctgaggcaagagaatcgcttgaactggggaggcgaaggttgcagtgagccgagattgtgccactgcactccagcctgggcgaca--gagcgagacttcgtctcaaaacaaaccaaaaccaaaccaaaacaaaacaaaataaaacacaacaaaacGAGAACTCAAAATGGAATTCTAAGGAAGTGGTCACTTTTATATATGTCCATGTTAAAGTTCTAGAGCTGTTGATAAATATAAA
s gorGor5.CYUI01000350v1        38060 736 -    142253 CTGGGTCTTGAGAAAGCTTGTCACTGGGGAGGTTAATGGAAATTGCACACTTTTCTCTGTTAGCTAGTTAAAAGTCTTTAAAAATCCTGTCTC-----AACCTTGGGAAATGGAACTTTATAGGTGGTTCAGGAATGTGAAGAGTCACACATCACAAAATATTTAAATGTATTTGACGTGTGATAAACATGTAAATATCATAGTGTTGTGACTTTGCTTATGAGTTATATATTTCTAATCATTTTAAT-GTTATCACGATTTTTTAAAAAGTTCTTTTATATGATAGTTATTATTTGGGGTTACTGTGTAAGAAAGCCATTTAGCCACCAGAGGGCGATGTGACACAGCAGAAAGTAGGTCTCTGTTCGGCTGAAACCTTTACTTTTCAAAACGGGAA-AT-Caccagcatggccaacatggtgaaacct-------------------aaaaaa-aatact----aaactaaaaa-------------aaatacaaaaattagcc-ggcgcggtggcggacgcctgtaatcccagctactcaggaggctgaggcaagagaatcgcttgaact-gggaggcgaaggttgcagtgagccgagattgtaccactgcactccagcctgggcgaca--gagcgagactccgtctcaaaacaaaccaaaaccaaaccaaaacaaaacaaaataaaacacaacaaaaTGAGAACTCAAAATGGAATTCTAAGGAAGTGGTCACTTTTATATATGTCCATGTTAAAGTTCTAGAGCTGTTGATAAATATAAA
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75904410 741 + 121039945 CTGGGTCTTGAGAAAGCTTGTCACTGGGGAGGTTAATGGAAATTGCACACTTTTCTCTGTCAGCTAGTTAAAAGTGTTTAAACACCCTGTCTCAATTTAACCTTGGGAAATGGAACTTTATAGATGGTTCAGGAATGTGAAGATTCACACATCACAAAATATTTAAATGTATTTGACGTGTGATAAACATGTAAATATGATAGTATTGTGACCTTGCTTATGAGTTATATATTTCTAATCGTTTTAATGGTTATCACGATTTTTAAAAAAGATCTTTAATGTAGTAGTTATTATTTGGGGTTACTGTGTAAGAAAGCTATTCAGCCACCAGAGGGCGATGTGACACAGCACAAAGTAGGTCTCTGTTGGGCTGAAACCTTTACTTTCCAAAATGGGAA-AT-Caccagcctggccaacatggtgaaacct-------------------aaaaaataatacc----aaactaaaaa-------------aaatacataaattagccgggcgcggtggcgggcgcctgtaattccagctactcaggaggctgaggcaagagaatcgcttgaactggggaggcgaaggttgcagtgagcagagattgcgccactgcactccagcctgggcgtca--gagcgagactccgtctcaaaacaaaccaaaacaaaaccaaaacaaaacaaaataaaacacaacaaaaTGAGAACTCAAAATGGAATTCT----AACTGGTCACTTTTATACATGTCCATGTTAAAGTTCTAGAGCTTTTGATAAATATAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr15             108352999 767 + 111343173 CTGAGTCTTGGGAAAGCTTGTCACTGGGGAGGTTAGCGGAAATTGCACACTTTTCTCTGCTAGCTGGTTAAAAGTCTTCAAAAACCCTGTCTGAATTTAATCTTAGGAAATGGAACTTCATAGATGGTTCAGGAATGTAAAGATTCACACATCACAAAATATTTCAATGCATTTGATGCCTGATAAACATGTAAATATCAGAGTGTTGTGTCTTTGCTTATGAGTTGTATATTTCTATTCGTTTTAATGGTTATCACGATTTTTTCAAAAGATCTTTAATGTAACAGTGATTATTTTGGGTTACTGTGTAAGAAAGCTATTTAGCCACTAGAGGGCAATGTGACACAGCACAAAGTAGGTCTTGGTTCAGCTGAAACCTTTACTTTTCAAAATGGGAACATacaccagcctggccaacatggtgaaacccagtctctaccaaaaaaaaaaaaaaaaaaaaaa----aaattaaaaataaataaataaataaatacaaaaatttgccgggcgtggtggcggtcgcctgtaatcccagctactcaggaggctgaggcaggacaatcgcttgaaccggggaggcagaggttgcagtaagctgagatcgtgccactgcactccagcctgggcaaca--gagcgagactctgtctcgaaacaaa--------aaacaaaaaca----gaaacaaaaCACAACAAAATGAGAAATCAAAATGGAATTTTAAGGAAGCAGGCACTTTTATATATGTCCATGTTAAAGTTCTAGAGCTGTTGATAAATATAAA
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106264285 767 + 112612857 CTGAGTCTTGGGAAAGCTTGTCACTGGGGAGGTTAGCGGAAATTGCACACTTTTCTCTGCTAGCTGGTTAAAAGTCTTCAAAAACCCTGTCTGAATTTAATCTTAGGAAATGGAACTTCATAGATGGTTCAGGAATGTAAAGATTCACACATCACAAAATATTTCAATGTATTTGATGCCTGATAAACATGTAAATATCAGAGTGTTGTGTCTTTGCTTATGAGTTGTATATTTCTATTCGTTTTAATGGTTATCACGATTTTTTCAAAAGATCTTTAATGTAACAGTGATTATTTTGGGTTACTGTGTAAGAAAGCTATTTAGCCACTAGAGGGCAATGTGACACAGCACAAAGTAGGTCTTGGTTCAGCTGAAACCTTTACTTTTCAAAATGGGAACATACaccagcctggccaacatggtgaaacccagtctctaccaaaaaaaaaaaaaaaaaaaaaa----aaattaaaaataaataaataaataaatacaaaaatttgccgggcgtggtggcggtcgcctgtaatcccagctactcaggaggctgaggcaggacaatcgcttgaaccggggaggcagaggttgcagtgagctgagatcatgccactgcactccagcctgggcgaca--gagcgagactctgtctcgaaacaaa--------aaacaaaaaca----gaaacaaaaCACAACAAAATGAGAAATCAAAATGGAATTTTAAGGAAGCAGGCACTTTTACATATGTCCATGTTAAAGTTCTAGAGCTGTTGATAAATATAAA
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22644587 758 +  28977278 CTGAGTCTTGGGGAAGCTTGTCACTGGGGAGGTTAGCGGAAATTGCACACTTTTCTCTGCTAGCTGGTTAAAAGTCTTCAAAAACCCTGTCTGAATTTAATCTTAGGAAATGGAACTTCATAGATGGTTCAGGAATGTAAAGATTCACACATCACAAAATATTTCAATGTATTTGATGCCTGATAAACATGTAAATATCAGAGTGTTGTGTCTTTGCTTATGAGTTGTATATTTCTATTCGTTTTAATGGTTATCACGATTTTTTCAAAAGATCTTTAATGTAACAGTGATTATTTTGGGTTACTGTGTAAGAAAGCTATTTAGCCACTAGAGGGCAATGTGACACAGCACAAAGTAGGTCTTGGTTCAGCTGAAACCTTTACTTTTCAAAATGGGAACATACaccagcctggccaacatggtgaaacccagtctctacc---------aaaaaaaaaaaaa----aaattaaaaataaataaataaataaatacaaaaatttgccgggcgtggtggcggtcgcctgtaatcccagctactcaggaggctgaggcaggacaatcgcttgaacgggggaggcagaggttgcagtgagctgagatcgtgccactgcactccagcctgggcgaca--gagcgagactctgtctcgaaacaaa--------aaacaaaaaca----gaaacaaaaCACAACAAAATGAGAAATGAAAATGGAATTTTAAGGAAGCAGGCACTTTTATATATGTCCATGTTAAAGTTCTAGAGCTGTTGATAAATATAAA
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1913736 756 +   8072957 CTGAGTCTTGGGAAAGCTTGTCACTGGGGAGGTTAGCGGAAATTGCACACTTTTCTCTGCTAGCTGGTTAAAAGTCTTCAAAAACCCTGTCTGAATTTAATCTTAGGAGATGGAACTTCATAGATGGTTCAGGAATGTAAAGATTCACACATCACAAAATATTTCAATGTATTTGATGCCTGATAAACATGTAAATATCATAGTGTTGTGTCTTTGCTTATGAGTTGTATATTTCTATTCGTTTTAATGGTTATCACGATTTTTTCAAAAGATCTTTAATGTAACAGTGATTATTTTGGGTTACTGTGTAAGAAAGCTATTTAGCCACTAGAGGGCAATGTGACACAGCACAAAGTAGGTCTTGGTTCAGCTGAAACCTTTACTTTTCAAAATGGGAACATACaccagcctggccaacatggtgaaacccagtctctacc-------------aaaaaaaaa----aaattaaaaacaaataaataaataaatacaaaaatttgccgggcgcggtggcggtcgcctgtaatcccagctactcaggaggctgaggcaggacaatcgcttgaaccggggaggcagaggttgcagtgagctgagatcgtgccactgcactccagcttgggtgacaaggtgcaagactctgtctcgaaacaaa--------aaacaaaaaca----gaaacaaaaCACAACAAAATGAGAAATCAAAATGGAATTTTAAGGAAGCAGGCACTTTTATATATGTCCATGTTAAAGTTCTAGAGCTGTTGATAAATATAAA
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102631721 723 + 108555830 CTGAGTCTTGGGAAAGCTTGTCCCTGGGGAGGTTAGTGGAAATTGCACACTTTTCTCTGCTAGCTGGTTAAAAGTCTTCAAAAACCCTGTCTGAATTTAACCTTAGGAAATGGAACTTCATAGATGGTTCAGG-----AAAGATTCACACATCACAAAATATTTCAATGTATTTGATGTCTGATAAACATGTAAATATCATAGTGTTGTGTCTTTGCTTATGAGTTATATATTTCTAATCGTTTTAATGGTTATCACGATTTTTTCAAAAGATCTTTAATGTAACAGTGATTATTTTGGGTTACTGTGTGAGAAAGCTATTTAGCCACCAGAGGGCGATGTGACACAGCACAAAGTAGGTCTCGGTTCAGCTGAAACCTTTACTTTTCAAAATGGGAACAT-Caccaacctggccaacatggtgaaaccccgtctctacc---------aaaaaaaaaaaaa---------------------------------aaaaattagccggacgcggtggtggtcgcctgtaatcccagctactcaggaggctgaggcaggacaatcccttgaaccggggaggcagaggtttcagtgagccgggatcgtgcctctgcactccagcctgggcgaca--gagagagactccatctcgaaacaaa--------aaacaaaaaca----gaaacaaaaCACAACAAAATGAGAAATCAAAATGGAATTTTAAGGAAGCGGGCACTTTTATATATGTCCATGTTAAAGTTCTAGAGCTGTTGATAAATATAAA
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2126680 762 +   2144893 CTGAGTCTTGGGAAAGCTTGTCACTGGGGAGGTTAGCGGAAATTGCACACTTTTCTCTGCTAGCTGGTTAAAAGTCTTCAAAAACCCTGTCTGAATTTAATCTTAGGAAATGGAACTTCATAGATGGTTCAGGAATGTAAAGATTCACACATCACAAAATATTTCAATGTATTTGATGCCTGATAAACATGTAAATATCATGGTGTTGTGTCTTTGCTTATGAGTTGTATATTTCTATTCGTTTTAATGGTTATCACGATTTTTTCAAAAGATCTTTAATGTAACAGTGATTATTTTGGGTTACCGTGTAAGAAAGCTATTTAGCCACTAGAGGGCAATGTGACACAGCACAAAGTAGGTCTTGGTTCAGCCGAAACCTTTACTTTTCAAAATGGGAACATACaccagcctggccaacatggtgaaacccagtctctacc---------aaaaaaaaaataataataaattaaaaataaataaataaataaatacaaaaatttgccgggcgcggtggcggtcgcctgtaatcccagctactcaggaggctgaggcaggacaatcgcttgaaccggggaggcagaggttgcagtgagctgagatcgtgccactgcactccagcctgggtgaca--gagcgagactctgtctcgaaacaaa--------aaacaaaaaca----gaaacaaaaCACAACAAAATGAGAAATCAAAATGGAATTTTAAGGAAGCAGGCACTTTTATATATGTCCATGTTAAAGTTCTAGAGCTGTTGATAAATATAAA
i manLeu1.NW_012104154v1    C 0 C 0
s colAng1.NW_012115910v1      6779053 740 -   6934359 CTGGGTCTTGAGAAAGCTTTTCTCTGGGGAAGTTAATGGAAATTGCATCCTTTTCTCTGTTAGCTAGTTAAAAGTCTTTAAAAACCCTGTCTGAATTTAATCTTAGAAAAGGGAATTTTATAAATGGTTTAGAAATGTAAAGATTCACACATCACAAAATATTTAAATGCATTTGATGTTTGATAAACATGTAAATATCATAGTGCTGTGAATTTGCTTATGAGTTATATATTTCTAGTCGTTTTAATGGTTATCACGA-TTTTTAAAAATATCTTTAATATAGTAGTTATTATTTGGGGTTACTGTGTAAGAAAGCTACTTAGCCACCAGAGGGCGCCGTGACACAGCACAAAGTAGGTCTCCCTTCCACTGAAACCTTTGCTTTTCAAAACGGGGA-AT-Caccagcctggccaacatggtgaaaacccgtctctact---------caaaaaaaaaaaa-----------------agaaaaaaagaaaaaaaaaatttagccgggcgcggtggcgggggcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacggggaaggtggaggatacagtgagccgagatcgcatcactgcactccagccttggcaaca--gagcgagactccgtctcaaaacaaa--------caacaaaa--c----aaaacaaaTCACAACTAAATGAGAAATCAAAATGGAATTCTAAGTAAGTGGGCACTTTTATATATGTCCATGTGAAAGCTCTAGAGCTGTTGATAAATATAAA
i colAng1.NW_012115910v1    I 8 I 657
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609   0 -     21860 C

a score=9267473.000000
s hg38.chr15_KI270851v1_alt     35565 3131 +    263054 AACAATAATGGTAAGTTATTCCAGTAGGAGATGTTCATTATTTTCTTTATTAATGCTTAATGTTTTTCAGTTCATATTTCAAATATATGTATTCTATATGAAATTTTCATAAAATGGAGAATGGCATGCTATCTAAAATGTAAAAAACACATATACATGTATATATACCCAGATATATAGATTTTGCTGTTGCAATTATAGAAGAAAACAATGACCTCTGTGCCATTAAAAAAGCGTTTGATTTTTCCACATTTTTTTCTCTTTTCCTTAGGGACTCAGAGTTGCAATGAAGTGGTTTTTGAAGGTTCTGTCTTGTAATATTGTTCTGCTG-TAT-AGAAACTCAAAAAGACTTTGTAACAATAGACCTTATTAGAATTAACTTACCTGTATTTTTACTTTATTTTtgcg--gaagaccagagtttcattattattcaaatcagacttcttgagca--tt-------------------tgttttg----------------ttttgttttaagatggagcctcgcactattgcctgggctggagtgcaatggtgtgatctcagctcactgcaacttctgcctccagggttcaagcgattctcctgcctcagccttccaagtagctgggattacaggtgcccgccaccacgcttagctgtttttttgtatttttagtagagacggtgtttcattatgttggccaggctgctctccaaatcctcacctcgtgatccgcccgcctcggcctcccaaagtgctggaattacaggcgtaagccaccgtgctcagcttaagtttttagagacaatttgacgggtaggggctagagaagtggggagtgctgattgatcaagttggagatggaatcatagggggtcgaagtgaggtttccttgctatcttctgttcctgggtaggatctcagaactgattgagccagattaccagtctaggcggtgtcagctgatccatcgagtgcagggtctgcaaattccttcccgaggttagttcggcctatgcccaggaatgaacaaggacagcttaaaggttagaagcaagatggagtcggttaggtctgatctctttcactgtcattattttctcagttataatttttgcaaaggctgtttcaatccctcccttagggtttcatagcaccttattcttaaggtgtgggctatgaagatgggaaaaggccgtcgatcactctggattcttcctgcagacagggggcatagtggggtaggtgttgaccccaaggtgagaggagtggaactgctttgcagctgtctgagctgtttgagtgtactcacgcaagccaggctgagcttccaaggctttcatgacaaaggcattcgtattctcatctacagttttagtacgacatttacacaaacagtgtacaataaggtaagtaatgagttccggaacaaggagtgccattcccagttttaaaagtaaagacttaaaagcattagtttgagcacttgtagcctcccaaaatttaggattcagtctaaatggcag--aaaaaaaaatcctcaaaaacaactaacaacaggtgtactgtagtttttgaaaca-attttttctctcttcagttcttatttttattaaaaacaaatcctgataggaccgattttgtttgtgaaataaactttaattttattatacttggcatgattatttgcaaagagcacagcaagaataattatttttcacatgggccttttaagttggctttgatggaactctgcataaagagtcttagat-aga----c-tttttttaaagcccatcccagccatgggtttgtaccctcaaatgcctatgagttgggtacattcccctcttcttgagatcccaagataacttaagattccggggccttttggaaagtgacattctttacttaccatacgttaggaaccctgtacagggactgcgtagacaaggtatgaggccagtttaccctaggggtttttattggctttgtaaatcaagtttgattccttaaacaaaagcatgccatcccagtcaaaaccttagtaaaataaacagtttctccaattgtgtcctgttgcaaaagaaaacattcttattgcacttatgcaaataattatgttgccataaattaaaaatacttgcaaatagcttccagattcttgagaaatcaggtagagagaaacaaacatgctcc-aaattttgttcacaggagtatatttttctcagttgttaaaagctgtaa-----tcaaaagaaaagttttcttggctctctgaaaaatgaaaaggaacagccacattttaagc----------------aaaaaaaaaaaggaaaagattagttcagttttctattagttcattccattcagtaaactcttgttctgcttaatgttcctgaacaagtcagctctccatgagagtcctgaacg-ttttttcctttattctaatgttgcaatctccaaagctatcagaaacttgcattcaagagcacccatccaagtttcatagctgattataaa--------------------------------------------------------------------------------------acaagaaaatgtttaacctctgtggcacacaataatttaatgtatcaattataattattactgataacatatgctaaggcatatcaaacttataagaatcttatacagttttgaaacacatgctaataaagtatttatgtgaatataacccaaagaaagttaaacatcattttatatttggccatgttttctgcatgattttaatacattaaataagcagattatatctttttggactgtaggggacctatttttgtttaacttctaatttgatcttgtcaggtttgtcaaatat----ggtttaaaacactggatgtcacaaaatagaatgccaggtcaccataagtcagttatttagccaaaatgataactcacaaagttttaaaaaggaaaaaacctttagtttgatagaaaagagactcagcttctcaaactacaagacccagtgaagcc--------gtcccctgaattggtcacttctctctcccctccctta---------------aaaggcaaacaaaattttttcattgcttctcaatattacacaagaatctttttcaaaagagaaaaccaaatttcatgtttgcattattgcacctttaatgctaaagctagtttttattaaaattttataaatctatccagctttaattagtttgaccataagttaatgttcttataaacctttt
s gorGor5.CYUI01000350v1        38796 3130 -    142253 AACAATAATGGTAAGTTATTCCAGTGAACAA----CATTATTTTCTTTATTAATGCTTAATGTTTTTCAATTCATATTTCAAATATATGTATTCTATATGAAATTTTCACAAAATGGAGAATGGCATGCTATCTAAAATGTAAAAAACACATATACATGTATATATACCCAGATATCTAGATTTTGCTGTTGCAATTATAGAAGAAAACAATGACCTCTGTGCCATTCAAAAAGCGTTTGATTTTTCCACATTTGTTTCTCTTTTCCTTAGGGACTCAGAGTTGCAATGAAGTGGTTTTTGAAGGTTCTGTCTTGTAATATTGTTCTGCTG-TATAAGAAACTCAAAAAGACTTTGTAACAATAGACCTTATTAGAATTAACTTACCTGTATTTTTACTTTATTTTtgcg--gaagaccagagtttcattattattcaaatcagacttcttgagca--tt-------------------tgttttg----------------ttttgttttaagatggagcctcgcactattgcctgggctggagggcaatggtgtgatctcagctcactgcaacttctgcctccagggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggtgcccgccaccacgcttagctatttttttgtatttttagtagagacggtgtttcattatgttggccaggctgctctccaaatcctcacctcgtgatccgcccgcctcggcctcccaaagtgctggaattacaggcgtaagccaccgtgctcagcctaagtttttaaagacaatttgacaggtaggggctagagaagtcgggagtgctgattgatcaagttggagatggaatcatagggggtcgaagtgaggtttccttgctatcttctgttcctgggtaggatctcagaactgattgagccagattaccagtctaggcgatgtcagctgatccatcgagtgcagggtctgcaaattccttcccgaggttagttcggcctatgcccaggaatgaacaaggacagcttaaaggttagaagcaagatggagtcggttaggtctgatctctttcactgtc---attttctcagttataatttttgcaaaggctgtttcaatccctcccttagggtttcatagcaccttattcttaaggtgtgggctatgaagatgggaaaaggccgtcgatcactctggattcttcctgcagacagggggcatagtggggtaggtgttgaccccaaggtgagaggagtggaactgctttacagctgtctgagctgtttgagtgtactcacgcaggccaggctgagcttccaaggctttcatgacaaaggcattcatattctcatctacagttttagtacgacatttacgcaaacagtgtacaataaggtaagtaatgagttctagaacaaggagtgccattcccagttttgaaagtaaagacttaaaagcattagtttgagcacttgtagcctcccaaaatttaggattcagtctaaatggcag---gaaaaaaatcctcaaaaacaactaacaacaggtgtactgtagtttttgaaaca-attttttctctcttcagttcttatttttattaaaaggaaatcctgataggaccgattttgtttgtgaaataaactttagttttattatacttggcatgattatttgcaaagagcaaagcaagaataattatttttcacatgggccttttaagttggctttgatggaatgctgtataaagagtcttagataaga----c-tttttttaaagcccatcccagccatgggtttgtaccctcaaatgcctatgagttgggtacattcccctcttcttcagatcccaagataacttaagattccggggcctgttgggaagtgacattctttacttaccatacgttaggaaccttgtacagggactgcgtagacaaggtatgaggccagtttaccctaggtgtttttattggctttgtaaatcaagtttgattccttaaacaaaagcatgccatcccagtcaaaaccttagtaaaataaacagtttctccaattgtgtcctgttgcaaaagaaaacattcttattgcacttatgcaaataattatgttgccataaattaagaatacttgcaaatagcttccagattcttgagaaatcaggtagagagaaacaaacatgctcc-aaattttgttcacaggagtatattttactcagttgttaaaagctgtaa-----tcaaaagaaaagttttcttggctctctgaaaaacgaaaaggaacagccacattttaagc-----------------aaaaaaaaaaggaaaagattagttcagttttctattagttcattccattcagtaaactcttgttctgcttaatattcatgaacaagtcagctctccatgagagtcctgaacg-ttttttcctttattctaatgttgcaatctccaaagctatcagaaacttgcattcaagagcacccatccaagtttcatagctgattataaa--------------------------------------------------------------------------------------acaagaaaatttttaacctctgtggcacacaataatttaatgtatcaattataattattactgataacatatgctaaggcatatcaaaattataagaatcttatacagttttgaaacacatgctaataacgtatttatatgaatataacccaaagaaagttaaacatcattttatatttggccatgttttctgcatgattttaatacattaaataagcagattatgtctttttggactgtaggggacctatttttgtttaacttctaatttgatctaggcagttttgtcaaatat----ggtttaaaacactggatgtcacaaaatagaatgccaggtcaccataagtcagttatttagccaaaatgataactcacaaagttttaaaaaggaaaaaacctttagtttgatggaaaagagactcagcttctcaaactacaagacccagtgaagacagcatgaggccagttgaattggttgcttctctctcccctccctta---------------aaaggcaaacaaaattttttcattgcctttcaatattacataagaatctttttcaaaagagaaaaccaaatttcatgtttgcattattgcacctttaatgctaaagctag-ttttattaaaattttataaatctatccagttttaattagtttgaccataagttaatgttcttataaacc-ttt
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75905151 3136 + 121039945 AACAATAATTGTAAGTTATTCCAGTAGGAGTTATTCATTATTTTCTTTATTAATGCTTAATGTTTTTCAATTCATATTTCAGGTATATGTACTCTATATTAAATTTTCATAAAATGGAGAATGGCGTGCTATCTAAAATGTAAAAAACacatatacatgtatatatacatagatatctagatTTTGCTGTTGTAAATATAGAAGAAAACAATGACCTCTGTGCCATTAAAAAAGCGTTTGATTTTCCCACATTTGTTTCTCTTTTCCTTAGGGACTCAGAGTTGCAATGAAGTGGTTTTTGAAGGTTCTGTCTTGTAATATTGTTCTGCTGTTAT-AGAAACTCAAAAAGACTTTGTAACAATAGACTTTATTAGAATTAACTTACCTGTATTTTTACTTTATTTTtgcg--gaagaccagagtttcattattattcaaatcagacttcctgagca--tt-------------------tgttttg----------------ttttgttttaagatggagcctcgcactgtctcctgggctggagtgcaatggtgtgacctcagctcactgcaacttctgcctccagggttcaagcgattctcctgcctcagcctcccaagtttctgggattacaggtgcccaccaccacgcctggc--tttttttgtagttttagtagagacggtgtttcattatgttggccaggctgctctccaaatcctcacctcgtgat-cgcccacctcagcctcccaaagtgctggaattacaggcgtaagccaccatgctcagcctaagtttttaaagacaatttgaccggtatgggctaaggaagtggggagtgctgattgattaagttggagatggaatcatagggggtcaaagtaaggttttcttgctgtcttctgttcctgggtaggatctcagaactaattgagccagattaccagtctaggtggtgtcagctgatccatcgagtgcagggtctgcaaattccttcccgaggttatttcggcctatgcccaggaatgaacaaggacagcttaaaggttagaagcaagatggagtcagttaggtctgatctctttcactgtcataattttctcagttataatttttgcaaagcctgtttcaatccctcccttagggtttcat-gcaccttattcttaaggtgtgggctatgaagatgggaaaaggccgtcgatcactctggattcttcctgcagacagtgggcatagtggggtaggtgttgaccccaaggtgagaggagcggaactgctttgcagctgtctgagctgtttgcatgtactcatgcaggccaggctgaggttccaaggctttcatgacaaaggcattcatattctcctctacagttttagtacaacatttaagcaaacagtgtacaataaggtaagtaatgagttctagaacaaggagtgcaattcccagttttaaaagtaaagatttaaaagcattagtttgagcacttgtggcctcccaaaatttaggattcagtctaaatggcag--aaaaaaagatcctcaaaaacaactaacaacaggtgtattatagtttttgaaaca-tttttttctgtcttcagttcttacttttattaaaaacaaatcctgataggaccaattttgtttgtgaaataaactttagttttattatacttggcatgattatgtgcatagagcatagcaagaataattatttttcacataggccttttaagttggctttgatggaaccctgtataaagagtcttagataaga----cttttttttaaagcccatcccagccatgggtttgtaccctcaaatgcctatgagttgggtaca-tcctctcttcttgagatcctaagataacttaagattcctgggcctgttggaaagtgacattctttatttaccatatgttaggaaccctgtacagggactgcacagacaaggtatgaggccagtttaccctcggggtttttattggctctgtaaatcaagtttgattccttaaacaaaagcatgccatcccagtcaaaaccttagtaaaataaacattttctccaattgtgtcctgttgcaaaagaaaacattcttattgcacttatgcaaataattatgttgccataaattaagaatacttgcagatatcttccagattcttgagaaatcaggt----agaaacaaacatgctcc-aaattttgttcacaggagtatattttactcagttgttaaaagctgtaa-----tcaaaagaaaagttttcttggctctctgaaaaacgaaaaggagcagccacattttaagcaaaa-----------aaaaaaaaaaaaggaaaagattacttcagttttctattagttcattccattcagtaaacccttgttctgcttaatattcatgaacaagccagctctccatgacagtcctgaacg-ttttttcctttattctaatgttgtaatctccaaagctgtcagaaacttgcattcaagagcacccatccaagtttcatagctgattataaa--------------------------------------------------------------------------------------acaagaacatttttaagctctgtggcacacaataatttaacatatcaattataattattactgataacatatgctaaggcatatcaaaattataggaatcttatacagttttgaaacacatgctaataatgtatttatatgaatataacccaaagaaagttagacatcatttaatatttggccatgttttctgcatgattttaatacattaaataagcagactatatctttttggactgtaggggacctatttttgtttaacttgaaatttgatcttggcaggtttgtcaaatat----ggtttaaaacactggatatcacaaaatagaatgccaggtcaccataagtcagttatttagccaaaatgataactcacaaagttttaaaaaggaaaaaacctttggtttgatagaaaagagactcagcttctcaaactacaagacccagtgaagacagcatgaggccaattgaattggtctcttctctct--cctccctta---------------aaaggcaaacaaaattttttcattgcctctcaatattacataagaatcttttttaaaagagaaaaccaaatttcatgtttgcattattgcacctttaatgctaaagctagtttttattaaaattttataaatctatccagttttaattagtttgaccataagttaatgttcttataaacctttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr15             108353766 3253 + 111343173 AACAATAATTCTAAGTTATTTCAGTAGGATTTATTCATTGT----TTTATTAATGCTTAATATTTTCCAATTCACCTTTCATGTATATGTATTCTATATAAAATTTGTATAAAATGGAGAATGACATACTATCTAAAGTGTAAAAAACACATATACATGTATACATACACAGATATATAGATTTTGCTGTTGTAATTATAGAAGAAAACAATGACCTCGGTGCCATTAAAAAAGCACTGGATTTTTCCACATATGTTTTTCTCTTCCTTAGGGACGCAGAGTTGCAATGAGATGACTTTTGAAGGTTCTGTCTTGTAATATTGTTCTGCTGTTGT-ATAAATTCAAAAAGCCTTTGTAACAACAGAC--TATTCGAATTAATTTACCTGCATTTTTACTTTATTTTtgct--gaagaccagagttttattattattcaaatcagacttcatgagca--tttggggatctaagtgtttt-ttgtttg----tttgttttt--ttttttttttgagatggagtctcacactgttacctgggctggagtgcaatggtgtcatcttggctcactgcaacctctgcttcctggattcaagcaattctcctgcttcagcctcctgagtgtctgggattacaggtgcctgccaccactctcagctaattttttgtatttttagtagaaacaggatttcactatgttggccaggttggtctcgatctcctgaccttgtgatctgcatccctcggcctcccgaagtgctggaattacaggtgtgagccaccgtgcctggcctaagtttttaaagataattaggtgggaaggggctagggaagtggggagtgctgattgatcaagttggagatggaatcatagggggttgaagtgaggtttccttgccgtcttctgttcctgggtgggatctcagaact----------gattaccagtctaggtggtgtcagctgattcatctagtgcagggtctgcaaaTTCCTtcccgaggttagctaggcctatgcccaggaatgaacaaggacagcttaaaggttagaagcaagatggagtcggttaggtctga--tctttcactgtcataatttcctcagttataatttttgcaaagactgtttcaatccctcccttagggtttcatagcacctcatttttaaggtgtgggctgtgaagatgggaaaaggccattgatcgctctggcttcttcccactgacag-ggacatagtaggcgaggtgttgaccccaaggtgagaggagtggaactgcttcgcagctatctgagctgtttaagcatactcacacaggccaggctgaggttccaaggctttcatgacaaaggcactcatattctcatgtacagttttagtatgacatttaagcaaacagtgtacaataaggtaaatagtgagttctaaaacaaagagtgcaattaccagctttaaaagtaaagatttaaaagcattagtttgggcacttttagcctcccaaaatttaggattcagtctaaattgcagaaaaaaaaaaa-----aaaaacaactaacaacagatgtactgtagtttttgaaacataatttttctctcttcagtccttatttttattaaata-----------aggaccaa-tttgtttgtgaaataaactttagttttattatacttggcatgattattta---aaagcacagcaagaataagtatttttcacataggccttttaaattggctttgatgtaactctgtataaagagtctcagataaga----c-----tttaaagcccatcccagccatgggtttgtaccctcaaatgcctatcagttgggtaaattcctctctttttgagatcccaagataacttaagattcctgggcctgttggaaagtgacattctttacttaccgtaggttaggaaccctgtacagggattgtgtagacaaagtatgaggccagttttccctaggggtttttattggctctataagtcaagtttgattccttaaacaaaagcatgccattccagtcaaagcctttgtaaaataaccattttctccagttgtgtcctgttgcaaaagaaaacattcttagtgcacttatgcaaacaattatgttgccataaattaagaatacttgcaaataacttccagattctggagaaatcaggtagagagaaacaaatatgctctaaaattttgttcacaggagtatattttactcaattgttaaaagctgtaagtagctcaaaagaaatgttttcttgg--ctctgaaaaatgaaaagaatcagccacgttttaaacaaaaaaaaaaaaagaaaaaaaagcaaaggaaaagattagttcagttttctattagctcattccattcagtaaactcctgttctgcttaatattcatgaacatttcagctttctatgagagtcctaaaca-ttttttcctttattctaatgttgcaatctccaaagctagcagaaacttgcattcaagaacacctgtcaaagttttatagctgattataaaaccatcttctaaagaggatcaaaacaagacaacaattgtctgtggatgagaaaacattttagggcagccacagtcaaacacaattgacaagaaaatttctaacctctgtggcacacaataatttaaaatagcagttgtaattattactgatagcgtatgctaaggcatatcagaattataggaatcttacacaattttgaaacacatgctaataacatattaatatgaatataacccaaagaaagttaaacagcatcttataattggctgtatttcctgcatgattttaatatattaaataagcagactatgtctttttggactgtaggggacctattgttttttaactttgaatttgatcttggcagctttgtcaaatatcaagggtttaaaacactggatgtcacaaaatagaatcctaggtcaccataagtcatttatttagccaaaatgataactcacaaagttttaaaaaggaaaaaacccttagtttgatagaaaagagactcagcttctcaaactacaagacccagtgaagacagcatgaagccagttgaatcggtcccttctctctcccctcccttttttggggtttactt-aaaggcaaacaaaattttttcattgtctctcaatattacataagaatctttttcaaaagaaaaaacaaaatttcatgtttgcattagtgcatctttaatgctaaagctagtttttagtaaaattttaaaaatctatccagttttaattagtttgaccataagttaatgtttttataaacctttt
i rheMac8.chr15             C 0 I 2024
s macFas5.chr15             106265052 3253 + 112612857 AACAATAATTCTAAGTTATTTCAGTAGGATTTATTCATTGT----TTTATTAATGCTTAATATTTTCCAATTCACCTTTCATGTATATGTATTCTATATAAAATTTGTATAAAATGGAGAATGACGTACTATCTAAAGTGTAAAAAACACATATACATGTATACATACACAGATATATAGATTTTGCTGTTGTAATTATAGAAGAAAACAATGACCTCGGTGCCATTAAAAAAGCACTGGATTTTTCCACATATGTTTTTCTCTTCCTTAGGGACGCAGAGTTGCAATGAGATGACTTTTGAAGGTTCTGTCTTGTAATATTGTTCTGCTGTTGT-ATAAATTCAAAAAGCCTTTGTAACAACAGAC--TATTCGAATTAATTTACCTGCATTTTTACTTTATTTTtgct--gaagaccagagttttattattattcaaatcagacttcctgagca--tttggggatctaagtgtttttttttttg----tttgttttt-gttttttttttgagatggagtctcacactgttacctgggctggagtgcaatggtgtcatcttggctcactgcaacctctgcttcctggattcaagcaattctcctgcttcagcctcctgagtgtctgggattacaggtgcctgccaccactctcagctaattttttgtatttttagtagaaacaggatttcactatgttggccaggttggtctcgatctcctgaccttgtgatctgcatccctcagcctcccaaagtgctggaattacaggtgtgagccaccgtgcccggcctaagtttttaaagataatttggtgggaaggggctagggaagtggggagtgctgattgatcaagttggagatggaatcatagggggttgaagtgaggtttccttgccgtcttctgttcctgggtgggatctcagaact----------gattaccagtctaggtggtgtcagctgattcatctagtgcagggtctgcaaaTTCCTtcctgaggttagctaggcctatgcccaggaatgaacaaggacagcttaaaggttagaagcaagatggagtcggttaggtctga--tctttcactgtcataatttcctcagttataatttttgcaaagactgtttcaatccctcccttagggtttcatagcacctcatttttaaggtgtgggctgtgaagatgggaaaaggccattgatcgctctggcttcttcccactgacag-ggacatagtaggctaggtgttgaccccaaggtgagaggagtggaactgcttcgcagctatctgagctgtttaagcgtactcacacaggccaggctgaggttccaaggctttcatgacaaaggcactcatattctcatgtacagttttagtatgacatttaagcaaacagtgtacaataaggtaaatagtgagttctaaaacaaagagtgcaattaccagctttaaaagtaaagatttaaaagcattagtttgggcacttttagcctcccaaaatttaggattcagtctaaattgcag--aaaaaaaaa-----aaaaacaactaacaacagatgtactgtagtttttgaaacataatttttctctcttcagtccttatttttattaaata-----------aggaccaa-tttgtttgtgaaataaactttagttttattatacttggcatgattattta---aaagcacagcaagaataagtatttttcacataggccttttaaattggctttgatgtaactctgtataaagagtctcagataaga----c-----tttaaagcccatcccagccatgggtttgtaccctcaaatgcctatgagttgggtaaattcctctctttttgagatcccaagataacttaagattcctgggcctgttggaaagtgacattctttacttaccgtaggttaggaaccctgtacagggattgtgtagacaaagtatgaggccagttttccctaggggtttttattggctctataagtcaagtttgattccttaaacaaaagcatgccattccagtcaaagcctttgtaaaataaccattttctccagttgtgtcctgttgcaaaagaaaacattcttagtgcacttatgcaaacaattatgttgccataaattaagaatacttgcaaataacttccagattctggagaaatcaggtagagagaaacaaatatgctctaaaattttgttcacaggagtatattttactcaattgttaaaagctgtaagtagctcaaaagaaatgttttcttgg--ctctgaaaaatgaaaagaatcagccacgttttaaacaaaaaaaaaaaaagaaaaaaaagaaaaggaaaagattagttcagttttctattagctcattccattcagtaaactcctgttctgcttaatattcatgaacatttcagctttctatgagagtcctaaaca-ttttttcctttattctaatgttgcaatctccaaagctagcagaaacttgcattcaagaacacctgtcaaagttttatagctgattataaaaccatcttctaaagaggatcaaaacaagacaacaattgtctgtggatgagaaaacattttagggcagccacagtcaaacacaattgacacgaaaatttgtaacctctgtggcacacaataatttaaaatagcagttgtaattattactgataacgtatgctaaggcatatcagaattataggaatcttacacaattttgaaacacatgctaataacatattaatatgaatataacccaaagaaagttaaacagcatcttataattggctgtatttcctgcatgattttaatatattaaataagcagactatgtctttttggactgtaggggacctattgttttttaactttgaatttgatcttggcagctttgtcaaatatcaagggtttaaaacactggatgtcacaaaatagaatcctaggtcaccataagtcatttatttagccaaaatgataactcacaaagttttaaaaaggaaaaaacccttagtttgatagaaaagagactcagcttctcaaactacaagacccagtgaagacagcatgaggccagttgaatcggtcccttctctctcccctcccttttttggggtttactt-aaaggcaaacaaaattttttcattgtctctcaatattacataagaatctttttcaaaagaaaaaacaaaatttcatgtttgcattagtgcatctttaatgctaaagctagtttttagtaaaattttaaaaatctatccagttttaattagtttgaccataagttaatgtttttataaacctttt
i macFas5.chr15             C 0 I 2025
s macNem1.NW_012012133v1     22645345 3236 +  28977278 AACAATAATTCTAAGTTATTTCAGTAGGATTTATTCATTGT----TTTATTAATGCTTAATATTTTCCAATCCACCTTTCATGTATATGTATTCTATATAAAATTTTTATAAAATGGAGAATGACATACTATCTAAAGTGTAAAAAACACATATACATGTATACATACACAGATATATAGATTTTGCTGTTGTAATTATAGAAGAAAACAATGACCTCGGTGCCATTAAAAAAGCACTGGATTTTTCCACATATGTTTTTCTCTTCCTTAGGGACGCAGAGTTGCAATGAGATGACTTTTGAAGGTTCTGTCTTGTAATATTGTTCTGCTGTTGT-GTAAATTCAAAACGCCTTCGTAACAACAGAC--TATTAGAATTAATTTACCTGCATTTTTACTTTATTTTTGCTGCgaagaccagga----gttattattcaaattcaacttcctgagcatgttgggggatctaag-------ttttttg----t----------ttttttttttgagatggagtctcacactgttacctgggctggagtgcaatggtgccatcttggctcactgcaacctctgcctcctggattcaagcaattctcctgcttcagcctcctgagtgtctgggattacaggtgcctgccaccactctcagctaattttttgtatttttagtagaaacaggatttcactatgttggccaggttggtctcgatctcctgaccttgtgatctgcatccctcggcctcccaaagtgctggaattacaggtgtgagccaccgtgcctggcctaagtttttaaagataatttggtgggaaggggctagggaagtggggagtgctgattgatcaagttggagatggaatcatagggggttgaagtgaggtttccttgccgtcttctgttcctgggtgggatctcagaact----------gattaccagcctaggtggtgtcagctgattcatctagtgcagggtctgcaaaTTCCTtcccgaggttagctaggcctatgcccaggaatgaacaaggacagcttaaaggttagaagcaagatggagtcggttaggtctga--tctttcactgtcataatttcctcagttaaaatttttgcaaagactgtttcaatccctcccttagggtttcatagcacctcatttttaaggtgtgggctgtgaagatgggaaaaggccattgatcgctctggcttcttcccactgacag-ggacatagtaggctaggtgttgaccccaaggtgagaggagtggaactgcttcacagctatctgagctgtttaagcatactcacaca-gccaggctgaggttccaaggctttcatgacaaaggcactcatattctcatgtacagttttagtatgacatttaagcaaacagtgtacaataaggtaaatagtgagttctaaaacaaagagtgcaattaccagctttaaaagtaaagatttaaaagcattagtttgggcacttttagcctcccaaaatttaggattcagtctaaattgcag-aaaaaaaaaa-----aaaaacaactaacaacagatgtactgtagtttttgaaacataatttttctctcttcagtccttatttttattaaata-----------aggaccaa-tttgtttgtgaaataaactttagttttattatacttggcatgattattta---aaagcacagcaagaataagtatttttcacataggccttttaaattggctttgatgtaactctgtataaagagtctcagataaga----c-----tttaaagcccatcccagccatgggtttgtaccctcaaatgcctatgagttgggtaaattcctctctttttgagatcccaagataacttaagattcctgggcctgttggaaagtgacattctttacttaccgtaggttaggaaccctgtacagggattgtgtagacaaagtatgaggccagttttccctaggggtttttattggctctataagtcaagtttgattccttaaacaaaagcatgccattccagtcaaagcctttctaaaataaccattttctccagttgtgtcctgttgcaaaagaaaacattcttagtgcacttatgcaaacaattatgttgccataaattaagaatacttgcaaatagcttccagattctggacaaatcaggtagagagaaacaaatatgctctaaaattttgttcacaggagtatattttactcaattgttaaaagctgtaagtagctcaaaagaaatgttttcttgg--ctctgaaaaatgaaaagaatcagccacgttttaaacaaaaaaaaaaaaag-aaaaaaagaaaaggaaaagattagttcagttttctattagctcattccattcagtaaactcctgttctgcttaatattcatgaacatttcagctttctatgagagtcctaaaca-ttttttcctttattctaatgttgcaatctccaaagctagcagaaacttgcattcaagaacacctgtcaaagttttatagctgattataaaaccatcttctaaagaggatcaaaacaagacaacaattgtctgtggatgagaaaacattttagggcagccacagtcaaacacaattgacaagaaaatttgtaacctctgtggcacacaataatttaaaatagcagttgtaattattactgataacgtatgctaaggcatatcagaattataggaatcttacacaattttgaaacacatgctaataacatattaatatgaatataacccaaagaaagttaaacagcatcttataattggctgtatttcctgcatgattttaatatattaaataagcagactatgtctttttggactgtaggggacctattgttttttaactttgaatttgatcttggcagctttgtcaaatatcaagggtttaaaacactggatgtcacaaaatagaatcctaggtcaccataagtcatttatttagccaaaatgataactcacaaagttttaaaaaggaaaaaacccttagtttgatagaaaagagactcagcttctcaaactacaagacccagtgaagacagcacgaggccagttgaatcagtcccttctctctcccctcccttttttggggtttactt-aaaggcaaacaaaattttttcattgtctctcaatattacataagaatctttttcaaaagaaaaaacaaaatttcatgtttgcattagtgcatctttaatgctaaagctagtttttagtaaaattttaaaaatctatccagttttaattagtttgaccataagttaatgtttttataaacctttt
i macNem1.NW_012012133v1    C 0 I 2915
s cerAty1.NW_012000030v1      1914492 3241 +   8072957 AACAATAATTCTAAGTTATTTCAGTAGGATTTATTCATTGT----TTTATTAATGCTTAATATTTTCCAATTCACATTCC-TGTATATGTATTCTATATAAAATTTGTATAAAATGGAGAATGACATACTATCTAAAGTGTAAAAAACACATATACATGTATACATACACAGATATATAGATTTTGCTGTTGTAATTATAGAAGAAAACAACGACCTCGGTGCCATTAAAAAAGCACTGGATTTTTCCACATATGTTTTTCTCTTTCTTAGGGACGCAGAGTTGCAATGAGATGACTTTTGAAGGTTCTGTCTTGTAATATTGTTCTGCTGTTGT-GTAAATTCAAAAAGCCTTTGTAACAACAGAC--TATTAGAATTAATTTACCTGCATTTTTACTTTATTTTtgct--gaagaccagagttttattattattcaaatcagacttcctgagca--tttggggatctaagtggtt--ttttttg----tttttttgt-ttttttgttttgagatggagtctcacactgttacctgggctggagtgcaatggtgccatcttggctcactgcaacctctgcctcctggattcaagcaattctcctgcttcagcctcctgagtgtctgggattacaggtgcctgccaccactctcagctaattttttgtatttttagtagaaacaggatttcactatgttggccaggttggtctcgatctcctgaccttgtgatctgcatccctcggcctcccaaagtgctggaattacaggtgtgagccaccgtgcccggcctaagtttttaaagataatttggtgggaaggggctagggaagtggggagtgctgattgatcaagttggagatggaatcatagggggttgaagtgaggtttccttgccgtcttctgttcctgggtgggatctcagaact----------gattaccagtctaggtggtgtcagctgattcatctagtgcagggtctgcaaattccttcccaaggttagttcagcctatgcccaggaatgaacaaggacagcttaaaggttagaagcaagatggagtcggttaggtctga--tctttcactgtcataatttcctcagttataatttttgcaaagactgtttcaatccctcccttagggtttcatagcacctcatttttaaggtgtgggctgtgaagatgggaaaaggccattgatcgctctggcttcttcccactgacag-ggacatagtaggctaggtgttgaccccaaggtgagaggagtggaactgcttcgcagctgtctgagctgtttaagcgtactcacacaggccaggctgaggttccaaggctttcatgacaaaggcactcatattctcatgtacagttttagtatgacatttaagcaaacagtgtacaataaggtaaatagtgagttctaaaacaaagagtgcaattaccagctttaaaagtaaagatttaaaagcattagtttgggcacttttagccttccaaaatttaggattcagtctaaattgcag----aaaaaaa-----aaatacaactaacaacaggtgtgctgtagtttttgaaacataatttttctctcttcagtccttatttttattaaata-----------aggaccaa-tttgtttgtgaaataaactttagttttattatacttggcatgattattta---aaagcacagcaagaataagtatttttcacataggccttttaaattggctttgatgtaactctgtataaagagtctcagataaga----c-----tttaaagcccatcccagccatgggtttgtaccctcaaatgcctatgagttgggtaaattcctctctttttgagatcccaagataacttaagattcctgggcctgttggaaggtgacattctttacttaccgtaggttaggaaccctgtacagggattgtgtagacaacgtatgaggccagttttccctaggggtttttattggttctataagtcaagtttgattccttaaacaaaagcatgccattccagtcaaagccttcgtaaaata---attttctccagttgtgtcctgttgcaaaagaaaacattcttagtgcacttatgcaaacaattatgttgccataaattcagaatacttgcaaataacttccagattctggagaaatcaggtagagagaaacaaatatgctctaaaattctgttcacaggagtatattttactcaattgttaaaagctgtaagtagctcaaaagaaatgttttcttgg--ctctgaaaaatgaaaagaatcagccacattttaaacaaaaaaaaga-----aaaaaaagcaaaggaaaagattagttcagttttctattagctcgttccattcagtaaactcctgttctgcttaatattcatgaacatttcagctttctatgagagtcctaaacatttttttcctttattctaatgttgcaatctccaaagctagcagaaacttgcactcaagaacacctgtcaaagttttatagctgattataaaaccatcttctaaagaggatcaaaacaagacaacaattgtctgtggatgacaaaacattttagggcagccacagtcaaacacaattgacaagaaaatttgtaacctctgtggcacacaataatttaaaatagcagttataattattactgataatgtatgctaaggcatatcagaattataggaatcttacacaattttgaaacacatgctaataacatattaatatgaatataacccaaagaaagttaaacagcatcttataattggctgtatttcctgcatgattttaatatattaaataagcagactatgtctttttggactgtaggggacctactgttttttaactttgaatttgatcttggcagctttgtcaaatatcaagggtttaaaacactggatgtcacaaaatagaatcctaggtcaccataagtcatttatttagccaaaatgataactcacaaagttttaaaaaggaaaaaacccttagtttgatagaaaagagactcagcttctcaaactacaagacccagtgaagacagcatgaggccagttgaatcggtcccttctctctcccctcccttttttggggtttactt-aaaggcaaacaaaattttttcattgtctctcaatattacataagaatctttttcaaaagaaaaaaccaaatttcatgtttgcattagtgcatctttaatgctaaagctagtttttagtaaaattttaaaaatctatccagttttaattagtttgaccataagttaatgtttttataaacctttt
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102632444 3267 + 108555830 AACAATAATTCTAAGTTATTTCAGTAGGATTTATTCAATGT----TTTATTAATGCTTAATATTTTCCAATTCACCTTTCATGTATATGTATTCTATATAAAATTTGTATAAAATGGAGAATGACATACTATCTAAAGTGTAAAAAACACATATACCTGTATACATACACAGATATATAGATTTTGCTGTTGTAATTATAGAAGAAAACCATGACCTCGGTGCCATTAAAAAAGCACTGGATTTTTCCAC--ATGTTTTTCTTTTCCTTAGGGACTCAGAGTTGCAATGAAGTGGTTTTTGAAGGTTCTGTCTTGTAATATTGTTCTGCTGTTGT-ATAAACTCAAAAAGCCTTTGTAACAACAGAC--TATTAGAATTAATTTACCTGCATTTTTACTTTATTTTtgct--gaagaccagagttttattattattcaaatcagacttcctaagca--tttggggatctaagtg-----ttttttg----tttgtttgtttgtttgtttttgagatggagtctcacactgttacctgggctggagtgcaatggtgccatcttggctcactgcaacctctgcctcctggattcaagcaattctcctgcctcagcctcctgagtgtctgagattacaggtgcctgccaccactctcagctaattttctgtatttttagtagagacaggatttcactatgttggccaggttggtcttgaactcctgaccttgtgatccacatgcctctgcctcccaaagtgttagaattacaggtgtaagccaccgtgcctggcctaagtttttaaagataatttggtgggaaggggctagggaagtggggagtgctgattgatcaagttggagatggaatcatagggggttgaagtgaggtttccttgccgtcttctattcctgggtgggatctcagaactgattgagccagattaccagtctaggtggtgtcagctgattcatctagtgcagggtctacaaattccttcccgaggttagttcagtctgtgcccaggaatgaacaaggacagcttaaaggttagaagcaagatggagtcggttaggtctga--tctttcactgtcataatttcctcagttataatttttgcaaagactgtttcaatccctcccttagggtttcatagcaccttattcttaaggtgtgggctgtgaagatgggaaaaggccattgagcgctctggctccttcctgctgacag-ggacatagtgggctaggtgttgaccccaaggtgagaggagtggaactgcttcgcagctgtctgagctgtttgagcgtactcacacaggccaggctgaagttccaaggctttcatgacaaaggcagtcatattctcatctacagttttagtatgacatttaagcaaacagtgtacaataaggtaaataatgagttatagaataaggagtgtaattcccagttttaaaagtaaagatttaaaagcattagtttgggcacttttagcctcccaaaatttagggttcagtctaaattgcag-----aaaaaa-----acatacaactaacaacaggtgtactgtagtttttgaaacataatttttctctcttcagtccttatttttattaaaaacaaatcctaataggaccga-tttgtttgtgaaataaactttagttttactacacttggcaagattatttgcatacagcacagcaagaataattatttttcacatgggccttttaaattggctttgatggaactctatataaagagtcttagataagactttc-----tttaaggcccatcccagccatgggtttgtaccgtcaaatgcctatgagttgggtaaattcctctctttttgagatcccaagataacttaacattcctgggcctgttggaaagtgacattctttacttaccgtaggttaggaaccctgtacagggattgcatagacaaactatgaggccagttttccctaggggtttttattggctctagaagtcaagtttgattccttaaacaaaagcatgccattccagtcaaagcctttgtaaaataatcattttctccagtcatgtcctgttgcaaaagaaaacattcttagtgcacttatgcagataattatgttgccataaattaagaatacttgaaaatagctttgagattctggagaaatcaggtagagagaaacaaatatgctcc-aaattttgttcacaggaatacattttactcaattgttaaaagttgtaagtagctcaaaagaaacgttttcttgg--ctctgaaaaatgaaaaggatcagctacgttttaagc-aaaaaaaga-----aaaaaaagcaaaggaaaagattagttcagttttctattagctcattccatttagtaaactcctgttctgcttaatattcgtgaacatttcagctttctatgagagtcctaaacatttttttcctttattctaaagttacaatctccaaaggtagcagaaacttgcattcaagaatacctgtcaaagttttatagctgattataaaaccatcttctaaagaggatcaaaacaagacaacaattgtctggtgatgagaagacattttagggcagccaaagtcgaacacaattgacaagaaaatttgtaacctctgtggcacacaataatttaaaatagcagttataattattactgataacgtatgctaaggcatatcagaattataggaatcttacacaattttgaaacacatgctaataacatattaatataaatataacccaaagaaagttaaacagcatcttatatttggcggtgtttcctgcatgattttaatacattaaataagcagactatgtctttttggactgtaggggacctattgttttttaactctgaatttgatcttgtcagctttgtcaaatatcaggggtttaaaacagtggatgtcacaaaatagaatcctaggtcaccataagtcatttatttagccaaaatgataactcacaagttttaaaaaggaaaaaaacccttagtttgacagaaaagagactcagcttctcaaactacaagacccagtgaggacagcatgaggcctgttgaatcggtcccttctctctcccctcccttttttggggtttacttaaaaggcaaacaaaattttttcattgtctctcaatattacataagaatctttttcaaaagaaaaaacgggatttcatgtttgcattagtgcatctttaatgctaaagctagtttttattaaaattttaaaaatctatccagttttaactagcttgaccatatgttaatgtttttataaacctttt
i chlSab2.chr12             C 0 I 2021
s manLeu1.NW_012104154v1      2127442 3238 +   2144893 AACAATAATTCTAAGTTCTTTCAGTAGGATTTATTCATTGT----TTTATTAATGCTTAATATTTTCCAATTCACCTTTCATGTATATGTATTCTATATAAAATTTGTATAAAATGGAGAATGACATACTATCTAAAGTGTAAAAAACACATATACATGTATACATACACAGATATATAGATTTTGCTGTTGTAATTATAGAAGAAAACAATGACCTCGGTGCCATTAAAAAAGCACTGGATTTTTCCACATATGTTTTTCTTTTCCTTAGGGACGCAGAGTTGCAATGAGATGACTTTTGAAGGTTCTGTCTTGTAATATTGTTCTGCTGTTGT-GTAAATTCAAAAAGCCTTTGTAACAACAGAC--TATTAGAATTAATTTACCTGCATTTTTACTTTATTTTtgct--gaagaccagagttttattattattcaaatc---------gagca--tttggggatctaagtggtt--ttttttggttttttttttttttttttttttttgagatggagtctcacactgttacctgggctggagtgcaatggtgccatcttggcttactgcaacctctgcctcctggattcaagcaattctcctgcttcagcctcctgagtgtctgggattacaggtgcctgccaccactctcagctaattttttgtatttttagtagaaacaggatttcactatgttggccaggttggtctcgatctcctgaccttgtgatctgcatccctcggcctcccaaagtgctggaattacaggtgtgagccaccgtgcccggcctaagtttttaaagataatttggtgggaaggggctagggaagtggggagtgctgattgatcaagttggagatggaatcatagggggttgaagtgaggtttccttgccgtcttctgttcctgggtgggatctcagaact----------gattaccagtctaggtggtgtcagctgattcatctagtgcagggtctgcaaaTTCCTtcccgaggttagctaggcctatgcccaggaataaacaaggacagcttaaaggttagaagcaagatggagtcggttaggtctga--tctttcactgtcataatttcttcagttataatttttgcaaaggctgtttcaatccctcccttagggtttcatagcacctcatttttaaggtgtgggctgtgaagatgggaaaaggccattgatcgctctggcttcttcccactgacag-ggacatagtaggctaggtgttgaccccaaggtgagaggagtggaactgcttcgcagctgtctgagctgtttaagcgtactcacacaggccaggctgaggttccaaggctttcatgacaaaggcactcatattctcatgtacagttttagtatgacatttaagcaaacagtgtacaataaggtaaatagtgagttctaaaacaaagagtgcaattaccagctttaaaaataaagatttaaaagcattagtttgggcacttttagccttccaaaatttaggattcagtctaaattgcag---aaaaaaaa-----aaatacaactaacaacaggtgtactgtagtttttgaaacataatttttctctcttcagtccttatttttattaaata-----------aggaccaa-tttgtttgtgaaataaactttagttttattatacttggcatgattattta---aaagcacagcaagaataagtatttttcacataggccttttaaattggctttgatgtaactctgtataaagagtctcagataaga----c-----tttaaagcccatcccagccatgggtttgtaccctcaaatgcctacgagttgggtaaattcctctctttttgagatcccaagataacttaagattcctgggcctgttggaaagtgacattctttacttaccgtaggttaggaaccctgtacagggattgtgtagacaacgtatgaggccagttttccctaggggtttttattggctctataagtcaagtttgattccttaaacaaaagcatgccattccagtcaaagcctttgtaaaata---attttctccagttgtgtcctgttgcaaaagaaaacattcttagtgcacttatgcaaacaattatgttgccataaattaagaatacttgcaaataacttccagattctggagaaatcaggtagagagaaacaaatatgctctaaaattttgttcacaggagtatattttactcaattgttaaaagctgtaagtagctcaaaagaaatgttttcttgg--ctctgaaaaatgaaaagaatcagccacattttaaacaaaaaaaaga-----aaaaaaagcaaaggaaaagattagttcagttttctattagctcattccattcagtaaactcctgttctgcttaatattcatgaacatttcagctttctatgagagtcctaaaca-ttttttcctttattctaatgttgcaatctccaaagctagcagaaacttgcattcaagaacacctgtcaaagttttatagctgattataaaaccatcttctaaagaggatcaaaacaagacaacaattgtctgtggatgacaaaacattttagggcagccacagtcaaacacaattgacaagaaaatttgtaacctctgtggcacacaataatttaaaatagcagttataattattactgataatgtatgctaaggcataccagaattataggaatcttacacaattttgaaacacatgctaataacatattaatatgaatataacccaaaaaaagttaaacagcatcttataattggctgtatttcctgcatgattttaatatattaaatcagcagactatgtctttttggactgtaggggacctactgttttttaactttgaatttgatcttggcagctttgtcaaatatcaagggtttaaaacactggatgtcacaaaatagaatcctaggtcaccataagtcatttatttagccaaaatgataactcacaaagttttaaaaaggaaaaaacccttagtttgatagaaaagagactcagcttctcaaactacaagacccagtgaagacagcatgaggccagttgaatcggtcccttctctctcccctcccttttttggggtttactt-aaaggcaaacaaaattttttcattgtctctcaatattacataagaatctttttcaaaagaaaaaaccaaatttcatgtttgcattagtgcatctttaatgctaaagctagtttttagtaaaattttaaaaatctatccagttttaattagtttgaccataagttaatgtttttataaacctttt
i manLeu1.NW_012104154v1    C 0 I 2147
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e colAng1.NW_012115910v1      6779793  657 -   6934359 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609    0 -     21860 C

a score=1092.000000
s hg38.chr15_KI270851v1_alt     38696 2 +    263054 at
s gorGor5.CYUI01000350v1        41926 2 -    142253 at
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75908287 2 + 121039945 at
i nomLeu3.chr6              C 0 C 0
s cerAty1.NW_012000030v1      1917733 2 +   8072957 at
i cerAty1.NW_012000030v1    C 0 I 2023
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e colAng1.NW_012115910v1      6779793 657 -   6934359 I
e manLeu1.NW_012104154v1      2130680 2147 +   2144893 I
e macNem1.NW_012012133v1     22648581 2915 +  28977278 I
e rheMac8.chr15             108357019 2024 + 111343173 I
e chlSab2.chr12             102635711 2021 + 108555830 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609 0 -     21860 C
e macFas5.chr15             106268305 2025 + 112612857 I

a score=50324.000000
s hg38.chr15_KI270851v1_alt     38698 186 +    263054 aaccctttacaatttagttgttgttgttacagagcagaaccatgttttaagaaaactctgttatgcttttattccaatgttcaacttatggaaacattgactaatacccctttaactttagccaatatgtttacacacagaatctcttttacaattaattttttataaacttttcacaacttgctt
s gorGor5.CYUI01000350v1        41928 186 -    142253 aaccctttacaatttagttgttgttgttacagagcagaaccatgttttaagaaaactctgttatgcttttattccaatgttcaacttatggaaacattgactaatacccctttaactttagccaatatgtttacacacagaatctcttttacaattaattttttataaacttttcacaacttgctt
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75908289 186 + 121039945 aaccctttacaatttagttgctgttgttacagagcagaaccatgttttaagaaaactctgttatgcttttattccaatgttcaacttatggaaacattgactaatacccctttaactttagccaatatgtttacacacagaatgtcttttacaattaattttttataaagctttcataatttgctt
i nomLeu3.chr6              C 0 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e colAng1.NW_012115910v1      6779793 657 -   6934359 I
e manLeu1.NW_012104154v1      2130680 2147 +   2144893 I
e cerAty1.NW_012000030v1      1917735 2023 +   8072957 I
e macNem1.NW_012012133v1     22648581 2915 +  28977278 I
e rheMac8.chr15             108357019 2024 + 111343173 I
e chlSab2.chr12             102635711 2021 + 108555830 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609   0 -     21860 C
e macFas5.chr15             106268305 2025 + 112612857 I

a score=937.000000
s hg38.chr15_KI270851v1_alt     38884 10 +    263054 aaacctttag
s nomLeu3.chr6               75908475 10 + 121039945 aaacctttag
i nomLeu3.chr6              C 0 I 1523
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e gorGor5.CYUI01000350v1        42114  0 -    142253 C
e colAng1.NW_012115910v1      6779793 657 -   6934359 I
e manLeu1.NW_012104154v1      2130680 2147 +   2144893 I
e cerAty1.NW_012000030v1      1917735 2023 +   8072957 I
e macNem1.NW_012012133v1     22648581 2915 +  28977278 I
e rheMac8.chr15             108357019 2024 + 111343173 I
e chlSab2.chr12             102635711 2021 + 108555830 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609  0 -     21860 C
e macFas5.chr15             106268305 2025 + 112612857 I

a score=0.000000
s hg38.chr15_KI270851v1_alt     38894 310 +    263054 gccgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccatcccggctaaaatggtgaaaccccgtctctactaaaaatacaaaaaattagccaggcgtagtggcgggaacctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagattgcgccactgcactccagcctgggcgacagagcgagactccatctcaaaaaacaaaaaacaaaacaaaacaaaaaa
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e nomLeu3.chr6               75908485 1523 + 121039945 I
e gorGor5.CYUI01000350v1        42114   0 -    142253 C
e colAng1.NW_012115910v1      6779793 657 -   6934359 I
e manLeu1.NW_012104154v1      2130680 2147 +   2144893 I
e cerAty1.NW_012000030v1      1917735 2023 +   8072957 I
e macNem1.NW_012012133v1     22648581 2915 +  28977278 I
e rheMac8.chr15             108357019 2024 + 111343173 I
e chlSab2.chr12             102635711 2021 + 108555830 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609   0 -     21860 C
e macFas5.chr15             106268305 2025 + 112612857 I

a score=135058.000000
s hg38.chr15_KI270851v1_alt     39204 1506 +    263054 aaacctttagacttttcctgtctcacttaaaacaataaccctctaaacttgggaaagaaatccatattcccaggtcttcttataatcttttaccaaaagtacattctacttttcttacatgccttgaatgtggaaatgtttcttcagtagcctcaatacatgttacactgttaactctgtgcaacttctatttttggtgaaaaacctggttagtaggacattttaattatgtaccaagtgtggagcttaggacagacaaaggacagaagtgcagatcaagtctgactttttccagcatagctatgggatgtggctatctccacatatgcccagcacttacctagcagtaacgcaggtaagtgtatagttaagagtcacagtggcgtttgtgaagcatttaggcagcctaataacctttaaattgtacaacgtttcttgcataaattccctttcatgaatcctttcatggcttagaccatctattacatgcttggacaacggtcatttcaacaaccagtcatttcactttaggacaaaaatttaccatacaagatcctttcttatacaaaatctcttttctttttaaccttctttgagcagctagggggctaatttcacatgtcaccgggccttatctagaaagtaatgactccaagctaggtaaattgaacaatttttaaaagttaaagaagcagtttatgatcttaaagcatttagcaaacctaacatcagacccaatttagaccaaatgtctaaattttgaagacattttattttaccaatttttttttt--gagacgaaatctcactctgtcacccgggctgaagtgcagtggcgcagtctcagctcactgcaagctccgcctccagggttcacgtcattctcctgcctcagcctcccgagtagctgggaatacaggtgctcaccaccacgcctggctaatttttttgtatttttagtagatatggggtttcaccgtgttagccaggatggccttgatctcctgacctcatgatctgcccagctcagcctcccaaagtgctgggattacaggtgtgagccactgtgcccagcctattttatcaataattttt-aatctgtctttattaccaaaagattactaaagttaggtgaactaaagggcattagttttaattttactgacaaaatatttgacttaagtgcctacttttctttaaaccaattaattagagcttttatgtaaacatcacacacaaaacatatataaatacatagacagacagaagatccagtagttgtaagatttttcatttgccagttcttaagtttcctagtgggattactagattcaggctggagccctttgaaaaatagggctgggaaagcatgcaatttctagggcctaataagcaggcacagctggaaggcaaaaacagatcccccaaattaagggtgccattttatatgggatcctggattccccccaaaaagagggaaatactacagaagaagctagtgcagtgct
s gorGor5.CYUI01000350v1        42114 1506 -    142253 aaacctttagacttttcctatctcacttaaaaaaataaccctctaaacttgggcaagaaatccatattcccaggtcttcttataatcttttaccaaaagtacattctacttttcttacatgccttgcatgtggaactgtttcttcagtagcctcaatacatgttacactgttaactctgtgcaacttctatttttggtgaaaaacctggttagtaggacattttaattatgtcccaagtgtggagcttaggacagacaaaggacagaagtgcagatcaagtctgactttttccagcatagctatgggatgtggctaactccacatatgcccagcagttacctagcagtaaagcaggtaagtgtatagttaagagtcacagtggcgtttgtgaagcatttaggc-gcctaataacctttaaattgtacaacgtttcttgcataaattccctttcatgaatcctttcatggcttagaccatctattacatgcttggacaacggtcatttcaacaaccagtcatttcactttaggacaaaaatttaccatacaagatcctttcttatacaaaatctcttttctttttaaccttctttgcgcagctagggggctaatttcacatgtcaccgggccttatctagaaagtaatgactccaagctaggtaaattgaacaatttttaaaagttaaagaagcagtttatgatcttaaagcatttagcaaacctaacatcagacccaatttagaccaaatgtctaaattttgaagacactttattttaccaattttttttttttgagacaaagtctcactctgtcacccaggctggagtgcagtggcgcaatctcagctcactgcaagctccgcctcc-gggttcacgtcattctcctgcctcagcctcccgagtagctgg-actacaggtgctcaccaccatgcctggctaatttttttgtatttttagtagatatggggtttcgccatgttagccaggatggtcttgatctcctgacctcatgatctgcccacctcagcctcccaaagtgctgggattacaggtgtgagccactgtgcccagcctattttatcaataattttttaatctgtctttattaccaaaagattactaacgttaggtgaactaaagggcattagttttaattttactgacaaaatatttgatttaagtgcctacttttctttaaaccaattaattagagcttttatgtaaacatcacacacaaaacatatataaatacatagacagacagaagatccagtagttgtaagatttttcatttgccagttcttaagtttcctagtgggattactagattcaggctggagccctttgaaaaatagggctgggaaagcatgcaatttctagggactaataagcaggcacagctggaaggcaaaaacagatctcccaaattaagggtgccattttatatgggatcctggattcccccaaaaaagtgggaaatactacagaagaagctagtgcagtgct
i gorGor5.CYUI01000350v1    C 0 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e nomLeu3.chr6               75908485 1523 + 121039945 I
e colAng1.NW_012115910v1      6779793  657 -   6934359 I
e manLeu1.NW_012104154v1      2130680 2147 +   2144893 I
e cerAty1.NW_012000030v1      1917735 2023 +   8072957 I
e macNem1.NW_012012133v1     22648581 2915 +  28977278 I
e rheMac8.chr15             108357019 2024 + 111343173 I
e chlSab2.chr12             102635711 2021 + 108555830 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609    0 -     21860 C
e macFas5.chr15             106268305 2025 + 112612857 I

a score=1440228.000000
s hg38.chr15_KI270851v1_alt     40710 866 +    263054 tctaccctgcattttattgcaagacaatccaaagccaatcagcccattttgtaatcagcccatcccccatgggattctcatctctcagtgggggatagggatgttttcataccttctaggtggtcaagagtgtgcttctctgatccaagcatgcaaggagccaagtattcctcctaattgccattagcagtcccttatagtgtatttcctatctggttattataaaccatggctaaaagctctcccataatgtgaagcaatttctgatatacccaaaagta-aaaaaaaaaaacaaaaaaagtcaggtaacataatgtaaaattgaaaattgaaccgagacttagattttgagggagatctatcaactttcagctcctggggtttcatgaggaaaatggaggtttttcccagaat-ggggtctgtgatgcctcctctgtttttccctatgagtcccaggctgttagaatttatctaggttctctcaggtgtgctttaagcatggcaagaag-aaaaaatggagaaaatcaattcagaag-aaaagaacttattccagaaagacatgaatctagaagaggaaaaga-taaaggccttttaaatagatatagtttgggtacttttatttatttatttattta--------attttaagatgtggtct----atgttttccaggcttgtctcaaactcctg--ctgaagcaatcctcctgctttggcctcctgaagtactgggattacaggcatgaaaatagatatctagggttaccccacccaaccctggatgtctatttttaattaagccac-ttttaaccatagagctctgctgtttaaaaaaaaaaaaaaaaactttcaaaatcccttattaccaggctctagtg
s gorGor5.CYUI01000350v1        43620 871 -    142253 tctaccctgcattttattgcaagacaatccaaagccaatcagcccattttgtaatcagcccatcccccatgggattctcatctctcagtggggg-tagggatgttttcataccttctaggtggtcaagagtgtgcttctctgatccaagcatgcaaggagccaagtattcctcctaattgccattagcagtcccttatagtgtatttcctatctggttattataaaccatggctaaaagctctcccataatgtgaagcaatttctgatatacccaaaagta-aaaaaaaaaaa---aaaaagtcaggtaacataatgtaaaattgaaaattgaaccgagacttagattttgagggagatctatcaactttcagctcctggggtttcatgaggaaaatggaggtttttcccagaat-ggggtctgtgatgcctcctctgtttttccctatgagtcccaggctgttaggatttatctaggttctctcaggtgtgctttaagcatggcaagaag-aaaaaatggagaaaatcaattcagaag-aaaagaacttattccagaaagacatgaatctagaagaggaaaaga-taaaggccttttaaatagatatagtttgggtacttttatttatttatttatttatttatttaattttaagatgtggtctgactatgttttccaggcttgtctcaaactcctg--ctgaagcaatcctcctgctttggcctcctgaagtactgggattacaggcatgaaaatagatatctagggttaccccacccaaccctggatgtctatttttaattaagccac-ttttaaccatagagctctgctgtttaaaaaaaaaaaaaa---ctttcaaaatctcttattaccaggctctagtg
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108359043 840 + 111343173 tctaccctgtattctattgtaagacaatccaaagccaatcagcccattttgtagtcagcccatcccccatggaattctcatctctcagtcagtg-tagggatgttttcataccttctaggtggacaagagcacacttctctgacccaagcattcaaggagccaagtatccctcctaattgccattagcagtcccttatagtatatttcctatatggctattacaaaccatggctgaaagctctcccataatgtgaagcaatttttgatatacccaaaagtt-aaaa----------aaaaagtcagttaacatgatgt-------aaaattgaaccgagacttagatttcgagggagatctatcaactttcagttcctggggttccatgaggaaaacggagggttttcccagaatgggggtctgtggtgcctcctctgtttttccctatgaatcccaggctgttagaatttatctaggttctctcatgtgggcttcaagagtggcaagaagaaaaaaatggagaaaaacaattcagaagaaaaaaaactttttccagaaagacatgaatcaagaagaggaaaata-taaaggctttttacatagatattgtttggatac-----tttatttatttattta--------tttttgtgatctggtct----atgttttccaggcttgtctcaaactcctgaactcaagcaatcctcctgctttggcctcctgaagtactgggattataggcatgaaaacagatatccagggttacgccacccaaccctggatgtctatttttaactaagcagc-ttttaaccattgaactcttttgttt-----aaaaaaaaa---tctttaaaatctcttattaccagactctagtg
i rheMac8.chr15             I 2024 C 0
s macFas5.chr15             106270330 840 + 112612857 tctaccctgtattctattgtaagacaatccaaagccaatcagcccattttgtagtcagcccatcccccatggaattctcatctctcagtcagtg-tagggatgttttcataccttctaggtggacaagagcacacttctctgacccaagcattcaaggagccaagtatccctcctaattgccattagcagtcccttatagtatatttcctatatggctattacaaaccatggctgaaagctctcccataatgtgaagcaatttttgatatacccaaaagtt-aaaa----------aaaaagtcagttaacatgatgt-------aaaattgaaccgagacttagatttcgagggagatctatcaactttcagctcctggggttccatgaggaaaacggagggttttcccagaatgggggtctgtggtgcctcctctgtttttccttatgaatcccaggctgttagaatttatctaggttctctcatgtgggcttcaagagtggcaagaagaaaaaaatggagaaaaacaattcagaagaaaaaaaactttttccagaaagacatgaatcaagaagaggaaaata-taaaggctttttacatagatattgtttggataC-----TTTAtttatttattta--------tttttgtgatctggtct----atgttttccaggcttgtctcaaactcctgaactcaagcaatcctcctgctttggcctcctgaagtactgggattataggcatgaAAACAGATATCCAGGGTTACGTCACCCAACcctggatgtctatttttaactaagcagc-ttttaaccattgaactcttttgttt-----aaaaaaaat---ctttaaaaatctcttattaccagactctagtg
i macFas5.chr15             I 2025 C 0
s cerAty1.NW_012000030v1      1919758 841 +   8072957 tctaacctgtattctattgtaagacaatccaaagccaatcagcccattttgtagtcagcccatcccccacggaattctcatctctcagtcagtg-tagggatgttttcataccttctaggtggacaagagcacacttctctgacccaagcattcaaggagccaagtatccctcctaattgccattagcagtcccttgtagtggatttcctatctggttatcacaaaccatggctaaaagctctcccataatgtgaagtaatttttgatatacccaaaagtt-aaaa----------aaaaattcagttaacatgatgt-------aaaattgaactgagacttagatttcgagggagatctatcaactttcagtgcctcgggttccatgaggaaaatggagggttttcgcagaatgggggtctgtggtgcctcctctgtttttccctatgaatcccaggctgttagaatttatctaggttctctcatgtgggcttcaagagtggcaagaagaaaaaaatggagaaaaacaattcagaagaaaaaaaactttttccagaaagacatgaatcaagaagaggaaaata-taaaggctttttacatagatGTTGTTTGGATAC-----TTTAtttatttattta--------tttttgtgatctggtct----atgttttccaggcttgtctcaaactcctgaactcaagcaatcctcctgctttggcctcctgaagtactgggattataggcatgaAAACAGATATCCAGGGTTACGGCACCCAACcctggatatctatttttaattaagcagc-ttttaaccatagaactcttttgttt----aaaaaaaaat---ctttaaaaatctcttattaccagactctagtg
i cerAty1.NW_012000030v1    I 2023 C 0
s chlSab2.chr12             102637732 835 + 108555830 tctaccctgtattctattgtaagacaatccaaagccaatcagcccattttgtagtcagcccatcccccatggaattctcatctctcagtcagtg-tagggatgttttcataccttctaggtggacaagagcacaattctctgacccaagcattcaagaagtcaagtatccctcctaattgccattagcagtcccttatagtatatttcctatctggctattacaaaccatggctaaaagctctcccataacgtgaagtaatttttgatatacccaaaagtt-aaaa----------aaaaagtcagttaacatgatgt-------aaaattgaactgagacttagatttcgagggagatctatcaactttcagttcctggggttccataaggaaaacggagatttttcccagaat-gggctctgtggtgcctcctctgttttttcctatgaatcccaggctgttagaatttatctaggttgtctcatgtgggcttcaagagtggcaagaagaaaaaaatggagaaaaacaattcagaag-------actttttccagaaagacatgaatcaacaagaggaaaata-taaaggctttttacatagatattgtttggataC-----TTTAtttatttattta--------tttttgtgatctggtct----atgttttcgaggcttgtctcaaactcctgaactcaagcaatcctcctgctttggcctcctgaagtactgggattatcggcatgaAAACAGATACCCAGGGTTACGGCACCCAACcctggatatctatttttaattaagcagctttttaaccatagaactcttttgttt---aaaaaaaaaat---ctttaaaaatctcttattaccagactctagtg
i chlSab2.chr12             I 2021 C 0
s manLeu1.NW_012104154v1      2132827 843 +   2144893 tctaacctgtattctattgtaagacaaaccaaagccaatcagcccattttgtagtcagcccatcccccacggaattctcatctctcagtcagtg-tagggatgttttcataccttctaggtggacaagagcacacttctctgacccaagcattcaaggagccaagtatccctcctaatttccattagcagtcccttatagtatatttcctatatggctattacaaaccatggctaaaagctctcccataatgtgaagtaatttttgatatacccaaaagttaaaaa----------aaaaagtcagttaacatgatgt-------aaaattgaactgagacttagatttcgagggagatctatcaactttcagtgcctggggttccatgaggaaaatggagggttttcccagaatgggggtctgtggtgtctcctctgtttttccctatgaatcccaggctgttagaatttatctaggttctctcatgtgggcttcaagagtggcaagaagaaaaaaatggagaaaaacaattcagaagaaaaaaaactttttccagaaagacatgaatcaagaagaggaaaatattaaaggctttttacatagatgttgtttggataC-----TTTAtttatttattta--------tttttgtgatctggtct----atgttttccaggcttgtctcaaactcctgaactcaagcaatcctcctgctttggcctcctgaagtactgagattataggcatgaaaacagatatccagggttacggcacccaatcctggatatctatttttaattaagcagc-ttttaaccatagaactcttttgttt----aaaaaaaaat---ctttaaaaatctcttattaccagactctagtg
i manLeu1.NW_012104154v1    I 2147 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e nomLeu3.chr6               75908485 1523 + 121039945 I
e colAng1.NW_012115910v1      6779793 657 -   6934359 I
e macNem1.NW_012012133v1     22648581 2915 +  28977278 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609   0 -     21860 C

a score=1819587.000000
s hg38.chr15_KI270851v1_alt     41576 761 +    263054 aggacaccccacatttctggcttttgaattctataccaggtaacctctcacatgaaattaataagttttaactaaggttataacttaaccatgaactcatgatgtgtttcaaagagatggtaagtagtttttt----------tt--aaacaagagttagaatttccccagggtagttcacagaaaggaaaattcaagacaggaaatcagaaattatccataga-----------------aaggggggaatccctcaaaaaatggca--gttacacaaataacaaacaagaagggaatcattcccaaagccaagaattgaacctggggcagccactgtcaaaagacaaaagccttggttattgagctacatcattcagcaggttctgttgctcttcccagaaggagcctagaggtgccaattttgaccttgcaaaagcttctacctgctcaagataatttttagtgctatgacatgaatccccaaattcctgtccgctgaatggcagacaccaagagaaagtatccccacatggtcacaaggttaagctctcaagggcataaaacgaaaagatggaaactttatatggcactggtcttggggacccccagcaaagtttgtaaatgaccagctgccaggctggcttgaaaggcaggcttataggggtcctaagcccaccttctctcctgtgatacctctctctccattaaagaacaaagcagaaagataaattcttagcacaaagtgctccagatttgctacagcctaagactagtctcacaaatccttttt
s gorGor5.CYUI01000350v1        44491 763 -    142253 aggacaccccacatttctggcttttgaattctataccaggtaacctctcacatgaaattaagaagttttaactaaggttataacttaaccatgaactcatgatgtgtttcaaagagatggtaagtagtttttt----------tt--aaacaagagttagaatttccccagggtagttcacagaaaggaaaattcaagacaggaaatcagaaattatccataga-----------------aaggggggaatccctcaaaaaatggcaaagttacacaaataacaaaccagaagggaatcattcccaaagccaagaactgaacctggggcagccactgtcaaaagacaaaagccttggttattgagctacatcattcagcaggttctgttgctcttcccagaaggagcctagaggtgccaattttgaccttgcaaaagcttctacctgctcaagataatttttagtgctatgacatgaatccctaaattcctgtctgctggatggcagacaccaagagaaagtatccccacatggtcacaaggttaagctctcaaggacataaaacaaaaagagggaaactttatatggcactggtctcagggacccccagcaaagtttgtaaatgaccagctgccaggctggcttgaaaggcaggcttataggggtcctaagcccaccttctctcctgtgatacctctctctccattaaagaacaaaacagaaagataaattcttagcacaaagtgctccagatttgctacaacctaagactagtctcacaaatccttttt
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108359883 777 + 111343173 aggacagccaacatttctggcttttgaattctataccaggtaacctctcacatgaaactaataagttttaactaaggttat-acttaaccatgaactcacaaagtgtttcaaagagatggtaagcagtttttt-ggttttttttt--aaacaagatttagaatttccccagggtagttcagagaaaggaaaattcaagacaggaaatcagatgctatccatggg-----------cggggggtgggggagaatcctcaaaaaatggcaaagttacacaaataacaaaccagaaaggaatcatttccaaagccaagaactgaaccaggggcagccactgtcaaaagacaaaagccttggttactgcattagagcattcagcaggttctgttgctctttctagaagtagcctagagtagccaatttcgagcttgcaaagactttaaactgctcaagataatttttagggctatgacatgaatccccaaattcctgtctgttggatggcagagaccaagagaaagtatccccacatggtcacaaggttaaggtctcaagcacataaagcaaaaagagagaaacatcatatggcactgatctcagggacccccagcaaagtttataaattaccagctgctaggctggcttaaaaagcaggcttataggggtcctaagcccaccttctctcctgtgatacctctctctccattaaagaacaaaacagaaagacaaattcttagcacaaagtgctccagatttgctacagcctaagactagtctcacaaatccttttt
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106271170 777 + 112612857 aggacagccaacatttctggcttttgaattctataccaggtaacctctcacatgaaactaataagttttaactaaggttat-acttaaccatgaactcacaaagtgtttcaaagagatggtaagcagtttttt-gtttttttttt--aaacaagatttagaatttccccagggtagttcagagaaaggaaaattcaagacaggaaatcagatgctatccatggg-----------cggggggtgggggagaatcctcaaaaaatggcaaagttacacaaataacaaaccagaaaggaatcatttccaaagccaagaactgaaccaggggcagccactgtcaaaagacaaaagccttggttactgcattagagcattcagcaggttctgttgctctttctagaagtagcctagagtagccaatttcgagcttgcaaagactttaaactgctcaagataatttttagggctatgacatgaatccccaaattcctgtctgttggatggcagagaccaagagaaagtatccccacatggtcacaaggttaaggtctcaagcacataaagcaaaaagagagaaacatcatatggcactggtctcagggacccccagcaaagtttataaattaccagctgctaggctggcttaaaaagcaggcttaaaggggtcctaagcccaccttctctcctgtgatacctctctctccattaaagaacaaaacagaaagacaaattcttagcacaaagtgctccagatttgctacagcctaagactagtctcacaaatccttttt
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22651496 777 +  28977278 aggacagccaacatttctggcttttgaattctataccaggtaacctctcacatgaaactaataagttttaactaaggttat-acttaaccatgaactcacaaagtgtttcaaagagatggtaagcagtttttt-gtttttttttt--aaacaagatttagaatttccccagggtagttcagagaaaggaaaattcgagacaggaaatcagatgctatccatggg-----------cggggggtgggggagaatcctcaaaaaatggcaaagttacacaaataacaaaccagaaaggaatcatttccaaagccaagaactgaaccaggggcagccactgtcaaaagacaaaagccttggttactgcattagagcattcagcaggttctgttgctctttctagaagtagcctagagtagccaatttcgagcttgcaaagactttaaactgctcaagataatttttagggctatgacatgaatccccaaattcctgtctgttggatggcagagaccaagagaaagtatccccacatggtcacaaggttaaggtctcaagcacataaagcaaaaagagagaaacatcatatggcactgatctcagggacccccagcaaagtttataaattaccagctgctaggctggcttaaaaagcaggcttaaaggggtcctaagcccaccttctctcctgtgatacctctctctccattaaagaacaaaacagaaagacaaattcttagcacaaagtgctccagatttgctacagcctaagactagtctcacaaatccttttt
i macNem1.NW_012012133v1    I 2915 C 0
s cerAty1.NW_012000030v1      1920599 778 +   8072957 aggacagccaacatttctggcttttgaattctataccaggtaacctctcacatgaaactaataagttttaactaaggttat-acttaaccatgaactcacaaaacgtttgaaagagatggtaagcagtttttt-gtttttttttttaaaacaagatttagaattttcccagggtagttcagagaaaggaaaattcaagacaggaaatcagatgctatccatggg-----------cggggggtgggggggaatcctcaaaaaatggcaaagttacacaaataacaaaccagaaaggaatcatttccaaagccaagaactgaaccaggggcagccactgtcaaaagacaaaagccttggttactgcattagagcattcagcaggttctcttgctctttccagaagtagcctagagtagccaatttcgagcttgcaaagactttaaactgctcaagataatttttagggctatgacatgaatccccaaattcctgtctgttggatggcagagaccaagagaaagtatccccacatggtcacaaggttaaggtctcaagcacataacgcaaaaagagagaaacatcatatggcactggtctcagggacccccagcaac-tttgtaaatgaccagctgccaggctggcttgaaaagcaggcttatagtggtcctaagcccatcttctctcctgtgatacctctctctccattaaagaacaaaatgaaaagataaattcttagcaaaaattgctccagatttgctacagcctaagactagtctcacaaatccttttt
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102638567 788 + 108555830 aggacagccaacatttctggcttttgaattctataccaggtaacctctcacatgaaactaat--gttttaactaaggttat-acttaaccatgaactcacaaagtgtttcaaagagatggtaagcagttttttggtttttttttt-aaaacaagatttagaatttccccagggtagttcagagacaggaaaattcaagacaggaaatcagatgctatccatgggggcgggggggtggggggggggggggaaaccctcaaaaaatggcaaagttacacaaataacaaaccagaaaggaatcatttccaaagccaagaactgaaccaggggctgccactgtcaaaagacaaaagccttggttactgcattacagcattcagcaggttctgttgctcttcccagaagtagcctagagtagccaatttcgagcttgctaagactttaaactgctcaagataatttttagggctatgacgtgaatccccaaattcctgtctgttggatggcagagaccaagagaaagtatccccacatggtcacaaggttaagctctcaagcacataaagcaaaaagagagaaacatcatatggcgctggtcttagggacccccagcaaagtttgtaaatgaccagctgctaggctggctgaaaaagcaggcttataggggtcctaagcccaccttctctcctgtgatacggctctctccattaaagaacaaaacagaaagacaaattcttagtacaaagcgctccagatttgctacagcctaagactagtctcatatatccttttt
i chlSab2.chr12             C 0 I 69
s manLeu1.NW_012104154v1      2133670 778 +   2144893 aggacagccaacatttctggcttttgaattctataccaggtaacccctcacatgaaactaataagttttaactaaggttat-acttaaccatgaactcacaaaacgtttgaaagagatggtaagcagtttttt-gtttttttttt-aaaacaagatttagaatttccccagggtagttcagagaaaggaaaattcaagacaggaaatcagatgctatccatggg-----------cggggggtggggggaaatcctcaaaaaatggcaaagttacacaaataacaaaccagaaaggaatcatttccaaagccaagaactgaaccaggggcagccactgtcaaaagacaaaagccttggttactgcattagagcattcagcaggttctcttgctctttccagaagtagcctagagtagccaatttcgagcttgcaaagactttaaactgctcaagataatttttagggctatgacatgaatccccaaattcctgtcggttggatggcagagaccaagagaaagtatccccacatggtcacaaggttaaggtctcaagcacataaagcaaaaagagagaaacatcatatggcactggtctcagggacccccagcaaagtttataaattaccagctgctaggctggcttaaaaagcaggcttataggggtcctaagcccaccttctctcctgtgatacctctctctccattaaagaacaaaacagaaagacaaattcttagcacaaagtgctccagatttgctacagcctaagactagtctcacaaatccttttt
i manLeu1.NW_012104154v1    C 0 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e nomLeu3.chr6               75908485 1523 + 121039945 I
e colAng1.NW_012115910v1      6779793 657 -   6934359 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609   0 -     21860 C

a score=89020.000000
s hg38.chr15_KI270851v1_alt     42337 66 +    263054 tctatttgtagaaaagagaaaacagaggagagaagacaaacagtgatatttaccatttgcattcac
s gorGor5.CYUI01000350v1        45254 66 -    142253 tcaatttgtagaaaagagaaaacagaggagagaagacaaacagtgatatttaccatttgcattcac
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108360660 58 + 111343173 tctattaatc--------aaacctttgcagaggagacaaacagtgatgtttaccatttgcattcaC
i rheMac8.chr15             C 0 I 10
s macFas5.chr15             106271947 58 + 112612857 tctattaatc--------aaacctttgcagaggagacaaacagtgatgtttaccatttgcattcac
i macFas5.chr15             C 0 I 1
s macNem1.NW_012012133v1     22652273 58 +  28977278 tctattaatc--------aaacctttgcagaggagacaaacagtgatgtttaccatttgcattcac
i macNem1.NW_012012133v1    C 0 I 10
s cerAty1.NW_012000030v1      1921377 58 +   8072957 tctattaatc--------aaacctttgcagaggagacaaacagtgatgtttaccatttgcattcaC
i cerAty1.NW_012000030v1    C 0 I 1
s manLeu1.NW_012104154v1      2134448 58 +   2144893 tctattaatc--------aaacctttgcagaggagacaaacagtgatgtttaccatttgcattcaC
i manLeu1.NW_012104154v1    C 0 I 1
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e nomLeu3.chr6               75908485 1523 + 121039945 I
e colAng1.NW_012115910v1      6779793 657 -   6934359 I
e chlSab2.chr12             102639355 69 + 108555830 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609  0 -     21860 C

a score=831.000000
s hg38.chr15_KI270851v1_alt     42403 10 +    263054 acgcacacac
s gorGor5.CYUI01000350v1        45320 10 -    142253 atgcacacac
i gorGor5.CYUI01000350v1    C 0 C 0
s macFas5.chr15             106272006  9 + 112612857 accccccca-
i macFas5.chr15             I 1 C 0
s cerAty1.NW_012000030v1      1921436  9 +   8072957 AACCCCCCA-
i cerAty1.NW_012000030v1    I 1 C 0
s manLeu1.NW_012104154v1      2134507  9 +   2144893 AACCCCCCA-
i manLeu1.NW_012104154v1    I 1 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e nomLeu3.chr6               75908485 1523 + 121039945 I
e colAng1.NW_012115910v1      6779793 657 -   6934359 I
e macNem1.NW_012012133v1     22652331 10 +  28977278 I
e rheMac8.chr15             108360718 10 + 111343173 I
e chlSab2.chr12             102639355 69 + 108555830 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609  0 -     21860 C

a score=1911.000000
s hg38.chr15_KI270851v1_alt     42413 1 +    263054 a
s gorGor5.CYUI01000350v1        45330 1 -    142253 a
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108360728 1 + 111343173 A
i rheMac8.chr15             I 10 C 0
s macFas5.chr15             106272015 1 + 112612857 a
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22652341 1 +  28977278 a
i macNem1.NW_012012133v1    I 10 C 0
s cerAty1.NW_012000030v1      1921445 1 +   8072957 A
i cerAty1.NW_012000030v1    C 0 C 0
s manLeu1.NW_012104154v1      2134516 1 +   2144893 A
i manLeu1.NW_012104154v1    C 0 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e nomLeu3.chr6               75908485 1523 + 121039945 I
e colAng1.NW_012115910v1      6779793 657 -   6934359 I
e chlSab2.chr12             102639355 69 + 108555830 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609 0 -     21860 C

a score=2605626.000000
s hg38.chr15_KI270851v1_alt     42414 1093 +    263054 caaacacacagagggagagggagggagagagacag------------------------------ggagagagagagaaatatgagaaacttggttggtaagaatttcttacccttttt-tc-gccagcataccaggtttctgggttccctttctctgcagctttcagaagaacagagcagctttgatgaccttgctcagtgtaacatagctatgggagccaagttccattacaaaataaaattatgcttttctgtttgatagaaccataggcataagcttctcaattttgcaagatgctgctcaacaggctgcatggggaatcaaattaatattttccatcccagccaaagcaaaatacatgtagcaaaacagacgcaagtcactttgttcagcaccagtgttgacctggcaaggctcaaactttctcctgttggcccctgttatctttgatccacaccaggtgggaatggatgatctccaaatggtaattcagtgtgtaacctctaggcaagacaacaaacctgacaaaaacaagcaatggggaaaggatttcctatttaataaatggtgt---gaaaactggctagctatacacagaaaactgaaactggatcttttccttacaccctatacaaaaactaactcaagataaagtaaagtcttaaatgtaaaagccaaaactataaaaaccctagaaaaaaatgtaggc-aataccattcaggtcatagtcatgggcatatattttatgttgaaatcgccaaaagcaattgtaataaaagcaaaaattgacaaatgggaactaattaaactaaagagtttc-acgcagcaaa-gaaactatcatcagagtgaacagacaacctacagaatgggagaaaatttttgcaatgtatccatctgacaaaggtccaatatccagaatctacagggaatttaaggaaatttacaagaagaaaacaaaagaccccattaaaaagtgggcaaaggacatgaacaaacacttctcaaaagaagacatagatggagccaacaaacataaggaaaaaagctcaacatcactgattgttagacaaatggaaatcaaaaccacaatgagataccatcacatgccagtcaaaatggcaattat
s gorGor5.CYUI01000350v1        45331 1096 -    142253 caaacacacagagggagagggagggagagagacag------------------------------ggagagagagagaaatatgagaaacttggttggtaagaatttcttacccttttt-tttgccagcataccaggtttctgggttccctttctctgcagctttcagaagaacagagcagctttgatgaccttgctcagtgtaacatagctatgggagccaagttccattacaaaataaaattatccttttctctttgatggaaccataggcataagcttctcaattttgcaagatgctgctcaacaggctgcatggggaatcaaattaatattttccatcccagccaaagcaaaatacatgtagcaaaacagacacaagtcactttgttcagcaccagtgttgacctggcaaggctcaaactttctcctgttggcccctgttatctttgatccacaccaggtgggaatggatgatctccaaatggtaattcagtgtgtaacctctaggcaa-Acaacaaacctgacaaaaacaagcaatggggaaaggatttcctatttaataaatggtgttatgaaaactggctagctatacacagaaaactgaaactggatcttttccttacaccctatacaaaaactaactcaagataaagtaaagtcttaaatgtaaaagccaaaactataaaaaccctagaaaaaaatgtaggc-aataccattcaggtcataggcatgggcatatattttatgttgaaatccccaaaagcaattgtaacaaaagcaaaaattgacaaatgggaactaattaaactaaaaagtttc-acgcagcaaa-gaaactatcatcagagtgaacagacaacctacagaatgggagaaaatttttgcaatgtatccatctgacaaaggtccaatatccagaatctacagggaatttaaggaaatttacaagaagaaaacaaaagaccccattaaaaagtgggcaaaggacatgaacaaacacttctcaaaagaagacatagatgcagccaagaaacatgaggaaaaaagctcaacatcactgattgttagacaaatggaaatcaaaaccacaatgagataccatcacatgccagtcaaaatggcaattat
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108360729 1128 + 111343173 CAAACACACagagggagaaggagagagagagagagaggaagagaaagagagagagagaaagagagagagagagagagagaga-gagagagagaattgctaagaatttcttaccctttttgtttgccagcataccaggtttctggattccctttctctgcagctttcagaagaacagagcagctttgacgaccctgctcactgtattacagctatgggagccaagccccattacaaaataaaatcatccttttctgtttgatggaaccataggcaaaagcttctcaattttgcaagatactgcccaacaggctgcatagggaatcaaatcaatattttccatcccagccaaagcaaaatacgtataacaaaac-gacacaagttaccttgttcagcaccaattttgacctggcaaggctcaaactttctcctgttggcccctgttatctttgatccactccaggtggggagggatgactttcaaatggtaattcaatgtgtagtctctgagcaagAcaacaaacctgacaaaaacaagcaatggggaaaggatttcctatttaatacatggtgttgtgagaactggctagttatacacagaaaattgaaactggatcttttccttacgccctatacaaaaactaactcaagataaattaaagtcttaaatgtaaaagccaaaactataaaaacgctagaaaaaaatctaggc-aataccattcaggtcatagacatgggaaaatattttatgttgaaatcgtcaaaagcaattgtaacaaaagcaaaaattgacaaatgggacctaattaaactaaagagcttctgcacagcaaaggaaactatcatcagagtgaacaggcaacctacagaatgggagaaaaattttgcaatctatccatctgacaaaggtccaatatccataatctgtaaggaacttaaggaagtttacaagaagaaaacaaacaaccccattaaaaagtgggcaaaggacatgaacaaacacttctcaaaagaagacatagatgtggccaacaaacatatggaaaatagctcaacatcactgatcgttagaaaaatgggaatcaaaaccagaatgagataccatcacatgctagtcagaatggcaattat
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106272016 1128 + 112612857 caaacacacagagggagaaggagagagagagagagaggaagagaaagagagagagagagagagaaagagagagagagaaaga-gagagagagaattgctaagaatttcttaccctttttgtttgccagcataccaggtttctggattccctttctctgcagctttcagaagaacagagcagctttgatgaccctgctcactgtattacagctatgggagccaagccccattacaaaataaaatcatccttttctgtttgatggaaccataggcaaaagcttctcaattttgcaagatactgcccaacaggctgcatagggaatcaaatcaatattttccatcccagccaaagcaaaatacgtataacaaaac-gacacaagttaccttgttcagcaccaattttgacctggcaaggctcaaactttctcctgttggcccctgttatctttgatccactccaggtggggagggatgactttcaaatggtaattcaatgtgtaatctctgagcaagAcaacaaacctgacaaaaacaagcaatggggaaaggatttcctatttaatacatggtgttgtgagaactggctagttatacacagaaaattgaaactggaccttttccttacgccctatacaaaaactaactcaagataaattaaagtcttaaatgtaaaagccaaaactataaaaacgctagaaaaaaatctaggc-aataccattcaggtcatagacatgggaaaatattttatgttgaaatcgtcaaaagcaattgtaacaaaagcaaaaattgacaaatgggacctaattaaactaaagagcttctgcacagcaaaggaaactatcatcagagtgaacaggcaacctacagaatgggagaaaaattttgcaatctatccatctgacaaaggtccaatatccataatctgtaaggaacttaaggaagtttacaagaagaaaacaaacaaccccattaaaaagtgggcaaaggacatgaacaaacacttctcaaaagaagacatagatgtggccaacaaacatatggaaaatagctcaacatcactaatcgttagagaaatgggaatcaaaaccagaatgagataccatcacatgctagtcagaatggcaattat
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22652342 1111 +  28977278 caaacacacagagggagaaggagagagagagagagaggaagagaaag------------------agagagagagagaaaga-gagagagagaattgctaagaatttcttaccctttttgtttgccaacataccaggtttctggattccctttctctgcagctttcagaagaacagagcagctttgatgaccctgctcactgtattacagctatgggagccaagccccattacaaaataaaatcatccttttctgtttgatggaaccataggcaaaagcttctcaattttgcaagatactgcccaacaggctgcatagggaatcaaatcaatattttccatcccagccaaagcaaaatacgtataacaaaac-gacacaagttaccttgttcagcaccaattttgacctggcaaggctcaaactttctcctgttggcccctgttatctttgatccactccaggtggggagggatgactttcaaatggtaattcaatgtgtaatctctaggcaagAAgacaaacctgacaaaaacaagcaatggggaaaggatttcctatttaatacatggtgttgtgagaactggctagttatacacagaaaattgaaactggatcttttccttacaccctataaaaaaactaactcaagataaattaaagtcttaaatgtaaaagccaaaactataaaaacgctagaaaaaaatctaggcaaataccattcaggtcatagacatgggaaaatattttatgttgaaatcgtcaaaagcaattgtaacaaaagcaaaaattgacaaatgggaccttattaaactaaagagcttctgcacagcaaaggaaactatcatcagagtgaacaggcaacctacagaatgggagaaaaattttgcaatctatccatctgacaaaggtccaatatccataatctgtaaggaacttaaggaagtttacaagaagaaaacaaacaaccccattaaaaagtgggcaaaggacatgaacaaacacttctcaaaagaagacatagatgtggccaacaaacatatggaaaatagctcaacatcactgatcgttagaaaaatgggaatcaaaaccagaatgagataccatcacatgctagtcacaatggcaattat
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1921446 1116 +   8072957 CAAACACAATgagggagaaggagagagagagagagaggaagagaaagagagag------------agagagagagagaaaga-gagagagagaattggtaagaatttcttaccctttttgtttgccagcataccaggtttctgggttccctttctctgcagctttcagaagaacagagcagctttgatgaccctgctcactgtattacagctatgggagccaagccccattacaaaataaaatcatccttttctgtttgatggaaccataggcaaaagcttctcaattttgcaagatactgctcaacaggctgcatagggaatcaaatcaatattttccatcccagccaaagcaaaatacgtataacaaaac-gacacaagttaccttgttcagcaccaattttgacctggcaaggctcaaactttctcctgttggcccctgttatctttgatccactccaggtggggagggatgactttcaaatggtaattcaatgtgtaatctctgagcaagAcaacaaacctgacaaaaacaagcaatggggaaaggatttcctatttaataaatggtgttgtgagaactggctagctatacacagaaaattgaaactggatcttttccttacaccctataaaaaaactaactcaagataaattaaagtcttaaatgtaaaagccaaaactataaaaacgctagaaaaaaatctaggc-aatatcattcaggtcatagacatgggaaaatattttatgttgaaatcgtcaaaagcaattgtaacaaaagcaaaaattgacaaatgggacctaattaaactaaagagcttctgcacagtaaaagaaactatcatcagagtgaacaagcaacctacagaatgggagaaaaattttgcaatctatccatctgacaaaggtccaatatccataatctgtaaggaacttaaggaagtttacaagaagaaaacaaacaaccccattaaaaagtgggcagaggacatgaacaaacacttctcaaaagaagacatagatgtggccaacaaacatatggaaaatagctcaacatcactgatcgttagagaaatgggaatcaaaaccagaatgagataccatcacatgctagtcagaatggcaattat
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102639424 1076 + 108555830 cacacacacagagggagaag----------------------------------------------------gagagaaaga-gagagagagaattggtaagaatttcttaccctttttgtttgccagcataccaggtttctgggttccctttctctgcagctttcagaagaacagagcagctttgatgaccctgctcactgtattacagctatgggagccaagccccattacaaaataaaatcatccttttctgtttgatggaaccataggcaaaagcttctcaattttgcaagatactgcccaacaggctgcatggggaatcaaatcaatattttccatcccagccaaagcaaaatacgtataacaaaat-gacacaagtcaccttgttcagcaccaatattgacctggcaaggcacaaactttctcctgttggcccctgttatctttgatccactccaggtgaggagggatgactttcaaatggtaattcaatgtgtaatctctgagcaagacaacaaacctgacaaaaacaagcaatggggaaaggatttcctatttaataaatggtgttgtgagaactggctagctattcacagaaaattgaaactggatcttttccttacaccctacacaaaaactaactcaagataaattaaagtcttaaatgtaaaagccaaaactataaaaacgctagaaaaaaatctaggc-aataccattcaggtcatagacatgggaaaatattttatgttgaaatcgtcaaaagcaattgtaacaaaagcaaaaattcacaaatgggacctaattaaactaaagagcttctgcacagcaaaagaaactatcatcagagtgaacaggcaacctacagaatggcagagaaattttgcaatctatccatctgacaaaggtccaatatccataatctgtaaggaacttaaggaagtttacaagaagaaaacaaacaaccccattaaaaactgggcaaaggacatgaacaaacacttctcaaaagaagacatagatgtggccaacaaacatatggaaaatagctcaacatcactgaccgttagagaaatgggaatcaaaaccagaatgagataccatcacatgctagtcggaatggcaattat
i chlSab2.chr12             I 69 C 0
s manLeu1.NW_012104154v1      2134517 1121 +   2144893 CAAACACAATgagggagaaggagagagagagagagaggaagagaaagagagagagag--------agagagagagagaaaga-gagagagagaattggtaagaatttcttaccctttttgtttgccagcataccaggtttctgggttccctttctctgcagctttcagaagaacagagcagctttgatgaccctgctcactgtattacagctatgggagccaagccccattacaaaataaaatcatccttttctgtttgatggaaccataggcaaaagcttctcaattttgcaagatgctgcccaacaggcttcattgggaatcaagtcaatattttccttcccagcccaagcaaaatacatgtaacaaaacagacacaagtcactttgttcagcaccaatattcagctgacaaggctcaaactttctcctgttggcccctgttatctttgatccactccaggtggggagggatgacctccaaatggtaattcaatgtgtaatctctgagcaagAcaacaaacctgacaaaaacaagcaatggggaaaggatttcctatttaataaatggtgttgtgagaactggctagctatacacagaaaattgaaactggatcttttccttacaccctataaaaaaactaactcaagataaattaaagtcttaaatgtaaaagccaaaactataaaaacgctaggaaaaaatctaggc-aataccattcaggtcatagacatgggaaaatattttatgttgaaatcgtcaaaagcaattgtaacaaaagcaaaaattgacaaacgggacctaattaaactaaagagcttctgcacagcaaaagaaactatcatcagagtgaacaagcaacctacagaatgggagaaaaattttgcaatctatccatctgacaaaggtccaatatccataatctgtaaggaacttaaggaagtttacaagaagaaaacaaacaaccccattaaaaagtgggcagaggacatgaacaaacacttctcaaaagaagacatagatgtggccaacaaacatatggaaaatagctcaacatcactgatcgttagagaaatgggaatcaaaaccagaatgagataccatcacatgctagtcagaatggcaattat
i manLeu1.NW_012104154v1    C 0 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e nomLeu3.chr6               75908485 1523 + 121039945 I
e colAng1.NW_012115910v1      6779793  657 -   6934359 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609    0 -     21860 C

a score=306571.000000
s hg38.chr15_KI270851v1_alt     43507 102 +    263054 taaaaagtcaaga-aacaactgatgctggtgaggttggggagaaatagaaacaattttacactgttggcaggaatgtaaattagttcaaccattgtggcagac
s gorGor5.CYUI01000350v1        46427 102 -    142253 taaaaagtcaaga-aacaactgatgctggtgaggttggggagaaatagaaacaattttacactgttggcaggaatgtaaattagttcaaccattgtggcagac
i gorGor5.CYUI01000350v1    C 0 C 0
s rheMac8.chr15             108361857 101 + 111343173 taaaaagtcaaga-aa-aactgatgctggtgaggttggggagaaatagaaacacttttacgctgttggcaggaatgtaaattagttcaaccattgtgggagac
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106273144 101 + 112612857 taaaaagtcaaga-aa-aactgatgctggtgaggttggggagaaatagaaacacttttacgctgttggcaggaatgtaaattagttcaaccattgtgggagac
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22653453 101 +  28977278 taaaaagtcaaga-aa-aactgatgctggtgaggttggggagaaatagaaacacttttacgctgttggcaggaatgtaaattagttcaaccattgtgggagac
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1922562 101 +   8072957 taaaaagtcaaga-aa-aactgatgctggtgaggttggggagaaatagaaacacttttacgctgttgccaggaatgtaaattagttcaaccattgtgggagac
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102640500 101 + 108555830 taaaaagtcaaga-aa-aactgatactggtgaggttggggagaaatagaaacacttttacgctgttggcaggaacgtaaattagttcaaccattgtgggagac
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2135638 101 +   2144893 taaaaagtcaaga-aa-aactgatgctggtgaggttggggagaaatagaaacgcttttacgctgttgccaggaatgtaaattagttcaaccattgtgggagac
i manLeu1.NW_012104154v1    C 0 C 0
s colAng1.NW_012115910v1      6780450 102 -   6934359 taaaaaggcaagacac-aactgatgctggtgagtttgaggagaaacagaaatgcttttacactgttggcaggaatgtaaattagttcagacatcgtggaagac
i colAng1.NW_012115910v1    I 657 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e nomLeu3.chr6               75908485 1523 + 121039945 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609   0 -     21860 C

a score=6339202.000000
s hg38.chr15_KI270851v1_alt     43609 1727 +    263054 attatggcgattcctcaaagatttagaatgggaaatactatttgacccagcaatcccattactgggtatgtacccaaa-gaatataaattattctgttataaagatgaatgcacttatatattcattgcagcactattcacagaagcaaagacatggaatcaacccaaatgcccatcagtgatagactggataaagaaaatgtggtgcatagacaacatggaatattatgcagccataaaaaagaatgagattatgtcctttgcagggacatgaatgaagctggaagccattatcctcagcaaactaacacaggaacagaaaaccaaacaccacacgttctcacttataagtgggagctgaccaaagggaacacatgcacacaggtaggggaacaacacactgtggggcctgtcagaagcaggagagagcatcaggaaaaataactaatgcatacggggcttaatacctatgtgatgggttgataggtacagcaaaccaccatggcacacatttacctatgtaacaaacctgcacatcctgcacatgtaccccggaagttaaaataaaat--------aataaaaaatacacaaaagatgtgaacagacatttctcaaaagaagacatatgaatggcaaacaggtatatgaaaaggtgctcaacatcaatgatatcagagaaaggtaatcaaaactacaaggagatctcatctcgccccagttaaaatggc-tttcatccaaaagacagacaatggcaaatgctggcgaggatgtgaagggaaccctcatacactgttggtggaaatgtgagtcagtacaacttctatggagaacagctaggaggttcctcaaaaactaaaactagagctacctcatgatccagcaatcccactgctgggtacacacccagaagaaaggaaatcagtatattgaagggatacttgcactcccatgttccttctagcactgttcacaatagccaagattaggaatcaacctagtgagtgtccatcaacagatgaaaggataaagaaaaggtggtacatataagcagtggagtgctcttcagccataaaaaaacaatgagagcctatcatttgcaatagcatggatagaactggaggtcattaagtgaaatcaggcaaagaaagactgacaaacatcacatgttctctctt----gtgagagctaaaaattaaacagtcaaactcatggagatacagagtagaaggatggttactagaggctgggaaggcacagggggagagagacggggatggttaatggataaagaaggtaattagaaagaatgaataaaactgggtatttgtagtatttgacagcaatagaatgcctatagtcaataataatttaattgttcatttaaaaaataaggagtataattggatggtttgtaacacaaaggaaaaaggcttgaggtgatggacaccccatttaccatgctgtgattattacacactgcatgcc---tgtatgaaagtatctcatgtgccccattaacatatacacctactgtgtgcccacaaaaataaaTATTAAACTTTTAAAAAACTATGAAAATTGTAATCAAAATTCACAACGATCAATAAG-TAC-AAAAAATGTAAATTCTATGTCTGAGTTGATGCAGGGCAAGAACATATTAAGGGGGAAAGTTAGAACTGCAAACAAATGAGTTCCTAAGAGCAAGAAACTGGAGAAATAACAGAAACTCCAGGGAGAAG
s gorGor5.CYUI01000350v1        46529 1727 -    142253 attgtggcgattcctcaaagatttagaatgggaaatactatttgacccagcaatcccattactgggtatgtacccaaa-gaatataaattattctgttataaagatgaatgcacttatatattcattgcagcactattcacagaagcaaagacatggaatcaacccaaacgcccatcaatgatagactggataaagaaaatgtggtgcatagacaacatggaatactatgcagccataaaaaagaacgagattatgtcctttgcagggatatgaatgaagctggaagccattatcctcagcaaactaacacaggaacagaaaaccaaacaccacacgttctcacttataagtgggagctgaccaaagggaacacatgcacacaggtaggg-aacaacacactgtggggcctgtcagaagcaggagagagcatcaggaaaaatagctaatgcataccgggcttaatacctatgtgatgggttgataggtacagcaaaccaccatggcacacatttacctatgtaacaaacctgcacatcttgcacatgtaccccggaagttaaaataata---------aataaaaaatacacaaaagatgtgaacagacatttctcaaaagaagacatatgaatggcaaacaggtgtatggaaaggtgctcaacatcaatgatatcagagaaaggtaatcaaaactacaaggagatctcatctcaccccagttaaaatggc-tttcatccaaaagacagacaatggcaaatgctggcaaggatgtgaagggaaccctcatacactgttggtggaaatgtgagtcagtacaacctctatggagaacagttaggaggttcctcaaaaactaaaactagagctaccacatgatccagcaatcccactgctgggtacacacccagaagaaaggaaatcagtatattgaagggatacttgcactcccatgttccttctagcactgttcacaatagccaagattaggaatcaacctagcgagtgtccatcaacagatgaaaggataaagaaaaggtggtacatataagcagtggagtgctcttcagccataaaaaaacaatgagagcctatcatttgcaatagcatggatagaactggaggtcattaagtgaaatcaggcaaagaaagactaacaaacatcacatgttctctcttacttgtgagagctaaaaattaaacagtcaaactcatggagatacagagtagaaggatgcttactagaggctgggaaggcgcagggg-agagagacggggatggttaatggataaagaaggtaattagaaagaatgaataaaactgggtatttgtagtatttgacagcaatagaatgcctatagtcaataataatttaattgttcatttaaaaaataaagagtataattggatggtttgtaacacaaaggaaaacggcttgaggtgatggacaccccatttaccatgctgtgattattacacactgcatgcc---tgtatgaaagtatctcatgtgcccaattaacatatacacctactgtgtgcccacaaaaataaaTATTAAACTTTTAAAAAACTATGAAAATTGTAGTCAAAATTCACAATGATCAATAAG-TAC-AAAAAATGTAAGTTCCATGTCTGAGTTGATGCAGGGCAAGAACATATTAAGGGG-AAAGTTAGAACTGCAAACAAATGAGTTCCTAAGAGCAAGAAACTGGAGAAATAACAGAAACTCCAGGGAGAAG
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75910008 1722 + 121039945 atcgtggtgattcctcaaagatttagaatgggaaatatcatttgacccagcaatcccattactgggtatatacccaaaggaatataaattattctgttataaagatgaatgcacttatatattcattgcagcactactcacagtagcaaagacatggaatcaacccaaatgcccatcaatgatagactggataaagaaaatgtggtgcatagaccacatggaatactatgcagccataaaaatgaatgagattatgtcctttgcagcgacatgaatgaagctggaagccattatcctcagcaaactaacacaggaacagaaaaccaaacaccacacgttctcacttataagtgggagctgaccaaagggaacacatgcaaacaggtaggggaacaacacac--tcgggcctgtcagaagcaggagagagcatcagtaaaaacagctaatgcataccgggcttaatacctatgtgatgggttgataggtgcagcaaaccaccatggcacacatttacctatgtaacaaacctgcacatcctgcacatgtaccccagaagttaaaataaaataataaaaaaataaaaaatacacaaaagatgtgaacagagatttctcaaaagaagacatatgaatggcaaacaggtatatgaaaaggtgctcaacatcactgatatcagagaaaggcaatcaaaactacaaggagatctcatctcaccccagttaaaatggc-tttcatccaaacgacagacaatgacaaatgctggcaaggatgtaaagggaaccctcatacactgctggtggaaatgtaagtcagtgcaacttctatggagaacagttaggaggttcctgaaaaactaaaactagagctaccatatgatccagcaatcccactgctgggtacacacccagaagaaaggaaatcagtatattgaagggatacttgcactcccatgttccttctagcactgttcacaatagccaagatttagaagcaacctggttagtgtccatcaacagatgaaaggataaagaaaaggtggtacatatacacagtggagtgctcttcagccataaaaaaacaatgagagcctatcatttgcaatagcatggatggaactggaggtcattaagtgaaatcaggcaaagaaag----acaaacgtcacatgttctctcttatttgtgagagctaaaaattaaa----caaactcatggagatacagagtagaaggatggttactagaggctggggaggcgcagggagacagagatggggatggttaatggataaagaaggtaattagaaagaatgaataaaactgggtatttgtagtatttgacagcaatagaatgcctatagtcaataataatttaattgtacatttaaaaaataaatagtataattggatggtttgtaacacaaaggaaaaaggcttgaggtgatgggcaccccacttaccatgctgtgattattacac----caggccaagggtatgaaagtatctcatgtgccccattaacatatacactttct-cgtgcccacaaaaat-AATATTAAACTTTTAAAAAATTATGAAAATTGTAATCAAAATTCACAATGATCAATAAG-TACAAAAAAATGTAAGTTCTATGTCTGAGTTGATAT------AGAACATATTAAGGGGGAAAGTTAGAACTGCAAACAAATGAGATCCTAAGAGCAAGAAACTGGAGAAATAACAGAAACTCCAGGGAGAAG
i nomLeu3.chr6              I 1523 C 0
s rheMac8.chr15             108361958 1729 + 111343173 attgtggcgattcctcaaagatttagaacagaaaatgccatttgacccagcaatcccattactgggtatatacccaaaggaatataaatcattctgttataaagataaatgcatgtatatattcactgcagcactgttcactgtagcaaagacatggaaccaacccaaatgcccgtcaatgatagactggataaagaaaatgtggtacatatacaccatggaatgctatacacccattaaaaagaatgagatcatctcctttgcagggacatggatgaagctggaagccattatcctcagcaagctaacacaggaacagaaagccaaacaccacatgttctcacttataagtgagagctgaccaaag-gaacacatgcacacaggtaggggaacaacacactctggggccactcagaagcaggagagagcatcagaaaaaatag-taatgcatgccgggcttaatacctggatgatgggtggataggtgcagcaaaccaccatggtacacacttacctgtgtaacaaatctgcacatcctgcacatgtatcctgaaagttaaaataaaataataaaaaaattaaaaatacacgaaagatctgaatagacatctctcaaaaaaagacatatgaatggcaaacaggtatacaaaaaggtgcttaacatcactgacatcagagaaaggcaatcaaaactacaatgagatattatctcaacccagttaaaatggc-ttttatccaaaagacaggcagtaacaaatgctggcgaggatgtgatgggaaccctcacacactgttggtggaaatgtgagtcagtacaacttctatggagaactgcttggaggttcctcaaaaagtaaaactagagctaccataggatccagcaaccccaatgctgggtacatacccagaagaaagcaaatcagtatattgaagggatacctgcactcccatgttccttctagcactgttcacaatagccaagattggaaagcaacctagttagtgtccatcaacaaacgaatggataaagaaaaggtggtgcacatacgcggtggagcactcttcagccata-aaagacagtgagagcctatcatttgcaatagcatggatggaactggcggtcattaagtgaaattaggtaaagaaaaacaaacaaccatgacatgttctctcttatttgtgggagctaaaaagtaaacagtcaaactcatggagatacagagtggaaggatggttactggaggctgggaaggcacagggcgagagaggtggggatggttaatggataaaaaaggtaattagaaagaatgaataaaaccgagtatttgtagtatttgacagcaacagaatgcctagagtcaataataatttaattgtacattaaaaaaataaagagtataattggatgggttgtaacacaaaggaaaaaggttggaggtgatggacaccccatttaccatgctgtaattatcatgcactgcaggct---tgtatgga----tctcacataccccattaacatatacacctaccgtgtgcccacaaaaataaaTATTAAACTTTTAAAAAATTATGAAAATCGTCATCATAATTCACAACGATCAATAAA-TAT-AAAAAATGTACATTCTATGTCTGAGTTGATGCAGGGCAAGAATGTATTAAGAGAGAA----AGAACTGCAAACAAACAACATCCTGAGAGCAAGAAACCGGAGAAATAACAGAAACTCCAGGGAGAAG
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106273245 1730 + 112612857 attgtggcgattcctcaaagatttagaacagaaaataccatttgacccagcaatcccattactgggtatatacccaaaggaatataaatcattctgttataaagataaatgcatgtatatattcactgcagcactgttcactgtagcaaagacatggaaccaacccaaatgcccatcaatgatagactggataaagaaaatgtggtacatatacaccatggaatgctatacacccataaaaaagaatgagatcatctcctttgcagggacatggatgaagctggaagccattatcctcagcaagctaacacaggaacagaaagccaaacaccacatgttctcacttataagtgagagctgaccaaag-gaacacatgcacacaggtaggggaacaacacactctggggccactcagaagcaggagagagcatcagaaaaaatagataatgcatgccgggcttaatacctggatgatgggtggataggtgcagcaaaccaccatggtacacacttacctgtgtaacaaatctgcacatcctgcacatgtatcctgaaagttaaaataaaataataaaaaaattaaaaatacacgaaagatctgaatagacatctctcaaaaaaagacatatgaatggcaaacaggtatacaaaaaggtgcttaacatcactgacatcagagaaaggcaatcaaaactacaatgagatattatctcaacccagttaaaatggc-ttttatccaaaagacaggcagtaacaaatgctggcgaggatgtgatgggaaccctcacacactgttggtggaaatgtgagtcagtacaacttctatggagaactgcttggaggttcctcaaaaagtaaaactagagctaccataggatctagcaaccccaatgctgggtacatacccagaagaaagcaaatcagtatattgaagggatacctgcactcccatgttccttctagcactgttcacaatagccaagattggaaagcaacctagttagtgtccatcaacaaacgaatggataaagaaaaggtggtgcacatacgcggtggagcactcttcagccata-aaagacagtgagagcctatcatttgcaatagcatggatggaactggcggtcattaagtgaaattaggtaaagaaaaacaaacaaccatgacatgttctctcttatttgtgggagctaaaaagtaaacagtcaaactcatggagatacagagtggaaggatggttactggaggctgggaaggcacagggcgagagaggtggggatggttaatggataaaaaaggtaattagaaagaatgaataaaaccgagtatttgtagtatttgacagcaacagaatgcctatagtcaataataatttaattgtacattaaaaaaataaagagtataattggatgggttgtaatacaaaggaaaaaggttggaggtgatggacaccccatttaccatgctgtaattatcatgcactgcaggct---tgtatgga----tctcacataccccattaacatatacacctaccgtgtgcccacaaaaataaaTATTAAACTTTTAAAAAATTATGAAAATCGTCATCAAAATTCACAACGATCAATAAA-TAT-AAAAAATGTACATTCTATGTCTGAGTTGATGCAGGGCAAGAATGTATTAAGAGAGAA----AGAACTGCAAACAAACAACATCCTGAGAGCAAGAAACCGGAGAAATAACAGAAACTCCAGGGAGAAG
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22653554 1730 +  28977278 attgtggcgattcctcaaagatttagaacagaaaataccatttgacccagcaatcccattactgggtatatacccaaaggaatataaatcattctgttataaagataaatgcatgtatatattcactgcagcactgttcactgtagcaaagacatggaaccaacccaaatgcccatcaatgagagactggataaagaaaatgtggtacatatacaccatggaatgctatacacccataaaaaagaatgagatcatctcctttgcagggacatggatgaagctggaagccattatcctcagcaagctaacacaggaacagaaagccaaacaccacatgttctcacttaaaagtgagagctgaccaaag-gaacacatgcacacaggtaggggaacaacactctctggggcctgtcagaagcaggagagagcatcagaaaaaatagataatgcatgccgggcttaatacctggatgatgggtggataggtgcagcaaaccaccatggtacacacttacctgtgtaacaaatctgcacatcctgcacatgtatcctgaaagttaaaataaaataataaaaaaattaaaaatacacaaaagatctgaatagacatctctcaaaaaaagacatatgaatggcaaacaggtatacaaaaaggtgcttaacatcactgacatcagagaaaggcaatcaaaactacaatgagatactatctcaacccagttaaaatggc-ttttatccaaaagacaggcagtaacaaatgctggcgaggatgtgatgggaaccctcacacactgttggtggaaatgtgagtcagtacaacttctatggagaactgcttggaggttcctcaaaaagtaaaactagagctaccataggatccagcaaccccaatgctgggtacatacccagaagaaagcaaatcagtatattgaagggatacctgcactcccatgttccttctagcactgttcacaatagccaagattggaaagcaacctagttagtgtccatcaacaaatgaatggataaagaaaaggtggtgcacatacgcggtggagcactcttcagccata-aaagacagtgagagcctatcatttgcaatagcatggatggaactggaggtcattaagtgaaattaggtaaagaaaaacaaacaaccatgacatgttctctcttatttgtgggagctaaaaagtaaacagtcaaactcatggagatacagagtggaaggatggttactggaggctgggaaggcacagggcgagagaggtggggatggttaatggataaaaaaggtaattagaaagaatgaataaaaccgagtatttgtagtatttgacagcaacagaatgcctatagtcaataataatttaattgtacattaaaaaaataaagagtataactggatgggttgtaacacaaaggaaaaaggttggaggtgatggacaccccatttaccatgctgtaattatcatgcactgcaggct---tgtatgga----tctcacataccccattaacatacacacctaccgtgtgcccacaaaaataaaTATTAAACTTTTAAAAAATTATGAAAATCGTCATCAAAATTCACAACGATCAATAAA-TAT-AAAAAATGTACATTCTATGTCTGAGTTGATGCAGGGCAAGAATGTATTGAGAGAGAA----AGAACTGCAAACAAACAACATCCTGAGAGCAAGAAACCGGAGAAATAACAGAAACTCCAGGGAGAAG
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1922663 1729 +   8072957 attgtggcgattcctcaaagatttagaacagaaaacatcatttgacccagcaatcccattactgggtatatacccaaaggaatataaatcattctgttataaagataaatgcatgtatatattcactgcagcactgttcactgtagcaaagacatggaaccaacccaaatgcccatcaatgatagactggataaagaaaatgtggtacatatacaccatggaatgctatacacccataaaaaagaatgagatcatctcctttgcagggacatggatgaagctggaagccattatcctcagcaaactaacacaggaacagaaagccaaacaccacatgttctcacttataagtgagagctgaccaaag-gaacacatgcacacaggtaggggaacaacacactctggggtcactcagaagcaggagagagcatcagaaaaaatagataatgcatgccgggcttaatacctggatgatgggtggatagatgcagcaaaccaccatggtacacacttacctgtgtaacaaatctgcacatcctgcacatgtatcctgaaagttaaaataaaataataaaaaaattaaaaatacacgaaagatctgaatagacatttctcaaaaaaagacatatgaatggcaaacaggtatacaaaaaggtgcttaacatcactgacatcagagaaaggcaatcaaaactacaatgagatattatctcaacccagttaaaatggc-ttttatccaaaagacaggcaataacaaatgctggcgaggatgtgatgggaaccctcacacactgttggtggaaatgtgagtcagtacagcttctatggaggacagttaggaggttcctcaaaaactaaaactagagctaccataggatccagcaaccccaatgctgggtacatacccagaagaaagcaaatcagtatattgaagggatacctgcactcccatgttccttttagcactgttcacaatagccaagattggaaagcaacctagttagtgtccatcaacaaacgaatggataaagaaaaggtggtgcacatacgcggtggagcactcttcagccata-aaagacagtgagagcctatcatttgcaatagcatggatggaactggcggtcattaagtgaaattaggtaaagaaaaacaaacaaccatgacatgttctctcttatttgtgggagctaaaaagtaaacagtcaaactcatggagatacagagtagaaggatgattactagaggctgggaaggcacagggcgagagaggtggggatggttaatggataaaaaaggtaattagaaagaatgaataaaaccgagtatttgtagtatttgacagcaacagaatgcctatagtcaataataatttaattgtacattaaaaaactaaagagtataattggatggtttgtaacacaaaggaaaaaggttggaggtgatggacaccccatttaccatgctgtgattatcatgcactgcaggcc---tgtatgga----tctcacataccccattaacatatacacctaccgtgtgcccacaaaaataaaTATTAAACATTT-AAAAATTATGAAAATTGTAATCAAAATTCACAATGATCAATAAA-TAC-AAATAATGTAAGTTCTATGTCTGAGTTGATGCAGGGCAAGAATGTATTAAGAGAGAA----AGAACTGCAAACAAACAACATCCTGAGAGCAAGAAACCGGAGAAATGACAGAAACTCCAGGGAGAAG
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102640601 1731 + 108555830 attgtgccgattcctcaaagatttagaccagaaaataccatttgacccagcaatcccattactgggtatatacccaaaggaatataaatcattctgttataaagataaatgcatatatatattcattgcagcactgttcactgtagcaaagacatggaaccaacccaaatgcccatcaatgatagactggataaagaaaatgtggtacatatacaccatggaatgctatacacccataaaaaagaatgagatcatctcctttgcagggacatggatgaagccggaagccattatcctcagcaaactaacacaggaacagaaagccaaacaccacatgttctcacttgtaagtgagagctgaccaaagagaacacatgcacacaggtaggggaacaacacactctggggccactcagaagcaggagaaagcatcagaaaaaatagataatgcatgccgggcttaatacctggatgatgggtggataggtgcagcaaaccaccaaggtacacacttacctgtgtaacaaatctgcacatcctgcacatgtatcccgaaagttaaaataaaataataaaaaaataaaaaatacacaaaagatccgaatagacatttctcaaaaaaagacatatgaatggcaaacaggtatacaaaaaggtgcttaacatcactgacatcagagaaaggcaatcaaaactacaatgagatattatctcaccccagttaaaatggc-ttttatccaaaagacaggcaatagcaaatgctggcaaggatgtgatgggaagcctcacacactgttggtggaaatgtgagtcggtacaacttctatggagaaccgtttggaggttcctcaaaaactaaaactagagctaccataggatccagcaaccccaatgctgggtacatacccagaagaaagcaaatcagtatattgaagggatacctgtactcccatgttccttctagcactgttcacaatagccaagattggaaagcaacctagttagtgtccatcaacaaacgaatggataaagaaaacgtggtgcacatacgcggtggagcactcttcagccata-aaagacagtgagagcctatcatttgcaatagcacggatggaactggctgtcattaagtgaaattaggtaaagactaacaaacaaccatgacatgttctctcttatttgtgggagctaaaaagtaaacagtcaaactcatggagatacagagtagaaggatggttactagaggctgggaaggcacagggcgagagaggtggggatggttaatgggtaaaaaaggtaattagaaagaatgaataaaaccgagtatttgtagtatttgacagcaacagaatgcctatagtcaataataatttaattgtacattaaaaaagtaaagagtataattggatggtttgtaacacaaaggaaaaaggttggaggtgatggacaccccatttaccatgctgtgattatcatgcactgcaggcc---tgtatgga----tgtcacatatcctattaacatatacacctaccttgtgcccacaaaaataaaCATTAAACTTTTAAAAAATTATGAAAATTGTCACCAAAATTCACAACGATCAATAAA-CAT-AAAAAATGTACATGCTATGTCTGAGTTGATGTAGGGCAAGAATGTATTAAGAGAGAA----AGAACTGCAAACAAACAACATCCTGAGAGCAAGAAACCAGAGAAATGACAGAAACTCCAGGGAGAAG
i chlSab2.chr12             C 0 C 0
s manLeu1.NW_012104154v1      2135739 1730 +   2144893 attgtggcgattcctcaaagatttagaacagaaaacatcatttgacccagcaatcccattactgggtatatacccaaaggaacataaatcattctgttataaagataaatgcatgtatatattcactgcagcactgttcactgtagcaaagacatggaaccaacccaaatgcccatcaatgatagactggataaagaaaatgtggtacatatacaccatggaatgctatacacccataaaaaagaatgagatcatctcctttgcagggacatggatgaagctggaagccattatcctcagcaaactaacacaggaacagaaagccaaacaccacatgttctcacttataagtgagagctgaccaaag-gaacacatgcacacaggtaggggaacaacacactctggggccactcagaagcaggagagagcatcagaaaaaatagataatgcatgccgggcttaatacctggatgatgggtggatagatgcagcaaaccaccatggtacacacttacctgtgtaacaaatctgcacatcctgcacatgtatcctgaaagttaaaataaaataacaaaaaaattaaaaatacacaaaagatctgaatagacatttctcaaaagaagacatatgaatggcaaacaggtatacaaaaaggtgcttaacatcactgacatcagagaaaggcaatcaaaactacaatgagatattatctcaacccagttaaaatggc-ttttatccaaaagacaggcaataacaaatgctggcgaggatgtgatgggaaccctcacacactgttggtggaaatgtgagtcagtacaacttctatggagaactgcttggaggttcctcaaaaactaaaactagagctaccataggatccagcaaccccaatgctgggtacatacccagaagaaagcaaatcagtatattgaagggatacctgcactcccatgttccttctagcactgttcacaatagccaagattggaaagcaacctagttagtgtccatcaacaaacgaatggataaagaaaaggtggtgcacatacgcagtggagcactcttcagccata-aaagacagtgagagcctatcatttgcaatagcatggatggaactggaggtcattaagtgaaattaggcaaagaaagacaaacaaacatcacatgttctctcttatttgtgggagctaaaaagtaaacagtcaaactcatggagatacagagtagaaggatggttactagaggctgggaaggcacagggcgagagaggtggggatggttaatggataaaaaaggtaattagaaagaatgaataaaaccgagtatttgtagtatttgacagcaacagaatgcctatagtcaataataatttaattgtacattaaaaaaataaagagtataattggatggtttgtaacacaaaggaaaaaggttggaggtgatggacaccccatttaccatgctgtgattatcatgcactgcaggcc---tgtatgga----tctcacataccccattaacatatacacctaccgtgtgcccacaaaaataaaTATTAAAATTTTAAAAAATTATGAAAATCGTCATCAAAATTCACAACGATCAGTAAA-TAT-AAAAAATGTACATTCTATGTCTGAGTTGATGCAGGGCAAGCATGTATTAAGAGAGAA----AGAACTGCAAACAAACAACATCCTGAGAGCAAGAAACCGGAGAAATGACAGAAACTCCAGGGAGAAG
i manLeu1.NW_012104154v1    C 0 I 7109
s colAng1.NW_012115910v1      6780552 1715 -   6934359 actgtggcaattcctcaaagatttagaatcggaaataccatttgacccagcaatcccattactaggtat--------------ataaattgttattttataaagataaatgcacctatatattcgttgcagcactattcacagtagcaaagacatggaatcaacccaaatgcccatcatggatagactggataaagaaaatgtagtgcatataaatcatggaacactaggtggccacaaaaaggaatgagattatgtcctttgcagggacatggatgaagctggaagccattatcctcagcaaactaacataggaacagaaaaccaaacaccacatgttctcacttataagtgggagccgaccaaagggaacgcatgcacacaggcagggatacaacacactctagggcctgtcagaagcaggagagatcatcaggaaaaatagctaatgcataccgggcttaatacctacatgatgggttgacaggtacagcaaaccaccatggcacacatttacctatgcaacaaacctacacatcctgcacatgtaccccagaagttaaaataaaaTAGTTttaa----aaagatacataaaacatctgaacagacatttctcaaaagaagacatatgaatggcaaacaggtatatgaaaaggtgctcaacatcactgataccagagaaaggcaatcaaaaccacaatgagatctcgtttcaccccagttaaaatggctttttctctaaaagacaggcaataacaaatgctggcgaggatgtaaagggaaccctcatacactgttgatggaaatgtgagtcagtacagcttctatggtgaacagttaggaggttcctcaaaaactaaaactagagctaccatatgat---------ccactgctgggtacgtacccagaagaaaggaaatcagtagattgaagggatacacggactcccatgttccttctagcactgttcacaatagccaagattttgaatcaacctagtgagtgttcgtcaacagacaacaggataaagaaaaggtggtatatacatgcagtggagtactcttcagccatagaaaaacaaggagagcctattatttgcaatagcatggacggaactggaggtcattaagtgaaatcaggcaaagaaagacaaacaaacatcacatgttctctcttatttgtgagagctaaaaattaaacagtcaaactcatggagatacagagtagaaggatggttactagaggctgggaaggcccagtggcagagaggtggggatggttaatggacaaaaaaagtaattagaaagaatgaataaaattgagtatttatagtatttgacagcaatagaatgcctatagtcaataataacgtaattgtacatttaaaaaatgaagaggataattggatggtttgtaacacaaaggaaaacggttggaggtgatggacacctcatttactatgctgcgatgattacacactgcatgcc---tgaatgaaagtgtctcatgtactccattaaaatatacacctactgcgtgcccacaaaaataaaTATTAAACATTTTAAAAACTATGAAAATTGTAATCAAAATTCACAATGATCAATAAACTAC-AAATAATGTAAGTTCTATGTCTGAGTTGATGCAGGGTAAGAACATATTAAGGGGGAAAGCTAGAGCCGCACACAAATGAAATCCTGAGAGTAAGAAACTGGAGAAATAACAGAAACTCCAGGGAGAAG
i colAng1.NW_012115910v1    C 0 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609    0 -     21860 C

a score=21230.000000
s hg38.chr15_KI270851v1_alt     45336 7 +    263054 TCTAGAT
s gorGor5.CYUI01000350v1        48256 7 -    142253 TCTAGAT
i gorGor5.CYUI01000350v1    C 0 I 1
s nomLeu3.chr6               75911730 7 + 121039945 TCTAGAT
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr15             108363687 7 + 111343173 CCTAGAT
i rheMac8.chr15             C 0 I 1
s macFas5.chr15             106274975 7 + 112612857 CCTAGAT
i macFas5.chr15             C 0 I 1
s macNem1.NW_012012133v1     22655284 7 +  28977278 CCTAGAT
i macNem1.NW_012012133v1    C 0 I 1
s cerAty1.NW_012000030v1      1924392 7 +   8072957 CCTAGAT
i cerAty1.NW_012000030v1    C 0 I 1
s chlSab2.chr12             102642332 7 + 108555830 CCTAGAT
i chlSab2.chr12             C 0 I 1
s colAng1.NW_012115910v1      6782267 7 -   6934359 TCTAGAt
i colAng1.NW_012115910v1    C 0 I 329
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e manLeu1.NW_012104154v1      2137469 7109 +   2144893 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609 0 -     21860 C

a score=118937.000000
s hg38.chr15_KI270851v1_alt     45343 45 +    263054 TTAAAGATGCAGGAGATTGAGGGACTGGCACAGAGATCTCCACAA
s gorGor5.CYUI01000350v1        48264 44 -    142253 TTAAAGATGCAGGAGATTGAGG-ACTGGCACAGAGATCACCACAA
i gorGor5.CYUI01000350v1    I 1 C 0
s nomLeu3.chr6               75911738 45 + 121039945 TTAAAATTGCGGGAGATTGAGGGACTGGCACAGAGATCACCACAA
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr15             108363695 45 + 111343173 TTAAAGAAGCGAGAAACTGAAGGACTGGCACAGAGATCTCCACAA
i rheMac8.chr15             I 1 C 0
s macFas5.chr15             106274983 45 + 112612857 TTAAAGAAGCGAGAAACTGAAGGACTGGCACAGAGATCTCCACAA
i macFas5.chr15             I 1 C 0
s macNem1.NW_012012133v1     22655292 45 +  28977278 TTAAAGAAGCGAGAAACTGAAGGACTGGCACAGAGATCTCCACAA
i macNem1.NW_012012133v1    I 1 C 0
s cerAty1.NW_012000030v1      1924400 45 +   8072957 TTAAAGGAGTGAGAAACTGAAGGACTGGCACAGAGATCTCCACAA
i cerAty1.NW_012000030v1    I 1 C 0
s chlSab2.chr12             102642340 43 + 108555830 TTAAAGAAGCGGGAAACTGAAGGACTGGCAC--AGATCTCCACAA
i chlSab2.chr12             I 1 C 0
s colAng1.NW_012115910v1      6782603 45 -   6934359 TTAAAGACATGGGAAATTGAGGGACTGGCACAGAGATCTCCACAA
i colAng1.NW_012115910v1    I 329 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e manLeu1.NW_012104154v1      2137469 7109 +   2144893 I
e saiBol1.JH378203            2610352 1036 -   8192610 I
e calJac3.chrUn_GL286352         4609  0 -     21860 C

a score=8190.000000
s hg38.chr15_KI270851v1_alt     45388 2 +    263054 AA
s gorGor5.CYUI01000350v1        48308 2 -    142253 AA
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75911783 2 + 121039945 AA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr15             108363740 2 + 111343173 AA
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106275028 2 + 112612857 AA
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22655337 2 +  28977278 AA
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1924445 2 +   8072957 AA
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102642383 2 + 108555830 AA
i chlSab2.chr12             C 0 C 0
s colAng1.NW_012115910v1      6782648 2 -   6934359 AA
i colAng1.NW_012115910v1    C 0 C 0
s saiBol1.JH378203            2611388 2 -   8192610 aA
i saiBol1.JH378203          I 1036 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e manLeu1.NW_012104154v1      2137469 7109 +   2144893 I
e calJac3.chrUn_GL286352         4609 0 -     21860 C

a score=16423.000000
s hg38.chr15_KI270851v1_alt     45390 3 +    263054 CCA
s panTro5.chr9               65528115 3 + 116767853 CCA
i panTro5.chr9              N 0 C 0
s panPan2.chr9               87028764 3 + 138149186 CCA
i panPan2.chr9              N 0 C 0
s gorGor5.CYUI01000350v1        48310 3 -    142253 CCA
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75911785 3 + 121039945 CCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr15             108363742 3 + 111343173 CCA
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106275030 3 + 112612857 CCA
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22655339 3 +  28977278 CCA
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1924447 3 +   8072957 CCA
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102642385 3 + 108555830 CCA
i chlSab2.chr12             C 0 C 0
s colAng1.NW_012115910v1      6782650 3 -   6934359 CCA
i colAng1.NW_012115910v1    C 0 C 0
s saiBol1.JH378203            2611390 3 -   8192610 TCG
i saiBol1.JH378203          C 0 C 0
e cebCap1.NW_016107368v1      7144027 1066 +   9895066 I
e manLeu1.NW_012104154v1      2137469 7109 +   2144893 I
e calJac3.chrUn_GL286352         4609 0 -     21860 C

a score=534941.000000
s hg38.chr15_KI270851v1_alt     45393 96 +    263054 GGTAACATCTGTGTTCCAGGG-AACAGAATAGAAAATGGACCCAGGGCTGTCTCTGACAGGGTGAGCAACTGGAGTGGGAAGGAAAGATCTGGGGGA
s panTro5.chr9               65528118 97 + 116767853 GGTGACACCTGTGTTCCAGGGGAAGAGAATAGAAAATGGACTAAGGACTGTCTCTGACAGGGTGAGCAGCTGGAGTGGGAAGGAGCGATCTGGGGGA
i panTro5.chr9              C 0 C 0
s panPan2.chr9               87028767 97 + 138149186 GGTGACACCTGTGTTCCAGGGGAAGAGAATAGAAAATGGACTAAGGACTGTCTCTGACAGGGTGAGCAGCTGGAGTGGGAAGGAGCGATCTGGGGGA
i panPan2.chr9              C 0 C 0
s gorGor5.CYUI01000350v1        48313 96 -    142253 GGTAACGTCTGTGTTCCAGGG-AACAGAATAGAAAATGGACCCAGGGCTGTCTCTGACAGGGTGAGCAACTGGAGTGGGAAGAAAAGATCTGGGGGA
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75911788 96 + 121039945 GGTAACATCTGTGTTCCAGGG-AACAGAATAGAAAATGGACCCAGGGCTGTCTCTGACAGGGTGAGCAACTGGAGTGGGAAAAAAAGATCTGGGGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr15             108363745 95 + 111343173 GGTGACACTTGTGTTCCAGGA-AACAGAATAGAAAAGGGACTCAGGGCTGTCTCTGACA-GGTGAGCAGCTAGAGTGGGAGGGAGGGATCCGGGGGA
i rheMac8.chr15             C 0 C 0
s macFas5.chr15             106275033 95 + 112612857 GGTGACACTTGTGTTCCAGGA-AACAGAATAGAAAAGGGACTCAGGGCTGTCTCTGACA-GGTGAGCAGCTAGAGTGGGAGGGAGGGATCCGGGGGA
i macFas5.chr15             C 0 C 0
s macNem1.NW_012012133v1     22655342 95 +  28977278 GGTGACACTTGTGTTCCAGGA-AACAGAATAGAAAATGGACCCAGGGCTGTCTCTGACA-GGTGAGCAGCTAGAGTGGGAGGGAGGGATCCGGGGGA
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1924450 95 +   8072957 GGTGACACTTGTGTTCCAGGA-AACAGAATGGAAAATGGACCCAGGGCTGTCTCTGACA-GGTGAGCAGCTAGAGTGGGAAGGAGGGATCCGGCGGA
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102642388 95 + 108555830 GCTGACACCTGTGTTCCAGGA-AACAGAATAGAAAAGGGACCCAGGGCTGTCTCGGACA-GGTGAGCAGCTAGAGAGGGAGGGAGGGATCTGGGGGA
i chlSab2.chr12             C 0 C 0
s colAng1.NW_012115910v1      6782653 96 -   6934359 GGTGACACCTGTGTTCCAGGA-AACAGAATAGAAAATACACCCAGGACTGTCTCTGACAGGGTGAGCAACTGGAGAGGGAAGAAAAGATCTGGGGGG
i colAng1.NW_012115910v1    C 0 C 0
s saiBol1.JH378203            2611393 91 -   8192610 GGTCACATCTGTGTTCCAGGG-GACAG-ACAGAAAACGGACCCAGGC----CGCTGACAGGGTGAGCTGCTGGAGTGGGAAGGAGGGATCTGGCAGA
i saiBol1.JH378203          C 0 C 0
s cebCap1.NW_016107368v1      7145093 95 +   9895066 GGTAGCATCTGTGTTCCAGGG-GACAG-ATAGAAAATGGACCCAGGCCTGTCTCTGACAGGGTGAGCTGCTGGAGTGGGAAGGAGGGATCTGGTAGA
i cebCap1.NW_016107368v1    I 1066 I 7
e manLeu1.NW_012104154v1      2137469 7109 +   2144893 I
e calJac3.chrUn_GL286352         4609  0 -     21860 C

a score=79789.000000
s hg38.chr15_KI270851v1_alt     45489 24 +    263054 -CCCAGGAGGGTGGAGGGACTGGAA
s panTro5.chr9               65528215 24 + 116767853 -CCCAGGAGGGTGGAGGGACTGGGG
i panTro5.chr9              C 0 I 1
s panPan2.chr9               87028864 24 + 138149186 -CCCAGGAGGGTGGAGGGACTGGGG
i panPan2.chr9              C 0 I 1
s gorGor5.CYUI01000350v1        48409 19 -    142253 -CCCA-----GTGGAGGGACTGGAA
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75911884 24 + 121039945 -CCCAGGAGGGTGGAGAGACCTGGG
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr15             108363840 24 + 111343173 -CCCAGGAGGGTGGAGGGACCCAGG
i rheMac8.chr15             C 0 I 1
s macFas5.chr15             106275128 24 + 112612857 -CCCAGGAGGGTGGAGGGACCCAGG
i macFas5.chr15             C 0 I 1
s macNem1.NW_012012133v1     22655437 24 +  28977278 -CCCAGGAGGGTGGAGGGACCCAGG
i macNem1.NW_012012133v1    C 0 I 1
s cerAty1.NW_012000030v1      1924545 24 +   8072957 -CCCAGGAGGGTGGAGGGACCCAGG
i cerAty1.NW_012000030v1    C 0 I 1
s chlSab2.chr12             102642483 24 + 108555830 -CCCAGGAGGGTGGAGGGACCCAGG
i chlSab2.chr12             C 0 I 1
s colAng1.NW_012115910v1      6782749 23 -   6934359 -CCCAGGAACGTGGAGGGA-CTGGA
i colAng1.NW_012115910v1    C 0 I 1
s saiBol1.JH378203            2611484  7 -   8192610 TCCCGGC------------------
i saiBol1.JH378203          C 0 C 0
e cebCap1.NW_016107368v1      7145188  7 +   9895066 I
e manLeu1.NW_012104154v1      2137469 7109 +   2144893 I
e calJac3.chrUn_GL286352         4609  0 -     21860 C

a score=905755.000000
s hg38.chr15_KI270851v1_alt     45513 138 +    263054 CTGGGACCTGAAGGAGGGGCTGCGCTTCAGcctcctcctcccactgcccctcccctgcccccAGGAGCCCTTGGTGAGGAGGAGGCC-CCAGCTCTGTGATGCAGGCCTGGGCTCCAGTCCCTAGTCCCAAAAGCGATG
s panTro5.chr9               65528240 138 + 116767853 CTGGGAGCTGAGGGTGGGGCTGTAcctcagcctcctcctcccactgcccctccccgacccccAGGAGCCCTTTGTGAGGAGGAGGCC-CCAGCTGTGTGATACAAGCCTGGGCCCCAGTCCCTAGTCCCAAAGGGGATG
i panTro5.chr9              I 1 C 0
s panPan2.chr9               87028889 138 + 138149186 CTGGGAGCTGAGGGTGGGGCTGTAcctcagcctcctcctcccactgcccctccccgacccccAGGAGCCCTTTGTGAGGAGGAGGCC-CCAGCTGTGTGATACAAGCCTGGGCCCCAGTCCCTAGTCCCAAAGGGGATG
i panPan2.chr9              I 1 C 0
s gorGor5.CYUI01000350v1        48428 138 -    142253 CTGGGACCTGAAGGAGGGGCTGTGCTTCAGcctcctcctcccactgcccctcccctgcccccAGGAGCCCTTGGTGAGGAGGAGGCC-CCAGCTCTGTGATGCAGGCCCGGGCTCCAGTCCCTAGTCCCAAAAGCGATG
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75911909 138 + 121039945 CTGGGACCTGAGGGCGGGACTGTGcttcagcctcctcttcccactgcccttcccctgccccCAGGAGCCCTTGGTGAGGAGGAGACC-CCAGCTCTGTGATGCAGGCCCGGGCTCCAGTCCCTAATCCCAAAAGCAATG
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr15             108363865 138 + 111343173 CTGGGAGCTGAGGGCGGGGCTGTGCTTCAGcctcctcctcccactgcccctcccccgcccccAGGAGCCCTTTGTGAGGAAGAGGCC-CCAGCTCTGTGATGCAGGCCTGGGCCCCACTCCCTAAACCCAAAGGGGATG
i rheMac8.chr15             I 1 C 0
s macFas5.chr15             106275153 138 + 112612857 CTGGGAGCTGAGGGCGGGGCTGTGCTTCAGcctcctcctcccactgcccctcccctgcccccAGGAGCCCTTTGTGAGGAAGAGGCC-CCAGCTCTGTGATGCAGGCCTGGGCCCCACTCCCTAGACCCAAAGGGGATG
i macFas5.chr15             I 1 M 10799
s macNem1.NW_012012133v1     22655462 137 +  28977278 CTGGGAGCTGAGGGCGGGGCTGTGCTTCAGcctcctcctcccactgcccctcccctgcccccAGGAGCCCTTTGTGAGGAAGAGG-C-CCAGCTCTGTGATGCAGGCCTGGGCCCCACTCCCTAGACCCAAAGGGGATG
i macNem1.NW_012012133v1    I 1 C 0
s cerAty1.NW_012000030v1      1924570 138 +   8072957 CTGGGAGCTGAGGGCAGGGCTGTGCTTCAGcctcctcctcccactgcccctcccctgcccccAGGAGCCCTTTGTGAGGAAGAGGCC-CCAGCTCTGTGATGCAGGCCTGGGCCCCACTCCCTAGACCCAAAGGGGATG
i cerAty1.NW_012000030v1    I 1 C 0
s chlSab2.chr12             102642508 138 + 108555830 CTGGGAGCTGAGGGCGGGGCTGTGCTTCAGcctcctcctcccactgcccctcccccagccccAGGAGCCCTTTGTGAGGAAGAGGCC-CCAGCTCTGTGATGCAGGCCTGGGCCCCACTCCCTAGACCCAAAGGGGATG
i chlSab2.chr12             I 1 C 0
s colAng1.NW_012115910v1      6782773 139 -   6934359 CTGGGACCTGAGGGCGGGGCTGTGCTTCAACCTCCTCCTCCCACTGCCCTTGCCCTGTCGTCAGGAGCCCTTGGTGAGGAGGAGGTCACCAGCTCTGTGATGCAGGCCTGGGCCCCAGTCTCTAGTCCCAAAAGTGATG
i colAng1.NW_012115910v1    I 1 C 0
s saiBol1.JH378203            2611491 138 -   8192610 CTGGGAGCTGAGGGCGGGGCTGTGCTTCAGCCTCCTCCTCCCACTGCCCCTCCCCTGCCCCCAGAAGCCCTTTGTGAGGAGGAGGCC-CCAGCTCTGTGATGCAGGCCTGGGCCCCAGTCCCTAGTCCCAAAGGGGACG
i saiBol1.JH378203          C 0 C 0
s cebCap1.NW_016107368v1      7145195 138 +   9895066 CTGGGAGCTGAGGGCGGGGCTGTGCTTCAGcctcctcctcccactgcccctcccctgcccccAGGAGCCCTTTGTGAGGAGGAGGCC-CCAGCTCTGTGATGCAGGCCTGGGCCCCAGTCCCTAGTCCCAAAGGGGATG
i cebCap1.NW_016107368v1    I 7 C 0
e manLeu1.NW_012104154v1      2137469 7109 +   2144893 I
e calJac3.chrUn_GL286352         4609   0 -     21860 C

a score=116978.000000
s hg38.chr15_KI270851v1_alt     45651 24 +    263054 CCCAGGGCTCAGTTGCTTGAAGGC--
s panTro5.chr9               65528378 24 + 116767853 CCCAGAGCTCAGTTGCTTGAAGGC--
i panTro5.chr9              C 0 I 110
s panPan2.chr9               87029027 24 + 138149186 CCCAGAGCTCAGTTGCTTGAAGGC--
i panPan2.chr9              C 0 I 110
s gorGor5.CYUI01000350v1        48566 23 -    142253 CCC-GGGCTCAGTTGCTTGAAGGC--
i gorGor5.CYUI01000350v1    C 0 C 0
s nomLeu3.chr6               75912047 24 + 121039945 CCCAGGGCTCAGTTGCTTGAAGGC--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr15             108364003 24 + 111343173 CCCAGCCCTCAGTTGCTTGaaggc--
i rheMac8.chr15             C 0 N 0
s macNem1.NW_012012133v1     22655599 24 +  28977278 CCCGGCCCTCAGTTGCTTGAAGGC--
i macNem1.NW_012012133v1    C 0 C 0
s cerAty1.NW_012000030v1      1924708 24 +   8072957 CCCAGCCCTCAGTTGCTTGAAGGC--
i cerAty1.NW_012000030v1    C 0 C 0
s chlSab2.chr12             102642646 24 + 108555830 CCCAGCCCTCAGTTGCTTGAAGGC--
i chlSab2.chr12             C 0 C 0
s colAng1.NW_012115910v1      6782912 24 -   6934359 CCCAGGTCTCAGTTGCTTGAAGGT--
i colAng1.NW_012115910v1    C 0 C 0
s saiBol1.JH378203            2611629 26 -   8192610 CCCAGAGCTCAGTTGCTTGAAGGTGC
i saiBol1.JH378203          C 0 C 0
s cebCap1.NW_016107368v1      7145333 26 +   9895066 CCCAGAGCTCAGTTGCTTGAAGGCGC
i cebCap1.NW_016107368v1    C 0 C 0
e manLeu1.NW_012104154v1      2137469 7109 +   2144893 I
e calJac3.chrUn_GL286352         4609  0 -     21860 C
e macFas5.chr15             106275291 10799 + 112612857 M

a score=1722.000000
s hg38.chr15_KI270851v1_alt        45675 1 +    263054 A
s gorGor5.CYUI01000350v1           48589 1 -    142253 A
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75912071 1 + 121039945 A
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     48686 1 -     93100 G
i rheMac8.chrUn_NW_014998353v1 N 0 C 0
s macNem1.NW_012012133v1        22655623 1 +  28977278 G
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1924732 1 +   8072957 G
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102642670 1 + 108555830 G
i chlSab2.chr12                C 0 C 0
s colAng1.NW_012115910v1         6782936 1 -   6934359 G
i colAng1.NW_012115910v1       C 0 C 0
s saiBol1.JH378203               2611655 1 -   8192610 G
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7145359 1 +   9895066 G
i cebCap1.NW_016107368v1       C 0 C 0
e panPan2.chr9                  87029051 110 + 138149186 I
e panTro5.chr9                  65528402 110 + 116767853 I
e manLeu1.NW_012104154v1         2137469 7109 +   2144893 I
e calJac3.chrUn_GL286352            4609 0 -     21860 C
e macFas5.chr15                106275291 10799 + 112612857 M

a score=1468457.000000
s hg38.chr15_KI270851v1_alt        45676 292 +    263054 ACATTGCACTTCAGATGG-AAAAAATGCTCTTTCCTCTGAAGAGCCCTAGTGCCACGTGGCTGGGCCCCAGCTCCACTCCCTGGATTGTGGATTTCATCCTCACCTCAGTGTGGAGCCTGGGCTTCCTCTTCCTATTAGCCCTCTACCTCCCCAGTGTCCCACCCTCACCCCCGCATGGGAGGAAGAGGAGCAGCAGGAAGGTAAGGAGCCCTCAGCCCAGCCCCACAGAGAAAGA--TTCTCTCTTCTTTTCCTCCCCTCATTTCCACTTTTCCTAAGTAATGAGAGACTCTCC
s panTro5.chr9                  65528512 292 + 116767853 ACATTGCACTTCAGATGG-AGAAAATGCTCTTTCCTCTGAAGAGCCCTAGTGCCACATGGCTGAGCCCCAGCTCCACTCCCTGGATGATGGATTTCATCCTCACCAGTGTGTGTGGCCTAGTGCTCCTCTTCCTATTGCTCCTCTACGTCCACAGTGACCCACCCTCACCCCCGCCCGGGAGGAAGAGGAGCAGCAGGGAGGTAAGGAGTCCTCAGCCCAGCCCCACAGAGAAAGA--TTCTCTCTTCTTTTCCTCCCCTCATTTCCACTTTTCCTAAGCAATGTGAGACCCTTC
i panTro5.chr9                 I 110 C 0
s panPan2.chr9                  87029161 292 + 138149186 ACATTGCACTTCAGATGG-AGAAAATGCTCTTTCCTCTGAAGAGCCCTAGTGCCACATGGCTGAGCCCCAGCTCCACTCCCTGGATGATGGATTTCATCCTCACCAGTGTGTGTGGCCTAGTGCTCCTCTTCCTATTGCTCCTCTACGTCCACAGTGACCCACCCTCACCCCCGCCCGGGAGGAAGAGGAGCAGCAGGGAGGTAAGGAGTCCTCAGCCCAGCCCCACAGAGAAAGA--TTCTCTCTTCTTTTCCTCCCCTCATTTCCACTTTTCCTAAGCAATGTGAGACCCTCC
i panPan2.chr9                 I 110 C 0
s gorGor5.CYUI01000350v1           48590 292 -    142253 ACATTGCACTTCAGATGG-AAAAAATGCTCTTTCCTCTGAAGAGCCCTAGTGCCACATGGCTGGGCCCCAGCTCCACTCCCTGGATTGTGGATTTCATCCTCACCTCAGTGTGAAGCCTGGGGTTCCTCTTCCTATTAGTCCCCTACCTCCCCAGTGACCCACCCTCACCCCTGCATGGGAGGAAGAGGAGCAGCAGGAAGGTAAGGAGCCCTCAGCCCAGCCCCACAGAGAAAGA--TTCTCTCTTCTTTTCCTCCCCTCATTTCCACTTTTCCTAAGTAATGAGAGACTCTCC
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75912072 272 + 121039945 ACATTGCACTTCAGATGGAAAAAAATGCTCTTTCCTCTGAAGAGCCCTAGTGCCACGTGGCTGGGCCCAAGCTCCACTCCCTGGATTGTGGATTTCATCCTCACTTGAGTGTGGAGCCAGGGGTTCCTCTTCCTACTGGTCCCCTACCTCCCCAGTGACCCACCCTCACCCCCGCACGGGAGGAAGAGGAG---------------------TCAGCCCAGCCCCACAGAGAAAGA--ATCTCTCTTCTTTTTCTCCCCTCATTTCCACTTTTCCTAAGCAATGAGAGACTCTCC
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     48687 294 -     93100 ACATTGTACTACAGATGA-AAAAAGTGCTCTTTTCTCTAAAGAGCCCTAGTGCCACATGGCTGGGCCCCAGCTCCAATCCCTGGATTGTGGATTTCATTCTCACCTGAGTGTGGAGCTGGGGGTTTCTCTTCCTATTACTCTCCTACCTTCCCAGTGACCCACTGTCACCACCGCTTGGAAGGAAGAGGAGCAGCAGGAAGGTAAGGAGCCCCCAGCCCAGCCCCACAGAGAAAGACTCTCTCTCTTCTTTTCCTCCCCTCATTCCCACTTTTCCTAAGCAGCGAGAGACCCTTC
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macNem1.NW_012012133v1        22655624 292 +  28977278 ACATTGCACTTCAGATGG-AGAAAATGCTCTTTCCTCTGAAGAGCCCTAGTGCCACATGGCTGAGCCCCAGCTCCACTCCCTGGATGATGGATTTCATCCTCACCAGTGTGTGTGGCCTGGTGCTCCTCTACCTGTTACTCTCCTACCTCCACAGTGACCCGCCCTCACCCCCGCCCGGGAGGAAGAGGAGCAGCAGGGAGGTAAGGAGCCCTCAGCCCAGCCCCACAGAGAAAGA--TTCTGTCTTCTTTTCCTCCCCTCATTTCCACTTTTCCCAAACAACGAGAGACGCTCC
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1924733 292 +   8072957 ACATTGCACTTCAGATGG-AGAAAATGCTCTTTTCTCTGAAGAGCCCTAGTGCCACATGGCTGAGCCCCAGCTCCACTCCCTGGATGATGGATTTGATCCTCACCAGTGTGTGTGGCCTGGTGCTCCTCTACCTGTTACTCTCCTACCTCCACAGTGACCCGCCCTCACCCCCGCCCGGGAGGAAGAGGAGCAGCAGGGAGGTAAGGAGCCCTCAGCCCAGCCCCACAGAGAAAGA--TTCTCTCTTCTTTTCCTCCCCTCATTCCCACTTTTCCCAAACAACGAGAGACGCTCC
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102642671 288 + 108555830 ACATTGCACTTCAGATGG-AGAAAATGCTCTTTCCTCTGAAGAGCCCTAGTGCCACATGGCTGAGCCCCAGCTCCACTCCCTGGATGAGGGATTTCATCCTCACCAGTGTGTGTGGCCTGGTGCTCCTCTACCTGTTACTCTCCTACCTCCACAGTGACCCGCCCTCACCCCCGCCCGGGAGGAAGAGGAGCAGCAGGGAGGTAAGGAGCCCTCAACCCAGGCCCACAAAGA------TTCTCTCTTCTTTTCCTCCCCTCATTTCCACTTTTCCTAAACAACCAGAGACGCTCC
i chlSab2.chr12                C 0 C 0
s colAng1.NW_012115910v1         6782937 292 -   6934359 ACATTGCACTTCAGATGG-AGAAAATGCTCTTTCCTCTGAAGAGCCCTAGTGCCACATGGCTGGGCCCCAGCTCCACTCCCTAGATTGTGGATTTCATTCTCACCTGAGTGTGGAGCTGGGGGTTTCTCTTCCTATTACTCTCCTACCTTCCCAGTGACCCACCGTCACCCCCGCTTGGAAGGAAGAGGAGCAGCAGGAAGGTAAGGAGCTCACAGCCCAGCCCCACAGAGAAAGA--CTCTCTCTTCTTTTCCTTCCCTCATTCCCACTTTTCCTAAGCAACTAGAGACCCTTC
i colAng1.NW_012115910v1       C 0 C 0
s saiBol1.JH378203               2611656 291 -   8192610 ACTTTGCACTTCAGATGG-AAAAAATGCTCCTTCCTCTGAAGAGCCCTAGTGCCACATGGCTGAGCCCCAGCTCCA-GCCCTGGGTGATGGATTTCATCCTCACTGGGGTGTGTGCCCTGGGGCTCCTCTTCCTATTACTTCCCTACCTCCCCAGTGACCCACCCTCACATCTGCCCTGGAGGAAGAGGAGTAGCGAGGAGGTAAGGAGCCCTCAGCCCAGCCCCACAGAGAAAAG--TTCTCTCTTCTTTTCCTCCCCTCAGGCTCACTTTTCCTAAGCCACGAGAGATGCTCC
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7145360 280 +   9895066 ACTTTGCACTTCAGATGG-AAAAAATGCTCTTTCCTCTGAAGAGCCCTAGTGCCACATGGCTGAGCCCCAGCTCCACTCCCTGGGTGATGGATTTCATCCTCATTGGAGTGTGTGCCCTGGGGCTCCTCTTCCTATTATTCCCCTACCTCCCCAGTGACCCA------------CCCTGGAGGAGGAGGAGCAGCGGGGAGGTAAGGAGCCCTCAGCCCAGCCCCACAGAGAAAGG--TTCTCTCTGCTTTTCCTCCCCTCATTTCCACTTTTCCTAAGCCATGAGAGACGCTCC
i cebCap1.NW_016107368v1       C 0 C 0
e manLeu1.NW_012104154v1         2137469 7109 +   2144893 I
e calJac3.chrUn_GL286352            4609   0 -     21860 C
e macFas5.chr15                106275291 10799 + 112612857 M

a score=4118438.000000
s hg38.chr15_KI270851v1_alt        45968 781 +    263054 TGCGATGGGAAA-TCTCATCATCCCTCT---------------AGGGAAGGGCAGAGCAGGCA---------GGGGTGGGAGTGGGCAGAGGATTCCATCCTCAGCTCCCAGACTATCTGTGACATGCGCGGGAGGCATCAGGGCAAAACCCAACACTGGACTCAGTGGCGAGGACCAGATCAGGAGAGGGGTGAGGTCTCTGTGGGAGGACAGGCCCCAGCTCTGGCTCATCAGCCCCTTTCCAAGGCAGGTGCCTGGGGGTCCAGGCTCCTCTGTGTG------GGGTGATCTGGGAGCTGTGCTGAAC--CCCTGAGAGCCTCCCGCTAGAGCCTGGATTCACGT----------------------------------------------------------CTGGCCTCCTCT------------GAAGCAGAATCCTACTGGCAGCTCAGAGGTGCCTGTAGGCCTGAGCCTGGGTATGCCTTCAGCGGAGGAGCAGGGACTGGGGATATCCAGGGTGGAGTCACACAGAAAACCCCTGCTTGCATTTCCCTAAGAAGGAAAACAGAAAACATTTCATCAATGGTAAACATGAGTAAA--AGAAACGCACGCAGAGCTCCCTGAGCTACAGGCAGAAAGCCGTGTCCTTCAAGAGCACTGCGTGTGTGCAGCTGGTCTGGGAAGAGGAGACTGAGAACTGGTCCCAGCCCCTCACCCTTGCTTGCCTCT-CAGCATCAAAGGAAGAGATAGGGGAGGCCCAGGAGCAGGAAGAAGATCCCAGCTCTGAATTGTGAGGCCCTACTAATCCCTGAGACTCCCCAGAGGTGACTGAGCATCGTCTGTCCCTGAGGGAATCATTTGCAGAGGCCTGAG-AGGGAAG
s panTro5.chr9                  65528804 844 + 116767853 TGCGATGGGAAA-TCTCGTCATCCCTCT---------------AGGGAAGGGCAAGGCAGGCA---------GGGGTGAGAGTGGGCAGAGGATTCCATCCCGAGCTC-------ATCTGTGGGGTGCACAGGAGGCGTCAGGGCAAAAACCAACACTGGACTCAGTGGCAAGGACCGGGTCAGGAGAAGGGTGAGGTCTCTATGGGAGGAGAGGCCCCAGCCCTGGCTCATCACCCCCTTCCTGGGGCAGGTGCCTGGGGGCCCAGCCTCCTCTGTGTGATCTAGGTGTGATCTGGGAGCTGTGCTGAGC--TCCTGAGAGCCTCCCACTAGAGCCTGGATTCGCCTGTGGCTGCACCCCGGCCACATGTGCTTTTTCCT-CCTTCACCACAGCCCCATGGTACCTTGGCCTCCTCTCCATTCTCATCCAAAGCAGAATCCTACTGGCAGCTCAGAGGCGCCTGTGGGCCTGAGCCTAGGTGTTCCTTGAGCGGAGGAGCAGGGACTGGGGACAGCCAGGTTGGAGTCACACAGACAACCCTTCCTTGCATTTCCCTAAGAAGGAAAACAGAAAACATTTCATTCACGGTAAACATGAGTAAA--A--AGCACACACAGAGCTCCCTGAGCTAGAGGCTGAGAGCCGTGTCCCTCATGAGCACTGCGTGTGTGCAGCTGGTCTGGGGAGAGGAGACTGAGAACTGGTCCCAGCCCCTCATCCTTTCTTGCCTCT-CAGCCTCAAAGGGAGAGAAGCGGGAGGTCCAGGAGCAGGAAGA---TCTCAGCTCTGAAAGGTGAGGCTCTGCTGCCCCTCGGGACTCCCCAGAGGTAACTGAGCTTTGCCTGTCCCTGAGGAAGTCATTTGCAGAGGCCTGAG-AGGGAAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87029453 844 + 138149186 TGCGATGGGAAA-TCTCGTCATCCCTCT---------------AGGGAAGGGCAAGGCAGGCA---------GGGGTGAGAGTGGGCAGAGGATTCCATCCCGAGCTC-------ATCTGTGGGGTGCACAGGAGGCGTCAGGGCAAAAACCAACACTGGACTCAGTGGCAAGGACCGGGTCAGGAGAAGGGTGAGGTCTCTATGGGAGGAGAGGCCCCAGCCCTGGCTCATCACCCCCTTCCTGGGGCAGATGCCTGGGGGCCCAGCCTCCTCTGTGTGATCTAGGTGTGATCTGGGAGCTGTGCTGACC--TCCTGAAAGCCTCCCACTAGAGCCTGGATTCGCCTGTGGCTGCACCCCGGCCACATGTGCTTTTTCCT-CCTTCACCACAGCCCCATGGTACCTTGGCCTCCTCTCCATTCTCATCCAAAGCAGTATCCTACTGGCAGCTCAGAGGCGCCTGTGGGCCTGAGCCTAGGTGTTCCTTGAGCGGAGGAGCAGGGACTGGGGACAGCCAGGTTGGAGTCACACAGACAACCCTTCCTTGCATTTCCCTAAGAAGGAAAACAGAAAACATTTCATTCACGGTAAACATGAGTAAA--A--AGCACACACAGAGCTCCCTGAGCTAGAGGCTGAGAGCCGTGTCCCTCATGAGCACTGCGTGTGTGCAGCTGGTCTGGGGAGAGGAGACTGAGAACTGGTCCCAGCCCCTCATCCTTTCTTGCCTCT-CAGCCTCAAAGGGAGAGAAGCGGGAGGTCCAGGAGCAGGAAGA---TCTCAGCTCTGAAAGGTGAGGCTCTGCTGCCCCTCGGGACTCCCCAGAGGTAACTGAGCTTTGCCTGTCCCTGAGGAAGTCACTTGCAGAGGCCTGAG-AGGGAAG
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           48882 781 -    142253 TGCGATGGGAAA-TCTCATCATCCCTCT---------------AGGGAAGGGCAGAGCAGGCA---------GGGGTGGGAGTGGGCAGAGGATTCCATCCTCAGCTCCCAGACTATCTGTGACATGCGCAGGAGGCATCAGGGCAAAACCCAACACTGGACTCAGTGGCGAGGACCAGATCAGGAGCGGGGTGAGGTCTCTGTGGGAGGACAGGCCCCAGCTCTGGCTCTTCAGCCCCTTTCCGAGGCAGGTGCCTGGGGGCCCAGCCTCCTCTTTGTG------GGGTGATCTGGGAGCTGTGCTGAACCACCCTGAGAGCCTCCCGCTAGAGCCTGGATTCACAT----------------------------------------------------------CTGGCCTCCTCT------------GAAGCAGAATCCTACTGGCAGCTGAGAGGTGCCTGTAGGCCTGAGCCTGGGTATGCCTTCAGCGGAGGAGCAGGGACTGGGGATATACAGGGTGGAGTCACACAGAAAACCCATGCTTGCATTTCCCTAAGAAGGAAAACAGAAAACATTTCATCAATGGTAAACATGAGTAAA--A--GAAACACGCAGAGCTCCCTGAGCTACAGGCAGAAAGCCGTGTCCTTCAAGATCACTGCGTGTGTGCAGCTGGTCTGGGGAGAGGAGACTGAGAACTGGTCCCAGCCCCTCACCCTTGCTTGCCTCT-CAGCATCAAAGGAAGAGATAGGGGAGGCCCAGGAGCAGGAAGAAGATCCCAGCTCTGAATTGTGAGGCCCTACTAATCCCTGAGACTCCCCAGAGGTGATTGAGCATCGTCTGTCCCTGAGGGGATCATTTGCAGAGGCCTGAG-AGGGAAG
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75912344 780 + 121039945 TGTGATGGAAAAGTCTCATCATCCCTCT---------------A-ggaagggcagggcaggca---------ggggtgggagtgggcagAGGATTCCATCCTCAGCTCCCAGACCATCTGTGACATGCACAGGAGGCATCAGGGCATAAACCAACACTGGACTCAGCGGTGAGGACGAGATCAGGAG-GGGGTGAGGTCTCTGTGGGAGGACAGGCCCCAGCCCTGGCTCATGAGCCCCTTTCCGAGGCAGGTGTCTGGGGGCCCAGCCTCCTCTGTATG------GGGTGATCTGGGAGCTGTGCTGAAC--CCCGGAGAGCCTCCCACTAGAGCCTGGATTCACAT----------------------------------------------------------CTGGTCTCCTCT------------GAAGCAGAATCCTACTGGCAGCTCAGAGGTGCCTGTAGGCCTGAGCCTGGGTGTGCCTTCAGCAGAGGTGCAGGGACTGGGGCTGTCCAGGGTGGAGTCACACAGAAAACTGCTGCTTGCATTTCCCTAAAAAGGAAAACAGAAAATATTTCATCAATGGTAAACATGAGTAAA--AGAAACGCACACACAGCTCCCTGAGCTAGAGGCAGAAAGCTGCGTCCTTCCTGAGCACTGCGTGTGTGCAGCTGGTCTGGGGAGAGGAGACTGAGAACTGGTCCCAGCCCCTCACCCTTGCTTGTCTCT-CAGCATCAAAGGAAGAGATAGGGGAGGCCCAGGAGCAGGAAGAAGATCCTAGCTCTGAATTGTGAGGCCCTACTAATCCCTGAGACTCCCCAGAGGTGATTGAGCATCGTCTGTCCCTGAGGAAGTCATTTGCAGAGGCCTCAG-AGGGAAG
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     48981 775 -     93100 TGTGATGGGAAA-TCTCATCATCCCTCT---------------AGGGAAGGGCAGGGCAGGCA---------GGGGTGGGAGTGGGCGGAGGATTCCATCCCCAGCTCCCAGACCATCTGTGACATGTGCAGGAGGCATCAGGGCAAAAACCAACACTGGACTCAGCCACGAGGACCAGATCAGGAGAGGGGTGAGGTCTCTGTGGGAGGACAGGCCCCAGCCCTGGCTCATCAGCCTCTTTCTGAGGCTGGTACCTGGGGGCCCAGACGCTTCTATGT------GGGGTGATCTGGGAGCTGTGCTGAGA--CCTTGAGAGCCTCCCGCCAGAGCCTGGATTCATGTCTGGC----------------------------------------------------------------------CTCCTTCGAAGAAGAATCCTACTGGCAGCTCAGAGGC-CCTGTAGGCCTGAGCCTGGGTCTGCCTTCAGCAGAGGAGCAGGGACTGGGGATATCCAGGGTGGAGTCACACACAAAACCCCCACTTGCATTTCCCTAAGAAGGAAAACAGAAAACATTTCATCAATG--AAACATAAGTAAAAGA--AACGCACACAGAGCTCCGTGAGCTACAGGCAGAAAGCTGTGTTACTCATGAGCACTGCGTGTGTGCAGCTGGCCTGGGAAGAGGACACTGAGAACTGGTCCCAGCCCCTCACTCTTGCTTGCCTCT-TACCATCAAAGGAAGAG-ATTGGGAGGCCCAGGAGCAGGAAGAAGATCCTAGCTCTGAAAGGTGAGGTTCTACTGCTCCGC-GGACTCCCCAGAGGTGACTGAGCATCACCTGTCCCTGAGGAAGTCATTTGCAGAGGCCTGAG-A-GGAAG
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macNem1.NW_012012133v1        22655916 855 +  28977278 CACGATGGGAAA-TCTCGTCATCCCTCT----------agggcagggcagggcagggcaggca---------gggGCGAGAGTGGGCGGAGGATTCCACCCCCAGCTCCCAGACCATCTGTGGGGTGCGCAGGGGGCATCAGGGCAAAAACCAACACCAGACTCAGTGGCGACGACCGGGTCAGGAGAGGAGTGAGGTCTCTGTGGGAGGAGAGGCCCCAGCCCTGCCTCATCACCCCCTTCCTGGGCCAGGTGCCTGGGGGCCCAGCCTCCTCTGTGTGATCTGGGTGTGATCTGGGAGCTGTGCTGAGC--CCCCGAGAGCCTCCCACAAGAGCCTGGATTCGCCTGTGGCTGCACCCCGGCCACAGCTGCTTCTT-CCTCCTTCACCACAACCCCATGGTCC-C-GGCCTCCTCTCCATTCTCTTCCGAAGCAGAATCCTACCGGCGGCTCAGAGGCGCCTGCAGACCTGAGCCTGGGTGTGCCTTCAGGGGAGGAGCAGGGACTGGGAACAGCCGGGGCGGAGCCACACAGAAAACCCCTCCTTGCATTTTCCTAAGAAGGAAAACGGAAAACATTTCATTCACGATAAACATGAGTAAA--A--AGCGCACACAGAGCTCCCTGAGCTAGAGGCAGGGCGCCGTGTCCTTCATGAGCACTGCATGTGTGCAGCTGGTCTGGGGAGAGGAGACTGAGAACTGGTCCCAGCCCCTCATCCTTTCTTGCCTCT-CAGCCTCAAAGGGAGAGAAGGGGGAGGTCCAGGAGCAGAAAGAAGATCTCAGCTCTGAAAGGTGAGGCTCTGCTGCTCCCCGGGACTCCCCAGAGGTGAC--AGCATCGCCTGTGCCCGAGGAAGTCATTTGCAGAGGCCTGAG-AGGGAAA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1925025 866 +   8072957 CACGATGGGAAA-TCTCGTCATCCCTCTagggcagggcagggcagggcagggcagggcaggca---------gggGTGAGAGTGGCCGGAGGATTCCACCCCCAGCTCCCAGACCATCTGTGGGGTGCGCAGGGGGCGTCAGGGCAAAAACCAACACCAGACTCAGTGGCGACGACCGGGTCAGGAGAGGAGTGAGGTCTCTGTGGGAGGAGAGGCCCCAGCCCTGCCTCATCACCCCATTCCTGGGCCAGGTGCCTGGGGGCCCAGCCTCCTCTGTGTGATCTGGGTGTGATCTGGGAGCTGTGCTGAGC--CCCCGAGAGCCTCCCACAGGAGCCTGCATTCGCCTGTGGCTGCACCCCGGCCACAGGTGCTTTTT-CCTCCTTCACCACAACCCCATGGTCC-CTGGCCTCCTCTCCATTCTCTTCCGAAGCAGAATCCTACCGGCAGCTCAGAGGCGCCTGCAGACCTGAGCCTGGGTGTGCCTTCAGGGGAGGAGCAGGGACTGGGAACAGCCAGGGTGGAGTCACACAGAAAACCCCTCCTTGCATTTTCCTAAGAAGGAAAACGGAAAACATTTCATTCACGATAAACATGAGTAAA--A--AGCGCACACAGAGCTCCCTGAGCTAGAGGCAGGGAGCCGTGTCCTTCATGAGCACTGCATGTGTGCAGCTGGTCTGGGGAGAGGAGACTGAGAACTGGTCCCAGCCCCTCATCCTTTCTTGCCTCT-CAGCCTCAAAGGGAGAGAAGGGGGAGGTCCAGGAGCAGAAAGAAGATCTCAGCTCTGAAAGGTGAGGCTCTGCTGCTCCCCGGGACTCCCCAGAGGTGAC--AGCATCGCCTGTCCCTGAGGAAGTCATTTGCAGAGGCCTGAG-AGGGAAA
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102642959 838 + 108555830 CATGATGGGAAA-TCTCGTCATCCCTCT---------------AAGGCACAGCAGGGCAGGCA---------GGGGTGAGAGTGGGCAGAGGATTCCACCCCCAGCTCCCAGACCATCTGTGGGGTGCGCAGGGGGCGTCAGGGCAAAAACCAACACCAGACTCTGTGGCGAGGACCGGGTCAGGAGAGGGGTGAGGTCTCTGTGGGAGGAGAGGCCCCAGCCCTGCCTCATCAACCCCTTCCTGGGACAGGTGCCTGGGGGCCCAGCCTCCTCTGTGT-----------GATCTGGGAGCTGTGCTGAGC--CCCCGAGAGCCTCCCACGAGAGCCTGGATTCGCCTGTGGCTGCACCCCGGCCACATGTGCTTTTT-CCTCCTTCACCACAACCCCATGGTCC-CGGGCCTCCTCTCCATTCTCCTCCGAAGCAGAATCCTACCGGCAGCTCAGAGGCGCCTGCAGACCTGAGCCTGGGTGTGCCTTCAGGGGAGGAGCAGGGACTGGAGACA-CCAGGGTGGAGTCACACAGAAAACCCCTCCTTACATTTTCCTAAGAAGGAAAACGGAAAACATTTCATTCACGATAAACATGAATAAA--A--AGTGCACACAGAGCTCCGTGAGCTAGAGGCAGGGAGCCGTGTCCTTCACGAGCACTGCATGTGTGCAGCTGGTCTGGG-AGAGGAGACTGAGAACTGGTCCCAGCCCCTCATCCTTTCTTGCCTCT-CAGCCTCAAAGGGAGAGAAGGGGGAGGTCCAGGAGCAGAAAGAAGATCTCAGCTCTGAAAGGTGAGGCTCTGCTGCTCCCCGGGACTCCCCAGAGGTGAC--AGCATCGCCTGTCCCCGAGGAAGTCATTTGCAGAGGCCTGAG-AGGGAAA
i chlSab2.chr12                C 0 C 0
s colAng1.NW_012115910v1         6783229 776 -   6934359 TGCGATGGGAAA-TCTCATCATCCCTCT---------------AGGGAAGGGCAGGGCAGGCA---------GGGGTGAGAGTGGGCGGAGGATTCCACCCCCAGCTCCCAGACCATCTGTGACATGTGCAGGAGGCATCAGGGCAAAAACCAACACTGGACTCAGCCGCAAGGACCAGATCAGGAGAGGGGTGAGGTCTCTGTGGGAGGACAGGCCCCAGCTCTGGCTCATCAGCCTCTTTCCGAGGCTGGTACCTGGGGGCCCAGACACTTCTATGT------GGGGTGATCTGGGAGCTGTGCTGAGA--CCCTGAGAGCCTCCCGCCAGAGCCTGGATTCATGTCTGGC----------------------------------------------------------------------CTCCTTCGAAGCAGAATCCTACTGGCAGCTCAGAGGCACCTGTAGGCCTGAGCCTGGGTCTGCCTTCAGCAGAGGAGCAGGGACTGGGGATATCCAGGGTGGAGTCACATACAAAACCCCCACTTATATTTCCCTAAGAAGGAAAACAGAAAACATTTCATCAATG--AAACATGAGTAAAAGA--AACGCACACAGAGCTCCCTGAACTACAGGCAGAAAGCCGTGTTACTCATGAGCACTGCGTGTGTGCAGCTGGCCTGGGGAGAGGAGACTGAGAACTGGTCCTAGCCCCTCATTCTTGCTTGCTTCT-TACCATCAAAGAAAGAG-ATTGGGAGGCCCAGGAGCAGGAAGAAGATCCTAGCTCTGAAAGGTGAGGCTCTACTGCTCCGC-GGACTCCCCAGAGGTGACTGAGCATCGCCTGTCCCTGAGGAAGTCATTCGCAGAGTCCTGAG-AGGAAG-
i colAng1.NW_012115910v1       C 0 C 0
s calJac3.chrUn_GL286352            4609 746 -     21860 TGTGATGGGAAA-TCTCATGGTCCCTC----------------AGGGCAGGGCAGTGCAGGA----------GGGGTGAGAGTGTGCAGAGGATTCCATGCCCAGCTCCCAGACCATCTGTGGGGTG-------GGCTTCAGGGCACAAACCAACACTGGGCTCAGTGGCGAGGACAGGCTCAGGAGAGGGGTGAGGGCTCTGTGGGA-AACAGGCCCAAGCCCTGGCTCATCAGCC-CTTCCTGGGGCAGGTGCT--GGGGCCCAGCCTCCTCTGTGTG------GGGTGATCT-GGAGCTGTGCTGAGC--CCCTGAGAGCCTCCCAC-AGAGCCTGGACTCACCT----------------------------------------------------------CTGGACTCA---------------GAAGCAGAATCCTATTGGCAGCTCAGGG--------------GAGCCTGGGTGTTCCCTGATCGGAGGAGCAGGGACTGGGGA-GTCCAGGGTGGAGTCACACAGAAAACCC-TCCTAGCAGTTCTGTAAGTAGGAAAACAGAAAACATTTCATGCAGGGTAACCATGGGTAAA--AGAAATGCACACGGAGCTCCCTGAGCTAGAGGCAGAAAGCCAAGTCCTTCATGAGCACAGCATGAGTGCAGCTGGTCCGGGGAGAGGAGAGTGAGAACTGGTCCCAGCCCCTCACCCTTTCTTGCCTCTCCAGGATCAGAGGAAGAGAAGGGGAAGATCCAGGAGCAGGAAGAAGATCCCAGCTCTGAAAGGTGAGGCTTTGCCGGTCCCTGGGACTCCCCAGAGGTGACTGAG-ATCGCCTGGCCCTTA-GAAGTCATTTGCAGAGGCCTGAG-AGGGAAG
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2611947 778 -   8192610 TGCAATGGGAAA-TCTCATGGTCCCTc----------------agggcagggcagggcagggcagggcaggTGGGGTGAGAGTGCACAGAGGATTCCATGCCCAGCTCCCAGACCATCTGTGGGGTG-GCAGGAGTCTTCAGGGCACAAACCAACACCAGGCTCAGCGGCGGGTACTGACTCAGGAGAGGTGTGAGGGCTCTGTGGGA-GACAGGCCCCAGCCCTGGCTCATCAGCC-CTTCCCAGGGCAGGTGCT--GGGGCCCAGCCTCCTCTGTATG------GGGTGATCT-GGAGCTGTGCTGAGC--CCCTGAGAGCCTCCCAC-AGAGCCTAGACTCACCT----------------------------------------------------------CTGGCTTTG---------------GAAACAGAATCCTACTGGCAGCTCAGAGCAGCCTGAGGGCCTGGGCCTGGGTGTTCCCTGAGCGGAGGAGCAGGGACTGGGGACATCCAGGGTGGAGTCACACCGAAAACCC-TCCTGGCATTTCTGTAAGTAAGAAAACAGAAAACATTTCATGCAGGGTAACCATGGGTGAA--AGAAACGCACACAGAGCTCCCTGAGCTAGAGGCAGAAAG-CGAGTCCTTCATGAGCACGGTGTGGGTGCAGCTGGTCTGGGGAGAGGAGAGTGAGAACTGGTCCCAGCCCCTCACCCTTTCTTGCCTCT-CAGGATCAGAGGAAGAGAAGGGGAAGATCCAGGAGCAGGAAGGAGATCCCAGCTCTGAAAGGTGAGGCTCTGCTGGTCCCTAGGACTCCCCGGAGGTGACTGAGCATCGCCAGGCCTGTAGGAAGTCATTTGCAGAGGCCTGAGAAGGGAAG
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7145640 746 +   9895066 TGCGATGGGAAA-TCTCATGGTCCCTc----------------aggacagggcagggcagggcagggcgggcgggATGAGAGTGCACGGAGGATTCCATGCCCAGCTCCCAGACCATCTGTGGGGTGGGCAGGAGGCTTCAGGGCACAAACCAACACCGGGCTCAGCGTCGAGGACCGGCTCAGGAGAGGGGCGACGGCTCTGTGGGA-GACA------------GGCTCATCAGCC-CTTCCTGGGGCAGGTGCT--GGGGCCCAGCCTCCTCTGTGTG------GGGTGATCT-GGAGCTGTGCTGAGC--CCCCGAGAGCCTCCCAC-AGAGCCTGGACTCACCT----------------------------------------------------------CTGG---CG---------------GAAGCAGAATCCTACTGGCAGCTCAGAGGAGCCTGGGGGCCTGGGCCTGGGTGTTCCCTGAGCGGAGGAGCAGGGACTGGGGACATCCAGGGTGGAGTCACACAGAAAACCC-TCCTAGCATGTCTGTAAGTAAGAAAACAGAAAA-ATTTCATGCAGGGTAACCATGGGTGAA--AGAAACGCACACAGAGCTCCCTGAGCTAGAGACAGAAAGCCGAGTCCTTCATGAGCACAGTGTGAGTGCAGCTGGTCTGGGGAGAGGAGAGTGAGAACCGGTCCCAGCCCCTCACCCTTTCTTGCCTCT-caggatcagaggaagagaaggggaagatccaggagcaggaagcagATCCCAGCTCTGAAAGGTGA------------------GACTCCCCAGAAGTGACTGAGCATTGCCTGGCCCTAAGGAAGTCATTTGCAGAGGCCTGAGAAGGGAAG
i cebCap1.NW_016107368v1       C 0 C 0
e manLeu1.NW_012104154v1         2137469 7109 +   2144893 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=1981587.000000
s hg38.chr15_KI270851v1_alt        46749 314 +    263054 CTCCTGGGAGGGAAATCAGAACCCGGGG-CCTCCTCATATTCCCTGTGGGAATGAAGCCATGGGCCCGGG-AACC----------------------------------------------------------------------GGTATTGCCCATAAGGGGGCGCTGTGGGGAAGGGACCAAGGCCTGCCAGGATATGGGGGGAGGTCAGGGAGACCCCAGGTCCATGTGGACAGCTGTTCTCCTCGGCCATGGCTGACTCTTCTT-AGAGACCACCCC-ATCCACTCTccccacaagatggttgtgacacccatgaggggttgtacatggaagcactttttgcaaatgacaaa-gttctgcacaaTGCACACCTTGCTGTCACCAT
s panTro5.chr9                  65529648 312 + 116767853 CTCCTGGGAGAGAAATCAGAACCTGCGG-CCTCCTCAGATTCCCTGCGGGAATGAAGCCACGGGCCTGGG-A-CC----------------------------------------------------------------------GGTATTGCCCATAAGGGGGCGGTGTGGGGAAGGGACCAAGGCCTGCCTGGATATGGGGGGAGGTCAGGGAGGCTCCAGGTCCATGTGGACAGCTGTTCACCTCAGCAATGGCTGACTCCTCTT-TGAGACCACCC--ATTtgctctcccaacaagatggttgtgacaccgatgagggggtggacgtggaagcactttttgcaaatgacaaa-gtgctgcacaGTGGAAACCTTCCTGTCACCAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87030297 312 + 138149186 CTCCTGGGAGAGAAATCAGAACCTGCGG-CCTCCTCAGATTCCCTGCGGGAATGAAGCCACGGGCCTGGG-A-CC----------------------------------------------------------------------GGTATTGCCCATAAGGGGGCGGTGTGGGGAAGGGACCAAGGCCTGCCTGGATATGGGGGGAGGTCAGGGAGGCTCCAGGTCCATGTGGACAGCTGTTCACCTCAGCAATGGCTGACTCCTCTT-TGAGACCACCC--ATTtgctctcccaacaagatggttgtgacaccgatgagggggtggacgtggaagcactttttgcaaatgacaaa-gtgctgcacaGTGGAAACCTTCCTGTCACCAT
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           49663 314 -    142253 CTCCTGGGAGGGAAATCAGAACCTGGGG-CCTCCTCAGATTCCCTGTGGGAATGAAGCCATGGGCCCGGG-AACC----------------------------------------------------------------------GGTATTGCCCATAAGGGGGCGGTGTGGGGAAGGGACCAAGGCCTGCCAGGATATGGGGGGAGGTCAGGGAGACTCCAGGTCCATGTGGACAGCTGTTCTCCTCGGCCATGGCTGACTCTTCTT-AGAGACCACCCC-GTCCACTCTccccacaagatggttgtgacacccatgaggggatgtacatggaagcactttttgcaaatgacaaa-gttctgcacaGTGCACATCTTGCTGTCACCAT
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75913124 312 + 121039945 CTCCTGGGAGGGAAATCAGAACCCGGGG-CCTCCTCAGATTCCCTGTGGGAATGAAGCCATGGGCCCAGG-AACT----------------------------------------------------------------------GGTATTGCCCATAAGGGGGTGGTGTGGGGAAGGGACGAAGGCCTGCCAGGATCTGGGGGGAGGTCAGGGAGGCCCCAGGTCCATGTGGACAGCTGTTCTCCTCGGCCATAGCTGACTCTTCTT-AGAGACCACCCC-GTCCACTGTCCCCACAAGATGGTTGTGACACCCATGAGGGGCTGTACATGGAAACACTTTTTGCAAATGACAAA-GTTCTG--CAGTGCACACCTTGCTGTCACCAT
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     49756 317 -     93100 CTCCTGGGAGGGAAATCAGAACCCGGGG-CCTCCTCAGATTATCTGTGGGAATGAAGCCATGGGCCCGGGAA-CC----------------------------------------------------------------------GGTATTGCCCATAAGGGGGCGCTGTGGGGAAGGCACCAAGACCTGCCAGGATATGGGCGGAGGTCAGGGAGGCTCCAGGTCCATGCGGACAGCTGTTTTCCTCGGCCATGGCTGACTCTTCTTAAGAGACCACCcctgtccgctctccccactagatggctgtgacacccatgagggggtgtacatggaagcactctttgcaaatgacaaaggttctgtacaGTGCACACCTTGCTGTCACCAT
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macNem1.NW_012012133v1        22656771 303 +  28977278 CTCCTGGGAGGGAAATCGGAACCTGGGG----CCTCAGATTCCCTGTGGGAATGAAGCCGGGGGCCTGGG-A-CC----------------------------------------------------------------------GGGATTGCCCATAAGGAGGCGGTGTGGGGAAGGGACCAAGGCCTGCCGGGATATGGGCGGAAGTCAGGGAGGCTCGAGGTCCATGTGGACAGCTGTGTACCTCGGCCATGGCTGACTCCTCTT-TGAGACCACCC--GTTTGCTCTCCCAACAAGATGGTTGTGACACCCATGAAGGGG------TGGAAGCGCTTTTTGCAAATGACAAA-ATGCTGCACAGTGGACACCTTCCTGTCACCAT
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1925891 312 +   8072957 CTCCTGGGAGGGAAATCGGAACCTGGGG-CCTCCTCAGATTCCCTGTGGGAATGAAGCCGGGGGCCTGGG-A-CC----------------------------------------------------------------------GGTATTGCTCATAAGGGGGCGGTGTGGGGAAGGGACCAAGGCCTGCCGGGATATGGGCGGAGGTCAGGGAGGCTCCAGGTCCATGTGGACAGCTGTGTACCTCGGCCATGGCTGACTCCTCTT-TGAGACCACCC--GTTTGCTCTCCCAACAAGATGGTTGTGACACCCATGAAGGGGTGGACGTGGAAGCACTTTTTGCAAATGACAAA-GTGCTGCACAGTGGACACCTTCCTGTCACCAT
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102643797 312 + 108555830 CTCCTGGGAGGGAAATCAGAACCTGGGG-CCTCCTCAGATTCCCTGCGGGAAAGAAGCCAGGGACCTGGG-A-CC----------------------------------------------------------------------GGTATTGCCCATAAGGGGGCAGTGTGGGGAAGGGACCAAGGCCTGCTGGGATATGGGCGGAGGTCAGGGAGGCTCCAGGTCCATGTGGACAGCTGTGTACCTCGGCCATGGCTGACTCCTCTT-TGAGACCACCC--GTTTGCTCTCCCAACAAGATGGTTGTGACACCCATGAAGGGGTGGACGTGGAAGCGCTTTTTGCAAATGACAAA-GTGCTGCACAGTGGACACCTTCCTGTCACCAT
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012104154v1         2144578 311 +   2144893 CTCCTGGGAGGGAAATCGGAACCTGGGG-CCTCCTCAGATTCCCTATGGGAATGAAGCTGGGGGCCTGGA-A-CC----------------------------------------------------------------------GGTATTGCCCATAAGGGGGCGGTGTGGGGAAGGGACCAAGGCCTGCCGGGATATGGGCGGAGGTCAGGGAGGCTCCAGGTCCACGTGGACAGCTGTGTACCTCGGCCATGGCTGACTCCTCTG-T-AGACCACCC--GTTTGCTCTCCCAACAAGATGGTTCTGACACCCATGAAGGGGTGGACATGGAAGCACTTTTTGCAAATGACAAA-GTGCTGCACAGTGGACACCTTCCTGTCATCAT
i manLeu1.NW_012104154v1       I 7109 N 0
s colAng1.NW_012115910v1         6784005 315 -   6934359 CTCCTGGGAGGGAAATCAGAACCCGGGG-CCTCCTCAGATTATCTGTGGGAATGAAGCCAGGGGCCCGGGAA-CT----------------------------------------------------------------------GGTATTGCCCACAAGGGGGCGCTGTGGGGAAGGCACCAAGAACTGCCAGGATATGCGGGGAGGTCAGGGAGGCTCCAGGTCCATGGGGACAGCTGTTCTCCTCGGCCATGGCTGACTCTTCTT-AGAGACCACCCC-GTCCGCTCTCCCGACTAGATGGTTGTGACACCCATGAGGGGGTGTACATGGAAGCACTTTTTGCAAATGACAAAAGTTCTGCACAGTGCACACCTTGCTGTCACCAT
i colAng1.NW_012115910v1       C 0 C 0
s calJac3.chrUn_GL286352            5355 378 -     21860 CTGCT-GGAAGGAAGTCAGACCCCGGGGTCCTCCTCAGATTCCCTGCTGGAATGAAGCCATGGGGGCCGG-A-CCTGATATGGCCCATANNNNNNNNNNGGCCTCCTCAGATTTCTGGTGGAATGAAGCCAAGGGGGCCAGACTTGATATGGCCCATAAGAAG-----GTGAGGAAGGGACCAGTCCCTGCCTGGGTAGCGGGGGAGGTCAAGGAGGCTCCAGGTCCATGTGGACAGCTGTTCACCGTGGCTATGGCTGACTCCTATT-AGAGACCACACCAGTCCACTCTCCCCACAAGATGG-TGTGACACCCATGAGGGGGTGTCTGTGGAAGCCCTGTCTGCAAATGACAAA-GTGCTGCATGGTGCACACCTTGCTGTCACCAT
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2612725 300 -   8192610 CAGCCGGGAGGGAAGTCGGACCCTGGGG-CCTCCTCAGATTCCCTGCTGGAATGAAGCCATGGAGGCCGG-A-CC---------------------------------------------------------------------TGGTATGGCCCATAACGGG-----GTGGGGAAGGGACCAATGCGTGCCTGGGTATGGCG---------GGAGGCTCCAGATCCATGTGGACAGCTGTTGACCTCGGCTAAGGCTGACTCCTCTT-AGAGACCACCCCAGTCCGCTCTCCCCACAAGATGG-TATGACACCCATGAGGAGGTGTCTGTGGAAGCCCTTTCTGCAAATGACAAA-GTGCTGCATGGTGCACACCTTGCTGTCACCAT
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7146386 295 +   9895066 CTGCTGGGAGGGAAGTCAGACCCCGGGG-CCTCCTCAGATTTCCTGCTGGAATGAAGCCATGGAGGCCGG-A-CC---------------------------------------------------------------------TGGTATGGCCCATAAGGAG-----TTGGGGAAGGGACCAATGCCTGCCTGGGTATGGGG-GAGGTCAGGGAGGCTCCAGGTCCATGTGGACAGCTGTTCACCTCGGCTATGGCTGACTCCTCTT-AGAGAC------------CTCTCCCCACAAGATGG-TGTGACACCCATG-GGGGGTGTCTGTGGAAGCCCTTTCTGCAAATGACAAA-GTGCTGCACGGTGCACACCTTGCTGTCACCAT
i cebCap1.NW_016107368v1       C 0 C 0
e macFas5.chr15                106275291 10799 + 112612857 M

a score=598489.000000
s hg38.chr15_KI270851v1_alt        47063 102 +    263054 TGGGGCCATGTGGCCTTGGACACAGATGCATGGGCTTCAGGGTCTAGTTCCCCATGGTGTCCCCTAAAGAGACATCCACCACTCAGCCTCCCATGAGGTTCG
s panTro5.chr9                  65529960  98 + 116767853 TGGGGCCATGTGGCCTCGGACACAGATGCGAGGGCTTCAGGGTCTAGTCCCCCATGGTGTCCCCTAAAAAGACATCCAC---TCAGCCTCC-ATGAGGTTCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87030609  98 + 138149186 TGGGGCCATGTGGCCTCGGACACAGATGCGAGGGCTTCAGGGTCTAGTCCCCCATGGTGTCCCCTAAAAAGACATCCAC---TCAGCCTCC-ATGAGTTTCC
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           49977 102 -    142253 TGGGGCCATGTGGCCTTGGACACAGATGCATGGGCTTCAGGGTCTAGTTCCCCATGGTGTCCCCTAAAGAGACATCCACCACTCAGCCTCCCATGAGGTTCG
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75913436  99 + 121039945 TGGGGCCATGAGGCCTTGGACACAGACGCATGGGCTTCAGGGTCTAGTTCCCCATGGTGTCCCCTAAAGAGACATCCAC---TCAGCCTCCCATGAGGTTCA
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     50073  99 -     93100 TGGGGCCATGTGGCCTTGGACACAGATGCGTGGGTTTCAGGGTCTAGTTCCCCATGGTGTCCCCTAAAGAGACAGCCAC---TCAGCCTCCTGTGAAGTTTG
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macNem1.NW_012012133v1        22657074  98 +  28977278 CAGGGCCATGTGTCCTTGGACACAGATGTGTGGGCTTCAGGGTCTAGTTCCCTGTGGTGTCCCCTAAAGAGACATCCAC---TCAGCCTCC-GTGAAGTTCC
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1926203  98 +   8072957 CAGGGCCATGTGGCCTTGGCCACAGATGTGTGGGCTTCAGGGTCTAGTTCTCTGTGGTGTCCCCTAAAGAGACATCCAC---TCAGCCTCC-GTGAGGTTCC
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102644109  98 + 108555830 CAGGTCCATGTGGCTTTGGCCACAGATGTGTGGGTTTCAGAATCTAGTTCCCTGTGGTGTCCCCTAAAGAGACATCCAC---TCAGCCTCC-GTGAGGTTCC
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1287934  98 -   1339302 CAGGGCCATGTGGCCTTGGCCACAGATGTGTGGGCTTCAGGGTCTAGTTCTCTGTGGTGTCCCCTAAAGAGATATCCAC---TCAGCCTCC-GTGAGGTTCC
i manLeu1.NW_012105664v1       N 0 C 0
s colAng1.NW_012115910v1         6784320  99 -   6934359 TGGGGCTATGTGGCCTTGGACACAGATGCGTGGGTTTCAGGGTCTAGTTCCCCATGGTGTCCCATAAAGAGACAGCCAC---TCAGCCTCCTGTGAAATTTG
i colAng1.NW_012115910v1       C 0 I 30
s calJac3.chrUn_GL286352            5733  75 -     21860 CGGGGTCAGGTGGTCTTGGACACAGATGCGTGGGCTTCAGGGTCTAATCCCCCACGGTGGCCC-TAAAGAGGCATC--------------------------
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2613025  98 -   8192610 CAGGGTCAGGTGGCCTTGGACACAGATGCATGGGCTTCAGGGTCTTCTCCCCCATGGTGGCCT-TAAAGAGACATCCAC---GCGGCCTCCCGTGGGGTTCC
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7146681  98 +   9895066 CGGGATCAGGTGGCCTTGGACACAGATGCGTGGGCTTCAGGGTCTAATCCGCCTTGGTGGCCT-TAAAGAGACATCCAC---CCAGCCCCCCGTAGGGTTCC
i cebCap1.NW_016107368v1       C 0 C 0
e macFas5.chr15                106275291 10799 + 112612857 M

a score=84380.000000
s hg38.chr15_KI270851v1_alt        47165 14 +    263054 CTGGCACCGCCCTC
s panTro5.chr9                  65530058 14 + 116767853 CAGGCACCGCCCTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87030707 14 + 138149186 CAGGCACCGCCCTC
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           50079 14 -    142253 CTGGCACCGCCCTC
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75913535 14 + 121039945 CTGGCACCGCCCTC
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     50172 14 -     93100 CTGGCACTGCCCTC
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macNem1.NW_012012133v1        22657172 14 +  28977278 CAGGCACCGCCCTC
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1926301 14 +   8072957 CAGGCACCGCCCGC
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102644207 14 + 108555830 CAGGCACCGCCCTC
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1288032 14 -   1339302 CAGGCACCGCCCTC
i manLeu1.NW_012105664v1       C 0 M 742
s calJac3.chrUn_GL286352            5808 10 -     21860 ----CACCGGCCTC
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2613123 14 -   8192610 CAGGCACCGCCTTC
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7146779 14 +   9895066 CAGGCACCGTCCTC
i cebCap1.NW_016107368v1       C 0 C 0
e colAng1.NW_012115910v1         6784419 30 -   6934359 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=16492.000000
s hg38.chr15_KI270851v1_alt        47179 7 +    263054 CCCGCCA
s panTro5.chr9                  65530072 7 + 116767853 TCCACCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87030721 7 + 138149186 TCCACCA
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           50093 7 -    142253 CCCGCCA
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75913549 7 + 121039945 CCCGCCA
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     50186 7 -     93100 CCCACCA
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macNem1.NW_012012133v1        22657186 7 +  28977278 TCCACCA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1926315 7 +   8072957 TCCACCA
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102644221 7 + 108555830 TCCACCA
i chlSab2.chr12                C 0 C 0
s calJac3.chrUn_GL286352            5818 6 -     21860 CCCACA-
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2613137 6 -   8192610 CCCACG-
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7146793 6 +   9895066 CCCACG-
i cebCap1.NW_016107368v1       C 0 C 0
e colAng1.NW_012115910v1         6784419 30 -   6934359 I
e manLeu1.NW_012105664v1         1288046 742 -   1339302 M
e macFas5.chr15                106275291 10799 + 112612857 M

a score=1590973.000000
s hg38.chr15_KI270851v1_alt        47186 276 +    263054 TAACTCTGTCTCCTTACTTCCAGCTTGCAGAATCCTCCTGAGGGAGCTGGAGGAGACTCAGGACCTGACCAACCTTCTGGAAAGATGAGA----TTCCCCTTCTCTCCATGTCGTCCTTTCTACCAGGGCCTCTGAGGCAGCCCCAGGGTCCAGTGTTGACCTGGGAGGGGGAGGTCCTGGGAAGAGG-CGGGAGTGGACTGAAGCCCTGGG-CAGGCACAGACAGAGCTCTGTGAAGCCAGCAGTGGGGGAGGTGGAGGAGCTGTGGGCACCAGGTGCCCA
s panTro5.chr9                  65530079 282 + 116767853 TAACCCTGTCTCCTGATTTCCAGCTTGCAGAATCCTCCTGAGGGAGCTGGAGGAGACTCGGGACCTGAACTACCTTCTGGAAAGGTGAGGAGCTTCCCCCTTCTGTCCCTGTCCTCCTTCCTACCAGGGCCTCTGATGCAACCCTACGGCCTGGTGGTGATCTGGGAGGGGGAGGTCCCGGGAAGGGGACAGGAGGGGACTGAAGCCCTGGGGCAGGCTTAGGCAGAGCTTTATGAAGTCAGCAGTGGGGGAGGTGGAGGAGCCGGGGGCCCCAGGTGCCCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87030728 282 + 138149186 TAACCCTGTCTCCTGATTTCCAGCTTGCAGAATCCTCCTGAGGGAGCTGGAGGAGACTCGGGACCTGAACTACCTTCTGGAAAGGTGAGGAGCTTCCCCCTTCTGTCCCTGTCCTCCTTCCTACCAGGGCCTCTGATGCAACCCTACGGCCTGGTGGTGATCTGGGAGGGGGAGGTCCCGGGAAGGGGACAGGAGGGGACTGAAGCCCTGGGGCAGGCTTAGGCAGAGCTTTATGAAGTCAGCAGTGGGGGAGGTGGAGGAGCCGGGGGCCCCAGGTGCCCA
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           50100 276 -    142253 TAACTCTGTCTCCTTACTTCCAGCTTGCAGAATCCTCCTGAGGGAGCTGGAGGAGACTCAGGACCTGACCAACCTTCTGGAAAGATGAGA----TTCCCCTTCTCTCCATGTCGTCCTTTCTACCAGGGCCTCTGAGGCAGCCATAGGGTCCAGTGTTGACCTGGGAGGGGGAGGTCCTGGGAAGAGG-CAGGAGTGGACTGAAGCCCTGGG-CAGGCACAGACAGAGCTCTGTGAAGCCAGCAGTGGGGGAGGTAGAGGAGCTGTGGGCACCAGGTACCCA
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75913556 280 + 121039945 TAACTCTGTCTCCTTACTTCCAGCTTGCAGAATCCTCCTGAGGGAGCTGGAGGAGACCCAGGACCTGACCTGCCTTCTGGAAAGATGAGGAGA-TTCCCCTTCTCTCCCTGTGCTCCTTTCTACCAGGGCCTCTGAGGCAGCCTTAGGGCCTGGTGGTGATCTGGGAGAGGGAGGTCCTGGGAAGAGG-CAGGAGTGGACTGAAGCCCTGGGGCAGGCATAGACAGAGCTTTGTGAAGCCAGCAGTGGGGGAGGTGGAGGAGCCGTGGGCACCAGGTGCCCA
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     50193 282 -     93100 TAACCCCGTCTCCTGACTTCCAGCTTGCAGAATCCTCCTGAGAGAGCTGGGGGAGACTGGGGGCCTGACCAACCCTCTGGAAAGATGAGGAGACTCCCCCTTCTCTCCACGTCCTCCTTTATACCAGGGCCTCTGATGCAACCCTAGGGCCTGGTGGCGACCTGAGAGGGGGAGGTCCTGGAAAGGGAACAGGAATGGACGGAAGCCTTGAGGCTGACATAGACAGAACTGTGTGAAGTCAGCAGTGGGGGAGGTGGAGGAGCTGTGGGCACCAGGTGCCCA
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macNem1.NW_012012133v1        22657193 282 +  28977278 TAACCCTGTCTCCTGACTTCCAGCTTGCAGAAACCTCCTGAGGGAGCTGGAGGAGACTCGGGACCTGAACAGCCTTCTGGAAAGGTGAGGAGCTTCCCCCTTCTCTCCATGTCCTCCTTCCTACCAGGGCCTCTGATGCAACCCTAGGGCCTGCTGGTGATCTGGGAGGGAGAGGTCCTGGGAAGAGGAGAGGAGAGGACTGAAGCCCTGGGGCAGGCTTAGGCAGAGCTTTGTGAAGTCAGCAGTGGGGGAGGTAGAGGAGCTGTAGGCCCCAGGTGCCCA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1926322 282 +   8072957 TAACCCTGTCTCCTGACTTCCAGCTTGCAGAAACCTCCTGAGGGAGCTGGAGGAGACTCGGGACCTGAACAACCTTCTGGAAAGGTGAGGAGCTTCCCCCTTCTCTCCATGTCCTCCTTCCTACCAGGGCCTCTGATGCAACCCTAGGGCCTGCTGGTGATCTGGGAGGGAGAGGTCCTGGGAAGAGGAGAGGAGAGGACTGAAGCCCTGGGGCAGGCTTAGGCAGAGCTTTGTGAAGTCAGCAGTGGGGGAGGTGGAGGAGCTGTAGGCCCCAGGTGCCCA
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102644228 282 + 108555830 TAACCCTGTCTCCTGACTTCCAGCTTGCAGAATCCTCCTGAGGGAGCTGGAGGAGACCCGGGACCTGAACCACCTTCTGGAAAGGTGAGGAGCTTCCCCCTTCTCTCCATGTCCTCCTTCCTACCAGGGCCTCTGATGCAACCCTAGGGCCTGCTGGTGATCTGGGAGGGAGAGGTTCTGGGAAGAGGAGAGGAGAGGACTGAAGCCCTGGGGCAGGCTTAGGCAGAGCTTTGTGAAGTCAGCAGTGGGGGAGGTGGAGGAGCTGTAGGCCCCAGGTGCCCA
i chlSab2.chr12                C 0 I 22
s colAng1.NW_012115910v1         6784449 262 -   6934359 TAACCCCGTCTCCTAACTTCCAGCTTGCAGAATCCTCCTGAGGGAGCTGGGGGAGACTGGGGGCCTGATCAACCCTCTGGAAAGATAAGGAGACTCCCCCTTCTCTCCATGTCCTCCTTTATACCAGGGCCTCTGATGCAACCCTGGGGCCAGGTGGTGACCTGGGAGGGGGAGGTCCTGGAAAGGGAACAGGAATGGACTGAAGCCCTGAGGCTGACATAGACAGAACTTTGTGAAGTCAGCAGTGGGGGAGGTGGAGGAG--------------------
i colAng1.NW_012115910v1       I 30 C 0
s calJac3.chrUn_GL286352            5824 277 -     21860 TAACCCTGCCTCCCGACTTCCAGCTTGCA-AACCCTCCTGAGGGAGCTGGAGGAGACTCGGGACCTGTCCTATCTTCTGGAAAGGTGAGGAGT-GTCCCCTTTTTCCCATGTCCTCCTTCTTATCAGGGCCTCTGAGGTAACCCTAGGGTCTGGTGGAGACTTGGGAGGG-GAGGCCCTGGGAAGGGGACAGGAGGGGACTGAAGCCCTGGGGTGGACATAGGCAGAGCTTTGTGAAGCCAGCCGTGGGGGAGGCGGAGGG-CTGTGGGACCCAGGTGCCA-
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2613143 278 -   8192610 TAACCCCGCCTCCTGACTTCCAGCTTGCAGAATTCTCCTGAGGGAGCTGGAGGAGACTCGGGACCTGTCCTGTCTTCTGGAGAGGTGAGGAGC-GTCCCCTTCTCCCCATGTCCTCCTTCCTACCAGGGCCTCAGAAGTAACCCTAGGGCCTGGTGGAGACCTGAGAGGG-GAGGCCCTGGGAAGGGGACAGGAGGGGACTGAAGCCCTGGGGTGGACATAGGCAGAGCTTTGTGAAGTCAGCCGTGGGGGAGGTAGAGGG-CTGTGGGCCCCAGGTGCCA-
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7146799 279 +   9895066 TAACCCCGCCTCCTGACTTCCAGCTTGCAGAATCCTTCTGAGGCAGCTGGAGGAGACTCGGGACCTGTCCTGTCTTCTGGAGAGGTGAGGAGC-GTCCTTTTCTCCCCATGTCCTCCTTCCTACCAGGGCCTCTGAAGTAACCCTAGGGCCTGGTGGAGACCTGGGCGGG-GAGGCCCTGGGAAGGGGACAGGAGGGGACTGAAGCCCTGGGGCGGGCATAGGCAGAGCTTTGTGAAGTCAGCCGTCGGGGAGGTGGAGGGACCGTGGGCCCCAGGTGCCA-
i cebCap1.NW_016107368v1       C 0 C 0
e manLeu1.NW_012105664v1         1288046 742 -   1339302 M
e macFas5.chr15                106275291 10799 + 112612857 M

a score=968950.000000
s hg38.chr15_KI270851v1_alt        47462 211 +    263054 GCCCTCCCGACCTCCCAACCCCACCTGCCCCTGGCTGCAGCTTGTGCCT--TGT-----GCAGCCACCTGAGAAAGCTCACTGGGGAGGGTGGCTCCCATCTGCCCTTAGGTGGAGAGCCCT-GGGTGATATGTACAAACCAGCTCCTGCTAAGGCCCACCAGCCGCATAGGAAATGCATGCAAGATCCATCTCCTGACAGCTTGTCCCCAAGGACTCC
s panTro5.chr9                  65530361 219 + 116767853 CCCCTCCCAGCTTCCCGGCCCCATCTACCCCTGGCTGCAGCTTGTGCCTCTTGTCTCCTGCAGCCACCTGAGGAAGCTCGCTGGCGAAGGCAGCTCCCACCTGCCCTTAGGTGGAGACCCCCCGGGGGACGTGTGTAAACCAGTGCCTGCTAAGGCCCACCAGCCACATGGGAAATGCATGCAAGATCTGTCTCCTGCCAGCTTGTCCCCACCAGCTCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87031010 219 + 138149186 CCCCTCCCAGCTTCCCGGCCCCATCTACCCCTGGCTGCAGCTTGTGCCTCTTGTCTCCTGCAGCCACCTGAGGAAGCTCGCTGGCGAAGGCAGCTCCCACCTGCCCTTAGGTGGAGACCCCCCGGGGGACGTGTGTAAACCAGTGCCTGCTAAGGCCCACCAGCCACATGGGAAATGCATGCAAGATCTGTCTCCTGCCAGCTTGTCCCCACCAGCTCC
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           50376 209 -    142253 GCCCTCCCGACCTCCCAACCCCACCTGCCCCTGGCTGCAGCTTGTGCCT--TGT-----GCAGCCACCTGAGAAAGCTCACTGGGGAGGGTGGCTCCTATCTGCCCTTAGGTGGAGACCCCC-GGGTGATATGTACAAACCAGCTCCTGCTAAGGCCCACCAGCCACATAGGAAATG--TGCAAGATCCATCTCCTGCTAGCTTGTCCCCAAGGACTCC
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75913836 212 + 121039945 GCCCTCCCGACCTCCCAACCCCACTTGCGTCTGGCTGTAGCTTGTGCCT--TGT-----GCAGCCACCTGAGAAAGCTCACTGGGGAAGGCGGCTCCCATCTGCCCTTAGGTGGAGCCCCACCGGGTGATGTGTACAAACCAGCGCCTGCTAAGGCCCACCAGCCGCATAGGAAATGCATGCAAGATCCATCTCCTGCCAGCTTGTCCCTAAGGGCTCC
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     50475 219 -     93100 GCCTTCCCGACCTCCCAGCCCCACCTGCCCCTGGCTACAGCTTGTGCCTCATGTCTACTGCAGCCACCAGAGAAAGCTCACTGGGGAGGGTGGCTCTCATCTACCCTTAGGTGGAGACCACCTGGGTGACATGTACCAACCAGCGCCTGCTAAGGCCCACCAACTGCATGGGAAATGCATGCAATATCCATCTCCCACCAGCTTGTCCCCAAGGGCTCT
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macNem1.NW_012012133v1        22657475 219 +  28977278 CCCCTCCTGGCTTCCTGGCCCCACCTGCCCCTGGCTGCAGCTTGTGCCTCTTGTCTCCTGCAGCCACCTGAGGAAGCTCGCTGGCGAGGGCGGCTCCCATCTGCCATTAGGTGGAGACCCCCCGGGTGACGTGTGCAAACCAGCGCCTGCTAAGGCCCACCAGCTGCATGGGAAATGCATGCCAGATCTGTCTCCCACCAGCTTGTCCCCAGCAGCTCC
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1926604 219 +   8072957 CCCCTCCTGGCTTCCTGGCCTCACCTGCCTCTGGCTGCAGCTTGTGCCTCTTGTCTCCTGCAGCCACCTGAGGAAGCTCGCTGGCGAGGGCGGCTCCCATCAGCCCTTAGGTGGAGACCCCCCGGGTGACGTGTGCAAACCAGCGCCTGCTAAGGCCCACCACCTGCATGGGAAATGCATGCCAGATCTGTCTCCCACCAGCTTGTCCCCAGCAGCTCC
i cerAty1.NW_012000030v1       C 0 C 0
s colAng1.NW_012115910v1         6784711 215 -   6934359 ---TTCCTGACCTCCCAGCCCCACCTGCCCCTAGCTGCAGCTTGTGCTTCATGTCTACTGTAGCCACCTGAGAAAGCTCACTGGGGAGGGTGGCTCTCACCTACCCTTAGGTGGAGACCCCAT-GGTGACATGTACCAACCAGCGCCTGCTAAGGCCCACCAACTGCATGGGAAATGCATGCAATGTCCATTTCCCACCAGCTTGTCAACAAGGGCTCT
i colAng1.NW_012115910v1       C 0 C 0
s calJac3.chrUn_GL286352            6101 217 -     21860 ACTGTCCCAGCCTCTGGACCCC--CTGCCCCTGGCTGCAGCTTGTGCCTGCTGTCTCCTGCAGCCACCTGAGGAAGCTCGCAGGTGAGGGCAACTCCCATCCATCCTTAGGTGGAGACCCCTTGGGTGACGTCTGCAAACCAGCACCTGCGCCGGCTCCCCAGGGGCATGGGAAATGTATGCAAGACCCGTCTCCCACCAGCTTGTCCCCACCGGCTCC
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2613421 217 -   8192610 GCCCTCCCGGCCTCTGGACCCC--CTGCCCCTGGCTGCAGCTTGTGCCTGCTGTCTCCTGCAGCCACCTAAGGAAGCTCGTGGGTGAGGGTGGCTCCCATCCGCCCTTAGGTGAAGATCCCCCGGGGGACGTGTGCAAACCAGCTCCTGCTCAAGCCCCACCGCCGCCTGGGAAATGTATGCAAGACCTGCCTCTTGCCAGCTTGTCCCCACCAGCTTC
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7147078 217 +   9895066 GCCCTCCCGGCCTCTGGACCCC--CTGCCCCTGGCTGCAGCTTGTGCCTGCTGTCTCCTGCAGCCACCTGAGGAAGCTCGCGGGTGAGGGTGGTTCCCATCCACCCTTAGGGGGAGATCCCCTGGGTGACGTCTGCAAACCAGCGCCTGCTCAAGCCCCTCAGCAGCATGGGAAACGTATGCAAGACCCGCCACCTGCCAGCTTGTCCCCACCGGCTTC
i cebCap1.NW_016107368v1       C 0 C 0
e manLeu1.NW_012105664v1         1288046 742 -   1339302 M
e chlSab2.chr12                102644510  22 + 108555830 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=182385.000000
s hg38.chr15_KI270851v1_alt        47673 31 +    263054 CCCAGTTCCTCTGGCCTCCAACCTGTCACCA
s panTro5.chr9                  65530580 31 + 116767853 CCCAGCTCCTCTGGCCTCCACCCTGTCACCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87031229 31 + 138149186 CCCAGCTCCTCTGGCCTCCACCCTGTCACCA
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           50585 31 -    142253 CCCAGTTCCTCTGGCCTCCAACCTGTCACCA
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75914048 30 + 121039945 CCCAG-TCTTCTGGCCTCCAACCTGTCACCA
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     50694 31 -     93100 CCCAGCTACTCTGGCCTCCACCCTGTCACCA
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macNem1.NW_012012133v1        22657694 31 +  28977278 CCCAGCTCCTCTGGCCTCCACCCAGTCACCA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1926823 31 +   8072957 CCCAGCTCCTCTGGCCTCCACCCAGTCACCA
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012105664v1         1288788 31 -   1339302 CCCAGCTCCTCTGGCCTCCACCCAGTCACCA
i manLeu1.NW_012105664v1       M 742 C 0
s colAng1.NW_012115910v1         6784926 31 -   6934359 CCCAGCTACTCTGGCCTCCACCCTGTCACCA
i colAng1.NW_012115910v1       C 0 C 0
s calJac3.chrUn_GL286352            6318 23 -     21860 TC--------CTGGCCTCCACCCTGTCACCA
i calJac3.chrUn_GL286352       C 0 I 14
s saiBol1.JH378203               2613638 31 -   8192610 CCCGGCTCCTCTGGTCTCCACGCTGTCACCA
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7147295 31 +   9895066 CCCGGCTCCTCTGGCCTCCACCCTGTCACCA
i cebCap1.NW_016107368v1       C 0 C 0
e chlSab2.chr12                102644510 22 + 108555830 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=950081.000000
s hg38.chr15_KI270851v1_alt        47704 208 +    263054 GACACAATGACCTTCTCAGAGCCTTTTGGACCACGCTCAACCCTGAGTGCCTCCAGGCCTCCAGAGCCCTTGCTTCCCCTAAAATGCCCTGCAG-TCCGGCCACATATG-CTTTTCCTTCTTCACCACAGCCCCATGTTCCCGTGGTCTCCTCTCCACCTCCACCCGAACACAGCCTGGCTGGACTTCAGTGTGGCTCCACAATACGCCC
s panTro5.chr9                  65530611 209 + 116767853 GGCCCGATGACCTTCTCAGAGCCTTTTGGACCACACTCAACCCTGAGTGCCTCCGGGCCACCAGAGCCCTTGCTTCCCCTAAAATGCCCTGCAA-CCCAGCCACATGTGGTTTTTCCTCCTTCACCACAGCCGCATGGTCCCCTGGCCTCCTCTCCACCTCCACCCGACTCCAGGCTGGCTGGACTTCAGTGTGGCTCCACAACATGCCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87031260 209 + 138149186 GGCCCGATGACCTTCTCAGAGCCTTTTGGACCACACTCAACCCTGAGTGCCTCCGGGCCACCAGAGCCCTTGCTTCCCCTAAAATGCCCTGCAA-CCCAGCCACATGTGGTTTTTCCTCCTTCACCACAGCCGCATGGTCCCCTGGCCTCCTCTCCACCTCCACCCGACTCCAGGCTGGCTGGACTTCAGTGTGGCTCCACAACATGCCC
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           50616 208 -    142253 GGCACAATGACCTTCTCAGAGCCTTTTGGACCACGCTCAACCCTGAGTGCCACCAGGCCTCCAGAGCCCCTGCTTCCCCTAAAATGCCCTGCAG-CCCGGCCACATATG-CTTTTCCTCCTTCACCACAGCCCCATGTTCCCATGGCCTCCTCTCCACTGCCACCCGAACACAGCCTGGCTGGACTTCAGTGTGGCTCCACAATACGCCC
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75914078 207 + 121039945 GGCACAATGACCTTCTCAGAA-TTTTTGGACCACACTCAACCCTGAGTGCCTCCAGGCCTCCAGAGCCCTTGCTTCCCC-AAAACGCCCTGCAACCCCAGCCACATGTG-CTTTTCCTCCTTCACCACAGCCCCACGCTCCCGTGGCCTCCTCTCCACCTCCACCTGACCCCAGCCTGGCTGGACTTCAGTGTGGCTCCACAACACACCC
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     50725 209 -     93100 GGCGCAACGACCACCTTAGAGCCTTTTTGATCACACTCAACCCTGAGTACCTCCAGGTCACCAGAGCCCTTGTTACCCCTAAAACACCCTGCAT-CTCAGCCACATGTGCTTTTTCCTCCTTCAGCACAGCCCTCTGTTCCCGTGGCCTCCTCTCCACCTCCACCCAGCTCCGGCCTGGCTGAATTTCAGTGTGGCTCCACAGTATGCCC
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macNem1.NW_012012133v1        22657725 206 +  28977278 GGTCCGATGACCTTCTCAGAGCCTTTTGGACCACACTCAACCCTGAGTGCCTCCGGGCCTCCAGAGCCCTTGCTTCCCCTAAAACACCCTGCAT-CCCGGCCACATGTGGTTTTTCCTCTTTCAACACAGCCGCATGGTCCCCTGA---CCTCTCTACCTCCACCCGACTCCAGCCTGGCTGGACTTCAGTGTGGCTCCACAACACGCCC
i macNem1.NW_012012133v1       C 0 M 5640
s cerAty1.NW_012000030v1         1926854 206 +   8072957 GGTCCGATGACCTTCTCAGAGCCTTTTGGACCACACTCAACCCTGAGCGCCTCCGGGCCTCCAGAGCCCTTGCTTCCCCTAAAACACCCTGCAT-CCCGGCCACATGTGGTTTTTCCTCTTTCAACACAGCCGCAAGGTCTCCTGA---CCTCTCTACCTCCACCCGACTCCAGCCTGGCTGGACTTCAGTGTGGCTCCACAACACGCCC
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012105664v1         1288819 206 -   1339302 GGTCCGATGACCTTCTCAGAGCCTTTTGGACCACACTCAACCCTGAGTGCCTCCGGGCCTCCAGAGCCCTTGCTTCCCCTAAAACACCCTGCAT-CCCGGCCACATGTGGTTTTTCCTCCTTCACCACAGCCGCATGGTCCCCTGA---CCTCTCTACCTCCACCCGACTCCAGCCTGGCTGGACTTCAGTGTGGCTCCACAACACGCCC
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6784957 209 -   6934359 GGCGCAACGACCACCTTAGAGCCTTTTTGACCACACTCAACCCTGAGTACCTCCAGGTCACCAGAGCCCTTGTTACCCCTAAAACACCCTGAAC-CTCAGCCACATGTGCTTTTTCCTCTTTCACCACAGCCCCATGTTCCCATGGCCTCCTCTCCACCTCCACCCAACTCCAGCCTGGCTGAATTTCAGTGTGGCTCCACAATATGCCC
i colAng1.NW_012115910v1       C 0 C 0
s saiBol1.JH378203               2613669 197 -   8192610 GGCCCGACAACCTCCTCAGAGCCTTTTGGATCACACTCAACCCTGAGTGCTGCCAGGCCACAAAAGCCCTTGCTCCCCCTAAAACGCCCTGCAC-CCCGGCCACATGCACTTGTTCCTCCTTCACCACAGCCCCGTGGGCCCGTGGCCTCCTCTCCACCCTCGCGTGCCTCCAGCCTGGCTGGACTTCCACATGGCCC------------
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7147326 185 +   9895066 GGCC------------CAGAGCCTTTGGGATCACACTCAACCCTGAGTGCCACCAGGCCACCAGAGCCCTTGTCTCCCCTAAAACGCCCTGCAC-CCCGGCCACATGCGCTTGTTCCTCCCTCACCACAGCCCCATGGGCCCGCGGCCTCCTCTCCAGCCCCACGGGCCTCCAGCCTGGCTGGACTTTCGTGTGGCCC------------
i cebCap1.NW_016107368v1       C 0 C 0
e chlSab2.chr12                102644510  22 + 108555830 I
e calJac3.chrUn_GL286352            6341  14 -     21860 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=2376652.000000
s hg38.chr15_KI270851v1_alt        47912 575 +    263054 TGTCCCCCAGAGCTCCCCTCTACACAACCAGGGGCCACCTTCTCCAACCAGGGTGATCTCTGGCCTTGGGTGCTCCAGCGGTCCCATCCGGGACCTCTCCCGCTGGAGGGAGGCTGCCACCACCTGGGGCCTCTCCACCTGCTCACAGGGCAAATCCCAGCAACAGCATCTTCCCAACCACCCCCCAGAGGCTTCCTTCTGGGGAGACCCCACACCCAGGCAGATGGAGGCAGGTGGCCGCACATTCTTCCATCCCAACGTGCAGAAGCTGCTGGAGACTC--ATCTCCAAGAGAGCAGTGATGAAGATGTGGCAGGAGAAAGAAT--GGGGGTGGGCAGACTACCCGCAGATGACATCACTGGGGAAGGAGTGGGACATCACGACTCTAAATCCCTTCTGGAACGTGGCAAACCTACCACAGAAGCTGCCCCATCCTCAGCAGGTCTCTGACGCCATGGCCATGTGGGACCACTTAGAGCAGAAATGCAGCCATCTCTTCTGGGAT-----CTCCCCTCTTTCAATAGCGAGTCCCTGGTGACCATGGCCTGGGTTTCTAGGAACATTTCCTCACAGAATGAG
s panTro5.chr9                  65530820 577 + 116767853 CGTCCCCCAGAGCTCCCCTCTACACAACCAGGTGCTGCCTCCTCCAACCAGGGTGATCTCTGGCCTGGGGTGCTCCAGCGATCCCATCTGGGACCTCTATTGCTGGAGGGAGGCTGCCACCACCTGGGGCCTCTCCACCTACTCACATGGCAAATCCCAGCCACGGTATCTTCCCGACCACCCCTCAGAGGCTTCCTTCTGGGGAGACCCCACACCCAAGCACATGGAGGTAGGTGGCTGCACATTCATCCACCCTGACGTGCAGAAGCTGCTGGAGACTCTCATCGCCAAGAGAGCACTGATGAAGATGTGGCAGGAGAAAGAAA--GGAAACGGGCCGACCACCCGCACATGACATCACTGGGGAAGGAGTGGGACATCACGACCCTAAATCCCTCCTGGAACGTGTCAACCCAGCCACAGCAGCTGCCCCGTCCTCAGCAAGTCTCTGATGCCACAACCGTGGGGAACCACTTACAGCAGAAACGCAGCCAGCTTTTCTGGGAC-----CTCCCCTCTCTCAATAGCGAGTCCCTGGCGGCCACAATCTGGGTTTCTAGGAACCCTTCCTCACAAAATGCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87031469 577 + 138149186 CGTCCCCCAGAGCTCCCCTCTACACAACCAGGTGCTGCCTCCTCCAACCAGGGTGATCTCTGGCCTGGGGTGCTCCAGCGATCCCATCTGGGACCTCTATTGCTGGAGGGAGGCTGCCACCACCTGGGGCCTCTCCACCTACTCACATGGCAAATCCCAGCCACGGCATCTTCCCGACCACCCCTCAGAGGCTTCCTTCTGGGGAGACCCCACACCCAAGCACATGGAGGTAGGTGGCTGCACATTCATCCACCCTGACGTGCAGAAGCTGCTGGAGACTCTCATCGCCAAGAGAGCACTGATGAAGATGTGGCAGGAGAAAGAAA--GGAAACGGGCCGACCACCCGCACATGACATCACTGGGGAAGGAGTGGGACATCACGACCCTAAATCCCTTCTGGAACGTGTCAACCCAGCCACAGCAGCTGCCCCATCCTCAGCAAGTCTCTGATGCCACAACCGTGGGGAACCACTTACAGCAGAAACGCAGCCAGCTTTTCTGGGAC-----CTCCCCTCTCTCAATAGCGAGTCCCTGGCGGCCACAATCTGGGTTTCTAGGAACCCTTCCTCACAAAATGCA
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           50824 574 -    142253 TGTACCCCAGAGCTCCCCTCTACACAACCAGGGGCCACCTTCTCCAACCAGGGTGATCTCTGGCCTTGGGTGCTCCAGCGGTCCCATCCGGGACCTCTCCCGCTGGAGGGAGGCTGCCACCACCTGGGGCCTCTCCACCTGCTCACAGGGCAAATCCCAGCAACAGCATCTTCCCAACCACCCC-CAGAGGCTTCCTTCTGGGGAGACCCCACATCCAGGCAGATGGAGGCAGGTGGCCGCACATTCTTCCATCCCAACGTGCAGAAGCTGCTGGAGACTC--ATCACCAAGAGAGCAGTGATGAAGATGTGGCAGGAGAAAGAAT--GGGGGTGGGCAGACTGCCCGCAGATGACATCACTGGGGAAGGAGTGGGACATCATGACTCTAAATCCCTTCTGGAACATGGCAAAACTACCACAGAAGCTGCCCCATCCTCAGCAGGTCTCTGACGCCACGGCCATGTGGGACCACTTAGAGCAGAAATGCAGTCATCTCTTCTGGGAT-----CTCCCCTCTTTCAATAGCGAGTCCCTGGTGGCCAGGGCCTGGGTTTCTAGGAACATTTCCTCACAGAATGAG
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75914285 579 + 121039945 TGTCCCCCAGAGCTCCCCTCTACACAACCAGGGGCCACCTTCTCCAACCAGAGTGATCTCTGGCCTTGAGTGCTCTAGTGGTCCCATCCGGGACCTCTCCCGCTGGAGGGAGGCTGCCACCACCTGGGGCCTCTCCACCTGCTCACATGGCAAATCCCAGCAACAGCATCTTCCCAACCATCCTCCAGAGGCTTCCTTCTGGGGAGACCCCACACCAAGGCAGATGGAGGCAGATGGCTGCACGTTCATCCATCCCAACGTGCAGAAGCTGCTGGAGACTCTCATCGCCAAGAGAGCAGTGATGAAGACGTGGCAGGAGAAAGAATGGGGGGGGGGGCAGGCTACCCACAGATGACATCACTGGGGAAGGAGTGGGACATCACGACTCTAAATTCCTTCTGGAACGTGACAACCCAACCACAGCAGCTGCCCCATCCTCAGCAGGTCTCTGACGCCACGGCCGTGTGGGACCACTTAGAGCAGAAATGCAGCCATCTCTTCTGGGAT-----CTCCCCTCTTTCAATAGCGAGTCCCTGGTGGCCACGGCCTGGGTTTCTAGGAACCCTTCCTCACAGAATGAG
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     50934 582 -     93100 CGTCCCCCAGAGCTGCCTTTTACACAACCAGGGGCTGCCTTCTCCAACCAGAGTGATCTCCGGCTTTGGGTGCTCCAGTGATCCCATCTGGGACCTCTCCTGCTGGAGGGAGGCTGCCACCACCTGGGGCCTCTCCACCTGCTCACATGGCAAGTCCCAGCAACAGCATCTTCCTGACCTCATCCTAGAGGCTTCCTTCTGGGGAGACCCCACACCCAGGCAGATGGAGGTAGGTGCCTGCACATTCATCCACCCCAACATGCAGAAGCTGCTGGAAACTCTCATCACCAAGAGAGCAGTGATGAAGATGTGGCAGGAGAAAGAAA--GGAGGCAGGCAGACTACCTGCAGATGACATCACTGGGGAAGGAGTGGGACATCACGACTCTAAATCCCTTCTGGAATGTGACAACCCAACCACAGCAGCTGCCTGGTCCTCAGCAGGTCTCTGATGCCACGTCCATGGGGGACCACTTACAGTGGAAATGCAGCCAGCTCTTCTGAGACCTCTTCTCCCCTCTTTCAATAGGGAGTCCCTGGTGGTCACGGCCTGGGTTTCTAGGAACCCTTCCTCACAGAATGTG
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s cerAty1.NW_012000030v1         1927060 574 +   8072957 CGTCCCCAAGAGCTCCCCTCTACACAGCCAGGGGCTGCCTTCTCCAACCAGAGTGATCTCTGACCTTGGGTGCTCCAGCGATCCCATCCAGGAACTCTATTGCTGGAGGGAGGCTGCCACCACCTGGGGCCTCTCCACCTGTTCACATGGCAAATCCCAGCCACAGCATCTTCCCGACCAGCCCCTAGAGGCTTCCTTCTGGGGAGACCCCACACCCAGGCACGTGGAGGTAGGTGTCTGCACATTCATCCACCCTGACGTGCAGAAGCTGCTGGAGACTCTCATTGCCAAGAGAGCACTGATGAAGATGTGGCAGGGGAAAGAAA--GGGAACGGGCCGACCACCCGCAGATGACATCACTGGGGAAGGAGTGGGACATCACAACTCTAAATCCCTTCTGGAACGTGTCAACTGAACCACAGCAGCTGCCCCGTCCTCAGCAAGTCTCTGACGCCACAGCCGTGGGGAACCACTTGCAGCAGAAATGCAGCCAGCTTTTCTGGAAC-----CTCCCATCTTTC---AGCGAGTCCCTGGTAGCCACAGCCTGGGTTTCTAGCAAGCCTTCCTCACAGAATGCA
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012105664v1         1289025 577 -   1339302 CGTCCCCAAGAGCTCCCCTCTACACAGCCAGTTACTGCCTTCTCCAACCAGGGTGATCTCTGACCTTGGGTGCTCCAGCGATCCCATCCAGGAACTCTATTGCTGGAGGGAGGCTGCCACCACCTGGGGCCTCTCCACCTGTTCACCTGGCAAATCCCAGCCACAGCATCTTCCCGACCAGCCCCTAGAGGCTTCCTTCTGGGGAGACCCCACACCCAGGCACGTGGAGGTAGGTGTCTGCACATTCATCCACCCTGACGTGCAGAAGCTGCTGGAGGCTCTCATTGCCAAGAGAGCACTGATGAAGATGTGGCAGGGGAAAGAAA--GGGAACGGGCCAACCACCCGCAGATGACATCACTGGGGAAGGAGTGGGACATCACGACTTTAGATCCCTTCTGGAACGTGTCAACTGAACCACAGCAGCTGCCCCGTCCTCAGCAAGTCTCTGACGCCACAGCCGTGGGGAACCACTTGCAGCAGAAATGCAGCCAGCTTTTCTGGAAC-----CTCCCATCTTTCAACAGCGAGTCCCTGGTAGCCACAGCCTGGGTTTCTAGCAAGCCTTCCTCACAGAATGCG
i manLeu1.NW_012105664v1       C 0 I 102
s colAng1.NW_012115910v1         6785166 570 -   6934359 CATCCCCCAGAGCTGCCTTTTACACAACCAGGGGCTGCCTTCTCCAACCAGGGTGATCTCTGGCTTTGGGTGCTCCAGTGATCCCATCTGGGACCTCTCCTGCTGGAGGGAGGCTGCCACCACCTGGGGCCTCTCCATTTGCTCACATGGCAAGTCCCAGCAACAGCATCTTCCTGACCACCCCCTAGAGGCTTCCTTCTGGGGAGACCCCAAACCCAGGCAGATGGAGGTAGGTGCCTGCACATTCATCCACCCCGACATGCAGAAGCTGCTGGAAACTCTCATCACCAAGAGAGCAGTGATGAAGATGTGGCAGGAGAAAGAAA---------GGCAGACTACCTGCAGATGACATCACTGGGGAAGGAGTGGGACATCACGACTCTAAATCCCTTCTGGAATGTGAC-----AACCACACCAGCTGCCTGATCCTCAGCAGGTCTCTGATGCCACGTCCATGGGGGACCACTTACAGTGGAAATGCAGCCAGCTCTTCTGAGACCTCTTCTCCCCTCTTTCAATAGGGAGTCCCTGCTGGCCACGGCCTGGGTTTCTAGGAACCCTTCCTCACAGAATGTG
i colAng1.NW_012115910v1       C 0 C 0
s saiBol1.JH378203               2613866 577 -   8192610 CGGCCCCCACAGCTCCCCTCCACGCCAGCAGCGGCCGCCGGCTCCAACCACAGTGATCTCTGGCCTTGGGCGCTCCGGTGAGCCCACTGGGGACCTCTCCTCGTGGAAGGATGCTGCCACCATGTGGGGCCTCTCCACCTGCTCACATGGCAAATTCCAGCAACAGCATCTTCCCGGCCACCCCCTAGAGGCTTCCTTCTGGGGAGACCCCACACCCAGGCAGACGGAGGCAGGTGAGTGCACATTCATCCACCCTGAGGTGCAGAAGCTGCTGGAGACTCTCATCACCAAGAAGGCAGTGATGAAACTGCGGCAGGAGGAAGAAG--GGAAGGGGGCGGACTGCCCGCAGATGACACCACCTTGGGAGGAGTGGGACGCCACGACTCCCGATCCCTTCTGGAACCAGACAGCCCAACCACAGCAGCCGCCCAGCCCGCAGCAGGTCTCTGACGCCACGGCCATGGGGGACCACTTCCAGCAGAAATGCAGCCAGCTCTTCTGGGAC-----CTCCCCTCTTTCAACAGCGAGTCCCTGGTGGCTGCGGCCTGGGTTTCGAAGGAGGCTTCCTCGGGAAACAGG
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7147511 574 +   9895066 CGGCCCCCACAGCTCCCCTCCACAACAGCAGCAGCCACCGGCTCCAACCACGGTGATCTCTGGACTTGGGCGCTCCGGCGAGCCCACCGGGGACCTCTCCTGGTGGAAGGAGGTTGTCACCACGTGGGGCCTCTCCACCTGCTCACATGGCAAATTCCAGCAACAGCATCTTCCCGACCACACCCCAGAGGCTTCCTTCTGGGGAGACCGCACACCCAGGCAGATGGAGGCAGGTGAGTACACATTCATCCACCCTGACGTGCAGAAGCTGCTGGAGACTCTCATCACCAAGAAGGCAGTGATGAAGCTGCGGCAGGAGAAAGAAG--GGAAGGGGGCAGACTGCTTGCGGGTGACACCACTGCAGAAGGAGTGGGACGCCACGACTCCCGATTCCTTCTGGAACCAGACAGCCCAACCACAGCAGCCACCCAGTCCGCAGCAGGTCTCTGACGCCACGGCCATGGGGGACCACTTTCAGCAGAAATGCAGCCAGCTCTTATGGGAC-----CTCCCCTCTTTCAACAGCGAGTCCCTGGTGGCTGCGGCCTGGGTTTCCA---AGGCTTCCTCAGGAAACAGG
i cebCap1.NW_016107368v1       C 0 C 0
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e chlSab2.chr12                102644510  22 + 108555830 I
e calJac3.chrUn_GL286352            6341  14 -     21860 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=133266.000000
s hg38.chr15_KI270851v1_alt        48487 34 +    263054 CACTCTGTACCATCGGATAAAGCCTCCACTTCCC
s panTro5.chr9                  65531397 34 + 116767853 CACTCTGTACCACTGGATAAAGCCTCCACTTCTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87032046 34 + 138149186 CACTCTGTACCACTGGATAAAGCCTCCACTTCTC
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           51398 34 -    142253 CACTCTGTACCATTGGATAAAGCCTCCACTTCCC
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75914864 34 + 121039945 CACTCTGTACCATTGGATAAAGCCTCCACTTCTC
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     51516 34 -     93100 TACTCTGTACCATTGGATAAAGCCTCCAATTCTC
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s cerAty1.NW_012000030v1         1927634 34 +   8072957 CACTCTGTATCATTGGATGAAGCCTCCACTTCTC
i cerAty1.NW_012000030v1       C 0 I 617
s manLeu1.NW_012105664v1         1289704 34 -   1339302 CACTCTGTATCATTGGATGAAGCCTCCACTTCTC
i manLeu1.NW_012105664v1       I 102 C 0
s colAng1.NW_012115910v1         6785736 34 -   6934359 TACTCTGTACCATTGGATAAAGCCTCCACTTCTC
i colAng1.NW_012115910v1       C 0 C 0
s saiBol1.JH378203               2614443 34 -   8192610 CACAGGGTATCATTCCGTGAAGCCGCCACTTCCC
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7148085 34 +   9895066 CACAGGGTATCATTTTGTGAAGCTGCCACTTCTC
i cebCap1.NW_016107368v1       C 0 C 0
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e chlSab2.chr12                102644510 22 + 108555830 I
e calJac3.chrUn_GL286352            6341 14 -     21860 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=554002.000000
s hg38.chr15_KI270851v1_alt        48521 141 +    263054 TTCCAGGTGAAACTGAGGTTGAGACACCCTCACAGCTTTcccaggcacggccccagccccaccacgtggcccagccccaacctttcactccaacctg------gccccagtcccagcccccgccTCTAGCTGGGATCCAGACACA--GT
s panTro5.chr9                  65531431 140 + 116767853 TTCCAGGTGAACCTGAGGTTGAGGCATCCTCACAGCTTTcccaggcaccaccccagccccaccacatggcccagccccaacatttcactccagcctg------gccccagtcccagcccccacctttggctgagatccagaccca--g-
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87032080 140 + 138149186 TTCCAGGTGAACCTGAGGTTGAGGCATCCTCACAGCTTTcccaggcaccaccccagccccaccacatggcccagccccaacatttcactccagcctg------gccccagtcccagcccccacctttggctgagatccagaccca--g-
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           51432 141 -    142253 TTCCAGGTGAAACTGAGGTTGAGACACCCTCACAGCTTTCTcaggcacggccccagccccaccacgtggcccagccccaacctttcactccaacctg------gcctcagtcccagcccccgccTCTGGCTGGGATCCAGACACA--GT
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75914898 141 + 121039945 TTCCAGGTGAAAATGAGGTGGAGACACCCTCACAGCTTTCCCAGGCACGGCCCCAGCCCCACCACGTGGCCCAGCCCCAACCTTTCACTCCAACCTG------GCTCCAGTCCCACTCCCCGCCTCTGGCTGGGATCCAGACACA--GT
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     51550 138 -     93100 TTCAAGGTGAACCTGAGGTTGAGGCATCCTCACAGCTTTCCCAGGCACAGCCCCAGCCCCA-CAGATGGCCCGGCTCCAACCTTTCACTTCAACCTG------GCCCCAGTCCCAGCCCCCACCTCTGGCTGGGATCCAGAAGCA----
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s cerAty1.NW_012000030v1         1928285 115 +   8072957 TTCCAGGTGAACCTGAGGTTGAGGCATCCTCACAGCTTTCCCAGGCACCGCC------------------------CCAACCTTTCACTCCAGCCTG------GCCCCAGTCCCAGCCGCTGCCTTTGGCTGGGATCCAGACCCA----
i cerAty1.NW_012000030v1       I 617 C 0
s manLeu1.NW_012105664v1         1289738 139 -   1339302 TTCCAGGTGAACCTGAGGTTGAGGCATCCTCACAGCTTTCGcaggcaccgccccagccccaccacatggcccagccccaacctttcactccagcctg------gccccagtcccagccgccgcttttggctgggatccagaccca----
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6785770 140 -   6934359 TTCAAGGTGAACCTGAGGTTGAGGCATCCTCACAGCTTTcccaggcacagccccagcccca-cacatggctcagatccaacctttcacttcagcctg------gccccagtcccagccccCACCTCTGGCTGGGATCCAGAAGCAGT--
i colAng1.NW_012115910v1       C 0 I 33
s saiBol1.JH378203               2614477 139 -   8192610 TTCCACGTGAGCCTCAGGTTGAGGCATCCTCACAGCTTccccaggcaccaccccagccccgccacgtggcccagcctcaacctttcactccagccag------gccccggccccagcccccgcctctggctgggatccagaccca----
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7148119 145 +   9895066 TTCCACGTGAACCTGAGGTTGAGGCATCATCACAGATTccccaggcaccaccccagccccaccacgtggcccagcctcaacttgtcactccagccaggccccagccccagccccagcccccgcctctggctgggatccagaccca----
i cebCap1.NW_016107368v1       C 0 C 0
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e chlSab2.chr12                102644510  22 + 108555830 I
e calJac3.chrUn_GL286352            6341  14 -     21860 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=76965.000000
s hg38.chr15_KI270851v1_alt        48662 26 +    263054 GGGGCAAATCTCAACCCCTGTCCCAA
s panTro5.chr9                  65531571 25 + 116767853 -gcccacctctcaccccctgtcccaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87032220 25 + 138149186 -gcccacctctcaccccctgtcccaa
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           51573 26 -    142253 GGGGAAAATCTCAACCCCTGTCCCAA
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75915039 26 + 121039945 GGGGCAAATCTCAACCCCTGTCCCAA
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     51688 26 -     93100 GTCTCACTTCTCACCCCCTGTCCCAA
i rheMac8.chrUn_NW_014998353v1 C 0 I 9
s cerAty1.NW_012000030v1         1928400 26 +   8072957 GGCCCACCTCTCACCCCCTGTCCCAA
i cerAty1.NW_012000030v1       C 0 I 9
s manLeu1.NW_012105664v1         1289877 26 -   1339302 ggcccacctctcaccccctgtcccaa
i manLeu1.NW_012105664v1       C 0 I 9
s saiBol1.JH378203               2614616 26 -   8192610 gccccaCTTCTCACCCCGTGTCCCAA
i saiBol1.JH378203             C 0 I 9
s cebCap1.NW_016107368v1         7148264 26 +   9895066 ggcccaCTTCTCACCCCGTGTCCCAA
i cebCap1.NW_016107368v1       C 0 I 9
e colAng1.NW_012115910v1         6785910 33 -   6934359 I
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e chlSab2.chr12                102644510 22 + 108555830 I
e calJac3.chrUn_GL286352            6341 14 -     21860 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=23817.000000
s hg38.chr15_KI270851v1_alt        48688  9 +    263054 CC---------TCTTCTC
s panTro5.chr9                  65531596 18 + 116767853 gccTGGGGTGCTCTTCTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87032245 18 + 138149186 gccTGGGGTGCTCTTCTC
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           51599 18 -    142253 GCCTGCCGTGCTCTTCTC
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75915065 18 + 121039945 GCCTACCGTGCTCTTCTC
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     51723  9 -     93100 ---------GCTCTTCTC
i rheMac8.chrUn_NW_014998353v1 I 9 C 0
s cerAty1.NW_012000030v1         1928435  9 +   8072957 ---------GCTCTTCTC
i cerAty1.NW_012000030v1       I 9 C 0
s manLeu1.NW_012105664v1         1289912  9 -   1339302 ---------GCTCTTCTC
i manLeu1.NW_012105664v1       I 9 C 0
s colAng1.NW_012115910v1         6785943  9 -   6934359 ---------GCTCTTTTC
i colAng1.NW_012115910v1       I 33 C 0
s saiBol1.JH378203               2614651  6 -   8192610 ---------TCTCTT---
i saiBol1.JH378203             I 9 C 0
s cebCap1.NW_016107368v1         7148299  9 +   9895066 ---------TCTCTTCTC
i cebCap1.NW_016107368v1       I 9 C 0
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e chlSab2.chr12                102644510 22 + 108555830 I
e calJac3.chrUn_GL286352            6341 14 -     21860 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=2280307.000000
s hg38.chr15_KI270851v1_alt        48697 449 +    263054 CACCCCAGATTAGGGTCTGTGGAGCATCTTGCCCTACATCCCAGAAGAGGGCACAGTCTGTCATCCCCACTGGAAAAAAGTATCTTGAGTGGCCCTTGCAGAAATGACCAAAGTGGAAGAGGGTTTTGCCCTCTCTCCTCAAAAAGTCTCAGGCTGTCCTGAGCCAGCCCACTTCCCACCTTCCCCAGGAGAGGCCAGCCTCCCTGAACCCTAAGTCAGCCCCCATCCTTCCCGGGATTGCCACCAGCCCTGAGCTCCCAGAGCACCGGTGGCAAGGAAGGAGTGCCATCCGCCAGGAGCAGTCCCGTGGCC-TCCCAGCAGATTCAAGGCACCTGGAGACCTGCTGCAGCCTAAGGGGGAATTCCCAGGGAGGCCCCAGAGTCAGGCAGAAGCCACGCAGGGGGCCCTCTTGCCCTCCCGGGATTCTGAATTTGTAGGAAAGGGCACGA
s panTro5.chr9                  65531614 450 + 116767853 CAACCCAGATTAGGGGCTGTGGGGCATCTTACCCTACATCCCAGGAGAGGACACAGTCTGTCATCCCCACTGGAAAGGAGTATCTTGAATGGCCCTTGAAGAAGCGACCAAAGTGGAAGAGGGTTTTGCCCTCTCTCCTCAAAAAGTCTCAGGCTGTTCTGAGCCAGCCCACTGCCCACCTTCCCCAAGAGAGGCCGGCCTCCTGGAGCCCCAAGTCAGCCCCCATCCTTCCCGGGGTTGTCACCAGCCCTGAGCTCCCAGAGCACTGGTGGCAAGGAAGGAATGCCATCCACCAGGAGCAGTCCTGTGGCCCTCCCAGCAGATTGCAGGCATCTGGGGACCTGCTACAGCCTGATGGGGAATTCCCAGGGAGGCCCCAGAGTCAGGCAGAAGACACGCAGCAAGCCCTCTTGCCCTCCCAGCCTTCTGAATTTGCAGGGAAGGGCAGGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87032263 450 + 138149186 CAACCCAGATTAGGGGCTGTGGGGCATCTTACCCTACATCCCAGGAGAGGACACAGTCTGTCATCCCCACTGGAAAGGAGTATCTTGAATGGCCCTTGAAGAAGCGACCAAAGTGGAAGAGGGTTTTGCCCTCTCTCCTCAAAAAGTCTCAGGCTGTTCTGAGCCAGCCCACTGCCCACCTTCCCCAAGAGAGGCCGGCCTCCTGGAGCCCCAAGTCAGCCCCCATCCTTCCTGGGGTTGTCACCAGCCCTGAGCTCCCAGAGCACTGGTGGCAAGGAAGGAATGCCATCCACCAGGAGCAGTCCTGTGGCCCTCCCAGCAGATTGCAGGCATCTGGGGACCTGCTACAGCCTGATGGGGAATTCCCAGGGAGGCCCCAGAGTCAGGCAGAAGACACGCAGCAAGCCCTCTTGCCCTCCCAGCCTTCTGAATTTGCAGGGAAGGGCAGGA
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           51617 449 -    142253 CACTCCAGATTAGGGTCTGTGGAACATCTTGCCCTACATCCCAGGAGAGGGCACAGTCTGTCATCCCCACTGGAAAGAAGTATCTTAAGTGGCCCTTGCAGAAATGACCAAAGTGGAAGAGGGTTTTGCCCACTCTCCTCAAAAAGTCTCAGGCTGTCCTGAGCCAGCCCACTTCCCACCTTCCCCAGGAGAGGCCAGCCTCCCAGAACCCTAAGTCAGCCCCCATCCTTCCCGGGATTGCCACCAGCCCTGAGCTCCCAGAGCACCGGTGGCAAGGAAGGAGTGCCATCCACCAGGAGCAGTCCCGTGGCC-TCCCAGCAGATTCAAGGCACCTGGAGACCTGCTGCAGCCTAAGGGGGAATTCCCAGGGAGGCCCCAGAGTCAGGCAGAAGACACGCAGGGGGCCCTCTTGCCCTCCCGGGATTCTGAATTTGTAGGAAAGGGCACAA
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75915083 448 + 121039945 CACCCCAGATTAGGGTCTGTGGGGTATCTTGCCCTACATCCCAGGAGAGGGCACAGTCTGTCATCCCCACTGGAAAGGAGTATCTTGAGTGGCCCTTGCAGAAGTGACCAAAGTGGAAGAGGGTTTTGCCCTCTCTCCTCAAAAAGTCTCAGGCCATCCTGAGACAGCCCACTGCCCACCTTCCCCAGGAGAGGCCAGCCTCCCAGAACCCTAAGTCAG-CCCCATCCTTCCCAGGATTGCCACCAGCCCTGAGCTCTCAGAGCACCGGTGGCAAGGAAGGAGCGCCATCCACTAGGAGCAGTCCCGTGGCA-TCCCAGCAGATTCCAGGCATCTGGAGACCTGCTGCAGCCTGAGGGGGAATTCCCAGGGAGGACCCAGAGTCAAGCAGAAGACATGCAGGGGGTCCTCTTGCCCTCCCAGGATTCTGAATTTGTAGGAAAGGGCACGA
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     51732 445 -     93100 CACCCCAGATCAGGTTCTGTGGGGCATCTTGCCCTACATCCAATGAGAGGGCACAGTCTGTCATCCCCAATTTAATGGAGTATCTTGAATGGCCCTTGCAGAAGTGACCAAAGTGGAAGAGAGCTTTTCCCTTTCTCCTAAAAAATTCTCAGGCTGTCCTGAGCCAGCCCACTGCCCACCTTCCCCAGAAGAGGCCGGCTTTCCAGAGCCCCAAGTCAGCCTCCATTCTTTCTGGGGTTGCCTCCAGCACTGAGATCCCAGAGCACCGGTGGCAAGGAAGTAGTGCCATATGCCAGGAGCAGTCCCGTGGCCCTCCCAGCAGATTC----CATCTGGAGACCT-CTGCAACCTGAGGGGGAATTCACAGGGAGGCCCCAGGGTCAGGCAGAAGACACACAGGGAGTCCTCTTGCCCTCCCAGGCTTCTGAATTGGCAGGAAAGGGCAGGA
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s cerAty1.NW_012000030v1         1928444 450 +   8072957 CACCCCATATTAGGGACTGTGGGGCATCTTACCCGACAACCCAGGAGAAGACAGAGTCTGTCATCCCCGCTGGAAAGGAGAATCTTGAATGGACCTTGAAGAAGCGACCAAAGTGGAAGAGGGTTTTGCCCTCTCTCCTCCAAAAGTCTCCGGCTGTCCTGAGCCAGCCCACTGCCCACCTTCCCCAGCAGAGGCCAGCCTCCTGGAGCCCCAAGTCAGCCCCCATCCTTCCCGGGGTTGCCACCAGCCCTGAGCTCCCAGAGCACCGGTGGCAAGGAAGGAGTGCCATCCACCAGGAGCAGTCCTGTGGCCCTCCCAGCAGATTCCGGGCATCTGGGGACCTGCCGCCGCCTGAGGGGGAATTCCCAGGGAGGCCCCAGAGTCGGGCAGAAGACACGCAGGAGGCCCTCTTGCCCTCCCAGGCTTCCGGATTTGCAGGGAAGGGCAGGA
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102644532 450 + 108555830 CACCCCATATTAGGGACTGTGGGGCATCTTACCCTACAACCCAGGAGAAGACACAGTCTGTCATCCCCGCTGGAAAGGAGAATCTTGAATGGACCTTGAAGAAGCGACCAAAGTGGAAGAGGGTTTTGCCCTCTCTCCTCCAAAAGTCTCCGGCTGTCCTGAACCAGCCCACTGCCCACCTTCCCCAGGAGAGGCCAGCCTCCTGGAGCCCCAAGTCAGCCCCCATCCTTCCCGGGGTTGCCACCAGCCCTGAGCTCCCAGAGCACCGGTGGCAAGGAAGGAGTGCCATCCACCAGGAGCAGTCCTGTGGCCCTCCCAGCAGATTCCGGGCATCTGGGGACCTGCTGCCGCCTGAGGGGGAGTTCCCAGGGAGGCCCCAGAGTCGGGCGGAAGACACGCAGCAGGCCCTCTTGCCCTCCCAGGCTTCTGAATTTGCAGGGAAGGGCAGGA
i chlSab2.chr12                I 22 C 0
s manLeu1.NW_012105664v1         1289921 450 -   1339302 CACCCCATATTAGGGACTGTGGGGCATCTTACCCAACAACCCAGGAGAAGACAGAGTCTGTCATCCCCGCTGGAAAGGAGAATCTTGAATGGACCTTGAAGAAGCGACCAAAGTGGAAGAGGGTTTTGCCCTCTCTCCTCCAAAAGTCTCCGGCTGTCCTGAGCCAGCCCACTGCCCACCTCCCCCAGGAGAGGCCAGCCTCCTGGAGCCCCAAGTCAGCCCCCATCCTTCCCGGGGTTGCCACCAGCCCTGAGCTCCCAGAGCACCGGTGGCAAGGAAGGAGTGCCATCCACCAGGAGCAGTCCTGTGGCCCTCCCAGCAGATTCCGGGCATCTGGGGACCTGCCGCCGCCTGAGGGGGAATTCCCAGGGAGGCCCCAGAGTCGGGCAGAAGACACGCAGGAGGCCCTTTTGCCCTCCCAGGCTTCTGGATTTGCAGGGAAGGGCAGGA
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6785952 445 -   6934359 CACCCCAGATCAGGTTCTGTGGGGCATCTTGCCCTACATCCAATGAGAGGGCACAGTCTGTCATCCCCAGTGGGATGGAGTGTCTTGAATGGCCCTTGTAGAAGTGACCAAAGTGGAAGAGGGCTTTTCCCTTTCTTCTAAAAAATTCTCAGGCCGTCCTGAGCCAGTCCACTGCCCACCCTCCCCAGAAGAGACCAGCTTTCCAGAGCCCCAAGTCAGCCTCCATTCTTCCTGGGGTTGCCTCCAGCACTGAGATCCCAGAGCACCGGTGGCAAAGAAGTAGTGCCATGCACCAGGAGCAGTCCCATGGCCCTCCCAGCAGATTC----CATCTGGAGACCT-CTGCAACCTGAGGGGGAATTCCCAGGGAGGCCCCAGGGTCAGGCGGAAGACACACAGGGCATCCTCTTGCCCTCCCAGTCTTCTGAATTTGCAGGAAAGGGCAGGA
i colAng1.NW_012115910v1       C 0 C 0
s saiBol1.JH378203               2614657 450 -   8192610 CACCCCAGATTAGGGGCTGTGGGGCATCTTGCCTTACATCCCAGCAGAGGGCACATTCTGCCACCCGCACTGGAAAGGAGTATCTTGAATGGCCCTTGCAGAAGCGACCAAAATGGAAGAAGATTTTGCCCTCTCTCCTCCAAAAGTCTCAGGCTGTCCTGAGCGAACCCACTGCCCACCATCCCCAGGAGAGGCTGGCCCTCCGCAGCCCCGAGTCAGCCCCCATCCTTTCCGGGGCTGCCACCAGCCCCGAGCTCCCAGAGCACCGGTGGCAAGGAAGGAGTGCCATCCACCAGGAGCAGCCCCGTGGCTCGCCTGGCAGATTCCAGCCACCTGGAGACCCGCTGCCGCCCAAGGGGGAATTCCCAGGGATGCCCCAGCATCAGGCAGAAGACACGCAGGGGGCCCGTCTGCCCTCCCAGCCTTCTGAATTTTCGGGGAAGCACAGCG
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7148308 450 +   9895066 CACCCCACATTAGGGGCTGTGGGGCATCTTGCCTTACATCTCAGCAGAGGGCACATTCTGCCATCCCCACTGGAAAGGGGTATCTTGAATGGCCCTTGCAGAAGCGACCAAAGTGGAAGAGGGTTTTGCCCTCTCTCCTCCAAAAGTCTCAGGCTGTCCTGAGCGAACCCACTGCTCACCTTCTCCAGGAGAGGCCAGCCCCATACAGCGCCAAGTCAGCCCCCATCCTTTCCGGGGCTGCCTCCAGCCCTGAGCTTCCAGAGCACCAGTGGCGAGGAAAGGGTGCCATCCACCAGGAGCAGCCCCGTGGCTCGCCTGGCAGATTCCAGCCACCTGGAGACCCGCTGCGGCCCCAGGGGGAATTCCCAGGGATGCCCCAGCATCAAGCAGAAGACATGCAGGGGACCCACCTGCCCTCCCAGCCTTCTGAATTTTCGGGGAAGCACAGCG
i cebCap1.NW_016107368v1       C 0 C 0
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e calJac3.chrUn_GL286352            6341  14 -     21860 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=5775193.000000
s hg38.chr15_KI270851v1_alt        49146 1011 +    263054 AGGATGTGCAGAAAGCAGGGCTCAGGAGCTCTGGAAGGTTCTCTGGGAAGGGGTGCTTAGGGTCCAAACTAGAGCCAGAACCA-----GGATC---------------------------------------AAGGCTCAGGAAGGACTTCAGTGAAGGTTCTGGAGAAAGACAAGGAGGAAGCAGAAGGTGATTTCAGGAGGCCCTGGAAGTACCAATCAGTAAGTTCTGCACCCAGGGACCCAGAAAAGCAGCATCTGGAAAACAAGCCACAGGTCCATCTGGACAGGAAGGTGGGGGAGATCAAGGAGGGCTGGATCCCTGTGTCTGTGCATCGCTCCTAATTCATGGCCAAACATGCCATTCCCAAGTCTGACACCCACAGGAAATCGAGAAAGGTGACATCCTGGAGGGGTGGGAAAGCCCACGTGAACACCTCCCAGGAGCTGTCCTTCCTCCATCCCTGCACCCAGCAGATGCTGGAAGCACATCTTTTCAAGTTCTGTGTGAGGCACAGGTGGGGTCCAGAACTTCAGTCCTTAGAGCCCATAAATGTCTAGTCAGGGGAGGCTCAGCCTCCACCCCTCCCACACTCCACCATTCTCCCCTGGGCCTCCTGGGAATCTCTGGCTCAATCTGTAGCCAAGGTTGCCATTTTGTCGGGAAAACCTCCCCAGAATGGTCCAGGAGACAATAGAACAACAAGCAAGTCAGCCCCCACCATGAGTGGCCCTGTCCCTGCCCCACCAACTGAGCAGGAGGAAGTCCAGAGGGTCCCAAGAGGGTCCCAGTCAGCTGACACCCATGAGCAATCAGAGGCCTCTCTGACTGGACAGGAGGGCAGGGCATCTTCTCAGTCCCCCATATGCAACCTTGTAGGCAGAACCTGGCAGAGAGGGACTGTCCTGGGGTCCGGG------AAACCCAGACTCGAGGGGAGTGTGGGTTCAGAAATGGCTGGGAATGAGGCATGGCTTGAGACTGAGAGCATGTCCCCAGGAGACCCCTGTCATAGCAGA-----GCCCTGCAAGAGCTCAGCATGGGGTCCCAGTGGGCAAGG
s panTro5.chr9                  65532064 1019 + 116767853 AGGATGTGCAGAAGACCGGGTTCAGGAGCTCTGGAAGGTTCTCTGAGAAGGGGTGCTTAGGGTCCAAACTAGGGCCGGACCCAAGCCGGGATC---------------------------------------AAGGCTCAGGAAGGACTTCAGTGAAGGCTCTGGACGAAGACAAGGAGG---CAGAAGGTGACTTACGGAGATCCTGGAAGTACCAATCAGTAAGTTCCACACCTAGGGACCCAGACAAGGAGCATCTGGAAAGCAAGCTGCAAATCCGTCTGGCCAGGAAGGTAGGGGAGATCAAAGAGGGCTGGATCCCCATGCCTGTGCGTCGCTCCTGGCTCATGGCCAAATGTGCTGTTCCCAAGTCTGACACCCACAGGAAACCTGGGAAGCTGGCATCCTGGAGGGGTGGGAAAGCCCACGCGAACACCTCCCAGGAGCTTTCCTTCCTCCATCCCTGCACCCAGCAGATACTGGAAGTACATCTTGTAAGGTTCTGTGTGAGGCACAGCTGGGGTACAGACCTCCAGTCCCTGGAGCCCATAAATGTCTGGTCAGGTGAGGCTCAGGCCCCACCCTTCCCACAATCCACCTTTACCCCCTGGGCCTCCTGGGTATCTCGGGTTGAATCTGTACCCAAGGTTCCCATTTTCCTGGGAAAACGTCCTCAGAATGGTCCAGGAGACAACAGAACAACAAGCAAGTCAGTCCCGACCTTGAGTGGCTCTCTCGCTGCCCCACCGCCTGAGCAGGAGGGAGTCCAGAGGCCCCCGAGAGGGTCCCAGTCAGTTGATACCCATGGGCGATCAGAGGCCTTTCCGACTGGACACAAGGGCAGGGGGTGTTCTCAGCCCCCAACATGCAGCCTTGTGGGCAGAACCTGGCAGAGCAGGACTGTCCTGGAATCCGGGAAACCCAAACCCAGACTAAAGGGGAGTATGGGTTCAGAAATGGCTGGGAACGAGGCATGGCTTGAGAGTGAGAGCATGTCCCCAGGAGACCCCTGTAGTAGCAAA-----GCCCTGCAAGAGCTCAGCATAGGGTCCCAGTGGGCAAGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87032713 1019 + 138149186 AGGATGTGCAGAAGACCGGGTTCAGGAGCTCTGGAAGGTTCTCTGAGAAGGGGTGCTTAGGGTCCAAACTAGGGCCGGACCCAAGCCGGGATC---------------------------------------AAGGCTCAGGAAGGACTTCAGTGAAGGCTCTGGACGAAGACAAGGAGG---CAGAAGGTGACTTACGGAGATCCTGGAAGTACCAATCAGTAAGTTCCACACCTAGGGACCCAGACAAGGAGCATCTGGAAAACAAGCTGCAAATCCGTCTGGCCAGGAAGGTAGGGGAGATCAAAGAGGGCTGGATCCCCATGCCTGTGCGTCGCTCCTGGCTCATGGCCAAATGTGCTGTTCCCAAGTCTGACACCCACAGGAAACCTGGGAAGCTGGCATCCTGGAGGGGTGGGAAAGCCCACGCGAACACCTCCCAGGAGCTTTCCTTCCTCCATCCCTGCACCCAGCAGATACTGGAAGTACATCTTGTAAGGTTCTGTGTGAGGCACAGCTGGGGTACAGACCTCCAGTCCCTGGAGCCCATAAATGTCAGGTCAGGTGAGGCTCAGGCCCCACCCTTCCCACAATCCACCTTTACCCCCTGGGCCTCCTGGGTATCTCGGGTTGAATCTGTACCCAAGGTTCCCATTTTCCTGGGAAAACGTCCTCAGAATGGTCCAGGAGACAACAGAACAACAAGCAAGTCAGTCCCGACCTTGAGTGGCTCTCTCGCTGCCCCACCGCCTGAGCAGGAGGGAGTCCAGAGGCCCCCGAGAGGGTCCCAGTCAGCTGATACCCATGGGCGATCAGAGGCCTTTCCGACTGGACACAAGGGCAGGGGGTGTTCTCAGCCCCCAACATGCAGCCTTGTGGGCAGAACCTGGCAGAGCAGGACTGTCCTGGAATCCGGGAAACCCAAACCCAGACTAGAGGGGAGTATGGGTTCAGAAATGGCTGGGAACGAGGCATGGCTTGAGAGTGAGAGCATGTCCCCAGGAGACCCCTGTAGTAGCAAA-----GCCCTGCAAGAGCTCAGCATAGGGTCCCAGTGGGCAAGG
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           52066 1009 -    142253 AGGATGTGCAGAAGGCAGGGCTCAGGAGCTCTGGAAGGTTCTCTGGGAAGGGGTGCTTAGGGTCCAAACTAGAGCCAGAACCA-----GGATC---------------------------------------AAGGCTCAGGAAGGACTTCAGTGAAGGTTCTGGAGAAAGACAAGGAGGAAGCAGAAGGTGATTTCAGGAGGCCCTGGAAGTACCAATCAGTAAGTTCTGCACCAAGGGACCCAGAAAAGCAGCATCTGGAAAACAAGCCACAGGTCCATCTGGACAGGAAGTTGGGGGAGATCAAGGAGGGCTGGATCCCTGGGTCTGTGCATAGCTCCTAATTCATGGCCAAACATGC-ATTCCCAAGTCTGACACCCACAGGAAATCGAGAAAGGTGACATCCTGGAGGGGTGGGAAAGCCCACGTGAACACCTCCCAGGAGCTGTCCCTCCTCCATCCCTGCACCCAGCAGATGCTGGAAGCACATCTTTTCAAGTTCTGTGTGAAGCACAGGTGGGGTCCAGATCTTCAGTCCTTGGAGCCCATCAATGTCTAGTTAGGGGAGGCTCAGCCTCCACCCCTCCCACACTCCACCATTCTCCCATGGGCCTCCTGGGAATCTCTGGCTGAATCTGTAGCCAAGGTTGCCATTTTATCGGGAAAACCTCCCCAGAATGGTCCAGGAGACAATAGAACAACAAGCAAGTCAGCCCCCACCATGAGTGGCCCTGTCCCTGCCCCACCAACTGAGCAGGAGGAAGTCCAGAGGGTCCCAAGAGGGTCCCAGTCAGCTGACACCCATGAGCAATCAGAGGCCTCTCTGACTGGACAGGAGGGCA-GGCATCTTCTCAGTCCCCCATGTGTAACCTTGTAGGCAGAACCTGGCAGAGAGGGACTGTCCTGGGGTCCGGG------AAACCCAGACTCGAGGGGAGTGTGGGTTCTGAAATGGCTGGGAATGAGGCATGGCTTGAGACTGAGAGCATGTCCCCAGGAGACCCCTGTCATAGCAGA-----GCCCTGCAAGAGCTCAGCATGGGGTCCCAGTGGGCAAGG
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75915531 1011 + 121039945 AGGTTGTGCAGAAGGCAGAGCTCAGGAGCTCTGGAAGGTTCTCTGGGAAGGCGTGCTTAGGGTCCAAACTAGAGCCAGAACCA-----GGATC---------------------------------------AAGGCTCAGGAAGGACTTCAGTGAAGGTTCTAGAGAAAGACAAGGAGGAAGCAGAAGGTGATTTCAAGAGGCCCTGGAAGTATCATTCAGTAAGTTCTGCACCCAGGAACCCAGGCAAGAAGCATCCGGAAAACAAGCCGCAGGTGTGTCTGGACAGGAAGGTGGGGGAGATCAAGGAGGGCTGGATCCCTGTGTCTGTGCATCGCTCCTGGTTCATGGCCAAACATGCCGTTCCCAAGTCTGACACCCACAGGAAACTAGGAAAGGTGACATCCTGGAGGGGTGGGAAAACCCACGTGAACACCTCCCAGGAGCTTTCCTTCCTCCATCCCTGCACCCAGCAGATGCTGGAAGCACATCTTTTCAAGTTCCATGTGAGGCACAGGTGGGGTCCAGACCTTCAGTCCTTGGAGCCCATAAATGTCCAGTCAGGTGAGGCTCAGCCTCCACCCCTCCCACATTCCACCATTCTCCCCTGGGCCTCCTGGGAATCTCTGGCTGAATCTGTAGCCAAGGTTGCCATTTTATTGGGAAAACCTCCCCAGAATGGTCCAGGAGACAATAGAACAACAAGCAAGTCAGTCCCCATCATGAGTGGCCCTGTCCCTGCCCCACCACCTGAGCAGGAGGAAGTCCAGAGGCTCCCAAGAGGGTCCCAGTCAGCTGACACCCATGAGCAATCAGAGGCCTCTCTGACTGGACAGGAGGACAGGGCATCTTCTCAGCCCCCCATGTGCCACCTTGTAGGCAGAACCTGGCAGGACGGGACTGTCCTGGGGTCCAGG------AAACCCAGACTCGAGGGGAGTGTGGGTTCAGAAATGGCTGGGAATGAGGCATGGCTTGAGACCGAGAGCATGTCCCCAGGAGACCCCTGTCGTAGCAGA-----GCCCTACAAGATCTCAGCATAAGGTCCCAGTGGGCAAGG
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     52177 1007 -     93100 AGGGTATGCAGAAGACAGGGCTCAGGAGCTCTGGAAGGTTATCTAGGAAGAGGTGCTTAGGGTCCAAACTAGAGGCACAACCAAGCCAGGATC---------------------------------------AAGGCACAGGAAGGAATTCAGTGAAGGTTCTGGAGAAAGACAAGGAGGAGGCAGACGGTCACTTCAGGAAGCCCTGGAAGTACCAATCAGTAAGTTCCACACCCAGGGACCCAGACAGGAAGCATTTGGAAAACAAGCTGCAGGTCCGTATGGACAGGAAGGTGGGGGAGATCAAGGAGGGCTGGATCCCTGTATCTGTGTATTGCTCCTGGTTCATGGCCAAACGTGCTGTTCCCAAGTCTGACACCCACAGGAAACTGGGGAAGCTGGCATCCTGGAGGGGTGGGAAAGCCCACATGAACACCTCCCAGGAGCTTTCCTTCCTTCATCCCTGCACCCGGCAGATGCTGGAAGCACATCTTTTCAGGTTCTGTGTGAGGCACAGGTGGGGTCCAGACATCCAGTCCCTATAGCCCATAAATGTCCAGTCAGGTAAGGCTCAGCCCCCAACCCTCCCATACTCCACATTTCCCCTCTGGGCCTCCTGGGAATCTCGGGTTGAATCTGTAGCCAAGTTTGTCATTTTATTGGAAAAACCTCCCCAGAATGGTCCAGGAGACAACAGAACAACAGGCAAGTCAGCCCC-ACTGTGAGTTGCCCTGTCCCTGCCCCACCACCTGAGCAGGAGGAAGGCCAGAGGGCTCCAAGATGGTCCCAGTCAGCTGACACCCATAAGCAATTAGAGGCCTCTCCGACTGGACAGAAGGACAGGGCGTCTTCTCAGTCCCCCATGTGCAGCCTTGTAGGCAGAACCTGGCAGAGCAGGACTGTCCTGGGGTCTGGGAAATCCAACCTTG--------------AGGGGTTCAGAAATGGCTGGGAATGAGGCATGGCTTGAGATTGAAAGCATGTCCCCAGGAAACTCCTGTCATAACAGA-----GCCCTGCAAGAGTTCTGCATAGGGTCCCAGTGGGCAAGG
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s cerAty1.NW_012000030v1         1928894 1022 +   8072957 AGGATGTGCAGAAGACCGGGTTCAGGAGCTCCGGAAGGTTCTCTGGGAAAGGGTGCTTACGGTCCAAACTAGGGCCAGACCCACGCCGGGATC---------------------------------------GAGGCTCAGGAAGGACCTCAGTGAAGTTTCTGGAGGAAGACAAGGAGGAGGCGGAAGGTGACATGTGGAGGCCCTGGAAGTACCAATCAGTAAATTCTGCACCCAGGGACCCAGACAAGAAGCATCTGGAAAACAAGCTGCAAATCCACCTGGCCAGGAAGGTGGGGGAGATCAAAGAGGGCTGGATCCCCGTGCCTGTGCGTCGCTCCTGGCTCATGGTCAAATGTGCTGTTCCCCAGTCTGACGCCCACAGGAAACCCGGGAAGCTGGCATCCTGGAGGGGTGGGAAAGCCCACGCGAACACCTCCCGGGAGCTTTCCTTCCTCCCGCCCTGCACCCAGCAGATGCTGGAAGTGCATCTTCTAAGGTTCCGTGTGAGACACAGGTGGGGTCCAGACCTCCAGTCCCTATAGCCCATAAATGTCCAGTCAGGTAAGGCTCAGCTCCCACCCCTCCCACACTCCACCTTTCCCCTCTGGGCCTCCTGGGAATCTCGGGACGAGTCTGCAGCCAACGTTCCCATTCTCCTGGGAAAACGTCCTCAGAACGGTCCAGGAGACAACAGAACAAGAAGCAAGTCAGTCCTGACGGTGAGTGGCGCTCTCGCTTCCACAGCACCTGAGCGGGAGGAAGCCCAGAGGCCCCTGAGAGGGTCCCAGTCAGCTGACACCCATGGGCGATCAGAGGCCTTTCCAAGTCGACATGAGGACTGGGGGTTTTCTCAGCCCCCCACATGCAGCCTTGTGGGCAGAACCTGGCAGAGCAGGACTGTCCTGGCATCTGGGAAACCCAAACCCAGACTAGAGGGGAGTATGGGTTCAGAAATGCCTGGGAACGAGGCAAGGTTTGAGAGTGAGAGCATGTTCCCAGGAGACGTGTGTAGTAGCAGA-----GCCCTGCAAGAGCTCAGCATAGGGTCCCAGTGGGCAAGG
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102644982 1022 + 108555830 AGGATGTGCAGAAGACCGGGTTCAGGAGCTCCGGAAGGTTCACTGGGAAGGGGTGCTTACGATCCAAACCGGGGCCAGACCCAAGCTGGGATC---------------------------------------GAGGATCAGGAAGGACCTCAGTGAAGTTTCTGGAGGAAGACAAGGAGGAGGCAGAAGGTGACATGTGGAGGCCCTGGAAGTACCAATTAGTAAATTCTGCACCCAGGGACCCAGACAAGAAGCATCTGGAAAACAAGCTGCAAATCCATCTGGCCAGGAAGGTGGGGGAGATCAAAGAGGGCTGGATCCCCGTGCCTGTGCGTCGCTCCTGGCTCATGGTCAAATGTGCTGTTCCCCAGTCTGACGCCCACAGGAAACCCGGGAAGCTGACATCCTGGAGGGGTGGGAAAGCCCACGCAAACACCTCCCAGGAGCTTTCCTTCCTCCAGCCCTGCACCCAGCAGATGCTGGAAGTGCATCTTCTAAGGTTCCGTGTGAGACACAGGTGGGGTCCAGACCTCCAGTCCCTGGAGCCCATAAACGTCCGGTCAGGTGAGGCTCAGGCCCCGCCCTTCCCACAATCCACCTTTCCCCCCTGGGCCTCCTGGGAATCTCGGGACGAGTCTGCAACCAACGTTCCCATTTTCCTGGGAAAACGTCCTCAGAACGGTCCAGGGGACAACAGAACAAGAAGCAAGTCAGTCCTGACGGTGAGTGGCGCTCTCGCTTCCGCACGACCTGAGCAGGAGGAAGCCCAGAGGCCCCTGAGAGGGTCCCAGTCAGCTGACACCCATGGGCGATCAGAGGCCTTTCCAAGTCGACATGAGGACAGGGGGTCTTCTCAGCCCCCCACATGCAGCCTTGTGGGCAGAACCTGGCAGAGCAGGACTGTCCTGGCATCCGGGAAACCCAAACCTAGACTAGAGGGGAGTATGGGTTCAGAAATGCCTGGGAAGGAGGCAAGGTTTGAGAGTGAGAGCATGTCCCCAGGAGACCTGTGTAGTAGCAGA-----CACCTGCAAGAGCTCAGCATAGGCTCCCAGTGGGCAAGG
i chlSab2.chr12                C 0 I 1940
s manLeu1.NW_012105664v1         1290371 1020 -   1339302 AGGATGTGCAGAAGACCGGGTTCAGGAGCTCCGGAAGGTTCTCTGGGAAAGGGTGCTTACGGTCCAAACCAGGGCCAGACCCAAGCCGGGATC---------------------------------------GAGGCTCAGGAAGGACCTCAGTGAAGTTTCTGGAGGAAGACAAGGAGGAGGCGGAAGGTGACATGTGGAGGCCCTGGAAGTACCAATCAGTAAATTCTGCACCCAGGGACCCAGACAAGAAGCATCTGGAAAACAAGCTGCAAATCCACCTGGCCAGGAAGGTGGGGGAGATCAAAGAGGGCTGGATCCCCGTGCCTGTGCGTCACTCCTGGCTCATGGTCAAATGTGCTGTTCCCCAGTCTGACGCCCACAGGAAACCCGGGAAGCTGGCATCCTGGAGGGGTGGGAAAGCCCACGCGAACACCTCCCGGGAGCTTTCCTTCCTCCAGCCATGCACCCAGCAGATGCTGGAAGTGCATCTTCTAAGGTTCCGTGTGAGACACAGGTGGGGTCCAGACCTCCAGTCCCTGGAGCCCATAAATGTCTGGTCAGGTGAGGCTCAGGCCCCGCCCTTCCCACAATCCACCTTTCCCCCCTGGGCCTCCTGGGAATCTCGGGACGAATCTGCAGCCAACGTTCCCATTCTCCTGGGAAAACGTCCTCAGAACGGTCCGGGAGACAACAGAACAAGAAGCAAGTCAGTCCTGACGGTGAGTGGCGCTCTCGCTTCCGCAGCACCTGAGCAGGAGGAAGCCTAGAGGCCCCTGAGAGGGTCCCAGTCAGCTGACACCCATGGGCGATCAGAGGCCTTTCCAAGTCGACATGAGGACAGGGGGTTTTCTCAGCCCCCCACATGCAGCCTTGTGGGCAGAACCTGGCAGAGCAGGACTGTCCTGGCATCCGGGAAACCCAAACCCAGACTAGAGGGGAGTATGGGTTCAGAAATGCCTGGGAACGAGGCAAGGTTTGAGAGTGAGAGCATGTCCCCAGGAGACGTGTGTAGTAGCAGA-----GCCCTGCA--AGCTCAGCATAGGGTCCCAGTGGGCAAGG
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6786397 1007 -   6934359 AGGATATGCAGAAGACAGGGTTCAGGAGCTCTGGAAGGTTCTCTGGGAAGAGGTGCTTAGGGTCCAAACTAGAGCCACAACCAAGCCAGGATC---------------------------------------AAGGCACAGGAAGGAATTCAGTGAAGGTTCTGGAGAAAGACAAGGAGGAGGCAGAAGGTGACTTCAGGAAGCCCTGGAAGTACCAATCAGTAAGTTCTACACCCAGGGACCCAGACAGAAAGCATTTGGAAAACAAGCTGCAGGTCCATCTGGACAGGAAGGTGGGGGAGATCAAGGAGGGCTGGATCCCTGTGTCTGCATGTCACTCCTGGCTCATGGCCAAACGTGCTGTTCCCAAGTCTGACACCCACAGGAAACTGGGGAAGCTGACATCCTGGAGGGGTGGGAAAGCCCACGTGAACACCTCCCAGGAGCTTTCCTTCCTTCATCCCTGCACCCGGCAGATGCTGGAAGCACATCTTTTCAGGTTCCATGTGTGGCACAGGTGGGGTCCAGACCTCCAGTCCCTATAGCCCATAAATGTTCTATCAGGTAAGGCTCAGCCCCCACCTCTCCCACACTCCACATTTTCCCTCGGGGCCTCCTGGGAATCTCAGGTTGAATCTGTAGCCAAGTTTGTCATTTTATTGGAAAAACCTCCCCAGAATGATCCAGGAGACAACAGAACAACAGGCAAGTCAGCCCC-ACTGTGAGTTGCCCTGTCCCTGCCCCACCACCTGAGCAGGAGGAAGGCCAGAGGGCTCCAAGATGGTCCCAGTCAACTGGCACCCATAAGCAATTAGAGGCCTCTCTGACTGGACAGGAGGACAGGGCGTCTTCTCAGTCCCCCATCTGCAGCCTTGTAGGCAGAACCTGGCAGAGCAGGACTGTCCTGGGGTCTGGGAAATCCAACCTTG--------------AGGGGTTAAGAAATGGCTGGGAATGAGACATGGCTTGAGATTGAGAGCATGTCCCCAGGAAACCCCTGTCATAACAGA-----GCCCTGCAAGAGTTCTGCATAGGGTCCCAGTGGGCAAGG
i colAng1.NW_012115910v1       C 0 C 0
s calJac3.chrUn_GL286352            6355 1057 -     21860 AAGATAGGCAGAAGACAGGATTCAGGAGCTCTGGAAGGTTCTCTGGGAAGGGGTGCTTAAGGTCCAAATGAGAGCCAGACCCAAGCCAGGATCGAGGGCAAGAGCTGGAGAGGACCCCAGCAGATTTACCTAGAGGCTCAGGAAGGACCTCAGTGAAGCTTCTGGAGGAAGACAAGCAGGAGGCAGAAGGCGACTTCAGGAGGCCCTGGAAGAACCAATCAGTAAGTTCCGCATCCGGGGACCCAGAGAAGAAGCATTCGGAGAATAAGCTGCAAGTCCATCTGGGCAGGAAGGTGGGGGAGATCAAGGAGTGCTGGATCCCCACGCCTGTGCATCGCTCCCAGTTCATGGCCAAATGTGCTTTTCCCAAGTCTGACACCCACCAGGACCCTGGAAAGCTGGCATCCAGGAGAGGTGGGAAAGCCCACGTGAACACCTCCCAGGAGCTTTCCTTCCTCCATCCCTGCACCCAGCAGATGCTGGAAGCACATCTTTTAAGGTTTCGTGTGAGGCACAGGTGGGGTCCAGACTTCCGGTCCCTGAAGCCCATAAACGTCCAGTCACGTGAGGCTCAGCCCCTGCCCCTCCCACACTCCACCTTTCCCCGCTTGGCCTCCTGTGAATCTCAGGTTGAATCTGTAGCTGAGATTGCCACTTTCTTGGGAAATCCTCCCCAGAATGGTCTAGGAGACAGCTGGACAACAAGCAAGTCAGTCCCCACCATGAGTGGCCCTCTCCCTCCCCCATCACCTGAGCAGGAGGAAGTCCAGAGGGCCCCGAGAGGGTCCCAGTCAGCTGACATCCGTGGGCGATCAGAGGTGTCTCCGACTGGACAGGAAGACAGGGAG---TCTCAGCCCCTCACATGCAGCCCTGGGGGCAGAACCTGGCACAGGGAGATGGTCCCAGGATCCAGG------GAAACCATCCTAGAGGTGAGTCTGAGTCCAGCAATGACTGGGAATGAGCTGTGGCCTGAGAGCGAGACCTCATCCCTGGGAGACCCCTGTAGTAGCAGAGTCCTGTCCTGCAGGAGCTCAAGGTAGGCTCCCTGTGGGCAAGT
i calJac3.chrUn_GL286352       I 14 C 0
s saiBol1.JH378203               2615107 1052 -   8192610 AGGTTGGGCAGAAGACAGGATTCAGGAGCTCTGGAAGGTTCTCTGGGAAGGGGTGCTTAAAGTCCAAACGAGAGCCAGACCCAAGCCAGGATGGAGGGCAAAAGCTGGAGAGGATCCCAGCAGATCCACCCAGAGGCTCAGGAAGGACCTCGGTGAAGCTTCTGGAGGAAGACAAGCAGGAGGCGGAAGGTGACTTCAGGAGGCCCTGGAAGAACCAGTCAGTAAGCTCCGCACCCAGGGACCCAGACAAGAAGCATTCGGAAAATAAGCTCCACGTGCATCTGGGCAGGAAGGTGGGGGAGATCAAGGAGGGCTGGATCCCCATGCCTGTGCGTCGCTCCCGGCTCATGGCCAAACGTGCTGTTCCCAAGTCTGACACCTGCCAGGACCCTGGGAAGCTGGCACCCAGGAGAGATGAGAAAGCCCACGTGAACACCTCCCAGGAGCTTTCCTTCGTCCGTCCCTGCACCCAGCAGATGCTGGAAGCACATCTCTTAAGGTTTCGTGTGAGGCACAGGTGGGGTCCAGACCTCCGGTCCCTGGAGCCCATAAACGTCTGGTCACGTGAGGCTCAGCCCCCGCCGCCCCCACACGCCACTTGTCCCCCCTTGGCCTCCTATGAATCTCAGGTTGAATCTGTAGCTGCGGTTGCCACTTTCCTGGGAAAACCTCCCCAGGATGGTCCAGGAGACAGCTGGACAACAAGCAAGTCAATCCCCACCGTGAGCGGCGCTCTCCCTCCCCCGCCACCGGAGCAGGAGGAAGTCCAGAGGACCCTGAGAGGGTCCCAGTCAGCTGACACCCGTGGGCGATCAGAGGTGTCTCCGACTGGACAGGAGGACAGGGAG---TCTCAGCCCGTCACTTGCAGCCCTGGGGACAGAACCTGGCACAGGGAGATGGTCCTAGGATCCGGG------GAAACCATCCTAGAGGCGAGTCCATGTCCAGCAATGACTGAGAATGAGCCGTGGCCTGACAGCGAGAGCACGTCCCTGGGAGACCCCTGTAGTAGCAGA-----GCCCTGCAGGAGCTCAAGGTAGGGTCCCCGTGGGCAAGT
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7148758 1052 +   9895066 AAGATGGGCAGAAGACAGGATTTAGGAGCTCTGGAAGGTTCTCTGGGAAGGGGTGCTTAAGGTCCAAGCAAGAGCCAGATCCAAGCCAGGATCGAGGGCAAAAGCTGGAGAGGATCCCAGCAGATCCATCCAGAGGCTCAGGAAGGACCTCAGTGAAGCTTCTGGAGGAAGACAAGCAGGAGGCAGAAGGTGATTTCAGGAGGCCCTGGAAGAACCAATCAGTAAGTTCCGCACCCGGGCACCCAGACAAGAAGCATCCGGAAAATAAGCTGCAAGTCCATCTGGGCAGGAAGGTAGGGGAGATCAAGGATGGCTGGATCCCCATGCCTGTGCGTCGCTCCCGGCTCATGGCCAAACGTGCTGTTCCCAAGTCTGACACCTGCCAGGACCCTGGGAAGCTGGCATCCAGGAGAGGTGGGGAAGCCCATGTGAACACCTCCCAGGAGCTTTCCTTCCTCCATCCCTGCACCCAGCAGATGCTGGAAGCGCATCTTTTAAGGTTTTGTGTGAGGCACAGGTGGGGTCCAGACCTCCGGTCCCTGGAGCCCATAAACGTCTGGTCATGTGAGGCTCAGCTCCCGCCCCCCCCACATTCCACCTGTCCTCCCTTGGCCTCCTATGAATCTCAGGTTGAATCTGTAGCTGAGGTTGCCACTTTCCTGGGAAAATCTCTCCAGAATGGTCCAGGAGACAGCTGGACAACAAGCAAGTCATTCCCCACCGTGAGTGGCCCTCTCCCTCCCCCACCACCGGAGCAGGAGGAAGTCCAGAGGGCCCCGAGAGGGTCCCAGTCAGCTGACACACATGGACGATCAGAGGTGCCTCCGACTGGACAGGAGGACAGGGGG---TCTCAGCCCCTCACGTGCAGCCCTGGGGGCAGAACCTGGCACAGGGAGATGGTCCCAGGATCCAGG------GAAACCATTCTAGAGGCGAGTCTGACTCCAGCAATGACTGAGAATGAGCCGTGGCCTGAGAGTGAGAGCACATCCCTGGGAGACCCCTGTAGTAGCAGA-----GCCCTGCAGGAGCTCAAGGTAGGGTCCCCATGGGCAAGT
i cebCap1.NW_016107368v1       C 0 C 0
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e macFas5.chr15                106275291 10799 + 112612857 M

a score=676047.000000
s hg38.chr15_KI270851v1_alt        50157 141 +    263054 GCCAGAGATGCCCTGGAGGCACTGGAGGCCAAGGAGGAAAAGCCCCCTGATTGGAAAGTCACCTTGGGAGCCAGTGTGAGGGCAAGATCAGGAAGTGTTCAGGTGGATCTGAGGAGCACAGGGACTCTGGGGACCACTAGT
s panTro5.chr9                  65533083 138 + 116767853 GCTGAAGATGCCCTGCAGGCACTGAAAGT---GGGGGAGAAGCCCCCCACTTGGGAAGTCACCTTGGGAGCCAGTGTGAGGGCAAGTTCGGGAAGCGTTCAGGAGGATCTGAGGAGCACAGGGGCTCTGGGGACCACTGGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87033732 138 + 138149186 GCTGAAGATGCCCTGCAGGCTCTGAAAGT---GGGGGAGAAGCCCCCCACTTGGGAAGTCACCTTGGGAGCCAGTGTGAGGGCAAGTTCGGGAAGCGTTCAGGAGGATCTGAGGAGCACAGGGGCTCTGGGGACCACTGGT
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           53075 141 -    142253 GCCAGAGATGCCCTGGAGGCACTGGAGGCCAAGGAGGAAAAGCCCCCTGATTGGAAAGTCACCTTGGGAGCCAGTGTGAGGGCAAGATCAGGAAGTGTTCAGGTGGATCTGAGGAGCACAGGGACTCTGGGGACCACTAGT
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75916542 141 + 121039945 GCCAAAGATGCCCTGGAGGCACTGGAGGCCGAGGAGGAGAAGCCCCCTGATCAGAAAGTCACCTTGGGAGCCAGTGTGAGGGCAAGATCAGGAAGTGTTCAGGTGGATCTGAGGAGCACAGGGGCCCTGGGGACCACTTAT
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     53184 141 -     93100 GCCAAAGACAACCTGGAAGCACTGGAGGCTGAGGAGGAGAAACCCCCTGCTTCAGAAGCCACCTTGGGAGCCAGTGTGAGGGCAAGTTCAGGAAGTGTTCAGGTGGGCCTGAGGAGCACAGAGGCTGTGGGGACCACTAGT
i rheMac8.chrUn_NW_014998353v1 C 0 I 33
s cerAty1.NW_012000030v1         1929916 141 +   8072957 GCCGAAGACGCCCTGGAGGCACTGAAGGTGGGGGAGGAGAAGCCCCCCGCTTGGGACGTCACCGTGGGAGCCAGTGTGAGGGCAAGTTCAGGAAGCGTTCAGGTGGATCTGAGGAGCGCGGGGGCTCTGGGGACCACTGAT
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012105664v1         1291391 141 -   1339302 GCCGAAGACGCCTTGGAGGCACTGAGGGTGGGGGAGGAGAAGCCCCCCGCTTGGGACGTCACCATGGGAGCCAGTGTGAGGGCAAGTTCAGGAAGCGTTCAGGTGGATCTGAGGAGCGCGGGGGCTCTGGGGACCACTGAT
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6787404 141 -   6934359 GCCAAAGACGCCCTGGAAGCACTGGAGGCCGAGGAGGAGAAGCCCCCTGCTTGGGAAGCCACCTTGGGAGCCAGTGTGAGGGCAAGTTCAGGAAGTGTTCAGGTGGACCTGAGGAGCACAGGGGCTGTGGGGACCACTAGT
i colAng1.NW_012115910v1       C 0 C 0
s calJac3.chrUn_GL286352            7412 138 -     21860 GCCGAGGACACCCTGGAGCCCCTGGAGGTGGGGGAGAAGAAGCCTCCTGCTTGGGAAGTCACCCTGGAAACCAGCATGAAGGCAAATTCGGGAAGCATTCAGGTGGATCT---GAGATCAGGGGCTCTGGGGACCACTAGT
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2616159 141 -   8192610 GCTGAGGACGCTCTGGAGCCCCTGGAGGTGGGGGAGGAGAAGCCTCCCGCTTGGGAAGTCACCTTGGAAGCCAGCGTGAAGGCAAATTCCGGAAGCATTCAGGTGGATCTGAGGAGATCAGGGGCTCTGGGGACCACTAGT
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7149810 141 +   9895066 GCTGAGGACGCCCTGGAGCCCCTGGAGGTCGGGGAGGAGAAGCCTCCCACTTGGGAAGTCACCTTGGAAGCCAGCATGAAGGCAAATTCGGGAAGCATTCAGGTGGATCTGAGGAGATCAGGGGCTCTGGGGACCACTAGT
i cebCap1.NW_016107368v1       C 0 C 0
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e chlSab2.chr12                102646004 1940 + 108555830 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=14287.000000
s hg38.chr15_KI270851v1_alt        50298 4 +    263054 AACC
s panTro5.chr9                  65533221 4 + 116767853 AACC
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87033870 4 + 138149186 AACC
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           53216 4 -    142253 AACC
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75916683 4 + 121039945 TACC
i nomLeu3.chr6                 C 0 C 0
s cerAty1.NW_012000030v1         1930057 4 +   8072957 AACC
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012105664v1         1291532 4 -   1339302 AACC
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6787545 3 -   6934359 -GTC
i colAng1.NW_012115910v1       C 0 I 28
s calJac3.chrUn_GL286352            7550 4 -     21860 AACC
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2616300 4 -   8192610 AACC
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7149951 4 +   9895066 AATC
i cebCap1.NW_016107368v1       C 0 C 0
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e rheMac8.chrUn_NW_014998353v1     53325 33 -     93100 I
e chlSab2.chr12                102646004 1940 + 108555830 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=2968844.000000
s hg38.chr15_KI270851v1_alt        50302 594 +    263054 CCTCAGTGTCTACAATCTGTGTTGCTCAGGATCCAGGGCAGCTGTGCCTGAAAGCACAGGTTGTCAGTGAGATTGCGCTCATAGTGCAGGTGGACTCAGAGGAGCAGCTGCCAGGCCGTGTTTCCAGCATCCTCCTCCAGGAGGGCGCCACAGGCCTGTGCCTTCCAGGCCGCCATGTGGACATGCTCCCAGCCACATACAGGCCACCCACTTAGGCCCCTCTGTCCACCTCCCAGAGTGTGCTCAGTAGGAGGAACACGACAGCTTCCCAGGGGCCATGTGCCCTCCTATGGAAGGGAGGGGACAGACTGGGGCAGCAGGAACCTGGGAGCCCAAAAGTGAAGGCCCCACAGAAGAGTCAGAAGATGCTGGGCTCTTTGGACAAGGGCAAGGCCCACAGGAGGCCCAGACCAGGGGAGCAGGGACACAGGTCCAAAGGACCCAGGACCTCCCAAGCCAGTGGGAGGAGCCACCCTGCCCACACGAGGGAAATAGGAGACAAACAAGAAAGGAAATACAATCAGCCTCAGCCAGAGAAGGGACAGGCACCACCAGAAAGCAACTTCCAGAGAAAGATCAGTCACCGTCCACAGG
s panTro5.chr9                  65533225 589 + 116767853 CCTCAGCGTCTTCAGTCTGTGTTGCTCAGGATCCAGAGCAGCTGCACCTGAAAG--CAGGTGGTCAGTGAGATTGCGCTTATAGTGCAGGTGGACTCAGAGGAGCAGCTGCCAGGCCGTGCCCCGGGCATCCTCCTCCAGGACGGCGCCACAGGCCCGTGCCTTCCAGGCCGCCACATGGACATGCTCACCGCCGCAGACAGGCTGCCCACTCAGGCTCCTCTGTCCACCTCCCAGAGTGTGTCTGGT---AAGAACATGACAGCTTCCCAGGGGCCATGTGCCCTCCTATGGAAGGGAGGGGACAGTCCAGGGCAGCAGGAGCCTGGGAGCCCAAAAGCAAAGGCCCCACAGAAGAGTCAGAAGATGCTGGGCTGTGCGGACAAGGGCGAGGCCCACAGGAGGCCCAGAACAGGGGAGCAGGGACACAGGTCCAAGGGACCCAGGACCTCTGAAGCCAGTGGGAGGAGCCACCCTGCCCAAGCCAGGGAAATAGGAGACAAACAAGAAAGGAAATACAACCAGCTTCAGCTGGAGAAGGGACAGACACCACCAGAAAGCCACTTCCAGAGAAAGATCAGTCACCATCCACAGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87033874 588 + 138149186 CCTCAGCGTCTTCAGTCTGTGTTGCTCAGGATCCAGAGCAGCTGCACCTGAAAG--CAGGTGGTCAGTGAGATTGCGCTCATAGTGCAGGTGGACTCAGAGGAGCAGCTGCCAGGCCGTG-CCCTGGCATCCTCCTCCAGGACGGCGCCACAGGCCCGTGCCTTCCAGGCCGCCACATGGACATGCTCACTGCCGCAGACAGGCTGCCCACTCAGGCTCCTCTGTCCACCTCCCAGAGTGTGTCTGGT---AAGAACATGACAGCTTCCCAGGGGCCATGTGCCCTCCTATGGAAGGGAGGGGACAGTCCAGGGCAGCAGGAGCCTGGGAGCCCAAAAGCAAAGGCCCCACAGAAGAGTCAGAAGATGCTGGGCTGTGCGGACAAGGGCGAGGCCCACAGGAGGCCCAGAACAGGGGAGCAGGGACACAGGTCCAAGGGACCCAGGACCTCTGAAGCCAGTGGGAGGAGCCACCCTGCCCAAGCCAGGGAAATAGGAGACAAACAAGAAAGGAAATACAACCAGCTTCAGCTGGAGAAGGGACAGACACCACCAGAAAGCCACTTCCAGAGAAAGATCAGTCACCATCCACAGG
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           53220 594 -    142253 CCTCAGTGTCTACAATCTGTGTTGCTCAGGATCCAGGGCAGCTGTGCCTGAAAGCACAGGTGGTCAGTGAGATTGCGCTCATAGTGCAGGTGGACTCAGAGGAGCAGCTGCCAGGCCGTGTTTCCAGCATCCTCCTCCAGGAGGGCGCCACAGGCCTGTGCCTTCCAGGCCGCCATGTGGACATGCTCCCAGCCACATACAGGCCACCCACTTAGGCCCCTCTGTCCACCTCCCAGAGTGTGCTCAGTAGGAGGAACACGACAGCTTCCCAGGGGCCATGTGCCCTCCTATGGAAGGGAGGGGACAGACTGGGGCAGCAGGAGCCTGGGAGCCCAAAAGCGAAGGCCCCACAGAAGAGTCAGAAGATGCTGGGCTCTTTGGACAAGGGCAAGGCCCACAGGAGGCCCAGACCAGGGGAGCAGGGACACAGGTCCAAAGGACCCAGGACCTCCCAAGCCAGTGGGAGGAGCCACCCTGCCCACGCGAGGGAAATAGGAGACAAACAAGAAAGGAAATACAATCAGCCTCAGCCAGAGAAGGGACAGGCACCACCAGAAAGCAACTTCCAGAGAAAGATCAGTCACCGTCCACAGG
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75916687 593 + 121039945 CCTCAGTGTCTACAATCTGTGTTGCTCAGGATCCAGGGCAGCTGTGCCTGAAAGCGCAGGTGGTCAGTGAGATTGCGCTCATAGTGCAGGTGGACTCAGAGGAGCAGCTGCCAGGCCGTGTTTCCAGCATCCTCCTCCAGGAGGGCGCCACAGGCCTGTGCCTTCCAGGCCGCCACATGGACATGCTCCCAGCCACATACA-GCCACCCACTTAGGCCCCTCTGTTCACCACCCAGAGTGTGTTCAGTAGGAGGAACACAGCAGCTTCCCAGGGACCATGTGCCCTCCTATGGAAGGGAGGGGACAGACTGGGGCAGCAAGAGCCTGGGAGCCCAAAAGTGAAGGCCCCACAGAAGAGTCAGAAGACACTGGGCTCTTTGGACAAGGGCGAGGCCCGCAGGAGGCCCAgaccaggggagcagggacacaggtccaagggaccgaggaccTCCGAAGCCAGTGGGAGAAACCACCCTGCCCATACCAGGGAAACAGGAGACAAACAAGACAGGAAATACAATCAGCCTCAGCCAGAGAAGGGACAGGCACCACCAGAAAGCAACTTCCAGAGAGAGATCAGTCACCGTCCACAGG
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     53358 594 -     93100 CCTCAGTGTCTACAATCTGTGTTGCTCAGGATCCAGGGCATCTGTGTCTGAAAGCACAGGCAGTCAATGAGATTGCGCTCACAGTGCAGGTGGACTCAGAGGAGCAGGTGCCAGGCCGTGTCTCCAGCATCCTCCTCCAGGAGGGCCCCACAGACCTGTGCCTTCCAGGCCACAAAGTGGACATGCTCCCAGCCATAGACTGGCCACTCACTAATGCCCCACTGTCCACCTCCCAGACTGTGCTCAGTAGGAGGAACATGGCAGCTTTCCAGGGGCCATGTGCCCTCCTGTGGAAGGGAGGGGACAGACTGGGGCAGCAGGAGCCTGTGAGCCCAAAAGTGAAGGCCCCACAGAAGAGTCAGAAGATGCTGGGCTCTGTGAACAAGGGCGAGGCCTGCCGGAGGCCCAGACCAGGGTAGCAGGGACATAGGTGCAAGGGACCCAGGACCTCCGAAGCCAGTTGGAGGAGCCACCCTGCCCATGCCAGGGAAATAGGAGACAAACAATAAAGGAAATATGACAAGCCTCAGCTAGAGAAGGGACAGGCACCACCAGAGTGCAACTTCTGGAGAAAGATCAATCACCATTCACAGG
i rheMac8.chrUn_NW_014998353v1 I 33 I 1090
s cerAty1.NW_012000030v1         1930061 591 +   8072957 CCTCAGGGTCTACAATCTGTGTTGCTCAGGATCCAGAGCAGCTGCGCCTGAAAGCGCAGGTGGTCAATGAGATTGCGCTCCTAGTTCAGGTGGATTCAGTGGAGCAGCCGCCAGGCCGTGCCTCAGGCGTCCTCCTCCAGGATGGCGCCATAGATTTGTGCCTTCCAGGCCGCCACGTGGACATGCTCCCTGCCACAGACAGGCTGCCCGCTCAGGCCCCTCTGTCCACCCCCCAGAGTGTGTCCAGT---AAGAACACGACAGTTTCCCAGGGGCCATGGGCCCTCCTATGGAAGGGAGGGGACAGCCCAGGGCAGCGGGAGCCTGGGAGCCCAAAAGCAAACGCCGCACAGAAGAGTCAGAAGTCGCTGGGCTCTGCGGACAAGGGCGAGGCCCGCAGGAGACTCAGACCAGGGGAGCAGGGACACGGCTCCAAGGGACTTAGGACCTCTGAAGCCAGTGGGAGGAGCCACTCTGCTCACACCAGGGAAATAGGAGACAAACAAGAAAGGAAATACAACCAGCCTCAGCCGGAGAAAGGAGAGACGCCACCAGAAAGCCACTTCCGGAGAAAGATTGGTCACCATCCACGGG
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012105664v1         1291536 568 -   1339302 CCTCAGGGTCTACAATCTGTGTTGCTCAGGATCCAGAGCAGCTGCGCCTGAAAGCGCAGGTGGTCAATGAGATTGCACTCCTAGTTCAGGTGGATTCAGTGGAGCAGCCGCCAGGCCGTGCCTCGGGCGTCCTCCTCCAGGATGGCGCCATAGATTTGTGCCTTCCAGGCCGCCACGTGGACATGCTCCCCAATGCAGACAGGCTGCCCGTTCAGGCCCCTCTGTCCACCTCCCAGAGTGTGTCCAAT---AAGAACACGACGGCTTCTCAGGTGCCATGGGCCCTCCTATGGAAAGGAGGGGACAGCCCAGGGCAGCGGGAGCCTGGGAACCCGAAAGCAAAGGCCCCACAGAAGAGTCAGAAGACGCTGGGCTCTGCGGACAAGGGCGAGGCCCGCAGG-GACCCAGACCAGGGGAGCAG----------------------GGACCTCTGAAGCCAGTGGGAGGAGCCACTCTGCTCACACCAGGGAAATAGGAGACAAACAAGAAAGGAAATACAACCAGCCTCAGCCGGAGAAAGGAGAGACGCCACCAGAAAGCCACTTCCGAAGAAAGATTGGTCACCATCCACGGG
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6787576 594 -   6934359 CCTCAGTGTCTACAATCTGTGTTGCCCAGGATCCAGGGCAGCTGTGTGTGAAAGCACAGGCGGTCAGTGAGATTGCGCTCACAGTGCAGGTGGACTCAGAGGAGCAGGTGCCTGGCCGTGTCTCCAGCATCCTCCTCCAGGAGGGCCCCACAGACCTGTGCCTTCCAGGCCACAAAGTGAATATGCTCCCAGCCATAGACAGGCCACCCACTAATGCCCCACTGTCCACCACCCAGAGTGTGTTCGGTAGGAGGAACACGACAGCTTCCCAGGGGCCATGTGCCCTCCTATGGAAGGGAGGGGACAGACTGGGGCAGCAGGAGCCTGTGAGCCCAAAAGTGAAGGCCCCACAGAAGAGTCAGAAGATGCTGGGCTCTGTGTACAAGGGCGAGGCCTGCAGGAGGCCCAGACCAGGGGAGCAGGGACATAGGTGCAAGGGACCCAGGACCTCTGAAGCCAGTTAGAGGAGCCACCCTGCCCATGCCAGGGAAATAGGAGACAAACAATAAAGGAAATATGACCAGCCTCAGCCAGAGAAGGGAGAGGCACCACCAGAGTGCAACTTCTGGAGAAAGCTCAATCACCGTTCACAGG
i colAng1.NW_012115910v1       I 28 I 1094
s calJac3.chrUn_GL286352            7554 591 -     21860 CCTCAGTGTCCACAGTCTGTGTTGCTGAGAATCCAGGACAGCTGTGCCTGAGAGTGCAGGTGGTCAGTGAGATAGAGCTCATAGTGCAGGTGGATCCAGAGGAGCAGCTGCCAGGCCGTGCCTCTGGCATCCTCCTCCAGGACGGCGCCACAAGCCTGTGCCTTCCTGGCCGCCACATGGACGTGCTCTCTGCCGCAGACATGCCACCTGCTCAGACCCCTCTGCCCACCTCCCAGTGTGTGTCCAGT---AAGAACACGACAGCTTCCCAGGGGCCATGTTACCTCCTATGGAAGGGCGGGAAAGGCCTGGGGCAGCAGGAGCCTGGGATCCCAAAAGCGAAGTCCCTGCAGAAGAGCCAGAAGGCGCTGGGCTCTGCAGACAAGGGCGAGGCCCATAGGAGGCCCAGATCAGGGGAGCCGGGACACAGGACCAAGAGACCCAGGACCTCAGAAGCCAGTGGGAGGAGCCACCCTGCCCACGCCAGGGAAATAGGAGACAAACAAGAAGGGATATACGTCCACCCTCAGCCGGAGAAGGGACAGGCACCACCACAAAGCAACTTCCGGAGACAGATCAGCCACCCTCTACAGG
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2616304 591 -   8192610 CCTCAGTGTCCACAGTCTGTGGTGCTGAGAGTCCAGAGCAGCTGTGCCTGAGAGCGCAGGTGGTCAGTGAGATCGAGCTCATAGTGCAGGTGGATCCAGAGGAGCAGCTGCCAGGCCGTGCCTCCGGCATCTTCCTCCAGGACGGCGCCACAGGCCTGTGCCTTCCTGGCCGCCATGTGGACATGCTTCCCGCCGCAGACATGCCACCTGCTCAGGCCCCTCTGTCCACCTCCCAGAATGTGTCTAGT---AAGAACACCACAGCTTCCCAGGGGCCACGTGACCTCCTATGGAGGGGAGGGAAAGGCCCGGGGCAGCAGGAGCCTGGGAGCCCAAAAGTGAAGGCCCCACAAAAGAGTCCGAAGGCGCTGGGCTCTGCAGACGACGGTAAGGCCCACAGGCGGCCCGGACCAGGGGAGCCGGGACACGGGGCCAAGAGACCCAGGACCTCAGAAGCCAGTGGGAGGAGCCACCCTGCCCACGCCAGGGAAATAGGAGACAAACAGGAAAGGAAATACGTCCACCCTCAGCCGGAGAAGGGACAGGCACCACCAGAAAGCAACTTGCAGAGGCAGATCAGCCACCCTCTGCCGG
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7149955 591 +   9895066 CCTCAGTGTCCACAGCCTGTGTTGCTGAGAATCCAGGGCAGCTGTGCCTGAGAGCGCAGGTGGTCAGTGAGATAGAGCTCATAGTGCAGGTGGATCCAGAGGAGCAGGTGCCAGGCCATGCCTCTGGCATCCTCCTCCAGGACGGAGCCACAGGCCTGTGCCTTCCTGGCCGCCACGTGTACATGCTCCCCGCCGCAGACATGCCACCTGCTCAGGCCCCTCTGTCCACCTCCCAGAGTGTGTCCAGT---AAGAACACCACAGCTTCCCAGGGGCCACGTGACCTCCTATGGAAGGGAGGGAAAGGCCCAGGGCAGCAGGAGCCTGGGAGCCCAAAAGCGAAGGCCCTGCAGAAGAGTCAGAAGGTGCTGGGCTCTGCAGACAAGGGCAAGGCCCACAGGAGGCCCAGACCAGGGGAGCCGGGACACGGGACCAAGAGACCCAGGACCTCAGAAGCCAGTGGGAGGAGCCACCCTGCCCACGCCAGGGAAATAGGAGACAAACAGGAAAGGAAATATATCCACCCTCAGCTGGAGAAGGGACAGGCACCACCAGAAAGCAACTTTCGGAGACAGATCAGCCACCCTCTGCAGG
i cebCap1.NW_016107368v1       C 0 C 0
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e chlSab2.chr12                102646004 1940 + 108555830 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=634283.000000
s hg38.chr15_KI270851v1_alt        50896 130 +    263054 GTCTACATCCCAGGAAGAGGGGCTCAGGGCAGGAAGACGTCTTGCAGAAAGGCAAGCCT-GGGCAGATGCTGTCCAGAGCTGGGGGTCTGGCCCAGCAAGGTTGTTTATGGACAGCATGGCTGATGAAGCC
s panTro5.chr9                  65533814 131 + 116767853 GTCTACACCCCAGGAAAGGAGGCACACGGTGGGAAGATGTCCTGCAGAAAGGCAAGCCTGGGGCAGATGCTTTCCAGAGCTGGGGGTCTGGCCCACCAAGGCAGTTTATGGACTGCATGGCTGACAAAGCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87034462 131 + 138149186 GTCTACACCCCAGGAAAGGAGGCACACGGTGGGAAGATGTCCTGCAGAAAGGCAAGCCTGGGGCAGATGCTTTCCAGAGCTGGGGGTCTGGCCCACCAAGGCAGTTTATGGACTGCATGGCTGACAAAGCC
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           53814 130 -    142253 GTCTACATTCCAGGAAAAGGGGCTCAGGGCAGGAAGACGTCCTGCAGAAAGGCAAGCCT-GGGCAGATGCTGTCCAGAGCTGGGGGTCTGGCCCAGCAAGGTTGTTTATGGACAGCATGGCTGATGAAGCC
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75917280 131 + 121039945 GTCTACCCCCCAGGAAAAGAGGCTCAGGGCAGGAAGACGTCCTGCAGAAAGACAAGCCTGGGGCAGATGCTGTCCAGAGCCGGGGGTCTGGCCCAGCAAGGTTGTTTATGGACAGCATGGCTGATGAAGCC
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     55042 131 -     93100 GTCTACACCCCAGGAAAAGAGGTGCAGGGCAGGAAGACGTACTTCAGAAAGGCAAGCCCAGGGCAGATGCTGTCCAGAGCTAGGAGTCTGATCCAGCAAGGTTGTTTATGGATAGCATGACTAAAGAAGCC
i rheMac8.chrUn_NW_014998353v1 I 1090 C 0
s cerAty1.NW_012000030v1         1930652 131 +   8072957 GTCTACACCCCAGGAAAACAGGCGCAGGGTGGGAAGACGTCCTGGAGAAAGGCAAGCCTGGGGCAGATGCTGTCCAGAGCTGGGGGTCTGGCCCAGCAAGGCTGTTTATGGACTGCATGGTTGATGAAGCC
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012105664v1         1292104 131 -   1339302 GTCTACACCCCAGGAAAACAGGTGCAAGGTGGGAAGACGTCCTGGAGAAAGGCAAGCCTGGGGCAGATGCTGTCCAGAGCTGGGGGTCTGGCCCAGCAAGGCTGTTTATGGACTGCATGGTTGATGAAGCC
i manLeu1.NW_012105664v1       C 0 M 630
s colAng1.NW_012115910v1         6789264 131 -   6934359 GTCTACACCCCAGGAAAAGAGGTGCAGGGCAGGAAGACATACTTCAGAAAGGCAAGCCTGGGGCAGATGCGGTCCAGAGCTAGAAGTCTGATCCATCAAGGTTGTTTATGGACAGCATGACTAATGAAGCG
i colAng1.NW_012115910v1       I 1094 I 5
s calJac3.chrUn_GL286352            8145 131 -     21860 GTCTACCCCCCAGGAAAAGAGGTGCAGGGCAGGAAGATGTTCTGCAGAAAGGCAGGTCTGGGTCAGACCGTGTCCAGAGCCTCGAGTCTGGCCCAGCAAGGTTGTTCGTGGACAGCATGGCTGATGAGGCC
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2616895 131 -   8192610 GTGTACCCCCCAGGAAAAGAGGCGCAGGGCAGGAAGACGTCCTGCGGAAAGGCAGGCCTGGGGCAGCTGGTGTCCAGAGCCGAGAGTCTGGCCCAGCGAGGTATTTTATGGACAGCGTGGCTGATGAGGCC
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7150546 131 +   9895066 GTGTACCCCCCAAGAAAAGAGGCGCAGGGCAGGAAGACTTCCTGCAGAAAGGCAGGCCTGGGGCAGCTGGTGTCCAGAGCCGCGAGTCTGGCCCAGCAAGGTTGTTCATGGACAGCATGGCTGATGAGGCC
i cebCap1.NW_016107368v1       C 0 C 0
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e chlSab2.chr12                102646004 1940 + 108555830 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=1835396.000000
s hg38.chr15_KI270851v1_alt        51026 493 +    263054 CAGACCATCATCAGAGTTATGGGGCAAATCCTGGTGGACAAACTGGGGATTCAGCAGGGACGTGGTCCCTCAGAGGTCAGTCGCCACAAAGGCGACCTCCAC-GCCCAGGAGAATGTGCCTTCCTGCTGCCACAGGAGTCACTACTACCAGGAACATAGCAGAGAGATGGGG---CTGGTCTGCAGCCCCAAAGCCACCCCCAAGGGCCACAAATGTCCTGTCAAAAACAAGGGCATCAGAGACAGAGACAGCAGTTGGGCCCCCACCTCCCAGGGAGCTTGTGTCCCCAGCTGGTCCCCACCA-CCACA-GGCCATGAGTGGCAAGCACC-TCGGGCAG-CCCCATCCAC-AGCTGCAGGAACTGAGGTCTACACAGAGGTGTCTTGCCTCCTGAACCAGACCAGGCTT-CCCACACCTCTCCTGGAGGAGACAGGGGGTTCTATCCAAATAACACTGGACGCCTACACAACAAACCTGTCCTGCGTGGGTGACAACAGTCC
s panTro5.chr9                  65533945 495 + 116767853 TGGACCATCAGCAGAGTTGTGGGACAAATCCTGGTGGATAAACTGGGGCTTCAGTGGGGACGAGGTCCCTCAGAGGTCAATCGCCACAAAGGTAACTTCCAC-GCCCAGGAGAATGTGCCTTCCTGCTGCCACAGGGGTCACTGCCACCAAGAACGTAGCAGAGAGATGAGAGCTCTGGCCTGCAGCCCTAAAGCCACCCCCAAGGGCCACCACTGTCCTGTCAAAAACAGGGGCATCAGAGACAGAGACAGCAGTTGGG-CCCCACCTCCCAGGGAGCCTGTGTCCCCAGCTGGTCCCCACCA-CCACA-GGCCAAGAATGGCAAGCACC-TCGGGTGGCCCCCATCCAC-AGCTGCAGGAACTGAGGTCTGCACAGAGGTGTCTTGCCTCCTGAACTAGACCAGTCTT-CTTGCATGTCTCCTGGGGGAGACAGGGGGTTCTACTTAAATAAAACT-GATGCCTACACAATAAACCTGTCCTGCGTGGGTGATCACAGCCG
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87034593 495 + 138149186 TAGACCATCAGCAGAGTTGTGGGACAAATCCTGGTGGATAAACTGGGGCTTCAGTGGGGACGAGGTCCCTCAGAGGTCAATCGCCACAAAGGTAACTTCCAC-GCCCAAGAGAATGTGCCTTCCTGCTGCCACAGGGGTCACTGCCACCAAGAACGTAGCAGAGAGATGAGAGCTCTGGCCTGCAGCCCTAAAGCCACCCCCAAGGGCCACCACTGTCCTGTCAAAAACAGGGGCATCAGAAACAGAGACAGCAGTTGGG-CCCCACCTCCCAGGGAGCCTGTGTCCCCAGCTGGTCCCCACCA-CCACA-GGCCAAGAATGGCAAGCACC-TCGGGTGGCCCCCATCCAC-AGCTGCAGGAACTGAGGTCTGCACAGAGGTGTCTTGCCTCCTGAACTAGACCAGTCTT-CTTGCATGTCTCCTGGGGGAGACAGGGGGTTCTACTCAAATAAAACT-GATGCCTACACAATAAACCTGTCCTGCGTGGGTGATCACAGCCG
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           53944 489 -    142253 CAGACCATCATCAGAGTTATGGGGCAAATCCTGGTGGACAAACTGGGGATTCAGCAGGGACGTGGTCCCTCAGAGGTCAGTTGCCACAAAGGCAACCTCCAC-GCCCAGGAGAATGTGCCTTCCTGCTGCCACAGGAGTCACTACTACCAGGAACATAGCAGAGAGATGGGG---CTGGTCTGCAGCCCCAAAGCCACCCCCAAGGGCCACAGATGTCCTGTCAAAAACAAGGGCATCAGAGACAGAG---GCAGTTGGGCCCCCACCTCCCAGGGAGCTTGTGTCCCCAGCTGGTCCCCACCA-CCACA-GGCCATGAGTGGCAAGCACC-TCGGGCAG-CCCCATCCAC-AGCTGCAGGAACTGAGGTCTACACAGAGGTGTCTTGCCTCCTGAACCAGACCAGGCTT-CCCACACCTCTCCTGGAGGAAACA-GGGGTTCTATCCAAATAACACTGGACGCCTACACAACAAACCTGTCCTGCGTGGGTGATAACAGTCC
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75917411 499 + 121039945 CAGACCATCATCAGAGTTATGGGGCAAATCCTGGTGGACAAACTGGGGCTTCAGCAGGGACGTGGTCCCTCAGAGGTCAATCGCCACAAAGGTGACCTCCAC-GCCCAGGAGAATGTGCCTTCCTGCTGCCACAGGAGTCACTACCACCAGGAACATAGCAGAGAGATGAGAGCCCTGGTCTGCAGCCCCAAAGCCACCACCTAAGGCCACAAATGTCCTGTCAAAAACAAGGGCATCAGAGACAGAGACAGCAGTTGGGCCCCCACCTCCCAGGGAGCTTGTGTCCACAGCTGGTCCCCACCACCCACAGGGCCATGAGTGGCAAGCACCTTTGGGCAG-CTCCATCCAC-AGCTGCAGGAACTGAGGTCTACACAGAGGTGTCTTGCCTCCTGAAACAGACCAGGCTT-CCCACACCTCTCCTGGGGGAGACAGGGTGTTCTATTCAAATAACACTGGACACCTACACAACAAACCTGTCCTGCGTGGGTGATAACAGTCC
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     55173 496 -     93100 CAGGCCATCATCAGAGTTGTGGGTCAAATCCTGGTGGACAAATTGGGGCTTCAGCAGGGATGTGGTCCCTCAGAGATCAACTGCCACAAAGGCGACCTCCAA-GCCCAGAAGAATGTGCCTTCCTGCTGCCACAGGAGTCACTACCAACAGGAACACAGCAGAGAGATGAGAGCCCTGGCTTGCAGCCCCAAAGCCACCCCCAAGGGCCACAACTGTCCTGTCAAAAACAAGGGCATCAGAGACAGAGACAGCAGTTGGGCTCCCACCTCCCAGGGAGCCTGTGTCCCCAGCTGGTCCCCACCA-CCACA-GGCCACGAGAGGCAAGCACC-TCCCGTGG-CCCCATCCAC-AGCCACAGGAACTGAGGTCTACACAGATGGGTCTTGCTTCCTGAACCAGCTCAGGCTT-CTCACACCTCTCCTGGGAGAGTCAGGGGGTTCTACTCAAATAACACTGGACACCTACATAACAAACCTGTCCTGCATGGATCATCACCGTTC
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s cerAty1.NW_012000030v1         1930783 480 +   8072957 TGGACCATCAGCAGAGTTGTGGGGCAAATCCTGGTGGACAAACTGGGGCTTCCGTGGGGACGTGGTCCCTCAGACGTCAGTCGCCACAAAGGTGACCTCCAACGGCCAGAGTAATGTGCCTTCCTGCGGCCACAGGGGTCACTGCCACCAGGAACATAGCAGAGAGATGACAGCTCC-GCCTGCAG-CCCAAAGCCACCCCCAGGGGCCACCACTGTCCTGTC-AAAACAAGA--CTCAGGGACAGAGACAGCAGATGGG--CCCACCTCCC--GGAGCCTGTGTCCCCAGCTGG-CCCCACCA-CCACA-GGCCACGAGTGG---GCAAG-GCTCGGTG-CCCCATCCGCGGGCCGCAGAAACTGAGGTCTACACAG--GGGTCTTGCCTCCTGAACCAGAGAAGGCTTCCTTGCACGTCTCCTGGGGGCGAC--GGGTTTCTACTCAAATAAAACT-GACACCTACACGTTAAGCCTGTCCTGCCTGG-TGATCACAGCTG
i cerAty1.NW_012000030v1       C 0 C 0
s colAng1.NW_012115910v1         6789400 495 -   6934359 CAGGCCATCATCAGAGTTGTGGGTCAAATCCTGGTGGAC-AATTGGGGCTTCAGCAGGGACGTGGTCCCTCAGAGATCAATTGCCACAAAGGCGACCTCCAT-GCCCAGAAGCATGTGCCTTGCTGCTGCCACAAGAGTCACTACTACCAGGAACACAGCAGAGAGATGAGATCCCTGGCCTGCAGCCCCAAAGCCACCCCCAAGGGCCACAGCTGTCCTGTCAAAAACAAGGGCATCAGAGATAGAGACAGCAGTTGGGCTCCCACCTCCCAGGGAGCCTGTCTTCCCAGCTGGTCCCCACCA-CCACA-GGCCACGAGTGGCAAGCACC-TCCGGTGG-CCCCACCCAC-AGCCACAGGAACTGAGGTCTACACAGATGTGTCTTGCTTCCTGAACCAGCTCAGGCTT-CTCACACCTCTCCTGGGAGAGTCAGGGGGTTTTACTCAAATAACACTGGACACCTACATAACAAACCTGTCCTGCATGGATCATCAGAGTTC
i colAng1.NW_012115910v1       I 5 C 0
s calJac3.chrUn_GL286352            8276 471 -     21860 CGGGCTATCATCAGAGTTGTGGGACAAATCCTGGTGGGCAAACTGGGGCTTCAGCAGGGACATGGTCCCTCAAAGGTCAATTACCACAAAGGCGACCTCCAT-TCCCAGGAGAATCTGTGTTCCTGCTGCCACAGAGGTTACGGCCACCAAGAACACAGCAGAGAGATGTGTGTTCTGACCTGCAGCCCCAAAGCCACCCCCAAGGGCCATGACTGTCCTGTCAAAAGCAGGAGCA------GCAGAGACAGTAATTGGA-CCCCACATTCCAAGGAGCCTGTGTCCCCAGCTGGTCACCATCA-CCACA-CGCCATGGGTGGCAATCACC-TCGGGCAG-CCCCATCCAC-AGCCGCAGAAACTGAGGT------------------TCTGCTGAACCAGACCAGGCTT-CTCACACCTCTCCTGGGGGAGACAGTGGGTTCTACTCAAATTAAACTGGACACCTATAGAACAAACCTGTCCCGCGTGGGTGATTACAGCCC
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2617026 468 -   8192610 CGGGCCATCATCAGAGTTGTGGGACAGATCCTGCTGGACAAACTGGGGCTTCGGCAGGGACGTGGTCCCTCAGAGGTCAGTCGCCACAAAGGGGACATCCAT-TCCCAGGAGAATGTGCATTCCTGCTGCCACAGGGGTTACTGCCACCAAGAACAGAGCAGAGAGATGCACGTTCTGACCTGCAGCCCCAATGCCACCCCCAAGGGCCATGATTGTCATGTCAAAAATAGGGGCA------GCAGAGACAGCAATTGGA-CCCATTGTCCCAAGGAGCCTGTGTCCCCAGCTGGTCAC---CA-CCACA-GGCCACGGGTGGCAAGCACC-TCGGGCGG-CCCCATCCAC-AGCCGCAGGAACTGAGGT------------------CCTGCTGAACCAGACCAGGCTT-CTCACACCTCTCCTGGGGGAGACAGTGGGTTCTACTCAAATAAAACTGGACACCTACAGAACAAACCTGTCCTGCGTGGATGATTACAGCCC
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7150677 453 +   9895066 CGGGCCATCATCAGAGTTGTGGGACAAATCCTGTTGGACAAACTGGGGTTTCGGCAGGGACGTGGTCCCTCAGAGGTCAATCGCCACAAAGGTGACCTCCAT-TCCCAGGACAATGTGCATTCCTGCT---------------GCCACCAAGAACACAGCAGAGAGATGTGTGTTCTGACCTGCAGCCCCAAAGCCACCCCCAAGGGCCATGACAGTCCTGTCAAAAGCAGGAGCA------GCAGAGACAGCAATTGGA-CCCCACGTCCCAAGGAGCCTGTGTCCCCAGCTGGTCAC---CA-CCACA-GGCCACGGGTGGCAAGCACC-TCGGGCAG-CTCCATCCAC-AGCCGTAGGAACTGAGGT------------------CCTGCTGAACCAGACCAGGCTT-CTCACACCTCTCCTCGGGGAGACAGCGGGTTCTACTCAAATAAAACCGGACACCTACAGAACAAACTTGTCCTGCGTGGGTGATTATAGCCC
i cebCap1.NW_016107368v1       C 0 C 0
e manLeu1.NW_012105664v1         1292235 630 -   1339302 M
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e chlSab2.chr12                102646004 1940 + 108555830 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=1415902.000000
s hg38.chr15_KI270851v1_alt        51519 294 +    263054 CCATGTGTTCCTGACTTCCACGGAGAAGTTCCCAATATACCTGTTTTCCCTGCAGAGGTGGTGGCTTCTGTCTGTTCCATGCTAGGCTG-CAGGCAAGGGCTCAGTGTCAGCTCCTCCTGAGTGCGGCTTCCAGAATGGCTGGGCCTAGAGGAAGCTGACAGGGACCTGGAGGACCCCCTTTTCTCCCTGTCC----CCACACTGTGTCTGGTTTCCAAACTGGATCATGACCCAGAGCCTTCAGGATATGTAAGGACAGCAAACCTTACGGAGATCCCACCCGGGCTCTGGCTCACTG
s panTro5.chr9                  65534440 298 + 116767853 CCATGTGTTCATGACGTTCACGGAGAAGTTCCCAATATACCTGCTTTCCCTGCAGAGGGCGTGGCTTCTGTCTGTGCCATGCTAGGGGG-CAGGAAAGGGCACAGCATCTGCTCCTTCTGAGTGCGGCTTCCAGAATGGCTGGGCCTGGAGGAGGCTGGCAGGGACGTGGAGGACCCCCTCTTCTCCCTGTCCAGGGAGAAACCGTGTCTGGTTTCCAAACTGTATCATGACCCAGAGCCTTCAGGACGTGTAAGGACAGCAAACCCTATGGAGACCCCACCCGGGCTCTGGCTCACTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87035088 298 + 138149186 CCATGTGTTCATGACGTTCACGGAGAAGTTCCCAATATACCTGCTTTCCCTGCAGAGGGCGTGGCTTCTGTCTGTGCCATGCTAGGGGG-CAGGAAAGGGCACAGCATCTGCTCCTTCTGAGTGCGGCTTCCAGAATGGCTGGGCCTGGAGGAGGCTGGCAGGGACGTGGAGGACCCCCTCTTCTCCCTGTCCAGGGAGAAACCGTGTCTGGTTTCCAAACTGTATCATGACCCAGAGCCTTCAGGACGTGTAAGGACAGCAAACCCTATGGAGACCCCACCCGGGCTCTGGCTCACTG
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           54433 294 -    142253 CCAAGTGTTCCTGACTTCCACGGAGAAGTTCCCAATATACCTGTTTTCCCTGCAGAGGTGGTGGCTTCTGTCTGTTCCATGCTAGGGTG-CAGGCAAGGGCTCAGTGTCACCTCCTCCTGAGTGCGGCTTCCAGAATGGCTGGGCCTAGAGGAGGCTGACAGGGACCTGGAGGACCCCCTTTTCTCCCTGTCC----CCACACTGTGTCTGGTTTCCAAACTGGATCATGACCCAGAGCCTTCAGGATATGTAAGGACAGCAAACCTTATGGAGATCCCACCCGGGCTCTGGCTCACTG
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75917910 293 + 121039945 CCATGTGTTCCTGACTTCCACGGAGAAGGTCCCAATATACCTGCTTTCCCTGCAGAGGTGGTGGCTTCTGTGTGTGCCATGCTAGGGCG-CAGGAAAGGGCTCAGTGTCAGCTCCTCCTGAGTGCAGCTTCCAGAATGGCAGGCCCTAGAGGAGGTTGGCAGGGACCTGGAGGACCCCCTTTTCTTCCTGTCC----CCATACTGTGTCTGGTTTCCAAACTGGA-CATGACCCAGAGCCTTCAGGATGTGTAAGGGCAGCAAACGCAATGGAGACCCCACCCGGGCTCTGGCTCACTG
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     55669 294 -     93100 CCATGTGTTCCTGACTTCCACGGAGAAGTTCCCAATGCACCTGCTTTCCCTGCAGAGGTGGAAGCTTCTGTCTGTGCCATGCTAGGGCA-CAGGAAAGGGCTCAGTGTCAGCTCCTCCTGAGCGTGGCTCCCAGAATGACTGGGCCAGGAGGAGGCTGACAGGGACCTGGAAGACCCCATGTTCTCCCTGTCC----CCACACTGTGTCTGGTTTCCAAACTGGATCATGACTCAGAGCCTTCAGGACGTGTAAGGTTAGCAAACCCTTTGGAGATTCCACCTGGGCTCTGGCTCACTG
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s cerAty1.NW_012000030v1         1931263 296 +   8072957 CCATGTGTTCCCGACTTTCACAGAGAAGTTCCCAATACA-CTGGTTTCCCTGCAGAGGTGGTGGCTTCTGTCTGTGCCATGCTAGGGCACCAGGAAAGGGCTCAGCGTCCGCTCCTTCTGAGTGCGGCTTCCAGAATGGCTGTACCTGGAGGAGGCTGGCAGGGACATGGAGAACCCCCTCTTCTCCCTGTCCAGGGAGAAACCGTGTCTGGTTTCCAAGCTGGATCATGACCCAGAGTCTTCAGGACGTGTAAGGACAGCAAATCCTATGGCGACCCCACCGGG--TCTGGCTCACTG
i cerAty1.NW_012000030v1       C 0 I 1221
s manLeu1.NW_012105664v1         1292879 296 -   1339302 CCATGTGTTCCCGACTTTCACAGAGAAGTTCCCAATACACTTGGTTTCCCTGCAGAGGTGGTGGCTTCTGTCTGTGCCATGCTAGGGCA-CAGGAAAGGGCTCAGCGTCCGCTCCTTCTGAGTGCGGCTTCCAGAACGGCTGTACCTGGAGGAGGCTGGCAGGGACGTGGAGGACCCCCTCTTCTCCCTGTCCAGGGAGAAACCGTGTCTGGTTTCCAAGCTGGATCATGACCCAGAGTCTTCAGGACGTGTAAGGACAGCAAACCCTATGGAGACCCCACCGGG--TCTGGCTCACTG
i manLeu1.NW_012105664v1       M 630 C 0
s colAng1.NW_012115910v1         6789895 294 -   6934359 CCATGTGTTCCTGTCTTCCACGGAGAAGTTTCCAATGTACCTGCTTTCCCTGCAGAGGTGGTAGCCTCTGTCTGTGCCATGCTAGGGCA-CAGGAAAGGGCTCAGTGTCAGCTCCTCCTGAGTGTGGCTCCCAGAATGACTGGGCCAGGAGGAGGCTGACAGGGACCTGGAAGACCCCATGTTCTCCCTGTCC----CCACACTGTGTCTGATTTCCAAACTGGATCATGACTCAGAGCCTTCAGGACGTGTGATGATAGCAAACCCTTTGGAGATTCCACCCGGGCTCTGGCTCACTG
i colAng1.NW_012115910v1       C 0 C 0
s calJac3.chrUn_GL286352            8747 276 -     21860 CCACGTGTTCATGACTTTCGCGGAGAGGTTCCCAACACACCTGCTTTCCCTGCAGAGGTGGTGGCTTCTGT----------CTAGGGTA-CAGGAAAGGGCTCAGCATCCACTCCTTCTGAGAATGAGTTCCAGAAGGGCTGGGCCTGGAGGAGGCTGACAGGTACATGAGGGACCCCCTCTTCTCCCTGTCC----CCACAGTGTGTCTGTTTTCCAAACTGGATCATGACCCAGAGCCTTTG--------AAGGACAGCAAACCCTATAGAGACCCCGCCTGGGCTCCAGCTGACTG
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2617494 286 -   8192610 CCATGTGTTCATGACTTCCATGGAGAGGTTCCCAATACACCTGCTTTCCCTGCAGAGGTGGTGGCTTCTGTCTGTGCCACACTAGGGTA-CAGGAAAGGGCTCAGCGTCCGCTCCTCCTGAGCGTGACTTCCAGAAGGGCTGGGTCTGGAGGAGGCTGACAGGGACATGAAGGACCCCCTCTTCTCCCTGTCC----CCACACTATGTCTGGTTTCCAAACTGGATCATGACCCAGAGCCTTTG--------AAAGATAGCAAACCCTATGGAGACCCCGCCTGGGCTCTGGCTGACTG
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7151130 286 +   9895066 CCATGTGTTCATGACTTCCACGGAGAGGTTCCCAATACACCTGCTTTCCCTGCAGAGGTGTTGGCTTCTGCATATGCCATGCTAGGGTA-CAGGAAAGGGCTCCGCGTCCACTCCTCCTGAGGGCGACTTCCAGAAGGGCTGGGCCTGGAGGAGGCTGACAGGGACATGAAGGACCCCCTCTTCTCCCTGTCC----CCCAACTTTGTCTGGTTTCCAAACTGCATCATGACCCAGAGCCTTTG--------AAGGACAGTAAACCCTATGGAGACCCCGCCTGGGCTCCGGCTGACTG
i cebCap1.NW_016107368v1       C 0 C 0
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e chlSab2.chr12                102646004 1940 + 108555830 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=7155.000000
s hg38.chr15_KI270851v1_alt        51813 2 +    263054 CA
s panTro5.chr9                  65534738 2 + 116767853 CA
i panTro5.chr9                 C 0 I 12
s panPan2.chr9                  87035386 2 + 138149186 CA
i panPan2.chr9                 C 0 I 12
s gorGor5.CYUI01000350v1           54727 2 -    142253 CA
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75918203 2 + 121039945 CA
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     55963 2 -     93100 CA
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s manLeu1.NW_012105664v1         1293175 1 -   1339302 -C
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6790189 2 -   6934359 CA
i colAng1.NW_012115910v1       C 0 C 0
s calJac3.chrUn_GL286352            9023 2 -     21860 CA
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2617780 2 -   8192610 CA
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7151416 2 +   9895066 CA
i cebCap1.NW_016107368v1       C 0 C 0
e cerAty1.NW_012000030v1         1931559 1221 +   8072957 I
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e chlSab2.chr12                102646004 1940 + 108555830 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=19988.000000
s hg38.chr15_KI270851v1_alt        51815 9 +    263054 TTCCCTGTT
s gorGor5.CYUI01000350v1           54729 9 -    142253 TTCCCTGTT
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75918205 9 + 121039945 TTCCCTGTT
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     55965 9 -     93100 ACCCCCATT
i rheMac8.chrUn_NW_014998353v1 C 0 I 4
s manLeu1.NW_012105664v1         1293176 9 -   1339302 ATCCCCGTT
i manLeu1.NW_012105664v1       C 0 I 4
s colAng1.NW_012115910v1         6790191 9 -   6934359 ACCCCCATT
i colAng1.NW_012115910v1       C 0 I 4
s calJac3.chrUn_GL286352            9025 9 -     21860 TCCCCCATT
i calJac3.chrUn_GL286352       C 0 I 4
s saiBol1.JH378203               2617782 9 -   8192610 TTCCCCATT
i saiBol1.JH378203             C 0 I 4
s cebCap1.NW_016107368v1         7151418 9 +   9895066 TTCCCCATT
i cebCap1.NW_016107368v1       C 0 I 4
e panPan2.chr9                  87035388 12 + 138149186 I
e panTro5.chr9                  65534740 12 + 116767853 I
e cerAty1.NW_012000030v1         1931559 1221 +   8072957 I
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e chlSab2.chr12                102646004 1940 + 108555830 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=3779367.000000
s hg38.chr15_KI270851v1_alt        51824 957 +    263054 CTAAGGCGACTTCTGTGCTGCTGTAGGGGATGGGTCTACAGGGGCGTCACGGACTG-GGGGGTGGTAGGCTCCCCTCAGGCTGGAGGAGTGATGGATCCCAGCAGCCTCCCTGCCTCACAGTAGCCTGGGAATGTAGGGGGTGTCTTGTGCTGGCCCTGGGTCAGAGGGGGGACTGCTCTTTCTGGGATCTCCTGGTGGGGAAGAGATGACACCCTCCCCAGACCCTTTCCTGACTGCTGAGTTCCGGATCTGGGATGGACCTGGGCCCCTCCAGCACTTGGCTCAGGCTTGATAACACCCCTGGGTTCATGTCTGGTGTCCCCTGCCTCACTCTCCAGGGC-------------AGTCTCCCAGCCCACT----AGTGTGGGGTGTCTGTTTCAGGAGGCACCTAGGGCTGCTGCCTGCCCCTCTGGCAGGACTCTGTGGTCAGGAATCACAGGAGGAGACCTTGGGGCCCAGGGTGAGAGGTGG-GAGAAGAATCAGGGAAGACGAGCATAAGTTTGCAAGTGCAGGATCCACAAGCTGCCCACAGCTGTAACCAGGGTCCTTGCAGTCTGGTGACCATTACAAGCAAAAGTGGTCAGTGCCACTGCCAGGGGAGGGGGACCCAGAAGGCAAGGGCTGGCCTGGGTTACAAAGCACATCTATGGTTCCAGGCCCAGGTGCTGGCAAGGGACACATTGGGGCTCAGAGAATCTGGTCACATGGTTGGCAGGGACAGTCCCCACAGGGCCCAGTCCTGCACTCCCTTCGTCCTGGTACTGGGTCCTTCCTGGCCATCCCCAGGGAAGGCAGGAGCAAGGGCAGGGCAGGCAGGAGCCAGTTCCTCAGAGGGCTCTGCCCAGGGGCCTTCTGCCCAGGGAGAGCTCTGCACCTGCAGGGGCTGCGGAGGCTGAGGACAAGGTGTCAGGTCTGTACCCAGGCCTGGCGGGA-----------------------CCCACACCGGGGACCTGTTTCGAACAC
s panTro5.chr9                  65534752 940 + 116767853 CTAAGGTAACTTCTGTGCTGCTGTAGGAGCTGGGTCTGCAAGGGCCTTATGGACTGAGAGGGTGGCAGGCTCCCCTCAGGCTGGAGGAGTGATGGATCCCAGCAGCCTCCCTGCCCCGTGGTAGCCTGGGAATGT-GGGGGTGTCCTGTACTGGCCCTGGGTGAGATAAGGGAcagctccttctcagatgtcctggtggggaagaaatgacaccctccccagacccctccctacctgctgagt------tctgggatGGACCTGGGCCCCGCCAGCACTTGGTTCAGCCTTGATAACACCCCTGGGTTTGCATCTGGTGTCCCCTGCCTCACTCTCCAGAGC-------------AGTCTCCCAGCCCACT----AGTGTGGGGTGGCTGTTTCAGGAGGCACCCAGGGCTGCTGCCTGCCCCTCTGGTGGGACTCTGTGGTTAGGAACCGCAGGAGGAGACCTT-AGGCCCAGGGTGAGAGGTGGTGAGAAGAATCAGGGAAGACGAACATAAGTTCGCAAGTGCAGGACCCACAAGCTGCCCACAGCTGTAACCAGGGTCCTCATAGTTTGGTGACCATTACAAGCAAAGGTGGTCAGTGCCACTCCCAGGGGAGAGGGACCCAGAAGGCAAGGGCTGGCCT-GGTTACACAGCACATCTATGGCTCCAAGCCCAGGTGCTGGCAGGGGACACATTGGGGCTCAGAGGATCTGGTCACATGGTTGGCAGGGACAGTCCCCGCAGGGCACAGTCCTGGGCT-CCTCCGTCCTGGTGCTGGGTCCCTCCTGTCCATCCCCAAGGAAGGCAGGAGCAA---------ATGCAGGAGCTGGTTCCCCAGAGGGCTCTGCCCAGGGGCCTTCTGCCCAGGGAGAGCTCTGCACCTGCAGGGGCTGTGGAGGCTGAGGACAAGGGGATAGGCCTGTACCCAGGCGTGGCGGGA-----------------------CCCATGCTGGGGACCTGTTTGGAAAAG
i panTro5.chr9                 I 12 C 0
s panPan2.chr9                  87035400 940 + 138149186 CTAAGGTAACTTCTGTGCTGCTGTAGGAGCTGGGTCTGCAAGGGCCTTATGGACTGAGAGGGTGGCAGGCTCCCCTCAGGCTGGAGGAGTGATGGATCCCAGCAGCCTCCCTGCCCCGTGGTAGCCTGGGAATGT-GGGGGTGTCCTGTACTGGCCCTGGGTGAGACAAGGGAcagctccttctcagatgtcctggtggggaagaaatgacaccctccccagacccctccctacctgctgagt------tctgggatGGACCTGGGCCCCGCCAGCACTTGGTTCAGCCTTGATAACACCCCTGGGTTTGCGTCTGGTGTCCCCTGCCTCACTCTCCAGAGC-------------AGTCTCCCAGCCCACT----AGTGTGGGGTGTCTGTTTCAGGAGGCACCCAGGGCTGCTGCCTGCCCCTCTGGTGGGACTCTGTGGTTAGGAACCGCAGGAGGAGACCTT-AGGCCCAGGGTGAGAGGTGGTGAGAAGAATCAGGGAAGACGAACATAAGTTCGCAAGTGCAGGACCCACAAGCTGCCCACAGCTGTAACCAGGGTCCTCATAGTTTGGTGACCATTACAAGCAAAGGTGGTCAGTGCCACTCCCAGGGGAGAGGGACCCAGAAGGCAAGGGCTGGCCT-GGTTACACAGCACATCTATGGCTCCAAGCCCAGGTGCTGGCAGGGGACACACTGGGGCTCAGAGGATCTGGTCATATGGTTGGCAGGGACAGTCCCCGCAGGGCACAGTCCTGGGCT-CCTCCGTCCTGGTGCTGGGTCCCTCCTGTCCATCCCCAAGGAAGGCAGGAGCAA---------ATGCAGGAGCTGGTTCCCCAGAGGGCTCTGCCCAGGGGCCTTCTGCCCAGGGAGAGCTCTGCACCTGCAGGGGCTGTGGAGGCTGAGGACAAGGGGATAGGCCTGTACCCAGGCGTGGCGGGA-----------------------CCCATGCTGGGGACCTGTTTGGAAAAG
i panPan2.chr9                 I 12 C 0
s gorGor5.CYUI01000350v1           54738 949 -    142253 CTAAGGTGACTTCTGTGCTGCTGTAGGGGCTGGGTCTACAGGGGCGTCAC-GACT--GGGGGTGGTAGGCTCCCCTCAGGCTGGAGGAGTGATGGATCCCAGTAGCCTCCCTGCCTCACAGTAGCCTGGGAATGTGGGGGGTGTCTTGTGCTGGCCCTGGGTCAAAGCGGGGACTGCTCTTTCTGGGATCTCCTGGTGGGGAAGAGATGACACCCTCCCCAGACCCTTTCCTGACTGCTGAGTTCTGGGTCTGGGGTGGACCTGGGCCCCTCCAGCACTTGGCTCAGCCTTGATAACACCCCTGGGTTCATGTCTGGTGTCCCCTGCCTCACTCTCCAGAGC-------------AGTCTCCCAGCCCACT----AGTGTGGGGTGTCTGTTTCAGGAGGCACCTAGGGCTGCTGCCTGCCCCTCTGGCAGGACTCTGTGGTCAGGAATCACAGGA-GAGACCTTAGGGCCCAGGGTGAGAAGTGG-GAGAAGAATCAGGGAAGACGAGCATAAGTTTGCAAGTGCAGGATCCACAAGCTGCCCACAGCTGTAACCAGGGTCCTC-CAGTCTGGTGACCATTACAAGCAAAAGTGGTCAGTGCCACTGCCAGGGGAG-GGGACCCAGAAGGCAAGGGCTGGCCTGGGTTACAAAGCACATCTATGGTTCCAGGCCCAGGTGCTGGCAAGGGACACATTGGGGCTCAGAGAATCTGG-CACATGGTTGGCAGGGACAGTCCCCACAGGGCCCAGTCCTGCACTCCCTTCGTCCTGGTACTGGGTCCTTCCTGGCCATCCCCagggaaggcaggagcaa-ggcagggcaggcaggagccagTTCCTCAGAGGGCTCTGCCCAGGGGCGTTCTGCCCAGGGAGAGCTCTGCACCTGCAGGGGCTGTGGAGGCTGAGGACAAGGTGTCAGGTCTGTACCCAGGCCT-GCGGGA-----------------------CCCACACTGGGGACCTGTTTCGAACAT
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75918214 955 + 121039945 CTACGGTGACTTCTGTGCTGCTGTAGG-GCTGGGTCTGCAGGGGCCTCACGGACTG-GGGGGTGGTAGGCTCCCCTCAGGCTGGAGGAGTGACTGATCCCAGCAGCCTCCCTGCCTCACAGTAGCCTGGGAATGTGGGGGGTGTCCTGTGCTGGCCCTGGGTCAGAGGGGAGACTGCTCTTTCTGGGATCTCCTGGTGGGGAAGAGATGACACCCTCCCCAGACCCTTTCCTGCCTGCTGAGTTCTGGGTCTGGGATGGACCTGGGCCCCACCAGCACTTGGCTCAGCCTTGATAACACCCCTGGGTTCATGTCTGGTGTCCCCTGCCTCACTCTCCAGAGC-------------AGTCTCCCAGCCCACT----AGTGTGGCGTGTCTGTTTCAGGAGGTATCCAGGGCTGCTGCCTGCCCCTCTGGCGGGAATCTGTGGTCAGGAATCACAGGAGGAGACCTCAGGGCCCAGGGTGAGAGGTGG-GAGAAGAATCAGGGAAGGTGAGCATAAGTTTGCAAGTGCAGGATCCACAGGCTGCCCACAGCTGCAACCAGGGTCCTCGCAGTCTGGTGACCATTACAAGCAAAAGTGATCAGTGCCATTGCCAGGGGAGTGGGACCCAGAAGGCAAGGGCTGACCTGGGTTACAAAGCA-ATCTATGGTTCCAGGCCCAGGTGCTGGCAAGGGACACATTGGGGCTCAAAGAATCTGGTCACATGGCTGGCAGGGACAGTCCCCACAGGGCCCAGTCCTGCGCTCCCTTCGTCCTGGTCCTGGGTCCTTCCTGGCCATCCCCAGGGAAGGCAAGACCAAGGGCAGGGCAGGCAGGAGCCAGTTCCTCAGAGGGCTCTGCCCAGGGGCCTACTGCCCAGGGAGAGCTCTGCACCTGCAGGGGCTGTGGAGGCTGAAGACAAGGCGTCAGGTCTGTACCCAAGCCTGGCGGGA-----------------------CCCACACTGGGGACCTGTTTCGAACAT
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     55978 939 -     93100 CTAAGGTGACTTCTGTGCTGCTGTAGGAGCTGGGTCTGCAGGGGCCTCACGGACTGAGGGGGTGGTAGGCTCC-----------AGGAGTGATGAATCCCAGAAACCCCCCTGCCCCACAGTAGTCTGGGAATGT-GGGGGTGTCCTGTGCTGGCCCTGGGTCAGAGGCAGGACTGCTCTTTCCAGGATCTCCTGGTGGGGAAGAGATGACACCCTCCCCAGACACTTTCCTGTCTGCTGAGT------TCCGGGATGGACTTGGGCCCTGCCAACACTTGGTTCAGCCTTGATAACACCCTTGGGTTCATGTCTGCCATCCCCGGCCTCACTCCCCAGAGA-------------AGTCTCCCAGCCCACT----AGTGTGGGGTGTCCGTTTCAGGAGGCACCCAGGGCTGCTGCCTGCCCCTCTGGTAGGACTCTGTGGTCAGGAACCACAGGAGAGGACCTT-AGGTTCAGGGTGGGAGGTGG-GAAAAGAATCAGGGAAGATGAGCCTAAGATTGCAAGTGCAGGATCCAAAAGCTGCCTGCAGCTGTAACCAGGGTCCTCGCAGTCTGGTGACCATTACAAGCAAAAGTGGTCAGTGCCACTCCCGGGGGAGGGGAACCCAGAAGGCAAGGGTTGGCCTGGGTCACACAGCACATCTATGGTTCCAGGCCCATGTGCTTGCAGGGGACACATTGGGGCTCAGAGAATCTGGTCACATGGTTGGCAAGGACAGTCCCCACATGGCCCAGTCCTGTGCTTCCTCCGTCCTGGTGCTGGGTCCTTCCTGGCCATCCCCAGGGAAGGCAGGAGCAAGGTCAGGGCAGGCAGGAGCCAATTCCTCATAGGAATCTGCCCAGGGGCCTTCTGCCCCAGGGGACCTCTGCACTTGCAGGGGTTGTGGAGGCTGAGGACAAGGGGACTGGCCTGTACCCAGGCCTGGTAGGA-----------------------CCCAAGTTGGGGACCTGTTTTGAACAT
i rheMac8.chrUn_NW_014998353v1 I 4 C 0
s manLeu1.NW_012105664v1         1293189 923 -   1339302 CTAAGGTAACTTCTGTACTGCTGCAGGGGCTGGGTCTGCAGGGGCCTCACGCCCTGAGGGGCTGGTAGGCTCCCCTGAGGCTGGAGGAGTGATGGATCCCAGCAGTCTCCCTGCCCCGTGGTAGCCTGGGAATGT-GGGGGTGTCCTGTACTGGCCCTGGGTCAGAGGCGGGACAGCTCCTTTCCAGATGTCCTGGTGGGGAAGAGCTGACACCCTCCCCAGATCCTTCCCTGCCTGCTGAGT------TCCGGGACGGACCTGGGCCCCGCCAGCACTTGGCTCAGCCTTGATAACACCGCTGGGTTTGCGTCTGGTGTCCCCTGCCTCACTCTCCAGAGC-------------AGTCTCCCGG-CCACT----AGTGTGGGGTGTCTGTTTCAGGAGGCACCCAGGGCTGCTGCCCGGCCCCCTGGCGGGACTCTGCGGTCAGGAACCACAGGAGGGGACC-T-AGACCCAGGGTGGGAGGTGG-GAGAAGAATCCGGGAAGACGAACATAAGTTCGCAAGTGCAGGATCCACAAGCTGCCCACAGCTGTAACCAGGGTCCTCACAGTCCGGTGATCATTACAAGTAAAAGTGGTCAATGCCACTCCCAGAGCAGAGGGATCCAGAAGGCAAGGGCTGGCCTGGGTGACACAGCACATCTATGGCTCCAAGCCCAGCTGCTGGCAGGGGACACACTGGGCCTCAGAGGATCTGGTCACATGGTTCACAGGGAGAGTCCCCACAGGGCACGGTCCTGGGC-TCCTCCATCCTGGTGCTGGGTCCCTCCTGGCCATCCCCAGGGAAGGCAGGAGCAA---------AGGCAGGAGCTGGTTCCCCAGAGGGCTCTGCCCAGGG------------AGAGG---TCTGCACATGCAGGGGTTGTGGAGGCTGAGGACAAGGGGACAGGCCTGTACCCAGGCGTGGCGGGA-----------------------CCCATGCTGGAGACCTGTTTGGAAAAG
i manLeu1.NW_012105664v1       I 4 C 0
s colAng1.NW_012115910v1         6790204 939 -   6934359 CTAAGGTGACTTCTGTGCTGCTGTAGGAACTGGGTCTGCAGGGGCCTCACGGACTGAGGGGGTGGTAGGCTCC-----------AGGAGTGATGGATCCCAGAAACCTCCCTGCCCCACAGTAGTCTGGGAAAGT-GGAGGTGTCCTGTGCTGGCCCTGGGTCAGAGGCAGGACTGCTCTTTCCAGGATCTCCTGGTGGGGAAGAGATGACACCCTCCCCAGACACTTTCCTGCATGCTGAGT------TCTGGGATGGACTTGGGCCCTGCCAACACTTGGTTCAACCTTGATAACACCCCTGGGTTCATGTCTGCCATCCCCGGCCTCACTCCCCAGAGC-------------AGTCTCCCAGCCCACT----AGTGTGGGGTGTCCATTTCAGGAGGCACCCAGGGCTGCTGCCTGCCCCTCTGGTAGGAGTCTGTGGTCAGGAACCATAGGAGAGGACCTT-AGGTTCAGGGTGGGAGGTGG-GAAAAGAATCAGGGAAGACGAGCCTAAGATTGCAAGTGCAGGATCCAAAAGCTGCCTGCAGCTGTAACCAGGGTCCTCACAGTCTGGTGACCATTACAAGCAAAAGTGGTCAGTGCCACTCCCGGGGGAGGGGAACCCAGAAGGCAAGGGTTGGCCTGGGTCACACAGCACATCTATGGTTCCAGGCCCATGTGCTTGCAGGGGACACATTGGGGCTCAGAGAATCTGGTCACATGGTTGGCAGGGACAGTCCCCACATGGCCCAGTCCTGTGCTCCCTCCGTCCTGGTGCTGGGTCCTTCCTGGCCATCCCCAGGGAAGGCAGGAGCAAGGGCAGGGCAGGCAGGAGCCAATTCCTCAGAGGGATCTGCCCAGGGGCCTTCTGCCCCAGGAGACCGCTGCACCTGCAGGGGTTGTGGAGGTTGAGGACAAGGGGACAATCCTGTACCCAGGCCTGGTAGGA-----------------------CCCAAGTTGGGGACCTGTTTTGAACAT
i colAng1.NW_012115910v1       I 4 C 0
s calJac3.chrUn_GL286352            9038 975 -     21860 CTAAGGTGACTTCTGAGCTGCTGTAGGGGCTGGGTCTGTAGAGGCCTCACGGACTGAGGGGGTGGTGGGCT-CCCTCAGGCTGGAGAAGTGATGGG---CAGCAGCCTCCCTGACCCGTGGTAGCCTGGGAATGT-GGGGGTGTCCTGTATTGGTCCTGGGTCAGAGGCGGGACAGCTCCTTCCCCGATCTCCTGGTGGGGAAGAGATGACATCTTCCCTAGGCCCTTCCCTTCTTGCT-CAT------TCCGGGATGGACTGGGGCCCCACCAGCACGTGGCTCAGCCTTGATAACACCCCTGTGTTCGCGTCTGGTGTCCC--GACTCACTCTCCAGAGAGGCCTCCAGGATAAGCCTCCCAGCCCACTAATGAGTGTGGGT-TGGCATGTCA-GGGGCACCCAGGGCTGCTGCCTGCCCCT---GCGTGACTCTGTGGTCAGGAACCACTGAAGGGGACCTT-AAGCCCAGGGTGGGAGGTGG-GAGAAGAAGCAGGGAAGATGAACATAAGTCTGCAAGTGCAGGATCCACAAGCTGCCCGCTGCTGTAACCAGGGTCCTTGCACTCTGGTGACCACTATAATCAAAAGTGGCCAGGGCCACTCCCAGGGGAGGGGGACCCCGAAGGCAAGGGCTGGCCTGGGTCACACAGCACATCTATGGCTCCAGGCCCAGGTGCTGTCAGGGAACACATGGGGCCTGAACGAATCTGGTCACATGGTTGGCA-GGACAGTCCCCACAGGGCAGGGTCCTGCACCCACTCCATCCTGGTTCT-GGTCCCTCCTGGGCATCCCCAGGGCAAGCAGGAGCAAGGGCTGGGCAGGCAGGAGCTAGTTCCCCAGAGGGCTGTACCTAGGGGCCTTCTG-CCAGGGAGCGCCTTATATCTGCAGGGATTAGGGAGGCTGAGGACAAGGGGACAGGCATGTCCCCAGGCCTGGTGGGACCCATGCAGGGGGCTTGGTGGGGCCCATGCAGGGCACCTGTTGGGAACAG
i calJac3.chrUn_GL286352       I 4 C 0
s saiBol1.JH378203               2617795 960 -   8192610 CTAAGGTGACTTCTGTGCTGCTGTAGGGACTGGGTATGCAGGGGCCTCATGGACTGAGGGGGTGGTAGGCTCCCCTCAGGCTGGAGGAGTGACGGATCCCAGCAGCCTCCCTGCCCCTTGGTAGCCTGGGAATGT-GGGGGCGTCCTGTACTGGCCCTGGGTCAGAGGCAGGACAGCTCCTTCCCTGATCTCCTGGTGGGGAAGAGATGACATCTTCCCCAGACCCTTCCCTTCCTGCT-AGT------TCTGGGATGGACCCGGGCCCCGCCAGCACGTGGCTCAACCTTGATAACACCCCTGTGTTCGCGTCTGGTGTCCC--GACTCACTCTCCAGAGCAGCCTCCAGGAGGAGCCTCCCAGCCCACTAATGAGTGTGGGGATGGCACGTCA--GGGCGCCCAGGGCTGCTGCCTGCCCCTCTGGTGGGACTCTGTGGTCAGGAACCGGCAAAGGGGACCTT-AGGCCCAGGGTGGGAGGTGG-GAGAAGAATCAGGGAAGATGAACATAAGTTTGCAAGTGCAGGATCCACAAGCTGCCTGCTGCTGTAACCAGGGTCCTCGCAGTCTGGTGATCGCTACAACCAAAAGTGGCCAGGGCCACTCCCAGGGGAGGGGGACCCCGAAGGCCAGGGCTGGCCTGGGTCACACAGCACATCTATGGCTCCAGGCCCAGGTGCTGGCAGGGGACACATGGGGCCTCAAAGCATCTGGTCACATGGTTGGCAGGGACAGTCCCCACAGGGCAGGGTCCTGCACCCCCTCTGTCTTGGTGCT-GGTCCCTCCTGGGCATCCCCAGGGCAAGCAGGAGCAAGGGCTGGGCAGGCAGGAGCCAATTCCCCAGAGGGCTGTGCCCAGGGGCCTTCTG-CCAGGGAGAGCTTTATATCTGCAGAGGTGATGGAGGCTGAGGACAAGGGGACAGGCCTGGCCCCAGGCCTGGCGGGA-----------------------CCCATGCAGGGCACCTGTTGGGAACAG
i saiBol1.JH378203             I 4 C 0
s cebCap1.NW_016107368v1         7151431 960 +   9895066 CTAAGGTGACTTCTGTGCTGCTGCAGGGGCTGGGTCTGCAGGGGCCTCACGGACTGAGGGGGTGGTAGGCTCCCCTCAGGCTGGAGGAGTGATGGATCCCAGCAGCCTCTCTGCCCCGTGGTAGCCCAGGAATGT-GGGGCTGTCCTGTACTGGCCCTGGGTCAGAGGCAGGACAGCTCCTTCCCCGATCTCCTGGTGGGGAAGAGATGGCATCTTCCCCAGACCCTTCCCTTCCTGCT-TGT------TCTGGGATGGACTGGGGCCCCACCAGCACGTGGCTCAGCCTTGATATCAACCCTGTGTTCACGTCTGGTGTCCC--GACTCACTCTCCAGAGCAGCCTCCAGGACGAGCCTCCCAGCCCACTAATGAGTGTGGGGTTGGTGTGTCA-GGGGCACCCAGGGCTGCTGCCTGCCCCTCTGGTGGGACTCTGTGGTCAGGAACCAGCAAAGGGGACCTT-AGGCCCAGGATGGGAGGTGG-GAGAAGAATCAGGGAAGATGAACATAAGTTCGCAAGTGCAGGATCCACAAGCTGCCTGCTGCTGTAACCAGGGTCCTCGCAGTCTGGTGACCGCTACAACAAAAAGTGGCCAGGGCCACTCCC-GCGGAGGGGGACCCCGAAGGCAAGGGCTGGCCTGGGTCACACAGCACATCTGTGGCTCCAGGCCCAGGTGCTGGCAGGGGACACATGGGGCCTCAGAGTATCTGGTCACAAGGTTGGCAGGGACAGTCCCCACAGGGCAGGGTCCTGCACCCCCTCTGTCCTGGTGCT-GGTCCCTCCTGGGCATCCCCAGGGCAAGCAGGAGCAAGGGCTGGGCAGGCAGGAGCCAGTTCCCCAGAGGGCTGTGCCCAGGGGCCTTCTG-CCAGGGAGAGCTTTATATCTGCAGGGGTGATGGAAGCTGAGGACAAGGGGACAGGTCTGTCCCCAGGCCTGGTGGGA-----------------------CCCATGCAGGGCACCTGTTGGGAACAG
i cebCap1.NW_016107368v1       I 4 C 0
e cerAty1.NW_012000030v1         1931559 1221 +   8072957 I
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e chlSab2.chr12                102646004 1940 + 108555830 I
e macFas5.chr15                106275291 10799 + 112612857 M

a score=758439.000000
s hg38.chr15_KI270851v1_alt        52781 137 +    263054 GCCCTGGTGTCACTTTGGGTGTCCAGGCTACTGTTGGAGCCAAGTCCTGTCTGGGGTGGTGACCTGGGCAGCTCCAGTGTGGGCCCAACATCTATGGGACCCAGGATCCTGTGACCTGCAGCAGAGGAACCCCACAG
s panTro5.chr9                  65535692 137 + 116767853 GCCCTGGTGTCACTTTGGGTGCCCAGGCTACTGCTGGAGCCAAGTCCTGTCTGGGGTGGTGACCTGGGCAGCTCCAGTGTGGGCCCAACATCTATGGGACCCAGGATCCTGGAACCCGCAGCAGAGGAGCCCCATAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87036340 137 + 138149186 GCCCTGGTGTCACTTTGGGTGCCCAGGCTACTGCTGGAGCCAAGTCCTGTCTGGGGTGGTGACCTGGGCAGCTCCAGTGTGGGCCCAACATCTATGGGACCCAGGATCCTGGAACCCACAGCAGAGGAGCCCCATAG
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           55687 137 -    142253 GCCCTGGTGTCACTTTGGGTGTCCAGGCTACTGCTGGAGCCAAGTCCTGTCTGGGGTGGTGACCTGGGCAGCTCCAGTGTGGGCCCAACATCTATGGGACCCAGGATCCTGGGACCTGCAGCAGAGGAACCCCACAG
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75919169 137 + 121039945 GCCCCGGTGTCACTTTGGGTGTCCAGGCTACTGCTGGAGCCAAGTCCTGTCTGGGGTGGTGACCTGGGCAGCTCCAGTGTAGGCCCAACGTCTACGAGACCCAGGATCCTGGGACCTGCAGCAGAGGAACCCCACAG
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     56917 137 -     93100 GCCCTGGTGTCACTTTGGGTGTCCCAACTACTGCTGGAGCCAAGTCCTGTCTGGGGTGGTGACCTGGGCAACTCCAGTGTGGGCCTAACATCTATGGGACCCAGGATCCTGGGACCTGCAGCAGAGGAACTCCACAG
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s chlSab2.chr12                102647944 137 + 108555830 GCCCTGGTATCACTTTGGGCGCCCAGGCTACTGCTGGAGCCAAGTCCTGTCTGGGGTGGTGACCTGGGCAGCTCCAGTGTGGGCCCAACATCTATGGGACCCCGGATCCTGGGACCTGCAGCAGAGGAGCCCCACAG
i chlSab2.chr12                I 1940 C 0
s manLeu1.NW_012105664v1         1294112 137 -   1339302 GCCCTGGTGTCACTCTGGGCGCCCAGGCTACTGCTGGAGCCAAGTCCTGTCTGGGGTGGTGACCTGGGCAGCTCCAGTGTGGGCCCAACATCAATGGGACCCCGGATCCTGGGACCTGCAGCAGAGGAGCCCCACAG
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6791143 137 -   6934359 GCCCTGGTGTCACTCTGGGTGTCCCAATTACTGCTGGAGCCAAGTCCTGTTTGGGGTGGTGACCTGGGCAACTCCAGTGTGGGCCTAACATCTGTGGGACCCAGGATCCTGGGACCTGCAGTAGAGGAACTCCACAG
i colAng1.NW_012115910v1       C 0 C 0
s calJac3.chrUn_GL286352           10013 137 -     21860 GCTCTGGTGTCCCTTTGGGTGCCCAGGCTACTGCTGGAGACAATTTCTGTCTGGGATGGTGACCTGGGCAGCTCCAGTGTGGGCCCAGCATCTATGGGACACAGGGTCCTGAGACCTGCAGCAGAGGAATCCCACAG
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2618755 137 -   8192610 ACTCTGGTGTCCCTTTGGGCATCCAGGCTACTGCTGGAGCCAAGTCCTGTCTGGGATGTTGACCTGGGCAGCTCCAGTGTGGGACCAACATCTGTGGGACACAGGGTCCTGAGACCTGCAGCAGAGGAACCCCACAG
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7152391 137 +   9895066 GCTCTGGTGTCCCTTTGGGCATCCAGGCTACTGCTGGAGCCAAGTCCTGCCTGGGATGGTGGCCTGGGCAGCTCCAGTGTGGGCCCAACATCTATGGGACACAGGGTCCTGAGAGCTGCAGCAGAGGAGCCCCACGG
i cebCap1.NW_016107368v1       C 0 C 0
e cerAty1.NW_012000030v1         1931559 1221 +   8072957 I
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e macFas5.chr15                106275291 10799 + 112612857 M

a score=904853.000000
s hg38.chr15_KI270851v1_alt        52918 215 +    263054 GGA-CCCCCG-GTAGACCCCAACACGCAAAGATTCCCACAAAGA-------------CCCCACATTCA-TTG-AGA-TTTCAGAGATT-CCCCACAGTGACCCCCA--GAGACCCCAACACTGA----GACC-----CCCCC-CATGAAGACCCCCCAGAGGGA-CCCCCCCACAGAAACCTCTGACAGAGACGCACACG---GAGACCCTTCAAAACCAACACAGAGATCCCCACAGAGA---------CACTCACAG
s panTro5.chr9                  65535829 224 + 116767853 AGA-CCCCCATGTACACCCCCAAACTCAAAGATTCCCACAGAGA-------------CCCCACATTCA-TAG-AGA-TTTCAGAGATT-CCCCACAGTGACCCCCA--GAGACCCCAACAGAGAATCTGACCGAGATCCCCC-CATGAAGACCCCCCAGAAGGA--CTCCCCACAGAAACCCCTGACACAGACTCACACA---GAGACCCTTCAAAACCAATACAGAGGTCCCCACGGAGA---------TTTTAGAGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87036477 224 + 138149186 AGA-CCCCCATGTACACCCCCAAACTCAAAGATTCCCACAGAGA-------------CCCCACATTCA-TAG-AGA-TTTCAGAGATT-CCCCACAGTGACCCCCA--GAGACCCCAACAGAGAATCTGACTGAGATCCCCC-CATGAAGACCCCCCAGAAGGA--CTCCCCACAGAAACCCCTGACACAGACTCACACA---GAGACCCTTCAAAACCAACACAGAGGTCCCCACGGAGA---------TTTTAGAGG
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           55824 213 -    142253 GGA-CCCCA--GTAGACCCCAACACTCAAAGATTCCCACAAAGA-------------CCCCACATTCATTTG-AGA-TTTCGGAGATT-CCCCACAGTGACCCCCA--GAGACCCCAACACTGA----GAC------CCCCC-CAAGAAGACCCCCCAGAGGGA--CCCCCCACAGAAACCTCTGACAGAGACGCACACA---GAGACCCTTCAAAACCAACACAGAGATCCCCACAGAGA---------CACTCACAG
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75919306 213 + 121039945 AGA-CCCCCG-GTAGACCCCAGCACTCAAAGATTCCCACAGAGA-------------CCCCACATTCA-TCG-AGA-TGTCAGAGATT-CCCCACAGTGACCCCCA--GAGACCCCAACACTGA----GAC------CCCCC-TATGAAGACCCCCAAGAGGGA--CCCCCCACAGAAACCTCTGACAGAGACGCACACA---GAGACCCTTCAAAACCCACACAGGGATCCCCACGGAGA---------CACTCACGG
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     57054 225 -     93100 GGA-CCCCCA-GTAGACCCCAACACTCAAAGATTCCCACAGAGA-------------CCCCACATTCA-TCA-ATA-TTTCAGAGATT-CCCCACAGTGATCCCCA--GAGACCCCAACAGAGAATCTGACTGAGATCCCCC-CACAAAGACCCCCTAGAAGGACCCTCCCCCCAGAAATCCCCGAGAGAGACTCACACA---GAGACTCTTCAAAAACAACACAGAGATCCCCACGGAGA---------CACCCACAG
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s cerAty1.NW_012000030v1         6102729 216 -   8072957 AGA-CCCCT--GTACACCCCAACACTCAAAGATT------------------------CCCACATTCA-TCAGAGA-TTCTAGAGATTCCCCCATAGTGAACCCCACCAGAACCCCAACAGAGAATCTGAC-GAGATCCCCC---ATGAGACACCCCAGAGGGA-CCTCCCCACAGACAACCCCTGACAGTCTCCACACGGACGAGCCCTTCCAAAACCTACACGGGAGACCCCACCGAGA---------CCCCCACGC
i cerAty1.NW_012000030v1       n 1221 n 1221
s chlSab2.chr12                102648081 212 + 108555830 AGACCCCCCATGTATACCCC-ACACTCAAAGATT------------------------CCCATATTCA-TAG-AGA-TTCCAGAGATT-CCCCATAGCGACCCCCA--CAGACCCCAACAGAGAATCTGACCAAGATCCCCC-CATGAAGATACCCCAGAGGGT-CCTCCCCACAGAAACCCCTGACAGA--CTCACACA---GAGGCCCTTCAAAACCAAcacggagacccccacggaga---------cccccacgg
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1294249 211 -   1339302 AGA-CCCCCATGTACACCCC-ACACTCAAAGATT------------------------CTCACATTCA-TAG-AGA-TTCCAGAGATT-CCCCATAGTGACCCCCA--CAGACCCCAACAGAGAATCTGACCGAGATCCCCC-CATGAAGACACCCCAGAGGGA-CCTCCCCACAGAAACCCCTGACAGA--CTCCCACA---GAGGCCCTTCAAAACCTACACGGAGACCCCCGCAGAGA---------CCCCCACGG
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6791280 223 -   6934359 GGA-CCCCCA-GTAGACCCCAACACTCAGAGATTCCCACAGAGA-------------CCCCACATTCA-TCA-ATA-TTTCAGAGATT-CCCCGTAGTGATCCCCA--GAGACCCCAACAGAGAATCTGACTGAGATCCCCCCCACAAAGACCCCCTAGAAGAA-CCCCCC--CAGAAATCCCCGAGAGAGACTCACACA---GAGACTCTTCAAAAGCAACACAGAGATCCCCACGGAGA---------CACCCACAG
i colAng1.NW_012115910v1       C 0 C 0
s calJac3.chrUn_GL286352           10150 242 -     21860 AGA-CCCCAT-GTAGAGCCCCACACTTGAAGATTCCCACAGAGACCCCCAAAGAGACCCCCATATTCA-CAG-AGACTTTC--AGATT-CCCCACAGTGACCCCCT--GAGTCCCTAACAGAGATTCTGACTGAGG-CCCCC-CATGAAGATCCCCCAGAGGAATCCCCCCCAGAGAAACTCCTGACAGAGACTCACACA---GAGA-CCTTCAAAACCAACATGGAGATCCCCACGGAGACCCCCCC--ACCCCACAG
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2618892 237 -   8192610 AGA-CCCCGT-GTAGAGCCCCACACTGGAAGATTCCCATAGAGAACCCCAAAGAGACTCCCACGTTCA-CAG-A---CTTC--AGATT-CCCC-----GACCCCCT--GCGGCCCTCACAGAGAATCTGACTGAGA-CCTCC-CATTAAAACCTCCCAGAGGGATCCCCCCCAGAGAAATCCCTGACAGAGACTCACACA---GAGACCCTTCAAAACCAACACAGAGATCCCCACAGAGACCTCCCCCGACCCCACAG
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7152528 237 +   9895066 AGA-CCCCGT-GTAGA-CCCCACACTCGAAGATTCCCACAGAGACGCCCAAAGAGACCCCCGCATTCA-CAG-A---CTTC--AGTTT-CCCCACAGTGACCCCCT--GAGGCCCTAACAGAGAATCTGACTGAGA-CCTCC-CATTAAAACCTCCCAGAGGGATCTCCCCC-GAGAAACCCCTGACAGAGACTCACACA---GAGACCCTTCAAAACCAACACAGAGATCCCCACAGAGAACCCCC---ACCCCACAA
i cebCap1.NW_016107368v1       C 0 C 0
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e macFas5.chr15                106275291 10799 + 112612857 M

a score=810365.000000
s hg38.chr15_KI270851v1_alt        53133 168 +    263054 TGACTCTAACAGAGACCTGcacagagaaaagatatcaaggtcactttgccacccgctaaaatccctagcactgcacttggt----gaaaatgagcagcatcttcctcattaccagcagcggctttctcctggcggccct-ctgccctcttctagat-aagattccttgagatat-
s panTro5.chr9                  65536053 166 + 116767853 TGACTCTAACAGAGACCTGCACAGAGAAAATATATCAAGGTCACTTTGCCACCCCCTAAAATCCCTAGCATTGCACTTGGT----GAAAATGAGCGGCATCTACCTCATTCCCAGCAGC-GCTTTCTCCTGGCAGCCCT-CTGCCCTCTTCTAGGT-AAGATTCCTTGAGAAA--
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87036701 166 + 138149186 TGACTCTAACAGAGACCTGCACAGAGAAAATATATCAAGGTCACTTTGCCACCCCCTAAAATCCCTAGCATTGCACTTGGT----GAAAATGAGCGGCATCTACCTCATTCCCAGCAGC-GCTTTCTCCTGGCAGCCCT-CTGCCCTCTTCTAGGT-AAGATTCCTTGAGAAA--
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           56037 168 -    142253 TGACTCTAACAGAGACCTGCACAGAGAAAAGATATCAAGGTCACTTTGCCACCCGCTGAAATCCCTAGCACTGCActtggt----gaaaatgagcagcatcttcctcattaccagcagcagctttctcctggcggccct-ctgccctcttctagat-aagattccttgagatat-
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75919519 168 + 121039945 TGACTCTAACAGAGACCTGCGCAGAGAAAAGATATCAAGGTCATTTTGCCACCCCCTAAAATCCCTGGCACTGCActtggt----gaaaatgagcggcgtctacctcatcaccagcagcggctttctcctggtggccct-cggccctcttctagat-aaaattccttgagatat-
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     57279 173 -     93100 TGAGTCTAACAGAGACCGGcacaaacaaaatatatcaaggtcactttgccacaccataaaatccctagcactgcactcacttggtgaaaatgagcggcatctacctcattaccagcagcggttttctcctgggtcgcctcctgccctcttctgggataagattccctgagata--
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s cerAty1.NW_012000030v1         1932780 168 +   8072957 TGACTCTAACAGAGACCTGCACAGAGAAAATAGATC-AGGTCACTTTGCCACCCCTCCCAATCCCAGGCACTGCACTTGGTTG--AAAAACGAGCGGCATCTACCTCATT-CCAGCAGCGCTTTCTCCCTGGCGCCCCT-CTGGCCTCTTGTAGAGGAAGATTCCGAGAGAAA--
i cerAty1.NW_012000030v1       I 1221 C 0
s chlSab2.chr12                102648293 164 + 108555830 TGACTCTAACAGAGACCTGCACAGAGAAAATATATCAAGGTCACTTTGCCACCCCCTCAAATCCCAAGCACTGCACTTGGT----GAAAACGAGCGGCATCTACCTCATT-CCAGCAGCGCCCT-CTCCTGGCCGCCCC-CTGCCCTCTTCTAGAG-CAGATTCCGAGAG-AA--
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1294460 165 -   1339302 TGACTCTAACAGAGACCTGCACAGAGAAAATAGATTAAGGTCACTTCGCCACCCCCTCAAATCCCAAGCACTGCACTTGGT----GAAAACGAGCGGCATCTACCTCATT-CCAGCAGCGCCTT-CTCCTGGCCGCCCT-CTGCCCTCTTCTAGAG-AAGATTCCGAGAGAAA--
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6791503 171 -   6934359 TGAGTCTAACAGAGAtctgcacagacaaaatatatcaaagtcactttgccaccccctaaaatccatagcactgcactcacttcgtgaaaatgggcagcatctacctcattaccagcagcggttttctcctggcggtcct-ctgccctcttctagat-aagattccttgagata--
i colAng1.NW_012115910v1       C 0 C 0
s calJac3.chrUn_GL286352           10392 170 -     21860 TGACTCTAACAGAGACCTCCA-AGAGAAAATATATCAAGGTCACTTTATCACccgctaaaataccaagcactgctctcacttgg-ttaattgagcggcatctaactcattaccagcaacagctttctcccggtggtcct-ctgccttcttctaggt-aagattccttgacaca-t
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2619129 170 -   8192610 TGACTCTAACAGAGACCTCCA-AGAGAAAATATATCCAGGTCACTTTATCACCCCCTAAAATAGCAAGCACTGCACTCACTTAG-TCAATTGAGCAGCATCTAACTCATTACCAGCCACGGTTTTCTCCTGGTGGTCCT-CTGCCTTCTTCCAGAT-AAGATTCCTTGACACA-T
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7152765 170 +   9895066 TGACTCTAACAGAGACCTCCA-AGAGAAAATATGTCAAGGTCACTTTATCACCCCCTAAAATACCAAGCACTGCACTCACTTGG-TTAACTGAGCGACATCTAACTCATTACCAGCAACGGCTTTCTCCTGGTGATCCT-CTGCATTCTTCCAGGT-AAGATTCCTTCACACA-T
i cebCap1.NW_016107368v1       C 0 I 84
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e macFas5.chr15                106275291 10799 + 112612857 M

a score=13448.000000
s hg38.chr15_KI270851v1_alt        53301 19 +    263054 gagatgccgaacaatagaa-----------------------------------------------------------------------
s panTro5.chr9                  65536219 13 + 116767853 ------CCGAACAATAGAA-----------------------------------------------------------------------
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87036867 13 + 138149186 ------CCAAACAATAGAA-----------------------------------------------------------------------
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           56205 19 -    142253 gagataccgaacaatagaa-----------------------------------------------------------------------
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75919687 19 + 121039945 gagatactgaacaatagaa-----------------------------------------------------------------------
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     57452 13 -     93100 ------ccaaacaatagaa-----------------------------------------------------------------------
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s cerAty1.NW_012000030v1         1932948 13 +   8072957 ------CCGAACAACAGAA-----------------------------------------------------------------------
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102648457 13 + 108555830 ------CCGAACAATAGAA-----------------------------------------------------------------------
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1294625 13 -   1339302 ------CCGAACAACAGAA-----------------------------------------------------------------------
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6791674 13 -   6934359 ------tcaaacaatagaa-----------------------------------------------------------------------
i colAng1.NW_012115910v1       C 0 C 0
s calJac3.chrUn_GL286352           10562 83 -     21860 -------cgaacaatggacaagcctcctccatcagacagcatccaaCTTTGCAACAAGCCTCCTCCATCAGACAGTGCCCAACTTAGAGA
i calJac3.chrUn_GL286352       C 0 I 1
s saiBol1.JH378203               2619299 39 -   8192610 -------CGAACAATGGACAAGCCTCCTCCAACAGACAGCATCCA--------------------------------------------A
i saiBol1.JH378203             C 0 I 9
e cebCap1.NW_016107368v1         7152935 84 +   9895066 I
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e macFas5.chr15                106275291 10799 + 112612857 M

a score=1667751.000000
s hg38.chr15_KI270851v1_alt        53320 328 +    263054 aagcctcctctatcagacagcgtccaac------------------------------------ttagagcgaccccccgagccgctgacagacccttcccaagatcacccaatcacaactccCATGCTGATGTCAAACTGTAAGTGTTCATGATAGAAACGGTGAGAGTTCCTCTGATGCCGTCCTTCGGAGACCGCGCTCAGCTCCTCAGGCCATGC-TCCCC-CTCAATGCCAAGGGAATCCACC-CGGCTGGTCTAGGTTGGCCTTGCTCACAGGGCTCCTCCTGCAGGCCTTGTGCTGGAGCACATGGAGCGGGAAGGATCTCGGCTTGGACACAGCTTCCTCAGAAAACCTTGTCCGACTC
s panTro5.chr9                  65536232 328 + 116767853 AAGCCTCCTCTATCAGTCGACATCCAAC------------------------------------TTAGAGCGACCCCCCGACCCGCTGGCAGACCCTTCCCCAGATCACCCAATTACAACCCCCATGCTGATATCAAACTGTAATCATTCATGATGGAAACGGTAAGAGTTCCTCTGATGCTGTGCTTCTGACACTGCCCTTAGCCCCTCAGGCCATGC-TCCCC-CTCACTGCCAAGGGAATAAACC-CGGCTGGTCTAGATTGGTCTTGCTCACAGGGCTCCTCCTGTGGGCCTTGTGCTGGAGCACATGGAACAGGAAGGATCTCGGCTTGGACACAGCTTATTCAGAAAACCTTCTCCGACTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87036880 328 + 138149186 AAGCCTCCTCTATCAGTCGACATCCAAC------------------------------------TTAGAGCGACCCCCCGACCCGCTGGCAGACCCTTCCCCAGATCACCCAATTACAACCCCCATGCTGATATCAAACTGTAATAATTCATGATGGAAACGGTAAGAGTTCCTCTGATGCTGTGCTTCTGACACTGCCCTTAGCCCCTCAGGCCATGC-TCCCC-CTCACTGCCAAGGGAATAAACC-CGGCTGGTCTAGATTGGTCTTGCTCACAGGGCTCCTCCTGTGGGCCTTGTGCTGGAGCACATGGAACAGGAAGgatctcggcttggacacagcttattcagaaaaccttctccgactc
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           56224 295 -    142253 aagcctcctctatcagacagcgtccaac------------------------------------ttagagcgaccccccgacccgctgacagacccttcccaagatcacccaatcacaactccCATGCTGATGTCAAACTGTAAGTGTTCATGATAGAAACGGTGAGAGTTCCTCTGATGCCGTCCTTCGGAGACCGCGCTCAGCTCCTCAGGCCATGC-TCCCC-CTCAATGCCAAGGGAATCCACC-CGGCTGGTCTAGGTTGGCCTTGCT---------------------------------CACATGGAGCGGGAAGGATCTCGGCTTGGACACAGCTTCCTCAGAAAACCTTGTCCGACTC
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75919706 328 + 121039945 aagcctcctctatcagacagcgtccaac------------------------------------ttagagtgaccccccgacccactgacagacccttcccaaggtcacccaatcacaaccccCGTGCTGATATCAAACTGTAAGTGTTCATGATAGAAATGGTGAGAGTTCCTCTGATGCCGTCCTTCTGAGACCGTGCTCAGCTCCTCAGGCCATGC-TCCCC-CTCAATGCCGAGGGAATCCACC-TGGCTGGTCTAGGTTGGCCTTGCTCACAGGGCTTCCCCTGCAGGCCTTGTGCGGGAGCACATGGAACAAGAAagatctcggcttggatacagcttcctcagaaaaccttctccgactc
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     57465 327 -     93100 aggcctcctctattagacagcctccaat------------------------------------tccaagcaagcccctgaaccgctgacagatccttcccaagatcacccagtcacaaccccCATGCTGATATCAAACTGTAAG-GTTCTTGATAGAAACGGTGAGAGTTCCTCTGATGCCGTCCTTCTGAGACCACCCTCAGTTGCTCAGGCCATGCTTCCCC--TCACTGCCAAGGGAATCCACC-CGGCTGGTCTAGGTCGGCCTTGCTCACGGGGCTCCTCCTGCAGGCCTTGTGCTGGAGCACAAGGAACAGGAAGgatctcggcttggacaaagcttcctcagaaaaccttctccaactc
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s cerAty1.NW_012000030v1         1932961 321 +   8072957 CAGCCTCCTCTGTCAGACGGCGTCCGAC------------------------------------TCACAGCGACCCCCCGACCCGCCGGCAGACCCTTCCCCAGATCACCCAGGCCCAACCCCCGTGCTGATATAAAGGTGCAAGCGCTCCTGACAG-AGCGGTGGGAGTTTCTCTGACGCTGTGCCTCCGAGGCCGCCCTCAGCCCCTCAGGCCGGGC-TCCCC--TCACTGCCAAGGGCATCCGCC-C-GCTTGTCTGGGTCGGTCTTGCTCACGGGG-TCCTCCTGCGGGCCTTGTGCTGGAGCACATGGAACAGGAAGGATCTCGGGGTGGACACAGCTTCCTCCGAAACCCTT---CGACTC
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102648470 310 + 108555830 AAGCCTCCTCTATCA----------GAC------------------------------------TCAGAGCGACCCCCCGACCCGCTGGCAGACCCTTCCCCAGATCACCCAGGCCCAACCCTCGTGCTGATATAAAGGTGCAAGCGTTCCTGACAC-AGCGGTGGGAGTTTCTCGGACGCTGTGCTTCGGAGGCCG-CCTCAGCCCCTCAGGCCAGGC-TCCCC--TCACTGCCAAGGGAATCCACC-C-GCTTGTCTGGGTTGGTCTTGCTCACGGGG-TCCTCCTGCGGACCTTGTGCTGGAGCTCATGGAACAGGAAGGATCTCGGCTTGGACACAGCTTCCTCCGAAACCCTT---CGACTC
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1294638 319 -   1339302 CAGCCTCCTCTGTCAGACGGCGTCCGAC------------------------------------TCACAGCGACCCCCCGACCCGCCGGCAGACCCTTCCCCAGATCACCC-GGCCCAACCCCCGTGCTGGTATAAAGGTGCAAGCGTTCCCGACAG-AGCGGTGGGAGTTTCTCTGACGCTGTGCCTCCGAGGCCGCCCTCAGCCCCTCAGGCCGGGC-TCCCC--TCACTGCCAAGGGCATCCGCC-T-GCTTGTCTGGGTCGGTCTTGCTCACAGGG-TCCTCCTGCGGGCCTTGTGCTGGAGCACATGGAACAGGAAGGATCTCGGGGTGGACGCAGCTTCCTCCCAAACCCTT---CGACT-
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6791687 328 -   6934359 aagcctcctctattagacagcgtccaat------------------------------------ttcgagcaagcccctgaaccgctgacagacccttcccaagatcacccagtcacaaccccCATGCTGATATCAAACTGTAAGCATTCATGATAGAAACGGTGAGAGTTCCTCTGATGCCGTCCTTCTGAGACCGCCCTCAGTTCCTCAGGCCATGC-TCCCC-TTCACTGCCAAGGGAATCCACC-CGGTTGGTCTAGGTCGGCCTTGCTCAGGGGGCTCCTCCTGCAGGTCTTGTGCTGGAGCACACAGAACAGGAAGGATATCGGCTTGGACAAAGCTTCCTCAGAAAACCTTCTCCGACTC
i colAng1.NW_012115910v1       C 0 C 0
s calJac3.chrUn_GL286352           10646 326 -     21860 AAGCCTCCTTCATCAGACAGCGTCCAAC------------------------------------TTCGAGCAAACCCTTGACCCTCTGACAGACCCTTCCTCATATCACCCAGTCACAACCCCCATGCAGATACAAAACTGTAAGCATTGATAATAGAAACAGTGAGAGTTCCTCTGATGCCATCCTTCTGAGACTGCCCTCAGCTCCTCAGGCCATGC-CCTTCCCTCACTGCCAAGGGAATCCCCC-TGGCTCCTCTTGGTTGGCCTTGCTCATGGAG---CTCCTGCAGGCCTTGCACTGGAGCACATGGAATGGGAAGgatctcagcttggacacagcttcctcagaaaaccttctccaactc
i calJac3.chrUn_GL286352       I 1 C 0
s saiBol1.JH378203               2619347 363 -   8192610 AAGCCTCCTCCATCAGACAGTGTCCAACTTAGAGACAAGCCTCCTCCATCAGAGAGCATCCAAATTAGAGCAAATCCGTGACCCTCTGATAGACCCTTCCTCAGATCACCCAGTCACAACCCCCATGCTGATACAAAACTGTAAGCATTGATAATAGAAACAGTGAGAGTTCCTCTGACGCCGTCCTTCCGAGGCTGCCCTCAGCTCCTCAGGCCATGC-CCTGCTCTCACTGCCAAGGGAATCCCCCACAGAGGGTCTAGGTTGGTCTTGCTCACGGGG---CTCCTGCGGGCCTTGCGCTGGAGCACATGGAACGGGAAGGATCTTGGCTTGGACACAGCTTCCTCAGAAAACCTTCTCCGACTC
i saiBol1.JH378203             I 9 C 0
s cebCap1.NW_016107368v1         7153019 326 +   9895066 AAGCCTCCTCCATCAGATAGTGTCCAAA------------------------------------TTAGAACAAACCCCTGACCCTCTGACAGACCCTTCCTCAGATCATCCAGTCACAACCCCCATGCTGATACAAAACTGTAAGCATTGATAATAGAAATGATGAGAGTTCCTCTGATGCCATCCATCTGAGACTGCCCTCAGCTCCTCAGGCCATGC-CCTGCCCTCACTGCCAAGGGAATCCCCC-CAGCTCCTCTAGGTTGGCCTTGCTCATGGGG---CTCCTGTGGGCCTTGTGCTGGAGCACATGGAACGGGAAGGATCTCGGCTTGGTCACAGCTTCCTCAGGAAACCTTCTCTGACTC
i cebCap1.NW_016107368v1       I 84 C 0
e macNem1.NW_012012133v1        22657931 5640 +  28977278 M
e macFas5.chr15                106275291 10799 + 112612857 M

a score=1381264.000000
s hg38.chr15_KI270851v1_alt        53648 230 +    263054 CCCTGTGAGGGCAGGCCCCCTGTGCTGGGTTCCCCACCCTGGCCCTTCCTCCCTTGTGACAATCTCTGCATGCCTGGGTATGTTTCTCCTAGAACCCTGAAATCTTCTGGTGGGCCCAATGAGGAGGGAGGTGTGCCTGACCACCTGACCACACTCCCGGTACTGACTGTGGCCCCTGTTAAAAATTGTTTCATAAAATCTTCTTAGTTAATGGGCACAGGAAGTAAAGC
s panTro5.chr9                  65536560 222 + 116767853 CCCTATGAGGCCAGGTCCCCTGTGCTGGGTTCCCCAACCTGGCCCTTCTTCCCTTGTGACAGCCTCTCCACACCTGGGCATGTTTCTCCCAGAACCCTGAAAGCTTCTGGTGGGCCCAGTGAGGACGGAGGCGTG--------CCTGACCACACTCCCGGTACTGACTGTGGCCCCTGTTGTAAATTGTTTCATAAAATCTTCTTAGTTAATGGGCACAGGAATCAATGC
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87037208 222 + 138149186 ccctatgaggccaggtcccctgtgctgggttccccaacctggcccttcttcccttgtgacagcctctccacacctgggcatgtttctcccagaaccctgaaagcttctggtgggcccagtgaggacggaggcGTG--------CCTGACCACACTCCCGGTACTGACTGTGGCCCCTGTTGTAAATTGTTTCATAAAATCTTCTTAGTTAATGGGCACAGGAATCAATGC
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           56519 229 -    142253 CCCTGTGAGGGCAGG-CCCCTGTGCTGGGTTCCCCACCCTGGCCCTTCCTCCCTTGTGACAATCTCTGCATGCCTGGGCATGTTTCTCCTAGAACCCTGAAATCTTCTGGTGGGCCCAATGAGGAGGGAGGCGTGCCTGACCACCTGACCACACTCCCGGTACTGACTGTGGCCCCTGTTAAAAATTGTTTCACAAAATCTTCTTAGTTAATGGGCACAGGAAGTAAAGC
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75920034 222 + 121039945 ccctgtgagggcaggccccctgtgctgggttccccaccctggcccttcttcccttgtggcaACCTCTGCACGCCTGGGCATGTTTCTCCTAGAACCCTGAAAGCTTGTGGTGGGCCCAGTGAGGAGGGAGGCTTG--------CCTGACCACACTCCTGGTACTGACTGTGGCCCCTGTTAAAAATTGTTTCATAAAATCTTCTTAGTTAATGGGCACAGGAAGTAAGCC
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     57792 222 -     93100 ccctatgaggtcagactccctgtgctgggtttcccaccctggcccttctTCCCTTGTGACATCCTCTGTACACCTGCGCATGTTTCTTCTAGAACCCTAAATGCTTCTGGTGGGCCCAGTGAGGAGGGAGGCATG--------CCTGACCACACTCCCGGTACTGACTGTGGCCCTTGTTAAAAATTGTTTCATAAAATCTCCTTAGTTAATGGGCACAGGAATCAATGC
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macNem1.NW_012012133v1        22663596 210 +  28977278 CCCTGCGAGGCCAGGCTGCCTGTGCTGGGTTCCCCGCCCTGGCCCT--TTCCCCTGTGACAGCCTCTGCAGGCCTGGACATGTTTCTCCCAGAACCCTGAAAGCCTCTGGTGGGCCCGGTGAGGAGGG-GGCGCG--------CCTGACCACACTCCCGCTAC------TGTCCTCTGTTATAAATTATTTCATAACAT---CTTAGTTAACGGGCACAGGGATCCATGC
i macNem1.NW_012012133v1       M 5640 C 0
s cerAty1.NW_012000030v1         1933282 208 +   8072957 -CCTGCGAGGCCAGGCTGCCTGTGCTGGGTTCCCCGCCCTGGCCCT--TTCCCCTGTGACAGCCTCTGCAGGCCTGGACATGTTTCTCCCAG-ACCCTGAAAGCTTCTGGTGGGCCCGGTGAGGAGGG-GGCGCG--------CCTGACCACACTCCCGCTAC------TGTCCTCTGTTATAAATTATTTCATAACGT---CTTAGTTAACGGGCACAGGGATCCATGC
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102648780 209 + 108555830 CCCTGCGAGGTCAGGCTGCCTGTGCTGGGTTCCCCGCCCTGGCCCT--TTCCCCTGTGACAGCCTCTGCAGGCCTGGACCTGTTTCTCCCAG-ACCCTGAAAGCTTCTGGTGGGCCCGGTGAGGAGGG-GGCGCG--------CCTGACCACACTCCCGGTAC------CGTCCTCTGTTATAAATTATTTCATAACAT---CTTAGTTAACGGGCACAGGGATCAGTGC
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1294957 209 -   1339302 CCCTGCGAGGCCAGGCTGCCTGTGCTGGGTTCCCCGCCCTGCCCCT--TTCCCCTGTGACAGCCTCTGCAGGCCTGGACATGTTTCTCCCAG-ACCCTGAAAGCTTCTGGTGGGCCCGGTGAGGAGGG-GGCGCG--------CCTGACCACACTCCCGCTAC------TGTCCTCTGTTATAAATTATTTCATAACAT---CTTAGTGAACGGGCACAGGGATCCATGC
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6792015 222 -   6934359 CCCTGTGAGGCCAGGCCCCCTGTGCTGGGTTTCCCACCCTGGCCCTTCTTCCCTTGTGACATCCTCTGCACACCTGCGCATGTTTCTCCTAGAACCCTGAACGCTTCTGGTGGGCCCAGTGAGGAGGGAGGCATG--------CCTGACCGCACTCCCAGTACTGACTGTGGCCCTTGTTAAAAATTGTTTCATAAAATCTCCTTAGTTAATGGGCACAGGAATCAATGC
i colAng1.NW_012115910v1       C 0 C 0
s calJac3.chrUn_GL286352           10972 217 -     21860 ccctgtgaggccaggccccctgtgctggattccccACCCTGGCCCTTATTTCCTTGTGACAGCCTCTGCAC-CCTGGGCATCTTTCTCCCAGAACCCTGAAAGCTTCTTGTGGGCCCTGTGAGGAAGGAGGCATG--------CCTGACCACACTTCCGGAACTTACTGTGGCC-CTGTTACAAATTGTTTCATAAAATCTTCTTAGTTAATGGGCA---GAGTCAGTGC
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2619710 220 -   8192610 CCCTGTGAGGCCAGGCTCCTCGTGCTGGATTCTGCACCCCGGCCCTTCTTCCCTTGCGACAGCCTCTGCAC-CCTGGGCATTTTTCTCCCAGAACCCTGAAAGCTTCTTGTGGGCCCAGTGAGGAGGGAGGTGTG--------CCTGGCCATACTCCCGGAACTTACTGTGGCC-CTGTTATAAATTGTTTCATAAAATCTTCTTAGTTAATGGGCACAGGAATTCATGC
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7153345 219 +   9895066 CCCTTTGAGGCCAGGC-CCGTGTGCTGGATTCCCCACCCTGGCCCTTCTTCCCTTGTGACAGCCTCTGCAC-CCTGGGCATCTTTCTCCCAGGACCCTGAAAGCTTCTTGTGGGCCCAGTGAGGAGGGAGGTGTG--------CCTGACCACACTCCTGGAACTTACTGTGGCC-CTGTTATAAATTGTTTCATAAAATCTTCTTAGTTAATGGGCACAGGAATCAATGC
i cebCap1.NW_016107368v1       C 0 C 0
e macFas5.chr15                106275291 10799 + 112612857 M

a score=2696862.000000
s hg38.chr15_KI270851v1_alt        53878 344 +    263054 TTCCTAATCTACCTCATATATAAGTTGCATCACTAAAATCATATTTTCATAAAGGGTATTAGCTCTTTCCAGTAGCCAATATAAT---------GTTTCAAGGAAAATTTGTAAAAATAAATGTGGCATTGATACTTCAAATTTAGTGGTATAAAGAAATTTCCAAATTCAAATTATTCCATCTAAGTTACTTATTTTATAGATCAAATATGAATA-TTCTTGTAAGTTTTGAAATACTTCAGAGTAAAATTCTGAAG-TTTAGATAATACAAATTAAAAAGCAATTTTTCTTAAAAACA----TTCTAATGTGCCACAAATTTATTTTTAAAAACTCTTACCAAAGAAGATGT-ATTTT
s panTro5.chr9                  65536782 339 + 116767853 TTCCTAATCTACCTCATACATAAGTTGCATCACTAAAATCATATTTTCATAAAGTGTCTTAACTCTTTCCAGTAGCCAATATAAT---------GTGTCAAGGAAAACCTGTAAAAATAAA-ATGGCATCGATACTTCAAATTTAGTGGTATAAAGAAATTTCCAAATTCAAATTATTCC----AAGTTACTTATTTTATAGGTCAAATATGAATA-TTCTTGTAAGTTTTTTAATTCTTCAACGTAAATTTCTGATG-TTTAGAGAATACAAACTAAAAACAAATTTTGCTTCAAAACA----TTCTAATGTGCCACAAATTCATTTTAAAAAACTATTACAAAAGAGGATAT-ATTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87037430 339 + 138149186 TTCCTAATCTACCTCATACATAAGTTGCATCACTAAAATCATATTTTCATAAAGTGTCTTAACTCTTTCCAGTAGCCAATATAAT---------GTGTCAAGGAAAACCTGTAAAAATAAA-ATGGCATCGATACTTCAAATTTAGTGGTATAAAGAAATTTCCAAATTCAAATTATTCC----AAGTTACTTATTTTATAGGTCAAATATGAATA-TTCTTGTAAGTTTTTTAATTCTTCAATGTAAATTTCTGATG-TTTAGAGAATACAAACTAAAAACAAATTTTGCTTCAAAACA----TTCTAATGTGCCACAAATTCATTTTAAAAAACTATTACAAAAGAGGATAT-ATTTT
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           56748 344 -    142253 TCTCTAATCTACCTCATATATAAGTTGCATCACTAAAATCATATTTTCATAAAGGGTATTAGCTCTTTCCAGTAGCCAATATAAT---------GTTTCAAGGAAAATCTGTAAAAATAAATGTGGCATTGATACTTCAAATTTAGTGGTATAAAGAAATTTCCAAATTCAAATTATTCCATCTAAGTTACTTATTTTATAGATCAAATATGAATA-TTCTTGTAAGTTTTGAAATGCTTCAAAGTAAAATTCTGAAG-TTTAGATAATACAAATTAAAAAGCAATTTTTCTTAAAAACA----TTCTAATGTGCCACAAATTTATTTTTAAAAGCTCTTACCAAAGAAGATGT-ATTTT
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75920256 344 + 121039945 TTCCTAATCTACCTCATATACAAGTTGCATCACTAAAATCATATTTTCATAAAGAGTATTAACTCTTTCCAGTAGCCAATATAAT---------GTTTCAAGGAAAATTTGTAAAAATAAATGTGGCATTGATACTTCAAATTTAGTGGTATAAAGAAATTTCCAAATTCAAATTATTCCATCTAAGTCACTTATTTTATAGGTCAAATATGAATA-TTCTTGTAAGTTTTGAAATCCTTCAAAGTAAAATTCTGATG-TTTAGATAATACAAACTAAAAAGCAATTTTTCTTAAAAACA----TTCTAATGTGCCACAAATTTATTTTAAAAAACTCTTACCAAAGAAGATGT-ATTTT
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     58014 346 -     93100 TTCC---TCTACCTCATATATAAGTTTCATCACAAAAATCATATTTTCATGAAGGGTCTTAACTCTTTCCAGTAGCCAATATCAT---------GTTTCAAAGAAAATCTGTAAAAATAAA-ATGGCATTAAAACTTCAAATTTCGTGGTAAAAAGAAATTTTCAAATTCAAATTTTTCCATCTAAGTTATTTATTTTATAGGCCAAATATGAATACTCCTTGTAAGTTTTGAAATCCTTCAAAGTAAAATTCTGATG-TTTAGAGAATACAAACTAAAAAGCAATTTTGCTTAAAAACATTCTTTCTAATGTGCCACAAATTTAGTTTTAAAAACGATTACCAAAGAAGATGCTATTTT
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macFas5.chr15                106286090 346 + 112612857 TTCCTTATCTGCCTCATACATAAGTTGCATCACTAAAATCATATTTTCATAAAGGGTCTTAACTCTTTCCAGTAGCTAATATAAT---------GTGTCAAGGAAAATCTGTAAAAATAAA-ATGGCATTGATAGTTCTAATTTAGTGGTATAAAGAAATTTCCAGATTCAAATTATTCCATCTAAGTTACTTATTTTATAGGTCAAATATGAATG-TTCTAGTAAGTTTTTTAATTCTTCAAAGTGAACTTCTGACG-TTTAGAGAATACAAACTAAAAAGCAATTTTGCTTTAAAACATTCTTTCTAATGTGCCACAAATTCATTTTAAAAAACTATTACCAAAGAGGATAT--TTTT
i macFas5.chr15                M 10799 C 0
s macNem1.NW_012012133v1        22663806 346 +  28977278 TTCCTTATCTGCCTCATACATAAGTTGCATCACTAAAATCATATTTTCATAAAGGGTCTTAACTCTTTCCAGTAGCTAATATAAT---------GTGTCAAGGAAAATCTGTAAAAATAAA-ATGGCATTGATAGTTCAAATTTAGTGGTATAAAGAAATTTCCAAATTCAAATTATTCCATCTAAGTTACTTATTTTATAGGTCAAATATGAATG-TTCTAGTAAGTTTTTTAATTCTTCAAAGTAAACTTCTGACG-TTTAGAGAATACAAACTAAAAAGCAATTTTGCTTTAAAACATTCTTTCTAATGTGCCACAAATTCATTTTAAAAAACTATTACCAAAGAGGATAT--TTTT
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1933490 347 +   8072957 TTCCTTATCTGTCTCATATATAAGTTACATCACTAAAATCATATTTTCATAAAGGGTCTTAACTCTTTCCAGTAGCCAATATAAT---------GTGTCAAGGAAAATCTGTAAAAATAAA-ATGGCATTAATAGTTCAAATTTAGTGGTATAAAGAAATTTCCAAATTCAAATTATTCCATCTAAGTTACTTATTTTATAGGTCAAATATGAATA-TTCTAGTAAGTTTTTTAATTCTTCAAAGTAAACTTCTGACG-TTTAGAGAATACAAACTAAAAAGCAATTTTGCTTTAAAACATTCTTTCTAATGTGTCACAAATTCTTTTTAAAAAGCTATTACCAAACAGGATAT-ATTTT
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102648989 345 + 108555830 TTCCTTATCTGCCTCATATATAAGTTGCATCACTAAAATCATATTTTCATAAAGGGTCTTAACTCTTTCCAGTAGCCAATATAAT---------GTGTCAAGGAAAATCTGTAAAAATAAA-ATGGCATTGATAGTTCAAATTTAGTGGTATAAAGAAATTTCCAAATTCAAATTATTCCATCTAAGTTACTTATTTTATAGGTCAAATATGAATA-TTCTAGTAAGTTTTTTAATTCTTTAAAGTAAACTTCTGACG-TTTAGAGAATACAAACTACAAAGCAATTTTGCTTTAAAACATTCTTTCTAATGTGCCACAAATTCATTTTAAAAAACTATTACC-AAGAGGATAT--TTTT
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1295166 346 -   1339302 TTCCTTATCTGCCTCATACATAAGTTGCATCACTAAAATCATATTTTCATAAAGGGTCTTAACTCTTTCCAGTAGCTAATAGAAT---------GTGTCAAGGAAAATCTGTAAAACTAAA-ATGGCATTGAAAGTTCAAATTTAGTGGTATAAAGAAATTTCCAGATTCAAATTATTCCATCTAAGTTACTTATATTATAGGTCAAATATGAATA-TTCTAGTAAGTTTTTTAATTCTTCAAAGTAAACTTCTGACG-TTTAGAGAATACAAACTAAAAAGCAATTTTGCTTTAAAACATTCTTTCTAATGTGCCACAAATTCATTTTAAAAAACTATTACCAAAGAGGATAT--TTTT
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6792237 346 -   6934359 ---CTCCTCTACCTCATATGTAAGTTGCATCACAAAAATCATATTTTCATGAAGGGTCTTAACTCTTTCCAGTAGCCAATATCAT---------GTTTCAAAGAAAATCTGTAAAAATAAA-ATGGCATTAAAACTTCAAATTTCGTGGTAAAAAGAAATTTTCAAATTCAAATTTTTCCATCTAAGTTATTTATTTTAGAGGCAAAATATGAATA-TCCTTGTAAGTTTTGAAATCCTTCAAAGTAAAATTCTGATGTTTTAGAGAATACAAACTAAAAAACAATTTTGCTTAAAAACATTCTTTCTAATGTGCCACAAATTTAGTTTTAAAAACGATTACCAAAGAAGATGTTATTTT
i colAng1.NW_012115910v1       C 0 C 0
s calJac3.chrUn_GL286352           11189 354 -     21860 TTCCCAATCTACCTCATACACAAGTTGCATCACTAAAATCATCCTTTCATAAAGGGTCTGAACTCTTTTCAGTACCCAATATAATGAATATAATGTTTTAAGGAAAATCCATAAGAATAAA-ATGACATTGATACTTCAAATTTAGT-GCATAAAGAAATTTCTAAATTCAAATTATTCCATCTAAGTTACTTATTTTATAGGTCAGGTATGAATA-TTCTTGTAAGTTTTT-AATCCTTCAAAGTAAAATTCTGGTG-TTTAGAGAATACAAACTAAAAAGCAATTTTGCTTCAAAATATTTTTTCTAATGTGCCACAAATTTATTTTAAAAAACTATTACCAAAGAAGATGT-AGTTT
i calJac3.chrUn_GL286352       C 0 C 0
s saiBol1.JH378203               2619930 354 -   8192610 TTCCCAATCTACCTCATACGCAAGTTGCATCACTAAAATCATCCTTTCATAAAGGGTCTGAACTCTTTTCAGTACCCAATATAATGAATATAACGTTTCAAGGAAAATCTGTAAGAATAAA-ATGGCATCGATACTTCAGATTTAGT-GTATAAAGAAATTTCCAAATTCTAATTATTCCATCTAAGTTACTTATTTTGTAGATCAGGTATGAATA-TTCTTGTAAATTTTT-AATCCTTTAAAGTAAAATTCTGGTG-TTTAGAGAATACAAACTGAAAAGCAATTTTGCTTCAAAATATTTTTTCTAATGTGCCACAAATTTATTTTTAAAAACTATTACCAAAGAAGATGT-AGTTT
i saiBol1.JH378203             C 0 I 544
s cebCap1.NW_016107368v1         7153564 354 +   9895066 TTCCCAATCTGCCCCATACACAAGTTGCATCACTAAAATCATCCTTTCATAAAGGGTCTGAACCCTTTTCAGTACCCAATATAATGAATATAATGTTTCAAGGAAAATCTGTAAGAATAAA-ATGGCATTGATACTTCAGATTTAGT-GTATAAAGAAATTTCCAAATTCAAATTATTCAATCTAAGTTACTTATTTTATAGGTCAGGTATGAATA-TTCTTGTAAGTTTTT-AATCCTTCAAAGTAAAATTCTGGTG-TTTAGAGAATACAAACTGAAAAGCAATTTTGCTTCAAAATATTTTTTCTAATGTGCCACAAATTTATTTTAAAAAACTATTACCAAAGAAGATGT-AGTTT
i cebCap1.NW_016107368v1       C 0 I 546

a score=5499.000000
s hg38.chr15_KI270851v1_alt        54222 1 +    263054 T
s panTro5.chr9                  65537121 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87037769 1 + 138149186 T
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           57092 1 -    142253 T
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75920600 1 + 121039945 T
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     58360 1 -     93100 T
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macFas5.chr15                106286436 1 + 112612857 T
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22664152 1 +  28977278 A
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1933837 1 +   8072957 T
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102649334 1 + 108555830 T
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1295512 1 -   1339302 T
i manLeu1.NW_012105664v1       C 0 C 0
s calJac3.chrUn_GL286352           11543 1 -     21860 T
i calJac3.chrUn_GL286352       C 0 I 540
s saiBol1.JH378203               2620828 1 -   8192610 T
i saiBol1.JH378203             I 544 C 0
s cebCap1.NW_016107368v1         7154464 1 +   9895066 T
i cebCap1.NW_016107368v1       I 546 C 0
e colAng1.NW_012115910v1         6792583 0 -   6934359 C

a score=67354.000000
s hg38.chr15_KI270851v1_alt        54223 9 +    263054 AAGTAATTT
s panTro5.chr9                  65537122 9 + 116767853 AAGTAATTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87037770 9 + 138149186 AAGTAATTT
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           57093 9 -    142253 AAGTAATTT
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75920601 9 + 121039945 AAGTAATTT
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     58361 9 -     93100 AAGTAATTT
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macFas5.chr15                106286437 9 + 112612857 AAATAATTT
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22664153 9 +  28977278 AAGTAATTT
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1933838 9 +   8072957 AAGTAGTTT
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102649335 9 + 108555830 AAGTAATTT
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1295513 9 -   1339302 AAGTAATTT
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6792583 6 -   6934359 ---TAATTT
i colAng1.NW_012115910v1       C 0 C 0
s saiBol1.JH378203               2620829 9 -   8192610 AAGTAATTT
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7154465 9 +   9895066 AAGTAATTT
i cebCap1.NW_016107368v1       C 0 C 0
e calJac3.chrUn_GL286352           11544 540 -     21860 I

a score=701615.000000
s hg38.chr15_KI270851v1_alt        54232 96 +    263054 AAATATACAACTTGCATCAGACACATATATTGTAAATACACCCTTCCAAAAATGAGGAGCAGCTATGTGTTTACTTTAACATCTAAGATGCTGAAA--
s panTro5.chr9                  65537131 94 + 116767853 AAATATACAACTTCCAACAGACACACATATTGTAAATCCACTCTTCTAAAAATGAGGAGCAGCTATATTTTTACCTTAACATCCAAAATGCTGA----
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87037779 94 + 138149186 AAATATACAACTTCCAACAGACACACATATTGTAAATCCACTCTTCTAAAAATGAGGAGCAGCTATATTTTTACCTTAACATCCAAAATGCTGA----
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           57102 96 -    142253 AAATATACAACTTGCATCAGACACATATATTGTAAATCCACCCTTCCAAAAATGAGGAGCAGCTATGTGTTTACTTTAACATCTAAGATGCTGAAA--
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75920610 96 + 121039945 AAATATACAATTTGCATCAGACACATATATTGTAAATCTAGTCTTCTAAAAATGAGGAGCAGCTATGCGTTTACTTTAACATCTAAGATGCTGAAA--
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     58370 89 -     93100 AAATATACAACTTGC-----ACACACATACTGTAAATCCACTCTTGTAAAAATGAGGAGCAGCTATATGTTTACTTTAACATCTAAGATGCTGA----
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macFas5.chr15                106286446 94 + 112612857 AAATATACAACTTGCAACAGACACACATACTGTAAATCCAGTCTTCTGCAAATGAGGAGCAGCTATATGTTTACCTTAACATCCAAAATGCTGA----
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22664162 94 +  28977278 AAATATACAACTTGCAACAGACACACATACTGTAAATCCAGTCTTCTGCAAATGAGGAGCAGCTATATGTTTACCTTAACATCCAAAATGCTGA----
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1933847 94 +   8072957 AAATGTACAACTTGCAACAGACACACATACTGTAAATCCACTCTTCTGCAAATGAGGAGCAGCTATATGTTTACCTTAACATCCAAAATACTGA----
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102649344 94 + 108555830 AAATATACAACTTGCAACAGACACACATGCTGTAAATCCACTCTTATGCAAATGAGGAGCAGCTATATGTTTACCTTAACATCCAAAATGCTGA----
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1295522 92 -   1339302 AAATATAC--CTTGCAACAGACACACATACTGTAAATCCACTCTTCTGCAAATGAGGAGCAGCTATATGTTTACCTTAACATCCAAAATGCTGA----
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6792589 89 -   6934359 AAATATACAACTTGC-----ACACACATATTGTAAATACACTCTTGTAAAAATGAGGAGCAGCTATATGTTTACTTTAACATCGAAGATGCTGA----
i colAng1.NW_012115910v1       C 0 C 0
s calJac3.chrUn_GL286352           12084 96 -     21860 AGATATACAACTTGCCACAAATATATACATTGTAAATCCACTCTTCCAAAAATAAGGAGCAGCTATATATTTACTTTCACATCTAAAATGCTGA--AA
i calJac3.chrUn_GL286352       I 540 C 0
s saiBol1.JH378203               2620838 96 -   8192610 AAATATACAATTTGCAACAAATATATATATTGCAAATCCACTCTTCTAAAAATGAGGAGCAGCTGTATGTTTACTTTCACATCTAAAATGCTGA--Aa
i saiBol1.JH378203             C 0 C 0
s cebCap1.NW_016107368v1         7154474 95 +   9895066 AAATATACAACTTGCAACAAATATATATATTGT-AATCCACTCTTCTAAAAATGAGGAGCAGCTATATGTTTACTTTCACATCTAAAATGCTGA--Aa
i cebCap1.NW_016107368v1       C 0 N 0

a score=4644.000000
s hg38.chr15_KI270851v1_alt        54328 3 +    263054 TA---T
s panTro5.chr9                  65537225 2 + 116767853 -A---T
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87037873 2 + 138149186 -A---T
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           57198 3 -    142253 TA---T
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75920706 3 + 121039945 TA---T
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     58459 5 -     93100 -AATCT
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macFas5.chr15                106286540 2 + 112612857 -A---T
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22664256 2 +  28977278 -A---T
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1933941 2 +   8072957 -A---T
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102649438 2 + 108555830 -A---T
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1295614 2 -   1339302 -A---T
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6792678 5 -   6934359 -AATCT
i colAng1.NW_012115910v1       C 0 C 0
s calJac3.chrUn_GL286352           12180 3 -     21860 TA---T
i calJac3.chrUn_GL286352       C 0 N 0
s saiBol1.JH378203               2620934 3 -   8192610 ta---t
i saiBol1.JH378203             C 0 N 0

a score=1105663.000000
s hg38.chr15_KI270851v1_alt        54331 223 +    263054 CTATATAACAGGTCACGTACTTAAAGCCACATGTAAAACAGGGGATTGAGAAATAATTCAGCATGCATATTTGTTCTGTTTGAAA--TTTTTTTAATTATTGAAAATAATTGAAAATCTTACAAAACATCATCTGTTTGAAAGATGTTAGAAAAGAGAGGGTAGAAAAATAGGACTGCATTCTTATTGCCTAACAGTTTAACCTCAGTTATAAATACACACATAT
s panTro5.chr9                  65537227 224 + 116767853 CTATAAAACGGGTTGCTTATTTACAACCACGTGTAAAATAGGGTATTGATAAATAATTCGGCATGCATATTCGTTCTGTTGGAAA-TTTTTTTTAATTATTGAAAATAATTGAAAATCTTACAAAACATCATCTGTTTGAAAGATGTTAGAAAAGAGAGGGTAGAAAAATAGGACTACATTCTTATTGTGTAACGGCTCAACCTCAGTTATAAATGCACACATAT
i panTro5.chr9                 C 0 I 56
s panPan2.chr9                  87037875 224 + 138149186 CTATAAAACGGGTTGCTTATTTACAACCACGTGTAAAATAGGGTATTGATAAATAATTCGGCATGCATATTCGTTCTGTTGGAAA-TTTTTTTTAATTATTGAAAATAATTGAAAATCTTACAAAACATCATCTGTTTGAAAGATGTTAGAAAAGAGAGGGTAGAAAAATAGGACTACATTCTTATTGTGTAACGGCTCAACCTCAGTTATAAATGCACACATAT
i panPan2.chr9                 C 0 I 56
s gorGor5.CYUI01000350v1           57201 223 -    142253 CTATATAACAGGTCACGTACTTAAAGCCACATGTAAAATAGGGGATTGATAAATAATTCAGCATGCATATTTGTTCTGTTTGAAA--TTTTTTTAATTATTGAAAATAATTGAAAATCTTACAAAACATCATCTGTTTGAAAGATGTTAGAAAAGAGAGGGTAGAAAAATAGGACTGCATTCTTATTGCCTAACAGTTTAACCTGAGTTATAAATACACACATAT
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75920709 223 + 121039945 CTATACAACAGGACACTTACTTACAGCCACATGTAAAATAGGGGATTGATAAATAATTCAGCATGCATATTTGTTCTGTTCGAAA--TTTTTTTAATTATTGAAAATAATAGAAAATCTTACAAAGCATCATCTGTTTAAAAGATGTTAGAAAAGAGAGGGTAGAAAAATACGACTGCATTCTTATTGCCTAATGGTTTAACCTCAGTTACAAatacacacatat
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     58464 222 -     93100 CTATACAATACATTGCTTATTTACAACCACATGTAAAATAGGGGATTGATAAATAATTCAGCCTGCATATTTGTTCTGTTTG---ATTTTTTAAAATTATTGAAAATAATTGAAAATCTTACAAAACATCATCTGTTTGAAGGATGTTAGAAAAGAGAGGGTCGAAAAATAGGACTGCACATTTATTGCTTAATGGTTTAACTTCAGTTATAAATACACACATAT
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macFas5.chr15                106286542 225 + 112612857 CTATACAACGGGTTGCTTATTTACAACCACATGTAAAATAGGGTATTGATAAATAATTCTGCATGCGTATTTGTTCTGTTTGATCATTTTTAAAAATTATTGAAAAGAATTGAAAATCATCCAAAACATCATCTGTTTGAAAGGTGTTAGAAAAGAGAGGGTAGAAAAATAGGACTGCATTCTTATTGCCTAATGGTTTAACCTCAGTTATAAATACACACGTAT
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22664258 225 +  28977278 CTATACAACGAGTTGCTTATTTACAACCACATGTAAAATAGGGTATTGATAAATAATTCTGCATGCGTATTTGTTCTGTTTGATCATTTTTAAAAATTATTGAAAAGAATTGAAAATCATCCAAAACATCATCTGTTTGAAAGGTGTTAGAAAAGAGAGGGTAGAAAAATAGGACTGCATTCTTATTGCCTAATGGTTTAACCTCAGTTATAAATACACACGTAT
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1933943 222 +   8072957 CTATACAACGGGTTGCTTATTTACAACCACATGTAAAATAGGGTATTA--CAATAATTCAGCATGCATATTTGTTCTGTTAGAAAAGTTTCT-TAATTAATGAAAAGAATTGAAAACCTTCCAAAACATCATCTGTTTGAAAGGTGTTAGAAAAGAGAGGGTAGAAAAATAGGACTGCATTCTTATTGCCTAACGGTTTAACCTCAGTTATAAATACACACATAT
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102649440 225 + 108555830 CTATACAACAGGTTGCTTATTTACAACCACATGTAAAATAGGGTATTGATAAATAATTCAGCATGCGTATTTGTTCTGTTTGATCATTTTTAAAAATTATTGAAAAGAATTGAAAATCATCCAAAACATCATCTGTTTGAAAGGTGTTAGAAAAGAGAGGGTAGAAAAATAGGACTGCATTCTTATTGCCTAATGGTTTAACCTCACTTATAAATACACACATAT
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1295616 222 -   1339302 CTATACAACGGGTTGCTTATTTACAACCACATGTAAAATAGGGTATTA--CAGTAATTCAGCATGCGTATTTGTTCTTTTGGAAAAGTTTT-TTAATTATTGAAAAGAATTGAAAATCTTCCAAAACATCATCTGTTTGAAAGATGTTAGAAAAGAGAGTGTAGAAAAATAGGACTGCATTCTTATTGCCTAACGGTTTAACCTCAGTTGTAAATACACACATAT
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6792683 224 -   6934359 CTATACAATACATTGCTTATTTACAACCACATGTAAAATAGGGGATTGATAAATAATTCAGCCTGCATATTTGTTCTGTTTG-TGATTTTTTAAAATTATTGAAAATAATTGAAAATCTTACAAAACATCATCTGTTTGAAGGATATTAGAAAAGAGAGGGTAGAAAAATAGGACTGCATATTTATTGCTTAATGGTTTAACTTCAGTTATAAATACACACATAT
i colAng1.NW_012115910v1       C 0 C 0

a score=55622.000000
s hg38.chr15_KI270851v1_alt        54554 15 +    263054 TACACATATCTATGT
s gorGor5.CYUI01000350v1           57424 15 -    142253 TACACATATCTATGT
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75920932 15 + 121039945 tacacatatctatat
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     58686 15 -     93100 TATACATATCtgtgt
i rheMac8.chrUn_NW_014998353v1 C 0 I 2
s macFas5.chr15                106286767 15 + 112612857 TACACATATCTATGT
i macFas5.chr15                C 0 I 2
s macNem1.NW_012012133v1        22664483 15 +  28977278 TACACATATCTATGT
i macNem1.NW_012012133v1       C 0 I 2
s cerAty1.NW_012000030v1         1934165 15 +   8072957 TACACATATCTATGT
i cerAty1.NW_012000030v1       C 0 I 2
s chlSab2.chr12                102649665 15 + 108555830 TACACATATCTATGT
i chlSab2.chr12                C 0 I 2
s manLeu1.NW_012105664v1         1295838 15 -   1339302 CACACATATCTATGT
i manLeu1.NW_012105664v1       C 0 I 2740
s colAng1.NW_012115910v1         6792907 15 -   6934359 TGTACATATCtgtgt
i colAng1.NW_012115910v1       C 0 C 0
e panPan2.chr9                  87038099 56 + 138149186 I
e panTro5.chr9                  65537451 56 + 116767853 I

a score=79538.000000
s hg38.chr15_KI270851v1_alt        54569 28 +    263054 GTGTATATGTGCATAGGTCTGTATACAC
s gorGor5.CYUI01000350v1           57439 28 -    142253 GTGTATATGTGCATAGGTCTGTATACAC
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75920947 28 + 121039945 gtgtatatgtgcatacatctgtatacac
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     58703 26 -     93100 gtatatgtgcacag--gtctgtatacgc
i rheMac8.chrUn_NW_014998353v1 I 2 I 87
s macFas5.chr15                106286784 28 + 112612857 GTATATGTGTGCAAATGTCTGTATCCCC
i macFas5.chr15                I 2 I 2
s macNem1.NW_012012133v1        22664500 28 +  28977278 GTATATGTGTGCAAATGTCTGTATCCCC
i macNem1.NW_012012133v1       I 2 I 2
s cerAty1.NW_012000030v1         1934182 28 +   8072957 GTATATGTGTGCACATGTCTGTATCTGC
i cerAty1.NW_012000030v1       I 2 I 2
s chlSab2.chr12                102649682 28 + 108555830 GTATATGTGTGCACATGTCTGTATCCGC
i chlSab2.chr12                I 2 I 2
s manLeu1.NW_012105664v1            5911 28 +   1339302 GTATATGTGTGCACATATCTGTATCCCC
i manLeu1.NW_012105664v1       n 2740 I 2
s colAng1.NW_012115910v1         6792922 28 -   6934359 gtgtatatgtgcacaggtctgtatgcgc
i colAng1.NW_012115910v1       C 0 I 10
e panPan2.chr9                  87038099 56 + 138149186 I
e panTro5.chr9                  65537451 56 + 116767853 I

a score=85150.000000
s hg38.chr15_KI270851v1_alt        54597 34 +    263054 ATACAGAC--ATGGGTGTGTTGTAACATCATTTGGT
s gorGor5.CYUI01000350v1           57467 34 -    142253 ATACAGAC--ATGGGTGTGTTGTAACATCATTTGGT
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75920975 36 + 121039945 atacagacatatGGGTGTGTTGTAACATCATTTAGT
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr15                106286814 34 + 112612857 ACATACAT--ATGTGTGTGTTGTAACATCATTCAAT
i macFas5.chr15                I 2 C 0
s macNem1.NW_012012133v1        22664530 34 +  28977278 ACATACAT--ATGTGTGTGTTGTAACATCATTCAAT
i macNem1.NW_012012133v1       I 2 C 0
s cerAty1.NW_012000030v1         1934212 34 +   8072957 ACATACAT--ATGTGTGTGTTGTAACATCATTCGAT
i cerAty1.NW_012000030v1       I 2 C 0
s chlSab2.chr12                102649712 34 + 108555830 ACATACAT--GTGTGTGTGTTGTAACATCATTCGAT
i chlSab2.chr12                I 2 C 0
s manLeu1.NW_012105664v1            5941 34 +   1339302 ACATACAT--ATGTGTGTGTTGTAACATCATTCAAT
i manLeu1.NW_012105664v1       I 2 C 0
s colAng1.NW_012115910v1         6792960 34 -   6934359 gtatatac--atgtgtgtgttgtAACATCATTGGAT
i colAng1.NW_012115910v1       I 10 I 36
e panPan2.chr9                  87038099 56 + 138149186 I
e panTro5.chr9                  65537451 56 + 116767853 I
e rheMac8.chrUn_NW_014998353v1     58729 87 -     93100 I

a score=70082.000000
s hg38.chr15_KI270851v1_alt        54631 38 +    263054 TAGTATCACTTGTCCTATTTTTTTTCTTGAATACTCCG
s gorGor5.CYUI01000350v1           57501 38 -    142253 TAGTATCACTCGTCCTATTTTTTTTCTGGAATACGCTG
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75921011 38 + 121039945 TAGTATCACCTCTCCTATTTTTTTTCTGGAATACACTG
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr15                106286848 37 + 112612857 TAATATCATCCATTCTA-TCTTTTGCTGGAATACACTG
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22664564 37 +  28977278 TAATATCATCCATTCTA-TCTTTTGCTGGAATACACTG
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1934246 37 +   8072957 TAATATCATCCATTCTA-TCTTTTGCTGGAATACACTG
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102649746 37 + 108555830 TAATATCATCCATTCTA-TCTTTTGCTGGAATACACTG
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1            5975 37 +   1339302 TAATATCATCCATTCTA-TCTTTTGCTGGAATACACTG
i manLeu1.NW_012105664v1       C 0 C 0
e panPan2.chr9                  87038099 56 + 138149186 I
e panTro5.chr9                  65537451 56 + 116767853 I
e colAng1.NW_012115910v1         6792994 36 -   6934359 I
e rheMac8.chrUn_NW_014998353v1     58729 87 -     93100 I

a score=263100.000000
s hg38.chr15_KI270851v1_alt        54669 79 +    263054 TTTTTATTATTCTACAGAGAAGGGCACAACGCAATTGGTCTCTAGACTT---GCCCAAGTAACT-TTCTCTCTCCAGCAGTTT
s gorGor5.CYUI01000350v1           57539 78 -    142253 TTTTTATTATTCTACAGAGAAGGGCACAACA-AATTGGTCTCTAGACTT---GCCCAAGTAACT-TTCTCTCTCCAGCAGTTT
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75921049 79 + 121039945 TTTTTATTATTCTACAGAGAAGGGCACATCACAGTTGGTCTCTAGACTT---GCCCAAGTAACT-TTCTCTCTCCAGCAGTTT
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     58816 80 -     93100 TTTCTGTTATTCTGCAGAGCAGGGTGCATCACAAGTGATCTCTGGACTT---GCTGAAGCAACTATTCTCTCTCCAGCAATTT
i rheMac8.chrUn_NW_014998353v1 I 87 C 0
s macFas5.chr15                106286885 83 + 112612857 TTTTTATTATTCTACAGAGCAGGGCACATCACAATTAATCTCTAGACTTGAAGCCCGAGTAACTATTCTCTCTCCAGCAGTTT
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22664601 83 +  28977278 TTTTTATTATTCTACAGAGCAGGGCACATCACAATTAATCTCTAGACTTGAAGCCCGAGTAACTATTCTCTCTCCAGCAGTTT
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1934283 83 +   8072957 TTTTTATTATTCTACAGAGCAGGGCACATCACAATTAATCTCTAGACTTGAAGCCTGAGTAactattctctctccagcaattt
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102649783 83 + 108555830 CTTTTATTATTGTACAGAGCAGGGCACATCACAATTAATCTCTAGACTTGAAGCCCGAGTAACTATTCTCTCTCCAGCAGTTT
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1            6012 83 +   1339302 TTTTTATTATTCTACAGAGCAGGGCACATCACAATTAATCTCTAGACTTGAAGCCCGAGTAACTATTCTCTCTCCAGCAGTTT
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6793030 80 -   6934359 CTTTTGTTATTCTGCAGAGCAGGGTGCATCACAAGAGATCTCTGGACTT---GCTGAAGCAACTATTCTCTCTCCAACAATTT
i colAng1.NW_012115910v1       I 36 C 0
e panPan2.chr9                  87038099 56 + 138149186 I
e panTro5.chr9                  65537451 56 + 116767853 I

a score=123739.000000
s hg38.chr15_KI270851v1_alt        54748 23 +    263054 CTGTCAGTTCTTGGGTTTGGAAA
s panTro5.chr9                  65537507 23 + 116767853 CTGCCAGTTCTTGGGTTTGGAAA
i panTro5.chr9                 I 56 C 0
s panPan2.chr9                  87038155 23 + 138149186 CTGCCAGTTCTTGGGTTTGGAAA
i panPan2.chr9                 I 56 C 0
s gorGor5.CYUI01000350v1           57617 23 -    142253 CTGTCAGTTCTTGGGTTTGGAAA
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75921128 23 + 121039945 CTGCTAGTTCTTGGGTTTGGAAA
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     58896 23 -     93100 CTGCCACTGCTTGGGTTTGGAAA
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macFas5.chr15                106286968 23 + 112612857 CTGCCAGTTCTTGGGTTTAGAAA
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22664684 23 +  28977278 CTGCCAGTTCTTGGGTTTAGAAA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1934366 23 +   8072957 ctgccagttcttgggtttggaaa
i cerAty1.NW_012000030v1       C 0 I 2634
s chlSab2.chr12                102649866 23 + 108555830 CTGCCAGTTATTGGGTTTAGAAA
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1            6095 23 +   1339302 CTGCCAGTTCTTGGGTTTGGAAA
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6793110 23 -   6934359 CTGCCACTGCTTTGGTTTGGAAA
i colAng1.NW_012115910v1       C 0 C 0

a score=1377505.000000
s hg38.chr15_KI270851v1_alt        54771 355 +    263054 TTTCCTTCCTGCTCACCT----CCACTGGCAGCGTGTTCACCTCACGTTAGG-CCCTCTGGTTC-------AATGCTCCAAAAGTGTGATGAGCATAAAGAGAATTTTCCTCTCAGGAAAACAATAATGGCTGGATCACTGATACACTATGGGTTCATAAAGAAAGGTGAGTCTATTTGATTTGTCTATTAACCTGGAAGAGCACATTGAACATT-TTTTCTTTTTTAGAATAAGTACACGTACACATTGATCTTTTACTGAAAATAAAAAAA---AATTAATAGATACATGTAAATAAGAACAaaggac-ttttatctagccctagatcccaataacttctttag--aactcttttcctaaaaggtttatagt
s panTro5.chr9                  65537530 358 + 116767853 TTTCCTTCCTGCTCACCTTAGGCCCCTGGCAGCATGTCCACCTCACCTAAGG-CCC-CTGGTTCCACTCCTAATGCTCCAAAAATGTGATGAGCGTAAAGAGAGTTTTCCTCTCAGGAAAACAATAATGGCTCGATCACTGATACACTATGGGTTCATAAAGAAAGATGAATCTATTTCATTTGTCTATTAACCTGGAAAAGCATATTGAATA-T-TTTTCTTTTTTAGAATAAGTACAGGTACACATTGATCTTTTACTGAAAATAGAAAAA--TCATTAAAAGGTACATG----TAAGAAGAaagtactttttatttag--ctagatcccaatga-tttttta---atctcttttcctaaaaggtttatggt
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87038178 358 + 138149186 TTTCCTTCCTGCTCACCTTAGGCCCCTGGCAGCATGTCCACCTCACCTAAGG-CCC-CTGGTTCCACTCCTAATGCTCCAAAAATGTGATGAGCATAAAGAGAGTTTTCCTCTCAGGAAAACAATAATGGCTCGATCACTGATACACTATGGGTTCATAAAGAAAGATGAATCTATTTCATTTGTCTATTAACCTGGAAAAGCATATTGAATA-T-TTTTCTTTTTTAGAATAAGTACAGGTACACATTGATCTTTTACTGAAAATAGAAAAA--TCATTAAAAGGTACATG----TAAGAAGAAAGTACTTTTTATTTAG--CTagatcccaatga-tttttta---atctcttttcctaaaaggtttatggt
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           57640 357 -    142253 TTTCCTTCCTGCTCACCT----CCACTGGCAGCGTGTTCACCTCACGTTAGG-CCCTCTGGTTC-------AATGCTCCAAAAGTGTGATGAGCATAAAGAGAATTTTCCTCTCAGGAAAACAATAATGGCTGGATCACTGATACGCTATGGGTTCATAAAGAAAAGTGAGTCTATTTGATTTGTCTATTAACCTGGAAGAGCACATTGAACATT-TTTTCTTTTTTAGAATAAGTACAGGTACACATTGATCTTTTACTGAAAATAAAAACA---CATTAAAAGATACATGTAAATAAGAACAaaggac-ttttatctagccctagatcccaataacttctttagaactctcttttcctaaaaggtttatagt
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75921151 343 + 121039945 TTTCCTTTCTGCTCACCT----CCACTGGCAGCGTGTTCACCTCACCTTAGG-GCCTCTGGTTC-------TGTGCTCCAAAA-TGTGATGAGCATACAGAGAATTTTCCTCTCAGGAAAACAATAGTGACTGGATCACTGATTCACTATGGGTTCATAAAGAAAGGTGA-------------GTCTATTAACCTGGAAGAGCACATTGAACATT-TTTTCTTTTTTAGAATAAGTACAGGTACACATTGATCTTTTACTGAAAATAAAAAAA---CATTAAAAGATACTTGTAAATAAGAACAaaggac-ttttatctagccctagatcccaataacttttttagaactctcttttcctaaaaggtttatagt
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     58919 359 -     93100 TTTCCTCCCTGCTCACCT----CCACTGACAGCATGTTCACCTCACCTAAGG-CCCTCTGGTTCTCCTCTTAATACTCCAAAAATGTGATAAGTGTAAAGAGAATTTTCCTCTCAGGAAAACAATAATGGCTAGATCAGTGATACACTATGGGTTCATAAAGAAA-GTGAGTCTATTTGATTTGTCTATTAACCTGGAAGAGCACATTGAATATT-TTTTCTTTTTTAGAATAAGTACAGGCACACATTGATCTTTTACTG-----AAAAAGAAAACATTTAAAGCTACATATAAATAAGAACaaaatac-ttttatttagccctagatctcaataatttttttagaac--tcttttcctaaaaggtttacagt
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macFas5.chr15                106286991 354 + 112612857 TTTCCTCCCTGCTCACCT----CCACTGGCAGCATGTCTATCTCACCTAAGG-CCCCCTGGTTCCACTCCTAATGCTCCGAAAATGTGATGAGCATAAAGAGAGTTTTCCTCTCAGGAAAACAATAATGGCTCGATCACTGA-----------TTCATAAAGAAAGGTTAATCTATTTCATTTGTCTATTAACCTGGAAAAGCATATTGAATA-T-TTTTCTTTTTTAGAATAAGTACAGGTACACATTGGTCTTTTACTGAAAATAAAAAAAAATCATTAAAAAGTATATATAAATAAGAACAaagtac-ttttatctagccctagatcccaataa-ttttttagaactgtcttttcctaaaaggtttatagt
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22664707 354 +  28977278 TTTCCTCCCTGCTCACCT----CCACTGGCAGCATGTCTATCTCACCTAAGG-CCCCCTGGTTCCACTCCTAATGCTCCGAAAATGTGATGAGCATAAAGAGAGTTTTCCTCTCAAGAAAACAATAATGGCTCGATCACTGA-----------TTCATAAAGAAAGGTTAATCTATTTCATTTGTCTATTAACCTGGAAAAGCATATTGAATA-T-TTTTCTTTTTTAGAATAAGTACAGGTACACATTGGTCTTTTACTGAAAATAAAAAAAAATCATTAAAAAGTACATATAAATAAGAACAaagtac-ttttatctagccctagatcccaataa-ttttttagaactgtcttttcctaaaaggtttatagt
i macNem1.NW_012012133v1       C 0 C 0
s chlSab2.chr12                102649889 351 + 108555830 TTTCCTCCCTGCTCACCT----CCACTGGCAGCATGTCTATCTCACCTAAGGCCCCCCTGGTTCCACTCCTAATGCTCCGAAAATGTGATGAGCATAAAGAGAGTTTTCCTCTCAGGAAAACAATAATGGCTCGATCACTGA-----------TTCATAAAGAAAGGTTAATCTATTTCATTTGTCTATTAACCTGGAAAAGCATATTGAATA-T-TTTTCTTTTTTAGAATAAGTACAGGTACGCATTGGTCTTTTACTGAAAATAAAAA-AAATCATTAAAAGGTACATA----TAAGAACAaagtac-ttttatctagccctagatcccaataatttttttagaactgtcttttcctaaaaggtttatagt
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1            6118 353 +   1339302 TTTCCTCCCTGCTTACCT----GCACTGGCAGCATGTCTATCTCACCTAAGG-CCCCCTGGTTCCACTCCTAATGCTCCGAAAATATGATGAGCATAAAGAGAGTTTTCCTCTCAGGAAAACAATAATGGCTCGATCACTGA-----------TTCATAAAGAAAGGTTAATCTATTTCATTTGTCTATTAACCTGGAAAAGCATATTGAATA-T-TTTTCTTTTTTAGAATAAGTACAGGTACGCATTGGTCTTTTACTGAAAATAAAAA-AAATCATTAAAAGGTACATATAAGTAAGAACAaagtac-ttttatctagccctagatcccaataa-ttttttagaactgtcttttcctaaaaggtttatagt
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6793133 357 -   6934359 TTTCCTCCCTGCTCACCT----CCACTGGCAGCACGTTCACCTCACCTAAGG-CCCTCTGGTTCCACTCTTAATGCTCCAAAAATGTGATGAGTGTAAAGGGAATTTTCCTCTCAGGGAAACAGTAATGGCTAGATCAGTGATACACTATGGGTTCATAAAGAAA-GTGAGTCTATTTGACTTGTCTATTAACCTGGAAGAGCACATTGAATA-TGTTTTCTTTTTTAGAATAAGTACAGG--CACATTAATCTTTTACTG-----AAAAAGAAAACATTTAAAGGTACATATAAATAAGAACAAAATAC-TTTTATGTAGCCCTAGATCCCAATACTTTTTTTAGAAC--TCTTTTCCTAAAAGGTTTACAGT
i colAng1.NW_012115910v1       C 0 I 48064
e cerAty1.NW_012000030v1         1934389 2634 +   8072957 I

a score=2986764.000000
s hg38.chr15_KI270851v1_alt        55126 832 +    263054 acaaccttttatatttaagtttgcaaaccatttctagttaattagtgtataaagtgcaaggtttacactgagattttgagcct----gtgtttattttctccagtaacatttgttaaaaagactattctttctctttcaattacttttgtaccgttgtcaaaaatgagaaatgagttgggcatatttacttgtgtcaatttctgagttcttcattctgttctgctgacctatgtgtccatctctccaccagtatcatgtgccttttcatataaacttaaaataggtttatctatatgcat--aaaaatatgtagctggtgttttgatatgactgtcattaagtctacccatcaatttgaagagagttgacatatttgctatcgtgagtcttccaaaccattaataaggtatgtttgaat---tttagttcttctctcaa----ttcatgcacattttgtaatttttgccatcttgattctgcatgtcttgtcagatttatgcctaagtattttctttagagcaattgtaaaggtatattcagtttccacacattcatttttagttcatagaaatatgatgaattttggaggatggatca-ttatcctgtgaacttgctaaa-----tattatttctacaagactt-tttttagtttctctgagactttacaaagacaatcgtgtaatctgcaatagaggccactttccttc-tttctcttttttttcaatcagtatgc----cttgtttcttgcccaattgtgccgactagaactttcggtgctctgtcaaatagcattgttgagagcaggtgtctctgccttgtttccaccctgaggggaaaaccattcattcttt
s panTro5.chr9                  65537888 840 + 116767853 aaaaccttttatatttaagtttgcaaaccatttcaagttaattagtgtataaggtgtgaagtttacactgagattttgagcctataaatgtttattttctctggtggcatttgattaaaagactatccttcctccttcaattgcttttgtacctttctcaa-------aaatgagttgggcatatttgcttcggtccatttctgagttctgtattctgttctgctgccctatgtgtccatctctccaccaatatcatgtgccttttcatataaacttaaaataagtt----tatgtgcat--aaaaaaatctagctggagttttgatatgaatgtcattaagtctacgcatcaatttaaagagaactgacatctttgctatcttgagtcttccaaaccattagtaaggtatgtttgaatttatttagctcttctctcaattctttcatgcaaattttgtaatttttgccatcttgatcctgcatatcttgtcagatttatgcctaagtattttctttagagcaattgtaaaggtattttcagtttccacacattcattgttagtttatagaaatatgatgaattttgtaggatggatcatttatcctgtgaacttgctaagtaacttattatttctacaagac-t-tttttagattcccggagacattacaaagacaatcatgtaatctgcaatagaggccgttttccttc-tttct-ttttttttcaatcagtatgccttacttgtttcttgcccaattatgctgactagaactttcggtgctctgttaaatagcagaggtgagagcagatgtctctgccttgtttccaccctgaggggaaaaccattcagtcttt
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87038536 840 + 138149186 aaaaccttttatatttaagtttgcaaaccatttcaagttaattagtgtataaggtgtgaagtttacactgagattttgagcctataaatgtttattttctccggtggcatttgattaaaagactatccttcctccttcaattgcttttgtacctttctcaa-------aaatgagttgggcatatttgcttcggtccatttctgagttctgtattctgttctgctgccctatgtgtccatctctccaccaatatcatgtgccttttcatataaacttaaaataagtt----tatgtgcat--aaaaaaatctagctggagttttgatatgaatgtcattaagtctacgcatcaatttaaagagaactgacatctttgctatcttgagtcttccaaaccattagtaaggtatgtttgaatttatttagctcttctctcaattctttcatgcaaattttgtaatttttgccatcttgatcctgcatatcttgtcagatttatgcctaagtattttctttagagcaattgtaaaggtattttcagtttccacacattcattgttagtttatagaaatatgatgaattttgtaggatggatcatttatcctgtgaacttgctaagtaacttattatttctacaagac-t-tttttagattcccggagacattacaaagacaatcatgtaatctgcaatagaggccgttttccttc-tttct-ttttttttcaatcagtatgccttacttgtttcttgcccaattgtgctgactagaactttcggtgctctgttaaatagcagaggtgagagcagatgtctctgccttgtttccaccctgaggggaaaaccattcagtcttt
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           57997 844 -    142253 acaaccttttatatttaagtttgcaaaccatttctagttaattagtgtataaagtgcaaggtttacactgagattttgagcct----gtgtttattttctccagtaacatttgttaaaaagactattctttctctttcaattacttttgtaccattgtcaaaaatgagaaatgagttgggcatatttacttgtgtcaatctctgagttcttcattctgttctgctgacctatgtgtccatctctccaccagtatcatgtgccttttcatataaacttaaaataggtttatctatatgcat--aaaaatatgtagctggggttttgatatgactgtcattaagtctacccatcaatttgaagagagttgacatatttgctatcttgagtcttccaaaccattaataaggtatgtttgaatttatttagttcttctctcaattctttcatgcacattttgtaatttttgccatcttgattc-gcatgtcttgtcagatttatgcctaagtattttctttagagcaattgtaaaggtctattcagtttccacacattcattgttagttcatagaaatatgatgaattttggaggatggatcatttatcctgtgaacttgctaaata--ttattatttctacaagactt-tttttagtttctctgagactttacaaagacaatcgtgtaatctgcaatagaggccactttccttc-tttct-ttttttttcaatcagtatgccttacttgtttcttg-ccaattgtgctgactagaactttcagtgctctgtcaaatagcattgttgagagcaggtgtctctgccttgtttccaccctgaggggaaaaccattcattcttt
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75921494 844 + 121039945 ataaccttttatatttaagtttgcaaaccatttctagttaattagtgtatgaagtgcaaggtttacactgagattttgagcctataaatgtttattttctccagtaacatttgttaaaaagactattctttctctttcaattacttttgtaccattgtcaa-------aaatgagttgggcatatttacttgtgtcaatttctgagtccttcattctgttctacagacctatgtgtccatctctccaccagtatcatgtgccatttcatataaacttaaaataggtttatctatatgcat-aaaaaatatgtagctgcagttttgatatgactgtcattaagtctacccatcaatttgaagagagttgacatatttgctatcttgagtcttccaaaccattaataaggtatgtttgaatttatttagttcttctctcaattctttcaggcatattttctaatttttgccatcttgattctgcatgtcttgtcagatttatgcctaagtattttatttagagcaattgtaaaggtatattcagtttccacacattcattgttagttcatagaaatacgacgaattttggaggatggctcatttatcctgtgaacttgctaaata--ttattatttctacaagactt-tttttcgtttctctgagactttacaaagacaatcgtgtaatctgcaatagacgccactttccttc-tttct-ttttttttcaatcagtatgccttacttgtttcttgcccaattgtgccaactagaactttcagtgctctgtcaaatagcattgttgagagcagatatctctgccttgtttccaccctgaggggaaaaccattcattcttt
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     59278 845 -     93100 acaaccttttatatttaagtttgcaaaccatttcaagttagttattgtataaagtacaaagtttacactgagattttgagccaataaatgtttgttttctccagtaacattttttaagaagactattctttctccttcaattgcttttttaccattgtcaa-------aaatgagttggatata-ttaattgtgtcaatttctgagttcttttttctgttctgctgacttatgtctccatctctccaccaatatcatgtgccttttcctataaacttaaaataggtttatctatatgcataaaaaaatatgtagctggagtttttatatgactgtcgttaagtgtacccatcaatttgaggagagttgacatctttgctatcttgagtcttccaaaccattaataatgtatgtttgaatttatttaattcttctctcaattctttcatgcacattttgtcatttttgccatcttgattctgcatgtcttgtcagatttttgcctaagtattttctttagagcaattgtaaaggtactttcagtttccacacattcattgttagttcatagaaatatgatgaattttggaggatggatcatttatcctgtgaacttgctaagta--ttattatttctacaagaa-tatttttagtttcactgagactttacaaatacaatagtgtaatgtgcaatagatgccactttccttctttctt-ttttttttctatcagtgtgctttgcttgtttgttgcccaattgtgctgcttagaacttttagcgctcagtcagatagcgttgttgagagcagaagtctctgccttgtttccaccctgaggggaaaaccattcattcttt
i rheMac8.chrUn_NW_014998353v1 C 0 I 2032
s macFas5.chr15                106287345 841 + 112612857 aaaatcttttatatttaagtttgcaaaccatttcaagttaattagtgtataaagtgtgaggtttatactgagattttgagtttataaatgtttatttgctccagtaacatttattaaaatgactatccttcctccttcaattgcttttgtaccattgtc-a-------aaatgagttgggcatatttgcttggatcagtttctgagttctttattctgttcagctgacttatgtgtccatctctccaccaatatcaTGtgccttttcatataaacttaaaataggtttatctatatgcgt-aaaaaatatgtggctggggttttgatatgaatgtcattaagtctacccatccatctgaagacagttgacatctttgctatcttgagtcttccaaaccattaataaggtatgtgtgaatttatttagttcttctctcaattctttcatgtacattttgtaatttttgccatcttgattctgcatgtcttgtcagatttatgcctaagtgttttctttagagcaattgtaaaggtattttcagtttccacacactcattgttagttcatagaaatatgatgaattttggaggatggatcatttatcctgtgaacttgctcaata--ttattatttctacaagac-t-tttttagtttctttgagacattacgaagacaatcgtgtcatctgtaatagaagccgctttctttc--tttt-ttttttttcagtcagtatgccttacttgtttgttgcccaattgtgctgactagaactttcggtgctctgtcaaacagcagtggtgagagcagacgtctctgccttgtttccaccctcaggggaaaaccattcagtcttt
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22665061 840 +  28977278 aaaatcttttatatttaagtttgcaaaccatttcaagttaattagtgtataaagtgtgaggtttatactgagattttgagcttataaatgtttatttgctccagtaacatttattaaaatgactatccttcctccttcaattgcttttgtaccattgtc-a-------aaatgagttgggcatatttgcttggatcagtttctgagttctttattctgttcagctgacttatgtgtccatctctccaccaatatcaTGtgccttttcatataaacttaaaataggtttatctatatgcgt-aaaaaatatgtggctggggttttgatatgaatgtcattaagtctacccatccatctgaagacagttgacatctttgctatcttgagtcttccaaaccattaataaggtatgtgtgaatttatttagttcttctctcaattctttcatgcacattttgtaatttttgccatcttgattctgcatgtcttgtcagatttatgcctaagtgttttctttagagcaattgtaaaggtattttcagtttccacacactcattgttagttcatagaaatatgatgaattttggaggatggatcatttatcctgtgaacttgctcaata--ttattatttctacaagac-t-tttttagtttctctgagacattacgaagacaatcgtgtcatctgtaatagaagccgctttccttc---ttt-ttttttttcagtcagtatgccttacttgtttgttgcccaattgtgctgactagaactttcggtgctctgtcaaacagcagtggtgagagcagacgtgtctgccttgtttccaccctcaggggaaaaccattcagtcttt
i macNem1.NW_012012133v1       C 0 C 0
s chlSab2.chr12                102650240 838 + 108555830 aaaatcttttatatttaagtttgcaaaccatttcaagttaattagtgtataaagtgtgaggtttatactgagattttgagcttataaatgtttatttgctccagtaacatttattaaaacgactatccttcctccttcaattgcttttgtaccattgtc-a-------aaatgagttgggcatatttgcttggatcagtttctgagttctttattctgttcggctgacttatgtgtccatctctccaccaatatcaTGtgccttttcatataaacttaaaataggtttatctatatgcgt-aaaaaatatgtggctggggttttgatatgaatgccattaagtctacccatccatctgaagacagttgacatctttgctatcttgagtcttccaaaccattaataaggtatgtgtgaatttatttagttcttctctcaattctttcatgcacattttgtaatttttgccatcttgattctgcatgtcttgtcagatttatgcctaagtgttttctttagagcaattgtaaaggtattttcagtttccacacactcattgtcagttcatagaaatatgatgaattttggaggatggatcatttatcctgtgaacttgctcaata--ttattatttctacaagac-t-tttttagtttctctgagacattacgaagacaattgtgtcatctgtaatagaagccgctttccttc-----t-ttttttttcagtcagtatgccttacttgtttgttgcccaattgtgctgactagaactttcggtgctctgtcaaatagcagaggtgagagcagatgtctctgccttgtttccaccctcaggggaaaaccattcagtcttt
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1            6471 838 +   1339302 aaaatcttttatatttaagtttgcaaaccatttcaagttaattagtgtataaagtgtgaggtttatactgagattttgagcttataaatgtttatttgctccagtaacatttattaaaacgactatccttcctccttcaattg-ttttgtaccattgtc-a-------aaatgagttgggcatatttgcttggatcagtttctgagttctttattctgttcagctgacttatgtgtccatctctccaccaatatcaTGtgccttttcatataaacttaaaataggtttatctatatgcgt-aaaaaatacgtggctggggttttgatatgaatgtcattaagtctacccatccatctgaagacagttgacatctttgctatcttgagtcttccaaaccattaataaggtatgtgtgaatttatttagttcttctctcaattctttcatgcacattttgtcatttttgccatcttgattctgcatgtcttgtcagatttatgcctaagtgttttctttagagcaattgtaaaggtattttcagtttccacacactcattgttagttcatagaaatatgatgaattttggaggatggatcatttatcctgtgaacttgctcaata--ttattatttctacaagac-t-tttttagtttctctgagacattacaaagacaatcgtgtcatctgtaatagaagccgctttccttc----tt-ttttttttcagtcagtatgccttacttgtttgttgcccaattgtgctaactagaactttcggtgctctgtcaaatagcagaggtgagagcagacgtctctgccttgtttccacccttaggggaaaaccattcagtcttt
i manLeu1.NW_012105664v1       C 0 C 0
e colAng1.NW_012115910v1         6793490 48064 -   6934359 I
e cerAty1.NW_012000030v1         1934389 2634 +   8072957 I

a score=663087.000000
s hg38.chr15_KI270851v1_alt        55958 247 +    263054 catcattaagcatgacatagctgtttgtttttgataaatactcttgataaagttcaggaagtttccttgtatttctaggtttctgaaagttttt-atcataaaactgtgctatattttggcaaatgctctttctgcatcaattgagataaGTAACGTACGTATTTTTGTATCGTGTTTCCGTGTTCAGGTTGATATTCCTTGTATTTTAATTGACACATGTACACAATTTATATTTAAGATAACTGTA
s panTro5.chr9                  65538728 238 + 116767853 tgccattatgtatcacatagctgctggtttttgataaatacacttgat---------gaagtttccttctatttgtaggtttctgaaagttttt-atcataaaactgtgctatactttggcaaatgctttttctacatcaattgacataaGTGGCATAcgtatttttgaatcatgtttctttgtccaggttgacattccttgtcttttaatcgacacatgttcacaatttatatttaagataactgta
i panTro5.chr9                 C 0 I 1628
s panPan2.chr9                  87039376 238 + 138149186 cgccattatgtatcacatagctgctggtttttgataaatacacttgat---------gaagtttccttctatttgtaggtttctgaaagttttt-atcataaaactgtgctatactttggcaaatgctttttctacatcaattgacataaGTGGCATACGTATTTttgaatcatgtttctttgtccaggttgacattccttgtcttttaatcgacacatgttcacaatttatatttaagataactgta
i panPan2.chr9                 C 0 I 1624
s gorGor5.CYUI01000350v1           58841 244 -    142253 catcattaagcatgacatagctgtttatttttgataaatactcttgataaagttcaggaagtttccttctatttgtaggtttctgaaagctttt-atcataaaac--tgctatattttggcaaatgctctttctgcatcaattgagataagtaacgtacgtatttttgt-tcGTGTTTCCGTGTCCAGGTTGATATTCCTTGTGTTTTAATTGACACATGTACACAATTTATATTTAAGATAACTGTA
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75922338 247 + 121039945 catcattaagcatgacatagctgtttgcttttgataaatactcttgataaagttcagtaagtttccttctatttctaggtttctgaaagttttt-atcataaaactgtgccatattttggcaaatgctctttctgcatcaattgagataagtaacgtacgtatttttgtatcatgtttctgtgTCCAGGTTGATATTCGTTGTATTTTAATTGACACATGTACATAATTTATATTTAAGATAACTGTA
i nomLeu3.chr6                 C 0 C 0
s macFas5.chr15                106288186 248 + 112612857 caccattaggtatgacatagctgttggtttttgataaatactcttgataaagttcaggaagtttccttctatttgtatgtttctggaagtttttaatcataaaactgtgctttattttggtagatgttttttctgcattaattgagatAGGTAGCATAcatatttttgaatcatgtttctttgtcccagttgatattccttgtgttttaattgacacgtgtacataatttatatttaagataactgta
i macFas5.chr15                C 0 I 1656
s macNem1.NW_012012133v1        22665901 248 +  28977278 caccattaagtatgacatagctgtttgtttttgataaatattcttgataaagttcaggaagtttccttctatttctatgtttctggaagtttttaatcataaaactgtgctttattttggtagatgttttttctgcattaattgagatAGGTAGCATAcatatttttgaatcatgtttctttgtcccagttgatattccttgtgttttaattgacacgtgtacataatttatatttaagataactgta
i macNem1.NW_012012133v1       C 0 I 1658
s chlSab2.chr12                102651078 243 + 108555830 caccattaggtatgacatagctgttggtttttgataaatactcttgataaagttcaggaagtttccttctatttctatgtttctggaagtttttaatcataaaactgtgctttattttggtagat-ttttttccgc----attgagataGGTAGCATAcatatttttgaatcatgtttctttgtcccagttgatatgccttgtgttttaattgacacgtgtacataatttatatttaagataactgta
i chlSab2.chr12                C 0 I 1667
s manLeu1.NW_012105664v1            7309 248 +   1339302 caccattaagtatgacatagctgtttgtttttgataaatattcttgataaagttcaggaagtttccttctatttctttgtttctggaagtttttaatcataaaactgtgctttattttggtagatgttttttctgcattaattgagatAGGTAGCATACGTATTTttgaatcatgtttctttgtcccagttgatattccttgtgttttaattgacacgtgtacataatttatatttaagataactgta
i manLeu1.NW_012105664v1       C 0 I 1664
e colAng1.NW_012115910v1         6793490 48064 -   6934359 I
e cerAty1.NW_012000030v1         1934389 2634 +   8072957 I
e rheMac8.chrUn_NW_014998353v1     60123 2032 -     93100 I

a score=73910.000000
s hg38.chr15_KI270851v1_alt        56205 300 +    263054 ggccgggcgcagtggctcaggcctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaacattagccgggtgtggtggcgggcgcctgtggtcccagatactcgggacactgaggcaggagaatggcgtgaacccgggaggtggaacttgcagtgagctgagatcgcgccactgcactccaggctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaa
s gorGor5.CYUI01000350v1           59085 296 -    142253 ggccgggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcaagaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaacattagccgggtgtggtggtgggcgcctgtggtcccagatactcgggaggctgaggcaggagaatggcgtgaacccaggaggtggaacttgcagtgagctgagatcgcgtcactgcactccaggctgggcgacagagcgagactccgtctc----aaaaaaaaaaaaaa
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75922585 294 + 121039945 ggctgggcgcggtggctcacgcatgtaatcccagcactttgagaggctgaggcaggtggatcaccaggtcagaagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaattagctgggcgtggtggtgggcgcctgtagtcccagctactcgggaggctga-gcaggagaatggtgtgaacccgggaggcagggcttgcagtgagccgagatcgcgccactgcactccagcctgggcaacagagtgagactccgtctc----aaaaaaaaaaaaa-
i nomLeu3.chr6                 C 0 C 0
e panPan2.chr9                  87039614 1624 + 138149186 I
e panTro5.chr9                  65538966 1628 + 116767853 I
e colAng1.NW_012115910v1         6793490 48064 -   6934359 I
e manLeu1.NW_012105664v1            7557 1664 +   1339302 I
e cerAty1.NW_012000030v1         1934389 2634 +   8072957 I
e macNem1.NW_012012133v1        22666149 1658 +  28977278 I
e rheMac8.chrUn_NW_014998353v1     60123 2032 -     93100 I
e chlSab2.chr12                102651321 1667 + 108555830 I
e macFas5.chr15                106288434 1656 + 112612857 I

a score=584.000000
s hg38.chr15_KI270851v1_alt        56505 3 +    263054 aTG
s gorGor5.CYUI01000350v1           59381 3 -    142253 aTG
i gorGor5.CYUI01000350v1       C 0 C 0
s macFas5.chr15                106290090 3 + 112612857 ata
i macFas5.chr15                I 1656 C 0
e nomLeu3.chr6                  75922879 0 + 121039945 C
e panPan2.chr9                  87039614 1624 + 138149186 I
e panTro5.chr9                  65538966 1628 + 116767853 I
e colAng1.NW_012115910v1         6793490 48064 -   6934359 I
e manLeu1.NW_012105664v1            7557 1664 +   1339302 I
e cerAty1.NW_012000030v1         1934389 2634 +   8072957 I
e macNem1.NW_012012133v1        22666149 1658 +  28977278 I
e rheMac8.chrUn_NW_014998353v1     60123 2032 -     93100 I
e chlSab2.chr12                102651321 1667 + 108555830 I

a score=254459.000000
s hg38.chr15_KI270851v1_alt        56508 60 +    263054 GAAATACCAGAATGCCACCTTCTTTTGCAATGTGGGAGACAGAAGATTTATctcccttct
s panTro5.chr9                  65540594 59 + 116767853 gaaatatcagaatgctaccttcttttgccaggtga-agagagaagatttacctccctgct
i panTro5.chr9                 I 1628 C 0
s panPan2.chr9                  87041238 59 + 138149186 gaaatatcagaatgctaccttcttttgccaggtga-agagagaagatttacctccctgct
i panPan2.chr9                 I 1624 C 0
s gorGor5.CYUI01000350v1           59384 60 -    142253 GAAATACCAGAATGCCACCTTCTTTTGCAATGTGGGAGACAGAAGATTTATctctcttct
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75922879 60 + 121039945 gaaaTACTAGAATGCCACCTTCTTTTGCAATGTGGGAGAGCGAAGATTTATCTCCCTTCT
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     62155 60 -     93100 GAAATACCAGAATGCCACCTTGTTTTGCAATGTGGGAGAGGGAAGATTTATCTCCGTTCC
i rheMac8.chrUn_NW_014998353v1 I 2032 C 0
s macFas5.chr15                106290093 60 + 112612857 gaaataccggaatgccaccttcttttgcaatgtggaagagagaagatttacctccctgct
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22667807 60 +  28977278 gaaataccggaatgccaccttcttttgcaatgtgggagagagaagatttacctccctgct
i macNem1.NW_012012133v1       I 1658 C 0
s chlSab2.chr12                102652988 60 + 108555830 gaaataccggaatgccaccttcttttgcaacgtgggagagagaagatttacctccctgct
i chlSab2.chr12                I 1667 C 0
s manLeu1.NW_012105664v1            9221 60 +   1339302 gaaataccagaatgccaccttcttttgcaatgtgggagagagaagatttaccttcctgct
i manLeu1.NW_012105664v1       I 1664 n 1664
s colAng1.NW_012115910v1         6841554 60 -   6934359 GAAATACCAGAATGCCACCTTCTTTTGCAATGTGGGAGAGAGAAGATTTATCTCCGTTCC
i colAng1.NW_012115910v1       I 48064 C 0
e cerAty1.NW_012000030v1         1934389 2634 +   8072957 I

a score=1087396.000000
s hg38.chr15_KI270851v1_alt        56568 228 +    263054 tggccccactgacaccatccggcaagggaatcagagcactgctgattccttccactctgtgtaagtgaagtggatcatcagctccacacttgatttcactgaactatggtgttc-gcagg--gggggtttccattgatgtttggctacactcaggtgggtattccttgctaggccattattttccaggttctttggctgagacagctggggttttattaggtttggttttg
s panTro5.chr9                  65540653 226 + 116767853 tggccccatggacaccatcaggcaagggaatccgagcgctgctgcttccttccactaggtggaagtgaagtggatcatcagctccgcacttgactccaatgaactatggtgttt-g--gg--ggttttttccattggtgtttggctggagtcaggtgggtatttcttgccaggccattattttccaggttctttggctgagacagctgggtttgtgttgggtttggttttg
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87041297 226 + 138149186 tggccccatggacaccatcaggcaagggaatccgagcgctgctgcttccttccactaggtggaagtgaagtggatcatcagctccgcacttgactccaatgaactatggtgttt-g--gg--ggttttttccattggtgtttggctggagtcaggtgggtatttcttgccaggccattattttccaggttctttggctgagacagctgggtttgtgttgggtttggttttg
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           59444 228 -    142253 tggccccactgacaccatccggcaagggaatcagagcactgctgattccttccactctgtgtaagtgaagtggatcatcagctccacacttgatttcactgaactatggtgttc-gcagg--ggggttttccactgatgtttggctacactcaggtgggtattccttgctaggccattattttccaggttctttggctgagacagctggggttttattaggtttggttttg
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75922939 230 + 121039945 TGGCCCCACTGACCCCATCAGGCAAGGGAATCAGAGCACTGCTGATTCTTTCCCTTCTGTGGAAGTGAAGTGGATCGTCAGCTCCACACTCGACTCCACTGAACTATGGTGTTT-GCGGGGTGGGGGATTCCATTGATATTTGGCTACACTCAGGTGGGTATTCcttgctaggccattattttccaggttcttttgctaagacagctggggttttattaggtttggttttg
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     62215 223 -     93100 TGTCCCCACTGACACCATCAGGCAAGGGAATCAGAGCACTGCTGCATTCTTCCACTCC--GGAAGTGAAGTGGATCATCAGCTCCACACTGGACTCCACTGAACTATGATGTTT----GG--GGgtttttccactgatgtttggctacagtcaggtgggtattccctgctatgccattattgtccaggttctttggctgagaaagctggtgttttgttaggtttggttttg
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macFas5.chr15                106290153 224 + 112612857 tggccccccggacaccatcaggcaagggaatcagagcactgctgccgccttccactccgtggcagtgaagtggatcatcagccccacactggactccactgaactctggtgttt-g--gg--ggg--tttccatagatgtttggctacagtcaggtgggtattccttgctaggccattattttccaggttctttggctgagacaactgggtttttgttaggtttggttttg
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22667867 223 +  28977278 tggccccccggacaccatcaggcaagggaatcagagcactgctgccgccttccactccgtggaagtgaagtggatcatcagccccacactggactccactgaactctggtgttt----gg--ggg--tttccatagatgtttggctacagtcaggtgggcattccttgctaggccattattttccaggttctttggctgagacaactgggtttttgtcaggtttggttttg
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1937023 226 +   8072957 TGGCCCCCCGGACACCATCAGGCAAGGGAGTCAGAGCGCTGCTGCTGCCTTCCACTCCGTGGCAGTGAAGTGGATCATCAGCCCCACACTGGACTCCACTAACCTATGGTGTTT-G--GG--GGGTTTTTCCATTGGTGTGTGGCTGGTGTCAGGTGGGCATTTCTTGCCAGGCCATTCTTTTCCATGTTCTTTGGTTAAAAGAGTTAGGATTTTGTTGGGTTTGGTTTTG
i cerAty1.NW_012000030v1       I 2634 I 21
s chlSab2.chr12                102653048 227 + 108555830 tggccccccggacactatcaggcaagggaatcagagcactgctgctgccttccagtccgtggaagtgaagtggatcatcagccccacgctggactccactgaactctggtgtttgg--gg--gggggtttccatagatgtttggctacagtcaagtgggtattccttgctaggacattaatttccaggttctttggctgagacaactgggtttttgttaggtttggttttg
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1298593 226 -   1339302 TGGCCCCCCGGACACCATCAGGCAAGGGAGTCAGAGTGCTGCTGCTGCCTTCCACTCCGTGGCAGTGAAGTGGATCATCAGCTCCACACTGGACTCCACTAACCTATGGTGTTT-G--GG--GGgtttttccattggtgtgtggctggtgtcaggtgggcatttcttgccaggccattcttttccatgttctttggttaaaagagttaggattttgttgggtttggttttg
i manLeu1.NW_012105664v1       I 2740 I 19
s colAng1.NW_012115910v1         6841614 225 -   6934359 TGTCTCCACTGATACCATCAGACAAGGGAATCAGAGCACTGCTGCTTCCTTCCACTCCATGGAAGTGAAGTGGATCATCAGCTCCACACTGGACTCCACTGAACTCTGATGTTT----GG--GGGTTTTTCCACTGATGGTTGGCTACAGTCAGGTGGGTATTCcctgctatgccattattttccaggttctttggctgagaaagctggtgttttgttaggtttggttttg
i colAng1.NW_012115910v1       C 0 C 0

a score=17296.000000
s hg38.chr15_KI270851v1_alt        56796 6 +    263054 ttgggt
s panTro5.chr9                  65540879 6 + 116767853 ctgggt
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87041523 6 + 138149186 ctgggt
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           59672 6 -    142253 ttgggt
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75923169 6 + 121039945 ttggct
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     62438 6 -     93100 ttgggt
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macFas5.chr15                106290377 6 + 112612857 ttgtgt
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22668090 6 +  28977278 ttgtgt
i macNem1.NW_012012133v1       C 0 C 0
s chlSab2.chr12                102653275 6 + 108555830 ttgtgt
i chlSab2.chr12                C 0 C 0
s colAng1.NW_012115910v1         6841839 6 -   6934359 ttgggt
i colAng1.NW_012115910v1       C 0 C 0
e manLeu1.NW_012105664v1         1298819 19 -   1339302 I
e cerAty1.NW_012000030v1         1937249 21 +   8072957 I

a score=5500.000000
s hg38.chr15_KI270851v1_alt        56802 1 +    263054 g
s panTro5.chr9                  65540885 1 + 116767853 g
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87041529 1 + 138149186 g
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           59678 1 -    142253 g
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75923175 1 + 121039945 g
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     62444 1 -     93100 g
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macFas5.chr15                106290383 1 + 112612857 g
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22668096 1 +  28977278 g
i macNem1.NW_012012133v1       C 0 C 0
s chlSab2.chr12                102653281 1 + 108555830 g
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1298838 1 -   1339302 g
i manLeu1.NW_012105664v1       I 19 C 0
s colAng1.NW_012115910v1         6841845 1 -   6934359 g
i colAng1.NW_012115910v1       C 0 C 0
e cerAty1.NW_012000030v1         1937249 21 +   8072957 I

a score=1311497.000000
s hg38.chr15_KI270851v1_alt        56803 243 +    263054 tggtttctggttggaggcttctgcagcactctctccagggcagatgagaagaacaggagacccaaggaacataccactgtgtcattccCCAGGGAGTCTGTCTTCCTTATTATATTTTTCCAACACTTCCCATGCTCCTTTGTTGTTTTATGTGCAGACTTTCATTTAGAACACAAAGGATGTGATAGTAATGAGGCTTCTCCAACTGGGCTGAAAACACATGTGTTTTTGTCTTAAAATCAT
s panTro5.chr9                  65540886 243 + 116767853 tggtttctggttggaggcttctgcagcactctcttcagggcagatgagaagaataagaaacccaaggaatgtaccactgtgtcactccccagggagtctgtcatccttattatacttttccaacatttcccatgctcgtttgttgttttatgtgcagggtttCAGTTAGAACACAAAGGATGTGATAGTAATGAGGCTTCTCCAACTGGGCTGAAAACAGATGTGTTTTTGTCTTAAAATCAT
i panTro5.chr9                 C 0 I 6
s panPan2.chr9                  87041530 243 + 138149186 tggtttctggttggaggcttctgcagcactctcttcagggcagatgagaagaataagaaacccaaggaatgtaccactgtgtcactccccagggagtctgtcatccttattatacttttccaacatttcccatgctcgtttgttgttttatgtgcagggtttCAGTTAGAACACAAAGGATGTGATAGTAATGAGGCTTCTCCAACTGGGCTGAAAACAGATGTGTTTTTGTCTTAAAATCAT
i panPan2.chr9                 C 0 I 6
s gorGor5.CYUI01000350v1           59679 242 -    142253 tggtttctggttggaggcttctgtagcactctctccagggcagatgagaagaacaggagacccaaggaacgtaccactgtgtcattccCCAGGGAGTCTGTCTTCCTTATTATA-TTTTCCAACACTTCCCATGCTCCTTTGTTGTTTTATGTGCAGACTTTCATTTAGAACACAAAGGATGTGATAGTAATGAGGCTTCTCCAACTGGGCTGAAAACAGATGTGTTTTTGTCTTAAAATCTT
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75923176 242 + 121039945 tgg-ttctggttggaggcttctgcagcactctctccggggcagatgagaagaacaggagacccaaggaacataccactgtgtcattccccaaggagtctgtcttccttattatacttttccaacacttcccatgctcatttGTTGTTTTATGTGCGGACTTTCATTTAGAACACAAAGGATGTGATAGTAATGAGGCTTCTCCAACTGGGCTGAAAACAGATGTGTTTTTGTCTTAAAATCAT
i nomLeu3.chr6                 C 0 I 2
s rheMac8.chrUn_NW_014998353v1     62445 236 -     93100 tggtttctggttggcggcttctgcaccactctctccagggcagatgagaagtataggagacaca-------caccactgtgtaactccCCAGGGAGACTGACTTCCTTATTATACTTTTCCAACACTTCACATGCTCATTTGTTGCTGTATGTGCAGACTTTCATTTAGAACACAAAGGATGTGATAGTAATGAGGCTTCTCCAACTGGGCTGAAAACAGGTGTGTTTTTGTCTTAAAATCAT
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macFas5.chr15                106290384 243 + 112612857 tggtttctggttggaggcttctgcagcattctccccagggcagatgagaagaataggaaacccaaggaatgtaccactgtgtcattccCCAGGGAGTCTGTCTTGCTTAGTATACTTTTCCAACATTTCCCGTGCTCATTTGTTGTTTTCTGTGCAGGGTTTCAGTTAGAACACAAAGGATGTGATAGTAATGAGGCTTCTCCAGCTGGGCTGAAAACAGATGTGTTCTTGTCTTAAAATCAT
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22668097 243 +  28977278 tggtttctggttgaaggcttctgcagcattctccccagggcagatgagaagaataggaaacccaaggaatgtaccactgtgtcattccCCAGGGAGTCTGTCTTGCTTAGTATACTTTTCCAACATTTACCATGCTCATTTGTTGTTTTCTGTGCAGGGTTTCAGTTAGAACACAAAGGATGTGATAGTAATGAGGCTTCTCCAGCTGGGCTGAAAACAGATGTGTTTTTGTCTTAAAATCAT
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1937270 243 +   8072957 TGGTTTCTGGTTGGAGGCTTCCGCAGCATTCTCCCCAGGGCAGATGAGAAGAATAGGAAACCCAAGGAATGTACCACTGTGTCATTCCCCAGGGAGTCTGGCTTGCTTAATATACTTTTCCAACATTTCCCGTGCTCATTTGTTGTTTTCTGTGCAGGGTTTCAGTTAGAACACAAAGGATGTGATAGTAATGAGGCTTCTCCAGCTGGGCTGAAAACAGATGTGTTTTTGTCTTAAAATCAT
i cerAty1.NW_012000030v1       I 21 C 0
s chlSab2.chr12                102653282 243 + 108555830 tggtttctggttggaggcttctgcagcattcgccccagggcagatgagaagaataggaaacccaaggaatgtaccactgtgtcattccCCAGGGAGTCTGTCTTGCTTAATATACTTTTCCAGCGTTTCCCGTGCTCGTTTGTTGTTTTCTGTGCAGGGTTTCAGTTAGAACACAAAGGATGTGATAGTAATGAGGCTTCTCCAGCTGGGCTGAAAACAGATGTGTTTTTGTCTTAAAATCAT
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1298839 243 -   1339302 tggtttctggttggaggcttctgcagcattctccccagggcagatgagaagaataggaaacccagggaatgtaccactgtgtcattccccagggagtctggcttgcttaatacacttttccaacatttcccatgctcgtttgttgttttatgtgcagggtttCAGTTAGAACACAAAGGATGTGATAGTAATGAGGCTTCTCCAGCTGGGCTGAAAACAGATGTATTTTTGTCTTAAAATCAT
i manLeu1.NW_012105664v1       C 0 C 0
s colAng1.NW_012115910v1         6841846 236 -   6934359 tggtttctggttggaggcttctgcagcactctctccagggcagataagaagtataggagacaca-------taccactgtgtaattccccaggGAGTCTGACTTCCTTATTACACTTTTCCAACACTTTGCATTCTCATTTGTTGCTGTATGTGCAGACTTTCATTTAGAACACAAAGGATGTGATAGTAATGAGGCTTCTCCAACTGGGCTGAAAACAGATGTGTTTTTGTCTTAATATcat
i colAng1.NW_012115910v1       C 0 I 824

a score=289622.000000
s hg38.chr15_KI270851v1_alt        57046 65 +    263054 ------AAGTATTTTAAAATATACTTGAATAGGTTGGTGAGAATCCTGGGGAGAATTAACACATGATTGGG
s panTro5.chr9                  65541135 65 + 116767853 ------AAGTATTTTTAAAAATACTTGAATAGGTTGGTGAGAATTCTGGGGAGAATTAACACACTACTGGG
i panTro5.chr9                 I 6 C 0
s panPan2.chr9                  87041779 65 + 138149186 ------AAGTATTTTTAAAAATACTTGAATAGGTTGGTGAGAATTCTGGGGAGAATTAACACACTACTGGG
i panPan2.chr9                 I 6 C 0
s gorGor5.CYUI01000350v1           59921 63 -    142253 ------AAGTATTTTAAAATATACTTGAATAGGTTGGTGAGAATCCTGGGGAGAATTAACACG--ATTGGG
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75923420 65 + 121039945 ------GAGTATTTTAAAAAATACTTGAATAGGTTGGAGAGAATCCTGGGGAGAATTAACACATGATTGGG
i nomLeu3.chr6                 I 2 C 0
s rheMac8.chrUn_NW_014998353v1     62681 71 -     93100 AAGAACGAGTATTTAAAAAAATACTTGAATAGGTTGGTGAGAATCCTGGGGAGAACTAACACATGACTGGG
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macFas5.chr15                106290627 71 + 112612857 AAGAGCAAGTATTTTTTAAAATACTTGAATAGGTTGGTGAGAATTCTGGGGAGAATTAACACACCACTGGG
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22668340 71 +  28977278 AAGAGCAAGTATTTTTAAAAATACTTGAATAGGTTGGTGAGAATTCTGGGGAGAATTAACACACCACTGGG
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1937513 71 +   8072957 AAGAGCAAGAATTTTTTAAAATACTTGAATAGGTTGGTGAGAATTCTGGGGAGAATTAACACACCACTGGG
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102653525 71 + 108555830 AAGAGCAAGTATTTTTAAAAATACTTGAATAGGTTGGTGAGAATTCTGGGGAGAATTAACACACCACTGGG
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1299082 71 -   1339302 AAGAGCAAGAATTTTTTAAAATACTTGAATAGGTTGGTGAGAATTCTGGGGAGAATTAACACACCACTGGG
i manLeu1.NW_012105664v1       C 0 C 0
e colAng1.NW_012115910v1         6842082 824 -   6934359 I

a score=1198267.000000
s hg38.chr15_KI270851v1_alt        57111 265 +    263054 AAAAAAA----AAAGAAACA----TTCTCAACACTACAAGAAAAAGTCATTTCATAacagtaaaaactctagctcacattatctgcaacttacttacttattttttcta-----------------gcctggtgtcaaaattatcatttgcccctgtgataaacaaaattaccaaccaaagtggagtgtttctatgcagcttgtttggtcttaaccttagagtatccaatcaaaataccattttccaaagtgtctttgatcagtttctttttcctcttggaatcctctga
s panTro5.chr9                  65541200 249 + 116767853 -----------AAAGAAACAT---TTCTCAATGCTGCAAGAAAAAGTCACTCCAcaacagtgacaactccagctcacatgacctacaactgacttactcatttgttctc-----------------acctagtgtcaggattatcatttgcccctgtgataaacaaaattaccaac-----tagagtgtttctataaagtttgttttgtcttagtcttagagtatccaatcaaa-----attttataaagtgtctttaatcagtttctttttcctccTAAAATATTCTGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr9                  87041844 243 + 138149186 -----------AAAGAAACAT---TTCTCAATGCTGCAAGAAAAAGTCACTCCAcaacagtgacaactccagctcacatgacctacaactgacttactcatttgttctc-----------------acctagtgtcagaattatcatttgcccctgtgataaacaaaattaccaac-----tagagtgtttctataaagtttgttttgt------cttagagtatccaatcaaa-----attttataaagtgtctttaatcagtttctttttcctccTAAAATATTCTGA
i panPan2.chr9                 C 0 C 0
s gorGor5.CYUI01000350v1           59984 264 -    142253 -AAAAAA----AAAGAAACA----TTCTCAACACTACAAGAAAAAGTCATTTCATAacagtaaaaactcgagctcacattatctgcaacttacttacttattttttcta-----------------gcctggtgtcaaaattatcatttgcccctgtgataaacaaaattaccaaccaaagtggagtgtttctatgcagcttgttcggtcttaaccttagagtatccaatcaaaataccattttccaaagtgtctttgatcagtttctttttcctcttggaatcctctga
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75923485 261 + 121039945 ----AAA----AAAAAAACA----TTCTCAACTCTACAAGAAAAAGTCATTTCATaacagtaaaaactctagctcacattatctgcaacttacttacttatttgttcca-----------------gccggatgtcaaaattatcatttgcccctgtgataaacaaaattaccaaccgaagtggagtgtttctacgcagcttgtttggtcttaactttaaagtatccaatcaaaataccattttccaaagtgtctttgatcagtttctttttcctcctggaatcctctga
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     62752 262 -     93100 -----------GAAAAAAAACACATTTTCAACACTACAAGAAAAAGTCATTTCATaacagtaaaaattccagctcacgttatctacaacttacttactcatttattcta-----------------gcctggtgtcagaattatcatttgtccctgtgataaacaaaattactagccaaaggggagtgtttctatgcagcttgtttggtcttaaccttagagtagccaatcaaaatacaatttttcaaagtgtctttgatcagtttctttttcttccTGGAAACCTCAGA
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macFas5.chr15                106290698 255 + 112612857 -----------AAAGAAACAT---TTCTCAACACTGCAAGAAAAAGtcattccacagcagtgacaactccagctcacataatctacaactgacttactcatttgttctc-----------------acctagtgtcagaattatcatttgtccctgtgat----aaaattaccaaccaaagtggagtgtttctatgcagcttgtttggtcttaaccttagagaatccaatcaaaataccattttccaaagtgtctttgatcagtttctttttcctccTGGAACCCTCTGA
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22668411 255 +  28977278 -----------AAAGAAACAT---TTCTCAACACTGCAAGAAAAAGTCAttccacagcagtgacaactccagctcacataatctacaactgacttactcatttgttctc-----------------acctagtgtcagaattatcatttgtccctgtgat----aaaattaccaaccaaagtggagtgtttctatgcagcttgtttggtcttaaccttagagaatccaatcaaaataccattttccaaagtgtctttgatcagtttctttttcctcctggaaccctctga
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1937584 248 +   8072957 -----------AAAGAAACAT---TTCACAACACTGCAAGAAAAAGtcattccacagcagtgacaactccagctcacataatctacaactgacttactcatttgttctc-----------------gcctagtgtcagaaatatcatttgcctccgtgataaacaaaattaccaactaaagtagagtgtttctataaagtttgttttgt------cttagagtatccaatcaaa-----attttctacagtgtctttaatcagtttctttttcctccTGAAATATTCTGA
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                102653596 272 + 108555830 -----------AAAGAAACCT---TTCTCAACACTGCAAGAAAAAGtcattccacaccagtgacaactccagctcacataatctacaacagacttactcatttgttctcatctagtgtcagaattaacctagtgtcagaattataatttgtccctgtgat----aaaattaccaaccaaagtggagtgtttctatgcagcttgtttggtcttaaccttagagaatccaatcaaaataccattttccaaagtgtctttgatcagtttctttttcctcctggaatcctctga
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012105664v1         1299153 248 -   1339302 -----------AAAGAAACAT---TTCACAACACTGCAAGAAAAAGtcattccacagcagtgacaactccagctcacataatctacaactgacttactcatttgttctc-----------------gcctagtgtcagaaatatcatttgcctccgtgataaacaaaattaccaactaaagtagagtgtttctataaagtttgttttgt------cttagagtatccaatcaaa-----attttctacagtgtctttaatcagtttctttttcctccTGAAATACTCTGA
i manLeu1.NW_012105664v1       C 0 N 0
s colAng1.NW_012115910v1         6842906 265 -   6934359 ----AAAAAAAAAAAAAACAT---TT-TCAACACTACAAGAAAAAGTCATTTCATaacagtaaaaattccagctcacattatctacaacttacttactcatttattcta-----------------gcctggtgtcagaattatcatttgtccctgtgataaacaaaattactagccaaagtggagtgtttctatgcagcttgtttggtcttaaccttagagtagccaatcaaaacaccattttccaaagtgtctttgatcagtttctttttcctcctggaaacctcaga
i colAng1.NW_012115910v1       I 824 C 0

a score=593811.000000
s hg38.chr15_KI270851v1_alt        57376 173 +    263054 cttcctggtggatttttttattatt--atttttattttgcaaaaaataagaaagaggttttgtagtgtagcatttggtagggtttgagaaa-ccatagagacacgtgtccaccctccagcactgcacagaacagccgcatcaccctaaaattctgtgtgtgatgcctttgtgatca
s panTro5.chr9                  65541449 161 + 116767853 CATTCTGGTTTATTTT------------TTTTTAATTTGTGAAAGATAAAGATGAG--TTTGT-GTGTAGCATGTGGTAGGTTTTGAGAAACCCATAGAGACATGTGTCCACCACCCAACACTACACAGAAGACCTGCATCAGCCTAAAATTCTCTgtgtgatgcctttgtgatca
i panTro5.chr9                 C 0 N 0
s panPan2.chr9                  87042087 161 + 138149186 CATTCTGGTTTATTTT------------TTTTTAATTTGTGAAAGATAAAGATGAG--TTTGT-GTGTAGCATGTGGTAGGTTTTGAGAAACCCATAGAGACATGTGTCCACCACCCAACACTACACAGAAGACCTGCATCAGCCTAAAATTCTCTGTGTGATGTCTTTGTGATca
i panPan2.chr9                 C 0 N 0
s gorGor5.CYUI01000350v1           60248 172 -    142253 cttcctggtggatttttttattatt---tttttattttgcaaaaaataagaatgaggttttgtagtgtagcatttggtagagtttgagaaa-ccatagagacacgtgtccaccctccagcactgcacagaacagccgcatcaccctaaaattctctgtgtgatgcctttgtgatca
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75923746 176 + 121039945 cttcctggtggattttttttttttttttttttttttttgcaaaaaataagaacgaagttttgtagtgtagcatttggtaggttttgagaaacccatagagacatgtgtccaccctccagcactacacagaatagctgcatcaccctaaaattctctgtgtgatgcctttgtcatca
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     63014 167 -     93100 CTTCCTAGTGGA------TTTTTTT---TTTTtaatttgcagaaaataaggatgagatcttgtagtgtaggatttagtaggttttgagaagcccacagagacatgtgtccaccatccagcactacagagaacagctgaatcaccctaaaattctctgtgtgatgcctttgtgatca
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macFas5.chr15                106290953 171 + 112612857 CTTCCTGGTGGAtttt-tttttttt---tttttAATTTGCAAAAAATAAGg-tgaggttttgtggtgtagcatttggtaggttttgagaaacccatagagacaggtgtccaccatccagcgctacacacaacagctgcatcaccctaaaattctctgtgtgatgcgtttgtgatcc
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22668666 170 +  28977278 cttcctggtgga-ttt-tttttttt---tttttaatttgcaaaaaataagg-tgaggttttgtggtgtagcatttggtaggttttgagaaacccatagagacaggtgtccaccatccagcgctacacacaacagctgcatcaccctaaaattctctgtgtgatgcgtttgtgatcg
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         1937832 166 +   8072957 TATTATGGTTGA-------TGTTTT---TCTTTAATTTGCAAAAAATAAAGGTGAGTTTGTGTGGTGTAGCTTGTGGTAGGTTTTGAGAAACCCATAGAGACATGTGTCTACTGCCCAGCACTACATAGAGCAGCTGCATCAGCCTAAATTTCTCTgtgtgatgcctttgtgatca
i cerAty1.NW_012000030v1       C 0 N 0
s chlSab2.chr12                102653868 161 + 108555830 gttcctggtgga------------t---tttttattttgcaaaaaataaggatgaggttttgtggtgtagcgtttggtaggttttgagaaacccatagagacaggtgtccaccatccagcactacaaacaaaagctgcatcaccctaaaattctctgtgtgatgcgtttgtgatca
i chlSab2.chr12                C 0 C 0
s colAng1.NW_012115910v1         6843171 161 -   6934359 cttcctagtgga----------ttg---tttttaatttgcaaaaaataaggatgagatcttgtagtgtaggatttagtaggttttgagaaacccacagagac--gtgtccaccatccagcactacacagaacagctgaatcaccctaaaattctctgtgtgatgcctttgtgatca
i colAng1.NW_012115910v1       C 0 C 0

a score=974800.000000
s hg38.chr15_KI270851v1_alt        57549 452 +    263054 acccttccctttctcccaattgtgggcaaactctgatctgttttcttgacctataattttgccttctccggaatgttatacgaatgaaatcatacaatatgtagacatttggggctgacttctttcacacagcaaaacacatgtaagttcatctgtactgttgtgtaagtgaatagtctgttcctttgtattgctgaatagcagttgatggtattgatgcaatagtctatctgttcacctgttgtaagatgtgttggttaggctgggtgcggtggctcatgcctataatcccagcactttgggaggccaaggcgggcagatcatgaggtcaggagttcgagaccagcctggccaacatagtgaaaccctgtctctattaaaaatacaaaa-aattagccaggcatggtggtgggtgcctgtattcccagctacttgggaagctgaggcagaag
s gorGor5.CYUI01000350v1           60420 451 -    142253 acccttccctttctcccaattgtgggcaaactctgatctgttttcttgacctataattttgtcttctccagaatgttatacgaatgaaatcatacaatatgtagacatttggggctgacttctttcacatagcaaaacacatgtaagttcatctgtactgttgtgtaagtgaatagtctgttcctttgtattgctgaatagcagttgatggtattgatgcaatagtctatctgttcacctgttgtaagatgtgttggttaggctgggtgtggtggctcatgcctataatcccagcactttgggaggccaaggcgggcagatcatgaggtcaggagttcgagaccagcctggccaacatagtgaaaccctgtctctattaaaaatac-aaa-aattagccgggcatggtggtgggtgcctgtattcccagctacttgggaagctgaggcagaac
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75923922 450 + 121039945 acccttccctttctcccaattgtgggcaaa--ctgatctgttttctagacctacaattttgccttctccagaatgttatatgaatgaaatcacacaatatgtagacatttggggctgacttctttcacatagcaaaatacatctaagttcatccatactgctgtgtaagtgaatagtctgttcctttgtattgctgaatagcagttgatggtattgatgcaatagtccatctgttcacctattgtaagatgtgttggttaggccaggtgcggtggctcgtgcctataatcccagcactttgggaggccaaggcaggtggatcatgaggtcaggagttcaagaccagcctggccaacatagtgaaaccctgtctctattaaaaatacaaaa-aattagccaggcataatggtgggtgcctgtattcccaaccacttgggaagctgaggcagaag
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1     63181 440 -     93100 acccttccctttcttccaattgtgggaaacctctgatctgtttttttgacctataattttgctttctccagaatgctatacaaatgaaatcatacaatatgtagacatttggggctgacttctttcacata-cataatacatgtaagttcatctctactagtgtgtaagtcaatagtctgttcctttttatt-----------gttcatggtattgacgcaatagtctctctattcacctgtagaaagatgtcttggttaggctgggtgcagtggctgacatctgtgatcccagcactttggaa-actgagacgggcagatcatgaagtcaggagtttgagaccagcctggccaccatagtgaaaccccgtctctattaaaaatacaaaacaattagctgggtgtggtggtgggtacctgtattcccagctacttgggaagctgaggcagaat
i rheMac8.chrUn_NW_014998353v1 C 0 I 296
s macFas5.chr15                106291124 451 + 112612857 actcttccctttctcctaattgtgggcaacctctgatctgttttctcgacctataattttgccttctccggaatggtatacaaatgaagtcatacaatatgtagacatttggggctgacttctttcacatagcaaaatacatgtaaattcatctgtactgctgtgtaagtgaatagtctgttcctttttattactgaatagcagttgacggtattgacacaatagtctatctgttcacctgttgaaa-atgtcttggttaggccaggcgcagtggctcaggcctgtaatcccagcactttggaaggccaaggcaggtggatcacgaggtcaggagatcgagaccagcctggccaacatagtaaaaccccatctctactaaaaatacaaaa-aattagccaggcgtggtggtgggcgcctataataccagctacttgggaggccgaggcaggat
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22668836 451 +  28977278 actcttccctttctcctaattgtgggcaacctctgatctgttttctcgacctataattttgccttctccagaatgttatacaaatgaagtcatacaatatgtagacatttggggctgacttctttcacatagcaaaatacatgtaaattcatctgtactgccgtgtaagtgaatagtctgttcctttttattactgaatagcagttgacagtattgacacaatagtctatctgttcacctgttgaaa-atgtcttggttaggccaggcgcagtggctcaggcctgtaatcccagcactttggaaggccaaggcaggtggatcacgaggtcaggagatcgagaccagcctggccaacatagtaaaaccccatctctactaaaaatacaaaa-aattagccaggcgtggtggtgggcgcctataataccagctacttgggaggccgaggcaggat
i macNem1.NW_012012133v1       C 0 C 0
s chlSab2.chr12                102654029 450 + 108555830 actcttccctttctcctaattgtgggcaacctctgatctgttttctcgacc--taattttgccttctccagaatgttatacgaatgaagtcatacaatatgtagacatttggggctgacttctttcacatagcaaaatacatgtaaattcatctgtactgttgtgtaagtgaatagtctgttgctttttattgctgaatagcagttgatggtattgacacaatagtctatctgttcacctgttgaaaggtgtcttggttaggccaggcgcagtggctcaggcctgtaatcccagcactttggaaggccaaggcaggtggatcacgaggtcaggagttcgagaccagcctggccaacatagtaaaaccccatctctactaaaaatacaaaa-agctagccgggcgtggtggtgggcgcctgtaataccagctacttgggaggctgaggcaggaa
i chlSab2.chr12                C 0 C 0
s colAng1.NW_012115910v1         6843332 440 -   6934359 acccttccctttcttccaattgtgggcaacctctgatctgttttcttgacctataattttggtttctccagaatgctatacaaatgaaatcatacaatatgtagacatttggggctgacttctttcacata-cataatacatgtaagttcatctctactattgtgtaagtgaatagtctgttcctttttatt-----------gttcatggtattgatgcaatagtctatctattcacctgtagaaagatgtcttggttaggccgggcgcagtggctgacgtctgtgatcccagcactttggaa-gtcaagacgggcagatcatgaagtcaggagtttgacaccagcctggccaacatagtgaaaccccatctctattaaaaatataaaacaattagctgggtgtgatggtgggtacctgtattcccagctacttgggaagctgaggcagagt
i colAng1.NW_012115910v1       C 0 C 0

a score=733729.000000
s hg38.chr15_KI270851v1_alt        58001 335 +    263054 aattccttgaacctgggaggcggaggttgcagtgagccaagatcgtgacattg--------cactccagcctgggtgacagtgcgagactccgtctcaaaaaagaaaaaaaaaaa------aa----agaaagatgtcttggttgtttccaggttttggagattatgagtaaagctgctaaaacatttgcctagactacgggc--ttttatgtgaatttgttttcattacacattgataaatacataggagtggaatggctgaacctcacactggacatatgttttactttataaaaagctgccaaattatctcctaaagtgaccatgtcattttacattcccaacagtaatgaa
s gorGor5.CYUI01000350v1           60871 331 -    142253 aattccttgaacctgggaggcagaggttgcagtgagccaagatcgtgacattg--------cactccagcctgggtgacagtgcgagactccgtctcaaaaaag----aaaaaaa------aa----agaaagatgtcttggttgtttccaggttttggagattatgagtaaagctgctaaaacgtttgcctagactacgggc--ttttatgtgaatttgttttcattacacattgataaatatataggagtggaatggctgaacctcacactggacatatgttttactttataaaaagctgccaaattatctcctgaagtgaccatgtcattttacattcccaacagtaatgaa
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                  75924372 334 + 121039945 aattccttgaacctgggaggcggaggttgcagtgagccgagattgtgactttg--------cactccagcctgggtgacagtgtgagactccgtctcaaaaaag---aaaaaaaa------aa----agaaggatgtcttggttgttcccagattttggagattatgagtaaagctgctaaaacatttgcctagcctacaggcttttttatgtgaatttgttttcattacacattgataaatatataggagtggaatggctgaacctcacactggacatatgttttactttataaaaagctgccaaattatctcctaaagtgaccatgtcattttacattcccaacagtaatgaa
i nomLeu3.chr6                 C 0 I 48221
s rheMac8.chrUn_NW_014998353v1     63917 347 -     93100 aattccttgaacctgggaggcagaggttgcagtgagccgagatcgcgacattgcactcctacactccagccccggtgacagtgtgagactccatttcaaaaaag--aaaaaaaaaataaataa----ataaagacgtcctggttgtttccaggttttagagattatgagtaaagctgctaaaacatttgcccagcctacaggc--ttttatgtgaatttgttttcattatacattgataaatatataggaatggaatggttgaacctcacactggacatatgttttacttaatataaagttgctaaattatctcctaaagtgaccatgtcattttacattcccaacagtaatgaa
i rheMac8.chrUn_NW_014998353v1 I 296 C 0
s macFas5.chr15                106291575 333 + 112612857 aattgcttgaacccaggaggccgaggttgcagtaagccaagatcctgacattg--------cactccagcccgggtgacagtgtgagactccatctcaaaaaag--aaaaaaaaa------aa----agaaagatgtttccattgtttccaggatttagagattataattagagcagctaaaacatttgcctagcctataggc--tcttatgtgaacttgttttcattatacattaatacatgtataggaatggaatggctgaacctcacactagacatctgtttttctttataaaaagctgccaaattatttcctaaagtgaccgtgtcattttacattcccaacaataatgaa
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22669287 332 +  28977278 aattgcttgaacccaggaggccgaggttgcagtaagccaagatcctgacattg--------cactccagcccgggtgacagtgtgagactccatctcaaaaaag---aaaaaaaa------aa----agaaagatgtttccattgtttccaggatttagagattataattagagctgctaaaacatttgcctagcctacaggt--ttttatgtgaatttgttttcgttatacattgttaaatatataggaatggaatggctgaacctcacactagacgtctgtttttctttataaaaagctgccaaattatttcctaaagtgaccgtgtcattttacattcccaacaataatgaa
i macNem1.NW_012012133v1       C 0 C 0
s chlSab2.chr12                102654479 337 + 108555830 aattgcttgaacccaggaggcagaggttgcagtgagccaagatcctgacattg--------cactccagctcgggggacagtgtgagactccatcccaaaaaag--aaaaaaaaa------aaaaccagaaagatgtttccgttgtttccaggatttagagattataagtagagctgctaaaacatttgcctagcctataggc--tgttatgtgaacttgttttcattatacattgatacatgtataggaatggaatggctgaacctcacactagacatctgttttactttataaaaagctgccaaattatttcctaaagtgaccgtgtcattttacattcccaacagtaatgaa
i chlSab2.chr12                C 0 C 0
s colAng1.NW_012115910v1         6843772 342 -   6934359 aattccttgaacctgggaggcagaggttgcagtgagccgagatcacgacattgcactcctgcactacagcccgggtgacagtgtgagactccatttcaaaaaag--aaaaaaaaa------aaa---agaaagacgtcctggttgttttcaggttttagagattatgagtaaagctgctaaaacatttgcccagcctacaggc--ttttatgtgaatttgttttcattatacattcataaatatataggaatggaatggctgaacctcacactggacatatgttttacttaatataaagctgctaaattatctcctaaagtgaccatgtcattttacgttcccaacagtaatgaa
i colAng1.NW_012115910v1       C 0 C 0

a score=3884454.000000
s hg38.chr15_KI270851v1_alt        58336 2381 +    263054 agagaatctttgttgctacacatcttcaggagcatttgatattttaattttttatttctattctaatggcatgtagtagtatccca-ttgtagttatgttttgcattcccttatta----ataacaataaacatgttttcatatgcttatttgccatatgtctgtcttcttttgagatgtacgtgctcaagatttttgcttgttttaaattggattgtttgttttgtattgttgagttttaagggttctttattcattttggataaaagcttgtataagatacgtgactgatatggtctgactgtgtccccacccaaatctcattttgaattgtagttctcataatccctatgtgttgtgggagggacctggcagaaggtagtagaatcatggaggcaggttacccccatgctgctgttctca-gatagtgagtgagttctcataaaatctgatggttttatatagggcttttcttcctttgctaagcacttctctctcctgccaccatgtgaagaacaacatgtttgtttgccttctgccatgattgtaagtttcctgaggctttg-cc-agcctcatggaactgtgagtcaattaaacctctttcc-tggtaaattacccagcctcaggcagttctttatagcagcagcagaacagactaatacagtgactt----aatatttttccctgattgttttagctttttgctc-tgtaatgcttctttcacagaatgagcatttttagatataacaaagtctgctttttcattttttcttttatggatcatgtgtatggtgttttatctaaaaactcatcaatgaccccaaagtcatacctaatttcccctgttttatgatagtattttattgctgtat-------actttacacttttatatggtctatt--------------------------tcagtccacttttgtaaaaggtgtaaaatacgcatt-aagtttca-----ttttttttttacatggggagatcccattattacatccccatttacagaatagattatactttccccttttcctctgcatctttttcaaaatgcagttgaatatatttgtgtgggtctatttctggggtctgtattcattccattggtctacgtatctagtgttttaacaatattttaacaaaaccacaatattttgagaactgtagcataatagtaagccttgtaatcagtagtttatgtcctctaac-------tttttttcagaagtgttttgacaattctagttattttgttttccatgtaaattttagaatctccttggtgatatctacaaaaa--------aaaaaaaacttacaggaattttcattgttaatgaaggaactctacaagcagaaatggaaaagactggcatcttaactatattgagactctgaattcataaatatttcattcccctcttt----ttaaattttc---tatttattgcatttata-ttttgtagttttcagcatacagatcctgcacttctattgttacattaatacctaagcacttaatttttgcttctattttaaatagtaatttaattttttcaactgttaattactcacacataggaaaattattgacattctatattgacctttgataataaaacac--ttaatttcacgtatttgttttagaagcttttcataaatactgta-gactgtgtatataaagattagttttatcagcaaatagaggcagttttacttcttcctttgcaatatgtatgttatttatttcttattcctgtcttattgcactttgcaaattttctaatacaatattgaataggacctgtccccagtcttaaggaaa-aatcattcagtcatcaccatatagtatacagatataaacatatatcctaagttcttttattcctaattgtatg--agttttggtcagaaatagatgttggatttcatcgaatgctcttcctgcatctcttgagaag-aatattttaaaaata----ttctatagcagattacttggattggattttaatagtgaatcagccttgtttttattggacataatgaatcatcctacatggggagatgttcaatttgatgtcacaatattttgttgatattttttcatatatgtccatgactgatatttgtctatagtcttcttttctctccatatca--ttttttggttttggtgttattgtaatgctggccttataaaatgagttgggagtgctcccatctcatctattttctctaaaagattgtgtacagtcaaaattatttatccttcaaatatttgatagaaatcagtagtgaaagaacatgtgactagattttttggtaggttttatttacaaatgcaatttcttaattaatacaggactatttgttacctgtttcttcttcagtgagacttggtagtatgtgttgtgtctctagaggaatt--tattttt--tt
s gorGor5.CYUI01000350v1           61202 2374 -    142253 agagaatctttgttgctacacatcttcaggagcatttgatattttaattttttatttctattctaatggcatgtagtagtatccca-ttgtagttatgttttgcattcccttatta----ataacaataaacatgttttcatatgcttatttgccatatgtctgtcttcttttgagatgtacgagctcaagatttttgcttgttttaaattggactctttgttttgtgttgttgagttttaa-ggttctttattcattttggataaaagcttgtataagatatgtgactgatatggtctgactgtgtccccacccaaatctcattttgaattgtagttctcataatccctatgtgttgtgggagggacctggcagaaggtagtagaatcatggaggcaggttacccccatgctgctgttctca-gatagtgagtgagttctcgtaaaatctgatggttttatatagggcttctcttcctttgctaagcacttctctctcctgccaccatgtgaagaacaacatgtttgtttgccttctgccatgattgtaagtttcctgaggctttg-cc-agcctcatggaactgtgagtcaattaaacctctttcctttgtaaattacccagtctcaagcagttctttatagcagcagcagaacagactaatacagtgactt----aatatttttccc----tgttttagctttttgctcttgtaatgcttctttcacagaatgaggatttttagatataacaaagtctgctttttcattttttcttttatggatcatgtgtatggtgttttatctaaaaactcatcaatgaccccaaagtcatacctaatttcccctgttttatgatagtattttattgctgtat-------actttacacttttatatggtctatt--------------------------tcagtccacttttgtaaaaggtgtaaaatatgcatt-aagtttca-------ttttttttacatggggagatcccatttttacatccccatttacagaatagattatactttccccttttcctctgcatctttttcaaaatgcagttgaatatatttgtgtgggtctatttctggggtctgtattcattccattggtctacgtatctagtgttttaacaatattttaacaaaaccaaaatattttgagaactgtagcataatagtaagccttgtaatcagtagtttatgtcctctaac-------tttttttcagaagtgttttgacaattctagttattttgttttccatgtaaattttagaatatccttggtgatatctac-aaaa--------aaaaaaagcttacaggaattttcattgttaatgcaggaactctacaagcagaaatggaaaagactggcatcttaactatattgagactctgaattcataaatatttcattcccctcttt----ttaaattttc---tatttattgcatttata-ttttgtagttttcagcatacagatcctgcacttctattgttacattaatacctaagcacttaatttttgcttctattttaaatagtaatttaattttttcaactgttaattactcacacataggaaaattattgacattctatattgacttttgataataaaacac--ttaatttcacgtatttgttttagaagcttttcataaatactgtaggactgtgtatataaagattagttttatcagcaaatagaggcagttctacttcttcctttgcaatatgtatgttatttatttcttattc--gtcttattgcactttgcaaattttctaatacaatattgaataggacttgttcccagtcttaaggaaa-aatcattcagtcatcaccatatagtatacagatataaacatatatcctaagttcttttattcctaattttatg--agttttggtcagaaatagatgttggatttcatcaaatgctcttcctgcatctcttgagaag-aatatttttaaaata----ttctatagcagattacttggattggattttaatagtgaatcagccttgtttttattggacataatgaatcatcctacatggggagatgttcaatttgatgtcacaatattttgttgatattttttcatatatgtccatgactgatatttgtctatagttttcttttctctccatatca--ttttttggttttggtgttattgtaatgctggccttataaaatgagttgggagtgctcccatctcatctattttctctaaaagattgtgtacagtcaaaattatttatccttcaaatatttgatagaaatcagtagtgaaagaacatgtgactagattttttggtaggttttatttacaaatgcaatttcttaattaatacaggactatttgttacctgtttcttcttcagtgagatttggtagtatgtgttgtgtctctagaggaatt--tattttt--tt
i gorGor5.CYUI01000350v1       C 0 C 0
s rheMac8.chrUn_NW_014998353v1     64264 2382 -     93100 agagaatctttgttgctacacatcttcaggagcatttgatatttcaattttttatttccattctaatggcaggtagtagtatccca-ttgtagttacgatttgcattcccctattaattaataacaataaacatgttttcatatgtttatttgccacatgtctgtcttcttttgagatgtacatgctcaaaatttttgctcattttaaattggactgtttgttttgtattgttgagttttaagggttctttatttattctggatgaaagcttgtacaagatatgtgactgatatggtttggcggtgtccctgcccaaatctcattttgaattgtagttctcataatccctatgtgttgtgggagggacccagcagaaggtaatagaatcatggaggcaagttaccccgctgctgctgttctcatgatagtgagtgggttctcataaaatctgatggttttatatagggcttttcttcctttgcttggcacttctctctcctgccaccatgtgaagaacaacatgtttgcttgccttctgccctgattgtaagtttcctgaggcctcc-cccagccatctggaactgtgagtcaattaaacctctttcctttgtaaattacccagtctcaggcagttcttcatagcagcagctgaacagacta--acagtgactt-aaaaatatttttccctgattgttttagctttttgctcttgtaatggttctttcacagaatgagcattttcaaatatgataaagtgtattttttcattttctcttttatggatcatgtgtagggtattttatctagaaactcatcaatgaccccaaagtcatatctaatatcccctgttttatgatagtattttattgctgtat-------actttacacttttatatagtccact--------------------------tcagtccacatttgtaaaagttgtaaaatatgcatt-aaggttccttttttttttttttcacatggggagatcccattattacattcccatttagagaatagattatactttccccttttcctctgtgccattttcaaaatgcaatggaatatatttgtgtgggtctatttctggggtctctattcattccattggtctatgtgtctagtgttttaacaatatttaaacaaaaccacaatattttgagaactgtagcataatagtaagccttgtaatcagtagtgtatgtcctgtaactttgttttttttttcagaagtgctttgactattctagttcttttgctttcc----------------------------aactacca-----------acaaaaagcatgcagaaatgttcactgttaatgcaggaactctacaaatagaaatggaaaagactggcagcttaactatattgagactatgaattcataaatatttaattcccctc-ttttacttaaattttctcttatttattgcatttatatttttataattttcagcatatagatcctgcacttagattgttacattaatacctaagtacttaatttttgcttctattttaaacagtaatttagttttttcaactgttaatgcctaacacataggaaaattattgacattctatattgacctttgataataaaacactattcatttcacgtattt-ttatagaagctttttgtaaatactgtaggattgtgtatataaacatttgttttatgagcaaatagaggcagttttacttcttccttttcaatatgtatgttattaatttcttattgctgtcttgttgcactttgcaaatcttgtaatacaatattgaataggacttgttcccactcttaaggaaa-aatcatttcataagcatcatatagtatacagatttaaacatatatcctaagttcttttattcctaattttatgaaagttttggtcagaaatagatgttggatttcatcgaatgctctttctgcatctcttgagaagaaatgttttaaaaatagtctttgtatagcagattacttggattggattttaatagtgaatcagctttgtttttactggacataatgaatcatcctacatgggtagatgttcaatttgatatcacaatattttgttgtca-tttttcatatatgtccatgactgatacttatctatagttttcttttctctcaatatca--ttttttggttttggtgttattgtaatgctggccttataaaatgagttgggagtgctcccatctcatctattttctctaaaagtttgtgtactgtcaaaatcatgtactcttcaaatatttgatagaaat---cagtgaaagaacatgtgaatagattttttggtagattttatttacaaatgcaacttcttaattaatacaggactatttgttacc-gcttcttcttcagtcaggtttggcagtatgtgttgtgtctctagaggaattcctcttttt----
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s macFas5.chr15                106291908 2394 + 112612857 agagaatttttgttgctgcacatcttcaggaatacttgatattttaattttttatttccgttctaaaggcatgtagtagtatccca-ttatagttatgatttgcatttccctattaatttataacaataaacatgttttcatatgtttatttgccatatgtctgtc-----ttgagatgtatgtgctcaagatttttgctcattttaaattggattgtttgttttgtattgttgagttttaagagttctttatacattctggataaaagcttgtgtaagatacgtgactgatatggtttggctgtgtctccactcaaatctcattttgaaatgtagttcctatgatccctatgtgttgtgggagggacctggcagaaggtaatagaatcatggaggcaggttacccccatgctactgttctcatgatagtgagtgagttctcataaaatctgatggttttatatagggcttttcttcctttgctcagcacttctctctcctgccaccatgtgaagaacaacgtgtttgctcaccttctgtcatgattgtaaatttcctgaggccccc-ccaagccatgtggaactgtgagtcaattaaacctctttcctttataaattacccagtctcatgtagctctttatagtagggtgagaacagactaatacagtgactt-aataatattcttccctgtttgttttagttttttgctcttgtaatggttctttcatggaatgagcatttttaaatatgataaagtctacttttt-attttttcttttatggatcttgtgtatggtgttttatctaaaaactcatcaatgaccccaaagtcatacctaatttcccctgtttaatgatagtattttattactgtat-------actttacacttttatatggtctatt--------------------------tcagtccacttttgtaaaaggtgtaaaatatgcattaaaggttcc----ttttttcttaaacatggagagatcccattattacatccctatttatagaataggttatactttctccttttcctctgcacctttttcaaaatgcagttgaatatatttgtgtgagtctatttctggggtctccattcattctgttggtctatgtgtccagtgttttaacaatattttaacaaaaccacaatattttgagaactgtagcacaatagtaagccttgtaatcagtagtttatgt-ctctaactttg---cttttttcagaagtgctttgactattctagttattttgttttccatgtaaattttagaatctacttggtgatagctacaaaaaaagaaaagaaaaaaaaagtacaggaattttcattgttaatacaggaactctacagatagaaatggaaaagacgggcatcttaactatatggagactctgaattcataaatatttcattcccctctttttacttaaattttctcttatttattacatttata-ttttgtagttttcggcatacagatcctgcactt------------------cgaagtacttaatttttgcttctatttgaaatagtaatttaattttttcaactgttaattcctgacacatcggaaaattattgacattctttattcacctttgaaaatgaaacattgtcaatttcatgtatttgttatagaagctttttgtaaatactgtaggattgtgtatattaacatttgttttatcagcaaatagaggcagttttacttcttcctttgcaatatgtatgttatttgtttcttattcctgtcttactgcactttgcaaatcctctaatacaataccgaataggacttgtcccaagtcttaaggaaacagtcattcagtcatcaccatttagtatacagatttaaacatatatcctaagttcttttattcctaattttatgaaagttttggtcagaaatagatgttggattttattgagtgctctttctgcatctctcgagatg-gacattgtaaaaatagtctttctatagcagattacttggattggattttaatagtgaatcagtcttatttttattggacataatgaatcatcctacatgggtagatgttcaatttgatgtcacaatattttgttgatattttttcatatatgtccatgactgatatttgtctatagttttcttttctctcaatatca--attttttgttttggtgttagtgtaatgctggccttataaaatgaattaggagtcctctcatctcatttattttctctaaaagattgtgtacagtcaaaattttttattcttcaaatatttgatagaaatcagcagtgaaacaacatgtgactagattttttggtagattttatttacaaatgcaatttcttaattaatacaggacta-ttgttacctgtttcttcttcagtgaggtttggtagtatgtgttgtgtctctagagg-att--tttttta----
i macFas5.chr15                C 0 C 0
s macNem1.NW_012012133v1        22669619 2428 +  28977278 agagaatttttgttgctgcacatcttcaggaatacttgatattttaattttttatttccgttctaaaggcatgtagtagtatccca-ttatagttaggatttgcatttccctattaattgataacaataaacatgttttcatatgtttatttgccatatgtctgtc-----ttgagatgtatgtgctcaagatttttgctcattttaaattggattgtttgttttgtattgttgagttttaagagttctttatacattctggataaaagcttgtgtaagatacgtgactgatatggtttggctgtgtctccactcaaatctcattttgaaatgtagttcctatgatccctatgtgttgtgggagggacctggcagaaggtaatagaatcatggaggcaggttacccccatgctactgttctcatgatagtgagtgagttctcataaaatctgatggttttatatagggcttttcttcctttgcttggcacttctctctcctgccaccatgtgaagaacaacgtgtttgctcaccttctgtcatgactgtaaatttcctgaggccccc-ccaagccatgtggaactgtgagtcaattaaacctctttcctttataaattacccagtctcatgtagctctttatagtagggtgagaacagactaatacagtgactt-aataatattcttccctgtttgttttagttttttgctcttgtaatggttctttcatagaatgagcattttaaaatatgataaagtctacttttt-attttttcttttatggatcttgtgtatggtgttttatctaaaaactcatcaatgaccccaaagtcatacctaatttcccctgtttaatgatagtattttattactgtatactttacactttacacttttatatggtttattactgtacactttacacttttatatggccagtccacttttgtaaaaggtgtaaaatatgcattaaaggttcc----ttttttcttaaacatggagagatcccattattacatccctatttatagaataggttatactttctccttttcctctgcacctttttcaaaatgcagttgaatatatttgtgtgagtctatttctggggtctccattcattctgttggtctatgtgtccagtgttttaacaatatttaaacaaaaccacaatattttgagaactgtagcacaatagtaagccttgtaatcagtagtttatgt-ctctaactttg---cttttttcagaagtgctttgactattctagttattttgttttccatgtaaattttagaatctacttggtgatagctacaaaaaaagaaaagaaaaaaaaagtacaggaattttcattgttaatacaggaactctacagatagaaatggaaaagactggcatcttaactatatggagactctgaattcataaatatttcattcccctctttttacttaaattttctcttatttattacatttata-ttttgtagttttcggcatacagatcctgcactt------------------cgaagtacttaatttttgcttctatttgaaatagtaatttaattttttcaactgttaattcctgacacatcggaaaattattgacattctttattcacctttgaaaatgaaacattgtcaatttcatgtatttgttatagaagctttttgtaaatactgtaggattgtgtatattaacatttgttttatcagcaaatagaggcagttttacttcttcctttgcaatatgtatgttatttgtttcttattcctgtcttactgcactttgcaaatcctctaatacaataccgaataggacttgtcccaagtcttaaggaaacagtcattcagtcatcaccatttagtatacagatttaaacatatatcctaacttcttttattcctaattttataaaagttttggtcagaaatagatgttggattttattgagtgctctttctgcatctctcgagatg-gacattgtaaaaatagtctttctatagcagattacttggattggattttaatagtgaatcagtcttatttttattggacataatgaatcatcctacatgggtagatgttcaatttgatgtcacaatattttgttgatattttttcatatatgtccatgactgatatttgtctatagttttcttttctctcaatatca--tttttttgttttggtgttagtgtaatgctggccttataaaatgaattaggagtcctctcatctcatttattttctctaaaagattgtatacagtcaaaattttttattcttcaaatatttgatagaaatcagcagtgaaacaacatgtgactagattttttggtagattttatttacaaatgcaatttcttaattaatacaggacta-ttgttacctgtttcttcttcagtgaggtttggcagtatgtgttgtgtctctagaggaatt--tttttta----
i macNem1.NW_012012133v1       C 0 C 0
s chlSab2.chr12                102654816 2394 + 108555830 agagaatctttgttgctgcacatcttcaggaatacttgatattttaattttttatttccattctaaaggcatgtagtagtatccca-ttatagttatgatttgcattcccctattaatttataacaataaacatgttttcgtatgtttatttgccatatgtctgtc-----ttgagatgtatgtgctcaagatttttgctcattttaaattggattgtttgttttgtattgttgagttttaagagttctttatacattctggataaaagcttgtgtaagatacgtgactgatatggtttggctgtgtgtccacccaaatctcattttgaaatgtagttcctatgatccctatgtgttgtgggagggacctggcagaaggtaatagaatcatggaggcaggttacccccatgctgctgttctcatgatagtga----gttctcataaaatctgatggttttatatagggcttttcttcctttgctcagcacttctctctcctgccaccatgtgaagaacaacgtgtttgctcaccttctgtcatgattgtaaatttcctgaggcccctgccaagccatgtggaactgtgagtcaattaaacttctttcctttataaattgcccagtctcatgcagctctttatagtagggtgagaacagactaatacagtgacttaaataatattcttccctgtttgttttagttttttgctgttgtaatggttctttcatagaatgagcatttttaaatatgataaagtctacttttt-attttttcttttatggatcttgtgtatggtgttttatctaaaaactcatcaatgaccccaaagtcatacctaatttcccctgttttatgatagtattttattactgtat-------actttacactttcatatggtctatt--------------------------tcagtccacttttgtaaaaggtgtacaatatgcatt-aaggttcc----ttttcttttaaacatggagagatctcattattacatccccatttatagaacagattacactttctccttttcctctgcacctttttcaaaatgcagctgaatctatttgcgtgagtctatttctggggtctctattcattccgttggtctatgtgtccagtgttttaacaatattttaacaaaaccacaatattttgagaactgtagcacaatagtaagcctcataatcagtagtttatgt-ctctaactttg---cttttttcagaagtgctttgactattctagttattttgttttccatgtaaattttagaatctacttggtgatagctacaaaaaaagaaaagaaaaaaaaagtacaggaattttcattgttaatataagaactctacagatagaaatggaaaagactggcatcttaactatatggagactctgaattcataaatatttcattctcctctttttacttaaattttttcttatttattacatttata-ttttgtagttttcggcatacagatcctgcactt------------------tgaagtacttaatttttgcttctatttgaaatggtaatttaattttttcaactgttaattcctgacacatcggaaaattatagacattctttattcacctttgaaaatgaaacactgtcaatttcatgtatttgttatagaagctttttgtaaatactgtaggattgtgtatattaacatttgttttatcagcaaatagaggcaattttacttcttcctttgcaatatgtgtgttatttgtttcttattcctgtctcactgcactttgcaaatcctctaatacaataccgaataggacttatcccaactcttaaggaaacagtcattcagtcatcaccatttagtatacagatttaaacaaatatcctaagttattttattcttaattttatgaaagttttggtcagaaatagaagttggattttattgaatgctctttctgcatctctcaagatg-gacattgtaaaaatagtctttctatagcagattacttagattggattttaatagtgaatcagtcttgtttttattggacataatgaatcatcctacatgggtagatgttcaatttgatgtcacaatattttgttgatt-tttttcatatatgtccatgactgatatttgtctatagttttcttttctctcaatatcatttttttttgttttggtgttagtgtaatactggccttataaaatgaattaggagtcctctcatctcatttattttctctaaaagattgtgtacagtcaaaattttttattcttcaaatatttgatagaaatcagcagtgacacaacatgtgactagattttttggtagattttatttacaaatgcaatttcttaattaatgcaggactatttgttacctgtttcctcttcagtgaggtttggtagtatgtgttgtgtctctagaggaatt--ttttttt----
i chlSab2.chr12                C 0 N 0
s colAng1.NW_012115910v1         6844114 2374 -   6934359 agagaatatttgttgctacacatcttcaggagcatttgatatttcaattttttatttccattctaatggcaggtagtaatatcccatttgtagttatgatttgcattcccc---taattaataacaataaacatgttttca-atgtttatttgccatatgtctgtctccttttgagatgtatgtgctcagaatttttgctcgttttaaattggattgtttgttttgtattgttacattttaagggttctttattcattctggatgaaagcttgtgtaagatatgtgactgatatggtttggctgtgtccctgcccaaatctcattttgaattgtagttctcataatccctatgtgttgtgggagggacccagcagaaggtaatagaatcatggaggcaagttaccctgctgctgctgttctcatgatagtaagtgagttctcataaaatctgatggttttatatagggcttttcttcctttgcttggcacttctctctcctgccaccatgtgaagaacaacatgtttgcttgccttctgccctgattgtaagtttcctgaggcctcc-cccagccctctggaactgtgagtcaattaaacctctttcctttgtaaattacccagtctcaggcagttcttcatagcagcagctgaacaaattaacacagtgactt----aatatttttccctgattgttttagctttttgttcttgtaatggttctttcacagaatgagcattttcaaatatgacaaagtgtattttttcgttttctcttttatggatcatgtgtatggtattttatctaaaaactcatcaatgaccccaaagtcatatctaatatccc--gttttatgatagtattttattgctgtat-------actttacacttttatatagtctact--------------------------tcagttcacatttgtaaaagttgtaaaatatgcatt-aaagttcctttttttttttttttacacggggagatcccattattacattcccatttagagaatagattatactttccccttttcctctgtgcccttttcaaaatgcaatggaatatatttgtgtgggtctatttctggggtctctattcattccattggtctatgtgtctagtgttttaacaatatttaaacaaaaccacaatattttgataactgtagcataatagtaagccttgtaatcagtagtgtatgtcctgtaactttgttttttttttcagaagtgctttgactattctagttcttttgctttcc----------------------------aactacca-----------ataaaaagcatgcagaaatgttcactgttaatgcaggaactctacaaatagaaatggaaaagactggtagcttaactatattgagactatgaattcataaatatttaattcccctc-ttttacttaaattttctcttatttattgcatttata-ttttacaattttcaccatatagatcctgcacttatattgttacattaatacctaagtacttaatttttgcttct-ttttaaatagtaatttagttttttcaactgttaatgcctaacacataggaaaattattgacattctatattgacctttgataataaaacactattaatttcacgtattt-ttatagaagctttttgtaaatactgtaggattgtgtatataaacatttgttttatgagcaaagagaggcagttttacttcttccttttcaatatgtatgttacttatttcttattcctgtcttgttgcactttgcaaatcttgtaatacaatattgaataggacttgttcccattcttaaggaaa-aatcatttcataatcatcatataatatacagatttaaacatatatcctaagttcttttattcctaattttatgaaagttctggtcagaaatagatgttggatttcatcgaatgctctttctgcatctcttgagaagaaatgttttaaaaatagtctttgtatagcagattacttggattggattttaatagtgaatcagctttgtttttactggacataatgaatcatcctacatgggtagatgttcaatttgatgtcacaatattttgttgtca-tttttcatatatgtccatgactgatacttgtctatagttttcttttctctcaatatca--ttttttggttgtggtgttattgtaatgctggccttataaaatgagttgggagtgctcccatctcatctattttctctagaagattgtgtactgtcaaaatcatgtattcttcaaatatttgacagaaat---cagtgaaagaacatgtgaatagattttttggtagattttatttacaaatgcaatttcttaattaatacaggactatttgttacc-gtttcttcctcagtgaggtttggcagtgtgtgttgtgtctctagaggaatt--tctcttttt--
i colAng1.NW_012115910v1       C 0 C 0
e nomLeu3.chr6                  75924706 48221 + 121039945 I

a score=328303.000000
s hg38.chr15_KI270851v1_alt        60717 263 +    263054 catctcatctattagatttgtgtgcataaaattatttttagctttacttatttatggtatagtgtgtattgatagcttgtctttcagtcctgctgttagtaatctgta--gtctctcttctctttccctttttctctctttggttttgaatttcacttatttctgccctaattgttattagctcctttctttagttccttagatttaagttgttgttctttctctacgttcctaaagaagaatcttaggctactgaggtgagatt
s gorGor5.CYUI01000350v1           63576 263 -    142253 catctcatctattagatttgtgtgcataaaattatttttagctttacttatttatggtatagcgtgtattgatagcttgtctttcagtcctgctgttagtaatctgta--gtctctcttctctttccctttttctctctttggttttgaatttcacttatttctgccctaattgttattagctcctttctttagtttcttagatttaagttgttgttctttctctacgttcctaaagaagaatcttaggctactgaggtgagatt
i gorGor5.CYUI01000350v1       C 0 C 0
s rheMac8.chrUn_NW_014998353v1     66646 263 -     93100 cgtctcatctattagatttgtgtgtgtaaaattatttgtagcattacttatttatgctataatgtttattgatagcttgtctttcagtcctgatgttagtaatctgta--ctctctcttctctttccctttctttctctttggttttcaatttcacttatttctgccctaattgttattagttcctttctttagtttcttagatttaagctgttcttctttctctacgttcctaaagaagaatcttaggctactaaggtgaaatt
i rheMac8.chrUn_NW_014998353v1 C 0 I 3
s macFas5.chr15                106294302 265 + 112612857 aatctcatctgttagatttgtgtgtgtaaaattgtttgtagcattatttatttatggcatagtgtgtattgatagcttgtctttcagttctgctgttagtaatctgtactctctctcttccctttccctttctctctctttggttttcaatttcacttatttctgcccaaattgttattagctcctttctttagtttcttagatttaagttgttcttctttctctatgttcctaaagaagaatcttaggctactgcggtgagatt
i macFas5.chr15                C 0 I 3
s macNem1.NW_012012133v1        22672047 265 +  28977278 aatctcatctgttagatttgtgtgtgtaaaattgtttgtagcattatttatttatggcatagtgtgtattgatagcttgtctttcagttctgctgttagtaatctgtactctctctcttccctttccctttctctctctttggttttcaatttcacttatttctgcccaaattgttattagctcctttctttagtttcttagatttaagttgttcttctttctctatgttcctaaagaagaatcttaggctactgcggtgagatt
i macNem1.NW_012012133v1       C 0 N 0
s colAng1.NW_012115910v1         6846488 263 -   6934359 catctcatctattatatttgtgtgtgtaaaattatttgtagcattacttatttatgctataatgtgtattgatagcttgtctttcagtcctgctgttagtaatctgta--ctctctcttctctttccctttctctgtctttggttttcagtttcacttatttctgctctaattgttattagttcctttctttagtttcttagatttaagctgttcttctttctctacgtttctaaagaagaatcttaggctactgaggtgagatt
i colAng1.NW_012115910v1       C 0 I 3
e nomLeu3.chr6                  75924706 48221 + 121039945 I

a score=13250.000000
s hg38.chr15_KI270851v1_alt        60980 18 +    263054 actcttttcaaagaacca
s gorGor5.CYUI01000350v1           63839 18 -    142253 attcttttcaaagaacca
i gorGor5.CYUI01000350v1       C 0 C 0
s rheMac8.chrUn_NW_014998353v1     66912 18 -     93100 attcttttcaaagaacca
i rheMac8.chrUn_NW_014998353v1 I 3 C 0
s macFas5.chr15                106294570 18 + 112612857 attcttttctaatatcca
i macFas5.chr15                I 3 N 0
s colAng1.NW_012115910v1         6846754 18 -   6934359 attcttttcaaagaacta
i colAng1.NW_012115910v1       I 3 C 0
e nomLeu3.chr6                  75924706 48221 + 121039945 I

a score=57776.000000
s hg38.chr15_KI270851v1_alt       60998 114 +    263054 acttttagctacgtttatttcttctactgctttccaaccttctattttattgatttatgctctaatctttattatttctttacttctgctagcttcagatttagttttctctgg
s gorGor5.CYUI01000350v1          63857 114 -    142253 acttttagctatgtttatttcttctactgctttccaaccttctattttattgatttatgctctaatctttattatttctttacttctcctagcttcagatttagttttctctgg
i gorGor5.CYUI01000350v1       C 0 C 0
s rheMac8.chrUn_NW_014998353v1    66930 114 -     93100 acttttagctatgtttatttcttctactgcttttcaaccttctacttcactgatttatactctaatctttattatttctctacttccgctagcttcatattttgttttctctgg
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s colAng1.NW_012115910v1        6846772 114 -   6934359 acttttagctatgtttatttcttctactgcttttcaaccttctactttactgatttatactctaatctttattattcctttacttctgctagcttcatattttgttttctctgg
i colAng1.NW_012115910v1       C 0 C 0
e nomLeu3.chr6                 75924706 48221 + 121039945 I

a score=1207697.000000
s hg38.chr15_KI270851v1_alt       61112 1512 +    263054 tttttatactgccttttaggtgtagagtgaggttactgatttgagctttttttaaatgtagttgtttatgtccatacattttccttcaaactctactttcactgcagtcactaagttttggtatgttttgtttttat-ttgtcttaagatactttataatttcacttatgatttattctttcactggtagtttaagagtgtattgtttaatttctacatatttgtgaatttttcaggtttcattttttattta-----tgtttcctccattgtggttgtaaattatattttgtatgatttaaaacttttgtaaatgattaggacatatttttgtggacgaagatatgtcctatcctagagaaagttccatatccacttaaaaggaat-----gtatattctgctgtttttgggtggactgttctgtatatgtgtattagctctaaatggcttatactgttgttcaagtcttctatttctcatgaagcttctgtctggtttttctatccattaattaaaatgaggtattgaagtgtccaactactattatagaactgtgtgcttatcctttcaatcctgtTCATTttttttcagctttactgaggtatatttgagaaataaatattgtacatattcaaagtttacaatgtgatgtttctatctacatgcgcattttgaaatgattaccaaaatgaagtaaattaacatattaattacctcgcataatagttaccttttttgtgtgcatgcatgggataagaatacttaaCCATAACCCTAGTGACTGCAGAGTGGCCATTCCAGCTGCTCCAGGCTCCGGCAGAGGAGGAGCGGGGCGGGTGGCACCACCAGGGGGG-CCCTCAGGCCTGGCGCGCACGCATTTCGGAGGCTGCCCAGGCCAAGGTGCAGCTGCCCTCTGCCCTGTGTGTGCAGGTAGCAGCCGCCTGTCAACTCCCGAGCCCGGTCGCGCTGCCAGCGTCGCAGAACCGGGGTCAGATGTCCCGGCGGCTGCACAGGAGTGAGAACTGAGAACCTGCCGCTCAAAGCCATCACAGGTGACTGCGGAGTCCCCATGCCAGCAGCTCCTGT--CTCCCTGTGGTGGAAGAGCCGGGCGGGATGCGCGGCTTGGGGCTTCTCAGCCTGGGCGCCCTGGCGATCCGCAGGCCTCCCGGGCCAGGCCCCTCCAGCCCGCCTGGGCACCCAAGCTGCAGCCACCCTCTGTGTGCAGGCAGCAGCCTCTGGGGAACCTCTAAGCCCGCCTGCACTCGTAACATCTCAGAACC-AGGGACAGATGTCCCGGTGGCTAGAGCCAAGCCAGATGGTCTGCCCGATGGCGGCTACACAGGGGCGAGAACCTGCCACTTAATCCCATCCCCGGTGGCTGCGGAGGGCCCCTGGCCAGCGGTCCTGAGCTCTGGCAGAGGCGGGGGCAGGGCCTGGCGGGCTCTCAGGCTCGGTGTACTCGCGATCCAGAGGCCGCCCAGGCCATGTTCCACTGCCTGGACACCCAAGCTGTAGCCGCCC
s gorGor5.CYUI01000350v1          63971 1508 -    142253 tttttatactgccttttaggtatagagtgaggttactgatttgagctttttttaaatgtagttgtttatgtccatacattttccttcaaactctactttcactgcagtcactaagttttggtatgttttgtttctat-ttgtcttaagatactttataatttcacttatgatttattccttcactggtagtttaagagtgtattgtttaatttctacatatttgtgaatttttcaggtttcattttttatttatc---tgtttcctccattgtggttgtaaattatattttgtatgatttaaaacttttgtaaatgattaggacatatttttgtggacgaagatatggcctatcctagagaaagttccatatccacttaaaaagaat-----gtatattctgctgtttttgggtggactgttctgtatatgtgtattagctctaaatggcttatactgttgttcaagtcttctatttctcatgaagcttctgtctggtttttctatccattaattaaaatgaggtattgaagtgtccaactactattatagaactgtgtgtttatcctttcaatcctgtTCATTttttttcagctttactgaggtatatttgagaaataaatattgtacatattcaaggtttacaatgtgatgtttctatctacatgcacattttgaaatgattaccaaaatgaagtcaattaacatattaattacctcgcataatagttaccttttttgtgtgcatgcatgggataagaatacttaaCCATATCCCTAGTGACTGCAGAGTGGCCATTCCAGCTGCTCCAGGCTCCGGCAGAGGAGGAGCGGGGCGGGTGGCACCACCTGGGGGG-CCCTCAGGCCTGGCGCGCACGCATTTCGGAGGCTGCCCAGGCCAAGG------TGCCCTCTGCCCTGCGTGTGCAGGTAGCAGCCGCCTGTCAACTCCCGAGCCCGGTCGCGCTGCCAGCGTCGCAGAACCGGGGTCAGATGTTCCGGCGGCTGCACAGGAGTGAGAACTGAGAACCTGCCGCTCAAACCCATCGCAGGTGACTGCGGAGTCCCCATGCCAGCGGCTCCTGT--CTCCCTGTGGTGGAAGAGCCGGGCGGGATGCACGGCTTGGGGCTTCTCAGCCTGGGCGCTCTGGCGATCCGCAGGCCTCCCGGGCCATGCCCCTCCAGCCCGCCTGGGCACCCAAGCTGCAGCCACCGTCTGTGTGCAGGCAGCAGCCTCTGGGGAACCTCTAAGCCCGCCTGCACTCGTAACATCTCAGAACC-GGGGACAGATGTCCCGGTGGCTGCAGCCAAGCCAGATGCTCTGCCCGATGGCGGCTACACAGGGGCGAGAACCTGCCGCTTAATCCCATCCCCGGTGGCTGCGGAGGGCCCCTGGCCAGCGGTCCCGAGCTCTGGCAGAGGCGGGGGCAGGGCCTGGCGGGCTCTCAGGCTCGGTGTACTCGCGATCCAGAGGCCGCCCAGGCCATGTTCCACTGCCTGGACACCCAAGCTGTAGCCGCCC
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                 75972927 1515 + 121039945 tttttatactgcc-tttaggtatagggtgaggttactgccttgagattttttt-aatgtagt--gttatatccatacattttccttcaaactctactttcactgcagtcactaagttttggtatg-tttgtttttat-ttgtcttaagatactttataatttcacttgtgatttattctttcactggtagtttaagagtgtattgtttaatttctacatatttgtgaatttttcaggtttcatgttttatttatctgttgtttcctccattgtggttgtaaattatattttgtatgatttaaaacttttctaaatgattaggacatatttttgtggacgaagatatggcctatcctagagaaagttccatattcacttaaaaagaatgtatagtatattctgctg-ttttgggtggactgttctgtacatgtgtatcagctctacatggcttatactgttgttcaagtc-tctatttctcatgaagcttgtgtctggtttttctacccattaattaaaatgaggtattgaagtgtccaactactattgtagaactgtgtgtttatcctttcaatcctgttaa-tttttttcagctttactgaggtatatttgagaaataaatattgtacatattcaaggtttacaatgtgatgtttctatctacatgtacattctgaaatgattactaaaatgaagtcaattaacatattaattacctcccctaatagttaccttttttgtgtgcgtgcatgggataagaatacttaaCCATATCCCTAGTGACTGCAGAGTGGCCATTCCAGCTGCTCCAGGCTCCGGCAGAGGAGGAGC-GGGCGGGTGGCACCGCCAGGGGGG-CCCTCAGGCCTGGCGCGCACGCATTTCGGAGGCTGCCCAGGCCAAGATGCAGCTGCCCTCTGCCGTGTGTGTGCAGGCAGCAGCCGCCTTTCAACTCCCGAGCCCAGTCGCGCTGCCAGCGTCGCAAAGCCGGGGTCAGATGTCCCGACGGCTGCACAGGAGTGAGAACCGAGAACCTGCCGCTCAAACCCATCCCAGGTGACTGTGGAGTGCCCATGCCAGCGGCTCCTGTACCTCCCTGTGGTGGAAGAGCCGGGCGGGATGCACGGCTTAGGGGCTCTCAGCCTGGGCGCGCTGGCGATCCGCAGGCCTCCCGGGCCATGCCCCTCCAGCCCGCCTGGGCACCCAAGCTGCAGCCGCCCTCTGTGTGCAGGCAGCAGCCTCTGGGGAACCTCTAAGCCCGCCTGCACTCGTAACATCTCAGAACC-GGGGACAGATGTCCCGGTGGCTGCAGCCAAGCCAGATGGTCTGCCCGATGGCGGCTACACATGGGCAAGAACCTGCCGCTCAATCCCATCCCCGGTGGCTGCGGAGGGCCCCTGGCAGAAGGACCCGAGCTCTGGCAGAGGCGGGGGCAGGGCCTGGCGGGCTCTTAGGCTCGGTGCACTCGCGATCCAGAAGCCCCCCAGGCCATGTTCCACCGCCTGGACACCCAAGCTGCAGCCGCCC
i nomLeu3.chr6                 I 48221 M 261
s rheMac8.chrUn_NW_014998353v1    67044 1499 -     93100 cttttaaactgcc-tttaggtatagagtgaagttactgatttgcgattttttt-aatgcagttgtttatatctatacattttccttcaaactctactttcactgcattcactaagttttggtatgttttgtttttatattgtctcaagatattttctaatttcacttgtgatttattctttcactggtagtttaagagtatattgtttaatttctgcttatttgtgaatttttcag-------ttttcacttatctgttgtttcctccattgtggttgtaaattatattttgtaagatttagaacttttaaaaatgattaggacatatttttgtggacaaagatatggcctatcccagagaaagtgccacatccactcaaaaagaat-----gtatattttgctgttgttgggtggactgttctgtacatg--------ctctaaatggtttatactgttgttcaagtcttctatttctcatgaagtttctgtctcgtttttctgcccattaattaaaatgaggtattgaagtgtccaactactattatagaactgtgtgtttatcctttcaatcctgttaa-tttttttcagctttactgaggtatatttgagaaataaatattgtacatattcaa-gtttacaatctgatgtgtctatatgtatgcacattctgaaatgattaccaaaatgaagtcaattaatatactaattacctcacataatagttaccttttttgtgtgcatgcatgagataagaatactt-aCCCCATCCCTAGAGACCGCAGAGCGGCCATTCCAGCTGCTCCAGGCTCCCGCAGAGGAGGAGCGGGGCGGGTGGCACCGCCAGGGGGGGCCCTCAGGCCTGGCGGGCACGCATTCCAGAGGCTGCCCAGGCCAAGGTGCAGTTGTCCTCTGCCCTGTGTGTGCGGGCAGCAGCCGCCCGTCGTCTCCCAAACCCGCTCGCGCCGCCGGCATCGCAGAGCCTGGGCCAGACATCCTGGAGGCTGCACAGGAACAAGAACTGAGAACCTGCTGCTCAAACCCATCCCAGGTGACTGCGGACTGCCAATGCCAGCGGCTCCTGT--CTCCCTGAGGTGGAGGAGTGGAGCGGGATGCACGACTTGGGGGCCCTCAGGCTGGGCGCGCTGGCCATCCCCAGGCCTCCCAGGCCATGCCCCTCCAGCCCGTCTGGGCTCACCAGCTGCAGCCACCCTCTGTGTGCAGGTAGCAGCCTATGGGAAACCTCTAAGCCAGCCTGCACTCTTAACACCTCAGAACC-GGGGGCAGATGTCCCGGTGGCTGCAGCCAAGCCAGATGGTCTGCCCCATAGTGGCTGCACAGGAGCGGGAACCTGCCGCTCAATCCTATCCCCGGTGGCTGCAGAGGGCCCCTGGCCAGCGGTCCTGAGCTCTGGCAGAGGAGGGGGCAGGGCCTGGCGGACTCTCAGGCTCGGTGCACTGGTGATCCAGAGGCCGCTCAGGCCATGCTCCCCCGCCTGGACGCCCAAGCTGCTGCCACCC
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s colAng1.NW_012115910v1        6846886 1503 -   6934359 cttttaaactgcc-tttaggtatagagtgaagttactgatttgagatttttta-aatgtagttgtttatatctatacattttccttcaaactctactttcactgcattcactaagttttggtatgttttgttttcattttgtctcaagatattttctaatttcacttgtgatttattctttcactggtagtttaagagtgtattgtttaatttctgcatatttgtgaatttttcag-------ttttcacttatctgctgtttcctccattgtcattgtaaattatgttttgtaagatttaaaacttttaaaaatgattaggacatatttttgtggacaaagatattgcttatcccagagaaagttccgcatccactcaaaaagaat-----gtatattctgctgttgttggatgggctgttctgtacatgtgtattaactctaaatggtttatactgttcttcaagtcttctatttctcattaagcttctgtctggtttttctacccatgaattaaaatgaggtattgatgtgtccaactactattatagaactgtgtgtttatcctttcaatcctgttaa-tttttttcagcttta------tatatttgaaaaataaatattgtacatattcaaggtttacaatctgatgtttctatatgtatgcacattccgaaatgattaccaaaatgaagtcaattaacatactaattacctcacataatagttaccttttttgtgtgcatgcatgagataagaatactt-aCCCCATTCCTAGAGACTGCAGAGCAGCCATTCCAGCTGCTCCAGGCTCCTGCAGAGGAGGAGCGGGGCGGGTGGCACCGCCAGGGGGGACCCTCAGGCCTGGCGGGCACGCACTCCAGAGGCTGCCCAGGCCAAGGTGCAGCCGCCCTCTGCCCTATGTGTGCAGGCAGCAGCCGCCTGTCATCTCCCAAGCCCGCTCCCGCCGCCGGCATCGCACAGCCTGGGCCAGACATCCTGGAGGCTGCACAGGAACAAGAACTAAGAACCTGCCGCCCAAACCCATCCCAGGTGACTGCGGACTGCCCATGCCAGCGGCTCCTGT--CTCCCTGAGGTGGAGGAGTCGAGCGGGATGCACGACTTGGGGGCCCTCAGTCTGGGCGCGCTGGCCATCCCCAGGCCTCCCAGGCCATGCCCCTCCAGCCCGCCTGGGCTCCCTAGCTGCAGCCACCCTCTGTGTGCAGGTAGCAGCCTATGGGAAACCTCTAAGCCTGCCTGCACTCTTAACACCTCAGAACCGGGGGGCAGATGTCCCGGTGGCTGCAGCCAAGCCAAATGGTCTGCCCCATGGTGGCTGCAGAGGAGCGAGAACCTGCCGCTCAATCCTATCCCCGGTGGCTGCAGAGGGCCCCTGGCCAGCGGTCTCGAGCTCTGGCAGAGGAGGGGGCAGGGCCTAGCGGGCTCTCAGGCTCGGTGCACTGGTGATCCAGAGGCCGCTCAGGCCATGCTCCCCTGCCTGGACGCCCAAGCTGCTGCCGCCC
i colAng1.NW_012115910v1       C 0 C 0

a score=113604.000000
s hg38.chr15_KI270851v1_alt       62624 234 +    263054 TCCGCCTGCAAGCAGTAGCTGCCTGGCAACTCCCAAGCTCGCTCGCGCTCCCAGCATCGCAGAACCAGGGCCAAATGTCACCGTGGCTGCGGCCAAGCCAGGCGGTCTGCCCGGCGGCGGCTGCAGAGGGGCGAGAACTGAGAACCTGCCGCTCAACCCCATCTCTGTAGGCTGCGGAGTGGGGTCCGGACTCCCTCGGACGGCCTGGCCAGCAGTTCTGAGGT-CCGGCAGAGG
s gorGor5.CYUI01000350v1          65479 234 -    142253 TCCGCCTGCAGGCAGTAGCTGCTTGGCAACGCCCAAGCTCGCTCGCACTCCCAGCATCGCAGAACCAGGGCCAAATGTCACCGTGGCTGCGGCCAAGCCAGGCGGTCTGCCCGGCGGCGGCTGCAGAGGGGCGAGAACTGAGAACCTGCCGCTCAACCCCATCTCTGTAGGCTGCGGATTGGGGTCCGGACTCCCTCGGACGGCCTGGCCAGCAGTTCTGAGGT-CCGGCAGAGG
i gorGor5.CYUI01000350v1       C 0 C 0
s rheMac8.chrUn_NW_014998353v1    68543 235 -     93100 TCCGCCTGCGGGCAGCAGCTGTCTGGGAACTCCTAAGCTCGCTCGCGCTCCCTGGATCGCAGAACCCGGGCCAAATGTCACCGTGGCTGTGGGCAAGCCAGGTGGTCTGCCTGGCGGCGGCTGCACAGGAGCGAGAACTGACAACTTGCCGCTCAGCCCCATCTCTGTTGGCCGCGGAGTGGGGTCTGGGCTCCCTTGGACCACCTGGCCAGCGGTCCCGAGCTCCCGGCAGAGA
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s colAng1.NW_012115910v1        6848389 234 -   6934359 TCCGCCTGCGGGCAGCAGCTGTCTGGGAACTCCCAAGCTCGCTCGCGCTCCCTGGATCGCAGAACCCGGGCCAAATGTCACCGTGGCTGCGGCCAAGCCAGGTGGTCTGCCCCGCGGAGGCTGCACAGGGGCGAGAACTGAGAACCTGCCGCTCAACCCCATCTCTGTTGGCCGCGGAGTGGGGTCTGGGCTCCCTTGGACCGCCTGGCCAGCGGTCCCGAGCT-CCGGCAGTGA
i colAng1.NW_012115910v1       C 0 C 0
e nomLeu3.chr6                 75974442 261 + 121039945 M

a score=271991.000000
s hg38.chr15_KI270851v1_alt       62858 380 +    263054 AGGAGGGCAGGAGGCACGGCGAAGGGTACGGACTCTCAGGC--CGCGCGCGCTCGCAATCCCAAGACTGCCCAGGCCATGCCCCGCTAGC---CCTGGGCGCCCAAGCTGCAGCTGCTTT-----TTTGTTTGTTTTTCTTTTTGCAGGCAGCAGCTGCCAGGCAACCTCCAAGCCCGCCAGCACCCCCAGCCTCGCAGAACTCGGGCCAG-TGTCGCCGTGGCTGCAGCCAAGCCCGGCGGTCGGCCTGGCGGCGGCTGCACTAAAAACAAAAACTGGCCTCAGCCCCATCCCCGGTGGCTGCGGAGGGCCCCTGCCAGCGGCCCTATCTTTCTTCAAAGGAGGAGCAGGGCGGCCAGAGCGGCCGGGAGGGCTGCGCGCCTGCGATCCT
s gorGor5.CYUI01000350v1          65713 384 -    142253 AGGAGGGCAGGAGGCACGGCGAAGGGTACGGACTCTCAGGC--CGCGCGCGCTCGCAATCCCAAGACTGCCCGGGCCATGCCCCGCTAGC---CCTGGGCGCCCAAGCTGCAGCtgcttttt-tgtttgtttgtttttctttttgCAGGCAGCAGCCGCCAGGCAACCTCCAAGCCCGCCAGCGCCCCCAGCCTCGCAGAACTCGGGCCAG-TGTCGCCGTGGCTGCAGCCAAGCCCGGCGGTCGGCCTGGCGGCGACTGCACTAGAAACAAAAACTGGCCTCAGCCCCATCCCCGGTGGCTGCGGAGGGCCCCTGCCAGCGGCCCTATCTTTCTTCAAAGGAGGAGCAGGGCGGCCAGAGCGGCCGGGAGGGCTGCGCGCCTGCGATCCT
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                 75974703 372 + 121039945 AAGAGGGCGGGAGGCATGGCGAAGGGG-----------------GCGCGCGCTGGCAATCccaagaccgcccagcccatgccccgccagcccgccTGGACGCGCAAGCTGCAGCTGCTTTTT-TGTTTGTTTGTTTTTCTTTCTGCAGGCAGCAGCCGCCAGGCAACCTCCAAGCCCGCCAGCGCCCCCAGCCTCGCAGAACTCGAGCCAG-TGTCGCTGTGGCTGCAGCCAAGCCCGGCGGTTGGCCTGGCGGCGGCTGCACTGGAAACAAAAACTGGCCTCAGCCCCATCCCCGGTGGCTGCGGAGGGCCCCTGCCAGCGGCCCTATCTGTCTTCAAAGGAGGAGCAGGGCGGCCAGAGCGGCCCGGAGGGCTGCGCGCCTGCGATCCT
i nomLeu3.chr6                 M 261 C 0
s rheMac8.chrUn_NW_014998353v1    68778 376 -     93100 AGCCGAAGGGGAGGCCCGGCGAAGGGGACGGACTCTCAGGCCGCGCGCGCGCTCGCAATCCCACGGCCTCCTAGGCCATGCCCCACCAGCCCTCCTGGTTGCCCAAGCTGCAGCCGCTTTTA---TTTGTGTGTG--------TGCAGGCAGCAGCCGCCAGGCAACCTCCAAGCTCGCCAGCGACCCCAACCTCGCAGAACCTGGGCCAGATGCCGCCGTGACTGCGGCCAAGCCAGGCGGTCTGCCTGGCGGCGGCCGCACTACAAGCAAAAACTGA-CTCAGCCCCATCCCCGGTGGCTGCGGAGGGCCCCGGCCAGCTACCCTCTCTCTCTCCA---GACGAGCAGGGCGGCCAGCGCTGCCGGGCGGGCTGTGCGCCTGTGATCCT
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
s colAng1.NW_012115910v1        6848623 378 -   6934359 AGCCGAAGGGGAGGCACGGCGAAGGGGACTGACTCTCAGGC--CGCGCGCGCTCGTAATCCCACGGCCGCCCAGGCCATGCCCCGCCAGCCCTCCTGGTTGCCCAAGCTGCAGCCCCTTTTATTGTTTGTGTGTG--------TGCAGGTAGCAGCCGCCAGGCAACCTGCAAGCCCGCCAGCGACCCCAACCTCGCAGAACCTGGGCCAGATGCCGCAATGACTGTGGCCAAGCCAGGCAATCTGCCTGGCGGCGGCGGCACTAGAAGCAAAAACTGACCTCAGTCCCATCCCCGGTGGCTGCGGAGGGCCCCGGCCAGCTACCCTATCTCTCTTCA---GAGGAGCGGGGCGGCCAGCGCTGCCGGGCGGGCTGCGCGCCTGCGATCCT
i colAng1.NW_012115910v1       C 0 I 61

a score=35349.000000
s hg38.chr15_KI270851v1_alt       63238 86 +    263054 ACGGCGTCCCAGGGGAGCCCAAGAGAACCGGTGAGCCAGCGGCGCCTGCGCCCAAGCTGTAGCCGCCCCTTGCGGAC-CGCGCCACT
s gorGor5.CYUI01000350v1          66097 86 -    142253 AGGGCGTCCCAGGGAAGCCCAAGAGAACCGGCGAGCCAGCGGCGCCTGCGCCCAAGCTGTAGCCACCCCTTGTGGAC-CGCGCCACT
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                 75975075 85 + 121039945 AGGGCGTCCCAGGGGAGCCCAAGAGAACCGGCGAGCCAGCGGCACCTGCGCCCAAGCTGTAGCCGCCCCCTGAGG-C-CGCGACGCT
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1    69154 86 -     93100 GGGGCATCCTGGGCGGGCCC-AGAGAACCCGCGAGCCAGCGGCGCCTGAGCCCGAGCTGTAGCCGCCCCCTGCTGGCGCGCGCTGCC
i rheMac8.chrUn_NW_014998353v1 C 0 C 0
e colAng1.NW_012115910v1        6849001 61 -   6934359 I

a score=47175.000000
s hg38.chr15_KI270851v1_alt       63324 58 +    263054 TGGGAGAGGCTTCCGGAGTCCCCGCGGGCGCTGAGCTGCAAGCGTGCGCCTACAGGCT
s gorGor5.CYUI01000350v1          66183 58 -    142253 TGGGAGAGGCTTCCGGAGTCCCCGCCGGCGCTGAGCTGCAAGCGTGCGCCTAAAGGCT
i gorGor5.CYUI01000350v1       C 0 C 0
s nomLeu3.chr6                 75975160 58 + 121039945 TGGGAGCGGCTTCCCGAGTCCCGGCGGGCGCTGAGCTGCAAGCGTGCGCCTAAAGGCT
i nomLeu3.chr6                 C 0 C 0
s rheMac8.chrUn_NW_014998353v1    69240 58 -     93100 TGGGAGCGGCTTCCGGAGTCCCGGCGGGCTCTGAGCTGCAGGCGGGTGCCTAAAGGCT
i rheMac8.chrUn_NW_014998353v1 C 0 N 0
s colAng1.NW_012115910v1        6849062 58 -   6934359 TGGGAGCGGCTTCCGGAGTCCCGGCGGGCTCTGAGCTGCAGGCGGGTGCCTAAAGGCT
i colAng1.NW_012115910v1       I 61 N 0

a score=357571.000000
s hg38.chr15_KI270851v1_alt    63382 1407 +    263054 TCGCTTGGCTTACTCGGTCTGAGAGGTCGGAGGCTGCCAGTGTCGCTGCTGAAGGCTGTTAAAACCAGCTACACAACCATCTGAAAGCCATTTTCCTCCCTCTGGTTAAAAACAGTCATATGTCgctgggcgcggtggctcacgcctgtaatcccagcactctgggaggccgaggcaggcggatcacgaggtcaggagatccagaccatcctggctaatacggtgaaactccgtctctgctaaaaaatacaaaaaattagccggccgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaatccaggaggtggaggttgcagtgagctgagatcacgccactgcactccagcctgggcgacagagcgagactccgtctca------------aaacaaacaaacaaacaaacaaacaaaGAAAA---------CCAGTCATGTGTCTACTGATGATGTAGTTAAAGCTGTGTCTAGATCTATCTCTCAGCAGGGACGTGGTTTCTCAAATGCGAATGTTTGACCGGCAAAAGTTTTGCAGCCAGAGCCTGTGCAAGTATTGGCAGATTGAAAATACAAAATCAAGGCACTTCTCACGCCTAGC--------tttttttttttcttttttgagacagagtctcactgtgttgccccaggctgcaatgcaatggtgcgatcttggctcactgcaacctccgcctcctgggttcaagcggttctcctgtctcagcctcctgagtagctgggattacaggcatgagccaccatgcccagctaatttttgtatttttagtagagatggggtttcaccacgttggccaggctggtctggaactcctgacctcagatgatgcgccaccttggactcccaaagtgttgagatttcaggcgtgaaccaccgcgcctggcTGGAAACTAtttttgttttgttttgagacacgaactcactctgccgcccaggctagagtgtagtggcatgatcaaactcactaaagcctcgacctcctgggctcaaatagtcctcccccaccagccccagagtagctgggactacaggtgtgtggtaccatggctggttaattttttttttttttttttaattttgagacagagtctcactctgttgtccaggctggagtggaatgctgtgatctcggctcactgcaacctccacctcctgggttcaag-cgattctcctgtctcagcctcctgagtagctgggattacaggtgtgtgccaccatgcccggctaatttttgtattttcaacagagacgtggtttcacctcgttggccaggctggtcttgaactcctcggctcaagcgattcacctgccttggcctcccaaagtgctgggattacaggtgtgagccactgagcATCTGATGTCAAAAAGATTAATAAATGGT
s gorGor5.CYUI01000350v1       66241 1426 -    142253 TCGCTTGGCTTACTCGGTCTGAGAGGTCGGAGGCTGCCAGTGTCGCTGCTAAAGGCTGTTAAAACCAGCTACACGACCATCTGAAAGCCATTTTCCTCCCTCTGGTTAAAAACAGTCATATGTCgctgggcgcggtggctcacgcctgtaatcccagcactctgggaggccgaggcaggtggatcacgaggtcaggagatagagaccatcctggctaatacggtgaaactccctctctgctaaaaaatacaaaaaatcagccggccgtggtggcgggcgcctgtagtcccagctactc-ggaggctgaggcaggagaatggcgtgaatccaggaggtggaggttgcagtgagccgagatcatgccactgcactccagcctgggtgacggagcgagactccgtctcaaaaaaaccaaacaaacaaacaaacaaacaaacaaacaaacaaaACAAGAAACCCCAGTCATGTGTCTACTGATGATGTAGTTAAGGCTGTGTCTAGATCTACCTCTCAGCAGGGACATGGTTTCTCAAATGCGAATGTTTGACCGGCAAAAGTTTTGCAGCCAGAGCCTGTGCAAGTGTTGGCAGATTGAAAATACAAAATCAAGGCACTTCTCACGCCTAGC---ttttttttttttttttcttttttgagac--agtctcactgtgttgccccaggctgcagtgcaatggtgcgatcttggctcactgcaacttccgcctcctgggttcaagcggttctcctgtctcagcctcctgagtagctgggattacaggcataagccatcatgcccagctaatttttgtgtttttagtagagatggggtttcaccatgttggccaggctggtctggaactcctgacctcagatgatgcgccaccttggactcccaaagtgttgagatttcaggcgtgaaccaccgcgcccggcTGGAAACTAtttttgttttgttttgagacacgaactcactctgctgcccaggctagagtgtagtggcatgatcaaactcactaaagcctcgacctcctgggctcaaatagtcct-ccccatcagccccagagtagctgggactacaggtgtgtggtaccatggctggttaa---tttttttttttttttaattttgagacagagtctcaccctgttgtccaggctggagtggaatggtgtgatctcagctcactgcaacctctacctcctgggttgaag-cgattctcctgtctcagcctcctgagtagctgggattacaggtgtgtgccaccatgcccggctaatttttgtattttcaatagagacgcggtttcacctcgttggccaggctggtcttgaactcctcggctcaagcgtttcacctgccttggcctcccaaagtgctgggattacaggtgtgagccactgagcATCTGATGTCAAAAAGATTAATAAATGGT
i gorGor5.CYUI01000350v1    C 0 N 0
s nomLeu3.chr6              75975218 1386 + 121039945 TCGCTTGGCTTACTCTGTCCGAGAGGTCGGAGGCTGCCAGTGTCACTGCTAAAGGCTGTTAAAATCAGCTACACAACCATCTGAAAGCCATTTTCCTCCCTCTGGTTAAAAACAGTCATATGTCgccgggcgcggtggctcacgcctgtaatcccagcactctgggaggccgaggcgggcggatcacgaggtcgggagatcgagaccatcctggctaatacagtgaaactccggctctactaaaaaatacaaaaaaatagctgggcgtggtggcaggcgcatgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggcggaggttgcagtgagcc-agatcacgccactgcactccagcctgggtgacagagggagactgtgtctca------------aaa---------------------aaaaaaaa---------aCAGTCATGTGTCTAC---TGATGTAGTTAAGGCTGTGTCTACATTTATCTCTCAGCAGGGACATGGTTTCTCAAATGCGAATGTTTGACCTGCAAAAGTTTTGCAGCCAGAGCCTGTGCAAGTATTGGTAGATTGAAAATACAAAATCAAACCACTTCTCATGCCTAGCttttttttttttttttttttttttctgagacagagtctcactgtgttgccccaggctggagtgcaatggtgcaatcttggctcactgcaacctccgcctcctgggttcaagcggttctcctgtctcagcctcctgagtagctgggattacaggcatgagccaccatgcccagctaatttttgtagttttagtagagatggggtttcaccatgttggccaggctggtctcgaacccctgacctcagatgatgcgccacctcggactccaaaagtgttgagatttcaggcgtgaaccaccttgcccggcTGGAAACTAtttttgttttgttttgagacacgaactcactctgccgcccaggctagagtgcagtggcatgatcaaactcactagagcctcgacctcctgggctcaaatagtcctcccccatcagccccagagtagctgggactacaggtgtgtggtaccacgactggttaa-----tttttttttttttaattttgagacagagtctcaccctgttgtccaggctggagtggaatggtgtgatctcggctcactgcaacctccacctcctgggttcaagccggttctcctgtctcagcctcctgagtagctgggattacaggtgtgtgccaccatgcccggctaatttttgtgttttcaatagagacgcggtttcaccacgttggccaggctggtcttgaactccttggctcaagcgattcgcctgcctcggcctcccaaagtgctgggattacaggtgtgagccactgagcagctgatgtcaaaaagattaataaatggt
i nomLeu3.chr6              C 0 C 0

a score=90707.000000
s hg38.chr15_KI270851v1_alt     64789 250 +    263054 gcctcctgagtggctgggattgcaggcatgtgccacaataccccattagttgtttagtttttattttttttggtagagacagggtttctccatgttggtcgggg---tggtctggagctcctc-cctcaggtaatccgccggcctcggcctcccggggtgctgggattgcaggcgtgagtcactgagcctggccCGAAACCCGGTCCCATAACGGAAAAACAAAacaaaaaccacaaagattagcc-----------gccccaca
s gorGor5.CYUI01000141v1         4125 254 -    281578 gcctcctgagtggctgggattgcaggcgtgtgccaccatgcccagttagtttttta--------tttttttggtagagactgggtttctccatgttggtcaggc---tggtctccagctcctcacctcaggtgatctgccggactccgccttctggggtgctgggattgcaggcatgagtcactgtgcctgacccgacaccaggtctcttaacggaaaaacaaaacaaaaaccataaagattagcctggcctggtgggcccggcg
i gorGor5.CYUI01000141v1    N 0 C 0
s nomLeu3.chr6               75976604 243 + 121039945 gcctcctgagtggctgggattgcgggcgtgggccaccatacccggttagttgtttcgtttttattttttttggtagagacagggtttctccatgttggtcgggg---tggtcccgagctcctcccctcgggtaatccgcgggcctcggcc--------tgctgggattgcaggcgtgagtccctgcacctggccCAAAACCCGGTCTCATAACGGAAAAACAAAacaaaaaccacaaagattagcc-----------gcccctca
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              170281917 252 - 171882078 gcctcttgactgactgagattgcaggcgtgagccaccatgcccggttagttttttatt------ttttattggtagagactgggatcctccatgttgctcgggctgttggtctccacctcctcccctcgggtgatccaccggccttggccttcgggggtgctggtattgcaggcatgagtcactgagtctggccccaaacccggtttc--aacgga-----aaaacaaaaaccacaatgatgagcagagcgtggtgggcccgggg
i macFas5.chr7              N 0 C 0

a score=984600.000000
s hg38.chr15_KI270851v1_alt     65039 902 +    263054 ggtagtcccagctgctcccaaggctgatctaggaggattgcttgagcccgggggtggaggtggcagtgagccatgatggcgctgctgcagtccagacagagcaacagagagggactgtgtctcaggaaac-gggagaggaaaaaaaaaa----------------GTATACAAAAGTGCTAAATCAAGGAACAGCTTGACAGTATATTATTGAGAGACAAAGAGGCAAAGGTTAGCAGACACCGATGTTCGCTTAGT-GGAACTGCAGGTGTCCCC--CACAGGAGGGTGCCACTTTTCCAAAAGAAATGTATTATTGAC-------AAAAAAAAAAAAGTTGTAGGTTTGTTACAATATACAAATAGCTAAACTTTATATAGCCACGACCCTCTTCTAGCACTGCTCTAAGCCTTTTCCTGCTCTGGAATAGCTACTATTGTTACCTCCATTGTAGAGAAAACAGATGGGGGAGGTTGTTGTGGAAGGACCAGGGAAACTGACTATGAAATTGAC---TTGTAAGTTGAGGACTTAAAGGTTCTTCCTGCTTTGCTCCTTACATTGCCACATTTTAGTTAACATACCTCTTAAAATACTGATCCTTTCTGTATTTGGAGGGACTCCTCTTGCAGTTTGAAGTTTTTT-CTTACACTAAGCATCTGGTTAGAAGATCATCTCCATTTTATGTCA-GTTTAAG------TTTAGACATTGTTCAGTAAGGAATGTAAATATGAGCAAACAGTTATctgattgaaatagataaactagaaaaaaaatcacctatgagaaagtcaacaaaatgtcaactctggatttgtggctattttcagaa--tattaattttttgatatttaatggcattgtgaatatatttatttttaagaattccttgtcttctacagatacatataaggtaa-ttaaaaa-tgataggatg
s panPan2.chr15              25801517 904 +  99763055 ggtagtcccagctactctgaaggctgatgcaggaggattgcttgagcccggag-tggaggtggcagtgagccatgatggcactgctgcagtccagactgggtgacagagcaggactgtgtctcaggaaaa-gggaaaggaaaaaAAGAATAATAAAGGAAAAGAAGTATATAAAATTGCTAAATCCAGGAACAGCTTCACAGTATATT---GAGAGAAATAGAGGCAAAGGTTAGCAGACACCAATGTTCACTTAGT-GGAACTGCAGGTGTCCCC-AGACAGGAGGCTGCTACTTTTCCAAAAGAAATCTATTATTGAC-------AAAAAAAA-----------GTTAGTTACAATATACAAATAGCTAAACTTTATATAGCCACGACCCTCTTCTAGCACTGCGCTAAGCCTTTTCCTGCTCTGAAATAGCTACTATTGTTACCTCCGTTGTAGAGAAAACAGATACCAGAGGTTGTTGTGGAAGGACCACGGAAACTGACTATGAAATTGAC---TTGTAAGTTTAGGACTTAAAGGTTCTTCCTGCTCTGCTCCTTGCATTGCCACATTTTAGTTAACATACCTCTTAAAATACTGGTCCTTTCTATATTTGGAGGGATTCCTCTTGCAGTTTGAAGTTTTT--CTTACACTAAGCATCTGGTCAGAAGATCATCTCCATTTTATGTCA-GTTTAAG------TTTAGACATTGTTCAGTAAGGAATGTAAATATGAGCAAACAGTTATctgattgaaatagataaactagaaaaaaaatcacctatgagaaagtcaagaaaatgtcaactctggatttgtggctattttcagaa--tattaattttttgatatttaatggcattgtgaatatatttatttttaagaattccttgtcttccacagatacatataaggtaa-ttaaaaaatgacaggatg
i panPan2.chr15             N 0 C 0
s gorGor5.CYUI01000141v1         4379 913 -    281578 ggcagtcccagctactctgaaggctgatgtaggaggattgcttgagccagggg-tggaggtggcagtgagccatgatggcactgctgcagtccagactgggcgacagagcaggactgtgtctcaggaaaa-cagaaaggaaaaaaaata----aagaaAAAGAAAGTATATAAAATTGCTAAATCAGGGAACAGCTTGACAGTATATTATTGAGAGAAATAGAGGCAAAGGTGAGCAGACACCAATGTTCACTTAGT-GGAACTGCAGGTGTCCCC-AGACAGGAGGCTCCTATTTTTCCAAAAGAAATCTACTATTGACTaaaaaaaaaaaaaaaaaaaaaGTTGGTTTGTTACAATATACAAATAGCTAAACTTTATATAGCCACCACCCTCTTCTAGCACTGCTGTAAGCCTTTTCCTGCTCTGAAG-AGCTAC---TGTTACCTCCATTGTAGAGAAAACTGATGCCAGA-GTTGTTGTGGAAGGACCACGGAA----ACTATGAAATTTAC---TTGTACGTTTCAGACTTAAAGGTTCTTCCTGCTCTGCTCCATACACTGCAACATTTTAGTTAACATACCTCTTAAAATACTGGTCCTTTCTGTATTTGGAGGGACTCATCTTGCAGTGTGAGTTTTTT--CTTCCACTAAGCATTTGGTCATAAGCTCATTTGCGTTTTATGTCAGGTTTAAGTACCTCTTCAGACATTGTTCAGTTAGGAATGTAAATATGAGCAAACAGGTATctgattgaaatagataacctag--aaaaaatcacttatgagaaagtcaagaaaatgtgaactctggatttgtggctattttcagaatgtattaattttttg-tctttaatggtgt------tatatttatttttaaaaattccttgtcttctacagatacatataaggtaatttaaaaaatgatatgata
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75976847 900 + 121039945 ggtagtcccagctactcccaaggctgacgtaggcggattgcttgagcctggaggtggaggtggcagtgagccatgatggctctgctgcagtccagactgggctacagagagggactgtgtctcaggaaac-aggagaggaaaaaaaaaa----------------GTATATAAAATTGCTAAATCAAGGAACAGCTTGACAGTATATTATTGAGAGAAAAAGAGGCAAAGGTTAGCAGACACCAATGTTCGCTTAGT-GGAACTGCAGGTGTCCCC--GACAGGAGGGTGCTACTTTTCCAAAAGAAATGTATTATTGACCA-----AAAAAAAAAAAAGTTGTAGGTTTGTTACAATATACAAACAGCTAAACTTTATATAACGACAACCCTCTTCTAGCACTGCTCTAAGCCTTTTCCTGCTCTGAAATAGCTACTATTGTTACCTCCATTGCAGAGAAAACAGATGCCAGAG---GTTGTGGAAGGACCACGGAAACTGACTATGAAATTGAC---TTGTAAGTTTCGGACTCAAGGG-TCTTCCTGCTCTGCTCCTTACATTGCCACATTTTAGTTAACATATCTCTTAAAATACTGGTCCTTTCTATATTTGGAGGGACTCCTCTTGCAATTTGAACTTTTTT-CTTGCACTAAGCATTTGGTCATAGGATCATCTGTGTTTTATGTCA-ATTTAAG------TTTAGACATTGTTCAGTTAGGAAGGTAAGTATGAGCAAACAGGTATctgactgaaatagataacctag--aaaaaatcacttatgagaaagtcaagaaaatgtgaactctggatttgtggctattttcagaatgtattaaatttttggtatttaatggcattgtgaatatatttatttttaaaaattctttgtcttctacagatacatataaggtaa-ttaaaaa-tgatatgatg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              170282169 903 - 171882078 ggtagtcccagctactgtgaaggctgatggaggaggattgcttgagaccgggg-tggaggtggcagtgagccacgatggcgctgctgcagtccagactgggaaacagagagggactgtatctcaggaaaa-gggaaaggaaaaaaaaGA------------AAAAGTAAATAAAACGGCTAAATCAAGGAACAGCTTGACAGTATGTTATTGAGAGAAACAGAGGCAAAGGTTAGCAGACACCAATGTTCACTTAGTGGGAACTGCAGGTGTTCCCTGGACTGGAGG-TGCTACTTTTCCAAAAGAAATCTGTTATTGACCA-----AAAAAAAAAGTAA------GTTTGTTACAATATACAAACAACTGAACTTTATATAGCCAGGACCCTCTTCTAGCACTGCTCTAAGCCTTTTCCTGctctgaaatagctactattgttaccgccattgtagagaaaacagatgccagaggtggttGTGGAAGGACCACGGAAAGGAACTATGAAATTGACTTGTTGTAAGTTTCTGACGGAAAGGTTCTTCCTGCTCTGCTCCTTACATTGCCACATTTTAGTTAACATCTCTCTTAAAATACTGGTCCTTTCTATATTTGGAGGGACTCCTCTTGCAGTTTCAAGTTTTTTCCTTGCATGAGGCATTTGGTCATAAGATCACCTGCATTTTCTGTCA-GTTTA-----------AGACATTGTTCAGTTAGGAATGTAAATATGAGCAAACAGGTATctgattgaaatagataacctag--aaaaaatcacttatgagtaagtcaagaacatgtgaactctagatttatggctatttcccgaatgtattacttttttggtatttaatggcattgcgaatatatttatttttaaaaattatttgtcttctacagatacatacacggtaa-ttaaaaaatgatatgatg
i macFas5.chr7              C 0 C 0
s colAng1.NW_012115677v1      3028178 910 +   3749464 ggtagtcccagctactgtgaaggctgatggaggaggattgcttgagactgggc-tagaggtggaagtgagccatgatggcgctgcttcagtccagactgggaaacagagagggactgtgtctcaggaaaaggggaagggaaaaaaaaga------------aaaaGTAAATAAAATGGCTAAATCAAGGAACAGCTTGACAGTATGTCATTGAGAGAAACAGAGGCAAAGATTAGCAGACACCAATGTTCACTTAGTGGGAACTGCAGGTGTTCCCCGGACAGGAGGCTGCTACTTTTCCAAAAGAAATCTGTTATTGACaa-----aaaaaaaaaaaaaaaG---GTTTGTTACAATATACAAACAACTAAACTTTATATAGCCAGGACCCTCTTCTAGCACTGCTCTAAGCCTTTTCCTGctctgaaatagctactattgttaccgccattgtagagaaaacggatgccagaggtggttGTGGAAGGACCACTGAAACTAACTATGAAATTGAC---TTGTAAGTTTCCGACTGAAAGGTTCTTCCTGCTCTGCTCCTGATATTGCCACATTTTAATTAACATCTCTCTTAAAATACTGGTCCTTTCTATATTTGGAGGGACTCCTCTTGCAGTTTCAAGTTTTTTCCTTGCAGGAGGCATTTGGTCACAAGATCACCTGCATTTTCTGTCA-GTTTAAG------TTTAGACATTGTTCAGTTAGGAATGTAAATATGAGCAAACAGGTATctggttgaaatagataacctag--aaaaaatcacttatgagtaagtctagaaaatgtgaactctggatttatggctatttcccgaatgtattacttttttggtatttaatggcattgcgaatatatttatttttaaaaattctttgttttctacagatacatatatggtaa-ttaaaaaatgatatgatg
i colAng1.NW_012115677v1    N 0 I 2

a score=108188.000000
s hg38.chr15_KI270851v1_alt    65941 84 +    263054 ta-------taggttttacttcaaaataattcagaggaagaaggaatgtatataaatgaagtgggaatgtaaatgaaacaaaactggcTGT
s panPan2.chr15             25802421 84 +  99763055 ta-------taggttttacttcaaaataattcagaggaagaaggaatgtatataaatgaagtgggaatataaatgaaacaaaactggctgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        5292 84 -    281578 ta-------taggttttacttcaaaataattcagaggaagaaggaatgtatataaatgaagtgggaatacaaatggaacaaaacaggatgt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              75977747 84 + 121039945 ta-------taggttttacttcaaaataattcagaggaagaaggaatatatataaatgaagagggaatataaatgaaacaaaactggctgt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               1688859 91 + 171882078 tataggttttaggttttacttcaaaataattcagaggaagaaggaatgtatataaatgaagtgggaatataaatgaaacaaagctggctgt
i macFas5.chr7              n 0 I 289
s colAng1.NW_012115677v1     3029090 84 +   3749464 ta-------taggttttacttcaaaataattcagaggaagaaggaatgtatataaatgaagtgggaatataaatgaaacaaagctggctgt
i colAng1.NW_012115677v1    I 2 C 0

a score=323129.000000
s hg38.chr15_KI270851v1_alt     66025 289 +    263054 ggccaggtgtggtggctcacgcctgtagtctcagcactttgggagaccgaggcaggtggatcacctgaggtcaggagttcaagaccagcctggccaacgtggtgaaacaccatctctactaaaaatac-aacaattagccggatgtggtgccgggtgcctgtaatcccagctactcgggaagctgaggcaggagaatcgcttgaacctgggaggtggaagttgcagtgagccaagatcatgccactgcactccagcctgggcaaccacagcaaaatcccacctttaaaaa
s panPan2.chr15              25802505 289 +  99763055 ggccaggtgtggtggctcacgcctgtagtctcagcactttgggagaccgaggcaggtggatcacctgaggtcaggagttcaagaccagcctggccaacgtggtgaaacaccatctctactaaaaatac-aacaattagccggatgtggtgccgggtgcctgtaatcccagctactcgggaagctgaggcagaagaatcgcttgaacttgggaggtggaagttgcagtgagccaagatcatgccactgcactccagcctgggcaaccacagcaaaatcccacctttaaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         5376 289 -    281578 ggccaggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcaaatcacctgatgtcaggagttcaagaccagcctggccaacgtggtgaaaccccatctctactaaaaatac-aaaaattagccggatgttgtgatgggtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcagaagtttcagtaagtcaagatcatgccactgcactccagcctgggcaaccacagcaaaagcccacctttaaaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75977831 288 + 121039945 ggccaggtgtggtggctca-gcctgtaatcccagcacttcgggaggccaaggcaggtggatcacctgaggtcaggagttcaagaccagcctggccgacatggtgaaaccccatctctactaaaaatac-aaaaattagctggatgtggtgccgggcgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaactcgggagggggaagttgcagtgagccaagatcatgccactacactccagcctgggcaaccacagcaaaaccccacctttaaaaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              170283072 286 - 171882078 ggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggctgagacaggcagatcac--gagatcaggatattgagaccatcctggctaacaccgtgaaaccccgtctctactaaaaatacaaaaaagtagccaggcgaggtggc-ggcacctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgggcctgggaggcagagcttgcagtgagccgacgtcgcgccactgcactccagcctgggc-gacagagcaagactctgtctcaaaaga
i macFas5.chr7              C 0 C 0
s colAng1.NW_012115677v1      3029174 289 +   3749464 ggccaggagcagtggctgacatctgtaatcccagcactttggaaggccaaggcaggcagatgacctgaggtcaggagtccaagaccagcctggccaacgtggtgaaaccccatctctagtaaaaatac-aaaaattatccggatgtggtgccaggcacctgtaatcccagctactcgggaggctgaggcaggagaactgcttgaacccaggaggcagaagttgcagtgagccaagatcatgccactgcactccagcctgggcaaacacagcaaaaccccacctttaaaaa
i colAng1.NW_012115677v1    C 0 C 0

a score=655.000000
s hg38.chr15_KI270851v1_alt     66314 7 +    263054 caaacaa
s panPan2.chr15              25802794 7 +  99763055 caaacaa
i panPan2.chr15             C 0 C 0
e nomLeu3.chr6               75978119 0 + 121039945 C
e gorGor5.CYUI01000141v1         5665 0 -    281578 C
e colAng1.NW_012115677v1      3029463 0 +   3749464 C
e macFas5.chr7              170283358 0 - 171882078 C

a score=210295.000000
s hg38.chr15_KI270851v1_alt    66321 311 +    263054 acaaacaaaaaaCAACCAAAAAAAAAAAAACT-GTCCATACCATGAATGAAAAATTGTTGATGATGTGTATATGTAGGGCAATtatatcatttattatatataatatatat---attatTTTTCTCAACTTTTTTTTACATCTGAAACTTTCTATTGAACACATGGACATGTCCCTTGATAACTGGGGCTGCTTCCCCATTATTCTCTCAGCAGCCCTTCTGATTTTCACTCCATCTTCATTCTTAGAGATTCTGGATTTTATTTTTTTTTTGGGGAAGTTCAAGTATGTCTTTGCAAGGATTATCCAGCATGTC
s panPan2.chr15             25802801 304 +  99763055 acgaacaaaaaa--------acaaaaaaaactagtccataccatgaatgaaaaattgttgatgatgtgtatatgtagggcaattgtatcatttattatatataatatatattatattatTTTTCTCAACTTTTTTTTACGTCTGAAACTTTCTCTTGAACACATGGACACGTCCCTTGATAACTGGGGCTGCTTCCCCATTATTCTCTCAGTAGCCCTTCTGATTTTCACTTCGTCTTCATTCTTAGAGATTCTGGATTTC---TTTTTTTTTGGCAAGGTCAAGTATGTCTTTGCAAGGATTATCCAGCATGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        5665 269 -    281578 ------aaatac--------aaaacaaaaact-ggccatgccatgaatgaaaaattgttgatgatgtatgtatgtagggcagttat----------------------------attatttttcttgac-tttttttaggtttgaaactttttatTGAACACATGCACACATCCCTTGATGACTGGGGCTGCTTCCCCATTATTctcgtactagcccttctgattttcacttcatcttcattcttagagattctggatttt--ttttttttttggcaagatcaaatatgtctttgcaaggactatccagaatgtc
i gorGor5.CYUI01000141v1    C 0 I 26
s nomLeu3.chr6              75978119 257 + 121039945 -----------a--------aaaaaaaaaact-gtccatgccatgaatgaaaaattgttgatgatgtgtacgtgtagggca---------------------------------attatttttctcaac-tttttttaggtttgaaaatttttatTGAATACACGCACACGTCCCTTGATAACTGGGGCTGCTTCCCCATTATTCTCTTAGTAGcccttctgattttcacttcatcttcattcttagagattctggatttt----ttttttttgacaagttcaagtatgtctttgcaaggactatccagcatgtc
i nomLeu3.chr6              C 0 I 26
s macFas5.chr7               1689239 178 + 171882078 ------------------acaaacaaaaagct-ggccatgccatgaatgaaaaattgttgatgatgtgtatatgtagggcaat-------------------------------attaattatctcaac-tttttttaggtttgaaactttttatTGAACACATGCACACATACCTTGATAACAGGGGCTACTTCCCCAT---------------------------------GTCTATTTTATGAGAGA----GGGTTT----------------------------------GCAGAG---------------
i macFas5.chr7              I 289 C 0
s colAng1.NW_012115677v1     3029463 253 +   3749464 ----------------------acagaaagtt-ggccatgccatgaatgaaaaattgttgatgatgtgtgtatgtagggcaat-------------------------------attaattatctcaac-tttttttaggtttcaagctttttatTGAACACGTGCACACATACCTTGATAAC--GGGCTACTTCCCCATTATTCTCACAGTAG-CCTTCTGATTTTCACTTCATCTTCATTCTCAGAGAGTCTGGATTTT----TCTTTTATGGCAAGTTCAAGTATATCTTGGCAAGGACtatccagcatgtc
i colAng1.NW_012115677v1    C 0 I 26

a score=52525.000000
s hg38.chr15_KI270851v1_alt    66632 29 +    263054 TACCTACTCAATCATATTATCAGAAACAG
s panPan2.chr15             25803105 29 +  99763055 TACCTACTCAACCATATTATCAGAAACAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        5960 29 -    281578 tacctactcagccatattatcagaaacag
i gorGor5.CYUI01000141v1    I 26 C 0
s nomLeu3.chr6              75978402 29 + 121039945 tacctactcagccatattatcagaaacac
i nomLeu3.chr6              I 26 C 0
s macFas5.chr7               1689417 29 + 171882078 CACCTACTCAGCCATATTATCAGAAACAG
i macFas5.chr7              C 0 n 0
s chlSab2.chr26              7500624 29 +  58131712 tacctactcagccatattatcagaaacag
i chlSab2.chr26             N 0 C 0
s colAng1.NW_012115677v1     3029742 29 +   3749464 tacctactcagccatattatcaaaaacag
i colAng1.NW_012115677v1    I 26 C 0

a score=2294616.000000
s hg38.chr15_KI270851v1_alt     66661 1443 +    263054 AAAAAGTGTCCAGATTCTTGTCTTGTCCTG-TTCAGATTTTTTAAATTCCAAGAACAGTCACCTTCTACCAGACACTCTGATGTTGGAAGACAAAGCATATTTGGTAAGTGGCATGATTTCTGGGCTCCGATTTAGAACAG--TCACAGCTTTCAACAATCCAAAAATAGCTGACTGTGACTCACCATATTTAGAAAGATGGAGATTATTAAAAAAAGAAAACCTTAATTTATTATGTGACCGCTAAGTGTCTCGGCTGAAAATTGTAAAGATAGAAAGGTAAATCAAAAGATACAGAGACTGTAATCATGCACTTAATAAAGCACTAAATCAAAATATATTTGGCATATGTGAAAGAGTTTAATTTTATCCC----ATTTTCTACTGGCACTATAGGTATTTGTAAGTACATATAAAACTACAGTGTTACATATAAACTACCAAAAAGGAACTT---AAGAAACGAGACTAATCTAGCAACTTTATTTAAAAGTTTATCTTAAGGGAATAATTAAGGATGTCCATACAAAAGGATTTAGCCATGACACGAGAATGTTCTTCCTGGCAAATCAATGGAAATTATTAAATGTGCAAAAGGGAACTGTTGGAATAAATTCTAATGCCTTCATATGATCGTATGTCGTAACCTTTTAAAATGATATTAAAGAGTTGCATACATTGACTTAAACAGATATTCATAACACATCACTGAATAGGAGAAATACGGGCCAGCAAAGAACATAGAGTTGGTCCAATTTCTAC-AAAAA-AAAGAAGA--CTAATAGCATGACAGCAGGGAAGGGGGAATATGTCAAtgtatg--tgtgtatatata----------tgtat--gcatagcaagtatgaacttgaaaggatatatatcaaattgtttacacagattacctcagagaggTAAATAACT--GGCCTTTGGTGTTCTGTGTTCCATAGATTCTGAATTTTCTTTTTTTATTTAAATAGAGATGGGATCTTAgccaggagcagtggctcacacctgtaatcccagcactttgggaggctgag-----------------------------------------------------------------------------gagggcggattgcttaaggccaggagttcaagaccaatctggccaacatggcaaaactctgtctctactaaaaa-tccaaaaattagcca--ggcgcagtggcttatgcctataaccccaggtactcgggaggctg-aggcataagaattgcttgaaccaggaggcggaggttgcagtgagcagagattgcaccactgcactccagcttaggcaacagaccgagactctgtcaaaaaataaaa----acaaaacaaaaCACCACCACCAACAACAAAACAGTAATAAAGAGAAAATCTTATggacaggagcaatgtctcatgcctgtaaccccagtgctttgggaggccaagatgggagaatcgcttgagcccaggagttcaagaccagcatgggcaacatagcaagaccttttctctac-aaaaaa--tttaaaa
s panPan2.chr15              25803134 1449 +  99763055 AAAAAGTGTCCAGATTCTTGTCTTGTCCTG-TTCCGATTTTTTAAATTCCAAGAACAGTCACCTTCTACCAGACACTCTGATGTTGGAAGACAAAGCATATTTTGTAAGTGGCATGATTTCTGGGCTCCAATTTAGAACAGAGTCACAGCTTTCAACAATCCAAAAATAGCTTACTGTGACTCACCATATTTAGAAAGATGGAGATTATTTAAAAAAGAAA-CCTTAATTTATTATGTGACCTCTAAGTATCTCGCCTGAAAATTGTAAAGATAGAAAGGTAAATCAAAAGATACAGAGACTGTAATCATGCACTTAATGAAGCACTAAATCAAAATATTTTTGGCATATGTGAAAGAGTTTAATTTTATCAC----ATTTTTTACTGGCACTATAGCTATTTGCAAGTACATATAAAACAACAGTGTTACATATAAACTACCAAAAAAGAACTTTTTAAGAAATGAGACTCATCTAGCAACTTTATTTAAAAGTTTATCTTCAGGGAATAATTAAGGATGGCCGTACAAAAGGATTTAGCCATGACACGAGAATGTTCTCCCTGGCAAATCAATGGAAATTATTAAATGTGCAAAATGGAACTGTTGGAATAAATTCTAATGCCTTCATATGATCGTATATT-TAACCTTTTAAAATGATATTGAAGAGTTGCATACATTGACTTAAACACACATTCGTAACACATCACTGAATAGGAGAAATACGGGCCAGCAAAGAACATAGAGTTGGTCCAATTTCTAC-AAAAA-AAGGAAGA--CTAATATCATGACAGCAGGGAAGGGGGActatgtcaacgtatg--tgtgtatatata----------tgtatatgcatagcaagtatgaacttgaaaggatatatatcaaattgtttacatagattacctcagagaggTAAATAACTTTGGACTTTGGTGTTCTGTATTCCACATGCTCTGAATTTTCTTTTTT-ATTTAAATAGAGATGGGATCTTAgccaggagcagtggctcacccctgtaatcccagcactttgggaggctgag-----------------------------------------------------------------------------gagggcggattgcttaaggccaggagttcaagaccaatctggccaacacggcaaaactctgtctctactaaaaactccaaaaattagcca--ggcgcagtggctcatgcctgtaaccccagacactcaagagactg-aggcatgagaattgcttgaaccaggaggcagaggttgcagtgagcggagatcacaccacggcactccagcctgggcaacagaccaagactctgtcaaaaaacaaaa-----caaaacaaaacaacaaccacaacaacaaaacaGTAATAAAGAGAAAATCTTACggacaggagcaatgtctcgtgcctgtaatcccagtgctttgggaggccaagatgggagaattgcttgaggccaggagttcaagaccagcattggcaacatagtaagaccttttctctac-aaaaaa--tttaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         5989 1447 -    281578 aaatATTTTCCATAT-----TCTTGTCCTG-TTTAGATTTTTTAAATTCCAAGAACAGTCACCTTCTACCAGACACTCTGATGTTGGAAGACAAAGCATATTTTGTAAGTGGCATGATTTCTGGGCTCAAATTTAGAACAGAGCCACAGCTTTCAACAACCCAAAAATAACTTACTGTGACTCACCAAATTTAGAAAGACGGAGATTATTAAAAAAAGAAAACCTTAATTTACTATGTGACCTCGAAGTATCTGGGCTGAAAATTGTAAATGTAGAAAGGTAAATCAAAAGATACAGAGACTGTAATCATGCACTTAATGAAGCACTAAATCAAAATATTTTTGGCATACGTGAAAGAGTTTAATTTTATCAC----ATTTTTTACTGGCACTATAGCTATTTGCAAGTCCATATAAAACTACAGTGTTACATATAAACTACCAAAAAAGAACTTTTTAAGAAATGAGACTCATCTAGCAACTTTATTTAAAAGTTTATCTTCAGGGAATAATTAAGGATGGCCGTACAAAAGGATTTAGCCATGGCATGAGAATGTTCTCCCTGGCAAACCAATGGAAATTATTAAATGTGCAAAATGGAACTGTTGGAATAAATTGTAATGCCTTCATATGATCGTATATT-TAAGCTTTTAAAATGATATTGAAGAGTTGCATACATTGACTTAAACACACATTCGTAACATATCACTGAACAGGAGAAATATGGGCCAGCAAAGAACATAGAGTTGGTCCAATTTCTACAAAAAA-AAAGAAGACTCTAATAGCATGACAGCAGGGAAGGGGGActatgtcaacgtatg--tgtgtatatgtg----------tgtatatgcatagcaagtatgaacttgaaaagagatatttcaaattgtttacacagattacctcagagaggTAAATAACT-------TTGGTGTTCTGTATTCCACATGCTCTGAATTTTCTTTTTTTATTTAAATAGAGATGGGATCTTAgccaggagcagtggctcacccctgtaatcccagcactttgggaggctgag-----------------------------------------------------------------------------g-gggaggattgtttgagg-caggagttcaagaccaatctggccaacacggcaaaactctgtctcaactaaaaa-ttcaaatattagccaggggtgcagtggctcatgcctgtaaccccaggcactcgagagactg-aggcatgagaattgcttgaaccaggaggcagaggttgcagtgagccgagatcacaccacggcactccagcctgggcaacagaccaagactctgtcaaaaaacaaaacaaaagaaaacaaaacaacaaccacaacaacaaaacaGTAATAAAGAGAAAACCTAATggacaggagcaatgtctcatgcctgtaatcccagtgctttgggaggccaagatgggagaattgcttgaggccaggagttcaagaccagcattggcaacatagtaagaccttttctctacaaaaaaa--tgtaaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75978431 1446 + 121039945 aaatATTTTCCAGATTCTGTTCTTGTCCTG-TTTACATTTTTTAAGTTCCAAGAACAGTCACCTTCTACCAGACATTCTGATGTTGGAAGACAAAGCATATTTTATAAGTGGCATGATTTCT-GGCTCAAATTAAGAACAGAGCCACAGCTTTCAACAACCCAAAAATAACTTACTGTGACTCACCATATTTAGAAAGATGGAGATTATTAAAAAAAGAAAACCTTAAGTTACTATGTGACCTCTAAGTATC-CGGCTGAAAATTCTAAAGATAGAAAGGTAAATCAAAAGATACAGAGACTGTAATCATGCACTTAATGAAGTGCTAAATCAAAATATTTTTGGCTTATGTGAAATTGTTTAATTTTATCAC----ATTTT-TACTGGCACTATAGCTATTTGCAAGTACATATAAAACTACAGTGTTACATATAAACTATCAAAAAAGAACTT---AAGAAATGAGACTAATCTAGCAACTTTACTTAAAAGTTTATTTTAAGGGAATAATTAAGGATGTCCATACAAAAGGATTTAGCCATGACATGAGAATATTCTTCCTGGCAAATCAATGGAAATTATTAAATGTGCAAAAGGGAACTGTTGGAATAAATTGTAATA-CTTCATATGATCATATATCATAACCTTTTAAAATGATTTTGAAGACTTGCATAAATTGACTTAAACACATATTTGTAATGCATGACTGAATAGGAGAAATATGGGCCAGCAAAGAACATAGCGTTGGTCCAATTTCTAC-AAAAC-AAAGAAGACTCTAATAGTATGACAGCAGGGAAGGGGGAATATGTCAACGTATGCATATGTATATGTA----------TATATACGCGTAGCAAGTATGAACTTGAAAGGATATATATCAAATTGTTTACACAGATTACCTCAGAGAGGTAAATAACTTTGGCCTTTGGTGTTCTGTATTCCACATATTCTGAATTTTCCTTTTTTATTTAAATAGAGATGGGATCTCAgccaggagcagtggctcatacctgtaatctcagcactttgggagggtgag-----------------------------------------------------------------------------aagggcagattgcttgaggccaggagttggagaccaatctggccaagatggcaaaactctgtctctactaaaaa-ttcaaaaattagcca--ggtgcagtggctcatgcctgtaaccccaggtactcagcaggctg-aggcatgagaattgcttgaacaaggaggcggaggttgcagtgagctgagatcacaccaccgcgctccagcctggacaacagaccaagactctgtcaaaaaa-aaaa-----caaaacaaaacaa-aaCAGCAACAAAAAAACAGTAATAAAGAGAAAACCTTATggacaggagcaatgtctcatgcctgtaatcccagtgctttgggaggccaaaatgggagaagtgcttgaggccaggagttcaagaccagcatgggcaacatagcaagactttttctctac-aaaaaa--tttaaaa
i nomLeu3.chr6              C 0 I 329
s macFas5.chr7              170283358 1436 - 171882078 aaaTATTTTCCAGATTCTGTTCCTGTCCTGTTTTAGATTTTTTAAGTTCCAAGAACTGTCACCTTCTACCGGACACTCTGATGTTGGAAGACAAAGCATATTTTGTAAGTGGCATGATTTCTGGGCT-AAATTTAGAACAGAGCCACAGCGTTCAACAACCCCAAAATAACTTATTGTGACTCACCAAATTAAGAAAGATGGAGATTATTAAAAAAAGAAAACCTTAATTTACTATGTGACCTCTAAGTGTCTCGGCTGAAAATTGTAAAGATAGAAAGGTAAATCAAAAGATATAGAGACTGTAATCATGCACTTAATGAAGCGCTAAGTCAAAATATTTTTGGCATATGTTAAA--GTTTTATTTTATCAC-TTTTTTTTTTACAGGAACTATAGCTATTTGCAAGTACATATAAAACTACAATGTTACATATAAACtacgaattaagaactttttaagaaatgagactaatctagcaagtttatttaaacgtttaacttaagagaataattaaggatgtccatacaaaaggatttagccgtgacatgagaatgttcaccctggcgaatcaatggaaattattaaatgtgcaaaagttaactgttggaataaattgtaataccttcatatgatcgtatatcataaccttttaaaatggtattaaagagttgcataaattgacttaaacacatattcgtaacacatcactgaataggagaaatacaggccagcaaagaacatagagttggtccactttctac-aaaac-aaaGA-----CTAATAGCACGACAGCAGGGAAGGGGGAatgtgtcaacgtatacttgtgtacatgtg--------tatacatatgcgtagcaagtaggaacttgaaaggatagatatcaaattgtttacacagattacctcagagaggTACATAACTTTGGCCTGTGGTGTTGTGTATTCCACATATTCTGAATTTTCTTCTTTTATTTAAACAGAGACGGGTTCTTAgccaggagcagtggctcacacatgtaatcccagcactttgggaggctgag-----------------------------------------------------------------------------gagggcgcattgcttgaggccaggagttggagaccaatctggccaacatggcaaaactctgtctctactaaata-ttcaaaaattagcca--ggtgcagtggctcatacctgtaacc---------cgggaggctacaggcatgagaattgcttgaaccaggaggcggaggttgcagtgagctgagattgcaccactgcactccagtctgggaaacagaccaagactctctcaacaacaacaa---------------caacaacaa-aacaacaaaacagaaataaagagaaaaCCTTATGGACCAGAgcaatgtctcatgcctgtaatcccagtgctttgggaggtcaagatgggagaatcgcttcaggccaggagttcaagaccagcatgagcaacatagcaagaccttttctctac-aaaaaaatttaaaaa
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7500653 1414 +  58131712 aaatATTTTCCAGATTCTGTTCCTGTCCTGTTTTAGATTTTTTAAGTTCCAAGAACTGTCACCTTCTACCAGACACTCTGATGTTGGAAGACAAAGCATATTTTGTAAATGGCGTGATTTCTGGGCTCAAATTTAGAACAGAGCCACAGCTTTCAACAACCCCAAAATAACTTATTGTGACTCACCAAATTTAGAAAGATGGAGATTATT-AAAAAAGAACACCTTAATTTACTATGTGACCTCTAAGTGTCTCGTCTGAAAATTGTAAAGATAGAAAGGTAAATCAAAAGATATAGAGACTGTAATCATGCACTTAATGAAGCGCTAAGTCAAAATATTTTTGGCATATGTTAAA--GTTTAATTTTATCAC----TTTTTTTACAGGAACTATAGCTATTTGCAAGTACATATAAAACTACAATGTTACATATAAACTACCAattaagaactttttaagaaatgagactaatctagcaagtttatttaaacgtttaacttaagagaataattgaggatgtctatacaaaaggattcagccgtgacatgagagtgttcaccctggcaaatcaatggaaattattaaacgtgcaaaaggtaaatgttggaataaattgtaataccttcatatgatcgtgtatcataaccttttaaaatggtattaaagagttgcataaattgacttaaacacatattcgtaacacatcactgaataggagaaatacaggccagcaaagaacatagagtt-gtccactttctac-aaaac-acaGA-----CTAATAGCACGACAGCAGGGAAGGGGGAATGTGTCAACGTATACTtgtgtatatgtgtgtatatatatatatatgcatagcaagtaggaacttgaaaggatatatatcaaattgtttacacagattatctcagagaggTAAATAACTTTGGCCTTTGGTGTTCTGTATTCCACATATTCTGAATTTTCTTCTTTTATTTAAACAGAGACGGGTTCTTAgccaggagcagtggctcacacatgtaatcccagcactttgg-----------------------------------------------------------------------------------------------------gaggccaggagttggagaccaatctggccaacacggcaaaactctgtctctactaaata-ttcaaaaattagcca--agtgcagtggctcatacctgtaacc---------cgggaggctacaggcatgagaattgcttgaaccaggaggcggaggttgcagtgagctgagattgcaccactgcactccagtctcggaaacagaccaagactctctcaacaacaacaa---------------caacaac---aacaacaaaacagtaataaagagaaaaCCTTATGgaccggggcaatgtctcatgcctgtaatcccagtgctttgggaggtcaagatgggagaatcgctttaggccaggagttcaagaccagcatgggcaacatagcaagaccttttctctac-aaaaaaaatttaaaa
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3029771 1514 +   3749464 aaatATTTTCCAGATTCTGTTCCTGTCCTGTTTTAGATTTTTTAAGTTCCAAGAACTGTCACCTTCTACCAGACACTCTGATGTTGGAAGACAAAGCATATTTTGTAAGTGGCATGATTTCTGGGCTCAAATTTAGAACAGAGCCACAGCTTTCAACAACCCCAAAATAACTTATTGTGACTCACCAAATTTAGAAAGATGGAGATTATTAAAAAAAGAAAACCTTAATTTACTATGTGACCTCTAAGTGTCTCCGCTGAAAATTGTAAAGATAGAAAGGTAAATCAAAAGATATAGAGACTGTAATCATGCACTTAATGAAGCGCTAAGTCAAAATATTTTTGGCATATATTAAA--GTTTAATTTTATCACTTTTTTTTTTTACAGGAACTATAGCTATTTGCAAGTACATATAAAACTACAATGTTACATATAAACTACCAATTAAGAACTTTTTAAGAAATGAGACTAATCTAGCAACTTTATTTAAATGTTTAACTTAAGGGAATAATTAAGGATGTCCATACAAAAGGATTTAGCCGTGACATGAGAATGTTCACCCTGGCAAATCAATGGAAATTATTAAACGTGCAAAAGGGAACTGTTGGAATAAATTGCAATACCTTCATATGATCATATATCATAACCTTTTAAAATGGTATTAAAGAGTTGCATAAATTGACTTAAACACATATTCGTAACCCATCACTGAATAGGAGAAATACAGGCCAGCAGAGAATATAGAGTTGATCCACTTTCTAC-AAAACAAAAGA-----CTAATAGCACGACAGCAGGGAAGGGGGAatgtgtcaaggtatacttgtgtatatgtg----------tatatatgcatagcaagtaggaacttgaaaggatatatatcaaattgtttacacagattacctcagagaggTAAATAACTTTGGCCTTTGGTGTTCTGTATTCCACATATTCTGAATTTTCTTCTTTTATTTAAACAGAGACGGGTTCTTAgccaggagcagtggctcacacgtgtaatcccagcacttcgggaggctgaggagggtggattgcttgaggccaggagctggagaccaATCtggccccacgtgtaatcccagcacttcgggagactgaggagggtggattgcttgaggccaggagctggagaccaatctggccaacacggcaaaactctgtctctactaaata-ttcaaaaattagcca--ggtgcagtggctcatacttgtaacc---------cgggaggctataggcatgagaattgcttgaaccaggaggcggaggttgcagtgagctgagattgcaccactgcactccagtctgggaaacagaccaagactttctcaacaacaacaa---------------caacaacaacaaaaaaaaaACAGTAATAAAGAGAAAACCTTACggacaggagcaatgtctcatgcctgtaatcccagtgctttgggaggtcaagatgggagaatcacttcaggccaggagttcaagaccagcacgggcaacatagcaagaccttttctgtac-aaaaaaa-tttaaaa
i colAng1.NW_012115677v1    C 0 C 0

a score=159366.000000
s hg38.chr15_KI270851v1_alt     68104 88 +    263054 attagccaggcatagtagtgcatgcttatactcccagctacctgggaggctgaggtgggaggatcacttgagcatgagagttggaggt
s panPan2.chr15              25804583 88 +  99763055 attagccaggcatagtagtgcatgcttatactcccagctacctgggaggctgaggtgggaggatcacttgagcctaagagttggaggt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         7436 88 -    281578 atcagccaggcatagcagtgcatgcttatactcccagctacctgggaggctgaggtgggaggatcacttgagcctgagagttggaggt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75980206 88 + 121039945 attagccaggcatactagtgcatgcttatactcccaggtatgtgggaggctgaggtgggaggatcacttgagcctgagagttggaggt
i nomLeu3.chr6              I 329 C 0
s macFas5.chr7              170284794 88 - 171882078 actagccaggcatagtagtgcatgcttatactcccagctacctgggaggctgaggtgggaggatcacttgagcatgagaggtggaagt
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7502067 87 +  58131712 actagccaggcatagtagtgcatgcttatact-ccagctacctgggaggctgaggtgggaggatcacttgagcatgagaggtggaagt
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3031285 88 +   3749464 actagccaggcatagtagtgcatgcttatactcccagctacctgggaggctgaggtgggaggatcacttgagcatgagagttggaggt
i colAng1.NW_012115677v1    C 0 C 0

a score=26022.000000
s hg38.chr15_KI270851v1_alt     68192 15 +    263054 tgcagtgaactgtga
s panPan2.chr15              25804671 15 +  99763055 tgcagtaagctgtga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         7524 15 -    281578 tgcaggaagctgtga
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75980294 15 + 121039945 tgcagtgagctgtga
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              170284882 15 - 171882078 tgcagtgagctgcga
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7502154 15 +  58131712 tgcagtgagctgtga
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3031373 15 +   3749464 tgcagtgagctgcga
i colAng1.NW_012115677v1    C 0 C 0
s otoGar3.GL873533           30943544 15 +  31380117 TGAGATAAACAGGAG
i otoGar3.GL873533          N 0 C 0

a score=45661.000000
s hg38.chr15_KI270851v1_alt     68207 14 +    263054 tcacaccactgGGA
s panPan2.chr15              25804686 14 +  99763055 tcataccacCAGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         7539 14 -    281578 tcacaccacCAGAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75980309 14 + 121039945 tcacaccacCAGGG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              170284897 14 - 171882078 tcacaccacCAGGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1460645 14 +   1584492 TCACACCACTACGG
i cerAty1.NW_012002601v1    N 0 C 0
s chlSab2.chr26               7502169 14 +  58131712 tcacaccacCAGGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         2831 14 +    138091 TCACACCACTACGG
i manLeu1.NW_012101289v1    N 0 C 0
s colAng1.NW_012115677v1      3031388 14 +   3749464 tcacaccacCAGGG
i colAng1.NW_012115677v1    C 0 C 0
s otoGar3.GL873533           30943559 14 +  31380117 CCGCATCACCAGGG
i otoGar3.GL873533          C 0 C 0

a score=-55.000000
s hg38.chr15_KI270851v1_alt     68221 1 +    263054 -A
s panPan2.chr15              25804700 1 +  99763055 -A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         7553 1 -    281578 -A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75980323 1 + 121039945 -A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8221210 1 + 169600520 -A
i rheMac8.chr7              N 0 C 0
s macFas5.chr7              170284911 1 - 171882078 -A
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1460659 1 +   1584492 -A
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7502183 1 +  58131712 -A
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         2845 1 +    138091 -A
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3031402 1 +   3749464 -A
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1      1002386 1 -   1842816 -A
i cebCap1.NW_016107745v1    N 0 C 0
s otoGar3.GL873533           30943573 1 +  31380117 T-
i otoGar3.GL873533          C 0 C 0

a score=36865.000000
s hg38.chr15_KI270851v1_alt     68222 6 +    263054 GCCATG
s panPan2.chr15              25804701 6 +  99763055 GCCACG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         7554 6 -    281578 GCCACG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75980324 6 + 121039945 GCCACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8221211 6 + 169600520 GCCACG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170284912 6 - 171882078 GTCACA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1460660 6 +   1584492 GCCATG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7502184 6 +  58131712 GCCACA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         2846 6 +    138091 GCCACG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3031403 6 +   3749464 GCCACG
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1      1002387 6 -   1842816 GCCACG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9384287 6 +  14477005 GCCACG
i aotNan1.NW_018502759v1    N 0 C 0
s otoGar3.GL873533           30943574 6 +  31380117 GCCACA
i otoGar3.GL873533          C 0 C 0

a score=1512043.000000
s hg38.chr15_KI270851v1_alt     68228 251 +    263054 ACCCCATCCCTGCCTTCTTCCTCTGTCCTATGCTAGCAATAAGTAAGTTTCC-CAGCCACAAATAATTATTAGAACCTCCTCCCCATG---------------------------------------TGCCACCTCCAACCACCGCTAGGTATGATACA-GGGGTGGCCCTA-CCCTCTGGAATATACAAAACCTTACACAGACACAATATATACA---------CCGGGGAAGGG------------GG--GCCACCCCAGCAGCCCATGCCTTCGCCTGGTCCACAGTTAGCCCC-ACTGTCCT---GCCTCA------GCTAC
s panPan2.chr15              25804707 250 +  99763055 ACCCCATCCCCGCCTCCTTCCTCTGTCCTATGCTAGCAATAAATAAGTTTCC-CAGCCACAAATAATTATTAGAACCTTCTCCCCACG---------------------------------------TGACAGCTCCAACCTCTGCTAGGTATGATACA-GGGGCAGCCCTA-CCCTCTGGAATATACAAAATGTTACACAGACACAGTATGTACA---------CCGGGGAAGGT------------GG--GCCACCCCAGCAGCCCATGCCCTCGC-TGGTCCACAGTTAGCCCC-ACTTTCCG---GCCTCA------GCTAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         7560 249 -    281578 ACCCCATCCCCGCCTCCTTCCTGTGTCCTATGCTAGCAATAAATAAGTTTCC-CAGCCACAAATAATTATTAGAACCTCCTCCCCATG---------------------------------------TGCCAGCTCCAACCTCTGCTAGGTATGATACA-GGGGCAGCCCTA-CCCTCTGGAATATACAAAATGTTACACAGACACAGTATGTACA---------CCGGGGAAGGT------------GG--GCCACCCCAGCAGCCCATGCCCTCGC-TAGTCCACAGTTAGCCCC-GCTTTCCG---GCCTCA------GCT-C
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75980330 251 + 121039945 ACCCCATCCCCACCTCCTTCCTCTGTCCTATGCTAGCAATAAATAAGTTTCC-CAGTTACAAATAATTATTAGAACCTCCTCCACATG---------------------------------------TGCCAGTTCCAACCTCAGCTAGGTAGGATACA-GGGGCAGCCCTA-CCCTCTGGAATATACAAAACGTTACACAGACACAGTATGTACA---------CCGGAGAAGGG------------GG--GCCACCCCAGCAGCCCATGCCCTCGCCTGGTCCACAGTTAGCCAC-ACTGTCCT---GCCTCA------GCTAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8221217 250 + 169600520 ACCCCATCCCCGCCTCCTTCCTCTGTCCTATGCTAGCAATAAATAAGTTTCC-CAGCCACAAATAATTATTAAAACCTCCTCCCCATG---------------------------------------TGTCAGTTCCAACCTCCACTAGGTCCGATACA-GGGGCGGCCCTA-CCCGCTGGGATATACAAAAGGTTACACAGACAGAATAAGTACA---------CCAGGGAAGGG------------GG---CCACCCCAGCAGCCCGTGCCCTTGCCTGGTCCACAGTTAGCCCC-ACTGTCCT---GCCTCA------GCTAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170284918 250 - 171882078 ACCCCATCCACGCCTCCTTCCTCTGTCCTATGCTAGCAATAAATAAGTTTCC-CAGCCACAAATAATTATTAGAACCTCCTCCCCATG---------------------------------------TGCCAGCTCCAACCTCCGCTACGTCCGATACA-GGGGCGGCCCTA-CCCTCTGGGATCTACAAAATGTTACACAGACACAGTATGTACA---------CCAGGGAAGGG------------GG---CCACGCCCGCAGCCCGTGCCCTCGCCTGGTCCACAGTTAGCCCC-ACTGTCCT---GCCTCA------GCTAC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1460666 251 +   1584492 ACCCCATCTCCGACTCCTTCCTCTGTCGTATGCTAGCAATAAATAAGTTTCC-CAGCCACAAATAATTATTAGAACCTCCTCCCCACA---------------------------------------TGCCAGCTCCAACCACAGCTAGGTACCATACA-GGGGTGGCCTCA-CCCTCTGGAATATACAAAATGTTACACAGACAAAATGTGTACA---------CTGGGGAAGGG------------GG--TCCACGCCAGCAGCCCGTGTCCTCGCCTGGTCCACAGTTAGCCCC-ACTGTCCT---GCCTCA------GCTAC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7502190 251 +  58131712 ACCCCATCCACGCCTCCTTCCTCTGTCCTATGCTAGCAATAAATAAGTTTCC-CAGCCACAAATAATTATTAGAACCTCCTCCCCATG---------------------------------------TGCCAGCTTCAACCTCTGCTAGGTACGATACA-GAGGCGGCCCTA-CCCTCTGGAATCTACAAAACGTTACACAGACACAGTATGTACA---------CCAGGGAAGGG------------GG--CCCACCCCAGCAGCCCGTGCCCTCGCCTGGTCCACAGTTAGCCCC-ACTGTCCT---GCCTCA------GCTAC
i chlSab2.chr26             C 0 I 179
s manLeu1.NW_012101289v1         2852 251 +    138091 ACCCCATCTCCGACTCCTTCCTCTGTCGTATGCTAGCAATAAATAAGTTTCC-CAGCCACAAATAATTATTAGAACCTCCTCCCCACA---------------------------------------TGCCAGCTCCAACCACAGCTAGGTACCATACA-GGGGTGGCCCCA-CCCTCTGGAATATACAAAACGTTACACAGACAAAATATGTACA---------CTGGGGAAGGG------------GG--TCCACGCCAGCAGCCCGTGTCCTCGCCTGGTCCACAGTTAGCCCC-ACTGTCCT---GCCTCA------GCTAC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3031409 250 +   3749464 ACCCCATCCCCGCCTCCTTCCTCTGTCCTATGCTAGCAATAAATAAGTTTCC-CAGCCACAAATAATTATTAGAACCTCCTCCCCATG---------------------------------------TGCCAGCTTCAACCTCTGCTAGGTACGATACA-GGAGCGGCCCTA-CCCTCTGGAATCTACAAAATGTTACACAGACACAGTATGTACA---------CCGGGGAAGGG------------GG---CCACCCCAGCAGCCCCTACCCTCGCCTGGTCCACAGTTAGCCCC-ACTGTCCT---GCCTCA------GCTAC
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1      1002393 253 -   1842816 ACCCCAACCCTGCCTCCTTCCTCTGTCCTCTACCATCAATAAACAAATTTCC-CAGCTGCAAATAATTATTAAAACCTCCTCCCCATG---------------------------------------TGCCAGTTCCAACCTCTGCTAGGTACAAAACAGGGGGCTCCTCTACCCCCCCGGAATATACAACATGTTACACAGATACAATATGTACA---------CTGGGGAATGG------------GG--GTCACCCCAGCAACCCGTGCCCTCACCTGGTCCACAGTTAGCGCC-ACTGTCCT---GCCTCA------GCTGC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9384293 250 +  14477005 ACCCCATCCCCGCCTCCTT-CTCTGTCCTATGCTATCAATAAATAAGTTTCC-CAACCCCAAATAATTATTAGAACCTCCTCCCCATG---------------------------------------TGCCAGCTCCAACCTCTGCTAGGTATGATACAGGGGGCGGCGCTA--CCCCCAGAATATACAAAATGTTACACAGATACAATATATACA---------CTGGGGAAGCA------------GG--GCCACCCCAGTAGCCCGTGCCCTCACCTGTTCTACAGTTAGCCCC-ACTGTCCT---GCCTCA------GCTGC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30943580 283 +  31380117 ACCACCTCCCCACAGCCTTCCTCTCTACTAT-----CAATAAATAAGTTTCC-CAGCCCCAAATAATTATTAGAAACTCCTCCCCATTTTTTTAAAGGTCATCATAGTTCCAGACCCCTTCCCCATCTGCCAGCTCCAACCTCCG----GTATAACAT--GGAGCGGCCCCC--------AGATATACAAAATACTACACAGATACAATATATACAGGCCTATGTCCTGGCCAGGTTGAGTTAGGCCCGG--CCCAGCCCAGCAA-----------AGCTGGACAAGGCGCTGCCCC-ACTGTCCT---GCCCCA------AATCC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5822454 259 -  61074082 ACCCCGTCCCCGCCTCCTTCCTCTGTCCTATGCTATCAATAAATAAGTTTCCTCATCCCCAAATATTTAATAGAACTTCCTCCCCATT---------------------------------------TGCCAGTTCCAACCTCTGCTA----TGATACAGGGGGCTGCCCTA--TCCCCAGAATATACAAAATGTTACACAGGTACAGTATATACA---------CTGGGGAGGGA------------GGCCCCCCCCCCACCAGCTTATGCCTTTGCCTGGCCTG-GGTTAGCCCCAACTGTCCTAAGGCCTGGGAGAGTGCTGC
i canFam3.chr9              N 0 C 0

a score=517739.000000
s hg38.chr15_KI270851v1_alt     68479 123 +    263054 -------------------------------------------CTCTCTGAATAAGAAGATT--GGAGCCCCCACTGAGGGAAAAGTTGCTATGGTGAGAG-------TAAGGAGGCCATG-----------AGG-----CCT-------------------CCTCC-------AAACAAACCAACTCCACC---AGCCTCTGGCTCTTA----------AATAACAAT----A
s panPan2.chr15              25804957 126 +  99763055 -------------------------------------------CTCTCTGAATAAGAAGATG--GGAGCCCCC-CTGAGGGAAAAGTTGCCATGGTGAGAG-------TAAGGGGGGCATC-----------AGG-----CCT-------------------CCTCC-------AAACAAACCAACTCCACC---AGCCTCTGGCTCTTA----------AATAACAATCATCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         7809 122 -    281578 -------------------------------------------CTCTCTGAATAAGAAG-----GGAGCCCCC-CTGAGGGAAACGTTGCCATGGTGAGAG-------TAAGGGGG-CATC-----------AGG-----CCT-------------------CCTCC-------AAACAAACCAACTCCACC---AGCCTCTGGCTCTTA----------AATAACAATCATCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75980581 126 + 121039945 -------------------------------------------CTCTCTGAATAAGACTATT--GGAGCCCCA-CTGAGGGAAAAGTTGCTATGGTGAGAG-------TAACGGGGCCGTC-----------AGG-----CCT-------------------CCTCC-------AAACAAACCAACTCCATC---AGCCTCTGGCTCTTA----------AGTAACAATCATCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8221467 122 + 169600520 -------------------------------------------CTCTCTGAATAAGAAGCTG--GGAGCCTCC-CTGAGGGAAAAGTTGCTATGGTGAGAG-------AAAGGAGGCCATC-----------AGG-----CCT-------------------CCTCC-------AAACAAACCAACTCCACC---AGCCTCTGGCTCTTA----------AATAACAATC----
i rheMac8.chr7              C 0 I 4
s macFas5.chr7              170285168 122 - 171882078 -------------------------------------------CTCTCTGAATAAGAAGCTG--GGAGCCCTG-CTGAGGGAAAAGTTGCTATGGTGAGAG-------AAAGGAGGCCATC-----------AGG-----CCT-------------------CCTCC-------AAACAAACCAACCCCACC---AGCCTCTGGCTCTTA----------AATAACAATC----
i macFas5.chr7              C 0 I 4
s cerAty1.NW_012002601v1      1460917 122 +   1584492 -------------------------------------------CTCTCTGAATAAGAAGCTG--GGAGCCTCC-CTGAGGGAAAAGTTGCTATGGTGAGAG-------AAAGGAGGCCATC-----------AGG-----CCT-------------------CCTCC-------AAACAAACCAACTCCACC---AGCCTCTGGCTCTTA----------AATAACAATC----
i cerAty1.NW_012002601v1    C 0 I 4
s manLeu1.NW_012101289v1         3103 122 +    138091 -------------------------------------------CTCTCTGAATAAGAAGCTG--GGAGCCTCC-CTGAGGGAAAAGTTGCTATGGTGAGAG-------TAATGAGGCCATC-----------AGG-----CCT-------------------CCTCC-------AAACAAACCAACTCCACC---AGCCTCTGGCTCTTA----------AATAACAATC----
i manLeu1.NW_012101289v1    C 0 I 4
s colAng1.NW_012115677v1      3031659 122 +   3749464 -------------------------------------------CTCTCTGAATAAGAAGATG--GGAGCCCCC-CTGAGGGAAAAGTTGCTATGGTGAGAG-------TAAGGAGGCCATC-----------AGA-----CCT-------------------CCTCC-------AAACCAACCAACTCCACC---AGCCTCTGGCTCTTA----------AATAACAATC----
i colAng1.NW_012115677v1    C 0 I 4
s cebCap1.NW_016107745v1      1002646 125 -   1842816 -------------------------------------------CTCTCTGAATAAGAAGATG--GGAG-CCCC-CTGAGGGAAAAGTTGCTTTGGTGAGAG-------GAAGGAGGCCATC-----------AGG-----CCT-------------------CCTCC-------AAACCAACCAACTCCAGC---AGCCTCTGGCTCTTA----------AATAACAACCATCA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9384543 126 +  14477005 -------------------------------------------CTGTCAGTGTAAGAAGATG--GGAGCCCCC-CTGAGGGAAAAATTGCTTTGGTGAGAG-------TAAGGAGGCCATT-----------AGG-----CCT-------------------CCTCC-------AAACAAGCCAATTCTATA---AGCGTCTGGCTCTTA----------AATAACAATATTCA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30943863 146 +  31380117 -------------------------------------------CTCTTAGAGAGGATAGATG--G-------C-CTGAGGGAAGGACTGCTTTGGGGTAAGGGGGCACTAAGGAGCCCTTTCTTGTTCCCAGAGG-----CAG-------------------CTTCCTTAAAAAAAAGAAAATAAATTTATA---AGCCTCTGGCTTTGA-TTTCTCTACAGCaaaa-------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5822713 197 -  61074082 CCAGTCATTGAGCTGGACAGGGGGAGCACTTGTTCCCCAAAGTGCCTCTGAAT-AGAGGATGCCTGAGCCCCT-CTGAAGGA----CTGCT-TGGTGGGGG-------TGAGGAGGCCACC-----------AGGGAGCCCCTGCCCCCCAAGAAAGGGAGCCCTCT-------AAATAAACTATGTTTTTATTGAGCCTCTGGCTCTTTGTTTTTCTGGAACGATGAG-----
i canFam3.chr9              C 0 C 0
e chlSab2.chr26               7502441 179 +  58131712 I

a score=84983.000000
s hg38.chr15_KI270851v1_alt     68602 14 +    263054 TCATCCAGAAATTT
s panPan2.chr15              25805083 14 +  99763055 TCATCCAGAAATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         7931 14 -    281578 TCATCCAGAAATTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75980707 14 + 121039945 TCATCCAGAAATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8221593 14 + 169600520 TCATCCAGAAATTT
i rheMac8.chr7              I 4 C 0
s macFas5.chr7              170285294 14 - 171882078 TCATCCGAAAATTT
i macFas5.chr7              I 4 C 0
s cerAty1.NW_012002601v1      1461043 14 +   1584492 TCATCCAGAAATTT
i cerAty1.NW_012002601v1    I 4 C 0
s chlSab2.chr26               7502620 14 +  58131712 TCATCCGGAAATTT
i chlSab2.chr26             I 179 C 0
s manLeu1.NW_012101289v1         3229 14 +    138091 TCATCCAGAAATTT
i manLeu1.NW_012101289v1    I 4 C 0
s colAng1.NW_012115677v1      3031785 14 +   3749464 GCATCCAGAAATTT
i colAng1.NW_012115677v1    I 4 C 0
s cebCap1.NW_016107745v1      1002771 14 -   1842816 TCATCCAGAAATTT
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9384669 14 +  14477005 TCATCCAGAAATTT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30944009 14 +  31380117 taattaaaaaattt
i otoGar3.GL873533          C 0 I 3659
s canFam3.chr9                5822910 10 -  61074082 TAGTCCAGAT----
i canFam3.chr9              C 0 C 0

a score=17749.000000
s hg38.chr15_KI270851v1_alt     68616 3 +    263054 AAG
s panPan2.chr15              25805097 3 +  99763055 AGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         7945 3 -    281578 AGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75980721 3 + 121039945 AAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8221607 3 + 169600520 AAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170285308 3 - 171882078 AAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1461057 3 +   1584492 AAG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7502634 3 +  58131712 AAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         3243 3 +    138091 AAG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3031799 3 +   3749464 AAG
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1      1002785 3 -   1842816 AAG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9384683 3 +  14477005 AAG
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9                5822920 3 -  61074082 AAA
i canFam3.chr9              C 0 C 0
e otoGar3.GL873533           30944023 3659 +  31380117 I

a score=249774.000000
s hg38.chr15_KI270851v1_alt     68619 33 +    263054 GACTCAGCTCTGGTCAAGGTGGCAAAGGGTCTG
s panPan2.chr15              25805100 33 +  99763055 GACTCAGCCCTGGTCAAGCTGGCAAAGGGTCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         7948 32 -    281578 GACTCAGCCCTGGTCAGGGTGGCAAA-GGTCTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75980724 33 + 121039945 GACTCAGCCCTGGTCAAGGTGGCAAAGGGTCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8221610 33 + 169600520 GACTCAGCCCTGGTCAAGGTGGCAAAGGGTCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170285311 33 - 171882078 GACTCAGCCCTGATCAAGGTGGCAAAGGGTCTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1461060 33 +   1584492 GACTCAGCCCTGGTCAAGGTGGCAAAGGGTCTG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7502637 33 +  58131712 GACTCAGCCCTGGTCAAGGTGGCAAAGGGTCTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         3246 33 +    138091 GACTCAGCCCTGGTCAAGGTGGCAAAGGGTCTG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3031802 33 +   3749464 GACTCAGCCCTGGTCAAGGTGGCAAAGGGTCTG
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1      1002788 33 -   1842816 GACTCAGCCCTGGTCAAGGTGGCAAAGGGTCTG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9384686 33 +  14477005 GAATCAGCCCTGGCCAAGGTGGCAAAGGGTCTG
i aotNan1.NW_018502759v1    C 0 I 621
s otoGar3.GL873533           30947682 33 +  31380117 GATTTAGTCCTGGTCTAGATGGCAAAAGGTCTG
i otoGar3.GL873533          I 3659 I 6
s canFam3.chr9                5822923 33 -  61074082 GACACAGCCCTTGCCAAGGTGGCAAGAGGTCTG
i canFam3.chr9              C 0 I 6

a score=236058.000000
s hg38.chr15_KI270851v1_alt     68652 46 +    263054 TTTGTCTTTCCTCGTTAGA-------------------CAGTGGTCTTGTCTTGCTACCCTAATT
s panPan2.chr15              25805133 46 +  99763055 TTTGTCTTTCCCCATTAGA-------------------CAGAGGTCTTGTGCTGCTACCCTAATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         7980 46 -    281578 TTTGTCTTTCCCCATTAGA-------------------CAGAGGTCTTGTCCTGCTACCCTAATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75980757 46 + 121039945 TTTGTCTTTCCCCATTAGA-------------------CAGAGGTCTTGTCTTGCTATCCAAATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8221643 46 + 169600520 TTTGTCTTTCCGCATTAGA-------------------CAGAGGTCTTGTCTTGCTACCCTAATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170285344 45 - 171882078 TTTGTCTTTCCCCATT-GA-------------------CAGAGGTCTTGTCTTGCTACCCTAATT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1461093 46 +   1584492 TTTGTCTTTCCACATTAGA-------------------CAGAGGTCTTGTCTTGCTACCTTAATT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7502670 46 +  58131712 TTTGTCTTTCCCCATTAGA-------------------CAGAGGTCTGGTCTTGCTACCCTAATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         3279 46 +    138091 TTTGTCTTTCCGCATTAGA-------------------CAGAGGTCTTGTCTTGCTACCTTAATT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3031835 46 +   3749464 TTTGTCTTTTCCCATTACA-------------------CAGAGGTCTTGTCCTGCTACCCTAATT
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1      1002821 46 -   1842816 TTTGTCTCCCCCCATTAGA-------------------CAGGGCTCTTGTCTTGCTACGCTAACA
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533           30947721 46 +  31380117 CTTATCTTCCCACATCAAA-------------------CAGGGGTCTTATCTTGCTAATCTATGG
i otoGar3.GL873533          I 6 C 0
s canFam3.chr9                5822962 65 -  61074082 TTTGTCTCCCCCAATTAGGAGGCTTTTCACACCCCTCTCAGGGGTCTTATCTTGCTAGTTTAGGG
i canFam3.chr9              I 6 C 0
e aotNan1.NW_018502759v1      9384719 621 +  14477005 I

a score=475529.000000
s hg38.chr15_KI270851v1_alt     68698 83 +    263054 GTAAAGG---GGTGACTGGGAAG--------GGGAGATAGGGACAGTGTGGTGGTGGAGAGACCCCAGCCCCACTTCTCCAGGCTTTGCTGACA
s panPan2.chr15              25805179 81 +  99763055 GTAAAGG---GGTGCCTGGGAAG--------GGGTGGTAGGGACATGGTGGCGGTGGAGA--CTCCAGCCCCACTTCTCCAGGCTTTGCTGACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         8026 81 -    281578 GTAAAGG---GGTGCCTGGGAAG--------GGGTGGTAGGGACATGGTGGCGGTGGAGA--CTCCAGCCCCACTTCTCCAGGCTTTGCTGACA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75980803 80 + 121039945 GTAAAGG---GGTGACTGAGAAG--------GGGAGATAGGGACAT-GTGGTGGTGGAGA--CTCCAGCCCCACTTCTCCAGGCTTTGCTGACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8221689 81 + 169600520 GTAAAGG---GGTGACTGGGAAG--------GGGTGGCAGGGACATGGTGGCGGTGGAGA--CTCCAGCCCAGCTTCTCCAGGGCTTGCTGTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170285389 81 - 171882078 GTAAAGG---GGTGACTGGGAAG--------GGATGGTAGAGACACGGTGGCCGTGGAGA--CTCCAGCCCCGCTTCTCCAGGCTTTGCTGACA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1461139 81 +   1584492 GTAAAGG---GGTGACTGGGAAG--------GGGTGGCAGGGACATGGTGGCGGTGGAGA--CTCCAGCCCCACTTCTCCAGGGCTTGCTGTCA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7502716 81 +  58131712 GTAAAGG---GGTGACTGGGAAG--------GGGTGGCAGGGACATGGTGGCGGTGGAGA--CTCCAGCCCAGCTTCTCCAGGCTTTGTTGACA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         3325 81 +    138091 GTAAAGG---GGTGACTGGAAAG--------GGGTGGCAGGGACATGGTGGCGGTGGAGA--CTCCAGCCCCACTTCTCCAGGGCTTGCTGTCA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3031881 82 +   3749464 GTAAAGGCACGGTGACTGGGAAG--------GGGTGGTAGGGACATGGTGGCGGTG--GA--CTCCAGCCGCACTTCTCCAGGCTTTGCTGACG
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1      1002867 80 -   1842816 ATAAAGG---GGTGACTGGGAAG--------GGGTGGGAGGGACATGGTGGGGGCGGAGA--CTCCAGTCCCA-TTCTCCAGGACTTGCTAACA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9385340 81 +  14477005 GTAAAGG---GGTGACTGGGAAG--------GGATGGTAGGGACATGGTGGGGGCAGGGC--CTCTAGCCCCACTTCTTCAGGCTTTGCTGATA
i aotNan1.NW_018502759v1    I 621 C 0
s otoGar3.GL873533           30947767 68 +  31380117 AGAAAGG---GGTGACTGGGA------------GTGGCAGAGA-----TGGCGTAGGGGC------AGCGCCACTTCTCCACACCTTGTTGACA
i otoGar3.GL873533          C 0 I 47
s canFam3.chr9                5823027 89 -  61074082 ATAAAAG---GGTAACTGGGAAGGAATGATAGGGTGGCAGGGACAGGGTGGGAGCAGAGC--CCCCGGCCCCACTTCTCCAGGTTTTGCTTGCT
i canFam3.chr9              C 0 C 0

a score=32038.000000
s hg38.chr15_KI270851v1_alt     68781 6 +    263054 GGGGCC
s panPan2.chr15              25805260 6 +  99763055 GGGGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         8107 6 -    281578 GGGGCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75980883 6 + 121039945 GGGGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8221770 6 + 169600520 GGGGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170285470 6 - 171882078 GGAACC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1461220 6 +   1584492 GGGGCC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7502797 6 +  58131712 GGAGCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         3406 6 +    138091 GGGGCC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3031963 6 +   3749464 GGAGCC
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1      1002947 6 -   1842816 AGGGCC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9385421 6 +  14477005 GTGGTC
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9                5823116 6 -  61074082 GGTGTC
i canFam3.chr9              C 0 I 9
e otoGar3.GL873533           30947835 47 +  31380117 I

a score=40197.000000
s hg38.chr15_KI270851v1_alt     68787 9 +    263054 TGCTTTTAA
s panPan2.chr15              25805266 9 +  99763055 TCCTTTTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         8113 9 -    281578 TGCTTTTAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75980889 9 + 121039945 TGATTTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8221776 9 + 169600520 TGCTTTTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170285476 9 - 171882078 TGCTTTTCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1461226 9 +   1584492 TGCTTTTAA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7502803 9 +  58131712 TGCTTTTCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         3412 9 +    138091 TGCTTTTAA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3031969 9 +   3749464 TGCTTTTCA
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1      1002953 9 -   1842816 TGCTTTTAT
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9385427 9 +  14477005 AGCTTTTAA
i aotNan1.NW_018502759v1    C 0 I 59
e canFam3.chr9                5823122 9 -  61074082 I
e otoGar3.GL873533           30947835 47 +  31380117 I

a score=-12834.000000
s hg38.chr15_KI270851v1_alt     68796 7 +    263054 ---TTTTAAT
s panPan2.chr15              25805275 6 +  99763055 ---TTTTA-T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         8122 4 -    281578 ---TTTT---
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75980898 1 + 121039945 ---T------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8221785 1 + 169600520 ---T------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170285485 1 - 171882078 ---T------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1461235 1 +   1584492 ---T------
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7502812 1 +  58131712 ---T------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         3421 1 +    138091 ---T------
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3031978 1 +   3749464 ---T------
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1      1002962 4 -   1842816 TTAT------
i cebCap1.NW_016107745v1    C 0 C 0
e canFam3.chr9                5823122 9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I

a score=299311.000000
s hg38.chr15_KI270851v1_alt     68803 83 +    263054 TTTTATTTTTATCCC-ATGCCTTTT-TTTTTAAA--TCCCA-TAACTTCTTTTTCATAA-CTTTTTTTGGTAACTTTTCATAAAACTTT
s panTro5.chr15              70398332 84 -  83230942 tTTTATTTTTATTCC-ATGACTTTT-TTTTAAAAAATCCCG-TAACTTCTTTTTCATAA-CTTTTTTTG-TAACTTTTCATAATACTGT
i panTro5.chr15             N 0 C 0
s panPan2.chr15              25805281 77 +  99763055 TTTTATTT-----CC-ATGAC-TTT-TTTTAAAA--TCCCA-TAACTTCTTTTTCATAA-CTTTTTTTGGTAACTTTTCATAAAACTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         8126 78 -    281578 ---TATTTTTATTCC-ATGAC-TTT-TTAAAAAAAATCCCA-TAACTTCTTTTTCATAA-CTTTTTT---GAACTTTTCATAATACTGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75980899 81 + 121039945 TTTTATTTTTATCCC-ATGAC-TTT-TTTTTAAA--TCCCA-TAACTTCTTTTTCATAA-CTTTTTTTGGTAACTTTTCATAAAA-TTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8221786 79 + 169600520 TTTCATTTTTGTCCC-ATGAC-TTT-----AAAA--TCCCA-TAACTTCTTTTTCGTAAGTTTTTTTTAGTAACTTCCCATAAAACTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170285486 83 - 171882078 TTTTATTTTTATCCC-ATGAC-TTTTATAAAAAA--TCCTG-TTACTTCTTTTTCATAA-CTTGTTTTGGTAATTTTTCATAAAACTTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1461236 79 +   1584492 TTTCATTTTTGTCCC-ATGAC-TTT-----AAAA--TCCCA-TAACTTCTTTTTCGTAAGTTTTTTTTAGTAACTTCCCATAAAACTTT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7502813 83 +  58131712 TTTTATTTTTATCCC-ATGAC-TTT-TTAAAAAA--TCCTGTTAACTTCTTCTTCGTAA-CTTGTTTTGGTAATTTTTCATAAAACTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         3422 79 +    138091 TTTCATTTTTGTCCC-ATGAC-TTT-----AAAA--TCCCA-TAACTTCTTTTTCGTAAGTTTTTTTTAGTAACTTCCCATAAAACTTT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3031979 82 +   3749464 TTTTATTTTTATCTC-ATGAC-TTT-TTAAAAAA--TCCTG-TAACTTCTTTTTCGTAA-CTTTTTTTGGTAATTTTTCATAAAACTTT
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1      1002966 79 -   1842816 TTTTATATTTATCCCTATGATGTTT-TTTTTAAA--TCTCA-TAATTTCCTTTTCATAA-ATTTTAT-----ACTTTTCATAAAATTTT
i cebCap1.NW_016107745v1    C 0 I 17
e canFam3.chr9                5823122  9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I

a score=14732.000000
s hg38.chr15_KI270851v1_alt     68886 23 +    263054 CTTCTAC-TTTTTGGTCACAAGAT
s panTro5.chr15              70398416 22 -  83230942 TTTCTAC-TTTTTTCCCACAAG-T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25805358 22 +  99763055 TTT-TAC-TTTTTGGTCACAAGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         8204 22 -    281578 TTTCTAC-TTTTTTCCCACAAG-T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75980980 22 + 121039945 TTTCTAC-TTTTTTGCCACAAG-T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8221865  7 + 169600520 TTTCTCC-----------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170285569 22 - 171882078 TTTCTAC-TTTTTTGGCAGAAG-T
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1461315  7 +   1584492 TTTCTCC-----------------
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7502896 23 +  58131712 TTCCTACTTTTTTTGCCAGAAG-T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         3501  7 +    138091 TTTCTCC-----------------
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3032061 22 +   3749464 TTTCTCC-TTTTTTGCCAGAAG-T
i colAng1.NW_012115677v1    C 0 C 0
e canFam3.chr9                5823122  9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I
e cebCap1.NW_016107745v1      1003045 17 -   1842816 I

a score=2109905.000000
s hg38.chr15_KI270851v1_alt     68909 443 +    263054 TTTTTTGCCACAACTTTTTTACA-TTTTTTATCCCATAACTTTTTCACCCCATAACTTTTGTTAATCCCATAACTTTTTTA-TTTTGTGTTCTTTTAAT--AAACCCTTGCATAGTTATATTACAATTTTGTAAAAAT-GAAACA--TTATCTCATGCCAAGCATGCTCAGCATTTGCACAGTATCAATACCTTTAATACTATATTTTTCAAGACACACAGAATAAAATTTTAAGG-CAAAAACAGCACTTTGCAACAACTTAATAATTTATTACATTACAGTAGCATCACACCAGCAGTCAATAATgccactttaggcaaaagtctttcagtatttccgttttacattccgcttacaagaattcataaattggtaaaattcattctaagaaaacttggcaaataaagctttggactggaattggcatttctttCTCTACTTTTCCTTCCC
s panTro5.chr15              70398438 446 -  83230942 TTTTTTGCCACAACGTTTTTACA-TTTTTTATCCCATAACTTTTTCACCCCATAACTTTTTTTAATCCCATAACCTTTTAAATCTTGTGTTCTTTTAAG--AAACACTTGCATAGTTATATTACAACTTTGTAAACGT-GAAACACATTATCTCATGCCAAGCATGCCCAGCATTTGCACAGTATCAATACCTTTAATACTATAGTTTTCAAGAAACGCAAAATAAAATTTTAAGG-CAAAAACAACACATTGAAACAACTTAATAATTTATTACATTACAGTGGCATCACACCAGCAGTCAATAAGgccactctagggaaaaatctttcagtatttccatgacacattctgtttacaataattcataaactggtaaaattcattctaagaaaacttggcaaataaaactttggactggaattggcatttctttCTCTGCTTTTCGTTCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25805380 441 +  99763055 TTTTTTGCCACAACTTTTTTACA-TTTTTTATCCCATAAC-TTTTCACCCCATAACTTTTTTTAATCCCATAACTTTTTTA-TTTTGTGTTCTTTTAAT--AAAC-CTTGCATAGTTATATTACAATTTTGTAAAAAT-GAAACA--TTATCTCATGTCAAGCATGCTCAGCATTTGCACAGTATCAATACCTTTAATACTATATTTTTAAAGACACACAGAATAAAATTTTAAGG-CAAAAACAGCACTTTGCAACAACTTAATAATTTATTACATTACAGTAGCATCACACCAGCAGTCAATAATgccactttaggcaaaagtctttcagtatttccgttttacattccgtttacaagaattcataaattggtaaaattcattctaagaaaacttggcaaataaagctttggactggaattggcatttctttCTCTACTTTTCCTTCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         8226 444 -    281578 TTTTTTGCCACAACGTTTTTACA-TTTTTTATCCCATAAT-TTTTCACCCCATAACTTTTTTTAAT-CCATAACCTTTTAAATCTTGTGTTCTTTTGAA--AAACACTTGCATAGTTATATTACAACTTTGTAAAAAT-GAAACACATTATCTCATGCCAAGCATGCCCAGCATTTGCACAGTATCAATACCTTTAATACTATAGTTTTCAAGAAACGCAAAATAAAATTTTAAGG-CAAAAACAACACATTGAAACAATTTAATAATTTATTACATTACAGTGGCATCACACCAGCAGTCAATAAGgccactctagggaaaaatctttcagtatttccatgacacattctgtttacaataattcataaactggtaaaattcattctaagaaaacttggcaaataaaactttggactggaattggcatttctttCTCTGCTTTTCGTTCCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75981002 436 + 121039945 TTTCTTGCCACAACTTTTTTACA-TTTTTTATCCCAAAAATTTTTCACCCTATAACT----TTAATCCCATAACTTTTTTA-TATTGTGTTGTTTTAAT--AAACACTTGCATAGTTGTATTACAATTTTGCAAAAAT-GAAACAGATTATCTCATGCCAAGCATGCCCAGCATTTGCACAGTATCAATACCTTTAATACTATAGTTTTCAAGACATGCAAAATAAAACTTTAAGG-CAAAAACAGCACTTTGCAAC-----AATAATTTATTACATTACAGTAGCATCACACCAGCAGTCAATAATgccactttaggcaaaagtctttcagtatttccattatacagtctgtttacaagaattcataaattggtaaaattcattctaagaaaacttggcaaataaagctttggactggaattcgcatttctttCTCTGCTTTTCCTTCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8221872 440 + 169600520 TTTTTTGCCACAACTTTTTTAC--TTTTTTATCCCATAACTTTGTCACCCCATAA----CTTTAATCCCATAACATTTTA--TTTTGTGTTCTTTTAAT--AAACACCTGCATAGTTATATTACAATTTTATAAAAAT-GAAACAGATTATCTCATGCCAAGCATGCCTAGCATTTGCACAGTATCAATACCTTTAATATTATAGTTTTCAAGACACGCAAAATAAAATTTTAAGGAAAAAAACAGCACTTTGCAACAATTAAATCATTTATTACATTACAGTAGCATCACACCAGCAGTCAATAATgccactttaggcaaaggtctttcagtatttctattatacattctgtttacaagaattcataaattggtaaaattcattctaagaaaacttgacaaataaagctttgggctggaattggcatttctttCTTTGCTTTTTCTTCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170285591 437 - 171882078 TTTTTTGTCACAACTTTTTTACATTTTTTAATCCCATAACTT--TCACCCCATAATTTCTTTTAATCCTGTAAC-TTTCT--TATTTTGTTCTTTTAAT--AAACACTTGCATAGTTATATTGCAGTTTTGTAAAAAT-GAAACCGATTATCTCATGTCAAGCATGCCCAGCATTTGCACACTATCAATACCTTTAATACTACAGTTTTCAAGACACAC-----AAAATTTTAAGG-CAAAAACAGCACTTTGCAACAATTTAAGAATTTATTACATTACAGTAGCATCACACCAGCAGTCCATAATgccactttaggcaaaagtctttcagtatttccattatacattctgtttacaagaattcataaattggtaaaattcattctaagaaaacttggtaaataaagctttggactggaattggcatttcttttTCTACTTTTCCTTGCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1461322 439 +   1584492 TTTTTTGCCACAACTTTTTTAC--TTTTTTATCCCATAACTTTTTCACCCCATAA----CTTTAATCCCATAACATTTTA--TTTTGTGTTCTTTTAAT--AAACACCTGCATAGTTATATTACAATTTTATAAAAAT-GCAACAGATTATCTCATGCCAAGCATGCCCAGCATTTGCACAGTATCAATACCTTTAATATTATAGTTTTCAAGACACGCAAAATAAAATTTTAAGG-AAAAATCAGCACTTTGCAACAATTAAATCATTTATTACATTACAGTAGCATCACACCAGCAGTCAATAgtgccactttaggcaaaagtctttcagtatttctattatacattctgtttacaagaattcataaattggtaaaattcattctaagaaaacttgacaaataaagctttgggctggaattggcatttctttCTTTGCTTTTCCTTCCC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7502919 442 +  58131712 TTTTTTGTCACAATTTTTTTACATTTTTTAATCCCATAAC--TTTCACCCCATAATTTCTTTTAATCCTGTAAC-TTTCT--TATTTTTTTCTTTTAAT--AAACACTTGCATAGTTATATTGCAATTTTGTAAAAAT-GAAACCGATTATCTCATGTCAAGCATGCCCAGCATTTGCACACTATCAGTACCTTTAATACTACAGTTTTCAAGACACACAAAAGAAAATTTTAAGG-CAAAAACAGCACTTTGCAACAACTTAAGAATTTATTACATTACAGTAGCATGACACCAGCAGACAATAATgccactttaggcaaaagtctttcagtatttccattatacattctgtttacaagaattcataaactggtaaaattcattctaagaaaacttggcaaataatgctttggactggaattggcatttctttCTCTACTTTTCCGTCCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         3508 440 +    138091 CTTTTTGCCACAACTTTTTTAC--TTTTTTATCCCATAACTTTTTCACCCCATAA----CTTTAATCCCATAACATTTTA--TTTTGTGTTCTTTTAAT--AAACACCTGCATAGTTATATTACAATTTTATAAAAAT-GAAACAGATTATCTCATGCCAAGCATGCCCAGCATTTGCACAGTATCAATACCTTTAATAATATCGTTTTCAAGACACGCAAAATAAAATTTTAAGGAAAAAAACAGCACTTTGCAACAATTAAATCATTTATTACATTACAGTAGCatcacaccagcagtcaatagtgccactttaggcaaaggtctttcagtatttctattatacattctgtttacaagaattcataaattggtaaaattcattctaagaaaacttgacaaataaagctttgggctggaattggcatttctttCTTTGCTTTTCCTTCCC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3032083 439 +   3749464 TTTTTTGTCAC---TTTTTTACATTTTTTAATCCCATAACTT--TCACCCCATAATTTCTTTTAATCCTGTAAC-TTTCT--TATTTTGTTCTTCTAAT--AAACACTTGCATAGTTATATTGCAGTTTTGTAAAAAT-GAAACTGATTATCTCATGTCAAGCATGCCCAGCATTTGCACACTGTCAATACCTTCAATACTACAGTTTTCAAGACACACAAAAGAAAATTTTAAGG-CAAACACAGCACTTTGCAACAATTTAAGAATTTATTACATTACAGTAGCATCACACCAGCAGTCCATAATgccacgttaggcaaaagtctttcagtatttccattatacattctgtttacaagaattcataaattggtaaaattcattctaagaaaacttggcaaataaagctttggaccggaattggcatttctttCTCTACTTTTCCGTCCC
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1      1003062 408 -   1842816 TTTTTTGCCACAACTTTTCCACA-TTTTTTATCCCATAACTTT--------------------------------TATTA--GTTTGCGTTATTTTAATGAAAACACTTGCATAGCGATATTACAATTTCGTAAAAATAAAAACACATTATCTCATGCCAAGTGTGCCCAGCATTTGCAGAGTCTCCATACCTTTAATACTATAGTTGTCAAGACACAC-----AAAATTTTAAGG-CAAAAACAGCACTTTGCAGCAATTCAATAATTTATTACATTACAGGAGCatcacagcagcagtcaataatgccgttttagacaaaaggc--tcaggatttccatcttacattctgttctcaagagttcatacattggtaaaagtcattcttaggaaacttggcaactaaagcgttggacgggaattagcctttcttTCTCTACTTTTTCTTCCC
i cebCap1.NW_016107745v1    I 17 I 24
e canFam3.chr9                5823122   9 -  61074082 I
e aotNan1.NW_018502759v1      9385436  59 +  14477005 I
e otoGar3.GL873533           30947835  47 +  31380117 I

a score=79692.000000
s hg38.chr15_KI270851v1_alt     69352 23 +    263054 ACCATTTATTTCCTTTA-----CAGTAT
s panTro5.chr15              70398884 28 -  83230942 ACCATTTCTTTCTTTTATACTACAGTAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25805821 23 +  99763055 ACCGTTTATTTCCTTTA-----CAGTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         8670 28 -    281578 ACCATTTCTTTCTTTTATACTACAGTAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75981438 28 + 121039945 AACGTTTCTTTCTTTTAAACTACAGTAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8222312 28 + 169600520 ACCATTTGTTTCTTTTAAACTACAGTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170286028 24 - 171882078 AC----TGTTTCTATTAAACTACAGTAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1461761 28 +   1584492 ACCATTTGCTTCTTTTAAACTACAGTGT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7503361 28 +  58131712 ACCATTTCTTTCTTTGAAGCTACAGTAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         3948 28 +    138091 ACCATTTGCTTCTTTTAAACTACAGTGT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3032522 24 +   3749464 AC----TGTTTCTTTTAAGCTACGGTAT
i colAng1.NW_012115677v1    C 0 C 0
e canFam3.chr9                5823122  9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I
e cebCap1.NW_016107745v1      1003470 24 -   1842816 I

a score=1385596.000000
s hg38.chr15_KI270851v1_alt     69375 314 +    263054 TCATATTTTAAAATGTTTTAACTTATTTCAGAACATTAAGATAGCAGTTACATTGTTTAATAGTTAT-----TTT-AAAATGACTCTTTCAGATAAAGTTTTAGAGAAACTATAGTAT-----GGATAGGGCTGATTTACATTTTCAAATTTTCTAAAAATCAGCTTTGGTTTTAGAGCTGAT-----TTTTGTT---CATTTCTGGAAAACCTATCAGATTTAATCCAATACTTTAAAAATGATTATTATATATTGCACTCTTTAAATCGGTGATTTGATTCTTCCTACAGACATTCAAATTTATTGAATTGAACTCACATTTTAGAATTCT
s panTro5.chr15              70398912 318 -  83230942 TCATATTTTAAAATGTTTTAAATTATTTCAGAACATT--GATAGCAGTTACATTTTTTAATAGTTATATTATTTT-AAAATGACTCTTTAAGATAAAGTTTTAGAGAAACTATATTAT-----GGATAGGGCTGATTTACATTTTCAAATTTTCTAAAA-TCAGCTTTGGTTTTAGAGCTGAT-----TTTTTTTTTTCATTTCTGGAAAAT-TATCAGGTTGAATCAAATACTTTTAAAATGATTATTATATATTGCCATCTTTAAATAGGTGTTTTGATTCTTCCTACAGAAATTAAAATGTATTCAGTGGAACTCACAGTTTAAAATTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25805844 310 +  99763055 TCATATTTTAAAATGTTTTAACTTATTTCAGAACATTAAGATAGCAGTTACATTGTTTAATAGTTAT-----TTT-AAAATGACTC----AGATAAAGTTTTAGAGAAACTATAGTAT-----GGATAGGGCTGATTTACATTTTCAAATTTTCTAAAAATCAGCTTTGGTTTTAGAGCTGAT-----TTTTGTT---CATTTCTGGAAAACCTATCAGATTTAATCCAATACTTTAAAAATGATTATTATATATTGCAATCTTTAAATCGGTGATTTGATTCTTCCTACAGAAATTCAAATTTATTGAATTGAACTCACATTTTAGAATTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         8698 315 -    281578 TCATATTTTAAAATGTTTTAA-TTATTTCAGAACATTAAGATAGCAGTTACATT-TTTAATAGTTATATTATTTT-AAAATGACTC-TTAAGATAAAGTTTTAGAGAAACTATATTAT-----GGATAGGGCTGATTTACATTTTCAAATTTTCTAAAA-TCAGCTTTGGTTTTAGAGCTGAT-----TTTTTTT--TCATTTCTGGAAAAT-TATCAGGTTTAATCAAATACTTTTAAAATGATTATTATATATTGCCATCTTTAAATAGGTGTTTTGATTCTTCCTACAGAAATTAAAATGTATTCAGTGGAACTCACATTTTAAAATTCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75981466 313 + 121039945 TCATATTTTTAAATGTTTTAACTTATTTCAGAACACTAAGATAGCAGTTACATTTTTTAATGGTTATATTATTTT-TAAATGACTA----AGATACACTTTTAGAGAAACTATATTAT-----GTATAGGGCTGATTTACATTTTCAAATTTTCCAAAAATCAGCTTTGGTTTTAGAGCTGAT-----TTTTTTT-TTCATTTCTGGAAAACCTATCAGGTTTAATCAAATACTTTAAAAATGATTATTATATATTGCAATCTTTA----GCTGTTTTGATTATTCCTACAGAAATTCAAATTTATTCAGTTGAACTCACATTTTAAAATTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8222340 318 + 169600520 TCATATTTTAAAATGTTTTAACTTATTTCAGAACATTAAGATAGCAGTTACATTTTTTAATAGTTATATTGTTTTAAAAATGACT-----CTTTAAGATTTTAGACTAACTATATTAT-----GGATAGGGCTGATTTACATTTTCAAA-TTCCTAAAAGTCAGCTTTGGTTTTAGAGCTCAT-TTGTTTTTTTT---CATTTCTGGAAAACCTATCAGGTTTAATCAAATACTTTTAAAATGATTATTATATATTGCAATCTTTAAATAGGTGTTTTGATTCTTCCTACAGAAATTCAAATTTATTCAGTTGAACTCACATTTTAAAATTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170286052 255 - 171882078 TCATATTTTAAAATGTTTTAACTTATTTCAGAACATTAAGATAGCAGTTATATTTTTTAATAGTTATATTATTTT-TAAATGACT----AAGATAAAGTTTTAGAGAAATTATATTAT-----AGGTAGGGCTGGTTTATGTTTTCAAATTTTCTAAAAATCAGCTTTGGTTTTAGAGCTGAT----TTTTTTTT---CATTTCTGGAAAACCTATCAGGTTTAATCAAATACT-------------------------------------------------------------TTAAAATTTATTCAGTTGAACTCACATTTTAAAATTCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1461789 324 +   1584492 TCATATTTTAAAATGTTTTAACTTATTTCAGAACACTAAGAGAGCAGTTACATTTTTTAATAGTTATATTGTTTTAAAAATGACTCTTTAAGATAAGATTTTAGACTAACTATATTAC-----GGATAGGGCTGATTTACATTTTCAAA-TTCCTAAAAGTCAGCTTTGGTTTTAGAGCTCATTTTGGTTTTTTT---CATTTCTGGAAAACCTATCAGGTTTAATCAAATACTTTAAAAATGATTACTATATATTGCAATCTTTAAATAGATGTTTTGATTCTTCCTACAGAAATTCAAATTTATTCAGTTGAAATCACACTGTAAAATTCT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7503389 316 +  58131712 TCATATTTTAAAATGTTTTAACTTATTTCAGAACATTAAGATAGCAGTTGTATTTTTTAATAGTTATATTATTTT-TAAATGAC----TAAGATAAAGTTTTAGAGAAATTATATTAT-----AGATAGGGCTGGTTTATGTTTTCAAATTTTCTAAAAATCAGCTTTGGTTTTAGAGCTGATTT---TTTTTTT---CCTTTCTGGAAAACCTATCAGATTTAATCAAATACTTT-AAAATGATTATTATATATTACAATCTTTAAATAGGTGTTTTGATTCTTCCTACAGAAATTCAGATTTATTCAGTTGAACTCACATTTTAAAATTCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         3976 322 +    138091 TCATATTTTAAAATGTTTTAACTTATTTCAGAACATT--GATAGCAGTTACATTTTTTAATAGTTATATTGTTTTAAAAATGACTCTTTAAGATAAGATTTTAGACTAACTATATTAT-----GGATAGGGTTGATTTACATTTTCAAA-TTCCTAAAAGTCAGCTTTGGTTTTAGAGCTCATTTTGGTTTTTTT---CATTTCTGGAAAACCTATCAGGTTTAATCAAATACTTTAAAAATGATTACTATATATTGCAATCTTTAAATAGATGTTTTGATTCTTCCTACAGAAATTCAAATTTATTCAGTTGAAATCACACTGTAAAATTCT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3032546 305 +   3749464 TCATATTTTAAAATGTTTTAACTTATTTCAGAACATTAAGATAGCAGTTGTATTTTTTAATAGTTATTTT------TAAATGACT----AAGATAAAGTTTTAGAGAAATTATA----------GATAGGGCTGGTTTATGTTTTCAAATTTTCTAAAAATCAGCTTTGGTTTTAGAGCTGAT----TTTTTTTT---CATTTCTGGAAAACCTATCAGGTTTAATCAAATACTTT-AAAATGATTATTATATATTGCAATATTTAAATAGGTGTTTTGATTCTTCCTACAGAAATTCAGATTTATTCAGTTGAACTCACATTTTAAAATTCT
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1      1003494 318 -   1842816 TCATATTTTAAAATGTCTCAG-TAATTTCAAAACATTAAGATAGCAGTTACATGTTTTAATAGTTATCTTG-----AAAATGACTC-TTAAGATAAAGTTTTGGAGAAGCTATTTTATGGATAGGATAGGACTGATTTATATTTTCAAATTTTCTTAAAATCAGCTTTGGTTTCAGAACTGAT-----TTTTATT---CATTTCTGGAAAATCTATCAGTTTTAATGAAATCCTTTAAAAATGATTATCATATATTTTACTCTTTAAATAGGTATTTTGATTCTTCCTACAGAAATTGAAATTTATTCAGTTGAACCCACATTTGAAAATTCT
i cebCap1.NW_016107745v1    I 24 I 892
e canFam3.chr9                5823122   9 -  61074082 I
e aotNan1.NW_018502759v1      9385436  59 +  14477005 I
e otoGar3.GL873533           30947835  47 +  31380117 I

a score=24061.000000
s hg38.chr15_KI270851v1_alt     69689 5 +    263054 --GT-TTC
s panTro5.chr15              70399230 7 -  83230942 ATGT-TTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25806154 5 +  99763055 --GT-TTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         9013 6 -    281578 --ATGTTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75981779 7 + 121039945 ATGT-TTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8222658 7 + 169600520 ATGT-TTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170286307 7 - 171882078 ATGT-TTC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1462113 7 +   1584492 ATGT-TTC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7503705 7 +  58131712 ATGT-TTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         4298 7 +    138091 ATGT-TTC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3032851 7 +   3749464 ATGT-TTC
i colAng1.NW_012115677v1    C 0 C 0
e canFam3.chr9                5823122 9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I
e cebCap1.NW_016107745v1      1003812 892 -   1842816 I

a score=235929.000000
s hg38.chr15_KI270851v1_alt     69694 41 +    263054 TGATGAACTCTAACCTTCCAATGTTGCCTTCTAAGCAAATT
s panTro5.chr15              70399237 41 -  83230942 TGATGAACTCTAACATTCCAATGTTGCCTTCTAAGCAAACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25806159 41 +  99763055 TGATGAACTCTAACCTTCCAATGTTGCCTTCTAAGCAAATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         9019 41 -    281578 TGATGAACTCTAACATTCCAATGTTGCCTTCTAAGCAAACT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75981786 41 + 121039945 TGATGAACTCTAACCTTCCAATGTTGCCTTCTAAGCAAATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8222665 41 + 169600520 TGATGAACTCTAACCTTCCAATGTTGCCTTCTAAGCAAATC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170286314 41 - 171882078 TGATGAACTCTAACCTTCCAATGTTGCCCTCTAAGCAAATT
i macFas5.chr7              C 0 I 303
s cerAty1.NW_012002601v1      1462120 41 +   1584492 TGATGAACTCTAACCTTCCAATGTTGCCTTCTAAGCAAATC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7503712 41 +  58131712 TGATGAACTCTAACCTTCCAATGTTGCCTTCTAAGCAAATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         4305 41 +    138091 TGATGAACTCTAACCTTCCAATGTTGCCTTCTAAGCAAATC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3032858 41 +   3749464 TGATGAACTCTAACCTTCCAATGTTGCCTTCTAAGCAAACC
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1      1004704 41 -   1842816 TGATGAATGCTAACCTTCTGATGTTGCCTTCTAAGCAAATT
i cebCap1.NW_016107745v1    I 892 C 0
e canFam3.chr9                5823122  9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I

a score=507280.000000
s hg38.chr15_KI270851v1_alt     69735 95 +    263054 GAAAGCTGCCTTATACCGAATGAGGAAGAATACCAATACTTGGCTGAATGAGGTATCGCAAAAGAC-TGCATGCACTTTGAAGAAAGACTTAAGTT
s panTro5.chr15              70399278 95 -  83230942 GAAAGCTGCCTTATACTGAATGAGGAAGAGCACAAATGCTCGGCTGAATGAGGTATCGCAAAAGAC-TGCATGCACTTTGGAGAAAGACTTCAGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25806200 95 +  99763055 GAAAGCTGCCTTATACCGAATGAGGAAGAATACAAATACTTGGCTGAATGAGGTATCGCAAAAGAC-TGCATGCACTTTGAAGAAAGACTTAAGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         9060 95 -    281578 GAAAGCTGCCTTATACTGAATGAGGAAGAGCACAAATACTCGGCTGAATGAGGTATCGCAAAAGAC-TGCATGCACTTTGGAGAAAGACTTAAGTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75981827 91 + 121039945 GAAAGCTGCCTTATACTAAATG----AGAGCACAAATACTCGGCTGAATGAGGTATTGCAAAAGAC-GGCATGCACTTTGAAGAAAGACTTAAGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8222706 95 + 169600520 GAAAGCTGCCTTACACTGAATGAGGAAGAGCACAAATACATGGCTGAATGAGGTATCGCAAAAGAC-TGCGTGCACTTTGAAGAAAGACTTAAGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170286658 91 - 171882078 gaaaGCTGCCCTATACTGAATGAGGAAGAGCACAAATACTTGGCTGAATGAGGTATCGCAAAAGAC-TGCGTGCACTTTG----AAGACTTAAGTT
i macFas5.chr7              I 303 C 0
s cerAty1.NW_012002601v1      1462161 95 +   1584492 GAAAGCTGCCTTACACTGAATGAGGAACAGCACAAATACTTGGCTGAATGAGGTATCGCAAAAGAC-TGCGTGCACTTTGAAGAAAGACTTAAGTT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7503753 94 +  58131712 GAAAGCTGCCCTATACTGAATGAGGAAGAGCACAAATACTTGGCTAAATGAGGTATC-CAAAAGAC-TGCGTGCACCTTGAAGAAAGACTTAAGTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         4346 95 +    138091 GAAAGCTGCCTTACACTGAATGAGGAAGAGCACAAATACTTGGCTGAATGAGGTATCGCAAAAGAC-TGCGTGCACTTTGAAGAAAGACTTAAGTT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3032899 95 +   3749464 GAAAGCTGCCTGACACTGAATGAGGAAGAGCACAAATACTTGGCTGAATGAGGTATCGCAAAAGAC-TGCGTGCACTTTGAAGAAAGACTTAGGTT
i colAng1.NW_012115677v1    C 0 I 1
s cebCap1.NW_016107745v1      1004745 96 -   1842816 GAAAGCTGCCTTCTACTGAATGAGGAAGAGAACAAATACTTGGCTGAATGAAGTACTGCAAAAGACTTGCATGCACTTTGAAGAAAGACTTAAGTC
i cebCap1.NW_016107745v1    C 0 C 0
e canFam3.chr9                5823122  9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I

a score=793466.000000
s hg38.chr15_KI270851v1_alt     69830 189 +    263054 ATAGTCATGCGATTTCCATTCTTTTTAGCTTTTTCTTAAATATACGAC-AAATATCTACACAAAGAGTGGTATTTCTGTTAATACAGTCAATTTATTTTCCAGATTGACATTCAGCTTAAATATGCCAGTATGTGATTTAATCCATAGGCACCTGATGAACACATTATTG-TCAGATTGGTTACAGATGCT
s panTro5.chr15              70399373 189 -  83230942 ATTGTCGTACAATTTCCATTCTTTTTAGCTTTTTCTTAAATATATGAC-AAATGCCTACACAAAGAGTGGTATTTCAGTCAATATAGTAAATTCATTTTCCAGACTGACCTTCAGCTTAAATATGCCAGTGTGTGATTTAATCCATAGGCACCTCATGAACACATTATTG-TCAGATTGGTTACAGATGCT
i panTro5.chr15             C 0 I 213
s panPan2.chr15              25806295 189 +  99763055 ATAGTCATGCGATTTCCATTCTTTTTAGCTTTTTCTTAAATATACGAC-AAATATCTACACAAAGAGTGGTATTTCTGTTAATGCAGTCAATTTATTTTCCAGATTGACATTCAGCTTAAATATGCCAGTATGTGATTTAATCCATAGGCACCTGATGAACACATTATTG-TCAGATTGGTTACAGATGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         9155 189 -    281578 ATTGTCATACAATTTCCATTCTTTTTAGCTTTTTCTTAAATATATGAC-AAATGCCTACACAAAGAGTGGTATTTCAGTCAATATAGTAAATTCATTTTCCAGACTGACCTTCAGCTTAAATATGCCAGTGTGTGATTTAATCCATAGGCACCTCATGAACACATTATTG-TCAGATTGGTTACAGATGCT
i gorGor5.CYUI01000141v1    C 0 I 213
s nomLeu3.chr6               75981918 190 + 121039945 ATTGTCATACAATTTCCATTCTTTTTAGCTTTTTCTTAAATATATGAC-AAATACCTACACAAAGAGTGGTATTTCAGTTAATATAGTAAACTTATTTTCCAGACTGACATTCAGCTCAAATATGCCAGTATATGATTTAATCCATAGGCACCTGATGAACACATTATTGTTTAGACTGGTTACAGATGGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8222801 189 + 169600520 ATTGTCATATGATTTCCATTCTTTTTAGCTTTTTCTTAAATATATGAC-AAATACCTACACAAAGAGTGGAATTTCAGTTAATACAGTAAATTTATTTTCCAGACGGACATTCAGCTGGAACATGCCGGTGTGTGATTTAACCCATCGGCACCTGATGAACACAGTATGG-TCAGATTGGTCACAGATGCT
i rheMac8.chr7              C 0 I 212
s macFas5.chr7              170286749 188 - 171882078 ACTGTCATACCATTTCCATTCTTTTTAGCTTTTTCTTAAATATATGAC-AAATACCTACACAAAGAGTGGAATTTCAGTTAATCTAGTAAATTTATTTTCCAGACTGACATTCAGCTTAAATATGCCAGTGTGTGA-TTAATCCATAGGCAGCTGAGGAACACAGTATTG-TCAGATTGGTCAGAGATGCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1462256 189 +   1584492 ACTGTCCTACGATTTCCATTCTTTTTAGCTTTTTCTTAAATATATGCC-AAATACCTACACAAATAGTGGAATTTCAGTTAATACAGTAAATTTATTTTCCAGACGGACATTCAGCTGAAATACGCCAGCGTGTGATTTAACCCATCGGCACCTGATGAACACAGTATGG-TCAGATTAGTCACAGATGCT
i cerAty1.NW_012002601v1    C 0 I 212
s chlSab2.chr26               7503847 188 +  58131712 ACTGTCATATGATTTCCATTCTTTTTGGCTTTTTCTTAAATATATGAC-AAATACCTACACAAAGAGTGGAATTTCAGTTAATCTAGTAAATTTATTTTCCAGACGGACATTCAGCTTAAATATGCCAGTGTGTGA-TTAATCCATAGGCAGCTGATGAACACATTATTG-TCAGATTGGTCACAGATGCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         4441 189 +    138091 ATTGTCCTACGATTTCCATTCTTTTTAGCTTTTTCTTAAATATATGCC-AAATACCTACACAAAGAGTGGAATTTCAGTTAATACAGTAAATTTATTTTCCAGACGGACATTCAGCTGAAATACGCCAGCGTGTGATTTAACCCATCGGCACCTGATGAACACAGTATGG-TCAGATTGGCCACAGACGCT
i manLeu1.NW_012101289v1    C 0 I 212
s cebCap1.NW_016107745v1      1004841 188 -   1842816 ACTGTCATATGATTTCCATTCTTTTTAGTTTTTTCTTAAATAGATGACAAAATACCTACAC--AGAGTGATATTTCAGTTAATATAGTAAATGTATTTTCCAGTCTGACATTCAGCTTAAATATGCCTGTATGTGATTTACTCCATAGGTACTTGATGAACGCATTATTG-TCGGATTGGGTACAGATGCT
i cebCap1.NW_016107745v1    C 0 I 339
e canFam3.chr9                5823122   9 -  61074082 I
e aotNan1.NW_018502759v1      9385436  59 +  14477005 I
e otoGar3.GL873533           30947835  47 +  31380117 I
e colAng1.NW_012115677v1      3032994   1 +   3749464 I

a score=2648.000000
s hg38.chr15_KI270851v1_alt     70019 6 +    263054 CGTAGT
s panPan2.chr15              25806484 6 +  99763055 CGTAAT
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               75982108 6 + 121039945 AGTAAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              170286937 6 - 171882078 AGCAAC
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7504035 6 +  58131712 AGTAAC
i chlSab2.chr26             C 0 C 0
e canFam3.chr9                5823122 9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I
e cebCap1.NW_016107745v1      1005029 339 -   1842816 I
e panTro5.chr15              70399562 213 -  83230942 I
e gorGor5.CYUI01000141v1         9344 213 -    281578 I
e colAng1.NW_012115677v1      3032994 1 +   3749464 I
e manLeu1.NW_012101289v1         4630 212 +    138091 I
e cerAty1.NW_012002601v1      1462445 212 +   1584492 I
e rheMac8.chr7                8222990 212 + 169600520 I

a score=307692.000000
s hg38.chr15_KI270851v1_alt     70025 56 +    263054 TGTCTTTAAACTGAACTCAA-AGAATGCAAAAACATCAAGTTCAGAAAAT-AAAAGGC
s panTro5.chr15              70399775 56 -  83230942 TGTCTTTAAACTGAACTCAA-AGAATGCAAAAGCGGCAAGTTCAGAAAAT-AAAAGGC
i panTro5.chr15             I 213 C 0
s panPan2.chr15              25806490 56 +  99763055 TGTCTTTAAACTGAACTCAA-AGAATGCAAAAACAGCAAGTTCAGAAAAT-AAAAGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         9557 56 -    281578 TGTCTTTAAACTGAACTCAA-AGAATGCAAAAGCGGCAAGTTCAGAAAAT-AAAAGGC
i gorGor5.CYUI01000141v1    I 213 C 0
s nomLeu3.chr6               75982114 56 + 121039945 CGTCTTTAAACTGAACTCAA-AGAATGCAAAAGCAGCAAGTTCAGAAAAT-AAAAGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8223202 57 + 169600520 TGTCTTTAAACTGAACTCAA-AGAATGCAAAAGTGGCAAGTTCAGAAAATAAAAAGGC
i rheMac8.chr7              I 212 C 0
s macFas5.chr7              170286943 56 - 171882078 TGTCTTTAAACTGAACTCAG-AGAATGCAAAAGCGGCAAGTTCAGAGAAT-AAAAGGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1462657 56 +   1584492 TGTCTTTAAACTGAACTCAA-AGAATGCAAAAGTGGCAAGTTCAGAAAAT-AAAAGGC
i cerAty1.NW_012002601v1    I 212 C 0
s chlSab2.chr26               7504041 57 +  58131712 TGTCTTTAAACTGAACTCAAGAGAATGCAAAAGCGGCAACTTCAGAAAAT-AAAAGGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         4842 56 +    138091 TGTCTTTAAACTGAACTCAA-AGAATGCAAAAGTGGCAAGTTCAGAAAAT-AAAAGGC
i manLeu1.NW_012101289v1    I 212 C 0
s colAng1.NW_012115677v1      3032995 56 +   3749464 TGTCTTTAAACTGAACTCAA-AGAATGCAAAAGCGGGAAGTTCAGAAAAT-AAAAGGC
i colAng1.NW_012115677v1    I 1 C 0
s cebCap1.NW_016107745v1      1005368 55 -   1842816 TGTCTTTAAACTGAACTCAA-AGAATGCAAAAGTGGCAAGTTCAG-GAAT-AAAACGC
i cebCap1.NW_016107745v1    I 339 C 0
e canFam3.chr9                5823122  9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I

a score=64488.000000
s hg38.chr15_KI270851v1_alt     70081 11 +    263054 AAGGACAGGAC
s panTro5.chr15              70399831 11 -  83230942 GAGAACAGGAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25806546 11 +  99763055 AAGGACAGGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         9613 11 -    281578 GAGAACAGGAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75982170 11 + 121039945 AAGAACAGGAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8223259 11 + 169600520 AAGAACAGGAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170286999 11 - 171882078 AGGAACAGGAC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1462713 11 +   1584492 AAGAACAGGAC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7504098 11 +  58131712 AGGAACAGGAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         4898 11 +    138091 AAGAACAGGAC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3033051 11 +   3749464 AAGAACAGGAC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72422110 11 - 132174527 AAAGACAGTAC
i calJac3.chr10             N 0 I 1
s cebCap1.NW_016107745v1      1005423 10 -   1842816 -AAAACAGAAC
i cebCap1.NW_016107745v1    C 0 C 0
e canFam3.chr9                5823122  9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I

a score=63558.000000
s hg38.chr15_KI270851v1_alt     70092 11 +    263054 TTTAAGTGCAT
s panTro5.chr15              70399842 11 -  83230942 TTTAAGTGCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25806557 11 +  99763055 TTTAAGTGCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         9624 11 -    281578 TTTAAGTGCAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75982181 11 + 121039945 TTTAAGTGCAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              170287010 11 - 171882078 TGTGAGTCCAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1462724 11 +   1584492 TTTAAGTCCAT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7504109 11 +  58131712 TGTGAGTCCAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         4909 11 +    138091 TTTAAGTCCAT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3033062 11 +   3749464 TTTAAGTGCAT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72422122 11 - 132174527 TTTAAGTCCAT
i calJac3.chr10             I 1 C 0
s saiBol1.JH378108           49804289 11 +  54856640 TTTAAGTCCAT
i saiBol1.JH378108          N 0 C 0
s cebCap1.NW_016107745v1      1005433 11 -   1842816 TTTAAGTCCAT
i cebCap1.NW_016107745v1    C 0 C 0
e canFam3.chr9                5823122  9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I
e rheMac8.chr7                8223270  0 + 169600520 C

a score=2786205.000000
s hg38.chr15_KI270851v1_alt     70103 599 +    263054 TTTAAA-GCCACGGGCTAGAAATCGTACCACTGTTAACTAGCCGCATTATTTGGTCTAACATTTTTT-CTTTATCATTCTGAAACTGGGTTTATCTAATACATTGATACATTCATACAATTTGGTAGAGTCCGTTGAAGTCACAAGGACCCGATATTTGCACTCTTTCAGTGATTGCCGGCAAATCTGTTATTCCATCGGCAAAATCGTACTGCTGCTCTCCTGTT--AATGTCGTATTTATAAAAGTATCATGAGGATGCCAAATGCTAAAAATGGAGATGGTCTAGTAACTAGAAATCCCCACCCCAGGGAGCACACATACATATCTCCCTACATCCTAAT-AATGTGATGTGTTTTGGAACACAGACATTAGAACTTCATGAAGTTTTAACTGTTGAGTCTTTCCCAAGCATCATCAAGTTATGATTTAGGCAATGTACAACTGAAATTCATTCATTCATCATGCATAGGCACAATCACATAAATACTGCACAAAATATGCCCGTAAGTGAAACCCAGAGGTA------------CAGAAACACATTTCACTCTTCACAAAGAAGTTTGTGAGGAAATATAACTCTGTGATTGTATAGACATGTTTCCTG-----ATA
s panTro5.chr15              70399853 597 -  83230942 TTTAAA-CCCACGGGCTAGAAATCGGACCACTGTTAATTAGCCGCATTATTTGGTCTAACATTTTTT-CTTTATCATTCTGAAACTGGGTTTATCTAATACACTGATACATTCATAAAATTTGGAAGAGTCAGTTGAAGTCACAAGGACCGAATATTTGCACTCTTTCAGTGAATGCCAGCAAATCTGTTATTCCATCGGTAAAATCGTATTGTTGCTCTCCTGTT--AATGTCATATTTACAGAAGTATCATGAGGATGCCAAATGCTAAAAATGGAGATGATCTAGTAACTAGAAATCCCCACCGCAGGGAGCACACATACCTATCTCCCTGCATCCTAAC-AATGTGATGTGTTTTGGAACACAGACATTAGAACTTCATGAAGTTTTAACTGTTGAGTCTTTCCCAAGCATCATCAAGTTACGATTTAGGCAATATATAACTAAAGTGCATTCATTCACCATGCATAGGCACAATCACATAAATATTGCACAAAATATGTCCCTAACAGAAACCCAGAGGTA------------CAAAAACATATTTCACTTT--GTAAAGAAGTTTGTGAGAAAATATAACTCTGTGATTGTATAGACACGTTTCCTG-----ATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25806568 597 +  99763055 TTTAAA-GCCACGGGCTAGAAATCGTACCACTGTTAATTAGCCGCATTATTTGGTCTAACATTTTTT-CTTTATCATTCTGAAACTGGGTTTATCTAATACATTGATACATTCATACAATTTGGAAGAGTCCGTTGAAGTCACAAGGACCCGATATTTGCACTCTTTCAGTGATTGCCGGCAAATCTGTTATTCCATTGGCAAAATCATATTGCTGCTCTCCTGTT--AATGTCATATTTATAAAAGTATCATGAGGATGCCAAATGCTAAAAATGGAGATGGTCTAGTAACTAGAAATCCCCACCCCAGGGAGCACACATACATATCTCCCTACATCCTAAT-AATGTGATGTGTTCTGGAACACAGACATTAGAACTTCATGAAGTTTTAACTGTTGAGTCTTTCCCAAGCATCATCAAGTTATGATTTAGGCAATGTACGACTGAAATTCATTCATTCATCATGCATAGGCACAATCACATAAATACTGCACAAAATATGTCCCGAACAGAAACCCAGAGGTA------------CAAAAACATATTTCACTTT--GTAAAGAAGTCTGTGAGAAAATATAACTCTGTGATTGTATAGACACGTTTCCTG-----ATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         9635 601 -    281578 TTTAAA-CCCACGGGCTAGAAATCGTACCACTGTTAATTAGCCGCATTATTTGGTCTAACATTTTTT-CTTTACCATTCTGAAACTGGGTTTATCTAATACATTGATACATTCATAAAATTTGGAAGAGTCAGTTGAAGTCACAAGGACCGAATATTTGCACCCTTTCAGTGAATGCCAGCAAATCTGTTATTCCATCGGTAAAATCGTATTGTTGCTCTCCTGTT--AATGTCATATTTATAGAAGTATCATGAGGATGCCAAATGCTAAAAATGGAGATGATCTAGTAACTAGAAATCCCCACC-CAGGGAGCACACACACCTATCTCCCTGCATCCTAAC-AATGTGATGTGTTTTGGAACACAGACATTAGAACTTCATGAAGTTTTAACTGTTGAGTCTTTCCCAAGCATCATCAAGTTACGATTTAGGCAATATATAACTGAAATGCATTCATTCATCATGCATAGGCACAATCACATAAATATTGCACAAAATATGTCCCTAACAGAAACCCAGAGGTA------------CAAAAACATATTTCACTTT--GTAAAGAAGTCTGTGAGAAAATATAACTCTGTGATTGTATAGACACGTTTCCTGATAATATA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75982192 599 + 121039945 TTTAAA-CCCACAGGCTAGAAACTGTACCACTGATAATTGGCCGCATTATTTGGTCTACCAATTTTT-CTTTATCATTCTGAAACTGGGTTTATCTAACACATTGATACATTCATATAATTTGGAAGAGTCAGTTGAAGTCACAAGGACCGAATATTTGCACTCTTTCAGTGAATGCCAGCAAATCTGTTATTCCATCGGCAGAATCGTATTGCTGCCCTCTTGTT--AACGTCATATTTATAGAAGTATCATGAGGATGCCAGATGCTAAATATGGAGATGGTCTAGTAATTAGAAATCCCCACCCCAGGGAGCACACATACATATCTCCCTACATCCTATT-AATGTGATGTGTTCTGGAATACAGACATTAGAACTTCATGAAGTTTGAACTGTTGAGTCTTTCCCAAGCATCATCAAGTTATGATTTAGGCAATGTCTGACTGAAATGCATTCATTCATCACGCATAGGCACAGTCACATAAATATTGCACAAAACATGTCCCTAACTGAAACCGAGAGGTA------------CAGAAACATATTTCACTCTTTGTAAAGAAGTTTGTAAGAAAATATAACTGTGTGATTGTATAGACACGTTTCCTG-----ATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8223270 595 + 169600520 -TTA---CCCATGGGCTAGAAATCGGACCACTGCTAATTAGCCACATTATTTGGTCTAACATTTTTTACTTTATCATTCTGAAACTGGGCTTATCTAATACATTGATACATTCATACAATTTGGAAGACTCCATTGAAGTCACAACGACCCAATATTTGTGCTCTTTCAGTGAATGCAGGCAAATCTGTTATTCCATCGGTAAAATCGTATT-TTGCTCTCCTGTTAGAATATCATATTTATAAAAGTGTCATAAGGATGCCATATGCTAAAAATGGAGATGGTCTAGTAACTAGAAATCCCCACCCCAGGGAGCACACGTACATATCTCCCTACATCCTAAT-ACTGTGATGTGTTTTGG-ACACAGACATTAGAACCTCATGAGGTTTTAACTGTTGATTCTTTCCCAAGCATCATCAAGTTATGATTTAGGGAATGTGTGACTGAAATTCATTCATTCCTCATGCATAGGCACGATCAAATAAATACTGCACAAAATATGTCCCTAACTGAAACTGAGAGGTA------------CAAAAACATATTTCACTCTTCGTAAAGAAATATGCGAAGAAATATA--CCTGTGATTGTATAGACACGTTACCTC-----GTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170287021 597 - 171882078 TTTAAC-CCCATGGGCCAGAAACCGGACC-CTGTTAATTAGCCACATTATTGGGTCTAACATTTTTT-CTTTATCATTCTGCACCTGGGTTTATCTAATGTATTGATACATTCATACAATTCGGAAGAGTCAGTTGAAGTCACAAGGACCCAATATTTGCGCTCTTTCAGTGAATGCAGGCAAATCTGTTATTCCATCGGTAAAATCCTATTGTTGCTCTCCTGTTAGAATATCATATTTATAAAAGTATCATGAGGATGCCAAATGCTAAAAATGGAGATGGTCTAGTAACTAGAAATCCCCACCCCAGGGAGCACACGTACATATCTCCCCACATCCTAAC-ACTGTGATGTGTTTTGA-ACACAGACATTAGAACCTCATGAAGTTTTAACTGTTGATTCTTTCCCAAGCATCATCAAGCTATGATTTAGGGAATGTGTGACTGAAATTCATTCATTCCTCATGCATAGGCACAATCACATAAATATTGCACAAAATATGTCCCTAACTGAAACCGAGAGGTA------------CAAAAACATATTTCACTCTTCGTAAAGAAGTTTGTGAGGAAATATA--CCTGTGATTGTACAGACACGTTTCCTG-----ATA
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7504120 589 +  58131712 TTTAAA-TCCATGGGCTAGAAATTGGACCAGTGCTAATTAGCCACATTATTGGGTCTAACATTTTTT-CTTTATCATTCTGCACCTGGGTTTATCTAATGTATTGATACATTCATACAATTTGGAAGAGTCAGTTGAAGTCACAAGGACCCAATATTTACAGTCTTTCAGTGAATGCAGGCAAATCTGTTATTCCATCGGTAAAATCATATTGTTGCTCTTCTGTT--AATATCATATTTATAAAAGTATCATGAGGATGCCAAATGCTAAAAATGGAGATGGTCTAGTAACTAGAAACCCCC-CTCCAGGGAGCACATGTACATATCCTCCTACATCCTAAT-ACTGTGATGTGTTTTGA---AGAGACATTAGAACTTCATGAGGTTTTAACTG----TTCTTTCCCAAGCACCATCAAGTTATGATTTAGGGAATGTGTGACTGAAATTCATTCATTCCTCATGCATAGACACAATCACATAAATATTGCACAAAATATGTCCCTAACTGAAACCAAGAGGTA------------CAAAAACATATTTCACGCTTCGTAAAGAAGTTTGTGAGGAAATATA--CCTGTGATTGTATAGACACGTTTCCTG-----ATA
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3033073 595 +   3749464 TTTAAA-CCCATGGGCTAGAAATTGTACCACTGTTAATTAGTCGCATTAT----TCTAACATTTTTT-CTTTATTATTCTGGAACTGGGCTTATCTAATACATTGATACATTCATACAATTTGGAAGAGTCAGTTGAAGTCACAAGGACCCAATATTTGCGCCCTTTCAGTGAATGCAGGCAAATCTGTTATTCCATCGATAAAATCGTATT-TTGGTCTCCTGTT--ATTGTCATATTTATAAAAGTGTCATGACGATGCCAAATGCTGAAAATGGAGATGGTCTAGTAACTAGAAATCCCCACCCCAGGGAGCACACGTAGATATCTCCCTGTATCCTAATAACTGTGATGTGTTTTGGAACACAGACATTAGAACCTCATGAGGTTTTAACTGTTGAGTCTTTCCCAAGCATCATCAAGTTATGATTTAGGCAATGTGTGACTGCAACTCATTCATTCATCGTGCATAGGCACAATCACATAAATATTGCACAAAATACGTCCCTAACTGAAACCAAGAGGTA------------CTAAAACATATTTCACTCTTCGTAAAGAGGTCTGTGAGGAAATACAACTCTGTGATTGTACAGACACGTTTCTTG-----ATA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72422133 592 - 132174527 TTTAAA--CCTCAGGCTAGAAGCTGTACCGCTGTTCATTAGCCACATTATTTGGTCTAACATTTTTT-CTTGATAATTCTGAAATTGTGTTTCTCTGATACATGGTTAAATTCATACAATTTGGAAGAGTCAGTTGACGTCACCAGGACCCAATATTTGCACTCTTTCAGTGAATGCAGGGAAATCTGTTATTCCATCTGTACAATCATATTATTGCTCTGTTATT--AATGTCATATTTATAAAAGTATCATGAGGAGGCCAAATGCTAAAAATGGAGATGGCCTAGTAACTAGAAATCCCCA-CCCAGGGAGCACACATACATATCTCCCTCCATTCTAAT-TGTGGGACTTATTCTGGAACAAAGACATTAGAATTTCATGAAGTTTTCACTGTTGATTATTTCTCAAGCATCATAAAGTTATGAGTTAGGCCATGTATGACTGAAATA-ATTCAT----GAGGTATAGGCACATTACCATAAATATTGCACAAAATGTGCCTCTAACTGAAACCAAGAGATA------------TAAAAACATACTTCACTCTTTGTAAAGAATTTGGTGAGGAGACAGAACTCTGTGGTTGCATAGACACTTTTCCTG-----ATA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49804300 606 +  54856640 TTTAAA--CCTCAGGCTAGAAATTCTACCACTGTTAATTAGCCACATTATTTGGTCTAACATTTTTT-CTTGATAATTCTGAAACTGGGTTTATCTGCTACATTGATAAATTCGTACAATTTGGAAGAGTCCGTTGAAGTCACCAGGACCCAATATTAGCACTCTTTCAGTGAATGCAGGCAAATCTGTTATTCCATCTGTACAATCATACTATTGCTCTGTTGTT--AATGTCATATTTATAAAAGT---ATGAGGAGGCCCAATGCTAAAAATGGAGACGGTCTAGTAACTGGAAATGCCCACCCCAGGAAGTACACATAGATAGCTCCCTACATCCTAAT-CCTGGGAATTATTTTGGAACAAAGACATTAGAATGTCATGAAGTTTTAATTGTTTATTCTTTCTCAAGCATCATAAAATTATGAATTAGGCTATGTATAGCTGAAATA-ATTCATTCAGAATGTATAGGCACATTACCATAAATATTGTACAAAATATGCCTCTACCTAAAACCAAGAGATATAAAAAGATATTTAAAAACATATTTTACGCTTCGTAAAGAATTTGGGGAGGAGACAGAACTCTGTGATTGCATAGACACTTTTCCTG-----ATA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1005444 583 -   1842816 TTTAAACCCCCCCCCCTAGAAATTGTACCACTGTTAATCTGCCGCATTATTTGGTCTAACAGTTTTC-CTTGATCATTCTGAAACTGCGTTTATCTGATACATTGATAAATTCCTACAACTTGGAAGAGTTAGTTCAAGTCACCAGGACCCAATATTTGCACTCTTTTAGGGAATGCAGGGAAATGTGTTATTCCATCTGTAAAATCGTATTAATGATCTCCTATT--AATGTCATATTTATGAAAGTATCATGAGGATGCCAAATGCTAAACATGGAGATGGTC-AGTAACTAGGAATCTCCACTTCAGGGAGCA---------------CTCCATCCTAAC-AATGGGACGTATTTTGGCACACAGACATTAGAACTTCATGAAGCTTCAACTGTTGATTCTGTCCCAAGCATCATAAAGTTATGATTTAGGCAATGTCTGACTGAAAGA-ATTCATTCATAATGTAGAGGCACATTAACAGAAATCTTGCACAAAATATGCCTCTAACTGAAACCGAAAGATA------------TCAAAACATATTTCACTCTTGGTAAAGAACTTGGTGAGGAAATAAAACTCTGTGATTGTACAGACACTTTTCCTG-----ATA
i cebCap1.NW_016107745v1    C 0 C 0
e canFam3.chr9                5823122   9 -  61074082 I
e aotNan1.NW_018502759v1      9385436  59 +  14477005 I
e otoGar3.GL873533           30947835  47 +  31380117 I
e manLeu1.NW_012101289v1         4920   0 +    138091 C
e cerAty1.NW_012002601v1      1462735   0 +   1584492 C

a score=1567492.000000
s hg38.chr15_KI270851v1_alt     70702 381 +    263054 ATACACTGACATTCACCAACAGTAGATTGCACTGCAGTTTGTACACATTTTAAGTTGCATAAACTTCTCCTTGATTTTCAAAGATAGTATAATACTGTCTACTAAAACTCCTTTTTGTTTCAACTAAGCACTCTCA-CATATATTAGTTTATAACAATGTTT---ATTATT-------------------ATTTCAAAGTGTTTTCCATTCAA-GGAAAAGAAGTCAATTCCTATGTCAAAGTAACCAAGGTGG----TTGAAGAATA-------GGCAGAGTGGTCTAGATGGTAAAATCAATCTTCAAGCCTCAAAGAAGCTCCATGAACAGAG--GAATGCCAGGTGTCACACAGCTTTCCTTCACTCTAATTCATTCTTGACTAGAGCCTGTATGCGTGTTCCAGGGACATTTA
s panTro5.chr15              70400450 391 -  83230942 ATACATTGACATTCACGAACAGTAGATTGCACTGCAGTTTGTACACATTTTAAGTTTCATAAACTTCTCCTTGATTTTCAAAGATAGTATAATACCATCTACTAAAACTCCTTTTTGTTTCAACTAAGTA-TCTCA-CATATATTAGTTTATAATCATGTTT-CTATTATT--------------------TTTTAAAGTGTTTTCCATTCAAAGGAAAAGAAGTAAATTCCTATGTCAGAGTAACCAAGGTGG----TTGAAGAATATGTATTAGCCAAAGAGGTCTAGATGGTAAAATCAATCTTCAAGCCTCAAAGAATCTCCATGAACAGAGAGGAATGCCAGGTGGCACACAGCTTTCCTTCACTCTAATTCATTCTTGACTAGAGCCTGTATGCCTGTTCCAGGGACATTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25807165 388 +  99763055 ATACATTGACATTCACGAACAGTAGATTGCACTGCAGTTTGTACACATTTTAAGTTTCATAAACTTCTCCTTGATTTTCAAAGAGAGTATAATACCATCTACTAAAACTCCTTTTTGTTTCAACTAAGTAGTCTCACCATATATTAGTTTATAATAATGTTC--TATTAT---------------------TTTTAAAGTGTTTTCCATTCAA-GGAAAAGAAGTAAATTCCTATGTCAGAGTAACCAAGGTGG----TTGAAGAATAGGTATTAGGCAGAGTGGTCTAGATGGTAAAATCAATCTTCAAGCCTCAAAGAAGCTCCATGAACAGAG--GAATGCCAGGTGTCACACAGCTTTCCTTCACTCTAATTCATTCTTGACTAGAGCCTGTATGCCTGTTCCAGGGACATTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        10236 389 -    281578 ATACATTGACATTCATGAACAGTAGATTGCACTGCAGTTTGTACACATTTTAAGTTTCATAAACTTCTCCTTGATTTTCAAAGATAGTATAATACCGTCTACTAAAACTCCTTTTTGTTTCAACTAAGTA-TCTCA-CATATATTAGTTTATAATAATGTTT-CTATTAT---------------------TTTTAAAGTGTTTTCCATTCAAGGAAAAAGAAGTAAATTCCTATGTCAGAGTAACCAAGGTGG----TTGAAGAATAGGTATTAGCCA-AGAGGTCTAGATGGTAAAATCAATCTTCAAGCCTCAAAGAATCTCCGTGAACAGAGAGGAATGCCAGGTGTCACACAGCTTTCCTTCACTCTAATTCATTCTTGACTAGAGCCTGTATGCCTGTTCCAGGGACATTTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75982791 392 + 121039945 ATACATTGACATTCACAAACAGTAGATTGCACTGCAGTTTGTAAACATTTTAAGTTGCATAAACTTCTCCTTGATTTTCAAAGATAGTATAATACTGTTTACTAAAACTCCTTTTTGTTTCAACTAAGTACTCTCA-CATGTATTAGTTTATAATAATGTTTGTTATTATT--------------------TTTTAAAGTGTTTTCCATTCAA-GGAAAAGAAGTAAATTCCTATGTCAGAGTAACCAAGGTGG----ATGAAGAATAGGTATTAGCCAGAGAGGTCTAGATGGTAAAATCAATCTTCAAGCCTCAAAGAAGCTCCGTGAACAGAGAGGAATGCCAGGTGTCACACAGCTTTCCTTCACCCTAATTCATTCTTGACTAGAGCCTGTATGCCTGTTCCAGGGACAGTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8223865 387 + 169600520 ATACACTGACATTCACAAACAGTAGATTGCACTGCAGTTTGTAAACATCTTAAGTTGCATAAAGTTCTCCTTGATTTTCAAAGACAGTATAATACTGTCTACTAAAACTCC---TTGTTTCAATTAAGTACTCTCA-CATATATTAATTTATAATAATGTTTGTTATTATT--------------------TTTTAAAGTGTTTTCCATTCAA-GGAAAACAAGTAAATTCCTATGTCAGAGTAACTAAGGTGG----TTGAAGAATAGGTATTAGCCAGAGAGGTCTAGATGGTAAAATCAGTCTTCAAGCCTCAAAGAAGCTCTGTGAACAG--AGGAATGCCAGGTGTCACACAGCTTTCCTTCACTCTAATTCATTCTTGACTAGAGCCTGTATGCCTGTTCCAGGGACATTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170287618 385 - 171882078 ATACACTGACATTCACAAACAGTAGATTGCACTGCAGTTTGTAAACATTTTAAGTTGCATAAACTTCTCCTTGATTTTCAAAGCTAGTATAATACTGTCTACTAAAACTCCTTTTTGTTTCAACTAAGTACTCTCA-CATATATTAGTTTATAATAATGTTTGTTATTAAT--------------------TTTTAAAGTGTTTTCCATTCAA-GGAAAAGAAGTAAATTCCTATGTCAGAGTAACCAAGGTGT----TTGAAGAATAGGTATTAGCCAGAGAGGTCTAGATGGTAAAATCAATCTTCAAGCCTCAAAGAAGCTCTGTGAACAG--AGGAATGCCAGGTGTCACACAGCTTTCCTT-----TAATTCATTCTTGACTAGAGCCTGTATGCCTGTTCCAGGGACATTTA
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7504709 383 +  58131712 ATACACTGACATTCACAAACAGTAGATTGCACTGCAGTTTGTAAACATTTTAAGTTGCATAAACTTCTGCTTGATTTTCAAAGCTAGTATAATACTGTCTACTAAAACTCCTTTTTGTTTCAACTAAGTACTCTCA-CATATATTAGTTTATAATAATGT---TTATTAAT--------------------GTTTAAAGTGTTTTCCATTCAA-GGAAAAGAAGTAAATTCCTATGTCAGAGTAACCAAGGTGT----TTGAAGAATAGGTATTAGCCAG-GAGGTCTAGATGGTAAAATCAATCTTCAAGCCTCAAAGAAGCTCCGTGAACAGAAAGGAATGCCAGGTGTCACACAGCTTTCCTT-----TAATTCATTCTTGACTAGAGCCTGTATGCCTGTTCCAGGGACATTTA
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3033668 391 +   3749464 ATACATTGACATTCACAAACAGTAGATTGCACTGCAGCTTCTAAACATTTTAAGTTTCATAAACTTCTCCTTGATTTTCAAAGATACTATAATACTGTCTACTAAAACTCCTTTTTGTTTCAACTAAGTATTCCCG-CATATATTAGTTTATGATAATGTTTGTTATTATT--------------------TTTCAAAGTGTTTTCCATTCAA-CGAAAAGAAGTAAATTCCTATGTCAAAGTAACTAAGGTGG----TTGAAGAATGGGTATTAGCCAGAGAGGTCTAGATGGTAAAATCAGTCTTCAAGCCTCAAAGAAGCTCCATGAACAGAAAGGAAAGCCAGGTGTCACACAGCTTTTCTTCACTCTAATTCATTCTTGACTAGAGCCTGTATGCCTGTTCCAGGGACA-TTA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72422725 379 - 132174527 AGAGTCTGACGTTCACAAACAGTAGATTGC------------AAACATTTTAAGTC-CATAAACTTCTCCTTGACGTTCAAATATAGTATA---CTGTCTTCTGAAACTCCTTTTTGTTTCAACCAAGTAATCTCA-CGTATATTAGTTTATAATAATGTCTGTGATTCTT---------------------TTTGAAGTGTTTTTTATTCAC-GAAAAAGAAGTCAATTCCTGTGTCAGAGTAACCAATGTGGTTACTTGAAGAATAGGTATTAGCCAGAGAAGTCTGGATAGTCAAATCAATCTTCTAGCCTCAAAGAAGCTTCATGAACACAGAGGAATGCCAGATGTCACTCAGCTTTCCTTTACTCTAATTCATTCTTGACAAAAACTTGCATGCCTGTTTCAGGGACATTTA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1006027 406 -   1842816 ATACGTTGACATTCACAAACAGTAGATGGCACTGCAGTCTATAAACATTTTAAATTGCATAAACTT---CTTGATTTTCAAATATAGTACAATTCTCCCTACTGAGACTCCTTTTTGTTTCAGCCAAGTACTCTCA-CATATATTAGTTTATAATCATGTCTGTGATTATTATATTTTGTTTGTGATTATTGTTTAAAGTCCTTTTTATTGAA-GAAAACGAAGGCAATTCCTATGTCAGAGTAACCAAGGTGG----TTGAAGAATAGGCATTAGCCAGAGAAGTATGGATGGTCAAATCAG---TCCAGCCTCAGAGAAGCTCCATGAACACAGAGGGATGCCAGGTGTCACACGGCTTTCCTGCACTCTAGTCCATTATTGACTACAACCTGTATGCCTGTTCCAGGGACATTTA
i cebCap1.NW_016107745v1    C 0 I 327
e canFam3.chr9                5823122   9 -  61074082 I
e aotNan1.NW_018502759v1      9385436  59 +  14477005 I
e otoGar3.GL873533           30947835  47 +  31380117 I
e manLeu1.NW_012101289v1         4920   0 +    138091 C
e cerAty1.NW_012002601v1      1462735   0 +   1584492 C
e saiBol1.JH378108           49804906   0 +  54856640 C

a score=11592.000000
s hg38.chr15_KI270851v1_alt     71083 3 +    263054 AAC
s panTro5.chr15              70400841 3 -  83230942 AAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25807553 3 +  99763055 AAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        10625 3 -    281578 AGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75983183 3 + 121039945 AAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8224252 3 + 169600520 AAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170288003 3 - 171882078 AAC
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7505092 3 +  58131712 AAC
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3034059 3 +   3749464 AAC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72423104 3 - 132174527 AAC
i calJac3.chr10             C 0 I 78
e canFam3.chr9                5823122 9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I
e cebCap1.NW_016107745v1      1006433 327 -   1842816 I
e manLeu1.NW_012101289v1         4920 0 +    138091 C
e cerAty1.NW_012002601v1      1462735 0 +   1584492 C
e saiBol1.JH378108           49804906 0 +  54856640 C

a score=702721.000000
s hg38.chr15_KI270851v1_alt     71086 166 +    263054 TCTTAAAGGATTTCTTCTGATCTTTACTAAATACATTAAGAAGAATGCCAACCAGTGCCCTTTTGTGTACTGGGACATGCAGTCATGTGATTAAAACAGGTAACATGAACTC-T-GACTTTAAAATATA-----GATACAAATGCTCTAAGCTAGGAAAGGTTTTCCACATCC
s panTro5.chr15              70400844 172 -  83230942 TCGTAAAGGATTTCTTATGATCTTCACTAAATACATTAAGAAGAATGCCAACCAGTGCCCTTTTGTGTACTCGGGCATGTAGTCATGTGATTAAAACAGGTAACATGAACTC-TTGACTTTAAAATGTATTGTAGATACAAATGCTCTAAGCTAGGAAAGGTTTTCCACATCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25807556 166 +  99763055 TCTTAAAGGATTTCTTCTGATCTTTACTAAATACATTAAGAAGAATGCCAACCAGTGCCCTTTTGTGTACTGGGACATGCAGTCATGTGATTAAAACAGGTAACATGAACTC-T-GACTTTAAAATATA-----GATACAAATGCTCTAAGCTAGGAAAGGTTTTCCACATCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        10628 171 -    281578 TCGTAAAGGATTTCTTATGATCTTCACTAAATACATCAAGAAGAATGCCAACCAGTGCCCTTTTGTGTACTGGGGCATGTAGTCATGTGATTAAAACAGGTAACATGAACTC-T-GACTTTAAAATGTATTGTAGATACAAATGCTCTAAGCTAGGAAAGGTTTTCCACATCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75983186 171 + 121039945 TCTTAAAGGATTTCTTATGATGTTCACTAAATACATTAAGAAGAATGCCAACCAGTGCCCTTTTGTGTACTGAGGCATGTAGTCATGTGATTAAAATAGGTAACATGAACTC-T-GACTTTAAAATGTATTATAGATACAAATGCTCTAAGCTAGGAAAGGTTTTCCACATGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8224255 171 + 169600520 TCTTAAAGGATTTCTTATGATCTTTACTAAATACATTAAGAAGAATGCCAGCCAGCGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTAAAACGGGTAACATGAACTC-T-GATTTTCAAATGTATTACAGATACAAATGCTCTAAGCTAGGAAAGGTTTTCCACATCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170288006 171 - 171882078 TCGTAAAGGATTTCTTATGATCTTTACTATATACATTAAGAAGAATGCCAGCCAGCACCCTTTTGTGTACTGGGACATGTAGTCATGTGATTAAAACAGGTAACATGAACTC-T-GATTTTCAAATGTATTACAGATACAAATTCTCTAAGCTAGGAAAGGTTTTCCACATCC
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7505095 171 +  58131712 TCTTAAAGGATTTTTTATGATTTTTACTAAATACATTAAGAAGAATGCCAGCCAGCACCCTTTTGTGAACTGGGACATGTAGTCATGTGATTAAAACAGGTAACATGAACTC-T-GATTTTCAAATGTATTACAGATACAAATTCTCTAAGCTAGGAAATGTTTTCCACATCC
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3034062 172 +   3749464 TCTTAAAGGATTTCTTATGATCTATACTAAATACATTAAGAAGAATGCCAGGCAGCACCCTTTTGTGTACTGGGCGCTATAGTCACGTGATTAAAACAGGTACCATGAACTCTT-AACTTTAAAATGTATTCCAGATACCAGTGCTCTAAGCTAGGAAAGGTTTTCCACATCC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72423185 160 - 132174527 TCTTAAAGGAT---TTATGATCTTTATTAAGTACATT---AAGAATGCAAACCAGAGCCCTTTTGTGTACTGGGACATGTGGTTATGTGGTTAAAACGGGTAACATGAACTC-T-GACTTTAAAATGTATTATAGATATAAATACT-----CTAGGAAAGGTTTTTCACATCT
i calJac3.chr10             I 78 C 0
s cebCap1.NW_016107745v1      1006760 170 -   1842816 TCTTAAAGGATTTCTTATGCTCTTTGCTAA-TACATTAAGAAGAATGCCAACCAGTGCCCTTTTGTGTACTGAGACTTAGAGTCATGTCATTAAAACAGGTAACATAAACTC-T-GACTTTACAATGTATTATAAATATAAATGCTCTAAACTAGGAAAGGTTTTTCACACCT
i cebCap1.NW_016107745v1    I 327 C 0
e canFam3.chr9                5823122   9 -  61074082 I
e aotNan1.NW_018502759v1      9385436  59 +  14477005 I
e otoGar3.GL873533           30947835  47 +  31380117 I
e manLeu1.NW_012101289v1         4920   0 +    138091 C
e cerAty1.NW_012002601v1      1462735   0 +   1584492 C
e saiBol1.JH378108           49804906   0 +  54856640 C

a score=1564233.000000
s hg38.chr15_KI270851v1_alt     71252 334 +    263054 ATAGTCAATGATGGGAACCTTTCATTCCTCAGAAATAAGCCCTTTTTAGGTCATCAAAAAAGAGTACAACTGCTGCAGCTCATGATGCAATATCTTCATGAGCCCAGAGCACATACAAATCCTAAAGGAACTACAATAGTACAGCACTAATTCTTGGCAACAGAACAAATGAAACACACTC---TATCTTGCACATACCTGCCAGAGCAGGCAACTTTCCTCTTCTGTGAAATTTAAAAAGCTCCCCCAAAATGTTATTACTCCCATCACCAATAC------ACAGAAAATGAGGGAAAGGCTGTTTCCAGTTCTCGGCCTTTAAACAACTCTAAATGTCAGT
s panTro5.chr15              70401016 333 -  83230942 ACAGTCAACGATGGGAACCTTTCATTCCTCAGAAATAAGCCCTTTTTAGGTCATCGAAAAAGAGTGCAACTGCTGCAGCTCATGATGCAGTATCTTCATGAGCCCAGAGCACATACAAATCCTAAGGGCACCATCATAATACACCGCTAATTCCTGGCACCGGAACAGATGAAACACACTC---TATCCTGGACATACCTGCCAGAGGAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCTCCCCCAAAAGGTT-TCACTCCCATCGCCAATAC------ACAAAAAATGGAGGAAAGGCTGTTTCCAGTTCTTGGCCTTTAAACAACTCTAAATGTCAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25807722 334 +  99763055 ACAGTCAATGATGGGAACCTTTCATTCCTCAGAAATAAGCCCTTTTTAGGTCATCAAAAAAGAGTACAACCGCTGCAGCTCATGATGCAATATCTTCATGAGCCCAGAGCACATACAAATCCTCAAGGAACTACAATAGTACAGCACTAATTCTTGGCAACAGAACAAATGAAACACACTC---TATCTTGCACATACCTGCCAGAGCAGGCAACTTTCCTCTTCTGTGAAATTTAAAAAGCTCCCCCAGAATGTTATTACTCCCATCACCAATAC------ACAGAAAATGAGGGAAAGGCTGTTTCCAGTTCTCGGCCTTTAAACAACTCTAAATGTCAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        10799 333 -    281578 ACAGTCAATGATGGGAACCTTTCATTCCTCAGAAATAAGCCCTTTTTAGGTCATCGAAAAAGAGTGCAACTGCTGCAGCTCATGATGCAATATCTTCATGAGCCCAGAGCACATACAAATCCTAAGGGCACCACCATAATACACCGCTAATTCCTGGCACCGGAACAGATGAAACACACTC---TATCCTGCACATACCTGCCAGAGGAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCTCCCCCAAAAGGTT-TCACTCCCATCACCAATAC------ACAGAAAATGGAGGAAAGGCTGTTTCCAGTTCTTGGCCTTTAAACAACTCTAAATGTCAGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75983357 340 + 121039945 ACAGTCAATGATGGGAACCTTTCATTCCTCAGAAATCATCCCTTTTTAGGTCATCGAAAAAGAGTACAACTGCTGCAGCTCATGATGCAATATCTTCATGAGCCCAGAGCACATACAAATCCTAAGGAAACCACCATAATACAGCGCTAATTCTTGGCACCGGAACAGATGAAACACACTC---TATCCTGCACATACCTGCCAGAGCAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCTCCCCCAAAAGGTTATGACTCCCATCACCAATACACCAATACAGAAAATGGAGGAAAGGCTGTTTCCAGTTCTCGGCCTTTAAACAACTCTAAATGTCAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8224426 333 + 169600520 ACAGTCAATCATGGGAGCCTTTCATTCCTCAGAAATAATCCCTTTTTAGGTGACGGATAAAGAGTACAACTGCTGCAGCTCGTGATGCAATATCTTCATGAGCCCAGAGCACACACGAATCCTAAGGGAACTGCCATAGTACAGCGCTCGTTCTTGGCACCGGAACAAAGGAAACACACTG---TATCCCGCACATTCCTGCCGGATCAGGCCACTGTCCTCTTCTGTGAGATTTAAAAAGCTTCCCCAAAACGTTATTACTCCCATCACCAGTAC------ACAGAAAATGGGGGAAAGGCTGTTTCCAGTTCTTAGACTTTAACCAACTCT-AATGTCAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170288177 328 - 171882078 ACAGTCAATCATGGGAGCCTTTCATTCCTCAGAAATAATCCCTTTTTAGGTCATCA--GAAGAGTACAACTGCTGCAGCTCCTGATGCAGTATCTTCATGAGCCCAGAGCACACACGAATCCTAAGGGAACTACCATAGTACAGCGCTCATTCTTGGCGCCGGAACAAATGAAACACACTG---TATCCCACACATTCCTGCCGGAGCAGGCCACTGTCCTCTTCTGAGAGATTTTAAAAGCTCCCCCAAAAC---ATTACTCCCATCACCAGTAC------ACAGAAAATGGGGGAAAGGCTGTTTCCAGTTCTCGGACTTTAAACAACTCT-AATGTCAGT
i macFas5.chr7              C 0 I 462
s chlSab2.chr26               7505266 331 +  58131712 ACAGTCAATGATGGGAGCCTTTCATTCCTCAGAAATAATCCCTTTTTAGGTGACAGG-TAAGAGTACAACTGCTGCAGCTCGTGCTGCAATATCTTCATGAGCCCAGAGCAGACACAAATCCTAAGGGAACTGCCATAGTACAGCGCTCATTCTTGGCACCGGAACAAAGGAAACACACTG---TATCCCGCACATACCTGCGGGAGCAGGCCACTGTCCTCTTCTGTGAGATTTAAAAAGCT-CCCCAAAACGTTATTACTCCCATCACCAGTAC------ACAGAAAATGGGGGAAAGGCTGTTTCCAGTTCTCGGACTTTAAACAACTCT-AATGTCAGT
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3034234 334 +   3749464 ACAGTCAACGATGTGAACCCTTCATTCCTCAGAAATAATCCCTTTTTAGGTCATGGAAAAAGAGTACAACTGCTGTAGCTCGTGATGTAATATCTTCATGAGCCCAGAGCACACACAAATCCTAAGGGAACTACCATAGTACAGCGCTCATTCTTGGCACCGGAACCAGTGAAACACACTC---GATCCCGCACATATCTGCCGGAGCAGGCCACTGTCCTCTTCTGTGAGATTTAAAAAGCTCCCCCAAAATGTTATTACTCCCATCACCAGTAC------ACAGAAAATGGGGGAAAGGCTGTTTCTAGTTCTCGGCCTTTAAACAACTCTAAATATCAGT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72423345 332 - 132174527 ACAGTCAACGATAGGAGCCTTTGATTCCTCAGAAATCATCCCTTTTTAGGTCATTGAAAATGAGTACAGCTGCTGCAGCTCCTGATGCAATATCTTCATGAGCCCAGAGCACAGAAAAATCCTAAGGGAACTACCATAGTACAGTGCTCATTCTTGGCTTGGGAACCAATAACGCTTACTCTGTTATTCTACACATACCTGCCAGAGCA-GCCACTT---TCTTCTGTGAGATTTAAAAAGCT-CCGCAAAATGTTATTACTCCCATCCCAAAGAC------ACTGAAAACAGGGGAAAGGCTGTTTCCAGTTCTCGGCCTTTCAGCAACTCTAAATGTCAGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49804906 333 +  54856640 ATAGTCAACAGTAGGAGCCTTTGATTCCTGAGAAATCATCCCTTTGTAGGTCATTGAAAATGAGTACAGCTGCTGCAGCTCATGATGCAATATCTTCATGAGCCCAGAGAACAGGAAAACCCTAAGGGAACTACCATAGTACAGTGCTCATTCTTGGCTGGGGAACCAATGAAGCACACTCTATTATTCTGCACACACCTGCCAGAGTAGGCCACTT---TCTCCTGTGAGATTTAAAAAGCT-CCCCAAAATGTTATTACTCCCATCCCAAAGAC------ACAGAAAACAGGGGAAAGGCTGTTTTCAGTTCTGGGCCTCTCAGCAACTCTAAATGTCAGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1006930 328 -   1842816 ACAGTCAAAGATGGGAACCTTTTATTCCT-AGAAATCACCCTTTTTTAGGTCATCAAAAAAGAGTGCAGCTGCCGCGGCTCATGATACAGTATCTTCATGAGCCCAGAGCACAGAGGAACCCTAAAAGAACTGCCAT-GCACAGCGCTCGTTCTTGGCATGGGAATGACTGAA--ATACTC---TATTCTGCACATACCTGCCAGAGCAGGCCACTTTCCTCTTCTGTGAGATTTTAAAAGCT-CCCCAAAATGTTATTACTCCATTTGCAATG-C------ACAGAAAATGGAAGAAAGGCTGTTTCCAGTTCTCGGCTTTTCAACAACTCTAGATGTCAGT
i cebCap1.NW_016107745v1    C 0 C 0
e canFam3.chr9                5823122   9 -  61074082 I
e aotNan1.NW_018502759v1      9385436  59 +  14477005 I
e otoGar3.GL873533           30947835  47 +  31380117 I
e manLeu1.NW_012101289v1         4920   0 +    138091 C
e cerAty1.NW_012002601v1      1462735   0 +   1584492 C

a score=25212.000000
s hg38.chr15_KI270851v1_alt     71586 4 +    263054 ACTC
s panTro5.chr15              70401349 4 -  83230942 ACTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25808056 4 +  99763055 ACTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        11132 4 -    281578 ACTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75983697 4 + 121039945 ACTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8224759 4 + 169600520 ACTC
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              170288967 4 - 171882078 aCTC
i macFas5.chr7              I 462 I 1
s chlSab2.chr26               7505597 4 +  58131712 ACTC
i chlSab2.chr26             C 0 I 460
s colAng1.NW_012115677v1      3034568 4 +   3749464 ACTC
i colAng1.NW_012115677v1    C 0 I 1
s calJac3.chr10              72423677 4 - 132174527 ACTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49805239 4 +  54856640 ACTC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1007258 4 -   1842816 ACTC
i cebCap1.NW_016107745v1    C 0 C 0
e canFam3.chr9                5823122 9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I
e manLeu1.NW_012101289v1         4920 0 +    138091 C
e cerAty1.NW_012002601v1      1462735 0 +   1584492 C

a score=903.000000
s hg38.chr15_KI270851v1_alt     71590 2 +    263054 TT
s panTro5.chr15              70401353 2 -  83230942 AT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25808060 2 +  99763055 TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        11136 2 -    281578 AT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75983701 2 + 121039945 AT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8224764 1 + 169600520 -C
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              170288972 1 - 171882078 -C
i macFas5.chr7              I 1 C 0
s colAng1.NW_012115677v1      3034573 1 +   3749464 -C
i colAng1.NW_012115677v1    I 1 C 0
s calJac3.chr10              72423681 2 - 132174527 AT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49805243 2 +  54856640 AC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1007262 2 -   1842816 AT
i cebCap1.NW_016107745v1    C 0 C 0
e canFam3.chr9                5823122 9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I
e manLeu1.NW_012101289v1         4920 0 +    138091 C
e cerAty1.NW_012002601v1      1462735 0 +   1584492 C
e chlSab2.chr26               7505601 460 +  58131712 I

a score=1050694.000000
s hg38.chr15_KI270851v1_alt     71592 225 +    263054 GGTGGC--ATATTACAAAGTATTAAATAGTGCACACTTGGGG-CAAACCACATATTGTGCTAATGAAGAGCTCACTGTGATTAAGATTAGATCAAAC--AATAGCAGAACATAGGCAAATTTTATCTGAATTCTGTAATGAATATACATGCTGCAATAACATTAAAAACACATGGCAGCCTATTCCAAACCAGCAAGAATAGTTTTGTGCAAATAGTGGGTCTTTGTGTG
s panTro5.chr15              70401355 226 -  83230942 AGTGGC--ATATTACAAAGTAATAAACAGTGCACACTTGGGGGCAAACTACATATTGAGCTAACGAAGAGCTCACTGTGATTAAGATTAGATCAAAC--AACAGCAGAACATAGGCAAATTTTGTCTGCATTCTGTAGTGAATATACATGCTGCAATAACATTAAAAAAGCACGGGAGCCTATTCCAAACCAACGAGAACAGTTTTGGGCAAAGAGTGGGTCTTCGTGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25808062 225 +  99763055 GGTGGC--ATATTACAAAGTATTAAATAGTGCACACTTGGGG-CAAACCACATATTGCGCTAATGAAGAGCTCACTGTGATTAAGATTAGATCAAAC--AATAGCAGAACATATGCAAATTTTATCTGAATTCTCTAATGAATATACATGCTGCCATAACATTAAAAACACATGGCAGCCTATTCCAAACCAGCAAGAATAGTTTTGTGCAAATAGTGGGTCTTTGTGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        11138 225 -    281578 -GTGGC--ATATTACAAAGTAATAAACAGTGCACACTTGGGGGCAAACTACATATTGAGCTAACGAAGAGCTCACTGTGATTAAGATTAGATCAAAC--AACAGCAGAACATAGGCAAATTTTGTCTGAATGCTGTAGTGAATATACATGCTGCAATAACATTAAAAAAGCATGGCAGCCTATTCCAAACCAAAGAGAACAGTTTTGGGCAAAGGGTGGGTCTTTGTGTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75983703 226 + 121039945 AGTGGC--ATATTACAAAGTAATAAACAGTGCACACCTGGGGGCAAACCACATATAGAGCTAATGAAGAGCTCACTGTGATTAAGATTAGATCAAAC--AATAGCAGAGTATAAGCAAATTTTATCTGAATTCTGTAATGAATATACATGTGGCAATAACATTAAAAACGCATGGCAGCCTATTCCAAACCATCAAGAATAGTTTTGTGCAAATAGTGGGTCTTTGTGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8224765 227 + 169600520 GGTGGC--ATATTACAAAGTAATCAACAGTGCACACTTGAGGGCAAACCGCATATTGAGCTAATGAAGGGCTCACTGTGATTAAGATTAAATCAAACATAATAGCAGAACATAAGCAAATTTTATCTGAATTCTGTAATGAACATACATGCTGCAATAACATTAAAAAAGCATGGCAGCCTATTCCAAA-CAGTAAGAATAGTTTTGTGCAAATAGTGGGTCTTTGTGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170288973 225 - 171882078 GGTGGC--ATATTACAAAGTAATCAACAGTG-ACACTTGCAGGTAAACCACATATTGAGCTAATGAAGAGCTCACTGTGATTAAGATTACATCAAAC--AATAGCAGAACATAAGCAAATTTTATCTGAATTCTGTAATGAACATAGATGCTGCAATAACATTGAAAAAGCAAGGCAGCCTATTCCAAACCAGCGAGAATAGTTTTGTGCAAACAGTGGGTCTTTGTGTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7506061 225 +  58131712 GGTGGC--ATATTACAAAGTAATCAACAGTG-ACACTTGGAGGTAAACCACATATTGAGCTAATGAAGAGCTCACTGTGATTAAGATTAGATCAAAC--AATAGCAGAACATAAGCAAATTTTATCTGAATTCTGTAATGAACATACATGCTGCAATAATATTGAAAAAGCAAGGCAGCGTATTCCAAACCAGTGAGAACAGTTTTGTGCAAACAGTGGGTCTTTGTGTG
i chlSab2.chr26             I 460 C 0
s colAng1.NW_012115677v1      3034574 228 +   3749464 GGTGGCATATATTACAAAGTAATCAACAGTGCACACTTGAGGGCAAACCGCATATTGAGCTAATGAAGAGCTCACTGTGATTAAGATTGGATCAAAC--AGTAGCAGAACACAAGCAAATTTTATCTGAATTCTGTAACGAATATACATGCTGCAATAACATTAGAAAAGCAAGGCAGCCTATTCCAAACCAACAAGAATAGTTTTGTGCAAACAGTGGGTCTTTGTGTG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72423683 222 - 132174527 AGTGGC--ATCTTACAAAGTAACAAAC--TGCACACTTGAGGGCAAACCACATATTGAGCTGACTAAGAGCTCACTGTGATTAGGATGCGATCAACTATGACAGCAGAACAT----AAATTGTATCTGAATTCCGTAGTAAGTATACATGCCGCAGTAACATTGAAAAAGCATGGCATCCTATTCCAAACCAGCAAAAAGAGTTTGGTGCAAAGAGTGGGTCTTTGTGTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49805245 222 +  54856640 AGTGGC--ATCTTACAGAGTAACAAACAGTGCGCACTTGAGGGCAAACCACCTATTGAGCTAAAC-AGAGCTCACTGTGATTAGGATCGGATCAACTGTGATAGCAGAACAT----CAATTGTATCTGAATTCCGTAATAAGCATACATGCGGCAATAACATTTAAGAAGCATGGCATCCTATTCCAAACCAGC-AAAAGAGTTTGGCGCAAAGAGTGGGTCTTTGTGTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1007264 227 -   1842816 AGTGGC--ACCTTACAAGGTAATAAACGGTGTGCACGTGCGGGCAAAGCACATATTGAGCTAATTAAGAGCTCACTGTGAGCAGGATTCCATCAAATATCATAGCAGAACATAAGCAAATTGTATCGGAATTCCATAAAGAATATACATGCTGCAATAACATT-AAAAACCATGGCAGCCTATTCCAAACTAGCGAGAATGGTTTTGTGCCAATAGTGGGTCTTTGTGTG
i cebCap1.NW_016107745v1    C 0 C 0
e canFam3.chr9                5823122   9 -  61074082 I
e aotNan1.NW_018502759v1      9385436  59 +  14477005 I
e otoGar3.GL873533           30947835  47 +  31380117 I
e manLeu1.NW_012101289v1         4920   0 +    138091 C
e cerAty1.NW_012002601v1      1462735   0 +   1584492 C

a score=1178445.000000
s hg38.chr15_KI270851v1_alt     71817 202 +    263054 TTTGAACTCCCACCACGTAAGGGCAAACTCAATATGCATGCTAATAACCTACAATCATGAAATTGAAAAAGAAAATTGCGAAAGTATGCCAGAGTGAACATCAGTGAAAGCC--ACAGAGACCCACTCTCTTTTAACTATTTACAAATAAACTTAAACTATAAATTAGAAACACAAATAATCATAAGTGGCTATAACATTCAAA
s panTro5.chr15              70401581 202 -  83230942 TTTGAACTCCCACCACGTAAGGGCGAACTCGATATGCATGCTAATGACCTACAATTATGAAATTAAAAAAGAAAAATGCTAAAGGATGCCAGAGTGAACATCAGTGAGAGCC--ACAGAGACCCACTCTCTTTTAACTTCTTACAAATAAACTTAAACTATAAATTAGAAACACAAATAATCATGAGTGACTCTAACATTCAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25808287 202 +  99763055 TTTGAACTCCCACCACGTAAGGGCAAACTCGATATGCTTGCTAATGACCTACAATTATGAAATTGAAAAAGAAAATTGCGAAAGGATGCCAGAGTGAACATCAGTGAAAGCC--ACAGAGACCCACTCTCTTTTAACTATTTACAAATAAACTTAAACTATAAATTAGAAACACAAATAATCATAAGTGGCTATAACATTCAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        11363 202 -    281578 TTTGAACTCCCACCACGTAAGGGCAAACTCGATATGCATGCTAATGACCTACAATTATGAAATTAAAAAAGAAAAATGCTAAAGGATGCCAGAGTGAACATCAGTGAGAGCC--ACAGAGACCCACTCTCTTTTAACTTTTTACGAATAAACTTAAACTATAAATTAGAAACACAAATAATCATGAGTGACTCTAACATTCAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75983929 192 + 121039945 TTTGAACTCCCACCATGTAAGGGCAAACTCAATATGCATGCTAATGACCTACAATTATGAAATTGAAAAA------TGCTAAAGGATGCCAGAGTGAACATCAGTGAAAGCC--ACAGAAACCCACTC----TTAACTTTTTACAAATAAACTTAAACTATAAATTAGAAACACAAATAATCATGAGTGGCTGTAACATTCAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8224992 202 + 169600520 TTTGAACTCCCACCACATAACGGCAAACTCGATATACATGCTAATGACCTACAATTATGAAATTAAAACAGAAAAATGCTAAAGGATGCCAGAGTGAACCTCAGTGAAGGCC--ACAGAGACCCACTCTCCTTTAACTTTTTACAAATAAACTTAAACTATAAATTGGAAACAAAAATAATCAAGAGTGGCTCTAACATTCAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289198 184 - 171882078 TTTGAACTCCCACCACGTAACGGCAAACTCAATATACATGCTAATGACCTACAATTATGAAATTAAAACAGAAAAATGCTAAAGGATGCCAGAGTGAACCTCAGTGAAAGGC--ACAGAGACCCACTTT--TTTAACTTTTTACAAATAAACTT-AACTATAAATTAGAAACACAAATAAT---------------CATTCAAA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1462735 201 +   1584492 TTTGAACTCCCACCACGTAAGGGCGAACTCGATATACATGCTAATGACCTACAATTATGAAATTAAAAAAG-AAAATGCTAAAGGATGCCAGAGTGAACGTCAGGGAAGGCC--ACAGAGACCCACTCTCTTTTAACTTTTTACAAATAAACTTAAACTATAAATTAGAAACACAAATAATCAAGAGTGGCTCTAACATTCCAA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7506286 183 +  58131712 TTTGAACTCCCACCACGTAACGGCAAACTCAATATACATGCTAATGACTTACAATTATGAAATTAAAACAGAAAAATGCTAAAGGATGCCAGAGTGAACCTCAGTGAAAG----GCAGAGACCCACT-TTTTTTAACTTTTTACAAATAAACTT-AACTATAAATTAGAAACACAAATAAT---------------CATTCAAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         4920 202 +    138091 TTTGAACTCCCACCACGTAAGGGCAAACTCGATATGCATGCTAATGACCTACAATTATGAAATTAAAAAAGAAAAATGCTAAAGGATGCCAGAGTGAACCTCAGTGAAGGCC--ACAGAGGCCCACTCTTTTTTAACTTTTTACAAATAAACTTAAACTATAAATTAGAAACACAAATAATCAAGAGTGGCTCTAACATTCAAA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3034802 189 +   3749464 TTTGAACTCCCACCACGTAACGGCAAACTCAATATACATGCTAATGACCTACAATTATGAAATTAAAATAGAAA-----------ATGGCAGAGTGAACCTCAGTGAAAGCC--ACAGAGACCCAATCTCTTTTAATTTTTAACAAATAAACTTAAACTACAAATTAGAAAC--AAATAATCAAGAGTAGCTCTAACATTCAAA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72423905 194 - 132174527 TTTGAACTCCCACCACGTAAGGCCGAACTCGATATGCCTGCTATTGACCTCCACTTACCAAGCCA-----GAAAAACGCTAAAGGATGCCAGAGTGAATATCAGAGAAAGCCACACAGAGACCCACTCTACCTTAACTTTTTACAAATAAGTT-----TATAAATGAGAAACACAAATAAGCATGAGTGGCTCTAACGGCCAAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49805467 163 +  54856640 TTTGAACTCCCACCATGTAAGGCCAAACTCGATATGCATGCTATTCACCTACAATTATCAAAACA-----GAAAAATGCTAAA-----------TTAATAATAATTAATGCTAAAC--------------------TTATAAACAAAGAAATG-----TATAAATGAGAAACACAAAGAATCATGAGTGGCTCTAACATCCAGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1007491 198 -   1842816 TTTGAACTCCCACCACATAAGGGCAAACTCGATAGGCATGCTAATGACCTACGATTATCAAATTAAAAATGAAAAACGCTAAAGGATGCCAGAGTGAACATCAGTGAAAGCCACACGAAGACCCACTCTCCTTTAACTTTTTACAAATAAAC------TGTAAATTAGAAACACAAATCATCATGAGTGACTCTAACATTCAAA
i cebCap1.NW_016107745v1    C 0 I 253
e canFam3.chr9                5823122   9 -  61074082 I
e aotNan1.NW_018502759v1      9385436  59 +  14477005 I
e otoGar3.GL873533           30947835  47 +  31380117 I

a score=253733.000000
s hg38.chr15_KI270851v1_alt     72019 51 +    263054 CGAAGTAAATGAATTGTGTAGGAGATTAACCCCATAACTTTGTTTCTTTTT
s panTro5.chr15              70401783 51 -  83230942 GGAAGTAAATGAATTGTGTAGGAGATTAACCCCATAACTTGGTTTCTTATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25808489 48 +  99763055 TGAAGTAAATGAATTGTGT---AGATTAACCCCATAACTTTGTTTCTTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        11565 51 -    281578 GGAAGTAAATGAATTGTGTAGGAGATTAACCCCATAACTTGGTTTCCTATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984121 48 + 121039945 TGAAGTAAATGAATTGTGTAGGAGATTAACCCCATAACTTTGTT---TTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225194 51 + 169600520 TGAAGTAAATGGATTGTGTAGGAGATTCACCCCATAGCTTTGTTTCTTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289382 47 - 171882078 TGAAGGAAATGAATTGTGTAGGAGATTAACCCCGTAAC----TTTCTTTTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1462936 51 +   1584492 TGAAGTAAATGAATTGTGTAGGAGATTAACCCCATAACTTTGTTTCTTTTT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7506469 47 +  58131712 TGAAGGAAATGAATTGTGTAGGAGATTAACCCCGTCAC----TTTCTTTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         5122 51 +    138091 TGAAGTAAATGAATTGTGTAGGAGATTAACCCCATAACTTTGTTTCTTTTT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3034991 51 +   3749464 TGAAGTAAATGGATTGTGTAGGAGATTAACCCCATAACTTTGTTTCTTTTT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424099 48 - 132174527 TAAAGTTAATGAATTGTGT---AGATTAACCCCATAACTTTGTTTTGGTTT
i calJac3.chr10             C 0 I 253
s saiBol1.JH378108           49805630 47 +  54856640 TAAAGTTAACGAATTGTGT---AGATTAACACCA-AAAGTTGTTTTGGTTT
i saiBol1.JH378108          C 0 I 1
e canFam3.chr9                5823122  9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I
e cebCap1.NW_016107745v1      1007689 253 -   1842816 I

a score=228.000000
s hg38.chr15_KI270851v1_alt     72070 1 +    263054 T
s panTro5.chr15              70401834 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25808537 1 +  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        11616 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984169 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225245 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289429 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1462987 1 +   1584492 A
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7506516 1 +  58131712 T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         5173 1 +    138091 A
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035042 1 +   3749464 T
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49805678 1 +  54856640 T
i saiBol1.JH378108          I 1 C 0
e canFam3.chr9                5823122 9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I
e cebCap1.NW_016107745v1      1007689 253 -   1842816 I
e calJac3.chr10              72424147 253 - 132174527 I

a score=84533.000000
s hg38.chr15_KI270851v1_alt     72071 16 +    263054 AAAAATTTCTTGAGCA
s panTro5.chr15              70401835 16 -  83230942 AAAAATTTCTTGAGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25808538 16 +  99763055 AAAAATTTCTTGAGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        11617 16 -    281578 AAAAATTTCTTGAGCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984170 16 + 121039945 AAAAATTTCTTGATCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225246 16 + 169600520 AAAAATGTCTTGACCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289430 16 - 171882078 AAAAAGGTCTTGAGCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1462988 16 +   1584492 AAAAATGTCTTGATCA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7506517 16 +  58131712 AAAAAGGTCTTGAGCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         5174 16 +    138091 AAAAATTTCTTGACCA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035043 16 +   3749464 AAAAATTTCTTGACCA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424400 16 - 132174527 aaaaaattCTTGCCCA
i calJac3.chr10             I 253 C 0
s saiBol1.JH378108           49805679 14 +  54856640 --AAATTTCTTGCCCA
i saiBol1.JH378108          C 0 C 0
e canFam3.chr9                5823122  9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I
e cebCap1.NW_016107745v1      1007689 253 -   1842816 I

a score=65168.000000
s hg38.chr15_KI270851v1_alt     72087 10 +    263054 GCTCTTTGAC
s panTro5.chr15              70401851 10 -  83230942 GCTCTTTGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25808554 10 +  99763055 GCTCTTTGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        11633 10 -    281578 GCTTTTTGAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984186 10 + 121039945 GCCCTTTGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225262 10 + 169600520 GCTCTTTGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289446 10 - 171882078 GCTCTTTGAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463004 10 +   1584492 GCTCCTTGAT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7506533 10 +  58131712 GCTCTTTGAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         5190 10 +    138091 GCTCTTTGAT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035059 10 +   3749464 GCTCTTTGAT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424416 10 - 132174527 GCTCTTAGAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49805693 10 +  54856640 GCTCTTAGAA
i saiBol1.JH378108          C 0 C 0
s dasNov3.JH564958             400882 10 -    584178 GCTTTTAGAT
i dasNov3.JH564958          N 0 C 0
e canFam3.chr9                5823122  9 -  61074082 I
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I
e cebCap1.NW_016107745v1      1007689 253 -   1842816 I

a score=194782.000000
s hg38.chr15_KI270851v1_alt     72097 35 +    263054 GATGGTCATGTTTATCTCCTTCTTCTTGGCAGCCA
s panTro5.chr15              70401861 35 -  83230942 GATGGTGATGTTTATCTCCTTCTTCTTGGCAGCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25808564 35 +  99763055 GATGGTGATGTTTATCTCCTTCTTCTTGGCAGCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        11643 35 -    281578 GATGGTGATGTTTATCTCCTTCTTCTTGGCAGCCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984196 35 + 121039945 GATGGTGATGTTTATCTCCTTCTTCTTGGCAGCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225272 35 + 169600520 GATGGTGATGTTTATCTCCTTCTTCTTGGCAGCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289456 35 - 171882078 GACGGTGATGTTTATCTCTTCCTTCTCGGCAGCCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463014 35 +   1584492 GATGGTGATGTTTATCTCCTTCTTCTCCGCAGCCA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7506543 35 +  58131712 GATGGTGATGTTTATCTCCTCCTTCTCAGCAGCCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         5200 32 +    138091 GATGGTGATGTTTAT---CTCCTTCTCCGCAGCCA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035069 32 +   3749464 GATGGTGATGTTTAT---CTCCTTCTCGGCAGCCA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424426 32 - 132174527 GATGGTGATGCTGATCTCCCTGTTCTTGGCAG---
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49805703 32 +  54856640 GATGGTGATGCTGATCTCCCTGTTCTTGGCAG---
i saiBol1.JH378108          C 0 C 0
s canFam3.chr9                5823131 33 -  61074082 GATCACCAGGATCTTCACCTCGTCATTGTCATC--
i canFam3.chr9              I 9 C 0
s dasNov3.JH564958             400892 34 -    584178 GATGATAATCTTCACTTGTTCGTTCTCATCAGCC-
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e otoGar3.GL873533           30947835 47 +  31380117 I
e cebCap1.NW_016107745v1      1007689 253 -   1842816 I

a score=159752.000000
s hg38.chr15_KI270851v1_alt     72132 20 +    263054 AGCCCAGCAAAAGAATGGCA
s panTro5.chr15              70401896 20 -  83230942 AGCCCAGCGAAAGAATGGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25808599 20 +  99763055 AGCCCAGCGAAAGAATGGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        11678 20 -    281578 AGCCCAGCAAAAGAACGGCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984231 20 + 121039945 AACCCAGCAAAAGAATGGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225307 20 + 169600520 AGCCCAGCAAAAGAACGGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289491 20 - 171882078 AGCCCAGCAAAAGAACGGCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463049 20 +   1584492 AGCCCAGCAAAAGAACGGCA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7506578 20 +  58131712 AGCCCAGCAAAAGAACGGCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         5232 20 +    138091 AGCCCAGCAAAAGAACGGCA
i manLeu1.NW_012101289v1    C 0 M 375
s colAng1.NW_012115677v1      3035101 20 +   3749464 AGCCCAGCAAAAGAATGGCA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424458 18 - 132174527 --CCTGGTAAAAGAATGGCA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49805735 18 +  54856640 --ACTGGTAAAAAAATGGCA
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533           30947882 20 +  31380117 AGCCCGGTAGAATAAGGGGA
i otoGar3.GL873533          I 47 C 0
s canFam3.chr9                5823164 20 -  61074082 AGCCCGGTAGAAGAAGGGGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             400926 16 -    584178 ----CGGTAAAAGAATGGGA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e cebCap1.NW_016107745v1      1007689 253 -   1842816 I

a score=29146.000000
s hg38.chr15_KI270851v1_alt     72152 7 +    263054 CACAGCA
s panTro5.chr15              70401916 7 -  83230942 CACAGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25808619 7 +  99763055 CACAGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        11698 7 -    281578 CACAGCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984251 7 + 121039945 CACAGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225327 7 + 169600520 CACAGCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289511 7 - 171882078 CAGAGCG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463069 7 +   1584492 CGCAGAG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7506598 7 +  58131712 CAGAGTG
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3035121 7 +   3749464 CACAGCA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424476 7 - 132174527 CGTAGGG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49805753 7 +  54856640 CATAGGG
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533           30947902 4 +  31380117 ---GGCA
i otoGar3.GL873533          C 0 I 3
s canFam3.chr9                5823184 7 -  61074082 CGCAGGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             400942 7 -    584178 TGCAGGG
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9385436 59 +  14477005 I
e cebCap1.NW_016107745v1      1007689 253 -   1842816 I
e manLeu1.NW_012101289v1         5252 375 +    138091 M

a score=289285.000000
s hg38.chr15_KI270851v1_alt     72159 38 +    263054 GTTGCTGCCCAAGCCTGGGTGCTCCTGG------------------TGGTCCTGCA------------------
s panTro5.chr15              70401923 38 -  83230942 GTTGCTGCCCAAGCCTGGGTGCTCCTGG------------------TGGTCCTGCA------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25808626 38 +  99763055 GTTGCTGCCCAAGCCTGGGTGCTCCTGG------------------TGGTCCTGCA------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        11705 38 -    281578 GTTGCTGCCCAAGCCTGGGTGCTCCTGG------------------TGGTCCTGCA------------------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984258 38 + 121039945 GTTGCTGCCCAAGCCTGGGTGCACCTGG------------------TGGTCCTGCA------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225334 56 + 169600520 GTTGCTGCCCAAGCCTGggtgctcctggtgctcctggtgctcctgctgctcctgCG------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289518 38 - 171882078 GCTGCTGCCCAAGCCTGGGTGCTCCTGG------------------TGCTCCTGCG------------------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463076 38 +   1584492 GTTGCTGCCCAAGCCTGGGTGCTCCTGC------------------TGCTCCTGCG------------------
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7506605 38 +  58131712 GTTGCTGCCCAAGCCTGGGTGCTCCTGG------------------TGCTCCTGCG------------------
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3035128 38 +   3749464 GTTGCTGCCCAAGCCTGGGTGCTCCTGG------------------TGCTCCTGCG------------------
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424483 38 - 132174527 GTTGCTGCCCAAGCCTGGGTGCTCCTGG------------------AAGGTCTTCC------------------
i calJac3.chr10             C 0 I 10
s saiBol1.JH378108           49805760 38 +  54856640 GTTTCTGCCCAAGCCTGGGTGCTCCTGG------------------AAGGACTTCA------------------
i saiBol1.JH378108          C 0 I 10
s aotNan1.NW_018502759v1      9385495 38 +  14477005 GTTGCTGCCCAAGCCTGGGCGCTCCCGG------------------GGGTTCTGCA------------------
i aotNan1.NW_018502759v1    I 59 I 24
s otoGar3.GL873533           30947909 38 +  31380117 GTTGCTGCCCAAGCCTGGGCGCTCCTGC------------------GGGTTCTGGA------------------
i otoGar3.GL873533          I 3 I 18
s canFam3.chr9                5823191 38 -  61074082 ATTCTTGCTTAAACCTAGGTATGGCTGG------------------GGATTCTGCA------------------
i canFam3.chr9              C 0 I 18
s dasNov3.JH564958             400949 56 -    584178 GCTGTTGCCCAGGCCTGGGTGATTCTGG------------------GGGTTTTGAATCTCACGTAGCAGTTGCA
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1007689 253 -   1842816 I
e manLeu1.NW_012101289v1         5252 375 +    138091 M

a score=11504.000000
s hg38.chr15_KI270851v1_alt     72197 6 +    263054 CGATCG
s panTro5.chr15              70401961 6 -  83230942 CGATGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25808664 6 +  99763055 CGATCG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        11743 6 -    281578 CGATCG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984296 6 + 121039945 CGATTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225390 6 + 169600520 CGATGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289556 6 - 171882078 TGATGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463114 6 +   1584492 CGATGG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7506643 6 +  58131712 TGATGG
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3035166 6 +   3749464 CGATGG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424531 2 - 132174527 CG----
i calJac3.chr10             I 10 C 0
s saiBol1.JH378108           49805808 2 +  54856640 CG----
i saiBol1.JH378108          I 10 C 0
s otoGar3.GL873533           30947965 6 +  31380117 TGATCT
i otoGar3.GL873533          I 18 C 0
s canFam3.chr9                5823247 6 -  61074082 TGATTT
i canFam3.chr9              I 18 C 0
s dasNov3.JH564958             401005 6 -    584178 TAATTT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9385533 24 +  14477005 I
e cebCap1.NW_016107745v1      1007689 253 -   1842816 I
e manLeu1.NW_012101289v1         5252 375 +    138091 M

a score=307078.000000
s hg38.chr15_KI270851v1_alt     72203 72 +    263054 GCTG------------TGCAGTAGGCTTGTCGTGGGGA---GAACCCTCCCTGGCCTCTCCTTGCACAGGCTCCACGCTGTCAGTGA
s panTro5.chr15              70401967 47 -  83230942 GCTG------------TGCAGTAGGCTTGTCAAGGAGA---GGATCCTCCCTGGCCTCTCCT-------------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25808670 63 +  99763055 GCTG------------TGCAGTAGGCTTGTCAAGGAGA---GGATCCTCCCTGGCCTCTCCTTGGGCAGA---------GGAGGTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        11749 63 -    281578 GCTG------------TGCAGTAGGCTTGTCAAGGAGA---GGATCCTCCCTGGCCTCTCCTTGGGCAGA---------GGAGGTGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984302 72 + 121039945 GCTG------------TGCAGTAGGGCTGTCGTGGGGA---GAACCCTCCCTGGCCTTTCCTTGCGCAGGCTCCACACTGTCAGTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225396 72 + 169600520 GCTG------------TGCAGTGGGGTTGTCGTGGGGA---GACCCCTCCCTGGCCTCTCCTTGCCCAGTCTCGGCGCTGACGCTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289562 69 - 171882078 TCTG------------TGCAGCAGGGTTGTTGTGGGGA---GACCCCTCCGTGGCCT---CGTGAGCTGGCTCCTGGCTGTCGGTGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463120 72 +   1584492 GCTG------------TGCAGTAGGGTTGTCGTGGGGA---GACCCCTCCCTGGCCTCTCCTTGCCCAGTCTCGGCGCTGACGGTGA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7506649 72 +  58131712 TCTG------------TGCAGTAGGGTTGTTGTGGGGA---GATCCCTCCGTGGCCTCTCCGTGTGCTGGCTCCTCGCTGTCAGTGA
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3035172 72 +   3749464 GCTG------------TGCAGTAGGGTTGTCCTGGGGA---GACCCCTCCCTGGCCTCTCCTTGCGCAGGCTGGGTGCTGTCGGTGA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424533 81 - 132174527 GCTGCTCGATGTTTCCTACAGTGGGGTTGCCCTGGGGA---GAACCCTCCCTGGCATCTCTT---GCAGGCTCCATGCTGTCTGCCA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49805810 81 +  54856640 GCTGCACGATGTTTCCTACAGTGGGGTTGCCCTGGGCA---GAACGCTCCCTGGCGTCTCTT---GCAGGCTCCATGCTGTCTGCGA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9385557 69 +  14477005 GCTG------------TGCAGTGGGGTTGTCTCGAGGA---GAACCCTCCCCAGTCTCTCCTTGCGCAGGCTC---GCTGCCGGCGA
i aotNan1.NW_018502759v1    I 24 C 0
s otoGar3.GL873533           30947971 72 +  31380117 GCTG------------AGTAGTGGGGTCCTCAGGCGGA---GACACCTCCCTGGCCTCTCCTCGTGCAGGTTCCATGTTATCACTGA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5823253 75 -  61074082 GCTG------------TGCAGTGGGGTTCTCAGGGGCACTGTGGCCTGGTAGGGCCTCTCCCTGAGGAGGTGCCACATTATCATTGT
i canFam3.chr9              C 0 I 6
s dasNov3.JH564958             401011 51 -    584178 GCTG------------GGCAGTGGGATTCTC------A---G---------------CTCCTTTTACAGGTTCCCCATCATCTGCCA
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1007689 253 -   1842816 I
e manLeu1.NW_012101289v1         5252 375 +    138091 M

a score=1424538.000000
s hg38.chr15_KI270851v1_alt     72275 177 +    263054 GGCTCACCTCACAAAGATCTTTG-----------GAGAGAGGGAGGT----------------------GGGGATCTGAGCTCA-----GTGAGAGCCCC--------------------C-C-TGCTCCTGCCTGCCCACCCCGCCT-----GAGGGCTC-TACTCACCACCATGCTTGTGGGCAGCCCCAAGCTCCTGGGGGGCTGGGGCTCCTGGACTGGGCTCATGAGCAGGGTTCTGG
s panTro5.chr15              70402014 167 -  83230942 ---------CACAAAGATCTTTG-----------GAGAGAGGGAGGC----------------------GGGGATCTGAGCACA-----GTGGGAGCCCC--------------------C---TCTTCCTGCCTGCCCACCCCACCT-----GAGGGCTC-TACTCACCACCATGCTTGTCTGCAGCCCCAAGCTCCTGGGGAGCTGGGGCTCCTGGACCGGGCTCATCAGCAGGGTTCTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25808733 177 +  99763055 GGCTCACCTCACAAAGATCTTTG-----------GAGAGAGGGAGGC----------------------GGGGATCTGAGCTCA-----GTGAGAGCCCC--------------------C-C-TGCTCCTGCCTCCCCACCCCGCCT-----GAGGGCTC-TACTCACCACCATGCTTGTGGGCAGCCCCAAGCTCCTGGGGGGCTGGGGCTCCTGGACTGGGCTCATGAGCAGGGTTCCGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        11812 177 -    281578 GGCTCACCTCACAAAGATCTTTG-----------GAGAGAGGGAGGC----------------------AGGGATCTCAGCACA-----GTGGGAGCCCC--------------------C-C-TCTTCCTGCCTGCCCACCCCACCT-----GAGGGCTC-TACTCACCACCATGCTTGTCTGCAGCCCCAAGCTCCTGGGGGGCTGGGGCTCCTGGACCGGGCTCATCAGCAGGGTTCTGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984374 178 + 121039945 GGTTCACCTCACAAAGATCTTTG-----------GAGAGAGGGAGGC----------------------GGGGATCTGAGCACA-----GTGCGAGCCCC--------------------CCC-TGCTCCTGCCTGCCCACCCTGCCT-----GAGGGCTC-TACTCACCACCATGCTTGTGGGCAGCTAAAAGCTCCTGGGGGGCTGGGGATCCTGGACTGGGCTCATCAGCAGGATTCTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225468 176 + 169600520 GGCTCAGCTCACAAAGATCTTTG-----------GAGAGAGGGAGGC----------------------GGGGATCTGAGCACA-----GTGCAAACC----------------------CCC-TGCTCCTGCCTGCCCGCCCCGCCT-----GAGGGCTC-TACTCACCACCATGCTGGTTGGCAGCCCTAAGCTCCTGGGGGGCTGGGGCTCCTGGACGGGGCTCATGAGCAGGGTTCTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289631 215 - 171882078 GGCTCATGTCACAAAGATCTTTG-----------GAGAGAGGGAGTTGGGAATTTGGAGACAGTGAATGGGGGATCTGAGCACA-----GTGCAAgccccgcccgt-----ccccccccaccc-cgctcctgcctgcccgccccgccT-----GAGGGCTC-TACTCACCACCATGCTTGTGGGCATCCCCAGTCTCCTGGGGGGCTGGGGCTCCTGGACCGGGCTCCTCAACAGGGTTCTGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463192 178 +   1584492 GGCTCACCTCACAAAGATCTTTG-----------GAGAGAGGGAGGC----------------------GGGGATCTGAGTGCA-----GTGCCAGCACC--------------------CCC-TGCTCCTGCCTGTCCGCCCCGCCT-----GAGGGCTC-TACTCACCACCATGCTTGTGGGCAGCCCCAAGCTCCTGGGGGTCTGGGACTCCTGGACGGGGCTCATGAGCTGGGTTCTGG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7506721 220 +  58131712 GGCTCACCTCACAAAGATCTTTG-----------GAGAGAGTGAGTTGGGAATTTGGAGACAGTGAATGGGGGATCTGAGCATG-----GTGCAAGccccgcccatccccccccccccccccc-cgctcctgcctgcccgccccgccT-----GAGGGCTC-TACTCACCGCCATGCCTGTGGGCATCCCCAGTCTCCTGGGGGGCTGGGGCTCCTGGACCGGGCTCCTCGACAGGGCTCTGG
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3035244 178 +   3749464 GACTCACTTCACAAAGATCTTTG-----------GAGAGAGGGAGGC----------------------AGGGATCTGAGTGCA-----GTGCCAGCACC--------------------CCC-TGCTCCTGCCTGCCCGCCCCACCT-----GAGGGCTC-TACTCACCACCATGCTGGTCGGCAGCCACAAGCTCCTGGGGGTCTGGGGCTCCTGGACCAGGCTCATTAGCAGGGTTCTGG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424614 178 - 132174527 GACTCACCTCACAAAGATCTTTG-----------GAGAGAGGGAGGT----------------------GGGGATCTCAGCTCA-----GGGTGAATTTC--------------------CCC-TGCTCCTGCCTGCCCACCCCACCT-----GAGGGCTC-CACTCACCGCCCTGCTTGTTGACAGTCTCAAGCTCCTGGGGGGCTGGGGTCCCCGGAGCGGGCTCATCAACGTGATTCTTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49805891 178 +  54856640 GGCTCACCTCACAAAGATCTTTG-----------GAGAGAGGGAGGT----------------------GTGGATCTCAGCTCG-----GGGTGAATCTA--------------------CCC-TGCTCCCGCCTGCCCACCCTGCCT-----GAGGGCTC-CACTCACCACCCTGCTTGTTGACAGTCCCAAGCTGCTGGGGGGCTGGGACCCCTGGAGCGTGCTCATCAACATGGTTCTTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1007942 175 -   1842816 GGCTCATCTCATAAAATTCTTTG-----------GAGAGAGGGAGGT----------------------GGGGATCTGAGTACA-----GTGCCAGCCTC--------------------CCC-TGCTCCTGCATGCCCACCCCGCCT-----GAGGGCTC-TACTCACCATC---CTTGTCAGCAGCACCAAGCTCCTGGGGGGCTGGGGCCCCTGGAGTGGACTCATTAGCAGGGTGCTGG
i cebCap1.NW_016107745v1    I 253 I 34
s aotNan1.NW_018502759v1      9385626 180 +  14477005 GGCTCACCTCACAAAGATCTTTG-----------GAGAGAGAGAGGC----------------------AGGGCTCTGAGCACC-----ATGTGAGCCCC--------------------CCCTTGCTCCTGCCTGCCCACACCTCCC-----GAGGGCTCTTACTCACCACCCTGCTGGTTGGCAGCCCCAAGCTCCTGGGGGGCTGGGGCCTCTGGACTGGGCTCAGCTGCAGGGTTCTGG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30948043 174 +  31380117 GGCTCACCTCATAAAAATCTTTT-----------G-GAGAGAGGAGC----------------------AGGGCTCTGAGCCAC-----TTGTAGCCTTC--------------------CCC-TGCTCCTGC---CCCACCCTGCCC-----AAGGGCTC-TACTCACCACCCTGCTTGTTGGTAGCTCCAAGCTCCTGGGGGGCTGTGGGCTTTGGGGTAGGCTCCTCAGCAGGGCTCTGG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5823334 177 -  61074082 GGCTCACCTCTCGAAGATCTTTGTGGGTCAGGGAGAGAGAAAGAAAC----------------------AGGGCTCTGAGTGCT-----GTGCGAGCTCT--------------------CCC-CGC---------CCCACCCACCCT-----GAGGGCTC-TACTCACCACCCTGGCCATTGGCAGCACCAAGCTCTTGGG---CTGGGGGTGCTGTAGCAGGCTCTGCTGCGGGGTCCTGG
i canFam3.chr9              I 6 C 0
s dasNov3.JH564958             401062 182 -    584178 AATTCACCTCGTGAAGGTCTGAG-----------GAGAGAGAAAGGC----------------------AGGGCTCTGAGCACCCTTCTGTGC---TCTC--------------------CCC-TGCTTCTACCTGCCTTTCCACCTTTCTGAGAGGGCTC-TACTCAC---CCTGGCCATTGCCAGCTCCAAGCTCCTGAGGGGCTGGGGGTGTAGTTGTGGCCCCACCAGCAGGGCTCTGG
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012101289v1         5252 375 +    138091 M

a score=259862.000000
s hg38.chr15_KI270851v1_alt     72452 57 +    263054 GCAGTCACCAAGAATTTGCTGTGTCC---CTT---GTAGTCGC-CACCAGCTGCAACACCATCT
s panTro5.chr15              70402181 60 -  83230942 GCAGCGGCCAGGAATTTTCTGTGCCCATTGTT---GTAGTTGC-TGTAAGCCGCAATACCATCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25808910 57 +  99763055 GCAGTCACCAAGAATTTGCTGTGTCC---CTT---GTAGTCGC-CACCAGCTGCAACACCATCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        11989 60 -    281578 GCAGCGGCCAGGAATTTTCTGTGCCCATTGTT---GTAGTTGC-TGGAAGCCGCAATACCATCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984552 60 + 121039945 GCAGTGGCCAGGAATTTGCTGTGCCCCTCACT---GTAGTCAC-CACAAGCCGCAACATCATCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225644 60 + 169600520 GAAGAGGTCAGGAGTTTGCTGTGCTCGTTGTT---GTGGTCCG-CACAAGCCATAATAGCATCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289846 60 - 171882078 GAAGAGGTCAGGAGTTTGCTGTGCTCGTTGTT---CTGGTCAG-CATAAGCCGCAACATCATCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463370 60 +   1584492 GAAGAGGTCAGGAGTTTGCTGTGCTCGTTGTT---GTGGTCGG-CACAAGCCGTAATAGCATCT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7506941 60 +  58131712 GCAGAGGTCAGGAGTTTGCTGTGCTCGCTGTT---GTGGTCAG-CACAAGCCGCAACTCCATCT
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3035422 57 +   3749464 GCAGCGGCCAGGAATCTGCTGTGTT---TGTT---GTACTCCC-TACAAGCCGTAACAGCATCT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424792 58 - 132174527 GCCGTGGCCAGGAATGTGGCATGGCCCTCGTT---GTCACC---CAGAATTGGAAACACCGGCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49806069 58 +  54856640 GCAGTGGCCAGGAATTTGGCATGGCCCTCGTT---GTCACC---CAGAATTGGAAACACCGGCT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9385806 61 +  14477005 GAAGCTGCCAGGAATCTGCTATGCCACTCATTTCGGTCGTT---CACAAGCCGTAACACCAGCT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30948217 61 +  31380117 GTAGCTGCCAGGAATTTGCCATGCCACTCATT---GCGCTGGCTCACGAGTTGTACCACTAGCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5823511 61 -  61074082 GCAGCTGCCAGGAGCTTGCCCTGCCGTTCATT---GCGCTCGCTCACTAGGCATAGCACCAGTT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             401244 61 -    584178 GCAGCTGCCAGAAATTTGCCATGCCATTCATT---GCGCTCGTTGACAAGTCTTAATACCAGTT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1008117 34 -   1842816 I
e manLeu1.NW_012101289v1         5252 375 +    138091 M

a score=255617.000000
s hg38.chr15_KI270851v1_alt     72509 33 +    263054 CCTGCAGCTCCAGCAGCTTCACCTGGAGGGAGG
s panTro5.chr15              70402241 33 -  83230942 GCTGCAGCTCCAGCAGCTTCACCTGGAGGGAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25808967 33 +  99763055 CCTGCAGCTCCAGCAGCTTCACCTGGAGGGAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12049 33 -    281578 GCTGCATCTCCAGCAGCTTCACCTGGAGGGAGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984612 33 + 121039945 CTTGCAGCTTCAGCAGCTTCACCTGGAGTGGGG
i nomLeu3.chr6              C 0 I 126
s rheMac8.chr7                8225704 24 + 169600520 CCT---------GCAGCTCCACCTGGAGGGAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289906 33 - 171882078 CCTGCAGCGCCAGCAGCTTCACCTGCAGGGAGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463430 24 +   1584492 CCT---------GCAGCTCCACCTGGAGGGACG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507001 33 +  58131712 CCTGCAGCGCCAGCAGCTTCACCTGGAGGGAGG
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3035479 33 +   3749464 CCTGCAGCGCCAGCAGATTCACCTGGAGGGAGG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424850 24 - 132174527 CCTGCTGCTCCAG---------CTGGAGAGAGG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49806127 24 +  54856640 CCTGCAGCTGCAG---------CTGGAGAGAGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1008151 33 -   1842816 CCTGCAGCTCCAGCAGCTTCACCTGGAGATAGG
i cebCap1.NW_016107745v1    I 34 C 0
s aotNan1.NW_018502759v1      9385867 33 +  14477005 CCTGCAGCTCCAGCAGCTTCACCTGGAGGGAGG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30948278 33 +  31380117 CCTGCAGCTCCAGTAACTTCACCTGGAGTGAGA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5823572 33 -  61074082 TCTGTAGCTCCAGCAGCTTCATCTGGAAGGAGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             401305 33 -    584178 CCTGCAACTCCAGCAGTTTTACCTAGACAGAGA
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012101289v1         5252 375 +    138091 M

a score=97468.000000
s hg38.chr15_KI270851v1_alt     72542 11 +    263054 GGTGCTCAGCT
s panTro5.chr15              70402274 11 -  83230942 GGTGCTCAGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809000 11 +  99763055 GGTGCTCAGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12082 11 -    281578 GGTGCTCAGCT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7                8225728 11 + 169600520 GGTGCTCAGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289939 11 - 171882078 GGTGCTCAGCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463454 11 +   1584492 GGTGCTCAGCT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507034 11 +  58131712 GGTGCTCAGCC
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3035512 11 +   3749464 GGTGCTCAGCT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424874 11 - 132174527 GGTGCTCAGCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49806151 11 +  54856640 GGTGCTCAGCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1008184 11 -   1842816 GGTGCTCAGCT
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9385900 11 +  14477005 GGTGTTCAGCT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30948311 11 +  31380117 GGTATTCAGCA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5823605 11 -  61074082 GGTGCTGAGCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             401338 11 -    584178 TATGCTCAGAA
i dasNov3.JH564958          C 0 C 0
e nomLeu3.chr6               75984645 126 + 121039945 I
e manLeu1.NW_012101289v1         5252 375 +    138091 M

a score=29220.000000
s hg38.chr15_KI270851v1_alt     72553 5 +    263054 GTCAC-
s panTro5.chr15              70402285 5 -  83230942 GCCAT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809011 5 +  99763055 GTCAC-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12093 5 -    281578 GCCAT-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984771 5 + 121039945 GTCAC-
i nomLeu3.chr6              I 126 C 0
s rheMac8.chr7                8225739 5 + 169600520 GTCAC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289950 5 - 171882078 GTCAC-
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463465 5 +   1584492 GTCAC-
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507045 5 +  58131712 GTCAC-
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3035523 5 +   3749464 GTCAC-
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424885 5 - 132174527 GCCAC-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49806162 5 +  54856640 GCCAC-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1008195 5 -   1842816 GCCAC-
i cebCap1.NW_016107745v1    C 0 I 38
s aotNan1.NW_018502759v1      9385911 5 +  14477005 GCCGC-
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30948322 3 +  31380117 --CAT-
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5823616 4 -  61074082 -CCCC-
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             401349 5 -    584178 -CCCCT
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012101289v1         5252 375 +    138091 M

a score=59306.000000
s hg38.chr15_KI270851v1_alt     72558 14 +    263054 GCTGCTgccagcgc
s panTro5.chr15              70402290 14 -  83230942 GCCGCTGCCTGCGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809016 14 +  99763055 GCTGCTgccagcgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12098 14 -    281578 GCCGCTGCCTGCGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984776 14 + 121039945 GCCGCTGCTGGCGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225744 14 + 169600520 GCTGCTGCCGGCGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289955 14 - 171882078 ACTGCTGCCGGCGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463470 14 +   1584492 ACCGCTGCCGCcgc
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507050 14 +  58131712 ACCACTGCCGGCGc
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3035528 14 +   3749464 GCTGCTGCCAGTGC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424890 14 - 132174527 GCTGGTCCCAGCAC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49806167 14 +  54856640 ACTGGTGCCAGCAC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9385916 14 +  14477005 ACCTGTGCCTGTGC
i aotNan1.NW_018502759v1    C 0 I 5
s otoGar3.GL873533           30948325  5 +  31380117 ----GTGCC-----
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5823621 12 -  61074082 --GAGTTCCACCCC
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             401354 14 -    584178 GCCCCTGCCCCTGC
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1008200 38 -   1842816 I
e manLeu1.NW_012101289v1         5252 375 +    138091 M

a score=4247.000000
s hg38.chr15_KI270851v1_alt     72572 12 +    263054 tcaccgtcacag
s panTro5.chr15              70402304  6 -  83230942 CCACCC------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809030 12 +  99763055 tcaccgtcacag
i panPan2.chr15             C 0 I 12
s gorGor5.CYUI01000141v1        12112 12 -    281578 ccaccctcaccc
i gorGor5.CYUI01000141v1    C 0 I 10
s nomLeu3.chr6               75984790 12 + 121039945 CCACCCTCACAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225758 12 + 169600520 CCACCCTCACGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289969  9 - 171882078 ---CCTTCATGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463484 12 +   1584492 ccaccctcacgc
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507064 12 +  58131712 ccaccctcacgc
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3035542 12 +   3749464 CCAATCTCACGC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424904 12 - 132174527 CCACACTCATGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49806181 12 +  54856640 CCATGGTCATGC
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533           30948330  3 +  31380117 ------TAG---
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5823633 10 -  61074082 TGCCCTGTAC--
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             401368  2 -    584178 ---CC-------
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9385930  5 +  14477005 I
e cebCap1.NW_016107745v1      1008200 38 -   1842816 I
e manLeu1.NW_012101289v1         5252 375 +    138091 M

a score=31005.000000
s hg38.chr15_KI270851v1_alt     72584 3 +    263054 cca
s panTro5.chr15              70402310 3 -  83230942 CCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809054 3 +  99763055 cca
i panPan2.chr15             I 12 C 0
s gorGor5.CYUI01000141v1        12134 3 -    281578 cca
i gorGor5.CYUI01000141v1    I 10 C 0
s nomLeu3.chr6               75984802 3 + 121039945 CCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225770 3 + 169600520 CCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289978 3 - 171882078 CCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463496 3 +   1584492 cca
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507076 3 +  58131712 cca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         5634 3 +    138091 CCA
i manLeu1.NW_012101289v1    M 375 C 0
s colAng1.NW_012115677v1      3035554 3 +   3749464 CCA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424916 3 - 132174527 CCA
i calJac3.chr10             C 0 I 9
s saiBol1.JH378108           49806193 3 +  54856640 CCA
i saiBol1.JH378108          C 0 I 9
s otoGar3.GL873533           30948333 3 +  31380117 CCA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5823643 2 -  61074082 -CA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             401370 3 -    584178 CTA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9385930 5 +  14477005 I
e cebCap1.NW_016107745v1      1008200 38 -   1842816 I

a score=-8587.000000
s hg38.chr15_KI270851v1_alt     72587  2 +    263054 c------------c
s panTro5.chr15              70402313  2 -  83230942 C------------C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809057  2 +  99763055 c------------t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12137  2 -    281578 c------------c
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984805  2 + 121039945 C------------C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225773  2 + 169600520 C------------C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289981  6 - 171882078 CCCC--------AC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463499 14 +   1584492 cccccatgcccacc
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507079  7 +  58131712 caccca-------c
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         5637  2 +    138091 C------------C
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035557  2 +   3749464 C------------C
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424928  2 - 132174527 C------------C
i calJac3.chr10             I 9 C 0
s saiBol1.JH378108           49806205  2 +  54856640 C------------C
i saiBol1.JH378108          I 9 C 0
s cebCap1.NW_016107745v1      1008238  2 -   1842816 C------------C
i cebCap1.NW_016107745v1    I 38 C 0
s otoGar3.GL873533           30948336  2 +  31380117 C------------C
i otoGar3.GL873533          C 0 I 2
s canFam3.chr9                5823645  1 -  61074082 -------------C
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             401373  2 -    584178 C------------C
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9385930  5 +  14477005 I

a score=393299.000000
s hg38.chr15_KI270851v1_alt     72589 44 +    263054 cccacccccGCAGAGATGTT--GCACA-CTCTACCTTCATCTCCTCC
s panTro5.chr15              70402315 44 -  83230942 CCCACCCCCACAGAGATGTT--GCCCA-CCCTACCTTCATCTCCTCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809059 44 +  99763055 cccacccccGCAGAGATGTT--GCACA-CTCTACCTTCATCTCCTCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12139 43 -    281578 ccca-ccccACAGAGATGTT--GCACA-CCCTACCTTCATCTCCTCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984807 44 + 121039945 CCCACCCCCACAGAGATGTT--GCACA-CCCTACCTTCATCTCCTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225775 44 + 169600520 CCCACCCCTGCAGAGATGTT--GCACA-CCCTACCTTCATCTCCTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170289987 44 - 171882078 CCCACCCCCGCAGAGATGTT--GCCCA-CGCTACCTTCATCTCCTCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463513 44 +   1584492 cccacccccGCAGAGATGTT--GCACA-CCCCACCTTCATCTCCTCC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507086 44 +  58131712 cccacccccacAGAGATGTT--GCACA-CGCTACCTTCATATCCTCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         5639 44 +    138091 CCCACCCCCGCAGAGATGTT--GCACA-CCCTACCTTCATCTCCTCC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035559 44 +   3749464 CCCACCCCCTCAGAGATGTT--GCACA-CCCTACCTTCATCTCCACC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424930 44 - 132174527 CTCACCCCCGCAGAGATGCT--GCTCG-CCTTACCTTTATCTCCCGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49806207 44 +  54856640 CTCCGCCCCGCAGAGATGCT--GCTCG-CCTTACCTTTATCTCCCGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1008240 44 -   1842816 CTCACCCCTGCAGAGATGTT--GTACA-CCTTACCTTCATCCCCTCC
i cebCap1.NW_016107745v1    C 0 I 85
s aotNan1.NW_018502759v1      9385935 43 +  14477005 -CCCACCCCACAGAGATGTT--CCACG-CCGTACCTTCATCTCCTCC
i aotNan1.NW_018502759v1    I 5 C 0
s otoGar3.GL873533           30948340 43 +  31380117 CCCTTGTCCATAAAGATACC---CAGG-CTCTACCTTCATTTCCTCT
i otoGar3.GL873533          I 2 C 0
s canFam3.chr9                5823647 37 -  61074082 --------CCCAGCGATGCT--CAGGGCCCCTACCTTCATGTTTTCT
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             401375 44 -    584178 --ACTACCCTCAGAGATGTTTAGGGCC-TCCTACCTTCATTTCTTCC
i dasNov3.JH564958          C 0 C 0

a score=454073.000000
s hg38.chr15_KI270851v1_alt     72633 82 +    263054 CTGTCCAGGGCCAGCCTGATGGTGT------CCTCCTCCCGGTGCTGCATCTTTGGCACTGCCCCCTGGCTTTGTTATAGGGTGATAA
s panTro5.chr15              70402359 79 -  83230942 CTG---AGCTCCAGCCTGATGGTGT------CCTCCTCCCAGTGCCGCATCTTTGGCACGGCCCCCTGGTTCTGATAAAACGTGATGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809103 82 +  99763055 CTGTCCAGGGCCAGCCTGATGGTGT------CCTCCTCCCGGTGCTGCATCTTTGGCACTGCCCCCTGGCTTTGTTATAGGGTGATAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12182 78 -    281578 CTG---AGCTCCAGCCTGATGGTGT------CCTCCTCCCAGTGCCGCATCTTTGGCACGGCCCCCTGGTTCTGATAAAA-GTGATGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984851 82 + 121039945 CTGTCCTGGGCCAGCCTGATGATGT------CCTCCTCCCGGTGCCGCATCTTTGGCACTGCCCCCCGGCTCTGTATTAAGGTGATGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225819 82 + 169600520 CTGTGCTGGACCAGCCTGATGATGT------CCTCCTCCCATTGCTGCATCCTCGGCACTGCCCCCTGCCTCTGTTAGAAGCTGATGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290031 79 - 171882078 CTGTCCTGGGCCAGCCTGATGATGT------CCTCCCC---GTGCCACATCTTTAACACTGCCTCCTGGCTCATTTATAAGGTGACGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463557 82 +   1584492 CTGTGCTGGACCAGCCCGATGATGT------CCTCCTCCCATTGCTGCATCCTCGGCACTGCCCCCTGCCTCTGTTAGAAGCTGATGA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507130 79 +  58131712 CTGTACTGGGCCAGCCTGATGATGT------CCTCCCC---GTGCTGCATCTTTGACATTGCCCCCTGGCTCATTTATAAGGTGACGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         5683 82 +    138091 CTGTGCTGGACCAGCCTGATGATGT------CCTCCTCCCATTGCTGCATCCTCGACACTGCCCCCTGCCTCTGTTAGAAGCTGATGA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035603 82 +   3749464 CTGTGCTGGACCAGCCTGATGATGT------CCTCCTCCCATTGCCGCATCTTTGGCACTGCCCCCTGCCTCTATTATAAGCTGAGGA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72424974 64 - 132174527 ------------------------TTTTCCACCTCCTCCTGGTGCCAGGGTTTTGGGACTGCCTTCTGCTGCTCATATGATTTGATGT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49806251 64 +  54856640 ------------------------TTTTCCCCCTCCTCCTAGTGCCAGGACTCTGGGACTGCCCTCTGCGGCTCACATGATTTGATGT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9385978 88 +  14477005 TTGTCCTGGGCCAGCCTGCTGATGTACTCCTCCTTCTCCCGGTGCCGCTCCTTCAGCACTGCCCTCTGGCTCTGGTACAGTGCGATGT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30948383 88 +  31380117 TTTTCCTGCGCCATCCGGCTCACATACTCCTCATTCTCCTGCTGCCGCTTCTTCAGTGCTAGCCTCTGACACTGGTACAGTGTGACGT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5823684 88 -  61074082 TTGTCTTGAGCCAGACGGCTAATGTACTCCTCCTTCTCCCGGTGCCGTTCCTTCAGCACTGCCCTCTGATTCTGGTACAGGGCGATGT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             401419 88 -    584178 TTGTCCTGGGCCAAGCGGCTAATGTACTCCTCCTTCTCACGGTGACGCTCCTTCATCACTGCCCTCTGATTTTGGTATAAGGCAATGT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1008284 85 -   1842816 I

a score=1798903.000000
s hg38.chr15_KI270851v1_alt     72715 217 +    263054 ACTTTCCTGCGGGAGGAC------------AGG-----GCTCAGACGCTGGGGCCCCTCCAACA-GCCCT-----------------------------------------GCAG---CTCCCCCTGCCAT---GCCCTGG-CCTCC-CACTCACTGATGGCATCTCTCTCTGTAG--TACTGGAAGAATCCAAGTTCTTCTTTCTCCACCAGCTCACTCAGGTCTGCCTTCTCCTCCAGGTGGTCCATAAAGCCGCTCTGGAGCCAAAATAATGGGGTCACATCT
s panTro5.chr15              70402438 217 -  83230942 ATTTTCCTGCGGGAGGAC------------AGG-----GCTCAGACGCTGGGGCCCCTCCGACG-GCCCT-----------------------------------------GCAG---CTCCCCCTGCCGT---GCACTGG-CCTCC-CACTCACTGATGGCATCTCTCTCGCCAG--TGGTGGATGAAGTGAAGTTCTTTTTTCTTGACCAGCTCACTCAGGTCTGCCTTCTCCTCCAGGTGGTCCATAAAGCTGCTCTGGAGCCAAAATATTGCAGTCACATCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809185 216 +  99763055 ACTTTCCTGCGGGAGGAC------------AGG-----GCTCAGACGCTGGGGCCCCTCCAACA-GCCCT-----------------------------------------GCAG---CTCCCCCTGCCAT---GCCCTGG-CCTCC-CACTCACTGATGGCATCTCTCTCTGTAG--TACTGGAAGAATCCAAGTTCTTCTTTCTCCACCAGCTCACTCAGGTCTG-CTTCTCCTCCAGGTGGTCCATAAAGCCGCTCTGGAGCCAAAATAATGGGGTCACATCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12260 217 -    281578 ATTTTCCTGCGGGAGGAC------------AGG-----GCTCAGACGCTGGGGCCCCTTCGACG-GCCCT-----------------------------------------GCAG---CTCCCCCTGCCGT---GCCCTGG-CCTCC-CACTCACTGATGGCATCTCTCTCGCCAG--CGGTGGATGAAGCAAAGTTCTTTTTTCTTCACCAGCTCACTCAGGTCTGCCTTCTCCTCCAGGTGGTCCATAAAGCTGCTCTGGAGCCAAAATATTGCAGTCACATCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75984933 217 + 121039945 ACTTTACTGCAGGGGGAC------------AGG-----GCTCAGACGCTGGGGTGCCTCCTACG-GCCCT-----------------------------------------GCAG---CTCCCCCTGCCGT---GCCCTGG-CCTCC-CACTCACTGATGGCATCTCTCTCTCCAG--GACTGAATGAATCGAAGTTCTAGTTTCTCCACCCACTCCCTCAGGTCTGTCTTCTCCTCCAAGAGGTCCATAAGGCCGCTCTGGAGCCAAAATAACGGGGTCACATCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8225901 217 + 169600520 ACATTCCTGTGGGAGGAC------------AGG-----GCTCAGACGCTGGGGCCCCTCCGAAG-gccct-----------------------------------------gcag---ctccccctgccct---gccctgg-cctcc-cACTCACTGATGGCATCTCTCTCCCCAG--TATTCGATGAATGGAAGTTCGGGTTTCTCCACCAGCTCACTCAGGTCCGCCATCTCCTCCCGGTGGTCCATAAAGCCGCTCTGGAGCCAAAATAATGGGGTCACATCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290110 217 - 171882078 ATTTTCCTGCAGGAGGAC------------AGG-----ACTCAGACGCTGGGGCCCCTCTGAGG-GCCCT-----------------------------------------GCAG---CTCCCCCTGCCAT---GCCCTGA-CCTCC-CACTCACTGATGGCATCTCTCCCTCCAG--TAGTGGATGAACTGAACTTCTAGTTTCTCCACACGCTCCCTCAGGTCTGTCTGCTCCTCCAGGAGGTCCATAAGGCCGCTCTGGAGCCAAAATAATGGGGTCACATCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463639 217 +   1584492 ACATTCCTGTGGGAGGAC------------AGG-----GCTCAGATGCTGGGGCTCCTCCGAAG-ACCCT-----------------------------------------GCAG---CTCCCCCTGCCCT---GCCCTGG-CCTCC-CACTCACTGATGGCATCTCTCTCCCCAG--TATTCGATGAATGGAAGTTCGGGTTTCTCCACCAGCTCACTCAGGTCCGCCATCTCCTCCCGGTGGTCCATACAGCCGCTCTGGAGCCAAAATAATGGGGTCACATCT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507209 216 +  58131712 ATTTTCCTGCCGGAGGAC------------AGG-----GCTCAGACGCTGGGGCCCCTCTGAGG-G-CCT-----------------------------------------GCAG---CTCCCCCTGCCGT---GCCCTGA-CCTCC-CACTCACTGATGGCATCTCTCCCTCCAG--TAGTGGATGAATTGAACTTCTAGTTTCTCCACATTCGCGCTCAGGTCTGTCTTCTCCTCCAGGAGGTCCATAAGGCTGCTCTGGAGCCAAAATAATGGGGTCACATCT
i chlSab2.chr26             C 0 I 57
s manLeu1.NW_012101289v1         5765 217 +    138091 ACATTCCTGTGGGAGGAC------------AGG-----GCTCAGATGCTGGGGATCCTCCGAAG-ACCCT-----------------------------------------GCAG---CTCCCCCTGCCCT---GCCCTGG-CCTCC-CACTCACTGATGGCATCTCTCTCCCCAG--TATTCGATGAATGGAAGTTCGGGTTTCTCCACCAGCTCACTCAGGTCCGCCATCTCCTCCCGGTGGTCCATACAGCCGCTCTGGAGCCAAAATAATGGGGTCACATCT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035685 211 +   3749464 ACATTCCTGCAGGAGGAC------------AGG-----GCTTAGACACTGGGGACCCTCCGAAG-GCCCT-----------------------------------------GCAG---CTCCCCCTGCCTT---GCCCTGG-CCTCC-CACTCACTGATGGCATCTCTGCCCCCAG--TAC------AATCGCAGTTCCGGTTTCTTCACCAGCTCACTCAGGTCCGCTGTCTCCTCCAGGATATCCATAAGGCCACTCTGGAGCCAAAATAATGGGGTCACATCT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72425038 231 - 132174527 CCTTTCCTGTGAAAGGACAGGGCTCACAGACAG-----GCTCAGACACTGGGGACCCTCTGACC-ACCCT-----------------------------------------GCAG---CTCCCCGTGCCGT---GCCCTGG-CCTCC-CGCTCACTCATCGTGTCTGTCTCTTCAGAGAGCCTGATGAATAGAAGCTCTAGTTTCTCTACCCGCTCCTTCAGGTCCACCTCCTCCTTTCGGAGGGTCATAAAGCCGCTCTGAAGTAAAAATAATGGGGTCACATCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49806315 225 +  54856640 CCTTTCCTGCGAGAGGACAGGGCT------CAG-----GCTCAGATGCTGGGGACCCTCCGACC-ACCCT-----------------------------------------GCAG---CTCCCCCTGCCGT---GCCCTGG-CCTCC-CGCTCACTCATCGTGTCCGTCTCTCCAGAGAGCCTGATGAATAGAAGCTCTAGTTTCTCCACTCGCTCCTTCAGGTCCACCTTCTCCTTTCAGAGGGTCCTAAAGCCGCTCTGAAGTAAAAATAATGAAGTCACCTCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1008369 217 -   1842816 ACTTTCCTGTGGGAGGA-------------CAG-----GCTCAGAGGCTGGGGCCCCTCCCACC-Accct-----------------------------------------gcag---ctcccc-tgccct---gccctgg-cctCC-TGCTCACTTATCATGTCTCTCTCTCCATAGAGCTGGATGAGTCCTAGTTCTAGTTTTTCCACCCGCTCCTTCAGGTCCGCATTTTCCTTCACGACGGCCATGAAGTCATTCTGGAGCCGAAATAATGGGGTCACATCT
i cebCap1.NW_016107745v1    I 85 C 0
s aotNan1.NW_018502759v1      9386066 222 +  14477005 ACTCTCCTGCAGGAGAAC------------AGG-----GCTCAGATGCTGGGTTCCCTCCGATC-GCTGT-----------------------------------------ACAGTACCTCCTCCTGCTGT---GTCGTGA-CCTCC-CACTCACCAATGGTGTCTGTCTCTCCAGACAGCTGGATGCAACGATGTTCCAGTTCCTCTACCCTCTCCTTCAGGTCCGCCTTCTCCTGCATGAGCTCCATAAATCGGCTCTGGAGCCAAAATAATGGGGTCACATCT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30948471 261 +  31380117 ACTCACCTACAAAAGGAC------------AGG-----CTTCAGACACTGGGGCTGCTCTGACC-CCTCCAACCCCTGATGGGCTCCTCTAGCCCATTAGGGGCATAACTGGCAG---CTCCCCTTGATGG---GCCCTTG-TCTCCATGCTCACCAATGGTGTCTGTCTCTCCGGACAGCTGGATGCAGCGATGTTCCAGTCCCTCCACCTGTTCCTTCAGGTCTGCCTTCTCCTTCATGACCTCCATAAAGCGGTTCTGGTGTTAAAATAATGGGGTCAGGTCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5823772 220 -  61074082 ATTCTCCTGTGGGTACAC------------GGGCTGCCGCTCAGGCTCTTGGACCCATCACAGG-----------------------------------------------GCTC---CCCCCACCCCCGG---GTGCTGGCCCTCC-CACTCACCAATAGTGTCTGTCTCTCCAGAAAGCTGGATGCAGCAATGCTCCAGCTCCTCCACCCGCTCCTTCAGCTCCACTTTCTCCTGCATGAGCTCCAGGAAGCGGCCCTGTGGCCAGAGCAGCAGGGTCAGGGTC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             401507 223 -    584178 ATTCCCCTGGGGAGAGAG------------AGG-----ACTCAGATACCAGGGCTCCCCTGCCCCACCAT-----------------------------------------GCAG---CTCTCCCTGCCATGGAGCCTATC-CTTTC-TGCTCACCAATAGTGTCCGTCTCTCCAGATAGCTGGATGCAGCGGTGCTCCAGCTCTTCTACCCGCTCCTTCAGATCTACTTTCTCTTGCATGAGTCCAGTAAAACGGTCCTGGAGCCAAAATGACAGAGTCAGGACC
i dasNov3.JH564958          C 0 C 0

a score=90588.000000
s hg38.chr15_KI270851v1_alt     72932 12 +    263054 CGCCAGCGACCT
s panTro5.chr15              70402655 12 -  83230942 CGGCAGCGACCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809401 12 +  99763055 CGGCAGCAACCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12477 12 -    281578 CGGCAGCGACCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75985150 12 + 121039945 TGGCAGTGACCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8226118 12 + 169600520 CGGCAGCGACCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290327 12 - 171882078 CGGTAGCGGCCT
i macFas5.chr7              C 0 I 45
s cerAty1.NW_012002601v1      1463856 12 +   1584492 CGGCAGCGACCT
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1         5982 12 +    138091 CGGCAGCGACCT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035896 11 +   3749464 CGGCA-CAACTT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72425269 12 - 132174527 CAGCAGTGACCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49806540 12 +  54856640 CAGCAGTGACCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1008586 12 -   1842816 TGGCAGTGACCT
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9386288 12 +  14477005 CGGCAGCGACCT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30948732 12 +  31380117 GGGCAGCAACCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5823992  9 -  61074082 AGGCAGC--CC-
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             401730 11 -    584178 -AGCAGCAACTT
i dasNov3.JH564958          C 0 C 0
e chlSab2.chr26               7507425 57 +  58131712 I

a score=44070.000000
s hg38.chr15_KI270851v1_alt     72944 4 +    263054 GCCC
s panTro5.chr15              70402667 4 -  83230942 GCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809413 4 +  99763055 GCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12489 4 -    281578 GCCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75985162 4 + 121039945 GCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8226130 4 + 169600520 GCCC
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463868 4 +   1584492 GCCC
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1         5994 4 +    138091 GCCC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035907 4 +   3749464 GCCC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72425281 4 - 132174527 GCCC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49806552 4 +  54856640 GCCC
i saiBol1.JH378108          C 0 I 41
s cebCap1.NW_016107745v1      1008598 4 -   1842816 ACCC
i cebCap1.NW_016107745v1    C 0 I 58
s aotNan1.NW_018502759v1      9386300 4 +  14477005 GCCC
i aotNan1.NW_018502759v1    C 0 I 47
s otoGar3.GL873533           30948744 4 +  31380117 GCCT
i otoGar3.GL873533          C 0 I 4
s canFam3.chr9                5824001 4 -  61074082 GCCC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             401741 4 -    584178 GCCC
i dasNov3.JH564958          C 0 C 0
e chlSab2.chr26               7507425 57 +  58131712 I
e macFas5.chr7              170290339 45 - 171882078 I

a score=3575.000000
s hg38.chr15_KI270851v1_alt     72948 1 +    263054 T
s panTro5.chr15              70402671 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809417 1 +  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12493 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75985166 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8226134 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463872 1 +   1584492 T
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1         5998 1 +    138091 T
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035911 1 +   3749464 T
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72425285 1 - 132174527 T
i calJac3.chr10             C 0 I 40
s canFam3.chr9                5824005 1 -  61074082 T
i canFam3.chr9              C 0 I 44
s dasNov3.JH564958             401745 1 -    584178 C
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9386304 47 +  14477005 I
e otoGar3.GL873533           30948748 4 +  31380117 I
e cebCap1.NW_016107745v1      1008602 58 -   1842816 I
e chlSab2.chr26               7507425 57 +  58131712 I
e saiBol1.JH378108           49806556 41 +  54856640 I
e macFas5.chr7              170290339 45 - 171882078 I

a score=5453.000000
s hg38.chr15_KI270851v1_alt     72949 4 +    263054 CAGG
s panTro5.chr15              70402672 4 -  83230942 CAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809418 4 +  99763055 CAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12494 4 -    281578 CAGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75985167 4 + 121039945 TCCG
i nomLeu3.chr6              C 0 I 38
s rheMac8.chr7                8226135 4 + 169600520 CAGG
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463873 4 +   1584492 CAGG
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1         5999 4 +    138091 CAGG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035912 4 +   3749464 CAGG
i colAng1.NW_012115677v1    C 0 C 0
s otoGar3.GL873533           30948752 1 +  31380117 C---
i otoGar3.GL873533          I 4 I 1
s dasNov3.JH564958             401746 4 -    584178 CAAC
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9                5824006 44 -  61074082 I
e aotNan1.NW_018502759v1      9386304 47 +  14477005 I
e cebCap1.NW_016107745v1      1008602 58 -   1842816 I
e chlSab2.chr26               7507425 57 +  58131712 I
e saiBol1.JH378108           49806556 41 +  54856640 I
e calJac3.chr10              72425286 40 - 132174527 I
e macFas5.chr7              170290339 45 - 171882078 I

a score=90261.000000
s hg38.chr15_KI270851v1_alt     72953 47 +    263054 TGGCATTTTCA----AGTCATGGAGAAGGCGGAGGTGAGTTCCGGCATGGG
s panTro5.chr15              70402676 47 -  83230942 TGGCATTTTCA----AGTCATGGAGAAGGTGGAGGTGAGTCCTGGCATGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809422 47 +  99763055 TGGCATTTTCA----AGTCATGGAGAAGGTGGAGGTGAGTCCTGGCATGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12498 47 -    281578 TGGCATTTTCA----AGTCATGGAGAAGGCGGAGGTGAGTCCTGGCATGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7                8226139 51 + 169600520 TGGCATTTTCAAATAAGTCATGGAGAAGCTGGAGGTGAGTCCTGGCATGGG
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463877 51 +   1584492 TGGCATTTTCAAGTAAGTCATGGAGAAGCTGGAGGCGAGTCCTGGCATGGG
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1         6003 51 +    138091 TGGCATTTTCAAATGAGTCATGGAGAAGCTGGAGGCGAGTCCTGGCATGGG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035916 51 +   3749464 TGGCATTTTCAAGTAAGTCATGGAGAAGCTGGAAGTGAGTCCTGGCATGGG
i colAng1.NW_012115677v1    C 0 C 0
s otoGar3.GL873533           30948754 38 +  31380117 TCCCTTCTTGGCCCATGTCA-GGAGAGACT---------CCCTTACCT---
i otoGar3.GL873533          I 1 C 0
s dasNov3.JH564958             401750 33 -    584178 --CCTTCTTTGCCTATGTCA--------------GAAAACACTCACTTG--
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9                5824006 44 -  61074082 I
e aotNan1.NW_018502759v1      9386304 47 +  14477005 I
e cebCap1.NW_016107745v1      1008602 58 -   1842816 I
e nomLeu3.chr6               75985171 38 + 121039945 I
e chlSab2.chr26               7507425 57 +  58131712 I
e saiBol1.JH378108           49806556 41 +  54856640 I
e calJac3.chr10              72425286 40 - 132174527 I
e macFas5.chr7              170290339 45 - 171882078 I

a score=5500.000000
s hg38.chr15_KI270851v1_alt     73000 1 +    263054 C
s panTro5.chr15              70402723 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809469 1 +  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12545 1 -    281578 C
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75985209 1 + 121039945 C
i nomLeu3.chr6              I 38 C 0
s rheMac8.chr7                8226190 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290384 1 - 171882078 C
i macFas5.chr7              I 45 C 0
s cerAty1.NW_012002601v1      1463928 1 +   1584492 C
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507482 1 +  58131712 C
i chlSab2.chr26             I 57 C 0
s manLeu1.NW_012101289v1         6054 1 +    138091 C
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035967 1 +   3749464 C
i colAng1.NW_012115677v1    C 0 C 0
e dasNov3.JH564958             401783 0 -    584178 C
e canFam3.chr9                5824006 44 -  61074082 I
e aotNan1.NW_018502759v1      9386304 47 +  14477005 I
e otoGar3.GL873533           30948792 0 +  31380117 C
e cebCap1.NW_016107745v1      1008602 58 -   1842816 I
e saiBol1.JH378108           49806556 41 +  54856640 I
e calJac3.chr10              72425286 40 - 132174527 I

a score=9100.000000
s hg38.chr15_KI270851v1_alt     73001 1 +    263054 C
s panTro5.chr15              70402724 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809470 1 +  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12546 1 -    281578 C
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75985210 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8226191 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290385 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463929 1 +   1584492 C
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507483 1 +  58131712 C
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         6055 1 +    138091 C
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035968 1 +   3749464 C
i colAng1.NW_012115677v1    C 0 C 0
s otoGar3.GL873533           30948792 1 +  31380117 C
i otoGar3.GL873533          C 0 I 1
s canFam3.chr9                5824050 1 -  61074082 C
i canFam3.chr9              I 44 C 0
s dasNov3.JH564958             401783 1 -    584178 C
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9386304 47 +  14477005 I
e cebCap1.NW_016107745v1      1008602 58 -   1842816 I
e saiBol1.JH378108           49806556 41 +  54856640 I
e calJac3.chr10              72425286 40 - 132174527 I

a score=15312.000000
s hg38.chr15_KI270851v1_alt     73002 2 +    263054 AG
s panTro5.chr15              70402725 2 -  83230942 AG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809471 2 +  99763055 AG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12547 2 -    281578 AG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75985211 2 + 121039945 AG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8226192 2 + 169600520 AG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290386 2 - 171882078 AG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463930 2 +   1584492 AA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507484 2 +  58131712 AG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         6056 2 +    138091 AA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035969 2 +   3749464 AG
i colAng1.NW_012115677v1    C 0 C 0
s aotNan1.NW_018502759v1      9386351 2 +  14477005 AG
i aotNan1.NW_018502759v1    I 47 C 0
s otoGar3.GL873533           30948794 2 +  31380117 AG
i otoGar3.GL873533          I 1 C 0
s canFam3.chr9                5824051 2 -  61074082 AG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             401784 2 -    584178 AA
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1008602 58 -   1842816 I
e saiBol1.JH378108           49806556 41 +  54856640 I
e calJac3.chr10              72425286 40 - 132174527 I

a score=134048.000000
s hg38.chr15_KI270851v1_alt     73004 14 +    263054 CTTCTCCATGACTT
s panTro5.chr15              70402727 14 -  83230942 CTTCTCCATGACTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809473 14 +  99763055 CTTCTCCATGACTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12549 14 -    281578 CTTCTCCATGACCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75985213 14 + 121039945 CTTCTCCATGACTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8226194 14 + 169600520 CTTCTCCACGACTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290388 14 - 171882078 CTTCTCCATGACTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463932 14 +   1584492 CTTCTCCATGACTT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507486 14 +  58131712 CTTCTCCGTGACTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         6058 14 +    138091 CTTCTCCATGACTT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035971 14 +   3749464 CTTCTCCATGACTT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72425326 14 - 132174527 CTTCTCTATGGCTC
i calJac3.chr10             I 40 C 0
s saiBol1.JH378108           49806597 14 +  54856640 CTTCTCTATGGCTC
i saiBol1.JH378108          I 41 C 0
s aotNan1.NW_018502759v1      9386353 14 +  14477005 CTTCTCCATGGCCT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30948796 14 +  31380117 TTTCTCCATGTCCA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5824053 14 -  61074082 CTTGTCCATGGCCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             401786 14 -    584178 TTTCTCCATAGCCA
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1008602 58 -   1842816 I

a score=523778.000000
s hg38.chr15_KI270851v1_alt     73018 56 +    263054 CCTGCAGGGC--CCGGTGGGTCTCCCCACTCACAGACTCGCCCCCAGGCCCTGGGGCT
s panTro5.chr15              70402741 56 -  83230942 CCTGCAGGGC--CCAGTGGGTCTCCCCACTCACAGACTCGCCCCCAGGCCCTGGGGCT
i panTro5.chr15             C 0 I 2
s panPan2.chr15              25809487 56 +  99763055 CCTGCAGGGC--CCGGTGGGTCTCCCCACTCACAGACTCGCCCCCAGGCCCTGGGGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12563 56 -    281578 CCTGCAGGGC--CCAGTGGGTCTCCCCACTCACAGACTTGCCCCCAGGCCCTGGGGCT
i gorGor5.CYUI01000141v1    C 0 I 2
s nomLeu3.chr6               75985227 56 + 121039945 CCTGCAAGGC--CCGCTGGGTCTCCCCACTCACAGACTCGCCCCCAGTCCCTGGGGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8226208 56 + 169600520 CCTGCAGGGC--CCGGTGGGTCTCCCCACTCACAGACTCGCCCCCAGTCCCTGGGGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290402 56 - 171882078 CCCGCAGGCC--CCGCTGGGGCTCCCCGATCACAGACTCGCCCCCAGTCCCTGGGGCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1463946 56 +   1584492 CCTGCAGGGC--CCGGTGGGTCCCCCCACTCACAGACTCGCCCCCAGTCCCTGGGGCT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507500 56 +  58131712 TCCACAGGCC--CCGCTGGGGCTCCCTGATCACAGACTTGACCCCAGTCCCTGGGGCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         6072 56 +    138091 CCTGCAGGGC--CCGGTGGGTCTCCCCACTCACAGACTCGCCCCCAGTCCCTGGGGCT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3035985 56 +   3749464 CCTGCAGGGC--CCGGTGGGTCTCCCCACTCACAGACTCGCCCCCAGTCCCTGGGACT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72425340 58 - 132174527 CCTGCAGTGCCTCTGATTGGTCTCCACACACACAGACTGACTCTCAGTCCCTGAGGCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49806611 56 +  54856640 CCTGCAGTGC--GTGATTGGTCTCCCCACACAAAGACTCACTCTCAGTTCctgaggct
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1008660 56 -   1842816 CCTGCAGGGC--CTGCTGGGTCTCCCCATACCCACACTCGCTCCCAGTCCCTGTGGCT
i cebCap1.NW_016107745v1    I 58 C 0
s aotNan1.NW_018502759v1      9386367 56 +  14477005 CCTGTAGGGC--CCGGTGGGTCTCCCCACACACAGAATCGCCCCCAGTCCCCGGGGGC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30948810 56 +  31380117 CCTGTAGGGC--CCGATGGATTTCCCCAGACACAAAGCCATCTCCAATTTCACAGGCA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5824067 50 -  61074082 CCTGAAGGGC--CTGGTGGGTCTCCCCAGGCACACTGTCACCACTGG------GGGCT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             401800 54 -    584178 CCTGTAGGGC--CTGGTGGGTCTCCCCAGACACGCTGTCCCCACCGGTCCCGGGGG--
i dasNov3.JH564958          C 0 C 0

a score=304708.000000
s hg38.chr15_KI270851v1_alt     73074 47 +    263054 G------------------GGACC----GCTGCCTCTGGCTCCTTCTGGGCCGAGGCCACCGGGTGAGC
s panTro5.chr15              70402799 51 -  83230942 A------------------GGGCCTCTGGCTGCCTCTGGCTCCTTCTGGGCCGAGGCCACCGGGTGAGC
i panTro5.chr15             I 2 C 0
s panPan2.chr15              25809543 47 +  99763055 G------------------GGACC----ACTGCCTCTGGCTCCTTCTGGGCCGAGGCCACCGGGTGAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12621 51 -    281578 A------------------GGGCCTCTGGCCACCTCTGGCTCCTTCTGGGCCGAGGCCACCGGGTGAGC
i gorGor5.CYUI01000141v1    I 2 C 0
s nomLeu3.chr6               75985283 47 + 121039945 G------------------GGACC----ACTGCCTCTGGCTCCTTCTGGGCCGAGGCCACCGGGTGAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8226264 47 + 169600520 G------------------GGACC----GCTGCCTCTGGCTCCTTCTGGGCCGAGGCCACCAGGTAAGC
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1464002 47 +   1584492 G------------------GGACC----GCTGCCTCTGGCTCCTTCTGGGCCGAGGCCACCAGGTGAGC
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1         6128 47 +    138091 G------------------GGACC----GCTGCCTCTGGCTCCTTCTGGGCCGAGGCCACCGGGTGAGC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3036041 47 +   3749464 G------------------GGACC----GCTGCCTCTGGCTCCTTCTGGGCCGAGGCCACCAGGTGAGC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72425398 56 - 132174527 GGGGCGGGGGCTG------GGGCC----ACTGCCTCTGGCTCCTGCA---CCGAGGCCACCGGGTGAGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49806667 62 +  54856640 ggggctggggctggggccagggcC----ACTGCCTCTGGCTCCTGCA---CCGAGGCCACCGGGTGAGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1008716 47 -   1842816 G------------------CAGCC----ACTGCCTCTGGCTCCTTCAGGGCCGAGGCCACCGGGTGATC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9386423 44 +  14477005 G------------------GGGCT----GCCGCCTCAGGCTCCTGGG---CGGAGGCCAGCAGGTGAGC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30948866 47 +  31380117 G------------------AGGCT----GTGTCCTCTGGCTTCTTCTGGGCTGGGACCAGCTGGTGAAC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5824117 44 -  61074082 ---------------------GCG----GCCTCCTCCTGCACCTGCTGGCCTGGGGCCACCAGGTGAGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             401854 46 -    584178 -------------------GAGAA----GGGACCTCCAGCCCATGCTGAGATGAGGCCAACTGACGTGC
i dasNov3.JH564958          C 0 C 0
e chlSab2.chr26               7507556  0 +  58131712 C
e macFas5.chr7              170290458  0 - 171882078 C

a score=1494123.000000
s hg38.chr15_KI270851v1_alt     73121 239 +    263054 CAGGCGCTGGCAGCACACCCTCTGCTCTTTCACCTGCTCTTGTAACTGTGCCTGCTTCTCCTGGGCACTAGCTCCAGCGGACTTGAAAAATGCCACCTGAGGGCAAGA----TGTGAGCATTCTTCTAGGGGCATACACAGAAGAAATGG--GGCAGAGAGGTGGAGCGCAGCCCCTTCCC--TTGGGGCCCCAGAGACTGCACATGTTGGTCACAGGTGAAATGGTGTCTG-ACCACTGGCTCTCG--G
s panTro5.chr15              70402850 239 -  83230942 CAGGCGCTGGCAGCACACCCTCTGCTCTTTCACCTGCTCTTGTAACTGTGCCTGCTTCTCCTGGGCACTAGCTCCAGCGGACTTGAGAAATGCCACCTGAGGGCAACA----TGTGACCATTCTTCTAGGGGCATACACAGAAGAAATGG--GGCAGAGAGGTGAAGCGCAGCCCCTTCCC--TTGGGGCCTCAGAGAGTGCACCTGTTGGCCACAGGTGAAATGGTGTCTG-ACCACTGGCTCTCG--G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809590 239 +  99763055 CAGGCGCTGGCAGCACACCCTCTGCTCTTTCACCTGCTCTCGTAACCGTGCCTGCCTCTCCTGGGCACTGGCTCCAGCGGACTTGAAAAATGCCACCTGAGGGCAAGA----TGTGAGCATTCTTGCAGGGGCATACACAGAACAAATGG--GGCAGAGAGGTGGAGCGCAGCCCCTTCCC--TTGGGGCCCCAGAGACTGCACATGTTGGTCACAGGTGAAATGGTGTCTG-AACACCGGCTCCCG--G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12672 239 -    281578 CAGGCGCTGGCAGCACACCCTCTGCTCTTTCACCTGCTCTTGTAACTGTGCCTGCTTCTCCTGGGCACTAGCTCCAGCGGACTTGAGAAATGCCACCTGAGGGCAAGA----TGTGAGCATTCTTCTAGGGGCATACACAGAAGAAATGG--GGCAGAGAGGTGGAGCGCAGCCCCTTCCC--TTGGGGCCTCAGAGAGTGCACCTGTTGGCCACAGGTGAAATGGTGTCTG-ACCACTGGCTCTCG--G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75985330 239 + 121039945 CAAGTGCTGGCAGCACACCCTCTGCTCTTTCACCTGCTCTAATAACCGTGCCTGTCTCTCCTGGGCACTGGCTCCAGCGGACTTGAAAAATGCCACCTGAGGGCAAGA----AGTGAGCATTCTTGTAGGGGCATACACAGAACAAACAG--GGCAGAGAGTTCGAGCGCAGCCCCTTCCC--TTGGGGCCTCAGAGAGTGCACCTGTTGGTCACAGGTGAAATGGTGTCTG-ACCACTGGCTCCCG--G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8226311 239 + 169600520 CAGGTGCTGGCAGTACACCCTCTGCTCTGTCACCCACTCTCGTAACCCTGCCTGCTCCTCCTTGGCACTGGCTCCAGTGGATTTGAAACATGCCACCTGAGGGCAAGA----CGTGAGCATTCTTGTAGGGACATACACAGAAGAAACAG--GGCAGAGAGGTGGAGCGCAGCCCCTTCCC--TTGGGGCCCCAGAGAGTGCACCTTTTGGTCACAGGGGAAATGGGGTCTG-ACCACTGGCTCCCG--G
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1464049 227 +   1584492 CAGGTGCTGGCAGCACACCCTCTGCTCTGTCACCCGCTCTCGTAACCGTGCCTGCTCCTCCTGGGCACTGGCTCCAGCGGATTTGAAAAATGCCACCTGAGGGCAAGA----CGTGAGCATTCTTGTAGGGGCATACACAGAACAAATGG--GGCAGAGGGGTGCAGCGCAGCCCCTTTCC--TTGGGGCCTCAG------------TTCGTCACAGGTGAAATGGGGTCTG-ACCACTGGCTCTCG--G
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1         6175 227 +    138091 CAGGCGCTGGCAGCACACCCTCTGCTCTGTCACCCGCTCTCGTAACCGTGCCTGCTCCTCCTTGGCACTGGCTCCAGCGGATTTGAAAAATGCCACCTGAGGGCAAGA----CGTGAGCATTCTTGTAGGGGCATACACAGAAGAAACGG--GGCAGAGGGGTGGAGCGCGGCCCCTTCCC--TTGGGGCCTCAG------------TTCGTCACAGGTGAAATGGGGTCTG-ACCACTGGCTCCCG--G
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3036088 239 +   3749464 CAGGCGCTGGCAGCACACCCTCTGCTCTTTCACCCGCGCTCGTAACCGTGCCTGCTCCTCCTGGGCACTGGCTCCAGCGGACTTGAAAAATGCCACCTGAGGGCAAGA----GGTGAGCATTCTTGTAGGGGCATACACAGAACAAATGG--GGCAGAAAGGTGGAGCGCAGCCCCTTCCC--TTGGGGCCTCAGAGAGTGCACCTGTTGGTCACAGGGGAAATGGTGTCTG-ACCACTGGCTCTCG--G
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72425454 237 - 132174527 CAGGTGCTGGTAGCACACCCTTTGTTCCTGAGGCTGCACACACAGTTGTTCCTGCTCCTCCTGGGCACCGGCCCCAGCCAAGTTGACAAATGCAACCTAAAGACAAGA----GGTGAACATTCTTGTAGGGGCATACACAGAACAAAC-G--GGCACAGAGGCAGAGTGCAGCCCCTTCCC--TTGGGGCCTCAGAGAATGCA-CTGTTGGTCACAGGTGAAATGGTGTCTG-AGCACTGGCTCCCG--G
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49806729 213 +  54856640 CAGGTGCTGGTAGCACACCCT------------------------TGGTTCCTGCTCCTCCTGGGCACCGGCCCCAGCCGAGTAGAAAAATGCCACCTGAAGGCAAGA----GGTGAACGTTCTTGTAGGGGCACACACAGAACAAAC-G--GGCACGGAGGTGGGGTGCAGCCCCTTCCC--GTGGGGCCTCAGAGAGTGCA-CTGTCAGTCACAGGTGAAATTGTGCCTG-AGCACTGGCTCCCA--G
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1008763 233 -   1842816 CTGGTGCTGGCAGCACACCTGTTGTTTCTGGAGCTGCTCACAGAGCCGTGACTGCTCCTCCTGGGCACCTGCTCCAGCAGCATTCAGAAATGGCACCTGAAGGCAAGA----GGGGAGCATTCTTGTAGGGACATACACAGGACAGACGG--GGCAGGGAGGTGGAGCGCAGCCCCTTCCC--TTGGGGCCTCAGAGAGTGCACCTGTCGGTCAC------GATGGTGTCTG-ACCACTGGCTCCCA--G
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9386467 240 +  14477005 CAGGCGCCGGCAGCGCACCCTTTGCTCCTTCAGCTGCCCACGTAGCTTTGCCTGCTCCTCCTCAGCACTGGCTACAGCCGAATTGAAAAATGCCACCTGCAGGCAAGA----GAGGTGCATTCTTGGATGGGGATACACAGGACGAACAA--GGCAGGGAAGTGGAGAGTAG-CCCTTCCC--CTGGGGCCTCAGAGGCTGCACCTGTTGGTCACAGGTGAAATGGTGTCTG-ATCACTGGCTCCCAGGG
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9                5824161 244 -  61074082 CAGACGCTGGCAGCGCAGCTTCTGCTTCTTCAGCTGCCCGCGCAGCCGTGCCTGCTCCTCCTCAGCACTGGCTAAGGCCGAGTTAAAAAATGCCACCTGCAGGTGAGACATGTGTGTGTGCTCTTGTGGGGG-ATACTCAGGGTGACCAGGTGGCAGGAAGGCAGAGAGAAGCTCCTCCTC--TCCTGGCCTTCGTGGGCACATCTGCGCTTCAAGGATGGTGCCGAGGCTG-ACCGCTGGGTCCCA--T
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             401900 240 -    584178 CAGGTGCTGGCAGCGTAGTTTTTGTTCCTTCAGCTGCCCCCGCAGCTGTGCCTGCTCTTCTTTAGCACCGGCTAGGGCGGAGTTCAAAAATGCCACCTGCAGGCAAAA-------GTGCTTTTATGGAAGGA-ATACTGAGGAAGAGCCTTCAGTAGGAAAGCCAAAGGGAGCCTTTCCCCTGTCTGGGCCTCAGTGTGCTCACCTGTTGGTCAATGGCTGGGGTGTGTCTGAACCACCGGTTCCCA--G
i dasNov3.JH564958          C 0 C 0
e otoGar3.GL873533           30948913   0 +  31380117 C
e chlSab2.chr26               7507556   0 +  58131712 C
e macFas5.chr7              170290458   0 - 171882078 C

a score=419739.000000
s hg38.chr15_KI270851v1_alt     73360 62 +    263054 --AAGGGGTGAGGGTCCAGAGAAATCAGAAGGCAGGGAAA-CGAAGAGCATAAAGGGG-T----CTTGGA
s panTro5.chr15              70403089 62 -  83230942 --AAGGGGTGAGGGTCCAGAGAAATCAGAAGGCAGGGAAA-CGAGGAGCATAAAGGGG-T----CTTGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809829 62 +  99763055 --AAGGGGTGAGGGTCCAGAGAAATCAGAAGGCAGGGAAA-CGAAGAGCATAAAGGGG-T----CTTGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12911 62 -    281578 --AAGGGGTGAGGGTCCAGAGAAATCAGAAGGCAGGGAAA-CGAAGAGCATTAAGGGG-T----CTTGGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75985569 63 + 121039945 --AAGGGGTGAGGGTCCAGAGAAATCAGAAGGCAGGGAAT-CTAAGAGCATAAAGGGGTT----CTTGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8226550 62 + 169600520 --AAGGGATGAGGGCGCAGAGAAATCAGAAGGCAGGGAAA-GTAAGAGCATAAAGGGG-T----CTTGCA
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1464276 62 +   1584492 --AAGGGGTGAGGGTGCAGAGAAATCAGAAGGCAGGGAAA-GTAAGAGCATAAAGGGG-T----CTGGGA
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1         6402 62 +    138091 --AAGGGATGAGGGCACAGAGAAATCAGAAGGCAGGGAAA-GTAAGAGCATAAAGGGG-T----CTTGCA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3036327 63 +   3749464 --AAGGGGTGAGGGTGCAGAGAAATCAGAAGGCAGGGAAACTTAAGAGCATAAAGGGG-T----CTTGGA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72425691 62 - 132174527 --AAGAGGTGAGTGTCCAGAGAAATCAGAAGGTGAAGAAA-CCAAGAGCATAAGGGGG-T----CTGGGA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49806942 62 +  54856640 --AAGAGGTGAGTGTCCAGAGAAATCAGAAGGTCAGGAAA-CCAAGAGCATAAGGGGG-T----CTGGGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1008996 62 -   1842816 --AAGGGGTGAGGGTCCAGAGGAATCAGAAGGTGGAGAAA-CCAAGAGCATAAGGGGG-T----CTGGGA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9386707 56 +  14477005 --AAGGGGTGAGGGTCCAGAAAACTCAGAAGGCCAGGAAA-CCAA------AAGGAGG-T----CTGGGA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30948913 62 +  31380117 --AGGAAGTAGGTGTTAAGAGAAATCAGAGGGCAGGGAAA-CCAAGAGCATGAGGGTC-T----CTGGGA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5824405 62 -  61074082 ---GGGTTTGAGGGTTGAGAGAGGTTGAGGG---AGGGAA-CCAAGAAGAAAGGAGGG-TGCCCCTGGGA
i canFam3.chr9              C 0 I 2
s dasNov3.JH564958             402140 56 -    584178 GGGAGGTGGAGAGATCAAGGGAAGTCAGAGGGCAGGGAAA-CCAAGAGT--------G-A----TTGGCA
i dasNov3.JH564958          C 0 C 0
e chlSab2.chr26               7507556  0 +  58131712 C
e macFas5.chr7              170290458  0 - 171882078 C

a score=177207.000000
s hg38.chr15_KI270851v1_alt     73422 19 +    263054 GGG--ACCACAG--------AGAAAGGTG
s panTro5.chr15              70403151 19 -  83230942 GGG--ACCACAG--------AGAAAGGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809891 19 +  99763055 GGG--ACCACAG--------AGGAAGGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12973 19 -    281578 GGG--ACCACAG--------AGGAAGGTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75985632 19 + 121039945 GGG--ACCACAG--------AGGAAGGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8226612 19 + 169600520 GGG--ACCACAG--------AGGAAGGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290458 19 - 171882078 GGG--ACCACAG--------AGGAAGGTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1464338 19 +   1584492 GGG--ACCACAG--------AGGAAGGTG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507556 19 +  58131712 GGG--ACCACAG--------AGGAAGGTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         6464 19 +    138091 GGG--ACCACAG--------AGGAAGGTG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3036390 19 +   3749464 GGG--ACCACAG--------AGGAAGGTG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72425753  1 - 132174527 ----------------------------G
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49807004 19 +  54856640 GGG--ACCACAG--------AGGAAGGTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1009058 19 -   1842816 GGG--ACCACAG--------AGGAAGGTG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9386763 19 +  14477005 GGG--ACCACAA--------AGGGAGGCA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30948975 26 +  31380117 -GG--ACCACAGTGGGGGCAAGAATGGTG
i otoGar3.GL873533          C 0 I 1
s canFam3.chr9                5824469 21 -  61074082 GGGTTACCACAG--------AGGGAAGCG
i canFam3.chr9              I 2 I 10
s dasNov3.JH564958             402196 19 -    584178 GGG--ACTATAG--------AGGGAGGTC
i dasNov3.JH564958          C 0 C 0

a score=1415459.000000
s hg38.chr15_KI270851v1_alt     73441 181 +    263054 GCAAAATGGGTGCA----------------GGGGGAGTCAGGCTCACCATGGCCTCCCTGCTCTCCAGGTCCTCTGGGACACTCGGCATGGGCCGAGGTGCCTCCT------------C------CCCCTCACTGTC-----------------------------CAGATGT--------------------------------TCTCCTCC--------------------GTGTCC----------------T----GTGGGG---GGTGGCCAGAGGGGTCTT----CAGACAACTCAACAAGGGAAG---TATTGTGGGCC-------------------
s panTro5.chr15              70403170 181 -  83230942 GCAAAATGGGTGCA----------------GGGGGAGTCAGGCTCACCATGGCCTCCCTGTTCTCCAGGTCCTCTGGGACACTCGGCATGGGCTGAGGTGCCTCCT------------C------CCCCTCACTGGC-----------------------------CAGATGT--------------------------------TCTCCTCC--------------------GTGTCC----------------T----GTGGGG---GGTGGCCAGAGGGGTCTT----CAGACAACCCAACAAGGGAGG---TACTGTGGGCC-------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25809910 186 +  99763055 GCAAAATGGGTTCA-----------------GCGGAGTCAGACTTACCATGGCCTCCCTGCTCTCCAGGTCCTCTGGGACACTCGGCATGGGCTGAGGTGCCTCCT-------------------CCCCTCACTGTC-----------------------------CAGATGT--------------------------------TCTCCTCC--------------------GTGTCC----------------TGGGGGTGGGGGGTGGTGGCCAGAGGGGTCCT----CAGACAACTCAACAAGGGAAG---TATTGTGGGCC-------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        12992 180 -    281578 GCAAAATGGGTGCA----------------GGGGGAGTCAGGCTCACCATGGCCTCCCTGTTCTCCAGGTCCTCTGGGACACTCGGCACGGGCTGAGGTGCCTCCT-------------------CCCCTCACTGTC-----------------------------CAGATGT--------------------------------TCTCCTCC--------------------GTGCCC----------------T----GTGGGG---GGTGGCCAGAGGGGTCTT----CAGACAACCCAACAAGGGAGG---TACTGTGGGCC-------------------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75985651 181 + 121039945 GCAAAATGGGTGCA----------------GGGGGAGTCAGGCTCACCGTGGCCTCCCAGCTCTCCAGGGCCTCTGGGACGCTCGGCATGGGCCGAGGTGCCTCCT------------C------CCCCTCACTGTC-----------------------------CAGATGT--------------------------------CCTCCTCC--------------------ATCTCC----------------T----GTGGGG---GGTGGCCAGAAGGGTCCT----CAGACAACCCAACAAGGGAGG---TACCGTGGGCC-------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8226631 178 + 169600520 GTAAAATGGGTGCG----------------GGGGGAGTCAGGCTCACCATGGCCTCCCAGCTCTCCTGGTCCTCTGGGACGCTCGGCATGGGCCGAGGTCCCTCCT------------C------CTCCTCACTGTC-----------------------------CAGATG-----------------------------------TCCTCC--------------------ATCTCC----------------T----GTGGGG---AGTGGCCAGAGGGCTCCT----CAGACAACCCAACAATGGAGG---TACTGTGGGCC-------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290477 181 - 171882078 GTAAAATGGGTGCG----------------GGGGGAGTCAGGCTCACCATGGCCTCCCAGCTCTCCTGGTCCTCTGGGACGCTCGGCATGGGCCGAGGTCCCTCCT------------C------CTCCTCACTGTC-----------------------------CAGATGT--------------------------------TCTCCTCC--------------------ATCTCC----------------T----GTGGGG---AGTGGCCAGAGGGCTCCT----CAGACAACCCAACAAGGCAGG---TACTGTGGGCC-------------------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1464357 181 +   1584492 GCAAAATCGGTGCG----------------GAGGGAGTCAGGCTCACCATGGCCTCCCAGCTCTCCAGGTCCTCTGGGAGGCTCGGCATGGGCTGAGGTGCCTCCT------------C------CTCCGCACTGCC-----------------------------CAGATGT--------------------------------TCTCCTCC--------------------ATCTCC----------------T----GTGGGG---GGTGGCCAGAGGGCTCCT----CAGACAACCCAACAATGGAGG---TACTGTGGGCC-------------------
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507575 181 +  58131712 GCAAAATGGGTGCA----------------GGGGGAGTCAGGCTCACCATGGCCTCCCAGCTCTCCAGGTCCTCTGGGACGCTCGGCATGGGCCGAGGTCCCTCCT------------C------CTCCTCACTGTC-----------------------------CAGATGT--------------------------------CCTCCTCC--------------------ATCTCC----------------T----GTGGGG---AGTGGCCAGAGGGCTCCT----CAGACAACCCAACAAGGCAGG---TACTGTGGGCC-------------------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         6483 181 +    138091 GCAAAATGGGTGCA----------------GGGGGAGTCAGACTCACCATGGCCTCCCAGCTCTCCAGGTCCTGTGGGACGCTCGGCATGGGCTGAGGTGCCTCCT------------C------CTCCTCACTGCC-----------------------------CAGATGT--------------------------------TCTCCTCC--------------------ATCTCC----------------T----GTGGGG---GGTGGCCAGAGGGCTCCT----CAGACAACCCAACAATGGAGG---TACTGTGGGCC-------------------
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3036409 181 +   3749464 GCAAAATGGGTGCG----------------GGGGGAGTCAGGCTCACCATGGCCTCCCAGCTCTCCAGGTCCTCTGGGACGCTCGGCAAGGGCTGAGGTGCCGCCG------------C------CTCCTCACTGTC-----------------------------CAGATGT--------------------------------TCTCCTCC--------------------ATCTCC----------------T----GTGGGG---GGTGGCCAGAGGGCTCCT----CAGACAACCCAACAAGGCAGG---TACTGTGGGCC-------------------
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72425754 186 - 132174527 GCAAAGGAGGGGCA----------------GGGGGAGTCAGGCTCACCATGGCCTCTCGGCTCTCCAGGGCCTCTGCAATGC------TGGGCCGAGGCACCTCCT------------C------CTCCTCACTGTC-----------------------------CAGATGt--------------------------------cctcctcc--------------------atctcctcctcctcctcctccAT----GT-----------GCCAGAGGGATCCG----CACACAACCCAACAAGGGAGGTACTATTGTGGGCC-------------------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49807023 178 +  54856640 GCAAAGGAGGGGCG----------------AGGGGAGTCAGGCTCACCACGGCCTCTGGGCTCTCCAGGGCCTCTGCAATGC------TGGGCCAAGGCACCTCCT------------C------CTCCTTGCTATC-----------------------------CACATGT--------------------------------CCTCCTCC--------------------ATCTCC----------------T----GTGGGG---GGTGGCCAGAGGAGTCCG----CATACAACCCAACAAGGGAGGTGCCACTGTGGGCC-------------------
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9386782 178 +  14477005 GCAAAGGTGGGGCA----------------GGAGGAGTCAGCCTCACCATGGCCTCCCTGCTCTCCAGGTCCTCTGGGATGCTTGGCATGGGCCAAGGCAcctcct------------c------ctcctcctcgtc-----------------------------ctccCTG--------------------------------TCCAGTCC--------------------ATCTCC----------------T----ATTGGG---GGTGGCCAGAGGAGTCAT----CAGACAACCTAACAAGGG------TACAGTGGGCC-------------------
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30949002 274 +  31380117 GACAGAGAAGGGCT----------------GGGAAGATCATGTTTACCATGGCTTCTCGGCTATCTAGGTCCTCCGAGATGCTCAGCATGGGCCTAGAGGcctcctcatctggtacttc------ctcctccttctccactcccttctcctctgcaacctcattctcaggtgtctctgtcttcattgctgcctccttctctgctccctccttctGTCCACCCTTGTCCAATATATCTCC----------------T----ATTGGG---GACAGCCAGAGGGGTCCT----CAGACAACTCAACAAGAGAAA---TAAAGTGGGCC-------------------
i otoGar3.GL873533          I 1 C 0
s canFam3.chr9                5824500 175 -  61074082 ACGAGGAAGGGGCA----------------GCGGGGGTC-TGCTCACCACGGCCTCTCGGCTCTCCAGGTTCTCTGGCATGCTCAGCTTTGGCTGGGCAGCCTCTT------------CTTCCTTCTCCTCACTGTC-----------------------------CAA-----------------------------------------TCC--------------------ATCTCC----------------T----GTCAGG----GCAGATGGAGGG-TCCT----CAGACAACCCAACAGGGGAGG---TAAAGCGGGCC-------------------
i canFam3.chr9              I 10 I 15
s dasNov3.JH564958             402215 217 -    584178 GGAAAGGTGGGGCAGAGACGGAAAGGGCAGGGGCGAGTCAGGCTCACCATGGCCTCTCTGCTATCTAGGTCTTCGGGGATGCTCAGCTCTGGATGATGAGCCTCTT------------CATCCCTTTCCTCACTGTC-----------------------------CAG-----------------------------------------TCG--------------------ATCTCC----------------T----GTTGGG---AGCGGCCAGAGGGCTCCTCAGACAGACAACCCAACAAGGCGGG---TGGAGTGGTCCAGGAAGAAAGCTCACAGCC
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1009077   0 -   1842816 C

a score=243403.000000
s hg38.chr15_KI270851v1_alt     73622 32 +    263054 CACCTCTGCCTCCACCCTCATTGTGTAACCCT
s panTro5.chr15              70403351 32 -  83230942 CACCTCTACCTCCACCCTCACTGTGTAATCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25810096 32 +  99763055 CACCTCTACCTCCACCCTCACTGTGTAACCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        13172 32 -    281578 CACCTCTACCTCCACCCTCACTGTGTAACCCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75985832 32 + 121039945 CACCTGTGCCTCCACCCTCACTGTGTAACCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8226809 32 + 169600520 CACCTCTGCCTCCACCCTCACTGGGTAACCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290658 32 - 171882078 CACCTCTGCCTCCACCCTCACTGGGTAACCCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1464538 32 +   1584492 CACCTCTGCCTCCACCCTCACTATGTAACCCT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507756 32 +  58131712 CAACTCTGCCTCCATCCTCACTGTGTAACCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         6664 32 +    138091 CATCTCTGCCTCCACCCTCACTATGTAACCCT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3036590 32 +   3749464 CACCTCTGCCCCCACCCTCACTGGGTAACCCT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72425940 32 - 132174527 CACCTCTGCCTCCACCCTCACCGTGTAACCCG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49807201 26 +  54856640 CA------CCTCCACCCTCACCGTGTAACCCT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9386960 32 +  14477005 CACCTCTGCCCTCACCTTCACTGTGTAAACCT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30949276 22 +  31380117 CACGT--------AACCTCA-TGTGCGAT-CT
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             402432 31 -    584178 CACCTCTGCCATCA-CCTCACTATGCAACCCT
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9                5824675 15 -  61074082 I
e cebCap1.NW_016107745v1      1009077  0 -   1842816 C

a score=246512.000000
s hg38.chr15_KI270851v1_alt     73654 26 +    263054 GAGCCAGGCCCTCCCCAGAGAGGAAT
s panTro5.chr15              70403383 26 -  83230942 GAGCCAGCCCCTCCCCAGAGAGCAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25810128 26 +  99763055 GAGCCAGGCCCTCCCCAGAGAGGAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        13204 26 -    281578 GAGCCAGCCCCTCCCCAGAGAGGAAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75985864 26 + 121039945 GAGCCAGCCCCTCCCCAGAGAGGAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8226841 26 + 169600520 GAGCCAGCCCCTCCCCAGAGAAGAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290690 25 - 171882078 GAGCCAGCCCCT-CCCAGAGAGGAAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1464570 26 +   1584492 GAGCCAGCCCCTCCCCAGAGAGGAAT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507788 26 +  58131712 GAGCCAGCCCCTCCCCAGAGAGGAAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         6696 26 +    138091 GAGCCAGCCCCTCCCCAGAGAGGAAT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3036622 25 +   3749464 GAGCCAG-CCCTCCCCAGAGAGGAAT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72425972 26 - 132174527 GAGCCAGCCCCTCCCCACAGAGGAAT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49807227 26 +  54856640 GAGTCAGCCCCTCCCCACACAGGAAT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9386992 25 +  14477005 GAGCCAGCCCCTCCCCAGAG-GGAAT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30949298 24 +  31380117 GGGCCAGCCCCTCCCCATA--ATCAT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5824690 26 -  61074082 GGGCCAGTGCATCCCCAGAGAAGAAT
i canFam3.chr9              I 15 C 0
s dasNov3.JH564958             402463 26 -    584178 GGGCCAGCTACTCCCCAGAGGAAAAT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1009077  0 -   1842816 C

a score=58622.000000
s hg38.chr15_KI270851v1_alt     73680 7 +    263054 GAGCTGC
s panTro5.chr15              70403409 7 -  83230942 GAGCTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25810154 7 +  99763055 GAGCTGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        13230 7 -    281578 GAGCTGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75985890 7 + 121039945 GAGCTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8226867 7 + 169600520 GAGCTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290715 7 - 171882078 GAGCTGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1464596 7 +   1584492 GAGCTGC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507814 7 +  58131712 GAGCTGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         6722 7 +    138091 GAGCTGC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3036647 7 +   3749464 GAGCTGC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72425998 7 - 132174527 GAGCTAC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49807253 7 +  54856640 GAGCTAC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9387017 7 +  14477005 GAGCAGC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30949322 7 +  31380117 AAGCTGT
i otoGar3.GL873533          C 0 C 0
e dasNov3.JH564958             402489 0 -    584178 C
e canFam3.chr9                5824716 0 -  61074082 C
e cebCap1.NW_016107745v1      1009077 0 -   1842816 C

a score=292343.000000
s hg38.chr15_KI270851v1_alt     73687 56 +    263054 TGTTATT--------TATTTTTACTTTGA-AGAACCAAGATCTTGCTATACTGCCcaggcacatt
s panTro5.chr15              70403416 56 -  83230942 TGTTCTT--------TATTTTTACTTTTA-AGAATCAAGATCTTGCTATTCCGCCcaggcacact
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25810161 55 +  99763055 TGTTATT--------TA-TTTTACTTTGA-AGAACCAAGATCTTgctattccgcccaggcacact
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        13237 56 -    281578 TGTTCTT--------TATTTTTACTTTTA-AGAATCAAGATCTTgctattccgcccaggcacact
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75985897 55 + 121039945 TGTTCTT--------TATTTTTACTTTTA-AGAACCAAGATCTTGCAATACTG-Tcaggcacatt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8226874 56 + 169600520 TGTTCTT--------TATTTTTACTTTTA-AGAACCAAGATCTTGCTACACTGCCcaggcacagt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290722 56 - 171882078 TGTTCTT--------TATTTTTATTTTTA-AGACCCAAGATCTTGCTATACTGCCcaggcccagt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1464603 56 +   1584492 TGttctt--------tatttttactttta-agaaccaagatcttgctatattgcccaggcacagt
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507821 50 +  58131712 TGTTCTT--------TAT------TTTTA-AGACCCAAGATCTTGCTATACTGCCcaggcacagt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         6729 56 +    138091 TGTTCTT--------TATTTTTACTTTTA-AGAACCAAGATCTTGCTATACCGCCcaggcacagt
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3036654 56 +   3749464 TGTTCTT--------TATTCTTCCTTTTA-AGAACCAAGATCTGGCTATACCGCCcaggcacagt
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72426005 54 - 132174527 TGTTC----------TTTTTTTACTTTTA-AGAACCAAGATCTTGCTGTACTGTCcaggcacagt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49807260 54 +  54856640 TGTTC----------CATTTCTACTTTTG-AAAACCAAGATCTTGCTATACTGTCcaggcacagt
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9387024 65 +  14477005 TTTCCTTAAtttttattttattacttttgcagagccaagggctcactatgttgcccaggtgcagc
i aotNan1.NW_018502759v1    C 0 C 0
s dasNov3.JH564958             402489  4 -    584178 -------------------------------------------------------------CATT
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9                5824716  0 -  61074082 C
e otoGar3.GL873533           30949329  0 +  31380117 C
e cebCap1.NW_016107745v1      1009077  0 -   1842816 C

a score=661121.000000
s hg38.chr15_KI270851v1_alt     73743 100 +    263054 cccactactggtcggtgcgggagttctgacctgctccctttctgacctcggccagttcagccatccttaggcaacttggtggcccc-ccgctcccaggagg
s panTro5.chr15              70403472 100 -  83230942 cccactactggtcgatgtgggagttctgacctgctccctttctgaccttggccagttcagccatccttaggcaacttggtgacccc-ccgctcacaggagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25810216 100 +  99763055 cccactactggtcgatgtgggagttctgacctgctccctttctgaccttggccagttcagccatccttaggcaacttggtgacccc-ccactcccaagagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        13293 100 -    281578 cccactactggtcgatgtgggagttctgacctgctccctttctgaccttggccagttcagccatccttaggcaacttggtgacccc-ccgctcacaggagg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75985952 100 + 121039945 cccactactggtcgatgtgggagttctgacctgctccctttctgacctggcccagttcagccatccttaggcaacttggtggaccc-ccactcacaggagg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8226930 101 + 169600520 cccactaccggtcggtttgggagttctgacctgctccgtttctgacctgggccagttcagccatccttaggcaacttggtggcccccccgctcccaggagg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290778 101 - 171882078 cccactaccggtcggtgtgggagttctgacctgctccatttctgacctgggccagttcagccatccttaggcaacttggtggccccaccgctcccaggagg
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1464659 100 +   1584492 cccactaccggtcggtttgggagttctgacctgttccgtttctgacctgggccagttcagccatccttaggcaacttggtggctcc-ccgctcccaggagg
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507871 101 +  58131712 cccactaccggtcagtgctggagttctgacctgctccctttctgacctgggccagttcagccatccttaggcaacttggtggcccccccgctcccaggagg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         6785 100 +    138091 cccactaccggtcggtttgggagctctaacctgttccgtttctgacctgggccagttcagccatccttaggcaacttggtgg-ccccccgctcccaggagg
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3036710 100 +   3749464 cccactaccggtcggtgcaggagttctgacctgctccctttctgacctgggccagttcagccatccttaggcaacttggtggcccc-ccgctcccaggagg
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72426059  99 - 132174527 gccactaccaattggtgtgggagttctgacccactccctttctgatctgggccagttcacgcttccttaggcaacctggtggcccc-c-acttccaggagg
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49807314  84 +  54856640 cccgctaccaattagtgtgggagttctgacccactccctttctgatctgggccagttcacacttccttaggcaccct-gtggc----------------gg
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9387089 100 +  14477005 cccactacccatcagcacaggagttctaacctgcgccatttctgacctgggccagttcacccatccttaggcaacctggtagtccc-ctgctcccaggaag
i aotNan1.NW_018502759v1    C 0 C 0
e dasNov3.JH564958             402493   0 -    584178 C
e canFam3.chr9                5824716   0 -  61074082 C
e otoGar3.GL873533           30949329   0 +  31380117 C
e cebCap1.NW_016107745v1      1009077   0 -   1842816 C

a score=330021.000000
s hg38.chr15_KI270851v1_alt     73843 51 +    263054 tcaccatattgatgctgaacttagtgcaggcacccggttagtataATGACC
s panTro5.chr15              70403572 51 -  83230942 tcaccacactgatgccgaacttagtgcaggcacccggtcggcataATCACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25810316 51 +  99763055 tcaccatattgatgctgaacttagtgcaggcacccggtcggcataATGACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        13393 51 -    281578 tcaccacactgatgccgaacttagtgcaggcacccggtcggcataATGACC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75986052 49 + 121039945 tcaccaca--aatgccaaacttagtgcaggcacccggtaggcataATGACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8227031 51 + 169600520 tcaccatattggtgtcgaacttagtgcaggcacccggtcagcataATGACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290879 51 - 171882078 tcaccatattgatgccgaacttagtgcaggcacccggtcagcataATGACC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1464759 51 +   1584492 tcaccatattggtgccgaacttagtgcagacatccggttggcataATGACC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7507972 51 +  58131712 tcaccatattgatgccaaacttagtgcaggcacccggtcggcatCATGACC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         6885 51 +    138091 ttaccatattggtgccgaacttagtgcagacacccggtcagcataATGACC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3036810 51 +   3749464 tcaccatattgatgccgaacttagtgcaggcaccctgtcggcataATGACC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72426158 51 - 132174527 tcaccatattgatgccgaacttagtgcggacacctggtcagcataATGACC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49807398 51 +  54856640 tcaccatcttgatgccaaacttagtgaggacacctgttcagcatCATGACC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9387189 51 +  14477005 tcactgtactgatgcccaacttagtgtggacagctggtgagcataATGACC
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9                5824716  4 -  61074082 TCAC-----------------------------------------------
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958             402493  0 -    584178 C
e otoGar3.GL873533           30949329  0 +  31380117 C
e cebCap1.NW_016107745v1      1009077  0 -   1842816 C

a score=20055.000000
s hg38.chr15_KI270851v1_alt     73894 2 +    263054 AG
s panTro5.chr15              70403623 2 -  83230942 AG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25810367 2 +  99763055 AG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        13444 2 -    281578 AG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75986101 2 + 121039945 AG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8227082 2 + 169600520 AG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290930 2 - 171882078 AG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1464810 2 +   1584492 AG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7508023 2 +  58131712 AG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         6936 2 +    138091 AG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3036861 2 +   3749464 AG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72426209 2 - 132174527 AG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49807449 2 +  54856640 AG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9387240 2 +  14477005 AG
i aotNan1.NW_018502759v1    C 0 C 0
s dasNov3.JH564958             402493 2 -    584178 AG
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9                5824720 0 -  61074082 C
e otoGar3.GL873533           30949329 0 +  31380117 C
e cebCap1.NW_016107745v1      1009077 0 -   1842816 C

a score=767252.000000
s hg38.chr15_KI270851v1_alt     73896 88 +    263054 CTGTTCTAAAGGTCTCTTCCAACTCCTCAATCCTATGCTGCTAGCAGT--CCCCCCTTCCTCCTGGGGCTCTCTCCTCTTCCTCTGAGCG
s panTro5.chr15              70403625 88 -  83230942 CTGTTCTAAAGGTCTCTTCCAACTCCTCAATCCTATGCTGCTAGCAGT--CCCCCCTTCCTCCTGGGGCTCTCTCCTCTTCCTCTGAGCG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25810369 88 +  99763055 CTGTTCTAAAGGTCTCTTCCAACTCCTCAATCCTATGCTGCTAGCAGT--TCCCCCTTCTTCCTGGGGCTCTCTCCTCTTCCTCTGAGCG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        13446 88 -    281578 CTGTTCTAAAGGTCTCTTCCAACTCCTCAATCCTATGCTGCTAGCAGT--CCCCCCTTCCTCCTGGGGCTCTCTCCTCTTCCTCTGAGCG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75986103 88 + 121039945 CTGCTCTAAAGGTCTCTTCCAACTCCTCAATCCTATGCTGCTAACAGT--CCCCCCTTCCTTCTGGGGCTCTCTTCTCTTCCTCTGAGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8227084 88 + 169600520 CTGTTCTAAAGATCTCTTCCAACTCCTCAATCCTATGCTGCTAACAGT--CCCCCCTTCCTCCTGGGGCTCTCTCCTCTTCCTCTGAGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170290932 88 - 171882078 CTGTTCTAAAGATCTCTTCCAACTCCTCAATCCTATGCTGCTAACAGT--CCCCCCTTCCTCCTGGGGCACTCTCCTCTTCCTCTGAGTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1464812 88 +   1584492 CTGTTCTAAGGGTCTCTTCCAACTCCTCAATCCTACGCTGCTAACAGT--CCCCCCTTCCTCCTGGGGCTCTCTCCTCTTCCTCTGAGTG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7508025 88 +  58131712 CTCTTCTAAAGGTCTCTTCCAACTCCTCAATCCTACACTGCTAACAGT--CCCCGCTTCCTCCTGGGGCCCTCTCCTCTTCCTCTGAGTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1         6938 88 +    138091 CTGTTCTAAAGGTCTCTTCCAACTCCTCAATCCTACACTGCTAACAGT--CCCCCCTTCCTCCTGGGGCTCTCTCCTCTTCCTCTGAGCG
i manLeu1.NW_012101289v1    C 0 I 7844
s colAng1.NW_012115677v1      3036863 88 +   3749464 CTGTTCTAAAGGTCTCTTCCAAATCCTCAATCCTGTGCTGCTCACAGT--CCCCCCTTCCTCCTGGGGCTCTCTCCTCTTCCTCTGAGTG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72426211 88 - 132174527 CTGTTCTAAAGGTCTCTTCCAACGCCTCAATCCTATGCTGCTAACAGT--CCCCGCTTCCTCTTGGGGCTCTCTCCTCTTCCTCTGAGTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49807451 85 +  54856640 CTGTTCTAAAGGTCTCTTCCAGCGTCTCAATCCTATTCTGCTAAGAGT--CCTCCCTTCCTCTTGGGGCTCT---CTCTTCCGCTGAGTG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9387242 88 +  14477005 CTATTCTAAAGGTCTCTTCCAGCTCCTCAATCCTACGCTGCTAACAGT--CCCCGATTCCTCCTAGGGCTCTCTCCTCTTCCTGTGAGCA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30949329 58 +  31380117 CTGTCCTAGAGGT----------TCCCTGTCCCTGCCTTGCCCCCGGC--TCCCTCCTCACCATGGAACA--------------------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5824720 86 -  61074082 -TGTCCTACAGGTCCCGTCACA---CTTGATTCTGTGCTGCTCAAAGTCACCCCTCCTCCTCCTCGGGCTCTGTCCTCTTCCCCTGGACA
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             402495 82 -    584178 CTGTCCTAAAGGTCTCACATAACTTCTCAATTCTGTGCTACCACAAGT--CCCC------TTCAACAGCCCTCTCCTCTCCCTCTGGACA
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1009077  0 -   1842816 C

a score=8666.000000
s hg38.chr15_KI270851v1_alt     73984 1 +    263054 G
s panTro5.chr15              70403713 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25810457 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        13534 1 -    281578 G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75986191 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8227172 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170291020 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1464900 1 +   1584492 G
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7508113 1 +  58131712 G
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3036951 1 +   3749464 G
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72426299 1 - 132174527 G
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49807536 1 +  54856640 G
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9387330 1 +  14477005 G
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30949387 1 +  31380117 A
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             402577 1 -    584178 G
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9                5824806 1 -  61074082 I
e cebCap1.NW_016107745v1      1009077 0 -   1842816 C
e manLeu1.NW_012101289v1         7026 7844 +    138091 I

a score=601451.000000
s hg38.chr15_KI270851v1_alt     73985 67 +    263054 TCTCC--CGTACCTTCCCCAGGGAGAGCCATGAGGCTCAACTGGGCCGTTAGCTGCTGTTTCTGCTGGC
s panTro5.chr15              70403714 67 -  83230942 TCTCC--CGTACCTTCCCCAGGGAGAGCCATGAggctaggctgggctgttagctgctggttctgctggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25810458 67 +  99763055 TCTCC--CGTACCTTTCCCAGGGAGAGCCATGAGGCTAAGCTGGGCTGTTAGCTGCTGGTTCTGTTGGC
i panPan2.chr15             C 0 I 174
s gorGor5.CYUI01000141v1        13535 67 -    281578 TCTCC--CGTACCTTCCCCAGGGAGAGCCATGAGGCTCAGCTGGGCTGTTAGCTGCTGGTTCTGCTGGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75986192 67 + 121039945 TCTCC--CGTACCTTCCCCAAGGAGAGCCATGAGGCTCAACTGGGCCGTTAGCTGCTGTTTCTGCTGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8227173 67 + 169600520 TCTCC--GGTACCTTCCCCAGGGAGAGCCGTGAGGTTCAACGGGGCATTCAGCTGCTGGCTCTGCTGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170291021 67 - 171882078 TCTCC--CATACCTTCCCCAGGGAGAGCCATGAGGCTCAGTTGGTCCTGCAGCTGCTGATTCTGCTGCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1464901 67 +   1584492 TCTCC--GGTACCTTCCCCAGGGAGAGCCGTGAGGTTCAACGGGGCATTCAGCTGCTGGCTCTGCTGGC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7508114 67 +  58131712 TCTCC--CGTACCTTCCCCAGGGAGAGCCATGAGGCTCAGTTGGTCCTGCAGCTGCTGATTCTGCTGCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1        14870 67 +    138091 TCTCC--CGTACCTTCCCCAGGGAGAGCCGTGAGGTTCAACGGGGCATTCAGCTGCTGGCTCTGCTGGC
i manLeu1.NW_012101289v1    I 7844 C 0
s colAng1.NW_012115677v1      3036952 67 +   3749464 TCTCC--CGTACCTTCACCAGGGAGAGCCATGAGGCGCAGCTGGGCCGTTAGCTGCTGATTCTGCTGGC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72426300 67 - 132174527 TCTCC--CATACCTTCCCCAGGAAGAGTCATGAGGCCCAGCTGGTCCTGTGGCTGCTGGTTCTCCTGGG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49807537 67 +  54856640 TGTCC--CATACCTTCCCCAGGAAGAGCCGTGAGGCTCAGCTGGTTCTGTGGCTGCTCGTTCTCCTGGG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9387331 67 +  14477005 GTTCC--CGTACCTTCCCCAGGGAGAGCTATGAGGCTCAACTGGGCTCGTAGCTGCTGGTTATGCTGGC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30949388 67 +  31380117 TCTCA--CTTACCCTTCCCAGGCTCGGCCATTAGGCTCAGCTGGGCCTGCAGCTGCTGGTTCTGCTGTC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5824807 69 -  61074082 TCTCCTACTCACCTTCCCCAGGCATAGCCATGAGGCTCAGCTGGGCCTGGAGCTGCTGGTTCTGCTGGG
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             402578 67 -    584178 ACCCA--CTTACCTTCCTCAGGCAAAGCCATCACACCCAACTGGGCCTGTAGCTGCTGGTTCTGCTGGT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1009077  0 -   1842816 C

a score=1633605.000000
s hg38.chr15_KI270851v1_alt     74052 174 +    263054 TGGCAGCTTCCAGGCGCTCCTAAGGGGCCAGGA--A--AG--A----GTGAGAAGGCACAGAGTTTGCCAGGTCGTCCCCCTCACGGCCCCA-TC-CTCGGCAGCTCCC-TCCCCTGGGCCTCCTGCAACTTTTGGCAGGCCATCTCGGCCACCGCTTTGCCCCAAGCTTCCTGCTGCTGCAGCTGG
s panTro5.chr15              70403781 174 -  83230942 tggctgctTCCAGGCGCTCCTAAGGGGCCAGGA--A--AG--A----GTGAGAAGGGATGGAGTTTGCCAGGTCGTCCCCCTCACAGCCCCA-TC-CTCCGCAGCTCCC-TCCCCTGGGTCTCCTGCAACTTTCGGCAGGCCATCTCAGCCACTGCTTTGCCCCAAGCTTCCTGCTGCTGCAGCTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73909228 176 -  99763055 TGGCAGCTTCCAGGTGCTCCTAAGGGGCCAGGA--AAGAG--A----GTGAGAAGGCACGGAGTTTGCCAGATCATCCCCCTTAGGGCCCCG-CC-CTCATCAACTCCC-TCAACCGGGTCTCCTGCAACTATCGGTGGGCCATCTTGGCCACCGCTTCGCCCTGAGCTTCCTGCTGCTGCAGCTGG
i panPan2.chr15             n 174 I 24
s gorGor5.CYUI01000141v1        13602 174 -    281578 TGGCAGCTTCCAGGCGCTCCTAAGGGGCCAGGA--A--AG--A----GTGAGAAGGGATGGAGTTTACCAGGTCGTCCCCCTCACAGCCCCA-TC-CTCGGCAGCTCCC-TCCCATGGGTCTCCTGCAACTTTTGGCAGGCCATCTCGGCCACTGCTTTGCCCCAAGCTTCCTGCTGCTGCAGCTGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75986259 173 + 121039945 -GGCAGCTTCCAGACGCTCCTAAGGGGCCAGGA--A--AG--A----GTGAGAAGGCACAGAGTTTGCCAGGTCGTCCCCCTCACAGCGCCG-TC-CTCGGCAGCTCCC-TCCCCTGGGTCTCCTGCAACTTTTGGCGGGCCATCTCGGCCACCGCTTTGCCCCAAGCTTCCTGCTGCTGCAGCTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8227240 174 + 169600520 TGGAAGCTTCCAGGCACTCCTAAGGGGCCAGGA--A--AG--A----GTGAGAAGGCATGGAGTTTGCCAGGTCGTCCCCCTCATAGCCCCA-TC-CTCAGCAGCTCCC-TCCCCTGGGTCTCCTGCAACTTTTGGCGGGGCATCTCGGCCACCGCTTTGCCCCAAGCTTCCTGTTGCTGCAGCTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170291088 174 - 171882078 TGGCAGCCTCCAGGTGCTCCTAAGGGGCCAGGA--A--AG--A----GTAAGAAGGCATGGAGTTTGCCAGGTCGTCCCCCTCATGGCCCCG-TC-CTCAGCAGGTCCC-TCCCCTGGGTCTCCTACAACTTTTGGCGGGCCATCTCGGCCACCGCTTTGCCCCAAGCTTCCTGCTGCTGCAGCTGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1464968 174 +   1584492 TGGAAGCTTCCAGGCGCTCCTAAGGGGCCAGGA--A--AG--A----GTGAGAAGGCACGGAGTTTGCCAGGTCGTCCCCCTCACAGCCCCA-TC-CTCAGCAGCTCCC-TCCCCTGGGTCTCCTGCCACTTTTAGCGGGCCATCTCGGCCACCGCTTTGCCCCAAGCTTCCTGCTGCTGCAGCTGG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7508181 174 +  58131712 TGGCAGCCTCCAGGTGCTCCTAAGGGGCCAGAA--A--AG--A----GTAAGAAGGCACGGAGTTTGCCAGGTCGTCCCCCTCACGGCCCCG-TC-CTCAGCAGCTCCC-TCCCCTGGGTCTCCTGTAACTTTCCGCGGGTCATCTCGGCCACCGCTTTGCCCCAAGCTTCCTGCTGCTGCAGCTGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1        14937 174 +    138091 TGGAAGCTTCCAGGCACTCCTAAGGGGCCAGGA--A--AG--A----GTGAGAAGGCACGGAGTTTGCCAGGTCGTCCCCCTCACAGCCCCA-TC-CTCAGCAGCTCCC-TCCCCTGGGTCTCCTGCAACTTTTGGCGGGCCATCTCGGCCACCGCTTTGCCCCAAGCTTCCTGCTGCTGCAGCTGG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3037019 174 +   3749464 TGGCAGCTTCCAGGTGTTCCTAAGGGGCCAGGA--A--GG--A----GTGAAAAGGCACAGAGTTTGCCAGGTCGTCCCCCTCACGGCCCTG-TC-CTCAGCAGCTCCT-TCCCCTGGGTCTCCTGCAACTTTTGGCAGGCCATCTCCGCCACCGCTTTGCCCCAAGTTTCCGGCTGCTGCAGCTGG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72426367 176 - 132174527 TGGCAGCTTCCAGGTGCTCCTAAGGGGCCAGGA--A--AGGAA----GTGAGAAGGCACAGAGGTTGCCAGGTCATCCCCCTCAGGGCCCCA-TC-CTCAGCAACTCCC-TCCCCTGGGTCTCCTGCAACTTTTGGCGGGCCATCTCGGCTACTGCTTTGCCCCGAGCTTCCTGCTGCTGCAGCTGG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49807604 175 +  54856640 TGGCAGCTTCCAGGTGCTCCTAAGGGACCAGGA--A--AGGAA----TCAAGAAGGCAAAGAGGTTGCCAGGTCATCCCCCTCGGGGCCCCA-TC-CTCAGCAACTGCC-TCCCCTGGGTCTCCTGCAACTGTTGGTGGGCCATCTCGGCTACTGCTTTGCCCCGAGCTTCCTGCTGCT-CAGCTGG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9387398 175 +  14477005 TGACAGCTTCCAGGCGCTCCTAATGGGCCAGGA--A--AGAGA----GTGAGAAGGCACAGAGGTTGCCAGGTCGT-ACCCTCAGGGCCCTG-CC-CTCAGCAACTCCC-TCACCTGGGTTTCCTGCAACTCTTGGCTGGCCATGTCAGCCACCGCTTTGCCCTGAGCTTCCTGCTGCTGCAGCTGG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30949455 179 +  31380117 TGGCAGCTTCTAGGCGCTCCTAAGTGGCCACAA--A--AG--AGGATGTGACAGCCTCCTGCAGCTGTCACATCCTCCCACTCAGGGGCCTAGCC-CTTAGCAAATCCC-TCACCTGGGTCTCCTGCAATTCGTGGAGGGCCACCTCAGCTGCCACTGCACCCTGAGCTTTCTCTTGTTGCAGCTGC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5824876 171 -  61074082 TGGCAGATTCCAGGCGTCCCTGAGGGGCCAGGA--A--AG--A----GTGAGAAGGGATGCGGGTAG-CAGGCCCT-CCCCTCGGGGCCCAG-TA-CTCG--AACTCCCTTCACCTGGGTCTCCTGTAACTCTTGGAGGGCTTTCTCGGCCGCCACCTTGCCCTGAACTTCCTCATGCTGCAGCCGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             402645 177 -    584178 TGGCAGCTTCCAGGCGCTCCTAAGAGGCCAGGATTG--AG--A----ATGAGAAAGGGCACCCGTTACTGGGTCCTCCTACTTAGGGACCCA-GCACTCAGCAACTCCC-TTACCTGGGTCTCCTGTAATTCCTGGCGAATCATCTCGGCCATGGCCTTGCCCTGAACTTCCTCATGCTGCAGCCGG
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1009077   0 -   1842816 C

a score=182431.000000
s hg38.chr15_KI270851v1_alt     74226 18 +    263054 TTCATTAGCTGGGTCTGC
s panTro5.chr15              70403955 18 -  83230942 TTCATTAGCTGGGTCTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25810699 18 +  99763055 TTCATTAGCTGGGTCTGT
i panPan2.chr15             I 174 C 0
s gorGor5.CYUI01000141v1        13776 18 -    281578 TTCATTAGCTGGGTCTGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75986432 18 + 121039945 TTCATTAGCTGGGTCTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8227414 18 + 169600520 TTCATTAGCTGGGTCTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170291262 18 - 171882078 TTCATTAGCTGGGTCTGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1465142 17 +   1584492 TTCATTAGCTGGGTC-GC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7508355 18 +  58131712 TTCATTAGCTGGGTCTGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1        15111 18 +    138091 TTCATTAGCTGGGTCTGC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3037193 18 +   3749464 TTCATTAGCTGGGTCTGC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72426543 18 - 132174527 TTCATGAGCTGGGTCTGT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49807779 18 +  54856640 TTCATGAGCTGGGTCTGT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9387573 18 +  14477005 TCCACGAGCTGGGTTTGC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30949634 18 +  31380117 TCCATGGCCTGGGTCTGC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5825047 18 -  61074082 TCCATGAGCTGAGTCTGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             402822 18 -    584178 TCCATGAGCTGAGTTTGC
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1009077  0 -   1842816 C

a score=500204.000000
s hg38.chr15_KI270851v1_alt     74244 61 +    263054 TGCAGTCACTGCCTGTACAGCGCCTCCTTCTCACAGGTCAGCTGCTGATAGGCGGCCACCT
s panTro5.chr15              70403973 61 -  83230942 TGCAGTCACTGCCTGTACAGCGCCTCCTTCTCACAGGTCAGCTGCTGATAGGCGGCCACCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25810717 61 +  99763055 TGCAGTCACTGCCTGTACAGCGCCTCCTTCTCACAGGTCAGCTGCTGATAGGCGGCCACCT
i panPan2.chr15             C 0 I 350
s gorGor5.CYUI01000141v1        13794 61 -    281578 TGCAGTCACTGCCTGTACAGCGCCTCCTTCTCACAGGTCAGCTGCTGATAGGCGGCCACCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75986450 61 + 121039945 TGCAGTCACTGTCTGTGCAGCGCCTCCTTCTCAGAGGTCAGCTGCTGGTAGGTGGCCACTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8227432 61 + 169600520 TGCAGTAACTGCCTGTGCAGCGCCTCCTTCTCAGAGGTCAGCTGCTGATAGGCGGCCACCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170291280 61 - 171882078 TGCAGTAACTGCCTATGCAGCGCCTCCTTCTCAGAGGTCAGCTGCTGATAGGCGGCCACCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1465159 61 +   1584492 TGCAGTAACTGCCTGTGCAGCGCCTCCTTCTCAGAGGTCAGCTGCTGATAAGTGGCCGCCT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7508373 61 +  58131712 TGCAGGAACTGCCTGTGCAGCGCCTCCTTCTCAGAGGTCAGCTGCTGATAGGCGGCCACCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1        15129 61 +    138091 TGCAGTAACTGCCTGTGCAGCGCCTCCTTCTCAGAGGTCAGCTGCTGACAAGCGGCCACCT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3037211 61 +   3749464 TGCAGTAACTCCCTGTGCAGCGCCTCCTTCTCAGAGGTCAGCTGCTGATAGGCGGCCACCT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72426561 40 - 132174527 AGCAGTAACTGCCTGTGCAGTGCCTCCTTCTCAGAGGTCA---------------------
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9387591 61 +  14477005 AGCAGCAACTGATTGTGCAGCGCCTCCTTCTCAGAGGTCAGCTGCTGATAGGCAGCCACCT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30949652 61 +  31380117 TGTAGGAGCTCCCTGTGCAGCGACTCCTTCTCTGACATCAGTTGCTGATAGGTGTTTGCGT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5825065 59 -  61074082 AGCAGCACCTGCTTGTGCAGCAGCTCCTTGTCGGAAGCCAGCTGCTGGTAGGCGGCCAT--
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             402840 61 -    584178 AGCAGTAACTGCTTGTGCAGCATCTCCTTCTCGGTGGCCAGCTGCTGATAGGCACCCATGT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1009077  0 -   1842816 C
e saiBol1.JH378108           49807797  0 +  54856640 C

a score=1464220.000000
s hg38.chr15_KI270851v1_alt     74305 188 +    263054 GCTGCTGATAGGTGGCCACGTACTGCTGCAGGTGACCCAGGTAATGGTCTGGCTGCTGCTGCAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGTGTGAGGGCACGTGGTGGCTGGTTTCCAGATTCTGGGCCCATTAATAG-----GGTAGCGAG----------------------GGCACTGTGGGGCTCTGTC
s panTro5.chr15              70404034 188 -  83230942 GCTGCTGATAGGTGGCCACGGACTGCTGCAGGTGACCCAGGTAATGGTCTGGCTGCTGCTGCAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGTGTGAGGGCACGTGGTGGCTGGTTTCCAGATTCTGGGCCCATTAATAG-----GGTAGCGAG----------------------GGCACTGTGGGGCTCTGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73909428 180 -  99763055 GCTGCTGATAGGCGGCCACGTACTGCTGCAGGTGACCCAGGTAATGGTCTCGCTGCTGCTGCAGACTC--AGCCTCTTGGCTCTTCAGCTCCACCTGCAGGA------TAGGCGTCAGGGTAGGTAGTGGCTAGCTTCCAGATTCTGGGCCCATAAACAG-----GGTAGTGAG----------------------GGCACTGCGGGGCTCTGTC
i panPan2.chr15             I 24 C 0
s gorGor5.CYUI01000141v1        13855 193 -    281578 GCTGCTGATAGGTGGCCACGGACTGCTGCAGGTGACCCAGGTAATGGTCTGGCTGCTGCTGCAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGTGTGAGGGCACGTGGTGGCTGGTTTCCAGATTCTGGGCCCATTAATAGGTAGCGGTAGCGAG----------------------GGCACTGTGGGGCTCTGTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75986511 186 + 121039945 GCTGCTGATAGGTGCCCACGTACTGCTGCAGGTGACCCAGGTAATGGTCTGGCTGCCACTGCAGACTG--AGCCTCTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGTGTGAGGGCACGTGGTGGCTGGCTTCCAGATTCTGGGCCCATTAATAG-----GGTAGCGAG----------------------GGCACTGTGGGGCTCTGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8227493 188 + 169600520 GCTGCTGATAGGTGGCCACAGACTGCCGCAGGTGACCCAGGTAATGGTCTGGCTGCTGCTGCAGACTCTGAGCCTCTTGGCTCTTCAGCTCTACCTGCAAGAAGACCGTGGGTGTGACGGCACGTGGTGGCTGGCTTCCAGATTCTGGGCCCATTAATAG-----GGTCTCCAG----------------------GGCACTGTGGGGCTCTGAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170291341 188 - 171882078 GCTGCTGATAGGTGGCCACGGACTGCTGCAGGTGACCCAGGTAATGGTCTGGCTGCTGCTGCAGACTCTGAGCCTTTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGTGTGAGGGCACGTGGCGGCTGGCTTCCAGATTCTGGACTCATCAATAA-----GGTAGTGAG----------------------GGCACTGTGGGGCTCTGTC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1465220 187 +   1584492 GCTGCTGATAGATGGCTACGGACTGCTGCAGGTGA-CCAGGTAATGGTCTGGTTGCTGCTGCAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCTACAAGAAGACCGTGGGTGTGACGGCACGTGGCGGCTGGCTTCCAGATTCTGGGCCCATTAATAG-----GGTCTCCAG----------------------GGCACTGTGGGGCTCTGTC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7508434 188 +  58131712 GCTGCTGATAGGTGGCCACGGACTGCTGCAGGTGACCCAGGTAATGGTCTGGCTGCTGCTGCAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGTGTGAGGGCATGTGGCGGCTGGCTTCCAGATTCTGGACTCATCAATAA-----GGTAGTGAG----------------------GGCACTGTGGGGCTCTGTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1        15190 188 +    138091 GCTGCTGATAGATGGCCACGGACTGCTGCAGGTGACCCAGGTAATGGTCTGGCTGCTGCTGCAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCTGCAGGAAGACCGTGGGTGTGACGGCAGGTGGCGGCTGGCTTCCAGATTCTGGGCCCATTAATAG-----GGTCTCCAG----------------------GGCACTGTGGGGCTCTGTC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3037272 183 +   3749464 GCTGCTGATAGGTGGCCACGTACTGCTGCAGGTGACCCAGGTAACAGTCTGGCTGCTGCTGCAGACTCTGAGCCTGTTGGCTCTTCAGCTCCAC-----GGAAGACCCTGGGTGTGAGGGCACATGGTGGCTGGCTTCCAGATTCTGGGCCCATTAATAG-----GGTAGCGAG----------------------GGCACTGTGGGGCTCTGTC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72426601 182 - 132174527 GCTGCTTATAGGTGGCCACGTACTGCTGTAGGTGACCCAGGTACTGGTCTCACTGCTGCTGCAGACTCTGAGCCTCTTGGCTTTTCAGCTCTACCTGCAGGAAGACCCTGGATGTGACAGTGTGTGGTGGCTGGCTGCCAGATT-TGGGTACATTCATAG-----GGTAGCCAG----------------------GACACTATGGGGCT-----
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9387652 181 +  14477005 GCTGCTGATAGGCGGCCACGTACTGCTGCAGGTGTCCCAGGTACTGGTCTCGCTGCTGCTGCAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCTGCAGGAAGATCCTGGGTGTGAGGGCAGGTGGTGGCTGACTTCCAGATTCTGGGCCCATAAATAG-----GGTAGCAAG----------------------GGCACGCTGGGG-------
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30949713 173 +  31380117 GCTGCTGATAGGCAGCCACATACTGATGCAGGTAAATCAGATACTGATCTCTCTCCTGCTGTAGACTCTTCGCCTCTTCATTCTTCAGTTCCACCTGCAGGAAGACCCTGGACGTGAGGGAAGGTGGTAGCCTACTTCCAGACTCTAAGCCC-------------AGTAGTGGG----------------------GGCACTGTGGGG-------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5825124 138 -  61074082 -------------------ATACTGCTGCAGGTGGCTCATGTACTGGTCCCGCTGCTGCTGTAGATTCTGAGCCTCCTGGCTCTTCAGCTCCACCTGTGGGAAGACCCAGGGACTAA-----------GGCTGGCACCC--------------------G-----TGCTGAGAG----------------------GAAAGCGGGAGGCTCTGCG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             402901 208 -    584178 GCTGCTGATAGGTGGCCACATACTGCTGCAGGTGGCTCAGGTACTGGTCCCGCTGCTCCTGCAGACCCTGAGCCTCTTTGCTCTTTAGCTCCACCTGCGGGAAGACCCTGGAAGTGAGGGTGAGCCGTGGACTGCTTCCAGACTCTGCGCCC--CGAGAG-----GGAAGGGGGATACAGAAGTCTGCTCAGTGCAGAAATGGTAAGGCTCTGCT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1009077   0 -   1842816 C
e saiBol1.JH378108           49807797   0 +  54856640 C

a score=675059.000000
s hg38.chr15_KI270851v1_alt     74493 101 +    263054 GCCTGCCCAGGC------CCCTGGC-CCCTTACTCCAGG-CCTAAGT----GACTGCCTCCCTTTCCTAGAACCCCATGCCT-CCTTCCCCAGCCTCAAATCTCATGTCC-TCTT
s panTro5.chr15              70404222 100 -  83230942 AGCTACCCAGGC------CCCTGTC-CCCTTACTCCAGG-CCTAAGT----GACTGCCTCCCTTTCCTAGAACCCCATGCCT-CCTTCCCCAGCCTCAAATCTCATACCC-TCT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73909608 108 -  99763055 GCCTATCCAGGCCCCTGGCCCTGGC-CCCTTCCTCCAGG-CCTAAAT----GACTGCCTCCCTTGCCTAGAGGCCCATGCCT-CCCTCCCCAGCCTCAAATCTCACACCCTTCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        14048 100 -    281578 AGCTACCCAGGC------CCCTGTC-CCCTTACTCCAGG-CCTAAGT----GACTGCCTCCCTTTCCTAGAACCCCATGCCT-CCTTCCCCAGCCTCAAATCTCATACCC-TCT-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75986697 101 + 121039945 ACTGGCCCAGAC------CCCTGGC-CCCTTGCTCCAGA-CCTAAGT----GACTGCCTCCCTTTCCTAGAACCCCATGCCT-CCTTCCCCAGCCTCAAATCTCATACCC-TCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8227681 101 + 169600520 ACCTGCCCAGGA------CCCTCGC-CCCTTACTCCAGG-CCTAAGT----GACTGCCTCCCTTTCCTAGAACCCCATGCCT-CCTTTCCCAGGCTCAAATCTCATACCC-TCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170291529 101 - 171882078 GTCTTCCCAGGC------CGCTGGC-CCCTTGCTCCAGG-CCTAAGT----GACTGCCTCCCTTTCCTAGAACACCATGCCT-CCTTCCTCAGCCTCAAATCTCATACCC-TCCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1465407 101 +   1584492 ACCTGCCCAGGA------CCGTCGC-CCCTTACTCCAGG-CCTAAGT----GACTGCCTCCCTTTCCTAGAACCCTATGCCT-CCTTCCCCAGGCTCAAATCTCATACCC-TCCT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7508622 101 +  58131712 GTCTTCCCAGGC------CCCTGGC-TCCTTGCTCCAGG-CCTAAGT----GACTGCCTCCCTTTCCTAGAACACCATGCCT-CCTTCCTCAGCCTCAAATCTCACACCC-TCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1        15378 101 +    138091 ACCTGCCCAGGA------CCGTCGC-CCCTTACTCCAGG-CCTAAGT----GACTGCCTCCCTTTCCTAGAACCCTATGCCT-CCTTCCCCAGGCTCAAATCTCATACCC-TCCT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3037455 101 +   3749464 GCCTGCCCAGGC------CCCTGGC-TCCTTACTCCAGG-CCTAAGT----GACTGTCCCCCTTTCCTAGAACCCCATGCCT-CCTTCCCCAGCCTCAAATCTCATACCC-TCTT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72426783  97 - 132174527 --CTGCCCA-------------GGC-CCCTGGCTCCAGG-CCTAAGAGACTGACTGACTCCCTTGCCTAGAACCCCATCTCT-CCTTCCCCAGCCTCAAATCTCATGTCCTTCTT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1009077 101 -   1842816 GCCTGCCCAGGT------GCCTGGC-CCCTGGCTCCA-G-CCTAAGA----GACTGCCTCCCTTGCCTAGAACCCCATGCCT-CCTTCCCCAGCCTCAAATCTCATGTCCTTCCT
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9387833  87 +  14477005 ---------------------TGAC-CCCTTGCTCCAGG-CCTAAAT----GACTGCCTACCTTGCTTAGAGCCTCATGCCT-CCTTCCCCATCCTCAAATCTTACACCCTTGTT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30949886  81 +  31380117 ----------------------------CTTGCTCCAGG-CCTGACT----GGCCATCTCCCTTGCACAGAGCCCTGTTCCTGCCTCACTCAACCTCAGACCCCATAACC-TTTT
i otoGar3.GL873533          C 0 I 148
s canFam3.chr9                5825262 103 -  61074082 GCCCGCCCAGGC------CCCTGGCTTCCTCGCTCTAGGACTTCAGT----GACTGCCCCTATATCCAGGGACCCACACTTC-CCTTACCCTTCCTCATGCCTCATGACC-ACCT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             403109  62 -    584178 GCCTGCCCAGGC------CCTGGCC-TCCTTGCATAAGG-CCCTAGC-------------------CTCACACCTCACAACT-CTTTTCT-------------------------
i dasNov3.JH564958          C 0 C 0
e saiBol1.JH378108           49807797   0 +  54856640 C

a score=33003.000000
s hg38.chr15_KI270851v1_alt     74594 6 +    263054 CCCACC
s panPan2.chr15              73909716 6 -  99763055 CCCACC
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               75986798 6 + 121039945 CTCACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8227782 6 + 169600520 CTCACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170291630 5 - 171882078 -TCACC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1465508 5 +   1584492 -TCACC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7508723 5 +  58131712 -TCACC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1        15479 5 +    138091 -TCACC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3037556 6 +   3749464 CTCACC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72426880 6 - 132174527 CCCACC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1009178 6 -   1842816 TCCACC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9387920 6 +  14477005 CCCACC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30950115 6 +  31380117 cccacc
i otoGar3.GL873533          I 148 I 129
s canFam3.chr9                5825365 4 -  61074082 TCTA--
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             403171 6 -    584178 CTCATC
i dasNov3.JH564958          C 0 C 0
e panTro5.chr15              70404322 0 -  83230942 C
e gorGor5.CYUI01000141v1        14148 0 -    281578 C
e saiBol1.JH378108           49807797 0 +  54856640 C

a score=365631.000000
s hg38.chr15_KI270851v1_alt     74600 60 +    263054 -ATTTCAACTGTAGGCCACAGAATGGTAGAAAAGTAGTGGGAGCCAACC----ACCATCTG--------CTAA
s panPan2.chr15              73909722 60 -  99763055 -ATTTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGAGGGAGCCAACC----ACCATCTG--------CTAA
i panPan2.chr15             C 0 I 1928
s nomLeu3.chr6               75986804 60 + 121039945 -ATTTCAACTGTAGGCCACAGACTGTTGGAAAAACAGTGGGAGCCAACC----accatctg--------ctag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8227788 60 + 169600520 -ATTTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGTGGGAGCCAGCC----GCCATCTG--------CTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170291635 60 - 171882078 -ATTTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGTGGGAGCCAGCC----accatctg--------ctaa
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1465513 60 +   1584492 -ATTTAAACTGTAGTCCACAGACTGGTGGAAAAGCAGTGGGAGCCagct----gccatctg--------ctaa
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7508728 60 +  58131712 -ATTTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGTGGGAGCCAGCC----Gccatctg--------ctaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1        15484 60 +    138091 -ATTTAAACTGTAGTCCACAGACTGGTGGAAAAGCAGTGGGAGCCagct----gccatctg--------ctaa
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3037562 60 +   3749464 -ATTTAAACTGTAGGCCACAGATTGCTGGAAAAGCAGTGGGAGCCAACC----actatgtg--------ctaa
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72426886 60 - 132174527 -ATTTAAACTATAGGCCACAGACTGGTGGAAAAGCAGAGGGAGCCAACC----accatgtg--------ctaa
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1009184 60 -   1842816 -ATTTAAACTGTAGGCCACAGACTAGTGGAAAAGCAGAGGGCGCTGACC----accatctg--------ccaa
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9387926 60 +  14477005 -ATTTAAACTGTAGGCCACAGACTGGTGGAAACACAGAGGGAGTCAACC----ACCATCTG--------CTAC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30950250 64 +  31380117 -ATTTCAATTTTAGGCCTCAGAAAGAAGGAAATGCAAAGGGAGCCAATCGGCAagcatctg--------ttga
i otoGar3.GL873533          I 129 I 2
s canFam3.chr9                5825369 55 -  61074082 --TTTTCACTTTAG------------TGGAAAAGCAAAGTGCGCCCATG----GACATCTGAGTGCGCCCTGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             403177 53 -    584178 CTTTTAACTTTTAGGCCAGAGACTGGTGGAAAAGCA----GAACCAAC-----ACCATATG--------C---
i dasNov3.JH564958          C 0 C 0
e panTro5.chr15              70404322  0 -  83230942 C
e gorGor5.CYUI01000141v1        14148  0 -    281578 C
e saiBol1.JH378108           49807797  0 +  54856640 C

a score=202439.000000
s hg38.chr15_KI270851v1_alt     74660 44 +    263054 Atgtgctac-aggcctaatgcttcccatgtattatctcatttaat
s panTro5.chr15              70404322 11 -  83230942 ----------------------------------tctcatttaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25811128 44 +  99763055 Atgtgctac-aggcctaatgcttcccatgtattatctcatttaat
i panPan2.chr15             I 350 C 0
s gorGor5.CYUI01000141v1        14148 11 -    281578 ----------------------------------tctcatttaat
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75986864 44 + 121039945 gtgtgctac-aggcctaatgctttccatgtattatctcatttaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8227848 44 + 169600520 gtgtgctac-aggcctagtgctttccgtgtattatctcatttaat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170291695 45 - 171882078 gcgtgttaagaggcctagtgctttccatgtattatctcatttaat
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1465573 44 +   1584492 gtgtgctac-aggcctaatgctttccatgtattatctcatttaaa
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7508788 44 +  58131712 gcatgttag-aggcctagtgctttccatgtattagctcatttaat
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1        15544 44 +    138091 gtgtgctac-aggcctagtgctttccgtgtattatctcatttaat
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3037622 44 +   3749464 gtgtgctac-ctgcctaatgctttccatgtattatctcatttaat
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72426946 40 - 132174527 gtgtgctac-atgcctaatgcttt-cacatatca---catttcat
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1009244 44 -   1842816 gtgtgctac-atgcctaatgctttccacgcatcatctcatttaat
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9387986 44 +  14477005 GTGTGCTAC-ATGCCTAACGCTATCCACGTATTATTTCATTTAAT
i aotNan1.NW_018502759v1    C 0 I 114
s otoGar3.GL873533           30950316 44 +  31380117 gcacactaa-atgcctgataccttgtatgtattatctcatttaat
i otoGar3.GL873533          I 2 C 0
s canFam3.chr9                5825424 34 -  61074082 ----------ATGCCTCACACtacaggcatgct-tctcatttaat
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             403230 16 -    584178 --------------------CTTGACATGCATTAAT---------
i dasNov3.JH564958          C 0 C 0
e saiBol1.JH378108           49807797  0 +  54856640 C

a score=129969.000000
s hg38.chr15_KI270851v1_alt     74704 17 +    263054 cctcagcacctctgtaa
s panTro5.chr15              70404333 17 -  83230942 cctcagcacctctgtaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25811172 17 +  99763055 cctcagcacctctgtaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        14159 17 -    281578 cctcagcacctctgtaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75986908 17 + 121039945 ccccagcacctctgtca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8227892 17 + 169600520 ccacagcacctctgtaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170291740 17 - 171882078 cctcagcacctctgtaa
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1465617 17 +   1584492 ccacagcacctctgtaa
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7508832 17 +  58131712 cctcagcacctctgtaa
i chlSab2.chr26             C 0 I 15
s manLeu1.NW_012101289v1        15588 17 +    138091 ccacagcacctctgtaa
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3037666 17 +   3749464 cctcagcacctctgtaa
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72426986 17 - 132174527 cctcagcacctccacaa
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1009288 17 -   1842816 cctcagcacccacgcaa
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533           30950360 17 +  31380117 cctcaacacctctctga
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5825458 17 -  61074082 tcttgacacctgggcag
i canFam3.chr9              C 0 I 91
s dasNov3.JH564958             403246  9 -    584178 --------CCTCTGTGA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9388030 114 +  14477005 I
e saiBol1.JH378108           49807797  0 +  54856640 C

a score=162872.000000
s hg38.chr15_KI270851v1_alt     74721 27 +    263054 -ggaaaatgctaacttccttttgaagtt
s panTro5.chr15              70404350 27 -  83230942 -ggaaaatgccaacttccctttgaagtt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25811189 27 +  99763055 -ggaaaatgctaacttctttttgaagtt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        14176 27 -    281578 -ggaaaatgctaacttccctttgaagtt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75986925 27 + 121039945 -ggaaaatgctaactttcttttgaagtg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8227909 27 + 169600520 -ggaaaatgctaactttcttttaaagtt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170291757 27 - 171882078 -ggaaaatgctaacttccttttgaagtt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1465634 27 +   1584492 -ggaaaatgctaactttcttttaaagtt
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        15605 27 +    138091 -ggaaaatgctaacttccttttaaagtt
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3037683 27 +   3749464 -ggaaaatgctaacttccttttgaagtt
i colAng1.NW_012115677v1    C 0 I 298
s calJac3.chr10              72427003 26 - 132174527 -ggaaaacactaactt-cttttgaaatg
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1009305 27 -   1842816 -ggaaaatgctaacttactttggaagtt
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533           30950377 22 +  31380117 -ggaaagtgctaACGTTTGTTTG-----
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             403255 28 -    584178 GGAAAAATGCTAATCTCCTTGTCAAGTT
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9                5825475 91 -  61074082 I
e aotNan1.NW_018502759v1      9388030 114 +  14477005 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49807797  0 +  54856640 C

a score=494768.000000
s hg38.chr15_KI270851v1_alt     74748 88 +    263054 aaagaaacagagacttagagatgcgaagtacttgAATGGTGACCAGTGGAACTGAGG-CTGGAATCC-AGTTTTAATCTAAGGAGTCttt
s panTro5.chr15              70404377 88 -  83230942 aaagaaacagagacttagagatgcaaagtacttgaatggtgaccagtggaaccgagg-ctggaatcc-agTTTTAATCTAAGGAGTCttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25811216 88 +  99763055 aaagaaacagagacttagagatgcaaagtacttgAATGGTGACCAGTGGGACTGAGG-CTGGAATCC-AGTTTTAATCTAAGGAGTCttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        14203 88 -    281578 aaagaaacagagacttagagatgcaaagtacttgAATGGTGACCAGTGGAACCGAGG-CTGGAATCC-AGTTTTAATCTAAGGAGTCttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75986952 86 + 121039945 aaagaaac--agacttagagatgcaaagtacttgAATGGTGACCAGTGGAACCGAGG-CTAGAATCC-AGTTTTAATCTAAGGAGCACtt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8227936 88 + 169600520 aaagaaacagaaacttagagatgcaaagtacttgAATGGTGACCAGTGGAACCAAGG-CTGGAATCC-AGTTGTAACATAAGGAGCCttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170291784 88 - 171882078 aaagaaacagagacttagagatgcaaagtacttgAATGGTGACCAGTGGAACTGAGG-CTGGAATCC-AGTTTTAATCTAAGGAGCCttt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1465661 88 +   1584492 aaagaaacagaaacttagagatgcaaagtacttgaatggtgaccagtggaaccaagg-ctggaatcc-agTTGTAACATAAGGAGCCTTT
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        15632 88 +    138091 aaagaaacagaaacttagagatgcaaagtacttgaatggtgaccagtggaaccaagg-ctggaatcc-agTTGTAACATAAGGAGTCttt
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3038008 89 +   3749464 aaagaaaCAGAGACTTAGAGATGCAAAGTACTGGAATGGTGACCAGTGGAACCGAGGTTTGGAATCC-AGTTTTAATCTAAGGAGCCttt
i colAng1.NW_012115677v1    I 298 C 0
s calJac3.chr10              72427029 88 - 132174527 aaagaaacagagacttaaagatgcaaagAAGTTCAGTGGTGATCAGCAGAACCGACG-CCAGAATTC-AGTTTGAATCTAAGAAGCCttt
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1009332 88 -   1842816 aaagaaacagagactgagagatgcaaagtAGTTGAATGGTGACCAGTGGAATCAAGG-CCGGAATCC-AATTTGGATCTAAGGAGACTTT
i cebCap1.NW_016107745v1    C 0 C 0
s dasNov3.JH564958             403283 80 -    584178 AAAGAAAATGATGCTTAGAGATG---------TGAATAGTGACCAGTGCAGCCAAAA-GGAGAATTCAAGTTGGAATCCAAGGAGCCTCC
i dasNov3.JH564958          C 0 I 231
e canFam3.chr9                5825475 91 -  61074082 I
e aotNan1.NW_018502759v1      9388030 114 +  14477005 I
e otoGar3.GL873533           30950399  0 +  31380117 C
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49807797  0 +  54856640 C

a score=306850.000000
s hg38.chr15_KI270851v1_alt     74836 63 +    263054 ------------------t------tgttttgttttgagaca-gagtgtcactctgtggcccaggccggagtgcagtggtgcaatctc
s panTro5.chr15              70404465 64 -  83230942 ------------------t------tgttttgttttcagacaagagtgtcactctgtggcccaggctggagtgcagtggtgcaatctc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25811304 63 +  99763055 ------------------t------tgttttgttttgagaca-gagtgtcactctgtggcccaggccggagtgcagtggtgcaatctc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        14291 64 -    281578 ------------------t------tgttttgttttcagacaagagtgtcactctgtggcccaggctggagtgcagtggtgcaacctc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75987038 63 + 121039945 ------------------t------tgttttgttttgagaca-gagtgtcactctgtggcccaggctggagtgcagtggtggaatctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8228024 63 + 169600520 ------------------t------tgttttgttttgagaca-gagtgtcactctgtggcctaggctagagtgcagtggtgcaatctc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170291872 63 - 171882078 ------------------t------tgttttgttttgagaca-gagtgtcactctgtggcccaggctggagtgcagtggtgcaatctc
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1465749 63 +   1584492 ------------------G------TGttttgttttgagaca-gagtgtcactctgtggcctaggctagagtgcagtggtgcaatctc
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        15720 63 +    138091 ------------------t------tgttttgttttgagaca-gagtgtcactctgtggcctagactagagtgcagtggtgcaatctc
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3038097 63 +   3749464 ------------------t------tgttttgttttgagaca-gagtgtcactctgtggcccaggctggagtgcagtggtgcaatctc
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72427117 63 - 132174527 ------------------tttg---tgttttgttttgagaca-gagtatcactctgga---cactctggagggcagtggtgcaatctc
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1009420 87 -   1842816 CAttttgttttgctttgatttgatttgttctgttttgagaca-gagtgtcattctgtggcccaggctggaaagtcgtggtgcaaactc
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533           30950399 35 +  31380117 ----------------------------TTTGTTTT-----A-GCTTTT-------------------gagtgcaatggctcaaccat
i otoGar3.GL873533          C 0 C 0
e dasNov3.JH564958             403363 231 -    584178 I
e canFam3.chr9                5825475 91 -  61074082 I
e aotNan1.NW_018502759v1      9388030 114 +  14477005 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49807797  0 +  54856640 C

a score=515530.000000
s hg38.chr15_KI270851v1_alt     74899 87 +    263054 agctcactgcaacctccacctcctgggctcaagcaattctcgtgcctcagcctcctgagtaggtgggattacaggcatgcgccacca
s panTro5.chr15              70404529 87 -  83230942 agctcactgcaacctccacctcctgggttgaaacaattctcgtgcctcagcctcccgagtaggtggaattacaggcattcgccacaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25811367 87 +  99763055 agctcactgcaacctccacctcctgggctcaagcaattctcgtgcctcagcctcctgagtaggtgggattacaggcatgcgccacca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        14355 87 -    281578 agctcactgcaacctccacctcctgggttgaagcaattctcatgcctcagcctcccgagtaggtggaattacaggcatgcgccacaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75987101 87 + 121039945 agctcactgcatcctccatttcctgggctcaagcgattctcgtgcctcagcctcctgagtaggtgggattacaggcatgcaccacca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8228087 87 + 169600520 agctcactgcaacctccaccacctgggctcaagagattctcatgcctcagcctcctaagtaggtgggattacaggcatgcaccacca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170291935 87 - 171882078 agctcactgcaacctccacctcctgagctcaagtgattctcgggcctcagcctcctgagtaggtgggattacaggcatgagccacca
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1465812 87 +   1584492 agctcactgcaacctccacctcctgggctcaagagattctcatgcctcagcctcctgagtaggtgggattacaggcatgcaccacca
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        15783 87 +    138091 agctcactgcaacctccacctcctgggctcaagagattctcatgcctcagcctcctgagtaggtgggattacaggcatgcaccacca
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3038160 87 +   3749464 agctcattgcaacctccacctcctgggctcaggcgattcccatgcctcagcctcctgagtaggtgggattacaggcatgctccacca
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72427180 86 - 132174527 agctcactgcaaccttcacctcctgggctcaagcgat-tttgtgcctcagcctactgagtagctgggattacaggcatgcgccacca
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1009507 87 -   1842816 agctcaccgcaacctccagctcccgggctcaagcgatgctcatgcctcagccccctgagtagctgggattactggtgtgcaccacca
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533           30950434 87 +  31380117 agctcacttcaacctcaaactcctgggctcaagtgaacctccagcctcagcctcctgagtagctgggactacagtcatgggccacca
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5825566 36 -  61074082 agcctgcttctccctctgcct--------------------gtgtctctgcctctc-------------------------------
i canFam3.chr9              I 91 C 0
e dasNov3.JH564958             403363 231 -    584178 I
e aotNan1.NW_018502759v1      9388030 114 +  14477005 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49807797  0 +  54856640 C

a score=-11538.000000
s hg38.chr15_KI270851v1_alt     74986 48 +    263054 ccatgccccactaatttttcttcctttttttgttttttgtttttgtaa-----------
s panTro5.chr15              70404616 29 -  83230942 ---tgccctgctaattttt--------------tttttgttttt--aa-----------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25811454 45 +  99763055 ccatgccccactaatttttcttccttttttg--tttttgttttg-taa-----------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        14442 36 -    281578 ---tgccctgctaattttt------tttttt--ttttttttttt-taa-----------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75987188 36 + 121039945 ---tgcctggttaattttt------tttttt--ttttttttttg-taa-----------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8228174 32 + 169600520 ---tgcccgt----tttgt------ttgttt--gtttgtttttg-taa-----------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292022 35 - 171882078 ---tgccaggct-actttt------tttttt--ttttttttttg-taa-----------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1465899 24 +   1584492 ---tgcccgt------------------ttt--gtttgtttttg-taa-----------
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        15870 28 +    138091 ---tgcccgt--------t------ttgttt--gtttgtttttg-taa-----------
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3038247 30 +   3749464 ---tgtccag----ctaat------t--ttt--ttttttttttg-taa-----------
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1      1009594 33 -   1842816 ---cgcccag---ctttgt------tgtggt--ggtagtggttg-taa-----------
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533           30950521 20 +  31380117 -------------------------cggctg--gctaatttttc-aaa-----------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5825602 34 -  61074082 ----------------tct------ctctct--ctctgtttctc-tcatgaataagtaa
i canFam3.chr9              C 0 I 141
e dasNov3.JH564958             403363 231 -    584178 I
e aotNan1.NW_018502759v1      9388030 114 +  14477005 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49807797  0 +  54856640 C
e calJac3.chr10              72427266  0 - 132174527 C

a score=526350.000000
s hg38.chr15_KI270851v1_alt     75034 107 +    263054 ttttagtagagatgaggttttaccatgttggccaggctgatctcaaactccaaacctcaagtgattctcctgcctcagcctcccaaagtgttggcactataggcgta
s panTro5.chr15              70404645 107 -  83230942 ttttagcagagatgaggttttaccacattggccaggctgatctcaaactccccacctcaagtgattctcctgcctcagcctcccaaagtgctgggattataggcatg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25811499 107 +  99763055 ttttagtagagatgaggttttaccatgttggccaggctgatctcaaactcccaacctcaagtgattctcctgcctcagcctcccaaagtgttggcactataggcgta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        14478 107 -    281578 ttttagcagagatgaggttttaccacattggccaggctgatctcaaactcccgacctcaagcgattctcctgcctcagcctcccaaagtgctgggattataggcatg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75987224 107 + 121039945 ttttagtagagataaggttttatcatgttggccaggctgatctcaaactcccgacctcaactgattctcctgcctcagcctcccaaagtgctgggattataggcatg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8228206 102 + 169600520 ttttagtagagatg-----ttaccatgttggccaggctgatctcaaactcccgacctcaagtgattctcctgcctcagcctcccaaagtgctgagattataggcgtg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292057 106 - 171882078 ttttagtagagatgaggttttacaatgttggccaggctgatcttgaact-ccgacctcaagtaattctcctgcctcagcctcccaaagtgctgggattataggcgtg
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1465923 102 +   1584492 ttttagtagagatg-----ttaccatgttggccaggctgatctcaaactcccaacctcaagtgattctcctgcctcagcctcccaaagtgctgagattataggcgtg
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        15898 102 +    138091 ttttagtagagatg-----ttaccatgttggccaggctgatctcaaactcccaacctcaagtgattctcctgcctcagcctcccaaagtgctgagattataggcctg
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3038277 107 +   3749464 ttttagtagagatgaggttttaccatgttggccaggctgatctcaaactcccaacctcaagagattctcctgcctcagcctcccaaagtggtgggattataggcctg
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1      1009627 107 -   1842816 ttttagtagagatgaggtttcgccatgttggccaggctgatttcaaactcctgatcttaagtgattctcctgcctcagcctcccaaagtgctcggattacaggggtg
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533           30950541 107 +  31380117 tttttgtagagattatatcttgctacattgcccatgctgttcttaaattcctagcttcaagcaatcgtcctgtctcagtctcccaaagtgctgggatgacaggggta
i otoGar3.GL873533          C 0 C 0
e dasNov3.JH564958             403363 231 -    584178 I
e canFam3.chr9                5825636 141 -  61074082 I
e aotNan1.NW_018502759v1      9388030 114 +  14477005 I
e chlSab2.chr26               7508849  15 +  58131712 I
e saiBol1.JH378108           49807797   0 +  54856640 C
e calJac3.chr10              72427266   0 - 132174527 C

a score=51709.000000
s hg38.chr15_KI270851v1_alt     75141 8 +    263054 agccaccg
s panTro5.chr15              70404752 8 -  83230942 agccactg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25811606 8 +  99763055 agccaccg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        14585 8 -    281578 agccactg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75987331 8 + 121039945 agccacca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8228308 8 + 169600520 agccaccg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292163 8 - 171882078 agccaccg
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466025 8 +   1584492 agccaccg
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        16000 8 +    138091 agccactg
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3038384 8 +   3749464 agccacca
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49807797 8 +  54856640 AGCCACCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1009734 8 -   1842816 agccactg
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533           30950648 8 +  31380117 agccactg
i otoGar3.GL873533          C 0 C 0
e dasNov3.JH564958             403363 231 -    584178 I
e canFam3.chr9                5825636 141 -  61074082 I
e aotNan1.NW_018502759v1      9388030 114 +  14477005 I
e chlSab2.chr26               7508849 15 +  58131712 I
e calJac3.chr10              72427266 0 - 132174527 C

a score=130585.000000
s hg38.chr15_KI270851v1_alt     75149 33 +    263054 ------------cgtctggcAT---------------------------------------------AAGAAGACTG------TTATACCACTCTG--
s panTro5.chr15              70404760 31 -  83230942 ------------cacctgCTAT---------------------------------------------AAGGAGCCTG------TTATAGCACT--G--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25811614 33 +  99763055 ------------cgtctggcAT---------------------------------------------AAGAAGACTG------TTATACCACTCTG--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        14593 31 -    281578 ------------cacctggTAT---------------------------------------------AAGGAGCCTG------TTATAGCACT--G--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75987339 31 + 121039945 ------------tgcctggcAT---------------------------------------------AAGGAGCCTG------TTATACCACT--G--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8228316 31 + 169600520 ------------tgcctggcAC---------------------------------------------AAGGAGCCTC------TTATCCCACT--G--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292171 31 - 171882078 ------------tgcctggcAT---------------------------------------------AAGGAGCCTC------TTATCCCACT--G--
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466033 31 +   1584492 ------------tgcctggcAT---------------------------------------------AAGGAGCCTC------TTATCCCACT--G--
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        16008 31 +    138091 ------------cgcctggAAT---------------------------------------------AAGGAGCCTC------TTATACCACT--G--
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3038392 31 +   3749464 ------------tgcctggcAT---------------------------------------------AAGGAGCCTC------TTATACCACT--G--
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72427266 31 - 132174527 ------------tgcctagcAT---------------------------------------------AAGGAGCCTC------TTACACCACT--G--
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49807805 31 +  54856640 ------------TGCCTAGGCT---------------------------------------------AAGGAACCTC------TTATACCACC--G--
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1009742 31 -   1842816 ------------cacccagcAT---------------------------------------------AAAGAGCCTC------TCATACCACT--G--
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533           30950656 96 +  31380117 tggccagccAGATGTTAAGTATTTGAAAACAACCAGTGGAGCCGAGACCAGAATCCAGTCTAAATCCAAGGATCCTCACTTAATCATACCACT--CAG
i otoGar3.GL873533          C 0 C 0
e dasNov3.JH564958             403363 231 -    584178 I
e canFam3.chr9                5825636 141 -  61074082 I
e aotNan1.NW_018502759v1      9388030 114 +  14477005 I
e chlSab2.chr26               7508849 15 +  58131712 I

a score=1292731.000000
s hg38.chr15_KI270851v1_alt     75182 179 +    263054 TCTCTTCCCCTGTGATT-GGGGGTGCTCCATGTCTCTAGCTGGAATGATGATGTCCAGACCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAA-TCAGAGGGCAGGAAGCAAGAAACAG------CCACAGGACTGCCCTGGAGGGTGCTGGGGTCACCTG----CCCCCGGGCTGGA-GCTGCCTCTGGCC
s panTro5.chr15              70404791 178 -  83230942 TCTCTTCCCCTGTGATT-GGGGG--CTCCATGCCTCTAGCTGGGATGATGATGTCCAGACCTGAGAGGAGCCCAGGGATACCCACCTTTAAAAGTCAGAGG-CAGGAAGCAAGAAACAG------TCACAGGACTGCCCTGGGGGGTGCTGTGGTCACCAG----ACCCCAGGCTGGAAGCTGCCTCTGGCC
i panTro5.chr15             C 0 N 0
s panPan2.chr15              25811647 179 +  99763055 TCTCTTCCCCTGTGATT-GGGGGGGCTCCATGTCTCCAGCTGGAATGATGATGTCCAGACCTGGGAGGAGCCCAGGGCTACCCACCTTTAAAA-TCAGAGGGCAGGAAGCAAGAAACAG------CCACAGGACTGCCCTGGAGGGTGCTGGGGTCACCTG----CCCCCGGGCTGGA-GCTGCCTCTGGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        14624 177 -    281578 TCTCTTCCCCTGTGATT-GGGGG--CTCCATGCCTCTAGCTGGGATGATGATGTCCAGACCTGAGAGGAGCCCAGGGCTA-CCACCTTTAAAAGTCAGAGG-CAGGAAGCAAGAAACAG------TCACAGGACTGCCCTGGGGGGTGCTGTGGTCACCAG----CCCCCAGGCTGGAAGCTGCCTCTGGCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75987370 179 + 121039945 TCTCTTCCCCTATGATT-GGGGG-GCTCCATGGCTCTAGCTGGGATGATGATGTCCAGACCTGGGAGGAGCCCAGGGCTACCCACTTTTAAAATTCAGAGGGCAGGAAGCAAGAAACAG------CCATAGGACTGCCCTAGAGGGTGCTGGGGTCACCTG----CCCCCAGGCTGGA-ACTGCCTCTGTCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8228347 177 + 169600520 TCTCTTCCCCTATGACT-GGGGG--CTCCATGCCTCTAGCTGGGATGATGATTTCCAGACCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAAGTCAGAAGGCAGGAAGGAAGAAATAG------TCACAAGACTGCCCTGGAGGGTGCTGGGGTAACCTG----CCCCCAGGCTGCA-GCTGCCTC-GGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292202 178 - 171882078 CCTCTTCCCCTATGATTGGGGGG--CTCTATGCCTCTAGCTGGGATGATGATGTCCAGACCTGGGAGGAGCCCAAGGCTACCCACCTCTAAAAGTCAGAGGGCAGGAAGCAAGAAACAG------TCTCAGGACTGCCCTGGAGGGTGGTGGAGTCACCT-----CCCCCAGGCTGGA-GCTGCTTCTGGCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466064 178 +   1584492 TCTCTTCCCCTATGACT-GGGGG--CTCCATGCCTCTAGCCGGGATGACGATTTCCAGACCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAAGTCAGAAGGCAGGAAGGAAGAAATAG------TCACAAGACTGCCCTGGAGGGTGCTGGGGTAACCTG----GCCCCAGGCTGCA-GCTGCCTCTGGCC
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        16039 178 +    138091 TCTCTTCCCCTGTGACT-GGGGG--CTCCATGCCTCTAGCTGGGATGATGATGTCCAGACCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAAGTCAGAAGGCAGGAAGGAAGAAATAG------TCACAAGACTGCCCTGGAGGGTGCTGGGGTAACCTG----GCCCCAGGCTGCA-GCTGCCTCTGGCC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3038423 179 +   3749464 TGTCTTCCCCTATGATTGGGGGG--CTCCATGCCTCTAGCTGGGATGACGATTTCCAGACCTGAGAGGAGCCCAGGGCTACCCACCTCTAAAAGTCAGAAGGCAGGAAGGAAGAAACAG------TCACAAGACTGCCCTGGAGGGTGCTGGGGTCACCTG----CCCCCAAGCTGCA-GCTGCCTCTGGCC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72427297 179 - 132174527 CCTCTTTTCCTGTGATTGGGGGG--CTCCATGCCTCTAGCTGGGGTGATAATGCATAGACCTGGGAGGAGCCCAGGGCTATGCACCTCTAAAAGTCAGAGGGCAGAAAACAAGAAACGG------TGACAGGACTGTCCTGAAGGGTGCTGGGGTCACCTG----CCCTCAGGCAGAA-GCTGCCTTTGGTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49807836 177 +  54856640 CCTCTTTATCTGTGACT-GGGGG--CTCCACGCCTCTAGCTGGGATGATAATGTGTAGACCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAAGTGAGAGGGCAGAAAGCAAGAAACGG------TGACAGGACTGT-CTGAAGGGTGCTGGGTTCACCTG----CCCTCAGGCTGGA-GCTGCCTTTGGCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1009773 178 -   1842816 TCTCTTGCCCTATGACTGGGGGG--CTCCATGCCTCGAGCTGGGATGATGATGTCCAGACCTGGGAGGAGCCCAGGGCTACCCGCCTCTAAAAGTCAGAGGGCAGGAAGCAAGAAACGG------TCACAGGACTGCCCTGGAGGGTG-TGGGGTCACCTG----CCCCCAGGGTGGA-GCTGCCTGTGGCC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9388144 177 +  14477005 TCTCTTTCCCTATGATT-GGGGG--CTCCATGCCTCTAGCTGGAATGATGATGTCCAGACCT--GAGGAGCCCAGGGCTATCCACTTCTAAAAGTCTGAGAGCAGGAAGCAAGAAACAG------TCACAGGACTTCCCTGGAGGGTGCTGAGGTCACCTGT---CCCCTCAGCTGGA-GCTGCTTCTGGCC
i aotNan1.NW_018502759v1    I 114 C 0
s otoGar3.GL873533           30950752 157 +  31380117 GTGATCATGATGTGATAGGGGTG--CTCAGTACCTCTAGCTAGGATGATCATTTCCAGACCTCGGAGAAACCCAGGACTACC--------------------CAGGGAGTGATAA---G------TCACAGACCTGTTCTGCAGGTCTCTGAGGTCATGTAT---CCCTCAGTCTAGA-GCTGCGTCTGCCC
i otoGar3.GL873533          C 0 I 5
s canFam3.chr9                5825777 174 -  61074082 tctcttgaccTC--GTT-AGGGG--CCTGAGCTCTCTAGCCAGGACGAGGACCTTCAG------------CCCAGGGATACCCACTCTGTAGAGTCAGACAGCTGGGAGTGACAAGGGGCCTGCACCACAGGCAGGATTGGAAGGACTCTGGAGTCAGGTGTCCCCCCACAGGCTGGA-GCTGCACCATCCT
i canFam3.chr9              I 141 C 0
e dasNov3.JH564958             403363 231 -    584178 I
e chlSab2.chr26               7508849  15 +  58131712 I

a score=8784.000000
s hg38.chr15_KI270851v1_alt     75361 2 +    263054 TG
s panTro5.chr15               9308464 2 +  83230942 TG
i panTro5.chr15             N 0 C 0
s panPan2.chr15              25811826 2 +  99763055 TG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        14801 2 -    281578 TG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75987549 2 + 121039945 TG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8228524 2 + 169600520 TG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292380 2 - 171882078 TG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466242 2 +   1584492 TG
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        16217 2 +    138091 TG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3038602 2 +   3749464 TG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72427476 2 - 132174527 TC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49808013 2 +  54856640 TC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1009951 2 -   1842816 TT
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9388321 2 +  14477005 TC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30950914 2 +  31380117 TG
i otoGar3.GL873533          I 5 C 0
s canFam3.chr9                5825951 2 -  61074082 GG
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958             403363 231 -    584178 I
e chlSab2.chr26               7508849 15 +  58131712 I

a score=1726257.000000
s hg38.chr15_KI270851v1_alt     75363 222 +    263054 GCACCTCCCCTCCCCAGAGGCTGGT--GCCCACCTCCC-AGACCTTCTTGGATGGGGTGGAG-----GTTACCGTCTCCTTCACCTTGCCTAGCTTCTCCTGCAGCTC------------------------CTTTACTTGCTGCTCCAACTGTAGTACGCT---------CTTGTTCTCATTGTTCTGGACAGAG-AGAAGCAATCAGCAGCCACCCACTGCAGCTGGAGACCCCAGAACTTGGTGACTGCCTCCCATGGCAC
s panTro5.chr15               9308466 222 +  83230942 GCACCTCCCCTCCCCAGAGGCTGGT--GCCCACCTCCC-AGACCTTCTTGGATGGGGTGGAG-----GTTACCGTCTCCTTCACCTTGCCTAGCTTCTCCTGCAGCTC------------------------CTTTACTTGCTGCTCCAACTGTAGTACGCT---------CTTGTTCTCATTGTTCTGGACAGAG-AGAAGCAATCAGCAGCCACCCACTGCAGCTGGAGACCCCAGAACTTGGCGTCTGCCTCCCATGGCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25811828 222 +  99763055 GCACCTCCCCTCCCCAGAGGCTGGT--GCCCACCTCCC-AGACCTTCTTGGATGGGGTGGAG-----GTTACCGTCTCCTTCACCTTGCCTAGCTTCTCCTGCAGCTC------------------------CTTTACTTGCTGCTCCAACTGTAGTACGCT---------CTTGTTCTCATTGTTCTGGACAGAG-AGAAGCAATCAGCAGCCACCCACTGCAGCTGGAGACCCCAGAACTTGGTGTCTGCCTCCCATGGCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        14803 222 -    281578 GCACCTCCCCTCCCAAGAGGCTGCT--GCCCGCCTCCC-AGCCCTTCTTGGATGGGGTGGAG-----GTTTCCGTCTCCTTCACCTCACCAAGCTTCTCCTGTAGCTC------------------------CTTTACTTGCTGCTCCAACTGCAGTGCGCT---------CTTGTTCTCATTGTTCTGGACAGCG-AGAAGCAATCGGCAGCCACCCACTGCAGCTGGAGACCCCAGAACTTGGTGTCTGCCTCCCATGGCAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75987551 215 + 121039945 GCACCTCCCCTCCCCAGA-GCTGGT--GCCTGTCTCCC-AGCCCTTTTTGGATGGGGTGCGA-----GTTACCGTCTC---CACCTCGCCAAGCTT---CTGAAGCTC------------------------CTTTACTTGCGGTTCCAACTGCAGTGCACT---------CTTGTTCTCGTTGTTCAGGACAGAG-AGAAGCAATCAGCAACCACCCACTGCAGCTGGAGACCCCAGAATTTGGTGTCTTCCTCCCATGGCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8228526 221 + 169600520 GCACACCCC-TCCCCAGAGGCTGGT--GCCCGCCTCCC-AGCCCTTCTTGGATGGGGCAGAG-----GTTACTGTCTCCTTCACCTCGTCCAGCTTCTCCTGTAGCTC------------------------CTCCACTTGCTGCTCCAACTGCAGTGCGCT---------CTTGTTCTCATTGTTCTGGACAGAG-AGAAGGAATCAGCAGCCACCCACTGCAGCTGGAGACCCTAGAACTCGGTGTCTGCCTCCCATGGCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292382 222 - 171882078 GCACCTCCCATCCCCAGAGGCTGGT--GCCCGCCTCCC-AGGCCTTCTTGGATGGGGTGGAG-----GTTACCGTCTCCTTTACCTCACCCAGCTTCCCCTGTAGCTC------------------------CTCTATTTGCTGCTCCAAGTGCAGTGTGCT---------CTTGTTCTCGTTGTTCTGGACAGAG-AGAAGCAATCAGCAGCCACCCACTGAAACTGGAGACCCCAGAACTCGGTGTCTGCCTCCCACGGCAC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466244 221 +   1584492 GCACACCCC-TCCCCAGAGGCTGGT--GCCTGCTTCCC-AGCCCTTCTTGGATGGGGTGGGG-----GTTACTGTCTCCTTCACCTCGTCCAGCGTCTCCTGTAGCTC------------------------CTCCACTTGCTGCTCCGACTGCAGTGCGCT---------CTTGTTCTCGTTGTTCTGGACAGAG-AGAAGGAATCAGCAGCCACCCACTGCAGCTGGAGACCCTAGGACTCGGTGTCTGCCTCCCATGGCAC
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        16219 221 +    138091 GCACACCCC-TCCCCAGAGGCTGGT--GCCCGCCTCCC-AGCCCTTCTTGGATGGGGCAGAG-----GTTACCGTCTCCTTCACCTCGTCCAGCGTCTCCTGTAGCTC------------------------CTCCACTTGCTGCTCCAACTGCAGTGCGCT---------CTTGTTCTTGTTGTTCTGGACAGAG-AGAAGCAATCAGCAGCCACCCACTGAAACTGGAGACCCCAGAACTCGGTGTCTGCCTCCCATGGCAC
i manLeu1.NW_012101289v1    C 0 I 385
s colAng1.NW_012115677v1      3038604 222 +   3749464 GCACCTCCCCTCCCCAGAGGCTGGT--GCCCGCCTCCC-AGCCCTTCTTGGATGGGGTGGGG-----GTTACAATCTACTTCACCTTGCCCAGCTTCTCCTGTAGCTC------------------------CTCCACTTGCTGCTCCAATTGCAGTGCGCT---------CTTGTTCTCATTGTTCTAGACAGAC-AGAAGCAATCAGCAGCCACCCACTGCAGCTGGAGACCCCAGAACTTGGTGTCTGCCTCCCATGGCAC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72427478 210 - 132174527 GCCCCTCCCCTACTTAGAGGCTGCT--GCCTGCCTCCC-AGCCCTTCTTGGATGGGGCAGAG-----GTT-ATGTCACCTTCTGGTTGTGCAGCTTCTCC-----------------------------------TATTTGCTGCACCAACTGCAGTGCGTT---------CTTTTTCTCACTGTTCTGGACAGAG-AGAAGCAACCAGTGGACACCCACTGCAGCTAGAGACCCCAAAACTTGGTGTCTGCCTCCCAAGGCAC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49808015 222 +  54856640 GCCCCTCCCCTACCCAGAAGCTGCT--GCCGGCCTCCC-AGCCCTTCTCGGATGGGACAGAG-----GTTCCCGTCACCTTCTGGTTGTGCAGCTTCTCCTGCAGCTC------------------------CTGTATCTGCTGCACCAACTGCAGTGCGTT---------CTTTCTCTCGTTGTTCTAGACAGAG-AGAAGCAATCAGTGGACACCCACTGCAGCCAGAGACCCCAGCACTTGGTGTCTGCCTCCCAAGGCAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1009953 218 -   1842816 GCATCTCCCCTCCCCAGAGGGCGGT--GCCTGCCTCCC-AGCCCTCCT-GGATGGGGCAGAG-----GTT---ACCGTCTCTTGTTTGTCAAGCTTCTCCTGCAGCTC------------------------CCTTCCTACCTGCTCCAAATGCAGTGCGCT---------CCTGTTCTTGTTCTTCTGGACAGAG-AGAAGCAATCAGCGGCCACCCACTGCAGCTGGAGACCCCAAAACTTGGTGACTGCCTCCCATGGCAC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9388323 254 +  14477005 ACACCTCCTGTCCCCAGAGGCTGGT--GCCCGCCTCCC-AGCCCTTCTTGAATGAGGCAGGG-----TTA-CCGTCTCCTTCAGCTCGCTCAGCTTCTCCTGCAGCTCGCCCAGCTTCTTTCCCAGCTCCTTTTTGACGTGCTGCTCCGACTGCAGTGCACTAGTGATCTCCATGTTCTCATTAGTCTGGATAGGG-AGAAGCAATCGGCGGTCACCCACTGCAGCTGGAGACCCCAGAATTTGGTGTCTGCCTCCCATGGCAC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30950916 216 +  31380117 GCACCGCCCCTCCT------------------------------TTCTCAGATGGAACACTG-----GTTACCGTCTCCTTCATCTCGCCCAGCTCTTCCTGTAGTTGGCCCAGCTTCTTAGCCAGTTCTTTCTTCACATGCTGCTCAGACTGTAGTGCATTGGAAATTTCCATATTGTCATTGCTCTGGACAGAGAAAAAGTAATCAGC-------------AGCTGGAGACTCCAGAACTTGATGCTCACCTCCCAAGGTGC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5825953 245 -  61074082 GCAACCTCCCACCCTCCGAGCAGGTAGGTTTGTCCTCC-AGGCTTCCTCAGCTGGTGTGGGGGGTAAGTTACCATCTCCTTTAGCTCTCCCAGCTTCTCCTGCAGCTGGCCCAGCTTCTTGGCCAGCTCCTTCTTGACATGCTGCTCCGACTGCAGTGCGGTAGTAATCTCCATGTTCTCGTTGGACTGGAGAGAG-AAGAGGAGTCAGTGGCC-----------------ACCCCAGAACATGGAGTCTACCTCCCACAGTGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             403594 255 -    584178 acacacacacaGCCCAGAGGATTGT--GCCTGTCTCCTAAGCCCTTTGCCAGTGGGACAGGG-----GTTACCGTCTCTTTGAGCTCTGCCAGCTTTTCCTGCAGCTGTTCCAGCTTCTTGGCCAGCTCTTTCTTAACATACTGTTCTGACTGCAGGGCACTGGTCATCTCCATATTCTCATTGCTCTGAACAGAG-AGAAGTAATCAGCAACTACCCAATGCAGCCAAAGACCCCAGAACTTGGTGTCCCCCT-CCACAGCTC
i dasNov3.JH564958          I 231 C 0
e chlSab2.chr26               7508849  15 +  58131712 I

a score=257927.000000
s hg38.chr15_KI270851v1_alt     75585 32 +    263054 CGGGAAGGGTAGAGGCAGGTTAGAAAAATCAT
s panTro5.chr15               9308688 32 +  83230942 CGGGAAGGGTGGAGGCAGGTTAGAAAAATCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25812050 32 +  99763055 CGGGAAGGGTGGAGGCAGGTTAGAAAAATCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        15025 32 -    281578 TGGGAAGGCTGGAGGCAGGTTAGAAAAATCAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75987766 32 + 121039945 TGGGAAGGGTGGAGGCAGGTTAGAAAAATCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8228747 32 + 169600520 CGGGAAGGGTGGAGGCAGGTTAGAAAAATCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292604 32 - 171882078 GGGGAAGGGTGGAGGCAGGTTAGAAAAATCAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466465 32 +   1584492 CGGGAAGGGTGGAGGCAGGTTAGAAAAATCAT
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3038826 32 +   3749464 CGGGAAGGGTGGAGGCAGGTTAGAAAAATCAT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72427688 32 - 132174527 CGGGAAGGGTAGAGACAGGTTAGAAAAATCAT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49808237 32 +  54856640 CGGGAAGGGTAGAGACAGGCTAGAAAAATCAT
i saiBol1.JH378108          C 0 M 3184
s cebCap1.NW_016107745v1      1010171 32 -   1842816 CAGGAAGGGTGGAGGCAGCTTAGAAAAATTGT
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9388577 32 +  14477005 CAGGAAGGGTGGAGGCAGGTTAGAAAAATCAT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30951132 26 +  31380117 AGGGATGGGTGGAGGCAGGTTGGAAA------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5826198 25 -  61074082 AGGGAAGAGTGGAGGCAGGT-------GTCCT
i canFam3.chr9              C 0 I 3
s dasNov3.JH564958             403849 32 -    584178 AGTTAAGGGTGAAGACAAGTTGGAAAATACGC
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012101289v1        16440 385 +    138091 I
e chlSab2.chr26               7508849 15 +  58131712 I

a score=225539.000000
s hg38.chr15_KI270851v1_alt     75617 46 +    263054 CCCCTGTCTCCCACAGCCAC--CAGAGCAGGGCTCT--GGCTCACA-GGTG
s panTro5.chr15               9308720 46 +  83230942 CCCCTGTCTCCCACAGCCAC--CAGAGCAGGGCTCT--GGCTCACA-GGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25812082 45 +  99763055 -CCCTGTCTCCCACAGCCAC--CAGAGCAGGGCTCT--GGCTCACA-GGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        15057 32 -    281578 CCCC--TCTCCCACAGCCAC--------------CT--GGCTCACA-GGTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75987798 46 + 121039945 CCCCTCTCTCCCAAAGCCAC--CAGAGCAGGGCTCT--GGCTCACA-GGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8228779 46 + 169600520 CCCCTCTCTCCCACAGCCAC--CAGAGCAGGGCTCT--GGCTCACA-GGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292636 46 - 171882078 CCCCTCTGTCCCACAGCCAC--CAGAGCAGCGCTCT--GGCTCACA-GGTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466497 46 +   1584492 CCCCTCTCTCCCACAGCCAC--CAGAGCAGGGCCCT--GGCTCACA-GTTG
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3038858 46 +   3749464 CCCCTCTCTCCCACAGCCAC--CAGAGTAGGGCTCT--GGCTCACA-GGTG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72427720 46 - 132174527 TCCCTTTCTCCCACAGCCAT--CAGAGCAGGACTCT--GGTTCACA-GGTG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1010203 46 -   1842816 CTCCTTTCTCCCACAGCCGT--CAGAGCAGGGCTGT--GGCTCACA-GGTG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9388609 45 +  14477005 CCCCTCTCCCCGACAGCCAT--CAGAGCAGGGCTC---GGCTCATA-GGTG
i aotNan1.NW_018502759v1    C 0 I 5
s otoGar3.GL873533           30951158 31 +  31380117 ------CTCCCCACAGACACACTGGAGTGGGACTCT--G------------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5826226 47 -  61074082 CACCTCTGCCCCAC--TCAT--CTCAGCAGGGCTCTCCGGCTCACAGGGTG
i canFam3.chr9              I 3 C 0
s dasNov3.JH564958             403881 36 -    584178 -CCCCTCACCCCACTCACAT--CTGAGCATGGATCT--CAC----------
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012101289v1        16440 385 +    138091 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=142578.000000
s hg38.chr15_KI270851v1_alt     75663 34 +    263054 CCTTTAGGAGTAACA-TTTCACTT-GAGGGCTACAC
s panTro5.chr15               9308766 34 +  83230942 CCTTTAGGAGTAACA-TTTCACTT-GAGGGCTACAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25812127 34 +  99763055 CCTTTAGAAGTAACA-TTTCACTT-GAGGGCTACAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        15089 34 -    281578 CCTTTAGAAGTAACC-TTTCACGT-GAGGGCTACAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75987844 34 + 121039945 CCTTTAGAAGTAATA-TTTCATGT-GAGGGCTACAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8228825 34 + 169600520 CCTTTAGAAGTAACA-TTTCACGT-GAGGGCTACAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292682 34 - 171882078 CCTTTAGAAGTAACA-TTTCACAT-GAGGGCTACGT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466543 34 +   1584492 CCTTTAAAAGTAACA-TTTCACGT-GAGGGCTACAC
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3038904 34 +   3749464 CCTTTAGAAGTAACA-TTTCACGT-GAGGGCTACAC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72427766 34 - 132174527 CCTTTAGAAGTACCA-TTTCACAT-GAGGGTTACAT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1010249 25 -   1842816 CCTTTAGAAGCCCCA-TTTCA----------TATac
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533           30951189 25 +  31380117 ---------GTACCA-TTTCACAT-GAGCTCTAGCC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5826273 35 -  61074082 CCTTCAAGGGCACCATTTTCACAT-TGGGTGCATAC
i canFam3.chr9              C 0 I 4
s dasNov3.JH564958             403917 29 -    584178 -----ATGGGCACCA-CTGCACCTGGAGGTCGGCA-
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9388654  5 +  14477005 I
e manLeu1.NW_012101289v1        16440 385 +    138091 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=415049.000000
s hg38.chr15_KI270851v1_alt     75697  69 +    263054 TGCCACATTTTATAGGTGGGGAAACAAAGGCCTGGAGGG-------------------------------------CTAGGGAGGAGGGCAGGCTCCCCAGCTGGG
s panTro5.chr15               9308800  69 +  83230942 TGccccattttataggtggggaaacaaaggcctggaggg-------------------------------------ctaggGAGGAGGGCAGGCTCCCCAGCTGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25812161  69 +  99763055 TGccccattttataggtggggaaacaaaggcctggaggg-------------------------------------CTAGGGAGGAGGGCAGGCTCCCCAGTTGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        15123  69 -    281578 TGCCCCATTTTAGAGGTGGGGAAACAAAGGCCCGGAGGG-------------------------------------CTAGGGAGGAGGGCAGGCTCCCCAGTTGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75987878  69 + 121039945 TGCCCTATTTTACAGTCGGGAAAACAAAGGCCCGGAGGG-------------------------------------ATAGGAAGGAGGGCAGGCTCCCCAGCTGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8228859  69 + 169600520 TGccccattttacaggtggggaaacaaaggcctggaggg-------------------------------------CTAGGGAGGAGGGCAGGCTCCGCAGGTGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292716  69 - 171882078 TGccccatttcacaggtggggaaacaaaggcctggaggg-------------------------------------ctaggGAGGAGGACAGGCTCTGCAGGTGGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466577  69 +   1584492 TGccccattttacaggtggggaaacaaaggcctggaggg-------------------------------------CCAGGGAGGAGGGCAGGCCCCGCAGTTGGG
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3038938  69 +   3749464 TGccccattttacaaattgggaaacaaaggcctggagGA-------------------------------------CTAGGGAGGAGGGCAGGCTCCCCAGGTGGG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72427800  66 - 132174527 TCccccgttttacagatggggaaacaaacgcatggaggg-------------------------------------CTCGGAAGGA---CAAGCTCCCTGGGTGGG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1010274  69 -   1842816 tcccccattttgcaggtgggaaaacaaaggcccagaggg-------------------------------------ctgaggAGGAGGGCAGTCTCCCCAGATGGG
i cebCap1.NW_016107745v1    C 0 I 209
s aotNan1.NW_018502759v1      9388659  69 +  14477005 TGCCCCATTTTACAGGTGGGAAAACAAAGGGCCGGAGGG-------------------------------------CTAGGGAGGAGAGCAGGCTCCCCAGGTAGG
i aotNan1.NW_018502759v1    I 5 C 0
s otoGar3.GL873533           30951214  69 +  31380117 CACCCAGTTTTACAGGTGGGAAATCAAAGTCCCAGAGGG-------------------------------------CCAGTGAGGAGGGCAGGCTAGTTAGGCGAG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5826312  86 -  61074082 TtcccccatttacacgtggggagacaaaggcctagaggggttaactgtcttgcccaGCACCAAAAGAC--------TTGGCTAGGAGGAGAAGG------------
i canFam3.chr9              I 4 C 0
s dasNov3.JH564958             403946 105 -    584178 CAccccactttataggtgggaaaaccaaggcccagagggttcaagtgccttattctacaccaaaggacatggcaagtgaggaatgagggcaggttagccAGGGGC-
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012101289v1        16440 385 +    138091 I
e chlSab2.chr26               7508849  15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=91592.000000
s hg38.chr15_KI270851v1_alt     75766 14 +    263054 GCAACGCACCAGCT
s panTro5.chr15               9308869 14 +  83230942 GCAATGCACCAGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25812230 14 +  99763055 GCAATGCACCAGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        15192 14 -    281578 GCAACGCACCGGCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75987947 14 + 121039945 GCAAGGCACCAGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8228928 14 + 169600520 GCAACGCACCAGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292785 14 - 171882078 GCAATGCACCAGCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466646 14 +   1584492 GCAACGCACCAGCT
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3039007 14 +   3749464 GCAACGCACCAGCT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72427866 14 - 132174527 TCAGCGCACCAGCT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9388728 14 +  14477005 GCCACACACCAGCT
i aotNan1.NW_018502759v1    C 0 I 285
s otoGar3.GL873533           30951283 14 +  31380117 GACACACACCAGCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5826398 14 -  61074082 GCTACACACCAGCT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             404051 14 -    584178 GCTGCGCACCAGCC
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1010343 209 -   1842816 I
e manLeu1.NW_012101289v1        16440 385 +    138091 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=82977.000000
s hg38.chr15_KI270851v1_alt     75780 39 +    263054 CCTTGAAGCTGTTCTGTGGCTCGGCCAGCTGCT--------------------GAAGCC-----------------------
s panTro5.chr15               9308883 39 +  83230942 CCTTGAAGCTGTTCTGTGGCTCAGCCAGCTGCT--------------------GAAGCC-----------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25812244 39 +  99763055 CCTTGAAGCTGTTCTGTGGCTCAGCCAGCTGCT--------------------GAAGCC-----------------------
i panPan2.chr15             C 0 I 20
s gorGor5.CYUI01000141v1        15206 39 -    281578 CCTCAAAGACGCTCTGTGGCTTGGCCAGCTGCT--------------------GAAGCT-----------------------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75987961 39 + 121039945 CCTTGAAGACGCTCTGTGGCTTGGCCAGCTGCT--------------------GAAGCC-----------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8228942 39 + 169600520 CCTCGACGCCGCTCTGTGGCTCGGCCAGCTGCT--------------------GAAGCT-----------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292799 33 - 171882078 CCTCGACGCTGCTCTGTGGCTCGGGCAGCTGCT-------------------------------------------------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466660 33 +   1584492 CCTCGACACCGCTCTGTGGCTCGGCCAGCTGCG-------------------------------------------------
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3039021 39 +   3749464 CCTCGACGCCGCTCTGTGGCTCGGCCAGCTGCT--------------------GAAGTC-----------------------
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72427880  1 - 132174527 -------------------------------C--------------------------------------------------
i calJac3.chr10             C 0 C 0
s otoGar3.GL873533           30951297 59 +  31380117 TGATAAAGCCATCCTGCAACTCCGCCAGCTGGTTCTTGAGCTCAAGGTTCTGGGAAACC-----------------------
i otoGar3.GL873533          C 0 I 19
s canFam3.chr9                5826412 59 -  61074082 TGACGAAGCCGTTCTGCAGCTCAACCAGCTGCTCCTTGAGCTCGCGGTTCTGGGAGAGC-----------------------
i canFam3.chr9              C 0 I 23
s dasNov3.JH564958             404065 82 -    584178 TGATAAAGCCATTCTGCAACTCGACCAGTTGCTCCTTGAGCTCGCGGTTCTGGGAGAGTGCGCGGCTGATGGTGGTGCGGTC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9388742 285 +  14477005 I
e cebCap1.NW_016107745v1      1010343 209 -   1842816 I
e manLeu1.NW_012101289v1        16440 385 +    138091 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=27718.000000
s hg38.chr15_KI270851v1_alt     75819 18 +    263054 TCTCCTCCTG------CTCCCGAA--
s panTro5.chr15               9308922 18 +  83230942 TCTCCTCCTG------CTCCCGAA--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73911710 18 -  99763055 TCTCCTCCTG------CTCCCGTA--
i panPan2.chr15             I 1928 C 0
s gorGor5.CYUI01000141v1        15245 18 -    281578 TCTCATGCTG------CTCCTGAA--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75988000 18 + 121039945 TCTCCTCCTG------CTCCCGAA--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8228981 18 + 169600520 TCTCATCCTG------CTCTCGAA--
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466693  3 +   1584492 ---------------------GAA--
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3039060 18 +   3749464 TCTCCTCCTG------CTCACAAA--
i colAng1.NW_012115677v1    C 0 I 3
s calJac3.chr10              72427881 17 - 132174527 -CTCCTCCTG------CAGCCGCA--
i calJac3.chr10             C 0 C 0
s otoGar3.GL873533           30951375 24 +  31380117 GGTCATTCTGCATGGTCTCCAGAA--
i otoGar3.GL873533          I 19 C 0
s canFam3.chr9                5826494 18 -  61074082 GCTCTGCATG------CTCTCCAG--
i canFam3.chr9              I 23 I 11
s dasNov3.JH564958             404147 20 -    584178 GCTCTGCATG------CTCTCCAGAA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9388742 285 +  14477005 I
e cebCap1.NW_016107745v1      1010343 209 -   1842816 I
e manLeu1.NW_012101289v1        16440 385 +    138091 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M
e macFas5.chr7              170292832  0 - 171882078 C

a score=-7768.000000
s hg38.chr15_KI270851v1_alt     75837 24 +    263054 ---------GCCTCTCCTGCTGCTCCT--------GAAGCC
s panTro5.chr15               9308940  9 +  83230942 ---------GCCTCTCCT-----------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73911728 24 -  99763055 ---------TCTTCTCCTCCTGCTCCT--------GTATCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        15263 24 -    281578 ---------GCCTCTCCTCCTGCTTCC--------GAAGCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75988018 14 + 121039945 ---------GCTTCTCCTCCTGC------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8228999 24 + 169600520 ---------GTCTCTCCTCCTGCTCCC--------GAAGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292832  6 - 171882078 -----------------------------------GAAGCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466696 24 +   1584492 ---------GCTTCTCCTCCTGCTTCC--------GAAGCC
i cerAty1.NW_012002601v1    C 0 C 0
s calJac3.chr10              72427898 24 - 132174527 ---------TCCTCTCTCTCTGCTCCT--------GCAATG
i calJac3.chr10             C 0 C 0
s otoGar3.GL873533           30951399 20 +  31380117 ------------TCTTCTTGCGCTCTT--------CCGCC-
i otoGar3.GL873533          C 0 I 15
s canFam3.chr9                5826523 27 -  61074082 ---------GTTCCTCTGCCTGCTCCCCCCA----GCACT-
i canFam3.chr9              I 11 I 6
s dasNov3.JH564958             404167 41 -    584178 TCTGTTCCCGCTCGGCCGCCTGCTCTCCCCAGCGCTCAGCT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9388742 285 +  14477005 I
e cebCap1.NW_016107745v1      1010343 209 -   1842816 I
e colAng1.NW_012115677v1      3039078  3 +   3749464 I
e manLeu1.NW_012101289v1        16440 385 +    138091 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=34471.000000
s hg38.chr15_KI270851v1_alt     75861 11 +    263054 -TCT-CCTCCTGC
s panPan2.chr15              73911752 11 -  99763055 -TCT-CCTCCTGC
i panPan2.chr15             C 0 I 1767
s gorGor5.CYUI01000141v1        15287 11 -    281578 -TCT-CTTCCTGC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7                8229023 11 + 169600520 -TCT-CCTCCTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292838 11 - 171882078 -TCT-CCTCCTGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466720 11 +   1584492 -TCT-CCTCCTGC
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3039081 11 +   3749464 -TCT-CCTCCTGC
i colAng1.NW_012115677v1    I 3 C 0
s calJac3.chr10              72427922 11 - 132174527 -ACT-CCTCCTGC
i calJac3.chr10             C 0 C 0
s otoGar3.GL873533           30951434 12 +  31380117 -TCTGCTTCCTGC
i otoGar3.GL873533          I 15 I 6
s canFam3.chr9                5826556 11 -  61074082 -CCC-GCTCCAGC
i canFam3.chr9              I 6 C 0
s dasNov3.JH564958             404208 12 -    584178 GCTC-TCTCGAGC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9388742 285 +  14477005 I
e cebCap1.NW_016107745v1      1010343 209 -   1842816 I
e nomLeu3.chr6               75988032  0 + 121039945 C
e panTro5.chr15               9308949  0 +  83230942 C
e manLeu1.NW_012101289v1        16440 385 +    138091 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=21830.000000
s hg38.chr15_KI270851v1_alt     75872 9 +    263054 TCCCGAAGT
s gorGor5.CYUI01000141v1        15298 9 -    281578 TCCCGAATC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75988032 9 + 121039945 TCCCAAAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8229034 9 + 169600520 TCCTGAAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292849 9 - 171882078 TCCTGAAGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466731 9 +   1584492 CTCCCAAGC
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3039092 9 +   3749464 TCCCAAGGC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72427933 9 - 132174527 TGCCACAGC
i calJac3.chr10             C 0 C 0
s otoGar3.GL873533           30951452 9 +  31380117 TCCCGTAGC
i otoGar3.GL873533          I 6 C 0
s canFam3.chr9                5826567 9 -  61074082 TCCAGCAGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             404220 9 -    584178 TCCAGCAGC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9388742 285 +  14477005 I
e cebCap1.NW_016107745v1      1010343 209 -   1842816 I
e panPan2.chr15              73911763 1767 -  99763055 I
e panTro5.chr15               9308949 0 +  83230942 C
e manLeu1.NW_012101289v1        16440 385 +    138091 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=391530.000000
s hg38.chr15_KI270851v1_alt     75881 103 +    263054 CTCTCCTTTTGCCCCTCATTCAGGAGACTTATGCGCTGATTGTACTCCACCTGGGCCTGGAGCGCTCCTGCCACTCTCTCTAGTTCCTTCCTCA-GG------------------TGC------------TGCA------
s panTro5.chr15               9308949  96 +  83230942 -------TTTGCCCCTCATTCAGGAGACTTATGCGCTGATTGTACTCCACCTGGGCCTGGAGCGCTCCTGCCACTCTCTCTAGTTCCTTCCTCA-GG------------------TGC------------TGCA------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25812303 104 +  99763055 CTCTCCTTTTGCCCCTCATTCAGGAGACTTATGCGCTGATTGTACTCCACCTGGGCCTGGAGCGCTGCTGCCACTCTCTCTAGTTCCTTCCTCAGGG------------------TGC------------TGCA------
i panPan2.chr15             I 20 C 0
s gorGor5.CYUI01000141v1        15307 103 -    281578 CTCTCTTCTTGTCGCCGGTTCAGGAGACTTATGTGCTGATTGTTTTTGACCTGGGCCTGGAGCTCTCCTGCCACTCTCTCTAGTTCCTTCCTCA-GG------------------TGC------------TGCA------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75988041 103 + 121039945 ATCTCCTTTTGCCCCCGGTTCAGGAGACTTATGCGCTGATTGTTTTTCACCTGGGCCTGGAGCTCTCCTGCCACTCTCTCCAGCTCCTTCCTCA-GG------------------TGC------------TGCA------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8229043 103 + 169600520 CTCTCCTTTTGTGGCTGGTTCAGGAGACTTACGTGTTGATGGTTTTCCACGTGGGCCTGGAGCTCTGCTGACACCCTCTCTAGTTCCTTCCTCA-GG------------------TGC------------TGCA------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292858 103 - 171882078 CTCTCCTTTAGTGTCTGGTTCAGGAGACTTACGTGTTGATGGTTTTCCACGTGGGCCTGGAGCTCTGCTGACACCCTCTCTAGTTCCTTCCTCA-GG------------------TGC------------TGCA------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466740 103 +   1584492 CTCTCCTTTTGTGGCTGGTTCAGGAGACTTACGTGTTGATGGTTTTCCACGTGGGCCTGGAGCTCTGCTGACACCCTCTCTAGTTCCTTCCTCA-GG------------------TGC------------TGCA------
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3039101 103 +   3749464 CTCTCCTTTTGTGCCTGGTTCAGGAGACTTACGTGCTGATAGTTTTCCACCTGGGCCTGGAGCTCTGCTGACACTCTGTCTACTTCCTTCCTCA-GG------------------TGC------------TGCA------
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72427942 121 - 132174527 CGTTTTTTCTGCTCAGAGCTCAGGCAATTCAAGTTCTCATTGTTTTTCACCTGAGCTTGCAGCTGCTCTGTCAAACTCTCCAGATTTTTCCTCA-GGAGGTTGGTCTCAAATTTTAGC------------TGTT------
i calJac3.chr10             C 0 C 0
s otoGar3.GL873533           30951461 103 +  31380117 CGCTGCCCCTGCTCCAGGTTCAGGCGAATCAAACCCTCATTGTCTTGCACCTGGTCACGCAGCTGTCCTGCCAGGCTTTCCAGCTGCTTTTGCA-GC------------------TGC------------TCCG------
i otoGar3.GL873533          C 0 I 18
s canFam3.chr9                5826576 115 -  61074082 CGCTGCTCCTGCTCCCGGTTCAGGCGACTCAAACCTTCGTTGTCTTTCACTTGGGCCTGCACCTGCTCGGCCAGGCTCTCCAGCTCCTTCTGTA-GT------------------TGTTCAGTCTCGGCGTGCA------
i canFam3.chr9              C 0 I 9
s dasNov3.JH564958             404229 121 -    584178 CGCTGCTCCTGCTCCTGATTCAGGCGACTCAGGCCCTCGTTGTCATGTACCTGAGCCTGCAGTCGCTCTGCTAGGTTCTCTAGCTCCTTCTGCA-GC------------------TTTTCAGCCTCTGCTTGCAGCTGCT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9388742 285 +  14477005 I
e cebCap1.NW_016107745v1      1010343 209 -   1842816 I
e manLeu1.NW_012101289v1        16440 385 +    138091 I
e chlSab2.chr26               7508849  15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=234018.000000
s hg38.chr15_KI270851v1_alt     75984 40 +    263054 GCTCCACCTCAGAGGGCACTGCTGGGGGCTCCGGGGGCAA
s panTro5.chr15               9309045 40 +  83230942 GCTCCACCTCAGAGGGCACTGCTGGGGGCTCCGGGGGCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25812407 40 +  99763055 GCTCCACCTCAGAGGGCACTGCTGGGGGCTCCGGGGGCAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        15410 40 -    281578 GCTCCACCTCAGAGGGCACTGCTGGGGGCTCCGGGGGCAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75988144 40 + 121039945 GCTCCACCTCAGAGGTCACTGCTGGGGGCTCCGGGGGCAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8229146 40 + 169600520 GCTCCTCCTCAGCGGGCACTGCTGGGGGCTCCGGGGGCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170292961 40 - 171882078 GCTCCTCCTCAGGGGGCACTGCTGGGGGCTCCGGGGGCAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466843 40 +   1584492 GCTCCTCCTCAGCGGGCACTGCTGGGGGCTCCGGGGGCAG
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3039204 40 +   3749464 GCTCCTCCTCAGGGGGCACTGCTGGGGGCTCCGGGGGCAG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72428063 32 - 132174527 GTTCTACCACCGAGGGCCCTACTG--------GGACGTGG
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9389027 40 +  14477005 GCTCCACCTCCGAGGGCCCTGCTGGGGGCTCTGGGGGTGG
i aotNan1.NW_018502759v1    I 285 C 0
s otoGar3.GL873533           30951582 40 +  31380117 GTTCCACCTCCGAGGGCCCTGCAGGGGGCGCTGGGGATGG
i otoGar3.GL873533          I 18 C 0
s canFam3.chr9                5826700 40 -  61074082 GCTCCTCCTCCAAGGGCCTGGCTGGGGGCTCCTGGGCTGG
i canFam3.chr9              I 9 C 0
s dasNov3.JH564958             404350 40 -    584178 GTTCCACCTCAGAGTACCCAGCCGGGGGCTCCTGGGGTGG
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1010343 209 -   1842816 I
e manLeu1.NW_012101289v1        16440 385 +    138091 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=302265.000000
s hg38.chr15_KI270851v1_alt     76024 47 +    263054 GGGTTCAGCT-----------GAGAAAGGAAGCAGATAATAAGGGCCTCTGGATTCT--------C-------
s panTro5.chr15               9309085 47 +  83230942 AGGTTCAGCT-----------GAGAAAGGAAGCAGATAATAAGAGCCTCTGGATTCC--------a-------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25812447 47 +  99763055 GGGTTCAGCT-----------GACAAAGGAAGCAGATAATAAGGGCCTCTGGATGCT--------A-------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        15450 47 -    281578 GGGTTCAGCT-----------GAGAAAGGAAGCAGATAATAAGGGCCTCTGGATTCT--------C-------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75988184 47 + 121039945 GGGTTCAGCT-----------GAGAAAGGAAGCAGACAGTAAGAGCCTCTGGATTCc--------a-------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8229186 47 + 169600520 GGGTTTAGCT-----------GAGAAAGGAAGCAGACAATAAGGGCCTCTGGATTCT--------c-------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170293001 47 - 171882078 GGGTTTAGCT-----------GAGAAAGGAAGCAGACAATAAGGGCCTCTGGATTCT--------C-------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1466883 47 +   1584492 GGGTTTAGCT-----------GAGAAAGGAAGCAGACAATAAGGGCCTCTGGATTCT--------c-------
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3039244 47 +   3749464 GGGTTCAGCT-----------GAGAAAGGAAGCAGACAATAAGGGCCTCTGGATTCT--------c-------
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72428095 47 - 132174527 GGCTTCAGCT-----------GAAAAAGGAAGCAGAATATAAGGGCCTCTGGATTCT--------A-------
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1010552 55 -   1842816 GGGTTCAGCT-----------GAGAAAGGAAGCAGAGAGTAAGGGCCTCTGGATTCTCAAAATAAA-------
i cebCap1.NW_016107745v1    I 209 C 0
s aotNan1.NW_018502759v1      9389067 46 +  14477005 GGGCTCAGCT-----------GAGAAAGGAGGCAGACAATAAGGGCCTCTGGATTCT----------------
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30951622 47 +  31380117 GGCTTCAGCT-----------GAGGAAGAAGAGCATGGTTAAGGGCCTCTGGATTCT--------C-------
i otoGar3.GL873533          C 0 I 538
s canFam3.chr9                5826740 58 -  61074082 GGGCACCACTGTGGGGAGCAGGGGGAGGGGGACACACGCTAGGGGCCTCTCACCTCT--------G-------
i canFam3.chr9              C 0 I 6
s dasNov3.JH564958             404390 54 -    584178 GGGTACAGCT-----------GAGAAAGGAAGCACATAATAAAGGCTTCTCACTTCT--------GTGTTCTC
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012101289v1        16440 385 +    138091 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=-66704.000000
s hg38.chr15_KI270851v1_alt     76071  7 +    263054 G-----------------------------------GAAAAG
s panTro5.chr15               9309132 20 +  83230942 aaaaaaaaaaa----------------------aaagaaaga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25812494 34 +  99763055 Caaaaaaaaaa--------aaatgaaaagaaagaaagaaaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        15497  8 -    281578 G----------------------------------AAAAAAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75988231 42 + 121039945 aaaaaaaaaaacaaaaaacaaaaaacaaaaacaaaaacacag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8229233  7 + 169600520 aaaaaca-----------------------------------
i rheMac8.chr7              C 0 I 30
s macFas5.chr7              170293048  7 - 171882078 TAAAACC-----------------------------------
i macFas5.chr7              C 0 I 12
s cerAty1.NW_012002601v1      1466930  7 +   1584492 aaaaaca-----------------------------------
i cerAty1.NW_012002601v1    C 0 I 30
s colAng1.NW_012115677v1      3039291  7 +   3749464 aaaaaca-----------------------------------
i colAng1.NW_012115677v1    C 0 I 33
s calJac3.chr10              72428142  5 - 132174527 AAAAA-------------------------------------
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1010607  5 -   1842816 AACAA-------------------------------------
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9389113  5 +  14477005 CAAAA-------------------------------------
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9                5826804  3 -  61074082 CAA---------------------------------------
i canFam3.chr9              I 6 C 0
s dasNov3.JH564958             404444  1 -    584178 ----------------------T-------------------
i dasNov3.JH564958          C 0 C 0
e otoGar3.GL873533           30951669 538 +  31380117 I
e manLeu1.NW_012101289v1        16440 385 +    138091 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=658382.000000
s hg38.chr15_KI270851v1_alt     76078 89 +    263054 AAAAA-CC--CTCCTCTTGGCGCACAGCTCCT--CTCAGG-------CTCCTC------AAA-CTTGGCCTCACTGCTAATGATTCCTCCCACCCAGATGGTAGCCAG
s panTro5.chr15               9309152 89 +  83230942 aaaaa-CC--CTCCTCTTGGTCCACAGCTCCT--CTCAGG-------CTCCCC------AAA-CTTGGCCTCGCTGCTAATGATTCCTCGCACCCGGATGGTAGCCAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25812528 89 +  99763055 aaaaa-CC--CTCCTCTTGGCGCACAGCTCCT--CTCAGG-------CTCCTC------AAA-CTTGGCCTCACTGCTAATGATTCCTCGTACCCAGATGGTAGCCAG
i panPan2.chr15             C 0 I 1740
s gorGor5.CYUI01000141v1        15505 89 -    281578 AAAAA-CC--CTCCTCTTGGCGCACAGCTCCT--CTCAGG-------CTCCTC------AAA-CTTGGCCTCACTGCTAATGATTCCTCGCACCCAGATGGTAGCCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75988273 89 + 121039945 aaaaa-aC--CTCCTCTTGGTGCACAGCTCCT--CTCAGG-------CTCCCC------AAA-CTTGGCCTCGCTGCTAATGATTCCTCGCACCCGGATTGTAGCTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8229270 87 + 169600520 aaaaaaCC--CTCCTCTTGGTGCACAGCTCCT--CTCAGG-------CTCCCC------AAA-CTTGGCCTCACTGC---TGATTCCTCGCACCCGGATGGCAGCCAA
i rheMac8.chr7              I 30 C 0
s macFas5.chr7              170293067 90 - 171882078 AAAACACC--CTCCTCTTGGTGCACAGCTCCT--CTCAGG-------CTCCCC------AAA-CTTGGCCTCACTGCTAATGATTCCTCGCACCCGGATGGTAGCCAA
i macFas5.chr7              I 12 C 0
s cerAty1.NW_012002601v1      1466967 89 +   1584492 aaaaC-CC--CTGCTCTTGGTGCACAGCTCCT--CTCAGG-------CTCCCC------AAA-CTTGGCCTCACTGCTAATGATTCCTCGCACCCGGATAGTAGCCAA
i cerAty1.NW_012002601v1    I 30 C 0
s manLeu1.NW_012101289v1        16825 89 +    138091 aaaAC-CC--CTCCTCTTGGTGCACAGCTCCT--CTCAGG-------CTCCCC------AAA-CTTGGCCTCACTGCTAATGATTCCTCGCACCCGGATAGTAGCCAA
i manLeu1.NW_012101289v1    I 385 C 0
s colAng1.NW_012115677v1      3039331 89 +   3749464 aaaac-CC--CTCCTCTTGGTGCACAGCTCCT--CTCAGG-------CTCCCC------AAA-CTTGGCCTCACTGCTAATGATTCCTCGCACCCGGATGGTAGCCAA
i colAng1.NW_012115677v1    I 33 C 0
s calJac3.chr10              72428147 88 - 132174527 AAAAA-CC--CTCCTTTTGGTGCACAGCTCCT--TTCACG-------CTCCCT------AAA-CTTGGCCTCACTGCTGACGATCCTTTGCACCC-GGTGGTAGCCAG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1010612 91 -   1842816 AAAAA-CCCACTCTTCTGGGTGCACAGCTCCT--CTCAGG-------CTCCTC------AAA-CCTGGCCTCACTGCTAATGATTCCTCTCACCCAAATGGTAGCCAG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9389118 89 +  14477005 CAAAG-TC--CTCCGCTTGGTCCACAGCTCCT--CTTAGG-------CTCCCC------ACA-CTTGGCCTCCCTGCTAATGATTCCTTGCACCCGGATGGTAGCCAG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30952207 84 +  31380117 AAAAA-CC--CTCTTTATGGTCTAAAGCTCTT--CAC------------CCCA------AAT-CTTGGCTTCTTGGATAAGTATTCCTCACATTCCTATGATGGTCAC
i otoGar3.GL873533          I 538 C 0
s canFam3.chr9                5826807 97 -  61074082 AAAAG-CC--CTCTTCTTGATCCACAGCTCCT--AACTGGGCCTCCTCGCCCC------AAACCTTGGCTTCCTGGCTCACAATCCCTCACCCTCAGGGGATATGCAC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             404445 97 -    584178 AAAAA-CT--CTCTTCTTGGTCCACAGCTCCTAATTCATG-------CTCCTCACCCCAAGT-CCTGCTTTCCTTGCTAATAATTCCTCACACCCATATGATGTTCAA
i dasNov3.JH564958          C 0 C 0
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=2128915.000000
s hg38.chr15_KI270851v1_alt     76167 315 +    263054 TCTTCCAAAC---------------------------------------------------------CACTTTCAGA---------GAAAG-----------------------AGCACTGCG-----GGTGGCTGACAACGGG---------ccctctttgctgatgggg--------acactgaggctcattgagatgacaagact-------------------------tgccgtctcctggc-aCAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCCCATCCACCCACCTCGCTGGGGCACTCCAAGCCACCCTCA-CAGCCCTCTGATGCCAGTCCTGCTGTCAGGTCATGCCAGCCCCATCTTACCCATCTGGTGTTTGAGTTTGGACAAGCTCCTCTCCAGCGTCTCTACCCGATTTTTATCATGCTTCTTCTCCTTCTTCAACG
s panTro5.chr15               9309241 314 +  83230942 TCTTCCAAAC---------------------------------------------------------CACTTTCAGA---------TAGAG-----------------------AGCACTGTG-----GGTGGCTGGCAACGGG---------ccctctttgctgatgggg--------acactgaggttcattgagatgacaagact-------------------------tgccgtctcctggc-aCAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCC-ATCCACCCACCTCGCTGGGGCACTCCAAGCCACCCTCA-CAGCCCTCTGATGCCAGTCCTGCTGCCAGGCCATGCCAGCCCCATCTTACCCGTCTGGTTTTTGAGTTTGGACAAGCTCCTCTCCAGCTTCTCTACCCGATATTTATCATGCTTCTTCTCCTTCTTCAACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25814357 314 +  99763055 TCTTCCAAAC---------------------------------------------------------CACTTTCAGA---------TAGAG-----------------------AGCACTGTG-----GGTGGCTGGCAACGGG---------ccctctttgctgatgggg--------acactgaggctcattgagatgacaagact-------------------------tgccgtctcctggc-aCAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCC-ATCCACCCACCTCGCTGGGGCACTCCAAGCCACCCTCA-CAGCCCTCTGATGCCAGTCCTGCTGCCAGGCCATGCCAGCCCCATCTTACCCATCTGGTTTTTGAGTTTGGACAAGCTCCTCTCCAGCTTCTCTACCCGATATTTATCATGCTGCTTCTCCTTCTTCAACA
i panPan2.chr15             I 1740 C 0
s gorGor5.CYUI01000141v1        15594 322 -    281578 TCTTCCAAAG---------------------------------------------------------CACTTTCAGA---------GAAAG-----------------------AGCACTGCG-----GGTGGCTGACAACGGG---------CCCTCTTTGCTGATGGGGACACTGACACACTGAGACTCATTGAGATGACAAGACT-------------------------CGCCGTCTCCTGGC-ACAGATCTCTTTCCCTCTGCCTCAAAGCCCTTCC-ATCCACCCACCTCCCTGGGGCATTCTAAGCCACCCTCA-CAGCCCTCTGATGCCAGTCCTGCTCCCAGGTCATGCCAGCCCCATCTTACCCATCTGGTTTTTAAGTTCGGACAAGCTCCTCTCCAGCTCCTCTACCCGATGAGTATAATGCTCCTTCTCTGTCTTCAGTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75988362 311 + 121039945 TCTTCCAAAC---------------------------------------------------------CACTTTCAGA---------TAGAG-----------------------AGCAATGTG-----GGTGGCTGACAACGGG---------CCCTCTTTGCTGATGGGG--------ACACTGAGGCTAATGGAGACGACAAGACT-------------------------TGCTGTCTCCTGGC-ACAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCC-ATCCACCCACCTCCCTGGGGCATTCTAAGCCACCCCCA-CAACCCTCTGATGCCAGTCCTGCTGCCAGGTCATGCCAGCCCCATCTTACCCCTCTGGTTTTTGAGTTTGGACAAGCTCCTTTCCAGCTTCTCTACCCGACAAGCATCATGCTTCTTCT---TCTTCAATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8229357 313 + 169600520 TCTTCCAAAC---------------------------------------------------------CACTTCCAGA---------TGGAG-----------------------AGCACTGTG-----GGTGGCTGACAACGGG---------CCCCCTTTGCTGATGGGG--------ACACTCAGGCTCATGGAGATGACAAGATT-------------------------TGCTGTCTCCCGGC-ACAGACCTCTTTCCCTCTGCCTCAAAGCCTTTCC-ATCCACCCACCTCCCTGGAGCATTCTAAGCC-CCTCCA-CAGCCCTCTGATGCCAGGCCTGCTCCCAGGTCACACCAGCCCCATCTTACCCATCTGGTTTTTGAGTTTGGACAAGCTCCTCTTCAGCTCCTCCACCCGACGTGTATCATCCTTCTTCTCTTTCTTCAAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170293157 311 - 171882078 TCTTCC-AAC---------------------------------------------------------CGCTTTCAGA---------TGGAG-----------------------AGCACTGTG-----GGTGGCTGACAATGGG---------ccctctgtgctgatgggg--------acactgaggctcacacagatgacaagact-------------------------tgccgtctcctggc-aCAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCC-ATCCACCCACCTCCCTGGGGCATTCTAAGCC-CC-CCA-CAGCCCTCTGATGCCAGGCCTGCTCCCAGGTCACACCAGCCCCATCTTACCCATCCGGTTCTTGAGTTTGGACAAGCTCCTCTCCAGCTTCTCCACCCGACGCATGTCGTCCTTCTTCTCCTTCTTCAAGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1467056 313 +   1584492 TCTTCCAAAC---------------------------------------------------------CACTTTCAGA---------TGGAG-----------------------AGCACTGTG-----GGTGACTGACAACGGG---------ccccctttgctgatgggg--------acactgaggctcatggagataacaagact-------------------------tgctgtctcccggc-aCAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCC-ATCCACTCACCTCCCTGGGGCATTCTAAGCC-CCTCCA-CAGCCCTCTGATGCCAGGCCTGCTCCCACGTCACACCAGCCCCATCTCACCCATCTGGTGTTTGAGTTTGGACAAGCTCCTCTTCAGCTCCTCCACCCGATGTGTGTCATCCTTCTTCTCCTTCTTCAAGG
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        16914 313 +    138091 TCTTCCAAAC---------------------------------------------------------CACTTTCAGA---------TGGAG-----------------------AGCACTGTG-----GGTGACTGACAACGGG---------CCCCCTTTGCTGATGGGG--------ACACTGACGCTCACGGAGATGACAAGATT-------------------------TGCCGTCTCCTGGC-ACAGACCTCTTTCCTTCTGCCTCAAAGCCCTTCC-ATCCACCCACCTCCCTGGGGCATTCTAAGCC-CCTCCA-CAGCCCTCTGATGCCAGGCCTGCTCCCAGGTCACACCAGCCCCATCTCACCCATCTGGTGTTTGAGTTTGGACAAGCTCCTCTTCAGCTCCTCCACCCGATGTGTGTCATCCTTCTTCTCCTTCTTCAAGG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3039420 313 +   3749464 TCTTCCAAAC---------------------------------------------------------CACTTTCAGA---------TGGAG-----------------------AGCACTGTG-----GGTGACTGACAATGGG---------ccccatttgctgatgggg--------acactgaggctcacggagatgacaagact-------------------------tgctgtctcccggc-aCAGACCTCTTTCCCTCTGCCTCAAAGCCCTTTC-ATCCACCCACCTCCCTGGGGCATTCTAAGCC-CCCCCA-CAGCCCTCTGATGCCAGGCCTGCTCCCAGGTCATGCCAGCCCCATCTTACCCATCTGGTTTTTGAGCTTGGACAAGCTCCTCTCCAGCTTCTCTACCCGATGCATAACATCCTTCTTCTCTTTCTTCAAGG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72428235 321 - 132174527 ACTTCCAAGC---------------------------------------------------------CACTTTCAGA---------TAGAG-----------------------AGCACTGTG-----GGCGGCTGACAACGGGCCCTCC--Tccctctttgctgataggg--------acactgaggctcatggagattataagact-------------------------tgtcATCTCCCGGC-ACAGACCTCTTTTCCTCTGTCTCAAAGCCCTTCC-ATTCACCTACCTCCCTAGGATATTCTAAACTATCCCCA-CAGCCCTCTGGTGCCAGTCCTGTTCCCAGGTCACGCCAGTCACATCTTACCCAGCTGGTTCCTGAGGTGGGCAAGGCTCCTTTCCAGCTCCTGCATGCGATGTGCATCCTGCATCTTCTCAAGCTTCAATG
i calJac3.chr10             C 0 I 604
s cebCap1.NW_016107745v1      1010703 319 -   1842816 TCTTCCAAGC---------------------------------------------------------CACTTTCAGA---------TAGAG-----------------------AGCACTGTG-----GGTGGCTGACAAAAGGCAC-Cc--tccctcttt-ctgatgggg--------acactgaggctcatggagattacgagact-------------------------tgctgtctcctagc-aCAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCC-AGCCACCCACCTCCCTGGGGCACTCTAAGCCACCCCCA-CAGCCATCTGATGCCAGTCCTGCTCCCTGGTCATGCCAGCCCCATCTTACCCAGATGGTTTTGTAGGTGGGCAAGGCTCCCCTTCAGCTCCTCGATTTTAATTGCATCCTGCCTTTTCTCCATTTTGAATA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9389207 307 +  14477005 TCTTCCAAGT---------------------------------------------------------CACTACTCAA---------TAAAG-----------------------ACAACTGTG-----GGTGGCTGACAACCGGCACTCc--tccctctttgctgatgggg--------acactgaggctcatagagatgacaagact-------------------------tgccATCTTCTGGC-ACAAACCTCTTTCCCTCTGCCTCAATGCC---------------AAATCCTGGGGCATTCTAAGCCACCCCCG-CAGCCCTCTGACAAAAGTCCTGCTCCCAGGTCACCCCAGCCCCAGCTTACCCATCTGGTTCCTCAGTTCAGCCAAGCTTGTCTCCAGCTCCTGTACCCGACTCATGTTATGCTCCTTCTCCTCCCTCAATG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30952291 328 +  31380117 TCTTTCAAGC---------------------------------------------------------CACTTTCAAA---------TAGTGTTTTTAC----------------ATTATTGTGCTAAAGACAATTGTGGATGGGCATT-----CTCCCTCTGTAAATGTGG--------ACACAGAGTCTCAAGGGAGACACGAGACT-------------------------TGCCACCTCCTAGC-ACAGACCTCTTTCCCTTTGCCCCAAAGCTCTGCT-ATTTTTCTACCTCCTGAGGGCATTCCTAGCC-ACCTCA-CAGTGCTCCGACA-CAATCCTCCTCCCAGGTCCCCTGAACCCCAGCTTACCTGTCTGGTTCCTCAGTTCAGCCAAGCTGGTCTCTAGCTCCCGCACCTGAGTCACACTCTGCTCCTTCTCCTCCTTCAATA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5826904 305 -  61074082 TCTTTCAAGA---------------------------------------------------------CACTTTTGAA---------AAGAGTTTTTAATATTTTTATGCTCAGGACAATTCGG-----AGTGGTTGCCAGCGGG---------C-------------------------ACACTG---------------CCCAACCT-------------------------GGCCAACTCCTAGT-ACGGACCTCTTTCCCTGGGCCACAGTCCCCTTCC-ATCCACCCACATCCTTAGGGCATTTGAAGGCATCCTCACCAGCCCTCTGGCACCAATCCTGCTCCCAGATCCT-CCTGCCTCAGCTTACCTATCTGGTTCTTCAGTTCAGCCAAGTTGGCCTCCAACTCCTGCACCTGACTCATGCTGTGCTCCTTCTCTTCCCTCAATC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             404542 405 -    584178 TATTCCAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGTTCTTTTATAGttctatactcaag-----------------------acaattctg-----gatggttgacagtgggtactccatcccctttttgcagatggag--------acaatgaaactcagagaaattataagacttgccaaaggtcacatagtaagtcagtgccaactcctggtaacagaactcTTTCCCCTTG-------GCCAT----AATCACC-ACCTCTCACAGACATTCTAAGCCATCCTCACCAGCCCTCTGACACCACTTCTGCTCTCAGATTACTCCAGACCCAGCATACCTGTCTCATTCTTCAGTTTAGCCAAACTGGTCTCCAGTTCCTGCACCTGACACATGCTATGCTCCTTCTCCTCCCTCAGTG
i dasNov3.JH564958          C 0 C 0
e chlSab2.chr26               7508849  15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=2776024.000000
s hg38.chr15_KI270851v1_alt     76482 402 +    263054 AGCAAACCTGCCCAAAGCACAGGGGGAA-----------------AGGGCCCTGGAGAGAGG--------GGCTGGAGGCTGGA---------CATGCTACCATCTCCC-----------TCTCTGCCCCCACCTCCACAAAGCCCAGTCCCAGGACCACCTCTGGCTCTAC---------------T-----------------ATTCCCATTTTACAGGTGC-----------CCAGAAAGATCCAGTGACCTATC-TAATGT---GGGGGGGCTGAAGGGTCAGATCTCACCTCCTGCGACATTTTTCTCATCCTCTGCTGCCACCGGGCCCTCTCTCCTTTTAGATGT-TCAGCATATTCATCCCTCTCTAGCTGGACTTCTTTAAGTGACTCCTTCAACTGCAAGAATGGGCACAGAAATTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGTTACCTGGGGTCATCTTCCTTCCACATCCCTCCC
s panTro5.chr15               9309555 402 +  83230942 AGCAAACCTGCCCAAAGCACAGGGGGAA-----------------AGGGCCCTGGAGAGAGG--------GGCTGGAGGCTGGA---------CATGCTACCATCTCCC-----------TCTCTGCCCCCACCTCCACAAAGCCCAGTCCCAGGACCACCTCTGGCTAtac---------------t-----------------atccccattttacaggtgc-----------ccagaaagatccagtgacctatc-aaatgt---GGGGGGGCTGAAGGGTCAGATCTCACCTCCTGTGACATTTTTCTCATCCTCTGCTGCCACCGGGCCCTCTCTCCTTTTAGATGT-TGAGCATATTCATCCCTCTCTATCTGGGCTTCTTTAAGTGACTCCTTCAACTGCAAGAATGGGCACAGAAATTAGGAAGGGCTGTCACTGGTCCTCACCTACTCCTGGTTACCTGGGGTCATCTTCCTTCCACATCCCTCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25814671 402 +  99763055 AGCAAACCTGCCCAAAGCACAGGGGGAA-----------------AGGGCCCTGGAGAGAGG--------GGCTGGAGGCTGGA---------CATGCTACCATCTCCC-----------TCTCTGCCCCCACCTCCACAAAGCCCAGTCCCAGGACCACCTCTGGCTATAC---------------T-----------------ATCCCCATTTTACAGGTGC-----------CCAGAAAGATCCAGTGACCTATC-AAATGT---GGGGGGGCTGAAGGGTCAGATCTCACCTCCTGTGACATTTTTCTCATCCTCTGCTGCCACCGGGCCCTCTCTCCTTTTAGATGT-TGAGCATATTCATCCCTCTCTATCTGGGCTTCTTTAAGTGACTCCTTCAACTGCAAGAATGGGCACAGAAATTAGGAAGGGCTGTCACTGGTCCTCACCTACTCCTGGTTACCTGGGGTCATCTTCCTTCCACATCCCTCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        15916 401 -    281578 TGTAAACCTGCCCAAAGCACA-GGGGAA-----------------AGGGCCCTGGAGAGAGG--------GGCTGGTGGCTGGA---------CAGGCTGCCCTCTCCC-----------TCTCTGCCCCCACCTCCACAAAGCCCAGACCCATGACCACCTCTGGCTCTAC---------------T-----------------ATTCCCATTTTACAGATG------------CCAGAAAGATCCAGTGACCTATC-TAATGT---GGGGGGGCTGAAGGGTCAGATCTCACCTCCTGCGACATTTTTCTCATCCTCTGCTGCCACAGGGCCCTCTCTCCTTTTATACGTATCAGCATACTCATCTTTTTCTAATTGGACTTGTTCAAATGACTTCTTCAACTGCAAGAATGGGCACAGAAGTTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGTCATCGTCCTTCCACATCCCTCCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75988673 402 + 121039945 TGCAAACCTGCCCAAAGCACAGGGGGAA-----------------AGGGCCGTGGAGAGAGG--------GGCTGGTGGCTAGA---------CAGGCTGCCATCTCCC-----------TCTCTGCCCCCACCTCCACAAAGCCCAGACCCATGACCACCTCTGGCTGtac---------------t-----------------attcccattttacagatgc-----------ccagaaagatccagtgacctatc-taaggt---GGGGGGGCTGAAGGGTCAGATCTCACCTCCTGCGACATTTTTCTCATCCTCTGCTGCCACCGGGCCCTCTCTCCTTTTATATGC-TGAGCAAATTCATCTTTCTCTAGCTGGACTTGTATCGGCAACTCCTTCAACTGCAAGAATGGGCACAGAAGTTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGTCATCTTCCTTCCACATCCCTCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8229670 392 + 169600520 TGCAAACCTGCCCAAAGCACAGGGGAAA-----------------AGCGCCCTGGAGAGAGG---------------GGCTGG-----------TGGCTGCCATCTCCC-----------TCTCTGCCCCCACCTCCACAAAGCCCAGACCCATGACCACATCTGGCTGTA----------------T-----------------ATTCCCATGTTACAGATGC-----------CCAGAAAGATCCAGTGACCTATC-TAAGAT---GGGGGTGCTGAACGGTCAGACCTCACCTCCTGCCACATTTTTCTCATCCTCTGCTGCCACTGGGCCCTCTCTCCTTTTAGATGT-TGAGCATATTCATCTCTCTCTAGATGGGCTTGTTTAAGTGAATCCTTCATCTGCAAGAATGGGCACAGAAGTTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGTCATCTTCCTTCCACATCTCTCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170293468 390 - 171882078 TGTAAACCTGCCCAAAGCACAGGGGAAA-----------------AGGGCCCTGGAGAGAGG---------------GGCTGG-----------TGGCTGCCATCTCCC-----------TCTCTGCCCCCACCTCCACAAAGCCCAGACCCATGACCACCTCTGGCTGTA----------------T-----------------ATTCCCATTTTACAGATGC-----------CCAGAAAGATTCCGTGACCTATC-TAAGGT---CAGGGGGCTGAAGGATCAGATCTCACCTCCTGTGACATTTTCTTCATCCTCTGCTGCCACCGGGCCCTCTCTCCTTTTAGATGT-TGAACATATTCATCCCTCTCTAGATGGGCTTCTTTTAGCGACTCCTTCAACTGCAAGAATGGGCACAGAAGTTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGTCATCTTCCTTC--CCTCCCTCCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1467369 399 +   1584492 TGCAAACCTGCCCAAAGCACAGGGGAAA-----------------AGCACCCTGGAGAGAGG--------GGCTGGTGGCTGG-----------TGGCTGCCATCTCCC-----------TCTCTGCCCCCACCTCCACAAAGCCCAGACCCATGACCACCTCTGGCTGTA----------------t-----------------attcccatgttacagatgc-----------ccagaaagatccagtgacctatc-taaggt---GGCGGGGCTGAAGGGTCAGATCTCACCTCCTGCCACATTTTTCTCATCCTCTGCTGCCACTGGGCCCTCTCTCCTTTTAGATGT-TGAGCATATTCCTCTCTCTCCAGATGGGCTTGTTTAAGTGAATCCTTCATCTGCAAGAATGGGCACAGAAGTTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGTCATCTTCCTTCCACATCTCTCCC
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        17227 399 +    138091 TGCAAACCTGCCCAAAGCACAGGGGAAA-----------------AGCGCCCTGGAGAGAGG--------GGCTGGTGGCTGG-----------TGGCTGCCATCTCCC-----------TCTCTGCCCCCACCTCCACAAAGCCCAGACCCATGACCACATCTGGCTGTA----------------t-----------------attcccatgttacagatgc-----------ccagaaagatccagtgacccatc-taaggt---ggcggggctgaagggtcagaTCTCACCTCCTGCCACATTTTTCTCATCCTCTGCTGCCACTGGGCCCTCTCTCCTTTTAGATGT-TGAGCATATTCCTCTCTGTCCACATGGGCTTGTTTAAGTGAATCCTTCATCTGCAAGAATGGGCACAGAAGTTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGCCACTTGGGATCATTTTCCTTCCACATCTCTCCC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3039733 400 +   3749464 TGCGAATCTGCCCAAAGCACAGGGGGAA-----------------AGGGCCCTGGAGAGAGG--------GGCTGGTGGCTGGA---------CAGGCTGCCATCTCCC-----------TTTCTGCCCCCACCTCCACAAAGCCCAGACCCATGACCACCTCTGGCTGTAC---------------T-----------------ATTCCCATGTTACAGACAC-----------TTAGAAAGATCCAGTGACCTATC-TAAAAT---GGGAGAGCTGAACGGTCAGACCTCACCTCCTGCGACATTTTTCTCATCCTCTCCTGCCACCGGGCCCTCTCTCCTTTTAGATGT-TGAGCATATTCATCTCTCTCGAGCTGGACTTGTTTCAGTGAATCCTTCATCTGCAAGAATGGGCACAGAAGTTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGTCATCTTCCTTC--CCTCCCTCCC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72429160 397 - 132174527 AGCAATTCTGCCCAAAGCACA-GGGGAA-----------------AGGGCCCTGAAGAGAGG--------GGCTGGTGGCTGGA---------CAGGCTACCATCTCCC-----------TCTCTG-CCCCACCTCCACAAAGCCCAGACTCATGGTCACCTCTGGCTGTGC---------------A-----------------ATTCCTATTTCACAGACAC-----------CCAGAAAGATCCAGTGACCTATCTTAAGGT-----GGGGTCTGAAGGGTCAGGTCTCACCTCCTGTGATATTTTCCGCATCCCCTGCTGCCACCGGAACCTCTCTCCTTTAAGAAGT-TGACA--ATACTCCTCTCTCGAGCTGCACTTGGTGAAGTGATGCCGTCATCTGTCAAAATGAACACAGAAGTTAGGAAGAGCTGTCACTGGTCCTCACCTGCTCATGGCCATCTGGGGTCATCTTCCTTCCACATCCCTCCC
i calJac3.chr10             I 604 C 0
s cebCap1.NW_016107745v1      1011022 398 -   1842816 TTTCAATCTGCCCAAAGCACAGGGGGAA-----------------AGGGCCCTGGAGAGAGG--------GGCTGGTGGCTGGA---------CAGGCTACCATCTCCC-----------TCTCTGCCCCCAGCTCCACAAAGCCCAGTCCCGTGACCACCCCTGGCTGGAC---------------T-----------------ATTCT--TTTTACAGATGC-----------CCAGGAAGATCCAGTGAGCTATC-TAAGGT-----GGGTGCTGAAGGGTCAGCTCTCACTTCTCCTGCCATTTTCAGCAATTGCTGCTGCCACCGCGCCCTCTCTGTTTTGAGCTGT-TGAGCGTATGCGTCTCTTTCTAGCTGAGCTTTCTTAAGACACTCTGTCACCTGCAAGTATGGACTCAGAAGTTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGCCATCTTCCTTCCATATCCCTCCC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9389514 390 +  14477005 TGTGCACCTGTCCAAAGCACAGCGGGAA-----------------A---------------G--------GGCTGGTGGCTGGA---------CAGGCTACCATCTCCC-----------TCTCTGCCCCCACCTCCACAAAGCCCAGACCCATGACCACCTCTGGTTGTGC---------------T-----------------TCTcccattttacagatgc-----------ccacagagatcaagtgacctatc-taaggttgttggggagctgaagggtcaggtctcACCTGCTCTGATACTTGCTGCATCCTCTGCCGCCACATGGCACTCTCTCCTTTGAGATTT-TCTGCATATTTATCTCTCTCCATTTGGAGTTGTCTAACAGACTCCATTACCTGCAAGAATGGGTACAGAATTTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGTCATCTTCCTTCCACATCCCTCCC
i aotNan1.NW_018502759v1    C 0 I 129
s otoGar3.GL873533           30952619 415 +  31380117 TGCGCATCTGTTCAGAGCACA-GGGCAA-----------------AGAACCACAGAGAGAGG--------GGCTGGTAGAAGGA---------CAGACCACCATCTCCCCAAAATGGAGATCTCT------ACCTCCATAAACCCCAAATACACACCCACCTCTGCCTGTGC---------------TCCTCAGCAAGCCATGCAAGTCCCACTTTACAGATTC-----------CCA---AGATCAAGAGACTGATC-TCAGAT-----GGGGGCTGCAGGGTCAGGTCTCACCTTCTCTGACATTTGCTGCATCTTCTCCTGCCACATGGCATTATCTCCTTTCAGAGTC-TCTAAATAATGGTCCCTGTCCATCTGTAGTCGTTTCATCAGCTCAGTAAGCTGCAAGAATGGACTCAGAAATTAAGAGAGGCTGTCACTTG---TTACTTCTTCCTGGCCGCCTATGGTAACCCTCCTTCCACACCCTTCCC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5827209 389 -  61074082 TGTGCATCTGCCCAAATCACAGGGGGGA-----------------TGGGTACATGGGTGGGG--------GGAAGTAAG--------------------ACCATTGCCC-----------TCTCTATTCCCACCTATAAAAA------TTGCACAGCCACCTCTGGCTGCATA-CCAAGTGAT--AGG-----------------ATTCCCCTTTTACTGATGT-----------CCAGAAAGATCAAGCAGCC-----TAAGGT---GGGGGCGCTGAA-GGTCACATCTCACCTGTTCAGACATCTGCTGCATCTTCTGCTGCCAAATGGCATTCTCCTCCTTCAGAGTC-TCTGCATACTGGTCTCTCTCCAGCTGCAGTTGCTTTAGTAAATCTCTCAGCTACAAAAAGGGGCACAGATGTTAGCAGGGGCTGCTGCTGGGCCTAACCAGCTTCTAAGCACCTAGGGCCA---TCCTTCCACACCCCCTGC
i canFam3.chr9              C 0 I 2
s dasNov3.JH564958             404947 460 -    584178 TTTGCATCTGTCCAAAGCACAGGGAGAAGGAATATATGGATATTGAGGAAAGGGGAGAGAGGAATGAATAGGATGGGGAATGGAACTTTAAATCTGGTTACGGTCTCCC-----------TTTCTACCCCATCTTCAAAAAAAACAAAAcatacaacccccattggccacccagcaaagcaacgaata-----------------atacccattttacagctgtgaaaacagaggctagaaagatcaagtgacc--tc-tgggac---agcagttgagaagggtcagaCCTTACCTGCTCTGACAATTGCTGCACCTGCTTCTGCCAAATGGCACTCTCTTCCTTCAAAGTC-TCTGCGTATCTATCTCTCTCCAATTGCAGTTGCTTCAGGGATTCTGCCAGCTGTAGGAATAGGCACAGAAGTGAGGAGGGGCTGTCACTGGACCTCACCTGCGCCCAGTTACCTGGGGTTCTCCTCCTCCCACACTCCTCCC
i dasNov3.JH564958          C 0 C 0
e chlSab2.chr26               7508849  15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=37240.000000
s hg38.chr15_KI270851v1_alt     76884 4 +    263054 TCTG
s panTro5.chr15               9309957 4 +  83230942 TCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25815073 4 +  99763055 TCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        16317 4 -    281578 TCGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75989075 4 + 121039945 TCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8230062 4 + 169600520 TCTG
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              170293858 4 - 171882078 TCTG
i macFas5.chr7              C 0 I 1
s cerAty1.NW_012002601v1      1467768 4 +   1584492 TCTG
i cerAty1.NW_012002601v1    C 0 I 1
s manLeu1.NW_012101289v1        17626 4 +    138091 TCTG
i manLeu1.NW_012101289v1    C 0 I 1
s colAng1.NW_012115677v1      3040133 4 +   3749464 TCTG
i colAng1.NW_012115677v1    C 0 I 1
s calJac3.chr10              72429557 4 - 132174527 TCTG
i calJac3.chr10             C 0 I 1
s cebCap1.NW_016107745v1      1011420 4 -   1842816 TCTG
i cebCap1.NW_016107745v1    C 0 I 103
s otoGar3.GL873533           30953034 4 +  31380117 TCTG
i otoGar3.GL873533          C 0 I 1
s canFam3.chr9                5827600 4 -  61074082 TCTG
i canFam3.chr9              I 2 I 1
s dasNov3.JH564958             405407 4 -    584178 TCTG
i dasNov3.JH564958          C 0 I 1
e aotNan1.NW_018502759v1      9389904 129 +  14477005 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=400170.000000
s hg38.chr15_KI270851v1_alt     76888  98 +    263054 AACACCTCACCTGTGTCAGCTGCGCTTTCAGCAGTGCCTGCTCCCGCATGGACTGCTCTAACTTCCACTCCATAC---GTGCTTTACTGCGGCTGGAGA----AC
s panTro5.chr15               9309961  98 +  83230942 AACACCTCACCTGTGTCAGCTGCGCTTTCAGCAGTGCCTCCTCCCGCATGGACTGCTCTAACTTCCACTCCAGAC---GTGCTTTACTGCGGCTGGAGA----AC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25815077  98 +  99763055 AACACCTCACCTGTGTCAGCTGCGCTTTCAGCAGTGCCTGCTCCCGCATGGACTGCTCTAACTTCCACTCCATAC---GTGCTTTACTGCGGCTGGAGA----AC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        16321 101 -    281578 AAAACCTCACCTGTGTCAGCTGCACTTTCAGTAGTGCCTGCTCCCGCACGGACTGCTCTAACCACCACTCCGTAC---GTGCTTTGCTGCGGCTGGAAA-CTGGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75989079 102 + 121039945 AAAACCTCACCTGTGTCAGCTGTGCTTTTAGCAGTGCCTGCTCCTGTATGGAATGCTCTAACTTCCACTTCATAC---ATGCTTTACTGCGGCTCGAGAACTGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8230067 102 + 169600520 AAAACCCCACCTGTGTCAGCTGTGCTTTCAGCCGTGCCTTCTCCTGTATGGACTGCTCTAACTGCCACTCAATAA---GTGCTTGACTGCGGCTTGAGAACTGGA
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              170293863 102 - 171882078 AAAACCTCACCTGGGTCAGCTGTGCTTTCAGAAGTGCCTGCTCCTGTATGGACCACTCTAACTTCCACTCCATAC---GTGCTTTCCTGTGGCTCGAGGACTGGA
i macFas5.chr7              I 1 C 0
s cerAty1.NW_012002601v1      1467773 102 +   1584492 AAAATCTCACCTGGGTCAGCTGTGCTTTCAGAAGTGCCTGCTCCCGTGTGGACCACTCTAACTTCCACTCCATAC---ATGCTTTCCTGTGGCTCGAGGACTGGA
i cerAty1.NW_012002601v1    I 1 C 0
s manLeu1.NW_012101289v1        17631 102 +    138091 AAAACCTCACCTGGGTCAGCTGTGCTTTCAGCCGTGCCTTCTCCTGTATGGACTGCTCTAACTGCCACTCAATAA---GTGCTTGACTGCGGCTTGAGAACTGGA
i manLeu1.NW_012101289v1    I 1 C 0
s colAng1.NW_012115677v1      3040138 102 +   3749464 AAAACCTCACCCGTGTCAACTGTGCTTTCAGCACTGCCTGCTCCCGTATGGACCGCTCTAACTTCCACTCCATAT---GTGCTTTCCTGTGGCTCGAGAACTGGA
i colAng1.NW_012115677v1    I 1 C 0
s calJac3.chr10              72429562  95 - 132174527 AAAGCCCCACCTGTGTCATGTGTGCTTTTAGCAGTGCCAGCTCCTTTCTGGAGTGCTGTGACT---GCTCGAGGA---CTGCTTCACAGTGGTGTAAGGAC----
i calJac3.chr10             I 1 I 4
s otoGar3.GL873533           30953039 101 +  31380117 AAAGCCTCACCTCAGCCACCCGTTTCTCCAGCTTTGCCCGCTCCTCCAAGGCCTGTTGTAATTGCTGGTTGCTATTAAGGGCTTCAGACGGGCTAGTGAAC----
i otoGar3.GL873533          I 1 I 4
s canFam3.chr9                5827605 101 -  61074082 AAGGCCTCACCTCCCCGACGTGGGCCTCCAGCTGTGTCCGCTCTTCCAGGGCCTGGTGTAACTCCTGGCTGCTGTCAGGGCTTTTGGATTGACTAGAAAAC----
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             405412  97 -    584178 AAAACCTTACCTGCCCCACATGTATCTCCAGCTGTGCCCGCTCCTCCATGGCCTGCTGTAACTGCTCACTGCTATCAGGGGTTCCA----GGCTGGAGAGT----
i dasNov3.JH564958          I 1 C 0
e aotNan1.NW_018502759v1      9389904 129 +  14477005 I
e cebCap1.NW_016107745v1      1011424 103 -   1842816 I
e chlSab2.chr26               7508849  15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=155012.000000
s hg38.chr15_KI270851v1_alt     76986 25 +    263054 -----TGC----TGAAGAGTGAGAAGTTTCAATC
s panTro5.chr15               9310059 25 +  83230942 -----TGC----TGAAGAGTGAGAAGTTTCAATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25815175 25 +  99763055 -----TGC----TGAAGAGTGAGAAGTTTCAATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        16422 25 -    281578 -----TGG----TGAAGAGTGAGAAGTTTCAATC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75989181 25 + 121039945 -----TGG----TGAAGAGTGAGAAGTTTCAATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8230169 25 + 169600520 -----TGG----TGAACAGTGAGAAGTTTCCATC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170293965 25 - 171882078 -----TGG----TGAAGAGTGAGAAGTTTCAATC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1467875 25 +   1584492 -----TGG----TGAAGAGTGAGAAGTTTCCATC
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        17733 25 +    138091 -----TGG----TGAAGAGTGAGAAGTTTCCATC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3040240 25 +   3749464 -----TGG----TGAAGAGTGAGAAGTTTCTATA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72429661 25 - 132174527 -----TGG----TGAAGTGTGAGAAGTTTCGATC
i calJac3.chr10             I 4 C 0
s cebCap1.NW_016107745v1      1011527 25 -   1842816 -----TGG----TGGAGAGGGAGAAGCTTCAATC
i cebCap1.NW_016107745v1    I 103 C 0
s otoGar3.GL873533           30953144 25 +  31380117 -----TGG----TGAAAAATGAGGAGGTCAGATC
i otoGar3.GL873533          I 4 C 0
s canFam3.chr9                5827706 29 -  61074082 -----TGGAGAATGGAAAAGGAGAAGGTTAGATG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             405509 30 -    584178 TAACTAGA----TGGAGAAAAGCAAGGTTAGATC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9389904 129 +  14477005 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=534951.000000
s hg38.chr15_KI270851v1_alt     77011 72 +    263054 TGGGGAGGCCGGGCCATTCC----ACACAGTGCCCCTT------AAAAGGGCCAGGGCTAGGCCCAATATACAACTC--GGTCA
s panTro5.chr15               9310084 72 +  83230942 TGGGAAGGCCGGGCCATTCC----ACACAGTGCCCCTT------AAAAGGGCCAGGGCTAGGCCCAATATACAACTC--GGTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25815200 72 +  99763055 TGGGGAGGCCGGGCCATTCC----ACACAGTGCCCCTT------AAAAGGGCCAGGGCTAGGCCCAATATACAACTC--GGTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        16447 70 -    281578 TGGAGAGCCTGGGCATTTCC----ACACAGTGCCCCTT------AAAAGGGCTA-GGCTAGGCCCAGTATA-AACTC--GGTCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75989206 72 + 121039945 TGGGGAGCCTGGGCCATTCC----ACACAGTGCCCCTT------AAAAGGGCCAGGGCTAGGCTCAATAAACAACTC--AGTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8230194 72 + 169600520 TGGGGAGCCCGGGCCATTCC----ACACAGTGCCCCTT------AAAAGGGCTAGGGCTAGGCTCAATATACAACTC--GGTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170293990 72 - 171882078 TGGGGAGCCTGGGCCATTCC----ACACAGTGCCCCTT------AAAAGAGCTAGGGCTAGGCTCAATATACAACTC--GGTCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1467900 72 +   1584492 TGGGGAGCCCGGGCCATTCC----ACACAGTGCCTCTT------AAAAGGGCTAGGTCTAGGCTCCATATACAACTT--GGTCA
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        17758 72 +    138091 TGGGGAGCCCGGGCCATTCC----ACACAGTGCCTCTT------AAAAGGGCTAGGGCTAGGCTCAATATACAACTT--GGTCA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3040265 72 +   3749464 TAGGGAACCTGGGCCATTCC----ATACAGTGCCCCTT------AAACAAGCTAGGGCTAGGCTGAATATACAACTC--GGTCA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72429686 72 - 132174527 TGGGGAGCCTGGGCCATTCC----ACACAATACCCCTT------CAAAGGGCTGAGGCTAGGCTCAATATACTACTC--GGTCA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1011552 72 -   1842816 TGGAGAGGCTGGGCCATTCC----ACACAGTGCCCCTT------AAAAGGGCTAGGGCTGGGCTTCATACACAACTT--GGTCA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9390033 72 +  14477005 TGGGGAGCCCAGGCCATTCC----ACACAGTGCCCCTT------AAAAGGGCTAGGGCTAGGCTCAATGTACAACTC--GGTCA
i aotNan1.NW_018502759v1    I 129 I 2558
s otoGar3.GL873533           30953169 73 +  31380117 TGGGAAGCCCAAGCTATTCC----ACACAGTGCTCCCC------CAA-GGGCTGGAAGTGGCCTCAGCATACAACTCAGGGTCA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5827735 75 -  61074082 TGGGGAGCCCAGGCTGTTGCAGTAATGCACCCCACCCC------AAAAGGATCTGAGCTGGGAT-AACGTACAATTT--GGCAT
i canFam3.chr9              C 0 I 2
s dasNov3.JH564958             405539 79 -    584178 TAGGGAGCTTAGGCTATTCC----ACAGAATGACCCCTTCCCCAAGAGGGGTCTGAACTAGGATCAACATA-AACTTATGGTCA
i dasNov3.JH564958          C 0 C 0
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=58012.000000
s hg38.chr15_KI270851v1_alt     77083 7 +    263054 GTAAAGA
s panTro5.chr15               9310156 7 +  83230942 GTAAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25815272 7 +  99763055 GTAAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        16517 7 -    281578 GTAAAGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75989278 7 + 121039945 GTAAAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8230266 7 + 169600520 GTAAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170294062 7 - 171882078 GTAAAGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1467972 7 +   1584492 GTAAAGA
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        17830 7 +    138091 GTAAAGA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3040337 7 +   3749464 GTAAAGA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72429758 7 - 132174527 GTAAACA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1011624 7 -   1842816 GTAAAGA
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533           30953242 7 +  31380117 ATAAAGA
i otoGar3.GL873533          C 0 I 1908
s canFam3.chr9                5827812 7 -  61074082 ATACAGA
i canFam3.chr9              I 2 C 0
s dasNov3.JH564958             405618 7 -    584178 ATAAAGA
i dasNov3.JH564958          C 0 I 2798
e aotNan1.NW_018502759v1      9390105 2558 +  14477005 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=18221.000000
s hg38.chr15_KI270851v1_alt     77090 2 +    263054 TC
s panTro5.chr15               9310163 2 +  83230942 TC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25815279 2 +  99763055 TC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        16524 2 -    281578 TC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75989285 2 + 121039945 TC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8230273 2 + 169600520 TC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170294069 2 - 171882078 TC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1467979 2 +   1584492 TC
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        17837 2 +    138091 TC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3040344 2 +   3749464 TT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72429765 2 - 132174527 TC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1011631 2 -   1842816 TC
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533           30955157 2 +  31380117 TC
i otoGar3.GL873533          I 1908 C 0
s canFam3.chr9                5827819 2 -  61074082 TC
i canFam3.chr9              C 0 I 1593
s dasNov3.JH564958             408423 2 -    584178 TC
i dasNov3.JH564958          I 2798 C 0
e aotNan1.NW_018502759v1      9390105 2558 +  14477005 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=140736.000000
s hg38.chr15_KI270851v1_alt     77092 21 +    263054 AAGGCATTTCCAAGCCCGTGG
s panTro5.chr15               9310165 21 +  83230942 AAGGCATTTCCAAGCCCGTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25815281 21 +  99763055 AAGGCATTTCCAAGCCCGTGG
i panPan2.chr15             C 0 I 1089
s gorGor5.CYUI01000141v1        16526 21 -    281578 AAGGCATTTCCCAGCCCGTGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75989287 21 + 121039945 AAGGCACTTCCAAGCCCATGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8230275 21 + 169600520 AAGGCATTTCCAAGCCCATGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170294071 21 - 171882078 GAGGCATTTCCAAGTCTGTGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1467981 21 +   1584492 AAGGCATTTCCAAGCCCATGG
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        17839 21 +    138091 GAGGCATTTCCAAGCCCATGG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3040346 21 +   3749464 GAGGCATTTCCAAGTCTGTGG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72429767 21 - 132174527 AAGGCATTTCCAAGCCCGTGG
i calJac3.chr10             C 0 I 1
s cebCap1.NW_016107745v1      1011633 11 -   1842816 AAG----------GCCCATGG
i cebCap1.NW_016107745v1    C 0 I 1
s otoGar3.GL873533           30955159 21 +  31380117 GAGACATTTCTAAGCCAGTGA
i otoGar3.GL873533          C 0 I 5
s canFam3.chr9                5829414 21 -  61074082 AAGCCATGTCCAAGCCCAAGT
i canFam3.chr9              I 1593 I 10
s dasNov3.JH564958             408425 21 -    584178 GAAGCATTTCCAAGCCCATGT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9390105 2558 +  14477005 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=1586.000000
s hg38.chr15_KI270851v1_alt     77113 5 +    263054 ----TTTGG
s panTro5.chr15               9310186 5 +  83230942 ----TTTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73913530 5 -  99763055 ----TTTGT
i panPan2.chr15             I 1767 C 0
s gorGor5.CYUI01000141v1        16547 5 -    281578 ----TCTGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75989308 5 + 121039945 ----TCTAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8230296 5 + 169600520 ----TCTGG
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              170294092 5 - 171882078 ----TCTGG
i macFas5.chr7              C 0 I 1
s cerAty1.NW_012002601v1      1468002 5 +   1584492 ----TCTGG
i cerAty1.NW_012002601v1    C 0 I 1
s manLeu1.NW_012101289v1        17860 5 +    138091 ----tctgg
i manLeu1.NW_012101289v1    C 0 I 9878
s colAng1.NW_012115677v1      3040367 5 +   3749464 ----TCTGG
i colAng1.NW_012115677v1    C 0 I 1
s calJac3.chr10              72429789 4 - 132174527 -----CTGG
i calJac3.chr10             I 1 I 1
s cebCap1.NW_016107745v1      1011645 4 -   1842816 -----TTGG
i cebCap1.NW_016107745v1    I 1 I 1
s aotNan1.NW_018502759v1      9392663 4 +  14477005 -----TTTG
i aotNan1.NW_018502759v1    I 2558 I 1
s otoGar3.GL873533           30955185 4 +  31380117 ----TTTG-
i otoGar3.GL873533          I 5 C 0
s canFam3.chr9                5829445 5 -  61074082 ----CGTGG
i canFam3.chr9              I 10 C 0
s dasNov3.JH564958             408446 8 -    584178 TCTCTTTG-
i dasNov3.JH564958          C 0 C 0
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=285428.000000
s hg38.chr15_KI270851v1_alt     77118 40 +    263054 --TTTTT-AAAGAACTCAGTAAAGTTGGAAGGGACAGGGAAAG
s panTro5.chr15               9310191 40 +  83230942 --TTTTT-AAAGAACTCAGTAAAGTTGGAAGGGACAGGGAAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73913535 40 -  99763055 --TTTTC-AAAGAACTCAGTGAAGGTGGAAGGGACAGGGAAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        16552 41 -    281578 --TTTTTAAAAGAACACAGTAAAGTTGGAACGGACAGGGAATG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75989313 38 + 121039945 --TTTTTAAAAGAACTC---TAAGCTGGAAGGGACAGGGAACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8230302 40 + 169600520 --TTTTA-AAAGAACTCAGTAAAGTTGGAAGGGAGAGGGAAAG
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              170294098 40 - 171882078 --TTTTA-AAAGAACTCAGTAAAGTTGGAAGGGACAGGGAAAG
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011934v1       361769 40 +   2379783 --TTTTC-AAAGAACTCAGTAAGGGTGGAAGGGACAGGGAAAG
i macNem1.NW_012011934v1    N 0 C 0
s cerAty1.NW_012002601v1      1468008 40 +   1584492 --TTTTA-AAAGAACTCAGTAAAGTTGGAAGGGACAGGGAAAG
i cerAty1.NW_012002601v1    I 1 C 0
s manLeu1.NW_012102332v1       380871 40 -   3636681 --TTTTC-AAAGAACTCAGTAAGGGTGTAAGGGACAGGGAAAG
i manLeu1.NW_012102332v1    n 9878 C 0
s colAng1.NW_012115677v1      3040373 40 +   3749464 --TTTTA-AAAGAACTCAGTAAAGTTGGAAGGGACAGGGAAAG
i colAng1.NW_012115677v1    I 1 C 0
s calJac3.chr10              72429794 40 - 132174527 --TTTTA-AAAGAACTTAGTGAAGTTGGAATGGACAGGGAAAG
i calJac3.chr10             I 1 C 0
s cebCap1.NW_016107745v1      1011650 40 -   1842816 --TTTTA-AAATAACTCAGTAAAGTTGGAAGAGACAGGCAAAG
i cebCap1.NW_016107745v1    I 1 C 0
s aotNan1.NW_018502759v1      9392668 40 +  14477005 --TTTTA-AAAGAACTTAGTAAGGGTGGAAGGGACAGGGAAAG
i aotNan1.NW_018502759v1    I 1 I 566
s otoGar3.GL873533           30955189 39 +  31380117 --ATTTC-AACAGACTAAATAAGAGTGGAAAACA-AGGGAAAG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5829450 27 -  61074082 -------ACTAGAACTTGGTAAGGGTGGGAGAGA---------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             408454 42 -    584178 TTTTTAT-TAAAAACTCAATAAGGATACAAGACGTAGGCAAAG
i dasNov3.JH564958          C 0 C 0
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=517004.000000
s hg38.chr15_KI270851v1_alt     77158 58 +    263054 AGATCGAATTTATAGCTGGCTAACAGAGGCCCAGAGAGATCAGAtaatattgct---attg
s panTro5.chr15               9310231 58 +  83230942 AGATCGAATTTATAGCTGGCTAACAGAGGCCCAGAGAGATCAGAtaatattgct---attg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73913575 58 -  99763055 AGATTGAATTTAGGGCTGGCTAACAGGGGCCCAGAGCGATCAGATAATATTGCT---ATTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        16593 58 -    281578 AGATTGAATTTATAGCTGGCTAACAGAGGCCCAGAGAGATCAGATAATATTGCT---ATTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75989351 58 + 121039945 AGATCAAATTTATAGCTGGCTAACAGAGGCCCAGAGAGATCAGAtaatattgct---attg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8230342 58 + 169600520 AGATCGAATTTACAGCTGGCTAACAGAGGCCCAGAGAGAGCAGATAATATTGCT---ATTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170294138 58 - 171882078 AGATCGAATTTACAGCTGGCTAACAGAGGCCCAGAGAGATCAGATAATATTGCT---ATTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       361809 58 +   2379783 AGATTGAATTGATAGCTGGCTAACAGGGGCCCAGAGAGATCAGATAAGATTGCT---GTTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1468048 58 +   1584492 AGATCGAATTTACAGCTGGCTAACAGAGGCCCAGAGAGATCAGATAATATTGCT---CTTG
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012102332v1       380911 58 -   3636681 AGATGGAATTGATAGCTGGCTGACAGGGGCCCAGAGAGATCAGATAAGATTGCT---GTTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115677v1      3040413 58 +   3749464 AGATCGAATTTACAGCTGGCTCACAGAGGCCCAGAGAGATCAGATAATATTGCT---ATTG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72429834 58 - 132174527 AGATCCAAGTGACAGCTGGCTAACGCAGGCCCAGAGAGATGAGATCATACTGCT---CTTG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1011690 57 -   1842816 AGATCAAATTTACAGCTGGCTAACAGAGGCCCAGAGAGATCAGATCATATT-CT---ATTC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9393274 58 +  14477005 AGATCGAGTTTATAGCTGGCTAACAGAGGCCCAGAGAGATCAGATAACATTGCT---GTTG
i aotNan1.NW_018502759v1    I 566 C 0
s otoGar3.GL873533           30955228 58 +  31380117 AGATCAAGTTTATGGCTGGCTAACAGAAGCCCAGAGGTATCAGATAtttctttt---tttg
i otoGar3.GL873533          C 0 I 1298
s canFam3.chr9                5829477 44 -  61074082 --------TTCAGAGCTGGCCAGCAGAGGCCCAGACAG------TGGCACTGCT---ATCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             408496 57 -    584178 ----TGAACTGAGAGTTGGTCAGCGGAGGTCCAGAAATATCAGATAATACTGCTTCCATTG
i dasNov3.JH564958          C 0 C 0
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=818922.000000
s hg38.chr15_KI270851v1_alt     77216 116 +    263054 ttattactgttattattacCACTGT-TTG-------AACTtttatggagtgcttcaccagataccatgctagc-------------aatcccatttaatcctcgcaaccaccatgggagacagttactatgatgacc
s panTro5.chr15               9310289 116 +  83230942 ttattactgttattattacCACTGT-TTG-------AACTtttatggagtgcttcaccagataccatgctagc-------------aatcccatttaatcctcgcaaccaccataggaaacagttactatgatgacc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73913633 116 -  99763055 TTATTACTGTTATTActaccattgt-tgg-------aacctttattgagtgcttcaccaggcactatgctaac-------------aatcccatttaatcctcacaacctccataggagatggttactgttattacc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        16651 116 -    281578 TTATTACTGTTATTATTACCACTGT-TTG-------AACCTTTGTGGAATGCTTCAccaggtaccgtgctaac-------------aatcccatttaatcctcgcaaccaccataggagacagttactatgattccc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75989409 114 + 121039945 ttattactgttattattacCACTGT-TTA-------AACCtttatggagtgcttcactaggtaccatgctggc-------------aatcccatttaatcctcacaaccaccataggagttg--caaggtaatcgcc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8230400 116 + 169600520 TTATTACTGTTATTACTACCACTGT-CTG-------AACCtttatggagtgcttcaccaggcaccacgctagc-------------aatcccatttaatcctcacaaccaccataggagacagttactatgattccc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170294196 116 - 171882078 TTATTACTGTTATTActaccactgt-ctg-------aacctttatggagtgtttcaccaggcaccatgctagc-------------aatcccatttaatcctcacaaccaccaaaggagacagttactatgattccc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       361867 113 +   2379783 TTATTACTGTTACTACTTCCACTGT-CAG-------AACCTtt---gagtgcttcaccaggcactgcactaac-------------aaacccattcaatcctcgcaacctccataggagacggttaccattattacc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1468106 116 +   1584492 TTATTACTGTTATTACTAGCACTGT-CTG-------AACCtttatggagtgtttcaccaggtaccatgctagc-------------aatcccatttaatcctcacaaccaacataggagacagttactataatgacg
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012102332v1       380969 113 -   3636681 TTATTACTGTTACTACTCCCACTGT-CAG-------AACCTtt---gagtgcttcaccaggcactgcactaac-------------aaacccattcaatcctcgcaacctccataggagacggttaccattatcacc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115677v1      3040471 116 +   3749464 TTACTACTGTTATTActaccactgt-ttg-------aacctttatggagtgcttcaccaggtatcatgctagc-------------aatcccctttaattctcgcaaccaccataggagacagttactatgattccc
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72429892 114 - 132174527 GTATTACTCTTATGActaccactgt-ttg-------aacctttattga--gcttcaccaggtgctgtgctcac-------------aatcccatttgatcctcacaatcaccatatgagacagttactgtgattacc
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1011747 115 -   1842816 TTATTCCTGTTATTACTACCGCTGT-TGG-------AACCtttattgagtgtgtcaccaggtagtgtggtaac-------------gatcccatttaa-cctcacaaccaccatgtgaggcagttgctaccattacc
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9393332 116 +  14477005 TTATTACCATTATTgctaccactgt-ttg-------aacctttattgagtgcttcaccaggtaccatgctaac-------------aatcccatttaatcctcataaccaccacatgagacagttactattattacc
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9                5829521 115 -  61074082 --ACTACTAGTAGCGTCAGAACACTCCTG-------ACCCTTCACAGAGCATGTCAGCAGCTGCcatgctaac-------------aatcacattcaagctttgcgaccaccacatggggtaggcacgattgtgtct
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             408553 126 -    584178 TTATTACTGCTATTCT---CATTGT-CTGACCATctaacatttattaagtgctttaccaggcaccatgctaacattttacacacaaaaccccatttaatcctca-------catatgaggcagttactattattatc
i dasNov3.JH564958          C 0 C 0
e otoGar3.GL873533           30955286 1298 +  31380117 I
e chlSab2.chr26               7508849  15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=149789.000000
s hg38.chr15_KI270851v1_alt     77332 20 +    263054 tctattgtgtagatgaaaa-a
s panTro5.chr15               9310405 20 +  83230942 tctattgtgtagatgaaaa-a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73913749 19 -  99763055 tctattgtgtagatg-aaa-a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        16767 20 -    281578 tctattgtggagatgaaaa-a
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75989523 20 + 121039945 tctatggtgtagatgaaaa-a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8230516 20 + 169600520 tctattgtgtagatgaaaa-a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170294312 20 - 171882078 tctattgcgtagatgaaaa-a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       361980 20 +   2379783 tctattgtgcagatgaaaa-a
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1468222 20 +   1584492 tctattgtgtagatgaaaa-a
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012102332v1       381082 20 -   3636681 tctattgtgtagatgaaaa-a
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115677v1      3040587 20 +   3749464 tctattgtgtagatgaaaa-a
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72430006 19 - 132174527 tctattgtgtagatgaaaa--
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1011862 19 -   1842816 tctattgggtagatgaaaa--
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9393448 20 +  14477005 tctattgtgtagatgaaaaa-
i aotNan1.NW_018502759v1    C 0 I 283
s otoGar3.GL873533           30956584 20 +  31380117 ttcatttTGTAAGTGAAAA-A
i otoGar3.GL873533          I 1298 C 0
s canFam3.chr9                5829636 18 -  61074082 --gtttttacaggtgaaca-a
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             408679 20 -    584178 cccattttaccgacaaaaa-t
i dasNov3.JH564958          C 0 C 0
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=370.000000
s hg38.chr15_KI270851v1_alt     77352 6 +    263054 ----acatgg
s panTro5.chr15               9310425 6 +  83230942 ----acatgg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73913768 6 -  99763055 ----acatgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        16787 6 -    281578 ----acatgg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75989543 6 + 121039945 ----acatgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8230536 6 + 169600520 ----tcatga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170294332 6 - 171882078 ----ccatgg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       362000 5 +   2379783 -----catgg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1468242 6 +   1584492 ----tcatga
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012102332v1       381102 5 -   3636681 -----catgg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115677v1      3040607 6 +   3749464 ----tcatgg
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72430025 6 - 132174527 ----acatgg
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1011881 6 -   1842816 ----acatgg
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533           30956604 1 +  31380117 -----C----
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5829654 5 -  61074082 -----cacag
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             408699 6 -    584178 cccctc----
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9393468 283 +  14477005 I
e chlSab2.chr26               7508849 15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=815687.000000
s hg38.chr15_KI270851v1_alt     77358 116 +    263054 agtatttgaggttaagt-gcttgcctaagatcacttaggcaga----------gctgggatttaaacacccagatctatccaattctctaagcccatttttct---tGCTGGG-GGTGGGGGCA--CAGCTAG
s panTro5.chr15               9310431 116 +  83230942 agtatttgaggttaagt-gcttgcctaagttcacttaggcaga----------gctgggatttaaacacccagatctatccaattctctaagcccatttttct---tgctgGG-GGTGGGGGCA--CAGCTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73913774 110 -  99763055 ggtattaaaggttaagt-gc-tgcctaagatcactt----aaa----------gctgggatttcaacacccaggtatatctgattctctaagcccattctt-t---cGCTGGA-GGTAGGGGCA--CAGTTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        16793 116 -    281578 agtatttgaggttaagt-gcttgcctaagttcacttaggcaga----------gctgggatataaacacccaggtctatccaattctctaagcccatttttct---tGCTGGG-GATGGGGGCA--CAGATAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75989549 116 + 121039945 agtatttgaggttaagt-gcttgcctaagatcacttaggcaga----------gctgggatttgaacacccaggtctatccgattctctaagcccatttttct---tGCTGGG-GGTGGTGGCA--CAGATAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8230542 116 + 169600520 agtatttgaggttaagc-gcttgccgaagatcactgaggcaga----------gttgggatttgaacacccaggtctatccgattctctaagcccatttttct---tGCTGGG-GATGGGGGCA--CAGATAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170294338 115 - 171882078 agtatttgaggttaaat-gcttgcctaacatcacttaggcaga----------gctgggatttgaacacccaggtctatctgattctctaagccca-ttttct---tGCTGGG-GTTGAAAGCA--CAGATAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       362005 114 +   2379783 ggtactgaaggttaagg-ggttgtctaagatcacttagacaga----------gctgggctttcaacacccaggtatatctgattctgtaagccca-ttcctt---cgctgGG-GGT-AGGGCA--CAGATAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1468248 116 +   1584492 agtatttgaggttaagc-gcttgcctaacatcacttaggcaga----------gttgggatttgaacacccaggtctatccgattctctaagcccatTTTGCT---TGCTGGG-GATGGGGGCA--CAGATAG
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012102332v1       381107 114 -   3636681 ggtactgaagggtaagg-ggttgtctaagatcacttagacaga----------gctgggctttcaacacccaggtatatctgattctgtaagccca-ttcctt---cgctgGG-GGT-AGGGCA--CAGATAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115677v1      3040613 116 +   3749464 agtatttgaggttaagt-gcttgcctaacatcacttaggcaga----------gctgggatttgaacacccaggtctatccaattctctaagcccatttttct---tGCTGGG-GATGGGGGCA--CAGATAG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72430031 114 - 132174527 agtattagaggttaagt-gcttgcataagatcactgagac--a----------gctgggatttgaacacccagatgtatctgattctctaagcccatttttct---tGCTGGG-CATGGAGGCA--CAGATAG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1011887 119 -   1842816 agtattagaggttaagt-ggttgcctaagatcacttagacaga----------gctgggatttgaacacccaggtccatctgatcctctaagtccattttttttcATGCTGGG-TGTGGGGGCA--AAGACAG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9393751 125 +  14477005 AGTATTagaggttaagt-gcttgcctaagatcactcagacagagctggaatttgctgggatttgaacatccaggtatatctgattctctaaatccatttgttc---t-ctGGG-GGTGGGGCCA--CAGATAG
i aotNan1.NW_018502759v1    I 283 C 0
s otoGar3.GL873533           30956605 113 +  31380117 AATATTTagaggttaat-gctcacctaaggtcact----caga----------gatgggttttacacacccagggctatctaattctctaagccca-cttttt---ccCTGGG-GGTGGGGGTATGCAGATAT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5829659 115 -  61074082 aatatcacagattcagtcgtttgcctaaaatccccatcggaaa----------gctagaat-taaacatccag-tccgtctgattcTTCACCTACA-TTTTCT---CCCTGGGTTGGGGAAGCA--GGGATAA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             408705  95 -    584178 agtatt--acgtttagt--------------cacataggcaga-----------ctggaatttgaccatccaggtctatctga--ctataaCTATA-TTTTCT---TCTTGTG-GGGGAGGGTT--GCCAT--
i dasNov3.JH564958          C 0 C 0
e chlSab2.chr26               7508849  15 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=388682.000000
s hg38.chr15_KI270851v1_alt     77474 46 +    263054 GAAGGGGAAAATTA-------------ATCTtttgttcactttttgaaaggataataca
s panTro5.chr15               9310547 46 +  83230942 GAAGGGGAAAATTA-------------ATCTtttgttcactttttgaaaggatgataca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73913884 46 -  99763055 GAAGGAGGAAATTA-------------ATCCTTTGTTGAATTTTTGAAAGGATGATACG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        16909 46 -    281578 GAAGGGGAAAATTA-------------ATCTtttgttcactttttgaaaggatgataca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75989665 46 + 121039945 GAAGGGGAAAATTA-------------ATATtttgttcactttttgaaaggatgatacg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8230658 46 + 169600520 GAAGGGGACAATTA-------------ATCTtttgtttactttttgaaaggatgacaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170294453 46 - 171882078 GAAGGGGAAAAATA-------------ATCTtttgttcagtttttgacacgatgatacc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       362119 42 +   2379783 GAAGGAGGAAATTA-------------ATCCtttgttgactctttga----atgataca
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1468364 46 +   1584492 GAAGGGGAAAATTA-------------ATCTtttgtttactttttgaaaggatgacaca
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7508864 46 +  58131712 GAAGGAGGAAATTA-------------ATCAtttgttgacattttgaaaggatgataca
i chlSab2.chr26             I 15 C 0
s manLeu1.NW_012102332v1       381221 46 -   3636681 GAAGGAGGAAATTA-------------ATCCtttgttgactctttgaaagaatgataca
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115677v1      3040729 46 +   3749464 GAAGGGGAAAATTA-------------ATCTtttgtttacttcctgaaaggatgataca
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72430145 46 - 132174527 CAAGGGGGAAGTTA-------------ATCTTTTGTTCAGTTTTTGAAAAAATGATACA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1      1012006 46 -   1842816 GACGGGGGAAGTTA-------------ATCTTCTGCtcactttttgaaaggatgataca
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9393876 46 +  14477005 GAAGGGGGTAATTA-------------ATCTTTTGTTCACGTTTTGAAAGGATGATACA
i aotNan1.NW_018502759v1    C 0 I 435
s otoGar3.GL873533           30956718 40 +  31380117 GAAGAGGGAAATTA-------------ATCTTTTGTTCAA-TTTTGACAGTATA-----
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5829774 53 -  61074082 --GGAGTGGAATTAAATTTGCATTGTGATCCTCTGTCCCTTTTTTGA----ATGATCTG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             408800 58 -    584178 GGGGGGCGGGATTAAGTCTGTAGTTT-AACCttttttcattttttgagtggataataca
i dasNov3.JH564958          C 0 C 0
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=799898.000000
s hg38.chr15_KI270851v1_alt     77520 122 +    263054 ttcacatagtcccaaactcagaagatacagaagggaagtatctcccagccacccTGTTGCTCTCTCCTGAG--TTTTT--ATGAACACTTGCAAACATATTTTATGTATATTATCATAATATGTAC
s panTro5.chr15               9310593 122 +  83230942 ttcacatagtcccaaactcagaaggtacagaagggaagtatctcccagccaccctgttgctctctcctgag--TTTTT--ATGAACACTTGCAAACATATTTTATGTATATTATCATAATATGTAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73913930 124 -  99763055 TTCGCATAGTCCAAAACTCAGAAAGTCCAGAAGGGAAATATCTCCCCCCAACACTGTGCCTCTATCCTGAGTTTTTTT--ATGAATCCTTACAAACGTGTTTTATGTATATTACCATAATATGTAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        16955 123 -    281578 ttcacatagtccaaaactcagaaggtacagaagggAAGTATCTCCCAGCCATCTTGTTGCTCTCTCCTGAA-TTTTTT--ATGAACGCTTGCAGACATGTTTTATGTATATTATCATAGTATGTac
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75989711 123 + 121039945 ttcgcatagtccaaaactcagaaggtacagaagggaagtatctcccagccaccttgttgctctctccTGGG-TTTTTA--ATGAACCCTTGCAAACATGTTTTATGTCTATTATCATAATATGGac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8230704 125 + 169600520 ttcgtatagtccaaaactcagaaggtacagaagggAAGTATCTCCCAGCCGCCCTGTGGCTCTCTCCTGAG-TTTTTTTTATGAACCCTTGCAGACATGTTTTCTGTATATTATCATAATATGTac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170294499 122 - 171882078 tttgcatagtccaaaactcagaaggtacagaagggaagtatctcccagccaccttgttgctctctcccgag-tttttt---tgaactgttgcagacatgttttatgtatactatcataatatgtgc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       362161 123 +   2379783 ttggcgtagtccaaaactcagaaggtacagaagggaaatacctcccatacacactgttcctgtctcctgag-tttttt--atgaatccttacacatatgttttaggtatattagcatactacgtag
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1468410 125 +   1584492 ttcgtatagttcaaaactcagaaggtacagaagggAAGTATCTCCCAGTCGCCCTGTGGCTCTCTCCTGAG-TTttttttatgaacccttgcagacatgttttctgtatattatcataatatgtac
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7508910 123 +  58131712 ttcgaatcgtccaaaactcagaaagtacagaagggaaatatctccccccaacactgttcctctctcctgag-atgttt--atgaatccttacaaacatgtttattgtatattcccataatacatac
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       381267 123 -   3636681 ttggcgtagtccaaaactcagaaggtacagaagggaaatacctcccatgcacactgttcctgtctcctgag-tttttc--atgaatccttacacatatgttttaggtatattagcataatacgtag
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115677v1      3040775 122 +   3749464 ttcgcatagttcaaaactcagaaggtacagaagggaagtatctcccagccaccctgtcgctctctcctgag-ttttct--atgaa-ccttgcagacatgttttctgtatattatcatagtatgtac
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72430191 119 - 132174527 TTCACATAATCCAAAACTCAGAAGGTACAGTAAGGAAGTACCTCCCAGTCTTCCGGGTGCTTTCTCCTGAG-TTTTTT---TGAGCCCTTgcagacacgttttgtgta---tattctagtacacac
i calJac3.chr10             C 0 I 25
s cebCap1.NW_016107745v1      1012052 121 -   1842816 ttcacatagtccaaaactcataaggtacagaagggAAGTATCTCCCAGCCACCT--GTGCTCTCTCCTGAG-TGTTTT--ACAAATCCTTGCAGACATGTTTTATGTATTTTAATACAGTacacac
i cebCap1.NW_016107745v1    C 0 I 26
s otoGar3.GL873533           30956758  97 +  31380117 TTCACACAGTTCAAAACTCAGAAAGTACAGA----AAATGTCT-CCAGCCACCCTGTTCCTCTCTC--AAT-TATTTT--GTGAATCCT-----ATTTATATTATAAATACT--------------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5829827  87 -  61074082 TTCATACGGCCCACCACTCAGACTGTACAGAGGTGA----------------TCTGTTCCTCTC-CCTGGG--TTTTT--ATAATTCCTTTCACACACCT------TGTATTAC------------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             408858 107 -    584178 ttcacctggaccaaaattcagaaggtacagaagtaaaaagtctccTAGTGGTGCTGTT--TGTCTCCCGAG-TTTCCA--ATGCATTCTTTAGGACACATTTTTTATATATT--------------
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9393922 435 +  14477005 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=1261093.000000
s hg38.chr15_KI270851v1_alt     77642 166 +    263054 ACAC--------------------------ACACAC----------------AC--------GTTTCCTCTCTCTACAGAAATGGTAACATACTAAAGGTACTCTTCTGTACCTTCACAGTACAAGTACCCAATACCC-CACTTAGGACTTGGCCAAGACCACAGCCAGGTAAA-----GGCATGGCAGGCACTTGGCCTCCAAGCTCTACGTCCTGTGCTC
s panTro5.chr15               9310715 168 +  83230942 ACAC--------------------------ACACAC--------------CCAC--------GTTTCCTCTCTCTACAGAAATGGTAACACACTAAAGGTACTCTTCTGTACCTTCACAGTACAAGTACCCAATACCC-CACTTAGGACTTGGCCAAGACCACAGCCAGGTAAA-----GGCATGGCAGGCACTTGGCCTCCAAGCTCTGTGTCCAGTGCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73914054 174 -  99763055 ACAC--------------------------ACACAC--------ATATACACCT--------GCCCCCTCTCTCCACACAAATAATAACATACTCAAGATACTCTTCTGTACCTTTATGGTACAAGTACCCTAACCGC-CACTTAGgacttggccaaggccacagccaagtatg-----ggcagggcggacacttggcctctgagctctatgtccagtgctc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        17078 182 -    281578 acac--------------------------acacacacccacacacaTGCACGC--------GTTTCCTCTTTCTACAGAAATGGTAACATACTAAAGGTACTCTTCTGTACCTTCACAGTACAAGTACCCAATACCC-CACCTAGGACTTGCCCAAGACCACAGCCAGGTAAG-----GGCGGGGCAGGCACTTGGCCTCCAAGCTCTGCGTCCAGTGCTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75989834 173 + 121039945 acac--------------------------a-acac--------acacacacac--------GTTTCCTCTCTCTACAGAAATGGTAACATATTAAAGGTACTCTTCTGTACCTTCACAGTACGAGTACCCAATACCC-CACCTAGGACCTGGCCAAGACCACAGCCAGGTAAG-----GGCAGGGCAGGCACTTGGCCTCCAAGCTCTGTGTCCAGTGCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8230829 179 + 169600520 acac----------------acacacacatacacac----------acacacac--------GTTTCCTC--TCTACAGAAATGGTATCATACTAAAGGTACTCTTCTGTACCTTCGCAGTACAAGTACCCAATACCC-CACCTAGGACTTGGCCAAGACCACAGCCAGGTAAG-----GGCAGGGCAGGCACTTGGCctccacgctctacgtccagtgct-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170294621 170 - 171882078 acac--------------------------acacac----------acacacac--------gtttcttc--tctacagaaatggtattatactaaaggtactcttctgtaccttCACAGAACAAGTACCCAATACCC-CACCTAGGACTTGGCCAAGACCCCAGCCAGGTAAG-----GGCAGGGCAGGCACTTGGCCTCCAAGCTCTGCATCCAGTGTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       362284 172 +   2379783 ccac--------------------------acacat----------gtatgttt--------gttccctctttctacacaaatggtaacattctaaagatactcttctgtatcttCATGGTACAAGTACACTAACCCC-TGCCTAGGACTTAGCAAAGGCCACAGCCACGTCTG-----GGCAGGGTGGGCTCTTGGCCTCGGAGCTCTGTGTCCGGTGCTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1468535 198 +   1584492 acacacacacacacacacacacacacacacacacac----------acacacag--------gtttcctctctctacagaaatggtagcatactaaggatactcttctgtaccttCACAGTACAAGTACCCAATACTC-CACCTAGGACTTGGCCAAGACCACAGCCAGGTAAG-----GGCAGGGCAGGCACTTGGCCTCCAAGCTCTACGTCCAGTGCTC
i cerAty1.NW_012002601v1    C 0 I 10
s chlSab2.chr26               7509033 180 +  58131712 acac--------------------------acacac----------acacacacacacacaggctccctctctcaacacaaataataacgtactcaagctactcttctgtaccttgATGGTATAAGTATCCTAACTGC-CACTTGGGACTTGGCCAAGGCCACAGTCAAATATG-----GGCAGGGCGGGCACTTGGCCTGCGAGCTCTATGTCCAGTGCTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       381390 172 -   3636681 ccac--------------------------acacat----------gtacgttt--------gttccctctctctacacaaatggtaacattctaaagatactcttctgtaccttCATGGTACAAGTACACTAACCCC-TGCCTAGGACTTAGCAAAGGCCACAGCCACGTATG-----GGCAGGGTGGGCTCTTGGCCTCGGAGCTCTGTGTCCGGTGCTC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115677v1      3040897 172 +   3749464 acac--------------------------acacac----------acacagag--------gtttccgctctctacagaaatggtaacatactaaaggtactctcctgtaccttCACGAGTAAAGTACCCAATATCC-CACCTAGGACTTGGCCAAGACCCCAATCAGGTAAG-----GGCAGGGGAGGCACTTGGCCTCCAAGTTCTGTGTCCAGTGCTC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72430335 160 - 132174527 ----------------------------------ac----------acacacac--------gtttcctctctctacacaaatggtaacatactaaaggtactcttttgtaccttCACAGTACAAGTACCCAATTCCC-CACTGAGGACTCTGCCAAGGACA----CAGGTAAG-----GGCGGGGCAGGCACTTGGCTTCGGAACTCTGCGTCCAGTGCTC
i calJac3.chr10             I 25 C 0
s cebCap1.NW_016107745v1      1012199 165 -   1842816 --------------------------------acac----------acacacac--------aTTTTctctctttacacaaatcgtaacatactagaggtactcttctgtacTGTTACAGTCCAAGTACCCAGTCCCC-AACT-AGGACTTGGCCAAGGCCACAGCCAGGAAAG-----GGCAAGGCGGGCATTTGGCCTCTGAGCTCTGCGTCCAGTGCTG
i cebCap1.NW_016107745v1    I 26 C 0
s aotNan1.NW_018502759v1      9394357 166 +  14477005 --------------------------------acac----------acacacat--------gttccctctctctacacaaatggtaacacactaaagatactcttctgtatcttCACAGTACAAGTATCATATCCCC-TACCTAtgacttggccaaggccacaaccaggaaag-----ggaagggcaggcacttggcctccgagctctgtgttcagtgttt
i aotNan1.NW_018502759v1    I 435 C 0
s otoGar3.GL873533           30956855 171 +  31380117 --------------------------------ACAC----------ACAAGCAC--------GTTCCCTCTCAACCTATAAACTGTAACATACTAAAGTTATTCTTCTGCACCTTCATAGCCCAAGTACAGTATACCCTCTTCTAGCACTTGGTCAAGGCCACCTGCAGTCAAGAGCAAGGCAGAGCAGGCACTCAGTGTGC-AGCTCTGCATCTGGTACTC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5829914 126 -  61074082 ------------------------------------------------ACACAT--------ACTTCC-CTTCCTATACAAATGGTAACATACGAAAAAGACTGTTCTGTact--------------------------cagccaagac----------ccacagccagtgaaggg---ggcagggctgtctctcagggtctggactctacattcagtgctc
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             408965 147 -    584178 -----------------------------------------------CAAGCAT--------ATTCctt---tctacacaaatggtaataaactacatacactgttctgcaccctCACAGTCCAAACACCATGTCCCT-TCTC----------CCAGGGCCAAAACCAGTCAAT-----GACAAGGATAGAACTCGGGCTCC-TGCTCCAGATCCAGTGCGC
i dasNov3.JH564958          C 0 C 0
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=45169.000000
s hg38.chr15_KI270851v1_alt     77808 14 +    263054 TCTCCC-CAGAGTGC
s panTro5.chr15               9310883 14 +  83230942 ACTCCC-CAGAGTGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73914228 14 -  99763055 gctccc-cacagtgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        17260 14 -    281578 ACTCCG-CACAGTGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990007 14 + 121039945 ACTCCC-CACAGTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231008 10 + 169600520 ---ccc-cgccgca-
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              170294791 13 - 171882078 ACCCCC-CACCGCG-
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011934v1       362456 13 +   2379783 GTTCCC-CACAGCA-
i macNem1.NW_012011934v1    C 0 I 1
s chlSab2.chr26               7509213 13 +  58131712 ACTCCT-CGCGGCG-
i chlSab2.chr26             C 0 I 1
s manLeu1.NW_012102332v1       381562 13 -   3636681 GTTCCC-CACAGCA-
i manLeu1.NW_012102332v1    C 0 I 1
s colAng1.NW_012115677v1      3041069 13 +   3749464 GCTCCC-CACCGCA-
i colAng1.NW_012115677v1    C 0 I 1
s calJac3.chr10              72430495 13 - 132174527 GCTCCC-CACAGTG-
i calJac3.chr10             C 0 I 1
s cebCap1.NW_016107745v1      1012364 13 -   1842816 GCTCCC-CATAGTG-
i cebCap1.NW_016107745v1    C 0 I 1
s aotNan1.NW_018502759v1      9394523 13 +  14477005 gctccc-cacagtg-
i aotNan1.NW_018502759v1    C 0 I 1
s otoGar3.GL873533           30957026 11 +  31380117 --TCCC-CACAGCA-
i otoGar3.GL873533          C 0 I 1
s canFam3.chr9                5830040 13 -  61074082 agtcca-GAAAGCA-
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             409112 12 -    584178 ACTCCAGGACAG---
i dasNov3.JH564958          C 0 C 0
e cerAty1.NW_012002601v1      1468733 10 +   1584492 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=150307.000000
s hg38.chr15_KI270851v1_alt     77822 21 +    263054 CCCCCCCAC-------TCACCCACAGCA-
s panTro5.chr15               9310897 20 +  83230942 TCCCCA-AC-------TCACCCACAGCA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73914242 20 -  99763055 tccCCA-AC-------TCACCCACAACA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        17274 20 -    281578 CCCCCA-AC-------TCACCCACAGCA-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990021 20 + 121039945 CCCCCA-AC-------TCACCCACAGCA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231019 20 + 169600520 ccccca-AC-------TCACCCACAGCA-
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              170294805 20 - 171882078 CCCCCA-AC-------TCACCCACAGCA-
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011934v1       362470 20 +   2379783 CCTGCA-GC-------TAACCTGCAGCA-
i macNem1.NW_012011934v1    I 1 C 0
s cerAty1.NW_012002601v1      1468743 20 +   1584492 CCCCCA-AC-------TCACCCACAGCA-
i cerAty1.NW_012002601v1    I 10 C 0
s chlSab2.chr26               7509227 20 +  58131712 CCCCCA-AC-------TCACCCACAGCA-
i chlSab2.chr26             I 1 C 0
s manLeu1.NW_012102332v1       381576 20 -   3636681 CCTGCA-GC-------TAACCCACAGCA-
i manLeu1.NW_012102332v1    I 1 C 0
s colAng1.NW_012115677v1      3041083 20 +   3749464 CCCCCA-AC-------CCACCCACAGCA-
i colAng1.NW_012115677v1    I 1 C 0
s calJac3.chr10              72430509 20 - 132174527 CCCCTA-AC-------TCACCCACAGCA-
i calJac3.chr10             I 1 C 0
s cebCap1.NW_016107745v1      1012378 20 -   1842816 CCTTCA-AC-------TCACCCACAGCA-
i cebCap1.NW_016107745v1    I 1 C 0
s aotNan1.NW_018502759v1      9394537 20 +  14477005 ttcCCA-AC-------TCACCCACAGCA-
i aotNan1.NW_018502759v1    I 1 C 0
s otoGar3.GL873533           30957038 20 +  31380117 TCCCTA-TC-------TCAAACATGGTA-
i otoGar3.GL873533          I 1 C 0
s canFam3.chr9                5830054 26 -  61074082 -CCCCA-ACTGCTAAGTCCCCCAAGACA-
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             409124 12 -    584178 -----------------CACTCCCAACCA
i dasNov3.JH564958          C 0 C 0
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=133891.000000
s hg38.chr15_KI270851v1_alt     77843 16 +    263054 GCTGACTCAGTCCCAA
s panTro5.chr15               9310917 16 +  83230942 GCTGACTCAGTCCCAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73914262 16 -  99763055 GCCGACTCAGCCCCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        17294 16 -    281578 GCTGACTCGGCCCCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990041 16 + 121039945 GCTGACTCAGCCCCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231039 16 + 169600520 GCTGACTCAGCCCCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170294825 16 - 171882078 GCTGACTCAGCCCCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       362490 16 +   2379783 GCCGACTCAGCCCCAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1468763 16 +   1584492 GCTGACTCAGCCCCAG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7509247 16 +  58131712 GCCGACTCAGCCCCCG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       381596 16 -   3636681 GCCGACTCAGCCCCAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115677v1      3041103 16 +   3749464 GCTGACTCAGCTCCAG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72430529 16 - 132174527 GCTGACTTGTCCCCAG
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9394557 16 +  14477005 GCTGACTCAGCCCCAG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30957058 16 +  31380117 GCTGACTCATCCTCAA
i otoGar3.GL873533          C 0 I 478
s canFam3.chr9                5830080 15 -  61074082 GTCAGCTCAGCCCTG-
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958             409136  0 -    584178 C
e cebCap1.NW_016107745v1      1012398  0 -   1842816 C
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=2030837.000000
s hg38.chr15_KI270851v1_alt     77859 274 +    263054 GCTGCCGCTAACAACC---ATACAAAAAAGCAGTGAGAAATGG-CCATGCTGCCTTCTGG--GCA---G---GACACTCCATCCTGCAG-AAGGGACCTTTAGGCTCACTCCTCTGTCTGCGAAGCCAGGCTACCAGGGGACGCGGCAGGTGGTTGGACTCACCCTCTCCGCCTTCTTCTTCTGTGTGGCGGTGACAGCAGAGAGAGCCCGCTCTAACTCTCCTTTACGCTGCAATGAATGTTGCAGACGGACGGCCAGATCCTTGGACTCTTCTGTAATGAGAGA-G
s panTro5.chr15               9310933 274 +  83230942 GCTGCCGCTAACAACC---ATACAAAAAAGCAGTGAGAAATGG-CCATGCTGCCTTCTGG--GCA---G---GACACTCCATCCTGCAG-AAGGGACCTTTAGGCTCACTCCTCTGTCTGCGAAGCCAGGCTCCCAGGGGACGGGGCAGGTGGTTGGACTCACCCTCTCCGCCTTCTTCTTCTGTGTGGCGGTGACAGCAGAGAGAGCCCGCTCTAACTCTCCTTTACGCTGCAATGAATGTTGCAGACGGACGGCCAGATCCTTGGACTCTTCTGTAATGAGAGA-G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73914278 271 -  99763055 TCTGCCTCTAACAACC---ACACACAAAAGCAGCAAGAAATGG-CCATGCTGCCTTCTGG--GCA---G---GACACTCCATCCTACAG-AAGGGACCTTTAGGCTCACTCCTCCATCTGCGAAGCTGGGCTCCCAAGGGACGGGGCC-GTGTTTGGACTCACCCTATCCGCCTTCTTCTTCTGTGTAGC---GACAGCAGAGAGAGCCTGCTCTAACTCTCCTGCAAACTTCCATGAATCATGCAGGCGGCTGATCAGATCCCTGGCCTCTCCTGGAATGAGAGACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        17310 273 -    281578 GCTGCCACTAAAAACC---ATACAAAAAAGTAGCAAGAAATGG-CCATGCTGCCTTCTGG--GCA---G---GACATGCCATCCTGCAG-AAGGGACCTTTAGGCTCACTCCTCCATCTGC-AAACCAGGCTCCCAGGGGATGGGGCAGGTGGCTGGACTCACCTGGTTTGCCGCCTTCTTCTCTGTGGCGATGACAGCAGAGAGAATCCTCTCTAACTCTCCTTCACACTGCATTGAATGTTGCAGGCGGACAGCCAGGTCCTTGGACTCTTCTGTAATGAGAGA-G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990057 268 + 121039945 GCTGCCTCTAACAACC---ATAAACAAAAGCAGCGAGAAATGG-CCATGCTGCCTTCTGG--GCA---G---GACACTCCATCCTGCAG-AAGGGACCTTTAGGCTCACTCCTCCATCTTTGAAGCCAGGCTCCCAGGGGATGGGGCAGGTGGTTGGACTCACGCTGTTCAC------CTTCTGTGTGGTGGCGACAGCAGAGAGAGCCCGCTCCAACTCTCCTATACACTGCAATGAACATTGCAGGTGGCCTGCCAGATCCTTGGACTCTTCTGCAATGAGAGA-G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231055 274 + 169600520 GCTGCCTCTAACAACC---AGACACAAAAGCAGTGAGACATGG-CCATGCCGCCTTCTGG--GCA---G---GCCACTCCATCCTGCAG-AAGGGACTTTTAGGCTCACTCCTCCATCTGCGAAGCCGGGCTCCCAGGGGACAGGGCAGGTGGTTGAACTCACACTGATCTCCTTCTCCTCCTGTGTGGCGGGGACAGCAGACAGAGCCTGCTCTAACTCTTCTATACACTGCAGTGTTTGTTGCAGGCGGCCAGCCAGATCCTTGGACTCTTCTGTAATGACAGA-T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170294841 274 - 171882078 GCTACCTCTAACAACC---ACATACAAAAACAGCAAGAAATGG-TCATGCTGCCTCCTGG--GCA---G---GACACTCCATCCTGCAG-AAGGGACCTAGGGGCTCACTCCTCCATCTGCGAAGCCGGGCTCCCAGGGGACGGGGCAGGTGGTTGGACTCACCGGGTTCGCCTTCTTCTTCTGTGTGGCGGTGACAGCAGAGAGAACCTGCTCTAACTCTCCTTTACGCTGCGATGAACATTGCAGGCGGTCGGCCAGATCCTTGGACTCCTCTGTAATGAGAGA-G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       362506 272 +   2379783 CCTGCCTCTAATATCC---ACACCCAAAAGCAGTACTAAATGGCCCATGCTGCCTTCTGG--ACA---G---GACACTGCATTGTGCAG-AGGGGACCTTTAGGCTCATTCCTCCATCTGTGAAACTGGGCTCCCAGGGGACCGAGCAGGTGGTTGGACTCACCCTGTCTGCCTTCTTGTGCTGTGTGGA---CACAGCAGACAGAGCCTGCTGTAACTCTCCTGCAAAGTGCCAGGAACGATGCAGGCGACCGGCCAGATCCTTGGACTCTCCTGGAATGAGAGA-G
i macNem1.NW_012011934v1    C 0 I 170
s cerAty1.NW_012002601v1      1468779 272 +   1584492 GCTGCCTGTAACAACC---AGACACAAAAGCAGTGAGACAAGG-CCATGCTGCCTCCTGG--GCA---G---GACACTGCATCCTGCAG-AAGGGACTTTTAGGCTCACTCCTCCATCTGCGAAGCCGGGCTCCCAGGGGACAGGGCAGGTGGTTGAACTCACACTGATCTCCTTCTCCTCCTGTGTGGCGGGGACAGCAGACAGAGCCTGCTCTAACTCTTCTATACACTGCAGTGTTTGTTGCAGGCGGCCAGCCAGATCCTTGCACTCTTCTGTAATGAGAG---
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7509263 271 +  58131712 TCAGCCTCTAACCACC---ACACACAAAAGCAGCAAGAAATGG-CCATGCTGCATTCTGG--GCA---G---GACACTCCATCCTGCAG-AAGGGACTTTTAGGCTCACTCCTCCATCTGTGAAGCCGGGTTCCCAGGGGACGGGGCAGGTGGTTGGACTCACCCTGTCAGCCTTCTTCTTCTGTGTAGC---AACAGCAGAGAGATCCCGCTCTAAATCTCTTGCAAAATTCCATGAATCATGCAGGCGGCTGACTAGATGCCTGGACTCTCCTGGAATGACAGA-C
i chlSab2.chr26             C 0 I 1
s manLeu1.NW_012102332v1       381612 272 -   3636681 CCTGCCTCTAATATCC---ACACCCAAACGCAGTACTAAATGGCCCATGCTGCCTTCTGG--GCA---G---GACACTGCATTGTGCAG-AAGGGACCTTTAGGCTCATTCCTCCATCTGTGAAACTGGGCTCCCAGGGGACCGAGCAGGTGGTTGGACTCACCCTGTCCGCCTTCTTGTGCTGTGTGGA---CACAGCAGACAGAGCCTGCTGTAACTCTCCTGCAAAGTGCCAGGAACGATGCAGGCGACCGGCCAGATCCTTGGACTCTCCTGGAACGAGAGA-G
i manLeu1.NW_012102332v1    C 0 I 170
s colAng1.NW_012115677v1      3041119 262 +   3749464 GCTGCCTCTAACAACC---AGTCACAAAAGCAGCGAGAAATGG-TCATGCTGCCTTCTGG--GCA---G---GACACTCCATCCTGTAG-AAGGGACCTTTAGGCTCACTCCTCCATCTGCGAAGCTGGGCTCCCAGGGGATGGGGCAGGTGGTCAGACTCACTCTGT---CCTCCTCCTTCTGTGTGGC---------AGAGAAAGCCCGCTCTAACTCTCCTTTATGCTGCAATGAATGTTGCAGGCGGCCGGCCAGATCCTTGGACTCCTCTATAATGAGAGA-G
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72430545 267 - 132174527 GCTGCCTCTAACAACC---ACACACAAAAGCAGTGAGAAATGG-CCATGCTGCCTTCTGG--GCA-------GACACTCCATCCTGCAG-AAGGCACCTTTAGGCTCA---CTCCATCTGGGAAGCCAGGCTGCCAGGGGATGGGGCAGGTGGTTGGACTCACCCTGTCCGCCTTGTCCTGCTGGGCAGA---GACAGCAGAGAGAGTCCGCTCCAACTCCCCTCTCTGCTGCAAGGCCTTCTGGTGGCAGCCGGCCAATTTATTCAACTCTTCTAGAATGAGAGA-G
i calJac3.chr10             C 0 I 1
s aotNan1.NW_018502759v1      9394573 272 +  14477005 GCTGCCTCTAACAACC---ACACACAAAAGGAGTGAGAAATGGCCCATACTGCCTTCTAG--GCA---G---GACACTCCACCCTGCAA-AAGGGACCTTAAGGCTCACTCCTCCATCTGGGAAGCCAGCCTGCCAGGGGACAGGGCAGGCAGTTGGACTCACCCTGTCTGCCTTCTTTTGCTGAGTGGA---GACAGCAGAAAGAGCCCGCTCCAACTCTCCTACACGCCGCCGGGAATACTGCAGGCGGCTGGCCAGATCTTCGGACTCTCCTGGAATGAGAGA-G
i aotNan1.NW_018502759v1    C 0 I 1
s otoGar3.GL873533           30957552 245 +  31380117 GCTGCTTCTGACAATC---ACAT-CAAAAGCAGGAAGAAATGGTCCATGCTGCACTCTGGCAGTG---G---GACACTCTATCCTGCAG-AAGGGATCTTCAGGCTAACCCCCCCAGTTGGGAAACTGGG----------------------------CTCACCTTTTCTATCTGCTTCTGCTTGGTGGA---GACAGCAGACAGAGTCCTCTCCAGCTCTCCTACACGCTGCCGGGAAGACTGTAGGCGACTGGCAAGATCCTCGGACTCTCCTGGAAGGAGAGA-A
i otoGar3.GL873533          I 478 I 1
s canFam3.chr9                5830095 275 -  61074082 GTTGCTTCTAACCACCTCAAAACTTTAAAGCAGCAAGAAACAGCCCATGCTGCCTTGTGG--GCA---GGAAGACACTCCACCGTGTGG-AAGGGACCTTT---CCCCTTCCCCTGTCGGGGAAGCTGCACCTCCAGCCAGGTGGGTCAGAAGCTGGGCTCACCCTGTCCACCTGCTTCTGCTGTGTGGA---GACAGCAGACAATGTGCGCTCCAGCTCACTGACACGCTGGCGGGAAGACTGCAGGCGACTAGCAAGATCTTCAGACTCTCCTGGAATGACAGA-G
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             409136 233 -    584178 ---------AATAACT----------AAAGCAGCTAGGAACAACCCATCCTGCTTTCTAG--GCATCGA---GGCACTCCATCCTGCAGAAAGGGTCCTGGAGGCTCACTGCCCCATCAGGGAGGCTAGG---------------------------GCTCACCCTGTCCGCCTGCTTCTGCTGAGTGGA---GACAGACGACAGAGTACGCTCCAGTTCTCCTACACGCTGGCGAGAAGACTGCAGGCGACTAGCAAGATCCTCTGTCTCTCCTGGGACGAGAGA-G
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1012398   0 -   1842816 C
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=447583.000000
s hg38.chr15_KI270851v1_alt     78133 68 +    263054 ---TTGAGATG-GGGCCCA--AAGGACTCCCCCTGAAGACCTGTCAAAGTCCCAGGTTGAAGGATGACAGGGTA--
s panTro5.chr15               9311207 68 +  83230942 ---TTGAGATG-GGGCCCA--AAGGACTCCCCCTGAAGACCTGTCAAAGTCCCAGGTTGAAGGATGACAGGGTA--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73914549 68 -  99763055 ---TTCAGATG-TGGCCCA--AAGGACTCCCCCTAAAGGCCTGTCAAAGTGCCAGGTTGAAGGATGATGGGGTG--
i panPan2.chr15             C 0 I 95
s gorGor5.CYUI01000141v1        17583 68 -    281578 ---TTGAGATG-GGGCCCA--AAGGACTCCCCCTGAAGACCTGTCAAAGTGCCAGGTTGAAGGATGACAGGGTG--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990325 68 + 121039945 ---TTGAGATG-GGGCCCA--AAGGACTCCCCCTGAAGACCTGTCAAGGTGCCAGGTTGAAGGATGACAGGGTG--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231329 68 + 169600520 ---GTGAGATG-GGGCCCA--AAGGACTCTCCCTAAAGACCTGTCAAAGTGCCAGGTTAAAGGATGACAGGGCG--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295115 68 - 171882078 ---TTGAGATG-GGGCCCA--AAGGACTCCCCCTAAAGACCTGTCAAAGTGCCAGGCTGAAGGATGACAGGGCG--
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1469051 68 +   1584492 ---TTGAGATG-GGGCCCA--AAGGACTCTCCCTAAAGACCTGTCAAAGTGCCAGGTTGAAGGGTGACAGGGTG--
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7509535 68 +  58131712 ---TTCAGATG-CGGCCCA--AAGGATTCCCCCTAAAGGCCTGTGAAAGTGCCAGGTTGAAGGATGACGGGGTG--
i chlSab2.chr26             I 1 C 0
s colAng1.NW_012115677v1      3041381 68 +   3749464 ---TTGAGATG-GGGCCCA--AAGGACTCCCCCTAAAGACCCGTCAAAGTGCCAGGTTGAAGAATGACAGGGTG--
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72430813 68 - 132174527 ---TTGAGATG-GGGCCCT--AAGGACTCCCACTAAAGACCTGTCAAATTGCCAGGTTGAAGGATAACAGGGTG--
i calJac3.chr10             I 1 C 0
s aotNan1.NW_018502759v1      9394846 68 +  14477005 ---TTGAGATG-GGGCCCA--AAGGACTCCCCCTAAAGGCCTGTCAAAGTGCCAGGCTGAAGGATGATGGGGTG--
i aotNan1.NW_018502759v1    I 1 C 0
s otoGar3.GL873533           30957798 66 +  31380117 ---TCAAGATG-GAGCCCT--ATGGTCTCTCAC-GAAGGCCTGCCAAGGTGGCAGGTTAAAGGGTGAAGGGTC---
i otoGar3.GL873533          I 1 C 0
s canFam3.chr9                5830371 70 -  61074082 ---TCAAAGAG-GAGCCCAGGAAGGAATCCCACCAAAGGCCTGCCAACGTGCCAGGCTATGGGGTGGGAGGATG--
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             409369 74 -    584178 GTACAGAGACGAGAGTCAA--AAGGACGCCCACTGCAGGGCTGACAGTGTGAGAGGGAGAAAGACAAGAGGGGTGT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1012398  0 -   1842816 C
e manLeu1.NW_012102332v1       381884 170 -   3636681 I
e macNem1.NW_012011934v1       362778 170 +   2379783 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=156210.000000
s hg38.chr15_KI270851v1_alt     78201 17 +    263054 CCCAGATTCCCACCTTC
s panTro5.chr15               9311275 17 +  83230942 CCCAGATTCCCACCTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25816391 17 +  99763055 CCCAGATTCCCACCTTC
i panPan2.chr15             I 1089 C 0
s gorGor5.CYUI01000141v1        17651 17 -    281578 CCCAGATTCCCACCTTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990393 17 + 121039945 CCCAGATTCCTACCTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231397 17 + 169600520 CCCAGATTCCCACCTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295183 17 - 171882078 CCCAGATTCCCACCTTC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1469119 17 +   1584492 CCCAGATTCCCACCTTC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7509603 16 +  58131712 -CCAGATTCCCACCTTC
i chlSab2.chr26             C 0 I 89
s colAng1.NW_012115677v1      3041449 17 +   3749464 CCCAGATTCCCACCTTC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72430881 17 - 132174527 CCCAGATTCCCACCTTC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9394914 17 +  14477005 CCCAGATTCCCACCTTC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30957864 17 +  31380117 CCCAGACTCCCACCTTC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5830441 17 -  61074082 TCTAGACTCCCACCTGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             409443 17 -    584178 CCCAGATTCCCACCTGC
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1012398  0 -   1842816 C
e manLeu1.NW_012102332v1       381884 170 -   3636681 I
e macNem1.NW_012011934v1       362778 170 +   2379783 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=177561.000000
s hg38.chr15_KI270851v1_alt     78218 56 +    263054 AAAGTATCTGAGAGAACGTTTCGTGTGGTACAGGTCCGTATTTAGTTTCCCTTTCT
s panTro5.chr15               9311292 56 +  83230942 AAAGTATCTGAGAGAACGTTTCATGTGGTACAGGTCCGTATGTAGTTTCCCTTTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25816408 56 +  99763055 AAAGTATCTGAGAGAACGTTTCATGTGGTACAGGTCCATATGTAGTTTCCCTTTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        17668 56 -    281578 AAAGTATCTGAGAGAACGTTCCATGTGGTACAGGTCTGTATTTAGTTCTTCCTTCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990410 56 + 121039945 AAAGTGTCTGAGAACACCTTTTGTGCGACACAGGTCCGTATGGAGCTCATCTTTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231414 56 + 169600520 AAAGTATCTGAGAGAACGTTTCGTGTGATTCATGTCTGTATTTAGTTTCTTTATCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295200 56 - 171882078 AAAGTATCTGAGCGAACGTTTCGCGTGAAACAGGTCCGTACTTAGTTTCCCTTTCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1469136 56 +   1584492 AAAGTATATGAGAGAGCGTTTCGTGCGATACACGTCAATAGTTAGTTTCTTTTTCT
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3041466 56 +   3749464 GAAGTATCTGAGAGAGCGTTTCGTGCGATACAGGGCTGTACTTAGTTTCCCCTTCT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72430898 56 - 132174527 AAAGTGCCTGGCGGCATGGACCGTGTGGTATAGGGCAGTTTTCAACTGCCCGTTCT
i calJac3.chr10             C 0 I 9
s aotNan1.NW_018502759v1      9394931 56 +  14477005 TTTCTGCCTGGCAGCATGCTGAGTGTGAGCCAGGGCTGTCTGTAACTCAGCTTTCT
i aotNan1.NW_018502759v1    C 0 I 21
s otoGar3.GL873533           30957881 56 +  31380117 TTTCTGCCTGACTGCCTGCTGAGTATGCACCAGTGCTGAATGAAGATCTGACTTTT
i otoGar3.GL873533          C 0 I 9
s canFam3.chr9                5830458 56 -  61074082 TTTCTGCCTGGCTGCCTGCTGTGTGTGGACCAGGGCTGTCTGTAATTCGGTCTTCT
i canFam3.chr9              C 0 I 9
s dasNov3.JH564958             409460 56 -    584178 TTTCTGCCTGACAGCCTGCTGAGTATGAGCCAGGGCAGTCTGTAACTCGGACTTCT
i dasNov3.JH564958          C 0 I 9
e cebCap1.NW_016107745v1      1012398  0 -   1842816 C
e manLeu1.NW_012102332v1       381884 170 -   3636681 I
e macNem1.NW_012011934v1       362778 170 +   2379783 I
e chlSab2.chr26               7509619 89 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=15350.000000
s hg38.chr15_KI270851v1_alt     78274 12 +    263054 GTATGTTCAATC-
s panTro5.chr15               9311348 12 +  83230942 GTATGTTCAATG-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25816464 12 +  99763055 GTATGTTCAATG-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        17724 12 -    281578 GTATGATCGATG-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990466 12 + 121039945 CTGTATTCAATC-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231470 12 + 169600520 GTCTATTCAATC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295256 12 - 171882078 GTACGTTCAATG-
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1469192 12 +   1584492 GTACGTTCAATC-
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3041522 12 +   3749464 GTATATTCAGTC-
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72430963 12 - 132174527 GGATGTTGATTG-
i calJac3.chr10             I 9 C 0
s otoGar3.GL873533           30957946 12 +  31380117 GGATCCCTATGG-
i otoGar3.GL873533          I 9 C 0
s canFam3.chr9                5830523 12 -  61074082 GAATCCCTATGG-
i canFam3.chr9              I 9 C 0
s dasNov3.JH564958             409525 12 -    584178 -GAATCCCAATGG
i dasNov3.JH564958          I 9 C 0
e aotNan1.NW_018502759v1      9394987 21 +  14477005 I
e cebCap1.NW_016107745v1      1012398  0 -   1842816 C
e manLeu1.NW_012102332v1       381884 170 -   3636681 I
e macNem1.NW_012011934v1       362778 170 +   2379783 I
e chlSab2.chr26               7509619 89 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=17381.000000
s hg38.chr15_KI270851v1_alt     78286 2 +    263054 TC
s panTro5.chr15               9311360 2 +  83230942 TC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25816476 2 +  99763055 TC
i panPan2.chr15             C 0 I 1552
s gorGor5.CYUI01000141v1        17736 2 -    281578 TC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990478 2 + 121039945 TC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231482 2 + 169600520 TC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295268 2 - 171882078 TC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1469204 2 +   1584492 TC
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3041534 2 +   3749464 TC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72430975 2 - 132174527 TC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9395008 2 +  14477005 TC
i aotNan1.NW_018502759v1    I 21 C 0
s otoGar3.GL873533           30957958 2 +  31380117 TC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5830535 2 -  61074082 TC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             409537 2 -    584178 TC
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1012398 0 -   1842816 C
e manLeu1.NW_012102332v1       381884 170 -   3636681 I
e macNem1.NW_012011934v1       362778 170 +   2379783 I
e chlSab2.chr26               7509619 89 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=32849.000000
s hg38.chr15_KI270851v1_alt     78288 5 +    263054 TGGAT
s panTro5.chr15               9311362 5 +  83230942 TGGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73914712 5 -  99763055 TGGAC
i panPan2.chr15             I 95 C 0
s gorGor5.CYUI01000141v1        17738 5 -    281578 TGGAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990480 5 + 121039945 TCGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231484 5 + 169600520 TGGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295270 5 - 171882078 TGGAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1469206 5 +   1584492 TGGAT
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3041536 5 +   3749464 TGGAC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72430977 5 - 132174527 TGGAT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9395010 5 +  14477005 TGAAT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30957960 5 +  31380117 TGAAT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5830537 5 -  61074082 TGAAT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             409539 5 -    584178 TGGAT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1012398 0 -   1842816 C
e manLeu1.NW_012102332v1       381884 170 -   3636681 I
e macNem1.NW_012011934v1       362778 170 +   2379783 I
e chlSab2.chr26               7509619 89 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=26902.000000
s hg38.chr15_KI270851v1_alt     78293 5 +    263054 TTGAA
s panTro5.chr15               9311367 5 +  83230942 TTGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73914717 5 -  99763055 CTGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        17743 5 -    281578 TTGAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990485 5 + 121039945 TTGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231489 5 + 169600520 TTGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295275 5 - 171882078 TTGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       362948 5 +   2379783 CTGGG
i macNem1.NW_012011934v1    I 170 C 0
s cerAty1.NW_012002601v1      1469211 5 +   1584492 TTGAA
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012102332v1       382054 5 -   3636681 CTGGG
i manLeu1.NW_012102332v1    I 170 C 0
s colAng1.NW_012115677v1      3041541 5 +   3749464 TTGAA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72430982 5 - 132174527 GTGAC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9395015 5 +  14477005 GTGAA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30957965 5 +  31380117 GTGAA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5830542 5 -  61074082 GTGAA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             409544 5 -    584178 GTGAA
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1012398 0 -   1842816 C
e chlSab2.chr26               7509619 89 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=198135.000000
s hg38.chr15_KI270851v1_alt     78298 18 +    263054 CCTTTGGGAGAAAAGCCA
s panTro5.chr15               9311372 18 +  83230942 CCTTTGGGAGAAAAGCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73914722 18 -  99763055 CCTTTGGGAGAAAAGACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        17748 18 -    281578 CCTTTGGGAGAAAAGCCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990490 18 + 121039945 CCTTTGGGAGAAAAGCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231494 18 + 169600520 CCTTTGGGAGAAAAGCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295280 18 - 171882078 CCTTTGGGAGAAAAGCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       362953 18 +   2379783 TCTTTGGGAGAAAAGACA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1469216 18 +   1584492 CCTTTAGGAGAAAAGTCA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7509708 18 +  58131712 CCTTTGGGAGAAAAGACA
i chlSab2.chr26             I 89 C 0
s manLeu1.NW_012102332v1       382059 18 -   3636681 TCTTTGGAAGAAAAGACA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115677v1      3041546 18 +   3749464 CCTTTGGGAGAAAAGCCA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72430987 18 - 132174527 CCTTTGGTAGAAAAGCCA
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9395020 18 +  14477005 CCTTTGGGAGAAAAGTCA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30957970 18 +  31380117 CCTTTGGGAAAAAAGCCA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5830547 18 -  61074082 CCTTTGGGAAAGAAGGTA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             409549 18 -    584178 CCTTTGGGAGAAAAGCCA
i dasNov3.JH564958          C 0 M 313
e cebCap1.NW_016107745v1      1012398  0 -   1842816 C
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=644061.000000
s hg38.chr15_KI270851v1_alt     78316 83 +    263054 AGCAAGTGCTGAAAGAGAAGGAAAGAAACATTCTCCGGAGGACAGGAG-AAAACTGCACACTGTCCACTCACCTCTA---GCCC---CCt
s panTro5.chr15               9311390 83 +  83230942 AGCAAGTGCTGAAAGAGAAGGAAAGAAACCTTCTCCGGAGGACAGGAG-GAAACTGCACACCCTCCACTCACCTCTA---GCTC---CCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73914740 83 -  99763055 AGCAAATGCTGAAAGAGAAGCAAAGAAACATTCTCCAGAGGGCAGGAG-GGAACTTCACACCCTCCACTCACCTCTA---GCTC---CCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        17766 82 -    281578 AGCAAGTGCTGAAAGAGAAGGAAAGAAACCTTCTCCGGAGGACAGGAG-GAAAC-GCACACCCTCCACTCACCTCTA---GCTC---CCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990508 83 + 121039945 AGCAAGTGCTGAAAGAGAAGGAAAGAAACATTCTCGGGAGGACAGGAG-GAGACTTCACACCCTCCACTCACTTCTA---GCTG---CCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231512 83 + 169600520 AGCAAGTGCTGGAAGAGAAGGAAAGAAACATTCCCCGGAGGACAGGAG-AAAACTTCACACCCTCCACTCACCTCTA---GCTC---CCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295298 83 - 171882078 AGCAAGTGCTGGAAGAGAAGGAAAGAAACATTCCCCGGAGGACAGGAG-AAAACTTCACACCCTCCACTCACCTGTA---GCTC---CCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       362971 86 +   2379783 AGCAGGTGCTGAAAGAGAAGCAAAGAAACCTTCTCCAGAGGACAGGAG-GGAACTTCACCCCCTCCACTCACCTCTA---GCTCTCTCCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1469234 83 +   1584492 AGTAAGTGCTGGAAGAGAAGGAAAGAAACATTCCCCGGAGGACAGGAG-AAAACTTCACACCCTCCACTCACCTCTA---GCTC---CCT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7509726 83 +  58131712 AGCAAGTGCTGAAAGAGAAGCAAAGAAACCTTCTCCAGAGGACAGGAG-AGAACTTCACACCTTCCACTCACCTCTA---GCTC---CCT
i chlSab2.chr26             C 0 I 6079
s manLeu1.NW_012102332v1       382077 80 -   3636681 AGCAAGTGCTGAAAGAGAAGCAAAGAAAC---CTCCAGAGGACAGGAG-GGAACTTCACCCCCTCCACTCACCTCTA---GCTC---CCT
i manLeu1.NW_012102332v1    C 0 I 15
s colAng1.NW_012115677v1      3041564 84 +   3749464 AGCAAGTGCTGAAAGAGAAGGAAAGAAACATTCTCCGGAGGACAGGAGAAAAACTTCACACCCTCCACTCACCTCTA---GCTC---CCT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72431005 84 - 132174527 AGCAAGTGCTGAAAGAGAAGGAAAGAAGCATTCTCCGAAGGATAGGA---GAACACTTCACCCTCCACTCACCTCTAACTGCTC---CCT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9395038 86 +  14477005 AGCAAGTGCTGAAAAAGAAGGAAAGAAACATTCCCCAGAGGACAGGAG-GGAACTCCACACCCTCCACTCACCTGTAACTGCTC---CCT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30957988 86 +  31380117 AACAAGTGCTGAAAGAGAGGGAAAGAAATATTCTCTAAACAACAGGAG-CAGGTACCATCCAGCCCACTCACCTGCAGTTGTTC---CCG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5830565 83 -  61074082 AAGGGGTGCTGAAGAGAGGGGATGGAAGCATTTCCTGG-GGGCAGGAG-GGAGATCCCAGC--TCCACACACCTGCAGCTGCTC---CCT
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958             409567 313 -    584178 M
e cebCap1.NW_016107745v1      1012398  0 -   1842816 C
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=39637.000000
s hg38.chr15_KI270851v1_alt     78399 15 +    263054 ttc---agctttctgttt
s panTro5.chr15               9311473 15 +  83230942 TTT---GGCTTTCTGTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73914823 18 -  99763055 CCTTAGGGCTTCCTGATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        17848 15 -    281578 TTC---GGCTTTCTGTCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990591 15 + 121039945 TTC---AGCTCTCTGTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231595 15 + 169600520 TTC---GGCTTTCTGTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295381 15 - 171882078 TTC---GGCTTTCTGTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       363057 15 +   2379783 TAG---GGCTTCCTGATG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1469317 15 +   1584492 TTC---AGTTTTCTGTTT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7515888 15 +  58131712 TAG---GGCTTCCTGATG
i chlSab2.chr26             I 6079 C 0
s colAng1.NW_012115677v1      3041648 15 +   3749464 TTC---AGCTTTCTGTCT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72431089  3 - 132174527 TTG---------------
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9395124 15 +  14477005 TAG---GGCTCCCTGCTT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30958074 15 +  31380117 TAG---GGCCCCCTGCTC
i otoGar3.GL873533          C 0 I 12
s canFam3.chr9                5830648 15 -  61074082 TAG---AGACCCCTGCTC
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958             409567 313 -    584178 M
e cebCap1.NW_016107745v1      1012398  0 -   1842816 C
e manLeu1.NW_012102332v1       382157 15 -   3636681 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=1295760.000000
s hg38.chr15_KI270851v1_alt     78414 175 +    263054 ------------ctcgttgtttgctttcttttcctgtAGGAAGAGGAAGACAGAGATCTA-ACCAGGCGGAGGCAGAGATGGTACTGCAAGAGACATGTCCCCAGA--ATGCCACCACTGCCCCTGCCCCGGGACAGGCCCACCCATGGGACCGGGTT---------------------------------ATCAGGGACCCTGTGGGGG---ATGGGGTGGACTC
s panTro5.chr15               9311488 168 +  83230942 ------------CTCGTTGTTTGCTTTCTTTTCCTGTAGGAAGAGGAAGACAGAGCTCTT-ACCAGGGGGAGGCAGAGATGGCACAGCAAGAGACGTGCCCCCAGA--ATGCCACCAATGCCCC------AGGACAGGCCCACCCATGGGACCGGGTC---------------------------------ATCAGGGATCCTGTGGGG----ATGGGGTGGACTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73914841 168 -  99763055 ------------TTGGTGGCTTGCCTTCTGTTCCTATAGAAAGAGGAAAACAGAGCTCTT-GCTAGGGGGAGGCAGAGATGGCACAGCAAGAGACATGCCCCCAGA--ATGGCACCACTGCCCC------AGAACAGGCCCACCCATGGGACCAGTTT---------------------------------ATCAGGGACCCTGTGGGG----ATGGGGTGGAATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        17863 167 -    281578 ------------TT-GTTGTTTGCTTTCTTTTCCTGTAGGAAGAGGAAGACAGAGCTCAT-ACCAGGGGGAGGCAGAGATGGCACAGCAAGAGACATGCCCCCAGA--ATGCCACCAATGCCCC------AGGACAGGCCCACCCATGGGACCAGGTT---------------------------------ATCAGGGGCCCTGTGGGG----ATGGGGTGGAATC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990606 168 + 121039945 ------------TTTGCTGTTTGCTTTCTTTTCCTATAGGAAGAGGAAGACAGAGCTCTT-ACCAGGGGGAGGCAGAGACGGCACAGCAAGAGACATGCCTCCAAA--ATGCCACCAATGCCCC------AGGACAGGCCCACCCATGGGACCAGGTT---------------------------------ATGAGAGGCCCTGTGGGG----ATGGGGTGGAATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231610 168 + 169600520 ------------CTCATTGTTTGCCTTCTTTTCCTATAGGAAGAGGAAGACAGAGCTCTT-ACCAGGGGGAGGCAGAGGTGGCACAGCAAGAGACATGCCCCCAGA--ATGCCACCAATGCCCC------AGGACAGGCCCACCCATGGGACCAGGTT---------------------------------ATCAGGGACCCTGTGGGG----ATGGGGTGGAATC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295396 168 - 171882078 ------------CTCATTGTTTGCCTTCTTTTCCTATAGGAAGAGGAAGACAGAGCTCTT-ACCAGGGGGAGGCAGAGATGGCACAGCAAGAGACATGCCCCCAGA--ATGCCACCAATGCCCC------AGGACAGGCCCACCCATGGGACCAGGTT---------------------------------ATCAGGGACCCTGTGGGG----ATGGGGTGGAATC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       363072 168 +   2379783 ------------TTGGTGGCCTGCCGCCTTTTCCTATAGGAAGAGGAAGACAGAGCTCTT-ACTAGGGGGAGGCAGAGATGGCACAGCAAGAGACATGCCCCCAGA--ATGGCACCACTGCCCC------AGGACAGGCCCACCCATGGGGCCAGGTT---------------------------------ATCAGGGACCCTGTGGGG----ATGGGGTGGAATG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1469332 168 +   1584492 ------------CTCATTGTTTGCCTTCTTTTCCTATAGGAAGAGGAAGACAGAGCTCTT-ACCAGGGGGAGGCAGAGATGGCACAGCAAGAGACATGCCCCCAGA--AAGCCACCAATGCCCC------AGGACAGGCCCACCCATGGGACCAGGTT---------------------------------ATCAGGGACCCTGTGGGG----ATGGGGTGGAATC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7515903 166 +  58131712 ------------TTGGTGGCTTGCCTTCTTTTCCTATAGAAAGAGGAAGACAGAGCTGTT-ACTAGGGGGAGGCAGAGATGGCACAGCAAGAG--ATGCCCCCAGA--ATGGCACCACTGCCCC------AGGACAGGCCCACCCATGGGACCAGGTT---------------------------------ATCAGGGACCCTGTGTGG----ATGGGGTGGGATC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       382172 166 -   3636681 ------------ATGGTGGCTTGCCGCCTTTTCCTATAGGAAGAGGAAGACAGAGCTCTT-ACTAGGGGAAGGCAGAGATGGCACAGCAAGAG--ATGCTCCCAGA--ACGGCACCACTGCCCC------AGGACAGGCCCATCCACGGGGCCAGGTT---------------------------------ATCAGGGACCCTGTGGGG----ATGGGGTGGAATC
i manLeu1.NW_012102332v1    I 15 C 0
s colAng1.NW_012115677v1      3041663 167 +   3749464 ------------CTCATTGTTTGCCTTCTTTTCCTATAGGAAGAGGAAGACAGAGCTCTT-ACCAGGGGGAGGCAGAGATGGCACAGCAAGAGACATGC-CCCAGA--ATGTCATCAATGCCCC------AGGACAGGCCCACCCATGGCATCAGGTT---------------------------------ATCAGGGACCCTGTGGGG----GTGGGGTGGAATG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72431092 156 - 132174527 -------------------CAT--TTTCCTTTCCTATAGGAAGAGGAAGACAGAGCTCTT-AGCAGGGGGAGGCAGAGATGGCA---TAAGAGACATGCCCCAGGA--ATGCCATTAATGCCCC------AGGACAGATCCACCCATGAGACCAGTTT---------------------------------ATCAGGGACCCTGTGGGG----ATGGGGTGGAATC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9395139 168 +  14477005 ------------TTGGTGACATTCTTTCTTTTCCTACAAGAAGAGGAAGACAGAGCTCTT-ACTAGGGGAAGGCAGAGATGGCACAGCAAGGGACATGCCCCTAGA--ATGCCACCAATGCCCC------AGGACAGGCCCACCCATGGGATCAAGTT---------------------------------ATCAGGGACCCTGTGGGG----ATGGGGTGGAATC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30958101 147 +  31380117 ------------TTGTTGATGTTCTTTTCTCTCCTAGAGGAAAA--------------------------AGACAGAGATGGAACAGCTGAGGATATGCCCCCAGT--ATACCACCAATGCCCC------AAGGCAGACCCACCCAGGAGAGCAGATT---------------------------------ATCAGGGACCGTGCAGGGGAATGGGGGGTGGGACC
i otoGar3.GL873533          I 12 C 0
s canFam3.chr9                5830663 216 -  61074082 CTTTGCAAGCTTCTGTTCAAACTCCTTCTTCTCCTGCAGGAAGGAGGACACAACATCCTTGACTGGAAGGGGGCAGAGATGAAACAGCAAAGGACGTGATCCCAAAATATGCCATCAGTGGAGC------AGGATAGGCCCAACAATGTGGCCAGACTgggggggaggggggcgtggtggcaggtagtgggaggagggcaggggtaggg----aaggggtgggggA
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958             409567 313 -    584178 M
e cebCap1.NW_016107745v1      1012398   0 -   1842816 C
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=961847.000000
s hg38.chr15_KI270851v1_alt     78589 132 +    263054 TGGGGGGTG-----AGCCTT---CTTCCCCAGGCTGGGAGTGGGT-GAGACGAGACTCGGGGCCTCTACATCTGAGTGTCCCCC--AAACCGAGCAGTCATGTCGC-GAGCAAAC-AAAGAAATCATGTTACTTCTTCCAGCTGA
s panTro5.chr15               9311656 132 +  83230942 TGGGGGGTG-----AGCCTT---CTTCCCCAGGCTGGGAGTGGGT-GAGATGAGACTCGGGGCCTCTACATCTGAGTGTCCCCC--AAACCGAGCAGTCATGTCAC-GATCAAAT-AAAGAAATCATGTTACTTCTTCCAGCTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73915009 126 -  99763055 TTGGGGGTG-----AGCCTT---CTTCCCCAGTCTGGGAGTGGGT-GAGATGAGCCT-GGGGTCTCTACATCTGAGTG-CCCCC--AAACCCAGCGGTCATGTCGT-GAGC-----AAAGAAATCACATTACTTCTTCCAGCTGA
i panPan2.chr15             C 0 I 5
s gorGor5.CYUI01000141v1        18030 128 -    281578 TGAGGGGTG-----AGGCTT---CTTCCCCAGGCTGGGAGTGGGT-GAGACGAGACT-GGGGCCTCTATGTCTGAGTGCCCCCC--AAACCCAGCAGTCATGTCGC-GAGGA----AACGAAATCACGTTACTTCTTCCAGCTGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990774 130 + 121039945 TGGAGGGTG-----AGCCTT---CTTCCCCAGGCTGGGAGTGGGT-GA-ACGAGACT-GGGGCCTCTATGTCTGACTGCTCCCC--AAACCCAGCAGTCGTGTCGC-GAGGAAAC-AAAGAAATCACGTTACTTCTTCCAGCTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231778 131 + 169600520 TGAGGGGTG-----AGCCTT---CTTCCCCAGGCTGGGAGTGGAC-GAGATGAGACT-GGGGCCTCTACATCTGAGTGCCCCCC--AAACCCAGCCGTCATGTCGC-GAGGAAAA-AAAGAAATCACATTACTTCTTCCAGCTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295564 127 - 171882078 TGAGGGGTG-----AGCCTT---CTTCCCCAGGCTGGGAGTGGGC-GAGATGAGACT-GGGGCCTCTACGTCTGAGTGCCCCCC--AAACCCAGCAGTCATGT-----CGCGAGC-AAACAAATCACATTACTTCTTCCAGCTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       363240 128 +   2379783 TGGGGGGTG-----AGCCTT---CATCCCCAGTCTGGGAGTGGGC-CAGGCGAGACT-GGGGCCTCTACATCTGAGTGCCCCCC--AAACCCAGCAGTCATGT----GAGCAAAC-AAAGAAATCACGTTACTACTTCCAGCTGG
i macNem1.NW_012011934v1    C 0 I 6
s cerAty1.NW_012002601v1      1469500 126 +   1584492 TGAGGGGTG-----AGCCTT---CTTCCCCAGGCTGGGAGTGGGC------GAGACT-GGGGCCTCTACATCTGAGTGCCCCCC--AAACCCAGCAGTCATGTCGC-GAGGAAAC-AAAGAAATCACATTACTTCTTCCAGCTGA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7516069 128 +  58131712 CGGGGGGTG-----TGTCTT---CTTCCCCAGGCTGGGAGTGGGC-AAGATGAGACT-GGGGCCTCTACCGCTGAGTTCCCTCC--AAACCCAGCAGTCATGT----GAGCAAAC-AAAGAAATCACGTTACTTCTTCCAGCTGG
i chlSab2.chr26             C 0 I 6
s manLeu1.NW_012102332v1       382338 124 -   3636681 TGGGGGGTG-----AG---C---CTTCCCCAGTCTGGGAGTGGGC-CAGGCGAGACT-GGGGCCTCTACATCTGAGTGCCCCCC--AAACCCAGCAATCATGT----T-GTGAGC-AAACAAATCATGTTACTTCTTCCAGCTGA
i manLeu1.NW_012102332v1    C 0 I 6
s colAng1.NW_012115677v1      3041830 130 +   3749464 TGAGGGGTG-----AGCCTT---CTTCCACAGGCTGGGAGTGGGC-GAGACGTGACT-GAGGCCTCTACATCTGAGTGCCC-CC--AAACCCAGCGGTCATGTCGC-GAGGAAAC-AAAGAAATCACATTACTTCTTCCAGCTGA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72431248 127 - 132174527 TGAGGGGCA-----AGCCTT---CTTCCCCAGGCTGGGAGTGGGT-GAGATGAGACT-GGCATCTCTACATCTGAGTGCCCCCC--AAACCCCACAGTCATGTCAC-GGGCAAAC-----AAATCACGTTACTTCTCTCAGCTGT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9395307 136 +  14477005 TGGGGGGCATGGTGAGCCTT---CTTCCCCAGGCTGGGAGTGGGT-GAGATGAGACT-GAGGCCTCTTCATTTGAATGCCCCCC--AAACCCAGCAGACATGTTGT-GAGCAAAC-AAAGAAATCACGTTACTTCTTCCAACTGA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30958248  90 +  31380117 CAGGATATG-----AG-----------TCCAGGCTGGGA-------------AACCT----------------------CCCCC--AAACCCATCAACTACATCAT-AAGCAAAC-AAAGAAATCACATTACTTTTTCTAGCTGA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5830879 134 -  61074082 CACAAGGGG-----GCCTTT-TATTCCTCCAGGCTGGGAGCAGACCAAGATGAGAAT--GGGCCTCTACATCTGAATCCTCCCC--AAACGCCTCTGCCACATAAT-CAGCAGACAAAAGATATCATGTTACTTTTTCCAGTTGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             409881 134 -    584178 TAGGATGCG-----GGCCCTTTGTTTCTCCAGACTGGGAGTGGGA-AAGAC---ACT-GGGGCCTCTATGTCTGAATCCTCCCCCAAAACCTATCAGCCATGTAGAGGAACAAAC-AAGGAAACCACATTACTTTCTCCAGTTGA
i dasNov3.JH564958          M 313 C 0
e cebCap1.NW_016107745v1      1012398   0 -   1842816 C
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=32138.000000
s hg38.chr15_KI270851v1_alt     78721 14 +    263054 TGTTCCACTTGTTT--
s panTro5.chr15               9311788 14 +  83230942 TGTTCCACTTGTTT--
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        18158 14 -    281578 TGTTCCACTTGTTT--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990904 14 + 121039945 TATTCCACTTGTTT--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231909 14 + 169600520 TGTTCCACTTGTTT--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295691 14 - 171882078 TGTTCCACTTGTTT--
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1469626 14 +   1584492 TGTTCCACTTGTTT--
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3041960 14 +   3749464 TGTTCCACTTGTTT--
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72431375 14 - 132174527 TGTTCCAGGCCTTC--
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9395443 14 +  14477005 TCCGTAATTTCTTG--
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30958338 11 +  31380117 ---TCCATAAGTTC--
i otoGar3.GL873533          C 0 I 6
s canFam3.chr9                5831013 11 -  61074082 ---TCCAGAGTTTC--
i canFam3.chr9              C 0 I 4
s dasNov3.JH564958             410015 14 -    584178 --TCCAAAACATCTTG
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1012398  0 -   1842816 C
e panPan2.chr15              73915135  5 -  99763055 I
e manLeu1.NW_012102332v1       382462  6 -   3636681 I
e macNem1.NW_012011934v1       363368  6 +   2379783 I
e chlSab2.chr26               7516197  6 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=1562.000000
s hg38.chr15_KI270851v1_alt     78735 1 +    263054 C
s panTro5.chr15               9311802 1 +  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73915140 1 -  99763055 G
i panPan2.chr15             I 5 C 0
s gorGor5.CYUI01000141v1        18172 1 -    281578 C
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990918 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231923 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295705 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1469640 1 +   1584492 C
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3041974 1 +   3749464 C
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72431389 1 - 132174527 C
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9395457 1 +  14477005 G
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30958355 1 +  31380117 C
i otoGar3.GL873533          I 6 C 0
s dasNov3.JH564958             410029 1 -    584178 T
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9                5831024 4 -  61074082 I
e cebCap1.NW_016107745v1      1012398 0 -   1842816 C
e manLeu1.NW_012102332v1       382462 6 -   3636681 I
e macNem1.NW_012011934v1       363368 6 +   2379783 I
e chlSab2.chr26               7516197 6 +  58131712 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=860823.000000
s hg38.chr15_KI270851v1_alt     78736 106 +    263054 TTCTGTTGTTTCTGTGGGGAGAGTCACATTAAGGTGATGGAGGGTGGCCCCCTCAACTCTATTCCCCAGAGCAGGA---A----GTGGTAGGCAGGGACCAGGAATGGATTTT
s panTro5.chr15               9311803 104 +  83230942 TTCTGTTGTTTCTGTGGG-AGAGTCAAAT-AAGGTGATGGAGGGTGGCCCCCTCAACTCTATTTCCCAGACCAGGA---A----GCGGTAGGCAGGGGCCAGGAATGGATTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73915141 106 -  99763055 TTCTGTTGTTTCTGTGGGGAGAGTCAAAGGAAGGTGACTGAGGGTGGCTCCCTTGACTCTATTCCCCAGGCCAGGA---A----GCGATAGGCAGGGGCCAGGAATGGATTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        18173 105 -    281578 TTCTGTTGTTTCTGTGGGGAGAGTCAAAT-AAGGTGATGGAGGGTGGCCCCCTCAACTCTATTCCCCAGACCAGGA---A----GCGGTAGGCAGGGGCCAGGAATGGATTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75990919  85 + 121039945 TTCTGTTGCTTCTGTGGGGAGAGTCACATTAAGGTGACTGAGGGTGGCCCCCTCAATTCTATTCCCCA----------------------------GGCCAGGAATGGATTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8231924 105 + 169600520 TTCTGTTGTTCCTGTGGGGAGAGTCAAATTAAGGTGATGGAGGGTGG-CCCCTCAACTCTATTCTCCAGACCAGGA---A----GTGGTAGGCAGGGGCCAGGAATGGATTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295706 101 - 171882078 TTCTGTTGTTTCTGTGGGGAGAGTCAAATTAAGG----TGAGGGTGG-CCCCTCAACTCTATTCCCCAGGCCAGGA---A----GCGGTAGGCAGGGGCCAGGAATGGATTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       363374 106 +   2379783 TTCTGTTGTTTCTGTGGGGAGAGTCGAAGGGAGGTGACTGAGGGTGGCCCCCTCGACTCTATTCCTCAAGTCAGGA---A----GCGGTAGCCAGGGGCCAGGGATGGATTTT
i macNem1.NW_012011934v1    I 6 C 0
s cerAty1.NW_012002601v1      1469641 105 +   1584492 TTCTGTCGTTCCTGTGGGGAGAGTCAAATTAAGGTGAGGGAGGGTGG-CCCCTCAACTCTATTCTCCAGACCAGGA---A----GCGGTAGGCAGGGGCCAGGAATGGATTTT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7516203 106 +  58131712 TTCTGTTGTTTCTGTGGGGAGAGTCAAAGGAAGGTGACTGAGGGTGGCCCCTTCAACTCTATTCCCCAGGCCAGGA---A----GCGGTAGGCAGGGGCCAGGGATGGATTTT
i chlSab2.chr26             I 6 C 0
s manLeu1.NW_012102332v1       382468 106 -   3636681 TTCGGTTGTTTCTGTGGGGAGAGTCGAAGGGAGGTGACTGAGGGTGGCCCCCTCGACTCTATTCCTCAAGTCAGGA---A----GCGGTAGGCAGGGGCCAGGGATGGATTTT
i manLeu1.NW_012102332v1    I 6 C 0
s colAng1.NW_012115677v1      3041975 106 +   3749464 TTCTCTTGTTTCTGTGGGGAGAGTCAAATGAAGGTGAGGGAGGGCTGCCCCCTCAACTCTATTCCCCAGGCCAGGA---A----GCAGTAGGCAGGGGCCAGGAATGGATTTT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72431390  98 - 132174527 TTCTGCTGTTTCTGT--GGAGAGTCAAG-----GTGACTGAGGGTGG-CCCCTCAACTCTATTCTCCACACCAGGA---A----GTGATAGACAGGGGCCAGGAATGGGTTTT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9395458 106 +  14477005 TTCTGTTGTTTCTGTGGGGAGAGTCAAAGGAATGTGACTGAAGGTGGCCCCCTCAACTCTACTCCCCAGACCAGGA---A----GGGGTAGGCAGGGGCCAGGAATGGATTTT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30958356 101 +  31380117 TTCTCTTGC-----TGTAGAGAGTCAAAGGCACATGACTCAGAGTGTCCCCCTCAACTTTATTCCCCACATAAAGA---A----GGGGTAAGCCAGGACCAGGAATGGATTTT
i otoGar3.GL873533          C 0 I 328
s canFam3.chr9                5831028 109 -  61074082 TTCTGTTGTTTCTGTGGGGAGAGCCAAAGAGAGGTAACTCGGTCTATTCCCTTTCACTGCCCTCTGCACACCAAGACTGA----GGGATGGGCAGGGGCCAGGAATGGGTTTC
i canFam3.chr9              I 4 I 1
s dasNov3.JH564958             410030 109 -    584178 TTCTCCTGTTTCTGTAGAGAGAGCCAAAGCAAGGTATCTGAGGTTGTCTTCCTTTACAACATTC-CCAGACCAAGA---AAGAGGAGGCAGGTAGGGGCCAGGAAGGGATTTT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1012398   0 -   1842816 C
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=169203.000000
s hg38.chr15_KI270851v1_alt     78842 23 +    263054 AAAGGCAAAGTTCTCAGACCCAG
s panTro5.chr15               9311907 23 +  83230942 AAAGGCAAAGTTCTCAGACCTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73915247 23 -  99763055 AAAGGCACAGTTCTCAGACCCAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        18278 23 -    281578 AAAGGCAAAGTTCTCAGACATAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75991004 23 + 121039945 AAAGGCAAAGTTCTCAGACATAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8232029 23 + 169600520 AAAGGCAAAGTTCTCAGACCCAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295807 23 - 171882078 AAAGGCAAAGTTCTCAGACCCAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       363480 23 +   2379783 AAATGCAAAGTTATCAGACCCAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1469746 23 +   1584492 AAAGGCAAAGTTCTCAGACCCAA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7516309 21 +  58131712 AAAGGT--AGTTCTCAGGCCCAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       382574 23 -   3636681 AAATGCAAAGTTATCAGACCCAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115677v1      3042081 23 +   3749464 AAAGGCAAAGTTCTCAGACATAA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72431488 23 - 132174527 GAAGGCACATTTCTCAGACCCAA
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9395564 23 +  14477005 AAAGGCAAAGTTCTCAGACCCAA
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9                5831138 14 -  61074082 AAGGGGAAACTTCA---------
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             410139 23 -    584178 AAAGGAAAAGTTCTCAGATCCCA
i dasNov3.JH564958          C 0 C 0
e otoGar3.GL873533           30958457 328 +  31380117 I
e cebCap1.NW_016107745v1      1012398  0 -   1842816 C
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=229579.000000
s hg38.chr15_KI270851v1_alt     78865 25 +    263054 TGGGAACACGAACTGGT-AAACTCTC
s panTro5.chr15               9311930 25 +  83230942 TGGGAACACGAACCGGT-AAACTCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73915270 25 -  99763055 TGGGAACATGAACTGGT-CAACTCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        18301 24 -    281578 TGGGAACACAAACTGGT-AAACTCT-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75991027 25 + 121039945 TGGGAACATGAATTGGT-AAACTCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8232052 25 + 169600520 TGGGAACACGAACTGGT-AAACCCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295830 25 - 171882078 TGGGAACACGAACTGGT-AAACCCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       363503 25 +   2379783 TGGGAACACGAACTGGC-CAACTCTC
i macNem1.NW_012011934v1    C 0 I 21
s cerAty1.NW_012002601v1      1469769 25 +   1584492 CGGGAACACGAACTGGT-CAACTCTC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7516330 25 +  58131712 TGGGAACACGAACTGGT-AAACTCTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       382597 25 -   3636681 TGGGAACACGAACTGGT-CAACTCTC
i manLeu1.NW_012102332v1    C 0 I 18
s colAng1.NW_012115677v1      3042104 25 +   3749464 TGGGAACACGAACTGGT-AAACTCTC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72431511 25 - 132174527 TGGGAACACAAACTGGT-CAACTCTC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1      9395587 25 +  14477005 TGGGAACACGAGCTGGT-AAACTCTC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30958785 26 +  31380117 TGGGGACTTGAAGTGACAAAACTTTC
i otoGar3.GL873533          I 328 C 0
s canFam3.chr9                5831152 25 -  61074082 TGTGGACACGAACTGAT-AGAGTCTC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             410162 25 -    584178 TGGAGATTTGAATTGAC-AAACTCTT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1012398  0 -   1842816 C
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=141597.000000
s hg38.chr15_KI270851v1_alt     78890 20 +    263054 CTCAAGCTCCCAAGGACAGA
s panTro5.chr15               9311955 20 +  83230942 CTCAAGCTCCCAAGGACAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73915295 19 -  99763055 CTCAA-CTCCCAAAGAAGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        18325 20 -    281578 CTCAAGCTCCCAAGGACAGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75991052 20 + 121039945 CTCAAGCTCCCAAGGACAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8232077 20 + 169600520 CTCAAGCTTCCAAGGACAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295855 20 - 171882078 CTCAAGCACCCAAGGACAGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1469794 20 +   1584492 CTCAAGCTCCCAAGGACAGA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7516355 19 +  58131712 CTCAA-CTCCCAAAGTAAAA
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3042129 20 +   3749464 CTCAAGCTCCCAAGGACAGA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10              72431536 20 - 132174527 CTGAAGCTTCCaaggacaga
i calJac3.chr10             C 0 N 0
s aotNan1.NW_018502759v1      9395612 20 +  14477005 CTCAGGCTCCCAAGGAAAAG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30958811 20 +  31380117 CTCAAACTCCCAAGGTCAGA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5831177 20 -  61074082 CTCAAGCTCCCAAGAAAAGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             410187 20 -    584178 CTCAAGTTCCCAAGAAAAGA
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1012398  0 -   1842816 C
e manLeu1.NW_012102332v1       382622 18 -   3636681 I
e macNem1.NW_012011934v1       363528 21 +   2379783 I
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=397804.000000
s hg38.chr15_KI270851v1_alt     78910 50 +    263054 GGATTTGGGTCTTTGTTGGCTTTTGTCCACAGCCACAGAACTCAAGGTCT
s panTro5.chr15               9311975 50 +  83230942 GGATTTGGGTCTTTGTTGGCTTTTGCCCACAGCCACAGAACTCAAAGTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73915314 49 -  99763055 GGATTTGGGTCTTT-TTGGTTTTTGCCCACAGCCACAGAACTCAAAGTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        18345 50 -    281578 GGATTTGGGTCTTTGTTGGCTTTTGCCCACAGCCACAGAACTCAAAGTCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75991072 50 + 121039945 GGATTTGGGTCTTTGTTGGTTTTTGCCCACAGCCACAGAACTCAAAGTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8232097 50 + 169600520 GGATTTGGGTCTTTGTCGGCTTTCGCCCACAGCCACAGAACTCAAAGTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170295875 50 - 171882078 GGATTCCGGTCTTTGTTGGTTTTCACCCACAGCCACAGATCTCAAAGTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       363549 50 +   2379783 GGATTTGGGTCTTTGTTGGTTTTTGCCCACAGCCACAGAACTGAAAGGCT
i macNem1.NW_012011934v1    I 21 C 0
s cerAty1.NW_012002601v1      1469814 50 +   1584492 GGATTTGGGTCTTTGTTGGTTTTCACCCACAGCCACAGAACTCAAAGTCT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7516374 50 +  58131712 GGACTTGGGTCTTTGTTGGTTTTTGGCCACAGCCACAGAACTCAAAGTCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       382640 50 -   3636681 GGATTTGGGTCTTTGTTGGTTTTTGCCCACAGCCACAGAACTGAAAGGCT
i manLeu1.NW_012102332v1    I 18 C 0
s colAng1.NW_012115677v1      3042149 50 +   3749464 GGATTTGGGTCTTTGTTGGTTTTCACTCACAGCCACAGAACTCAAAGTCT
i colAng1.NW_012115677v1    C 0 C 0
s aotNan1.NW_018502759v1      9395632 48 +  14477005 AGATTTGGGTCTTTGTTGGTTTTTGCCCACAGCCACAGAACT--GGGTCT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30958831 50 +  31380117 GAATTTGTGTCTTTGGTGGTCTTTGCTTATGGCTATAAAGCTGTAAGCCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5831197 46 -  61074082 --CTTTGGGTCTTGGGTAG-TTTTGCTCACAGCTACACAGATGAGAGTC-
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             410207 50 -    584178 GAACTTGGGTCTTCCTTGGTTTGTACTCCCAGCGATGGAACTGAAAGTCT
i dasNov3.JH564958          C 0 I 1
e cebCap1.NW_016107745v1      1012398  0 -   1842816 C
e saiBol1.JH378108           49808269 3184 +  54856640 M

a score=641608.000000
s hg38.chr15_KI270851v1_alt     78960  87 +    263054 GAATCTGGAATCTCTTGACAGGACAGTAACATAAACCTCTA---------------------------------------------------GAGATGGAGTTTGAG----AAAGGCCCCCCCTTCTGCCAG----CTTGTGATTT
s panTro5.chr15               9312025  87 +  83230942 GAATCTGGAATCTCTTGAGAGGACAGTAACATAAACCTCTA---------------------------------------------------GAGATGGAGTTTGAG----AAAGGCCCCTCCTTCTGGCAG----CTTGTGATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73915363  87 -  99763055 GAAACTAGATTCTCTTGAAAAGACAGTAAGAGAAACCTTCA---------------------------------------------------GAGGTGGAGTGTGAG----AAAAGCCCACCCTTCTGCCAG----CTTGTGATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        18395  87 -    281578 GAATCTGGAATCTCTTGAGAGGACAGCAACATAAACCTCTA---------------------------------------------------GAGATGGAGTTTCAG----AAAGGCCCCTCCTTCTGGCAG----CTTGTGATTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75991122  87 + 121039945 GAATCAGGACTCTCTTGAGAGGACAGTAACATAAACCCCTA---------------------------------------------------GAGATGGAGTTTGAG----AAAGGCCCCTCCTTCTGGCAG----CTTGTGATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8232147  86 + 169600520 GAATGTGGAAACTCTTGAGAGGACAGGAACACAATCCTCTA---------------------------------------------------GAGATGGAGTTGGAG----AAAGGCCC-CCCTCCTGCCCG----TTTGTGATTT
i rheMac8.chr7              C 0 I 305
s macFas5.chr7              170295925  86 - 171882078 GAATCTGGAATCTCTTGAGAGGACAGGAACATAAACCTCTA---------------------------------------------------GAGATGGAGTTTGAG----AAAGGCCC-CCCTTCCGCCTG----CTTGTGATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       363599  87 +   2379783 GAAACTAGATTCTCTGGAAAAGACACTAACATAAACCTTCA---------------------------------------------------GAGATGGAGTGTGAG----AAAAGCCCACCCTTCTGCCAG----CTTGTGATTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1469864  86 +   1584492 GAATGTGGAATCTCTTGAGGGGACAGGAACACAATCCTCTA---------------------------------------------------GAGATGGAGTTGGAG----AAAGGCCC-CCCTTCTGCCCG----CTTGTGATTT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7516424  87 +  58131712 GAAACTAGATTCTCTCAAAAAGACAGTCACAGAAACCTTCA---------------------------------------------------GAGATGGAGTGTGAG----AAGAGCCCACCCTTCTGCCAG----CTTGTGATTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       382690  87 -   3636681 GAAACTAGATTCTCTGGAAAAGACACTAACATAAACCTTCA---------------------------------------------------GAGATGGAGTGTGAG----AAAAGCCCACCCTTCTGCCAG----CTTGTGATTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115677v1      3042199  87 +   3749464 GAATGTGCAATCTCTTGAGAGGACAGTAACATAAACCTCTA---------------------------------------------------GAGATGGAGTTTGAG----AAAGGCCCCCCCTTCTGCCCG----CTTGTGATTT
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49811454  86 +  54856640 GAATCTGAATTCTCTCGAAAGGACAGTAACATCAACCTCTA---------------------------------------------------GGGATGAAGTTTGAG----AAAGGGCC-CCCTTGTGTCAG----CTTGTGATTT
i saiBol1.JH378108          M 3184 C 0
s aotNan1.NW_018502759v1      9395680  86 +  14477005 GGATCTG-ATTCTCTTGAAAGGACAGTAACATAAACCTCGA---------------------------------------------------GAGATGAAGTGTGAG----AAAAGCCCACCCTTCTGCCAG----CTTGTGATTT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30958881 128 +  31380117 GGATCTG--------------GATAGTAATATAAACCTCTAGATGGTATCCCATCCTGTCCTCTAGGGAACATTTCTTTCCCTCTCATTCTTGAAATAGAGTTTGAGGAAAGAAAGACTACCCTTCTGCCAG----CTTGTGATTT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5831243  78 -  61074082 -----------CTTGTGAAAGGACAGGG--ATAAACCTCCA---------------------------------------------------GAAACAGGAGTTGAGAAGCAAGAGACTACCCTTCTGGTAG----CTCGTGATTT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             410258  95 -    584178 GAACCTGGAATCCTTCTAAAGGACAATAATATAAACCTCTA---------------------------------------------------GAAACGGAGTCTGAAAAGGGAAAGACAACCCACCTGCCAGCTCACTCACGATTT
i dasNov3.JH564958          I 1 C 0
e cebCap1.NW_016107745v1      1012398   0 -   1842816 C

a score=546505.000000
s hg38.chr15_KI270851v1_alt     79047 66 +    263054 AGAAAAGTGcattcattcaataaacatttactgagcacg---------------tacgggccaagtacggttctTCACAGC
s panTro5.chr15               9312112 66 +  83230942 AGAAAAGTGGGttcattcaataaacatttactgagcacg---------------tacgggccaagtatggttcttcacagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73915450 62 -  99763055 AGAAAGGTGcattcattcagcaaacgt----tgagcaca---------------tacgggccagggacgcttcttcacagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        18482 66 -    281578 AGAAAAGTGGGttcattcaataaacacttactgagcacg---------------tatggaccaggtacggttcttcacagc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75991209 66 + 121039945 AGAAAAGTGcgttcattcagtaaacatttactgagcacg---------------tacgggccaggtacggttcttcacagc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8232538 66 + 169600520 agaaaaGTGcgttcattcaataaacatttactgcgcatg---------------aatgggccaggtacggttcttcacagc
i rheMac8.chr7              I 305 C 0
s macFas5.chr7              170296011 66 - 171882078 AGAAAAGTGcgttcattccataaacatttactgagcacg---------------aacgggccaggtacggttcttcacagc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       363686 65 +   2379783 AGAAAGGTGcattcattcagcaaacattgacc-agcaca---------------tacaggccagggacggttcttcacagc
i macNem1.NW_012011934v1    C 0 I 24
s cerAty1.NW_012002601v1      1469950 66 +   1584492 AGAAAAGTGcgttcattcaataaacattgactgagcacg---------------tacgggccaggtacggctcttcacagc
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7516511 66 +  58131712 AGAAAGGTGcattcattcaacaaacattgagtgagcaca---------------tacgggccagggacggttcttcacagc
i chlSab2.chr26             C 0 I 2
s manLeu1.NW_012102332v1       382777 66 -   3636681 AGAAAGGTGcattcattcagcaaacattgaccaagcaca---------------tacaggccagggacggttcttcacagc
i manLeu1.NW_012102332v1    C 0 I 2
s colAng1.NW_012115677v1      3042286 66 +   3749464 AGAAAAGTGcgttcattcagtaaacatttactgagcacg---------------aatgggccaggtacggttcttcacagc
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49811540 64 +  54856640 AGAAAACTG--ttcattccataaatatttacggagcaga---------------tatgggccaggtatggttcttcacagc
i saiBol1.JH378108          C 0 I 2
s aotNan1.NW_018502759v1      9395766 66 +  14477005 AGAAAGGTGcattcattcaacaaacatttgctgagaata---------------tacgggccaggtacagttcttaatagc
i aotNan1.NW_018502759v1    C 0 I 2
s otoGar3.GL873533           30959009 69 +  31380117 AGGAGGGTAcattcattcaacacatatttactgagcaca------------gactacaggcctgctactactcttaatcac
i otoGar3.GL873533          C 0 I 2
s canFam3.chr9                5831321 81 -  61074082 GGAAGGGTGCTttcattcaacaagtatttactgagcaccctgggcctaagtacccacaggccaggttctgttcttaatagc
i canFam3.chr9              C 0 I 2
s dasNov3.JH564958             410353 69 -    584178 GAAAGGGCGcattcattcagcaaagatttactgagcata------------tactatgggctgggtactattcttactagc
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1012398  0 -   1842816 C

a score=25463.000000
s hg38.chr15_KI270851v1_alt     79113 6 +    263054 --AG--ATTT
s panTro5.chr15               9312178 6 +  83230942 --ag--attt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73915512 8 -  99763055 --gggaatag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        18548 6 -    281578 --ag--atat
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75991275 6 + 121039945 --ag--acac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8232604 6 + 169600520 --ag--atat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170296077 6 - 171882078 --ag--atac
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1470016 6 +   1584492 --ag--atat
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7516579 6 +  58131712 --gg--atat
i chlSab2.chr26             I 2 C 0
s manLeu1.NW_012102332v1       382845 6 -   3636681 --gg--atat
i manLeu1.NW_012102332v1    I 2 I 16
s colAng1.NW_012115677v1      3042352 6 +   3749464 --ag--atac
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49811606 6 +  54856640 --aa--atgc
i saiBol1.JH378108          I 2 C 0
s aotNan1.NW_018502759v1      9395834 6 +  14477005 --gg--atat
i aotNan1.NW_018502759v1    I 2 C 0
s otoGar3.GL873533           30959080 6 +  31380117 --gg--acac
i otoGar3.GL873533          I 2 C 0
s canFam3.chr9                5831404 6 -  61074082 --gg--atac
i canFam3.chr9              I 2 C 0
s dasNov3.JH564958             410422 8 -    584178 aggg--acag
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1012398 0 -   1842816 C
e macNem1.NW_012011934v1       363751 24 +   2379783 I

a score=688144.000000
s hg38.chr15_KI270851v1_alt     79119 101 +    263054 agg---gcggaaaaggacagacaggagcctttggccctgaggtttccattctaggaggcctttaaatctcAGACTCTC-AGAGCTAACAGAGACCTATGATACTC
s panTro5.chr15               9312184 101 +  83230942 agg---gcggaaaaggacagacaggagcccttggccctgaggtttccattctaggaggCCTTTAaatctcagactcta-agagctaacagagacctatgatactc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73915520 100 -  99763055 agg---tcagaaaagg-cagacaggagcccttggccccgaggtttccattctagtgggCCTTTAACTCTCGGACTCTC-AGAGCTAACAGAAACCTCTGATACTC
i panPan2.chr15             C 0 I 39
s gorGor5.CYUI01000141v1        18554 100 -    281578 agg---atggaaaaggacagacaggagcccttagccctgaggtttccattctcgggggCCTTTAAATCTCAGACTC-G-AGAGCTAACAGAGACCTTTGATACTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75991281 101 + 121039945 agg---atggaaaaggacagacaggagcccttggccctgaggtttccattctCAGAGGCCTTTAaatctcaggctctc-agagctaacagagacctttgatactc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8232610 104 + 169600520 aggctaacggaaaaggacagacagcagcccttggccctgaggtttccattctagGCGGCCTTTAAATCTCGGACTCTC-AGAGCTAACAGACACCTTTGATACTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170296083 101 - 171882078 agg---atggaaaaggacagtcaggagcccttggccctgaggttcccattctagGTGGCCTTTAaatctcggactctc-agagctaacagacacctttgatactc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       363775 100 +   2379783 agg---acggaaaagg-cagacagaagctcttggcccccaggtttccattctagtgAATCTTTAAATCTCAGACTCTC-AGAGCAAACAGAAACCTGTGATACTC
i macNem1.NW_012011934v1    I 24 I 831
s cerAty1.NW_012002601v1      1470022 100 +   1584492 agg---acggaaaaggacagacagcagcgcttggccctgaggtttccgttctagGCGGCCTGTAAATCTCGGACTCTC-AGAGCTAACAGACA-CTTTGATACTC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7516585 100 +  58131712 agg---acggaaaagg-cagataggaacccttggtcccgaggtttccattctagtgggCCTTTAACTCTCGGGCTCTC-AGAGCTAACAGACAACTCTGATACTC
i chlSab2.chr26             C 0 I 39
s manLeu1.NW_012102332v1       382867 100 -   3636681 agg---acggaaaagg-cagacagaagcccttggccccgaggtttccattctagtgAATCTTTAAATCTCAGACTCTC-AGAGCAAACAGAAACCTGTGATACTC
i manLeu1.NW_012102332v1    I 16 I 956
s colAng1.NW_012115677v1      3042358  98 +   3749464 agg---acagaaaatg----acaggagcccttggccctgaggtttccattctaggggCCCTTTAAATCTCGGACTCTTAAGAGCTAACAGACACCTTTGATAGTC
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49811612  97 +  54856640 agg---acagcaaaggac----aggagcccttggccctgaggtttccattctaaggggCCTTTAAATCTCCGACCCTC-AGAGCTTACAGAGACCTCTGATACTT
i saiBol1.JH378108          C 0 I 2
s aotNan1.NW_018502759v1      9395840  99 +  14477005 aag---acagaaaaagacagataggagcccttggccctgaggtttacattctagtggCCCTTTAaatcttggactctc-agagct--aagagacctttgatactc
i aotNan1.NW_018502759v1    C 0 I 6
s otoGar3.GL873533           30959086  95 +  31380117 aga---aatgaaaaggacagata-aatccctttaccctgttgt-----ttctagtgggCCTAGAaatctttgattttc-agagctaaaagagacctttgctaatt
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5831410  50 -  61074082 agg---aatgagaaggac---------------------------------------------------CTgattctc-tgagctaaaggggaccttggacacct
i canFam3.chr9              C 0 I 5
s dasNov3.JH564958             410430  93 -    584178 agg---aatgcaaaggatagacaagatccccacattcc----ctaacattctaACAGACCTTTCAGTCTTTGCTTTTT-Agagctcaaagataccgtaatt----
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1012398   0 -   1842816 C

a score=439751.000000
s hg38.chr15_KI270851v1_alt     79220 92 +    263054 ACTACTTCCTCTggaaacacgagcccaaaaaggagaggtggcttgtccagaat-----caaa----gagcaaattagggactgagtcatggcagaaataca
s panTro5.chr15               9312285 92 +  83230942 actacctcctctggaaacacgagcccaaaaaggagaggtgacttgtccagaat-----caaa----gagcaaattagggactgagtcatggcagaaataca
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        18654 92 -    281578 ACTACCTCCTCTggaaacacgagcccaaaaaggagaggtggcttgtccagaat-----caaa----gagcaaattagggactgagtcatggcagaaatacg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75991382 92 + 121039945 actacctcctctggaaacacgagcccaaaaaggagaggtggcttgtccagaat-----cgaa----gagcaaattagggactgagtcacagcagaaataca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8232714 92 + 169600520 ACTACCTCCTCTggaaacacaaacccaaaaaggagaggtggcttgtccagaat-----caaa----gagcaaattagggactgagtcatggcagaaacaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170296184 92 - 171882078 actacctcctctggaaacacgagtccagaaaggagaggcggcttgtccagaat-----caaa----gagcaaattagggactgagccacagcagaaataca
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1470122 92 +   1584492 ACTACCTCCTCTGGAAACACGAGACCAGAAAGGAGAGGCGGCTTGTCCAGAAT-----CAAA----GAGCAAATTAGGGACTGAGTCACGGCAGAAATACG
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3042456 92 +   3749464 ACTACCTCCTCTGGAAACGCGAGCCCAAAAAGCAGAGGCAGCTTGTCCAGAAT-----CAAA----GAGCAAATTAGGGACTGAGTCACGGCAGAAATACA
i colAng1.NW_012115677v1    C 0 I 523
s saiBol1.JH378108           49811711 88 +  54856640 ----CCTCCtgtggaaacaggagcccaaggaggagaggcagcttgttcagagt-----caaa----tagcaaattagggaccgaatcacagcaggaataca
i saiBol1.JH378108          I 2 C 0
s aotNan1.NW_018502759v1      9395945 92 +  14477005 tctacctcctcaggaaatgcaagcccaaggaggagaagtggtttgtccaaaat-----caaa----gagcaaattaaggactgagtcaagatggaaatatg
i aotNan1.NW_018502759v1    I 6 C 0
s otoGar3.GL873533           30959181 71 +  31380117 -ccaccttcttaggaaactcaagccca-ggaggagagatgacttatctaaaat-----caAA----------------GACAGAG-------AAAAACATA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5831465 96 -  61074082 tctacctcctcaggagactgaagcccagagaggaaaggtgactcatccaagtt-----caaagatggagcaaattaggggttgggtcagggcaggagcaca
i canFam3.chr9              I 5 C 0
s dasNov3.JH564958             410523 96 -    584178 -ctactccttcaggcaactgaaggccagtgaagagaagtgacttgtccaaagtgaaaccaag----caacaaattaggcactaagtcagggctgagacaca
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1012398  0 -   1842816 C
e panPan2.chr15              73915620 39 -  99763055 I
e manLeu1.NW_012102332v1       382967 956 -   3636681 I
e macNem1.NW_012011934v1       363875 831 +   2379783 I
e chlSab2.chr26               7516685 39 +  58131712 I

a score=1040945.000000
s hg38.chr15_KI270851v1_alt     79312 224 +    263054 gggcccctgacaaccagtcAGGCTAGCACTTCC-CCAAGAGG-CAACAATCCCAGGGCGTGTGTAGCAAGGACTCGAGCAGGGGCGTCTGGAGAGGGGAGAGTCAGCAAACAGGGCAGCAAAAA-AAGAGCCATGCTGCATGCTCCG-------GGGTC-CCTCCAGGTGAGGCCTGGGTGC---CCCAGCTCCCTATTCGCCCTTGGCACCAGGGGCCCCTGTCCCCTTTCTTCAGG
s panTro5.chr15               9312377 224 +  83230942 gggcccctgacaaccagtcAGGCTAGTACTTCC-CCAAGAGG-CAACAACCCCAGGGCGTGTGTAGCAAGGACTCGAGCAGGGGCGTCTGGAGAGGAGAGAGTCGGCAAAGTGGGCAGCAAAAG-CAGAGCCAGGCTGCATGCTCCG-------GGGTC-CCTCCAGGTGAGACCCGGGCGC---CCCAGCTCCCTATTTACCCTTGGCACCAGGGGCCCCCAGCCCCTTTCTTCAGG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        18746 221 -    281578 gggcccttgacaaccagtcAGGCTAGCACTTCC-CCAGGAGG-CAACAACCCCAGGGCGTGTGTAGCAAGGACTCGAGCAGGGGTGTCTGGAGAGGAGAGAGTCGGCAAAGAGGGCAGCAAAAG-AAGAGCCATGCTGCATGCTCT--------GGGTC-CCTCCAGGTGAGGCCTGGGCAC---CCAAGCTCCCTATTTGTCC-CGGCACCAGGGACCCCCAG-CCCTTTCTTCAGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75991474 220 + 121039945 tagtccctgacaaccagtcAGGGTAGCACTTCC-CTGAGAGG-CAACAACCCCAGGGCAGGGGTAGCAAGGACTCGAGCAGGGGTGTCTGGAGAGGAGAGAGTCGGCAAAGAGGGCAGCAAA----AGAGCCACGCTGCATGCTCTG-------GGGTC-CCTCCAGGTGAGGCCTGGGTGC---CCCAGCTCCCTATTTGTCCTTGGCACCAGGGGCCCC-ATCCCCCTTCTTCAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8232806 224 + 169600520 gtgcccctgataaccagtcaggctcGCACTTCC-CCGAGAGG-CAACAACCCCAGGGCGTGTGTAGCAAGGACTTGAGCAGGGGTGTGTGGAGAGGAGACAGTCGGCAAAGAGGGCAGCAAAAG-AACAGCCATGGTGTGTGCTCTG-------GGGTC-CCTCCAGGTGAGGTCTGGGAGC---CCCAGCTCCCTATTTGCCCTTGGCACCAGGGACCCCCAGCCCCTTTCTTCAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170296276 223 - 171882078 gggcccctgacaaccagtcaggctgtcactCCC-GCGAGAGG-CCACAACCCCAGGGCGTGTGTAGCAAGGACTCGAGCAGGGGTGTGTGGAGAGGAGACAGTCGGCAAAGAGGGCAGCAAAAG-AACAGCCATGCTGCGTGCTCTG-------GGGTC-CCTCCAGGTGAGACCTGAGCAC---CCCAGCTCCCTATTTGTCCTTGGCACCAGGT-CCGCCAGCCCCTTTCTTCAGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1470214 224 +   1584492 GCGCCCCTGACAACCAGTCAGGCTCGCACTCCC-CCGAGAGG-CCACAACCCCAGGGCGTGTGTAGCAAGGACTTGAGCAGGGGTGTGTGGAGAGGAGACAGTCGGCAAAGAGGGCAGCAAAAG-AACAGCCATGCTGCGTGCTCTG-------GGGTC-CCTCCAGGTGAGGTCTGGGAGC---CCCAGCTCCCTATTTGCCCTTGGCACCAGAGACCCCCAGCCCCTTTCTTCAGG
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3043071 224 +   3749464 GGGCCCCTGACAACCAGTCAGGCTCGCACTCCC-CCGAGAGG-CAACCACCCCAGGACGTGTGTAGCAAGGACTAGAGCAGGGGTGTGTGGAGAGGAGAGAGTCGGCAAAGAGGGCAGCAAAAA-AATAGCCATGCTGCATGCTCTG-------GGGTC-CCTCCAGGTGAGGTCTGGGTGC---CGCAGCTCCCTATTTGCCCTTGGCACCGGGGGCCCCCAGTCCCTTTCTTCAGG
i colAng1.NW_012115677v1    I 523 C 0
s saiBol1.JH378108           49811799 229 +  54856640 gggcccctgaccaccagtcAGGCTAGCAATTCC-CTGAGAGG-CGACAGCCCCACAGCGTGTGTGCCAAAGACCTGAGCAGGGATGTCTTTAGAAGAGAGAGTTGGCAAAGAGGGCAGCAACAG-AAGAGCCATGCTGCATG-TCCCTGTTGT-GGGTC-CCTCCAGGTGAGGCCTGGGTGC---CCCAGCTCCCCATTTGCCCTTGGCACCAGGGTCCCCCAGCCCCTTTTTACAGG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9396037 231 +  14477005 gggctcctgacaaccagtcAGGCTAGCACCTCC-TCGAGAGG-CAACAACCCCAGGGCGTGTGTGGCAAGGACTCGAGCAGGGGTGTCTAGAGAAGAGAGAGCAGGCAAAGAGGGCAGCAACAG-AAGAGCCATGCTGCATGCTCCGTGCTCTGGGGTC-CCTCCAGCTGAGGCCTGGGCCC---CCCAGCTCCCCATTCGCCCTTGGCACCAGGGGCCCCCTGCCCCTTTCTTCAGG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30959252 215 +  31380117 GGGCCTCTTACA---AGTTAAGCTAGTTTTTCC-CCAAGAGGTTAACAACCCCGGGGCTAGTGTTGTAAGGACCCAAGCAGGGGCATCTGGAGAAGAGAGAGTAGGCAAAG-----------------AGCCATGCGGCATGCTCTGTACTCA-GGGTCGCCTCCAGCTGAAGCCTAGCCACCCACCCAGCACCC-ATTCTCCCTTGACACCAGGGGACCCCAGCTTCTTTCTTCACA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5831561 209 -  61074082 -------------ccagccaagccagtgcttcc-tcCAGAGG-CTACAGCCCTGGGGCAAGTATGGAAAGGACTCAAGCAGGGGTGTCCGGAGAACAGA-AGGAGGCAAAGAAGGCAGCCACAG--AGAGCCATGCCGCATGCTCTG-------GGGTC-CCTCCACCTGAGACTCAAACCC---CCCGACACCCCATTCTCCCTTAGCACCAGGGTCCCCCAGCCCCTTTCTTCAGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             410619 229 -    584178 gggctcctgacaaccagGCAGGCTAGGGCTTCTATTGAGAGG-CCACAGCGCCAGGGCAAG---ACAGTGGGTCAGGAGAGCAGTGCCACTGGAAAAGACAGTGGGTCAGGAGAGCAGCAAGAGAAAGCACCAGGCTGCGTGCTCAGTGCTCTGGGGTC-CCTCCAGCTGAGACGTAGGC-C---CCCGGCACTCCACTCTCCCTTGGTACCAGGGACCCCCAGCCCCTTTCTTCAGA
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1012398   0 -   1842816 C
e panPan2.chr15              73915620  39 -  99763055 I
e manLeu1.NW_012102332v1       382967 956 -   3636681 I
e macNem1.NW_012011934v1       363875 831 +   2379783 I
e chlSab2.chr26               7516685  39 +  58131712 I

a score=3090042.000000
s hg38.chr15_KI270851v1_alt     79536 556 +    263054 GCCCCAAGGAGAAACTAGAGCCCAGGATTGGCAGCGTGGAATCAGGGGA-CCCCAGTGGACTCTTACCAAAGATTTGATGGTGTTCTTCAGTTGACTGACTTTTACGGACCTCGAGTCTGGGACTACTGCTAGTTCTTGGCACGGGCTCTGAGGCGCATGCAGAgaggaggag--gtggaggaggagtgg----------ggggagaggtagagagagCAATCATTAGGGCTGGGG---TGTGTGTGGACTGTCTCAGCTGGCAGAGGGGCACCCCGTCCCACCTGGAGGAGGAGGTTGGAGGGCTGCCCTGC-AGGGTCACTGCACCTCTGCCCAGAGCCTCTTACCTCCAGATCCTTCAGGGTAGCAGATGATGTAGGGCTCTCCCCGTGGATACCTGTTGCTGACTACAAGAGAT---GAGAGTG--CACATGAAGATG--TTC--TGTC-CCACTCAGTATCTAAGCCCTCTGACTTCTTTTCTTCCCCATCAACTGGCACA-------ATTTTCTTTTCTGCCTATCTTGGACCCTTTGTCCCAT-AACTCCTTTGTGCCAACTTCTCTCATGGTTCTTATCTCCC
s panTro5.chr15               9312601 556 +  83230942 GCCCCAAGGGGAAACTGGAGCCCAGGATTGGCAGCGTGGAATCAGGGGA-CCCCACTGGACTCTTACCAAAGATTTGATGGTGTTCTTCAGTTGACTGACTCTTACGGACCTCGAGTCCAGGACTACTGCTAGTTCTTGGCACGGGCTCTGAGGCGCATGCAGagaggaggag--gtggagcaggagtag----------ggggagaggtagagAGAACAATCATTAGGGCTGGGG---TGTGTGTGGATTGTCTCAGCTGGCAGAGGGGCACCCAGTCCCCACTGTGGGTGGAGGTTGGAGGGCTGGCCTGC-AGGGTCACTGCACCTCTGCCCAGAGCCTCTTACCTCCAGATCCTTCAGGGTAACAGATGATGTAGGGCTCTCCCCGTGGATACCTGTTGCTGACTACAAGAGAT---GAGAGTG--CACATGGAGATG--TTC--TGTC-CCCCTCAGTATCTAAGCCCTCTGACTTTTTTTCTTCCCCATCAACTGGCACA-------ATTTTCTTTTCTGCCTATCTTGGACCCTTTGTCCCAT-AACTCCTTTGTGCCAACTTCTCTCGTGGTTCTTATCTCCC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        18967 552 -    281578 G-CCCAAGGGGAAACTGGAG-CCAGGATTGGCAGCGTGGAATCAGGGGA-CCCCACCGGACTCTTACCAAAGATTTGATGGTGTTCTTCAGCCGACTGATTTTGACGGACGTTGAATCCAGGACTACTGCTCGTTCTTGGCACGGGCTCTGAGGTGCATGCAGAgaggaggag--gtggagcaggagtgg----------ggggagaggTAGAGAGAACGATCGTTAGGGCTGGG-----GTGTGTGGGCTGTCTCAGCTGGCAGAGGGGCACCCAGTCCCACCTGGAGGAGGAGGTTGGAGGGTTGACCCGA-AGGGTCACTGCACCTCCACCCAGAGCCTCTTACCTCCAGATCTTTCAGGGTAGCAGATGATGTAGGGCCTTCCCTGTGGAAACCTGTCGCTGACTACAAGAGAT---GAGAGTG--CACATGGAGATG--TTC--TGTC-CCCCACAGTGTCTGAGCCCTCTGACTTCCTTTCTTCCCCATCAACTGGCAAC-------ATTTTCTTTTCTGCCTATCTTGGACCTTTTGTCCCAT-AACTCCTTTGTGCCAACTTCTCTCATGGTTCTTATCTCCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75991694 556 + 121039945 GCCCCGATGGGAAACTGGAGCCCAAGATTGGCAGCATGGAATCAGGGGA-CCCCATTGGGCTCTTACCAAAGATTTGATGGTATTCTTCAGTTGACTGATTTTTACGGACTTCGAGTCCAGGACTACTGCTAGTTCTTGGCACGGGCTCTgaggtacatgcagagaggaggag--gtggaggaggagtag----------ggggagaggtagagAGAACAATCATTAGGGCTGGGG---TGTGTGTAGGCTGTCTCAGCTGGCAGGGGGGCACCGAGTCCCCGCTGTGGGAGGAAGTTGGAGGGCTGGCCTGC-AGGGTCACTGCACCTCCGCCCAGAGCCTCTTACCTTCAGATCCTTCAGGGTAGCAGATGATGTAGGGCCCTCCCCGTGGAAACCTGTTGCTGACTACAAGAGAT---GAGAGTG--CACATGGAGATG--TTC--TGTC-CCCCTCAGTATCTAAGCCCTCTGACTTCCTTTCTTCCCCATCAACTGGCAAC-------ATTTTCTTTTCTGCCTATCTTGGACCCTTTGTCCCAT-AACTCCTTTGTGCCAACTTCTCTCATGGTTCTTATCTCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8233030 556 + 169600520 GCCCCAAGGGGAAAATGGAGCCCGGGATTGGCAGCGTGGAATCAGGGGA-CCCCACTGGACTCTTACCAGAGATTTGATGATGTTATTCAGTCGACTGATTTTGACAGACCTCGAGTCCAGGACAGCTGCTAGTTCTTGGCACGGGCTCTGAGGCGCATGCAGAgaggaggag--gtggaggaggagtcg----------ggggagaggTAGAGAGAACAATCATTAGGGCTGGGG---TGTGTGTGGGCTGTCTCAGCTGGCAGAGGGGCACCCAGTCCCCACTGTGGGAGGAGGTTAGAGGATCGGCCTGC-AGGGTCACTGCACCTCCACCCAGAGCCTCTTACCTCCAGATCCTTGAGGGGTGCAGATGACGTAGGGCCCTCTCCGTCGATACCTGTTGCTGACTACAAGAGGT---GAGAGTG--CACATGGAGATG--TTC--TGTC-CCCCTCAGTGTCAGAGCCCTCTGACTTCCTTTCTTCCCCATCAATGGGCAAC-------ATTTTCTTTTCTGCCTATCTTGGACCCTTTGTCCCGT-AACTCCTTTATGCCAACTTCTCTCGTGGTTCTTATCTCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170296499 555 - 171882078 GCCCCAAGGGGAAACTGGAGCCCAGGATTGGCAGTGTGGAATCAGGAGA-CCCCACAGGACTCTTACCAAGGATTTGATGGTGTTCTTCAGTTGACTGATTTTGACGGACCTCGAGTCCAGAGCTGCTGGTAGTTCTTGGCACGGGCTCTGAGGCACATGCAGAgaggaggag--gtggaggaggagTC-----------ATGGAGAGGTAGAGAGAACAATCATTAGGGCTGGGG---TGTGTGTGGGCTATCTCAGCTGGCAGAGGGGCACCCAGTCCCTGCTGTGGGAGGAGGTTGGAGGATTGGCCTGC-AGGGTCACTGCACCTCTGCCCAGAGCCTCTTACCTCCAGTTCCTTCAGGGGAGCAAATGATATAGGGCTGTCTCCGAGGATACCCGTTGCTGACTACAAGAGAT---GAGAGTG--CACATGGAGATG--TTC--TGTC-CCCCTCAGTGTCAGAGCCCTCTGACTTCCTTTCTTCCCCATCAACTGGCAAC-------ATTTTCTTTTCTGCCTATCTTGGACCCTTTGTCCCAT-AACTCCTTTGTGCCAACTTCTCTCATGCTTTTTATCTCCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1470438 555 +   1584492 GCCCCAAGGGGAAACTGGAGCCCGGGATTGGCAGCGTGGAATCAGGGGA-CCCCACTGGACTCTTACCAGAGATTTGATGATGTTATTGAGTCGACTGATTTTGACGAACCTCGAGTCCAGGACAGCTGCTAGTTCTTGGGACGGGCTCTGAGGCGCATGTAGAGAAGAGGAG--GTGGAGGAGGAGTC-----------GTGGAGAGGTAGAGAGAACAATCATTAGGGCTGGGG---TGTGTGTGGGCTGTCTCAGCTGGCAGAGGGGCACCCAGTCCCCACTGTGGGAGGAGGTTGGAGGGCTGGCCTGC-AGGGTCACTGCACCTCCACCCAGAGCCTCTTACCTCCAGATCCTTGAGGGGTGCAGATGACGTAGGGCCCTCTCTGTCGATACCTGTTGCTGACTACAAGAGAT---GAGAGTG--CACATGGAGATG--TTC--TGTC-CCCCTCAGTGTCAGAGCCCTCTGACTTCCTTTCTTCCCCATCAATGGGCAAC-------ATTTTCTTTTCTGCCTATCTTGGACCCTTTGTCCCGT-AACTCCTTTATGCCAACTTCTCTCATGGTTCTTATCTCCC
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3043295 552 +   3749464 GCCCCAAGGGGAAACTGGAGCCCAGGATTGTCAGCGTGGAATCAGGGGA-CCCCACTGGACTCTTACCAAAGATTTGATGGTGTTCTTCAGTAGACTGATTTTGACCGGCCTTGAGTCCAGGACTGCTGCTAGTTCTTGGGACGGGCTCTGAGGTGCAAGTAGAgaagaggag--gtggaggaggagtg-----------ggggagaggTAGAGAGAACGATCATTAGGGCTGGGG---TGTG-GTGGGCTGTCTCAGCTTGCAGAGAGGCACCCAGTCCCCGCTGTCGGAGGAGGTTGGAGGGCTGGCCTGC-AGGGTCACTGCACCTCCGCCCAGAGCCTCTTACCTCCAGATCCTTGAGGTATGCAGATGACGTAGGGCCCTCTCCATCGATACCTGTTGCTGACTACAAGAGAT---GAGAGTG--CACATGGAGATG--TTC--TGTC-CTTCT--GTGTCTAAGCCCTCTGACTTCCTTTTTTCCCCATCAACTGGCACA-------ATTTTCTTTTCTGCCTATCTTGGACCCTTTGTCCCGT-AACTCCTTTGTGCCAACTTCTCTCATGGTTCTTATCTCCC
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49812028 539 +  54856640 GCCCCTAGGGGAAACTGGAGCCCAGGATCAGCAGTGTGGCATCAGGGGA-TCCCACTGGACTCTTACCAATAACTGAATGGTGTTATTCAATTGACTTATTGCTCTCGAGCTCCAGTCCAGAGTCACTGTTCTTTCTTGGTAGCGCCTCTGAGGTGCATGCAGAGAGGAGGAG--TTGGAGGAT--TTGG----------GG---GAGGCAGAGAGAACAGTCATTAGGGCTGTGT---CGTATGGGGGCTGTCTCAGCTGACAGAAGGGCACCCAGCCTCTGCTGTGGAAG-AGGCTGGAGGGCTGGCCTGC-GGGATCACTGCACCTCGATGCAGGGCCTCTTACCTGCAGATCTTT----------CATGACACAGGGCCCTCCGCGTGAATACCTGTTTCTGACTACAAGAGAT---GAGAGTG--TACGT-GAGATG--TTC--TGTC-CCCCTCGGTCTCTAAGCCCTCTGACTTCCTTTCTTCCCCATCAACTGGCAAA-------ATTTTCTCTTCTGCCTGTCTCGGACCCTTTGTCCCAT-AACCCCTTTGTGCCGGCTTTTCTCATGGTTCTTATCTCCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1012398 549 -   1842816 GCCCCAAGGGGAAACTGGAGCCCAGGATTGGCAGCGTGGAATCAGGGCA-CCCCACTGGGCTCTTACCAATAAATTGACGGTGTTACTCAGTTCACTGGTTGTGACGGAGCTTGAGTCCTGGG---CTATTTGTAGTTGGTGTGCGCTCTGAGGCACATGCAGAGAGGAGGAG--TTGGGGGAGGATTGG----------GG-TAGAGGTAGAGAGAACATTCATTAGGGTTGGGG---TGTGTGGGGGCTGTATCGGCTGGCAGAGGGGCACCCAGCCACCACTGTGGGAGAAGGGTGGAGGGCTGGCCTGC-AGGGTCACTGTACCTTAGCTCAGAGCCTCTTACCTCCTGATCTTTCATGGTGGCACATGGCGCAGGGCCCACCTTGTGACCACCTGCTGCTGACTACAAGAGAT---GAAAGTG--CACATGGAGATG--TTC--TGT--CCCCTCAGTGTCCAAG-CCTCTGACTTCCTTTCCTCCCCATCAGCTGGCAGC-------ATTTCCTGTTCTGTCTCTCTCGGACCCTTTGTCCCAT-AACACCTTTGTGCCAGTTCCTCCCGCGGTTTTTATCT-CC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9396268 556 +  14477005 GCCCCAATGGGAAACTAGAGCCCAGGATTGGCAGCGTGGAATCAGGGGA-CCCCACTGGACTCTTACCAATTTCTCTATCGTGACATTGAGTTGTTTGTTTGTTACATAGCTGGAGTCCAGGGCTACTGCTAGCTGTTGGTACCGGCTCTGAGGCGCATGCAGAGAGGAGGAG--TTGGAGGAGGATTGG----------GGGGAGAGGTAGAGAGAGCAATCATTAGGGTTGGGG---GGTGTGTGGGCTGTCTCAGCTGGCAGAGGGGCACCCAGCCCTCGCTGTGGGAGGAGGCTGGAGGGCTGGCCTGC-AGGGTCACTGAGCCACGGCCCAGGGCCTCTTACCTCCAGGTCTTTCAGGTTAGCAGATGATGCCGGGCCCTCCCCATTGACACATGTTGTAGACTGTAAGAGAC---GAGAATG--CACATGGAGATG--TTC--TGT--CGTCCCAGTGTCTAAGCCCTCTGACTTCCTTTCTTCCCCTTCATCTGGCAAC-------ATTTTCTTTTCTGCCTAACTTGGACCCTTTGTCCCGTAAACCCTTTTGTGCCAACTTCTCTCATGGTTCTTATTTCCC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30959467 553 +  31380117 GCCCCAAGGGAAAAGTGCAGCCCAGGATGGGCGACATGGCATTAGGGGACCCCCACTGGACTCTTACCAATTCCTCTACTTTGCTACTGAGTTGTTTGTTTGTTAGATAGCTGGAGTCCAGGGCTACTGCTAGCTCGTGGTACCGGCTCTGAGGCGCATGCAGA---GAGCAG--TTGGAGGAGGGGTGG----------GGGGAGAGGTAGAGAGAGCAATCATTAGGGTTAAGG----ATCTAAGGGCTATCTCAACTGCCAGAGGGGAACTCAGCCCCTACTGTGGG---AAGTCAGGGGGCTGGCCTGC-AGGGTCACTGGGCCATAGTTCAGGGCCATTTACCTCCAAATCCTTCAGGTTAATGGACGATGAAAGGCTTGTTCCATTGACATAGGACGTAGACTAAAAGAGAT---GAGGGTC--TACTCAGTGATG--CTC--TGTCTCCTCACAG---CTAAGCCCTGTGACTTCCTTTCTTCCCCATCAACTTTCTTCCCTATCAATTTTTTTTTCTGGCTAACTTGGACCCCTCCTCTCAT-AATCCCTTCCTACCAACT--TCTCAGCATTCTTATCTCTC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5831770 534 -  61074082 GCCCCAGGGAAAAACTGGAGCCCCAGATTGGCAGTGTGGAATCAGGGGA-CCCCACTGGACTCTTACCAATTCCTCTATCTTGCTACTGAGTTGTTTGTTTGTTAGATTGCTGGAGTCCAGGGCTAGTGATAGCTCTTGGTACCGGCTCTGAGGCGCATGCAgag--gaggag--gaggaggaggagTTGGACGAGGGTTGGGGAGAGGTAGAGAGAGCAGTCATTAGGGTTGGG------------GGCTGTCTGGGCTGGCAGCGGGGCACCCAGCCCCCGCTGTGGGAGGAGAT--GGGGGCTGGCCTGC-AGGGTCCTGAGACCATGGTCTAGTGCCACTTACCTCTAGATCCTTTATGTTAGCAGAAGATGCCAGGCCCTCCCCATTGATGTAGGATGAAGACTAGGAGACAC---GAAAGGGCTCACATGGAGGCGCACTC--TGCC-CGCCCCAGTACCTAAGCCCTCTGACTCCTCATCCTGCCCATCAGCTGCAAAC-------------TTTTCTGCCTAACT--------------AAC-CCCTCCTTTGTGCCA---CTCCTCCTGGTTCTTAGCCCCC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             410848 561 -    584178 GCCCCAAGGGGAAATTGGAGCCCAGGATTGGCAGCATGGACTCAGGGGA-CCCCACTGGACTCTTACCAATTCCTCTATCTTGTTAATGAGTTGATTGTTTGTTAGATTGCTGGAATCCAGGGCTACTGATAGCTCTTGGTATCGGCTCTGAGGCGCATGCAGAGAGGAGGAGGAGTGGGAAGAGAGTTG----------GGGGAGAGGTAGAGAGAGCAATCGTTAAGGTTGGGGGGGTGTGTCTGGGCTGTCTCAACTGGCAGTGGGGCACCCAGCCCCCACTGTGGGAGGAGGTGGGGGGACTGGCCTGCAAGGGTCACCAGGCCACAGTCCAGGGCCACTTACCTCCAGATGCTTCATGTTAACAGATG---TTAGGCCCTCACCATTGAAGTAGGATGAAGACTAGAAGAGATTGAAAGATCT--CACATGGAGATG--CTCTTTGTC-CCCAAAAGCACCTGAGCTGTTTGACTTCCTTTTTTCCCCACCAACTGGCAAG-------AGTTTATTTTATGCCAAATTTGGGCCTATCTTCTTAC-AA-TCCCTTATGCCACCT--TTCCGTGGTTCTTATCGTCC
i dasNov3.JH564958          C 0 I 3822
e panPan2.chr15              73915620  39 -  99763055 I
e manLeu1.NW_012102332v1       382967 956 -   3636681 I
e macNem1.NW_012011934v1       363875 831 +   2379783 I
e chlSab2.chr26               7516685  39 +  58131712 I

a score=35261.000000
s hg38.chr15_KI270851v1_alt     80092 5 +    263054 CACCA
s panTro5.chr15               9313157 5 +  83230942 CACCA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        19519 5 -    281578 CACCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75992250 5 + 121039945 CACCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8233586 5 + 169600520 CACCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297054 5 - 171882078 CACCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1470993 5 +   1584492 CACCA
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3043847 5 +   3749464 CACCA
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49812567 5 +  54856640 CACCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1012947 5 -   1842816 CACCA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9396824 5 +  14477005 CACCA
i aotNan1.NW_018502759v1    C 0 I 5929
s otoGar3.GL873533           30960020 5 +  31380117 CATCA
i otoGar3.GL873533          C 0 I 4
s canFam3.chr9                5832304 5 -  61074082 CGTCA
i canFam3.chr9              C 0 I 4619
s dasNov3.JH564958             415231 5 -    584178 catca
i dasNov3.JH564958          I 3822 C 0
e panPan2.chr15              73915620 39 -  99763055 I
e manLeu1.NW_012102332v1       382967 956 -   3636681 I
e macNem1.NW_012011934v1       363875 831 +   2379783 I
e chlSab2.chr26               7516685 39 +  58131712 I

a score=2126.000000
s hg38.chr15_KI270851v1_alt     80097 3 +    263054 CAG-
s panTro5.chr15               9313162 3 +  83230942 CAC-
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        19524 3 -    281578 TCC-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75992255 3 + 121039945 TCC-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8233591 3 + 169600520 TCC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297059 3 - 171882078 TCC-
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1470998 3 +   1584492 TCC-
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3043852 3 +   3749464 TCC-
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49812572 3 +  54856640 TTC-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1012952 3 -   1842816 TCC-
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533           30960029 3 +  31380117 TCC-
i otoGar3.GL873533          I 4 C 0
s dasNov3.JH564958             415236 2 -    584178 --ca
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9                5832309 4619 -  61074082 I
e aotNan1.NW_018502759v1      9396829 5929 +  14477005 I
e panPan2.chr15              73915620 39 -  99763055 I
e manLeu1.NW_012102332v1       382967 956 -   3636681 I
e macNem1.NW_012011934v1       363875 831 +   2379783 I
e chlSab2.chr26               7516685 39 +  58131712 I

a score=115023.000000
s hg38.chr15_KI270851v1_alt     80100 31 +    263054 CACCCTGCGGCCCTTTCAGTGACTCCTG--------------TGC
s panTro5.chr15               9313165 31 +  83230942 CACCCTGCGGCCCTTTCAGTGACTCCTG--------------TGC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        19527 32 -    281578 CATCCTGGGGCCCCTTCAGTGACTCCTG-------------ATGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75992258 32 + 121039945 CACCCTGGGGCCCTTTCAATGACTCCTG-------------ATGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8233594 32 + 169600520 CACCCTGGGGCCCTTTCTGTGACTCCTG-------------ATGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297062 32 - 171882078 CACCCTGGGGCCCTTTCAGTGAATCCTG-------------ATGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1471001 32 +   1584492 CACCCTGGGGCCCTTTCTGTGACTCCTG-------------ATGG
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3043855 32 +   3749464 CACCCTGGGGCCCTTTCAGTGACTCCTG-------------ATGG
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49812575 32 +  54856640 CACCCTGGGGCTCTTTCAGTGACTGCTG-------------AAGG
i saiBol1.JH378108          C 0 I 13
s cebCap1.NW_016107745v1      1012955 32 -   1842816 CACCCTGGGGCCCTTTCAGTGACTCTTA-------------AAGG
i cebCap1.NW_016107745v1    C 0 I 13
s otoGar3.GL873533           30960032 26 +  31380117 CCTCCTGAGCAGCTCTTA-----TCCTG--------------TGC
i otoGar3.GL873533          C 0 I 7451
s canFam3.chr9                5836928 45 -  61074082 CACCCTGGGTCTCTTTTGGTGCTTCCTATAGGGACAGTGTGATGG
i canFam3.chr9              I 4619 C 0
s dasNov3.JH564958             415238 42 -    584178 ---ccctgGGCTCTTTTGAGACTTCCTAAAGGGAGAAAATGATGG
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9396829 5929 +  14477005 I
e panPan2.chr15              73915620 39 -  99763055 I
e manLeu1.NW_012102332v1       382967 956 -   3636681 I
e macNem1.NW_012011934v1       363875 831 +   2379783 I
e chlSab2.chr26               7516685 39 +  58131712 I

a score=482484.000000
s hg38.chr15_KI270851v1_alt     80131  90 +    263054 CAAGTGACTGTTCTCATTGTCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAATC----------------GAACAGCAATGACCATATCCTGGGTGTTCTGGGT
s panTro5.chr15               9313196  90 +  83230942 CAAGTGACTGTTCTCATTGTCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAATC----------------GAACAGCAATGaccatatcctgagtgtcctgggt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        19559  87 -    281578 CAAGTGGCTGTTCCCATTGTCCTGGTTTCCCCTTGAGACTGGGGATGAGGAAAATC-----------------AACAGCAA--ACCATATCCTGGGTGTCCTGAGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75992290  90 + 121039945 CAAGTGGCTGTTCTCATTGTCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAATC----------------AAACAGCAATGACCATATCCTGGGTGTCCTGAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8233626  90 + 169600520 CAAATGGCTGTTCTCATTGCCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAATTC----------------AAAGAGCAATGACCATATCCTGGATGTCCTGGGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297094  90 - 171882078 CAAGTGGCTGTTCTCATTGTCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAATC----------------GAACAGCAATGACCATATCCTGGGTGTCCTGGGT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1471033  90 +   1584492 CAAATGGCTGTTCTCATTGCCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAATTC----------------AAAGAGCAATGACCATATCCTGGATGTCCTGGGT
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3043887  89 +   3749464 CAAATGGCTGTTCTCTTTGTCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAATC----------------AAACAGCAATGACCATATCCTGG-TGTCCTGGGT
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49812620  90 +  54856640 GAAGTGGCTGTTCTCATTGGCCTGGCTTCCCCTTGAGACTGGGAATAAGGAAAATC----------------AGACAGCAACGACCATTTCCTGGGTGTCCTGGCT
i saiBol1.JH378108          I 13 C 0
s cebCap1.NW_016107745v1      1013000  90 -   1842816 CAAGTGGCTGTTGTCATTGGGCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAGTC----------------AAACAGCAAGGACCATTTCCTGGGTGTCCTGGGT
i cebCap1.NW_016107745v1    I 13 C 0
s aotNan1.NW_018502759v1      9402758  90 +  14477005 CAAGTGGCTGTTCTCATTGGCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAATG----------------Aaacagcaactaccatttcctgggtgtcctaagt
i aotNan1.NW_018502759v1    I 5929 C 0
s otoGar3.GL873533           30967509  86 +  31380117 CAAGCGGCCATTCTCACTGGCCTTACTTCCCC-TGAGGCTGGAGATGAGAAAAATC----------------Aaatagcgactaccatttatggaatgtttat---
i otoGar3.GL873533          I 7451 C 0
s canFam3.chr9                5836973  96 -  61074082 CAGATGGCTATTCTCACTGCCTGGCTTCCCCCCTGAAGCCAGGGATGAGGAAAGTCACCAGGTCAGTATGTCAAATAG-GACTACCCTTGACTGAAT---------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             415280 103 -    584178 CAAGTGCCAGTTAGCA---GCTTGGCTTCTCCTTGAGGCTGGGAATGAGCAAAATCACCTAGGCAATAGCTAAaataggaactaccatttactgaatgtttactct
i dasNov3.JH564958          C 0 C 0
e panPan2.chr15              73915620  39 -  99763055 I
e manLeu1.NW_012102332v1       382967 956 -   3636681 I
e macNem1.NW_012011934v1       363875 831 +   2379783 I
e chlSab2.chr26               7516685  39 +  58131712 I

a score=224277.000000
s hg38.chr15_KI270851v1_alt     80221 32 +    263054 GTTTACAGCAGGCCATGTACT-AGAGA-TTAACA--
s panTro5.chr15               9313286 32 +  83230942 gtttacagcaggccatgtact-aggga-ttaaca--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73915659 32 -  99763055 GTTTACAGCAGGCCCTGGACG-AGGGA-TTAACA--
i panPan2.chr15             I 39 C 0
s gorGor5.CYUI01000141v1        19646 32 -    281578 GTTTACAGCAGGCCATGTACT-AGGGA-TTAACA--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75992380 32 + 121039945 GTTTACAGCAGGCCATGTACT-AGGGA-TTAACA--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8233716 32 + 169600520 GTTTACAGCAGGCCAAGTACT-AGGGA-TTAACA--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297184 32 - 171882078 GTTTACCGCAGGccatgtact-aggga-ttagca--
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1471123 32 +   1584492 GTTTACAGCAGGCCAAGTACT-AGGGA-TTAACA--
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7516724 32 +  58131712 GTTTACAGCAGGCCGTGGACT-AGGGA-TTAACA--
i chlSab2.chr26             I 39 C 0
s colAng1.NW_012115677v1      3043976 32 +   3749464 GTTTACAGCAGGCTATATACT-AGGGA-TTAACA--
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49812710 32 +  54856640 ATTTACAGCAGGCCATGTACT-AGAGA-TTGACA--
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1013090 32 -   1842816 GTTTACAGCAGACCATGTACT-AGGGA-TTAACA--
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9402848 32 +  14477005 gtttacagcaggtcctgtact-aggga-ttaaca--
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30967595 30 +  31380117 -tctataccatgcc-tgtact-gagaa-ttaata--
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5837069 33 -  61074082 GCTTATCCCACACCAGGCCCTAAGGGA-TTAATA--
i canFam3.chr9              C 0 I 202
s dasNov3.JH564958             415383 31 -    584178 ----gtcccagaccctctact-aaggactttatata
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012102332v1       382967 956 -   3636681 I
e macNem1.NW_012011934v1       363875 831 +   2379783 I

a score=947674.000000
s hg38.chr15_KI270851v1_alt     80253 152 +    263054 TAAA---AACAACAATAACag------atctcatttaaacttc-acaaatggaagtgaaac---aataccacct------------ctattatacagatgtgaaaagagaggcccgatgaggtcaagcaacttgccct-aattcatatccct-----agcagacaaagaggc-aggattcaaac
s panTro5.chr15               9313318 152 +  83230942 tgaa---aacaacaataacaa------atctcatttaaacttc-acaaatggaagtgaaac---aataccacct------------ctattatacagatgtgaaaagagaggcccaatgaggtcaagcaacttgccct-aaatcatatccct-----agcagacaaagaggc-aggattcaaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73915691 151 -  99763055 TAAA---AAC-ACAATGACAA------atctcatttaaacttc-acaaatgtaaggaaaac---aataccactc------------gtattttacagatgtgaaaagagaggcccaaagagctcaagcaatttgcgct-aaatcatatccct-----agcagatggaggggt-aggattcaaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        19678 157 -    281578 TAAA---AACAACAATAACAA------atctcatttaaacttc-acaaatggaagtgaaac---aataccacct------------ctattatacagatgtgaaaacagaggcccaatgaggtcaagcaacttgccct-aaatcatatccctagcagagcagatggagaggc-aggattcaaac
i gorGor5.CYUI01000141v1    C 0 I 303
s nomLeu3.chr6               75992412 152 + 121039945 TAAA---AACAACAGTAACAA------atcccatttaaacttc-acaaatggaagtcaaac---aataccacct------------ctgttatacagatgtgaaaagagaggcccaaagagctcaagcaacttgccct-aaatcatatccct-----agtagatggagaggc-aggattcaaac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8233748 151 + 169600520 TAA-------AACAGTAACAA------atctcatttaaacctc-aaaaatggaagtcaaacaataataccacct------------ctattacacagatgtgcaaagagaggcccaaagagctcaagcaactcaccct-aaatcatatccct-----agcagatggagaggc-aggattcaaac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297216 155 - 171882078 taaa---aacaacagtaacaa------atctcatttaaacttc-acaaatggaagtcaaacaataataccacct------------ctattatacagatgtgcaaagagaggcccaaagagctcaagcaacttgcccc-aaatcatatccct-----aacagatggagaggc-aggattcaaac
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1471155 151 +   1584492 TAA-------AACAGTAACAA------ATctcatttaaacctc-aaaaatggaagtcaaacaataataccacct------------ctattacacagatgtgcaaagagaggcccaaagagctcaagcaactcaccct-aaatcatatccct-----agcagatggagaggc-aggattcaaac
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7516756 149 +  58131712 TAAA---AACAACAATGATAA------atctcatttaaacttc-actaatgtaggtaaaac---cacaccactc------------ctattttacagatgtgaaaagagaggcccaaagagctcaaggaatttgccct-atatcatatgccc-----agcagat----aggcgaggattcaaac
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3044008 163 +   3749464 TAA-------AACAATAACAA------atctcatttaaacctc-acaaatggaagtcaaacaataataccacctatattatatagattattatatagatgtgcaaagagaggcccaaagagctcaagcaacttgacct-aaattatatccct-----ggcagatggagaggc-aggattcaaac
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49812742 154 +  54856640 TAAAAACAACAACAATCACAA------atctcatttaaacttc-aaaaatagaattca-ac---aataccactt------------ctattttatagatgtgaaaagagaggcccaaagagctcaagaaacttgccct-aaatcgtatccct-----agcagatggagaggc-aggattcaaac
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1013122 153 -   1842816 -AAAAGCAACAGCAATAACGA------atctcatttcaccctc-acaaatggaagtcagac---aataccactt------------atattttacagatgtgaaaggagaggcccaaaaagctccagcaacttgccct--aatcatatccct-----agcagatggagaggc-aggattcaaac
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9402880 147 +  14477005 taaacacaacaacagtaacaa------atctcatttaaacttc-acaagtgtaaataaaac---aatac---------------------tttacagatgtgaaaagagaggcccaaaaagctccaacaatttgcactaaaatcatatccct-----agcagatggacaggt-atgatacaaac
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30967625 145 +  31380117 taaa---aacagcaaccaaaa------acctcatttaaacttctataagtataagtaaaac---agtattaccc------------ctattttacacgtgtgaaaagagaagccc--------caaacaatttgccct-aaatcatatccct-----agcagtgggaaaggt-agaattcaaac
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5837304 116 -  61074082 taaa---agaaaCAAAAAAAATCAACCATCTCATTCCAGTGTC-ACCAGTGT---TAAGAC---ATTATTACCC------------CAACTTTATTGAT----------------------------------------GGGGCATATTCCC-----AGCAGAGGGAGAGGT-AGGATTCAAAT
i canFam3.chr9              I 202 C 0
s dasNov3.JH564958             415414 132 -    584178 -----------taaatacaga------aactcctttaaacttc-acaagtgtaaataaaac------attatcc------------ctgttttacagacatgtaaacagaggcctaaagatcttaaacaatttctcca-aaatcatacccct-----agcagaggaagacaa-ag---------
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012102332v1       382967 956 -   3636681 I
e macNem1.NW_012011934v1       363875 831 +   2379783 I

a score=69799.000000
s hg38.chr15_KI270851v1_alt     80405 11 +    263054 ccagaattctt
s panTro5.chr15               9313470 11 +  83230942 ccagaattctt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73915842 11 -  99763055 ccagAATTCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        20138 11 -    281578 ccagaattctt
i gorGor5.CYUI01000141v1    I 303 C 0
s nomLeu3.chr6               75992564 11 + 121039945 ccagAATTCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8233899 11 + 169600520 ccagaattctg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297371 11 - 171882078 ccagaattctg
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1471306 11 +   1584492 ccagaattctg
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7516905 11 +  58131712 ccagAATTCTT
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3044171 11 +   3749464 ccagaattctt
i colAng1.NW_012115677v1    C 0 M 2155
s saiBol1.JH378108           49812896 11 +  54856640 ccggAATTCTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1013275  5 -   1842816 ccaga------
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9403027 11 +  14477005 ccagaactctt
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30967770 11 +  31380117 tcagtactctt
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5837420  2 -  61074082 CC---------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             415546 11 -    584178 ccagaattctt
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012102332v1       382967 956 -   3636681 I
e macNem1.NW_012011934v1       363875 831 +   2379783 I

a score=470144.000000
s hg38.chr15_KI270851v1_alt     80416  84 +    263054 cacaggtacccaacagt---ccatccacAATCTTAACAATTACCCTCTAGTGCCCCTTGGG-----------------T-CCCCTGTCCCCAGGAACCTAGTCA--G
s panTro5.chr15               9313481  84 +  83230942 cacaggtacccaacagt---ccatccacaatcttaacaattaccctctactgCCCCTTGGG-----------------T-CCCCTGTCCCCAGGAACCTAGTCA--G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73915853  84 -  99763055 AACCAGTACCTGGCAGT---TCTTCCACAATCTTAACAATTACCCTCCACCACCCCTTGGG-----------------C-CCTCTGTCCCCAGGAGCCTGGCCA--G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        20149  84 -    281578 aaccagtaCCCAGCAGT---CCATCCACAATCTTAACAATTACCCTCTATTGCCCCTTGGG-----------------C-CCCCTGTCCCCAGAAGCCTGGTCA--G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75992575  84 + 121039945 AACCAGTACCCCACCAT---CCATCCACAATCTTAACAATTACCCTCTACTGCCCCTTCGG-----------------C-CCCCTGTCCCCAGAAGCCTGGTCA--G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8233910  83 + 169600520 aaccagtacccaacagt---ctatccacaatcttaacaattaccctctactgCCCCTTGTG-----------------C-CCCCTGTCCCCAGGAGCCTGGCCA---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297382  84 - 171882078 aaccagtacccaacagt---ctatccacaatcttaactattaccctctactgCCCCTTGTG-----------------C-CCCTTGTCCCCAGGAGCGTGGTCAG--
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1471317  83 +   1584492 aaccagtacccaacagt---ctatccacaatcttaacaattactctctactgCCCCTTGTG-----------------T-CCCCTGTCCCCAGGAGCCTGGCCA---
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7516916  84 +  58131712 AAGCAGTGCCTGGGAGT---TCTTCCACAATCTTAACAATTACCCTCCACCACCCCTTGGG-----------------C-CCTGTGTCCCCAGGAGCCTGGCCA-G-
i chlSab2.chr26             C 0 C 0
s saiBol1.JH378108           49812907 101 +  54856640 AACCAGGACCTGACAGT---CCATCCACAATCTTAGCAAATACCCTCCACTGCCCCGTGGGCATCCCCCCAGCCCCCAC-ACCCCATCCCCAGGAGCCTGGCTG--G
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1013280  70 -   1842816 --------------agt---tcttccacaatcttaacagttcccctctactgccccttggg-----------------c-ccctttTCCCCAGAAGCCTGGCCA--G
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9403038  84 +  14477005 aacCAGTACCAGACAGT---TCTTCCACAATCATAAAAATTACCCTCTACTGCCCCTTGGG-----------------C-CCCCGGTCCCCAGGAACCTGGCCA--G
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30967781  83 +  31380117 acccagtacccaacact---ttttccacAATCTTAACCAGTTCTCCTTACTTCTCC-TAAG-----------------C-CCCCTATCCCCAAGGGCCTGGCAA--A
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5837422  80 -  61074082 -----GTACCTGACATC---TCCTCCACAGTATCAACCACCACCCTCTACTGCCCCTCAAA-----------------CACCCCTGGCCCCAGGAACCTGGCCA--G
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             415557  88 -    584178 aaccagtacttgatactttctcttccacagtctaaaccagtaccctctactgCACCTTCAG-----------------CATCCCGATCCCAGGGAGGCTGACCA--G
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       382967 956 -   3636681 I
e macNem1.NW_012011934v1       363875 831 +   2379783 I

a score=514505.000000
s hg38.chr15_KI270851v1_alt     80500 51 +    263054 CCAAGACTCACATCTCCAGGTGAGTGGCAACCACCAGAAGTGGCTGTCTCA
s panTro5.chr15               9313565 51 +  83230942 CCAAGACTCACATCTCCAGGTGAGTGGCAACCACCAGAAGTGGCTGTCTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73915937 51 -  99763055 CCAAGACTCACATCCTCAGGTGAGTGGCAACCACCAGAAGTGGTTGTCTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        20233 51 -    281578 CCAAGACTCACATCCCCAGGTGGCTGGCAACCACCAGAAGTGGCTGTCTCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75992659 51 + 121039945 CCAAGACTCACATCCCCAGGTGAGTGGCAATCACCAGAATTGGCTGTCTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8233993 51 + 169600520 CCAAGACTCACATCCCCAGGTGAGTGGGAACCACCAGAAATGGCTGTCTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297466 51 - 171882078 CCAAGACTCACATCCCCAGGTGAGTGACAACCACCAGAAGTGGCTGTCTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       364706 51 +   2379783 CCAAGACTCACATCCTCAGGTGAATGGCAACCACCAGAAGTGGTTGTCTCA
i macNem1.NW_012011934v1    I 831 I 97
s cerAty1.NW_012002601v1      1471400 51 +   1584492 CCAAGACTCACATCCCCAGGTGAGTGGGAACCACCAGAAGTGGCTGTCTCA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7517000 51 +  58131712 CCAAGACTCACATCCTCAGGTGAGTGGCAACCACCAGAAGTGGTTGTCTCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       383923 51 -   3636681 CCAAGACTCACATCCTCAGGTGAATGGCAACCACCAGAAGTGGTTGTCTCA
i manLeu1.NW_012102332v1    I 956 I 97
s saiBol1.JH378108           49813008 51 +  54856640 CCAAGACTCACATCCCCAGGTGACTGGCAGCCACTAGAGGGGGCTGACTCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1013350 51 -   1842816 CCAAGACTCACATGGCATGGTGACTGGCAACCATCAGAAGTGCCTGTCTCA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9403122 51 +  14477005 CCAAGACTCACATCCTCAGATGAGTGGCAATCACCAGAATTGGTTGTCTCA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30967864 51 +  31380117 CCATGACTCACGTCCTCAGGTGAGTGGCAATCATCAGAAGTAGTTGACTCA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5837502 51 -  61074082 CCAGTACTCACATCCTCAGGAGAGTGACAATCATTGGAAGTGGTAGTCTCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             415645 48 -    584178 CCAAGACTCACATCCTCAGGCGAGTGGC---CACCAGAAGTTGGTATCTCC
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M

a score=82302.000000
s hg38.chr15_KI270851v1_alt     80551 14 +    263054 TGGATGCTGCCATT
s panTro5.chr15               9313616 14 +  83230942 TGGATGCTGCCATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73915988 14 -  99763055 GGGTTAGTGCCATT
i panPan2.chr15             C 0 I 39
s gorGor5.CYUI01000141v1        20284 14 -    281578 GGGATACTGCCATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75992710 14 + 121039945 GAGATACTGCCATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8234044 14 + 169600520 GGGCTACTGCCATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297517 14 - 171882078 GGGACACTGCCATT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1471451 14 +   1584492 GGGCTACTGCCATT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7517051 14 +  58131712 GGGTTAGCACCATT
i chlSab2.chr26             C 0 I 29
s saiBol1.JH378108           49813059 14 +  54856640 GGGTTCGTAGCATT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1013401 14 -   1842816 GGGCTATTGTTGTT
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9403173 14 +  14477005 GGGCTACTGCCATT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30967915 14 +  31380117 GAGCTACCATCATT
i otoGar3.GL873533          C 0 I 3
s canFam3.chr9                5837553 14 -  61074082 GGGCTACTGCCATT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             415693 14 -    584178 GGGCTACTGCTATT
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       383974 97 -   3636681 I
e macNem1.NW_012011934v1       364757 97 +   2379783 I

a score=67577.000000
s hg38.chr15_KI270851v1_alt     80565 20 +    263054 TG-----TTTTCCTGTTCCTCTTGG
s panTro5.chr15               9313630 20 +  83230942 TG-----TTTTCCTGTTCCTCTTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25818030 20 +  99763055 TG-----TTTTCCTGTTCCTCTTGG
i panPan2.chr15             I 1552 C 0
s gorGor5.CYUI01000141v1        20298 20 -    281578 TG-----TTTTTCTGTTCCTGTTCG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75992724 20 + 121039945 TG-----TTTTCCTGTTCCTCTTTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8234058 20 + 169600520 TG-----TTTTCCTGTTCTTCTTCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297531 20 - 171882078 TG-----TTTTCCCGTTCTTCTTCG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1471465 20 +   1584492 TG-----TTTTCCTGTTCTTCTTCA
i cerAty1.NW_012002601v1    C 0 C 0
s saiBol1.JH378108           49813073 20 +  54856640 TT-----TGTTCAACTTTCTTTTTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1013415 20 -   1842816 TC-----TTTTCTTTCTCCGTCTCA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9403187 23 +  14477005 TTT--AATTTTCTTCTTCTTTTTTG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30967932 20 +  31380117 TA-----CTTTCTTCTTCTTCTTTG
i otoGar3.GL873533          I 3 C 0
s canFam3.chr9                5837567 23 -  61074082 --TTTAATCTTCCTTTTCTTCTTTG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             415707 23 -    584178 --TTTGATCTTTCTTTTCTTTTTGG
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       383974 97 -   3636681 I
e macNem1.NW_012011934v1       364757 97 +   2379783 I
e chlSab2.chr26               7517065 29 +  58131712 I

a score=44840.000000
s hg38.chr15_KI270851v1_alt     80585 10 +    263054 CTCCTGCTGG
s panTro5.chr15               9313650 10 +  83230942 CTCCTGCTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25818050 10 +  99763055 CTCCTGCTGG
i panPan2.chr15             C 0 I 1175
s gorGor5.CYUI01000141v1        20318 10 -    281578 TTCCTGCTGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75992744 10 + 121039945 CTCCTCCTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8234078 10 + 169600520 CTCCTGCTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297551 10 - 171882078 CTCCTGCTGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1471485 10 +   1584492 CTCCTGCTGG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7517094 10 +  58131712 CTCCTGTACC
i chlSab2.chr26             I 29 C 0
s saiBol1.JH378108           49813093 10 +  54856640 CTCCTTCGCG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1013435 10 -   1842816 CTCGTGTTGG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9403210 10 +  14477005 CTCCTGCAGG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30967952  6 +  31380117 ----TATAAG
i otoGar3.GL873533          C 0 I 2
s canFam3.chr9                5837590  5 -  61074082 CTCCT-----
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             415730 10 -    584178 CTCCTGCAGG
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       383974 97 -   3636681 I
e macNem1.NW_012011934v1       364757 97 +   2379783 I

a score=248791.000000
s hg38.chr15_KI270851v1_alt     80595 47 +    263054 AACACCAGGGCTGTTTCTCTGCCAATATTCTTTTAACTGTCAGAAAC
s panTro5.chr15               9313660 47 +  83230942 AACACCAGGGCTGTTTCTCTGCCAGTATTCTTTTAACTGTCGGAAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73916041 47 -  99763055 AACACTAGGGTTGGTCTGGGGATGATGGTCTGTCAACTGTGGAAAGG
i panPan2.chr15             I 39 C 0
s gorGor5.CYUI01000141v1        20328 47 -    281578 AACTCTAGGGCTGTTTTTCTGCCAGTATTCTTTTAACTGTTGGAAAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75992754 47 + 121039945 AACACCAGAGCTGTTTCTCTGCCAACATTCTCTTAACTGTTGGAAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8234088 47 + 169600520 ACCACCAGGGCTGTTTCTGTGCCAATATTCTTTTAACTGTAGGAAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297561 47 - 171882078 ACCACCAGGGCTGTTTCTCTGCCAGTATTCTTTTAACTGTGGGAAAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1471495 47 +   1584492 ACCACCAGGGCTGTTTCTCTGCCAATATTCTTTTAACTGTGGGAAAG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7517104 47 +  58131712 AACACTAGGGTTGGCCTGGGGATGGTAGTCTCTCAACTGTGGAAAGG
i chlSab2.chr26             C 0 C 0
s saiBol1.JH378108           49813103 47 +  54856640 AACACCAGATCTCTTTCTCATCTGATATTCTTTGAACTGTGGGAAAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1013445 47 -   1842816 AACAGGAGGGCTGTTTCGTTGTTGAAATTCTGTTAACTGTGGGAAAA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9403220 47 +  14477005 AACACCAGGGCTATTCCTCTGCTGATATTCTCTCAGCTGTGGAAAAG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30967960 46 +  31380117 GATGGTAGA-TTGTGCTTCCGCTGAAATTCTAGCAACTGTGGAAAGG
i otoGar3.GL873533          I 2 C 0
s canFam3.chr9                5837595 46 -  61074082 -ACACCAGGGCTGTTCTTCTGCTGATACTCCCTCAACTACAGAAAGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             415740 47 -    584178 AACACCAGGGCTGTTCCTCTGCTGAAATTCTCTTAACTGCAGAAAGG
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       383974 97 -   3636681 I
e macNem1.NW_012011934v1       364757 97 +   2379783 I

a score=216251.000000
s hg38.chr15_KI270851v1_alt     80642 25 +    263054 -AAGAGCAGTAATACTCATGAGAACT
s panTro5.chr15               9313707 25 +  83230942 -AAGAGCAGTAATACTCATGAGAACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73916088 25 -  99763055 -AAGAGCAGTGATACTCATGAGAACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        20375 25 -    281578 -AAGAGCAGTAATATTCATGAGAACC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75992801 25 + 121039945 -AAGAGCAGTAATACTCATGAGAACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8234135 24 + 169600520 -AAGATCAGTAATCCTCATGGAATC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297608 25 - 171882078 -AAGAGCAGTAATACTCATGGGAACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       364854 25 +   2379783 -AAGAGCAGTGATACTCATGAGAACT
i macNem1.NW_012011934v1    I 97 I 149
s cerAty1.NW_012002601v1      1471542 24 +   1584492 -AAGAGCAGTAATCCTCATGGAACC-
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7517151 25 +  58131712 -AAGAGCAGTGATACTCATGAGAACT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       384071 25 -   3636681 -AAGAGCAGTGATACTCATGAGAACT
i manLeu1.NW_012102332v1    I 97 C 0
s saiBol1.JH378108           49813150 25 +  54856640 -AAGAGCAGTAATACTCATGAGAACC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1013492 25 -   1842816 -AAGAGCAGTAATACTCATGAGAACT
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9403267 25 +  14477005 -AAGAGCAGCAATACTCATGAGAACT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30968006 25 +  31380117 -AAAAGCAGTAAGATTCATGAAAATT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5837641 25 -  61074082 -AAAATCAGTGGGGCTCATGAGaact
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             415787 21 -    584178 AAAAAG-----ACACTCATGAGAAGT
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M

a score=30987.000000
s hg38.chr15_KI270851v1_alt     80667 6 +    263054 ATCAGC
s panTro5.chr15               9313732 6 +  83230942 ATCAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73916113 6 -  99763055 ACAAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        20400 6 -    281578 GTCAGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               75992826 6 + 121039945 ATCAGC
i nomLeu3.chr6              C 0 N 0
s rheMac8.chr7                8234159 6 + 169600520 ATCAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297633 6 - 171882078 ATCAGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1471566 6 +   1584492 ATCAGC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7517176 6 +  58131712 ataaac
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       384096 6 -   3636681 CCAAGG
i manLeu1.NW_012102332v1    C 0 C 0
s saiBol1.JH378108           49813175 6 +  54856640 ACCAGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1013517 6 -   1842816 GCAaac
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9403292 6 +  14477005 ACAAGC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30968031 6 +  31380117 ATAAGC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5837666 6 -  61074082 ataaac
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             415808 6 -    584178 CTAAGC
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e macNem1.NW_012011934v1       364879 149 +   2379783 I

a score=575611.000000
s hg38.chr15_KI270851v1_alt     80673  98 +    263054 CCCTGCAGCCACATC-------------------------------------CTCCTTTACAGTTTTTATAAAATACTCT-TATA--CACCATCTGATTTAATGACACCAACAACTGTACAAGGTGTTGTCACAATCA
s panTro5.chr15               9313738  98 +  83230942 CCCTGCAGCCACATC-------------------------------------CTCCTTTACAGTTTTTATAAAATACTCT-TATA--CACCATCTGATTTAATGACACCAACAACTGTACAAGGTGTTGTCACAATCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73916119  95 -  99763055 TCCTACAGTCACATC-------------------------------------CTGCTTTACAGTTTATACTAAATACTCT-TATA--GACCATCTGATTTAATG---CCACCAACTGTAGGAAATGTTGTCACAATCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        20406  98 -    281578 CCCTACAGCCACATC-------------------------------------CTCCTTTACAGTTTTTACAAAATACACT-TACA--CATCATCTGATTTAATGACACCAACAACTGTACAAGGTGTTGTCACACTCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70880132  98 + 121039945 CCCTACAGCCACATC-------------------------------------CTCctttacagtttttacaaaatactct-tata--taccatctgatttaatgataccaacaacagtacaaggtgttgtcacaatca
i nomLeu3.chr6              N 0 C 0
s rheMac8.chr7                8234165  97 + 169600520 CCCTACAGCCACATC-------------------------------------CTCCTTTACAGTTTTTACAAAATACTCT-TATA--CACC-TCTGATTTAATGACACCAACAACTGTACAAGGTGTTGTCACAATCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297639  96 - 171882078 CCCTACAGCCACATC-------------------------------------CTCC-TTACAGTTTTTACAAAATACTC--TATA--CACCATCTGATTTAATGACACCAACAACTGTACAAGGTGTTGTCACAATCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1471572  96 +   1584492 CCCTACAGCCACATC-------------------------------------CTCC-TTACAGTTTTTACAAAATACTCT-TATA--CACC-TCTGATTTAATAACACCAACAACTGTACAAAGTGTTGTCACAATCA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7517182  95 +  58131712 tcctacagtcacatc-------------------------------------ctgctttacagtttatacaaaatactct-tatg--caccgtctgatttaatgccaccaacaactgtgggaag---tGTCACAATCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       384102  91 -   3636681 TCCtacagtca--------------------------------------------gtttacagtttatacaacatactct-cgta--gatgatctgatttaatgccaccaacaactgtacgaggtGTTGTCAAAATCA
i manLeu1.NW_012102332v1    C 0 I 53
s saiBol1.JH378108           49813181  98 +  54856640 CCCGACAGCCACATC-------------------------------------CCCCTTTAAAGTTTTTACCATACAGTCT-TATA--CATTGTCTGATTTAATGCCACCAACAACTGTACAAGTTGTTGCTGCAGTCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1013523  95 -   1842816 ccctacagtca---c-------------------------------------ctacattacagtttttacaaaatgctgt-taca--caccatatgatttaatgtcatcaacaactctataaggtGTGGTCATAATCA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9403298  98 +  14477005 CCCTATAGTTACATC-------------------------------------CTACTTTACAATTTTTCCAAAATAGTCT-TATA--GACCATCTGATTTAATGCCACCAACAACTGTACAAGGTCTTATCACAATCA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30968037 132 +  31380117 CCATATGATTACATCATACTTCATGTGGGAGGGGTCTTTTTTGCTTTATTTTTTACTTTACAGTTTTTACAAAATATATTGTGTA--CAATGTCTGATTTAATGCCACCAACAAC----CAAATGATTGTAACAACCA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5837672  98 -  61074082 ccctgtattcatgtc-------------------------------------caactttgtagtt--tacaatatactcc-catactcgccatctgacttaatgccaccaacagccctacaaggtGTTGTAATTCTCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             415814  57 -    584178 -----------------------------------------------------------------------------CCC-TATA--CGCCATCTGATTTAATGCCACCACCAACCCTACAAG-TGTTATAATTCTCA
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e macNem1.NW_012011934v1       364879 149 +   2379783 I

a score=149298.000000
s hg38.chr15_KI270851v1_alt     80771 32 +    263054 -TTTAGTGACT---CAAAGAGATTGATATCATGG--------------CT
s panTro5.chr15               9313836 32 +  83230942 -TTTAGTGACT---CAAAGAGATTGATATCATGG--------------CT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73916214 32 -  99763055 -CTTAGTGACT---GAGAGAGATTGATACCATGG--------------CT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        20504 32 -    281578 -TTTAGCGACT---GAGAAGGATTGCTATCATGG--------------CT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70880230 32 + 121039945 -tttagtgact---gagagggattgatatcttgg--------------ct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8234262 32 + 169600520 -TTTAGTGACT---GAGAGGGATTGATATCTTGG--------------CT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297735 29 - 171882078 -TTTAGTGACT---GAGAGGGATTGATA---TGG--------------AT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1471668 32 +   1584492 -TTTAGTGACT---GAGAGGGATTCATATCTTGG--------------CT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7517277 32 +  58131712 -CTTAGTGACT---GAGAGGGACTGATACCATGG--------------CT
i chlSab2.chr26             C 0 I 24
s saiBol1.JH378108           49813279 27 +  54856640 -CTCAGTGACT---GAGAGGGACTGATAT-------------------Gg
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1013618 46 -   1842816 -CTTAGTGACT---GAGAGGGATTGATATCATGGCAAAATTTTaaaaaat
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9403396 32 +  14477005 -CTTAGTGACT---GAGAGGGACTGATACCATGG--------------CT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30968169 32 +  31380117 -CTTAGTGACT---AAAATAGACTGTTAACATGG--------------CT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5837770 31 -  61074082 -----GTGACTGCAGAAATAGACTGATAACATGA--------------CT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             415871 32 -    584178 TTTTTAAAAAT---GCCATGACATG-TAACATGG--------------CT
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       384193 53 -   3636681 I
e macNem1.NW_012011934v1       364879 149 +   2379783 I

a score=1996.000000
s hg38.chr15_KI270851v1_alt     80803  8 +    263054 ag------aaaaaa
s panTro5.chr15               9313868  8 +  83230942 ag------aaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73916246  7 -  99763055 -G------AAAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        20536  8 -    281578 AG------AAAAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70880262  8 + 121039945 ag------aaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8234294  8 + 169600520 ag------aaaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297764 14 - 171882078 AGGGaaaaaaaaaa
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1471700  7 +   1584492 AG-------AAAAA
i cerAty1.NW_012002601v1    C 0 C 0
s saiBol1.JH378108           49813306  8 +  54856640 ------aaaaaaaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1013664  8 -   1842816 ------taaaaaaa
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9403428  8 +  14477005 ------TAAAAAAA
i aotNan1.NW_018502759v1    C 0 I 16
s otoGar3.GL873533           30968201  8 +  31380117 --TTTTTTAA----
i otoGar3.GL873533          C 0 I 1
s canFam3.chr9                5837801  7 -  61074082 -------AAGAAAA
i canFam3.chr9              C 0 I 3
s dasNov3.JH564958             415903  8 -    584178 ------TTAAAAAA
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       384193 53 -   3636681 I
e macNem1.NW_012011934v1       364879 149 +   2379783 I
e chlSab2.chr26               7517309 24 +  58131712 I

a score=8428.000000
s hg38.chr15_KI270851v1_alt     80811 18 +    263054 aaagaagaaaagaaa---aAG
s panTro5.chr15               9313876 18 +  83230942 aaagaagaaaagaaa---aAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73916253 12 -  99763055 AAGGCAGTAATG---------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        20544  7 -    281578 AAAAAAG--------------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70880270  7 + 121039945 gaaaaag--------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8234302 18 + 169600520 aaaaaaggaaagaaa---aAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297778 18 - 171882078 gaagaagaaaagaaa---aaG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1471707 18 +   1584492 AAAAAAGGAAAGAAA---AAG
i cerAty1.NW_012002601v1    C 0 C 0
s saiBol1.JH378108           49813314 18 +  54856640 agaaaagaaaagaaa---aaa
i saiBol1.JH378108          C 0 I 7
s cebCap1.NW_016107745v1      1013672 18 -   1842816 aaaaaagaaaagaga---aag
i cebCap1.NW_016107745v1    C 0 I 20
s otoGar3.GL873533           30968210 15 +  31380117 AAGGCAATAATGCAA------
i otoGar3.GL873533          I 1 C 0
s canFam3.chr9                5837811 21 -  61074082 AAGGCAATAATGGAATTTAAA
i canFam3.chr9              I 3 I 5
s dasNov3.JH564958             415911 11 -    584178 -AAAAAAAAAAG---------
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9403436 16 +  14477005 I
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       384193 53 -   3636681 I
e macNem1.NW_012011934v1       364879 149 +   2379783 I
e chlSab2.chr26               7517309 24 +  58131712 I

a score=21438.000000
s hg38.chr15_KI270851v1_alt     80829 17 +    263054 GCGACAGACGAACTTTG
s panTro5.chr15               9313894 17 +  83230942 GCGACACACGAACTTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73916265  6 -  99763055 ---------GAACTT--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        20551 17 -    281578 GCAATACTGGAACTTTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70880277 17 + 121039945 gcgatactgggactttg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8234320 17 + 169600520 GTGATACTGGAACTTTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297796 17 - 171882078 GCGATACTGGAACTTTA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1471725 17 +   1584492 GTGATACTGGAACTTTG
i cerAty1.NW_012002601v1    C 0 C 0
s saiBol1.JH378108           49813339 15 +  54856640 gcaatactggaactt--
i saiBol1.JH378108          I 7 C 0
s otoGar3.GL873533           30968225  3 +  31380117 ------------TTT--
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5837837 15 -  61074082 GCAATAATGGAATTT--
i canFam3.chr9              I 5 C 0
s dasNov3.JH564958             415922  9 -    584178 GCAATAATG--------
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1      9403436 16 +  14477005 I
e cebCap1.NW_016107745v1      1013690 20 -   1842816 I
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       384193 53 -   3636681 I
e macNem1.NW_012011934v1       364879 149 +   2379783 I
e chlSab2.chr26               7517309 24 +  58131712 I

a score=996960.000000
s hg38.chr15_KI270851v1_alt     80846 130 +    263054 AAACTCAGTCTTCTGACTCCAAACTCTGGGGTATTACCAAG-AATCAGCAGCTGCCAGGGACCAAAACCAGAGGCAGAGGTAGAAAA-GTAAACATTAAGTAGGCAGGAAC-TGTATGCCATGTGGTTTAGAG
s panTro5.chr15               9313911 130 +  83230942 CAACTCAGTCTTCTGACTCCAAACTCTGGGGTTTTACCAAG-AATCAGCAGCTGCCAGGGACCAAAACCAGAGGCAGAGGTAGAAAA-GCAAACATTAAGTAGGCAGGAAC-TGTATGCCATGTGGTTTAGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73916271 130 -  99763055 AAACTCAGTCTTCTGACTCTGAGCTCTGGGATTTTGCCCTA-AATCAGCAGCTGCCAGGGACCAAAACCAGAGGCAGAGGTAGAAAA-GCAAATATTAAGTAGGCAGGAAC-TGTGCACTATGTGGTTTAGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        20568 128 -    281578 AAACTCAGTCTTCTGACTCCAAGCTCTGAGGTTTTGCCAAG-AATCAGCAGCTGCCGGGGACCAAAACCAGAGGCAGAGGTAGAAAA-GTAAACATTAAGTAGGCAGGAAC-TGTATGCCCTGTGGTTTA--G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70880294 130 + 121039945 aaactcagtcttctgactccaagctctgaggttttGCGAAG-AATCAGCAGCTGCCAGGGGCCAAAACCAGAGGCAGAGGTAGAAAA-GTAAACATTAAGTAGGCAGGAAC-TGTATGCCGTGTGGTTTAGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8234337 130 + 169600520 AAACTCAGTCTTCTGACTCCAAGCTCTGGGGTTTTGAGAAG-AATCAGCAGCTGCCTAGGACAAAAACCAGAGGCAGAGGTAGAAAA-GTAAACATTAGGTAGGCAGGAAC-CGTATGCCCTGTGGTTTAGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297813 128 - 171882078 AAACTCAGTCTTCTGACTCCAAGCTCTGGGGTTTTGCCAAG-GATCAGCAGCTGCCAGGGACCAAAACCAGAGGCAGAGGTAGAAAA-CTGAACATTAAGTAGGCAGGAAC-TGGTTGCCATGTGGTTT--AG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       365028 127 +   2379783 AAACTCAGTCTTCTGACTCTGAGCTCTGGGGTTTTGCCACA-AATCGGCAGTTTCCAGGGACCAAAACCAGAAGCAGAGGTAAAAAA-GTAAA----AAGTAGGCAGGAAAGTACACACTGTGTGATTTAGAG
i macNem1.NW_012011934v1    I 149 C 0
s cerAty1.NW_012002601v1      1471742 130 +   1584492 AAACTCAGTCTTCTGACTCCAAGCTCTGGGGTTTTGAGAAG-AATCAGCAGCTGCCTAGGACAAAAACCAGAGGCAGAGGTAGAAAA-GTAAACATTAAGTAGGCAGGAAC-CCTATGCCCTGTGGTTTAGAG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7517333 130 +  58131712 AAACTCAGTCTTCTGACTCTGAGCTCTGGGATTTTGCCACA-AATCAACAGTTGCCAGGGACCAAAACCAGAGGCAAAGGCAGAAAA-GCAAATATTACGTTGTCAAGAGC-TGTACACCGTGTGGTTTAGAG
i chlSab2.chr26             I 24 C 0
s manLeu1.NW_012102332v1       384246 127 -   3636681 AAACTCAGTCTTCTGACTCTGAGCTCTGGGGTTTTGCCACA-AATCGGCAGTTTCCAGGGACCAAAACCAGAGGCAGAGGTAGAAAA-GTAAAAAGTAGGCAGGAAAG----TACACACTGTGTGATTTAGAG
i manLeu1.NW_012102332v1    I 53 C 0
s saiBol1.JH378108           49813354 130 +  54856640 aaactcagtcttctgactctaagctctgggatttttccatg-aatcaGCAGCTTCCAGGGAGCAAAACCAGAGGCAGAGATAGAAAACGTCAACATTCAGTAGACAGGACC-TGTTCACTGTAT-GTTTACAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1013710 130 -   1842816 AAACTCATTCCTCTCACTCCAAGCTCTGGGGTTTTGCCATG-AATCAGCAACTGCCAGAGACCAGAACCACAGGCAGAGGCAGGAAA-GTCAACATGAAGTAGACAGGAAC-TGTACACTGTGTGGCTTAGAG
i cebCap1.NW_016107745v1    I 20 C 0
s aotNan1.NW_018502759v1      9403452 130 +  14477005 AAACTCAGTCTTCTGACCCAGAGCTCGGGGGTTTTGCCACA-AATCAGCAGCTACCAGGGGCCAAATCCAGAGGCAGAGGTAGAAAA-GCAAAAATTAAGTAGGCAGGAAC-TATGCACTGTGTGGTTTAGAA
i aotNan1.NW_018502759v1    I 16 C 0
s otoGar3.GL873533           30968228 111 +  31380117 AAATTCAGTCTTCCAACTCTAAGCTCTGGGGTTTAGCCATG-AATCTGCAGT----GTGGGGCAAAACC---------------AAA-GGAAGCATCTAGTAGGCAGGAGC-TGTGCATTGTGTGGCTCAGAG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5837852 125 -  61074082 AAACTTAGTCTTCTGACTCTGAGTTCTGGGGTTATGCCATGAAATCAGCAGGTGCCAAAAGGCAAAACCAGAGGTGGAGGTGGAAAA-G-----GTGGGAAAAATAACATC-TGAGTAATCTG-ACTTTAGAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             415931 128 -    584178 GAATTTAAACTTCTAACTCCAGGCTCTGGAATTCTGCTATA-AATCAGTCACTGTCAGGGG-CAAAACAAGAGATATACATAAAAAA-GT-AACGTTAACTGGTAAAGACC-AATACATCGTGAGATTTAGAA
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M

a score=302725.000000
s hg38.chr15_KI270851v1_alt     80976 44 +    263054 TCATACA----------TCCTCACACGTCTGTTAGTGTGAAGAAGTGCACCAGT
s panTro5.chr15               9314041 44 +  83230942 TCACACA----------TCCTCAAACATCTGTTAGTGTGAAGAAGTGCACCAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73916401 44 -  99763055 TTATTCA----------CCCTCACACGTCTGTCAGTGTTAAAAAGTACACCAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        20696 44 -    281578 TCGTGCA----------TCCTCACACGTCTGTTAGTGTGAAGAAGTGCACCAGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70880424 44 + 121039945 TCAGACA----------TTCTCACACGCCTGTTAGTGTGAAGAAGTGCACCAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8234467 44 + 169600520 TCATACA----------TCCTCACATGTCTGTTAGTGTCAAGAAGTGCACCAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170297941 44 - 171882078 TCATACA----------TCCTCACACATCTGTTAGTGTGAAGAAGTGCACCAGT
i macFas5.chr7              C 0 I 301
s macNem1.NW_012011934v1       365155 44 +   2379783 TCATACA----------TCCTCACACGTCTGTTAGTGTGAAGAAGTACACCACT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1471872 44 +   1584492 TCATACA----------TCCTCACATGTCTGTTAGTGTCAAGAAGTGCACCAGT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7517463 44 +  58131712 TCATACA----------CCCTCACACGTCTGTTAGTGTGAAGAAGTGCACCACT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       384373 44 -   3636681 TCATATA----------TCCTCACATGTCTGTTAGTGTGAAGAAGTACACCACT
i manLeu1.NW_012102332v1    C 0 C 0
s saiBol1.JH378108           49813484 44 +  54856640 TCACACA----------TCCTCACACCTCTGTTGGTGTTAAGAAGTGCGCCAGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1013840 44 -   1842816 TCGTACA----------GCCTCGCACATCTGTTAGTGTTAAGAAGAGCACCAGC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9403582 43 +  14477005 TCATACA----------TCCTCACACGTTTGTTAGTG-TAAGAAATGCACGAAT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30968339 49 +  31380117 TCAGGCAGTGGGGCCCTTCCTTAAACATCTGTGAG-----AGCTGCACACCAGT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5837977 36 -  61074082 TC---CT----------TTCCTACAAATCTGTTA-----AAGCTGCACATTGGT
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958             416059  0 -    584178 C
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M

a score=510835.000000
s hg38.chr15_KI270851v1_alt     81020 69 +    263054 ACCTCTCAAACTCTTATATCAATGTATCCTCATGGCAGAAGGCAG--------CC---------TTTCTGTTAAATCTGGGAATTT
s panTro5.chr15               9314085 69 +  83230942 ACCTCTCAAACTTTTATGTCAATGTGTCCTCGTGGCAGAAGGCAG--------CC---------TTTCTGTTAAATCTGGGAATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73916445 69 -  99763055 ACCTCTCAAACCTTTACATCAATGTCTCCTCATGGCAGAAGGCAG--------CC---------TTTCTGCTAAATCTGGGAATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        20740 67 -    281578 ACCTCTCAAACTTTTCTATCAATGTGTCCTCATGGCAGAAGGCAG--------CC---------TTTCTCTTAAATC--AGAATTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70880468 69 + 121039945 ACCTCTCAAACTTTTATATCAATGTGTCCTCATGGCAGAAGGCAG--------GC---------TTTTTGTTAAATCTGGGAATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8234511 69 + 169600520 ACCTCTCAAACTTTTATATCAATGTGTCCTCATGGCAGAAGGCAG--------CC---------TTTCTGTTAAATCTGGGAATTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170298286 69 - 171882078 ACCTCTCAAACTTTTATATCAATGTGTCCTCGTGGCAGAAGGCAG--------CC---------TTTCTGTTAAATCTGGGAATTT
i macFas5.chr7              I 301 C 0
s macNem1.NW_012011934v1       365199 69 +   2379783 ACCTCTCAAACTTTTACATCAATGTATCCTCAGGGCAGAAGCCAG--------CT---------TTTCTGTTAAATCTGGGAATTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1471916 69 +   1584492 ACCTCTCAAACTTTTATATCAATGTGTCCTCATGGCAGAAGGCAG--------CC---------TTTCTGTTAAATCTGGGAATTC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7517507 69 +  58131712 ACCTCTCAAACTTTTATATTAATGTATGCTCATGGCAGAAGGCCA--------CC---------TTTCTGTGAAATCTGGGAACGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       384417 58 -   3636681 ACCTCTCAAACTTTTACA-----------TCAGGGCAGAAGCCAG--------CT---------TTTCTGTTAAATCTGGGAATTT
i manLeu1.NW_012102332v1    C 0 C 0
s saiBol1.JH378108           49813528 69 +  54856640 ACCGCTCTCACTTTTATATCGATGTGTCGTCATGGCAGAAGGCAG--------TA---------TTTCTGTTAATTCTTGGGATTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1013884 69 -   1842816 ACCTCTCACACTTTTATACCAATGTGTCCTCAAGGCAGAAGGCAG--------CC---------TTTCTGTTAAATCTGGGGATTC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9403625 69 +  14477005 ACCTCTCAAACTTTTACATCAAAGTATCCTCATGGCAGAAGGCAG--------GC---------TTTCTGTTAAATCTAAGAATTT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30968388 78 +  31380117 ACGTCTTAAAAATGTAAGTCAATGTGCCCTAATGGCAGGAGGGTA--------GTGAAAGTATATCCCTAGTGAACTTAGGAAACT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5838013 77 -  61074082 ATTTATCAAACTTTTATATCAACGTATCCTGATGGCAGAAGGCAGTAAAGGCACA---------CACCTAGTGAATGTGGAAACCT
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958             416059  0 -    584178 C
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M

a score=1510372.000000
s hg38.chr15_KI270851v1_alt     81089 217 +    263054 ATCAGAAAGA-------GGACAACCCAAGCCTCATTTCAGAGAGAGGTCTGGTATACTCTTAGAAACCTATGTGACTGTCATCCTTAAGTACATTAATGT-------TTTTT-C-TCTTGATC--TCAAGAGAATCAATGG-aaactg-atgcttcagaaagatgtcccatatgtatcctgtggcACTC-AAAGTACCCCAGGTTTACA---TAATA---TGAGGAAGATTC-AAGCTGTCAAGT
s panTro5.chr15               9314154 217 +  83230942 ATCAGAAAGA-------GGACAACCCAAGCCTCATTTCAGAGAGAAGTCTGGTATACTCTTAGAAACCTATGTGACTGTCATCCCTAAGTGCATTAATGT-------TTTTT-C-TCTTGATC--TCAAGAGAATCAATGG-aaactg-atgcttcagaaagatgtcccatatgtatcctgtggcACTC-AAAGTACCCCAGGTTTACA---TAATA---TGAGGAAGATTC-AAACTGTCAAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73916514 211 -  99763055 AACAGAAAGA-------GGACAACCCAAGCCTCATTTCAGAGAGAAGTCTTGTATATGCTTATAAATCTATGTGACTTTCATCCCTAAGTACATtaatgt-------tttgt-c-------tc--tcaatagaatcaaggg-aaactg-atgcttcagaaagatgccccgtatttatcctgtggcACTC-AAAGTACCCCAGGTTGAGA---TGAGA---TGAGGAAGACTC-AAGCTGTCAAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        20807 217 -    281578 ATCAGAAAGA-------GGACAACCCAAGCCTCATTTCAGAGAGAGGTCTGGTATACTCTTAGAAACCTATGTGACTGTCATCCCTAAGTACATTCATGT-------TTTTT-C-TCTTGATC--TCAAGAGAAtcaaggg-aaactg-atgcttcagaaagatgtcccacatttatcctgtggcACTC-CAAGTACCCAAGGTTGAGA---TAATA---TGAGGAAGATTC-AAGGTGTCAAGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70880537 216 + 121039945 ATCAGAAAGA-------GGACAAACCAAGTCTCATTTCAGAGA-AAGTCCGGTATACTCTTAGAAACCTATGTGATTGTCATCCCTAAGTACATTCATGT-------TTTTT-C-TCTTGATC--TCAAGAGAAtcaaggg-aaactg-atgcttcagaaagatgccccacatttatcctgtggcACTC-AAAGTACCCAAGGTTGAGA---TAGTA---TGAGGAAGATTC-AAGCTGTCAAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8234580 216 + 169600520 ATCAGAAAGA-------GGACAACCCAAGCCTCATTTCAGAGAGAAGTCTGATATACTCTTGGAAATC--TGTGACTGTCATCCTTAAGTACATtaatgt-------ttttt-tctcctgatc--tcaagagaatcaaggg-aaactg-atgcttcagaaagatgtcccatatttgtcctgtggcACTC-AAGGTACCCCAGATTGAGA---TAATA---TGAGGAATATGC-AAGTCATCAAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170298355 217 - 171882078 ATCAGAAAGA-------GGACAACCCAAACCTCATTTCAGAGAGAAGTCTGGTATACTCTTAGAAACCTATGTGACTGTCATCCCTAAGTACATTAATGT-------CTTTT-C-TCTTGATC--TCAAGAGAAtcaaggg-aacctg-atgcttcagaaagatgtcccatatttatcctgtggcactc-aaagtactgcAGGATGAGG---TAATA---TGAGGAAGATTC-AAGCTGTCAAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       365268 207 +   2379783 A----ACAGA-------GGACAACCCAAGCTTCATTTCAGAGAGAAGTCTGGTATACTCTTAGAAATCTATGTGACTATCATACCCAAGAGCATTAATCT-------TTTGT-C-------TC--TCAAAAGAATCAAGGG-aaaact-gtgcttcagaaagatgccccatttttatcctgtggcACTC-AAAGTATCCCAGGTTGAGA---TGAGA---TGAGGAAGATTT-GAGTTGTCAAGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1471985 215 +   1584492 ATCAGAAAGA-------GGACAACCCAAGCCTCATTTCAGAGAGAAGTCTGATATACTCTTGGAAACC--TGTGACTGTCATCCTTAAGTACATtaatgt-------ttttt-c-tcctgatc--tcaagagaatcaaggg-aaactg-atgcttcagaaagatgtcccatatttgtcctgtggcACTC-AAGGTACACCAGGTTGAGA---TAATA---TGAGGAAGATTC-AAGCTATCAAGT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7517576 211 +  58131712 AACAGAAAGA-------GGACAACCCAACCCTCATTTCAGAGAGAAGTCTTGTATATTCTTATAAATTTATGTGACAGTCACCCCTAAGTACATTAATGT-------TTTGT-C-------TC--TCAGTAGACTCAAAGG-aaactg-atgcttcagaaagatgccccgtatttatcctgtggcactc-gaagtaccccAGGTGGAGA---TGACA---TGAGGAAGATTC-AAGCTGTCAAGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       384475 210 -   3636681 AAC----AGA-------GGACAACCCAAGCTTCATTTCAGAGAGAAGTCTGGTATACTCTTAGAAATCTATGTGACTATCATCCC-AAGAGCATTAATCT-------TTTGT-C-------TCTTTCAAAAGAATCAAGGGaaaactgtatgcttcagaaagatgccccatttttatcctgtggcACTC-AAAGTACCCCAGGTTGAGA---TGAGA---TGAGGAAGATTT-GAGTTGTCAAGT
i manLeu1.NW_012102332v1    C 0 C 0
s saiBol1.JH378108           49813597 215 +  54856640 ATCAGCAAGA-------TGACAACCGAAGCCTCATTTCAGAGAGAAGTCTGGTACACTCTTAGAAACCCATGTGACCATCATCCCTAAGTACATTATTGT-------TTTTTCC-TC----TC--TCAAGAGACTCAAGGG-AAACTG-ACTCTTCAGAAAGATGTCCCATAATTTTCCTGTGGCACTCAAAAGTACCCCAGGTTGAGG---TGATA---TGAGGAAGATCC-AAGCTGTCAAGT
i saiBol1.JH378108          C 0 M 100
s cebCap1.NW_016107745v1      1013953 213 -   1842816 ATCAGAAAGA-------GGACAACCCAAGTCTCATTTCAGAGAGAAGTCTGATATACCCTTAGAAATCGATGTGACTGTCATCCCTAAGTACATtaatgt-------ttttg-c-tg----tt--tcaagatactcaaggg-aaactg-atgcctctgaaagatgtcccatgtttatcccatggcATTC-AAAGTAGCCTAAGTTGAGA---TGATA---TGAGGAAGATTC-AAGCTGTCAGTT
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9403694 208 +  14477005 AACAGAAAGA-------GGACAATCCAAGTCTCATTTCAGAAAGAAGTCTGGTGTATTCTCACACATTTATGTGACTGTTATCCCTAAGTACATtaatgt-------tttt--c-tc----tc--tcaagagaatcaaggg-aaactg-atgcttcagaaagatg---catatttatcc-atggcACTC-CAAGTACCCCAGGTTGAGA---TGATA---TGAGAAAGACTG-AAGCTGTCAAGT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30968466 225 +  31380117 AACAGAAAAAGGACAAGGGACAAGCCAAGCATCATTTCAGAGAAAGGTCTATTGTAATCTTACAAGTATATGCAAATGTCATCCCTAAGTATATTCATGT-------TTTTTTC-TC----TC--TCCAGAGAATCAAGCA-AAACTG-AATCTTTGGAAAGCTCTCCCATAGTAATCCTGTGGCACTC-AGAGAACCTCATGTTGAGAAGGTAATG---TGGGGAAGATTCAAAGCGGTGAAGT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5838090 215 -  61074082 AACAGAAAGA-------GGACAATCCAAGCACCATTTCAGAGAGAAGTCTATCATAATCTTACAAATCTACACAAATGTCATCCCT-AGTACATTACTATAAAAGGATTTTT-C-TT----TC--TCAAAAGAATCAAGCA-CAATTG-ATGCTTCAG-------TTCTATA-TTATCCTGTGGCCCTC-AGAACACTCCATGTTGAGA---TGATGATTTGGGGAAGATTCCCACCTATGAAAT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416059  79 -    584178 ---------A-------TCAGATACCAGGACTCTTT----------------------CTTAAATATCTGTAC----------------------------------TTTAT-A-------TC--CCAA-------------GCACTC--------------------------------------TTC-GGAGTACCCTAGGTGAAAT---TCAT-----------------------------
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M

a score=447118.000000
s hg38.chr15_KI270851v1_alt     81306 49 +    263054 TCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAC
s panTro5.chr15               9314371 49 +  83230942 TCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73916725 49 -  99763055 TCAGTTTCCCGAGATCTGTTCCACAGAAGATAAGCAGATCTCACTCCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        21024 49 -    281578 TCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATGTCACTTCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70880753 49 + 121039945 TCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8234796 49 + 169600520 TCAGTTTCCCAAGATCTGTTCCACAGAAGATGAGCAAATCTCACTTCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170298572 49 - 171882078 TCAGTTTCCCGAGATCTATTCCTCAGAAGATGAGCAAATCTCACTTCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       365475 49 +   2379783 TCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1472200 49 +   1584492 TCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7517787 49 +  58131712 TCAGTTTCCCAAGATCCGTTCCACAGAAGATAGGCAGATCTCACTCCAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       384685 49 -   3636681 TCAGTTTCCTAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAG
i manLeu1.NW_012102332v1    C 0 C 0
s cebCap1.NW_016107745v1      1014166 49 -   1842816 TCAATTTCCCAAGATCTGTTCCACAGAAGATGAGCAGATCTCACTCCAG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9403902 49 +  14477005 TCAGTTTCCCAAGACCTGTTCCACAGAAGACAAGCAGATCTCATTCCAA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30968691 49 +  31380117 TCAGTTTCCCAGGATCTGTTCTACAGAAGAGAAGTAGACCTCATTCCAC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5838305 49 -  61074082 TCAGGTTCCAGAGATCAGTTCCACAGAGGATAAGCAGATCTCACTCCAA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416138 46 -    584178 TCAGTTTCCCAGGATCTCTTCCACA---GATTAGCAAATCTCACTTTAA
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e saiBol1.JH378108           49813812 100 +  54856640 M

a score=3154728.000000
s hg38.chr15_KI270851v1_alt     81355 415 +    263054 AGACCACTGACTGA--------------AGGGCAGTCTGGTCCCAGAACCATGGAGAATTAGAATGTGAGGTGGAGAACTCAC-AAAAAATTTGTTAAAA--TCTCTCTGGAAAGTAGAAGCCTGGGAGAAAACC-AAACCAAGTC-----AAACCCAT----TCT-CCAGTTGCCATCCAGAGGTACTGTCAATGTTTTGAGCTC-ACAGGGGAAGTGTAGGCTTTTCCCGCTGTCAGTGTTTATGTTAAGG---------------GAGTGAGGCAGCCTGAAACCTCTTGCTTCTAGGTCC------------CAATCTCCATTCCCCTTCCAGCTGGAAATTTGTGCTGTGACAAGAGGAACCAGAAATGGGGTGGCAATGCTTAGGGGACTGGGTCATAAGATCAAAGGCC-AGTCTT---GCAGTAATGACAGTTACTGGATGGACCGTGACATCACTACATTCCACTC
s panTro5.chr15               9314420 415 +  83230942 AGACCACTGACTGA--------------AGGGCAGTCTGGTCCCAGAACCATGGAGAATTAGAATGTGAGGTGGAGAACTCAC-AAAAAATTTGTTAAAA--TCTCTCTGGAAAGTAGAAGCCTGGGAGAAAACC-AAACCAAGTC-----AAACCCAT----TCT-CCAGTTGCCATCCAGAGGTACTGTCAATGTTTTGAGCTC-ACAGGGGAAGTGTAGGCTTTTCCTGCTGTCAATGTTTATGTTAAGG---------------GAGTGAGGCAGCCTGAAACCTCTTGCTCCTAGGTCC------------CAATCTCCATTCCCCTTCCAGCTGGAAATTTGTGCTGTGACAAGAGGAACCAGAAATGGGGTGACAATGCTTAGGGGACTGGGTCATAAGATCAAAGGCC-AGTCTT---GCAGTAATGACAGTTACTGGATGGACTGTGACATCACTACATTCCACTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73916774 411 -  99763055 A-ACCAGTGACTGA--------------GGGGCACTCTGGTCCCAGAACAATGGAGAATTCAAATCTGAGGTGCAGAACTGAG-AAAAAA--TGTTAAAG--TCTCTCTGGAGAGTAGAAGCCTGGGAGAAAACC-CAAC-----C-----AAACCCAT----TCT-CCCATTGCCACCCAGAGACACTGTCAACGTGTTGAGCTC-ATGGGGGAGGTGTAGGCTTTTCACACTGTCAAGGTCTGTGGTAAGG---------------AAGTCAGGCAGCCTGAAACCTCTCTCTTCTAGGTCCC----------ACAGTCCCCATTCCCCTTCCAGCTGGAAACCCGTGCTGCAACCAGAGGAAACAGAAGT-GGGCAAGAACACTTAGGGGACTGGGTCCTAAGACCAAAGGCC-GGTCTTGTGGTAGTAATGACAGTTTGTAGAGGGACTGTGACGTCACTACATTCTACTC
i panPan2.chr15             C 0 I 79
s gorGor5.CYUI01000141v1        21073 408 -    281578 AGACCACTGACTGA--------------AGGAGAGTCTGGTCCCAGAACCATGGAGAATTAGAATATGAGGTGGAGAACTCAG-AAAAAA-ATGTTAAAA--TCTCTCTGGAAAGTAGAAGCCTGGGAGAAAACC-AAAT-----C-----AAACCCAT----TCT-CTCATTGCCACCCAGAGATACTGTCAATGTTTTGAGTTC-ATGGGGGAAGTGTAGGCTTTTCCCACCGTCAACATCTG---TAAGG---------------GAGTGAGGCAGCCTGGAACCTCTTGCTCCTAGGTCCC----------ATAGTCTCCATTCCCCTTCCAGCTGGAAATTTGTGCTGTGACCAGAGGAACCAGAAACGGGGTGAGAACGCTTAGGGGACTGGGTCGTAAGGTCAAAGGCC-AGTCTT---GCAGTAACGGCAGTTACTAGGTGGGCTGTGACATCACAACATTCCACTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70880802 411 + 121039945 AGACCACTGACTGA--------------AGGGCAGTCTGGTCCCAGAACCATGGAGAATTAGAATAGGAGATGGAGAACTGAG-AAAAAA-ATGTTGAAA--TCTCTCTGGAAAGTAGAAGCCTGGGAGAAAACC-AAAC-----C-----AAACCCAT----TCT-CCCATTGCCACCCAGAGACACTGTCAACGTTTTGAGCTC-ATGGGGGAAGTGTAGGCTTTTCCCACTGTCAATGTCTATGCTATGG---------------GAGTAAGGCAGCCTGAAACCTCTTGCTTCTAGGTCCC----------ATAATCTCCATTCCCTTTGCAGCTGGAAATTTGTGCTGTGACCAGAGGAATCAGAAATGGGGTGACAACGCTTAGGGGACTGGGTCATAAGATCAAAGGCT-GGTCTT---GCAGTAATGACAGTTCCTAGGTGGATTGTGACATCACTACATTCCACTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8234845 412 + 169600520 AGACCACTGACTGA--------------AGGGCAGTCTGGTCCCAGAACCATGGAGAATTAGAATATGAGGTGGAGAACACAG-AAAAAA-AGGTTAAAATCTCTCTCTGGAAAGTAGAAGCCTGGGAGAAAACC-AAAC-----C-----AAACCCAT----CCT-CCCATTGCCACATGGAGGTACGGTCAACGTTCTGCGCTC-ACAGGGGAAGTGTAGGCTTTCCCCCCTGTCATTGTCGATGTTAAGG---------------GAGTGAGACAGCCTGAAACCTCTTGCTCCTAGGTCCC----------ACAGTCTCCATTCCCCTTCCAGCTGCAAATTCGTGCTGTGACCAGAGGAACCAGAAAT-GGGTGAGAATGCTTAGGGGACTGGGTCATAAGATCAAAGGCC-AGTCTT---CCAGTAATGACAGTTCCTAGGCAGACTGTGACATCACTACATTCCACTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170298621 412 - 171882078 AGACCACTGACTGA--------------AGGGCAGTCTGGTCCCAGAACCATGGAGAAATAGAATATGAGGTGGAGAACTCAG-AAAAAA-TTGTTAAAA--TCTCTCTGGAAAGTAGAAAGCTGGGAGAAAACCAAAAC-----A-----AAACCAAT----TCT-CCCATTGCCACCCAGAGATACTGTCAATGTTTTGCGCTC-ACGGGGGAAGTGTAGGCTTTTCCCACTGTCAATGTCGATGTTAAGG---------------GAGTGAGGCAGCCTGGAACCTCTTCCTCCTAGGTCCC----------ATAGTCTCCATTCCCCTTCCAGCTGGAAATTTGCGCTATGACCAGAGGAACGAGAAATGGGGTGAGAATGCTTAGGGGACTGGGTCATAAGATCAAAGGCC-GGTCTT---CCAGTAATGACAGTTTCTAGGTGGATTGTGACATCACCACATTCTACTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       365524 414 +   2379783 AGATCACTGACTGA--------------TGGGAACTGTGGTCCCAGAACCATGGAGAATTCAAATATGAGGTGTAGAACTTAGAAAAAAA-TGGCTAAAG--TCTCTTTGGAGAGTAGAAGCCTGGGAGAAAACC-AAAC-----C-----AAACTCGT----TCT-CCCATTGCCACCCAGAGACACTGTGAACATTTTGAGTTC-ACAGGGGAGGTGTAGCCTTGTCAAACGGTCAATGTCTGTGTTAAGG---------------GACTAAGGCAGCCGGTAGCTTCTCGCTCCTAGGTCAC----------ATCGTCCCTACTCTTCCTCCAGCTGGAAATCTGTGCTGCAACCAGAGGAACCAGAAAAGGGGCAAGAACACTTAGGGTGC-GGGTCCTAAGATCAAAGGCC-TGCCTCGCGGCAGTAATGATAGTTCCTAGAGGGACTGTGACGTCACTACATTCCACTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1472249 411 +   1584492 AGACCACTGACTGA--------------AGGGCAGTCTGGTCCCAGAACCATGGAGAATTAGAATATGAGGTGGAGAACTCAG-AAACAA-ACGTTAAAA--TCTCTCTGGAAAGTAGAAGCCTGGGAGAAAACC-AAAC-----C-----AAACCCAT----CCT-CCCATTGCCACATGAAGGTACGGTCAACGTTTTGCGCTC-ACAGGGGAAGTGTAGGCTTTCCCCCCTGTCAATGTTGATGTTAAGG---------------GAGTGAGACAGCCTGAAACCTCTTGCTCCTAGGTCCC----------ACAGTCTCCATTCCCCTTCCAGCTGCAAATTTGTGCTGTGACCAGAGGAACCAGAAATGGGGTGAGAATGCTTAGGGGACTGGGTCATAAGATCAAAGGCC-AGTCTT---CCAGTAATGACAGTTCCCAGGCAGACTGTGACATCACTACATTCCACTC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7517836 410 +  58131712 CAACCACTGACTGA--------------GGGGCACTCTGGTCCCAGAACAATGCAGAATTCAAATCTGAGGTGGAGAACTCAG-AAACAA--TGTCCGAG--TCTCTCTGGAGAGTAGAAGCCTGGGAGAAAATC--AAC-----T-----AAACCCAT----TCT-CCCGTTGCCACCCAGA-ACACTGCCAATGTGTTGAGCTC-ATGGGGGAGGCGTAGGCTTTTCACACTGTCAACATCTGTGTTAAGG---------------AAGTAAGGCAGCCTGAAACCTCTCTCTCTTAGGTCCC----------ACAGTCCCCAATCCCCTTCCAGGTGGAAACCTGTGCTACAACCAGAGGAACCAG-AAATGGGCAAGAACACTTAGGGGACTGGGTCCTAAGACCAAAGACC-GGTCTCGTGGCAGTAATGACAGTTCCTAGAGGGACTGTGACATCACTACATTCCACTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       384734 413 -   3636681 AGACCACTGACTGA--------------TGGGACCTGTGGTCCCAGAACCATGGAGAATTCAAATATGAGGTGTAGAACTTGG-AAAAAAATGGCTAAAG--TATCTTTGGAGAGTAGAAGCCTGGGAAAAAACC-AAAC-----C-----AAACTCGT----TCT-CCCATTGTCACCCAGAGACACTGTGAACAT-TTGAGTTC-ACAGGGGAGGTGTAGCCTTGTCAGACGGTCAATGTCTGTGTTAAGG---------------GACTAAGGCAGCCCGAAACTTCTCGCTCCTAGGTCAC----------ATCGTCCCTCCTCTTCTTCCAGCTGGAAATCTGTGCTGCAACCAGAGGAACCAGAAAAGGGGCAAAAACACTTAGGGTGC-GGGTCCTAAGATCAAAGGCC-TGCCTCGCGGCAGTAATGATGGTTCCTAGAGGGACTGTGACGTCACTACATTCCACTC
i manLeu1.NW_012102332v1    C 0 C 0
s saiBol1.JH378108           49813913 409 +  54856640 AGACCACTGACTGA--------------AGGGCGGT-TGGTCCCAGAGCTATGGAGAATTCGAATATGAGGTGGAGAACTCAG-AAAAAA-ATGTTAAAG--TCTCTCTGGAGAGTAGAAGCCTGGAAGAAAACC-AAGC-----C-----CAACCCAT----TCT-TCCATTGGCA-CCAGAGATACTGGTAACATTTTGAGCTC-ACAGGGGAAGTATAGGCTTCTCACCCTGTCAGTGTCTATGTTAAGG---------------GAGTGAGGCAGCCTGAAAGCTCTTGCTCCTAGGTCCC----------ATGGTCTCCATTCCCTTTCCAGCTGGAAATGTGTTCTGTGACCAGAGGAACCAGAAATGGGATCAGAACACTTAGGGGACTGGGTTATCACATCAAAGTCA-GGTCTTGTAACAGTAATGACAGTTCATGGAGAGACTGTGATATCACGACATT---CTC
i saiBol1.JH378108          M 100 C 0
s cebCap1.NW_016107745v1      1014215 422 -   1842816 AGGCCACTGACTGA--------------AGGGCAG--TGGTCCCAGAACCATGGAGAATTTGAAGATGAGGTGGAGAACTAAG-AAAGAA-ACGTGAAAG--TCTCTCTGGAGAGCAGAAGCCTGAGAGAAAACC-AAAC-----C-----AAACCCAT----TCT-CCCATTGCCACCCAGAGACACTGTCAACATTTTGAGCTC-ACGAGGGAAGTGTAGGCTTTTCACACTATCAATGTCTATGTTAAGG---------------GAGTGAGGCAGCCTGAAACCTCTTGCTCCTAGGTCCCTCTTGCTCCTAGGTCCCCCATTCCCCTTCCAGTTGGAAATTTGTGCTGGGACCAGAAGAGCCAGAAATGGGATGAAAATGCTTAGAGGACTGGGTCCTAAGATTGAAGGCT-GGTCTTGTAGCAGTAATGACGGTTCCTAGGGAGACCATGACATCTCTACATTCCACTC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9403951 414 +  14477005 AGACCACTGATTAA--------------AGGGCACTCTGGTCCCAGAACCATGGAGAATTCGAATATGAGGTGGAGAAGTCAGAAAAAAA-ACGTTAAAG--TCTCTCTGGAGAGTAGAAGCCTGGGAGAAAACC-AAAC-----C-----CAACCCAT----TCT-CACATTGCCACCCAGAGATACTGCCAACGTTTTGAACTC-ACAGGGGAAGCGCAGGCTTTTCACACTGTCAACGTCTATGTTAAGG---------------GAGTAAGGCAGCCTGAAGCCTCTCCCTCCTAGGTCCC----------ATAGTCCCCATTCCCCTTCCAGCTGGAAATTTATGCTGTGACCAGAGGAACCAGAAACGGGATGAGAACACTTATGGGGCTGGGTCCTAAGATCAAAGGCT-GGTCTAG-AGCACTAATTACGGTTCCGAGGGGGGTTGTGACGTCACTACATTCCACTC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30968740 374 +  31380117 AGAGCACTAAGTG-------------------------------------------------AATATGAGGTAGAGAACTCAG-TAAAAA-ATTTT--AG--TCTCTCTGGAGCGTAGAAACCTGGGAGAAAAGC-AAAC-----C-----CAACCCGT----TCT-CCCATTGCAACCCAGAGATACTGTCAAGGTTTCCAGCTCTACTGGTGAAGTGTAGGCTT-TCGCACTGCCAATATTTAAGTTAAGG---------------GAATAAGG-AGCCTGAAACCTCTCGGTCTTAAATTCC----------ATAGTTCTTAGTCCCCTTCCAATTAGAAATCTGTGCCTTGACCAGAGAAACCAGAAATGGAATG--AACACTCGGGGTATTGGGTCTTAAGATCAAAGGCC-AGGCTCTCGACAGTAATGACAGCTCCGAGGGGGACTGCGAGGTAACTACACTGCACTC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5838354 424 -  61074082 AGAGCACTGATTGATGGGGGGGAGGCGGGGGGGACTCTGGT-CCAGAATCATAAGGAATTAAAATGTGAGGTAGAGAATTCAG-ATTTAATATGTGAAAG--TCTTTCTGGACAGTAGAAACCTAAAAGGAAACC-ATAC-----CAAAGAAAACACAC----TCTCCCCATTGTCACC--AAGGTGTTACCAATGTTCCATGATC-ACTG-----GTGTAG-------------TCAATGTTTAAGGATGGG-----GTACAGTCTAGAGTAAGGGCTCCTGAAACCTCTCCCACCTAGGTCCC----------ATAGTCCCCAGTCCCCTTCAAGCTGGAAATTTGCGCCGCGACCGGAGAAACCGGAAAGGGTATGAAAACACT-GGGAGACTGGGTAGTAAGACCAAACACCGGGGCTCCTGGCGCTAATGACAGTTCCGAGGGGGATTGTGACGTAACTACATTCCCCTC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416184 413 -    584178 AGAGCACTGATTGA--------------GGGGAGTTCTGGTCCCAGAATCACAGGGAATTAGAACGTGAGGCAGAGAACTTA--AAAAAT-TTTTGAAAG--TCTCTCTGGAGAGTAGAAACCTGGGAGAAAACC-AAAG-----C-----AAACAAATAGGCTCTCCCCACTGTCACCCAGTGATGTTGTAAACGTTTCAAGATC-ACGGGTGAAATTTGGGCTTTTCAACCTGTCAATGTCTG-----AGGATGCAGTACAGACCAGCATATGGAAGTTGGAAACCTCT-GGGCCTATGCCCC----------ATAGTCCAGAGGCCCCTTCAGGCTGAAAACCTGCGGGACGACCACAGAAACCGGAAG-GGGATGAACACACA-AGGGGTCTGGGTCGGAAGATCAAAGGCT-GGTCCTGCGGCGATTATGATAGTTAC------------GACGTAAGTGCTTTCCGTCT
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M

a score=24041.000000
s hg38.chr15_KI270851v1_alt     81770 3 +    263054 TTC
s panTro5.chr15               9314835 3 +  83230942 TTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819235 3 +  99763055 TTC
i panPan2.chr15             I 1175 C 0
s gorGor5.CYUI01000141v1        21481 3 -    281578 CTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881213 3 + 121039945 CTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235257 3 + 169600520 CTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299033 3 - 171882078 CTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       365938 3 +   2379783 CTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1472660 3 +   1584492 CTC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518246 3 +  58131712 CTC
i chlSab2.chr26             C 0 I 70
s manLeu1.NW_012102332v1       385147 3 -   3636681 CTC
i manLeu1.NW_012102332v1    C 0 C 0
s saiBol1.JH378108           49814322 3 +  54856640 CTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1014637 3 -   1842816 CCC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404365 3 +  14477005 TTC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30969114 3 +  31380117 CAC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5838778 3 -  61074082 CTC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416597 3 -    584178 CTC
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M

a score=12000.000000
s hg38.chr15_KI270851v1_alt     81773 1 +    263054 C
s panTro5.chr15               9314838 1 +  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819238 1 +  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        21484 1 -    281578 C
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881216 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235260 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299036 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       365941 1 +   2379783 C
i macNem1.NW_012011934v1    C 0 I 80
s cerAty1.NW_012002601v1      1472663 1 +   1584492 C
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012102332v1       385150 1 -   3636681 C
i manLeu1.NW_012102332v1    C 0 I 80
s saiBol1.JH378108           49814325 1 +  54856640 C
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1014640 1 -   1842816 C
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404368 1 +  14477005 C
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30969117 1 +  31380117 C
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5838781 1 -  61074082 C
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416600 1 -    584178 C
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e chlSab2.chr26               7518249 70 +  58131712 I

a score=267619.000000
s hg38.chr15_KI270851v1_alt     81774 66 +    263054 TGGTGAGGGGGAGGGACCACATCAGCATGATGTCCGAGTCACCGCTCCATGATAGGGGAGGGAAAA
s panTro5.chr15               9314839 66 +  83230942 TGGTGAGGGGGAGGGACCACATCAGCATGATGTCCGAGTCACCGCTCCATGATAGGGGAGGGAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819239 66 +  99763055 TGGTGAGGGGGAGGGACCACATCAGCATGATGTCCGAGTCACCGCTCCATGATAGGGGAGGGAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        21485 66 -    281578 TGGTCGGGGGGAGGGACCATGTCAGCACCATGTCCAAGTCGCCGCTCCACGATGGGGGAGGGAAGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881217 66 + 121039945 TGGTCGGGGGGAGGGACCACATCAGCACAATGTCCGAGTTGCTGCTCCACAATGGGGGAGGGAAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235261 66 + 169600520 TGATGAGGGGGAGGGACCACATCAGCGCAATGTCCGAGTTACCACTCCATGATGGGGGAGGGAAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299037 66 - 171882078 AGGTCGGGGGGAGGGACCACATCAGTAGTGTGTCCGAGTCACTGCTCCACAATGGAGGAGGGAAAC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1472664 66 +   1584492 TGATTGGGGGGAGGGACCACATCAGCGCAATGTCCGAGTTACCACTCCACGATGGGGGAGGGAAAC
i cerAty1.NW_012002601v1    C 0 C 0
s saiBol1.JH378108           49814326 62 +  54856640 ----CGGTGGAGGGGACCACATCAGTGCCACACCCGAGGTGCTGCTCCATGATGGGGGAGGGAAAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1014641 62 -   1842816 ----TGGGGGAGGGGACCACATCAAGGAGATGCCTGAGTCACTGCTCCATGATGGGGGAGGGTGGT
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404369 62 +  14477005 ----CGGGGGTGGGGGGGACATCGGCGTGACGTCCGAGTCGCCGCTCTGCGATGGGGGAGGGGAAC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30969118 43 +  31380117 ----------------CTACCT-------ACGACCCACTCTCTGCTCCGCGATGGGGGAGGGGAAC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5838782 43 -  61074082 ----------------CTAC-------CAACGCCCGAGTCGCCGCTCCGCGGTGGGGGAGGGGAAA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416601 43 -    584178 -----------------------TGACCCACCGTCGAGTCGCCTCTCCGCGGTGGGGGAGGGCAGC
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       385151 80 -   3636681 I
e macNem1.NW_012011934v1       365942 80 +   2379783 I
e chlSab2.chr26               7518249 70 +  58131712 I

a score=47823.000000
s hg38.chr15_KI270851v1_alt     81840 8 +    263054 ACAGAGCT
s panTro5.chr15               9314905 8 +  83230942 ACAGAGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819305 8 +  99763055 ACAGAGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        21551 8 -    281578 ACAGGGTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881283 8 + 121039945 ACAGGGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235327 8 + 169600520 ACAAGGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299103 8 - 171882078 ACAGGGTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1472730 8 +   1584492 ACAAGGTT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518319 8 +  58131712 ACAGGATT
i chlSab2.chr26             I 70 C 0
s saiBol1.JH378108           49814388 8 +  54856640 ACAGGGTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1014703 8 -   1842816 GCAGGGCT
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404431 8 +  14477005 ACAGGGCC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30969161 8 +  31380117 CTAGGGCC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5838825 8 -  61074082 GCAGGGCT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416644 8 -    584178 GCAGCGCC
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       385151 80 -   3636681 I
e macNem1.NW_012011934v1       365942 80 +   2379783 I

a score=198738.000000
s hg38.chr15_KI270851v1_alt     81848 21 +    263054 GGGACCCAGGTCCTTGGAGAC
s panTro5.chr15               9314913 21 +  83230942 GGGACCCAGGTCTTTGGAGAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819313 21 +  99763055 GGGACCCAGGTCCTTGGAGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        21559 21 -    281578 GGGACCCAGCTCCTTGGAGAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881291 21 + 121039945 GGGACCCAGCTCCTTGGAGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235335 21 + 169600520 GGGACCCAGGTCCTTGGAGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299111 21 - 171882078 GGGACCCAGGTCCTTAGAGAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       366022 21 +   2379783 GGGACCCAGGTCCTTGGAGAC
i macNem1.NW_012011934v1    I 80 I 66
s cerAty1.NW_012002601v1      1472738 21 +   1584492 GGGACCCAGGTCCTTGGAGAT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518327 21 +  58131712 GGGACCCAGGTCCTTGGAGAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       385231 21 -   3636681 GGGACCCAGGTCCTTGGAGAC
i manLeu1.NW_012102332v1    I 80 C 0
s saiBol1.JH378108           49814396 21 +  54856640 GGGACCCAGGCCTTTGGAGAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1014711 21 -   1842816 GGGACCCAGGTCCTTGGAGAC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404439 21 +  14477005 AGGACCCAGGTCCTTGGAGAC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30969169 21 +  31380117 GGGATCCAGGTCCTTGAAGAT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5838833 19 -  61074082 GGGACCGAGGTCCCTGGAC--
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416652 14 -    584178 CGTACCGAGGTCCC-------
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M

a score=2174.000000
s hg38.chr15_KI270851v1_alt     81869 1 +    263054 A
s panTro5.chr15               9314934 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819334 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        21580 1 -    281578 G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881312 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235356 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299132 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1472759 1 +   1584492 G
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518348 1 +  58131712 G
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       385252 1 -   3636681 A
i manLeu1.NW_012102332v1    C 0 I 65
s saiBol1.JH378108           49814417 1 +  54856640 G
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1014732 1 -   1842816 G
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404460 1 +  14477005 T
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30969190 1 +  31380117 G
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5838852 1 -  61074082 A
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958             416666 0 -    584178 C
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e macNem1.NW_012011934v1       366043 66 +   2379783 I

a score=96404.000000
s hg38.chr15_KI270851v1_alt     81870 22 +    263054 CCAGTGCACACAGCCTAGGGAG
s panTro5.chr15               9314935 22 +  83230942 CCAGTGCACACAGCCCAGGGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819335 22 +  99763055 CCAGTGCACACAGCCCAGGGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        21581 22 -    281578 CCAGCACAAAGAACCCAGGGAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881313 22 + 121039945 CCAGCGCAAAGAGCCCAGGGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235357 22 + 169600520 CCAGTGTAAAGAGCCCACGGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299133 22 - 171882078 CCAGTGCAAAGAGCCCAGGGAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1472760 22 +   1584492 CCAGCGCAAAGAGCCCAGGGAG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518349 22 +  58131712 CAAGCCCAAAGAGCCCAGGGAG
i chlSab2.chr26             C 0 C 0
s saiBol1.JH378108           49814418 21 +  54856640 -CAGCTGAAACAGTCCTGGGAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1014733 22 -   1842816 CCAGCCCAAAGAGCACAAGTAG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404461 22 +  14477005 CGAGCCCGAAGAGCCCAGAGAG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30969191 22 +  31380117 GGAGCCCACAGAGCTCAGGAAG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5838853 19 -  61074082 ---CCGGGACCGGCCTGGAGAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416666  5 -    584178 -----------------GGGAG
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       385253 65 -   3636681 I
e macNem1.NW_012011934v1       366043 66 +   2379783 I

a score=167495.000000
s hg38.chr15_KI270851v1_alt     81892 43 +    263054 GTCCACCTTGAGGCAGCAGGAGGGAAGGGAAGAGTCAGCAGCA
s panTro5.chr15               9314957 43 +  83230942 GTCCACCTTGAGGCAGCAGGAGGGAAGGGAAGAGTCTGCAGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819357 43 +  99763055 GTCCACCTTGAGGCAGCAGGAGGGAAGGGAAGAGTCTGCAGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        21603 43 -    281578 GTCGACCTTGAGGCAGCAGGAGGGGAGGGCAGAGTCTGCAGCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881335 43 + 121039945 GTCCACCTTGAGGCAGCAGGAGGGGAGGGCAGAGTCTGCAGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235379 43 + 169600520 GTTAACCTTGAGGCAGCAGGCGGGGAGGGCAGAGTCTGCAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299155 43 - 171882078 GGTGACCTTGAGGTAGCAGGAGTGGAGGGCAGAGTCTGCAGCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1472782 43 +   1584492 GTTGACCTTGAGGCAGCAGGAGAGGAGGGCAGAGTCTGCAGCA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518371 43 +  58131712 GTCAGGCTTTGGGTGGCGGGAGGTGAGGCCCGAGTATGGAGCA
i chlSab2.chr26             C 0 C 0
s saiBol1.JH378108           49814439 43 +  54856640 GTAGAGGTTGGTGCAGTAGGAGGGGAGCGCAGAGTCTGCAGCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1014755 42 -   1842816 GTTGCAATGGGGG-AGCAGGAGGGGAGGGCAGAGTCTGCAGCA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404483 43 +  14477005 GGCCGGTTTGGGGCGGCAGGAGGTGAGGGCCGAGTCTGGAGCC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30969213 43 +  31380117 AGGCAATTTGGGGCAGTGGGAAGCTAGGACTGAGTTCAGAGCA
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             416671  3 -    584178 ---------------------------------ATC-------
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9                5838872  0 -  61074082 C
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       385253 65 -   3636681 I
e macNem1.NW_012011934v1       366043 66 +   2379783 I

a score=236911.000000
s hg38.chr15_KI270851v1_alt     81935 33 +    263054 GGGAGCCCCAGGATTCACCAG-------------------CCTAAAGTCACC
s panTro5.chr15               9315000 33 +  83230942 GGGAGCCCCAGGATTCACCAG-------------------CCTAAAGTCACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819400 33 +  99763055 GGGAGCCCCAGGATTCACCAG-------------------CCTAAAGTCACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        21646 32 -    281578 GGGAGTCCCAGGAGTCACCAG-------------------CC-AAAGTCACC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881378 33 + 121039945 GGGAGCTCCAGGAGTCACCAG-------------------CCCAAAGTCACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235422 33 + 169600520 GGGAGCCCCAGGAGTCACCAG-------------------CCCAAAGTCACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299198 52 - 171882078 GGGAGACCCAGGAGTCACCAGCGTCCCAAAGTCCCGTAGTCCCAAAGTCACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       366109 33 +   2379783 GGGAGCCCCAGGAGTCACCTG-------------------CCCAAAGTCACC
i macNem1.NW_012011934v1    I 66 C 0
s cerAty1.NW_012002601v1      1472825 33 +   1584492 GGGAGCCCCAGGAGTCACCAG-------------------CCCAAAGTCACC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518414 33 +  58131712 GGGAGCCCCAGGAGTCACCTG-------------------TCCAAAGTGACC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       385318 33 -   3636681 GGGAGCCCCAGGAGTCACCTG-------------------CCCAAAGTCACC
i manLeu1.NW_012102332v1    I 65 C 0
s saiBol1.JH378108           49814482 33 +  54856640 GGGAGCCCCAGGAGTAACCAG-------------------CCCAAAGTCACC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1014797 33 -   1842816 GGGATTCCCAGGAGTCACCAG-------------------CCCAAAGTCACC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404526 33 +  14477005 GGGAGCTCCTGGAGTCTAGGG-------------------CCCAAAGTCACT
i aotNan1.NW_018502759v1    C 0 I 9
s otoGar3.GL873533           30969256 33 +  31380117 AGGACCCCCTGGAGTCATCAG-------------------TCCAAAGTCACC
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             416674 16 -    584178 GGGAGCCCAAGTTGGC------------------------------------
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9                5838872  0 -  61074082 C
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M

a score=77000.000000
s hg38.chr15_KI270851v1_alt     81968 16 +    263054 CAGGGATGACTGGTGA
s panTro5.chr15               9315033 16 +  83230942 CAGGGATGACTGGTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819433 16 +  99763055 CAGGGATGACTGGTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        21678 16 -    281578 CAGGGATGACTGGCGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881411 16 + 121039945 CAGGGATGACTGGCGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235455 16 + 169600520 CAGGGATGACACACGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299250 16 - 171882078 CAGGGATGACTGGCAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       366142 16 +   2379783 CTGGGTCGACTGGTGA
i macNem1.NW_012011934v1    C 0 I 16
s cerAty1.NW_012002601v1      1472858 16 +   1584492 CAGGGATGACACACGA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518447 16 +  58131712 ATGGGGCAACTGGTGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       385351 16 -   3636681 CTGGGTCGACTGGTGA
i manLeu1.NW_012102332v1    C 0 C 0
s saiBol1.JH378108           49814515 16 +  54856640 CAGGGATGGCTGGTGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1014830 16 -   1842816 CAGAAATGACCAATGA
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533           30969289 16 +  31380117 CAGGGGCAACTGGCGA
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             416690  4 -    584178 CGGG------------
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9                5838872  0 -  61074082 C
e aotNan1.NW_018502759v1      9404559  9 +  14477005 I
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M

a score=69080.000000
s hg38.chr15_KI270851v1_alt     81984 14 +    263054 GGGTGGGGTCTGGG
s panTro5.chr15               9315049 14 +  83230942 GGGTGGGGTCTGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819449 14 +  99763055 GGGTGGGGTCTGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        21694 12 -    281578 GGGTGGGGCCTG--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881427 14 + 121039945 GGGCGGGGCCTGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235471 14 + 169600520 GGGCAGGGCCTGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299266 14 - 171882078 GGGTGGGGCCTGGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1472874 14 +   1584492 GGGCAGGGCCTGGG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518463 14 +  58131712 GGGCAGGTTCTGGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       385367 14 -   3636681 GGGCAGGTGCAGGG
i manLeu1.NW_012102332v1    C 0 C 0
s saiBol1.JH378108           49814531 14 +  54856640 GGGTGGGGCCTAGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1014846 14 -   1842816 GGGTGGGGACTGGG
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533           30969305 14 +  31380117 GGGCAGGGGTTGGG
i otoGar3.GL873533          C 0 C 0
e dasNov3.JH564958             416694  0 -    584178 C
e canFam3.chr9                5838872  0 -  61074082 C
e aotNan1.NW_018502759v1      9404559  9 +  14477005 I
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e macNem1.NW_012011934v1       366158 16 +   2379783 I

a score=2797.000000
s hg38.chr15_KI270851v1_alt     81998 4 +    263054 GCTG
s panTro5.chr15               9315063 4 +  83230942 GCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819463 4 +  99763055 GCTG
i panPan2.chr15             C 0 I 126
s nomLeu3.chr6               70881441 4 + 121039945 GCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235485 4 + 169600520 GCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299280 4 - 171882078 GCTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1472888 4 +   1584492 GCTG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518477 2 +  58131712 GC--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       385381 2 -   3636681 GC--
i manLeu1.NW_012102332v1    C 0 C 0
s saiBol1.JH378108           49814545 4 +  54856640 ACTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1014860 1 -   1842816 A---
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404568 4 +  14477005 GCTG
i aotNan1.NW_018502759v1    I 9 C 0
e dasNov3.JH564958             416694 0 -    584178 C
e canFam3.chr9                5838872 0 -  61074082 C
e otoGar3.GL873533           30969319 0 +  31380117 C
e gorGor5.CYUI01000141v1        21706 0 -    281578 C
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e macNem1.NW_012011934v1       366158 16 +   2379783 I

a score=8371.000000
s hg38.chr15_KI270851v1_alt     82002 4 +    263054 TGGG
s panTro5.chr15               9315067 4 +  83230942 TGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73917264 4 -  99763055 TGGG
i panPan2.chr15             I 79 C 0
s nomLeu3.chr6               70881445 4 + 121039945 GGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235489 3 + 169600520 -GGG
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              170299284 3 - 171882078 -GGG
i macFas5.chr7              C 0 I 1
s cerAty1.NW_012002601v1      1472892 3 +   1584492 -GGG
i cerAty1.NW_012002601v1    C 0 I 1
s saiBol1.JH378108           49814549 3 +  54856640 -GGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1014861 1 -   1842816 ---G
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404572 3 +  14477005 -GGG
i aotNan1.NW_018502759v1    C 0 C 0
e dasNov3.JH564958             416694 0 -    584178 C
e canFam3.chr9                5838872 0 -  61074082 C
e otoGar3.GL873533           30969319 0 +  31380117 C
e gorGor5.CYUI01000141v1        21706 0 -    281578 C
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       385383 0 -   3636681 C
e macNem1.NW_012011934v1       366158 16 +   2379783 I
e chlSab2.chr26               7518479 0 +  58131712 C

a score=7098.000000
s hg38.chr15_KI270851v1_alt     82006 1 +    263054 A
s panTro5.chr15               9315071 1 +  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73917268 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               70881449 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235493 1 + 169600520 A
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              170299288 1 - 171882078 A
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011934v1       366174 1 +   2379783 A
i macNem1.NW_012011934v1    I 16 C 0
s cerAty1.NW_012002601v1      1472896 1 +   1584492 A
i cerAty1.NW_012002601v1    I 1 C 0
s chlSab2.chr26               7518479 1 +  58131712 A
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       385383 1 -   3636681 A
i manLeu1.NW_012102332v1    C 0 C 0
s saiBol1.JH378108           49814552 1 +  54856640 A
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1014862 1 -   1842816 A
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404575 1 +  14477005 A
i aotNan1.NW_018502759v1    C 0 C 0
e dasNov3.JH564958             416694 0 -    584178 C
e canFam3.chr9                5838872 0 -  61074082 C
e otoGar3.GL873533           30969319 0 +  31380117 C
e gorGor5.CYUI01000141v1        21706 0 -    281578 C
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M

a score=798638.000000
s hg38.chr15_KI270851v1_alt     82007 121 +    263054 CCCAGGTCCTTGGAGATGTGAGCCCAAAAAGCCCTGGGAGGTCAAGCTTGGGGTGGCAGGAGATGAGGGCCCAGTAAAGGAGCGGGGATC----CCCAGGATTCACCTGCCCAAAGTCACCCTGG
s panTro5.chr15               9315072 121 +  83230942 CCCAGGTCCTTGGAGATGTGAGCCCAAAAAGCCCTGGGAGGTCAAGCTTGGGGTGGCAGGAGATGAGGGCCCAGTAAAGGAGCGGGGAGC----CCCAGGATTCACCTGCCCAAAGTCACCCTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73917269 120 -  99763055 CCCAGGTCCTTGGAGACGTGACCCCAAAGAGCCCCGGGAGGTCAGGCTTGGGGCGGCAGGAGGTAAGGGCAGAGT-ATGGAGTTGGAAGC----CCCAGGAGTCACCTGCTCAAAGTCACCCTGG
i panPan2.chr15             C 0 I 29
s gorGor5.CYUI01000141v1        21706 117 -    281578 ----GCTCCTTGGAGATGAGAGCCCAAAGAGCCCAAGGAGATCAAGCTTGGGGCGGCAGGAGATGAGGGCCCAGTAACGGAGCGGGAAGC----CCCAGGAGTCACCCACCCAAAGTCACCCTAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881450 121 + 121039945 CCGAGGTCCTTGGAGACGCGAGCCCAAAGAGACCAGGGAGGTCGAGTTTGGGGCGGCAGGAGGTGAGGGCCCAGTAATGGAGCGGGAATC----CCCAGGAGTCACCCACCCGAAGTCACCCTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235494 121 + 169600520 CCAAGGTCCCTAGAGATGCAAGCCCAAAGAGCCCAGGGAGGTCAAGCTTGGGGCAGCAGGAGATGAGGGCCCAGTAATGCAGCAGGAAGC----CCCAGGAGTCACCCACCCAAAGTCACCCTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299289 121 - 171882078 CCCAGGTTCTTGGACACGTGAGCCCAAAGAGCCAAGGGAGGTCAAGCTTGGGGCAGCAGGAGATGAGGGCCCATTAATGGAGTGGGGAGC----CCCAGGAGTCACCCGCCCAAAGTCACCCTGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       366175 120 +   2379783 CCCAGGTCCTTGGAGACGTGAGCCCAAAGGGCCCAGGGAGGTCAGTTTTGGGGTAGTAGGAGGTGAGGGTGGAGT-ACAGAGTGGGGAGC----CCTAGGAGTCACCGGCTCAAAGTCACCCTGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1472897 121 +   1584492 CCAAGGTCCCTAGAGATGCAAGCCCAAAGAGCCCAGGGAGGTCAAGCTTGGGGCAGCAGGAGATGAGGGCCCAGTAATGCAGCAGGAAGC----CCCAGGAGTCACCCACCCAAAGTCACCCTGG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518480 120 +  58131712 CCCAGGTCCTTGGAGACATGAGCCCAAAGAGCCCAAGGAGGTCGGGTTTGGGGTAGCAGGAGGTAAGGGCAGAGT-ATGGAGTGGGAAGC----CGTGGGAGTCACCAGCTGAAAGTCACCCTGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       385384 120 -   3636681 CCCAGGTCCTTGGAGACGTGAGCCCAAAGGGCCCAGGGAGGTCAGTTTTGGGGTAGTAGGAGGTGAGGGTGGAGT-ACAGAGTGGGGAGC----CCTAGGAGTCACCGGCTCAAAGTCACCCTGG
i manLeu1.NW_012102332v1    C 0 C 0
s saiBol1.JH378108           49814553 120 +  54856640 CAGAGGTCCTTAGAGACACAAGCCCAAAGAGCCCAGGGAGGTTGATCTTGGGGAGGCAGGAGGTGAGGGCCACGT-ATGGAGTGGAGAGT----CCCATGAGTCACCCGCCCAAAGTCACTCTGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1014863 120 -   1842816 CCCAGGTCCTTAGAGACATGAGCCCACAGAGCCCAGGGAGGTCAGGTTTGGGGCAGGAAAAGGTGAGGACCAAGT-AGGGAGCAGGGAGC----CTCAGGGTTTACACATCCAAAGTCACCCTGG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404576 120 +  14477005 CCGAGGTCCTTGGAGACACCAGCCCAAAGAGCCCAGGGAGGTTGGACCTGGGGCGGCAGGAGGTCAGGGCCGAGT-CTGGAGCGGGGAGC----CCCGGGAGTCACCAGCCCAAAGTCACCcggg
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9                5838872  87 -  61074082 CCCAGGTCC--------------------------------TCCGCTTCTGGGTGGCAGAAGGCTAGGGCCAAAC-CTGGAGCAGGGAGC----CCGGGGAGTCACCAGCCCAAAGTCAccggg-
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416694  95 -    584178 -----------------------------AGCCCAAGGTGGCCCGGTTCTGGGCGGCAGGGGGCGAGGGCTGCTC-CCGGTGCCGGTGCCGGTGCCCCGGGGTCAAGAGCCCAAAGTCACCTGGG
i dasNov3.JH564958          C 0 C 0
e otoGar3.GL873533           30969319   0 +  31380117 C
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M

a score=147276.000000
s hg38.chr15_KI270851v1_alt     82128 18 +    263054 GGTGATTGGTGAGGGCAG
s panTro5.chr15               9315193 18 +  83230942 GGTGATTGGTGAGGGCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819593 18 +  99763055 GGTGATTGGTGAGGGCAG
i panPan2.chr15             I 126 C 0
s gorGor5.CYUI01000141v1        21823 18 -    281578 GGTGATTGGCGAGGGCAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881571 18 + 121039945 GGTGACTGACGAGGGCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235615 18 + 169600520 GGTGATTGGCAAGGGCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299410 18 - 171882078 GGTGACTGCCGAGGGCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       366295 18 +   2379783 GGTCACTGGCGAGGGCAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1473018 18 +   1584492 GGTGATTGGCAAGGGCAG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518600 18 +  58131712 GGTGACTGGTGAGGACAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       385504 18 -   3636681 GGTCACTGGCGAGGGCAG
i manLeu1.NW_012102332v1    C 0 I 216
s saiBol1.JH378108           49814673 18 +  54856640 GATGATTGGCGATGGCAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1014983 18 -   1842816 GGTGATTGGCAAGGGCAG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404696 18 +  14477005 ggcgactggcgagggcgg
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9                5838959 18 -  61074082 ggcggcgggcgagggcgg
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416789 18 -    584178 AGCGACCGGCTAGGGCGA
i dasNov3.JH564958          C 0 C 0
e otoGar3.GL873533           30969319  0 +  31380117 C
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M

a score=15182.000000
s hg38.chr15_KI270851v1_alt     82146 2 +    263054 AG
s panTro5.chr15               9315211 2 +  83230942 AG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819611 2 +  99763055 AG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        21841 2 -    281578 GG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881589 2 + 121039945 GG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235633 2 + 169600520 GG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299428 2 - 171882078 GG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       366313 2 +   2379783 AG
i macNem1.NW_012011934v1    C 0 I 214
s cerAty1.NW_012002601v1      1473036 2 +   1584492 GG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518618 2 +  58131712 GG
i chlSab2.chr26             C 0 C 0
s saiBol1.JH378108           49814691 2 +  54856640 GG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1015001 2 -   1842816 GG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404714 2 +  14477005 gg
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9                5838977 2 -  61074082 gg
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416807 2 -    584178 GG
i dasNov3.JH564958          C 0 C 0
e otoGar3.GL873533           30969319 0 +  31380117 C
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       385522 216 -   3636681 I

a score=41005.000000
s hg38.chr15_KI270851v1_alt     82148 10 +    263054 ACTGGGCTGC
s panTro5.chr15               9315213 10 +  83230942 ACTGGGTTGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819613 10 +  99763055 ACTGGGTTGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        21843 10 -    281578 ACTGGGCTGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881591 10 + 121039945 ACTGGGCTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235635 10 + 169600520 ACTGGGCTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299430 10 - 171882078 ACAGGGCTGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1473038 10 +   1584492 ACTGGGCTGC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518620  7 +  58131712 GCAGGAC---
i chlSab2.chr26             C 0 C 0
s saiBol1.JH378108           49814693 10 +  54856640 ATGGGGCTGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1015003 10 -   1842816 GCTGGGCCCC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404716  7 +  14477005 gttgggc---
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9                5838979 10 -  61074082 gctgggcagc
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416809 10 -    584178 GCTGGGCGGC
i dasNov3.JH564958          C 0 C 0
e otoGar3.GL873533           30969319  0 +  31380117 C
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       385522 216 -   3636681 I
e macNem1.NW_012011934v1       366315 214 +   2379783 I

a score=11267.000000
s hg38.chr15_KI270851v1_alt     82158 4 +    263054 TTGC
s panTro5.chr15               9315223 4 +  83230942 TTGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819623 4 +  99763055 TTGC
i panPan2.chr15             C 0 I 109
s gorGor5.CYUI01000141v1        21853 4 -    281578 TTTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881601 4 + 121039945 TTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235645 4 + 169600520 TTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299440 4 - 171882078 TTGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1473048 4 +   1584492 TTGC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518627 3 +  58131712 -TCA
i chlSab2.chr26             C 0 C 0
s saiBol1.JH378108           49814703 4 +  54856640 TTGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1015013 4 -   1842816 TTGC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404723 3 +  14477005 -ggt
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30969319 4 +  31380117 CTAC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5838989 1 -  61074082 ---c
i canFam3.chr9              C 0 I 2
s dasNov3.JH564958             416819 1 -    584178 ---C
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       385522 216 -   3636681 I
e macNem1.NW_012011934v1       366315 214 +   2379783 I

a score=316810.000000
s hg38.chr15_KI270851v1_alt     82162 55 +    263054 TGAAGGGGTGGGGCTGACTGGCAAAACTT-TGGTGGGGGTAGCCCAGAGGCACCGG
s panTro5.chr15               9315227 55 +  83230942 TGAAGGGGTGGGGCTGACTGACAAAACTT-TGGTGGGGGTAGCCCAGAGGCACCGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73917418 55 -  99763055 TGAGGGGGTTGGGCTGGCTGACAAGATTT-TGGTGTGGGGAGCCCAGAGGCACTGG
i panPan2.chr15             I 29 C 0
s gorGor5.CYUI01000141v1        21857 54 -    281578 TGAAGGGGTGGGGCTGACTGACAAAACTT-TGGTGGGGGTAGCCCA-AGGCACCGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881605 55 + 121039945 TTAAGGGGCAGGGCTGACTGACAAGACTT-TGGTGGGTGGAGCCCAGAGGCGCCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235649 55 + 169600520 TGAAGGGGTGAGGCTGACTGACAAAACTT-TGATGGGGGCAGCCCAGAGGCACTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299444 55 - 171882078 TGAAAGGGTGGGGCTGACTGACAAAACTT-TGGTGGGGGTAGCCCAGAGGCACTGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1473052 55 +   1584492 TGAAGGGGTGAGGCTGACTGACAAAACTT-TGATGGGGGTAGCCCAGAGGCACTAG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518630 55 +  58131712 CGAGGGGGTTGGGCTGGCTCACAAGATTT-TGGCGTGGGGAGCCCAGGGGCACTGG
i chlSab2.chr26             C 0 C 0
s saiBol1.JH378108           49814707 55 +  54856640 TGAAAGGGTGGGGTTTACTGACAAGAGTT-TGGTGGGAGCAGCTCAGAGGCTCCAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1015017 55 -   1842816 TGAAGGGGTGGGGCTGACTGACAAGACTT-TGGTAGGGGGAGCCCAGAGGCACCGG
i cebCap1.NW_016107745v1    C 0 I 170
s aotNan1.NW_018502759v1      9404726 53 +  14477005 tgagggggcggggCTGGCTGACAAGACTT-TGGTGGGGGCAGCCCAGAGGCGCC--
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30969323 54 +  31380117 TGAGGGGGCGGGGCTGGCTGAAAAGACTT-TGGTGAGAGAAGCCAAGCGACGCGG-
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5838992 51 -  61074082 ----ggggcgggACTGGCTGAGACGACTTGGGGTGGGGGGCGCCAAGGGGCGTCA-
i canFam3.chr9              I 2 C 0
s dasNov3.JH564958             416820 49 -    584178 GAGGGGGGCGGGACTGGTTGAGAAGACCA-----GGTGGGCGCCAAGGAGAGCC--
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       385522 216 -   3636681 I
e macNem1.NW_012011934v1       366315 214 +   2379783 I

a score=34731.000000
s hg38.chr15_KI270851v1_alt     82217 23 +    263054 TG-TGGGGGT-CCCAGT------------CCGGTGAA
s panTro5.chr15               9315282 23 +  83230942 TG-TGGGGGT-CCCAGT------------CCGGTGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73917473 21 -  99763055 ----GGGGGTGCCCAGC------------CTGGTGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        21911 24 -    281578 GGTTGGGGGG-ACCAGT------------CCAGTGTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881660 24 + 121039945 GGTTGGGGGG-CCCAGT------------CCGGTGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235704 24 + 169600520 GGTTAGTGGG-CCCAGT------------CCAGTGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299499 23 - 171882078 GG-TGGGGGA-CCCAGT------------CTGGTGTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1473107 24 +   1584492 GGTTAGTGGG-CCCAGT------------CCAGTGTG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518685 20 +  58131712 GG----GGTT-CCCAGC------------CTGATGTG
i chlSab2.chr26             C 0 C 0
s saiBol1.JH378108           49814762 34 +  54856640 GGTTGGGGGG-CCCAGTGATGATATGAGACTG--GTG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9404779 20 +  14477005 ----GGGGGG-CCCAGC------------CCGGTGTG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30969377 18 +  31380117 ------TGCG-GCTAGC------------TCTACGTG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5839043 18 -  61074082 ------CGGG-GCTAGC------------CCCGTGTG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416869 18 -    584178 ----ATGGGG-TTCTCC------------CCAGTG--
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1015072 170 -   1842816 I
e colAng1.NW_012115677v1      3044182 2155 +   3749464 M
e manLeu1.NW_012102332v1       385522 216 -   3636681 I
e macNem1.NW_012011934v1       366315 214 +   2379783 I

a score=209119.000000
s hg38.chr15_KI270851v1_alt     82240 31 +    263054 CCTCGGGAGTGGTATGGACTCTGGCAGCAGT
s panTro5.chr15               9315305 31 +  83230942 CCTCGGGAGTGGTATGGACTCTGGCAGCAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73917494 31 -  99763055 CCTCAGGAGTGGCACAGACTCTGGCAGCAGT
i panPan2.chr15             C 0 I 233
s gorGor5.CYUI01000141v1        21935 31 -    281578 CCTCAGGAGTCGTATAGACTCTGGCAGGGGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881684 31 + 121039945 CCTCAGGAGTGGTATGGACTCTGGCAGTGGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235728 31 + 169600520 CCTCAGGAGTGGTATGGACTCTGGTAGTGGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299522 31 - 171882078 CCTCAGAAGTGGTATGGACTCTGGCAGGAGT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1473131 31 +   1584492 CCTCAGGAGTGGTATGGACTCTGGCAGTGGT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518705 31 +  58131712 CCTCAGCAGTGGCACAGACTCTAGCAGCAGC
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3046356 31 +   3749464 CCTCAGGAGTGATATCGACTCTGGCAGTGGT
i colAng1.NW_012115677v1    M 2155 C 0
s saiBol1.JH378108           49814796 31 +  54856640 CCTCAGGACTGGCATGGACTCTGGCGGCACT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9404799 31 +  14477005 CCTCAGGAGTGGCACGGACTCTGGCCGCGGT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30969395 31 +  31380117 TCTCAGGAGTAGCACAGACTGTGGCCATAGT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5839061 31 -  61074082 CCTCAGGGGCAGCAAAGATTCTGGCCACGGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416887 31 -    584178 CCTCAGGGGCGGCTCAGACTCTGGTCACGGT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1015072 170 -   1842816 I
e manLeu1.NW_012102332v1       385522 216 -   3636681 I
e macNem1.NW_012011934v1       366315 214 +   2379783 I

a score=566745.000000
s hg38.chr15_KI270851v1_alt     82271 94 +    263054 CTTGTCGTTGGAGAGGA-TCT-ATGGCTGGGTTGGGGGTCCGTGACCTGGTGTGTTTTTACCTTTCTCTTGGCTGCTGCCAATTTACTTTGTCGAG
s panTro5.chr15               9315336 94 +  83230942 CTTGTCGTTGGAGAGGA-TCT-ATGGCTGGGTTGGGGGTCCGTGACCTGGTGTGTTTTTACCTTTCTCTTGGCTGCTGCCAATTTACTTTGTCGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819736 94 +  99763055 CTTGTCGTTGGAGAGGA-TCT-ATGGCTGGGTTGGGGGTCCGTGACCTGGTGTGTTTTTACCTTTCTCTTGGCTGCTGCCAATTTACTTTGTCGAG
i panPan2.chr15             I 109 C 0
s gorGor5.CYUI01000141v1        21966 94 -    281578 CTTGTCATCAGAGGGGA-TCT-GTGGCTGGGTTGAGGGGCTATGACCTAGTGCGTTGTTACCTTTTTCTTGGCTGCAGCCAATTTGTTGTGTTGAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881715 94 + 121039945 CTTGTCATCGGAGGGGA-TCT-GTGGCTGGGTTGGGGGGTGATGACCTGGTGCATTTTTACCTTTGTCTTGGCTACAGCCAATTTGCTCTGTCGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235759 94 + 169600520 CTTGTTGTCAGAGGGGA-TCT-GTGGCTGGGTTGGGGGGCCATGACCTGGTACGTTTTTACCTTTTTCTTGGCCTCAGCCAATATGCTCTGTCGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299553 94 - 171882078 CTTGTCATCGGAGGGCA-TCT-GTGACTGGGTTGGGGGGCCATGACCTAGTGTGTTTTTACCTTTTTCTTGGCTGCTGCCAATTTGCTCTCTCGAA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1473162 94 +   1584492 CTTGTTGTCAGAGGCGA-TCT-GTGGCTGGGTTGGGGGGCCATGACCTGGTACGTTTTTACCTTTTTCTTGGCCTCAGCCAATATGCTCTGTCGAG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518736 93 +  58131712 TTGACTGTCCGAGGGCG-CCT-GGGGCTGGGTTGGGGTGCCGCAACCTGGTGCG-TTTTACCTTTTCCTTGGCCTTGGCCAATTTCATCGGTCGGG
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1      3046387 94 +   3749464 CTTGTTGTCAAAGGGGA-TCT-GTGGCTAGGTTGGGGGGCCATGACCTGGTGCATATTTACCTTTTTCTTGGCTAAGGCCAATTTACTCTGTCGAG
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49814827 93 +  54856640 CTTGCCATTGGAGGGGA-TCT-GTGGCTGGTTTGGGGAGCCATGACCTGGTACG-TTTTACCTTTTTTTTGGCTGTTGCCAATTTGGTCTCTCGAG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9404830 93 +  14477005 CCTGCCATAGGAGGGGG-GCT-GGGGCTGGGTAGGGGGGCCGCGACCCGGCGCG-CTTTACCTTTTTCTTCGCTGCGGCCAATTTGCTCTGTCGGG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30969426 94 +  31380117 CCTACCGTGGGAGGGGAGCCT-CGGGCTGGGTCGGGGAGCCGCGACCCGGCGTG-TTTTACCTTTTTCCTGGCCGAGGCCAATTTTTGCTGTCGGG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5839092 92 -  61074082 CCGGCCGTCCGAGGGG--CCT-TTGGCTGGGTCAGGGAGCCGCGACCCGGCACG-TTTTACCTTTTTCTTGGCCGCAGCCAATTTGCTCTGTCGGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416918 93 -    584178 GAGGGGGTTGGAGGGGG-CGTCGGGGCTGGGTC-GGGAGCCTCGACCCAGCGCG-CTTTACCTTTTTCTTCGCTGCAGCCAATTTGCTCTTTCGGG
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1015072 170 -   1842816 I
e manLeu1.NW_012102332v1       385522 216 -   3636681 I
e macNem1.NW_012011934v1       366315 214 +   2379783 I

a score=151182.000000
s hg38.chr15_KI270851v1_alt     82365 20 +    263054 TTTCT------TCTGCCATCGC---------------AGGG
s panTro5.chr15               9315430 20 +  83230942 TTTCT------TCTGCCATCGC---------------AGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819830 20 +  99763055 TTTCT------TCTGCCATCGC---------------AGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        22060 35 -    281578 TTTCT------TCTGCCATCGCAGGTTGGGGAGGGGAAGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881809 20 + 121039945 TTTCT------TCTGCCATCAT---------------GGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235853 20 + 169600520 TTTCT------TCTGCCATTGC---------------AGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299647 20 - 171882078 TTTCT------CCTGCCATGGC---------------AGGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       366529 20 +   2379783 TTTCT------TCTGACATCAT---------------GGGG
i macNem1.NW_012011934v1    I 214 C 0
s cerAty1.NW_012002601v1      1473256 20 +   1584492 TTTCT------TCTGCCATTGC---------------AGAG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518829 20 +  58131712 TTTCT------TCGGACATCAT---------------GGGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       385738 20 -   3636681 TTTCT------TCTGACATCAT---------------GGGG
i manLeu1.NW_012102332v1    I 216 C 0
s colAng1.NW_012115677v1      3046481 20 +   3749464 TTTCT------TCTGCCATCGC---------------AGGG
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49814920 26 +  54856640 ACTCTGTGGACGTTGACATCGC---------------GGGG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018502759v1      9404923 20 +  14477005 TTTCT------TCCGACATCGC---------------GGGG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30969520 20 +  31380117 TTTCT------TCCGACATCCC---------------GTGG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5839184 20 -  61074082 TTTCT------TCCGACATCCC---------------GGGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             417011 20 -    584178 TTTCT------TCCGACATCGC---------------GGAA
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1      1015072 170 -   1842816 I

a score=262427.000000
s hg38.chr15_KI270851v1_alt     82385 28 +    263054 TGGGGAGGG--AG---GCGGGCT----TGGGGCCACA
s panTro5.chr15               9315450 28 +  83230942 TGGGGAGGG--AG---GCGGGCT----TGGGGCCACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819850 28 +  99763055 TGGGGAGGG--AG---GCGGGCT----TGGGGCCACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        22095 28 -    281578 TTGGGAGGG--AG---GAAGGGT----TGGGGTCACA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881829 28 + 121039945 TGGGTAGGG--AG---GCAGGGT----TGGGGCCACG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235873 28 + 169600520 TGGGGAGGG--AG---GCGGGGT----TGGGGCCACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299667 28 - 171882078 TGGGGAGGG--AG---GCGGGGT----TGGGGCCACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       366549 28 +   2379783 TGGGGAGGG--AA---GTGGGGT----TGGGGCCACA
i macNem1.NW_012011934v1    C 0 I 28
s cerAty1.NW_012002601v1      1473276 28 +   1584492 TGGGGAGGG--AG---GCGGGGT----TGGGGCCACA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518849 28 +  58131712 TGGGTAGGG--CG---GTGGGGT----TGGGGCCACA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       385758 28 -   3636681 TGGGGAGGG--AA---GTGGGGT----TGGGGCCACA
i manLeu1.NW_012102332v1    C 0 I 28
s colAng1.NW_012115677v1      3046501 28 +   3749464 TGGGGAGGG--AA---GCGGGAT----TGGGGCCAGG
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49814946 28 +  54856640 TGGGGAGGG--AG---GCAGGGT----TGGGGTCACA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1015242 28 -   1842816 TGGGGAGGG--AG---GTGGGGT----TGGGGCCACA
i cebCap1.NW_016107745v1    I 170 C 0
s aotNan1.NW_018502759v1      9404943 28 +  14477005 CGGGGAGGG--AG---GCGGGGT----TGGGGCCACA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30969540 34 +  31380117 GGGGGAGGG--GGAGAGCGGGAT-ATACGGGAACTCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5839204 27 -  61074082 CGGGGAGGGGTAA---GGGGGGT-------GGCCACA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             417031 25 -    584178 -------AG--GG---GCGGGGTAAGGGGGGGCCACA
i dasNov3.JH564958          C 0 C 0

a score=137273.000000
s hg38.chr15_KI270851v1_alt     82413 28 +    263054 TCAGCAAAATCCCACCAAGCACTG-ATCA
s panTro5.chr15               9315478 28 +  83230942 TCAGCAAAATCCCACCAAGCACTG-ATCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25819878 28 +  99763055 TCAGCAAAATCCCACCAAGCACTG-ATCA
i panPan2.chr15             C 0 I 231
s gorGor5.CYUI01000141v1        22123 28 -    281578 GCAGCAAAATCTCAGTAAGCACCG-ATCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881857 28 + 121039945 TCAGCGAAATCCCAGCGAGCACTA-ATCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235901 28 + 169600520 TCAGCAAAATCCTAGCAAGCACTG-ATCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299695 28 - 171882078 TCAGCAAAATCCCAGCGAGCACTG-ATCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1473304 28 +   1584492 TCAGCAAAATCCCAGTAAGCACTG-ATCA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518877 27 +  58131712 TCAGCACAATCCAGGCGAGGAC-A-ACTA
i chlSab2.chr26             C 0 I 1
s colAng1.NW_012115677v1      3046529 28 +   3749464 TCAGCAAAATCCCAGCGAGCACTG-ATCA
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49814974 26 +  54856640 TCAGCAAA--TCAGGCCAGCACTG-GTAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1015270 28 -   1842816 TCAGCACAATTCAAGGGAGCACAG-GTAA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9404971 29 +  14477005 TCAGCGCAATCCCGGCAACCACTGCGTAA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30969574 27 +  31380117 TCAA-GAGATCCCGGCAACCCCCG-CGAA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5839231 29 -  61074082 TCACCGCGATCCCGGCAACCACCGCGGCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             417056 28 -    584178 TCACCGCGATCCCGGCAGACACTT-CGCA
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012102332v1       385786 28 -   3636681 I
e macNem1.NW_012011934v1       366577 28 +   2379783 I

a score=1358077.000000
s hg38.chr15_KI270851v1_alt     82441 149 +    263054 ACACCTCCAGTCACCTACCAGGTAGCTGTG-CGACTGAGCCAGAGGA-GGCGTAACCAGGGATGCAGTA--G--AAGGCAGAATAGGGGCGTGGCCTTAATGCTCCAAGACCATTGGTTAATGAGAAAGATGAAAGGGAAA--GGGGGCGTGGCCAG
s panTro5.chr15               9315506 149 +  83230942 ACACCTCCAGTCACCTACCAGGTAGCTGTG-CGACTGAGCCAGAGGA-GGCGTAACCAGGGATACAGTA--G--AAGGCAGAATAGGGGCGTGGCCTTAATGCTCCAAGTCCATTGGTTAATGAGAAAGATGAAAGGGAAA--GGGGGCGTGGCCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73917758 148 -  99763055 ACACCTCCAGTCACCT-CTACGTCGCTGTG-TGACTGAGCCAGAGGA-GGCGTAACCAGGGCTGCACTA--G--AATGCAGAATAGGGGTGTGGCCTTAATGCTTGAAGCCCATTGGTCAATGAGAAAGATGAAAGGAAAA--GGAGGTGTGGCCAG
i panPan2.chr15             I 233 C 0
s gorGor5.CYUI01000141v1        22151 148 -    281578 ATGCTTCCAGTCACCTACCAGACAGCTGTG-TGACTGAGCCAGAGGA-GGCGTAACCAGGGCCCCAGTA--G--AATGCGGAATAGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAATGAGAAAGATGAAAGGG-AA--GGGGGCGTGGCCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70881885 151 + 121039945 ACGCTTCCAGTCGCCTACCAGGCAGCTGTG-TGACTGAGCCAGAGGA-GGCATAACCAGGGCCCCAGTA--G--AATGCAGAATAGGGGTGTGGCCTTAATGCTCCAAGCCCATTGGTCAATGACAAAGATGAAAGGGAAAGGGGGGGTGTGGCTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8235929 149 + 169600520 ACACCTCCAGTCACCTACCAGGCAGCTGTG-CGACTGAGCCAGAGGC-AGCGTAACCAGGGCTGCAGTA--G--AATGCCAAATAGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAATTAGAAAGATGAAAGGGAAT--GGGGGCGTGGCTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299723 149 - 171882078 ACACCTCCAGTCACCAACCAGGTTGCTGTG-CGACTGAGCCAGAGGA-GGCGTAACCAGGGCCCCAGTA--G--AATGCGGAATAGGGGTGTGGCCTTAATGCTCCAAGCCCATTGGTCAATGAGAAAGATGAAAGGGAAA--GGGGGTGTGGCCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       366605 149 +   2379783 ACACCTCCAGTCACGTACCACACAGCTGTG-TGACTGAGCCAGAGGA-GGCGTAACCAGAGCCACACTA--G--AATGCAGAATAGGGGCGTGGCCTTAATGCTTGAAGCCCATTGGTCAGTGAGAAAGATGAAAGGGAAG--GGAGGCGGGGCCAG
i macNem1.NW_012011934v1    I 28 C 0
s cerAty1.NW_012002601v1      1473332 148 +   1584492 ACACCTCCAGTCACCTACCAGGCAGCTGTG-CGACTGAGCCAGAGGA-GGCGTAACCAAGGCTGCAGTA--G--AATACCAAATAGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAATTAGAAAGATGAAAGGGAAT--GG-GGCGTGGCTAG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7518905 149 +  58131712 ACACCTCCAGTCACCTACCAGGTAGCTGTG-TGACTGAGCCAGAGGA-GGCGTAACCAGGGCCACACTA--G--AATGCAGAATAGGGGCGTGGCCTTAATGCTTCAAGCCTATTGGTCAATGAGAAAGATGCAAGGGAAA--GGAGGCGTGGCCAG
i chlSab2.chr26             I 1 I 117
s manLeu1.NW_012102332v1       385814 145 -   3636681 ACACCTCCAGTCACGTACCACACAGCTGTG-TGACTGAGCCAGAGGA-GGCATAACCAGGGCCACACTA--G--AATGCAGAATAGGGGCGTGGCCTTAATGCTTGAAGCCCATTGGTC----AGAAAGATGAAAGGGAAG--GGAGGCGGGGCCAG
i manLeu1.NW_012102332v1    I 28 C 0
s colAng1.NW_012115677v1      3046557 149 +   3749464 ACGCCTCCAGTCACCTGCCAGGCAGTTGAC-CAACTGAACCAGAGGA-GGCGTAACCAGGGCTACAGTA--G--AATGCAGGAAAGGGGCGTGGCCTTAATCCTCCAAGCCCATTGGTCAATGAGAAAGATGAAAGGGAAT--TGGGGCGTGGCCAG
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49815000 134 +  54856640 ACAGCTCCAGTCACCTAGCAGGCAGCTGTG-TGACTGAGCCAGGGGA-GGCGTAACCAGGGCAGCACTA--G--AACCTAGAATGGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAATCAGAAAGATGAAGGGGAG-----------------
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107745v1      1015298 150 -   1842816 GCAGCTCCACTCTCCTACCAGGCAGCTGTGTTGACTGAGCCAGAGGA-GGCGTAACCAGGGCCACACTA--G--AATGTAGAATAGGGGCGTGGCCTTCATGCTCCAATCCCATTGGTCAATGAAAAAGATGAAAGGGAAA--GGAGGCATGGCCAG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9405000 144 +  14477005 G-----TCAGTCAGCCACCGCGCAGCTGTG-CGACGGAGCCAGAGGA-GGCGTAACCAGGGCTCCATTA--G--AGGGCAGAATAGGGGCGTGGCCTCAACGATCCAAGCCTATTGATCAATGAGAAAGATGAAGCGGAAA--GGAGGCGTGGCCAG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533           30969601 150 +  31380117 ATTGCTTCCGCTTGCTACCGCGCAGAAGTG-CAACTGAGCCAGAACA-GGCGGGACCAAGGCGAGCCTAGGG--AAACATAAATGTGGGCGTGGCCCCAATGCTCCCGGCCCGTTGGTCAATGAGAACGATGAAAGGAAAA--GG-GGCGTGGCCAG
i otoGar3.GL873533          C 0 I 1
s canFam3.chr9                5839260 148 -  61074082 TCACTTCCGG-CAGTCACCGCGCCGGTGTG-CGACTGAGCCAGAAAG-GGAGGGACCCTAGAGTTTCTA--G--GTAGCAGCTGGTGGGCGTGGCCTCAATGCTCCAATTCTATTGGCTGGTGAGAAAGATGAACGGGGGA--ATGGGCGTGGTCAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             417084 151 -    584178 ATTGCTTCCGCTCGTTACCGCGCCGATGCG-GGTCTGAGCCAGGGAAGGGAGGGACCAGGGCGGTCCTA--GGCAACACAGAATGTGGGCGTGGCCTAAATGCTCCCAGCTCATTGGGCAACGAGAAAGATGAAA-GAAAA--GGGGGCGAGGTCAG
i dasNov3.JH564958          C 0 C 0

a score=4640.000000
s hg38.chr15_KI270851v1_alt     82590 2 +    263054 GC
s panTro5.chr15               9315655 2 +  83230942 GC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73917906 2 -  99763055 AT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        22299 2 -    281578 AC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70882036 2 + 121039945 GC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236078 2 + 169600520 AC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299872 2 - 171882078 AC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       366754 2 +   2379783 GC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012002601v1      1473480 2 +   1584492 AC
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012102332v1       385959 2 -   3636681 GC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115677v1      3046706 2 +   3749464 GC
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1      1015448 2 -   1842816 GC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1      9405144 2 +  14477005 GC
i aotNan1.NW_018502759v1    C 0 N 0
s otoGar3.GL873533           30969752 1 +  31380117 G-
i otoGar3.GL873533          I 1 C 0
s canFam3.chr9                5839408 2 -  61074082 GT
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             417235 2 -    584178 AC
i dasNov3.JH564958          C 0 C 0
e chlSab2.chr26               7519054 117 +  58131712 I
e saiBol1.JH378108           49815134 0 +  54856640 C

a score=5616.000000
s hg38.chr15_KI270851v1_alt     82592 1 +    263054 A
s panTro5.chr15               9315657 1 +  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73917908 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        22301 1 -    281578 A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70882038 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236080 1 + 169600520 A
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              170299874 1 - 171882078 A
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011934v1       366756 1 +   2379783 A
i macNem1.NW_012011934v1    C 0 I 114
s cerAty1.NW_012002601v1      1473482 1 +   1584492 A
i cerAty1.NW_012002601v1    C 0 I 1
s manLeu1.NW_012102332v1       385961 1 -   3636681 A
i manLeu1.NW_012102332v1    C 0 I 116
s colAng1.NW_012115677v1      3046708 1 +   3749464 A
i colAng1.NW_012115677v1    C 0 I 1
s cebCap1.NW_016107745v1      1015450 1 -   1842816 A
i cebCap1.NW_016107745v1    C 0 N 0
s otoGar3.GL873533           30969753 1 +  31380117 A
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             417237 1 -    584178 A
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9                5839410 1 -  61074082 I
e chlSab2.chr26               7519054 117 +  58131712 I
e saiBol1.JH378108           49815134 0 +  54856640 C

a score=-3700.000000
s hg38.chr15_KI270851v1_alt     82593 3 +    263054 TCA-----
s panTro5.chr15               9315658 3 +  83230942 TCA-----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73917909 3 -  99763055 GCA-----
i panPan2.chr15             C 0 I 24
s gorGor5.CYUI01000141v1        22302 3 -    281578 GCA-----
i gorGor5.CYUI01000141v1    C 0 I 1
s nomLeu3.chr6               70882039 3 + 121039945 CCA-----
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7                8236082 2 + 169600520 -CA-----
i rheMac8.chr7              I 1 I 1
s macFas5.chr7              170299876 2 - 171882078 -CA-----
i macFas5.chr7              I 1 I 1
s cerAty1.NW_012002601v1      1473484 2 +   1584492 -CA-----
i cerAty1.NW_012002601v1    I 1 I 1
s colAng1.NW_012115677v1      3046710 2 +   3749464 -CA-----
i colAng1.NW_012115677v1    I 1 I 1
s otoGar3.GL873533           30969754 3 +  31380117 GCG-----
i otoGar3.GL873533          C 0 I 2
s canFam3.chr9                5839411 2 -  61074082 GC------
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             417238 8 -    584178 GCTGTGAG
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012102332v1       385962 116 -   3636681 I
e macNem1.NW_012011934v1       366757 114 +   2379783 I
e chlSab2.chr26               7519054 117 +  58131712 I
e saiBol1.JH378108           49815134 0 +  54856640 C

a score=33503.000000
s hg38.chr15_KI270851v1_alt     82596 22 +    263054 TGTGTCCAGAGGGACCTTTGGC-
s panTro5.chr15               9315661 22 +  83230942 TGTGTCCAGAGGGACCTTTGGC-
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        22306 22 -    281578 CGTGTCCAGAGGGCCCTGTGAC-
i gorGor5.CYUI01000141v1    I 1 C 0
s nomLeu3.chr6               70882043 22 + 121039945 TGTGTCCAGAGGGACCTGTGGC-
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr7                8236085 22 + 169600520 TGTGTCCAGAGGGACTCATGGC-
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              170299879 22 - 171882078 CATGGCCAGAGGGACCTGTGGC-
i macFas5.chr7              I 1 C 0
s cerAty1.NW_012002601v1      1473487 22 +   1584492 TGTGTCCAGAGGGACTCATGGC-
i cerAty1.NW_012002601v1    I 1 C 0
s colAng1.NW_012115677v1      3046713 22 +   3749464 TGTGTCCAGAGGGACCTGTGGC-
i colAng1.NW_012115677v1    I 1 C 0
s saiBol1.JH378108           49815134  5 +  54856640 -GTGTC-----------------
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533           30969759 12 +  31380117 ----------GGGACCCAGAGG-
i otoGar3.GL873533          I 2 I 5
s canFam3.chr9                5839413 15 -  61074082 CGCGAGCAGGTGGAG--------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             417246 19 -    584178 GGTGACCAGAAGG----GTGGAG
i dasNov3.JH564958          C 0 C 0
e panPan2.chr15              73917912 24 -  99763055 I
e manLeu1.NW_012102332v1       385962 116 -   3636681 I
e macNem1.NW_012011934v1       366757 114 +   2379783 I
e chlSab2.chr26               7519054 117 +  58131712 I

a score=206540.000000
s hg38.chr15_KI270851v1_alt     82618 54 +    263054 TCACAAGGAAAGCTGCCCAG----GCAACCACTGTCCCCACCCACCCTAAGAGAGGGG
s panTro5.chr15               9315683 54 +  83230942 TCACAAGGAAAGCTGCCCAT----GCAACCACTGTCCCCACCCACTCTAAGAGAGGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73917936 54 -  99763055 TCACAAGGAAAGCTGCCTAT----GCAACCGCTGTCCCCGCCCACTCCAGGAGAGGGG
i panPan2.chr15             I 24 I 36
s gorGor5.CYUI01000141v1        22328 55 -    281578 TCACAAGGAAAGCTGCCCATG---GCAACCGCTCTCCCCACCCACTCTAAGAGAGCGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70882065 32 + 121039945 TCACAAGGAAAGCTGCCCAT----GCAACCGCTGCC----------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236107 33 + 169600520 TCACAAGGAAAGCTGCCCAT----GCAACTGCTGTCC---------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299901 53 - 171882078 TCACAAGGAAATCTGCCCAC----GCAACCGCTGTCCCCACCCAGTCTAAGA-CGGGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1473509 54 +   1584492 TCACAAGGAAAGCTGCCCAT----GCAACTGCTGTCCCCACCCACTCTAAGAGAGGGG
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3046735 54 +   3749464 TCACAAGGAAAGCTGCCCAT----GCAACCACTGTCCCCACCCACTCTGAGAGAGGGA
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49815139 52 +  54856640 --ACAAGGAAAGCCGCACGT----GCAACTGCTGTCCCCGCCCACTCCGAGAGAGGGG
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533           30969776 58 +  31380117 TCACCACGTCAGCTGCGCACGTGCGCAGCCGCTGTCCCTGCCCACTTTGGGGAGACGA
i otoGar3.GL873533          I 5 C 0
s canFam3.chr9                5839428 54 -  61074082 TGACAATGAAAGCTGCGCGC----GCAGCCTCTGGCCCCGCCCACTTCGGGGCGGGGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             417265 54 -    584178 TCACAATGCAGGCTGCGCGC----GCAGCCGCTGTCACCGCCCACATTGGGGGAGGGG
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012102332v1       385962 116 -   3636681 I
e macNem1.NW_012011934v1       366757 114 +   2379783 I
e chlSab2.chr26               7519054 117 +  58131712 I

a score=4737.000000
s hg38.chr15_KI270851v1_alt     82672  7 +    263054 -AGAGGCC--------
s panTro5.chr15               9315737  7 +  83230942 -AGAGGCC--------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25820137  7 +  99763055 -AGAGGCC--------
i panPan2.chr15             I 231 C 0
s gorGor5.CYUI01000141v1        22383  7 -    281578 -AGAGGCC--------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70882097  2 + 121039945 ------CT--------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236140  2 + 169600520 ------CC--------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299954  7 - 171882078 -AGAGGCC--------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1473563  7 +   1584492 -AGAGGTT--------
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3046789  7 +   3749464 -AGGGGCT--------
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49815191  7 +  54856640 -AGGGGCT--------
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533           30969834  7 +  31380117 -GGGGGCT--------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9                5839482  7 -  61074082 -CGGGACC--------
i canFam3.chr9              C 0 N 0
s dasNov3.JH564958             417319 16 -    584178 CAAAGGCGGTTTCTCC
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012102332v1       385962 116 -   3636681 I
e macNem1.NW_012011934v1       366757 114 +   2379783 I
e chlSab2.chr26               7519054 117 +  58131712 I

a score=1861.000000
s hg38.chr15_KI270851v1_alt     82679 1 +    263054 G
s panTro5.chr15               9315744 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25820144 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        22390 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70882099 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236142 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299961 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1473570 1 +   1584492 G
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3046796 1 +   3749464 G
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49815198 1 +  54856640 G
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533           30969841 1 +  31380117 G
i otoGar3.GL873533          C 0 N 0
s dasNov3.JH564958             417335 1 -    584178 G
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012102332v1       385962 116 -   3636681 I
e macNem1.NW_012011934v1       366757 114 +   2379783 I
e chlSab2.chr26               7519054 117 +  58131712 I

a score=63582.000000
s hg38.chr15_KI270851v1_alt     82680 24 +    263054 CCAAC-TCTGGGAGAGGGGCAGGGC
s panTro5.chr15               9315745 24 +  83230942 CCAAC-TCTGGGAGAGGGGCAGGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25820145 24 +  99763055 CCAAC-TCTGGGAGAGGGGCAGGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        22391 24 -    281578 CCCAC-TCTGGAAGAGAAGAGGGGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70882100 24 + 121039945 CCCAC-TCTGGGAGAGGGGAGGGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236143 22 + 169600520 CCCAC-TCTAGGAGAACGGAGGG--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170299962 24 - 171882078 CCCAC-TCTGGGAGAGGGGAGGGGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1473571 22 +   1584492 TCCAC-TCTAGGAGAACGGAGGG--
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3046797 24 +   3749464 CCCAA-TCTCACAGAGGGAAGGGGC
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49815199 24 +  54856640 CCCAC-TCCGGGAGTGGGGAGGGGT
i saiBol1.JH378108          C 0 C 0
s dasNov3.JH564958             417336 25 -    584178 CCCACGTCAGGGGGCGGGGCTAGGC
i dasNov3.JH564958          C 0 N 0
e manLeu1.NW_012102332v1       385962 116 -   3636681 I
e macNem1.NW_012011934v1       366757 114 +   2379783 I
e chlSab2.chr26               7519054 117 +  58131712 I

a score=58313.000000
s hg38.chr15_KI270851v1_alt     82704 22 +    263054 CGGCTTTTGCTTTAAAAGCT-------TT
s panTro5.chr15               9315769 22 +  83230942 CGGCTTTTGCTTTAAAAGCT-------TT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25820169 22 +  99763055 CGGCTTTTGCTTTAAAAGCT-------TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        22415 29 -    281578 CGGCTTTTGCTTTAAAAGCTTTAAAACTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70882124 21 + 121039945 CAGCTTTTGCTTTAAAA-TT-------TT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236165 14 + 169600520 --------GCTTTAAAAGCT-------TT
i rheMac8.chr7              C 0 I 7
s macFas5.chr7              170299986 22 - 171882078 TGGCTTTTGCTTTAAAAGCT-------TT
i macFas5.chr7              C 0 I 7
s cerAty1.NW_012002601v1      1473593 14 +   1584492 --------GCTTTAAAAGCT-------TT
i cerAty1.NW_012002601v1    C 0 I 7
s colAng1.NW_012115677v1      3046821 22 +   3749464 TGGCTTTTGTTTTAAAAGCT-------TT
i colAng1.NW_012115677v1    C 0 I 17
s saiBol1.JH378108           49815223 22 +  54856640 CGGCTTTTCCTTTAAAAACT-------TT
i saiBol1.JH378108          C 0 C 0
e manLeu1.NW_012102332v1       385962 116 -   3636681 I
e macNem1.NW_012011934v1       366757 114 +   2379783 I
e chlSab2.chr26               7519054 117 +  58131712 I

a score=30598.000000
s hg38.chr15_KI270851v1_alt     82726 13 +    263054 TAAAAAATATATA
s panTro5.chr15               9315791 13 +  83230942 TAAAAAATATATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25820191 13 +  99763055 TAAAatatatata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        22444 13 -    281578 TAAAAAATATATG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70882145 13 + 121039945 TAAAAatgttatg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236186 11 + 169600520 --AAAAATATAtg
i rheMac8.chr7              I 7 C 0
s macFas5.chr7              170300015 13 - 171882078 TAAAAAATATATG
i macFas5.chr7              I 7 C 0
s cerAty1.NW_012002601v1      1473614 13 +   1584492 TAAAAAATATAtg
i cerAty1.NW_012002601v1    I 7 C 0
s saiBol1.JH378108           49815245 12 +  54856640 -AAAAAATATATG
i saiBol1.JH378108          C 0 C 0
e colAng1.NW_012115677v1      3046843 17 +   3749464 I
e manLeu1.NW_012102332v1       385962 116 -   3636681 I
e macNem1.NW_012011934v1       366757 114 +   2379783 I
e chlSab2.chr26               7519054 117 +  58131712 I

a score=381609.000000
s hg38.chr15_KI270851v1_alt     82739 133 +    263054 TGTGTATACTTTATATATA------tgtgtgtctgtgtgtgtgtacctgtgtgtTCCTCCAGAGCTGTCTTCATGATCCAGCTTCTATGCAAGGTCTATGATTTTGGCCTATATTTTTCA--------TAGAGTACAAAAATTACC-A
s panTro5.chr15               9315804 133 +  83230942 TGTGTATACTTTATATATA------tgtgtgtctgtgtgtgtgtacctgtgtgtTCCTCCAGAGCTGTCTTCATGATCCAGCTTCTATGCAAGGTCTATGATTTTGGCCTATATTTTTCA--------TAGAGTACAAAAATTACC-A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25820204 133 +  99763055 tgtgtatactttatatata------tgtgtgtctgtgtgtgtgtacctgtgtgtTCCTCCAGAGCTGTCTTCATGATCCAGCTTCTATGCAAGGTCTATGATTTTGGCCTATATTTTTCA--------TAGAGTACAAAAATTACC-A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        22457 141 -    281578 TGTGTATACTTTATATATA------TGTGTGTCCGTGTGTGTGTATCTATGTTTTTCTCCATAGCTGTCTTCATTATCCAGCTTCTATGCAAGGTCTATGATTTTGGCCTATATTTTTCATCTTTGATTACAGTACAAAAATTACC-A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70882158 147 + 121039945 tgtgtatactttatatatatatatgtgtgtttctgtgtatgtgtatctatgtgtTCCTCCAGAGCTGTCTTCATTACCCAGCTTCTATGCAAGGTCTATGATTTTGGCCTATATTTTTCATCTTCAAATACAGTAAAAAAATTACC-A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236197 138 + 169600520 tgtgtgtactttatatata------tgtgtgtccgtgtgtgtgtctatgtTTA--CTTCCAGATCTGTCTTCATTACCCAGTTTCTATGCAAGATCTGTGATTCTGGCCTATATTTTTCATCTTCAAATACAGTACAAAAATCCCA--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170300028 132 - 171882078 TGTGTGTACTTTATATGTG------TGTTTTTCAGTTTTTGTGTATGTATCTGTTCCTCCAGAGTTATCTTCATGACCCAGCTTCTATTCAAGGTCTATGATTTTGGCCTATATTTTTC--------ATACAGCACAAAAATTACA--
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1473627 138 +   1584492 tgtgtgtactttatatata------tgtgtgtccgtgtgtgtgtctatgtTTA--CTTCCAGATCTGTCTTCATTACCCAGTTTCTATGCAAGATCTGTGATTTTGGCCTATATTTTTCATCTTCAAATACAGTACAAAAATCCCA--
i cerAty1.NW_012002601v1    C 0 C 0
s colAng1.NW_012115677v1      3046860 135 +   3749464 TGTGTATACTTtata--ta------tgtgtgtctgtgtgtgtgtatgtATT----CCTCCAGAGCTGTCTTCATTATCCAGATTCTATGCAAGGTCTTTGATTTTGATCTGTATTTTTCATCTTCAAATACAGTACAAAAATTACCA-
i colAng1.NW_012115677v1    I 17 C 0
s saiBol1.JH378108           49815257 137 +  54856640 TCTGTATACTTTACATATA------CGTGTATCTGTCTGTCTCTAAGTGTG----CCTTCAAAGCTGTCTTCGTTATCCAGCTTCAACACAAAGTCTATGATTTTGGCCTCTATTTTTCATCTTCAAATGGAGTACAAGAATTGCT-A
i saiBol1.JH378108          C 0 C 0
e manLeu1.NW_012102332v1       385962 116 -   3636681 I
e macNem1.NW_012011934v1       366757 114 +   2379783 I
e chlSab2.chr26               7519054 117 +  58131712 I

a score=4190.000000
s hg38.chr15_KI270851v1_alt     82872 1 +    263054 G
s panTro5.chr15               9315937 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25820337 1 +  99763055 G
i panPan2.chr15             C 0 I 485
s gorGor5.CYUI01000141v1        22598 1 -    281578 G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70882305 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236335 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170300160 1 - 171882078 A
i macFas5.chr7              C 0 I 1
s cerAty1.NW_012002601v1      1473765 1 +   1584492 G
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7519171 1 +  58131712 G
i chlSab2.chr26             I 117 C 0
s colAng1.NW_012115677v1      3046995 1 +   3749464 G
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49815394 1 +  54856640 G
i saiBol1.JH378108          C 0 C 0
e manLeu1.NW_012102332v1       385962 116 -   3636681 I
e macNem1.NW_012011934v1       366757 114 +   2379783 I

a score=683833.000000
s hg38.chr15_KI270851v1_alt     82873 116 +    263054 TATTACCTTAACCGAGATACAGATCCTATGAAAATGGAAAATCCATAGCATGCTTGATGATTACTGAAGCAGACTATATTATCCAACATTCCAATAAGATAAAATAATCACAATGA
s panTro5.chr15               9315938 116 +  83230942 TATTACCTTAACCGAGATACAGATCCTATAAAAATGGAAAATCCATAGCATGCTTGATGATTACTGAAGCAGACTATATTATCCAACATTCCAATAAGATAAAATAATCACAATGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73918026 111 -  99763055 TATTACCTCAATTGAGGTACAAGTCCTATTAAAATGGAAATTTTATAGTGTGCTTGATGATTGATAAAGCAGACTTTATTATCCAACATTCCAGTAAG-----ATAATCACAATGT
i panPan2.chr15             I 36 C 0
s gorGor5.CYUI01000141v1        22599 115 -    281578 TATTACCTTAACTGAGATACAGATCCTATAAAAATGGAAAATGCATAGCATGCTTGATGATTAATGAAGCAGACTATATTATCCAACATTCTAATAAGATAAAAT-ATCACAATGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70882306 116 + 121039945 TACTACCTTAACTGAGATACAGATCCTATAAAAATGGAAAATCCATAGCATGCTTGATCATTAATGAAGCAGACTATATTATCCAACATTCCAATAAGATAAAATAATCACAATGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236336 116 + 169600520 TATTACCTTAATTGAGATACAAAGCCTATAAAAATGGAAAATCCATAGCATGCTTGATGATTAATGAAGCAGACTATATTATCCAACATTCCAAAAAGATAAAATAATCACAATGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170300162 116 - 171882078 TATTACGTTAACTGAGATACAGATCATATAAAAATGGAAAATCCATAGCATGCTTGATGGTTAATGAAGCAGACTATATTATTCAACATTCCAATAAGATAAAATAATCACAATGG
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011934v1       366871 116 +   2379783 TATCACCTTAATTGAGGTATAGATCCAATGAAAATGGAAAATTTACAGTGTTCTTGATGATTAATGAAGCAGACTATATTATCCAACATTCCAATAAGATAAAATAATCACAATGA
i macNem1.NW_012011934v1    I 114 I 36
s cerAty1.NW_012002601v1      1473766 116 +   1584492 TATTACCTTAATTGAGATACAAAGCCTATAAAAACGGAAAATCCATAGCATGCTTGATGATTAATGAAGCAGACTATATTATTCAACATTCCAAAAAGATAACATAATCACAATGA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7519172 115 +  58131712 TATTACCTCAATTGAGGTACAAATCCTATTAAAATGGAAATTTTATAGTGTGCTTGATGATTGATAAAGCAGACTATATTATCCAACATTCCACTAAGATAAAG-AATCACAATGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       386078 116 -   3636681 TATCACCTTAATTGAGGTACAAATCCAATGAAAATGGAAAATTTACAGTGTTCTTGATGATTAATGAAGCAGACTATATTATCCAACATTCCAATAAGATAAAATAATCACAATGA
i manLeu1.NW_012102332v1    I 116 C 0
s colAng1.NW_012115677v1      3046996 116 +   3749464 TATTGCCTTAACTGAGATACAGAGCCTATAAAAATGGAAAATCTATAGCATGCTTGATGGTTAATGAAGCAGACTATATTATCCAACATTCCAATAAGATAAGATAATCACAATGA
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49815395 116 +  54856640 TATTACCTTAACTGAGATACAAACCCTATAAAAATGGAAAATCCATAGCATGCCTGATGATTAGTAAAGCAGACTATGTTACCCAACATTCCAGCAAGATAAAATAATCACAATGA
i saiBol1.JH378108          C 0 C 0

a score=42249.000000
s hg38.chr15_KI270851v1_alt     82989 11 +    263054 CTTCTCTTTTT-
s panTro5.chr15               9316054 11 +  83230942 CTTCTCTTTTT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73918137 11 -  99763055 TTTCTCTTTTT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        22714 11 -    281578 TTTCTCTTTTT-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70882422 10 + 121039945 -TTCTCTTTGG-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236452 11 + 169600520 TTTCTCTATTT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170300278 11 - 171882078 TTTCTCTCGTT-
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1473882 11 +   1584492 TTTCTCTATTT-
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7519287 11 +  58131712 TTTCTCTTTTT-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       386194 11 -   3636681 TTTCTCTTTTT-
i manLeu1.NW_012102332v1    C 0 I 9659
s colAng1.NW_012115677v1      3047112 11 +   3749464 TTTCTCTTTTT-
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49815511 11 +  54856640 -TTCACCTTTTT
i saiBol1.JH378108          C 0 C 0
e macNem1.NW_012011934v1       366987 36 +   2379783 I

a score=139770.000000
s hg38.chr15_KI270851v1_alt     83000 36 +    263054 TGGAAAAATGTTTCTCTTATTCTCCTACGTTATTGT
s panTro5.chr15               9316065 36 +  83230942 TGGAAAAATGTCTCTCTTATTCTCCTACGTTATTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73918148 35 -  99763055 TGGAAAAAC-TTTCTCTTATTCTCCTACATTAGTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        22725 36 -    281578 TGGAAAAATGTTTCTCTTATTCTCCTACGTTTTCGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70882432 36 + 121039945 TGGAAAAACGTTTATCTTATTCTCCTATGTTATTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236463 33 + 169600520 TGGAAAAACGTTTCTC---TTCTTCTATGTTATTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170300289 36 - 171882078 TGGAAAAATGTTTCTCTTATTCTTCTATGTTATTGT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1473893 33 +   1584492 TGGAAAAACGTTTCTC---TTCTTCTATGTTATTCT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               7519298 35 +  58131712 TGGAAAAAC-TTTCTCTGATTCTCCTACATTATTGT
i chlSab2.chr26             C 0 N 0
s manLeu1.NW_012101289v1        27743 33 +    138091 TGGAAAAACGTTTCTC---TTCTTCTATGTTATTCT
i manLeu1.NW_012101289v1    I 9878 C 0
s colAng1.NW_012115677v1      3047123 36 +   3749464 TGGAAAAACATTTCTTTTATTCTCTTACGTTATTGT
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49815522 28 +  54856640 TGGAAAAACGTTTCTC--------CTGCATTAttgt
i saiBol1.JH378108          C 0 C 0
e macNem1.NW_012011934v1       366987 36 +   2379783 I

a score=8661.000000
s hg38.chr15_KI270851v1_alt     83036 4 +    263054 GAAG
s panTro5.chr15               9316101 4 +  83230942 GAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73918183 4 -  99763055 TTAG
i panPan2.chr15             C 0 I 19
s gorGor5.CYUI01000141v1        22761 4 -    281578 TAAG
i gorGor5.CYUI01000141v1    C 0 I 1
s nomLeu3.chr6               70882468 4 + 121039945 TAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236496 4 + 169600520 TAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170300325 4 - 171882078 TAAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1473926 4 +   1584492 TAAG
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        27776 4 +    138091 TAAG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3047159 4 +   3749464 TACG
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49815550 4 +  54856640 tatt
i saiBol1.JH378108          C 0 C 0
e macNem1.NW_012011934v1       366987 36 +   2379783 I

a score=34354.000000
s hg38.chr15_KI270851v1_alt     83040 13 +    263054 A--CTTTTTTTCTTA
s panTro5.chr15               9316105 13 +  83230942 A--CTTTTTTTCTTA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        22766 13 -    281578 T--TTTTTTTTCTTA
i gorGor5.CYUI01000141v1    I 1 C 0
s nomLeu3.chr6               70882472 13 + 121039945 A--TTTTTTTTCTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236500 13 + 169600520 A--TATTTTTTCTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170300329 15 - 171882078 ATTTTTTTTTTCTTA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1473930 13 +   1584492 A--TTTTTTTTCTTA
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        27780 12 +    138091 ---TTTTTTTTCTTA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3047163 14 +   3749464 AT-TTTTTTTTTTTA
i colAng1.NW_012115677v1    C 0 C 0
s saiBol1.JH378108           49815554 13 +  54856640 a--tttatttattta
i saiBol1.JH378108          C 0 N 0
e panPan2.chr15              73918187 19 -  99763055 I
e macNem1.NW_012011934v1       366987 36 +   2379783 I

a score=6552.000000
s hg38.chr15_KI270851v1_alt     83053 2 +    263054 AA
s panTro5.chr15               9316118 2 +  83230942 AA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        22779 2 -    281578 AA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70882485 2 + 121039945 AA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236513 2 + 169600520 AA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170300344 2 - 171882078 AA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1473943 2 +   1584492 AA
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        27792 2 +    138091 AA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3047177 2 +   3749464 AA
i colAng1.NW_012115677v1    C 0 I 1
e panPan2.chr15              73918187 19 -  99763055 I
e macNem1.NW_012011934v1       366987 36 +   2379783 I

a score=435886.000000
s hg38.chr15_KI270851v1_alt     83055 116 +    263054 CAAGAAACATGTGTAATATTTGTAAAAACACAAAGCTTTTGggccgggtgcagtggcttatgcgtataattccagcactttaggagcctgaggctggtggatca--tgaggtcaggag
s panTro5.chr15               9316120 116 +  83230942 CAAGAAACATGTCTAATATTTGTAAAAACACAAAGCTTTTGggccgggtgcagtggcttatgcgtataattccagcactttaggagcctgaggctggtggatca--tgaggtcaggag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73918206 117 -  99763055 CAAGAAACATGTCTAATATCTTTAAAAATACGAAGC-TTTGAgccaggcgtgatggctcatgcctgtaatcccagcaatttggggggctggggcgggtggatcacccgaattcaggag
i panPan2.chr15             I 19 C 0
s gorGor5.CYUI01000141v1        22781 116 -    281578 CAAGAAACATGTCTAATATCTGTAAAAACACAAAGCTTTTGggccgggtgcagtggctcatgcctgtaattccaggactttgagagcccaaggtgggtggatca--tgaggtcaggag
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70882487 118 + 121039945 CAAGAAACATGTCTAATATCTGTAGAAACACAAAGCTTTGGGGGTgggtgcagtggctcacgcctgtaatcccagcactttgggagcccaaggcgggtggatgacctgaggtcaggag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236515 116 + 169600520 CAAGAAACATGTCTAATATCTGTAAAAAGGCAAAGCTTTTGggtcaggcgcagtggctcacacctgtaatcccagcactttgggaggccgaggcaggcggatga--tggagtcaggag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170300346 115 - 171882078 CAAAAGACATGCTTAATATCTGTAAAAAC-CAAAGCTTTTGggccaggggcggtgtctcatgcctgtaattccagcactttgggagcctgaggcaggcggatca--ggaggtcaggag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       367023 118 +   2379783 CAAGAAACATATCTAATATGTTTAAAAACACAAAGCTTTTGAgccgggtgtggtggatcatgccagtaatcccagcactttcagaggctgaggcaggtggatcacctgaggtcaggag
i macNem1.NW_012011934v1    I 36 I 9491
s cerAty1.NW_012002601v1      1473945 116 +   1584492 CAAGAAACATGTCTAATATCTGTAAAAAGGCAAAGCTTTTGggtcaggcgcagtggctcacacctgtaatcccagcactttgggaggccgaggcaggcggatga--tggagtcaggag
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        27794 116 +    138091 CAAGAAACATGTCTAATATCTGTAAAAAGGCAAAGCTTTTGggtcaggcgcagtggctcacacctgtaatcccagcactttgggaggccgaggcaggcagatga--tggagtcaggag
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3047180 116 +   3749464 CAAGAAACAAGTCTAATATCTGTAAAAGCACAAAGCTTTTGTgctgggtgcagtgcttcacgcctgtaatcccagcactttgggagcccgatgtgggtggatca--cgaggtcaagaa
i colAng1.NW_012115677v1    I 1 C 0

a score=599146.000000
s hg38.chr15_KI270851v1_alt     83171 186 +    263054 attgagaccatcctgactaaaaaggtgaaaccacatctctactaaaaatac-aaaaaattagccaggcgtggtggtgggtgcctgtagtcccagctacttgggaagctgaggcaggagaatggcgtgaacccaggaggtggagcttgcagtgagctcagatcgtgccactgcactcgagcctgggct
s panTro5.chr15               9316236 187 +  83230942 attgagaccatcctgactaaaaaggtgaaaccacatctctactaaaaatacaaaaaaattagccaggcgtggtggtgggtgcctgtagtcccagctacttgggaagctgaggcaggagaatggcgtgaacccaggaggtggagcttgcagtgagctcagatcgtgccactgcactcgagcctgggct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73918323 184 -  99763055 ttcaagaccagcctggccaacatgatgaaatcctgtctctactaaaaatac---aaaagtagctgggcatggtggcaggtgcctgtaatcccagctacttgggaggctgaggcaggagaatcccttgaacctgtgaggcagaggttgcagtgagccaaaatcatgccactgcacttcagcctgggct
i panPan2.chr15             C 0 I 23725
s gorGor5.CYUI01000141v1        22897 182 -    281578 atcgagaccatcctggctaacacggtgaaaccccatcccta-taaaaatac---aaaaaaggccggatgtgg-ggcaggcagctgtagtctcagctacttgggaggctgaggcaggagaatgacatgaacccccgaggtggagcttgcagtgagccaagatcatgccgctgcactccagcctgggct
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70882605 184 + 121039945 ttcgagaccagcctggccaacagggtgaaaccccatctctactaaaaatac--aaaaactagccaggcgtggtggtgggtgcctgtaatcccagcta-tcgggaggctgaggcaggagaatcacttgaacccgggagatggaggttgcagtgagccaagctcacaccactgcactccagcctgggtg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236631 186 + 169600520 atcgaggccatcctggctaacacggtgaaaccccatctctactaaaaatac-aaaaaattagccaggcgtggtggcagacgcctgtagtcccagctacttgggaggccgaggcaggagaatgtcatgaaacctggaggcagagcttgcagtgagccaagatcatgccactgcactccagcctgggca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170300461 186 - 171882078 attgagaccatcctggctaacacggtgaaaacccatctctactaaaagtac-aaacaattagccgggcatggtagtgggtgcctgtagtcccagctacttgggaggatgaggcaggagaatggcgtgaacccaggaggcagagcttgtagtgagccaaggtcattccactgcactctagcctaggct
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1474061 186 +   1584492 atcgaggtcatcctggctaacacggtgaaaccccatctctactaaaaatac-aaaaaattagccaggcgtggtggcagacgcctgtagtcccagctacttgggaggctgaggcaggagaatgtcatgaaacctggaggcagagcttgcagtgagccaagatcacgccactgcactccagcctgggca
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        27910 186 +    138091 atcgaggccatcctggctaacacggtgaaaccccatctctactaaaaatac-aaaaaattagccaggcgtggtggcagacacctgtagtcccagctacttgggaggctgaggcaggagaatgtcgtgaaacctggaggcagagcttgcagtgagccaagatcatgccactgcactccagcctgggca
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3047296 186 +   3749464 atcgagaccattctggctaacatggtgaaatcctgtctctattaaaaatac-aaaaaattagccaggcgtggtggcgggcacctgtagtcccagctacttgggaggcagaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagccaagatcgcaccactgcacagcagcctggact
i colAng1.NW_012115677v1    C 0 C 0
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=48250.000000
s hg38.chr15_KI270851v1_alt     83357 15 +    263054 acagagcgagactcc
s panTro5.chr15               9316423 15 +  83230942 acagagcgagactcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25820823 15 +  99763055 acagagcgagactcc
i panPan2.chr15             I 485 C 0
s gorGor5.CYUI01000141v1        23079 15 -    281578 acagagcaagactcc
i gorGor5.CYUI01000141v1    C 0 I 35072
s nomLeu3.chr6               70882789 15 + 121039945 acagagcgagacgcc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236817 15 + 169600520 acagagcaaggctct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170300647 15 - 171882078 acagtgcaagactcc
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1474247 15 +   1584492 acagagcaaggctct
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1        28096 15 +    138091 acagagcaaggctct
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115677v1      3047482 15 +   3749464 acagagagacactct
i colAng1.NW_012115677v1    C 0 C 0
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=13914.000000
s hg38.chr15_KI270851v1_alt     83372  8 +    263054 ttctca--------aa
s panTro5.chr15               9316438 16 +  83230942 ttctcaaaataaataa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25820838 12 +  99763055 ttctca----aaataa
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               70882804  8 + 121039945 atctca--------aa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7                8236832  8 + 169600520 gtctca--------aa
i rheMac8.chr7              C 0 I 2331
s macFas5.chr7              170300662  8 - 171882078 atctca--------aa
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1474262  8 +   1584492 gtctca--------aa
i cerAty1.NW_012002601v1    C 0 I 2329
s manLeu1.NW_012101289v1        28111  8 +    138091 gtctca--------aa
i manLeu1.NW_012101289v1    C 0 I 3199
s colAng1.NW_012115677v1      3047497  8 +   3749464 gtctca--------aa
i colAng1.NW_012115677v1    C 0 C 0
e gorGor5.CYUI01000141v1        23094 35072 -    281578 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=27864.000000
s hg38.chr15_KI270851v1_alt     83380 45 +    263054 ataaataaataaataaataaata----aaACTTCTATTTCTTTCACTTT
s panTro5.chr15               9316454 45 +  83230942 ataaataaataaataaataaata----aaACTTCTATTTCTTTCACTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25820850 45 +  99763055 ataaataaataaataaataaata----aaACTTCTATTTCTTTCACTTT
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               70882812 45 + 121039945 agaaataaaataaaatacaaagt----aaaTTTTAAAAGTTTTCAATTT
i nomLeu3.chr6              C 0 I 31487
s macFas5.chr7              170300670 49 - 171882078 acaaacaaacaaacaaaacaaaacaaGGAACTTCTATTTCTCTCACTTT
i macFas5.chr7              C 0 C 0
s colAng1.NW_012115677v1      3047505 39 +   3749464 ---------aaaacaaaacaaaagaa-gaaCTTCTGTTTCTCTCACTTT
i colAng1.NW_012115677v1    C 0 C 0
e gorGor5.CYUI01000141v1        23094 35072 -    281578 I
e manLeu1.NW_012101289v1        28119 3199 +    138091 I
e cerAty1.NW_012002601v1      1474270 2329 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7                8236840 2331 + 169600520 I

a score=311933.000000
s hg38.chr15_KI270851v1_alt     83425 392 +    263054 CTAATATAATTTTAATAtctcctcctgggatttcactaagacacattttggacctcattctgatcttcctctcccctccaagcccaccaacttctgccctatcatctatcctcatgtctctctgtgtgacatgctgacttactttttggagagaatcgtctaaacaattaattctttcttctcgtgtctaatccatccact-agtttcttatttcaacaattacatttt-tatttccttatttcattttattctgagactgagtctcattctgtcacacaggctgaattgcagtggtacgaacctgcagactcggcctcctgggctcaagtgatcctcccacctcagcctcttgagtagctgggactataggcaggtgccccatacccagctaa
s panTro5.chr15               9316499 392 +  83230942 CTAATATAATTTTAATAtctcttcctgggatttcactaagacacactttggacctcattctgatcttcctctcccctccaagcccaccaacttctgccctatcatctatcctcatgtctctctgtgtgacatgctgacttactttttggagagaatcgtctaaataattaattctttcttctcgtgtctaatccatccatt-agtttcttatttcaacaattacatttt-tatttccttatttcattttattctgagactgagtctcattctgtcacacaggctgaatggcagtggtacgaacctacagactcggcatcctgggctcaagtgatcctcccgcctcagcctcttgagtagctgggactataggcaggtgccccatacccagctaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25820895 392 +  99763055 CTAATATAATTTTAATAtctcctcctgggatttcactaagacacactttggacctcattctgatcttcctctcccctccaagcccaccaacttctgccctatcatctatcctcatgtctctctgtgtgacatgctgacttactttttggagagaatcgtctaaataattaattctttcttctcgtgtctaatccatccatt-agtttcttatttcaacaattacatttt-tatttccttatttcattttattctgagactgagtctcattctgtcacacaggctgaatggcagtggtacgaacctgcagactcggcatcctgggctcaagtgatcctcccgcctcagcctcttgagtagctgggactataggcaggtgccccatacccagctaa
i panPan2.chr15             C 0 C 0
s macFas5.chr7              170300719 386 - 171882078 CTAATATTATTTTAATACGtcctccagggatttcactaacacatattttagacctcattctgatctccctgtccctgccaagcccaccaacttctgccctatcaactatcctcatgtctctctgtgtaacatactgacttactttttgcagagaatcatctaaccaattaattatttcttctcatgtctaatccatccactgagtctcttatttcaacaattacatttt--------taattttattgtattcagagagagtgtctcactctgtcacccaggctagagtgcagtggcacgaacctgcagccttggcctcctgggctcaagtgatcctcccacctcagcctcctgagtagctgggattataggcaggtgccccacacccagctaa
i macFas5.chr7              C 0 C 0
s colAng1.NW_012115677v1      3047544 394 +   3749464 CTAATATAATTTTAATAtctcctcctgggattccagtaagatttattttagaccttattctgatctccctctccccctcaaccccaccaacttctgatctatcatctatcctcatgtctctctgtgtaacatactgactgactttttggagagaattacctaaccaattaattctttcttctggtgtctaatccatccactgaatttcttatttcaacaattacattttttatttccttatttcattttattctgggacagagtctcactctgtcacccaggctgcactgcagtggtacgaacctgcagccacgaactcctgaactcaagtgatcctcccacctcagcctcctgagtagctgggactataggcaggtgccccacacccagctaa
i colAng1.NW_012115677v1    C 0 N 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1        23094 35072 -    281578 I
e manLeu1.NW_012101289v1        28119 3199 +    138091 I
e cerAty1.NW_012002601v1      1474270 2329 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7                8236840 2331 + 169600520 I

a score=546.000000
s hg38.chr15_KI270851v1_alt     83817 1 +    263054 t
s panTro5.chr15               9316891 1 +  83230942 t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25821287 1 +  99763055 t
i panPan2.chr15             C 0 C 0
s macFas5.chr7              170301105 1 - 171882078 t
i macFas5.chr7              C 0 N 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1        23094 35072 -    281578 I
e manLeu1.NW_012101289v1        28119 3199 +    138091 I
e cerAty1.NW_012002601v1      1474270 2329 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7                8236840 2331 + 169600520 I

a score=1992.000000
s hg38.chr15_KI270851v1_alt    83818 7 +    263054 ACCATAC
s panTro5.chr15              9316892 7 +  83230942 ACCATAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25821288 7 +  99763055 ACCATAC
i panPan2.chr15             C 0 C 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1       23094 35072 -    281578 I
e manLeu1.NW_012101289v1       28119 3199 +    138091 I
e cerAty1.NW_012002601v1     1474270 2329 +   1584492 I
e macNem1.NW_012011934v1      367141 9491 +   2379783 I
e rheMac8.chr7               8236840 2331 + 169600520 I

a score=991218.000000
s hg38.chr15_KI270851v1_alt    83825 770 +    263054 CCACACAGCAGAGACATAAAAGATTTCCATCCTCAAAGAAGGTTCCATTGAACAGCACTGCTCTAATTCAATAAAAAATACCACTGAGCACAACATAGTAATAGAAAAGATTGAAGAGGCAGTGCTGATACTTAAAAACCTGGTATTTTCAgccaggcatggtggctcatgcctgtaatcctggcactttgggaggctgaggt-gggaagatcgcttaagcccaggagttctagaccagcctgggcaacatggtg-aaaccctgtctctacaaaaaatacaaaaaattagctgggcatggtggcatgtgcctgtagtcccagctacttgggaggctgaggtgggagatcacccgagcctgggaggtcaaggctgcaatgaggtgagatggcaccaccacactccagcctgggtgacagagtgagaccctgtctc-aaaaaca-----aaaaacaaaaaacaaaacaaaaaCACCTGATATTTATTTTTAAGTACACTATTTTCAAACATTCAGAAGTTATTTCATCCTACCTTCATGGTTTCCATTCTATGCCTGGTTTAGAATTGGGATCTGATAAAATAAACGTGTTCAACAGAACCACTTCTCATGGCTGTATAACAGATGATCAATATGTATTTGCTGAGGAAATCATACAATTTTCTTAAATTTTTTTAACAAAAATTGTGGTTTCAAGGGACCAAACTTGAATACTACACCTTCATGTTCTAAGAATCAGGGGACTTATATAAAACCTCAGTTGCCTGATAAGGACTACATC
s panTro5.chr15              9316899 770 +  83230942 CCACACAGCAGAGACATAAAAGATTTCCATCCTCAAAGAAGGTTCCATTGAACAGCACTGCTCTAATTCAATAAAAAATACCACTGAGTACAACATAGTAATAGAAAAGATTGAAGAGGCAGTGCTGATACTTAAAAACCTGGTATTTTCAgccaggcatggtggctcatgcctgtaatcctggcactttgggaggctgaggt-gggaagatcgcttaagcccaggagttctagaccagctggggcaacatggtg-aaaccctgtctctacaaaaaatacaaaaaattagctgggcatggtggcatgtgcctgtagtcccagctacttgggaggctgaagtgggagatcacccgagcctgggaggtcaaggctgcaatgaggtgagatggcaccaccacactccagcctgggtgacagagtgagaccctgtctc-aaaaaca-----aaaaacaaaaaacaaaacaaaaaCACCTGATATTTATTTTTAAGTACACTATTTTCAAACATTCAGAAGTTATTTCATCCTACCTTCATGGTTTCCATTCTATGCCTGGTTTAGAACTGGGATCTGATAAAATAAACGTGTTCAACAGAACCACTTCTCATGGCTGTATAACAGATGATCAATATGTATTTGCTGAGGAAATTATACAATTTTCTTAATTTTTTTTAACAAAAATTGTGGTTTCAAGGGACCAAACTTGAATACTACACCTTCATGTTCTAAGAATCAGGGGACTTATATAAAACCTCAGTTGCCTGATAAGGACTACATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25821295 770 +  99763055 CCACACAGCAGAGACATAAAAGATTTCCATCCTCAAAGAAGGTTCCATTGAACAGCACTGCTCTAATTCAATAAAAAGTACCACTGAGCACAACATAGTAATAGAAAAGATTGAAGAGGCAGTGCTGATACTTAAAAACCTGGTATTTTCAgccaggcatggtggctcatgcctgtaatcctggcactttgggaggctgaggt-gggaagatcgcttaagcccaggagttctagaccagcttgggcaacatggtg-aaaccctgtctctacaaaaaatacaaaaaattagctgggcatggtggcatgtgcctgtagtcccagctacttgggaggctgaggtgggagatcacccgagcctgggaggtcaaggctgcaatgaggtgagatggcaccaccacactccagcctgggtgacagagtgagaccctgtctc-aaaaaca-----aaaaacaaaaaacaaaacaaaaaCACCTGATATTTATTTTTAAGTACACTATTTTCAAACATTCAGAAGTTATTTCATCCTACCTTCATGGTTTCCATTCTATGCCTGGTTTAGAACTGGGATCTGATAAAATAAACGTGTTCAACAGAACCACTTCTCATGGCTGTATAACAGATGATCAATATGTATTTGCTGAGGAAATTATACAATTTTCTTAATTTTTTTTAACAAAAATTGTGGTTTCAAGGGACCAAACTTGAATACTACACCTTCATGTTCTAAGAATCAGGGGACTTATATAAAACCTCAGTTGCCTGATAAGGACTACATC
i panPan2.chr15             C 0 C 0
s rheMac8.chr7               8239171 774 + 169600520 ccacacagcagggacataaaagatttccatcctcaaagaaagttctactgaacagcactgCTCTAATTAAATATAAAATACCAATGAGCACAACATAGTAATAGAAAAGACTGAAGAGGTAGTGCTGATACTTAAAAACCTGGTATTTTCAgccaggcgtggtggctcatgcctgtaatcctagcactttgggaggctgtggt-gggaggatcgcttaagcacaggaattctagaccagcctgggcaacatggtg-aaaccgtgtctctacaaaaaatataaaaaattagcttggcatggtgacatgcgcctgtagtcccagctacttgggaggctgaggtgggagatcacctgagccccagaggtgaagtctgcaatgaggtgagattgaaccaccacactccagcctgggtgacagagtgagaccctgtctc-aaaaaaaccaggaaaacaaaaaaacaaaacaaaaaCACCTGATATTTATTTTTAAGTCCTCTATTTTCAAACATTCAGAAGTTATTCCATCCTATCTTCATGGTTTCCATTCTATGCCTGGTTTAGGATTGGGATCTGATAAAATAAACATGTTCAACAGAACCAGTTCTCATGGCTGTATAACAGATGATCAATACATATTTGATGAGGAAATTATTCAATTTTCTTAATTTTTTTC-ACAAAATTTGTGGTTTCAAGGGACCAAACTTGAATACTATGCCTTCATGTTCTAAGAATCAGGGGACTTATATAAAACCTCTGTTGCCTGATAAGGGCTACATC
i rheMac8.chr7              I 2331 C 0
s cerAty1.NW_012002601v1     1476599 774 +   1584492 ccacacagcagggacataaaagatttccatcctcaaagaaagttctattgaacagcactgCTCTAATTAAATAAAAGATGCCATTGAGCACAACATGGTAATAGAAAAGATTGAAGAGGTAGTGCTGATACTTAAAAACCTGGTATTTTCAgccaggcgtggtggctcatgcctgtaatcctagcactttgggagactgaggtggggaggatggcttaaggccaggagttctagaccagcctgggcaacatggtg-aaaccgtgtctctacaaaaaatataaaaaattagc-tggcatggtgacatgcgcctgtagtcccagctacttgggaggctgaggtgggagatcacctgagcccaggaggtcaagtctgcaatgaggtgagattgcaccaccacactccagcctgggtgacagagtgagaccctgtctc-aaaaaaaccaggaaaacaaaaaaacaaaacaaaaaCACCTGATATTTATTTTTAAGTCCTCTATTTTCATACATTCAGAAGTTATTCCATCCTATCTTCATGGTTTCCATTCTATGCCTGGTTTAGGATTGGAATCTGATCAAATAAACATGTTCAACAGAACCAGTTCTCATGGCTGTATAACAGATGATCAATACATATTTGATGAGGAAATTATTCAATTTTCTTAATTTTTTTC-ACAAAATTTGTGGTTTCAAGGGACCAAACTTGAATACTACACCTTCATGTTCTAAGAATCAGGGGACTTATATAAAACCTCTGTTGCCTGATAAGGGCTACATC
i cerAty1.NW_012002601v1    I 2329 C 0
s manLeu1.NW_012101289v1       31318 776 +    138091 ccacacagcagggacataaaagattgccatcctcaaagaaagttctattgaacagcactgCTCTAATTAAATAAAAAATACCATTGAGGACAACATGGTAATAGAAAAGATTGAAGAGGTAGTGCTGATACTTAAAAACCTGGTATTTTCAgccaggcgtggtggctcatgcctgtaatcctagcactttgggaggctgtggt-gggaggatcgcttaagcacaggaattctagaccagcctgggcaacatggtgaaaaccgtgtctctacaagaaatataaaaaattagcttggcatggtgacatgcgcctgtagtcccagctacttgggaggctgaggtgggagatcacctgagcccaggaggtcaagtctgcaatgaggtgagattgcaccaccacactccagcctgggtgacagagtgagaccctgtctcaaaaaaaaccaggaaaacaaaaaaacaaaacaaaaACACCTGATAGTTATTTTTAAGTCCTCTATTTTCAAACATTCAGAAGTTATTCCATCCTATCTTCATGGTTTCCATTCTATGCCTGGTTTAGGATTGGGATCTGATAAAATAAACATGTTCAACAGAACCAGTTCTCATGGCTGTATAACAGATGATCAATACATATTTGATGAGGAAATTATTCAATTTTCTTAATTTTTTTC-ACAAAATTTGTGGTTTCAAGGGACCAAACTTGAATACTACGCCTTCATGTTCTAAGAATCAGGGGACTTATATAAAACCTCTGTTGCCTGATAAGGGCTACATC
i manLeu1.NW_012101289v1    I 3199 I 3301
e nomLeu3.chr6              70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1       23094 35072 -    281578 I
e macNem1.NW_012011934v1      367141 9491 +   2379783 I

a score=177313.000000
s hg38.chr15_KI270851v1_alt    84595 249 +    263054 AAAGTGAAAAGCCATGGG-AAAGAACTAGAAAGTATACTTTTGACCCTAGTTCTGT--AGTTTCCTT-ATGCCACAGGTAATACACATCGCAATTCCTGCCAAATTCTTTCCCTCACCTCTGTTTATGGTCTCGATTCCATAAATAGGAGAAGGGCATGAATTTGCTTTAGTtagatagacagatagatggatagatagata----gatggatggatggatggatggatagatagatagaCagagataaagatagag
s panTro5.chr15              9317669 255 +  83230942 AAAGTGAAAAGCCATGGG-AAAGAACTAGAAAGTATACTTTTGACCCTAGTTCTGTAAAGTTTCCTT-ATGCCACAGGTAATACACATCGCAATTCCTGCCAAATTCTTTCCCTCACCTCTGTTTATGGTCTCGATTCCATAAATAGGAGAAGGGCATTAATTTGCTTtagttagatagacagatagatggatagatagatagatggatggatggatggatggatggatagatagatagacagagataaagatagag
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25822065 255 +  99763055 AAAGTGAAAAGCCATGGG-AAAGAACTAGAAAGTATACTTTTGACCCTAGTTCTGTAAAGTTTCCTT-ATGCCACAGGTAATACACATCGCAATTCCTGCCAAATTCTTTCCCTCACCTCTGTTTATGGTCTCGATTCCATAAATAGGAGAAGGGCATGAATTTGCTTTAGTtagatagacagatagatggatagatagatagatggatggatggatggatggatggatggatagatagacagagataaagatagag
i panPan2.chr15             C 0 C 0
s rheMac8.chr7               8239945 218 + 169600520 GAAGTGAAAAGCCATGGG-AAAAAACTAGAAAGTATACTTTTGACCCTAGTTCTGT--AGTTTCCTTAATGCCACAGATAATACAAATCCCCATTCCTGCCAAATTCCTTCCCTCATCTCCATCTATTGTCTTGATTCCATAAATAGGAGAAGAGCATGAATTTGCTTtagt----tagacagatagatggatagatggat--------------------------------agagagagagagagagagatagac
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002601v1     1477373 238 +   1584492 GAAGTGAAAAGCCATGGGAAAAAAACTAGAAAGTATACTTTTGACCCTAGTTCTGTAAAGTTTCCTT-ATGCCACAGATAATACACATCCCCATTCCTGCCAAATTCCTTCCCTCATCTCCATCTATTGTCTTGATTCCATAAATAGGAGAAGAGCATGAATTTGCTTtagt----tagacagatagatggatagatagatggagaga--------------gagagagagagagagagagagagagagagatagac
i cerAty1.NW_012002601v1    C 0 C 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1       23094 35072 -    281578 I
e manLeu1.NW_012101289v1       32094 3301 +    138091 I
e macNem1.NW_012011934v1      367141 9491 +   2379783 I

a score=254004.000000
s hg38.chr15_KI270851v1_alt    84844 196 +    263054 acaaagatggagacagagatggacatagagacagaTTTGCAGAAGATAAGTTCTAGGTGAACTAGTGTCAACATTAAAGTGGTATGCCTACATCTAACTATTCTGGAGAGAAAAACATACCTCAAAGAAATTGACTTAAATATATACAGAGAAAAAGTTTAAGCTGAAAGCTACTGCCTTTTTATATGAGACACTT
s panTro5.chr15              9317924 196 +  83230942 acaaagatggagacagagatggacatagagacagatTTGCAGAAGATAAGTTCTAGGTAAACTAGTGTCAACATTAAAGTGGTATGCCTACATCTAACTATTCTGGAGAGAAAAACATACCTCAAAGAAATTGACTTAAATATATACAGAGAAAAAGTTTAAGCTGAAAGCTACTGCCTTTTTATATGAGACACTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25822320 196 +  99763055 acaaagatggagacagagatggatatagagacagaTTTGCAGAAGATAAGTTCTAGGTAAACTAGTGTCAACATTAAAGTGGTATGCCTACATCTAACTATTCTGGAGAGAAAAACATACCTCAAAGAAATTGACTTAAATATATACAGAGAAAAAGTTTAAGCTGAAAGCTACTGCCTTTTTATATGAGACACTT
i panPan2.chr15             C 0 C 0
s rheMac8.chr7               8240163 196 + 169600520 acaaagatggagatagagatggagatagagacagatTTGCAGAAGACAAGTTATAGGTAAACTAACATCAACATCAAAGTGGTATACCTACATCTAACTATTCTGGAAAGAAAAGCATACCTCAAAGAAATTGACTTAAGTACATACAGAGAAAAAGTTTAAGCTGAAAGCTACTGTCCTCTTATATGAGACACTT
i rheMac8.chr7              C 0 I 319
s cerAty1.NW_012002601v1     1477611 196 +   1584492 acaaatatggagatagagatggagatagagacagaTTTGCAGAAGACAAGTTATAGGTAAACTAGTGTCAACATCAAAGTGGTATACCTACATCTAACTATTCTGGAAAGAAAAGCATACCTCAAAGAAATTGACTTAAGTACATACAGAGAAAAAGTTTAAGCTGAAAGCTACTGTCCTCTTATATGAGACACTT
i cerAty1.NW_012002601v1    C 0 I 315
s manLeu1.NW_012101289v1       35395 196 +    138091 acaaatatggagatagagacagagatagagacagaTTTGCAGAAGACAAGTTATAGGTAAACTAATGTCAACATCAAAGTGGTATACCTACATCTAACTATTCTGGAAAGAAAAGCATACCTCAAAGAAATTGACTTAAGTACATACAGAGAAAAAGTTTAAGCTGAAAGCTACTGTCCTCTTATATGAGACACTT
i manLeu1.NW_012101289v1    I 3301 I 314
e nomLeu3.chr6              70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1       23094 35072 -    281578 I
e macNem1.NW_012011934v1      367141 9491 +   2379783 I

a score=846.000000
s hg38.chr15_KI270851v1_alt    85040 3 +    263054 TAG
s panTro5.chr15              9318120 3 +  83230942 TAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25822516 3 +  99763055 TAG
i panPan2.chr15             C 0 C 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1       23094 35072 -    281578 I
e manLeu1.NW_012101289v1       35591 314 +    138091 I
e cerAty1.NW_012002601v1     1477807 315 +   1584492 I
e macNem1.NW_012011934v1      367141 9491 +   2379783 I
e rheMac8.chr7               8240359 319 + 169600520 I

a score=1000.000000
s hg38.chr15_KI270851v1_alt    85043 1 +    263054 G
s panTro5.chr15              9318123 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25822519 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s rheMac8.chr7               8240678 1 + 169600520 G
i rheMac8.chr7              I 319 C 0
s manLeu1.NW_012101289v1       35905 1 +    138091 g
i manLeu1.NW_012101289v1    I 314 C 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1       23094 35072 -    281578 I
e cerAty1.NW_012002601v1     1477807 315 +   1584492 I
e macNem1.NW_012011934v1      367141 9491 +   2379783 I

a score=642289.000000
s hg38.chr15_KI270851v1_alt    85044 529 +    263054 AAATTACTtggggggcaagagagaaaatgggtggacatagctcagaggttacacagtagcagatatgtaggatgaacaagcctagaaatataatgtacaacgcgagaaatataggtaataaaattgtactgta-ttgggattcacgctaaatgagattttaagctcctcttgccaccaaacaaaaagaaaacgggtaactatctgagttgaaggatacgttaatttgcttcactgtagtaatttttttaaccatctatatgcatcccacaaaatcatgttgtataccttaaatacacagaatacaatttatttAACATAAAAAACTACTCCAATATTTTCTGCATTTTTAATATGCTCACCCAAAGAAAGCATTAATTTGCATCTTTGATGTTAAACAGATAGCCTAATCAAGTCACTATCAAGATCAAGACTAAAAGTTACAGCTTTTTTCTTTTGATGCCTTTCAGATATATCTATTTATATATAAAAAtatatatacacacacacatacatacacacacacatatat
s panTro5.chr15              9318124 530 +  83230942 AAATTACTtggggggcaagagagaaaatgggtggacatagctcagaggttacacagtagcagatatgtaggatgaacaagcctagaaatataatgtacaatgtgagaaatataggtaataaaattgtgctgtatttgggattcacgctaaatgagattttaagctcctcttgccaccaaacaaaaagaaaacgtgtaactatctgagttgaaggatacgttaatttgcttcactgtagtaatttttttaaccatctatatgcatcccataaaatcatgttgtataccttaaatacacagaatacaatttatttgacaTAAAAAACTACTCCAATATTTTCTGCATTTTTAATATGCTCACCCAAAGAAAGCATTAATTTGCATCTTTGATGTTAAACAGATAGCCTAATCAAGTCACTATCAAGATCAAGACTAAAAGTTACAGCTTTTTTCTTTTGATGCCTTTCAGATATATCTATTTATATATAAAAAtatatatacacacacacatacatacacacacacatatat
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25822520 530 +  99763055 AAATTACTtggggggcaagagagaaaatgggtggacatagctcagaggttacacagtagcagatatgtaggatgaacaagcctagaaatataatgtacaatgtgagaaatataggtaataaaattgtgctgtatttgggattcacgctaaatgagattttaagctcctcttgccaccaaacaaaaagaaaacatgtaactatctgagttgaaggatacgttaatttgcttcactgtagtaatttttttaaccatctatatgcatcccataaaatcatgttgtataccttaaatacacagaatacaatttatttgacaTAAAAAACTACTCCAATATTTTCTGCATTTTTAATATGCTCACCCAAAGAAAGCATTAATTTGCATCTTTGATGTTAAACGGATAGCCTAATCAAGTCACTATCAAGATCAAGACTAAAAGTTACAGCTTTTTTCTTTTGATGCCTTTCAGATATATCTATTTATATATAAAAAtatatatacacacacacatacatacacacacacatatat
i panPan2.chr15             C 0 C 0
s rheMac8.chr7               8240679 518 + 169600520 AAATTACTt-gggggcaagtgagaaaatggagagacatagctcagaggatacaaagtagcacatatgtaggatgaacaagtctagaaatataatgtacaacatgagaaatataggtaataaaattg--ctgtatttgggattcacgctaaatgagattttaagctcctcttgccaccaaacaaaaagaaaacgggtaactatgtgagttgaaggatacgttaatttgcttcactgcagtaa-tcttttaaccatctatatgtatcccataacatcatgttgtataccttaaatatacagaggacaatttatttAAAATGAAAAACTACTCCAATATTTTCTGCATTTTTAATATTCTCACTCAAAGAAAGTATTAATTTGCATATCTGATGTTAAACAGATAGCCTAATCAAGTCACTATCAAGATCAAGACTGAAAGTTATAGCTTTTCTCTTTTGATGCCTTCGAGata--------tatatgtacacatatatatacacatacacatatatatacacacacatatat
i rheMac8.chr7              C 0 I 6
s cerAty1.NW_012002601v1     1478122 518 +   1584492 aaaTTACTt-gggggcaagtgagaaaatggagagacacagctcagaggatacaaagtagcacgtatgtaggatgaacaagtctagaaatataatgtacaacatgagaaatataggtaataaaattg--ctgtatttgggattcacgctaaatgagattttaagctcctcttgccaccaaacaaaaagaaaacgggtaactatgtgagttgaaggatacgttaatttgcttcactgcagtaa-tcttttaaccatctatatgtatcccataacatcatgttgtataccttaaatatacagaggacaatttatttAAAATGAAAAACTACTCCAATATTTTCTGCATTTTTAATATTCTCACTCAAAGAAAGTATTAATTTGCATATCTGATGTTAAACAGATAGCCTAATCAAGTCACTATCAAGATCAAGACTGAAAGTTATAGCTTTTCTCTTTTGATGCCTTCGAGata--------tagatgtacacatatatatacacatacacatatatatatacacaaatatat
i cerAty1.NW_012002601v1    I 315 I 18
s manLeu1.NW_012101289v1       35906 514 +    138091 aaaTTACTt-gggggcaagtgagaaaatggagagacatagctcagaggatacaaagtagcacatatgtaggatgaacaagtctagaaatataatgtacaacatgagaaatataggtaataaaattg--ctgtatttgggattcacgctaaatgagattttaagctcctcttgccaccaaacaaaaagaaaactggtaactatgtgagttgaaggatacgttaatttgcttcactgcagtaa-tcttttaaccatctatatgtatcccataacatcatgttgtataccttaaatatacagacgacaatttatttAAAATGAAAAACTACTCCAATATTTTCTGCATTTTAAATATTCTCACTCAAAGAAAGTATTAATTTGCATATCTGATGTTAAACAGATAGCCTAATCAAGTCACTATCAAGATCAAGACTGAAAGTTATAGCTTTTCTCTTTTGATGCCTTCGAGata--------tatatgtacacatatatatac----acaaatatatatacacacacatatgt
i manLeu1.NW_012101289v1    C 0 C 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1       23094 35072 -    281578 I
e macNem1.NW_012011934v1      367141 9491 +   2379783 I

a score=15470.000000
s hg38.chr15_KI270851v1_alt    85573 26 +    263054 atgtagttatgtgtgtgtgtatatat
s panTro5.chr15              9318654 26 +  83230942 atgtagttatgtgtgtgtgtatatat
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25823050 26 +  99763055 atgtagttatgtgtgtgtgtatatat
i panPan2.chr15             C 0 C 0
s cerAty1.NW_012002601v1     1478658 16 +   1584492 ----------gtgtgtgtgtatatat
i cerAty1.NW_012002601v1    I 18 I 8
s manLeu1.NW_012101289v1       36420 16 +    138091 ----------gtgtgtgtatatatat
i manLeu1.NW_012101289v1    C 0 I 8
e nomLeu3.chr6              70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1       23094 35072 -    281578 I
e macNem1.NW_012011934v1      367141 9491 +   2379783 I
e rheMac8.chr7               8241197  6 + 169600520 I

a score=597725.000000
s hg38.chr15_KI270851v1_alt    85599 498 +    263054 agttacaGTTTTggccaggtgcaatggctgacacctgtaatctcagccctttgggagaccaaggctgaaggcttgcttgaggccaggagtttgagaccagcctgggcaacgaagcaagaccctatctctacaatttttttttttaacaaaattagccagggatgatggcatgcacttgtagtcccagatacttgggaggctgaggcggaggatcccttgagcccaggagttcaaagctgcaatgggctgttactgtgccactggatcccagtctgagcaacagagcaagactttgtctcaaaaacaaaaTTTATAATTAAAGATAAATAGTTATAGTTTTATGAACCTTGACTGCAACTGAGGGAAAATCCCGTAATTGGCAAAATGAATTCTGCCTGCTTGCAAAACTTCTGACTAATACGGAATGAATAATAGGAAGCCCATATTAGAGGATCCACATCAGTTAAAAAG--TTTCCAAATAAGAGTGACTCTGAGTTC
s panTro5.chr15              9318680 498 +  83230942 agttacaGTTTTggccaggtgcaatggctgacacctgtaatctcagcactttgggagaccaaggcagaaggcttgcttgaggccaggagtttgagaccagcctgggcaacgaagcaagaccctatctctacaatttttttttttaacaaaattagccagggatgatggcatgcacttgtagtcccaggtacttgggaggctgaggcggaggatcccttgagcccaggagttcaaagctgcaatgggctgttgctgtgccactggatcccagtctgagcaacagagcaagactttgtctcaaaaacaaaaTTTATAATTAAAGATAAATAGTTATAGTTTTATGAACCTTGACTGCAACTGAGGGAAAATCCTGTAATTGGCAAAATGAATTCTGCCTGCTTGCAAAACTTCTGACTAATACGGAATGAATAATAGGAAGCCCATATTAGAGGATCCACATCAGTTAAAAAG--TTTCCAAATAAGAGTGACTCTGAGTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25823076 498 +  99763055 agttacaGTTTTggccaggtgcaatggctgacacctgtaatctcagcactttgggagaccaaggcagaaggcttgcttgaggccaggagtttgagaccagcctgggcaacgaagcaagaccctatctctacaatttttttttttaacaaaattagccagggatgatggcatgcacttgtagtcccagatacttgggaggctgaggcggaggatcccttgaacccaggagttcaaagctgcaatgggctgttactgtgccactggatcccagtctgagcaacagagcaagactttgtctcaaaaacaaaaTGTATAATTAAAGATAAATAGTTATAGTTTTATGAACCTTGACTGCAACTGAGGGAAAATCCTGTAATTGGCAAAATGAATTCTGCCTGCTTGCAAAACTTCTGACTAATACAGAATGAATAATAGGAAGCCCATATTAGAGGATCCACATCAGTTAAAAAG--TTTCCAAATAAGAGTGACTCTGAGTTC
i panPan2.chr15             C 0 C 0
s rheMac8.chr7               8241203 489 + 169600520 AGTTTTAGTTTTggccagttgcaacggctgacacctgtaatctgagcactttgggaggccgaggcagaaaggttgcttgaggccaggagtttgagaccagcctgggcaacagagcaagaccctatctctacaaagttttttt---aaaaaattagccaggggtgatggcatgcacttgtagtcccagatacttgggaggctgaggcggaggatcccttgagcccacgacctcaaagctgcaatgagctattactgtgccactgcattccagtccaggcaacagagcaagaccttgtctcaca---aaaaGTTCTAATTAAAGATAAAGAGTTATAATTTTACAAACCTTGACTGCAACTGAGGGAAAATCCCGTAATTGGCAAAATGAATTCTGCCTGCTTGCAAAACTT-TGACTAACAGA----GAATAATAGGAAGCCCAAATTAGAGGATCCACATCAGTTAAAAAGTTTTTCCAAATAAGAGTGACTCTGAGTTC
i rheMac8.chr7              I 6 C 0
s cerAty1.NW_012002601v1     1478682 473 +   1584492 AGTTTTAGTTTTggccagttgcaacggctgacaccagtaatctgagcactttgggaggccgaggcagaaaggttgcttgaggccaggagtttgagaccagcctgggcaacagagcaagaccctatctct--------------------aattagccaggggtgatggcatgcacttgtagtcccagatactttggaggctgaggcagaggattccttgagcccacgagctcaaagctgcaatgagctattactgtgccactgcattccagtccaggcaacagagcaagaccttgtctcaaa---aaaaGTTCTAATTAAAGATAAAGAGTTATAATTTTACAAACCTTGACTGCAACTGAGGGAAAATCCTGTAATTGGCAAAATGAATTCTGCCTGCTTGCAAAACTTCTGACTAATAGA----GAATAATAGGAAGCCCAAATTAGAGGATCCACATCAGTTAAAAAGTTTTTCCAAATAAGAGTGACTCTGAGTTC
i cerAty1.NW_012002601v1    I 8 C 0
s manLeu1.NW_012101289v1       36444 473 +    138091 AGTTTTAGTTTTggccagttgcaacggctgacacctgtaatctgagcactttgggaggccgaggcagaaaggttgcttgaggccaggagtttgagaccagcctgggcaacagagcaagaccctatctct--------------------aattagccaggggtgatggcatgcacttgtagtcccagatactttggaggctggggcagaggattccttgagcccacgagctcaaagctgcaatgagctattactgtgccactgcattccagtccaggcaacagagcaagaccttgtctcaaa---aaaaGTTCTAATTAAAGATAAAGAGTTATAATTTTACAAACCTTGACTGCAACTGAGGGAAAATCCCGTAATTGGCAAAATGAATTCTGCCTGCTTGCAAAACTTCTGACTAATAGA----GAATAATAGGAAGCCCAAATTAGAGGATCCACATCAGTTAAAAAGTTTTTCCAAATAAGAGTGACTCTGAGTTC
i manLeu1.NW_012101289v1    I 8 I 72893
e nomLeu3.chr6              70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1       23094 35072 -    281578 I
e macNem1.NW_012011934v1      367141 9491 +   2379783 I

a score=644064.000000
s hg38.chr15_KI270851v1_alt    86097 802 +    263054 TGCAGAGTGAAAAGATTGGGTTCAAACCAAACACTTGCAAgatcttgagtaagatacttaatccctctgtgactcactgttctcaaatgtaagtgaagataatTTGTAACTCAAA-----AAAAATGAAAAAGTTTTCTCTAAGATTGCAAATCCTAAGGATAATTTCATTTTAATATCAGTTATTTAGTCTGGATACACCATAATGCAGACTAATTTTCCCTCTGCTTAAAGACCACACAAAAACATTACCAATAAAATTTACTTGTGTATCAACTTTTACTCCTGAGACTTCATCGTTTGTTTGGTTaaaaaaaaaaaaaaaaaaaaGCGCACTAgaccgggcacagtggcccatgtctgtgatctcacttgcggaggccaaggcaggtggatgagtttgagaacaacctgggcaacatggaaaaaccccgtctctacaaaaaaa--atatataaaaattagtcaggtgtggtggcacataactgtggtcccagctactccagagagtgaggcgggaggattgcttgagcccacgcagaggttgcagtgaaccaagatggcaccactgcactccagcctgggtgacagagcaagaccctgtctc----aaaaaaaaaaaaaaTCACTATAAAATTGAAAT----TCACAACAAA--------ATGTGCATACTTAACCTTCTT------------TTTATTTATTTAtttatttatttttaatattttgagacaacatcttgctatgttgcctaggctggtcttgaactcctgggttcaaaccatcctccagtcttgacttcccaaagtactgggactacaggtgtgagccacca
s panTro5.chr15              9319178 801 +  83230942 TGCAGAGTGAAAAGATTGGGTTCAAACCAAACACTTGCAAgatcttgagtaagatacttaatccctctgtgactcactgttgtcaaatgtaagtgaagataatTTGTAACTCAAA-----AAAAATGAAAAAGTTTTCTCTAAGATTGCAAATCCTAAGGATAATTTCATTTTAATATCAGTTATTTAGTCTGGATACACCATAATGCAGACTAATTTTCCCTCTGCTTAAAGACCACACAAAAACATTACCAATAAAATTTACTTGTGTATCAACTTTTACTCCTGAGACTTCATCGTTTGTTTGGTT-----AAAAAAAAAAAAAAAGCGCACTAgaccgggcacagtggcccatgtctgtgatctcacttacggaggccaaggcaggtggatgagtttgagaacaacctgggcaacatggaaaaaccccgtctctacaaaaaaa-taaaaataaaaattagtcaggtgtggtggcacataactgtggtcccagctactccagagagtgaggtgggaggattgcttgagcccacgcagaggttgcagtgaacc-agatggcaccactgcactccagcctgggtgacagagcaagaccctgtctcaaaaaaaaaaaaaaaaaaTCACTATAAAATTGAAAT----TCACAACAAA--------ATGTGCATACTTAACCTTCTT------------TTTATTTATTTAtttatttatttttaatattttgagacaacatcctgctatgttgcctaggctggtcttgaactcctgggttcaagccatcctccagtcttgacttcccaaagtactgggactacaggtgtgagccacca
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25823574 810 +  99763055 TGCAGAGTGAAAAGATTGGGTTGAAACCAAACACTTGCAAgatcttgagtaagatacttaatccctctgtgactcactgttctcaaatgtaagtgaagataatTTGTAACTCAAA-----AAAAATGAAAAAGTTTTCTCTAAGATTGCAAATCCTAAGGATAATTTCATTTTAATATCAGTTATTTAGTCTGGATACACCATAATGCAGACTAATTTTCCCTCTGCTTAAAGACCACACAAAAACATTACCAATAAAATTTACTTGTGTATCAACTTTTACTCCTGAGACTTCATCGTTTGTTTGGTT-----AAAAAAAAAAAAAAAGCACACTAgaccgggcacagtggcccatgcctgtgatctcacttacggaggccaaggcaggtggatgagtttgagaacaacctgggcaacatggaaaaaccccgtctctacaaaaaaaatatatatataaattagtcaggtgtggtggcacatacctgtggtcccagctactccagagagtgaggtgggaggattgcttgagcccacgcagaggttgcagtgaaccaagatggcaccactgcactccagcctgggtgacagagcaagaccctgcctc-----aaaaaaaaaaaaaTCACTATAAAATTGAAAT----TCACAACAAA--------ATGTGCATACTTAATCTTCTTtttatttatttatttatttatttatttatttatttTTAATAttttgagacaacatcttgctatgttgcctaggctggtcttgaactcctgggttcaagccatcctccagtcttgacttcccaaagtactgggactataggtgtgagccacca
i panPan2.chr15             C 0 C 0
s rheMac8.chr7               8241692 815 + 169600520 TGCAGAGTTGAAAGATTGGGTTCAAATCAAAGACTtgtgagatcttgaggaagttacttaatccctctgtgactcactgttctgaaatgtaaatgaagacaatTTGTAACCCAAAAACATAAACATGAAAGAGTTTTCTCGAAGATTGCAAATCCTAAAGATAATTTCATTTTAATATCAGTCATTTAGTCTGGATACACCATAACGCAGACTAATTTTCCCTCTGTGTAAGGTCCACACAAAAACATTATCAATAAAATTTACTTGTGGATCAA-TTTTCCTCCTGAGGCTTCCTCATTTTTTTGGTT--TaaaaaaaaaaaaaaaaaaaGCACTAGACGgggcacagtggcccatgcctgtgatctcacttacagaggccaaggcagatggatgagttggagaccaacccgggcaacatggcaaaaacctgcctctacaaaaaaa----atacaaaaattagtcaggtgtggtgacacatacctgtggtcctggctactctggtgagtgaggtaggaggattatttgagcccacacagaggttgcagtgaaccgagatggcaccactgcactccagcctgggtgacagagcaagaccctgtctg---gaaaaaaaaaaaaaaTCACTATAAAATTGAAATAAAATCACAACAAAGGAAATACATTTGGATACCCAACCTTCTT------------TTAATTTATTTATGTACTTATTTGTAACAttttgagatggcatcttgctatgttgcctagactggtcttcaactcctgggttcaaggcatcctcccgttttgacttcccaaagtactgggattacaggtgtgagccacca
i rheMac8.chr7              C 0 N 0
s cerAty1.NW_012002601v1     1479155 812 +   1584492 TGCAGAGTTGAAAGATTGGGTTCAAATCAAAGACTtgtgagatcttgaggaagttacttaatccctctgtgactcactgttctgaaatgtaaatgaagacaatTTGTAACCCAAAAACATAAACATGAAAGAGTTTTCTCGAAGATTGCAAATCCTAAGGATAATTTCATTTTAATATCAGTCATTTAGTCTGGATACACCATAATGCAGACTAATTTTCCCTCTGTGTAAGGTCCACACAAAAGCATTACCAATAAAATTTACTTGTGGATCAA-TTTTCCTCCTGAGGCTTCCTCATTTTTTTGGTT-----aaaaaaaaaaaaaaaaaGCACTAgaccgggcacagtggcccatgcctgtgatctcacttacggaggccaaggcagatggatgagttggagaccagcctgggcaacatggcaaaaacctgcctctacaaaaaaa----atacaaaaattagtcaggtgtggtgacacatacctgtggtcctggctactctggtgagcgaggtaggaggattatttgagcccacacagaggttgcagtgaaccgagatggcaccactgcactccagcctgggtgacagagcaagaccctgtctg---ggaaaaaaaaaaaaaTCACTATAAAATTGAAATAAAATCACAACAAAGGAAATACATTTGGATACTTAACCTTCTT------------ttaatttatttatttacttatttGTAACAttttgagatggcatcttgctatgttgcctagactggtcttcaactcctgggttcaaggcatcctcccgttttgacttcccaaagtactgggattacaggtgtgagccacca
i cerAty1.NW_012002601v1    C 0 I 66247
e nomLeu3.chr6              70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1       23094 35072 -    281578 I
e manLeu1.NW_012101289v1       36917 72893 +    138091 I
e macNem1.NW_012011934v1      367141 9491 +   2379783 I

a score=383735.000000
s hg38.chr15_KI270851v1_alt    86899 1404 +    263054 gccccgccAGCCCTGTTACActattcttggtccctcaagtgactgtatgaattttaggatcagcctctcgagttccacaaaaaaattctattgggatttgtgtaggaatttcttgaatttatagattaatttgttgagaagtagtatgtttatagcattgagtcctacgattcataatatatatggcatatatttcagtttagtcagttcttcctttaagtccctgggtaatttttatatttgtcttagtcccttcatagtgccataacaaaacacctgagactgggtaatttacacagagcagaagtttattttctcagttctggaggttgggaagaacaagatcaagactccagcagacacagtgtctagtgagggcctggtctctgcttccaagatggtacgttgaatgctgcttcctctggagcaggcaaatgctatgttctcatgaggcagaagggacagatttaccaccacccacaagcccttttataaggaaggcactaatctcatgcatgagggctcacccttatgtcttaatcacttcttaaaggccccacttcttagtactatcatcttgggaattaagttttaatacatgaattttgggagacacattcaggctatggcaatactcttcatgaaaggcc-tgtgtatactttgctagatatattctcagggttttgttgttattgtgaatagaatCTCTttttttttttttttttttttg---ccacggagtctggctcctttgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctctgcccctccaggtttaagcagcctgttgcccaggctggaatgcagtagcatagtcatagttcaatacagcctcaaactcctgggcccaaatgattctctaagctaatatttttaattttttagagatggagtttcattcaaggatcactaaaggccagtgatcctcccgcctcagcttctgaaattgctgggattacaggtgtgattgagccatggagcctggcc---AGACATGGGCTATTGATTCTCGCTGTTACTCTTTTCCCTTTCCTTCTAATCCTTGTATTGGGAAGCAAACAGTATGGAAATTTTATTTCTTCATTTTATTGATACGTAGATCTCTGCTTAGAAGACAATTTTAGTTTTAAATTATAAATGTTTCGTTCATTAttcatagaaaactagatttgccatgggatatttataagtgttgcacgaatgaagggttttctagtcaaataagttgaaacacattacgttaaacaaacttggacagttttgtttccggtcatttttagagttctaaattatgattctactcaagaggatattgtatgcggtattttcaaacCAACTCATCCTGCGTCAGGTTGTGGTTACGCTTTGGGAGA
s panTro5.chr15              9319979 1403 +  83230942 gccctgccAGTCCTGTTACActattcttggcccctcaagtgactgtatgaattttaggatcagcctctcgagttccacaaaaaaattctattgggatttgtgtaggaatttcttgaatttatagattaatttgttgagaagtagtatgtttatagcattgagtcctacgattcataatatatatggcatatatttcagtttagtcagttcttcctttaagtctctgggtagtttttatatttgtcttagtcccttcatagtgctataacaaaacacctgagactgggtaatttacacagagcagaagtttattttctcagttctggaggttgagaagaacaagatcaagactccagcagacacagtgtctagtgagggcctggtctctgcttccaagatggtaggttgaatgctgcttcctctggagcaggcaaatgctatgttctcatgaggcagaagggacagatttaccaccacccacaagcccttttataaggaaggcactaatctcatgcatgagggctcacccttatgtcttaatcacttcttaaaggccccacttcttagtactatcatcttgggaattaagttttaatacatgaattttgggagacacattcaggctatggcaatactcttcatgaaaggccttgtgtatactttgctagatatattctcagggttttgttgctattgtgaatagAAtctc-----ttttttttttttttttg---ccacggagtctggctcctttgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcccctccaggtttaagcagcctgttgcccaggctggaatgcagtagcatagtcatagttcaatacagcctcaaactcctgggcccaaatgattctctaagctaatatttttaattttttagagatggagtttcattcaaggatcactaaaggccagtgatcctcccgcctcagcttctgaaattgctgcgattacaggtgtgattgagccatggagcctggccTATAGACATGGGCTATTGATTCTCGCTGTTACTCTTTTCCCTTTCCTTCTAATCCTTGTATTGGGAAGAAAACAGTATGGAAATTTTATTTCTTCATTTTATTGATACGTAGATCTCTGCTTAGAAGACAATTTTAGTTTTAAATTATAAATGTTTTGTTCATTAttcatagaaaactagatttgccatgggatatttataagtgttgcacgaatgaagagttttctagtcaaataagttgaaacacattaggttaaacaaacttggacagttttgtttCTGGTCATTTTTAGAGTTCTAAATTATGATTCTACTCAAGAGGATATTGTATGCGGTATTTTCAAACCAACTCATCCTGCGTCAGGTTGTGGTTACGCTTTGGGAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25824384 1400 +  99763055 gccccgccAGCCCTGTTACActattcttggcccctcaagtgactgtatgaattttaggatcagcctctcgagttccacaaaaaaattctattgggatttgtgtaggaatttcttgaatttatagattaatttgttgagaagtagtatgtttatagcattgagtcctacgattcataatatatatggcatatatttcagtttagtcagttcttcctttaagtccctgggtaatttttatatttgtcttagtcccttcatagtgctataacaaaacacctgagactgggtaattt--acagagcagaagtttattttctcagttctggaggttgggaagaacaagatcaagactccagcagacacagtgtctagtgagggcctggtctctgcttccaagatggtaccttgaatgctgcttcctctggagcaggcaaatgctatgttctcatgaggcagaagggacagatttaccaccacccacaagcccttttataaggaaggcactaatctcatgcatgagggctcacccttatgtcttaatgacttcttaaaggccccaattcttagtactatcatcttgggaattaagttttaatacatgaattttgggagacacattcaggctatggcaatactcttcatgaaaggccttgtgtatactttgctagatatattctcagggttttgttgctattgtgaatagaatCTC-----ttttttttttttttttgttcctacggagtctggctcctttgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcacctccaggtttaagcagcctgttgcccaggctggaatgcagtagcatagtcatagttcaatacagcctcaaactcctgggcccaaatgattctctaagctaata-ttttaattttttagagatggagtttcattcaaggatcactaaaggccagtgatcctcccgcctcagcttctgaaattgctgcgattacaggtgtgattgagccatggagcctggcc---AGACATGGGCTATTGATTCTCGCTGTTACTCTTTTCCCTTTCCTTCTAATCCTTGTATTGGGAAGAAAACAGTATGGAAATTTTATTTCTTCATTTTATTGATACGTAGATCTCTGCTTAGAAGACAATTTTAGTTTTAAATTATAAATGTTTTGTTCATTAttcatagaaaactagatttgccatgggatatttataagtgttgcatgaatgaagggttttctagtcaaataagttgaaacacattaggttaaacaaacttggacagttttgtttctggtcatttttagagttctaaattatgattctactcaagaggatattgtatgcggtattttcaaacCAACTCATCCTGCGTCAGGTTGTGGTTACGCTTTGGGAGA
i panPan2.chr15             C 0 I 314
e nomLeu3.chr6              70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1       23094 35072 -    281578 I
e manLeu1.NW_012101289v1       36917 72893 +    138091 I
e cerAty1.NW_012002601v1     1479967 66247 +   1584492 I
e macNem1.NW_012011934v1      367141 9491 +   2379783 I

a score=4230.000000
s hg38.chr15_KI270851v1_alt    88303 15 +    263054 GGAAGCTATAATCTT
s panTro5.chr15              9321382 15 +  83230942 GGAAGCTATAATCtt
i panTro5.chr15             C 0 I 19288
s panPan2.chr15             25826098 15 +  99763055 GGAAGCTATAATCTT
i panPan2.chr15             I 314 C 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1       23094 35072 -    281578 I
e manLeu1.NW_012101289v1       36917 72893 +    138091 I
e cerAty1.NW_012002601v1     1479967 66247 +   1584492 I
e macNem1.NW_012011934v1      367141 9491 +   2379783 I

a score=3135.000000
s hg38.chr15_KI270851v1_alt    88318 35 +    263054 ATACTGAGACTGTAATGAATGTATTAAGGTAATTT
s panPan2.chr15             25826113 35 +  99763055 ATACTGAGACTGTAATGAATGTATTAAAGTAATTT
i panPan2.chr15             C 0 C 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e panTro5.chr15              9321397 19288 +  83230942 I
e gorGor5.CYUI01000141v1       23094 35072 -    281578 I
e manLeu1.NW_012101289v1       36917 72893 +    138091 I
e cerAty1.NW_012002601v1     1479967 66247 +   1584492 I
e macNem1.NW_012011934v1      367141 9491 +   2379783 I

a score=1347750.000000
s hg38.chr15_KI270851v1_alt    88353 5077 +    263054 [encoded data, 5181 characters]
s panTro5.chr15              9340685 5104 +  83230942 [encoded data, 5181 characters]
i panTro5.chr15             I 19288 C 0
s panPan2.chr15             25826148 5009 +  99763055 [encoded data, 5181 characters]
i panPan2.chr15             C 0 M 709
e nomLeu3.chr6              70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1       23094 35072 -    281578 I
e manLeu1.NW_012101289v1       36917 72893 +    138091 I
e cerAty1.NW_012002601v1     1479967 66247 +   1584492 I
e macNem1.NW_012011934v1      367141 9491 +   2379783 I

a score=63872.000000
s hg38.chr15_KI270851v1_alt    93430 797 +    263054 accagaaaaaaaaaaaaaaaaaaaaaga-----gctgggcagggtggctcccgcctgcaatcccagtcactcggaggctgaggcaggagaaccacccaaacccagaggcagaggccgcggggagccgacaccgcaccactgcactccagccctgcaacaagagggaaactacgcctcaaaaaaaaaaaaaGAGAGAGAGAGagagaccggttttcaccatgttgcccaggctggtctagaactcctaggatcaaggg-atccgccacgctcgg-cccgtccaaactcctgggatcaaaagcgtgagccaccacgcca-ggccGATCCTTcctgtcatcccagcactttgagaggccgaggtgggtttacctgaggtccggagttcgagaccagcctggccaacatgatgaaaacccatctctactaaaaatacaaaaaaaaaaaaaaaaaaaaaaaattagatgggtgtgctagcgggtgcctgtaatctcagctactcaggcggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccgagacagcgcaccactgcactccagcctgggtgacaaagtgagactc-cgtctcaaaag----tatatatatataaaaataaaaaatgaaataaaaa-taaatTGGGTGTgtgcgctggctcacgcctgcaattccagcatccccggaggccgaggtgggcggataacctgaggtctggagtttgagatcagcttgcccagcatggagaaaccccgtctctaccaaaaacaaataaaaaaaaattagcagagcaat
s panTro5.chr15              9345789 797 +  83230942 accagaaaaaaaaaaaaaaaaaaaaaaaaaaaggccgggcatggt-gctcccgcctgcaatcccaaccactcggaggctgaggcaggagaaccacccaaacccagagg-agaggccgcggggagcc-acaccgcagcactgcactccagccctgcaacaagagggaaactacgcctc-aaaaaaaaaaaagagaCAGAGAGagagaccggttttcaccatgttgcccaggctggtctagaactccta-gatcaagggaatccgccacgctcggacccgtccaaactcct-ggatcaaaagcgtgagccaccacgccaggGCCGATCTTTcctgtcatcccagcactttgggaggccgaggtgggtttacctgaggtcaggagttcgagaccag-ctggccaacatgatg-aaacccatctctact-aaaatac---aaaaaaaaaataaaaaaaaaattagatgggtgtgctagcgggcgcctgtaatctcagctactcaggcggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccgagacagcgcaccactgcactccagcctgggtgacaaagtgagactcgcgtctcaaaagtatatatatatatataaaaataaaaaatgaaataaaaattaaatTGGGTGTgtgcgctggctcacgcctgcaattccagcatccccggaggccgaggtgggcggataacctgaggtctggagtttgagatcagcttgcccagcatggagaaa-ctcgtctct-ccaaaacaaaataaaaaaaaattagcagagcaat
i panTro5.chr15             C 0 C 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e panPan2.chr15             25831157 709 +  99763055 M
e gorGor5.CYUI01000141v1       23094 35072 -    281578 I
e manLeu1.NW_012101289v1       36917 72893 +    138091 I
e cerAty1.NW_012002601v1     1479967 66247 +   1584492 I
e macNem1.NW_012011934v1      367141 9491 +   2379783 I

a score=280931.000000
s hg38.chr15_KI270851v1_alt    94227 1134 +    263054 gttggtcaggcctgcaatcccagccactccggagactgaggcaggagaactact-aaaaccctggaggcagaagtcgctgcgagcggagacccagccactgcac-tccaccctgggaaacaagagcgaaactccgcctca-aaaaaaaaaGAGAGAGAGAGAGagagaccgggtttcaccatgttgcccagg--cAGgt-ctggaactcctaggctcaagggata---ccccgcgctgggccatccgaagtactgggatcacaagc-gtg-agccaccacaccaggacgatctattc-ctttct-gattaataagttgggccgggagcggtggctcaa--gcctgcaat-cctagcacctcgggaggcctaggcaggtggatcac-ct-gaggtcgggagtttgagaccagcctgac-caacagggagaaaccccatctgtacc-------------aaaataaaaataaaaaaaaaatacaaaattagccgggcttggtggcttatgcctgcaatcccagccactctggaggctgatgcaggacaacgaccgaaacccgggaggcggaagtcgcggcaagcagagacccagccactgcattccagcctgggcaacaagagcgaaactccgtctcaaaacaagacaaaacaaaaagaccaggtttcaccatgttgcccaggcctgtctggaactccaaggcacaagcgatccaccctacttggccgtccaaagtcctgggatcacaagagtgagccaccacgccaggcAGATcaaagcgttgagctgaataaagagttatcttttagcattttgtggagcccgggtagatctgtgcagggggaagcatattacagaagcgagaaacagagagttatttaattgaagcacgcattatg-ttttttttttttttacgtttttaggaaaaatatgttttgtgacttgcatttgtttgtttagtgaccttgcagttgcacagttagggaattagggttttgataatgcctgggaagggagcgataaggctcactagccataggaaaacaggtagtttttttaaaggactaaggctctttctcattctcagggggaattgggttttttttacatacagctgagtttttgcttacacattttttcatttcttttaattcctgttccaATGCCA
s panTro5.chr15              9346586 1154 +  83230942 gttggcagggcctgcaatctcagccactccggagactga-gcaggagaactactaaaaaccctggaggcagaagtcgctgcgagcggaa--ccagcaactgcacatccaccctgggcaacaagagcgaaactccgcctca-taaaaaaaaaaaaaaGAGAGAGagagaccgggtttcaccatgttgcccagagccaggtcctggaatctttagcctcaagggatATCGCCCAGCGCTGG---ATCCAACGTActgggatcacaagctgtgaagccaccacaccaggacgatctattcgctttctggattaataaattggcctgggag-ggt-gctcaagcgcctgcaatgcctagcacctcgggagg-ctaggc-ggt-gatcacgctggaagtcgtgag-ttgagaccagcctgacgcaacagggagaaaccccatctgtagcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatacaaaattagccgggcttggtggcttatgcctgcaatcccagccactctggaggctgatgcaggacaactaccgaaacccgggaggcggaagtcgcggcaagcagagacccagccactgcactccagcctgggcaacaagagcgaaactccgtctcaaaacaacacaaaacaaaaagaccaggtttcaccatgttgcccaggcctgtctggaactccaaggcacaagcgatccaccctacttggccgtccgaagtcctgggatcacaagagtgagccaccacgccaggcAGATcaaagagttgagctgaataaagagttatcttttagcattttgtggagcccgggtagatctgtgcagggggaagcatattacagaagcgagaaacagagagttatttaattgaagcatgcattatgtttttttttttttttacgtttttaggaaaaatatgttttgtgacttgcatttgtttgtttagtgaccttgcagttgcacagttagggaattagcgttttgataatgcctgggaagggagcgataaggctcactagccataggaaaacaggtagtttttttaaaggactacagctctttctcattctcagggggaattgggttttttttacatacagctgagtttttgcttacacattttttcatttcttttaattcctgttccaATCCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25831866 1129 +  99763055 GTTGGTCAGgcctgcaatcccagccactccggagactgaggcaggagaactact-aaaaccctggaggcagaagtcgctgcgagcggagacccagccactgcac-tccaccctgggcaacaagagcgaaactccgcctcataaaaaaaaaaaaaaagagagagagagaCCGGGTTTCACCATGTTGCCCAGG--CAGgt-ctggaactcctaggctcaagggata---ccccgcgctgggccatccaaagtactgggatcacaagc-gtg-agccaccacaccaggacgatctattc-ctttct-gattaataaattgggccgggagcggtggctcaa--gcctgcaat-cctagcacctcgggaggcctaggcgggtggatcac-ct-gaggtcgggagtttgagaccagcctgac-caacagggagaaaccccatctgtacc-------------aaaaaaaacaaaaaaaaaa---acaaaattagccgggcttggtggcttatgcctgcaatcccagccactctggaggctgatgcaggacaactaccgaaacccgggaggcggaagtcgcggcaagcagagacccagccactgcactccagcctgggcaacaagagcgaaactccgtctcaaaacaacacaaaac-aaaagaccaggtttcaccatgttgcccaggcctgtctggaactccaaggcacaagcgatccaccctacttggccgtccgaagtcctgggatcacaagagtgagccaccacgccaggcAGATcaaagagttgagctgaataaagagttatcttttagcattttgtggagcccgggtagatctgtgcagggggaagcatattacagaagcgagaaacagagagttatttaattgaagcatgcattatg---ttttttttttttacgtttttaggaaaaatatgttttgtgacttgcatttgtttgtttagtgaccttgcagttgcacagttagggaattagcgttttgataatgcctgggaagggagcgataaggctcactagccataggaaaacaggtagtttttttaaaggactacagctcttaatcattctcagggggaattgggttttttttacatacagctgagtttttgcttacacattttttcatttcttttaattcctgttccaATCCCA
i panPan2.chr15             M 709 C 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1       23094 35072 -    281578 I
e manLeu1.NW_012101289v1       36917 72893 +    138091 I
e cerAty1.NW_012002601v1     1479967 66247 +   1584492 I
e macNem1.NW_012011934v1      367141 9491 +   2379783 I

a score=483760.000000
s hg38.chr15_KI270851v1_alt     95361 420 +    263054 GCATCCTTGCGGTGCGGTTTCCCAGCGGCTCTCTTGCC----TTGCAGCTTGTGTCGGGAGTTGCAGACAGCCATGGCC-CATGGGCCTGGCGCTGACGGACCCTGGAGCGGTGTCTGAGGGAGGTG-------GGCAAAGCCACTGGCTGGCCCGAGTGCATCCTCACGTAAGTGCACAGATCCCGGGCTCGGGTGCGACTGCGGTCGCACGTGGACACGGGTTGCAGACCCCTGGCAAATTGTGGAGCTGGGGGAAGGTAAGGGGAAATGTAAATCACTTTTCCCCACATTTCAGAG--------GACCTAGGCTATCAAAATTTTAAAAATTGTT-AAAACTTTTACAGTATGGATCTCTCAGTTGAATGTTATTGAAATCAACCTAACCTCAGTTATTCACGCCTATAAGCTCCCCTTGAGGCTTATTACGGCCCCC
s panTro5.chr15               9347740 420 +  83230942 GCATCCTTGCGGTGCGGTTTCCCAGCGGCTCTCTTGCC----TTGCAGCTTGTGTCGGGAGTTGCAGACAGCCATGGCC-CATGGGCCTGGCGCTGACGGACCCTGGAGCGGTGTCTGAGGGAGGTG-------GGCAAAGCCACTGGCTGGCCCGAGTGCATCCTCACGTAAGTGCACAGATCCCGGGCTCGAGTGCGACTGCGGTCGCACGTGGACACGGGTTGCAGACCCCTGGCAAATTGTGGAGCTGGGGGAAGGTAAGGGGAAATGTAGATCACTTTTCCCCACATTTCAGAG--------GACCTAGGCTATCAAAATTTTAAAAATTGTT-AAAACTTTTACAGTATGGATCTCTCAGTTGAATGTTATTGAAATCAACCTAACCTCAGTTATTCACACCTATAAGCTCCCCTCGAGGCTTATTACGGCCCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25832995 420 +  99763055 GCATCCTTGCGGTGTGCTTTCCCAGCGGCTCTCTTGCC----TTGCAGCTTGTGTCGGGAGTTGCAGACAGCCATGGCC-CATGGGCCTGGCGCTGACGGACCCTGGAGCGGTGTCTGAGGGAGGTG-------GGCAAAGCCACTGGCTGGCCCGAGTGCATCCTCACGTAAGTGCACAGATCCCGGGCTCGAGTGCGACTGCGGTCGCACGTGGACACGGGTTGCAGACCCCTGGCAAATTGTGGAGCTGGGGGAAGGTAAGGGGAAATGTAGATCACTTTTCCCCACATTTCAGAG--------GACCTAGGCTATCAAAATTTTAAAAATTGTT-AAAACTTTTACAGTATGGATCTCTCAGTTGAATGTTATTGAAATCAACCTAACCTCAGTTATTCACACCTATAAGCTCCCCTCGAGGCTTATTACGGCCCCC
i panPan2.chr15             C 0 C 0
s macFas5.chr7              170121829 431 - 171882078 GCCTCCTTGCGGTGCGCTTTCCCAGCGGCTCTTTGGCCCCGCTTGCCGCTTGTGTGGGGAGTTGGAGACAGCCCTGGCCACGCGGGCCTGGCGCTGACAGACCCTGCAGCGGTGTCTGACGGGGGTCGGGGGTGGGCAAAGCCACCGGCT-GCCCCAGCACATCCTCACATAAGTGCGCAGATCCCGGGCTCAGGTGCGACTGGGGTGGCACGTGGACGCAGGTTGCAGGCCCCTGGCAAATTGCTGAGCTGGGGGAAGGTAAGGGGAAATGTAATTCACTTTTCCCCACATTTCAGAG--------GACCTAGGCTACCAACAGTTTAAAAATTGTT-AGAATTTTTACAGTATGGCTCTGTCCGTTGAATGTTATTGAAATCAACCGAACCTCAGTTATTAACGCCTAGAAGCTCCCCTTGAGGCTTGTTACGGCCCCC
i macFas5.chr7              N 0 C 0
s chlSab2.chr5               36239779 433 -  75399963 GCATCCTTGCTGTGCG-TTTCCTAGCGGCTCTCTCGTCTTGTTTGCAGCTTGTGTCCAGAGTAGCAGACAGCCATGGCCCCGCGGGCCTGGCGCTGACAGACCCTGGAGCGGTGTCTCACAGAGGTC-------GGCAAAGCCACCGGCTGGCACCAGTGCATCCTCACGTAAGTGCGCAGATCCCGAGCTCGGGTGGGACTGGGGTCGCACGTGGACGCGAGTTGCAGACTCCTGGCAAATTGTGGAGCTGAGGGAAGGTAAGGGGAAATGTAAACCACTTTTCCCCACATTTCAGAGTTTATACTTTCCTAGGCTATCAAAATTTTCAAAACGGTTCAAAATTTTTACAGTATGGCTCTCTCAGTTGAATGTTATTGAAATGAACCTAACCTCAGTTATTAACGCCTAGAAGCTCCCCTTGAGGCTTATTACTGCCCCC
i chlSab2.chr5              N 0 I 10
s colAng1.NW_012115722v1      1372195 431 +   5228064 GCATCCTTGCTGTGCG-TTTCCTAGGGGCTCTCTTGTCTTGCTTCCAGCTTGCGTCCGGAGTAGCAGACAGCCATGGCCCCGCGGGCCTGGCGCTGACAGACCCTGGAG-GGTGTCTTACAGAGGTC-------GTCAGAGCCACCGGCTGGCACCAGTGCATCCTCACGTAAGTGCGCAGATCCCGAGCTCGGGTGGGACTGGGGTCGCACGTGGACGCGAGCTACAGACTCCTGGCAAATTGTGGAGCTGAGGGAAGGTAA-GGGAAATGTAAACCACTTTTCCCCACATTTCGGAGTTTATACTTTCCTAGGCTATCAAAATTTTCAAAATGGTTAAAAATTTTTACAGTATGGCTCTCTCAGTTGAATGTTATTGAAATGAACCTAACCTCAGTTATTAACGCCTAGAAGCTCCCTTTGAGGCTTATTACTGCCCCC
i colAng1.NW_012115722v1    N 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1        23094 35072 -    281578 I
e manLeu1.NW_012101289v1        36917 72893 +    138091 I
e cerAty1.NW_012002601v1      1479967 66247 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=13460.000000
s hg38.chr15_KI270851v1_alt     95781 14 +    263054 ATCCCCCTACACAC
s panTro5.chr15               9348160 14 +  83230942 ATCCCCCTACACAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25833415 14 +  99763055 ATCCCCCTACACAC
i panPan2.chr15             C 0 C 0
s macFas5.chr7              170122260 14 - 171882078 ATCCCCCTACACAC
i macFas5.chr7              C 0 I 1
s colAng1.NW_012115722v1      1372626 14 +   5228064 ATCCCCCTACACAC
i colAng1.NW_012115722v1    C 0 I 13
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1        23094 35072 -    281578 I
e manLeu1.NW_012101289v1        36917 72893 +    138091 I
e cerAty1.NW_012002601v1      1479967 66247 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e chlSab2.chr5               36240212 10 -  75399963 I

a score=2176845.000000
s hg38.chr15_KI270851v1_alt     95795 1758 +    263054 AACTGTGTTGGTTTCTCCTTCCGCC--TGTGCTCCTAAAGCACTCAGTGTTTACCTGCCATCATACTTTATTGAAAGCACAAACTTGTCACTTGTCTGTCTACCCC-ACTAAGCTTCTTGAGAATTAGAACTTTCATGTCTCTTCCCAACACAAACCTTTTATGTGTATTTTGTTGAAGAActtcaaatatgacctataaaattatgactcatttatgtttcaaactccaacctctcccttgagttccTTGCTCACAAGCAACTCCAGACTGAGCTTAGTTGGAATTCAGTAGCGCACAACTGGGATATCCGCACCGTACGGCTTTTAACAATTTTTTAAATTTTGGTCCTCTCAGCATCACAAATTCACTGTGTCCAAAATACAGTAGAATGTTGTTTCTACCCACCTACACTCTGCCATCCGCTGAAGTCctttccccttgctccaccactcaagccttgcctatcgcactaaatggcagttctgtctctccagttgctcgcacataaaactaggctgctattttgatgtcttcacttttctc-tattctgtatctaattccttagcaatcctgtcagttctacctccaaactgtactcagcatattcactgctctaactccagcttaaatcaccatcatcctttgcctggaatgctgcatcaaccttctaatcactctactttcctcctcctcct---tcctccctttcttcttccttcgtataaatcatcatttcatccttctgcttaaaatcttctcacattttcttattacacttaaaacggcaaactcttacccttgagccctgcagaatttggctcccatcagtctctccaacttcaccttctgcctccttcacgctatagccatgctcacttttttattcctcaggcttaccaagctcaattgcatcttagagaatttgttcttgctgtttcttccgcctggaatacatgtttcccaatctttataagactatacttgtctgtaagtttcatctcagatgtcacatctaggagaggttttccttgaccACTGTAGCCAAAGCAAATGTTGATCATTGAGTGAATAAGG----GAATGAATGAATGGAGTGGTATATAATGTAGCAGAGTAGAAAATTTAAGGCTAATTCTCTATATATCTCCAAGCAAATAGATTTGTAATGCTTTTCCTGCCAACAATCTATACAGCTGATTCACAAATACTTGGTTGACAGGTTTTATATATCATTGTGGCTCATCAGCTTATATGTTGTTGGGGCCAGAATCTATACTT-ACACTTTATTCAAATTTGATTTTACAGAAGAGTTGAGGTTTTTATTTTTCTTTTAATTAAGAGGGCTGTGAAATTATTATCTATAATTCTAAATCTCATTTAATTCCTCCCAATAGGTTTCAAGATGGATTGGAACCAAAGTTCACTTCTTTAACAAAAGTGCTTTATGACTTTAATAAAAC--AGTAGAGAATGGTAGAATCCATGGCAGCCCTTTACAAAAACTTGTGATAGAAAGTTTTGATGATGAGCAGACTTTGCAACAACTGGAATTGCAAAATGAAGCAATTTTACAGTGCTTCCAGAATGCGGTTAGTGAAAGAAAGATGAAGATATCAGTCTT--CTCCCAGAGAGTGAAGAACAGGAGCATGAAGAGGCTGGTTCAGAAACAGAGGCTGATGGCCAGGAGGACCTAGAAGATTTAGAGGAGGAGGAGGACGTGTCAGATATGGGTGGTGACAATCCTGAAATGGGTGAGAGAGCTAAAAAC
s panTro5.chr15               9348174 1756 +  83230942 AACTGTGTTGGTTTCTccttccgcc--tgtgctcctaaagcactcagtgtttacctgccatcatactttattgaaagcacaaacttgtcacttgtctgtccacccc-actaagcttcttgagaattagaactttcatgtctCTTCCCAACACAAACGTTTTGTGTGTATTTTATTGAAGAActtcaaatatgatctataaaattatgactcatttacgtttcaaactccaacctctcccttgagttccTTGCTCACGAGCAACTACAGACTGAGCTTAGCTGGAATTCGGTAGCGCACAACTGGGATATCCGCACCGTACGGCTTTTAACAATTTTTTAAATTTTGGTCCTCTCAGCATCACAAATTCACTGTGTCCAAAATACAGTAGAATGTTGTTTCTACCCACCTACACTCTGCCATCCGctgaagtcctttccccctgctccaccactcaagccttgcctatcgcagtaaatggcagttctgtctctccagttgctcacacataaaactaggctgctattttgatgtcttcacttttctc-tattctgtatctaattccttagcaatcctgtcagttctacctccaaactgtactcagcatattcactgctctaactccagcttgaatcaccatcatcctttgcctggaatgctgcatcaaccttctaatcactctactttcctcctcctcct---tcctccctttcttcttccttcgtataaatcatcatttcatccttctgcttaaaatcttctcacgttttcttattacacttaaaatggcaaactcttacccttgagccctgcagaatttggctcccatcagtctctccaacttcaccttctgcctccttcacgctatagccatgctcacttttttattcctcaggcttaccaagctcaattgcatcttagagaatttgttcttgctgtttcttccgcctggaatacatgtttcccaatctttataagactatacttgtctgtaagtttcatctgagatgtcacatctaggagaggttttccttgaccactgtagccaaaGCAAATGTTGATCATTGAGTGAATAAGG----GAATGAATGAATGGAGTGGTATATAATGTAGCAGAGTAGATAATTTAAGGCTAATTCACTATATATCTCCAAGCAAATAGATTTGTAATGCTTTTCCTGCCAACAATCTATACAGCTGATTCACAAATACTTGGTTGACAGGTTTTATATATCATTGTGGCTCATCAGCTTATATATTGTTGGGGCCAGAATCTATACTT-ACACTTTATTCAAATTTGATTTTACAGAAGAGTTGAGGTTTTTATTTTTCTTTTAATTAAGAGGGCTGTGAAATTATTATCTATAATTCTAAGTCTCATTTAATTCCTCCCAATAGGTTTCAAGATGGATTGGAACCAAAGTTCACTTCTTTAACGAAAGTGCTTTATGACTTTAATAAAAC--AGTAGAGAATGGTAGAATCCATGGCAGCTCTTTACAAAAACTTGTGATAGAAAGTTTTGATGATGAGCAGACTTTGCAACAACTGGAACTGCAAAATGAAGCAATTTTACAGTGCTTCCAGAATGCGGTTAGTGAAAGAAAGATGAAGATATCAGTCTT--CTCCCAGAGAGTGAAGAACAGGAGCATGAAGAGGCTGGTTCAGAGACAGAGGCTGATGGCCAGGAGGACCTAGAAGATTTAGAGGAGGAGCAGGACGTGTCAGATATGGGTGGTGACAATCCTGAAATGGGTGAGAGAGCT--AAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25833429 1755 +  99763055 AACTGTGTTGGTTTATCCTTCCGCC--TGTGCTCCTAAAGCACTCAGTGTTTACCTGCCATCATACTTTATTGAAAGCACAAACTTGTCACTTCTCTGTCCACCCC-ACTAAGCTTCTTGAGAATTAGAACTTTCATGTCTCTTCCCAACACAAACGTTTTGTGTGTATTTTATTGAAGAActtcaaatatgatctatgaaattatgactcatttatgtttcaaactccaacctctcccttgagttccTTGCTCACAAGCAACTACAGACTGAGCTTAGCTGGAATTCAGTAGCGCACAACTGGGATATCCGCACCGTACGGCTTTTAACAATTTTTTAAATTTTGGTCCTCTCAGCATCACAAATTCACTGTGTCCAAAATACAGTAGAATGTTGTTTCTACCCACCTACACTCTGCCATCCGctgaagtcctttccccctgctccaccactcaagccttgcctatcgcagtaaatggcagttctgtctctccagttgctcacacataaaactaggctgctattttgatgtcttcacttttctc-tattctgtatctaattccttagcaatcctgtcagttctacctccaaactgtactcagcatattcactgctctaactccagcttaaatcaccatcatcctttgcctggaatgctgcatcaaccttctaatcactctactttcctcctcctcct---tcctccctttcttcttccttcgtataaatcatcatttcatccttctgcttaaaatcttctcacgttttcttattacacttaaaatggcaaactcttacccttgagccctgcagaatttggctcccatcagtctctccaacttcaccttctgcctccttcacgctatagccatgctcacctttttattcctcaggcttaccaagctcaattgcatcttagagaatttgttcttgctgtttcttccgcctggaatacatgtttcccaatctttataagactatacttgtctgtaagtttcatctcagatgtcacatctaggagaggttttccttgaccACTGCAGCCAAAGCAAATGTTGATCATTGAGTGAATAAGG----GAATGAATGAATGGAGTGGTATATAATGTAGCAGAGTAGATAATTTAAGGCTAATTCACTATATATCTCCAAGCAAATAGATTTGTAATGCTTTTCCTGCCAACAATCTATACAGCTGATTCACAAATACTTGGTTGACAGGTTTTATATATCATTGTGGCTCATCAGCTCAT-CATTGTTGGGGCCAGAATCTATACTT-ACACTTTATTCAAATTTGATTTTACAGAAGAGTTGAGGTTTTTATTTTTCTTTTAATTAAGAGGGCTGTGAAATTATTATCTATAATTCTAAGTCTCATTTAATTCCTCCCAATAGGTTTCAAGATGGATTGGAACCAAAGTTCACTTCTTTAACGAAAGTGCTTTATGACTTTAATAAAAC--AGTAGAGAATGGTAGAATCCATGGCAGCTCTTTACAAAAACTTGTGATAGAAAGTTTTGATGATGAGCAGACTTTGCAACAACTGGAACTGCAAAATGAAGCAATTTTACAGTGCTTCCAGAATGCGGTTAGTGAAAGAAAGATGAAGATATCAGTCTT--CTCCCAGAGAGTGAAGAACAGGAGCATGAAGAGGCTGGTTCAGAGACAGAGGCTGATGGCCAGGAGGACCTAGAAGCTTTAGAGGAGGAGCAGGACGTGTCAGATATGGGTGGTGACAATCCTGAAATGGGTGAGAGAGCT--AAAC
i panPan2.chr15             C 0 C 0
s macFas5.chr7              170122275 1750 - 171882078 AACTGTATTGGTTTCTCCTTCCGCCTTTGTGCTCCTAAAGCACTCAGTGTTTACCTGTCATCATACTTCATTGAAAGTACAAACTTGTCACTTGTCTGTCCACCCCAACTAAGCTTCTTGAGAGTTAGAACTTTCATGTCTCTTCCCAGCACAAGCGTTTTATGCGTATTTTGTTGAAGAActtcaaatatgatctataaaattatgactcatttatatttcaaactccaacctctcccttgagttcctggctcAC-AGCAACTACAGACTGAGCTTAGTTGGAATTCAGTAGCACACAACTGGGATATCCGCACTGTCCGGCTTTTAACAATTTTTAAAATTTTGGTACTGTCAGCATCGCAAATTCA--GTGTCCAAAATAGAGTAGAATGTTGTTTCTACCCACCCATACTCTGCCATCCCCTGAAGTCCTTTCCCCAtggtccac--ctcaagccttgcctatcgcagtaaatggcagttctctctttccagttgctcacacataaaacgaggctgctattttgatgtcttcatttttctc-tattctgtatctaattccttagcaatcctgtcagttctacctccaaactgtactcagcatattcactgctctaactccagcttaaatcaccatgatcctttgcctggaatgctgcatcaaccttctaatcactctactttcctctccctcct---tcctccctttcttcttccttcgtgtaaatcatcatttcatccttctgcttaaaatcttctcttgttttcttattacacttaaaatggcaaactc-ttaccttgagccctgcggaatttggctgccatcagtctctccagcttcaccttctgcctccttcacactccagccccgctcactttttcattcctcaggcttcccaagctcaattgcatcgtagagaatttgttcttgctgtttcttctgcctggaatacgtgtttcccagtctttataggactatccttacctgtaggtttcacctcagatgtcacatctaagagaggttttccttgaccactgtaGCCAAAGCAAATGTTGATCACGGAAGGAAAAAGG----GAATGACTGAGTGGAGTGGTGTGTAGTGTCGCAGAGTTGATAATTTAAGGCTAATTCACTATGTATCTCCAAGCAAAGAGATTTGTAATGCTTTTCCTGCCTAAAATCTATACAGCTGATTCACAAATACTTGGTTGACAGGTTTTATAGATCAGTGTGACTCATCAGCTTATATGTTGTTGGGGCCAGAATCTATACTTAACACTTCATTCAAATTTGATTTTACCGAAGAATTGGGGTTTTCATTTTTCGTTTAATTAACAGAGCTGTGAAATTATTATCTGTAATTCTAAATCTCATTTAATTCCTCCCAATAGGATGTAAGACGGATTGGCATCAAAGTTCACTTCTTTAACAAAAGTGTTTTATGACTTTAATAAAAT--ATTAGAGAATAGTAGACTCCATGGAAGCCCTTTACAAAAACTTGTGATAGGAAGTTTTGATGATGAGCAGATTTTGCAACAACTGGAATTGCAAAATGACCCAATTTTACAAAGCTTCCAAAATGCAGTTAGTGAAACAAAGATGAGGATATAAG---T--CTCCCAGAGAGTGAAGAACAGGAGTGTGAAGAGGATGGTTCAGAGACAGAGGCTGGTGGCCAGGAGGACCTAGAAGATTTAGAGGAGGAAGAGGAAGTGTCAGATATGGGTGGTGACAATCCTGAAGTGAGTGAGACAGC---AAAC
i macFas5.chr7              I 1 C 0
s chlSab2.chr5               36240222 1754 -  75399963 AACTGTGTTGGTTTCTCCTTCCGCCTATGTGCTCCTAAGGCACTCAGTGTTTAC----TGTCATACTTTATTGAAAGTACATATTTGTCACTTGTTTGTCCACCCCAACTAAGCTTCTTGAGAATTAGAACTTTCATGTCTGTTCCGTGCACAAGCGTTTTATGCGTACTTTGTTGAAGAACTTCAAATATGATCTGTAAAATTATGACTCATTT--------AACTCCAACCTCTCCTTTGAGTCCCTGGCTCAC-AGCAACTACAGACTGAGCTTAGTTGGAATTCAGTAGCACACAACTGGGATATCCGCACTGTAAGGCTTTTAACAATTTCTTAAATTTTGGTACCTTCAACATCGCAAATTCACTGTGTCCAAAATAGAGTAGAATGTTGTTTCTACCCACCTGTACTCTGCCATCCCCTGAAGTCCTTTCCCCAtgctccaccactcaagccttgcctatcacagtaaatggcagttctgtctttccagttgctcacacataaaactaggctgctattttgatgtcttcatttttttc-tattctgtatctaattccttagcaatcctgtcagttctacctccaaactgtactcagcatattcactgctctaactccagcttaaatcaccatcatcctttgcctggaatgctgcatcaaccttctaatcactctactttcctcctcctcct---tcctccctttcttcttccttcgtgtaaatcatcatttcgtccttctgcttaaaatcttctcatgttttcttattacacttaaaatggcaaactctttcccttgagccctgcagaatttggctcccttcagtctctccagcttcgccttctgcctccatcacactctagccatgctcatttttttattcctttggcttaccaaactcaattgcatcttagagaatttgttcttgctatttcttctgcctggaatacatgttacccaatctgtatgagactatccttatctgtaggtttcatctgagatgtcacatctaagagaggttttccttgaccactgtaGCCAAAGCAAATGTTGATCACtgaagaaataagggaatgaatgaatgaatggagtgatgtataatgTGGCAGAGTTGATAATTTAAGGCTAATTCACTATATATCTCCAAGCAAGTCGATTTATAATGCTTTTCCTGCCTAAAATCTATACAGCTGATTCACAAATCCTTGGTTGACAGGTTTTATATATCATTGTGGCTCATCAGCTTATATGTTGTTGGGGCCAGCATCTATACTT-ACACTTCATTCAAATTTGATTTTACAGAAGAGTTGGAGTTTTTATTTTTCTTTTAATTAAGAGGGCTGTGAAATTATTACCTATAATTCTAAATCTCATTTAATTCCTCCCAATAGGATTCAAGATGGACTGGCATCAAAGTTCACTTCTTTAACAAAAGTACTTTATGACTTTAATAAAATTAATTAGAGAATAGTGGGATCCGTGGAAGCCCTTTATAAAAACTTGTGATAGAAAGTTTTGATGATGAGCAGACTTTACAACAACTGGAAATGCGAAATGAACCAATTTTACAACACTTCCAAAATGCAGTTAGTGAAACGCAGATGAAGATATCAGTCTT--CTCCCAGAGAGTGAAGAACAGAAGCGTGAAGAGGCTGGTTCAGAGACAGAGGCTGGTGGCCAGGAGGACCTAGAAGATTTAGAGGAGAAAGAGGAAGTGTCAGATATGGGTGGTTACAATCCTGAGGTGGGTAAGAAAGCTAAAAAC
i chlSab2.chr5              I 10 C 0
s colAng1.NW_012115722v1      1372653 1750 +   5228064 AACTGTGTTGGTTTCTCCTTccgcctttgtgctcctaaagcactcagtgtttacctgtcatcatactttattgaaagtacaaacttatcacttgtctgtccaccccaactaagcttcttgagagttagaactttcatgtctCTTCCCAGCACAAGCGTTTTATGCGTACTTTGTTGAAGAATTTCAAATATGATCTATAAAATTATGACTCATTT--------AACTCCAACCTCTCCCTTGAGTCCCTGGCTCAC-AGCAACTACAGACTGAGCTTAGTTGGAATTCAGTAGCACACAACTGGGATATCCGCACTGTAAGGCTTTTAACAATTTTTTAAATTTTGGTACCCTCAGCATCGCAAATTCA--GTGTCCAAAATAGAGTAGAATGTTGATTCTACCCACCTGTACTGTGCCATcccctgaagtcctttccccatgctccaccactcaagccttgcctatcgcagtaaatggcagttctgtctttccagttgctcacacataaaaccaggctgctattttgatgtcttcatttttctcttattctgtatctaattccttagcaatcctgtcagttctacctctaaactgtactcagcatattcactgctctaactctagcttaaatcaccatcagcctttgcctggaatgcttcatcaaccttctattcactctactttcctcctcctccttcctcctccctttcttcttccttcgtgtaaatcatcatttcgtccttctgcttaaaatcttctcatgttttcttgttacacttaaaatggcaaactcttacccttgagcactgcagaatttggctcccttcagtctctccagcttcgtcttctgcctccatgacactccagccatgctcg-ttttttattccttcggcttaccaaacgcaattgcatcttagagaatttgttcttgctgtttcttctgcctggaatacatgttacccaatctgtataagactatccttatctgtaggtttcatctgagatgtcacatctaagagaggttttccttgaccactgtaGCCAAAGCAAATGTTGATCACtgaagaaataagg----gaatgaatgaat-gaatgatgtataatgTAGCTGAGTTGATAATTTTAGGCTAATTCACTATATATCTCCAAGAAAGTCGATTTATAATGCTTTTCCTGCCTAAAATCTATACAGCTGATTCACAAATCCTTGGTTGACAGGTTTTATATATCATTGTGGCTCATCAGCTTATAGGTTGTTGGGGCCAGCATCTATACTT-ACAC----TTCAAATTTGATTTTACAGAAGAGTTGGAGTTTTTATTTTTCTTTTAATTAAGAGGGCTGTGAAATTATTACCTATAATTCTAAATCTCATTTAATTCCTCCCAATAGGATTCAAGATGGACTGGCATCAAAGTTCACTTCTTTAACAAAAGTACTTTATAACTTTAATAAAAT--ATTAGAGAATAGTGGGATCCGTGGAAGCCCTTTATAAAAACTTGTGATAGAAAGTTTTGATGATGAGCAGACTTTGCAACAACTGGAATTGCAAAACGAACCAATTTTACAACGCTTCCAAAATGCAGTTAGTGAAACAGAGATGAAGATATCAGTCTTCACTCCCAGAGAGTGAAGAACAGGAGCGTGAAGAGGCTGGTTCAGAGACAGAGGCTGGTGGCCAGGAGGACCTAGAAGATTTAGAGGAGAGAGAGGAAGTGTCAGATATAGGTGGTGACAATCCTGAAGTGGGTAAGAAAGCTAAAAAC
i colAng1.NW_012115722v1    I 13 I 4899
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1        23094 35072 -    281578 I
e manLeu1.NW_012101289v1        36917 72893 +    138091 I
e cerAty1.NW_012002601v1      1479967 66247 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=3730.000000
s hg38.chr15_KI270851v1_alt     97553 4 +    263054 TCAA
s panTro5.chr15               9349930 4 +  83230942 TCAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25835184 4 +  99763055 TCAA
i panPan2.chr15             C 0 C 0
s macFas5.chr7              170124025 4 - 171882078 TCAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36241976 4 -  75399963 TCAA
i chlSab2.chr5              C 0 I 2117
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1        23094 35072 -    281578 I
e colAng1.NW_012115722v1      1374403 4899 +   5228064 I
e manLeu1.NW_012101289v1        36917 72893 +    138091 I
e cerAty1.NW_012002601v1      1479967 66247 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=3018.000000
s hg38.chr15_KI270851v1_alt     97557 6 +    263054 GCAAAT
s panTro5.chr15               9349934 6 +  83230942 GCAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25835188 6 +  99763055 GCAAAT
i panPan2.chr15             C 0 C 0
s macFas5.chr7              170124029 6 - 171882078 GCAAGT
i macFas5.chr7              C 0 I 4271
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1        23094 35072 -    281578 I
e colAng1.NW_012115722v1      1374403 4899 +   5228064 I
e manLeu1.NW_012101289v1        36917 72893 +    138091 I
e cerAty1.NW_012002601v1      1479967 66247 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e chlSab2.chr5               36241980 2117 -  75399963 I

a score=1146.000000
s hg38.chr15_KI270851v1_alt     97563 4 +    263054 TCAG
s panTro5.chr15               9349940 4 +  83230942 TCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25835194 4 +  99763055 TCAG
i panPan2.chr15             C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1        23094 35072 -    281578 I
e colAng1.NW_012115722v1      1374403 4899 +   5228064 I
e manLeu1.NW_012101289v1        36917 72893 +    138091 I
e cerAty1.NW_012002601v1      1479967 66247 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e chlSab2.chr5               36241980 2117 -  75399963 I
e macFas5.chr7              170124035 4271 - 171882078 I

a score=2000.000000
s hg38.chr15_KI270851v1_alt     97567 2 +    263054 gg
s panTro5.chr15               9349944 2 +  83230942 gg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25835198 2 +  99763055 gg
i panPan2.chr15             C 0 C 0
s cerAty1.NW_012002601v1      1546214 2 +   1584492 gg
i cerAty1.NW_012002601v1    I 66247 C 0
s manLeu1.NW_012101289v1       109810 2 +    138091 gg
i manLeu1.NW_012101289v1    I 72893 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1        23094 35072 -    281578 I
e colAng1.NW_012115722v1      1374403 4899 +   5228064 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e chlSab2.chr5               36241980 2117 -  75399963 I
e macFas5.chr7              170124035 4271 - 171882078 I

a score=2639.000000
s hg38.chr15_KI270851v1_alt     97569 3 +    263054 cca
s panTro5.chr15               9349946 3 +  83230942 cca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25835200 3 +  99763055 cca
i panPan2.chr15             C 0 C 0
s macFas5.chr7              170128306 3 - 171882078 ctg
i macFas5.chr7              I 4271 C 0
s cerAty1.NW_012002601v1      1546216 3 +   1584492 ccg
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1       109812 3 +    138091 ccg
i manLeu1.NW_012101289v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1        23094 35072 -    281578 I
e colAng1.NW_012115722v1      1374403 4899 +   5228064 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e chlSab2.chr5               36241980 2117 -  75399963 I

a score=7781.000000
s hg38.chr15_KI270851v1_alt     97572 5 +    263054 ggcgc
s panTro5.chr15               9349949 5 +  83230942 ggcac
i panTro5.chr15             C 0 I 4678
s panPan2.chr15              25835203 5 +  99763055 ggcac
i panPan2.chr15             C 0 I 4594
s macFas5.chr7              170128309 5 - 171882078 ggcat
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1546219 5 +   1584492 ggcac
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1       109815 5 +    138091 ggcac
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1379302 5 +   5228064 ggcgt
i colAng1.NW_012115722v1    I 4899 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01000141v1        23094 35072 -    281578 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e chlSab2.chr5               36241980 2117 -  75399963 I

a score=574649.000000
s hg38.chr15_KI270851v1_alt     97577 287 +    263054 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacgaggtcaggagatcgagaccatcctggctaacaaggtgaaaccccatctctactaaacatac-aaaaaattagccaggcgtggtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatgccatgaacccgggaggtggagcttgcagtgagcctagatcacgccactgcagtccag-ctgggtggcagagtgagagactgcatctcaaa--aacaaaa----aCAA--------------------c
s panTro5.chr15               9354632 287 +  83230942 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaacatac-aaaaagttagccaggcgtggtggcaggtgcctatagtcccagctactcgggaggctgaggcaggagaatgccatgaacccgggaggtggagcttgcagtgagcctagatcacgccactgcagtccag-ctgggtggcagagtgagagactgcatctcaga--aacaaaa----acaa--------------------c
i panTro5.chr15             I 4678 C 0
s panPan2.chr15              25839802 287 +  99763055 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaacatac-aaaaagttagccgggcgtggtggcaggtgcctatagtcccagctactcgggaggctgaggcaggagaatgccatgaacccgggaggtggagcttgcagtgagcctagatcacgccactgcagtccag-ctgggcggcagagtgagagactgcatctcaaa--aacaaaa----acaa--------------------c
i panPan2.chr15             I 4594 C 0
s gorGor5.CYUI01015853v1         1931 290 +    551209 ggtggctcatgcctgtaatcacagcactttgggaggccaaggtggatggatgacaagttcaggagattgagaccatcctggctaacatggtgaaacccc-tctctactaaaaatac-aaaaaattagccgggcatggtggcgggctcctgtagtcccagctacttgggaggc-gaggcaggagaatggcatgaacccaggaggtggagctttcagtgagccgaga-cacgccactgcactccag-cctgggcacagagtgagagactccatctcaaaataataaaaTAATATAT--------------------T
i gorGor5.CYUI01015853v1    n 35072 C 0
s macFas5.chr7              170128314 287 - 171882078 ggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcagatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccgtccctactaaaaatac-aaaaaattagccgggcatggtggcgggcacctgtagtcccagctactcaggaggctgaggtaggagaatggtgtgaacccgggaggcggagcttgcagtgagcctacatcgtgccactgcactccagcctgggcgacagagtgagagactccatttcaaa--aaaaaaa----aaga---------------------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1546224 305 +   1584492 agtggctcacgtctgtaatcccagcactttgggaggtcaaggcaggcggatcatgaggtcaggagatccaggccatc----ctaacacagtgcaaccccatctctactaaaaatacaaaaaaattagctgggtgtggtggtggacacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaaccggggaggcagagcttgcagtgagcctagattgcgccactgcactccagcctgggtgacagagtgagagactccatctcaaa--aaaaaaa----aaaaaaaagaaagaaagaaaAAAAA
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1       109820 303 +    138091 agtggctcacatctgtaatcccagcactttgggaggtcaaggcaggcggatcatgaggtcaggagatccagggcatc----ctaacacagtgcaaccccatctctactaaaaatacaaaaaaattagctgggtgtggtggtggacacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtcaaccgggaaggcagagcttgcagtgagcctagattgcgccactgcactccagcctgggtgatagagtgagagactccatctcaaa--aaaaaaa----aaaa--aaaaaagaaagaaaaaAAA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1379307 291 +   5228064 gatggctcgtgcctgtaatctcagcactctgggaggccaaagtgggcagatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccatctttactaaaaattc-aaaaaattagctgggcgtggtggcgagcgcctgtagtcccagctactctggaggctgaggcaggagaatggcttgaacccgggaggcagagcttgcagtgagccaagatcgtgccactgcactccagccggggctacagagtgagagacgccatctaaaa--aaaaaaa----aaaa--aaaa---------------
i colAng1.NW_012115722v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e chlSab2.chr5               36241980 2117 -  75399963 I

a score=2429919.000000
s hg38.chr15_KI270851v1_alt     97864 891 +    263054 aattacttaactttaggatgctccaataatcaaaattgat-agtggcttgtgaacagatagattacttgaatagaatagagcccagaaataaacccaaatgcttctgggggagtttggtacattataaacatgacattttaaatcaatgaggaaaagaaatcatttGCAGCTCA-CCCCACCTTGCACAGCAGGAATAGGAAGTCATTGGCAGAATAAAAAGATGGTAAGAACAGAACAGAATTGTAGAACAGTACATTTCTTGCTTCCCCACTTTTCAAAGTATTTT-----TTGCTTTTTCACAAATGTAAGTGTAATTTTATTTTCTAAATGTATACTAATTCTTTTCTTCTCTTTCTTAGATGAATGACAAAAATTACATCTTTAGAAAAAGAGTTGTTAG-AAAAAAGCCTTGGCTGCATGTGGGGGAAGTGACAGCACAGAAGAGACCAGAGAAGAGCCTCCTGGAGGAGAGCCTGCACTTTGACCATGCTGTCCGGATGGGTGCAGTGCTCTTTTCTGCAAAGTGTTCACTTCTCTGCTTTTTCTGTGGTCCCATTTCATAGAAAGATTTGGGGTGATGTttc-tttccctcaac-ttttattttgaaaacttgcaaacacagaaaagttgataaaatcatacagtgaacatctgtatgctattcaactggattcactagttaatgttttgtcacacttgttttctgtcttctgcgtatggaagattgtatatgtgccctttttccctctgaatcatttcaaagtaagttggcagtatcagagcatttcactgttaagtactttcgcagatatcttctaggaaccaggac-ttctcctatataatcacaataccattaatccacccccaaaatttaacatcaatacactaatgat
s panTro5.chr15               9354919 891 +  83230942 aaTTACTTAACTTTAGGATgctccaataatcaaaattgat-agtggcttgtgaacagatagattacctgaatagaatagagcccagaaataaacccaaatgcttctggGGGAGTTTAGTGCATTATAAACATGACATTTTAAATCAATGAGGAAAAGAAATCATTTGCAGCTCA-CCCCACCATACACAGCAGGAATAGGAAGTCATTGGCAGAATAAAAAGATGGTAAGAACAGAACAGAATTGTAGAACAGTACATTTCTTGCTTCCCCACTTTTCAAAGTATTTT-----TTGCTTTTTCACAAATGTAAGTGTAATTTTATTTTCTAAATGTATACTAATTCTTTTCTTCTCTTTCTTAGATGAATGACAAAAATTACATCTTTAGAAAAAGAGTTGTTAG-AAAAAAGCCTTGGCTGCATTTGGGGGAAGTGACAGCACAGAAGAGACCGGAGAAGAGCCTCCTGGAGGAGAGCCTGCACTTTGACCATGCTGTCCGGATGGGTGCGGTGCTCTTTTCTGCAAAGTGTTCACTTCTCTGCATTTTCTATGGTCCCATTTCATAGAAAGATTTGGGGTGATGTttc-tttccctcaac-ttttattttgaaaacttgcaaacacagaaaagttgataaaatcatacagtgaacatctgtatgctattcaactggattcactagttaatgttttgtcacacttgttttctgtcttctgcgtatggaagattgtatatgtgccctttttccccctgaatcatttcaaagtaagttggcagtatcagagcatttcactgttaagtactttcgcagatatcttctaggaaccaggac-ttctcctatataatcacaataccattaatccaccccaaaaatttaacatcaatacactaatgat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25840089 886 +  99763055 aaTTACTTAACTTTAGGATgctccaataatcaaaattgat-agtggcttgtgaacagatagattacctgaatagaatagagcccagaaataaacccaaatgcttctggGGGAGTTTAGTGCATTATAAACATGACATTTTAAATCAATGAGGAAAAGAAATCATTTGCAGCTCA-CCCCACCATACACAGCAGGAATAGGAAGTCATTGGCAGAATAAAAAGATGGTAAGAACAGAACAGAATTGTAGAACAGTACATTTCTTGCTTCCCCACTTTTCAAAGTATTTT-----TTGCTTTTTCACAAATGTAAGTGTAATTTTATTTTCTAAATGTATACTAATTCTTTTCTTCTCTTTCTTAGATGAATGACAAAAATTACATCTTTAGAAAAAGAGTTGTTAG-AAAAAAGCCTTGGCTGCATTTGGGGGAAGTGACAGCACAGAAGAGACCAGAGAAGAGCCTCCTGGAGGAGAGCCTGCACTTTGACCATGCTGTCCGGATGGGTGCGGTGCTCTTTTCTGCAAAGTGTTCACTTCTCTGCATTTTCTATGGTCCCATTTCATAGAAAGATTTGGGGTGATGTttc-tttccctcaac-ttttattttgaaaacttgcaaacacagaaaagttgataaaatcatacagtgaacatctgtatgctattcaactggattcactagttaatgttttgtcacacttgttttctgtcttctgcgtatggaagattgtatatgtgccctttttccccctgaatcatttcaaagtaagttggcagtatcagag-----cactgttaagtacttttgcagatatcttctaggaaccaggac-ttctcctatataatcacaataccattaatccaccccaaaaatttaacatcaatacactaatgat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         2221 887 +    551209 ATTAACTTaactttacgatgctctaataatcaaaattgat-agtggcttgtgaacagatagatcacttga--agaatagagcccagaaataaacccaaatgcttctggGGGAGTTTAGTATATTATAAACATGACATTTTAAATCAATGAGGAAAAGAAATCATTTGCAGCTCG-CCCTACCATACGCAGCAGGAATAGGAAGTCATTGGCAGAATAAAAAGATGGTAAGAACAGAACAGAATTATAGAACAGTACGTTTCTTGCTTCCCCACTTTTCAAAGTATTTT-----TTGCTTTTACACAAGTATAAGTGTAATTTTATTTTCTAAATGTATACTACT--TTTTTGTCTCTTTCTTAGATGAATGA-AAAAATTACACCTTTAGAAAAAGAGTTGTTAG--AAAAAGCCTTGGCTGCATGTAGGGGAAGTGACAGCACAGAAGAGACCAGAGAAGAGCCTCCTGGAGGAGAGCCTGCACTTTGACCATGCTGTCCGGATGGGTGCGGTGCTCTTTTCTGCAGAGTGTTCACTTCTCTGCTTTTTCTATGGTTCCATTTCATAGAAAGATTTGGGGTGATGTttc-tttccctcaactttttattttgaaaacttgcaaacacagaaaagttgataaaataatacagtgaacatcggtatgcttttcaactggattcaccaattaaggttttgtcatacttgttttctctcctccgcatatggaagattgtatatgtgccctttttccccctgaatcatttcaaagtaagttaccagtatcatggcatttcactgttaagtactttcgcagatatcttctaggaaccaggacattctcctatataatcacaataccattaatcccaccccaaaatttaacatcaatacactaatgat
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170128601 887 - 171882078 -aTTACTTAACTTTAGGATgctctaataatcaaaattgat-agtggcttgtgaacagatagatcacttgaatagaatagagctcagatataaacccaaatgcttCTGAGGGAGTTAAGTATATTATAAACATGACATTTCAAATCAATGAGGAAAAGAAATCATTTGCAGCTCACCCCCCCCATAGGCAGCAGAAATAGGAAGTCATTGGCAGAATAAAAAGACAGT-----AAGAACAGAATTGTGGAACAGTATATTTCTTGCTTCCCCACTTTTCAAAGTATTTT-----TTGCTTTTACACAAGTATAAGTGTAATATTATTTTCTAAGTGTATACTCATTCTTTT-GTCTCTTTCTTAGATGAATGAAAAAAATTATACCTTTAGAAAAAGAGTTGTTAG-AATAAAGCCTCGGCAGCGTCAGGGGGCAGTGACAGCACAGAAGAGGCCAGAGAACAGCCTCCTGGAGGAGACCCTGCGCCGTGACCATGCTGTCCGGATGGGTACGGTGCGCTCTTCTACAGAGTGTTCAATTCTGTGCTTTTTCTATAGTTCCCTTTCATAGAAACATTTGGGGTGATGTttcttttccctcaactttttattttaaaaacttgcaaacatagagaagttgataaaatcatacagtgaacatctgtacgctattcaactggattcactagttaacattttgtcatatttg-cttctctcttccgcgtatgaaagattgtatatgtgcccttttaacccctgaatcatttcaaagtaagttgccagtatcagagcatttcactgttaggtacttttgtagatatcttctaagaaccaggacattctcctatataatcacaataccattaatctacccccaaaatttaacatcaatatactaatgat
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1546529 885 +   1584492 GATTACTTAACTTTAGGATGCTCTAATAACGAAGATTGATAAGTGGCTTGTGAAcagatagatcacttgaatagaatagcgcccagaaataaacccaaatgcttCTGGGGGAGTTTAGTATATTATAAGCATGACATTTTAAATCAATGAGGTAAAGAAATCATTTGCAACTCA-CCCCACCATAGGCAGCAGGAATAGGAAGTCATTGGCCAAATAAAAAGACGGG-----AAGAACAGAATTGTAGAACAGTACATTTCTTGCTTCCTGACTTTTC--AGTGTTTT-----TCGCTTTTACACAAGTATAAGTGTAATTTTATTTTCTAAATGTATACTAATCCTTTT-GTCTCTCTCTTAGATGAATGAAAAAAATTACACCTTTAGAAAAAGACTTGCTAGAAAAAAAGCCTCGGCAGCGTCAAGGGA-AGTGACAGCACAGAAGAGACCAGAGAATAGCCTCCTGGAGGGGACCCTGCGCTGTGACCATGCTGTCCGGATGGGTACGGTGCGCTCGTCTGCAGAATGTTCAATTCTGTGCTTTTCCTGTGGTTCCCTTTCATAGGAAGACTTGGGGTGATGTTTCTTTTCTATCAACtttttatttcaaaaacgtgcaaac--agaaaagttgataaaataatacagtgaacatctgtatgctattcaactggactcgcaaatcaatgtttcgtcatatttgttttctctcttccacgtatggaagattgtatatgtgcccttttcccccctgaatcatttcaaagtaagttgccagtatcagagcatttcactgttaagtacttttgcagatatcttctaagaaccaggacattctcttacataatcacaatatcattaatccacccaaaaaatttaacatcaatacactaatgat
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1       110123 890 +    138091 GATTACTTAACTTTAGGATgctctaataatcaagattgataagtggcttgtgaacagatagatcacttgaatagaatagcgcccagaaataaacccaaatgcttctggGGGAGTTTAGTATATTATAAGCATGACATTTTAAATCAATGAGGTAAAGAAATCATTTGCAACTCA-CCCCACCATAGGCAGCAGGAATAGGAAGTCATTGGCCAAATCAAAAGACGGGTAGAACAGAACAGAATTGTAGAACAGTACATTTCTTGCTTCCCGACTTTTC--AGTGTTTT-----TCGCTTTTACACAAGTATAAGTGTAATTTTATTTTCTAAATGTATACTAATCCTTTT-GTCTCTCTCTTAGATGAATGAAAAAAATTACACCTTTAGAAAAAGAGTTGCTAGAAAAAAAGCCTCGGCAGCGTCAAGGGA-AGTGACAGCACAGAAGAGACCAGAGAATAGCCTCCTGGAGGGGACCCTGTGCTGTGACCATGCTGTCCGGATGGGTACGGTGCGCTCGTCTGCAGAATGTTCAATTCTGTGCTTTTCCTGTGGTTCCCTTTCATAGGAAGACTTGGGGTGATGTTTCTTTTCCATCAACtttttattttaaaaacatgcaaac--agaaaagttgataaaataatacagtgaacatctgtatgctattcaactggactcgcaaatcaacgtttcgtcatatttgttttctctcttccacgtatggaagattgtatatgtgccctttttccccctgaatcatttcaaagtaagttgccagtatcagagcatttcactgttaagtacttttgcagatatcttctaagaaccaggacattctcttacataatcacaatatcattaatccacccaaaaaatttaacatcaatacactaatgat
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1379598 880 +   5228064 ------TTAACTTTAGGATGCT---gtaatcaaaattaat-agtggcttgtgaacagatagatcacttgaatagaatagagcccagaaataaacccaaatgcttCTGAGGGAGTTTAGTATATTGTAAACATGACATTTTAAATCAACGAGGAAAAGAAATCATTTGCAACTCA-CCCTACCATAGGTAGCAGGAATAGGAAGTCATTGGCAGAATAAAAAGATGGTAAGAACAGAACAGAGTTGTAGAACAGTACGTTTCTTGCTTCCCCACTTTTCAAAGTATTTT---------TTTTACACAAGTATAAGTGTAATTTTATTTTCTAAATGTATACTAATTATTTT-GTCTCTTTCTTAGATGAATGACAAAAATTACATCTTTAGAAAAAGAGTTATTAG-AAAAAAGCCTTGGCAGCATCGGGGGGAAGTGACAGCACAGAAGAGACCAGAGAATAGCCTCTTGGAGGAGACCCTGCATTCTGACCCTGCTGTCCGGATGGGTATGCTGCCCTCTTCTGCAAAGTGTTCACTTCTGTGCTTTTTCTATGGTTCCATTTCATGTATAGATTTGGGGTGGTGTTTCTTTTTCCTCAACtttttattttaaaagcttacaaacacagaaaagttgataaaatcatacagtaaacatctgtatgctattcacctggattcactagttaactttttgtcatatttgttttctctcttccacgtatggaagattgtatatttgccctttttccccctgaatcatttcaaagtaagttgccagtatgatagcatttcactgttaagtacttttgcagatatcttctaagaaccaggacattctcctatataatcacaataccgttaatccacccccaaaaattaacatcaatatactaatgat
i colAng1.NW_012115722v1    C 0 C 0
s aotNan1.NW_018512720v1      2586377 883 +   3863790 Aattacttaactttaagacgctctaataatcaaaacccat-agtagcttttgaataaatagatcacttgaatagaatagagcccagaaataaacccaaatgcttctgggttagtttagtatattataaacgtgacattttcaatcaatgaggaaaaaaaatcatttACAGTTCA-CCCCACCATAGGCAGCAGGAATAGGAAGTCATTGGCAGCAGAAAAAGATGGTATGAACAGAACAGAATTGTAGAACACTACATTTCTTGCTTCTGCACTTTTTAAAGTTTTTTTTTTTTTGCTTTT-------CACAAGTGTAATTTTCTTTTCTAAATGCATACTGATTATTTT-TTCTGTTTCTTAGATGAATGA-AAAAATTGCATTTTTAGAAAAAGAGTTGTTAG-AAGAAAGCCTCGGCAGCTTCGAGGGA-AGTGACAGCACAGAAGAGGCCAGAGAACAGCCTCCAGGAGGAGACCCTGCCCTTTGACCTTGCTGTCCGGATGGGTACGGTGCCAGCCTCTGCAAACTGTTCACTTCTGTGCTTTTTCTGTGGTTCCATTTCATAGGAAGATTTGGGGTGATGTTTCTTTTCTCTCAACtttttattttaaagacttgcaaac-----aaagttgaaaaagtaatacagtgaacatctgtatgccattcacctggactcaccaactaacattttgtcagatttgttttctctccccgttgtatgtaagattgtgtatgtgcccttttgccccc-gaatcatttcaaagtaagttgccagtatcatagcatttcacttcgaagtacttttgcagatatcttctaagaactaggacattgtcctatataatcacaataccattaatccacctccaaaatttaacatcaatacgctaatggt
i aotNan1.NW_018512720v1    N 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e chlSab2.chr5               36241980 2117 -  75399963 I

a score=2131460.000000
s hg38.chr15_KI270851v1_alt     98755 581 +    263054 acctactgtatagattataatcaGCTTCCTTGCAGCAATCTGTTTAGAAGGCTTGCATCCTGTCACTGTCCACTGATTAAATTTTGAACTC-TAACTTGAAACCCTGGTCATCTCATTGCCTTCTTTCTTATACCCATTAAGTCAAAAGGAGCTCTCATTTTATTTCAACAGAAAAGAGAATGGAAAAGCGGGGAAGAGTCCCTA-GTACCTTGGATAAAGTATGAGCACTTACTACCATATGTATTCTAGTTCTgtagttttcaaacttcagggagcatctcaaggcttattaaagcacagatagctgtc---cttccccactttctgattcaggaggtgtggggctggcccaggaatttgcatgtctaacaagttcccacgtgtttctgatgctgagggtctaaggactacaATGCATGAATCCGTGGTTTAGTGGATATCCACCTAATGAATACATGTTGTATTTCCTTTGGCACCCGTGATTACAGAGGAAACACCTTTCAACTGGAAGGTATCATTAAACAGAGGATAAGAGATCAGGTCAGTAAGAATTAAATTTCACTTAATTGAAATGTCACTCAAAT
s panTro5.chr15               9355810 581 +  83230942 acctactgtatagattataatcaGCTTCCTTGCAGCAATCTGTTTAGAAGGCTTGCATCCTGTCACTGTCCACTGATTAAATTTTGAACAC-TAACTTGAAACCCTGGTCATCTCATTGCCTTCTTTCTTATACCCATTAAGTCAAAAGGAGCTCTCATTTTATTTCAACAGAAAAGAGAATGGAAAAGAGGGGAAGAGTCCCTA-GTACCTTGGATAAAGTATGAGCACTTACTACCATATGTATTCTAGTTCTgtagttttcaaacttcagggagcatctcaaggcttattaaagcacagatagctgtc---cttccccactttctgattcaggaggtgtggggctggcccaggaatttgcatgtctaacaagttcccacgtgtttctgatgctgagggtctaaggactacaATGCATGAATCCGTGGTTTAGTGGATATCCACCTAATGAATACATGTTGTATTTCCTTTAGCACCCGTGATTACAGAGGAAACACCTTTCAACTGGAAGGTATCATTAAACAGAGGATAAGAGATCAGGTCAGTAAGAATTAAATTTCACTTAATTGAAATGTCACTCAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25840975 581 +  99763055 acctactgtatagattataatcaGCTTCCTTGCAGCAATCTGTTTAGAAGGCTTGCATCCTGTCACTGTCCACTGATTAAATTTTGAACAC-TAACTTGAAACCCTGGTCATCTCATTGCCTTCTTTCTTATACCCATTAAGTCAAAAGGAGCTCTCATTTTATTTCAACAGAAAAGAGAATGGAAAAGAGGGGAAGAGTCCCTA-GTACCTTGGATAAAGTATGAGAACTTACTACCATATGTATTCTAGTTCTgtagttttcaaacttcagggagcatctcaaggcttattaaagcacagatagctgtc---cttccccactttctgattcaggaggtgtggggctggcccaggaatttgcatgtctaacaagttcccacgtgtttctgatgctgagggtctaaggactacaATGCATGAATCCGTGGTTTAGTGGATATCCACCTAATGAATACATGTTGTATTTCCTTTAGCACCCGTGATTACAGAGGAAACACCTTTCAACTGGAAGGTATCATTAAACAGAGGATAAGAGATCAGGTCAGTAAGAATTAAATTTCACTTAATTGAAATGTCACTCAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         3108 584 +    551209 acctactgtatagattataatcaGCTTCCTTGCAGCAATCTGTTTAGAAGGCTTGCATCCTGTCACTGTCCACTGATTAAATTTTGAACTC-TAACTTGAAACCCTGGTTATCTCATTGCCTTCTTTCTTATACCCATTAAGTCAAAAGGAGCTCTCATTTTATTTCAATGGAAAACAGAATGGAAAAGAGGGGAAGAGTCCCTAGGTACCTTGGATAAAGTATGAACACTTACTACCATATGTATTCTAGTTCTgtagtttt-aaacttcagggagcatttcaaggcttattaaagcacagatagttgtccttcttccccactttctgattcaggaggtgtggggctggcccaggaatttgcatgtctaacaagttcccacgtgttgctgatgctgagggtctaaggactgcaGTGCGTGAATCCGTGGTTGAGTGGACATCCACCTAATGAATACATGTTGTATTTCCTTTAGCACCTGTGATTACAGAGGAAACACCTTTCAACTGGAAGGTATCATTAAACAGAGGATAAGAGATCAGCTCAGTAAGAATTAAATTTCACTTAATTGAAATGTCACTCAAAT
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170129488 583 - 171882078 acctactgtatagattattATCAGCTTTCTTGCAGTAATCTGTTTAGAAGACTTGCATCCTGTCACCGTCCACTGATTAAATTTTGAACTC-TCACTTGAAACCCTGGTCATCTCACTGCCTTCTTTCTTATACCCATTAAGTCAAAATGAGCTCTCATTTTATTTCAGTGGAAAAGAGAACGGAAAAGAGGGGAAGAGTCCCTAGGTACCTGGGAGAAAGTGTGAGCACTTACTACCACACGTATTCTAGTTCTgtggttttcaaactccagggagcatctcaaggcttattaaagcaccgatagctgtccctcttgcccactttctgattcgggaggtgtggggctggcccaggaatctgcatgtctaacaagttcccacgtgttgctgatgctgaggttctgagaactacaatgcaagaattagtgGTTTAGTGGACGTCTACCTAATGAATACATGTTTTATTTCCTTTAGCACCTGTGATTACAGAGGAAACACTTTTCACCTGGAAGATATCATTAAAC--AAGATAAGAGTTCAGGTCAGTAAGAATTAAATTTAACTTAATTGAAATATCACTGAAAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1547414 585 +   1584492 acctgctgtatagattatagtcagctttcTTGCAGTAATCTGTTCAGAAGGCTTGCATCCTGTCACCGTTCACTGATTAAATTTTGAACTC-TAACTGGAAACCCTGGTCATCTCACTGCCTTCTTTCTTATACTCATTAAGTAAAACTGAGCTCTCATTTTCTTTCAATGGAAAAGAGAACAGAAAAGAGGGGAAGAGTCCCTAGGTACCTGGGAGAAAGTATGAGCACTTACTACCCTACGTATTCTAGTTCTgtggttttcaaactccagggagcatctcaaggtttattaaagcacagatagctgtccctcttcctcactttctgattcagaaagtgtggggctggcccaggaatctgcatgtctaacaagttcccacgtgttgctgatgctgagggtctaaggactacaatgcgaggatcagtgGTTTAGTGGATATCTACCTAATGAATACATGTTGTATTTCCTTTAGCACCTGTGACTACAAAGGAAACACCTTTCAACTGGAAGATATCATTAAACAGAGAATAAGAGATCAGGTCAGTAAGAATTAAATTTAACTTAATTGAAATGTCACTGAAAT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36244097 586 -  75399963 acctAATGTATAGATTATGATCAGCTTTCTTGCAGTAATCTGTTTAGAAGGCTTGCATCCTGTCACTGTCCACTGATTAAATTTTGAACTCTTAACTTGAAACCCTGGTCATCTCATTGCCTTCTTTCTTATACCCATTAAGTCAAAATGAGCTCTCATTTTATTTCAATGGAAAAGAGAATGGAAAAGAGGGGAAGGGTCCCTAGGTATCTTGGGTAGAGTATGAGCACTTACTACCATATATATTCTAGTTCTgtagttttcaaacttcagggagcatctcaaggcttattaaagcacagatagctgtccctcttccccactttctgattcaggaggtgtggggctggcccaggaatatgcatgtctaacaagttcccccatgttgccgatgctgagtgtctaaggacgacaatgcgagaatcagtgGTTTGGTGGATATCTACCTAATGAATACATGTTGCATCTCCTTTAGTGCCTGTGATTACAGAGGAAACACCTTTCAACTGGAAGCTATCATTAAACAGAGGATAAGGGATCAGGTCAGTAAGAATTAAATTTAACTTAATTGAAATGTCACTGAAAT
i chlSab2.chr5              I 2117 C 0
s manLeu1.NW_012101289v1       111013 585 +    138091 acctgctgtatagattatagtcagctttcTTGCAGTAATCTGTTCAGAAGGCTTGCATCCTGTCACCGTCCACTGATTAAATTTTGAACTC-TAACTGGAAACCCTGGTCATCTCACTGCCTTCTTTCTTATACTCATTAAGTAAAACTGAGCTCTCATTTTCTTTCAATGGAAAAGAGAACGGAAAAGAGGGGAAGAGTCCCTAGGTACCTGGGAGAAAGTATGAGCACTTACTACCACACGTATTCTAGTTCTgtggttttcaaactccagggagcatctcaaggcttattaaagcacagatagctgtccctcttccccactttctgattcaggaggtgtggggctggcccaggaatctgcatgtctaacaagttcccacgtgttgctgatgctgagggtctaaggactacaatgcgaggatcagtgGTTTAGTGGATATCTACCTAATGAATACATGTTGTATTTCCTTTAGCACCTGTGATTACAAAGGAAACACCTTTCAACTGGAAGATATCATTAAACAGAGAATAAGAGATCAGGTCAGTAAGAATTAAATTTAACTTAATTGAAATGTCACTGAAAT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1380478 586 +   5228064 acctaatgtatagattataatcagctttcTTGCAGTAATCTATTTAGAAGGCTTGCATCCTGTCACTATCCACTGATTAAATTTTGAAACCTTAACTTGAAAACCTGGTCATCTCATTGCCTTCTTTCTTATACCCATTAAGTCAAAATGAGCTCTCATTTTATTTCAATGGAAAAGAGAATGGAAAAGAGGGGAAGGGTCCCTAGGTATCTTGGGTAAAGTATGAGCACTTACTACCGTATGTATTCTAGTTCTgtagttttcaaacttcagggagcatctcaaggcttattaaagcacagatagctgtccctcttccccactttgtgattcaggaggtgtggggctggcccaggaatttgcatgtctaacaagttccctcatgtggctgatgctgagggtctaaggacgacaatgcgagaatcagtgGTTTAGTGGATATCTACCTAATGAATACATGTTGCATCTCCTTTAGTGCCTGTAATTACAGAGGAAACGCCTTTCAACTGGAAGCTATCATTAAACAGAGGATAAGGGATCAGGTCAGTAAGaattaaatttaatttaattgaaatgtcactgaaat
i colAng1.NW_012115722v1    C 0 C 0
s aotNan1.NW_018512720v1      2587260 561 +   3863790 acctaatGTTTAGTTTATCATCAACTCTCTTGTAGCAATCTGTT-----------------------GTCCACTGATTAAATTTTGAACTC-CAACTTGAAACCCTGGTCATCTCATTGCCTTCTTTCTTGTACCCATTAAATCAAAATGAGCTCTCATTCTATTTCAGCAGAAGAGAGAATGGAAAAGAGGGGAAGAGTCCCTAGGTATCTTGGATAAAGTATTAGCACTTATTACAAAATGTATTCTAGTTCTgtggttttcaaaattcagcgagcatctcaaggcttcttaaagcacagatagctgtccctcttccccactttctgattcaggagatgtggggcttgcccagaaatttg-atttctaacaagttcccacgtgttgctgatgctgagggtctaaggactacagtgtgagactcagtgGTTTCGTGGCTATCTGCCTAATGAATACATGTGGTATTTCCTTTAGCACCTGTGATTACAGAGGAAACACCCTTCATCTGGAAGACATCATTAAACAGAGGGTAAGAGATCAGGTCAGTAAGAATTAAATTTAACTTAATTGAAATGTCACTGAAAT
i aotNan1.NW_018512720v1    C 0 I 15668
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=-734.000000
s hg38.chr15_KI270851v1_alt     99336 1 +    263054 G
s panTro5.chr15               9356391 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25841556 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         3692 1 +    551209 G
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170130071 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1547999 1 +   1584492 T
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36244683 1 -  75399963 T
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       111598 1 +    138091 T
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1381064 1 +   5228064 t
i colAng1.NW_012115722v1    C 0 C 0
e aotNan1.NW_018512720v1      2587821 15668 +   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=142417.000000
s hg38.chr15_KI270851v1_alt     99337 41 +    263054 TTTAGAAATAATATGACAggccaggcacagtggctcatgcc
s panTro5.chr15               9356392 41 +  83230942 TTTAGAAATAATATGACAggccaggcacagtggctcacgcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25841557 41 +  99763055 TTTAGAAATAATATGACAggccaggcacagtggctcacgcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         3693 41 +    551209 TTTAGAAATAATATGATAggccaggcacagtggctcatgcc
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170130072 41 - 171882078 TTTAGAAATAATATGACAggccaggcacagtggctcatgcc
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1548000 41 +   1584492 TTTAGAAATAACATGACACgccaggcacagtggcttatgcc
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36244684 41 -  75399963 TTTAGAAATAATATGACAggccaggcacagtgacttatgcc
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       111599 41 +    138091 TTTAGAAATAACATGACAggccaggcacagtggcttatgcc
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1381065 41 +   5228064 TTTAGAAATAATATGACTggccaggcacagtggctcatgcc
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        31424 38 -     60449 TTAAAAAAAAATAGG---ggacaggcctagtggctcacacc
i calJac3.chrUn_GL286477    N 0 C 0
e aotNan1.NW_018512720v1      2587821 15668 +   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=1115477.000000
s hg38.chr15_KI270851v1_alt     99378 286 +    263054 tgtaatcccagcactttgggaggccaaggcagacggatcacttgaggtcaggagttcgagaccagcctgtccaagatggtaaaacttcctctctactaaaaatac-aaaaa-ttagctgggcatggtggtgcatgcctatagtcccaggtactcgggaggctgaggcaggggaatcgcttgatctcgggatatggaggttgc-agtgagctgagat-gcgccaccgcactccagcc-tgggcaac-agagtgagactccatctcaacataaataaataaataaataaataaa
s panTro5.chr15               9356433 286 +  83230942 tgtaatcccagcactttgggaggccaaggcagacggatcacttgaggtcaggagttcgagaccagcctgtccaagatggtaaaacttcctctctactaaaaatac-aaaaa-ttagctgggcatggtggtgcatgcctatagtcccaggtactcgggaggctgaggcaggggaatcgcttgatctcgggatatggaggttgc-agtgagctgagat-gcgccactgcactctaggc-tgggaaac-agagcaagactccatctcaacataaataaataaataaataaataaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25841598 286 +  99763055 tgtaatcccagcactttgggaggccaaggcagacggatcacttgaggtcaggagttcgagaccagcctgtccaagatggtaaaacttcctctctactaaaaatac-aaaaa-ttagctgggcatggtggtgcatgcctatagtcccaggtactcgggaggctgaggcaggggaatcgcttgatctcgggatatggaggttgc-agtgagctgagat-gcgccactgcactctaggc-tgggaaac-agagcaagactccatctcaacataaataaataaataaataaataaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         3734 273 +    551209 tgtaatcccagcactttgggaggccaaggcggatggatcacttgaggtcaggagttcgagaccagcctgtccaagatggtaaaacttcctctctactaaaaatac-aaaaa-ttagctgggcatggtggtgcatgcctatagtcccaggtactcgggaggctgaggcaggggaatcgcttgatctcgggatatggaggttgc-agtgagctgagat-gcgctactgcactccagcc-tgggaaac-agagcaagactccatctcaaaataaataaataa-------------
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164144339 273 - 169600520 tgtaatcccagcactttggaaggcagaggcaggtggatcacctgaggtcaggaggtcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaa-ttagccgggcgtggtggtgggtgcctgtaatcccagctacccaggaggctgaagcaggagaatcgcttgaacccaggaggtggaggttgc-aatgagccaagatcacaccacctcactccaccc-taggcaac-agagcaagactctgtc-------------gtaaataaataaata--
i rheMac8.chr7              N 0 C 0
s macFas5.chr7              170130113 286 - 171882078 tgtaatcccagtactttgggaggacaaggcagaaggatcccttgaggtcaggagtttgagaccagcctgtccaagatggtaaaactccacctctactaaaaatac-aaaaa-ttagctgggcatggtggtgcatgcctgtagtcccagctactcaggaggctgagctaggggaatcgcttgaactcgggagatggaggttgc-agtgagctgagat-gcaccactgcactccagcc-tgggcaac-agagaaagactccgtctctaaataaaTATGtaaataaataaataaa
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1548041 284 +   1584492 tgtaatcccagcactttgggaggccaaggcggatggatcacttgagatcagaagttcgagattaggctgtccaagatggtaaaacccgctctctactaaaaatgc-aaaaa-ttagctgggcatggtggtgcatgcctgtagtcccggctactcgggaggctgaggcaggggaatcacttgaacttgggagatggaggttgc-agtgagctgagat-gcgccactgcactccagcc-tgggcaac-agagtgagactccatctcaacataaataaataaataaataaaaa--
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36244725 284 -  75399963 tgtaatcccagcactttgggaggccaaggcagatggatcacttgaggtcaggagtttgagaccagtctgtccaagatggtgaaattccctctctactaaaaatac-aaaaa-ttggctgagcatggtggtgcatgcctgtagtcccagctactcgggaggctgaggcaggggaagcgcttgaacttgggagatggaggttgc-agtgagctgagat-gtgctactgtactccagcc-tgggcagc-agggtgagactccatctcaaaatcaatcaatcaatcaatcaata--
i chlSab2.chr5              C 0 I 7
s manLeu1.NW_012101289v1       111640 278 +    138091 tgtaatcccagcactttgggaggccaaggcggatggatcacttgagattagaagttcgagattaggctgtccaagatggtaaaacccgctctctactaaaaatgc-aaaaa-ttagctgggcatggtggtgcatgcctgtagtcccggctactcgggaggctgaggcaggggaatcacttgaacttgggagatggaggttgc-agtgagctgagat-gcgccactgcactccagcc-tgggcaac-agagtgagactccatctcaacataaataaataaataaa--------
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1381106 284 +   5228064 tgtaatcccagcactttgggaggccaaggcagatggatcacttgaggtcaggagtttgagaccagtctgtccaagatggtgaaactccctttctactaaaaatac-aaaaa-ttagctgggcatggtggtgcatgcctgtagtcccagctactcaggaggctgaggcaggggaatcacttgaacttgggagatggaggttgc-agtgagctaagat-gcgccactgtactccagcc-tgggcaac-agggtgagactccatctcaaaaTCaatcaatcaatcaataaata--
i colAng1.NW_012115722v1    C 0 I 2
s calJac3.chrUn_GL286477        31462 275 -     60449 tacaatctcagcactttggtaggccaaggcaggtagattacctgaggtcaggagtttcagaccagcctggccaatgtggtgaaatcctgtctctactaaaaatac-aaaaacttagccaggtgtggtggtgggcgcctgtgatcccaggtactcaggaggctgaggaagaagaattgcctgaacccaggaggtggaggtcacaagtgagccaagatcgcaccactgcattccagccttgggtgacaagagcaaaa---------aaaaaaaaaaaaaaaaggaag-------
i calJac3.chrUn_GL286477    C 0 C 0
e aotNan1.NW_018512720v1      2587821 15668 +   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=-15786.000000
s hg38.chr15_KI270851v1_alt     99664 21 +    263054 taag-------------------ataaataagataaaaat
s panTro5.chr15               9356719 28 +  83230942 taaataa------------ataaataaataagataaaaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25841884 20 +  99763055 taa--------------------ataaataagataaaaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         4007 17 +    551209 -----------------------ataaataagataaaaAT
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164144612  3 - 169600520 -------------------------------------aat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170130399  4 - 171882078 ------------------------------------taat
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1548325  3 +   1584492 -------------------------------------TAC
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1       111918  3 +    138091 -------------------------------------aat
i manLeu1.NW_012101289v1    C 0 I 2
s colAng1.NW_012115722v1      1381392  3 +   5228064 -------------------------------------aat
i colAng1.NW_012115722v1    I 2 I 2
s calJac3.chrUn_GL286477        31737 40 -     60449 gaaggaagaagggagagagggaggtagggagggaAGTAAT
i calJac3.chrUn_GL286477    C 0 C 0
e aotNan1.NW_018512720v1      2587821 15668 +   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e chlSab2.chr5               36245009  7 -  75399963 I

a score=8800.000000
s hg38.chr15_KI270851v1_alt     99685 2 +    263054 aa
s panTro5.chr15               9356747 2 +  83230942 aa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25841904 2 +  99763055 aa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         4024 2 +    551209 AA
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164144615 2 - 169600520 aa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170130403 2 - 171882078 aa
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1548328 2 +   1584492 AA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36245016 2 -  75399963 AA
i chlSab2.chr5              I 7 C 0
s manLeu1.NW_012101289v1       111923 2 +    138091 aa
i manLeu1.NW_012101289v1    I 2 C 0
s colAng1.NW_012115722v1      1381397 1 +   5228064 -a
i colAng1.NW_012115722v1    I 2 C 0
s calJac3.chrUn_GL286477        31777 2 -     60449 AA
i calJac3.chrUn_GL286477    C 0 C 0
e aotNan1.NW_018512720v1      2587821 15668 +   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=109761.000000
s hg38.chr15_KI270851v1_alt     99687 22 +    263054 aaat---aaaGGGAAGATGGGGCAG
s panTro5.chr15               9356749 22 +  83230942 aaat---aaaGGGAAGATGGGGCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25841906 22 +  99763055 aaat---aaaGGGAAGATGGGGCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         4026 22 +    551209 AAAT---AAAGGGAAGATGGGGCAG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164144617 22 - 169600520 aaat---aaaTGGAAGATGGGGCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170130405 25 - 171882078 aaataaaaaaaGGAAGATGGGGCAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1548330 22 +   1584492 AAGT---AAAGGGAAGATGGGGCAG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36245018 22 -  75399963 AAAT---AAAGGGAAGATGTGGCAG
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       111925 22 +    138091 aaGT---AAAGGGAAGATGGGGCAG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1381398 22 +   5228064 aaat---aaaGGGAAGATGTGTCAG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        31779 22 -     60449 ATAT---AAAAGGAAGATGGAGCAC
i calJac3.chrUn_GL286477    C 0 I 83
s aotNan1.NW_018512720v1      2603489 22 +   3863790 aaat---aaaaggaagATGGGGCAC
i aotNan1.NW_018512720v1    I 15668 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=1195637.000000
s hg38.chr15_KI270851v1_alt     99709 212 +    263054 CTTTGTGTATTGCATGTCCTGAAAATGGGCTGATTTCTCTCAAGAGGCAGGGATTTAAGCTCTGTAGCCTATGTGGGATACATACAGGAGAAAAAAG--AAGAAAAAGAAAAGAAATGTAAATATAAATAAATGAAAATAACACTTTTCCATGATTATAAAGGAAATCACATTGTTTTTGTAATAATTTGGATGACAAAATGTAAAGAAAAATC
s panTro5.chr15               9356771 212 +  83230942 CTTTGTGTACTGCATGTCCTGAAAATGGGCTGATTTCTCTCAAGAGGCAGGGATTTAAGCTCTGTAGCCTATGTGGGATACATACAGGAGAAAAAAG--AAGAAAAAGAAAAGAAACGTAAATATAAATAAATGAAAATAACACTTTTCCATGATTATAAAGGAAATCACATTGTTTTTGTAATAATTTGGATGACAAAATGTAAAGAAAAGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25841928 212 +  99763055 CTTTGTGTACTGCATGTCCTGAAAATGGGCTGATTTCTCTCAAGAGGCAGGGATTTAAGCTCTGTAGCCTATGTGGGATACATACAGGAGAAAAAAG--AAGAAAAAGAAAAGAAACGTAAATATAAATAAATGAAAATAACACTTTTCCATGATTATAAAGGAAATCACATTGTTTTTGTAATAATTTGGATGACAAAATGTAAAGAAAAATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         4048 212 +    551209 CTTTGTGTACTGCATGTCCTGAAAATGGGCTGATTTCTCTCAAGAGGCAGGGATTTAAGCTCTGTAGCCTATGTGGGATACATACAGGAGAAAAAAG--AAGAAAAAGAAAAGAAATGTAAATATAAATAAATGAAAATAACACTTTTCCATGATTATAAAGGAAATCACATTGTTTTTGTAATAATTTGGATGACAAAATGTAAAGAAAAATC
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164144639 214 - 169600520 CTTTTTGTACTGCACATCCCAAAAATGGGCTGACTGACCTCAAGAGGAAAGGATTCAAGGTCTCTAGCATACATGGGATACATACAGGAGaaaaaaggaaaaaaaaagaaaagaaatataaatataaataaatgaaaacaaCACTTCTCCCTGATTATAAAGGAAATTACATTCTTTGTGTAATAATTTGGATGACAAAATGTAGAGAAAAATC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170130430 212 - 171882078 CTTTGCGTACTGCACGCCCTGAAAATGGGCTGATTTCCCTCGAGAGGCAGGGATTTAAGCTCTCTAGCCTACATGGGATACATACAGAAGAAAAAAG--AAGAAAACAAAAAGAAATGTAAGTATAAATCAATGAAAATAACTCTTCTCCCTGATTATAAAGGAAATCACATTCTTTTTGTAATAATTTGGATGACAAAATATAAAGAAAAATA
i macFas5.chr7              C 0 N 0
s cerAty1.NW_012002601v1      1548352 212 +   1584492 CTTTGTGTACTGCACGCCTAGAAAATGGGCTGATTTCCCTCAAGAGGCAGGGATTTAAGCTCTCTAGCCTACATGGGATATATACAGGAGAAAAAAG--AAGAAAACAAAAAGAAATGTAAATATAAATAAATGAAAATAACACTTCTCCCTGATTATAAAGGAAATCACATTCTTTTTGTAATAATTTGGATGACAAAATATAAAGAAAAATC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36245040 211 -  75399963 CTTTGTGTACTGCACGTCCTGAAAATGGGCTGATTTCCCTCAAGGGGCAGGGATTTCAGCTCTCTAGCCTACATGGGATACATACAGGAGAAAaaag---agaaaaagaaaagaaatgtaaatataaataAATGAAAATAACACTTCTCCCTGATTACAAAGGAAATCACATTCTTTTTGTAANAATTTGGATGACAAAATATAAAGAAAAATC
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       111947 212 +    138091 CTTTGTGTACTGCACGCCCAGAAAATGGGCTGATTTCCCTCAAGAGGCAGGGATTTAAGCTCTCTAGCCTACATGGGATATATACAGGAGAAAAAAG--AAGAAAACAAAAAGAAATGTAAATATAAATAAATGAAAATAACACTTCTCCCTGATTATAAAGGAAATCACATTCTTTTTGTAATAATTTGGATGACAAAATATAAAGAAAAATC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1381420 211 +   5228064 CTTTGTGTACTGCACATCCTGAAAATGGGCTGATTTCTCTCAAGAGGCAGGGATTTAAGCTCTCTAGCCTACATGGGATACATACAGGAGAAAAAAG---AGAAAAAGAAAAGAAATGTAAATATAAATAAATGAAAATAACACTTCTCCCTGATTACAAAGGAAATTACATTCTTTTTGTAACAATTTGGATGACAAAATATAAAGAAAAATC
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        31884 184 -     60449 TTTTGTGTACTGCATGTCCCAAAAATGGGCTGACTGATCTTGTGAAGAAGGGATTCAAGCTGTCTAGCTTACCTGGGATGCATACAGGAGAAAAAAA--AAAAA---------------------AAGTGACATAAA-------TTCTCCCTGGTTATAAAGGAAATCATCTTCCTTTTGTAATATTTTGGATAACAAAATATAAGGAGAAATC
i calJac3.chrUn_GL286477    I 83 C 0
s cebCap1.NW_016107859v1       792350 204 -   1271737 CTTTGTGTACTGCAGATCCTGAAAATGGGCTGACTGACCTTATGAAGCAGGGATTCAAGCTCTCTAGCTTACATGGGATACGTGCAGGGGAAaaaag--aaaaa--------gaaacataaatataaataaaataaaTGAACACTTCTCCCTGGTTATAAAGGAAATCACCTTCCTTTTGTAATATTTTGGATGACAAAATATAAAGAAAAATC
i cebCap1.NW_016107859v1    N 0 C 0
s aotNan1.NW_018512720v1      2603511 203 +   3863790 CTTTGTGTACTGCGTGTCCCAAAATTGGGCTGACTGACCTCGTGAAGCAGGGATTCAAGCTCTCTAGCCCACTTGGGATACATACGGGAGAAAAAAG--AAAAG---------AAACATAAATATAAATAAATGAAAGTAACACTTCTCCCTGGTTATAAGGGAAATCACTTTCTTTTTGTAATATTTTGGATGACAAAATATAAAGAAAAATC
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=343736.000000
s hg38.chr15_KI270851v1_alt     99921 63 +    263054 TTTAATTTTGCCACTCAAAACATTCCGGTTTGTTGCTTTTCACACTTTT-TATGC-TGTAAACAT
s panTro5.chr15               9356983 63 +  83230942 TTTAATTTTGCCACTCAAAACATTCCGGTTTGTTGCTTTTCACACTTTT-TATGC-TGTAAACAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25842140 63 +  99763055 TTTAATTTTGCCACTCAAAACATTCCGGTTTGTTGCTTTTCACACTTTT-TATGC-TGTAAACAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         4260 63 +    551209 TTTAATTTTGCCACTCAAAACATTCCGGTTTGTTGCTTTTCACACTTTT-TATGC-TGTAAACAT
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164144853 61 - 169600520 TTTAATTTTTCCACTCAAAACATTCTGGTTC----CTTTTTACACTTTTTTATGCATGTAAACAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170318762 58 - 171882078 TTTAATTTTGCCACTCAAAACATTCTGGTTTGTTGCTTTTTACACTTGT-------TATATACAT
i macFas5.chr7              N 0 C 0
s cerAty1.NW_012002601v1      1548564 64 +   1584492 TTTAATTTTGCCACTGAAAACCTTCTGGTTTGTTGCTTTTTATGCTTTT-TATGCATATAAACAT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36245251 64 -  75399963 TTTAATTTTGCCACTCAAGACATTCTGGTTTGTTGCTTTTTATACTTTT-TATGCATATAAACAT
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       112159 64 +    138091 TTTAATTTTGCCACTGAAAACCTTCTGGTTTGTTGCTTTTTATGCTTTT-TATGCATATAAACAT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1381631 64 +   5228064 TGTAATTTTGCCACTCAAAACATTCTGGTTTGTTGCTTTTTACACTTTT-TATGCATATAAACAT
i colAng1.NW_012115722v1    C 0 I 19
s calJac3.chrUn_GL286477        32068 65 -     60449 TTTAATTTAGTCACTCAAAACGTTCTGGTTTGTTGCTTTTTGTCCTTTTTTATGCATGTAAACAT
i calJac3.chrUn_GL286477    C 0 C 0
s cebCap1.NW_016107859v1       792554 63 -   1271737 --TAATTTTGTCACTCAAAACATTCGAGTTTTTTGCTTTTTACACTTTTCTATGCATATAAACAT
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2603714 65 +   3863790 TTTAATTTTGTCACTCAAAACATCCTGGTTTGTTGCTTTTTATACTTTTTTATGTATATAAACAT
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=45446.000000
s hg38.chr15_KI270851v1_alt     99984 9 +    263054 TTTAAAAAG
s panTro5.chr15               9357046 9 +  83230942 TTTAAAAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25842203 9 +  99763055 TTTAAAAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         4323 9 +    551209 TTTAAAAAG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164144914 9 - 169600520 TTTAAAAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170318820 9 - 171882078 TTTAAAAAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1548628 9 +   1584492 TTTTAAAAG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36245315 9 -  75399963 TTTAAAAAG
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       112223 9 +    138091 TTTTAAAAG
i manLeu1.NW_012101289v1    C 0 C 0
s calJac3.chrUn_GL286477        32133 9 -     60449 TTTTAAAAG
i calJac3.chrUn_GL286477    C 0 C 0
s cebCap1.NW_016107859v1       792617 9 -   1271737 TTTATAAAG
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2603779 9 +   3863790 TTTTAAAAG
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1381695 19 +   5228064 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=1271613.000000
s hg38.chr15_KI270851v1_alt     99993 224 +    263054 TAGAATCACAATACATGGTCTTTTGTCACTTACTATATTTTAAGCATGTTTCTATGGGAGAAATATATCCTGGCATCATCACTTTCAACAGCTGGATGTATGTTAAGTGAATCATTGCCACCCCAGAGGTGGATTTCCTTCTATATATATTTTAATGGACTCGAGTGAGGATTTTTGCACTGAATTCATAGAAGTAGAATTTCTAGAAGAAAATAATATAAAAC
s panTro5.chr15               9357055 224 +  83230942 TAGAATCACAATACCTGGTCTTTTGTCACTTACTATATTTTAAGCATGTTTCTATGGGAGAAATATATCCTGGCATCATCACTTTCAACAGCTGGATGTATGTTAAGTGAATCATTGCCACCCCAGAGGTGGATTTCCTTCTATATATATTTTAATGGACTCGAGTGAGGATTTTTGCACTGAATTCATAGAAGTAGAATTTCTAGAAGAAAATAATATAAAAc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25842212 224 +  99763055 TAGAATCACAATACATGGTCTTTTGTCACTTACTATATTTTAAGCATGTTTCTATGGGAGAAATATATCCTGGCATCATCACTTTCAACAGCTGGATGTATGTTAAGTGAATCATTGCCACCCCAGAGGTGGATTTCCTTCTATATATATTTTAATGGACTCGAGTGAGGATTTTTGCACTGAATTCATAGAAGTAGAATTTCTAGAAGAAAATAATATAAAAc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         4332 224 +    551209 TAGAATCACAATACATGGTCTTTTGTCACTTACTATATTTTAAGCATGTTTCTATGGCAGAAATATATCCTGGCATCATCACTTTCAATAGCTGGATGTATGTTAAGTGAATCATTGCCACCCCAGAGGTGGATTTCCTTCTACATATATTTTAATGGACTCGAGTGAGGATTTTTGCACTGAATTCATAGAAGTAGAATTTCTAGAAGAAAATAATATAAAAC
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164144923 223 - 169600520 TAGAATCATGATATATGGTCTTTTGTCACTGACTATATTTTAAGCATGTTTCTATGGGAGAATTATATCCTGGCATCATCATTTTTAATAGCTTAATGTATGTTAAGTGAATCATTGCCACCCCAGAGCTGAATTTCCTTCTATAT-CATTTTAATGAACCCGAGCAAGGATTTTTGCGCTGAATTCATAGAAGTAGAATATATGGAGGAAAATAATATAAAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170318829 223 - 171882078 TAGAATCATAATATATGGTCCTTTGTCACTCACTATATTTTAAGCATGTTTCTGTGGCAGAAATATATCCTGGCATCATCATTTTTAATATCTGGGTGTAAGTTAAGTGAATCATTGGCACCCCAGAGCtgaatttccttctatgtacattttaatggactcaagtaagtatttttgcactgaattcata-cagtagaatttctagaggaaaataatgtaaaac
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1548637 224 +   1584492 TAGAATCATAATATATGGTCTTTCGTCACTTACTATATTTTAAGCATGTTTCTATGGCAGAAATATATCTTGGCATCATCATTTTTAATAGCTGGATGTACGTTAAGTGAATCGTTGCCACCCCAGAGGTGAATTTCCTTCTATACACATTTTAATGGACTCGAGAAAGGATTTTTGCACTGAATTCATAGAAGTAGAATTTCTGGAGGAAAATAATATAAAAC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36245324 223 -  75399963 TAAAATCATAATATATGGTCTTTTGTCACTTACTATATTTTAAGCATGCTTCTATGGCAGAAATACATCCTGGCATCATCATTTTTAACAGCTGGATGCATGTTAAGTAAATTATTGCCACCCCAGAGGTGAATTTCTTTCTTTATATATTTTAATGGACTCGAGTAAGGATTTTT-TACtgaattcgtagaagtagaatttctagaggaaaataatataaaac
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       112232 224 +    138091 TAGAATCATAATATATGGTCTTTCGTCACTTACTATATTTTAAGCATGTTTCTATGGCAGAAATATATCTTGGCATCATCATTTTTAATAGCTGGATGTACGTTAAGTGAATCGTTGCCACCCCAGAGGTGAATTTCTTTCTATACACATTTTAATGGACTCGAGAAAGGATTTTTGCACtgaattcatagaagtagaatttctggaggaaaataatataaaac
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1381714 223 +   5228064 TAAAATCATAATATATGGTCTTTTGTCACTTACTATATTTTAAGCATGTTTCTATGGCAGAAATATATCCTGGCATCATCATTTTTAATAGCTGGATGCATGTTAAGTAAATCATTGCCACCCCAGAAGTGAATTTCCTTCTATATGTATTTTAATGGACTCAAGTAAGGA-TTTTGCACTGAAGTCATAGAAGTAGAATTTCTAGAGGAAAATAATGTAAAAC
i colAng1.NW_012115722v1    I 19 C 0
s calJac3.chrUn_GL286477        32142 220 -     60449 TGAAATCATAACATATAGTCTTTTGTCACTGACTATATTTTGAGCATATTTTTATTGCAGAAATATATCCTGACA---TAATTTTTAATAGTTGGATGTATATTTAATGAATCATTGCCACCTCAGAGGTGAATTTCTTTCTATATACA-TTTATTGGACTCAAGTAAATATTATTGGAATAAATTCATACCGGTAGAATTTCTGGTGGAAAATAGTATAAAAC
i calJac3.chrUn_GL286477    C 0 I 848
s cebCap1.NW_016107859v1       792626 220 -   1271737 ---AATCATAATATATAGTCTTTTGTCACTTTCTACATTTTGGGCATATTTTTATGGCAGAAATATATCCTGACATTGTGATTTTTAATAGTTGGATGTATATTTAGTGAATCATGGCCACCCCAGAGGTGAATTTCTTTCTATATACA-TTTATTGTACTCGAGCAAGTATTACTGGAATGAATTCAGAAAAGTAGAATTTCTGGAGGAAAATAATATAAAAC
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2603788 219 +   3863790 TAGAATCATAACATATAGTCTTTTGTCA----CTACATTTGGGGCATACTTTTATGGCAGAAATATATTCTGACATTATTATTTTTAATAGTTGGATGTATATTTAATGAATCATTGTCACCTCAGAGGTGAATTTCCTTCTATATACA-TTTATTGGACTTAAGAACATATTATTGGAATGAATTCATACaagtagaatttctggtgtgaaataatataaaac
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=1344032.000000
s hg38.chr15_KI270851v1_alt    100217 222 +    263054 AGTTTTAGGA-TTTTTAAAACAAATGTTCAAATCATCCTATAGGAAAATtggttgagtttacgctcccaccaacagggacagagctccaggttccgccttccatttgtcgtcttcgctggtctttaagcagaaaatctcattgttttcatcacctttctttgatttctagtgcttttgaatctttttcatttg-ctcattggccatttttattcttgtgggaag
s panTro5.chr15               9357279 222 +  83230942 agttttagga-tttttaaaagaaatgttcaaatcatcctataggaaaattggttgagtttatgctcccaccaacagggacagagctccaggttccccctgccatttgttgtcttctctggtctttaagcagaaaatctcattgttttcattacctttctttgatttctagtgcttttgaatctttttcatttg-ctcattggccatttttattcttgtgggaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25842436 222 +  99763055 agttttagga-tttttaaaagaaatgttcaaatcatcctataggaaaattggttgagtttatgctcccaccaacagggacagagctccaggttcccccttccatttgtcgtcttctctggtctttaagcagaaaatctcattgttttcattacctttctttgatttctagtgcttttgaatctttttcatttg-ctcattggccatttttattcttgtgggaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         4556 222 +    551209 AGTTTTAGGA-TTTTTAAAAGAAATGTTCAAATCATCCTATAGGAAAATTGGTTGAGTTTATGCTCCCACCAACAGGGACAGAGCTCCAGGTTCCCCCTTCCATTTGTCATCTTCGCTGGTCTTTAAGCAGAAAatctcattgttttcattacctttctttgatttctagtgcttttgcatctttttcatttg-ctcattggccatttttattcttgtgggaag
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164145146 222 - 169600520 AGTTTTAGGA-TTTTTAAAAGAAATGTTCAAATGATCTTGTAGGAAAATTTGTTGagtttatactcccaccaacagggacagagctccaggttcccccttccatttgtcatctttgctggtctttaagcagaacatctcattgttttcattacatttctttgatttctagtgcttttgaatctttttcctatg-ctcattgggcatttttattcctgtgggaag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170319052 222 - 171882078 agttttaaga-tttttaaaagaaatgttcaaattatcctgtaggaaaattggttcagtttatactcccatcaacagggatagagctccaggttcccccttccatttgtcatctttgctggtctttaggcagaaaatctcattgttttcattacatttctttgatttctagtgcttttgaatctttttcatatg-cttataggccatttttattactgtgggaag
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1548861 222 +   1584492 AGTTTTAGGA-TTTTTAAAAGAAATGTTCAAATTATCCTGTAGGAAAACTGGTTGAGTTTATACTCCCACCAACAGGGACGGAGCTCCAGATTTCCCCTTCCATTTGTCATCTTTGTTGGTCTTTAAACAGAACatctcactgttttcattacatttctttgatttctagtgcttttgaatctttttcatatg-ctcattggccatttttattcttgtgggaag
i cerAty1.NW_012002601v1    C 0 I 6
s chlSab2.chr5               36245547 221 -  75399963 agttttagga-tttttaaaagaaatgttcaaatgatcctgtaggagaattggttgagtttatgctcccatcaacagggacagagctccagg-ttccccttccatttgtcatctttgctggtctttcagcagaaaatctcattgttttcattacatttctttgatttctagtgcttttgaatctttttcatgtg-ctcatggaccatttttattcttgtgggaag
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       112456 221 +    138091 agttttagga-tttttaaaagaaatgttcaaattatcctgtaggaaaactgg-tgagtttatactcccaccaacagggatggagctccagatttccccTTCCATTTGTCATCTTTGTTGGTCTTTAAACAGAACatctcactgttttcattacatttctttgatttctagtgcttttgaatctttttcatatg-ctcattggccatttttattcttgtgggaaG
i manLeu1.NW_012101289v1    C 0 I 8
s colAng1.NW_012115722v1      1381937 221 +   5228064 AGTTTTAGGA-TTTTTAAAAGGAATGTTCAAATGATCCTGTAGGAAAATtggttgagtttatactcccaccaacagggacagagctccag-tttccccttccatttgtcatctttgctggtctttcagcagaaaatctcattgttttcattacatttctttgatttctagtgcttttgagtctttttcatatg-ctcattggccatttttattcttgtgggaag
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        33210 222 -     60449 AGTTTTAGGG-TTTTTAATAGAAATGTTGAAACGATCAGGTAGGAAAATTCATTCAGATTATCCTCCCACCAACAGGGACAGAGCTCCAGGTTCCCCCTTCCGTTTGTCGTCTTTGCTGATCTTTAAGCAGACACtctcattgttttcattacatttctttggtttctagtgcttttgaatctttctcatatg-ctcattggctatttgtactcttgtgggaag
i calJac3.chrUn_GL286477    I 848 C 0
s cebCap1.NW_016107859v1       792846 218 -   1271737 AGCTTTAGGGTTTTTTAATAGAAATGTTCAAATTATCCTGTAGGAAAATTGGTTCATTTTATCC-----CCAACACGGACAGAACTCCAGGTTCCCCTATCCA-TTGTCCTCTTTGCTCGTCTTTAAGCAGAAAatttcattgctttcattacatttctttgatttctagtggttttgaatctttttcatgtgactctttggccatttatattattgtgggaag
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2604007 222 +   3863790 acttttagag-tttttaatagaaatgttaaagtgatcctgtaggaaaattggttcagtttattcttccaccaacagggacagagctccaggttctcccttccatttgtcatctttgctggtctttaagcagaaactctcattgttttcattacatttctttggtttctagtacttctgaatctttctcatatg-ctcactggccatttatattcttgtgggaag
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=1669746.000000
s hg38.chr15_KI270851v1_alt    100439 426 +    263054 tgctggtttctccattgcccattttctgctgcaaatcattcatt-tttt----tttctgagtaattttaaagatttctttataggctaaggatacaaacctttaatctgtcattgagtttacaaagatcttctcccagtaagtaatttgtcatttca-------cttta----------------------ttt---------atttatt--ttttgctagcaaagcaccaaagtCAAATTTCACTTAATTTTTATCCTGCTGAATGAACACATTTTAAGTTAGTGATTTTAGTGGAAACAGGAGCAGGACAGA-----------------------------------ATGTAA-TAATTAgatctcgctctgtcaccccaactggagtgcagtggcatgatcatagctactgcagcctcaaacttctgggctcaagtga-ttttcccacctcagcctcccaagtagctctaggactacaggtgtgtgccgccaagcccagctaatt
s panTro5.chr15               9357501 426 +  83230942 tgctggtttctccattgcccattttctgctgcaaatcattcatt-tttt----tttctgagtaattttaaagatttctttataggctaaggatacaaacctttaatctgtcattgaggttacaaagatcttctcccagtaagtaatttgtcatttca-------cttta----------------------ttt---------atttatt--ttttgctagcaaagcaccaaagtCAAATTTCACTTAATTTTTATCCTGCTGAATGAACACATTTTAAGTTAGTGATTTTAGTGGAAACAGGAGCAGGACAGA-----------------------------------ATGTAA-TAATTAgatctcgctctgtcaccccaactggagtgcagtggcatgatcatagctactgcagccccaaacttctgggctcaagtga-ttttcccacctcagcctcccaagtagctctaggactacaggtgtgtgccgccaagcccagctaatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25842658 425 +  99763055 tgctggtttctccattgcccattttctgctgcaaatcattca-t-tttt----tttctgagtaattttaaagatttctttataggctaaggatacaaacctttaatctgtcattgaggttacaaagatcttctcccagtaagtaatttgtcatttca-------cttta----------------------ttt---------atttatt--ttttgctagcaaagcaccaaagtCAAATTTCACTTAATTTTTATCCTGCTGAATGAACACATTTTAAGTTAGTGATTTTAGTGGAAACAGGAGCAGGACAGA-----------------------------------ATGTAA-TAATTAgatctcgctctgtcaccccaactggagtgcagtggcatgatcatagctactgcagccccaaacttctgggctcaagtga-ttttcccacctcagcctcctaagtagctctaggactacaggtgtgtgccgccaagcccagctaatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         4778 420 +    551209 tgctggtttctccattgcccattttctgctggaaatcatt---t-tttt----tttctgagtaattttaaagatttctttataggctaaggatacaaacctttaatctgtcattgaggttacaaagatcttctcccagtaagtaatttgtcatttca-------cttta----------------------ttt---------at---tt--ttttgctagcaaagcaccaaagtCAAATTTCACTTAATTTTTATCCTGCTGAATGAACACATTTTAACTTAGTGATTTTAGTGGAAACAGGAGCAGGACAGA-----------------------------------ATGTAA-TAATTAgatctcactctgtcaccccaactggagtgcagtggcatgatcatagctactgcagcctcaaacttctgggctcaagtga-ttttcccacctcagcctcccaagtagctctaggactacaggtgtgtgccgccaagcccagctaatt
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164145368 445 - 169600520 tgtcggtttctccattgcccattttctactggaaatcattcatt-tttt------tctgagtaattttaaagatttctttataggctacggatacaagccttttatctgtcattgaggttacaaagattttctcccagtaagtaatctgtcatttcg-------ctgtatttttcttttcttttctttttcttt---------ttttttt--ttttGCTAGCCAAACACCAAAGTCACATTTCACTTAATTTTTATCC-GCTGAATGAAAACATTTTAACTTAGTGATTTTAGTGGAAACAGGAGCAGGACAGA-----------------------------------ATGTAA-TATCTAgatctcgctctgtcatcccaactggaatgcagtggcgtgatcatagctactgcagcctcaaactcctgggctcaagcga-ttttcccacctcagcctcccaagtagctctaggactacaggtgtgtgccgccatgcccacctaatt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170319274 418 - 171882078 tgccagtttctcctttgctgattttctgctggaaatcattcatt-tttt----tctctgagtaatttaaaatttttctttatcggctaaggatacaaacctttaatctgtcattgaggttacaaagactttctcccagtacgtaatttgtcATTTCG-------CTTTA---------------------------------------TT--TTTTGCTAGCCAAGCACCAATGTCACATTTCACTTAATTTTTATCCTGCTGCATGAAAAAATTTTAACTTAGTGATTTTACTGGAAACAGGAGCAGGACAGA-----------------------------------ATGTAA-TATCTAgatctcgctctgtcatcccaactggagtgcagtggcttgatcatagctactgcagcctcaaactcctgggctcaagtga-ttttcccacctcagcctcccaagtagctctaggactacaggtgtgtgccgccatgcccagctaatt
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36245768 423 -  75399963 tgctggtttctccattgctcattttctgctggaaatcattcatt-tttt---ttttctgagtaattttaaagatttctttataggctaacgatataaaccttttatctgtcattgaggttacaaatactttctcccaataagtaatttgtcatttca-------cttta-----------------------------------tttact--ttttgctagcaaagcaccaaagtCATATTTCACTTAATTTTTATCCTGCTGAATGAAAACATTTTAACTTAGTGGTTTTAGTTGAAACAGGAGCAGGACAGA-----------------------------------ATGTAG-TATCTAgatctcactctgtcaccccaactggagtgcagtggcatgatcttagctactgcagcctcaaactcctgggctcaagcga-ttttcccacctcagcctcccgggtagctctaggactgcaggtgtgtgccgccatgcccagctaatt
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1382158 424 +   5228064 tgctggtttctccattcctcattttctgctggaaatcattcatt-tttttttttttctgagtatttttaaagatttctttataggctagggatacaaaccttttatctgtcattgaggttacaaatactttctcccagtaagtaatttgtcatttca-------cttta-----------------------------------tttatt--tattttttgcaaagcaccaaagtCAAATTTCACTTAATTTTTATCCTGCTGAATGAAAACATTTTAACTTAGTGATTTTAGTTGAAACAGGGGCAGGACAGA-----------------------------------ATGTAA-TATCTAGAtct--ctctgtcaccctaactggagtgcagtggcatgatcttagctactgtagcctcaaactcctgggctcaagtga-ttttcccacctcagcctcccaggtagctctaggactgcaggtatgtgctgccatgcccagctaatt
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        33432 469 -     60449 tgcccctttccctattggttattttatgttggaaatgattcatt-ttct------tctgcgaaatttaaaggatttccttataggctaaggataCAAAGCTTTTCTCTGTCATTGAGGTTACAAAGACTCTCTCTCAGTAAGTGATTTCTCATTTCA-----TTTTTTA----------------------TTGTATTGC---ATTGATTGATTTTGCTAGCCAAGCACCAAAGTGACATTTCACTTAATTTTTATTCTGCTGAATGAAAGTGTTTCAACGTAGTGGTTTTAGTGTAAGCAGGAGCAGGATAGATGTAATTATCTAGGTCTCACTCTGTCACCCCACAGATGCAATTATCTAggtctcactctgtcaccccgactggagtgcagtggaatgatcgtagctactacagcctcaaactcctgggctcaagcgatttttcccacctcagcctctcaagtag--ctaaaagtacagatgtgtgctgccacgcccagctaatt
i calJac3.chrUn_GL286477    C 0 I 355
s cebCap1.NW_016107859v1       793064 423 -   1271737 tgcctatttctctgttgcttattttctgttggaaataattcatt-cttt------tctgagaaattttaaagatttctttacaggctaaggatagaaaccctttatctgtcactgaagttacaaagactttctcccaataagtaatttcttatttcg-------cttta----------------------ttTTTTTG-----TTGATTGATTTTGCCAGCCAAGCACTAAAGTCACGTTTCACTTAATGTTTATCCTGCTGACTGAAAGTGTTTTAACTTAGTGATTTTAGT-------GGAGCAGGACAGA-----------------------------------ATGTAATTATCTAggtctcgctctgtcaccccgactggggtgcagtggcatgatcgtagccactgcagcctcgaactcctgggctcaagtgatttttcccacctcagcctcccaagtag--ctaggactacaaatgtgtgctgccacgcccagctactt
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2604229 442 +   3863790 tgctcgtttctctatcggttattttatattggaaatgattcattgtttt------tctgagaaattttaaagatttctttataggctaaggatacaaaccttttatctgtcattgaggttacaaagactttctcccagtaagtaatttgtcattttactttgttTTTTA----------------------TTTTATTTATCGATTGATTGATTTTTCTAGCCAAGCACCAAAGTCACATTTCACTTAATTTTTATTCTGCTGAATGAAAGTGTTTTAACTTAGTGATTTTAGTGTAAGCAGGAGCGGGACAG------------------------------------ATGTAATTATCTAggtctcactctgtcaccccgactggagtgcagtggcatgatcatagctactacagcctcgaactcctgggctcaagtgatttttcccacctcggcctcccaagtag--ctaggactacagatgtgtgcttccatgccccaataatt
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=16663.000000
s hg38.chr15_KI270851v1_alt    100865 13 +    263054 tttaaattttctt
s panTro5.chr15               9357927 13 +  83230942 tttaaattttctt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25843083 13 +  99763055 tttaaattttctt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         5198 13 +    551209 tttaaattttctt
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164145813 13 - 169600520 ttaaaattttttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170319692 11 - 171882078 tttaaa--ttttt
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36246191 12 -  75399963 tttaca-tttttt
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1382582 13 +   5228064 tttaaattttttt
i colAng1.NW_012115722v1    C 0 C 0
s cebCap1.NW_016107859v1       793487 12 -   1271737 ttaaaaaatttg-
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2604671 12 +   3863790 ttgaaaaatttg-
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e calJac3.chrUn_GL286477        33901 355 -     60449 I

a score=4115747.000000
s hg38.chr15_KI270851v1_alt    100878 964 +    263054 tgtagagatatgaattcgctatgctgcccaggctggtctttaactcctgactt---------accccaccttagcttgccaatatgctgggagtacgggcgtgaactactgctcccagccAAGAGCTTACTTTGGTTTGCTAGCAAGGTTCTTGGTATCTTTTTATATTTGAGGCTTTCGTGCTAGTGCTGAAGTATTACACTCACCATCTGAGGTTTACAGGACTTTTGTTTTAATATTGAACCGAGGGAACTGTTTAGTTTTGCATCTTTGCAGGTATACAAAATGTGCCTACCAGGACTCTGCTTTATATCCATTGAAAAGCAAGAAGTAATACAGTAAAAGTTTGCCTGGCTACAGGCTTTGGAAGAATGGAGTATTCTGGTTTAATTCTATT--AACTTGGA--AGGATGAAGGTGGAAAAAATTCAAAACTTTAATTTCCTGTTGAATGCAATTTGAAAATATAGCCAATGAGTCCACTTTTCTTCTCTAGTAAGTTTGGACATTCAGATCTACTTGGTCTTTTATCATAGAACTCCTAGTGCGCCTGAGTCTTACGTTGTGAAAATCCTTTTCTAAAACTTTAGATGTAAGAGGATAGAAATGATATTGGATGAGATCAGGCTGGATGAGAACTGATACCTGTAGATATAT-TTTTTAGATGAAATCTCTGATTGCCACACGTTTTCTTATTGAACTCATAAAAATAAAACACACTGGCTGGAGGGTGGAAGTAGGAAGGAGATTTATGTCTTTTAATTGCATGTCATTGTTTCATATTGAGACAGAACATATAGTATCCCTGGCTTTGGACCTACAGAAGGAAACACATTTTTCTACCTGCTGTATGGCAGAGGTTCCTGAGcacctggagggattattgcagcacggattgctgggccctactgcagagtttctgattcattcatgtctagggtggggcctgagaatttacatttataagaagttccca
s panTro5.chr15               9357940 964 +  83230942 tgtagagatatgaattcgctatgctgcccaggctggtctttaactcctgactt---------accccaccttagcttgccaatatgctgggagtacgggcgtgaactactgctcccggccAAGAGCTTACTTTGGTTTGCTAGCAAGGTTCTTGGTATCTTTTTATATTTGAGGCTTTCGTGCTAGTGCTGAAGTATTACACTCACCATCTGAGGTTTACAGGACTTTTGTTTTAATATTGAACTGAGGGAACTGTTTAGTTTTGCATCTTTGCAGGTATACAAAATGTGCCTACCAGGACTCTGCTTTATATCCATTGAAAAGCAAGAAGTAATACAGTAAAAGTTTGCCTGGCTACAGGCTTTGGAAGAATGGAGTATTCTGGTTTAATTCTATT--AACTTGGA--AGGATGAAGGTGGAAAAAATTCAAAACTTTAATTTCCTGTTGAATGCAATTTGAAAATATAGCCAATGAGTCCACTTTTCTTCTCTAGTAAGTTTGGACATTCAGATCTACTTGGTCTTTTATCATAGAACTCCTAGTGCACCTGAGTCTTACGTTGTGAAAATCCTTTTCTAAAACTTTAGATGTAAGAGGATAGAAATGATATTGGATGAGATCAGGCTGGATGAGAACTGATACCTGTAGATATAT-TTTTTAGATGAAATCTCTGATTGCCACACGTTTTGTTATTGAACTCATAAAAATAAAACACACTGGCTGGAGGGTGGAAGTAGGAAGGAGATTTATGTCTTTTAATTGCATGTCATTGTTTCATATTGAGACAGACCATATAGTATCCCTGGCTTTGGACCTACAGAAGGAAACACATTTTTCTACCTGCTGTATGGCAGAGGTTCCTGAGcacctggagggattattgcagcacggattgctgggccctactgcagagtttctgattcattcatgtctagggtggggcctgagaatttacatttataagaagttccca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25843096 964 +  99763055 tgtagagatatgaattcgctatgctgcccaggctggtctttaactcctgactt---------accccaccttagcttgccaatatgctgggagtacgggcgtgaactactgctcccggccAAGAGCTTACTTTGGTTTGCTAGCAAGGTTCTTGGTATCTTTTTATATTTGAGGCTTTCGTGCTAGTGCTGAAGTATTACACTCACCATCTGAGGTTTACAGGACTTTTGTTTTAGTATTGAACTGAGGGAACTGTTTAGTTTTGCATCTTTGCAGGTATACAAAATGTGCCTACCAGGACTCTGCTTTATATCCATTGAAAAGCAAGAAGTAATACAGTAAAAGTTTGCCTGGCTACAGGCTTTGGAAGAATGGAGTATTCTGGTTTAATTCTATT--AACTTGGA--AGGATGAAGGTGGAAAAAATTCAAAACTTTAATTTCCTGTTGAATGCAATTTGAAAATATAGCCAATGAGTCCACTTTTCTTCTCTAGTAAGTTTGGACATTCAGATCTACTTGGTCTTTTATCATAGAACTCCTAGTGCGCCTGAGTCTTACGTTGTGAAAATCCTTTTCTAAAACTTTAGATGTAAGAGGATAGAAATGATATTGGATGAGATCAGGCTGGATGAGAACTGATACCTGTAGATATAT-TTTTTAGATGAAATCTCTGATTGCCACACGTTTTGTTATTGAACTCATAAAAATAAAACACACTGGCTGGAGGGTGGAAGTAGGAAGGAGATTTATGTCTTTTAATTGCATGTCATTGTTTCATATTGAGACAGACCATATAGTATCCCTGGCTTTGGACCTACAGAAGGAAACACATTTTTCTACCTGCTGTATGGCAGAGGTTCCTGAGcacctggagggattattgcagcacggattgctgggccctactgcagagtttctgattcattcatgtctagggtggggcctgagaatttacatttataagaagttccca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         5211 963 +    551209 tgtagagatatgaattcgctatgctgcccaggctggtctttaactcctgactt---------accccaccttagcttgccaatatgctgggagtatgggcgtgaactactgctcccggccAAGAGCTTACTTTGGTTTGCTAGCAAGGTTCTTGGTATCTTTTTATA-TTGAGGCTTTCGTGCTAGTGCTGAAGTATTACACTCACCATCTGAGGTTTACAGGACTTTTGTTTTAATATTGAACAGAGGGAACTGTTTAGTTTTGCATCTTTGCAGGTATACAAAACGTGCCTACCAGGACTCTGCTTTATATCCATTGAAAAGCAAGAAGTAATACAGTAAAAGTTTGCCCGGCTACAGGCTTTGGAAGAATGGAGTATTCTGGTTTAATTCTATT--AACTTGGA--AGGATGAAGGTGAAAAAAATTCAAAACTTTAATTTCCTGTTGAATGCAATTTGAAAATATAGCCAATGAGTCCACTTTTCTTCTCTAGTAAGTTTGGATATTCAGATCTACTTGGTCTTTTATCATAGAACTCCTAGTGAGCCTGAGTCTTACATTGTGAAAATCCTTTTCTAAAACTTTAGATGTAAGAGGATAGAAATGATATTGGATGAGATCAGGCTGGATGAGAACTGATACCTGTAGATATAT-TTTTTAGATGAAATCTCTGATTGCCACACGTTTTCTTATTGAACTCATAAAAATAAAACACACTGGCTGGAGGGTGGAAGTAGGAAGGAGATTTATGTCTTTTAATTGCATGTCATTGTTTCATATTGAGACAGAACATATAGTATCCCTGGCTTTGGACCTACAGAAGGAAACACATTTTTCTACCTGCTGTATGGCAGAGGTTCCTGAGcacctggagggattattgcagcacggattgctgggccctactgcagagtttctgattcattcatgtctagggtggggcctgagaatttacatttataagaagttccca
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164145826 962 - 169600520 tgtagagatatgaatttgctctgctgcccaggctggtcttgaactcctgactt---------actccaccttggcttgccaatatgctgggagaacaggcgtgaactagtgttcccggcTAACAGCTTACTTTT-TTTGCTAGTAGTGTTCTTGGTATCTTTTTATATCTGAGGCTTTCGTGCTAGTGCTGAAGTATTACACTCACCATCTGAGGTTTACAGGACTTTTGTTTTAATATCGAACAGAGGGAACTGTTTAGTTTTGCATCTTTGCAGGTATAAAAAATGTGCCTACCAGGACTCTGCTTTATATCCATTGAAAAGCAAGAAGTAATACAGTAAAACTTTGCCTGGCTAGAGGCTTTGGGAGAATGGAGTGTTCTGGTTTAATTCTATT--AACTTGGA--AGGATGAAGGTGAAACAAATTCAAAACTTTAATTTCCTGTTGAATGCGATGTGAAAATATAGCCAGTGATTCCACCTTTCTTCTCTAGTAAGTTTGGACATTCAGATCTAGTTAGTCTTTCATCATAGAACTCCTAGTGTGCCTGAGTCTTACATTGTGAAGATCCTTTTCTACAATATTACATGTAAGAGGATATAAATGATACTGGATGAGATCAGGCTGGATGAGAACTGATACTTATAAACATAC-TTTTTAGACGAAATCTCTGATTGCCATTCACTTTCTATTTGAACTCATAAAAATAAAACACATTGGCTGGAGGGTGGAAGTAGGAAGGAGATTTATGTCTTTTAATCGCATGTCATTGCTTTGTATCGAGACAGAACATATAGTATCCCTGGCTTTGGACCTACAGAAGGAAACACATTTTTCTACCTGCTGTATGCCAGCGGTTCCTGAAcacctggagggcttattgtagcctggattgctgggccctactccagagtttctgattca-tcaggtctacggaggggcctgagaatttatatctataagacattccca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170319703 960 - 171882078 tgtagagatgtgaatttgctatgctgcgcaggctggtcttgaactcctgactt---------accccaccttggcttgccaatatgctgggagtacaggcgtgaactactgctcccggccAAGAGCTTACTGTT-TTTGCTAGAGGTGTTCTTGGTATCTTTTTATATCTGAGGCTTTCATGCTAGTGCTGAAGTATTACACTCACCATCTGAGGTTTACAGGACTTTTGTTTTAATATTGAACAGAAGGACCTGTTTAGTGCTGCATCTTTGCAGGTATACAAAATGTGCCTACCAGGACTCTGCTTTATATCCATTG-AAAGCAAGAAGTGATACAGTAAAACTTTGCCTGGCTAGAAGCTTTGGGAGAATGGAGTGTTCTGGTTTAATTCTATT--AACTTGGA--AGGATGAAGGTGAAACAAATTCAAAACTTTAATTTCCTGTTGAATGCAATGTGAAAATATAGCCAGTGATTCCACCTTTCTTCTCTAGTAAGTTTCGACATTCAGATCTAGTTGGTCTTTTATCATAGAACTCCTAGTGTGCCTGAGTCTTACATTGTGAAGATCCTTTTCTAAAACTTTAGATGTAAGAGGATGTAAATGATACTGGATGAGATCAGGCTGGATGAGAACTGATATCTGTAAATATAT-GTTTTAGAAGAAATGTCTGATTGCCACTCGCTTTCTTATTGAACTCATAAAAGTAAAACACATTGGCTGGAGGGTGGAAGTAGGAAGGAGATTCATGTCTTTTAATTGCACGTCATTGTTTCATATCGAGACAGAACATATAGTATCCCTGGCTTTGGACCTACAGAAGGAAACACATTTTTCTACCTGCTGTATGCCAGCGGTTCCTGAAcacctggagggcttattgcagcgtggattgctgggccccactccagagtttctgattca-tcaggtcta-gggtgggcctgagaatttacatttataagaagttccca
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36246203 959 -  75399963 tgtagagatgtgaatttgctatgctgcccgggctgatcttgaactcctgactt---------accccaccttggcttgccaatattctgggagtacaggcgtgaactattgctcccggccAAGAGCTTACTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTTTTATATTTGAGGCTTTTGTGCTACTGCTGAAGTGTTACACTCACCATCTGAGGTTTACAGGACTTTTGTTTCAATATCGAACAGAGGGAACTGTTTAGTTTTGCATCTTCGCAGGTATACAAAATGTGCCTACCAGGACTCTGCTTTATATCCATTGAAAAGCAAGAAGTAATACAGTAAAACTTTGCCTTGCTAGAGGCTTTGGAAGAATGGAGTATTCTGGTTTAATTCTATT--AACTTGGA--AGGATGAAGGTGAAAAAAATTCAAAACTTTAATTTCCTATTGAATGCAATTTGAAAATATAGCCAGTGATTCCACTTTTCTTCTCTAGTAAGTTTGGACATTCAGATCTACTTGGTCTTTTATCATAGAAGT----GTGTGCCTGAGTCTTACATTGTGAAGATCCTTTTCTAAAACTTTAGATGTAAGAGGACATAAATGATACTGGATGAGATCAGGATGAATGAGAACTGATGCCTGTAAATATAC-TTTTTAGATGAAATCTCTGATTGCTACTCGTTTTCTTGTTGAACTCATAAAAATAAAACACACTGGCTGGAGGGTGGAAGTAGGAAGGAGATTTATGTCTTTTAATTGCATGCCATTGTTTCATATCGAGACAGAACATATTGTATTCTTGGCTTTGGACCTACAGAAGGAAACACATTTTTCTACCTGCTGCATGCCAGAGGTTCCTGAAcacctggagggcttattgcaacacggattgctgggccctactccagagtttctgattca-ccaggtctagggttgggcctgataatttacatttataagaagttccca
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1382595 961 +   5228064 tgtagagatgtgaatttgctatgctgcccaggctgatcttgaactcttgactt---------accccaccttggcttgccaatattctgggagtacaggcgtgaactactgctcccggccAAGAGCTTACTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTTTTATATTTGAGG-TTTTGTGCTAGTGCTGAAGTGTTACACTCACCATCTGAGGTTTACAGGACTTTTGTTTCAATATCGAACAGAGGGAACTGTTTAGTTTTGCATCTTCGCAGGTATACAAAATGTGCCTACCAGGACTCTGCTTTATATCCATTGAAAAGCAAGAAGTAATATAGTAAAA-TTTGCCTGGCTAGAGGCTTTGGAAGAATGGAGTATTCTGGTTTAATTCTATT--AACTTGGA--AGGATGAAGGTGAAAAAAATTCAAAACTTTAATTTCCTGTTGAATGCAATTTGAAAATATAGCCAGTGATTCCACTTTCCTTCTCTAGTAAGTTTGGACATTCAGATCTACTTGGTCTTTTATCATAGAACTACTAGTGTGCCTGAGTCTTACATTGTGAAGATCCTTTTCTAAAACTTTAGATGTAAGAGGATATAAATGATACTGGATGAGATCAGGATGAATGAGAACTGATGCCTGTAAATATAC-TTTTTAGATGAAATCTCTGATTGCCACTTGTTTTGTTGTTGAACTCATAAAAATAAAACACATTGGCTGGAGGGTGGAAGTAGGAAGGAGATTTATGTCTTTTAATTGCATGTCATTGTTTCATATCAAGACAGAACATACAGTATTCTTGGCTTTGGAGCTACAGAAGGAAACACATTTTTCTACCTGCTGTATGCCAGAGGTTCCTGAAcacctggagggcttattgcagcacggattgctgggccctacttcagagtttctgattca-ccaggtctagggttggacctgagaatttacatttataagaagttccca
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        34256 949 -     60449 tgtagagatgtgaattctctatggtgcccaggctggtcttgaactcctgacttcaagtaatcctcccaccttggtttgtcaatatgctaggattacaggtgCCAACTATTGCTCTCATCCGAGAGCTTACTTTTGTTTGCTAATGGTGTTCTTGGTATCTTTTTCTATTTTAGGCCTTGGTGCTAGTGCTGACATATTCCACCGACCATCTGAGGTTTATGGGACTTTTGTTTGAATATTGAACAGATGGAGCTGTTTAGTTCTGGGTCTTTGCAGGTATATAAAGTGTGCCTACCAGGAATCTGCT---------TTGAAGAGCAGGAAGCAATACAATAAAACTTTGCCTAGCTAGAGGCTTTGGAAGAATGGAGTATTCTGGTTTAATTCTATTAAAACTGGGAATAGAATGATGGTGATAAAAATTCAAAACTTCAATTTCCTGTTGAATGCAATGTGAAAATATAGCCAGTGATTCTGCTTTTCTTCTCTAGTAAGTTTGAACATTCAGCTCTACTTGGTCTTTTATGATAGAACTCCTAGTGTGCCTGAGTCTTCCATTGT-GAGATCCTTTCCTAAAACTTTCGATGTAAGAAGATGTAAATAATATTGGATGAAATCAGG------------------CTGTAAGTATACTTTTTTAAACAAAATCTCTGATTGCTGCTCATTTTCCTATTTTATTCATATGAATAAAACACATTGGCTGGAGGGTGAAAGCAGGAAGGAGATTTCTGTCTTTTCATTTCAAGTCATTGTTTCATATTGAGACAAAACATACAGTATCCCTGGCTTTGGACCTATAGAAGGAAACACCTTTTTCTACCTGCTGTATGCCAGAGGTTCCTGAAcacctggagggcctattgcaacacagatttctgggccctattttagagtttgtgattca-tcaggtctagggtggggtctgagagtgtgcatttataagaagttgcca
i calJac3.chrUn_GL286477    I 355 I 9
s cebCap1.NW_016107859v1       793499 972 -   1271737 tatagagatgtgaattgtctatgctgcccaggctggtcttgaactcctgacttcaagtagtcctcccaccttggcttgccaatgtgctgggattacaggtgtgaactactgctcccagccGAGAGCTTACTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTTTTCTATTTGAGGCCTTGGTGCTAGTGTTGACGTATTCCACTCACTATCTGAGGTTTACAGGACTTTTGTTTGAATATTGAACAGATGGAACTGTTTAGTTCTGGATCTTTGCAGGTATACAAAATGTGCCTACCAGGACTCTGCTTTATAAGCATTGAAAAGCAGGAAGCAATGCAGTAAAACTTTGCCTGACTAGAGGCTTTGGAAGAATGGTGTATTCTGGTTTAATGCTATT--AACCTGGA--AGCGTGAAGGTGATAAAAATTCAAAACATTAATTTTCTGTTGAATGCAGTGTGAAAATCTAGGCAATGATTCCACTTTTCTTCTCTAGTAAGATTGGACATTCAGATGTACTTGGTCTTCTGTGATAGAACTCCTAGTGTGCCTGTGTCTTCCATTGTCAAGATCCTTTCCTAAAACTTAAGATGTAAGAGGGTATAAATGATAGTCAGTGAGATCAGGCTGGATGAGAACTTACACCTGTAAATATAC-TTTTTAGACGAAATCTCTTATTTCTACTTGTTTTCTTATTTTATTCATACGAATAAAACACACTGGCTAGAGGGTGGGAGTAGGAAGGAGATTTCTGTCTTTTCATTTTATGTCATTGTTTCATACCGAGACAGAACATACAGTATCCCTGGCATTGGACCTACAGAAGGAAACACCTTTTTCTACCTGCTGTATGCCAGCAGTTCCTGAAcacctggagagcttattgcagcacagatttctgggccctactttagagtttgccattca-tcaggtctagggtggggcctgagaatgtgcatttataagaagttcccc
i cebCap1.NW_016107859v1    C 0 I 9
s aotNan1.NW_018512720v1      2604683 953 +   3863790 tatagagatgtgaattctctatgctgcccagactggtcttgaactcctgacttcaagtaatcctcccaccttggcttgccaatgtgctggcattataggtgtgaactactactcccagcTGAGCGCTTACTTTTGTTTGCTAGTGGTGTTCTTAGTATCTTTTTCTATTTGAGGGTTTGGTGCTAGTACTGATGTATTACACACACCATCTGAGGTTTACAGGACTTTTGTTTGAATATTGAACAGATGGAACTGTTTAGTTCTGGGTCTTTGCAGGTATACAAGATGTGCCTATCAGGACTCTGCGTTATAACCATTGAAAAGCAGGAAGCAATACAGTAAAACTTTGCCTGGCTAGAGG-TTTGGAAGAATGGAGTATTCTGGTTTAATTCTATT--AACTTGGA--AGAATGATGCTGATAAAAATTCAAAACTTCAATTTCCTGTTGTATGCAATGTGAAAATATAGCCAATGATTCTGCTTTTCTTCTCTAGTAAGTTTGGACATTTGGCTCTACTTGGTCTTTTATGATAGAACTCCTAGTGTGCCTGAGTCTTCCACTGTGAAGATCCTTTTCCAAAACTTTAGATGTAAAAGGATGTAAATGATATTGGATGAAATCAGG------------------CTGTAAGTATAC-GTTTTAGATGAAATCTCTGATTGCCGCTCATTTTCTTATTTTATTCATATGAATAAAACACATTGGCTGGAGATTGGAAGTAGGAAGGAGATTTCTGTGTTTTCATTTCATGTCATTGTTTCATATCGAGACAGAACATACAGTACCCCTGGCTTTGGACCTACAGAAGGAAACACCTTTTTCTACCTGCTGTATGCCAGAGGTTCCTGAAcacctggagggcttattgcagcacagatttctaggccctactttagagtttgcagttca-tcaggtctagggtggggcctgagaatgtgcatttataagaagttgcca
i aotNan1.NW_018512720v1    C 0 I 322
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=1616274.000000
s hg38.chr15_KI270851v1_alt    101842 372 +    263054 ggtgctcctggtccggagactacatgtttgagagccacCCTTACATACTAACTGTAAATTGTAGAACTCTAGAAAAAAGCGTAGTTTGGACTGGGAGAAGAAGCACACAGGTAATGGAGCAAATCATGAAAAAGTCAACCCTTGATCC-----------------CAGGTAACAAGCAATACACAGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAAGTATCGAGTGAGAAATTCAGTTTCATTTTCAGGGCTT--AGAGGCCAGGTGATTCTAGAAAAATCGGATTTAGTGATTAAC-TCATGAGAGTAGGAGTTATTTATGTCCTTTTTCTCTCCCCCATCACTTAGCATTTAGCCTTACTTTAGAAGGGTCCTG
s panTro5.chr15               9358904 373 +  83230942 ggtgctcctggtccagagactatatgtttgagagccacCCTTACATACTAACTGTAAATTGTAGAACTCTAGAAAAAAGCGTAGTTTGGACTGGGAGAAGAAGCACACAGGTAATGGAGCAAATCATGAAAAAGTCAACCTGTGATCC-----------------CAGGTAACAAGCAATACACAGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAAGTATCGAGTGAGAAATTCAGTTTCATTTTCAGGGCTT--AGAGGCCAGGTGATTCTAGAAAAATCGGATTTAGTGATTAACCTCATGAGAGTAGGAGTTATTTATGTCCTTTTTCTCTCCCCCATCACTTAGCATTTAGCCTTACTTTAGAAGGGTCCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25844060 373 +  99763055 ggtgctcctggtccagagactatatgtttgagagccacCCTTACATACTAACTGTAAATTGTAGAACTCTAGAAAAAAGCGTAGTTTGGACTGGGAGAAGAAGCACACAGGTAATGGAGCAAATCATGAAAAAGTCAACCCGTGATCC-----------------CAGGTAACAAGCAATACACAGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAAGTATCGAGTGAGAAATTCAGTTTCATTTTCAGGGCTT--AGAGGCCAGGTGATTCTAGAAAAATCGGATTTAGTGATTAACCTCATGAGAGTAGGAGTTATTTATGTCCTTTTTCTCTCCCCCATCACTTAGCATTTAGCCTTACTTTAGAAGGGTCCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         6174 373 +    551209 ggtgctcctggtccagagactatatgtttgagagccacCCTTACATACTAACTGTAAATTGTAGAACTCTAGAAAAAAGCGTAGTTTGGACTGGGAGAAGAAGCACACAGGTAATGGAGCAAATCATGAAAAAGTCAACCCTTGATCC-----------------CAGGTAACAAGCAATACACAGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAAGTATCGAGTGAGAAATTCAGTTTCATTTTCAGGGCTT--AGAGGCCAGGTGATCCTAGAAAAATCGGATTTAGTGATTAACCTCATGAGAGTAGGAGTTATTTATGTTCTTTTTCTCTCCCCCATCACTTAGCATTTAGCCTTACTTTAGAAGGGTCCTG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164146788 374 - 169600520 agtgctcctggttcagagactatatttttgagaagcactCTTATATACTAACTGTAAATTGTAGAACTTTAGAAAAAAGCTTAGTTTGGTCTGGGATAAGAAGCACACAGGTAATGGAGCAAATCATGAAAAAGTCAACCCTTGATCC-----------------CAGGTAGCAAGCAATACACAGTGACAGAACACAACTCTTGGTTTTCATGATTGCAAGTCATAGCCAAGTATCGAGTGAGAAATTCAGTTTCATTTTCAGGGATTAGAGAGGGCAGGTGATTCTAGAAAAATAGGATTTAGTGATTAACCTCATGAGAGTGACAGTTATTTATGTCCTTTCTCTCTCCCCCATCACTTAGCATTTAGCCTTACTTTAG-AGGGTCCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170320663 374 - 171882078 ggtgctcctggtccagagactatagttttgagagccactCTTATATACTAACTATAAATTGTAGAACTCTAGAAAAAAGCTTAGTTTGGTCTGGCATAAGCAGCACACAGGTAATGGAGCAAATCATGAAAAACTCAACCCTTGATCC-----------------CAGGTAGCAAGCACTACACAGTGACAGAACACAACTCTTGGTTTTCATGATTGCAAGTCATAGCCAATCACTGAGAGAGAAATTCAGTTTCATTTTCAGGGCTTAGAGAGGCCAGGTGATTCTAGAAAAATAGGATTTAGTGATTAACCTCATGAGAGTAGGAGTTATTTATGTCCTTTTTCTCTCACGCATCACTTAGCATTTAGCCTTACTTTAG-AGGGTCCTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36247162 374 -  75399963 ggtgctcctggtccagagactatatttttgagaaccactCTTATATACTAACTGGAAATTGTAGAACTATAG-AAAAAGCTTAGTTTGGTCTGGGATAAGAAGCACACAGGTAATGGAGCAAATCATGAAAAAGTCAACCCTTGATCT-----------------CAGGTAACAAGCAATACACAGTGACATAACACAATTCTTGGTTTTCATCATTGCAAGTCATAGCCAAGTGTTGAGTGAGAAATTCAGTTTCATTTGCAGGGCTTAGAGAGGCCGGGTGATTCTAGAAAAATAGGATTTAGTGATTAACCTCATGAGAGTAGGAGTTATTTATGTCCTTTTTCTCTCCCCCATCACTTAGCATTTAGCCTTACTTTAGAAGGGTCCTG
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1383556 375 +   5228064 ggtgctcctggtccagagactatatttttgagaaccactCTTGTATACTAACTGTAAATTGTAGAACTGTAGAAAAAAGCTTAGTTTGGTCTGGGATAAGAAGCACACAGGTAATGGAGCAAATCATGAAAAAGTCAACTCTTGATCC-----------------CAGGTAACAAGCAATACACAGTGACATAACACAATTCTCGGTTTTCCTCATTGCAAGTCAGAGCCAAGTGTTGAGTGTGAAATTCAGTTTCATTTGCAGGGCTTAGAGAGGCCAGGTGATTCTAGAAAAATAGGATTTAGTGATTAACCTCATGAGAGTAGGAGTTATTTATGTCCTTTTTCTCTCCCCCATCACTTAGCATTTAGCCTTACTTTAGAAGGGTCCTg
i colAng1.NW_012115722v1    C 0 I 971
s calJac3.chrUn_GL286477        35214 390 -     60449 ggtgctgctggtgcaaagactgcatttttgagaaccactCTTATATACGAACTGTAAATTTTAGAACTCTAGAAAATAGCTTAGTTTGGTCTGGGATAA-AAGCACACAGGTAATGGAGCAAATCAT-AAAAAATTAACTCTTGATCCCAGCCTAATGTGAAATTCAGGTAACAAGCAGTACGCAGTGATACAACACAATTCTTGGATTTTATGATTGCAAGTCATAGCCAAGTATCAAATGAGAAATTCAGTTTCATTCATAGGACTTAGAGAGGCCAGGTGATTCTAGAAAAATGGGATTTAGTGATTAACCTCATGAGAGTAGGAGTTATTTATGTCCTTTTTCTCTCCCCCATCACTTAGCATTCAGCCTTACTTCAGAAGGGTCTTG
i calJac3.chrUn_GL286477    I 9 C 0
s cebCap1.NW_016107859v1       794480 374 -   1271737 ggtgctg----------gtctacatttttgagaaccactCTTATATACTAGCTGTAAATTGTAGAACTCCAGAAAAAAGCTTAGTTTGGTCTAGGATAA-AAGCACACAGGTAATGGAGCAAATCATGAAAAAGTCAACCCTTGATCCCAGCCTAATGTGGAATTCAGGTAACAAGCAATATACAGTGACATAACACAGTTCTAGGTTTTCATGATTGCAAGTCATAGCCCAGTATCAAGTGAGAAATTCAGTTT-ATTCACAGGACTT----AGGCCAGATGATTCTAGAAAAATAGGATTTAGTGATTAACCACATGAGAGTGAGAGTTATTTATGTCCTTTT--TCTCCCCCATCACTTAGCATTCAGCCTTACGTTAGGAGTGTCTTG
i cebCap1.NW_016107859v1    I 9 C 0
s aotNan1.NW_018512720v1      2605958 384 +   3863790 ggtgctgctggtccaaagagtacatttttgagaactactCTTATATACTAACTGTAAATTGTAGAACTCTAGAAAACAGCTTAGTTTGGTCTGGGATAA-AAGCACACAGGCAATGGAGCAAATCATGAAAAAGTCAACCCTTGATCCCAGCCT-------AATTCAGGTAACAAGCAATGCACAGTGACATAACACAATTCTCGGTTTTCATGATTGCAAGTCATAGCCAAGTATCAAGTGAGAAATTCAGTTTCATTCACAGGACTTGGAGAGGCCAGGTGATTCTAGAAAAATAGGATTTAGTGATTAACCTCATGAGAGTAGGAGTTATTTATGTCCTTTTTCTCTCCTCCATCACTTAGTATTCAGCCTTACTTTAGGAGGGTCTTA
i aotNan1.NW_018512720v1    I 322 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=193093.000000
s hg38.chr15_KI270851v1_alt    102214 85 +    263054 TATTTGCTTTAACCTTGTAAAGAACTTTGAGTGCTTATTAAATGGAAAGCCTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtct
s panTro5.chr15               9359277 83 +  83230942 TATTTGCTTTAACCTTGTAAAGAACTTTGAGTGCTTATTAAATGGAAAGCCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25844433 79 +  99763055 TATTTGCTTTAACCTTGTAAAGAACTTTGAGTGCTTATTAAATGGAAAGCCgtgtgtgtgtgtgtgtgtgtgtgtgtgt------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         6547 76 +    551209 TATTTGCTTTAACCTTGTAAAGAACTTTGAGTGCTTATTAAATGGAAAGCCgtgtgtgtgtgtg---gtgtgtgtgtgt------
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164147162 85 - 169600520 TATTTGTTTTAAACTTGTAAAGAACTTTGAGTGCTTATTAAATGGAAAGCTTTCCGTGTGCGTGCAtgtgtgtgtgtgtgtgtgt
i rheMac8.chr7              C 0 I 10
s macFas5.chr7              170321037 85 - 171882078 TATTTGTTTTAAACTTGTAAAGACCTTTGAGTGTTTATTAAATGGAAAGCTTtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgt
i macFas5.chr7              C 0 I 123
s chlSab2.chr5               36247536 85 -  75399963 TATTTGTTTTAAACTTACAAAGAACTTTGAGTGCTTATTAAATGGAAAGCTCtgtgtgtgtgtgtgtgtgtgtgtgtatgtatat
i chlSab2.chr5              C 0 C 0
s calJac3.chrUn_GL286477        35604 52 -     60449 TATTTGTTTTAAACTGGTAAAGAGCTTTGAATGCCGATTAAGTGGAAAGCTT---------------------------------
i calJac3.chrUn_GL286477    C 0 C 0
s cebCap1.NW_016107859v1       794854 52 -   1271737 TATTTGTTTTAAACTGGTAAAGAGCTTTGAATACTTATTAAGTGGAAAGCTT---------------------------------
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2606342 52 +   3863790 TATTTGTTTTAAACTGGTAAAGAGCTTTGAATGCTTATTAAATGGAAAGCTT---------------------------------
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1383931 971 +   5228064 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=81317.000000
s hg38.chr15_KI270851v1_alt    102299 74 +    263054 gtgcgtgtgtgtgtgtgtgtctgtgcgtgtgtgtgtgtgtgtgtgtAtttagagacagagtcacgttctgtagc
s panTro5.chr15               9359360 36 +  83230942 --------------------------------------gtgtgtgtAtttagagacagagtcacgttctgtagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25844512 36 +  99763055 --------------------------------------gtgtgtgtAtttagagacagagtcacgttctgtagc
i panPan2.chr15             C 0 I 482
s gorGor5.CYUI01015853v1         6623 36 +    551209 --------------------------------------gtgtgtgtAtttagagacagagtcacgttctgtagc
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164147257 71 - 169600520 atctgtgtgtgtgtgtgtgtatgtgtgtgcgtgtgtgtgtgtgtgtAtttagagacagagtcttgttctgt---
i rheMac8.chr7              I 10 C 0
s macFas5.chr7              170321245 71 - 171882078 gtgcgtgtgtgtgtgtgtccgtgtgtgtgtgtgtgtgtgtgtATGTAtttagagacagagactcattctgt---
i macFas5.chr7              I 123 C 0
s chlSab2.chr5               36247621 45 -  75399963 --------------------------atgtatgtatgtatgtatgtaCTTAgagacagagtctccttctgt---
i chlSab2.chr5              C 0 C 0
s calJac3.chrUn_GL286477        35656 42 -     60449 -----------------------------TGTGTAtttatttatttatttggagacagagtctcactctgt---
i calJac3.chrUn_GL286477    C 0 C 0
s cebCap1.NW_016107859v1       794906 42 -   1271737 -----------------------------TGTGTAtttatttatttattttgagacagagtctcattctgt---
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2606394 42 +   3863790 -----------------------------TGTGTAtttatttatttactttgagacacagtctcattctgt---
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1383931 971 +   5228064 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=197510.000000
s hg38.chr15_KI270851v1_alt    102373 59 +    263054 agcccaggctgaagtgcagtggcatga-ttttggctcactgcaacctctgcctcacaggt
s panTro5.chr15               9359396 59 +  83230942 agcccaggctgaagtgcagtggcatga-ttttggctcactgcaacctctgcctcacaggt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73942232 59 -  99763055 agcccaggctcgagtgcagtggcacga-tctgagctcactgcaagctccacctcctgggt
i panPan2.chr15             I 23725 C 0
s gorGor5.CYUI01015853v1         6659 59 +    551209 agcccaggctgaagtgcagtggcatga-ttttggctcactgcaacctctgcctcacaggt
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164147328 59 - 169600520 agcccaggctgaagtgtagtggcacga-ttttggctcactgcaacctccgcctcccaggt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170321316 59 - 171882078 agcccaggctgaagtgcagtggcatga-ttttggctcactgcaacctccgcctcccaggt
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36247666 59 -  75399963 agcccaggttgaagtgcagtggcatga-ttttggcacactgcaacctccttctcccaagt
i chlSab2.chr5              C 0 C 0
s calJac3.chrUn_GL286477        35698 60 -     60449 tacccaggctgaagtgcagtggcatgatttttggctcactgcaacctctgcttcttggat
i calJac3.chrUn_GL286477    C 0 C 0
s cebCap1.NW_016107859v1       794948 59 -   1271737 ttcccaggctgaagtgcagtggcacaa-ttttggctcactgcaacctccacttcttgggt
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2606436 59 +   3863790 tgcccaggttgaagtgcagtggcatga-tttgggcttactgcaacctccacttcttgggt
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1383931 971 +   5228064 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=491983.000000
s hg38.chr15_KI270851v1_alt    102432 138 +    263054 tcaagggattctcctgcctcagcctcccaagtagctaggattacaggcacctgccac--catgcccagcta------------cttttgtatttttagtagagacaggatttcatcatgttggccaggctgg-tcttgaactcctgaattcgg
s panTro5.chr15               9359455 138 +  83230942 tcaagggattctcctgcctcagcctcccaagtagctgggattacaggcacctgccac--catgcccagcta------------cttttgtatttttagtagagacaggatttcatcatgttggccaggctgg-tcttgaactcctgaattcgg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73942291 139 -  99763055 tcacgccattctcctgcctcagcttcccaagtagctgggactacaggcacccaccac--cacgcctggcta---------atttttttgtatttttagtagagatgtggtttcacctttttagtcaggatgg-tctcaatctcctgacctc--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         6718 138 +    551209 tcaagggattctcctgcctcagcctcccaagtagctgggattacaggcacctgccac--catgcccagcta------------cttttgtatttttagtagagacaggatttcatcatgttggccaggctgg-tcttgaactcctgaattcgg
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164147387 138 - 169600520 tcaagggattctcctgcctcagcctcccaagtagctgggattacagacacctgccac--catgcccagcta------------gttttgtatttttaatagagacagggtttcatcatgttggccaagctgg-tcttgaactcctgaactcag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170321375 137 - 171882078 tcaa-ggattctcctgcctcagcatcccgagtaactgggattacaggcacctgccac--catgcccagcta------------gttttggatttttcgtagagaaagggtttcatcatgttggccaggctgg-tcttgaactcctgaattcag
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36247725 138 -  75399963 tcaagggattctcctgcctcagcttcccaagtagctgggataacgggcacctgccac--catgcccagcta------------gttttgtatttttagtagagacagggtttcatcatgttggccaggctgg-tcttgaactcctgaactctg
i chlSab2.chr5              C 0 C 0
s calJac3.chrUn_GL286477        35758 139 -     60449 tcaagcaattctcctgccgcaatctcccaagcagctgggattacaggctcccgccac--catgcccagcta-----------gtttttatatttttcatagagataaggtttcattatgttggccaggctgg-tcttgaactcctgacctcag
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10482709 151 -  54856640 tcaagtgattctcccacctgagcctcccaaagtgttaagattacaggtgtgagctaccacATGCCAAGTCATTAAtctttttttttttttttttttttttgagaca--gtcttgttctgtcgcccgggctggattacaggggcatgagcttgg
i saiBol1.JH378108          N 0 C 0
s cebCap1.NW_016107859v1       795007 139 -   1271737 tcaagcaattctcctgcctcagtctcccaagcagctgggattacaggctcccgccac--catgcccagcta-----------gtttttgtatttttagtagagatagggtttcatcatattggccaggctgg-tcttgaactcctgacctcag
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2606495 139 +   3863790 tcaagcaattctcctgcctcagtctcccaagcagctgggattacaggctcccaccat--gatgcccagcta-----------gtttttgtatttttaatagagatagggtttcatcatattggccaggctgg-ttgtgaactcctgacctcag
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1383931 971 +   5228064 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=428482.000000
s hg38.chr15_KI270851v1_alt    102570 103 +    263054 gtgatccacccgccccagcctcccaaagtgctgggattacaggcatgagccatcacgcctggcTC-AAAGCTTTGTATTTTTAAAGATATTAGACAtgtttctt
s panTro5.chr15               9359593 103 +  83230942 gtgatccacccgccccagccccccaaattgctgggattacaggcatgagccatcacgcctggcTC-AAAGCTTCGTATTTTTAAAGATATTAGACATGTTTCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73942430 104 -  99763055 atgatccaccagcctcaggctcctaaagtgctggaattatacgcataagccactgcacccggccCAAAAGCTTTGTGTTTTTACAAATATTAGACATGTTTCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         6856 103 +    551209 gtgatccacccgccccagcctcccaaagtgctgggattacaggcatgagccatcacgcctggcTC-AAAGCTTTGTATTTTTAAAGATATTAGACATGTTTCTT
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164147525 104 - 169600520 gtgatccacccaccccagcctcccaaagtgctggggttacaggcatgagccgccatacctggcTCACAAGCTTTGTGTTTTTAAAGATATTAGACATGtttctt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170321512 102 - 171882078 gtgatccacctgccccagcctcctaaagtgctgggattacaggcatgatgcaccgcgcctggcTCAAAAGCTTTGTGTTTTTAAAGATATTATACATGTTTC--
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36247863 101 -  75399963 gtga---gaccatcccagcctcccaaagtgctgggattacaggcatgagccaccatgcctggcTCAAAAGTTTTGTGTTTTTAAAGATATTAGACATGtttttt
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1384902 103 +   5228064 gtgatccgcccgtctcggcctcccaaagtgctgggattacaggcttgagccaccgtgcccggc-cAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTCTT
i colAng1.NW_012115722v1    I 971 C 0
s calJac3.chrUn_GL286477        35897 104 -     60449 gtgatccacccacctcagcttcccaaagtgatgggattacaggcatgagccaccatgcccggcTCAAAGGCTTTGTGTTTTTAAAGATGTTAGACGTGtttctt
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10482860  80 -  54856640 --------ctcgctccaacctcc---agctcctggatt-caagc---aatcctcatgcctggct---aatttttgtatttt------tggtagagatgtcaccg
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       795146 104 -   1271737 gtgatccacacacctcagcctcccaaagtgctgggattacaggcatgagccaccatgcccggcTCAAAAGCTTTGTGTTTTTAAAGATGTTAGACATGtttctt
i cebCap1.NW_016107859v1    C 0 I 393
s aotNan1.NW_018512720v1      2606634 104 +   3863790 gtgatccatccacctcagcctcccaaagtgccaggattacaggcatgagtcaccatgcccagcTCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTCTT
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=-6002.000000
s hg38.chr15_KI270851v1_alt    102673 4 +    263054 -gttt
s panTro5.chr15               9359696 4 +  83230942 -GTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73942534 4 -  99763055 -GTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         6959 4 +    551209 -GTTT
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164147629 4 - 169600520 -attt
i rheMac8.chr7              C 0 C 0
s chlSab2.chr5               36247964 4 -  75399963 -tttt
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385005 3 +   5228064 -TTT-
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        36001 3 -     60449 ttt--
i calJac3.chrUn_GL286477    C 0 I 1
s saiBol1.JH378108           10482940 3 -  54856640 tgt--
i saiBol1.JH378108          C 0 I 1
s aotNan1.NW_018512720v1      2606738 2 +   3863790 -GT--
i aotNan1.NW_018512720v1    C 0 I 49
e cebCap1.NW_016107859v1       795250 393 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677 8 +    138091 I
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e macFas5.chr7              170321614 0 - 171882078 C

a score=-15102.000000
s hg38.chr15_KI270851v1_alt    102677 14 +    263054 gtttgt-----------ttttttTT------
s panTro5.chr15               9359700 13 +  83230942 TCTTTT-----------TTTTTTT-------
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         6963 13 +    551209 TTCTTT-----------TTTTTTA-------
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164147633 24 - 169600520 tctttttttttttttggttttttt-------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170321614  7 - 171882078 -----------------TTTTTTT-------
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36247968 11 -  75399963 tttt-------------atttttt-------
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385008  7 +   5228064 -----------------TTTTGTA-------
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        36005 14 -     60449 ----------t------cttttct-ttcttt
i calJac3.chrUn_GL286477    I 1 I 955
s saiBol1.JH378108           10482944 15 -  54856640 ----------ggccagactggtct-t-----
i saiBol1.JH378108          I 1 C 0
e aotNan1.NW_018512720v1      2606740 49 +   3863790 I
e cebCap1.NW_016107859v1       795250 393 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              73942538  0 -  99763055 C
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=133.000000
s hg38.chr15_KI270851v1_alt    102691 16 +    263054 AAA------AAAA------CTAAACGCT
s panTro5.chr15               9359713 15 +  83230942 -AA------AAAA------CTAAACACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73942538 21 -  99763055 -AA------GAAAAAAAGTCTTCACAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         6976 15 +    551209 -AA------AAAA------CTAAACACT
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164147657 25 - 169600520 -AAAAAAACAAAA--AACCCTTAACAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170321621 19 - 171882078 -AA------AAAA--AAACTTTAACAAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36247979 11 -  75399963 -AA----------------CTTAACAAT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385015 11 +   5228064 -AA----------------CTTAACAAT
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10482959 10 -  54856640 --a------aaAA------TTAAA----
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018512720v1      2606740 49 +   3863790 I
e cebCap1.NW_016107859v1       795250 393 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e calJac3.chrUn_GL286477        36019 955 -     60449 I

a score=61763.000000
s hg38.chr15_KI270851v1_alt    102707 24 +    263054 AATGTAGGAGAATAAGAGAAA-GTT
s panTro5.chr15               9359728 24 +  83230942 AATGTAGGAGAATAAGAGAAA-GTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73942559 25 -  99763055 AACGTAGGAGAATAAGAGAGACATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         6991 24 +    551209 AATGTAGGAGAATAAGAGAAA-GTT
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164147682 24 - 169600520 AATGTAGGAGAACAAGAGAAA-GTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170321640 18 - 171882078 AA------AGTACGAGAGTAA-GCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36247990 24 -  75399963 AATGTAGAAGAATCAGAGAAA-GTT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385026 24 +   5228064 AATGTAGGAGAATCAGAGAAA-GTT
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10482969 24 -  54856640 AATGTAGGAGACTAAAAGAAA-CTT
i saiBol1.JH378108          C 0 I 1
s aotNan1.NW_018512720v1      2606789 24 +   3863790 aaTGTAGGAGATTAAGAGAAA-CAT
i aotNan1.NW_018512720v1    I 49 C 0
e cebCap1.NW_016107859v1       795250 393 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e calJac3.chrUn_GL286477        36019 955 -     60449 I

a score=100325.000000
s hg38.chr15_KI270851v1_alt    102731 28 +    263054 TTTCCAAAAAAGAGAAAACATTGTGA-----TT
s panTro5.chr15               9359752 28 +  83230942 TTTCCAAAAAAGAGAAAACATTGTGA-----TT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73942584 33 -  99763055 TTTCCAAAAAAGGGAAGTCATTGTGATTATTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         7015 28 +    551209 TTTCCAAAAAAGAGAAAACATTGTGA-----TT
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164147706 32 - 169600520 TTTCCAAAAAAGAGAAATCATTGTGATTAT-TT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170321658 33 - 171882078 TTTCCAAAAAAGAGAAATCATTGTGATTATATT
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248014 33 -  75399963 TTTCCAAAAAAGAGAAATCATTGTGATTATTTT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385050 33 +   5228064 TTTCCTAAAAAGAGAAATCATTGTGATTATTTT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        36974 28 -     60449 tctcaaaaaaaaaaaaaTCATTGTGA-----TT
i calJac3.chrUn_GL286477    I 955 I 5
s saiBol1.JH378108           10482994 28 -  54856640 TCAAAAAAAAAAAAAAATCATTGTGA-----TT
i saiBol1.JH378108          I 1 I 5
s aotNan1.NW_018512720v1      2606813 27 +   3863790 -TTTCAAAAAAAAAAAATCATTGTGA-----TT
i aotNan1.NW_018512720v1    C 0 I 5
e cebCap1.NW_016107859v1       795250 393 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=160712.000000
s hg38.chr15_KI270851v1_alt    102759 31 +    263054 ATCTTATTGGAATGTTGGATAAT--AAAGTCTG
s panTro5.chr15               9359780 31 +  83230942 ATCTTACTGGAATGTTGGATAAT--AAAGTCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73942617 31 -  99763055 ATCTTATTGGAATGTTGGATAAT--TTAGTCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         7043 31 +    551209 ATCTTATTGGAATGTTGGATAAT--AAAGTCTG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164147738 31 - 169600520 ATCTTAGTGAAATGCTGGATAAT--ATAGTCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170321691 31 - 171882078 ATCTTATTGGAATGTTGGATAAT--ACAGTCTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248047 31 -  75399963 ATCTTATTGGAATGTTGGATAAT--ATAGTCTG
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385083 31 +   5228064 ATCTTATTGGAATGTTGGATAAT--ATAGTCTG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37007 31 -     60449 ATCTCATTGGAATGTTGGATAAT--ACAGTCTG
i calJac3.chrUn_GL286477    I 5 C 0
s saiBol1.JH378108           10483027 31 -  54856640 ATCTCATTGGAATGTTGGATAAT--ACAGTCTG
i saiBol1.JH378108          I 5 C 0
s cebCap1.NW_016107859v1       795643 31 -   1271737 ATCTCATTGGAATGTTGGATAAT--ACAGTCTG
i cebCap1.NW_016107859v1    I 393 I 24
s aotNan1.NW_018512720v1      2606845 33 +   3863790 ATGTAATTGGAATATTGGATAATACACAGTCTG
i aotNan1.NW_018512720v1    I 5 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=140884.000000
s hg38.chr15_KI270851v1_alt    102790 58 +    263054 CTTTATCAATCAT---CAAGCACACTATAAAATTTCCATTTTAATAGGACTTGTACCTCAA
s panTro5.chr15               9359811 58 +  83230942 CTTTATCAATCAT---CAAGCACACTATAAAATTTCCATTTTAATAGGACTTGTACCTCAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73942648 58 -  99763055 CTTCAGTAATCAT---CAAGCATGCTATGGATTTTCCATTTTTATAGGATCTGTATCTCGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         7074 58 +    551209 CTTTATCAATCAT---CAAGCACACTATAAAATTTCCATTTTAATAGGACTTGTACCTCAA
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164147769 58 - 169600520 CTTTATCAATCAT---CAAGCACACTATAAAATTTCCATTTCAATAGGATTTGTACTTCAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170321722 57 - 171882078 CTTTATCAATTAT---CAAGCACACTATAAAA-TTCCATTTTCATAGGATTTGTACCTCAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248078 58 -  75399963 CTTTATCAATCAT---CAAGCACACTATAAAATTTCCATTTTAATAGGATTTGTACCTCAA
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385114 58 +   5228064 CTTTGTCAATCAT---CAAGCACACTATAAAATTTCCATTTTAATAGGATTTGTACCTCAA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37038 27 -     60449 ----GTC-ATCATCAACAAGCATGCTATGGAT-----------------------------
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10483058 24 -  54856640 ----GTC-ATGGT---CAAACATGCTATAGAT-----------------------------
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2606878 54 +   3863790 ---CATC-ATCGT---CAAGCATGCTATGGATTTTTCATTTTAATAAGATTTGTATCTCAA
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       795674 24 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=63624.000000
s hg38.chr15_KI270851v1_alt    102848 11 +    263054 TTGAGGTAATA
s panTro5.chr15               9359869 11 +  83230942 TTGAGGTAATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73942706 11 -  99763055 TTAAGGTAATA
i panPan2.chr15             C 0 I 201
s gorGor5.CYUI01015853v1         7132 11 +    551209 TTGAGGTAATA
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164147827 11 - 169600520 TTGAGGTAATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170321779 11 - 171882078 TTGAGGTAATA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248136 11 -  75399963 TTGAGGTAATA
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385172 11 +   5228064 CTGAGATAATA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37065 11 -     60449 TTGAGGTAATA
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10483082 11 -  54856640 TTGAGGTAATA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       795698 11 -   1271737 TTGAGGTAATA
i cebCap1.NW_016107859v1    I 24 C 0
s aotNan1.NW_018512720v1      2606932 11 +   3863790 TTGAGGTAATA
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=178344.000000
s hg38.chr15_KI270851v1_alt    102859 35 +    263054 AA-GTTTTAAAGTTTTTAAAGTGAAAGCCAGCCCCG
s panTro5.chr15               9359880 36 +  83230942 AAAGTTTTAAAGTTTTTAAAGTGAAAGCCAGCCCCG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25845030 35 +  99763055 AA-GTTTTAAAGTTTTTAAGGTGAAAGCCAGCCCCG
i panPan2.chr15             I 482 I 54
s gorGor5.CYUI01015853v1         7143 35 +    551209 AA-GTTTTAAAGTTTTTAAAGTGAAAGCCAGCCCCG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164147838 35 - 169600520 CA-GTTTTAAAGTTTTTAAAGTGAAAGCCAGCCCCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170321790 34 - 171882078 CA-GTTTTAAAGTTTTTAAAGTGAAAGCCAG-CCCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248147 35 -  75399963 AA-GTTTTAAAGTTTTTAAAGTGAAAGCCAGCCCCG
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385183 35 +   5228064 AA-GTTTTAAAGTTTTTAAAGTGAAAGCCAGCCCTG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37076 35 -     60449 AA-GTTTTAAAGTTTTTCAAGTGAAACCCAGCCCTG
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10483093 35 -  54856640 AA-GTTTTAAAGTTTTTCAAGTGAAGCCCAGCCCTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       795709 35 -   1271737 AA-GTTTTAAAGTTTCTCAAGTGAAGCCCAGCCCTG
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2606943 35 +   3863790 AA-GTTTTAAAGTTTTTCAAGTGAAACCCAGCCCTG
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=215463.000000
s hg38.chr15_KI270851v1_alt    102894 50 +    263054 CCCCTCTCCTGGAGTGGGCGGGGACAGCGGTTGCATAG-GCAGCTTTCCTT
s panTro5.chr15               9359916 50 +  83230942 CCCCTCTCCTGGAGTGGGCGGGGACAGCGGTTGCATAG-GCAGCTTTCCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73942918 50 -  99763055 CCCCTCTCTTAGAGTGGGTGGGGACAGTGGTTGCATGG-GCAGCTTTCCTT
i panPan2.chr15             I 201 C 0
s gorGor5.CYUI01015853v1         7178 50 +    551209 CCCCTCTCCTAGAGTGGGCGGGGACAGCGGTTGCATAG-GCAGCTTTCCTT
i gorGor5.CYUI01015853v1    C 0 I 470
s rheMac8.chr7              164147873 50 - 169600520 CCCCTCTCCTGGAGTGGGCGGGGACAGCAGTTACATGG-GCAGCTTTCCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170321824 50 - 171882078 CCCCTCTCCTGGAGTGGGCGGGGACAGCGGTTGCAGGG-ACAGCTTTCCTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248182 51 -  75399963 CCCCTCTCTGGGAGTGGGCGGGGACAGCAGTTGCATGGAGTGGCTTTCCCT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385218 50 +   5228064 CCCCTCTTTGGGAGTGGGCGGGGACAGCAGTTGCATGG-GTGGCTTTCCTT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37111 50 -     60449 CCCCTCTACTGGAGTGGGCAGGGGCAGCTGGTGCATGG-GCAGCCTTCATT
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10483128 50 -  54856640 CCCCTCTCCTGGAGTGGGCGGGGGCAGCTGGTGCATGG-GCAGTCTTCATT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       795744 28 -   1271737 CCCCTCTCCTGGAGT----------------------G-GCAGCCTTCATT
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2606978 50 +   3863790 CCCATCTCCTGGAGTGGGCGGGGGCAGCAGGTGCATGA-GTAACTTTCATT
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=21010.000000
s hg38.chr15_KI270851v1_alt    102944 4 +    263054 GTGA
s panTro5.chr15               9359966 4 +  83230942 GTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73942968 4 -  99763055 GTGA
i panPan2.chr15             C 0 I 22
s rheMac8.chr7              164147923 4 - 169600520 GTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170321874 4 - 171882078 GTGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248233 4 -  75399963 GTGA
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385268 4 +   5228064 GTGA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37161 4 -     60449 GTGA
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10483178 4 -  54856640 GTGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       795772 4 -   1271737 GTGA
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2607028 4 +   3863790 GTGA
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677 8 +    138091 I
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=79913.000000
s hg38.chr15_KI270851v1_alt    102948 24 +    263054 CAACACAGGT-CCTTGATGACACGC
s panTro5.chr15               9359970 24 +  83230942 CAACACAGAT-CCTTCATGACACGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25845119 24 +  99763055 CAACACAGAT-CCTTCATGACACAC
i panPan2.chr15             I 54 I 152
s rheMac8.chr7              164147927 24 - 169600520 CATCACAGGT-CCTTCGTGACACGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170321878 19 - 171882078 CACCACAGGT-CCTTCATGA-----
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248237 24 -  75399963 CATCACAGGT-CCTTCATGACGTGC
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385272 24 +   5228064 CACCACAGGT-CCTTCATGACGTGC
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37165 24 -     60449 CACCACAGGT-TCCTCATGACACAC
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10483182 24 -  54856640 CACCACAGGT-CCCTCAGGACACAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       795776 24 -   1271737 CACCACAGGT-CCCTCGTGACACAC
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2607032 25 +   3863790 CGCCAGGGGTCCCCTCATGACACAC
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=520225.000000
s hg38.chr15_KI270851v1_alt    102972 131 +    263054 TGCTGTCTGGCCACACCTCCTTTTCCTTTCATCTTTCTCATTGACCAATGGGCTTCAAGCATGAAGGCCACACCCCTATTCTGCATTCTAGT-GCAGCCCTGGTTACGCCTCCTCTGGCTCAGTCACACAGC
s panTro5.chr15               9359994 131 +  83230942 TGCTGTCTGGCCACACCTCCTTTTCCTTTCATCTTTCTCATTGACCAATGGGCTTCAAGCATTAAGGCCACACCCCTATTCAGCATTCTAGT-GCAGCCCTGGTTACGCCTCCTCTGGCTCAGTCACACAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73942994 131 -  99763055 TGATGCCTGGCCACGCCCCCTTTCCCTTTCATCTTTCTCATTAACCAATGGACGTGGAGCATTAAGGCCACGCCCCTATTCTGCCTTCTACT-GTATCCCTGGTTACGCCTCCTCTGGCTCAGTCGCACAGC
i panPan2.chr15             I 22 C 0
s rheMac8.chr7              164147951 130 - 169600520 TGCTGTCTGGCCACGCCTCCTTTCCCTTGCATCTTTCTCATTGACCAATAGGCTTGAAGCATTAAGGCCACGCCCCTA-TCTGCATTCTAGT-GTGGCCCTGGTTACGCCTCCTCTGGCTCAGTCACACAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170321897 120 - 171882078 -----------CACGCCTCCTTTCTCTTTCATCTTTCTCATTGACCAATGGGCTTGAAGCATTAAGGCCACGCCCCTATTCTGCATTCTAGT-GTGGCCCTGGTTACGCCTCCTCTGGCTCAGTCACACAGC
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248261 131 -  75399963 TGCTGTCTGGCCACGCCTCCTTTCCCTTTCATCTTTCTCATCGACCAATGGGCTTGAAGCATTAAGGCCACACCCCTATTCTGCATTCTAGT-GCAGCCCTGGTTACGCGGCCTCTGGCTCAGTCACACAGC
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385296 132 +   5228064 TGCTGTCTGGCCACGCCTCCTTTCCCTTTCATCTTTCTCATTGACCAATGGGCTTGAAGCATTAAGGCCATACCCCTATTCTGCATTCTACTGGCAGCCCTGGTTACGCCTCCTCTGGCTCAGTCACACAGC
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37189 131 -     60449 CTCTACCTGGCCACGCCTCTATTCCCTTTTATCTTTCTCATTGACCAATGAGCTTGAAGCATTCAGGTCACACCCCTATTCTGGGTTCTAGT-GAGGCCCTTGTTACGCCTCCTCTGGCTGAATCACACAGC
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10483206 129 -  54856640 CACTGCCTGGATACGCCTCCGTTCCCTATTATCTTTCTCGTTGACCAATGAGCTTCAAGCATTCAGGCCACACCCCTA-TCTGGGTTCTAGT-GAGGCCCTGGTTA-GTCTCCTCTGGCTCAGTCACACAGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       795800 131 -   1271737 CAATGCCTGGCCATGCCTCCATTCCCTTTTATCTTTCTCATTGACCAATGAGCTTGAAGCATTCAGGCCACACCCCTATTCTGGGTTCTAGT-GAGGCCCTGGTTAAGCTGCCTCTGGCTCAGTCAAACAGC
i cebCap1.NW_016107859v1    C 0 I 304
s aotNan1.NW_018512720v1      2607057 130 +   3863790 TGCTGCCTGGCCTTGCCTCTGTTCTCTTTTATCTTTCTCATTGACTAATGGGCTTGAAGCATTCAGGCCACACCCCTATTCTGGGTTCTAGT-GAGG-CCTGGTTACTCCTCCTCTGGCTCAGTCACACAGC
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=48288.000000
s hg38.chr15_KI270851v1_alt    103103 21 +    263054 GACGTAG-AGGTGACTGG----AGGT
s panTro5.chr15               9360125 21 +  83230942 GACGTAG-AGGTGACTGG----AGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73943125 22 -  99763055 TACCTGGTAGGTGACTGG----AGGT
i panPan2.chr15             C 0 I 24
s rheMac8.chr7              164148081 22 - 169600520 TACCTGGTAGGTGACTGG----AGGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170322017 22 - 171882078 TACCTGGTAGGTGACTGG----AGGT
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248392 21 -  75399963 TACGT-GTAGGTGACTGG----AGGT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385428 21 +   5228064 TACGT-GTAGGTGACTGG----AGGT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37320 26 -     60449 TGTGTGGTAGGTGACAGGACGTACGT
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10483335 22 -  54856640 TGCCTGGTAGGTGACAGG----ACGT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2607187 22 +   3863790 TGCATGGTAGGTAACAGG----ACGT
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       795931 304 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=51229.000000
s hg38.chr15_KI270851v1_alt    103124 24 +    263054 ATATACTTGTCCTCACCTGGATCA
s panTro5.chr15               9360146 24 +  83230942 GTATACTTGTCCTCACCTGGATCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25845295 24 +  99763055 GTATACTTGTCCTCACCTGGATCA
i panPan2.chr15             I 152 I 34
s rheMac8.chr7              164148103 24 - 169600520 GTATAGTTGTCCTCGCCTGGATTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170322039 24 - 171882078 GTATAGTTGTCCTTGCCTAGATCG
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248413 24 -  75399963 GTATAGTTGTCCTCGCCTGGATTG
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385449 24 +   5228064 GTATAGATGTCCTCGCCTGGACTG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37346 24 -     60449 ATCTCACTGTCCTCTTCTGTATCA
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10483357 19 -  54856640 AGCTCACTGTCCTC-----TATCA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2607209 24 +   3863790 ATCTTGCTGTCCTCTTCTGGATCA
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       795931 304 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=64480.000000
s hg38.chr15_KI270851v1_alt    103148 34 +    263054 TGCTGATGTGG------------------CCCCAACCCCACCTCCCTACCCA
s panTro5.chr15               9360170 16 +  83230942 TGCTGATGTGG------------------CCCCA------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73943171 34 -  99763055 TGCTGATGTGG------------------CCCCAAGCCCGCCTCCCTCCCCA
i panPan2.chr15             I 24 I 114
s rheMac8.chr7              164148127 34 - 169600520 TGCTGATGTGG------------------CCCCAACCCCACCGCCCTACCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170322063 34 - 171882078 TGCTGATGTGG------------------CCCCAACCCCACCTCCCTACCCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248437 34 -  75399963 TGCTGATGTGG------------------CCCCAACCCTACCTTCCTACCCG
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385473 34 +   5228064 TGCTGATGTGG------------------CCCCAACCCTATCTTCCTACCTG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37370 34 -     60449 CGCTGATGTGG------------------CCTCAACCTCACAACCCTCCCCA
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10483376 52 -  54856640 CGCCGATGTGGCTCCAAGcccacgtccctcttcaaccctacttccctcccca
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2607233 11 +   3863790 CGCTGATGTGG-----------------------------------------
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       795931 304 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=164356.000000
s hg38.chr15_KI270851v1_alt    103182 142 +    263054 TCCCCACCTCCCTACCCAT-----------------------------------CCCCACCTCCCTACCCATCCCCACCTCCCTACCCATCCCCACCTCCCTACCCATCCTATGATGTCCAAAGAAACCAGACAGAGCAAATTGGCCGAGGCCAAGGAACAGGT-AAACGCACCA-------ACA
s panTro5.chr15               9360186 142 +  83230942 TCCCCACCTCCCTATCCAT-----------------------------------CCCCACCTCCCTACCCATCCCCACCTCCCTACCCATCCCCACCTCCCTACCCATCCTATGATGTCCAAAGAAACCCGACAGAGCAAATTGGCCAAGGCCAAGGAACAGGT-AAACGCACCA-------ACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25845353 142 +  99763055 TCCCCACCTCCCTACCCAT-----------------------------------CCCCACCTCCCTACCCATCCCCACCTCCCTACCCATCCCCACCTCCCTACCCATCCTATGATGTCCAAAGAAACCCGACAGAGCAAATTGGCCAAGGCCAAGGAACAGGT-AAACGCACCA-------ACA
i panPan2.chr15             I 34 C 0
s rheMac8.chr7              164148161  78 - 169600520 -----------------------------------------------------------------------------------------------------------TCCCATGATGTCCGAAGAAACCCGACCGATCAAATTGGCCAAGGCCAAGGAAAAGGTAAAACGCACCAGGTTGTGGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170322097  78 - 171882078 -----------------------------------------------------------------------------------------------------------TCCCATGATGTCCAAAGAAACCCGACAGAACAAATTGGCCGAGGCCAAGCAAAAGGTAAAACGCGCCAGGTTGCAGCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248471  78 -  75399963 -----------------------------------------------------------------------------------------------------------TCCGGTGATGTCCAAAGAAACCCGAAAGGGCAAATTGGCTGAGGCCAAGGAAAAGGTAAAATGCACCAGGTTGCAGCA
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385507  78 +   5228064 -----------------------------------------------------------------------------------------------------------TCCGGTGATGTCCAAAGAAACCCGAAAGGGCAAATTGGCTGAGGCCAAGGAAAAGGTAAAATGCACCAGGTTGCCGCA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37404 107 -     60449 ACCGCATGTCCCTCTCCAA-----------------------------------------------------------------------CCCCACTTCCCTCCCCACCCCGAGATGGCCAAAGAAACCAGAGAGAGCAAATGGGCGGAGGCCAAGGAAAAGGTAAAACGCACCAGGT-------
i calJac3.chrUn_GL286477    C 0 I 7
s saiBol1.JH378108           10483428 178 -  54856640 accctacgtctttctccaagcctacgtctctccccaaccctaggtccctcctcaaccccactgccctcccaaccccacttcccttcccagccccacgtccctcgccacaccGAGATGGCCAAAGAAACCAGAAACAGCAAATGGGCGGAGGCCAAGGAAAAGGTAAAACACACCAGGT-------
i saiBol1.JH378108          C 0 I 7
s aotNan1.NW_018512720v1      2607244  94 +   3863790 -------------CCCCAA-----------------------------------------------------------------------CCCCACGTCCCTTCCCATCCTGAGATGGCCAAATAAACCTGAAAAAGTACATGGTCTGAGGCCAAGGAAAAGGTAAAATGCACCAGGT-------
i aotNan1.NW_018512720v1    C 0 I 7
e cebCap1.NW_016107859v1       795931 304 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=143516.000000
s hg38.chr15_KI270851v1_alt    103324 35 +    263054 CCCCAACCCAACCCGAGGCCCCCTCTGACAGCCGA
s panTro5.chr15               9360328 35 +  83230942 CCCCAACCCAACCCGAGGCCCCCTCTGACAGCTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25845495 35 +  99763055 CCCCAACCCAACCCGAGGCCCCCTCTGACAGCTGA
i panPan2.chr15             C 0 I 107
s rheMac8.chr7              164148239 35 - 169600520 CCCCAACCCAGCCCCAGGCGCCCTCTGACAGTCAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170322175 35 - 171882078 CCCCAACCCAGCCCCAGGTCCCCTCTGACAGTTGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248549 35 -  75399963 CCCCAACCCAGCCCCAGGCCCCCTCTGACAGCCAA
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385585 35 +   5228064 CCCCAACCCAGCCCCAGGCCCCCTCTGACAGCCAA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37518 35 -     60449 CCCCAACCCAGCCCCAGGCCCCCTCTGACAGGAGA
i calJac3.chrUn_GL286477    I 7 C 0
s saiBol1.JH378108           10483613 35 -  54856640 CCCCAACCCAGCCCCAGGCCCCCTCTGACAGGAGA
i saiBol1.JH378108          I 7 C 0
s cebCap1.NW_016107859v1       796235 35 -   1271737 CCCCAACCCAGCCCCAGGTCCCCCGTGACAGCAGG
i cebCap1.NW_016107859v1    I 304 C 0
s aotNan1.NW_018512720v1      2607345 35 +   3863790 CGTCAACCCAGTCCCAGGCTCTCTCTGATGGCAGA
i aotNan1.NW_018512720v1    I 7 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=380444.000000
s hg38.chr15_KI270851v1_alt    103359 109 +    263054 ACTGCTGCCAGAGTCTGTGCCACTCCTGAGGGACACCAGGCTGGG--CCCCCCACCCCAGTGCCTCTGGGCTCCCCACACCAAAATCTTGTCAGCCAGCCCAACCCCCTCA
s panTro5.chr15               9360363 107 +  83230942 ACTGCTGCCAGAGTCTGTGCCACTCCTGAGGGACACCAGGCTGGG--CACCCC--CCCAGTGCCTCTGGGCTCCCCACACCAAAATCTTGTCAGCCAGCCCAACCCCCTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73943319 109 -  99763055 ACTGCTGCCAGAGTCCATACCACTCCCGAGGTTCACTGGACTGGG--ACCCCCACACCGGTGCCTCTGGGCTACCCCCACCAAAGTTTTGTCAGTCAGCCCCACCCCTTCA
i panPan2.chr15             I 114 I 16
s rheMac8.chr7              164148274 108 - 169600520 GCTGCTGCCAGAGTCTGTGCCACTGCTGAGGCACACCAGGCTGGGACCCCTCC---CCAGTGCCTCTGGGCTTCCCACACCAAAATCTTGTGAGCCAGCCCAAACCCCTCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170322210 106 - 171882078 ACTGCTGCCAGAGTCTGTGTCACTCCTGAGGCACACTGGGCTGGG--TGCTCC---CAAGTGCCTCTGGGTTCCCCACACCAAAATCTTGTGAGCCGGCCCACTCCCCTCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248584 106 -  75399963 ACTGCTGCCAGAGTCTGTGCCACTCCTGAGGCACACCTGGCTGCC--CCTCCC---CCAGTGCCTCTGGGCTCCCCACACCCAAATCTTGTGAGCCAGCCCAACCCCCTCA
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385620 105 +   5228064 ACTGCTGCCAGAGTCCGTGCCACTCCTGAAGCACACTGGGCTGGG---CCCCC---CCAGTGCCTCTGGACTCACCAAACCAAAATCTTTTCAGCCAGCCCAACCCCCTAA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37553 102 -     60449 A-TGCTGCCAGAGTCTGTGCCACTCCTGAGGCACACCGGGCTGAC-----TCC---CAAGTGCCTCTGGGCTCCCTGCACCAAAATCTTGTCAGCTAGCCCCACCCTGTCA
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10483648 103 -  54856640 ACTGCTGCCGGAGTCTGTGCCACTCCTGAGGCACACCGGGCTGGC-----TCC---CCAGTGCCTCTGGGCTCCCTGCACCAAAATCTTGTCAGCCAGCCCCACCCTGTCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       796270 103 -   1271737 ACTGCTGCCAGAGTCCTTGCCACTCCTGAGCTGCACTGCGCTGGC-----CCC---CCAGTGCCTCTGGCCTTCCTATACCAAAATCTTGTCAGCCAGCCCCACCCCATTA
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2607380 102 +   3863790 ACTGCTGCCAGAGTCTGTACCACTCCTGAGGCACAC-GGGCTGGC-----CCC---CCAGTGCCTCTTGGCTCCCTCCACCAAAATCTTGTCAGTCAGCCCCACCCCATCA
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=313412.000000
s hg38.chr15_KI270851v1_alt    103468 85 +    263054 TAAGTCCTGCCCCTGCTCT-GCCCGGCACACCAGGGTGACTTTGAGCAGGTGACTCCTGGGGCTTCCAACTCCATACTCCGCCCTT
s panTro5.chr15               9360470 85 +  83230942 TAAGTCCTGCCCCTGCTCT-GCCCGGCACACCAGGGTGACTTTGAGCAGGTGACTCCTGGGGCTTCCAACTCCATACTCTGCCCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25845637 85 +  99763055 TAAGTCCTGCCCCTGCTCT-GCCCGGCACACCAGGGTGACTTTGAGCAGGTGACTCCTGGGGCTTCCAACTCCATACTCTGCCCTT
i panPan2.chr15             I 107 I 69
s rheMac8.chr7              164148382 86 - 169600520 GGAGTCCTGCCCCTGCCCTCAATAGTCACCCCAGGGTGACTTTGAGCTGGTGACTCCCAGGGCTTCCCACTCCATACTCTGCCCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170322316 86 - 171882078 TGAGTCCTTCCCCTGCCCTCGCCAGTCACCCCAGGGCGACTTTGAGCTGGTGACTCCTGGGGCTTCCCTCTCCACACTCTGCCCTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248690 86 -  75399963 TGAGTCCTGCCCCTGCCCTCACCAGTCACCCCAGGGCGACTTTGAGCTGGTGACTCCTGGAGCTTCCCACTCCGTACTCCACCCTT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385725 86 +   5228064 TGAGTTCTGCCCCTGCCCTCGCCAGTCACCCCAGGGCGACTTTTTGCTGGTGACTCCTGGAGCTTCCCACTCCGTACTCCACCCTT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37655 86 -     60449 GTGGTCCTGCTCCTGCTCTCACCAGTCACCTCAGGGCGACTTTGAGCCGGTGACTCCTGGGGCTCCCTACTCTGTGCTTTGCCCTC
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10483751 84 -  54856640 GTGGTCCTGCTCCTGCTCTTACCAGTCGCCCCAGGGCGACTTTGAGCCGGCGACTCCCAGGGCTCA--GCACTGTACTCTGCCCTC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       796373 86 -   1271737 GCAGTCCTGCCCCTGCTCTTGCCAGTCGCTCCAGGGTGATTTTGAGCCGGTGACTCCCAGGGCTCCTCGCTCCATACTCTGCCCTC
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2607482 86 +   3863790 GCAGTCCTGCTCCTGCTGTCACCAGTCACCCCAGGGTGACTTTGAGCCTGTGACTCCCAGGGCTCCCCACTCTGTACTCTGCCCTC
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=249127.000000
s hg38.chr15_KI270851v1_alt    103553 75 +    263054 ACCTCCTGCTACCCCAAACCCGACCTCCCTGGGCTCCTTGAGCTCACATCTCCAAGGACCTGGGTGCCCCAGAAC
s panTro5.chr15               9360555 75 +  83230942 ACCTCCTGCTACCCCAAACCCGACCTCCCTGGGCTCCTTGAGCTCACATCTCCAAGGACCTGGGTGCCCCAGAAC
i panTro5.chr15             C 0 C 0
s rheMac8.chr7              164148468 75 - 169600520 ACCTCCTGCTACCCCAAACCTGACTTCCTTGGGCTCTTTGGGCTCACGTCTCGAAGCACCTCGGTGCCCTAGAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170322402 75 - 171882078 ACCTTCTGCTATCCCAAACCCAACCTCCATGGGCTCTTTGGGCTCATGTCTCCAAGGACCTGGGTGCCCCAGAAC
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248776 75 -  75399963 ATCTCCTGCTACCCCAAACCCAAGCACCCTGGGCTTTTTGGGCTCACGTCTCCAAGGACCTGGGTGCCCCAGAAC
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385811 75 +   5228064 ATCTCCTGCTACCCCAAACCTGAGCACCCTAGGCTCTTTGGGCTCACGTCTCCAAGGACCTGGGTGCCCCAGAAC
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37741 75 -     60449 ACCTCCTGCTGCCCCAAGCCCGACCTCCCTGGGTTCTTTGGGCTCGAATCTTCAAGGACCTGGGTCCCCCGGTGC
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10483835 75 -  54856640 ACCTCCTGCTGCCCCAAGCCTGACCTCCCTGGGCTCTTTGGGCTGGCATCTCCAAGGACCTGGGTCCCCCGGTGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       796459 75 -   1271737 ACCTCCTGCTGCCCCAGGGTCAACCTCCCTGGGCTCTTTGGGCTGGCATCTCCAAGGACCTGGGTGCCCCAATGC
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2607568 75 +   3863790 ACCTCCTGCTGCCCCAAGCCTGACCTCCCTGGGCTCTTTGGGCTCACATCTCCAAGGATCTGGGTCCCCCAGCGC
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25845722 69 +  99763055 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=540908.000000
s hg38.chr15_KI270851v1_alt    103628 143 +    263054 CTGCCCTCACCAGTTGCCACAGGGTGACTTTGGGGATGTGACTCCTGGAGCTCCTTGCTCCTTAATT-GGCCCTCACCTCCTGCCGCCCCAAGCCTGACCTCCCGGGGCTCTTTGGGGTCACGTCTCCAAGGACCTGGCTCCCA
s panTro5.chr15               9360630 143 +  83230942 CTGCCCTCACCAGTTGCCACAGGGTGACTTTGGGGATGTGACTCCTGGAGCTCCTTGCTTCTTAATT-GGCCCTCACCTCCTGCCGCCCCAAGCCTGACCTCCCGGGGCTCTTTGGGGTCACGTCTCCAGGGACCTGGGTCCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73943444 144 -  99763055 CTGCCCTCACCAATCACCCCAGGGTGACTTTGGGCAGGTGAATCCTGGGGCTCCCCGCTCCTTTACTGGGCCCTCATCTCCTGCCACCCCAAGCTTGACCTCCCAGGGCTTTTTGGGCTCACATCTCCAAGGACCTGGGTCCCA
i panPan2.chr15             I 16 I 232
s rheMac8.chr7              164148543 143 - 169600520 CTGCCCTCACCGGTTGTCCCCTGGTCACTTTGGACAGGTGACTCCTGGGGCTCCCCGCTCCATACTC-GGCCCTCACCTCCCGCCACCCAAAGCCTGACCTCCCTGGGCTCTTTGGGCTTGCATCTCCAAGGACCTGGGTCCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170322477 143 - 171882078 CTGCCCTCATCAGTTGCCCCAGGGTGACTTTGGGCATGTGACTCCTTGGGCTCCGTGCTCCACATTC-GGCCCTCACCTCCCACCGCCTCAAGCCTGACCTCCCTGGGCTCTTTGGGCTCCTGTCTCCAAGTACCTGGGTCCCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248851 143 -  75399963 CTGCCCTCACCAGTTGCCCCAGGGTGACTTTGGGCAGGTGACTCCTGAGGCTCCCTGCTCCATACTT-GGCCCTCACCTCCCACCGCCCCAAGCCTGACCTCCGTGGGCTCTATGGGCTCGCGCGTCCAAGGACCTGGGTCCCA
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1385886 143 +   5228064 CTCCCCTCAACAGTTGCCGCAGGGTGACTTTGGGCAGGTGACTCCTGGGGCTCCCTGCTCCATACTT-GGCCCTCACGTCCCATTGCCCCAAGCCTGACCTCCCTGGGCTCTGTGGGCTCGTGTCTCCAAGGACCTGGGTCCCA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37816 139 -     60449 CTGCTCTCACCAGTTGCCTCACGGTGACTTTGGGCAGGTGACACTTGGTGCT-CCCACTCCATACTC-AGCCCTCA---CCTGCCACCCTAAGTCTGAGCTCTGTGGGCTGTTTGGGCTTGTGTCTCCAAGGACCTGGGTTCTG
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10483910 142 -  54856640 CTGCTCTCATCAGTTGCCTCAGGGTGACTTTGGGCAGGTGACTCCTGGTGCT-CCCGCTCCGTACTC-AGCCCTCACCTCCTGCCACCCTAAGTCTGAGCTCTGTGGGCTGTTTGGGCTTGTGTCTCCAAGGACCTGGGTTCCG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       796534 143 -   1271737 CTGCCCTCACCAGTTTCCCTAGGGTGACTTTGGGCAGGTGACTCCTGGGGCTCCCCACTCTATACTT-GGCCCTCACCTCCTGCTGCCCCATGCCTGAGTTCCCTGGGCTGTTTGGGCTCGTGTCTCCAAGGACCTGGCTCTTG
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2607643 143 +   3863790 CTGCCCTCACCAGTTGCCCCAGGGTGACTTTGGGCAGGTAACTCCTGGGGCTCCCTGCTCCATACTT-GGCCCTCACCTCCTGCCACCCAAAGCCTGAGCTCCATGGGCTCTTTGGGCTCGTGTCTCCAAGGACCTAGGTTCTG
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=231387.000000
s hg38.chr15_KI270851v1_alt    103771 79 +    263054 ATTTTGTGACC--CC--CTCCCCAGTCTCAAAGCGGCAACTTGGGCATTGCACTCATGTGTCCCCCCCAACCACTCCACCGAG
s panTro5.chr15               9360773 79 +  83230942 ATTTTGTGACC--CC--CTCCCCAGTCTCAAAGCGGCAACTTGGGCATTGCACTCATGTGTCCCCCCCAACCACTCCACCGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25845791 79 +  99763055 ATTTTGTGACC--CC--CTCCCCAGTCTCAAAGCGGCAACTTGGGCATTGCACTCATGTGTCCCCCCCAACCACTCCACCGAG
i panPan2.chr15             I 69 I 1144
s rheMac8.chr7              164148686 80 - 169600520 ATCCTGTGACC--CCCACTCCCCAATCTCAAAGCGGCAACTTGGGCATTGCACTCCTGTGTCCCCCCC-ACCCCTCCACCGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170322620 78 - 171882078 ATCCAGCGACC--CC--CTCCCCAATCTCAAAGTGACAACTTGGGCATTGCTCTCATGTGTCCCCCCT-GCCACTCCACCGAG
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36248994 78 -  75399963 ATCCTGTGACC--CC--CTCCCCAATCTCAAAGTGACAACTTGGGCATTGCACTCTTGTGTCCCCCCG-GCCACTCCACCAAG
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1386029 78 +   5228064 ATCCTGTGACC--CC--CTCCCCAATCTCAAAGTGGCAACTTGGGCATTGCACTCTTGTGTCCCCCCC-GCCACTCCACCAAG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        37955 73 -     60449 GCCCTGCG--C--CC--TGACCACATCTCAAAGTGGCAACTCAGGCATCACACTGATGTGTCCCC----ATGACCCCACAGAG
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10484052 73 -  54856640 GCCCTGTG--C--CC--TCAACCCATCTCAAAGTGGCAACTCGGGCATCACACTGGTGTGTCCCC----CCTACCCCCCGGAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       796677 71 -   1271737 GCCCTGCA--CAACC--T----CCATCTCAAAGTGGCAACTCGGGCATCACACTGATGTGTCCCC----ACCACCCCACAGAG
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2607786 70 +   3863790 GCCCTGTG--C--CC--A---CCCATCTCAAAGTGGCAACTTGGGCATCACACTGACATGTCCCC----TCTACCCCATGGAG
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=4014793.000000
s hg38.chr15_KI270851v1_alt    103850 1025 +    263054 GAGTAGAATGTAGTGATGTCACAGTCCCGCTACAAACTGTCATTACTACCACAAGACCGGCCTTTGGTCT-TAGGACCCAGTCCCCTAAGTGTT-CTTG-CCCACTTCTGTTTCCTCTGGTTGCAGCACAGG-TTTCCAGCTGGAAGGGGAATGGGGACTGTGGGACCTAGAAGAGAGAGGTTTCAGGCTGCCTGACTTCCTTACCACAGACCTTGACAGTGTGAAAAGCCTACACCTCCCCCATGAGCTCAACAC-GTTGACAGTGTC---TCTGGGTGGCAATGGGAGAATG-----GGT-----TTGGTTTGGTTTTCTCCCAGGCTTCTACTCTCCAGAGAGACTTTAAC--ATTTTTTCTCAGTTCTGCACCTCAGATTTGAATTCTCCATTGTTCTGGGACCAGAGTGCCCCTCAGTCACTGGT-TCTGGAGTGAGATCTGCTTATCTTCTGTGGAACAGATCTTGGGAAACTGAACTT---AGCTTGAGTCTTCCTCATCTCATCTCAACCTGGGGTACTTTGAGTgccacaggataaatatggggcatctttctgaagcatcagtttcccttgattctattg------agaggc--aaaacattaAT---------GTACTTAGGGATGAAAGTCACATAGATTTATAAGCGTATACAAGACTTCTCTCTGAAATGAGGCTTGGGTTGTCCTCTTTCTGTTAAATTCCCAGATTTAGCAGAAAGGCTGCCTTCTGCCATGAGGAGACATTGATGTAAAGGTTTGAGAGGTACTGGTGTACTTTTTAACACTAACAGACGTGTGAGGGTGAATAACCCTAAACCACATAGTGCACAGTTCCTGCCTACTTAATATTTGCTTTTCTACCTCTGCCTCTGGTTTTGGTCCCTGGCAGCTGCTGATTTAGGGCAAAATCCCAGAGCTCAGAGTCAGAAGACTGAGTTT--AAGTTC---------------CATTACTGCCTTTTTTTTC-AGCCATGGTATCAATCTCTCTCAGTCACTAAGTGATTGTGACAACATTTCCTACA---GTTGGTGGCATTAAATCAGATGGTCTATAAGAGT
s panTro5.chr15               9360852 1028 +  83230942 GAGTAGAATGTAGTGACGTCACAGTCCCTCTACAAACTGTCATTACTACCACAAGACCGGCCTTTGGTCT-TAGGACCCAGTCCCCTAAGTGTT-CTTG-CCCACTTCTGTTTCCTCTGGTTGCAGCACGGG-TTTCCAGCTGGAAGGGGAATGGGGACTGTGGGACCTAGAAGAGAGAGGTTTCAGGCTGCCTGACTTCCTTACCACAGACCTTGACAGTGTGAAAAGCCTACACCTCCCCCATGAGCTCAACAC-GTTGACAGTGTC---TCTGGGTGGCAATGGGAGAATG-----GGT-----TTGGTTGGGTTTTCTCCCAGGCTTCTACTCTCCAGAGAGACTTTAAC--ATTTTTTCTCAGTTCTGCACCTCAGATTTGAATTCTCCATTGTTCTGGGACCAGAGTGCCCCTCAGTCACTGGT-TCTGGAGTGAGATCTGCTTATCTTCTGTGGAACAGATCTCGGGAAACTGAACTTGACAGCTTGAGTCTTCCTCATCTCATCTCAACCTGGGGTACTTTGAGTgccacaggataaatacggggcatctttctgaagcatcagtttcccttgattctattg------agagac--aaaacattaAT---------GTACTTAGGGATGAAAGTCACATAGATTTATAAGCATATACAAGACTTCTCTCTGAAATGAGGCTTGGGTTGTCCTCTTTCTGTTAAATTCCCAGATTTAGCAGAAAGGCTGCCTTCTGCCATGAGGAGACATTGATGTAAAGGTTTGAGAGGTACTGGTGTACTTTTTAACACTGACAGACGTGTGAGGGTGAATAACCCTAAACCACATAGTGCACAGTTCCTGCCTACTTAATATTTGCTTTTCTACCTCTGCCTCTGGTTTTGGTCCCTGGCAGCTGCTGATTTAGGGCAAAATCCCAGAGCTCAGAGTCAGAAGACTGAGTTT--AAGTTC---------------CATTACTGCCTTTTTTTTC-AGCCATGGTATCAATCTCTCTCAGTCACTAAGTGATTGTGACAACATTTCCTACA---GTTGGTGGCATTAAATCAGATGGTCTATAAGAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73943820 1059 -  99763055 GAGTGGAATGTAGTGATGTCACAGTCCATCCAGTAACTGTCATTACT---GCAAGACTGGCCTTTGATCT-TACGACCCAGTCCCCTAAGCATTGCCAC-CCCATTTCTGGTTCCTCTTGTCACAGCACAAA-TTTCCAGCTGGAAGGGGAATGGAGAT--TGGGACCTAGGAGCAAGAGGTTTCAGGCTGCCTCACTCCCTTAACATAAACATTGACAGCGGGAAAAGCCTACACTTCCCCTGTGAGCTCAAAAC-ATTGACAGTACC---TCTGGATGGCAACTGGAGAATG-----GGTTTGACTTGGTTTGGTTTTCTCCCAGGCTTCTACTTTCCAGAGAGATTTTAACAAATTTTTTGTGAGTTCTCCACCTCACATTCTAATTCTCCATGGTTCTGGGACCAGACTGCCCTTCAGTCAGTGGTCTGTGAAGTGAGATTTGCTCATCTTCTGTGGAATAGATCTTGGGAACCTGAACTTGACAGCTTGAATCTTCCTCATATTATGTAAACCTGGGGTACTTTGAGTgccacaggatacatatgggacatctttctgaagcatcagtttCCATTGATTCTCTTGAGATCAAGAGAA--AAAACATTAAT---------TTACTTAGGGATGACAGTCACATAGGTTTCTAAGAGTATACCAGACTTCTCTCTGAAATGAGGCTTGGGTTGTCCTCTTTCTGATAAATTCCCAGATTTAACAGAAAGGCTGCCTTCTGCCACGAGGACACATTGACATAAAAGTTTGAGAGGTACTGGTGCACTTCTTCACACTAACAGATGTTTGAGGATGTGTGACTCTAAACCACATGGCATACAGTTCCTGCCTACTTAATGTTTGCTTTTCTACCTCTGCCTCTGGTTTTGGTCCCTGGCAGCTGCTGATTCTTGGTAAAACCCCAGAGTTTGGAGTCAGAAGACTGAGTTGCAAAGTTCGTGTGTCGCCTttttcttttcttctttttttttctAGCCATGATATCAATCTCTTTGAGTCACTAAATGATTGTGACAACACCTTGTACAGTTGTTGGTGTCATTAAATCAGATGGTGTATAAGAGT
i panPan2.chr15             I 232 C 0
s rheMac8.chr7              164148766 1030 - 169600520 GAGTGGAATGTAGTGATGTTGCAGTCCTTCTAGGAACTGTCATTACTGCCACGAGACCGGTCTTTGGTCT-TAGGACCCAGTCCCCTAAGTGTT-CTTG-CCCATTTCTGGTTCCTCTGGTTGTAGCACAGG-TTTCCAGCTGGAAAGGGATTGGGGACTGTGGGACCTAGGAGAGAGAGGTTTCAGGCTGCCTTACTTCCTTAACACAGACGCTGACTGTGTGAAAAGCCTACACCTCCCCCATGAGCTCAACAC-ATTGACGGTGT----TCTGGGTGGCAACGGGAGAATG-----GGT-----TTAGTTTGATTTTCTCCCAGGCTTCTACTCTCCAGAGAGACTCGAAC--ATTGTTTCTGAGTTCTCCACCTCAGACTTGAATTCTGCATTGTTCTGGGACCAGAGTGCCCCTCAGTCAGTGGTTGCTGGAGTGAGATCTGCCTATCTTCTGTGGAACAGATCTTGGGAAACTGAACTTGACAGCTTCACTCTTCCTCATCTCATCTCCACCTGGGGTACTTTGAGTgccacaggataaatatggggcatctttctgaagaatcagtttCCTTTGAGTCTACTG------AGAAAC--AAAACATTAAT---------GTACTTAGGGGTGACTGTCACATAAATTTATAAGAATATACAAGACTTCTCTCTGAAATGAGGGTTGGGTTGTCCTCTTTCTGTTAAGTTCCCAGATTTCACAGAAAGGCTGCCTTCTGCCATGAGCATACATTAATATAAACGTTTGAGAGGTAGTGGTGCACTTCTTCACACTAACAGACATGTGAGGATGTATGACTCTAAACCACACGGTGTACAGTGCCTGCCTACGTAATATTTGCTTTTCTGCCTTTGCCTCTGGTTTTGGTCCCTGGCAGCTGCTGACTTGTGGCAAAATCCCAGAGCTCAGAGTCAGAAGACTGAGTTT--CAGTTC---------------CATTAGTGCCTTCTGTTC--AGCCATGGTATCAATCCCTCTCAGTCACTAAGTGATTGTGACAACacttcctacagttgttggtggcattaaatcagatggtgcataagagt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170322698 1007 - 171882078 GAGTGGAATGTAGTGATTTCACAGTCCCCCTAGGAACTATCATTATGGCCACGAGACCTGCCTTTGGTCT-TAGGACCTGGTCCCCTAAGTATT-TTTG-CCCATTTCTGATTCCTCTTGTTGTAGCACAGG-TTTCCAGCTGGATGGGGAATGGGGACCATGGGACCTAGGGGAGAGAGGTTTCAGGCTGCCTTACTTCCTTAACACAGACATTCACAGTGTGAAAAGGCTACACCTCCCCCATCAGTTCAACAC-ATTGACAGTGT-------------CAATGGGAGAACG-----GGT-----TTGGTTTGGTTTTCTCCCAGGCTTCTACTCTCCAGAGAGACTCGAAC--ATTGTTTCTGAGTTCTCCACCTCAGACTTGAATTCTCCATTGTTCTGGGACCAGAGTGCCCCTCAGTCAGTGGTTGCTGGAGTGAGATCTGCCTATCTTCTGTGGAACAGATCTTGGGAAACTGAACTTGACAGCTTGAATCTTCCTCATCTCATCTCCACCTGGGGTACTTTGAGTgccacagggtaaatgtggggcatctttctgaagcatcagtttCCTTTGAGTCTACTG------AGCGAC---AAACATTAAT---------GTACTTAGGGGTGACAGTCACATAGATGTATAAGAGTATACAAGACTTCTCTCTGAAATGAGGGTTGGGTTGTCCTCTTTCTGTTAAGTTCCCAGATTTCACAGAAAGGCTGCCTTCTGCCATGAGGATACATTAATATAAA-GTTTGAGAGGTAGTGGTGCCCTTCTTCACACTAACAGACGTGTGAGGGTGTATGACTCTAAACCA------------TTCCTGCCTACTTAATATTTGCTTTTTTACCTCTGCCTCTGGTTTTCATCCCTGGCAGCTGCTGAGTTGTGGCAAAATCACAGAGCTCAGAGCCAGAAGACTAAGTTT--AAGTTC---------------CATTATTGCCTTTTGTTC--AGCCGTGGTATCAGTCCCTCTCAGTCACTAAGTGATTGTGACAACacttcctacagttgttggtggcattaaatgagatggtgcataagagt
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36249072 1025 -  75399963 GAGTGGAATGTAGTGATGTCACAGTCCCTCTAGAAACTGTCATTACTGCCACCAGACTGGCCTTTGGTCT-TAGGACCCAGTACCCTAAGTGTT-CTTG--TCATTTCTAGTTCCTCTGGTTGCAGCACAGA-TTTCCAGCTGGAAGGGGAATGGGGACTGTGGGACCTAGGAGAGAGAGGTTTCAAGCTGCCTTACTTCCTTAACACACACATTGACAGTGTGAAAAGCCTACACCTCCCCTATGAGCTCAACAC-GTTGACAGTGTC---TCTGGGTGGCAATGGGAGACTG-----GGT-----TTGGTTTGGTTTTCTCCCAGGC-TCTACTCTCTGGAGGAACTTTAAC--ATTGTTTCTGAGTTCTCCACCTCAGATTTGAATTCTCCATTGTTCTGGGACCAGAGGGCCCCTCAGTCAGTAGTTTCTAGAGTGAGATCTGCTTATCTTCTGTGGAACAGATCTTGGGAAACTGAACTTGACAGCTTGAATCTTCCTCATCTCATCTCAACCTGGGGCGCTTTGAGTgtcacaggataaatatggggcatctttctgaagcatcagtttcccttgattctattg------agagag--aaaacattaAT---------GTACTTAGGGATGACAGTCACAGAGATCTAT--GAGTATACAAGACTTGTCCCTGAAATGAGGGTTGGGTTGTCCTCTTTCTGTTAAATTCTCAGATTTAACAGAAAGGCTGTCTTCTGCCATGAGGATACATTGATGTAAAAGCTTGAGAGGTTTTAGTGCACTTCTTCACACTAACAGACGTGTGAGGATATTTGACTGTAAACCACACAATGTACAGTTCCTGCCTGTTTAATATTTGCTTTTCTACCTCTGCCTCTGGTTTTGGTCCCTGGCAGTTGCTGATTTGTGGCAAAATCCTGGAACTCAGAGTCAGAAGACTGTGTTT--AAGTTC---------------CATCATTGCCTTTTCTTC--AGCCGTGGTATCAATCCCTCT--GTCACTAAGTGATTGTGACAACACTTTCTACAGTTGTTGGTGGCATTAAATCGGATGCTCTGTAATAGT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1386107 1022 +   5228064 GAGTGGAATGTAGTGATGTCACAGTCCATCTAGAAACTGTTATTACTGCCACCAGACTGGCCTTTGGTCT-TAGGACCCAGTACCCTAAGTGTT-CTTG-TCCATTTCTGGTTCCTCTGGTTGCAGCACAGG-TTTCCAGCTGGAAGGGGAA--GGGACTGTGGGACCTAGGGGATAGAGGTTTCAGGCTGCCTTACTTCCTTAACACAGACATTGACAGTGTGAAAAGCCTACACCTCCCCCATGAGCTCAACACTTTTGACAGTGTC---TCTGGGTGGCAATGGGAGAATG-----GGT-----TTGGTTTGGTTTTCTCCCAGGCTTCTACTCTCCTG------TTTAAC--ATTGTTTCTGAGTTCCCCACCTCAGATTTGAATTCTCCATTGTTCTGGGACCAGAGGGCCCCTCGGTCAGTAGTTTCTAGAGTGAGATCTGCTTATCTTCTGTGGAACAGATCTTGGGAAACTGAACTTGACAGCTTGAATCTTCCTCATCTCATCTCAACCTGGGGTACTTTGAGTgtcacaggataaatatggggcatctttctgaagcgtcagtttcccttgattctattg------agagac--aaaacattaAT---------GTACTTAGGGATGACAGTCACATAGATCTAT--GAGTATACAAAACTTCTCCCTGAAATGAGGGTTGGGTTGTCCTCTTTCTGTTAAATTCTCAGATTTAATAGAAAGGCTGCCTTCTGCCATGAGGATACATTGATGTAAAAGCTTGAGAGGTTTTGGTGCACTTCTTAACACTAACAGACGTGTGAGGATATATGACTCTAAACCACACAGTGTACAGTTCCTGCCTACTTAATATTTGCCATTCTACCTCTGCCTCTGGTTTTGGTCCctggcagttgctgatttgtggcaaaatcctggaactcaaaatcagaagactgggttt--aagttc---------------cattactgccTTTTTTTC--AGCCGTGGTATCAATCCCTCTCAGTCACTAAGTGATTGTGACAACACTTTCTACAGTTGTTGGTGGCATTAAATCGGATGCTCTATAATAGT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        38028 1031 -     60449 AAGCGGAATGTAGTGACGTCACAGTCCCCC-AGGAACTGTCATTACTGCCCCTAGACTGGCC--TGATCT-TAGGACCCAGTACCCTAACTGTT-CTTGCCCTGTTTTTTGTTCCTCTGGTGGCAGCAGAGA-TTTTCAGCTGGAAGAGAAATGGGGACTGTGGGACCTAGAAGTGAGAGGTTTCAGGCTGCCTCACTCCCTTTACACAGACTTTGACAGTGTGAAAAGCCTGCACCTCCCCCGTGAGCGCAAAAC-GTTGACAATGTC---TCTAAGTGGTGATGGGAGAATGGGTTTGGT-----TTGGTTTTGTTTTCTCCCAGGCTTCTATTCTCCAGAGAGACTTTAAC--ATTTTTTCTGAGTTCTCCACCTCATATTTGAATTCTCCATGGTTCTGGGACCAGAGTGCCCTTCAGTCAGTGGTTTCTGGAGTGAGATCTGCTTCTCTTCTGTGGAACAGATCTTGGGAATCTGAACTTGACAGCTTGAATCTTCCTTATCTCATCTCAACCTGGGGTAATTTTAGTgccacagggtaaatatggggcatctttctgaagcatcagtgtcccttgattctcttg------agagagacaaaacattaGT---------GGACTTAGGGATGACAGTCACATAGATTTCTAAGAGTATACAAGACTTCTCTCTGAAATGAGGCTTGGGTTGTCCTCTTCCCGTTAAATTCTCAGATTTAACAGAAAGGCTGCCTTCTGCCATGAGGATACACTGATGTAAATGTTGGAAAGCTACCGGTGCCCTTCTTAACACTAACAGATGTGTGAGGATGTATGACTCTAAACCACACAGTGTACAGTTCCTGCCTACTTCATACTGACTTTTCTATCACTGCCTCTGGTTTTGGTCCTTGGCAGCTGCTGATTTGTGGCAAAATCCCAGAGGTCGGAGTCAG-AGACTGAGTTT--GAATTC---------------CATTATTGCCTTGGTTTT--AGCCACGGCATCAGTCCCTCTCAGTCAC----TGATTGAGACAACACCTCGTACAGTTGTTGGTGGCATTAAATTCGATGCTCTTATAGAGT
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10484125 1020 -  54856640 AAGTGAAATGTAGTTACGTCACAGTCCCCC-AGGAACTGTCATTACTGCCACTAGACTGGCC--TGATCT-CAGGACCCAGTCCCCTAACTGTT-CTTGCCCTGTTTTTGGTTCCTCTGGTGGCAGCAGAGA-TTTTCAGCTGGAAGAGAAAAGGGGACCGTGGGACCCAGGAGTGAGAGGTTTCAGGCTGCCTTACTCCTTTAACACAGACGTTGACAGTGTGAACAGCCTACACCTCCCCTGTGAGCTCAAAAC-GTTGACAGTGTCTCTTCTGAGTGGTGATG-------------GGT-----TTGGTTTGGTTTTCTCCCAGGCTTCTATTCTCCAGAGAGACTTAAAC--ATTTTTTCTGTGTTCTCCACCTCATATTTGAATTCTCCATGGTTCTGGGGCCAGAGTGCCCTTCAGTCAGTGGTTTCTGGAGCGAGATCTGCTTCCCTTCTGTGGAACAGATCTTGGGAATCTGAACTTGACAGCTTGAATCTTCCTCATCTCATCTCAACCTGGGGTACCTTGAGTgccacagggtaaatatggggcatctttctgaagcattaGCAGCCCTTCATTCTCTTG------AGAGACACAAAACATTA-T---------GGACTTAGGGATGAGAGTCACATAGATTTCTAAGGGTATCCCAGACTTTGCTTTGAAATGAGGCTTGGGTTGTCGTCTT-CTGTTAAATTCTCAGATTTAACAGAAAGGCTGCCTTCTGCCATGAGAATACAGTGATGTAAAAGTTGGAGAGGAACCGGTGCCCTTCTTAACACTAACAGACGTGTGAGGAAGTATGACTCTAAACCACACAGTGTACCGTTCCTGCCTACTTCGTATTGATTTTTCTACCTCTGCCTCTGGTTTTGGTCCTTGGCAGCTGCTGATTTGTGGCAAAATCCCAGAGGTCGGAGTCAGAAGACTGAGTTT--AAGCTC---------------CATTACTGCCTTGGTTTT--AGCCATGGCATCAGTCCCTCTCAGTCAC----TGATTGAGACAACACCCCGTACAGTTGTTGGTGGCATGGAATCAGATGCTCTATAAGAGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       796748  996 -   1271737 GAGTGGGATGTAGTGATGTCACAGTCCCCCTAGGAACTGTCATTACTGCCACTAGACTGGCC--TGTGATGTAAGACCCAG---------TGTT-CTGGCCCTATTTCTGGTTCCTCTGGTTGCAGCACAGA-TTTTCAGCTGAAAGAGAAATGGGGATCGTTGGACCTAGGAGTGA-AGGTTTCAGGCTGCCTTACTCTTTTAACACAGACATTGACAGTGTGAAAAGCCTACACCTCCCCCATGAGCTCAAAAT-GTTGACACTGTC---CCTGAGTGGCAATGGGAGAACT-----GGT-----TTGGTTTGGTTTTCTCCTAGGCTTCTACTCTCCAGAGAGACTTTAAC--GTTTTTTCTGAGTT---CACCTCATATTTGAATTCTCCATGGTTCTGGGGCCAGAGTGCCCTTCAGTCAGTGGTTTCTGGAGTGAGATCTGCTTCTCTTCTGT-GAACAGATCTTGGGAAACTGAAGTTGACAGCTTGAATCTTC-----CTCATCTCAACCT--------TTGAGTgccacagggtaaatatggggcatctttctgaagcatcagtttcccttgattctcttg------agagac-----acattaAT---------GGACTTAGGGATGAGAGTCACATAGATTTCTAAGAGTATACCAGACTTCACTCTGAAATGAGGCTTGGGTTGTCTTCTT-CTGTTAAATTCTCAGATTTAACAGAAAGGCTGCCTTCTGCCATGAGGATACAGTGACGTAAAAGTTGGAGAGGTACCGGTGCTGTTCTTAACACTAACAGACGTGTGAGGGTGTATGACTCTAAACCACACAGTGTACCGTTCCTGCCTACGTCATATTTGCCTTTCTACCTCTGCCTCTGGTTTTGGTTTGTGGCAGCTGCTGATTTGTGGCAAAATGCCAGAGGTCGGAGTCAGAAGACTGAGTTT--AAGTTC---------------CATTATTGCCTTGGTTTC--AGCCACGGGATCAGTCCCTCTCAGTCAC----TGATTGAGACAACacttcatacagttgttggtggcattaaatcagatgctctataagatt
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2607856 1036 +   3863790 GAGTGGAATGTAGTGATGTCGCAGTCCCCC-AGGAACCGTCATTACTGCCACTAGACTGGCCTTTGATCT-TAGGATCCAGTCCACTAACTGTT-CTCG-CCTGTTTTTGGTTCCTCTGGTGGCGGCACAGATTTTTCAGCTGGAAGAGAAATGGGGACAGTGGGACCTAGGAGTGAGAGGTTTCAGGCTGCCTTACTCCCTTAACACAGACATTGACAGTGTGAAAAGTCTACACCTCCCCCATGAGCTCAAAAC-ATTGACAGTGTC---TCTGAGTGGTGATGGGAAAAGG-----GGT-----TTGGTTTGGTTTTCTCCCAGGCTTCTATTCTCGAGAGAGACTTTAAC--ATTTTTTCCAAGTTCTCCACCTCATATTTGAATTCTCCATGGTTCTGGGGCCAGAGTGCCCTTCAGTCAGTGGTTTCTGGAGTGAGATCTGCTTCTCTTCTGTGGAACAGATCTTGAGAAACTGAAAGTGACAGCTTGAATCTTCCTCATCTCATCTCAACCTGGGGTACTTTGAGTGCCGCAGGGTAAATATGGGGCATCTTTCTAAGGGATCAGTTTCCCTTGATTCTCTTG------AGAGAGACAAAACATTAATGTACTTAGGGTACTTAGGGATGACATTCACATAGATTTCTAAGGGTATAGCAGACTTCTCTCTGAAATGAGGCTTGGGTTGTCCTCTTTCTGTTAAATTCTCAGATTTAACAGAAAGGCTGCCTTCTGCCATGAGGATACACTGATATAAAAGTTGGAGAGGTACCGGTGCCCTTCTTAACACTAACAGACGTGTGAGGATGTATGACTCTAAACCACACAGTGTACAGTTCCTGCCTACTTCATAGTGACTTTTCTACCTCTGCCTCTGGTTTTGGTCCCTGGCAGCTGCTGATTCATGGCAAAATCT--GAGGTTGGAGTCAGAAGACTGAGTTT--AAGTTC---------------CATTATTGCCTTGGTTTT--AGCCACGGTATCAGTCCCTTTCAGTCAC----CGATTGAGACAACACCTCGTACAGCTGTTGGTGGCATTAAATCAGATGCTCTATAAGAGT
i aotNan1.NW_018512720v1    C 0 I 612
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228  470 +    551209 I
e manLeu1.NW_012101289v1       112677    8 +    138091 I
e cerAty1.NW_012002601v1      1549083    6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=16380.000000
s hg38.chr15_KI270851v1_alt    104875 4 +    263054 ATTT
s panTro5.chr15               9361880 4 +  83230942 ATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73944879 4 -  99763055 ATTT
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164149796 4 - 169600520 attt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170323705 4 - 171882078 attt
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36250097 4 -  75399963 ATTT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1387129 4 +   5228064 ATTT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        39059 4 -     60449 ATTT
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10485145 4 -  54856640 ATTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       797744 4 -   1271737 attt
i cebCap1.NW_016107859v1    C 0 I 310
e aotNan1.NW_018512720v1      2608892 612 +   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677 8 +    138091 I
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=8059.000000
s hg38.chr15_KI270851v1_alt    104879 5 +    263054 AGTAT
s panTro5.chr15               9361884 5 +  83230942 AGTAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73944883 5 -  99763055 TATAA
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164149800 5 - 169600520 tgtag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170323709 5 - 171882078 tgtat
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36250101 5 -  75399963 TGTAT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1387133 5 +   5228064 TGTAT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        39063 5 -     60449 TGTAA
i calJac3.chrUn_GL286477    C 0 I 605
s saiBol1.JH378108           10485149 5 -  54856640 TGTAA
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018512720v1      2608892 612 +   3863790 I
e cebCap1.NW_016107859v1       797748 310 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677 8 +    138091 I
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=38145.000000
s hg38.chr15_KI270851v1_alt    104884 12 +    263054 AAACTGTAAAGC
s panTro5.chr15               9361889 12 +  83230942 AAACTGTAAAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73944888 12 -  99763055 AAACTGTAAAGG
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164149805 12 - 169600520 aaactgtaaagc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170323714 12 - 171882078 aaactgtaatgc
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36250106 12 -  75399963 AAACCGTAAAGC
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1387138 12 +   5228064 AAACTGTAAAGC
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        39673 12 -     60449 aaCCTGTAAAGT
i calJac3.chrUn_GL286477    I 605 C 0
s saiBol1.JH378108           10485154 12 -  54856640 AACCTGTGAAGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       798058 12 -   1271737 aaaCTGTGAAGT
i cebCap1.NW_016107859v1    I 310 C 0
e aotNan1.NW_018512720v1      2608892 612 +   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=190112.000000
s hg38.chr15_KI270851v1_alt    104896 54 +    263054 AGGATGTGACTGTAGGAGCTTGTAGTTCTCATGAGTATCACTGCTCTTCCTTTC
s panTro5.chr15               9361901 54 +  83230942 AGGATGTGACTGTAGGAGCTTGTAGTTCTCATGAGTATCACTGCTCTTCCTTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73944900 54 -  99763055 AGGATGTGGCTGCAGGGGCTGATAGTTCTCATGAGTATTACTGCTCTTGTTTCT
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164149817 54 - 169600520 aggatgtgactgtaggagttTCTAGTTCTCATGAGTATCACTGCTCTTCCTTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170323726 54 - 171882078 gggatgtgactgtaggagcttgtAGTTCTCATGAGTATCACTGCTCTTCCTTTC
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36250118 54 -  75399963 CGGATGTGACTGTAGGAGCTTGTAGTGCTCATGAGTATCACTGCTCTTCCTTTA
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1387150 54 +   5228064 AGGATGTGACTGTAGGAGCTTGTAGTTCTCATGATTATCACTGCTCTTCCTTTA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        39685 54 -     60449 AGGATGTGACTGTAGGGGCTTGTAGTTCTCATAAGTATCACTGCTCTTGTTTTC
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10485166 33 -  54856640 AGGggctgggcatggtggctcata---------------------cctgtaatc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       798070 54 -   1271737 AGGATGTGACCGTAGGGGCTTGTAGTTCTCATGAGTATCACTGCTCTTCTTTTC
i cebCap1.NW_016107859v1    C 0 I 73
s aotNan1.NW_018512720v1      2609504 54 +   3863790 AGGATGTGACTATAGGGGCTTGTAGTTCTCATGAGTATCACTGCTCTTCTTTTC
i aotNan1.NW_018512720v1    I 612 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=101900.000000
s hg38.chr15_KI270851v1_alt    104950 41 +    263054 CACAGT----TGACAGACCATCATCCCCAGA-CCAACCCTAGTGTT
s panTro5.chr15               9361955 41 +  83230942 CACAGT----TGACAGACCATCATCCCCAGA-CCAACCCTAGTGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73944954 41 -  99763055 GACAGT----TAAAAGAATATTGGCAGAGAA-ACAGCCCTGGTGTT
i panPan2.chr15             C 0 I 30
s rheMac8.chr7              164149871 42 - 169600520 CACAGT----TGAAAGACTACCATCCCCAGGCCCAACCCTAGTGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170323780 41 - 171882078 CACAGT----TGAGAGACTACCATCCCCAGG-CCAACCCTAGTGTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36250172 41 -  75399963 CACAGT----TGAGAGACTATCATCCCCAGA-CCAACCCTAGTGTT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1387204 41 +   5228064 CACAGT----TGAGAGACTGTCATCCCCAGA-CCAACCCTAGTGTT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        39739 40 -     60449 -ACAGC----TGAGAGAATATCATCAGCACA-ACAGCCCTGGTGTT
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10485199 44 -  54856640 -ccagcactttgggagAATATCATCATCACA-ACCGCCCTGGTATT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2609558 40 +   3863790 -ACAGC----TGAGAGAATATCATCAGCACA-ACAGCCCTGGTGTT
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       798124 73 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=89090.000000
s hg38.chr15_KI270851v1_alt    104991 35 +    263054 GGTACAGCAGCAAGCGACACCAAAAAGAAGAAAAT
s panTro5.chr15               9361996 35 +  83230942 GGTACAGCAGCAAGCGACACCAAAAAGAAGAAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25847014 35 +  99763055 GGTACAGCAGCAAGCGACACCAAAAAGAAGAAAAT
i panPan2.chr15             I 1144 C 0
s rheMac8.chr7              164149913 35 - 169600520 GGTACAGAAGCAAGCGACACCAAAAAGAAGAACAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170323821 35 - 171882078 GGTACAGGAGCAAGCGACACCAAAACGAAGAACAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36250213 35 -  75399963 GGTAAACGAGCAACCGACACCAAAAAGAAGAAAAC
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1387245 35 +   5228064 GGTAAAGGAGCAACCGACACCAAAAAGAAGAAAAT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        39779 32 -     60449 AGTACAGGAGCAACCGACACCAAAAGGGAAAT---
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10485243 32 -  54856640 GGGACAGGAGTAACTGACACCAATAGGCAAAT---
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2609598 32 +   3863790 GGTACAGGAGCAACCGACACTAAAAGGCAAAC---
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       798124 73 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=20020.000000
s hg38.chr15_KI270851v1_alt    105026 4 +    263054 AAAT
s panTro5.chr15               9362031 4 +  83230942 AAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25847049 4 +  99763055 AAAT
i panPan2.chr15             C 0 I 343
s rheMac8.chr7              164149948 4 - 169600520 AAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170323856 4 - 171882078 AAAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36250248 4 -  75399963 AAAT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1387280 4 +   5228064 AAAT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        39811 4 -     60449 AAAT
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10485275 4 -  54856640 AAAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       798197 4 -   1271737 AAAT
i cebCap1.NW_016107859v1    I 73 C 0
s aotNan1.NW_018512720v1      2609630 4 +   3863790 AAAT
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677 8 +    138091 I
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=512635.000000
s hg38.chr15_KI270851v1_alt    105030 122 +    263054 AATGGCACTAACCCTGAGACAACCACTTCTGGTGGTTGCCACTCGCCTGAGGATGTGAGTCTTGGCTGGCCGGGCTCCTGGGGACAGAGGGCCCAAGGGGTGGTGGAGGGTAATTGTTAAGA
s panTro5.chr15               9362035 122 +  83230942 AATGGCACTAACCCTGAGACAACCACTTCTGGTGGTTGCCACTCACCTGAGGATGTGAGTCTTGGCTGGCCAGGCTCCTGGGGACAGAGGGCCCAAGGGGTGGTGGAGGGTAATTGTTAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73945025 122 -  99763055 AATGGCAGCATCCATGAGACAGCCACTTCTGGTGGTTGCCACTCACCTGGAGATGTGAGTCTTGGCTGACTAGGTTCCTGGGGACAGGGGACCCAAGGGGcagtagagggtaattgttaaga
i panPan2.chr15             I 30 C 0
s rheMac8.chr7              164149952 122 - 169600520 AATGGTGCTAACCCTGACACAACCACTTCTGGTGGTTGCCACTCACCTGAGGATGTGAGTCTTGGCTGGCCAGGCTCCTGGGGACAGAGGGCCCAAGGGGTGGTGGAGGGTAACTGTTAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170323860 121 - 171882078 AATGGTGCTAACCCTGAGACAACCACTTCTGATGGTTGCCACTCACCTGAGGATGTGAGTCTTGGCTGG-GAGGCTCCTGGGGACAGAGGGCCCAAGGGGTGGTGGAGGGTAATTGTTAAGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36250252 122 -  75399963 AATGGCACTAACCCTGGGACAACCACTTCTGGTGGTTGCCACTCACCTGAGGATGTGGGTCTTGGCTGGCCAGGCTCCTAGGGACAGAGGGCCCAACGGGTGGTGGAGGGTAATTGTTAAGA
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1387284 122 +   5228064 AATGGCACTAACCCTGAGACAACTACTTCTGGTGGTTGCCACTCACCTGAGGATGTGGGTCTTGGCTGGCCAGGCTTCTGGGGACAGAGGGCCCAATGGGTGGTGGAGGGTAATTGTTAAGA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        39815 122 -     60449 AATGGCAGCAACCCTGAGACAACCACTTCTGCTGGCTGCCACTCACCTGAGGATGTGAGTCTTGGCTGGCCAGGCTTCTGGGGTCAGAGGGCCCAGGGGACAGTAGAGGGTAACAGTTAAGA
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10485279 122 -  54856640 AACGGCAGTGACCCTGAGACAAGAACTTCTGCTGGCTGCCACTCACCTGAGGATGTGAGTCTTGGCTGGCCAGGCTTCTGGAGACAGAGGGCCCAAGGGACAGTAGAGGGTAACTGTTAAGA
i saiBol1.JH378108          C 0 I 450
s cebCap1.NW_016107859v1       798201 119 -   1271737 AATGGCAGTGACCCTGAGAC---CACTTCTGCTGGCTGCCACTCACCTGACGATGTGAGTCTTGGCTGGCCAGGCTCCAGCGGACAGAGGGCCCAAGGGACAGTAGAGGGCAACTGTGAAGA
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2609634 120 +   3863790 AATGGCAGTAACCCTGAGACAACCACTTCCACTGGTTGCCACTCACTGGAGGA--TGAGTCTTGGCTGGCCAGGTTTCTGGGGACACAGGGCCCAAGGGacagtagagcgtaattgttaaga
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=33345.000000
s hg38.chr15_KI270851v1_alt    105152 9 +    263054 TTGTGGAAG
s panTro5.chr15               9362157 9 +  83230942 TTGTGGAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73945147 9 -  99763055 ttgtggatg
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164150074 9 - 169600520 TTGTGGAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170323981 9 - 171882078 TTGTGGAAG
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36250374 9 -  75399963 TTCTGAAAG
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1387406 9 +   5228064 TTGTGGAAG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        39937 9 -     60449 TTgtggaag
i calJac3.chrUn_GL286477    C 0 C 0
s cebCap1.NW_016107859v1       798320 9 -   1271737 TTgtggaag
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2609754 9 +   3863790 ttgtggaag
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677 8 +    138091 I
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10485401 450 -  54856640 I

a score=797394.000000
s hg38.chr15_KI270851v1_alt    105161 212 +    263054 AACTGCCAGGTACTGGCTAAGAATTctgggtttgaatcctacccctccatctgctagggatatgatttagcgcaaattgcttgagctctttgggc--ctctcttttcacatccgtaaaatacgagtggtattgttttccttacgtttgtgaagtttaaatgagatTTGTCATTGT-GTTTTTATGTTAATCCCTCGTCCAGGACCTGCTGTAAAC---
s panTro5.chr15               9362166 212 +  83230942 AACTGCCAGGTACTGGTTAAGAATTctgggtttgaatcctacccctccatctgctagggatatgatttagcgcaaattgcttgagctctttgggc--ctctcttttcacatctgtaaaatacgagtggtattgttttccttacatttgtgaagtttaaatgagatTTGTCATTGT-GTTTTTATGTTAATCCCTCGTCCAGGGCCTGCTGTAAAC---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73945156 212 -  99763055 gactgttgggtacctgtgaagaattctgggtttgaatcctgcctctttgtctgctagggatatgatttagggcaagttgcttggcctcattgggc--ctctgttttcacatctgtataatagaggtgatattgtttcacttccatttgtgaagtttaaatgagatTTGTTATTGT-TGTTTTATGTTAATCCCTAGTACATGGCCTGCTGTAAAC---
i panPan2.chr15             C 0 M 846
s rheMac8.chr7              164150083 209 - 169600520 AACTCCCAGGCACTGCTTAAGAATTctgggtttgaat----cctctccatctgctggggatatgatagagggcaaattccttgagctctttgggc--ctctcttttcacatctgtaaaataggagtggtttggttttacctacattggtgaagtttaaatgagatTTATCATTGTTGTTTTTATGTGAATCCCTAGTCCACGGCCTGCTGTAAAC---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170323990 209 - 171882078 AACTCCCAGGCACTGCTTAAGAATTctgggtttgaat----cctctccatctgctggggatatgatttaggacaaattgcttaagctctttgggc--ttcatttttcacatctgtaaaataggagtggtgtggttttacttacatttgtgaagtttaaatgagATTCGTCATTGCAGTTTTTATGTTAATCCCTAGTCCACGGCCTGCTGTAAAC---
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36250383 213 -  75399963 AACTGCCAGGTACTGCTTAAGAATTctgggttcgaatcttacctctccatctgctagggatatgatttagggcaaattgcttgagccctttgggc--ctgtcttttcacttctgtaaaataggagtagtattgttttacttacatttgtgaagtttaaatgagatTTGTCATTGTTGTTTTTATGTTAATCCCCAGTCCAGGGCCTGCTGTAAAC---
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1387415 213 +   5228064 AACTGCCAGGTACTGCTTAAGAATTctgggtttgaatcctacctctccatctgctagggatatgatttagggcaaattgcttgagccctttgggc--ctctcttttcacatctgtaaagtaggagtggtattgttttacttacatttgtgaagtttaaatgagatTTGTCATTGTTGTTTTTATGTTAATCTCTAGTCCAGGGCCTGCTGTAAAC---
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        39946 214 -     60449 aattgccgggtattggttaagaatcctgggtttgaatgctctctctccatctgctaagggtatgatttagggctaattgcttgagctctatgggc----ctgttttcacatctgtaaaataggggtggtattgttttacttacatttgtgacatttcaatgagatTTGCTCTTGTAGTTTTTATGTTGATCCCTAGTACAGGGCCTGTTGTGAACACC
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10485851 215 -  54856640 aactgctgggttctggtttagaatcctgggtttaaagcctattgctagatctgctagggaaatgatttagggcaaattgcttgagctctttgggcctctctcttttcatgtctgtaaaataggggtggtattgttttacttacatttgtgaagtttcaatgagatTTGTTCTT---GTTTTTATGTTAATCCCTAGTACAGGGCCTGCTGTGAAcatc
i saiBol1.JH378108          I 450 C 0
s cebCap1.NW_016107859v1       798329 213 -   1271737 aactgccgggtactggttaagaatcctgggtttaaagcctattgctagatctgctagggatatgatttagggcaaattgcttgagctctatgggc--ctctgttttcacatctgtaaaataggggtggtattgttttaattacctttgtgaagtttcaatgagatCTGCTCTT---GTTTTTTTGTTAATCCCTAGTACAGGGCCTGCTGTGAAcacc
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2609763 213 +   3863790 aactgctgggtactagttaaggatcctgggtttgaatgtgctatctccatctgctaaaggtatgatttagagccaactgcttgagctctttgggc--ctctcttttcacatctgtaaaataggggtggtattgttttacttacatttgtgaagtttcaatgagATTTGTTATTGTTGTTTTTATGTTAATCCCTAGTACAGGGCCTGCTGTAAA---T
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=190559.000000
s hg38.chr15_KI270851v1_alt    105373 48 +    263054 TCTCCTTCTTGGGCTTGCGTTTCCT---GAGGTAGAGTTAGAGAGTATCAG
s panTro5.chr15               9362378 48 +  83230942 TCTCCTTCTTGGGCTTGCATTTCCT---GAGGTAGAGTTAGAGAGTATCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25847396 48 +  99763055 TCTCCTTCTTGGGCTTGCATTTCCT---GAGGTAGAGTTAGAGAGTATCAG
i panPan2.chr15             I 343 C 0
s rheMac8.chr7              164150292 48 - 169600520 TCTCCTTCTCGGGCTTGCGTTTCCT---GAGGTAGAGTTAGAGAGTATCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170324199 48 - 171882078 TCTCCTTCTCGGGCTTGCATTTCCT---GAGGCAGAGTTAGAGAGTATCAG
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36250596 46 -  75399963 TCTCCTTCTTGGGCTTGCATTTCCT---GAAGT--AGTTAGAGAGTATCAG
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1387628 46 +   5228064 TCTCCTTCTTGGGCTTGCATTTCCT---GAAGT--AGTTAGAGAGTATCAG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        40160 51 -     60449 TCTCCTCCTTGGGCTTGTGTTTCCCGAGGAGGTGGAGTTAGAGAGTATCAT
i calJac3.chrUn_GL286477    C 0 I 154
s saiBol1.JH378108           10486066 51 -  54856640 tctcctccttgggcttgtgtttcctgaggaggtggagttatagagtatcac
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       798542 51 -   1271737 tctcctccttgggcttgtgtttcctgaggaggtggagttagagagtatcac
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2609976 50 +   3863790 TCTCCT-CTTGCGCTTGTGTTTCTTGAGGAGGTGGAGTTAGAGAGTATCAC
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=2299046.000000
s hg38.chr15_KI270851v1_alt    105421 564 +    263054 AGGTTTCTGTTAGCTCTGAGAGCCCGAGAGTTAAAGGcccactagaatggaaacctcggggccaagggctcctgtctgccttttctgacctctattcccgctgtgaagaaccgtccctggcccgtatgtgc----tcaacgtttgctgagtgaatgCACCTTTCTAAATCACAAGCTGGCAGAAGGGTGGGCTTTTCTCGCACTCCACCTCTGAAGGTTTCTGTTACTATCTTTTCAAGAGAATCTAGTTTCAGACTTTGAGTTCTGTGGCTGTGGGCAAAAACCAA-AAAGACCCAAATCCTTCTTCTTTGGGAG-TTGAGGAGAGTTGACCAGTTCATGTTCCCATTGGGTCTGAGAACTGTGCCTTTTAAATCCATTCCTGGCCCCTGCCTATCGCTTCCTGGCCTGGGGAATAGAGTCAA-GGGGGCCACCCTCAGTCACCTTCCTTTGACTCTCCCCACAGAAACAATAGAACCGAGCTCAGCTGGAAGAAGTAGTGTGATTTCTTTGCTCA----CGACATGACCGCTGGGTTT--GGGG-GCACTCAGATGTAGAGGCCCCAGGCTCATCT
s panTro5.chr15               9362426 564 +  83230942 AGGTTTCTGTTAGCTCTGAGAGTCCGAGAGTTAAAGGcccactagaatggaaacctcggggccaagggctcctgtctgccttttctgacctctattcccgctgtgaagaagcgtccctggcctgtatgtgc----tcaacgtttgctgaatgaatgCACCTTTCTAAATCACAAGCTGGCAGAAGGGTGGGCTTTTCTCACACTCCACCTCTGAAGGTTTCTCTTACTGTCTTTTCAAGAGAATCTAGTTTCAGACTTTGAGTTCTGTGGCTGTGGGCAAAAACCAA-AAAGACCCAAATCCTTCTTCTTTGGGAG-TTGAGGAGAGTTGACCAGTTCATGTTCCCATTGGGTCTGAGAACTGCGCCTTTTAAATCCATTCCTGGCCCCTGCCTATCGCTTCCTGGCCTGGGGAATAGAGTCAA-GGGAGCCACCCTCAGTCACCTTCCTTTGACTCTCCCCACAGAAACAACAGAACCGAGCTCAGCTGGAAGAAGTAATGTGATTTCTTTGCTCA----CGACATGACCGCTGGGTTT--GGGG-GCACTCAGATGTAGAGACCCCAGGCTCATCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25847444 564 +  99763055 AGGTTTCTGTTAGCTCTGAGAGTCCGAGAGTTAAAGGcccactagaatggaaacctcggggccaagggctcctgtctgccttttctgacctctattcccgctgtgaagaagcgtccctggcccgtatgtgc----tcaacgtttgctgaatgaatgCACCTTTCTAAATCACAAGCTGGCAGAAGGGTGGGCTTTTCTCACACTCCACCTCTGAAGGTTTCTCTTACTGTCTTTTCAAGAGAATCTAGTTTCAGACTTTGAGTTCTGTGGCTGTGGGCAAAAACCAA-AAAGACCCAAATCCTTCTTCTTTGGGAG-TTGAGGAGAGTTGACCAGTTCATGTTCCCATTGGGTCTGAGAACTGTGCCTTTTAAATCCATTCCTGGCCCCTGCCTATCGCTTCCTGGCCTGGGGAATAGAGTCAA-GGGAGCCACCCTCAGTCACCTTCCTTTGACTCTCCCCACAGAAACAACAGAACCGAGCTCAGCTGGAAGAAGTAATGTGATTTCTTTGCTCA----CGACATGACCGCTGGGTTT--GGGG-GCACTCAGATGTAGAGACCCCAGGCTCATCT
i panPan2.chr15             C 0 I 341
s rheMac8.chr7              164150340 569 - 169600520 AGGTGTCTGTTAGCTCTGAGAGTCCGAGAGTTAAAGGcccactagaatggaaacctcgggaccgagggttcctatctgccttttccgtcctatatctgcgctgtgaagaaccgtccctggcccgtatgtgctcagtcaatgtttgttgaatgaatgCACCTTTCTAAATCACAAGCTGGCAGAAGCGTGGGCTCTTCTCACACTCCATCTCTGAAGGTTTCTCTGACTGTCTTTTTGAGAGAATCTAGTTTCAGACTTTGAGTTCTGTGGCTGTGGGCACAAACCAACAAAGACTCAAGTCCTTTTACTTTGGGAG-TTGAGGAGAGTTTACCAGTTCGTGTTCCCATTGGGTCTGAGAAC--TACCTTTAAAATCCATCCCTGGCCCCTGCCTACTGCTTCCTGGCCTGGGGAATAGAGTTGA-AGGGGCCACCCTCAGTCACCTTCCTTTGACTCTCCCCACAGAAACAACAGAACCGAGCCCAGCTGGAAGAAGTAACGTGATTTCTTTGTTTGC---TCACATGACTGCTGGGTTT-GGAGG-ACACTCAGCCATAGAGTCCCCAGACTCCTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170324247 571 - 171882078 AGGTTTCTGTTAGCTCTGAGAGTCTGAGAATTAAAGGcccactagaatggaaaccttgggactgaggactcctgtctgccttttccgtcctatactcccgttgtcaagaaccgtccctggcccgtatgtgctcagtcagtgtttgttgaatgaatgcatCTTTCTAAATCACAAGCTGGCAGAAGGGTGGCCTCTTCTCACACTCCATCTCTGAAGGTTTCTGTGACTGTCTTTTTGAGAGAATCTAGTTTCAGACTTTCAGTTCTGTGACTGTGGGCAAAAACCAACAAAGACCAAAATCCTTTATCTTTGGGAG-TTGAGGAGAGTTTATCAGCTCGTGTTCCCATTGAGTCTGAGAACTTTGCCTTTAAAATCCATCCCTGGCCCCTGCCTACCACTTCCTGACCTGGGGAATAGAGTCGA-AGGGGCCACCCTCAGTCACCTTCCTTTGACTCTCCCCACAGAAACAACAGAACCGAGCTCAGCTGGAAGAAGTAACGTGATTTCTTTGTTTGC---TCACATGACTGCTGGGTTT-GGAGG-ACACTCAGCCGTAGAGGCCCCAGTCTCGTCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36250642 571 -  75399963 AGGTTTCTGTTAGCTCTGAGAGTCTGAGAGTTGAAGGcccactagaatggaaacctcggggccaagggctcctgtctgccttttccgtcctatatccgcgctgtgaagaaccgtccctggcccgtatgtgctcactcaatgtttgttgaatgaatgCACCTTTCTAAATCACAAGCTGGCAGAAGGGTGGGCTTTTCTCACACTCCATCTCTGAAGGTTTATGTTACTGTCTTTTTGAGAGAATCTGGTTTCACACTTTCAGTTCTGTGGCTATGGGCAAAAACCAACAAAGACCCAAATCCTTTTTCTTTGGGAG-TTGAGGAGAGTTTACCAGTTCGTGTTCCCATTGGGTCTGAGAACTTCACCTTTAAAATCCATTCCTGGCCCCTGCCTATCGCTTCCTGGCCTGGGGAATAGAGTCAA-GGGGGCCACCCTCAGTCACCTTCCTTTGACTCTCCCCACAGAAACAACAGAACCGAGCTCAGCTGGAAGAAGTAACGTGATTTGTTTGCTCA----TGACATGACTGCTGGGTTTGGGGGG-ACACTCAGATGTAGAGGCCCCAGTCTCATCC
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1387674 575 +   5228064 AGGTTTCTGTTAGCGCTGAGAGTCTGAGAGTTGAAGGcccactagaatggaaacctctgggccaagggctcctgtctgccttttccatcctatatccttgctgtgaagaaccatccctggtcggtatgtgctcagtcagtgtttgttgaatgattgCACCTTTCTAAATCACAAGCTGACAGAAGGGTGGGCTTCTCTCACACTCCATCTCTGCAGGTTTATGTTACTGTCTTTTTGAGAGAATCTGGTTTCAGACTTTCAGTTCTGTGGCTGTGGGCAAAAAACAACAAAGACCCAAATCCTTTTTCTTTGGGAG-TTGAGGAGAGTTTACCAGTTCGTGTTCCCATTGGGTCTGAGAACTTCGCCTTTAAAATCCGTTCCTGGCCCCTGCCTACCGCTTCCTGGCCTGGGGATTAGAGTCGA-GGGGGCCACCCTCAGTCACCTTCCTTTGACTCTCCCCACAGAAACAATAGAACTGAGCTGAGCTGGAAGAAGTAACGTGATTTCTTTGTTTGCTCATGACATGACTGCTGGGTTTGGGGGG-GCACTCAGATGTAGAGGCCCCAGTCTTGTCC
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        40365 572 -     60449 AGGTTTCTGTTAGCTCTGGGAGTCCGGGATTTCAAGGCCAAGAagagtggaaaccttggggccaagggttcctgtctgccttttctgtcctataccgccactgtaaagaacagcagctggcccgtatatgc----tcaatatttgttgaatgaatgCACCTTTGTAAATCACAAGCTGGCAGAAGGTTGGGCTTTTCTCACACTTTATCTCTGAAGATTGATGTTACTGTCCCTTGGAGAGAATCTAGTTTCAGACTTTCAGTTCTGTGGCTGTGGGTGAAAGCCAACAAAGACCCAAAACCTCTTTCTTTGGGAGCTTGAGGAGAGTTTACTAGTTTATGTTCCCATTGGGTCTGAGAACTTTGACTCTAAACTCCATTCCTGGCCCTGGTCTACAGCTTCCTGGCCTGGGGAATAGAGTCAA-GTGGGCCACCCTCAGTCACCTTCCTTTGACTCTCCCCATAGAAACAACAGAACCGAGCTCAGCTGGATGAAATAATGTGATTTATTGGTTTTCCCTTGACATGACTGCTGGGTTT-GGGGGAGCACTGAGATGTAGAGGCCCCAGTCTTGTCT
i calJac3.chrUn_GL286477    I 154 C 0
s saiBol1.JH378108           10486117 572 -  54856640 aggtttctgttagctctgagagtccaagatttcaAGGCCAATGAGGGTGGACAccttggggccaaggactcctgtctgtcttttccgtcccatatccccactgtgaagaactgtaggtggcctgtatgtgc----tcagtgtttgttgaatgaatgCACCTTTGTAAATGACAAGCTGGCAGAAGGGTGGGCTTTTCTCACACTCCATCTCTGAAGATTGATGTGACTGTCCTTTGGAGAGAATCTAGTTTCAGACTTTCAGTTCTCTGGCTCTGGGTGAAAAACGACAAAGACCCAAATCCTCTTTCTTTGGGAGCTTGAGGAGAGTTTACTAGTTTATGTTCCCATTGGGTCTGAGAACTTTGACTCTAAACTCCACTCCCGGCCCCTGCCTACTACTTCCTGGCCTGGGGAATAGAGTCGA-GTGGGCCACCTTCAGTCACCTTCCTTTGACTCTCCCCATAGAAACAACAGAACCGAGCTCAGCTGGATAAAGTAATGTGATTTCATCTTTTGCCCTTGACATGACTGCTGGGTCT-GGGATAGCACTGAGATACAGAGGTCCCAGCCTTGTCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       798593 549 -   1271737 aggtttctgttagctctgagagtccaagatttcaAGGCCAGCGagagtggaaaccttggggccaagggctcctgtctgccttttctatcccatatccccgctgtgaagaaatgtagctggcccgtatgtgc----tcaatgtttgttgaatgaatgTACCTTTGTAAATAACAAGCTGGCAGAAGGGTGGGCTTTTCTCACACTCCATCTCTGAAGATTGATGTGACTGTCCTTTGGAGAGAATCTAGTTTCAGACTTTCAGTTCTGTGGCTCTGGGTGAAAACCAACAAAGACCCAAATCCTCTTTCTTTGGGAGCTTGAGGAGAGTTTACTAGTTTATGTTCCCATTGGGTCTGAGAACTTTGACTTTAAACTCCACTCCGGGCCCCTGCCTACTGCTTCCTGGCCTGGGGAATAGAGTTG---------------AGTCACCTTCCTTTGACTCTCCCCATAGAAACAACAGAACCGAGCTCAGCTGGATGAAATAACGTGATTTCTT--------CATGACATGACTGCTGCGTTT-GGGGG-GCACTGAGACATAGAGGCCCCAGTCTTGTCT
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2610026 556 +   3863790 AGGTTTCTGTTAGCTCTGAGAGTCCAAGATTTCAAGGcccactagagtggaaacctcggggccaagggctcctgtctgccttttctatcctatattcccactgtgaagaaccatacctggcccgtatgtgc----tcagtgtttgttgaatgaatgCACCTTTGTAAATCACAAGCTGGCAGAAGAGTGGGCTTTTCTCACACTCCATCTCTGAAGATTGATGTGACCATCCTTTTGAGAGAATCTAGTTTCAGACTTTCAGTTCTGTGGCTGTGGGTGACAACCAACAAAGACCCAAATCCTCTTTCTTTGGGAGCTTGAGGAGAGTTCAC----------TCCCATTGGGTCTCAGAACTTTGACTTTAAACTTCACTCCTGGCCCCTGCCTACCGCTTCCTGGTCTGCGGAATAGAGTTGAGGGGGGCCACTGTCAGTCA----CCTTTGACTCTCCCCACAGAAACAACAGAACCGAGCTCAGCTAGATGAAGTAACATGATTTCTTCATTTGCTCATGACATGACTGCTGGGTTT-GAGGG-GCACTGAGATGTAGAGGTCC--ATCTTGTCT
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=1150846.000000
s hg38.chr15_KI270851v1_alt    105985 289 +    263054 CACCCACTCCCAGCCTGGGGAAGAAGGCTCA-CCCCCAAGATTCCACCCCATCCCCACAGGGTCCCTGATAAACTGGTCCCATGGGTGGGCCTGTTCTGGGGCAGTGGTGCCATTCT---------GGGGGCATGTCTCTTGCTGTGCCATCTCTGCCTCCACCT-AGCAAGAGCTCTGTTTTCCTCTTTCTATAGGAACAGAAGGCAAGCCACCAACATCAGGAAGCCCTAAGGAGGGAGCTAGAGGTGAGTGGAGGGTGTGAAGTTCCCTCCTGCCCTCTGGAGAATGTTTCTTTGCT
s panTro5.chr15               9362990 289 +  83230942 CACCCACTCCCAGACTGGGGAAGAAGGCTCA-CCCCCAAGATTCCACCCCATCCCCACAGGGTCCCTGATAAACTGGTCCCATGGGTGGGCCTGTTCTGGGGCAGTGGTGCCATTCT---------GGGGGCATGTCTCTTGCTGTGCCATCTCTGCCTCCCCCT-AGCAAGAGCTCTGTTTTCCTCTTTCTATAGGAACAGAAGGCAAGCCACCAACATCAGGAAGCCCTAAGGAGGGAGCTAGAGGTGAGTGGAGGGTGTGAAGTTCCCTCCTGCCCTCTGGAGAATGTTTCTTTGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73946245 286 -  99763055 CACCCACTCCCAGCCTGGGGAAGAAGGCTCA-CCCCCCAGAGTCCACCCCATCCCCACAGGATCCCTGATAACCCGGTCCCATGGGTGGGCCTGTCCTGGGGCATTGGTGGCATTCT---------GGGGGCACGTCTCTTGCTGTGCCATCTCTGCCTCCCCCT-GGTAAGAGCTCTGTCTTCCTCTTCCTACAGGAAAAGAAAGCAAACAACGAGAGACAGAAAGCC---GAAAGGGAGCTAGAGGTGAGTGGAGGGTGTGCAGTTTTCTCCTGTCCTCCGGAGAAGGTTTCTTTCCT
i panPan2.chr15             M 846 C 0
s rheMac8.chr7              164150909 286 - 169600520 CGCCCACTCCCAGCCTGGGGAAGAAGGCTCA-CCCCCCGGATCCCACCCCGTCCACACAGGGTCCCTGATAACCTGGTCCCATGGGTGGGCCTGTCCTGGGGCAGTGGTGCCCTTCT---------GGGGGCATGTCTCTTGCTGTGCCATCTCTGCCTCCCCCT-AGTAAGAGCTCTGTCTTCCTCTTTCTATAGGAAAAGAAGGCAAGCCACCAACATCAGGAAGCCCTAAGGAGGGAGCTAGAGGTGAGTGGAAGGTGTGAAGTTCCCTCCTGTCCTCTGG---AGGTTTCTTTGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170324818 289 - 171882078 CACCCACTCCCAGCCTGGGGAAGAAGGCTCA-CCCCCCGGATCCCACCCCATCCACACAGGGTCCCTGATAACCTGGTCCCATGGGTGGGCCTGTCCTGGGGCAGTGGTGCCGTTCT---------GGGGGCATGTCTCTTGCTGTGCCATCTCTGCCTCCCCCT-AGTAAGAGCTCTGTCTTCCTCTTTCTATAGGAAAAGAAGGCAAGCCACCAACATCAGGAAGCCCTAAGGAGGGAGCTAGAGGTGAGTGGAGGGTGTGAAGTTCCCTCCTGTCCTCTGGAGAAGGTTTCTTTGCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36251213 287 -  75399963 CGCCCACTCCCAGCCTGAGGAAGAAGGCTCA-CCCCCCAGATTCCACCCCATCCCCACAAGATCCCTGATAACCTGGTCCCATGGGTGGGCCTGTCCTGGGGCAGTGGTGCCATTCT---------GGGGGCA--TCTCTTGCTGTGCCATCTCTGCCTCCCCCT-AGTAAGAGCTCTGTCTTCCTCTTTCTATAGAAAAAGAAGGCAAGCCTGCAACATCAGGAAGCCCTAAGGAGGGAGCTAGAGGTGAGTGGAGGGTGTGAAGTTCCCTCCTGTCCTCTGGAGAATGTTTCTTCACT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1388249 288 +   5228064 TGCCCACTCCCAGCCTGAGGAAGAAGGCTCA-CCCCCCAGATTCCA-CCCGTCCCCACAGGGTCCCTGATAACTTGGTCCCATGGGTGGGCCTGTCCTGGGGCAGTGGTGCCATTCT---------GGGGGCATGTCTCTTTCTGTGCCATCTCTGCCTCCCCCT-AGTAAGAGCTCTGTCTTCCTCTTTCTAGAGGAAAAGAAGGCAAGCCACCAACATCAGGAAGCCCTAAGGAGGGAGCGAGAGGTGAGTGGAGGGGGTGAAGTTCCCTCCTGTCCTCCGGAGAATGTTTCTTTGCT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        40937 294 -     60449 TCCCCACTCCCATCTGGGGGAAGAAGGCTCA-CCTCCCATATTCCATCCCATCC-CACAGGGTCCCCGATAACCTGGTCCCATGGGTGGTCCTGTCCTGGGACATTGGTGGCATTCCAATGTCCTGGGGGGCATGTCTT--GCTGTGCCATCTCTGCCACCCCCT-AGTAAGAGCTCTGTCTTCCTCTTCCTATAGGAAAATAGGCCAAGCCATCACCATCAGGCAGTGCTCAGGAGGCAGGTAGAGGTGAGTGGAGGGTGTGGAGTTCCCTCCTGTCCTCTGGAGAAGG-TTCTTTGCT
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10486689 286 -  54856640 CGCCCACTCCGATCCTGGGGAAGAAGGCTCA-CCACCCAGATTCCACCCCATCC-CACAGGGTCCCTGATAACCTGGTCCCATGGGTGGTCCTGTCTTAGGGCATTGGTGGCATTCT---------GGGGGCATGTCTC--GCTGTGCCATCTCTGCCACCCTCC-AGTAAGAGCTCTGTCTTCCTCTTTCTCTAGGAAAACAAGCCAAGCCACCACCATCAGGCAGCGCTCAGGAGGCAGGTAGAGGAGAGTGGAAGCTGTGGAGTTCCCTCCTGTCCTCTGGAGACGGTTTCTTTGCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       799142 286 -   1271737 CGCCCACTCCCATCCTGGGGAAGAAGACTCACCCCCCCAGATTCCACCCTATCC-CACAGAGTCCCCAATAACCTGTTCCCATGGGTGGTCCTGTCCTGGGGCATTGGT-GCATTCT---------GGGGGCATGTCTC--CCTGTGCCATCTCTGTCACCCCCT-AGTAAGAGCTCTGTCTTCCTCTTTCTGTAGGAAAACAAGCCAAGGCATCACCATCAGGCAGCGCTCAGGAGGCAGGTAGAGGTGAGTGGAGGGTGTGGAGTTCCCTCCCGTCCTCTGGAGAAGGTTTCTTTGCT
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2610582 275 +   3863790 TGCTCACTCCCATACTGGGGAAGAAGGCTCA--TCCCCAGATTCCACCCCTTCT-TACAGGGTCCCTGATAACCTGGTCCTATGGGTGGTCCTGTCCTGGGGCATT--------------------GGGGGCATGTCTC--ACTGTGCTGTCTCTGCAACCCCCCAAGTAAGAGCTCTGTCTTCCTCTTCCTATAGGAAAATAAGCCAAACCACCACCATCAGGCAGTGCTCAGGAGGCAGGTAGAGGTGAGTGGATGGTGTGGAGTTCCTTCCTGTCCTCTGGAGAAGGTTTCTTTGCT
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=122040.000000
s hg38.chr15_KI270851v1_alt    106274 32 +    263054 TCTCTTTCAGCATTTGCTTGTCTTTTCTCCCA
s panTro5.chr15               9363279 32 +  83230942 TCTCTTTCAGCATTTGCTTGTCTTTTCTCCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73946531 32 -  99763055 TCTCTTTCAGCACTTGCTTGGCTTTTCTCCCA
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164151195 32 - 169600520 TCTCTTTCAGCACTTGCTTGTCTTTTCTCCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170325107 32 - 171882078 TCTCTTTCAGCACTTGCTTGTCTTTTCTCCCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36251500 32 -  75399963 TCTCTTTCAGCACTTGCTTGTCTTTTCTCCCA
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1388537 32 +   5228064 TCTCTTTCAGCACTTGCTTGTCTTTTCTCCCA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        41231 32 -     60449 TCTCTTTCAGCACATGCTTGGCTTTTCTCCCA
i calJac3.chrUn_GL286477    C 0 C 0
s cebCap1.NW_016107859v1       799428 32 -   1271737 TCTCTTTCTGCACGTGCTTGGCTTTTCTCCCA
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2610857 32 +   3863790 TCTCTTTCAGCACATGCTTGGCTTTTCTCCCG
i aotNan1.NW_018512720v1    C 0 I 83
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10486975  0 -  54856640 C

a score=50431.000000
s hg38.chr15_KI270851v1_alt    106306 20 +    263054 AAGGCCCAGGTTCATACCAT
s panTro5.chr15               9363311 20 +  83230942 AAGGCCCAGGTCCATACCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73946563 20 -  99763055 AAGGTTCAAATCCAGACATT
i panPan2.chr15             C 0 I 79
s rheMac8.chr7              164151227 20 - 169600520 AAGGCCCAGGTTCATACCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170325139 20 - 171882078 AAGGCCCAGGTTCATACCAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36251532 20 -  75399963 AAGGCCCAGGTTCATACCAT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1388569 20 +   5228064 AAGGCCCAGGTTCATACCAT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        41263 20 -     60449 CAGGCTCAGGCTCACACCAT
i calJac3.chrUn_GL286477    C 0 C 0
s cebCap1.NW_016107859v1       799460 20 -   1271737 CAGGCTCAGGCTCACACCAT
i cebCap1.NW_016107859v1    C 0 C 0
e aotNan1.NW_018512720v1      2610889 83 +   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10486975  0 -  54856640 C

a score=20063.000000
s hg38.chr15_KI270851v1_alt    106326 13 +    263054 ACGAATCCTTACA-
s panTro5.chr15               9363331 13 +  83230942 ACGAATCCTTACA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25848349 13 +  99763055 ACGAATCCTTACA-
i panPan2.chr15             I 341 C 0
s rheMac8.chr7              164151247 13 - 169600520 ACGAATCCTTACA-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170325159 13 - 171882078 ACGAATCCTTACA-
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36251552 13 -  75399963 ACGAATCCTTACA-
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1388589 13 +   5228064 ACGAATCCTTACA-
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        41283 11 -     60449 -CGGTGCCCTGG--
i calJac3.chrUn_GL286477    C 0 C 0
s cebCap1.NW_016107859v1       799480 13 -   1271737 -CGGTGTCCTGGAA
i cebCap1.NW_016107859v1    C 0 I 205
e aotNan1.NW_018512720v1      2610889 83 +   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10486975  0 -  54856640 C

a score=149582.000000
s hg38.chr15_KI270851v1_alt    106339 74 +    263054 TGTCAGAAAACTGAGCTTCAGATGGCACTCTACTACAGCCAGCATGCTGTCAAGCAGTTGGAAGGTGGGAATCT
s panTro5.chr15               9363344 74 +  83230942 TGTCAGAAAACTGAGCTTCAGACGGCACTCTATTACAGCCAGCATGCTGTCAAGCAGTTGGAAGGTGGGAATCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25848362 74 +  99763055 TGTCAGAAAACTGAGCTTCAGACGGCACTCTATTACAGCCAGCATGCTGTCAAGCAGTTGGAAGGTGGGAATCT
i panPan2.chr15             C 0 I 1089
s rheMac8.chr7              164151260 74 - 169600520 TGTGAGAAAACTGAGCTTCAGACGGCACTCTATTACAGCCAGCATGCTGTCCAGCAGTTGGAAGGTGGGAATCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170325172 74 - 171882078 TGTGAGAAAACTGAGCTTCAGACGGCACTCTATTACAGCCAGCGTGCTGTCCAGCAGTTGGAAGGTGGGAATCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36251565 74 -  75399963 TATCAGAAAAGTGAGCTTCGGACGGCACTCTATTACAGCCAGCATGCTGCCCAGCAGTTGGAAGGTGGGAATCT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1388602 74 +   5228064 TGTCAGAAAAGTGAGCTTCAGACGGCACTCTATTACAGCCAGCATGCTGCCCAGCAGTTGGAAGGTCTGAATCT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        41294 55 -     60449 -------------------AGAGAGCCCTATACTTCAGCGAGAATGCAGCCAGGCAGCTAGAAGGTGGGAATCT
i calJac3.chrUn_GL286477    C 0 I 1
e aotNan1.NW_018512720v1      2610889 83 +   3863790 I
e cebCap1.NW_016107859v1       799493 205 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10486975  0 -  54856640 C

a score=5600.000000
s hg38.chr15_KI270851v1_alt    106413 2 +    263054 GG
s panTro5.chr15               9363418 2 +  83230942 GG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73946662 2 -  99763055 GG
i panPan2.chr15             I 79 C 0
s rheMac8.chr7              164151334 2 - 169600520 GG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170325246 2 - 171882078 GG
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36251639 2 -  75399963 GG
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1388676 2 +   5228064 GG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        41350 2 -     60449 GG
i calJac3.chrUn_GL286477    I 1 C 0
e aotNan1.NW_018512720v1      2610889 83 +   3863790 I
e cebCap1.NW_016107859v1       799493 205 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677 8 +    138091 I
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10486975 0 -  54856640 C

a score=38732.000000
s hg38.chr15_KI270851v1_alt    106415 15 +    263054 CACCCCATCATC----CTT
s panTro5.chr15               9363420 15 +  83230942 CACCCCATCATC----CTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73946664 15 -  99763055 TACCCTGTCATC----CTT
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164151336 15 - 169600520 CACCCGGTCATC----CTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170325248 15 - 171882078 CACCCGGTCATC----CTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36251641 15 -  75399963 CACCCTGTCATC----CTT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1388678 15 +   5228064 CACCCTGTCATC----CTT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        41352 19 -     60449 CACCCCGTCATCATCATTT
i calJac3.chrUn_GL286477    C 0 C 0
s aotNan1.NW_018512720v1      2610972 15 +   3863790 CACCCCATCATC----CTT
i aotNan1.NW_018512720v1    I 83 C 0
e cebCap1.NW_016107859v1       799493 205 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1         7228 470 +    551209 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10486975  0 -  54856640 C

a score=415510.000000
s hg38.chr15_KI270851v1_alt    106430 138 +    263054 CAACCTGGCACTTTGACAGGCCTTTAGGGGGAGTCCTTTGGGCCACATCTGAATGTCTCTCATTCCAGGAGAGGCCAGGGATCTGATCAGCCGCCTGCATGATTCATGGAAGTTTGCAGGAGAGTTAGAGCAGGCTCT
s panTro5.chr15               9363435 138 +  83230942 CAACCTGGCACTTTGACAGGCCTTTAGGGGGAGTCCTTTGGGCCACATCTGAATGTCTCTCATTCCAGGAGAGGCCAGGGATCTGATCAGCCGCCTGCATGATTCATGGAAGTTTGCAGGAGAGTTAGAGCAGGCTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73946679 137 -  99763055 CAACCTGGGACTTTGACAGGTCTTCAGGGGGAGTCCTTTGGGCCCCATCTCAAC-TCTCTCATTACAGAAGAGTCCAAGGATCTGGCCGTCCGTCTGTAACATTCATTGCAGCGTAAAGGAGAGTTAGAGCGGGCTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         7698 138 +    551209 CAACCTGGCACTTTGACAGGCCTTTAGGGGGAATCCTTTGGGCCACATCTGAATGTCTCTCATTCCAGGAGAGGCCAGGGATCTGATCAGCCACCTGCATGATTCATGGAAGTTTGCAGGAGAGTTAGAGCAGGCTCT
i gorGor5.CYUI01015853v1    I 470 C 0
s rheMac8.chr7              164151351 138 - 169600520 CAACCTGGCACTTTGACAGGCCTTTAGGGGGAATCTTTTGGGCCGCATCTGAATGTCTCTCATTCCAGGAGAGTGCAGGCATCTGGTCGGCCGCCTGCATGATTCATGGAATTTTGCAAGACATTTAGAGCGGGATCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170325263 138 - 171882078 CAACTTGGCACTTTGACAGGCCTTTAGGGGGAGTCCTTTGGGCCGCATCTGAATGTCTCTCATTCCAGGAGAGTCCAGGCATCTGGTCAGCCGCCTCCATGATTCATGGAAGTTTGCCGGAGAGTTAGAGCGGGCTCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36251656 137 -  75399963 CAACCTGGCA-TTTGACAGGCCTTTAGGGGGAGTCCTTTGGGCCGCATCTGAATGTCTCCCATTCCAGGAGAGTCCAGGGATCTGGTCAGCTGCCTGCATGATTCATGGAAGTTTGCAGGAGAGTTAGAGCGGTCTCT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1388693 138 +   5228064 CACCCCGGCACTTTGACAGGCCTTTAGGGGGAGTCCTTTGGACCGCATCTGAATGTCTCTCATTCCAGGAGAGTCCAGGGATCTGGTCAGCCGCCTGCATGATTCATGGAAGTTTGCAGGAGAGTCAGAGCGGGCTCT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        41371 138 -     60449 CAACCTGGCACTTTGACAGGCTTTTAGGGGGAGTCCCTTGGGCTTCATCTCAACCTCTCTTCTTCCAGGAGACTGCAGATACCTCTTCGGCTGCCTGCAACATGCCTCCCAACACGTGGAGGACTTGAAGCAGGCTTT
i calJac3.chrUn_GL286477    C 0 C 0
s aotNan1.NW_018512720v1      2610987 138 +   3863790 CAACCTGGCACTTTGTCAGGCTTTTAGGGGGAGTCCCTTGGGCCTCATCTCAACCTCTCTCATTCCAGGAGACTGCAGATACCTCTCTGGCCACCTACACTGTGCCTCAGAACACGTGGAAGACTTGAAGTAGGCTCT
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       799493 205 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10486975   0 -  54856640 C

a score=1728569.000000
s hg38.chr15_KI270851v1_alt    106568 461 +    263054 CTCTGCTGT---CGCTACACAGAAGAAGAAGGCGGATAGGGTGAGTCCAAACA-CGGCC----CCGTCCCTTGGGAGCCCAGCTTCGCAGATGGAGGAGTGAGCCTAAAGGTCCCTTCTGTAGGATGGAGTGTCCTGCCCAGAAGGCAGCAT-GGCCATTTCTTGCTGC-TTTTGTGTGTGGTTGTTAGAGGCAGACTGGGGCTGAGTCGGCTGTTGTGGGTGAGTTGGggagcactgtggggagcgagcactggacatagagctcagaggccaagtgcccgccctgcccatacttggctgtggccttggc--caagt-----cCTAAGTGGCGGTTA----GGGTACTTGTACCATAAAGGTACAGAAGAGTATCTTGAGTATGTTATTATTTGTGTGGAGAGAGGGGGC---------------------------AGGTGTATATGTGTGTGTGTGTACGTATTATGGTAACATACATAAAACACGTTTGTAAGGATTCATTAAAA
s panTro5.chr15               9363573 461 +  83230942 CTCTGCTGT---CGCTACACAGAAGAAGAAGGCGGATAGGGTGAGTCCAAACA-CGGCC----CCGTCCCTTGGGAGCCCAGCTTCGCAGATGGAGGAGTGAGCCTAAAGGTCCCTTCTGTAGGATGGAGTGTCCTGCCCAGAAGGCAGCAT-GGCCATTTCTTGCTGC-TTTTGTGTGTGGTTGTTAGAGGCAGACTGGGGCTGAGTCGGCTGTTGTGGGTGAGTTGGggagcactgtggggagcgagcactggacatagagctcagaggccaagtgtccgccctgcccatacttggctgtggccttggc--caagt-----cCTAAGTGGCGGTTA----GGGTACTTGTACCATAAAGGTACAGAAGAGTATCTTGAGTATGTTATTATTTGTGTGGAGAGAGGGGGC---------------------------AGGTGTATATGTGTGTGTGTGTACATATTATGGTAATATACATAAAACACGTTTGTAAGGATTCATAAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73946816 457 -  99763055 CTCTGCTGTCACCGCCACACAGAAGAAGAAGGCGGAGAGGGTGAGTCCAACCACCTGCC----CCGTCCCCTGGGAGCCTGGCTTCGCAGACAGAGGAGTGAGCCTAAAGGTCCCTTCTGCAGGATGGAGTGTCCTGCCCAGAAGGCAGCAT-GGCCATTTCTCACTGC-TTTTTTGTATGGTTGTTAGCGGCAGCTTGGGACTGAGTCAGCTGCTGTGGGTGAGTTGGGGAGCACTCTGGGGAGTGAGCACTGGACACAGAGCTTGGAGGCCAAGTGCCTGCCATGCCTTTACCTGGCTGTGGTCTTGGC--CAAGT-----CCTAAGTGGGGTATT----GGGTACTTGTACTGTGAAGGTACAGAAGAGTACCTTTACTGTGTTACCATTTCTGTAGAGAGAGGAAAC---------------------------------GTGGGTGTGTGTGTGTACATATTATGATAATATACATAAAATATGTTTGCAAGTGTTCAT--AAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         7836 461 +    551209 CTCTGCTGT---CGCTACACAGAAGAAGAAGGCGGATAGGGTGAGTCCAAACA-CGGCC----CCGTCCCTTGGGAGCCCAGCTTCGCAGATGGAGGAGTGAGCCTAAAGGTCCCTTCTGTAGGATGGAGTGTCCTGCCCAGAAGGCAGCAT-GGCCATTTCTTGCTGC-TTTTGTGTGTGGTTGTTAGAGGCAGACTGGGGCTGAGTCGGCTGTTGTGGGTGAGTTGGGGAGCACTGTGGGGAGCGAGCACTGGACATAGAGCTCAGAGGCCAAGTGCCCGCCCTGCCCATACTTGGCTGTGGCCTTGGC--CAAGT-----CCTAAGTGGCGGTTA----GGGTACTTGTACCATAAAGGTACAGAAGAGTATCTTGAGTATGTTATTATTTGTGTGGAGAGAGGGGGC---------------------------AGGTGTATATGTGTGTGTGTGTACGTATTATGGTAATATACATAAAACGCGTTTGTAAGGATTCATAAAAA
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164151489 482 - 169600520 CTCTGCTGT---TGCTACACAGAAGAAGAAGGCTGACAGGGTGAGTCCAACCACCTGCC----CCGTCCCCTGGGAACCCGGCTTCACAGATGGAGGAGTGAGCCTAAAAGTCCCTTCTGCAGGATGGAGTGTCCTGCCCAGAAGACAGCAT-GGCCATTTCTTGCTGC-TTTTGTGTGTGGTGGTTAGAGGCTGACAGGGGCTGAGTCGGCTGCTGTGGGTGAGTTGGGGGGCGCCGTGGGGAGTGAGCAGTGGACATAGAGCTCACAGGCCAAGTGCCCGCCCTGCCCATATTTGACTGTGGACTTGGC--CAAGT-----CCCAAGTGGCGGTTA----GGATACTTGTACTATAAAGGTACAGAAGAGTAGCTTGAGTA---TGTTATTTGTGTTGAGAGGGGAAGCCtgtgtatgtgtg---tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTATGGGAATATACAATAAACATGTTTGTAAGGATTCAT-AAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170325401 456 - 171882078 CTCTGCTGT---CGCTACACAGAAGAATAAGGCTGACAGGGTGAGTCCAACCCCCTGCC----CCGTCCCCTGGGAGCCCAGATTCACAGATGGAGGAGTGAGCCTAAAAGTCCCTTCTGCAGGATGGAGTGTCCTGCCCAGAAGACAGCAT-GGCCATTTCTTGCTGC-TTTTGTGTGTGGTGGTTAGAGGCAGCCTGGGGCTGAGTCGGCTGCTGTGGGTGAGTTGGGGGGCGCCGTGGGGAGTGAGCACTGGACATAGAGCTCGCAGGCCAAGTGCCCGCCCTGCCCATACTTGGCTGTGGCCTTGGC--CAAGT-----CCCAAGTGGCGGTTA----GGATACTGGTACCATAaaggtacagaagagtatgttgagtacgttgttatctgtgttgagagaaggaga-------------------------------acatgtgtgtgtgtgtatgtgtattatggtaatatacaaaaaacatgtttgtaagga-tcat-aaaa
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36251793 462 -  75399963 CTTTGCTGT---CATTACCCAGAAGAAGAAGGCGGACAGGGTGAGTCCAACCACCTGCC----CCGTCCCCTGGGACCCTGGCTTCGCAGATGGAGGAGTGAGCCTAAAGGTCCCTTCTGTAGGATGGAGTGTCCTGCCCAG-AGGTAGCAT-GGCCATTTCTTGCTGCTTTTTGTGTGTGGTGGTTAGAGGCAGACGGGGGCTGAGTCGGCTGCTGTGGGTGAGTTGGGGGGTACTGTGGGGAGCGAGCACTGGATAGAGAGCTCGGAGGCCAAGTGCCTGCCCTGCCCATACTTGGCTGTGGCCTTGGCCACAAGTGGTGGCCTAAGTGGTGGTTA----GGGTACTTGTACCATAaaggtacggaagagtatcttgagtatgttattatctgtgttgagagagggagc---------------------------------acgcatgtgtgtgtgtatgtattatggtaatatacataaaacatgtttgtaaggattcat-aaaa
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1388831 458 +   5228064 CTCTGCTGT---CATTACACAGAAG---AAGGCGGACAGGGTGAGTCCAACCACCTGCCCCGTCCGTCCCTTGGGACCCTGGCTTCGCAGATGGAGGAGTGAGCCTAAAGGTCCCTTCTGTAGGATGGAGTGTCCTGCCCAGAAGGTAGCAT-GGCCATTTCTTGCTGC-TTTTGTGTGTGGTTGTTAGAGGCAGACTGGGGCTGAGTCGGCTGCTGTGGGTGAGCTGGGGGGTACTGTGGGGAGCGAGCACTGGACATAGAGCTCGGAGGCCAAGTGCCTGCCCTGCCCATACTTGGCTGTGGCCTTGGC--CAAGT-----CCTAAGTGGTGGTTA----GGGTATTTGTACCATAAAGGTACGGAAGAGTATCTTGAGTATGTTATTATTTGTGTTGAGAGACGGAGC-------------------------------ACGCATATGTGTGTGTGTATGTATTATGGTAATATACATAAAACATGTTTGTAAGGATTCAT-AAAA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        41509 454 -     60449 GTCTGATGT---CTCCACATGGAAAAAGGTGGTGGACAGGGTGAGTCCAACCACCTGCC----CCATCCCCTGGCAATCTGGCTTCCCAGATGGAGGAGTGATGGTAAAGGTTCCTTCTGCAGGATGGAGTGTCCTTCCCAGGAGGCAGCATGGGCCATTTCTTGGTGC-TTCCGTGTGTGATTGTTAGAGGCAGGCTGGGGCTGAGCCAGCTGCTGTGGGTGAGTTGCGG-GTGCTGTAGGGAGTGAGCACAGGACACAGAGATCGAAGGCCAAG---------TGCTCTTACCTGGCTGTGGCCTTGGC--CAAGT-----CCTGGGTAGGGATTA----GGGTACTCGTACCATGAAGGTACGGAAGAGTATCTTTAGTATGTTACCACTTGTGTAGAGAGAGGGAAC------ACgtgtt---------------tgtgtgtgtgtgtgtgtgtgtgtgtATTATGGTAACATACATAAAACA----TGTAAGAATTCAT-TAAA
i calJac3.chrUn_GL286477    C 0 C 0
s cebCap1.NW_016107859v1       799698 437 -   1271737 CTCTGATGT---CTCCACACAGAAAAAGGCGGCGGACAGGGTGAGTCCAACCACCTGCC----CCGTCCCCTGGCAACCTAGCTTCCCAGATGGAGGAGTGAGTCTAAAGGTCCCTTCTGCAGGATAGAACGTCCTTCCTAGAAGGCACGACGGGCCATTTCTTGGTGC-TTTTGTGTGTGGTTGTTAGAGGCAG------------------GCTGTGGGTGAGTTGGGG-CTGCTATAGGGAGTGAGCACAGGACACAGAGCTCAGAGGCCAAGTGCCCGTCCTGCCCTTACCTGGCTGTGGCCTTGGC--CAAAT-----CCTAGGTGGGAGTTA----GGGTACTTGTACCATGaaggtgcggaagagtatctttagtatgttaccatttgtgtagaaagagggaac------acgtgtt---------------------------tgtgtgtgcgtgtatcatggtaagatacataaaacatgtttgtaaggattcat-taaa
i cebCap1.NW_016107859v1    I 205 C 0
s aotNan1.NW_018512720v1      2611125 472 +   3863790 CTCTGATGT---CTCCACAGAGAAAAAGTTGGAGGACAGGGTGAGTCCAACCACTTGCC----CCATCCCCTGGTAACCCGGCTTCACAGATGGAGGAGTGAGTCTAAAGGTCCCTTCTGCAGGATGGAGTGTCCTTCCCAGAAGGCAGCATGGGCCATTTCTTGCTGC-TTTTGTGTGTGGTTGTTAGAGGCAG---------------GCTGCTGTGGGTGAGTTGGGG-GTGCTGTAGGGAGCGAGCACAGGACACAGAGCTCAGTGGCCAAGTGCCCACCCTGCCCTTGCCTGGCTGTGGCCTTGAC--CAAAT-----CCTAGGTGGGGGTTATAACAGGTACTTATACCATGaaggtacagaagagtatctttagtatgttaccatttgtgtagagagagggaat------acgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatcatggtaagatacataaaatatctttgtaaggattcacataaa
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10486975   0 -  54856640 C

a score=1207746.000000
s hg38.chr15_KI270851v1_alt    107029 268 +    263054 AACTCAGGATAgaggca---cagtgttg-gggggagatatttcccttctggactttctgagttttggactatgcgaacgtatcatcctttcaaaaattcaacaaaGGATTAATTTCCTCCTTCTTAA----------------------------------------------------------------------------------------CTGTGCCCCTACCTCcagc-ggaagaatgggcttagagaatcagatatacctgggtgttgaaatcccagct----ccaagtgatcttaggc-agcacttaacctttaataccgcatg-tttttcatctaca--caatagaggtaataatggtaa
s panTro5.chr15               9364034 268 +  83230942 AACTCAGGATAGAGGCA---CAGTGTTG-GGGGGAGATATTTCCCTTCTGGACTTTCTGAGCTTTGGACTATGCGAACGTATCATCCTTTCAAAAATTCAACAAAGGATTAATTTCCTCCTTCTTAA----------------------------------------------------------------------------------------CTGTGCCCCTACCTCCAGC-gaaagaatgggcttagagaatcagatatacctgggtgttgaaatcccagct----ctaagtgatcttaggc-agcacttaacctttaataccgcatg-tttttcatctaca--caatagaggtaataacagtaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73947273 275 -  99763055 AActcaggagagagcaa---cagggtgg-ctgggagatacttcccttctgtaccttctgagtttgggactatgtgaatgtatcatcctttcaaaaagtgaacaaaAGATTAATTTTCCCCTTCCTAG----------------------------------------------------------------------------------------CTGTGCCCCCACCCCCAGCaagaaaaatgggcttagagaattggatagatctgggtgtttaaatcccagctctgcctaagtgaacttaggcaagcacttaacctcaaatactccatgttttttcatctaca--caatagaggtcatcatagtaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         8297 267 +    551209 AACTCAGGATAGAGGCA---CAATGTTG--GGGGAGATATTTCCCTTCTGGACTTTCTGAGTTTTGGACTATGCGAACGTATCATCCTTTCAAAAATTCAACAAAGGATTAATTTCCTCCTTCTTAA----------------------------------------------------------------------------------------CTGTGCCCCTACCTCCAGC-gaaagaatgggcttagagaatcagatatacctgggtgttgaaatcccagct----ctaagtgatcttaggc-agcacttaacctttaataccgcatg-tttttcatctaca--caatagaggtaataatggtaa
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164151971 269 - 169600520 ATCTCAGGAGAGAGGAA---CAGTGTTG-GGGGGAGATGTTTCCCTTCTGTACTTTCTGAGTTTTGGACGATTCGAATGTATCATCCTTTCAAAATGTGAACAAATGATTAATTTCCTCCTTCCTAT----------------------------------------------------------------------------------------CTTTGTCCCTACCCCcagt-gaaagaatgggcttagagaatcagatatacctgggtgttgaaatcccagct----ctacgtgatcttaggcaagcacttaacccttaataccccatg-tttttcatctata--cgatagaggtaataatGGTAG
i rheMac8.chr7              C 0 I 53
s macFas5.chr7              170325857 267 - 171882078 atatcaggagagaggaa---gaatg-tg-gggggaaatatttcccttccgtactttccgagttttggactattcaaacgtatcatcctttcaaaaagtcaacaaaTGATTAATTTCCTCCTTCTTAT----------------------------------------------------------------------------------------CTGTGTCCCTA-CCCCAGC-aaaagaatgggcttagagaatcagatatacctgggtattgaagtaccagct----gtaagtgatcttaggcaagcacttaacccttaataccccatg-tttttcatctaca--caatagaggtaataatggtaa
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36252255 270 -  75399963 aactcaggagagaggaa---cagtgttgtgggggagatatttcccttctgtactttctgagttttgcactatgggaatgtatcatccttttaaaaagtcaataaaAGATTAATTTCCTCCTCCTTGT----------------------------------------------------------------------------------------CTGTGCCCCTACCCTCGGT-gaaagaatgggcttagagaatcagatatacctgggtgttgaaatcccagct----ctaagtgatcttaggcaagcacttaacctttaataccccacg-tttttcatctaca--caatagaggtaataatggtaa
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1389289 270 +   5228064 AACTCAGGAGAGAGGAA---CAGTGTTGTAGGGGAGATATTTcccttctgtactttctgagttttggactacgtgaacgtatcatccttttaaaaagtcaataaaaGATTAATTTCCTCCTCCTTGT----------------------------------------------------------------------------------------CTGTGCCCATACCCTcagt-gaaagaatgggcttagagaatcagatatacctgggtgtggaaatcccagct----ctaagtgatcttaggcaagcacttaacctttaataccccatg-tttttcatctaca--caatagaggtaataatggtaa
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        41963 272 -     60449 AACTCAGGAGAGAGGAA---CAGTGTAA-ATGAGAGGTATTTCTCTCTTATACCTTCTGAGTTTTGGACTATGCCAGCCTATCGTCCTTTCAAAAAGCCAACGAAAGGTTAATTTCCTTGTTCTTAT----------------------------------------------------------------------------------------CTGTGCCCCCACCCCCAg--gaaagaatgggtttagagaatcagagatacctgggggttgaaattccagctctatctcagtgatgttaggcaagcacttaacctttaataccttatg-tttttcatctgca--agatagaggtaataatagtaa
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10486975 270 -  54856640 AACCCAAGAGAAAggaa---cagtgtga-gtgggagatatttccctcttatacct--tgaattttggactatgtgaacctatcgtcctttcaaaaagtcaacaaaAGATTAATATCCTCCTTCTTAT----------------------------------------------------------------------------------------CTGTGCCCCCACACCCAg--gaaagaatgggcttagagaatcagcgatacccgggggttgaaatcccagctctgtctcagtgatcttaggcaagcacttaacctttaataccccatg-tttttcatctgca--tgatagtggtaataatagtaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       800135 273 -   1271737 aactgaggagagggagatatcagtgtga-gtgggagatatttcccttttgtaccttctgagttttggactatatgaacatattgtcctttcaaaaagtcaac--aaGAATAATTTCCTCCTTCTTAT----------------------------------------------------------------------------------------CTGTGCCCCCACCTCCAA--gaaagaatgggcttagagaatcagagaaacctgggtgttgaaatcccagctctgtctcagtgatcttaggcaagcacttaacctttagtaccccatg-tttttcatctgca--cgatggaggtagtaatagtaa
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2611597 362 +   3863790 aactcaggagagaggaa---cagtgtgg-gtgggagatatttccctcttgtaccttccgagttttggactatgtgaacctattgtcctttcaaaaagtcaacaaaAGATTAATTTCCTTCTTCTTTTAGAAGGATTTTTTTTGTTGTTGATTAATCTTTTTTTGTTTAATTAATTTTTTGTTGATTAATCTTTTAATCAACAAAAGATTAATTTCCTGTGTCCCCACCCCCAg--gaaagaatgggtttagagaatcagggatacctgggtgttgaaatcccagctctgtctcagtgatcttaggcaagcacttaacctttaatatcccatg-tttttcatctacatttaatagaggtaataatagtaa
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=7829.000000
s hg38.chr15_KI270851v1_alt    107297 2 +    263054 cc
s panTro5.chr15               9364302 2 +  83230942 cc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73947548 2 -  99763055 ct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         8564 2 +    551209 cc
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170326124 2 - 171882078 cc
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36252525 2 -  75399963 cc
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1389559 2 +   5228064 cc
i colAng1.NW_012115722v1    C 0 I 723
s calJac3.chrUn_GL286477        42235 2 -     60449 cc
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10487245 2 -  54856640 ct
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       800408 2 -   1271737 cc
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2611959 2 +   3863790 ct
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677 8 +    138091 I
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164152240 53 - 169600520 I

a score=1221.000000
s hg38.chr15_KI270851v1_alt    107299 1 +    263054 a
s panTro5.chr15               9364304 1 +  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73947550 1 -  99763055 g
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         8566 1 +    551209 a
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170326126 1 - 171882078 g
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36252527 1 -  75399963 a
i chlSab2.chr5              C 0 C 0
s calJac3.chrUn_GL286477        42237 1 -     60449 a
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10487247 1 -  54856640 g
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       800410 1 -   1271737 g
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2611961 1 +   3863790 a
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1389561 723 +   5228064 I
e manLeu1.NW_012101289v1       112677 8 +    138091 I
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164152240 53 - 169600520 I

a score=176350.000000
s hg38.chr15_KI270851v1_alt    107300 43 +    263054 tctcctatggaggttgtgaggattaaatgggattgttagcata
s panTro5.chr15               9364305 43 +  83230942 tctcctatggaggttgtgaggattaaatgggattgttagcata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73947551 43 -  99763055 tttcctatggtggttgcgaggattaaatgggattgctagcatg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         8567 43 +    551209 tctcctatggaggttgtgaggattaaatgggattgttagcata
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170326127 43 - 171882078 tctcctatggaggttgtgaggattaaatgggactgttagcgca
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36252528 43 -  75399963 tcacctatggaggttgtgaggattaaatgggattgttagtgca
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1390284 43 +   5228064 TCTCCTGTGGAGgttgtgaggattaaatgggactgttagcgca
i colAng1.NW_012115722v1    I 723 C 0
s calJac3.chrUn_GL286477        42238 41 -     60449 tctcc--tggtggttgtgaggattaaatgggattgttagcaca
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10487248 41 -  54856640 tctcc--tggtgttggtgaggattaaatgggattgttagcata
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       800411 41 -   1271737 tctcc--tggtggttgtgaggattaaatgggattgttagcata
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2611962 41 +   3863790 tctcc--tggtggttgtgaggattaaatgggattgttagcata
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164152240 53 - 169600520 I

a score=808041.000000
s hg38.chr15_KI270851v1_alt    107343 159 +    263054 gtgcctggtgaagcactcaagaaaggttcgaacagtggtagtactaACAGTAATAGCAATAACAATATTATCTGATCGCTCTGGGCCCCTGTTAGCCAGCTCTAAATTCAATCTCTTTCCCTGTCCCTTCCACATTCACTGAGTTCTTTGAAAAACAAA
s panTro5.chr15               9364348 159 +  83230942 gtgcctggtgaagcactcaataaaggttccaacaatggtagTAATAACAGTAATAACAATAGCAATATTATCTGATCGCTCTGGGCCCCTATTAGCCAGCCCTAAATTCAATCTCTTTCCCTGTCCCTTCCACCTTCACTGAGTTCTTTGAAAAACAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73947594 159 -  99763055 gtatctggtgaagcactccataaaAGTTCAAACAGTGgtaataataacagtaataacaatagcaatattaTCTGATCTCTCTGGGCCTCTGTTAGCCAGCTATAAATTCGATCTCTTTCCCTGTCCCTTCCAACTTTACTGAGTTCTTTAAAAACCAAA
i panPan2.chr15             C 0 I 4174
s gorGor5.CYUI01015853v1         8610 159 +    551209 gtgcctggtgaagcactcaataaaggttccaacaatggtagTGATAACAGTAATAACAATAGCAATATTATCTGATCGCTCTGGACCCCTGTTAGCCAGCCCTAAATTCAATCTCTTTCcctgtcccttccaccttcactgagttctttgaaaaacaaa
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164152293 159 - 169600520 GTGCCTGGTGAAGCAGTCAGTAAAGGTTCCAACAGTGGTAGTAGTAACAGTAAGAACAATAGCAATATTATCTGATCTCTCTGGGCCCCTGTTAGCCAGCTATGAATTCAGTCTCTTTCCCTGTCCCTTCCACCTTTACTGAGTTCTTTGAAAGACAAA
i rheMac8.chr7              I 53 C 0
s macFas5.chr7              170326170 159 - 171882078 gtgcctggtgaagcactcagtaaaggttccaacagtggtagTAATAACAGTAAGAACAATAGCAATACCATCTGATGTCTCTGGGCCCCTGCTAGCCAGCTATGAATTCAGTCTCTTTCCCTGTCCCTTCCACCTTTACTGAGTTCTTTGAAAAACAAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36252571 159 -  75399963 gtgcctggtgaagcagtcagtaaaggttccaacagtggtagcAATAACAGTAATAACAATAGCAATATTATCTGATCTCTCTGGGCCCCTGTTAGCCAGCTATAAATTCAATCTCTTTCCCTGTCTCTTCCACCTTTACTGAGTTCTTTGAAAAACAAA
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1390327 159 +   5228064 gtgcctggtgaagcactcagaaaaggttccaacagtggtagcAATAACAGTAATAACAATAGCAATATTATCTGATCTCTCTGGGCCCCTGTTAGCCATCTGTCAGTTCAATCTCTTTCCCTGTCTCTTCCACCTTTACTGAGTTCTTTGAAAAACAAA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        42279 157 -     60449 gtgcctggtaaagcactcaatgaaGATTCTAATAGTGGTAGTAATAACAGTCATAAAAATAGCAATATTATCTGATCTCTCTCGGCTCCT--TAGCCAGCTATAAATTCAATCTCTTTCCCTGTCCCTTCCCCACTTACTGAGTTCTTTGAAAAACAAA
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10487289 157 -  54856640 gtgcctggtaaagcactcagtgaaGATTCCAACAGTGGTAGTATTAACAGTCATAACAATAGCAATATTATCTGATCTCTCTGGGCTCCT--TAGCCAGCTATAAATTCAATCTCTTTCCTTGTCCCTATCACCCTTACTGAGTTCTTTGAAAAACAAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       800452 157 -   1271737 gtgcctggtaaagcactcagtgaaGATTCCAACAGTGGTAGTAATAACAGCCATAACAATAGCAATATTATCTGATCTCTCCGGGCTCAT--TAGCCAGCTATAAATTCAATCTCTTTCTCTGTCCCTTCCACTCTTACTGAGTTCTTTGAAACACAAA
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2612003 153 +   3863790 gtgcctggtaaagcactcaatgaaGATTCCAACAGTGGTAGTAATAACAGTCATAACAATAGCAATATTTTCTG----CTCTGGGCCCCT--TAGCCAGCTATAAATTCAATCTCTTTCCCTGTCCCTTCCACCCTCACTGAGCTCTTTGAAAAACAAA
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=2269002.000000
s hg38.chr15_KI270851v1_alt    107502 543 +    263054 TGAGgg--ccaggtgctctcgctcacgcctgtaatgccagcactttgggaggctgaggtgggcggatcacctgcggtcaggagttcaagactagactgaccaacacgaagaaaccccgtctctactaaaaatacaaaattagcccggtgtggtggcacatgcctgtaatcccaactactcgggaagctgaggcaggagaattgcttgaacccaggaggtgtaggttgtggtgagctgagattgtgccattgcactccagtgagggcaacaagaatgaaactctgcc-----------------------aaaaaaaaaaataa--aaagaaagaaagaaa------gaaagaaagaaagaaaAACAAATGAGACCATGGGCTTGGAAATGCCTTGAGAACACGTCAGGTGTGATTGAGAGTGAGGAAGTGTTACTGTGGAGTAGTCACCGTAGCAGTTGTTCCTGGTCGTCCAGCTACTGCTGTGCCTGCTCTATCCTGACTTAACCTTTCTCTATTTGCAGTACATTGAGGAGTTAACAAAGGAGAGGGACGCCCTGAGT----CTGGAACTGTACAGG
s panTro5.chr15               9364507 511 +  83230942 TGAGgg--ccaggtgctctcgctcacgcctgtaatgccagcactttgggaggctgaggtgggcggatcacctgcggtcaggag------------gtgaccaacacgaagaaaccccgtctctactaaaaatacaaaattagccccgtgtggtggcacatgcctgtaatcccaactactcgggaagctgaggcaggagaattgcttgaacccaggaggtgtaggttgtggtgagctgagattgtgccattgcactccagtgagggcaacaagaatgaaactctgcc-----------------------aaaaaaaaaa----------------------------aaaaaaagaaagaaaaacaaATGAGACCATGGGCTTGGAAATGCCTTGAGAACACGTCAGGTGTGATTGAGAGTGAGGAAGTGTTACTGTGGAGTAGTCACTGTAGTAGTTGTTCCTGGTCGTCCAGCTACTGCTCTGCCTGCTCTATCCTGACTTAACCTTTCTCTATTTGCAGTACATTGAGGAGTTAACAAAGGAGAGGGACGCCCTGAGT----CTGGAACTGTACAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25849525 519 +  99763055 TGAGgg--ccaggtgctctcgctcacgcctgtaatgccagcactttgggaggctgaggtgggcggatcacctgcggtcaggagttcaagactagactgaccaacacgaagaaaccccgtctctactaaaaatacaaaattagccccgtgtggtggcacatgcctgtaatcccaactactcgggaagctgaggcaggagaattgcttgaacccaggaggtgtaggttgtggtgagctgagattgtgccattgcactccagtgagggcaacaagaatgaaacgctgcc-----------------------aaaaaaaaaa--------------------------------aaagaaagaaaaacaaaTGAGACCATGGGCTTGGAAATGCCTTGAGAACACGTCAGGTGTGATTGAGAGTGAGGAAGTGTTACTGTGGAGTAGTCACTGTAGCAGTTGTTCCTGGTCGTCCAGCTACTGCTCTGCCTGCTCTATCCTGACTTAACCTTTCTCTATTTGCAGTACATTGAGGAGTTAACAAAGGAGAGGGACGCCCTGAGT----CTGGAACTGTACAGG
i panPan2.chr15             I 1089 C 0
s gorGor5.CYUI01015853v1         8769 516 +    551209 tgaggg--ccaggtgctctcgctcacgcctgtaatgccagcactttgggaggctgaggtgggcggatcacctgcagtcaggagttcaagactagactgaccaacacgaagaaaccccgtctctactaaaaatacaaaattagcctggtgtggtggcacatgcctgtaatcccaactactcgggaagctgaggcaggagaattgcttgaacccaggaggtgtaggttgtggtgagctgagattgtgccactgcactccagtgagggcaacaagaatgaaactctgcc-----------------------aaaaaaaaaa-----------------------------------gaaagaaaaacaaatgagaccatgggcttggaaatgccttgagaacacgtcaggtgtgatggagagtgaggaagtgttactgtGGAGTAGTCACTGTAGCAGTTGTTCCTGGTCGTCCAGCTACTGCTCTGCCTGCTCTATCCTGACTTAACCTTTCTGTATTTGCAGTACACTGAGGAGTTAACAAAGGAGAGGAACGCCCTGAGT----CTGGAACTGTACAGG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164152452 549 - 169600520 TGAGgg--ccaggtgctctggctcatgcctgtaatgccagcactttgggaggccgaggctggcggatcacctgaggttgggagttcaagactacactgacggacatggagaaaccccatctctactaaaaatacaaagttagccgggtgtggtggcacatgcctataatcccagctaatcgggaggctgaggcaggagaattgcttgaacccgggaggcggaggttgtggtgagctgagattgcgccattgcactccagtcagggcaacaagagtcaaactctgcctga--------------------agaaaaagaaaaag--taagaaagaaagaaacaaaacaaaacaaa-aaagaaaaccaaaGGAGACCCTGGGCTTGGAAGTGCCTTGAGAGCATGTCAGGTGTGACTGGGAGTG-GGGAGTGGTG-TGTGGAGTGGTCACGGTGGCTGTTGTTCCTGGTCGGCCAGCCGCTCCTCTGCCTGCTCTATCCTGACTTCACCTTTCTCTATTTGCAGTACATCGAGGAGTTAACAAAGGAGAGGGATGCCCTGAGT----CTGGAACTGTACAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170326329 547 - 171882078 TGAGgg--ccaggtgctctggctcatgcctgtaatgccagcactttgggaggccaaggcgggcggatcatctgaggtcaggagtttaagactagactgacggacatggagaaaccccatctctactaaaaatacaaagttagccgggtgtggtggcacatgcctgtaatcccagctaattgggaggctgaggcaggagaatcgcttgaactcgggaggcggaggttgtgatgagctgagattgcaccattgcactccagccagggcaacaagactgaaaatctgcctga--------------------aaacaaacaaacaa---aaaaaagtaagaaa-GACACAAAACAAA-AAAGAAAACCAAAGGAGACCCTGGGCTTGGAAGTGCCTTGAGAGCATGTCAGGTGTGACTGGGAGTG-GGGAGTGGTG-TGTGGAGTGGTCACGGTGGCTGTTGTTCCTGGTCGGCCAGCCGCTCCTCTGCCTGCTCTATCCTGACTTCACCTTTCTCTATTTGCAGTACATCGAGGAGTTAACAAAGGAGAGGGACGCCCTGAGT----CTGGAACTGTACAGG
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36252730 569 -  75399963 TGAGgg--cc-ggtgctctgactcacgcctgtaatcctagcactttgggaggccgaggcgtgcgtatcacctgaggtcaggagttcaagactagactgaccaatatggagaaaccctatctctactaaaaatacagaattagctgggtgtggtggcacatgactgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggcagagggtgtggtaagccgagattgcgccattgcactccagccagggcaacaagagcgaaactctgcctcaaaaaacaaaacaaaacaaacaaacaaaCaaaaac---aaaaagaaaagaca-gaaacaaaacaaagaaagaaaagcaaaTGAGACCATGGGCTTGGAAATGCCTTGAGAACATGTGAGGTGTGGTTGGGAGTGAGGAAGTGTTACTGTGGAGTAGTCACGAGAGCTGTTGTTCCCGGTTGGCCAGCTGCTCCTCTGCCTGCTGTGTCCTGACTTCACCTGTCTCTATTTGCAGTACATCAAGGAGTTAACAAAGGAGAGGGACGCCCTGAGT----TTGGAGCTGTACAGA
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1390486 560 +   5228064 TGAGgg--cc-ggtgctctgactcacgcctgtaataccagcagtttgggaggccaaggcgtgcgtatcacctgaggtcaggagttgaagactagactgaccaatatggagaaacctcatctctactaaaaatacagaattagctgggtgtggtggcacatgactgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggcagagggtgtggtgagccaagattgtgccattgcactccagccagggcaacaagagcgaaactctgcctcaaaaaccaaa-----------aaacaaaaaaacaaaacaaaaaGAaaagaaa-gaaacaaaacaaagaaagaaaAACAAATGAGACCGTGGTCTTGGAAATGCCTTGCGAACATGTC-GGTGTGATTGGGAGTGAGGAAGTGTTACTGTGGAGCAGTCACTAGAGCTGTTGTTTCTGGTTGACCAGCCGCTCCTCTGCCTGCTGTGTCCTGACTTCACCTTTCCCTATTTGCAGTACATCGAGGAGTTAGCAAAGGAGAGGGGCGCCCTGAGT----CTGGAGCTGTACAGA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        42436 509 -     60449 TGAGGGCCccaggctcgttggctcacacctgtaatcccagcactttgggagactgtgctgggcagatcacctgaggttgggagttcgagaccagcctaaacaacatggagaaaccctttctttactaaaaatacaaagttagccaggcatgatggtgcatggcagcagtcccaggtactcaggaggctgaggcagaagaatcacttgaacctgggaggtggaggttgtggtgaaccgagatcacgcccttgtcctccagcctgggcaacaagagcg-aattccatctc---------------------aaaaaagaaa--------------------------------------agaaaaacaaaGGAGACCATGGG------CATGCCTTGGGAACATACCAGGTGTGACTGAGAGCGAGGAAGTGTTGCTGTGAAGTAGTCACTGCAGCCATTGTTCCT-GTCGGCCAGCTGCTGCTCTGTCTGCTGCATCCTGACTTAACCTTTCTGTATTTGCAGTACAACAAGGAGTTGACAAAGGAGAGGGAAGGCCTGAGT----CTGGAACTGTACAGG
i calJac3.chrUn_GL286477    C 0 M 1817
s saiBol1.JH378108           10487446 495 -  54856640 TGAGgg--ccaggctcattggctcacacctgtaatcccagcactttgggagaccgaggtgggcagatcgcctgaggttgggagttcgaggccagcctgaacaacatggaaaaaccctgtctatcctaaaaatacaaaattagccaggtgtgatggtgcatgg-----------------caggaggccgaggcaggagaatcacttgaacctgggtggtggaggttgtggtgaactgtgatcacgccattgccctccagcctgggcaacaagagtgaaactccatctc---------------------aaaaaagaaa--------------------------------------agaaaaacaaaGGAGACCATGGG------CATGCCTTGGGAACGTGCCAGGTGTGACTGAGAGCAAGGAGGTGTTGCTGTGGAGTAGTCACTGCAGCCGTTGTTCCT-GTTGGCCGGCGGCTGCTCTGTCTGCTGCATCCTGACTTAACCTTTCCTTATTTGCAGCGCAATGAGGCGTTGACAAAGGAGACAGATGACCTGAGTCTAGCTAGAACTGTGCAGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       800609 505 -   1271737 TGAGgg--ccagcctcattggctcacacctgtaatcccagcactttgggagactgaggtgggcagatcacttgaggttgggagtttgagaccagcctgaacaacatggagaaaccctgtccctactaaaaatacaaaattagccaggcgcgatggtgcatggcagcagtcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgtggcgaaccgagatcacgccattgccctccatcctgggcaacaagagcgaaactccatctc---------------------aaaaaagaaa--------------------------------------agaaaaacaaaGGAGACCATGGG------CATGGCTTGGGAACATGCCAGGCGTGACTGAGAGCGAGGAGGTGTTGCTGTGGAGTAGTCACTGCACCTGTTGTTCCT-GTCGGCCGGCTGCTGCTCTGTCTGCTGCATCCTGACTTAACCTTTCTGTATTTGCAGTGCAATGAGGAGTT---AAAGGAGATGGATGGCCTGAGT----CTGGAACTGTGCAGG
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2612156 520 +   3863790 TGAGgg--ctgagcatggtggctcacacctgtaatcccagcactttgggagactgaggtgggcagatcacctaaggttgggagttcgagaccagcctgaactacatggagtaacctggtctctactaaaaatacaaaattagccaggcatgatggtgcatggcagcagtcccggctacctaggaggctgaggcaggagaataacttgaacctgggagatggaggttgtggtgaaccaagatcacaccattgtcctccagcctgggcaacaagagtgaaactgcatctcaaaat----------------aaaaaagaaa--------------------------------------agaaaaaTGAAGGAGACCATGGGCTTGGACATGCCTTTGGAACATGCCAGGCGTGACTGAGAGTGAGGAAGTGTTACTGTGGAGTAGTCActgccgctgttgttcctggtcggctggctgctgctctgtctgctgTATCCTGACTTAACCTTTCTGTAATTGCAGTGCAATGAGGAGTTACTAAAGGAGAGGGACAGCCTGAGT----CTGGAACTGCACAGG
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=1006642.000000
s hg38.chr15_KI270851v1_alt    108045 230 +    263054 AACACGTAGGATGGGGGAAGGTGGAATGGGAGGTCTGGGGGCCCTTAGCATGGGTGGTGTGCTGGGAGGTGGGGGGTCCAGGTGAGTGTGGGGAGAGGCTCATACATGTTTTCATGTGTgcacacggaagctctagtgctggctgtgccactgactcatggggtagcctcaggcaactcatgtcttctctctggcctgccacctgggacttttaattcctggggtccctt
s panTro5.chr15               9365018 230 +  83230942 AACACGTAGGATGGGGGAAGGTGGAATGGGAGGTCTGGGGGCCCTTAGCATGGGTGGTGTGCTGGGAGGTGGGGGGTCCAGGTGAGCGTGGGGAGAGGCTCATACATGTTTTCATGTGTGCACACGGAAgctctagtgccggctgtgccactgactcatggggtagcctcaggcaactcatgtcttctctctggcctgccacctgggacttttaattcctggggtccctt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25850044 230 +  99763055 AACACGTAGGATGGGGGAAGGTGGAATGGGAGGTCTGGGGGCCCTTAGCATGGGTGGTGTGCTGGGAGGTGGGGGGTCCAGGTGAGCGTGGGGAGAGGCTCATACATGTTTTCATGTGTGCACACGGAAgctctagtgccggctgtgccactgactcatggggtagcctcaggcaactcatgtcttctctctggcctgccacctgggacttttaattcctggggtccctt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         9285 227 +    551209 AACACGTAGGATGGGGGAAGGTGG-ATGGGAGGTCT-GGGGCCCTTAGCGTGGGTGGTGTTCTGGGAGGTGAGGGGTACAGGTGAGCATGGGGAGAGGCTCATACATG-TTTCATGTGTGCACACGGAAgctctagtgccggctgtgccactgactcatgggatagcctcaggcaactcatgtcttctctctggcctgccacctgggacttttaattcctggggtccctt
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164153001 229 - 169600520 AACACGTAGGATGGGGGATCGTGGGATGGGAGGTCTTGGGGCTCTTAGCGTGGGGGGTGTGCTGGGAGGT-GGGGGTACAGGTGAGCATGGTGAGAGGCTCATACAGGTTTTCATGTGTGCACAGGGAAgctctagtgccggctgtgccactgactcatggggtagcctcaggcaactcatgtcttctctctggCCTGCCACCTGGGGCTTTAAATTCCTGGGGTCCCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170326876 229 - 171882078 AACACGTAGGATGGGGGACGGTGGGATGGGAGGTCTTGGGGCTCTTAGCGTGGGGGGTGTGCTGGGAGGT-GGGGGTACAGGTGAGCATGGTGAGAGGCTCATACAGGTTTTCATGGGTGCACAGGGAAgctctagtgccagctgtgccactgactcatggggtagcctcaggcaactcatgtcttctctctggCCTGCCACCTGTGATTTTTAATTCCTGGGGTCCCTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36253299 229 -  75399963 AACATGTAGGATGGGGGAAGGTGGGATGGGAGGTCTGGAGGCCCTTAGCATGGGTGGTGTGCTGGGAGGTGGGGGGTACAGGTGAGCATGGTGAGAGGCTCACACAGGTTTTCATGTGTGTGCAGGGAAgctctagtgccagctgtgccactgactcat-gggtagcctcaggcaactcatgtcttctctctggCCTGCCACCCGGGACTTTTAATTCCTGGGGTCCCTT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1391046 229 +   5228064 AACACGTAGGATGGGGGAAACGGGGATGGGAGGTCTGGAGGCCCTTAGCGTGGGTGGTGTGCTGGGAGGTGGGGGGTACAGGTGAGCATGGTGAGAGGCTCATACAGGTTTTCATGTGTGTGCAGGGAAgctctagtgccagctgtgccactgactcat-gggtagcctcaggcaactcatgtcttctctctggcctGCCACCTAGGACTTTTCATTCCTGGGGTCCCTT
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10487941 230 -  54856640 AACACGTAGGACGGGGGATGGTGGGATGGGAGGTCTGGGGGCCCTTAGCATGGGTGAAGTGCTGGGAGGTGGGGGGTACAGGTGAGCATGGTGAGGGGGTCATAGAGGTTTGCATGTGTGCCCAGCAAggctctagtgccggctgtgccactgactcatggggtagcctcgggcaactcatgtcttctctctggcctgccacctgtgacttttaattcctggggtccctt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       801114 212 -   1271737 AACACGTAGGATGGGGGATGGT---------------GGGGCCCTTAGCGTGGGTGGAGTGCT-GGAGGTCGGGGGTACAGGTGAGCATGGTGAGGGGGTCATAGAGGTTTGC--GTGTGCCCAGCAAAgctctagtgccggctgtgccactgactcatggggtagcctcaggcaactcatgtcttctctctggCCTGCCACCTGTGACTTTTAATTCCTGGGGTCCCTT
i cebCap1.NW_016107859v1    C 0 I 903
s aotNan1.NW_018512720v1      2612676 230 +   3863790 AACACGTAGGATGGGGGAAGGTGGAATGGGAGGTCTGGGGGCCCTTGGCATGGGTGGTGTGCTGGGAGGTGGGGGGTACAGGTGAGCATGGTGAGGGGGTCATACAGGTTTGCGCGTGTGCCCAGCAAAgctctggtgcctgctgtgccactgactcatggggtagcctcaggcaactcatgtcttctctctggcctgccacctgtgacttttaattcctggggtccctt
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e calJac3.chrUn_GL286477        42945 1817 -     60449 M

a score=13864.000000
s hg38.chr15_KI270851v1_alt    108275 5 +    263054 ccagc
s panTro5.chr15               9365248 5 +  83230942 ccagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25850274 5 +  99763055 ccagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         9512 5 +    551209 ccagc
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164153230 5 - 169600520 CCAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170327105 5 - 171882078 CAAAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36253528 5 -  75399963 CCAAT
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1391275 5 +   5228064 CCAAT
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10488171 5 -  54856640 ccaat
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2612906 5 +   3863790 ccagt
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677 8 +    138091 I
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e calJac3.chrUn_GL286477        42945 1817 -     60449 M

a score=2000468.000000
s hg38.chr15_KI270851v1_alt    108280 491 +    263054 gccacggttct---gtggttGTGGGGCGAGGGTAGGGGGTCAATCACCAAAGTGGTCTTTTATGTTCTTCATTCATTCCTTTCTCTACTGCCTCTGGCCATAGCATAACTGATGAGGAGCTGAAGGAGAAAAATGCCAAACTACAAGAAAAACTTCAACTTGTAGAATCTGAAAAGTCTGAGATCCAGCTCAACGTAAAGGAGCTAAAAAGGAAACTGGAGAGGGCCAAGCTCCTGCTGCCACAGGTGAGCAGCTGCAGCCCCG-GGGGTTGTGGGAGACCCATCCAGCTGGGACCATGGTCTAGGGATCATGCAGGGTATGGGGAGGCTCCAGCCAAGAGCTGGAAAATTTGGGTCCTTGTTctggtcccgccatagaatcctctagagtgtactaaaaatgtacaaattggggccctgcctggggaatcagaatctcaagagttagggcttaa---aaatat-ttttttaaAGGATCATGGATGAAAACCATTATTT
s panTro5.chr15               9365253 491 +  83230942 gccacggttct---gtggttGTGGGGCGAGGGTAGGGGGTCAATCACCAAAGCGGTCTTTTATGTTCTTCATTCATTCCTTTCTCTACTGCCTCTGGCCATAGCATAACTGATGAGGAGCTGAAGGAGAAAAATGCCAAACTACAAGAAAAACTTCAACTTGTAGAATCTGAAAAGTCTGAGATCCAGCTCAACGTAAAGGAGCTAAAAAGGAAACTGGAGAGGGCCAAGCTCCTGCTGCCACAGGTGAGCAGCTGCAGCCCCG-GGGGTTGTGGGAGACCCATCCAGCTGGGACCATGGTCTAGGGATCATGCAGGGTATGGGGAGGCTCCAGCCAAGAGCTGGaaaatgtgggtccttgttctggtcccgccatagaatcctctagagtgtactaaaaatgtacaaattggggccctgcctggggaatcagaatctcaagagttagggcttaa---aaatat-ttttttaaAGGATCATGGATGAAAACCATTATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25850279 491 +  99763055 gccacggttct---gtggttGTGGGGCGAGGGTAGGGGGTCAATCACCAAAGCGGTCTTTTATGTTCTTCATTCATTCCTTTCTCTACTGCCTCTGGCCATAGCATAACTGATGAGGAGCTGAAGGAGAAAAATGCCAAACTACAAGAAAAACTTCAACTTGTAGAATCTGAAAAGTCTGAGATCCAGCTCAACGTAAAGGAGCTAAAAAGGAAACTGGAGAGGGCCAAGCTCCTGCTGCCACAGGTGAGCAGCTGCAGCCCCG-GGGGTTGTGGGAGACCCATCCAGCTGGGACCATGGTCTAGGGATCATGCAGGGTATGGGGAGGCTCCAGCCAAGAGCTGGaaaatgtgggtccttgttctggtcccgccatagaatcctctagagtgtactaaaaatgtacaaattggggccctgcctggggaatcagaatctcaagagttagggcttaa---aaatat-ttttttaaAGGATCATGGATGAAAACCATTATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1         9517 491 +    551209 gccacggttct---gtggttGTGGGGTGAGGGTAGGGGGTCAATCACCAAAGCGGTCTTTTATGTTCTTCATTCATTCCTTTCTCTACTGCCTCTGGCCACAGCATAACTGATGAGGAGCTGAAGGAGAAAAATGCCAAACTACAAGAAAAACTTCAACTTGTAGAATCTGAAAAGTCTGAGATCCAGCTCAACGTAAAGGAGCTAAAAAGGAAACTGGAGAGGGCCAAGCTCCTGCTGCCACAGGTGAGCGGCTGCAGCCCCG-GGGGTTGTGGGAGCCCCATCCAGCTGGGACCATGGTCTAGGGATCATGCAGGGTATGGGGAGGCTCCAGCCAAGAGCTGGAAAATTTGGGTCCTTGTTctggtcccgccatagaatcctctagagtgtactaaaaatgtacaaattggggccctgcctggggaatcagaatctcaagagttagggcttaa---aaatat-ttttttaaAGGATCATGGATGAAAACCATTATTT
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164153235 491 - 169600520 GCCACGGTTCT---GTGGTTGTGGGGTGAAAGTAGAGGGTTGATCACCAAAGCAGTCCTTTCTGTTCTTCGTTCATTCCTTTATCTACTGCCTCTGGTCGTAGCATAACCGATGATGAGCTGAAGGAGAAAAATGCCGAACTACAAGAAAAACTTCGACTTGTAGAATCTGAGAAGTCTGAGATCCAGCTCAATGTAAAGGAGCTAGAAAGGAAGCTGGAGAAAGCCAAGCTCCTGCTGCCACAGGCAAGCAGCTACAGCCCCG-GGGGTTGTGGGATCCCCGTCCGGCTGGGACCATGGTCTAGGGATCATGCAGGGTATGGGGAGGCTCCAGTCAAGAGCTAGAAAATTTGGGCCCTTGTTCTGGTCCcaccatagaatcctctagagtgtgctaaaaatctacaaagtggggccctgcctggggaatcagaatctc-agagttagggcttaa---aaatatatattttaaAGGATCATAGATGAAAACCATTGTTT
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              170327110 490 - 171882078 GCCATGGTTCT---GTGGTTGTGGGGTGAAAGTAGAGGGTTGATCACCAAAGCGGTCCTTTCTGTTCTTCGTTCATTGCTTTATCTACTGCCTCTGGCCATAGCATAACTGATGATGAGCTGAAGGAGAAAAATGCCGAACTACAAGAAAAACTTCGACTTGTAAAATCTGAAAAGTCTGAGATCCAGCTCAACGTAAAGGAGCTAGAAAGGAAGCTGGAGAGGGCCAAGCTCCTGCTGCCACAGGCAAGCAGCTACAGCCCCG-GGGGTTGTGGGATCCCCGTCCGGCTGGGACCATGGTCTAGGGATCATGCAGGGTATGGGGAGGCTCCAGTCAAGAGCTAGAAAATTTGGGCCCTTGTTCTGGTCCCGCCATAGAATCCTCTAGAGTGTGCTAAAAATCTACAAAGTGGGGCCCTGCCT-GGGAATCAGAATCTC-AGAGTTAGGGCTTAA---AAATACATATTTTAAAGGATCATGGGTGAAAACCATTGTTT
i macFas5.chr7              C 0 I 1
s chlSab2.chr5               36253533 489 -  75399963 GCCACGGTTCT---ATGGTTGTGGGGCAAAAGTAGAGGGTTCATCACCAAAGTGGTCCTTTCTGTTCTTCATTCATTCCTTTCTCTACTGCCTCTGGCCATAGCATAACCAATGAGGAGCTGAAGGAGAAAAATGCCGAACTGCTAGAAAAACTTCGACTTGTAGAATCTGACAAGTCTGAGATCCAGCTCAACGTAAAGGAGCTAAAAAGAAAGCTGGAGAGGGCCAAGCTCCTACTGCCACAGGCGAGTGGCTGCAGCCCCG-GGGGTTGTGGGCGCCCCATCCGGCTGGGACCTTGGTCTAGGGATCATGCAGGTTATGGGGAGG-TCCAGCCAGGAGCTCAAAAATTTGGGTCCTTGTTCTTCTCCTG-CATAGAATCCTCTAGAGTGTGCTAAAAATATACAAATTGGGGCCCTGCCTGGGATATCAGAATCTC-AGAGTTAGGGCTTAA---AAATATATATTTTAAAGGATCATGGGTGAAAACCATTGTTT
i chlSab2.chr5              C 0 I 1
s colAng1.NW_012115722v1      1391280 488 +   5228064 GCCACAGTTCT---GTGGTTGTGGGGCGAAAGTAGAGGGTTGATCACCAATGCGGTCCTTTCTGTTCTTCGTTCATTCCTTTCTCTACTGCCTCTGGCCATAGCATAACCGATGAGGAGCTGAAGGAGAAAAATGCCGAACTGCAAGAAAAACTTCGACTTGTAGAATCTGAAAAGTCTGAGATCCAGCTCAACGTAAAGGAGCTAAAAAGGAAGCTGGAGAGGGCCAAGCTCCTACTGCCACAGGCGAGTGGCTGCAGCCCCG-GGGGTTGTGGGAGCCCCATCCGGCTGGGACCTTGGTCTAGGGATCATGCAGGTTATGGGGAGG-TCCAGCCAAGAGCTCAAAAATTTGGGTCCTTGTTCTGGTCCtg-catagaatcctctagagtttgctaaaaatctacaaattggggtcctgcctggggaaccagaatctc-agagttagGGCTTAA---AAAAAT-TTTTTTAAAGGATTATGGATGAAAACCATTATTT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        44763 495 -     60449 GCCCCGGTTCTGTGGTGGTTGTGGGGTGTGGGCAGAGGGTTGATCACCCAAGTGTTCCTTTCTGTTCCTCGCTCATGCCTTTCTCTACTGCCTCTGGCCATAGTATAATCCATGAGGAGCTGCACAGGAAGAACACCAAACTGGAAGAACAACTTAGACTCCTGCAGTCTGAGAAGTTCAGCATCCAGCTCTATGTCCAGGAGCTACAAAGAAAGCTGAATAGGGCCAAGCTCCTGCTGCCACAGGTGAGAGGCTACAGCCCCAGGGGGTTGTGGGAGCCCCATCCATCTGGTGCCATGGTCTAGGGATCATGCCGGGTATGGAAAGGCTCCAGCCCAGAGCTGGAAAATCTGGGTCCTGGTGCTGGTCCTGCCATAGAATCCTCTAGAGTGTGCTAAAAGTCTACAAATTGTGGCCCTGCCTGGGGAATCAGAATCTC-AGGGTTAGGACTGAG--AAAAAAT-TTTTTTAAAGCATTGTAGATGAAAGCCATTATTT
i calJac3.chrUn_GL286477    M 1817 C 0
s saiBol1.JH378108           10488176 495 -  54856640 gccaaggttctgtggtGGTTGTGGGGTGAGGGTAAAGGGTTGATCAGCAAAGTGGTCCTTTCTGTTCTTCGTTCATGCCTTTCTCTAATGCCTCTGGCCATAGTATAATCATTGAGGAGCTGCAGAGGAAGAACACCGAGCTGGAAGAAAAACTTAGAGTCCTACAGTCCAAAAAGTCCAGCAGCCAGCTCAGTGTGCAGGAGCTACAAAGAAAGCTGGCTAGGGCCAAGCGCCTGCTGTCACAGGTGAGAGGCTGCAGCCCCA-GGGGTTGCGGGAGCCCCATCCATCTGGGGCCATGGTCTGGGGATCATGCCGGGTATGGGGAGGCTCGAGCTCAGAGCTGGAAAATTTGGGTCCTGGTGCTGGTCCCGCCATGGAATCCTCTAGAGTGTGCTAAAAATCTACAAATTGTGGCCCTGCCTGGGGAATCAGAATCTC-AGGGTTAGGACTTAG-AAAAAAAA-GTTTTTTAAGCTTCATGGATGAAAACCATTCTTT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2612911 489 +   3863790 gccatggtttt---gtggttGTGGAGCGAGGGTAAAGGGTTGATCACCAAAGTGGTCCTTTTTGTTCTTCATTCATGACTTTCTCTACTGCCTCTGTACATAGTATAATCAATGAGGAGCTGCA---GAAGAACACCAAACTGGAAGAACAACTTCAACCCCTACAGTCTGAAAAGGGCACCATCCAGCTCAATGTCCAGGAGCTAAAAAGAAAGCTGTATAGGGCCAAGCTCCTGCTGCCACCAGTGAGAGGCTACAGCCCCGGGGGGTTGT-GGAGCCCCATCCAGCTGGGGCCATGGTCTCCAGATCATGCAGGGTATGGGAAGGCTCCAGCCCAGAGCTGGAAAATCtgggtcctggttctggtcccactataaaatcctctagagtgtgctaaaaatctacaaactgtggccctgactgcagaatcagaa-ctc-agggttagggcttaggaaaaaaaa-ttttttaaagcATCGTGAATGAAAACCATTATTT
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=910.000000
s hg38.chr15_KI270851v1_alt    108771 1 +    263054 T
s panTro5.chr15               9365744 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25850770 1 +  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        10008 1 +    551209 T
i gorGor5.CYUI01015853v1    C 0 C 0
s aotNan1.NW_018512720v1      2613400 1 +   3863790 T
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1391768 0 +   5228064 C
e manLeu1.NW_012101289v1       112677 8 +    138091 I
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164153726 1 - 169600520 I
e chlSab2.chr5               36254022 1 -  75399963 I
e saiBol1.JH378108           10488671 0 -  54856640 C
e calJac3.chrUn_GL286477        45258 0 -     60449 C
e macFas5.chr7              170327600 1 - 171882078 I

a score=7332.000000
s hg38.chr15_KI270851v1_alt    108772 13 +    263054 ATAGATTACattt
s panTro5.chr15               9365745  9 +  83230942 ATAGATTAC----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25850771  9 +  99763055 ATAGATTAC----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        10009  9 +    551209 ATAGATTAC----
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170327601 13 - 171882078 ATAGATTACATTT
i macFas5.chr7              I 1 C 0
s aotNan1.NW_018512720v1      2613401 13 +   3863790 GTAGATGACATTT
i aotNan1.NW_018512720v1    C 0 I 3
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1391768  0 +   5228064 C
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164153726  1 - 169600520 I
e chlSab2.chr5               36254022  1 -  75399963 I
e saiBol1.JH378108           10488671  0 -  54856640 C
e calJac3.chrUn_GL286477        45258  0 -     60449 C

a score=182.000000
s hg38.chr15_KI270851v1_alt    108785 2 +    263054 at
s macFas5.chr7              170327614 2 - 171882078 AT
i macFas5.chr7              C 0 M 100
e aotNan1.NW_018512720v1      2613414 3 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25850780 0 +  99763055 C
e panTro5.chr15               9365754 0 +  83230942 C
e gorGor5.CYUI01015853v1        10018 0 +    551209 C
e colAng1.NW_012115722v1      1391768 0 +   5228064 C
e manLeu1.NW_012101289v1       112677 8 +    138091 I
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164153726 1 - 169600520 I
e chlSab2.chr5               36254022 1 -  75399963 I
e saiBol1.JH378108           10488671 0 -  54856640 C
e calJac3.chrUn_GL286477        45258 0 -     60449 C

a score=0.000000
s hg38.chr15_KI270851v1_alt    108787 2 +    263054 tt
e aotNan1.NW_018512720v1      2613414 3 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25850780 0 +  99763055 C
e panTro5.chr15               9365754 0 +  83230942 C
e gorGor5.CYUI01015853v1        10018 0 +    551209 C
e colAng1.NW_012115722v1      1391768 0 +   5228064 C
e manLeu1.NW_012101289v1       112677 8 +    138091 I
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164153726 1 - 169600520 I
e chlSab2.chr5               36254022 1 -  75399963 I
e saiBol1.JH378108           10488671 0 -  54856640 C
e calJac3.chrUn_GL286477        45258 0 -     60449 C
e macFas5.chr7              170327616 100 - 171882078 M

a score=260261.000000
s hg38.chr15_KI270851v1_alt    108789 314 +    263054 atttatttatttatttatttatttatttatttgagaagtagtctcactctgtcacccaggccagagtgcagtggcgcaatctcggctcactgcaagctccaccccccggcttcacgccattctcctgcctcagcctcccaagtagctgggactacaggtgcccaccaccacacccggctaatttttttgtatttttagtagagacggggtttcactgtgttaaccaggatggtctcgatctcctgacctcgtgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgctcccagcc
s panTro5.chr15               9365754 301 +  83230942 ------------Atttatttatttatttatttgagaagtagtctcactctgtcacccaggccagagtgcagtggcgcaatctcggctcactgcaagctccaccccccggcttcacgccattctcctgcctcagcctcccaagtagctgggactacaggtgcccaccaccacacccggctaa-ttttttgtatttttagtagagacagggtttcactgtgttaaccaggatggtctcgatctcctgacctcgtgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25850780 305 +  99763055 --------Atttatttatttatttatttatttgagaagtagtctcactctgtcacccaggccagagtgcagtggcgcaatctcggctcactgcaagctccaccccccggcttcacgccattctcctgcctcagcctcccaagtagctgggactacaggtgcccaccaccacacccggctaa-ttttttgtatttttagtagagacagggtttcactgtgttaaccaggatggtctcgatctcctgacctcgtgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        10018 294 +    551209 ----------------Atttatttatttatttgagaaggagtctcactctgtcacccaggccagagtgcagtggcgcaatctcggctcactgcaagctccaccccccggcttcacgccattctcctgcctcagcctcccaagtagctgggactacaggtgc---ccaccacacccggctaa-ttttttgtatttttagtagagacggggtttcactgtgttaaccaggatggtctcgatctcctgacctcgtgattcgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagcc
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170327716 314 - 171882078 ATTTAtttatttatttatttatttttttttttgagacggagtcttgctctgtcacccaggctggagtgcagtggccggatctcagctcactgcaagctccgcctcccgggtttacgccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccaccacgcccggctagtttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcctgtctcggcctcccaaagtgctgggattacaggcttgagccaccacgcccggcc
i macFas5.chr7              M 100 I 100
e aotNan1.NW_018512720v1      2613414   3 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1391768   0 +   5228064 C
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164153726   1 - 169600520 I
e chlSab2.chr5               36254022   1 -  75399963 I
e saiBol1.JH378108           10488671   0 -  54856640 C
e calJac3.chrUn_GL286477        45258   0 -     60449 C

a score=2548.000000
s hg38.chr15_KI270851v1_alt    109103 1 +    263054 T
s panTro5.chr15               9366055 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25851085 1 +  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        10312 1 +    551209 T
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170328130 1 - 171882078 T
i macFas5.chr7              I 100 C 0
s colAng1.NW_012115722v1      1391768 1 +   5228064 T
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45258 1 -     60449 T
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10488671 1 -  54856640 T
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018512720v1      2613414 3 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677 8 +    138091 I
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164153726 1 - 169600520 I
e chlSab2.chr5               36254022 1 -  75399963 I

a score=55747.000000
s hg38.chr15_KI270851v1_alt    109104 16 +    263054 ATAGATTACATTTATG
s panTro5.chr15               9366056 16 +  83230942 ATAGATTACATTTATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25851086 16 +  99763055 ATAGATTACATTTATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        10313 16 +    551209 ATAGATTACATTTATA
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164153727 16 - 169600520 ATAGATTACATTTATA
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              170328131 16 - 171882078 ATAGATTACATTTATA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254023 16 -  75399963 ATAGATTACATTTAGA
i chlSab2.chr5              I 1 C 0
s colAng1.NW_012115722v1      1391769 16 +   5228064 ATAGATTACATTTATA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45259 16 -     60449 GTAGATGACATTTCTA
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10488672 16 -  54856640 ATAGATGACATTTCTA
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018512720v1      2613414  3 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=290658.000000
s hg38.chr15_KI270851v1_alt    109120 72 +    263054 TGGCTAGCTCATGATTCTGCTTCCTTCTGAGGTTCAAAAAAACACTT--TCACTATTCCAGCAGCAGCTGCAGG
s panTro5.chr15               9366072 72 +  83230942 TGGCTAGCTCATGATTCTGCTTCCTTCTGAGGTTCAAAAAAACACTT--TCACTATTCCAGCAGCAGCTGCAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25851102 72 +  99763055 TGGCTAGCTCATGATTCTGCTTCCTTCTGAGGTTCAAAAAAACACTT--TCACTATTCCAGCAGCAGCTGCAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        10329 72 +    551209 TGGCTAGCTCATGATTCTGCTTCCTTCTGAGGTTCAAAAAAACACTT--TCACTATTCCAGCAGCAGCTGCAGG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164153743 70 - 169600520 TGACTATCCCATGAGTCTGTTTCCTTCTGAGGTTCAAACCAAC--TT--TCACTGTTCCAGCAGCAGCTGCAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170328147 70 - 171882078 TGACTATCCCATGAGTCTGTTTCCTTCTGAGGTTCAAACCAAC--TT--TCACTGTTCCAGCAGCAGCTGCAGG
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254039 72 -  75399963 TGACTATCCCATGAGTCTGTTTCCTTCTGAGGTTCAAACCAACATTT--TCACTGTTCAAGCAGCAGCTACAGG
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1391785 72 +   5228064 TGGCTAACTCATGAGTCTTCTTCCTTCTGAGGTTCAAACCAACACTT--TCACTATTCCAGCAGCAGCTGCAGG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45275 72 -     60449 TGGCTAACTCATGAGTCTATTTCTTTTTGAGGTTCAAACCAACACTT--TCACTATTCCAGGAGCAGCTACAGG
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10488688 74 -  54856640 TGGCTAGCTCATGAGTCGATTTCCTTCTGAGGTTTAAACCAACACTTTATATTTATTTCAGCAGCAGCTACAGG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2613417 72 +   3863790 TGGCTAGCTCATGAGTCTATTTCTTTTTGAGGTTCAAACCAACACTT--TCACTATTCCAGGTGCAGCTACAGG
i aotNan1.NW_018512720v1    I 3 I 147
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=271369.000000
s hg38.chr15_KI270851v1_alt    109192 94 +    263054 CGGAGGCTGACCACCTGGGTAAGGAGCTGCAGAGTGTGTCAGCAAAGCTCCAAGCCCAGGTGGAAGAGAACGAGTTGTGGAACCGCCTGAACCA
s panTro5.chr15               9366144 94 +  83230942 CGGAGGCGGACCACCTGGGTAAGGAGCTACAGAGTGTGTCAGCAAAGCTCCAAGCCCAGGTGGAAGAGAACGAGTTGTGGAACCGCCTGAACCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25851174 94 +  99763055 CGGAGGCGGACCACCTGGGTAAGGAGCTACAGAGTGTGTCAGCAAAGCTCCAAGCCCAGGTGGAAGAGAACGAGTTGTGGAACCGCCTGAACCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        10401 94 +    551209 TGGAGGCTGACCACGTGGGTAAGGAGCTGCAGAGTGTGTCAGCAAAGCTCCAAGCCCAGGTGGAAGAGAACAAGTTGTGGAACCGCCTGAACCA
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164153813 94 - 169600520 AGGAGGCTGACCACCTGGGTAAGGAGCTGCAGAGTGTGTCCGCGAAGCTCCAAGCCCAGGTGGAAGAGAACGAGTTGTGGAACCGCCTGTACCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170328217 94 - 171882078 AGGACGCTGACCACCTGGGTAAGGAGCTGCAGAGTGTGTCCGCGAAGCTCCAAGCCCAGGTGGAAGAGAACGAGTTGTGGAACCGCCTGTACCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254111 94 -  75399963 CGGATGCTGACCACCTGTGTAAGGAGCTGGAGAGTGTGGCAGCAGAGCTGCAAGCCCAGGTGGAAGAGAACGAGTTCTGGAACCACATGAACCA
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1391857 94 +   5228064 CGGAGGCTGACTACCTGGGTAAGGAGCTGGAGAGTGTGGCAGCAAAGCTCCAAGCCTGGGTGGAAGAGAACGAGTTGTGGAACCACATGAACCA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45347 94 -     60449 AGGAGGTCGAGAACCTGAAGCAGGAGCTTCACAGACTGAAAGGAGAGCTCCAAGAACAGGTGGATGAAAATAATCGCTGGAAACGCCTCTACCa
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10488762 94 -  54856640 AGGAGGCCACACACCTGAGGCAGGATGTGGAGAGAGTAGCAGGAGAACTCCAAAGCCAGCTGGATAAAAATAAATGCTGGAGGTGCTTGTACCA
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018512720v1      2613489 147 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=126563.000000
s hg38.chr15_KI270851v1_alt    109286  68 +    263054 GCAACAGGAGGAGAAGATGTGGAGGCA----------------------------------------------------------------------------------GGAG---------------------------------------------------------------------------------GAGAAGATA---------------------CAGGAGTGGGAGGAGAAGATACAGGAGC
s panTro5.chr15               9366238  68 +  83230942 GCAACAGGAGGAGAAGATGTGGAGGCA----------------------------------------------------------------------------------GGAG---------------------------------------------------------------------------------GAGAAGATA---------------------CAGGAGCGGGAGGAGAAGATACGGGAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25851268  68 +  99763055 GCAACAGGAGGAGAAGATGTGGAGGCA----------------------------------------------------------------------------------GGAG---------------------------------------------------------------------------------GAGAAGATA---------------------CAGGAGCAGGAGGAGAAGATACGGGAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        10495 147 +    551209 GCAACAGGAGG---AGATGTGGAGGCAGGAGAAGATACAGGAGCGGGAGGAGAAGATGCAGGAGCGGGAGGAGAAGATACAGGAGCGGGAGGAGAAGATGCAGGGAGCGGGAG---------------------------------------------------------------------------------GAGAAGATG---------------------CAGGAGCGGGAGGAGAAGATACAGGAGC
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164153907  66 - 169600520 GCAACAGGAAGAGAAGATGTGGAGGCA----------------------------------------------------------------------------------GGAA---------------------------------------------------------------------------------GAGAAGATA---------------------CAGGAGCAGGAAGAGAAGATACGGGA--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170328311 170 - 171882078 GCAACAGGAGGAGAAGATGTGGAGGCA----------------------------------------------------------------------------------GGAAGAGAAGATACGGGAGCAGGAGAAGAAGATGCATGATCAGGAGAAGATAAGGGAGCAGGAGGAGAAGATGCACACGCAGGAGGAGAAGATACGGGAGCAGGAGAAGAGGAGGCAGGAGCAGGAAGAGAAGATGTGGGAGC
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254205  68 -  75399963 GCAACaggaggagaagttgtggaggca----------------------------------------------------------------------------------ggag---------------------------------------------------------------------------------gagaagata---------------------cgggagcaggaggagaagatgcgggagc
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1391951  86 +   5228064 GCAATAGGAGGAGAAGTTGTGGAGGCA----------------------------------------------------------------------------------GGAG---------------------------------------------------------------AAGCTGCGGAAGCAGGAGGAGAAGCTG---------------------CAGGAGCAGGAGGAGAAGCTGCGGGAGC
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45441  68 -     60449 ggagcaggaggagaagatctggaaggg----------------------------------------------------------------------------------ggag---------------------------------------------------------------------------------gagcagata---------------------caggagggggagcagaagatacgggatc
i calJac3.chrUn_GL286477    C 0 C 0
e aotNan1.NW_018512720v1      2613489 147 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112677   8 +    138091 I
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856   0 -  54856640 C

a score=25286.000000
s hg38.chr15_KI270851v1_alt    109354 20 +    263054 AGGAGGAGAAGATACGGGAG
s panTro5.chr15               9366306 20 +  83230942 AGGAGGAGAAGATACGGGAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        10642 20 +    551209 GGGAGGAGAAGATACAGGAG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164153973  1 - 169600520 -------------------G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170328481 20 - 171882078 AGGAGGAGAAGATGCATGTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254273 20 -  75399963 aggaggagaagatatggagg
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392037 20 +   5228064 AGGAGGAGAAGATACGGGAG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45509 20 -     60449 aggagcagaagatgaggcag
i calJac3.chrUn_GL286477    C 0 C 0
e aotNan1.NW_018512720v1      2613489 147 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851336  0 +  99763055 C
e manLeu1.NW_012101289v1       112677  8 +    138091 I
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856  0 -  54856640 C

a score=50512.000000
s hg38.chr15_KI270851v1_alt    109374 20 +    263054 CAGGAGGAGAAGATACGGGA
s panTro5.chr15               9366326 20 +  83230942 CAGGAGGAGAAGATACGGGA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        10662 20 +    551209 CGGGAGGAGAAGATACAGGA
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164153974 20 - 169600520 CAGGAGGAGAAGAGGCAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170328501 20 - 171882078 CAGGAGGAGAAGAGGCAGGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254293 20 -  75399963 caggaagagaagatgcatga
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       112685 20 +    138091 CAGGAGGAGAAGATATGGGA
i manLeu1.NW_012101289v1    I 8 C 0
s colAng1.NW_012115722v1      1392057 20 +   5228064 CAGGAGGAGAAGATGCACGA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45529 20 -     60449 caagagaagatgatgcagga
i calJac3.chrUn_GL286477    C 0 C 0
e aotNan1.NW_018512720v1      2613489 147 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851336  0 +  99763055 C
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856  0 -  54856640 C

a score=11858.000000
s hg38.chr15_KI270851v1_alt    109394 7 +    263054 GCAGGAG
s panTro5.chr15               9366346 7 +  83230942 GCAGGAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        10682 7 +    551209 GCGGGAG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164153994 7 - 169600520 GCAGGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170328521 7 - 171882078 ACAGGAG
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254313 4 -  75399963 gcag---
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       112705 7 +    138091 GCAGGAG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1392077 7 +   5228064 GCAGGAG
i colAng1.NW_012115722v1    C 0 C 0
e aotNan1.NW_018512720v1      2613489 147 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851336 0 +  99763055 C
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856 0 -  54856640 C
e calJac3.chrUn_GL286477        45549 0 -     60449 C

a score=10356.000000
s hg38.chr15_KI270851v1_alt    109401 7 +    263054 GAGAAGA
s panTro5.chr15               9366353 7 +  83230942 GAGAAGA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        10689 7 +    551209 GAGAAGA
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154001 7 - 169600520 AAGGAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170328528 7 - 171882078 GAGAAGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254317 7 -  75399963 gagaagt
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392084 7 +   5228064 GAGAAAA
i colAng1.NW_012115722v1    C 0 C 0
e aotNan1.NW_018512720v1      2613489 147 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851336 0 +  99763055 C
e manLeu1.NW_012101289v1       112712 0 +    138091 C
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856 0 -  54856640 C
e calJac3.chrUn_GL286477        45549 0 -     60449 C

a score=4808.000000
s hg38.chr15_KI270851v1_alt    109408 4 +    263054 TGCG
s panTro5.chr15               9366360 4 +  83230942 TGCG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        10696 4 +    551209 TGCG
i gorGor5.CYUI01015853v1    C 0 I 104
s rheMac8.chr7              164154008 4 - 169600520 TGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170328535 4 - 171882078 TGTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254324 4 -  75399963 tgcg
i chlSab2.chr5              C 0 C 0
e aotNan1.NW_018512720v1      2613489 147 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851336 0 +  99763055 C
e colAng1.NW_012115722v1      1392091 0 +   5228064 C
e manLeu1.NW_012101289v1       112712 0 +    138091 C
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856 0 -  54856640 C
e calJac3.chrUn_GL286477        45549 0 -     60449 C

a score=5947.000000
s hg38.chr15_KI270851v1_alt    109412 6 +    263054 GAGGCA
s panTro5.chr15               9366364 6 +  83230942 GAGGCA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        10804 6 +    551209 GGAGCG
i gorGor5.CYUI01015853v1    I 104 C 0
s rheMac8.chr7              164154012 6 - 169600520 GAAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170328539 6 - 171882078 GAGGCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254328 6 -  75399963 ggagca
i chlSab2.chr5              C 0 C 0
e aotNan1.NW_018512720v1      2613489 147 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851336 0 +  99763055 C
e colAng1.NW_012115722v1      1392091 0 +   5228064 C
e manLeu1.NW_012101289v1       112712 0 +    138091 C
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856 0 -  54856640 C
e calJac3.chrUn_GL286477        45549 0 -     60449 C

a score=41916.000000
s hg38.chr15_KI270851v1_alt    109418 65 +    263054 GGAGGAGATGATGTGGGAGAAG------------------GAGGAGAAGATGCGGAGGCAGGAGGAGATGATGTGGGAGAAGG
s gorGor5.CYUI01015853v1        10810 65 +    551209 GGAGGAGAAGATGCAGGAGCGG------------------GAGGAGAAGATGCAGGAGCGGGAGGAGAAGATACGGGAGCAGG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154018 65 - 169600520 GGAGGAGAAGATAAAGGAGCAG------------------GAGGAGAAGATACGGGAGCAGGAAGAGAAGAGGCGGGGGCAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170328545 83 - 171882078 GGAGGAGAAGATACAGGAGCAGGAGAAGATGTGGAGGCAGGAGGAGAAGATATGGGAGCAGGAGGAGAAGATACGGGAGCAGG
i macFas5.chr7              C 0 I 267
s chlSab2.chr5               36254334 65 -  75399963 ggaggagaagatgcgggaggag------------------gaggagaagaggtggaggcaggaggagaagctttgggagcagg
i chlSab2.chr5              C 0 C 0
e aotNan1.NW_018512720v1      2613489 147 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851336  0 +  99763055 C
e panTro5.chr15               9366370  0 +  83230942 C
e colAng1.NW_012115722v1      1392091  0 +   5228064 C
e manLeu1.NW_012101289v1       112712  0 +    138091 C
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856  0 -  54856640 C
e calJac3.chrUn_GL286477        45549  0 -     60449 C

a score=24307.000000
s hg38.chr15_KI270851v1_alt    109483 39 +    263054 AGGAGAAGATGCGGAGGCAGGAGGAGATGATGTGGGAGA
s gorGor5.CYUI01015853v1        10875 39 +    551209 AGGAGAAGATACGGAGGAAGGAGGAGATGATGTGGGAGA
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154083 39 - 169600520 AGGAGAAGATGTGGAGGCAGGAGGAGAAGATACGGGAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170328895 39 - 171882078 AGGAGAAGATGTGGAGGCAGGAGGAGAAGCTGTGGGAGC
i macFas5.chr7              I 267 C 0
s chlSab2.chr5               36254399 36 -  75399963 aggagaagatgtgggagc---aggagaacatgcatgagc
i chlSab2.chr5              C 0 C 0
e aotNan1.NW_018512720v1      2613489 147 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851336  0 +  99763055 C
e panTro5.chr15               9366370  0 +  83230942 C
e colAng1.NW_012115722v1      1392091  0 +   5228064 C
e manLeu1.NW_012101289v1       112712  0 +    138091 C
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856  0 -  54856640 C
e calJac3.chrUn_GL286477        45549  0 -     60449 C

a score=22874.000000
s hg38.chr15_KI270851v1_alt    109522 22 +    263054 AGGAGGAGAAGATGCGGAGGCT
s panPan2.chr15              25851336 22 +  99763055 AGGAGGAGAAGATGCGGAGGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        10914 22 +    551209 AGGAGGAGAAGATGCGGAGGCA
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154122 22 - 169600520 AGGAGGAGAAGATACATGAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170328934 22 - 171882078 AGGAGGAGATGATGCAGGAGCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254435 22 -  75399963 aggaggagaaaatatgggagca
i chlSab2.chr5              C 0 C 0
e aotNan1.NW_018512720v1      2613489 147 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panTro5.chr15               9366370  0 +  83230942 C
e colAng1.NW_012115722v1      1392091  0 +   5228064 C
e manLeu1.NW_012101289v1       112712  0 +    138091 C
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856  0 -  54856640 C
e calJac3.chrUn_GL286477        45549  0 -     60449 C

a score=108649.000000
s hg38.chr15_KI270851v1_alt    109544  85 +    263054 GGAG------------------------------------GAGATGATGTGGGAGAAGGAGGAGAAGATACGGGAGCTGGAAGAGAAGATGCACGAGC---------------------------------------------AGGAGAAGATACGGGAGCAGGAA
s panTro5.chr15               9366370  85 +  83230942 GGAG------------------------------------GAGATGATGTGGGAGAAGGAGGAGAAGATACGGGAGCTGGAAGAGAAGATGCACGAGC---------------------------------------------AGGAGAAGATACGGGAGCAGGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25851358  85 +  99763055 GGAG------------------------------------GAGATGATGTGGGAGAAGGAGGAGAAGATACGGGAGCTGGAAGAGAAGATGCACGAGC---------------------------------------------AGGAGAAGATACGGGAGCAGGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        10936  85 +    551209 GGAG------------------------------------GAGATGATTTGGGAGAAGGAGGAGAAGATACGGGAGCTGGAAGAGAAGATGCACGAGC---------------------------------------------AGGAGAAGATACGGGAGCAAGAA
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154144  85 - 169600520 GGAG------------------------------------GAGAAGACACGGGAGCAGGAGAAGAAGAGGCAGGAGCAGGAGAAGAAGATGTGGAGGC---------------------------------------------AGGAGAAGATGCATGAGAAGGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170328956 166 - 171882078 GGAGAAGAAGGAGCAGGAGGAGAAGATATGGAGGCAGGAAGAGAAGATGCGGGAGCAGGAGGAGAAGATGCGGGAGCAGGAGGAGAAGATGTGGAGGCAGGAGGAGAAGCTGTGGGAGCAGGAGGAGAAGCTGTGGGAGCAGGAGGAGAAGATGCGGGAGCAGGAG
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254457  82 -  75399963 g---------------------------------------gagaagatgtggaggcaggaggagaagatgcgggagcaggaggagaagatacgggagc---------------------------------------------atgagaagatgtggaggcaggag
i chlSab2.chr5              C 0 C 0
e aotNan1.NW_018512720v1      2613489 147 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1392091   0 +   5228064 C
e manLeu1.NW_012101289v1       112712   0 +    138091 C
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856   0 -  54856640 C
e calJac3.chrUn_GL286477        45549   0 -     60449 C

a score=26711.000000
s hg38.chr15_KI270851v1_alt    109629 14 +    263054 GAGAAGAGGCAGGA
s panTro5.chr15               9366455 14 +  83230942 GAGAAGAGGCAGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25851443 14 +  99763055 GAGAAGAGGCAGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11021 14 +    551209 GAGAAGAGGCAGGA
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154229 14 - 169600520 GAGAAGATGCATGA
i rheMac8.chr7              C 0 I 3
s macFas5.chr7              170329122 14 - 171882078 GAGGAGATGTGGGA
i macFas5.chr7              C 0 I 3
s chlSab2.chr5               36254539 14 -  75399963 gagaaactgtggga
i chlSab2.chr5              C 0 I 3
s manLeu1.NW_012101289v1       112712 14 +    138091 GAGAAGAGGCAGGA
i manLeu1.NW_012101289v1    C 0 M 1158
e aotNan1.NW_018512720v1      2613489 147 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1392091  0 +   5228064 C
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856  0 -  54856640 C
e calJac3.chrUn_GL286477        45549  0 -     60449 C

a score=231328.000000
s hg38.chr15_KI270851v1_alt    109643 175 +    263054 GGAGGAGAAGATACGCGAGCAGGAGAAGA---GGCAGGAGCAGGAGGCGAAGATGTGGAGGCAGGAGGAGAAGATACGGGAGCAGGAAGAGAAGATACGGGAGCAGGAGAAAAAGATGTGGAGGCAGGAGGAGAAGATTCACGAGCA---GGAGAAGATACGGG---AGGAGGAGAAGAGGCAG
s panTro5.chr15               9366469 175 +  83230942 GGAGGAGAAGATACGCGAGCAGGAGAAGA---GGCAGGAGCAGGAGGCGAAGATGTGGAGGCAGGAGGAGAAGATATGGGAGCAGGAGGAGAAGATACGGGAGCAGGAGAAAAAGATGTGGAGGCAGGAGGAGAAGATTCACGAGCA---GGAGAAGATACGGG---AGGAGGAGAAGAGGCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25851457 175 +  99763055 GGAGGAGAAGATACGCGAGCAGGAGAAGA---GGCAGGAGCAGGAGGCGAAGATGTGGAGGCAGGAGGAGAAGATATGGGAGCAGGAGGAGAAGATACGGGAGCAGGAGAAAAAGATGTGGAGGCAGGAGGAGAAGATTCACGAGCA---GGAGAAGATACGGG---AGGAGGAGAAGAGGCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11035 156 +    551209 GCAGGAGAACATACGCGAGCAGGAGAAGA---GGCAGGAGCAGGAGGCGAAGATGCGGAGGCAGGAGGAGAAGATGTGGGAGAAGCAGGAGAAGATACGGGA---------------------GCTGGAGGAGAAGATGCACGAGCA---GAAGAAGATACGGA-GCAAGAAGAGAAGAGACAG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154246 184 - 169600520 GGAGGAGAAGATACGGGAGCAGGAGAACAGGAGGCAGGAGCAGGAAGAGAAGATTTGGAGGCAAGAGGAGAAGATACGGGAGCAGGAGAAGAAGATGCATGATCAGGAGGAGAAGATAAGGGAGCAGGAGAAGAAGATGCACAAGCAGGAGGAGAAGATACCAGAGCAGAAGAAGAAGAGGCAA
i rheMac8.chr7              I 3 C 0
s macFas5.chr7              170329139 184 - 171882078 GGAGGAGAGGATTCGGGAACAGGAGGAAAAGATGCAGAGGCAGGAGGAGAAGATGTGGGAGCAGGAGGAGAAGATGTGGAGGCAGGAGGAGAAGCTGTGGGAGCAGGAGGAGAAGATGCGGGAGCAGGAGGAGAAGATGCGGGAGCAGGAGGAGGAGATGTGGGAGCAGGAGGAGAAGATTCGG
i macFas5.chr7              I 3 C 0
s chlSab2.chr5               36254556 178 -  75399963 ggaggagatgatgcgggagtaggagaaga------aggagcaggaggagaagatatggaggaaggagaagaagctgtggaggcaggaggagaagatgcgagagcagggggagaagctgcggtagcaggaggagaagctgttggagcaggtggagaagctgtggaggcaggaggagaagatgcga
i chlSab2.chr5              I 3 C 0
e aotNan1.NW_018512720v1      2613489 147 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1392091   0 +   5228064 C
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e cerAty1.NW_012002601v1      1549083   6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856   0 -  54856640 C
e calJac3.chrUn_GL286477        45549   0 -     60449 C

a score=39387.000000
s hg38.chr15_KI270851v1_alt    109818 21 +    263054 GAGCAGGAGG---AGATGTGGAGG
s panTro5.chr15               9366644 21 +  83230942 GAGCAGGAGG---AGATGTGGAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25851632 21 +  99763055 GAGCAGGAGG---AGATGTGGAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11191 21 +    551209 GAGCAGGAGG---AGATGTGGAGG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154430 24 - 169600520 GAGCAGGAGAAGAAGATGTGGAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170329323 24 - 171882078 GAACAGGAGGAAAAGATGCAGAGG
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254734 24 -  75399963 gagcaggaagagaagatgcgggag
i chlSab2.chr5              C 0 C 0
s aotNan1.NW_018512720v1      1164144 21 -   3863790 GAGCAGGAGG---AGATTTGCAAG
i aotNan1.NW_018512720v1    n 147 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1392091  0 +   5228064 C
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856  0 -  54856640 C
e calJac3.chrUn_GL286477        45549  0 -     60449 C

a score=102798.000000
s hg38.chr15_KI270851v1_alt    109839 70 +    263054 CAGGAGGAGAAGATAAGGGAGCAGGAGG---AGATATGGAGGCAAAAGGAGAAGATGCACGAGCAGGAGAAG---A
s panTro5.chr15               9366665 73 +  83230942 CAGGAGGAGAAGATAAGGGAGCAGGAGG---AGATATGGAGGCAAAAGGAGAAGATGCACGAGCAGGAGGAGAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25851653 73 +  99763055 CAGGAGGAGAAGATAAGGGAGCAGGAGG---AGATATGGAGGCAAAAGGAGAAGATGCACGAGCAGGAGGAGAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11212 60 +    551209 CAGGAGGAGAAGATAAGGGAGCAGGAGG---AGATATGGAGGCAAAAGGAGAAGATGCACGAG-------------
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154454 76 - 169600520 CAGGAGAAGAAGATACGGGAGCAGGAGGAGAAGATGCACAATCAGGAGGAGAAGATACGGGAGCAGGAGGAGAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170329347 76 - 171882078 CAGGAGGAGAAGATGTGGGAGCAGGAGGAGAAGATGTGGAGGCAGGAGGAGATGATGCGGGAGCAGGAGAAGAAGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254758 76 -  75399963 caggaggagaagatgtgggagcaggaggagaagatatggaggcaggaagagaagatgcatgagcaggaggagaaga
i chlSab2.chr5              C 0 C 0
e aotNan1.NW_018512720v1      1164165  0 -   3863790 C
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1392091  0 +   5228064 C
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856  0 -  54856640 C
e calJac3.chrUn_GL286477        45549  0 -     60449 C

a score=26532.000000
s hg38.chr15_KI270851v1_alt    109909 18 +    263054 TACGGAAGCAGGAGGAGA
s panTro5.chr15               9366738 18 +  83230942 TACGGAAGCAGGAGGAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25851726 18 +  99763055 TACGGAAGCAGGAGGAGA
i panPan2.chr15             C 0 T 308
s rheMac8.chr7              164154530 18 - 169600520 TGCATGAGCAGGAGAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170329423 18 - 171882078 TGTGGGAGCAGGAGGAGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254834 18 -  75399963 tgcgagagaaagaggaga
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392091 18 +   5228064 TATGGGAGCAGGAGGAGA
i colAng1.NW_012115722v1    C 0 C 0
e aotNan1.NW_018512720v1      1164165  0 -   3863790 C
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1        11272  0 +    551209 C
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856  0 -  54856640 C
e calJac3.chrUn_GL286477        45549  0 -     60449 C

a score=20400.000000
s hg38.chr15_KI270851v1_alt    109927 32 +    263054 AGGTGTGGAGGCAGGAGGAGAAGATGCACGAC
s panTro5.chr15               9366756 32 +  83230942 AGGTGTGGAGGCAGGAGGAGAAGATGCACGAC
i panTro5.chr15             C 0 C 0
s rheMac8.chr7              164154548  8 - 169600520 ------------------------TACATGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170329441 32 - 171882078 AGATGTGCAGGCAGGAGGAGAAGCTGCAGGAC
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254852 32 -  75399963 agatgcgggagcaggaggagaagttgcgggag
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392109 32 +   5228064 AGATGTGGAGGCAGGAAGAGAAGATGCATGAG
i colAng1.NW_012115722v1    C 0 C 0
e aotNan1.NW_018512720v1      1164165  0 -   3863790 C
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851744 308 +  99763055 T
e gorGor5.CYUI01015853v1        11272  0 +    551209 C
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856  0 -  54856640 C
e calJac3.chrUn_GL286477        45549  0 -     60449 C

a score=34895.000000
s hg38.chr15_KI270851v1_alt    109959 18 +    263054 CAGGAGGAGAAGA---------------------TACGG
s panTro5.chr15               9366788 18 +  83230942 CAGGAGGAGAAGA---------------------TACGG
i panTro5.chr15             C 0 I 147
s gorGor5.CYUI01015853v1        11272 18 +    551209 CAGGAGGAGAAGA---------------------TACGG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154556 18 - 169600520 CAGGAGGAGACCA---------------------TAAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170329473 39 - 171882078 CAGGAGGAGAAGATGTGGAGGCAGGAGGTGAAGCTACGG
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254884 18 -  75399963 caggaggagaaga---------------------tgcgg
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392141 18 +   5228064 CAGGAGGAGAAGA---------------------TACGG
i colAng1.NW_012115722v1    C 0 C 0
s aotNan1.NW_018512720v1      1164165 18 -   3863790 CAGGAGGAGAAGA---------------------TACAG
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851744 308 +  99763055 T
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e cerAty1.NW_012002601v1      1549083  6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856  0 -  54856640 C
e calJac3.chrUn_GL286477        45549  0 -     60449 C

a score=1883.000000
s hg38.chr15_KI270851v1_alt    109977 1 +    263054 G
s panTro5.chr15               9366953 1 +  83230942 G
i panTro5.chr15             I 147 C 0
s gorGor5.CYUI01015853v1        11290 1 +    551209 A
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154574 1 - 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170329512 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36254902 1 -  75399963 g
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392159 1 +   5228064 G
i colAng1.NW_012115722v1    C 0 C 0
s aotNan1.NW_018512720v1      1164183 1 -   3863790 G
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851744 308 +  99763055 T
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e cerAty1.NW_012002601v1      1549083 6 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856 0 -  54856640 C
e calJac3.chrUn_GL286477        45549 0 -     60449 C

a score=48212.000000
s hg38.chr15_KI270851v1_alt    109978 19 +    263054 AGCAGGAGGAGAAGATGTG
s panTro5.chr15               9366954 19 +  83230942 AACAGGAGGAGAAGATGCG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11291 19 +    551209 AGCAGGAGGAGAAGGTGTG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154575 19 - 169600520 AGCAGGAGGAGAAGATGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170329513 19 - 171882078 AGCAGGAAGAGAAGATGTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1549089 19 +   1584492 agcaggaggagaagatatg
i cerAty1.NW_012002601v1    I 6 C 0
s chlSab2.chr5               36254903 19 -  75399963 agcaggaggagaagatatg
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392160 16 +   5228064 ---AGCAGGAGAAGATGTG
i colAng1.NW_012115722v1    C 0 C 0
s aotNan1.NW_018512720v1      1164184 19 -   3863790 AGGAGGAGCAGAAGACATG
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851744 308 +  99763055 T
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10488856  0 -  54856640 C
e calJac3.chrUn_GL286477        45549  0 -     60449 C

a score=3696.000000
s hg38.chr15_KI270851v1_alt    109997 2 +    263054 GA
s panTro5.chr15               9366973 2 +  83230942 GA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11310 2 +    551209 GA
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154594 2 - 169600520 CA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170329532 2 - 171882078 GG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1549108 2 +   1584492 gg
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36254922 2 -  75399963 ga
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392176 2 +   5228064 GA
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10488856 2 -  54856640 GG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      1164203 2 -   3863790 GG
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851744 308 +  99763055 T
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e calJac3.chrUn_GL286477        45549 0 -     60449 C

a score=808.000000
s hg38.chr15_KI270851v1_alt    109999 1 +    263054 G
s panTro5.chr15               9366975 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11312 1 +    551209 G
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170329534 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1549110 1 +   1584492 a
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36254924 1 -  75399963 g
i chlSab2.chr5              C 0 C 0
s saiBol1.JH378108           10488858 1 -  54856640 A
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      1164205 1 -   3863790 G
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851744 308 +  99763055 T
e colAng1.NW_012115722v1      1392178 0 +   5228064 C
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154596 0 - 169600520 C
e calJac3.chrUn_GL286477        45549 0 -     60449 C

a score=106639.000000
s hg38.chr15_KI270851v1_alt    110000 46 +    263054 GCAGGAGGAGAAGATAAGGGAGCAGGAGGAGAAGATACGGGAGCAG
s panTro5.chr15               9366976 46 +  83230942 GCAGGAGGAGAAGATAAGGGAGCAGGAGGAGAAGATACAAGAGCAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11313 46 +    551209 GAAGGAGGAGAAGATAAGGGAGCAGGAGGAGAAGGTGTGGAGGCAG
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170329535 46 - 171882078 GCAGGAGAAGATGATGCAGGAACAGGAAGAGAAGATGTGGAGGCAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1549111 46 +   1584492 gcaggaggagaagaggcaggagcaggaggagaagatatggaggcag
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36254925 46 -  75399963 gcaggaagagaagatgcatcagcaggaggagaagatgcgggagcag
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392178 26 +   5228064 --------------------GGCAGGAGGAGAAGCTGTGGGAGCAG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45549 46 -     60449 gtgggagcagaaaatatgggagcaagaacaaaagatgcagcagcag
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10488859 46 -  54856640 GCAGCAGTACAAGATTCTGGAGCAGCAGCAGAAGATCTGGGAACAG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      1164206 46 -   3863790 GCAGCAAGAGAAGATGTGGGAGCAGGAGCAGAAGATACGGGAGCAG
i aotNan1.NW_018512720v1    C 0 I 905
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851744 308 +  99763055 T
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154596  0 - 169600520 C

a score=41143.000000
s hg38.chr15_KI270851v1_alt    110046 38 +    263054 GAGGAGAAGATACGAGAGCAGGAGGAGATGATGCAGGA------
s panTro5.chr15               9367022 38 +  83230942 GAGGAGATGATGCAGGAACAGGAAGAGAAGATGGGGGA------
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11359 38 +    551209 GAGGAGAAGATACGGGAGGAGGAGGAGGAGAGGCAGGA------
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170329581 38 - 171882078 GAGGAGAAGATGTGGAGGCAGGAGGAGAAGATGCAGGA------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1549157 35 +   1584492 gaggagaagatagaggagc---aggagaagatgtggag------
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36254971 38 -  75399963 gaggagaagatgcgagagcaggaggagaagatgcgaga------
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392204 28 +   5228064 GAGGAGATGATGCGGGAGC---AGGAGAAGA-------------
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45595 43 -     60449 gagcagaaAATATGGGAGCAGGAAGAAAAT-TGCAGGAGCAGGA
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10488905 21 -  54856640 AAGCACAAAATCTGTAAGCAG-----------------------
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018512720v1      1164252 905 -   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851744 308 +  99763055 T
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154596  0 - 169600520 C

a score=81560.000000
s hg38.chr15_KI270851v1_alt    110084 69 +    263054 ACAGGAAGAGAAGATGGGGGAGCAGGAAGAGAAGATGCAAGAACAGGAGAAGA---TGCGGAGGCAGGAGGA
s panTro5.chr15               9367060 69 +  83230942 GCAGGAGGAGAAGATGTGGGAGCAGGAAGAGAAGATGCAAGAACAGGAGAAGA---TGCGGAGGCAGGAGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25851436 66 +  99763055 GCAGGAAGAGAAGA---GGCAGGAGGAGGAGAAGATACGCGAGCAGGAGAAGA---GGCAGGAGCAGGAGGC
i panPan2.chr15             T 308 C 0
s gorGor5.CYUI01015853v1        11397 47 +    551209 GCAGGAGGATAAGATGTGGAAGCAGGAGGAGAAGATGCAAGTACAGG-------------------------
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170329619 72 - 171882078 GCAGGAGGAGAAGATGCGGGAGCAGGAGGAGCAGATGCGGGAGCAGGAGGAGGAGATGTGGGAGCAGGAGGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1549192 72 +   1584492 gcaggaggagaagatagaggagcaggaggataagatgtggaggcaggaggagaagatagaggagcaggagca
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36255009 71 -  75399963 gca-gaggagaagatgtgggagcaggaggagaagatgtggaggcaggagaagaagctgtggaggcaggagga
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392232 45 +   5228064 -----------------AGGAGCAGGAGGAGAAGATGTGGAGGCAGGAGGAGAACCTGTGGG----------
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45638 72 -     60449 GCAGGAACAAAATATGCAGCATCTGGAGCAGAAGATTCGGGAGCATGAACAGAAGATGCAGCATCAGGAGCA
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10488926 26 -  54856640 -----------------------TGG-----------------------CACAAGATGCAGGAACAGGTGCA
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018512720v1      1164252 905 -   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154596  0 - 169600520 C

a score=23793.000000
s hg38.chr15_KI270851v1_alt    110153 11 +    263054 GAAGATAAGGG
s panTro5.chr15               9367129 11 +  83230942 GAAGATAAGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25851502 11 +  99763055 GAAGATGTGGA
i panPan2.chr15             C 0 C 0
s macFas5.chr7              170329691 11 - 171882078 GAAGATTCGGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1549264 11 +   1584492 gaagatgcggg
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36255080 11 -  75399963 gaagataccgg
i chlSab2.chr5              C 0 C 0
s calJac3.chrUn_GL286477        45710 11 -     60449 GAAGATGAGGG
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10488952 11 -  54856640 CAAGATGCTGG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2613636 11 +   3863790 GAAGATACGGG
i aotNan1.NW_018512720v1    I 147 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1        11444  0 +    551209 C
e colAng1.NW_012115722v1      1392277  0 +   5228064 C
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154596  0 - 169600520 C

a score=75842.000000
s hg38.chr15_KI270851v1_alt    110164 27 +    263054 AGCAGGAGGAGAAGATACGGGAGCAGA
s panTro5.chr15               9367140 27 +  83230942 AGCAGGAGGAGAAGATACGGGAGCAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25851513 27 +  99763055 GGCAGGAGGAGAAGATATGGGAGCAGG
i panPan2.chr15             C 0 I 1457
s rheMac8.chr7              164154596 27 - 169600520 AGCAGGAGGAGAAGATACGGGAGCAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170329702 27 - 171882078 AACAGGAGGAAAAGATGCAGAGGCAGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1549275 27 +   1584492 agcgggaggagaagacgtggaggcagg
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36255091 27 -  75399963 agcaggaggagaagctgcgggagcagg
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392277 27 +   5228064 AGCAGGAGGAGAAGATGCAGGAGCAGG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45721 27 -     60449 AGCACGAACAGAAAATGCAAAGGCAAG
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10488963  6 -  54856640 A---------------------GCAGC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2613647 27 +   3863790 AGCAGGAGCAGAAGATGCGGGAGTAGG
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e gorGor5.CYUI01015853v1        11444  0 +    551209 C
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=70745.000000
s hg38.chr15_KI270851v1_alt    110191 34 +    263054 AGGAGAAGATACGAGA-GC-AGGAGGAGAAGATATG
s panTro5.chr15               9367167 14 +  83230942 AGGAGAAGATACGA----------------------
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11444 34 +    551209 AGGAGAAGATGCAGAG-GC-AGGAGGAGAAGATAAG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154623 34 - 169600520 AGAAGAAGAGGCAGGA-GC-AGGAGGAGAAGATGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170329729 34 - 171882078 AGGAGAAGATGTGGGA-GC-AGGAGGAGAAGATGTG
i macFas5.chr7              C 0 I 279
s cerAty1.NW_012002601v1      1549302 34 +   1584492 aggagaagatgcggga-gc-aggaggagatgatacg
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36255118 34 -  75399963 aggtgaagctgttgga-ac-aggaggctaagctgtg
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392304 34 +   5228064 AGGAGAAGATGTGGAG-GC-AGGAGGAGAAGCTGTG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45748 36 -     60449 AGGAGAAGATTCGGGACACAAGAAACAGAAGATTTA
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10488969 34 -  54856640 AGGAGGAGATCCGGGA-AC-AGGAGCAGAAAATCCG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2613674 34 +   3863790 AGGAGAGGATGCAGGA-GT-GGGAGCAGATGATGTG
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851540 1457 +  99763055 I
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=118635.000000
s hg38.chr15_KI270851v1_alt    110225 34 +    263054 GGAGCAGGAGGAGAAGATACGAGAGCAGGAGGAG
s panTro5.chr15               9367181 33 +  83230942 -GAGCAGGAGGAGAAGATACGAGAGCAGGAGGAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11478 34 +    551209 GGAGCAGGAGGAGAAGATACGAGAGCAGGAGGAG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154657 34 - 169600520 GAGGCAGGAGGAGAAGATACGGGAGCAGGAGGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170330042 28 - 171882078 ------GGAGGAGAAGATGTGGAGGCAGGAGGAG
i macFas5.chr7              I 279 C 0
s cerAty1.NW_012002601v1      1549336 34 +   1584492 ggagcaggagaagaagatctgggagcaggagaag
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36255152 34 -  75399963 gaggcaggaggagaagatgcgagagcaggaggag
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392338 34 +   5228064 GGAGCAGGAGGAGAAGATGTGGGAGCAGGAGGAG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45784 33 -     60449 GGAGCAGGAGGAAAACAT-TGGGAGCAGAAGAGG
i calJac3.chrUn_GL286477    C 0 T 210
s saiBol1.JH378108           10489003 34 -  54856640 TGAGCAGGTGCACAAGATGCTGGAGCAGCAGGAG
i saiBol1.JH378108          C 0 I 3
s aotNan1.NW_018512720v1      2613708 34 +   3863790 GGAGTGGGAGGAGAAGATGAGGGAGCAAGAGCAG
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851540 1457 +  99763055 I
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I

a score=24121.000000
s hg38.chr15_KI270851v1_alt    110259 10 +    263054 ATGATGCAGG
s panTro5.chr15               9367214 10 +  83230942 ATGATGCAGG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11512 10 +    551209 ATGATGGAGG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154691 10 - 169600520 AAGATGCATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170330070 10 - 171882078 ATGATGCGGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1549370 10 +   1584492 atgatgcagg
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36255186 10 -  75399963 aagatgcggg
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392372 10 +   5228064 AAGATGTGGA
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10489040 10 -  54856640 AAGACACTGG
i saiBol1.JH378108          I 3 C 0
s aotNan1.NW_018512720v1      2613742 10 +   3863790 AAGATGTGGG
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e panPan2.chr15              25851540 1457 +  99763055 I
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e calJac3.chrUn_GL286477        45817 210 -     60449 T

a score=82793.000000
s hg38.chr15_KI270851v1_alt    110269 22 +    263054 AACAGGAAGAGAAGATGTGGGA
s panTro5.chr15               9367224 22 +  83230942 AACAGGAAGAGAAGATGGGGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25852997 22 +  99763055 AACAAGAGGAGAAGATGTGGAG
i panPan2.chr15             I 1457 C 0
s gorGor5.CYUI01015853v1        11522 21 +    551209 AACAGGAAGAGAAGATG-GGGA
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154701 22 - 169600520 AGCAGGAGGAGAAGATAAGGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              170330080 22 - 171882078 AGCAGGAGAAGAAGATGTGGGA
i macFas5.chr7              C 0 I 170
s cerAty1.NW_012002601v1      1549380 22 +   1584492 agcaggaggagaagatgtggga
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36255196 22 -  75399963 agcaggaggagaagatgtggag
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392382 22 +   5228064 GACAGGAGGAGAAGATGCGGGA
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10489050 22 -  54856640 AGCAGCAGGAGAAGATCCGGGA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2613752 22 +   3863790 AGCAGGAAGAAAAGATGTGGGA
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e calJac3.chrUn_GL286477        45817 210 -     60449 T

a score=54189.000000
s hg38.chr15_KI270851v1_alt    110291 16 +    263054 GCAGGAGGAGAAGATG
s panTro5.chr15               9367246 16 +  83230942 GCAGGAGGAGAAGATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25853019 16 +  99763055 GCAGGAGGAGAAGATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11543 16 +    551209 GCAGGAGGAGAAGATG
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154723 16 - 169600520 GCAGGAGGAGAAGATG
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1549402 16 +   1584492 gcaggaggagaagatg
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36255218 16 -  75399963 gcaggaggagaagctg
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392404 16 +   5228064 GCAGGAGGAGGAGATG
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10489072 16 -  54856640 AGAGGAGCACAAAATC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2613774 16 +   3863790 GCAGGAGCAGAAGATG
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e calJac3.chrUn_GL286477        45817 210 -     60449 T
e macFas5.chr7              170330102 170 - 171882078 I

a score=6108.000000
s hg38.chr15_KI270851v1_alt    110307 4 +    263054 TGTG
s panTro5.chr15               9367262 4 +  83230942 TGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25853035 4 +  99763055 TGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11559 4 +    551209 TATA
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154739 4 - 169600520 CATG
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1549418 4 +   1584492 tggg
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36255234 4 -  75399963 cggg
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392420 4 +   5228064 TGGG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45607 4 -     60449 TGGG
i calJac3.chrUn_GL286477    T 210 C 0
s aotNan1.NW_018512720v1      2613790 4 +   3863790 TGAA
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10489088 0 -  54856640 C
e macFas5.chr7              170330102 170 - 171882078 I

a score=64148.000000
s hg38.chr15_KI270851v1_alt    110311 16 +    263054 AGCAGGAAGAGAAGAT
s panTro5.chr15               9367266 16 +  83230942 AGCAGGAAGAGAAGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25853039 16 +  99763055 AGCAGGAAGAGAAGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11563 16 +    551209 AGCAGGAAGAGAAGAT
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7              164154743 16 - 169600520 AGCAGGAGGAGAAGAT
i rheMac8.chr7              C 0 I 61851
s macFas5.chr7              170330272 13 - 171882078 ---AGGAGGAGAAGAT
i macFas5.chr7              I 170 I 3
s cerAty1.NW_012002601v1      1549422 16 +   1584492 aacaggaagagaagat
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36255238 16 -  75399963 agcaggaggagaagat
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392424 16 +   5228064 AGCAGGAGGAGAGGAT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45611 14 -     60449 AGCAGGA--AGAAAAT
i calJac3.chrUn_GL286477    C 0 C 0
s aotNan1.NW_018512720v1      2613794 16 +   3863790 GGCAAGAGGAGAAGAT
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e saiBol1.JH378108           10489088  0 -  54856640 C

a score=61471.000000
s hg38.chr15_KI270851v1_alt    110327 24 +    263054 G-------CAAGAACAGGAGGAGAAGATGC----------------G
s panTro5.chr15               9367282 24 +  83230942 G-------CAAGAACAGGAGGAGAAGATGC----------------G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25853055 24 +  99763055 G-------CAAGAACAGGAGGAGAAGATGC----------------G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11579 23 +    551209 G-------CAGGAACAGGAGGAGAAGATGC-----------------
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170330288 37 - 171882078 ----------GGAGAAGGAGGAGAAGATGCGGAGGCAGGAGGAGAAG
i macFas5.chr7              I 3 C 0
s cerAty1.NW_012002601v1      1549438 24 +   1584492 g-------caggaacaggaggagaagatgc----------------g
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36255254 24 -  75399963 g-------cgagagcaggaggagaagatgc----------------g
i chlSab2.chr5              C 0 I 2063
s colAng1.NW_012115722v1      1392440 24 +   5228064 T-------CAGGAACAGGAGGAAAAGATGC----------------A
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45625 31 -     60449 TGCAGGAGCAGGAGCAGGAACAAAATATGC----------------A
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10489088 23 -  54856640 --------CGTGAGCAGTGGCACAAGATGC----------------A
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2613810 24 +   3863790 T-------CAGGGACAGGAGGAGAAGATGA----------------G
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=99107.000000
s hg38.chr15_KI270851v1_alt    110351 30 +    263054 GAGGCAGGAGGAGAAGATGTGGGAGCAGGA
s panTro5.chr15               9367306 30 +  83230942 GAGGCAGGAGGAGAAGATGCGGGAGCAGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25853079 30 +  99763055 GAGGCAGGAGGAGAAGATGCGGGAGCAGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11602 10 +    551209 --------------------GGGAGCAGGA
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170330325 30 - 171882078 GAGGCAGGAGGAGAAGATGCGGGAGCAGGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1549462 30 +   1584492 gaggcaggaggagaagatgcgggagcagga
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36257341 30 -  75399963 gaggcaggaggagaagatgtgggagcagga
i chlSab2.chr5              I 2063 C 0
s colAng1.NW_012115722v1      1392464 30 +   5228064 GAGGCAGGAGGAGAAGATGTGGGAGCAGGA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45656 30 -     60449 GCATCTGGAGCAGAAGATTCGGGAGCATGA
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10489111 30 -  54856640 GGAACAGGTGCACAAGATGCTGGAGCAGCA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2613834 30 +   3863790 GGGACAGGAACAGAAGATTCAGGAGCAGGA
i aotNan1.NW_018512720v1    C 0 I 694
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=104383.000000
s hg38.chr15_KI270851v1_alt    110381 41 +    263054 AGTGAGGCTGCGGCAGCAGGAGGAGAAGATGCAGGAACACC
s panTro5.chr15               9367336 41 +  83230942 AGTGAGGCTGTGGCAGCAGGAGAAGAAGATGCAGGAACAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25853109 41 +  99763055 AGTGAGGCTGTGGCAGCAGGAGGAGAAGATGCAGGAACAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11612 41 +    551209 AGTGAGGCTGCGGCAGCAGGAGGAGAAGATGCAGGAACAGG
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170330355 41 - 171882078 GTCGAGGCTGTGGCAGCAGGAGAAGAAGATGCAGGAGCAGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1549492 41 +   1584492 agtgaggctgcgagagcaggaggagaagatgcaggagcagg
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36257371 41 -  75399963 agtgaggctgcaggagcaggaggagaagatgcaggagcagg
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392494 41 +   5228064 AGTGAGGCTGCAGGAGCAGGAAGAGAAGATGCAGGAGCAGG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        45686 41 -     60449 ACAGAAGATGCAGCATCAGGAGCAGAAGATGAGGGAGCACG
i calJac3.chrUn_GL286477    C 0 I 1193
s saiBol1.JH378108           10489141 33 -  54856640 GGAGAAGAT------CTGGGAGCAGGAGGTGAGG--CTACG
i saiBol1.JH378108          C 0 I 1
e aotNan1.NW_018512720v1      2613864 694 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=159708.000000
s hg38.chr15_KI270851v1_alt    110422 67 +    263054 AGGTGAGGCTGCAGGAGCTGGAGGAGA---------GGCTGGGGAAGCTGGGGCAGAAGGTCGAGCTCTTGGGGGG
s panTro5.chr15               9367377 67 +  83230942 AGGTGAGGCTGCAGGAGCTGGAGGAGA---------GGCTGGGGAAGCTGGGGCAGAAGGCCGAGCTCTTGGGGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25853150 67 +  99763055 AGGTGAGGCTGCAGGAGCTGGAGGAGA---------GGCTGGGGAAGCTGGGGCAGAAGGCCGAGCTCTTGGGGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        11653 67 +    551209 AGGTGAGGCTGCAGGAGCTGGAGGAGA---------GGCTGGGGAAGCTGAGGCAGAAGGCCGAGCTCTTGAGGGG
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170330396 65 - 171882078 AGGTGAGGCTGCAGGAGCTGGAGGAGA---------GGCTGGGGGAGCTGGGGCGGAAGGCCGAGCTTTGG--GGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1549533 74 +   1584492 aggtgaggctacaggaactggaggagaggctgggggggctgggggagctggggcagaaggacgagCTCTGG--GGG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36257412 66 -  75399963 aggtgaagctgcaggagctggaggaga---------ggctgggggagCTGGGGCTGAAGGCCGAGCTCTGG-AGGG
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392535 66 +   5228064 AGGTGAAGCTGCAGGAGCTGGACGAGA---------GGCTGGGGGAGCTGGGGCGGAAGGCTGAGATCTGG-GGGG
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10489175 51 -  54856640 -------------GGAGCTGAAGGAGA---------CGCTATGGGAACTGCGGTGGAAGGCCGAGCTCTAGGC---
i saiBol1.JH378108          I 1 C 0
e aotNan1.NW_018512720v1      2613864 694 +   3863790 I
e cebCap1.NW_016107859v1       801326 903 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=185565.000000
s hg38.chr15_KI270851v1_alt    110489 56 +    263054 AGCAGGCGGAGGTGTGTGCAAACCCTGGAGATCATACAGAACGACCTCACCACAAC
s panTro5.chr15               9367444 56 +  83230942 AGCAGGCGGAGGTGCATGCAAACCCTGGAGATCATACAGAACGACCTCACCACAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25853217 56 +  99763055 AGCAGGCGGAGGTGCATGCAAACCCTGGAGATCATACAGAACGACCTCACCACAAC
i panPan2.chr15             C 0 I 354
s gorGor5.CYUI01015853v1        11720 56 +    551209 AGCAGGCAGAGGTGCGTGCAAACCCTGGAGATCATACAGAACAAACTCACCACAAC
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170330461 56 - 171882078 AGCAGGCGGAGGTGGTTGCAAACCCTGGAGATCATACAGAACGACCTCACCACAAC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1549607 56 +   1584492 AGCAGGCAGAGGTGGGTGCAAACCCTGGAGATCATACACAACGACCTCACCACAAC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36257478 56 -  75399963 AGCCGGTGGAGGCGTGTGCAAACCATGGAGATCATACAGAACGATCTCACCACAAA
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392601 56 +   5228064 AGCAGGTGGAGGCATGTGCAAACCATGGAGATCATACAGAACGACCTCACCACAAA
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10489226 56 -  54856640 AGCAGGCACAGGCATGTGCAAACCCCGGAGACCATGCAGGTCGACCTCATCACGAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       802229 56 -   1271737 AGCAGGCACAGGCGTGTGCAAACCCTGGACACCCTGTAGGTCGACCTCATCACAAC
i cebCap1.NW_016107859v1    I 903 C 0
e aotNan1.NW_018512720v1      2613864 694 +   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=1152411.000000
s hg38.chr15_KI270851v1_alt    110545 354 +    263054 TTAGCAGATGGTGGTTGGCTCCCTCTGCTTTTCCACCAGTCTGTGGCCTACAGTTTAAATGGTGGGAAGAAGGGTGTGAGATTTGAGGCTGGGGAGGGAGGCATGGGCCTCTAGGCAAGGGAGGCAGTCATTTAggcctggaggaaggggcca-gggccaggggcctgggtaggcgacagagccCCGCAGTGCCCTCACTACCCTGTTTATGGGCCC--AGAATCTGGAAGCCAGCCACTACCTACCCTGACGCCTA------TCCTGCAGGTGGAGCTGAAGAGCCAAGAGGCT--GAGTCTGCA---GCAGCAGCGAGACCATTACCTGGGTCACCTGCAGCAGTACGTGGCCGCCTATCAGCAGC
s panTro5.chr15               9367500 354 +  83230942 TTAGCAGATGGTGGTTGGCTCCCTCTGCTTTTCCACCAGTCTGTGGCCTACAGTTTAAATGGTGGGAAGAAGGGTGTGAGATTTGAGGCTGGGGAGGGAGGCATGGGCCTCTAGGCAAGGGAGGCAGTCATTTAGGCCTGGAGGAAGGGGCCA-GGGCCAGGGGCCTGGATAGGCGACAGAGCCCCGCAGTGCCCTCACTACCCTGTTTATGGGCCC--AGAATCTGGAAGCCAGCCACTACCTACCCTGACGCCTA------TCCTGCAGGTGGAGCTGAAGAGCCAAGAGGCT--GAGTCTGCA---GCAGCAGCGAGACCATTACCTGGGTCACCTGCAGCAGTACGTGGCCACCTATCAGCAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73951927 350 -  99763055 TTAGCAGATGGTGGTTGGCTCCCACTACTTTTCTACCAGTCTGTGGCCTACAGTTGAAATGGTGGGAAG-AGGACATGAGATTTGAGGCTGGGGAAGGAGGCATGGGGTTCTAGGAAAGCAAGGCAGTCACTTAGGCCTGAAGTAAG-------GGGCCAGGGGCCTGGGCAGGCAACAGAGCCCCACAGTGCCCTCGCTACCCTATTAATGGGCCC--AGAATCTGGAAGCCAGCCACCACGTGCCCTCACGCCCAGGGTCTTCCTG-----GGAGCTGAAGAGCCAAGAGGCTCAGAGTCTGCA---GTGGCAGCCAGACCATTACCTGGGTCACCTGCAGCAGTACGTGGGCACCTATCAGCAGC
i panPan2.chr15             I 4174 I 79
s gorGor5.CYUI01015853v1        11776 354 +    551209 TTAGCAGATGGTGGTTGGCTCCCTCTGCTTTTCCACCAGTCTGTGGCCTACAGTTTAAATGGTGGGAAGAAGGGTGTGAGATTTGAGGCTGGGGAGGGAGGCATGGGCCTCTAGGCAAGGGAGGCAGTCATTTAggcctggaggaaggggcca-gggccaggggcctgggcaggcgacagagccCCGCAGTGCCCTCACTACCCTGTTTATGGGCCC--AGAATCTGGAAGCCAGCCACTACCTACCCTGACGCCTA------TCCTGCAGGTGGAGCTGAAGAGCCAAGAGGCT--GAGTCTGCA---GCAGCAGCGAGACCATCACCTGGGTCACCTGCAGCAGTACGTGGCCACCTATCAGCAGC
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170330517 358 - 171882078 TTAGCAGATGGTGGTTGGCTCCCTCTGCTTTTCCACCAGTATGTGGCCTACAGTTTGAATGGTGGGAGGTAGGGTGTGAGATTTGAGGCTGGGGAGGGAGGCAT-GGCCTCTAGGCAAGGGAGGCAGTCACTTAGGCCTGGAGGAAGGGGCCAGGGGCCAGGGGCCTGGACAGATAACAGAGACCCACTGTGCCCTCGCCACCCTGTTTATGGGCCCAGAGAATCTGGAAGCCAGCCACTGCCTACCCTGACGCCTA------TCCTGCAGGTGGAGCTGAAGAGCCAAGAGGCTCAGAGTCTGCA---GCAGCAGCGAGACCATTCCCTGGGTCCACTGCAGCAGTACGTGGCCGCCTATCAGCAGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1549663 357 +   1584492 TTAGCAGATGGTGGTTGGCTCCCTCTGCTTTTCCACCAGTCTGTGGCCTACAGTTTAAATGGCGGGAAGAAGGGTGTGAGATTTGAGGCTGGGGAGGGAGGCATGGGCCTCTAGGCAAGGGAGGCAGTCACTTAggcctggaggaaggggccaggggccaggggcctgggCAGATAACAGAGCCCCACTGTGCCCTCGCCACCCTGTTTATGGGCCC--AGAATCTGGAAGCCAGCCACTGCCTACCCTGACGCCTA------TCCTGCAGGTGGAGCTGAAGAGCCAAGAGGCTCAGAGTCTGCA---GCAGCAGCGAGACCATTACCTGGGTCACCTGCAGCAGTACGTGGCCGCCTATCAGCAGC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36257534 356 -  75399963 TTACCAGATGGTGGTTGGCTCCCTCTGCTTTTCCACCAGTTTGTGGCCTGCAGTTTGAATGGTGGGAGGTAGGGTGTGAGATTTGAGGCTGGGGAGGGAGGCAT-GGCCTCTAGGCAAGGGAGGCAGTCACTTAggcctggaggaaggggccaggggccagggacctgggCAGGTAACAGAGTCCCACAGTGCCCTTGCTACCCTGTTTATGGGCCC--AGAATCTGGAAGCCAGCCACTAGCTACTCTGACATCTA------TCCTGCAGGTAGAGCTGAAGAGCCAAGAGGCTCAGAGTCTGCA---GCAGCAGCCAGACCATTCCCTGGGTCCCCTGCAGCAGTACGTGGCCGTCTATCAGCAGC
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1392657 351 +   5228064 TTAGCAGATGGTGGTTGGCTCCCTCTGCTTTTCCACCAGTATGTGGCCTACAGTTTGAATGGTGGGAGGTAGGGTGTGAGATTTGAGGCTGGGGAGGGAGGCGTGGGCCTCTAGGCAAGGGAGGCATTCACTTAGGCCTGGAGGA-------AGGGGCCAGGGACCTGGGCAGGCGACAGAGTCCCACAGTGCCCTCGCTACCCTGTTTATGGGGCC-TAGAATCTGGAAGCCAGCCACTAGCTACCCTGACATCTA------TCCTGCAGGTAGAGCTGAAGAGCCAAGAGGCTCAGAGTCTGCA---GCAGCAGTGAGACCATTACCTGGGTCACCTGCAGCAGTATGTGGCTGCCTATCAGCAGC
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10489282 334 -  54856640 TTGGCAGGTGGTGGCTGG----CTCTGCTTTTCCACCAGTCTGTGGCCTACAGTTTAAATGGTGGGAAGAAGGGTGTGAGATTTGAGCCTGGGAAGGGACG----GTGCTCTAGGCAAGGGAGGGAGTCACTTGGTCCTGGAGCAAG-------GGGCTAGAGGCTTGTGCAGGTGACAGAGCCCCACAGTGTTCTGGCTAC----GTTATGGGCCC--AGAATCTGGAAGCTAGCCATTGCCTGCCCTGATGCCTA------TCCTGCTGGTGGAGCTG-------AAGAGGCTCAGAGTCTACATCAGCAGAAGCCAGACTAGTTCCTGCGTCTCCTGCAGCAGTTCGTGGCCACCTCTCAGCAGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       802285 315 -   1271737 TTGGCAGGTGGTGGCTGGCTCCCTCTGCTTTTCCACCAGTCTGTGGCCTACAGTTTAAATGGTGGGAAGAAGGGTGTGAGATTTGAGGCTG---------------------------GGGAGGGAGTCACTTAGTCCTGGAGCAAG-------GGGCTAGGGGCTTGTGCAGGTGACAGAGCCCCACAGTGTTCTGGCTAC----GTTATAGGCCT--AGAATCTGGAAGCTAGCCAGTACCTGCCCTGATGCCTA------TCCTGCTGGTGGAGCTG-------AAGAGGCTCAGAGTCTACATCCGCAGAAGCCAGACTAGTTCCTGGGTCTCCTGCAGCAGTACGTGGCCACCTCTCAGCAGC
i cebCap1.NW_016107859v1    C 0 C 0
e aotNan1.NW_018512720v1      2613864 694 +   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=86394.000000
s hg38.chr15_KI270851v1_alt    110899 24 +    263054 TGGCCTCTGAGAAGGAGGCACTGC
s panTro5.chr15               9367854 24 +  83230942 TGGCCTCTGAGAAGGAGGCACTGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25853627 24 +  99763055 TGGCCTCTGAGAAGGAGGCACTGC
i panPan2.chr15             I 354 I 176
s gorGor5.CYUI01015853v1        12130 24 +    551209 TGGCCTCTGAGAAGGAGGCACTGC
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170330875 24 - 171882078 TGGCCTCTGAGAAGGAGGCTCTGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1550020 24 +   1584492 CGGCCTCTGAGAAGGAGGCTCTGC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36257890 24 -  75399963 TGGCCTCTAAGAAGGAGGCACTGC
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1393008 24 +   5228064 TGGCCTCTAAGAAGGAGGCACTGC
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10489616 24 -  54856640 TGACCTTTGACAAGGAGGTGCTGC
i saiBol1.JH378108          C 0 I 34
s cebCap1.NW_016107859v1       802600 24 -   1271737 TGACCTTTGACAAGGAGGTGCTGC
i cebCap1.NW_016107859v1    C 0 I 34
e aotNan1.NW_018512720v1      2613864 694 +   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=352927.000000
s hg38.chr15_KI270851v1_alt    110923 113 +    263054 CCAGCTGCAGCAGCAGGAAGCTCAGGGCGAAGCGGTGGCCGAGATGGCCCACCAATAGTTGCAGGAGACCCGGTTGAGGGAGTTGATGAGGGCGGGGCCCCAAGGGGGATGAT
s panTro5.chr15               9367878 113 +  83230942 CCAGCTGCAGCAGCAGGAAGCTCAGGGCGAAGCGGTGGCCAAGATGGCCCACCGATAGTTGCAGGAGACCCGGTTGAGGGAGTTGATGAGGGCGGGGCCCCAAGGGGGATGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73952356 113 -  99763055 CCAGCTGCAGCAGCAGGAAGCTTGGGGCAAAGCGGTGGCCGAGATGGCCTGCCAAAAGTTGCAGGAGACCCAGGGGAGGCAGCTGCCGAGGATGGGGCCGTGAGGGGGACGAC
i panPan2.chr15             I 79 C 0
s gorGor5.CYUI01015853v1        12154 113 +    551209 CCAGCTGCAGCAGCAGGAAGCTCAGGGCGAAGCAGTGGCCAAGATGGCCCACTGATAGTTGCAGGAGACCCGGTTGAGGGAGTTGATGAGGGCGAGGCCCCAAGGGGGATGAC
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170330899 113 - 171882078 CCAGCTGCAGCAGCAGGAAGCTCAGGGCAAAGCGGTGGCCGAGGTGGCCCCCCAATAGTTGCAGGAGACCCAGTTGAGGGAGCTGATGAGGGTGAGGCCCTGAGGGGGATGAC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1550044 113 +   1584492 CCAGCTGCAGCAGCAGGAAGCTCAGGGCAAAGCGGTGGCCGAGATGGCCCCCCAATAGTTGCAGGAGACCCAGTTGAGGGAGTTGATGGGAGTAGGGCCCTGAGGGGGACGAC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36257914 113 -  75399963 CCAGCTGCAGCAGCAGGAAGCTCAGGGCAAAGTGGTGGCTGAGATGGCCCACCAATAGTTGCAGGAGACCCAGTTGAGGGAGTTGATGAGGGTGGGGCCCCGAGGGCGACGAC
i chlSab2.chr5              C 0 C 0
s colAng1.NW_012115722v1      1393032 113 +   5228064 CCAGCAGCAGCAGCAGGAAGCTCAGGGCAAAGTGGTGGCCGAGATGGCCCACCAATAGTTGTCGGAGACCCAGTTGAGGGAGTTGATGAGGGTGGGGCCCCGAGGGCGACAAC
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10489674  83 -  54856640 CCAGCTGCAGCAGCAGGAA------------------------------CTCCAGCAGTTGCAGGAGACCTAAATGAGGGAGTTGCTGAAGGCAGGGCCCAGAGGGGGGCAGC
i saiBol1.JH378108          I 34 C 0
s cebCap1.NW_016107859v1       802658 111 -   1271737 CCAGCTGCAGCAGCAGGAAGCTCAGGGCAAAGCTCTGGCCAAGGTGG--CACCAACAGCTGCAGGAGACCTAAATGAGGGAGTTGCTGAAGGCAGGGCCCTGAGGGGGACAGC
i cebCap1.NW_016107859v1    I 34 C 0
e aotNan1.NW_018512720v1      2613864 694 +   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       112726 1158 +    138091 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=274774.000000
s hg38.chr15_KI270851v1_alt    111036 60 +    263054 CTGGCAACCTCCGTGCCTTCTCACTCTCTTTCCTGGCCCCTTAGGAGCACCTGGAAGCTG
s panTro5.chr15               9367991 60 +  83230942 CTGGCAACCTCCGTGCCTTCTCACTCTCTTTCCTGGCCCCTTAGGAGCACCTGGAAGCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73952469 58 -  99763055 CTGGCAAACTCCGTGCCTTCTCA--CTCTTTCCTGGCCCCTTAGGAGCGTCTAGAAGCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        12267 60 +    551209 CTGGCAACCTCCGTGCCTTCTCACTCTCTTTCCTGGCCCCTTAGGAGCACCTGGAAGCTG
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170331012 60 - 171882078 CTGGCAGCCTCCGTGCCTTCTCACTCTCTTTTCTGGCCCCTTAGGAGCACCTGGAAGCTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1550157 60 +   1584492 CTGGCAGCCTCCGTGCCTTCTCACTCTCTTTTCTGGCCCCTTAGGAGCACCTGGAAGCTG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36258027 60 -  75399963 CTGGCAACCTCCGTGCCGTCTCACTCTCTTTCCTGGCCTCTTAGGAACACCTGGAAGCTG
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       113887 60 +    138091 CTGGCAGCCTCCGTGCCTTCTCACTCTCTTTTCTGGCCCCTTAGGAGCACCTGGAAGCTG
i manLeu1.NW_012101289v1    M 1158 C 0
s colAng1.NW_012115722v1      1393145 60 +   5228064 CTGGCAACCTCCGTGCCTTCTCACTCTCTTTCCTGGCCTCTTAGGAACACCTGGAAGCTG
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10489757 59 -  54856640 CTGGCAATCTCC-TGCCTTCTCACTCTCTTTCCTGGCCCCTTAGGAGCACGCGGAAGCTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       802769 59 -   1271737 CTGGCAATCTCC-TGCCTTCTCACTCTCTTTCCTGGCCCCTTAGGAGCACGCGGAAGCTG
i cebCap1.NW_016107859v1    C 0 C 0
e aotNan1.NW_018512720v1      2613864 694 +   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=17864.000000
s hg38.chr15_KI270851v1_alt    111096 3 +    263054 CCA
s panTro5.chr15               9368051 3 +  83230942 CCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              73952527 3 -  99763055 CCA
i panPan2.chr15             C 0 I 59258
s gorGor5.CYUI01015853v1        12327 3 +    551209 CCG
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170331072 3 - 171882078 CCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1550217 3 +   1584492 CCA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36258087 3 -  75399963 CCA
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       113947 3 +    138091 CCA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1393205 3 +   5228064 CCA
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10489816 3 -  54856640 CCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       802828 3 -   1271737 CCA
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      1165157 3 -   3863790 CCA
i aotNan1.NW_018512720v1    I 905 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=12606.000000
s hg38.chr15_KI270851v1_alt    111099 2 +    263054 TC
s panTro5.chr15               9368054 2 +  83230942 TC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25853827 2 +  99763055 TC
i panPan2.chr15             I 176 C 0
s gorGor5.CYUI01015853v1        12330 2 +    551209 TC
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170331075 2 - 171882078 TC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1550220 2 +   1584492 TC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36258090 2 -  75399963 TC
i chlSab2.chr5              C 0 I 1032
s manLeu1.NW_012101289v1       113950 2 +    138091 TC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1393208 2 +   5228064 TC
i colAng1.NW_012115722v1    C 0 I 1034
s saiBol1.JH378108           10489819 2 -  54856640 TC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       802831 2 -   1271737 TC
i cebCap1.NW_016107859v1    C 0 I 2322
s aotNan1.NW_018512720v1      1165160 2 -   3863790 TC
i aotNan1.NW_018512720v1    C 0 I 529
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=4242.000000
s hg38.chr15_KI270851v1_alt    111101 2 +    263054 TA
s panTro5.chr15               9368056 2 +  83230942 TA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25853829 2 +  99763055 TA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        12332 2 +    551209 TA
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170331077 2 - 171882078 TA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1550222 2 +   1584492 TA
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1       113952 2 +    138091 TA
i manLeu1.NW_012101289v1    C 0 C 0
s saiBol1.JH378108           10489821 2 -  54856640 CA
i saiBol1.JH378108          C 0 I 1063
e aotNan1.NW_018512720v1      1165162 529 -   3863790 I
e cebCap1.NW_016107859v1       802833 2322 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1393210 1034 +   5228064 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e chlSab2.chr5               36258092 1032 -  75399963 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=18123.000000
s hg38.chr15_KI270851v1_alt    111103 11 +    263054 ATGAGCACATG
s panTro5.chr15               9368058 11 +  83230942 ATGAGCACATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25853831 11 +  99763055 CTGAGCACATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        12334 11 +    551209 ATGAGCACATG
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170331079 11 - 171882078 CCGAGCACATG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1550224 11 +   1584492 CCGAGCACATG
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1       113954 11 +    138091 CCGAGCACATG
i manLeu1.NW_012101289v1    C 0 C 0
e aotNan1.NW_018512720v1      1165162 529 -   3863790 I
e cebCap1.NW_016107859v1       802833 2322 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1393210 1034 +   5228064 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e chlSab2.chr5               36258092 1032 -  75399963 I
e saiBol1.JH378108           10489823 1063 -  54856640 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=3276.000000
s hg38.chr15_KI270851v1_alt    111114 1 +    263054 A
s panTro5.chr15               9368069 1 +  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25853842 1 +  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        12345 1 +    551209 A
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170331090 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1550235 1 +   1584492 A
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36259124 1 -  75399963 A
i chlSab2.chr5              I 1032 C 0
s manLeu1.NW_012101289v1       113965 1 +    138091 A
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1394244 1 +   5228064 A
i colAng1.NW_012115722v1    I 1034 C 0
e aotNan1.NW_018512720v1      1165162 529 -   3863790 I
e cebCap1.NW_016107859v1       802833 2322 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e saiBol1.JH378108           10489823 1063 -  54856640 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=370485.000000
s hg38.chr15_KI270851v1_alt    111115 119 +    263054 CAAGAAGGCAAAGACAATAAACATGTAAAAGCCGG------CAGCAAGGCCTGGAGAAGAGTAAGCCGCCATGTGACTGTTTAGAA-TATAGTCTGAGCACAAACCTGAAAAAAAAATT-------TTATTTA
s panTro5.chr15               9368070 119 +  83230942 CAAGAAGGCAAAGACAATAAACATGTAAAACCCAG------CAGCAAGGCCTGGAGAAGAGTAAGCCGCCATGTGACTGTTTAGAA-TATAGTCTGAGCACAAACCTGAAAAAAAAATT-------TTATTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25853843 118 +  99763055 CAAGAAGGCAAAGACAATAAACATGTAAAACCCAG------CAGCAAGGCCTGGAGAAGAGTAAGCCGCCATGTGACTGTTTAGAA-TATAGTCTGAGCACAAACCTG-AAAAAAATTT-------TTATTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        12346 119 +    551209 CAAGAAGGCAAAGACAATAAACATGTAAAACCCAG------CAGCAAGGCCTGGAGAAGAGTAAGCCGCCATGTGACTGTTTAGAA-TATAGTCTGAGCACAAACCTGAAAAAAAATTT-------TTATTTA
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170331091 126 - 171882078 CAAGAAGGCAAAAACAATAAACATGTAAAACCCGG------CAGCAAGGCCTGGAGAAGAGTCAGCTGCCATGTGACTGTTTAGAA-TATAGTCTGAGCCCAAACCTGAAAAAAAAAACCAAAAATTTATTTA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1550236 120 +   1584492 CAAGAAGGCAAAAACAATAAACATGTAAAACCCGG------CAGCAAGGCCTGGAGAAGAGTCAGCTGCCATGTGACTGTTTAGAA-TATAGTCTGAACCCAAACCCGAAAAAAAAAAT------TTTATTTA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36259125 118 -  75399963 CAAGAAGGCAAAGATCATAAACAGCGAAAAGCTGG------CAGCAAGGCCTGGAGAAGAGTAAGCTGCCATGTGACTGTTTACAA-TATAGTCTGAGCACAAACCTGAAAAAAAAAAG--------TATTTA
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       113966 121 +    138091 CAAGAAGGCAAAAACAATAAACATGTAAAACCCGG------CAGCAAGGCCTGGAGAAGAGTCAGCTGCCATGTGACTGTTTAGAA-TATAGTCTGAGCCCAAACCTGAAAAAAAAAAA-----ATTTATTTA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1394245 120 +   5228064 CAAGAAGGCAAAGATCATAAACATCTAAAAGGTGG------CAGCAAGGCCTAGAGAAGAGTAAGCTGCCATGTGACTGTTTAGAACTATAGTCTGAGCACAAACCTGAAAAAACATAA-------GTATTTA
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10490886 124 -  54856640 CAGGAAGATCAAGATAATTAACATCTGAAAGCCGGCACTGTCACCAAGGCCTAGAGATTTATAAGCCACCATGGGACTGT---AAA-TATGCTCCCAGCACCAACCTGAAAAGAAAAAA-----AATTATTTA
i saiBol1.JH378108          I 1063 I 7
e aotNan1.NW_018512720v1      1165162 529 -   3863790 I
e cebCap1.NW_016107859v1       802833 2322 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=342143.000000
s hg38.chr15_KI270851v1_alt    111234 116 +    263054 TTTTAAATTGTGGCAAAATACTggccaggcatggtagctcacgcctgtaatcctagcaatttgggaggccgaggtaaatggatgacctgaggtcaagagttcaagaccagcctggc
s panTro5.chr15               9368189 116 +  83230942 TTTTAAATTGTGGCAAAATACTggccaggcatggtagctcacgcctgtaatcctagcaatttgggaggccgaggtaaatagatgacctgaggtcaagagttcaagaccagcctggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25853961 116 +  99763055 TTTTAAATTGTGGCAAAATACTggccaggcatggtagctcacgcctgtaatcctagcaatttgggaggccgaggtaaatagatgacctgaggtcaagagttcaagaccagcctggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        12465 116 +    551209 TTTTAAATTGTGGCAAAATACCggccaggcatggtagctcacgcctgtaatcccagcaatttgggaggccgaggtaaatggatgacctgaggtcaagagttcaagaccagcctggc
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170331217 116 - 171882078 TTTTAAATTGAGGCAAAATACTggtcaggcacagtggttcatgcctgtaatcccagcaatttgggagactgaggtgaatggaccacctgaggtcaggagttccagaccagcctggc
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1550356 116 +   1584492 TTTTAAATTGTGGCAAAATACTggtcaggcacagtggttcacatctgtaatcccagcaatttgggaggccgaggtgaatggaccacctgaggtcaggagttcatgaccagcctggc
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36259243 116 -  75399963 TTTTAAATTGTGGCAAAATACTggccaggcgcaggggctcacacctgtaatcccagcaatttgggaggcggaggtgaatgggtcacctgaagtcaggggttcaagaccagcctggc
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       114087 116 +    138091 TTTTAAATTGTGGCAAAATACTggtcaggcacagtggttcacatctgtaatcccagcaatttgggagactgaggtgaatggaccacctgaggtcaggagttccagaccagcctggc
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1394365 116 +   5228064 TTTTAAATTGTGGCAAAATACTggccaggcgcaggggctcacgcctgtaatcccaccaatttgggaggcggaggtgaatggatcacctgaggtcaggggttcaagaccagcctggc
i colAng1.NW_012115722v1    C 0 M 950
e aotNan1.NW_018512720v1      1165162 529 -   3863790 I
e cebCap1.NW_016107859v1       802833 2322 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e saiBol1.JH378108           10491010   7 -  54856640 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=14938.000000
s hg38.chr15_KI270851v1_alt    111350 6 +    263054 caatac
s panTro5.chr15               9368305 6 +  83230942 caatac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25854077 6 +  99763055 caatac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        12581 6 +    551209 caatac
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170331333 6 - 171882078 caatac
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1550472 6 +   1584492 caatgc
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36259359 6 -  75399963 caatac
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       114203 6 +    138091 caatac
i manLeu1.NW_012101289v1    C 0 C 0
e aotNan1.NW_018512720v1      1165162 529 -   3863790 I
e cebCap1.NW_016107859v1       802833 2322 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1394481 950 +   5228064 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e saiBol1.JH378108           10491010 7 -  54856640 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=1572805.000000
s hg38.chr15_KI270851v1_alt    111356 595 +    263054 aaaaattagccgggcatggtggcgcatgcctgtaatcccagctacttgggagg-----------------ctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagctgagatcgtgccactgcactcaagcctgggtgacagagcgaaactccgtctc--aaaaaaaaaaG---------------------------------------------------------TTTCTTCCT-----------TACATGTATGTTTCTAT----------------------------------------------------TAGTTTTCTTCTTGGTCTTTCTCATTTAGTCTTGTGTTGTCTTTTGACATTC-ATAGTAAACTTttatctgcctccagagagtattgactttgagtttatggcacacaattggagtaagggcagatcgccttcatctactttgggactaagctggttcaaagcaggttttaggttttctgatggctggtctatgttttattcatttggactcccaggggt----ggcccttccagggtccccaccaaggtcccatctccttcctgggacccaaattctcattaggtcatttcagccctgtgagagtgccaaacattcagctaggctctccagcctcttaactaccacttcatactcagtttcttagcctcttagccctctactgttgaccaatcaccaaatgtggg-aaa
s panTro5.chr15               9368311 595 +  83230942 aaaaattagccgggcatggtggcacatgcctgtaatcccagctacttgggagg-----------------ctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagctgagatcgtgccactgcactcaagcctgggtgacagagcgaaactccgtctc--aaaaaaaaaaG---------------------------------------------------------TTTCTTCCT-----------TACATGTATGTTTCTAT----------------------------------------------------TAGTTTTCTTCTTGGTCTTTCTCATTTAGTCTTGTGTTGTCTTTTGGCATTC-ATAGTAAACTTttatctgcctccagagagtattgactttgagtttatggcacacaattggagtaagggcagatcgccttcatctactttgagactaagctggttcaaagcaggttttaggttttctgatggctggtctatgttttattcatttggactcctaggggt----ggcccttccagggtccccaccaaggtcccatctccttcctgggacccaaattctcattaggtcatttcagccctgtgagagtgccaaacattcagctaggctctccagcctcttaactaccacttcatactcagtttcttagcctcttagccctctactgttgaccaatcaccaaatgtggg-aaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25854083 595 +  99763055 aaaaattagccgggcatggtggcgcatgcctgtaatcccagctacttgggagg-----------------ctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagctgagatcgtgccactgcactcaagcctgggtgacagagcgaaactccgtctc-aaaaaaaaaaaG---------------------------------------------------------TTTCTTCCT-----------TACATGTATGTTTCTAT----------------------------------------------------TAGTTTTCTTCTTGGTCTTTCTCATTTAGTCTTGTGTTGTCTTTTGGCATTC-ATAGTAAACTTttatctgcctccagagagtattgactttgagtttatggcacacaattggagtaagggcagatcgccttcatctactttgagactaagctggttcaaagcaggttttaggttttctgatggctggtctatgttttattcatttggactcctaggggt----ggcccttccagggtccccaccaatgtcccatctccttcctgggacccaaattctcattaggtcatttcagccctgtgagagtgcc-aacattcagctaggctctccagcctcttaactaccacttcatattcagtttcttagcctcttagccctctactgttgaccaatcaccaaatgtggg-aaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        12587 596 +    551209 aaaaattagccaggcatggtggcgcatgcctgtaatcccagctacttgggagg-----------------ctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagctgagatcgtgccactgcactcaagcctgggtgacagagcgagactccatctc--aaaaaaaaaaG---------------------------------------------------------TTTCTTCCT-----------TACATGTATGTTTCTAT----------------------------------------------------TAGTTTTCTTCTTGGTCTTTCTCATTTAGTCTTGTGTTGTCTTTTGGCATTC-GTAGTAAACTTttatctgcctccagagagtattgactttgagtttatggcacacaatgggagtaagggcagatcgccttcatctactttgggactaagctggttcaaagcaggttttaggttttctgatggctggtctatgttttattcatttggactcctaggggt----ggcccttccagggtccccaccaaggtcccatctccttcctgggacccaaattctcattatgtcatttcagccctgtgagagtgccaaacattcagctaggctctccagcctcttaactatcacttcatactcagtttcttagcctcttagccctctactgttgaccgatcaccaaatgtgggaaaa
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170331339 648 - 171882078 aaaaattagccgggcatggtggcgcatgcctgtaatcccagctacttgggagg-----------------ctgaggcaggagaatcgctcgaacctgggaggcagaggttgcagtgagttgagatcatgccactgcactcaagcctgggtgacagagcgagactctgtctccaaaaaaaaaaca--aaaaaaaaacaaaaaaaaaG--------------------------TTTCTTCATTATCTTCCT-----------TACATGTATGTTTCTATTGGtttttttcttgtatatttcta----------------------------ttttttttttcttgttctttCTCATTTAGTCTTGTCTTGTCTTATGGCATTG-CTAGTAAACTTttatctgcctccagagagtattgactttgactttatggcacacaattggagtaagcgcagatcaccttcatctagtttgggactaagctagttcaaagcaggccttagtttttgtgacggctggtctattttttattcatttggactcctaggggt----ggcccttccagggtccccaccaaggtcccatctccttactgggacccaaattctcatgaggtcatttcagccc--tgtgagtgccacacattcagctaggctctccagcctcttaaccaccacttcagactcagTTTCTTAACCTCTTAGCCCTCTACTGTTTACCAATCACCAAATGTGGG-AAA
i macFas5.chr7              C 0 N 0
s cerAty1.NW_012002601v1      1550478 694 +   1584492 aaaaattagccgggcatggtggcgcatgcctgtaatcccagctacttgggagg-----------------ctgaggcaggagaatcgctcagacctgag-ggcagaggttgcagtgagctgagatcgtgccactgcactcaagcctgggtgacagagcgagactccgtctccaaaaaaaaaaaaacaaagaaaaacaaaaaaaaataa---------aaaataaaaaaaaTCTTTCTTCCTTATCTTCCT-----------TACATGTATGTTTCTATTGGTTTTTTTCTTGTATGTTTGTATTGGTTGTTTTCTTGTATGTTTCTATTGTTTTTTTTTTCTTGTTCTTTCTCATTTAGTCTTGTCTTGTCTTATGGCGTTG-CTAGTAAACTTttatctgcctccagagagtactgactttgactttatggcacacaattggagtaagcgcggatccccttcatctagtttggaactaagctggttcaaagcaggttttagtttttgtgacggctggtctattttttattcatttggactcctaggggt----gacccttccagggttcccaccaaggtcccatctccttactgggacccaaattctcattaggtcatttcagccc--tgtgagtgccaagcattcagctaggctctccagcctcttaaccaccacttcagactcagtttcttaacctcttagccctctactgttaaccaatcaccaaatgtcgg-aaa
i cerAty1.NW_012002601v1    C 0 I 1
s chlSab2.chr5               36259365 584 -  75399963 aaaaattagccaggcgtggtggtgcgtgcctatagtcccagctatttgggagg-----------------ctgaggcaggagaatcgcttgaacctgggaggcagaggttgcaatgagctgagatcgtgccactgcactcaaacctgggtgacagagcaagactctgtctccaaaaaaaaaaaa-aaaaaaaaaaaaG-------------------------------------------TTTCTTCCT-----------TACATTTATGTTTCTAT----------------------------------------------------TGGTTTTTTTCTTGGTCTTTCTCATTTAGTCCTATCTTGTCTTATGGCATTTCCTAGTAAACTTttacctgcttccagagagtattgactttgactttatggcacacaattggagtaagggcagatcaccttcatctagtttg----------ggttca----aggttttagtttttgtgatgggtggtctgttttgtatttacttggactcctaggggt----ggcccttccag------------ggtcccgtctccttagtgggacccaaattctcattaggtcatttcagcct-gtgagagtgccgaatattcagctaggctttccagcctgttaactacaacttcatactcactttcttagcctcttagtcctctactgtttaccaatcaccaaatgtggg-aaa
i chlSab2.chr5              C 0 I 1
s manLeu1.NW_012101289v1       114209 663 +    138091 aaaaattagccgggcatggtggcgcatgcctgtaatcccagctacttgggagg-----------------ctgaggcaggagaatcgctcagacctgag-ggcagaggttgcagtgagctgagattgtgccactgcactcaagcctgggtgacagagcgagactccgtctccaaaaaaaaaaaa-caaagaaaaacaaaaaaAAAA------------TAACAAAAAAAATCTTTCTTCCTTATCTTCCT-----------TACATGTATGTTTCTATTGGTTGTTTTCTTGTATGTTTCTAC---------------------------TGGTTTTTTTCTTGTTCTTTCTCATTTAGTCTTGTCTTGTCTTATGGCGTTG-CTAGTAAACTTttatctgcctccagagagtattgacttggactttatggcacacaattggagtaagcgcagatcaccttcgtgtagtttgggactaagctggttcaaagcaggctttagtttttgtttgggctgctctattttttattcatttggactcctaggggt----gacccttccagggttcccaccaaggtcccatctccttactgggacccaaattctcatgaggtcatttcagccc--tatgagtgccaagcattcagctaggctctccagcctcttaaccaccacttcagactcagtttcttagcctcttagccctctactgtttaccaatcaccaaatgtggg-aaa
i manLeu1.NW_012101289v1    C 0 I 1
s saiBol1.JH378108           10491017 668 -  54856640 aaatactggctgggtgtggtggctcatgcctgtaatcccagcactttgggaggctgaggtagggggatcactgaggcaggagaattgcttgaaccctgaaggctgaggatgaaatgagctgggattgcgccactgcacttcagcctaggcaacaaaga------ttgtctc--aaaaaaaaaaa--aaaaaaaggtaaaaTACAGTTAAAATTTACTatgttaataaaagttattttaaagtttctacctgaggactcatatctatgtatgttttcattgtc------------------------------------------------ttctttatctctcggtctttctcctttagtc-----tggtccgatggcatgc-ctagtaaacttgtgtctgcctccagagagtgttgactttgaccttatggcacacagtcgaagtaagggcagatcaccgtcatctagtttgggactaagctggttcaaagcaggttttaggttttgtgacagctggtctcttt-------atttggactcctaggggtggccggcccttccagggtccccacctaagtctcatctctttactggggcccaaattcccatgatgtcatttcagccctgtgacagtgccaaacattcagctcagctttccagcctcttaattatcccttCATAGtcagtttcttagcttcttagccctatactgtttaccaatcacgaaatgtggg-gaa
i saiBol1.JH378108          I 7 C 0
e aotNan1.NW_018512720v1      1165162 529 -   3863790 I
e cebCap1.NW_016107859v1       802833 2322 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1394481 950 +   5228064 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=4236.000000
s hg38.chr15_KI270851v1_alt    111951 3 +    263054 gca----
s panTro5.chr15               9368906 3 +  83230942 gca----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25854678 3 +  99763055 gca----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        13183 3 +    551209 gca----
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170141769 3 - 171882078 gca----
i macFas5.chr7              N 0 C 0
s cerAty1.NW_012002601v1      1551173 3 +   1584492 gca----
i cerAty1.NW_012002601v1    I 1 C 0
s chlSab2.chr5               36259950 3 -  75399963 gca----
i chlSab2.chr5              I 1 C 0
s manLeu1.NW_012101289v1       114873 3 +    138091 gca----
i manLeu1.NW_012101289v1    I 1 C 0
s saiBol1.JH378108           10491685 5 -  54856640 --aaccc
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018512720v1      1165162 529 -   3863790 I
e cebCap1.NW_016107859v1       802833 2322 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1394481 950 +   5228064 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=798056.000000
s hg38.chr15_KI270851v1_alt    111954 266 +    263054 ctacagactgtcaggatcacctcctaggcctggtcactcaagtcctgactgaggtctccaattaccttccaacaattgtttttga---------ttgggggcggggcacatttttatccagtttttctaactgctcttgtggggaggcgaatctgtaacaagctcctctgcctttactgaaagttgaaAACCTTCATCTGTCCtttttttgttg-------------------------ttgttgagatggagtcttgcgctgttgcccaggctctagtgcaatggcacgatctctgctc
s panTro5.chr15               9368909 266 +  83230942 ctacagactgtcaggatcacctcctaggcctggtcactcaagtcctggctgaggtctccaattaccttccaacaattgtttttga---------ttgggggcggggcacatttttatccagtttttctaactgctcttgtggggaggcgaatctgtaacaagctcctctgcctttattgaaagttgaaAACCTTCATCTGTCCTCtttttgttg-------------------------tttttgagatggagtcttgcgctgttgcccaggctctagtgcaatggcacgatctctgctc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25854681 266 +  99763055 ctacagactgtcaggatcacctcctaggcctggtcactcaagtcctggctgaggtctccaattaccttccaacagttgtttttga---------ttgggggcggggcacatttttatccagtttttctaactgctcttgtggggaggcgaatctgtaacaagctcctctgcctttattgaaagttgaaAACCTTCATCTGTCCTCtttttgttg-------------------------tttttgagatggagtcttgcgctgttgcccaggctctagtgcaatggcacgatctctgctc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        13186 266 +    551209 ctaaggactgtcaggatcacctcccaggcctggtcactcaagtcctggctgaggtctccaattaccttccaacaattgtttttga---------ttgggggcggggcacatttttatccagtttttctaactgctcttgtggggaggtgaatctgtaacaagctcctctgcctttattgaaagttgaaAACCTTCATCTGTCCtttttttgttg-------------------------tttttgagatggagtcttgcgctgttgcccaggctctagtgcaatggcatgatctctgctc
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170141772 252 - 171882078 gtacagactgtcagggtcacctcctaggcctggtcactcaagtcctggctaaggtctccaattaccttcaaacagttgtttttgg---------tg--g---ggggcacatttttgtccgggtttttaaactgctcttgtagggaggctaatctataacaagctactctgccTTCAG-------TGAAAACCTTCA--TGTCtttttttttttt-----------------------tttttctgagatgcagtcccg--ctgttgcccaggctctagtgcagtggcaggatctcggctc
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1551176 288 +   1584492 ctacagactgtcagggtcacctcctaggcctggtcactcaagtcctgactgaggtctccaattaccttcaaacagttgtttttgg---------tggtg---ggggcacatttttgtccagtttctctaactgctcttgtggggaggttaatctgtaacaagctactctgcctttagtgtaagttgaaAACCTTCATCTGTCTCtgtttttttttgttttgttttgttttgttttgctttgtttgagatggagtcttgctctgttgcccaggctccagtgcagtggtgtgatctctgctc
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36259953 247 -  75399963 ctacagac--tcagggtcacctcctaggactggtcacacaagtcctggctgaggtctccaattaccttcaaacaattgtttttgc---------t-------ggggcacattttagtccagtttttctaactgctcttgtggggaggctaatctgtaa-aagctactctgcctttagtgaaagttgaaAACCTTCATCTGTCCttttttttttt--------------------------------gatggattctcg--ctgtcacccaggctgtagtgcagtggcatgatctctgctc
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       114876 282 +    138091 ctacagactgtcagagtcacctcctaggcctgctcactcaagtcctgactgaggtctccaaataccttcaaacagttgtttttgg---------tggtg---ggggcacatttttgtccagtttctctaactgctcttgtggggaggttaatctgtaacaagctactctgcctttagtgtaagttgaaAACCTTCATCTGTCTCtgtttttttt------gttttgttttgttttgctttgtttgagatggagtctcgctctgttgcccaggctccagtacagtggcgtgatctctgctc
i manLeu1.NW_012101289v1    C 0 C 0
s saiBol1.JH378108           10491690 260 -  54856640 ctacagactgttggggtcaccttctgggcctggccactcaagtcctggccgaggtctccagttaccttccaacaattgtttttgg-gtagggggttgtgggggcggcacagttttgttcagtttttctaactgttcttgtggggaggctgatctataaccagctactctgcctttAATGAATGTTGAAAACCTTCATGTGTC-------ttttg-------------------------tttttgagatggagcctcg-------gcccaggctcaagtgcagtgttgtgatctcagctc
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      1165691 258 -   3863790 CTACAGCCTGTCGGGGTCACCTCCTAGGCCTGGTCACTCAAGTCCTGGCCGAGGTCTCCAGTTACCTTCCAAC---TGTTTTTAGTGGTGGTGGTGGGGGGCGGGGCACAGTTTTGTCCATTTTTTCTAACTGTTCTTGTGGGGAGGCTAATCTATAACTAGCTACTCTGCCTTTAGTGAAAGCTGAAAACCTTCATCCGCC-------ttttg-------------------------tttttgagatggcacctcg-------gcccaggctcaagtgtagtgatgtgatctctgctc
i aotNan1.NW_018512720v1    I 529 C 0
e cebCap1.NW_016107859v1       802833 2322 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1394481 950 +   5228064 M
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=990347.000000
s hg38.chr15_KI270851v1_alt    112220 236 +    263054 actgtaacctctgcctcctgg-gttcaagcaattctcctgcctcagcttcccgcgta-------------gcgtgtgccaccatgcctggctaatttttttttatacctttaatagaggcaggatgtcaccatgttttccaggctggtctcgagctcctgactcaggtgatctacctgcctcagcctcccaaagtgctgggattacaagtatgagccactgcatccggccCATCTGTCTTTTAAAACATG
s panTro5.chr15               9369175 236 +  83230942 actgtaacctccgcctcgtgg-gttcaagcaattctcctgcctcagcttcccgagta-------------gcgtgtgccaccatgcctggctaatttttttttatacctttaatagaggcaggatttcaccatgttttccaggctggtctcgagctcctgactcaggtgatctacctgcctcagcctcccaaagtgctgggattacaagtatgagccactgcatccggccCATCTGTCTTTTAAAACATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25854947 236 +  99763055 actgtaacctccgcctcgtgg-gttcaagcaattctcctgcctcagcttcccgagta-------------gcgtgtgccaccatgcctggctaatttttttttatacctttaatagaggcaggatttcaccacattttccaggctggtcttgagctcctgactcaggtgatctacctgcctcagcctcccaaagtgctgggattacagacgtgagccactgcatccggccCATCTGTCTTTTAAGAAATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        13452 233 +    551209 actgtaacttctgcctcctgg-gttcaagcaattctcctgcctcagcttcccgagta-------------gcgtgtgccaccatgcctagctaa-ttttttttatacctttaatagaggcaggatttcaccatgttttccaggctggtctcgagctcctgactcaggtgatctacctgcctcagcctcccaaagtgctgggattacaagtatgagccactgcatccggACCATCTGTCTTTTAAAAC--G
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170142024 245 - 171882078 actgtaacctctgcctcctgg-gttcaagcaattctcctgccgcagcctcctgagtagctggcattacaggcgtatgtcaccatagctggctaa----tttttatatttttaatagagacaggacttcaccatgttttccaggctggtctcgagctcctgactcaggtgatctacccgccttggcctcccaaagttctgggattacaggcgtgagccactgcgtccggccCATCTGTCttttaaaaaatg
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1551464 245 +   1584492 actgtaacctccacctcctgg-gttcaagcaattctcctgcctcagcctcccgagcagctgggactacaggcctgtgtccccatgcctggctaa----tttttgtatttttaatagagacaggatttatccatgttttccaggctggtctcgagctcctgactcaggtgatctacccgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcatctggccCATCTGTCTTTTAAAAAATG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36260200 245 -  75399963 actgaaacctccgcctcctag-gttcaagcagttctcctgcctcagcctcctgagtagctggaattacaggcgtgtgccaccatgcctggctaa----tttttatatttttaatagagacaggattgaaccatgttttccaggctggtctcgagctcctgactcaagtgatctgcctgcctcagcctcccaaagtgctgggattacaggcgtgagccactgcatccggccCATCTGtcttttaaaacatg
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       115158 245 +    138091 actgtaacctccacctcctgg-gttcaagcaattctcctgcctcagcctcccgagtagctgggactacaggcctgtgtccccatgcctggctaa----tttttgtatttttaatagagacaggatttaaccatgttttccaggctggtctcgagctcctgactcaggtgatctatctgcctcgggctcccaaagtgctgggattacaggcgtgagccactgcatctggccCATCTGTCTTTTAAAAAATG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1395431 245 +   5228064 actgaaacctctgcctcccag-gttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcgtgtgccaccatgcctggctaa----tttttacatttttaatagagacaggatttcaccatgttttccaggctggtctcgagctcctgactcaagtgatctgcctgcctcagcctcccaaagtgctgggattacaggcgtgagccactgcatccggccCATCTGTCTTTTAAAACATG
i colAng1.NW_012115722v1    M 950 C 0
s saiBol1.JH378108           10491950 239 -  54856640 actgtaacctctgcctcctggagttcaagcagttc---tgcctcagcctcccaagtagctgggattacaggcgtgtgccaccatgcctggctaa----tttttgcattttcaatagagatgggatttcgccatgttggccaggctggtctggagcttc----tcaggtgatctacttgcctcagcctcctaaagggctgggattacaggtgtgccccactgcatgtggccCCTCTGtcttttaaaaaatg
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      1165949 245 -   3863790 actggaacctctgccccctggggttcaagcaattctcttgcctcagcctccc-agtagctgggattataggcgtgtgccaccatgcctggctaa----tttttgcattttcagtagagacaggatttcaccacattgaccaggctagtcttgagcttctgattcaggtgatctacctgccttggcctcctaaagtgctgggattacaggtgtgcaccactgcgTGCAACCCATCTGTCTTTTAAAAAATG
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       802833 2322 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e calJac3.chrUn_GL286477        45727 1193 -     60449 I

a score=293048.000000
s hg38.chr15_KI270851v1_alt    112456 74 +    263054 tttttaattggaggta-taatttctatt-agtgaaatgcacaggtctg--gtttacattttgatgagttttaactcat
s panTro5.chr15               9369411 74 +  83230942 tttttaattggaggta-taatttctatt-agtgaaatgcacaggtctg--gtttacattttgatgagttttaactcat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25855183 75 +  99763055 TATTTAATAtgaggta-taatttatattcagtgaaatgcacagatctg--gtttccattttgatcagtttcaacaaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        13685 74 +    551209 tttttaattggaggta-taatttctatt-agtgaaatgcacaggtctg--gtttacattttgatgagttttaacttat
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170142269 75 - 171882078 tttttaatttgaagta-taatttacattcagtaaaatgcacagatctg--ctttacattttgatgagttttaacaaat
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1551709 75 +   1584492 tttttaatttgaggta-taacttatattcagtgaaatgcacacatctg--ctttacattttgatcagttgcaacaaat
i cerAty1.NW_012002601v1    C 0 I 9
s chlSab2.chr5               36260445 73 -  75399963 tttttaatttgaggca-taatttatattcagtgaaatgcacagatctg----gtatattttgatgaatttcaacaaat
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       115403 75 +    138091 tttttaatttgaggta-taatttatattcagtgaaatgcacacatctg--ctttacattttgatcagttgcaacaaat
i manLeu1.NW_012101289v1    C 0 I 7
s colAng1.NW_012115722v1      1395676 75 +   5228064 tttttaatttgaggca-taatttatattcagtgaaatgcacagatctg--gtttacattttgatcagttttaacaaat
i colAng1.NW_012115722v1    C 0 I 9
s calJac3.chrUn_GL286477        46920 78 -     60449 tttttaatttgtggtataacttcaaattcagtgaaatgcctagatctgaagtgtatgttctgatgagttttcacaaat
i calJac3.chrUn_GL286477    I 1193 C 0
s saiBol1.JH378108           10492189 72 -  54856640 tttttaa-----gata-aaatttatattcagtgaaatgcctccatctgaagtgtacattttgatcagttttgagaaat
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      1166194 77 -   3863790 Cttttaatttgcggta-taattaatattcagtgaaatgtctagatctgaagtatacattttgatgagttttgacaaat
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       802833 2322 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=7460.000000
s hg38.chr15_KI270851v1_alt    112530 9 +    263054 ttaacatta---
s panTro5.chr15               9369485 9 +  83230942 ttaacatta---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25855258 6 +  99763055 ---gcatta---
i panPan2.chr15             C 0 I 1
s gorGor5.CYUI01015853v1        13759 9 +    551209 ttaacatta---
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170142344 6 - 171882078 ---gcatta---
i macFas5.chr7              C 0 C 0
s chlSab2.chr5               36260518 6 -  75399963 ---gcatta---
i chlSab2.chr5              C 0 I 1
s calJac3.chrUn_GL286477        46998 9 -     60449 ---gcattaccc
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10492261 9 -  54856640 ---gcattaatc
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      1166271 9 -   3863790 ---gtattaccc
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       802833 2322 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1395751 9 +   5228064 I
e manLeu1.NW_012101289v1       115478 7 +    138091 I
e cerAty1.NW_012002601v1      1551784 9 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=-6351.000000
s hg38.chr15_KI270851v1_alt    112539 2 +    263054 -ct
s panTro5.chr15               9369494 2 +  83230942 -cc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25855265 2 +  99763055 -cc
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01015853v1        13768 2 +    551209 -cc
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170142350 2 - 171882078 -cc
i macFas5.chr7              C 0 I 1
s chlSab2.chr5               36260525 2 -  75399963 -cc
i chlSab2.chr5              I 1 C 0
s manLeu1.NW_012101289v1       115485 2 +    138091 -cc
i manLeu1.NW_012101289v1    I 7 C 0
s calJac3.chrUn_GL286477        47007 2 -     60449 at-
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10492270 2 -  54856640 at-
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      1166280 2 -   3863790 at-
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       802833 2322 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115722v1      1395751 9 +   5228064 I
e cerAty1.NW_012002601v1      1551784 9 +   1584492 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=-674.000000
s hg38.chr15_KI270851v1_alt    112541 4 +    263054 atgg
s panTro5.chr15               9369496 4 +  83230942 atgg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25855267 4 +  99763055 atgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        13770 4 +    551209 atgg
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170142353 4 - 171882078 atat
i macFas5.chr7              I 1 C 0
s cerAty1.NW_012002601v1      1551793 4 +   1584492 atgt
i cerAty1.NW_012002601v1    I 9 C 0
s chlSab2.chr5               36260527 4 -  75399963 atgt
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       115487 4 +    138091 atgt
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1395760 4 +   5228064 atgt
i colAng1.NW_012115722v1    I 9 C 0
s calJac3.chrUn_GL286477        47009 2 -     60449 gt--
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10492272 2 -  54856640 at--
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      1166282 2 -   3863790 gt--
i aotNan1.NW_018512720v1    C 0 n 0
e cebCap1.NW_016107859v1       802833 2322 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=5200.000000
s hg38.chr15_KI270851v1_alt    112545 2 +    263054 aa
s panTro5.chr15               9369500 2 +  83230942 aa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25855271 2 +  99763055 aa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        13774 2 +    551209 aa
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170142357 2 - 171882078 aa
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1551797 2 +   1584492 at
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36260531 2 -  75399963 aa
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       115491 2 +    138091 at
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1395764 2 +   5228064 aa
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        47011 2 -     60449 aa
i calJac3.chrUn_GL286477    C 0 I 4
s saiBol1.JH378108           10492274 2 -  54856640 ag
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018512720v1      1166284 0 -   3863790 I
e cebCap1.NW_016107859v1       802833 2322 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=718050.000000
s hg38.chr15_KI270851v1_alt    112547 145 +    263054 cccacctcctttgaagatacagagtatttctatcatccagaaagttctcctgtgctttcatgc-tgtcccgcactcccccagCAGCTGATGAACATGCTGAGGACATTGGTACTGGATTCTGGCCGCCCCAAAAGAGCCGCTTTGA
s panTro5.chr15               9369502 145 +  83230942 cccacctactttgaagatacagagtatttctatcatccagaaagttctcctgtgctttcatgc-tgtcccgcactcccccagcagcTGATGAACATGCTGAGGATATTGGTACTGGATTCTGGCCGCCCCAAAAGAGCCGCTTTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25855273 145 +  99763055 cccacctcCTTTGAagatatagagtatttctatcatccagaaagttctCCTATGCTTTCATCC-TGTCTGGCACTCCCCCAGCAGCTGAAGAAGGTGCTGAGGACATTGGTACAGGATTCTGGCCTCCCCAGAAGAGCTGCTTTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        13776 145 +    551209 cccacctcctttgaagatacagagtatttctatcatccagaaagttctcctgtgctttcatgc-tgtcccgcactcccccagcagcTGATGAACATGCTGAGGACATTGGTACTGGATTCTGGCCGCCCCAAAAGAGCCGCTTTGA
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170142359 145 - 171882078 cccacctcctttgaagatatagaacattcctatcatccagaaagttctcctgtgctttaaccc-tgtccggcactcccccaGCAGCTGATGAACCTGCTGTCGACATTGGTACAGGATTCTGGCCTCCCCAAAAGAGCTGCTTTGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1551799 145 +   1584492 cccacctcctttgaagatacagaatattcctatcatccagaaagttctcctgtgctttaaccc-tgtccggcactcccccaGCAGCTGATGAACCTGCTGACGACATTGGTACATGATTCTGGCCTCCCCAAAAGAGCTGCTTTGA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36260533 142 -  75399963 cccacctcCTTTGAagatacagaacatttctatcatccagaaagtt---ctgtGCTTTAATCC-CATCTGGCACTCCCCCAGCAGCTGAGGAACGTGCTGAGGACATTGGTACAGGATTCTGGCCTCCCCAAAACAGCTGCTTTGA
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       115493 145 +    138091 cccacctcctttgaagatacagaatattcctatcatccagaaagttctcctgtgctttaaccc-tgtccggcactcccccaGCAGCTGATGAACGTGCTGAGGACATTGGTACAGGATTCTGGCCTCCCCAAAAGAGCTGCTTTGA
i manLeu1.NW_012101289v1    C 0 I 5504
s colAng1.NW_012115722v1      1395766 142 +   5228064 cccacctcCTTTGAagatatagaacatttctatcatccagaaactt---ctgtGCTTTCATCC-TATCTGGCACTCCCCCAGCAGCTGACGAACGTGCTGAGGACATTGGTACAGGATTCTGGCCTCCCCAAAACAGCTGCTTTGA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        47017 143 -     60449 ctccccTCCTTTCAagatacagaacatttctatcatccagaaagtt---ctgtGCTTTAATCCTTGTCCTACACTCTTACAGCAGCTGCTGCACATGCTGAGGACATTGGCACAGAACTCTGGCCTCCCTAACAGAGCTGCTTTCA
i calJac3.chrUn_GL286477    I 4 C 0
s saiBol1.JH378108           10492276 145 -  54856640 cccaccTCCTTTCAagatatagaatatttctctcatccagaaagttctcctgggcTTCAATCC-TGTcctgcactcctgcagcagctgctgaacgtgctgaggacactgacacaggactctggcctccccaggagagctgctttca
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       805155 143 -   1271737 cccacctcctttcaagatatagaatatttctatcatccagaaagttctCCTGTGCTTCAATCC-TGTCCTGCACTCCCCCAGCCGCTGCTGAACGTGCTGAGGACATTGACACAGGA--CTGGCCTCCCCAAAAGAGCTGCTTTCA
i cebCap1.NW_016107859v1    I 2322 C 0
e aotNan1.NW_018512720v1      1166284   0 -   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=-26499.000000
s hg38.chr15_KI270851v1_alt    112692  5 +    263054 CCA--------GG---------
s panTro5.chr15               9369647  5 +  83230942 CCA--------GG---------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25855418 13 +  99763055 CAAGCCTTCTTGC---------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        13921  5 +    551209 CCA--------GG---------
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170142504  4 - 171882078 CAA--------A----------
i macFas5.chr7              C 0 I 9
s cerAty1.NW_012002601v1      1551944  4 +   1584492 GAA--------G----------
i cerAty1.NW_012002601v1    C 0 I 9
s chlSab2.chr5               36260675  4 -  75399963 CAA--------G----------
i chlSab2.chr5              C 0 I 9
s colAng1.NW_012115722v1      1395908  4 +   5228064 CAA--------G----------
i colAng1.NW_012115722v1    C 0 I 9
s calJac3.chrUn_GL286477        47160 13 -     60449 CAA--------G-CCTGCTTGC
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10492421 12 -  54856640 caa--------g-cctgctt-c
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       805298 12 -   1271737 CAA--------G-CCTGCTT-C
i cebCap1.NW_016107859v1    C 0 C 0
e aotNan1.NW_018512720v1      1166284  0 -   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       115638 5504 +    138091 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=850405.000000
s hg38.chr15_KI270851v1_alt    112697 175 +    263054 CTTACCCAGCACTAAATCC-----CTGCCTGCTCTCTCAAAATTTCCATCTTTAAACTGGTTGTACC--TATAACCCTCCCTCATCAAGTCAATAGATAAACAAACCCTGAAAAATAAACAACTCTTCCTGGCCCAGCAGCCCACAGCCTAATATTTACTGTATTCCCAGGCTTTCAGAAAT
s panTro5.chr15               9369652 175 +  83230942 CTTACCCAGCACTAAATCC-----CTGCCTGCTCTCTCAAAATTTCCATCTTTAAACTGGTTGTACC--TATAACCCTCCCTCATCAAGTCAATAGATAAACAAACCCTGAAAAATAAACAACTCTTCCTGGCCCAGCAGCCCACAGCCTAATATTTACTGTATTCCCAGACTTTCAGAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25855431 175 +  99763055 CTTACCCAGCACTAAATCC-----CTGCCTGCTCTCTCAAAATTTCCATCTTTAAACTGGTTATACG--TATAACCCTCCCTCATCAAGTCAATAGATAAACAAACCCTGAAAAATAAACAACTCTTCCTGGCCCAGCAGCCCACAGCCTAATATTTACTGTATTCCCAGACTTTCAGAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        13926 175 +    551209 CTTACCCAGCACTAAATCC-----CTGCCTGCTCTCTCAAAATTTCCATCTTTAAACTGGTTGTACC--TATAACCCTCCCTCATCAAGTCAATAGATTAACAAACCCTGAAAAATAAACAACTCTTCCTGGCCCAGCAGCCCACAGCCTAATATTTACTGTATTCCCGGGCTTTCAGAAAT
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170142517 173 - 171882078 CTTACCCAGCACTAAGTCC-----CTGTCTGCTCTCTCAAAATTTCCATCTTTAAACTGGTTGTACC--TATAACCCTCCCTCATCAAGTCAATAGATAAACAAACCCTG-GAAAAAAACACCCCTTCCTGGCCCAGCAGCCCACAGCCTAATCTTTCCTGTATCCCCA-ACTATCAGACAT
i macFas5.chr7              I 9 C 0
s cerAty1.NW_012002601v1      1551957 173 +   1584492 CTTACCCAGCACTAAGTCC-----CTGCCTGCTCTCTCAAAATTTCCATCCTTAAACTGGTTGTGCC--TATAACCCTCCCTCATCAAGTCAATAGACAAACAAACCCTG-AAAATAAACACCCCTTCCTGGCCCAGCAGCCCACAGCCTAATCTTTCCTGTAACCCCA-ACTCTCAGAAAT
i cerAty1.NW_012002601v1    I 9 C 0
s chlSab2.chr5               36260688 175 -  75399963 TTTCCCCAGCGCGAAATCC-----CTGCCTGCTCTCTCAAAATTTCCATCTTTAAACTGGTTGTACC--TACAACCCTCCCTCATCAAGTCAATAGATAAATAAACCCTGAAAAATAAACACCCTTTCCTGGCCCAGCAGCCCACAGCCTAATACTTACTGTATATCCACGCTTTCAGAAAT
i chlSab2.chr5              I 9 C 0
s manLeu1.NW_012101289v1       121142 169 +    138091 CTTACCCAGCACTAAGTCC-----CTGCCTGCTCTCTCAAAATTTCCATCCTTAAACTGGTTGTGCC--TATAACCCTCCCTGGTCAAGTCAGTAGATAAAT----CCTG-AAAACAAACACCCCTTCCTGGCCCAGCAGCCCACAGCCTAATCTTTCCTGTATCCCCA-ACTATCAGAAAT
i manLeu1.NW_012101289v1    I 5504 C 0
s colAng1.NW_012115722v1      1395921 175 +   5228064 TTTACCCAGCACTAAATCC-----CTGCCTGCTCTCTCAAAATTTCCATCTTTAAACTGGTTGTACC--TACAACCCTCCCTCATCAAGTCAATAGATAAATAAACCCTGAAAAATAAACACCCCTTCCTGGCCCAGCAGCCCACAGCCTAATATTTACTGTATGCCCACACTTTCAGAAAT
i colAng1.NW_012115722v1    I 9 C 0
s calJac3.chrUn_GL286477        47173 177 -     60449 CTTCCCCAGCACTAAATCC-----CTGCTTGCTCTCTCAAACTTGCCATCTTTAAACTGGTTGTACCTATATAACCTTCCCTCATCAATTCAATAGGTAAACAAACCCTGAAAAACAAACACTCCTTCCTGGCCCAGCAGCCCACAGCCTAATACTTACTGTATACCCAAGCTTTTAGAAAT
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10492433 176 -  54856640 cttccccagcgctaaattcCATTTCTGCCTGCTGTCTCAAAATGTCCATCTCTCAGCTGGTTGTGCC--TATAATCCTCCTTCATCAATTCA----GTAGATAACCCCTGAAAAACAAACACTCCTTCCTGGCCCAGCAGCCCGCAGCCTGATACTCACTGTATACCCAAGCTTTCAGAAAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       805310 176 -   1271737 CTTCCCCAGCGCTAAATTCCATTTCTGCCTGCTGTCTCAAAATGTCCATCTCTAAGCTGGTTGTACC--TGTAATTCTCCTTCATCAATTCA----GTAGATAACCCTTGAAAAGCAAACACTCCTTCCTGGCCCAGCAGCCCACAGCCTAATACTCACTGTATACCCAAGCTTTCAGAAAT
i cebCap1.NW_016107859v1    C 0 I 132
e aotNan1.NW_018512720v1      1166284   0 -   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=13331.000000
s hg38.chr15_KI270851v1_alt    112872 5 +    263054 GTAAC
s panTro5.chr15               9369827 5 +  83230942 GTAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25855606 5 +  99763055 GTAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        14101 5 +    551209 GTAAC
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170142690 5 - 171882078 GTCAC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1552130 5 +   1584492 GTCAC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36260863 5 -  75399963 GGAAC
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       121311 5 +    138091 GTCAC
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1396096 5 +   5228064 GGAAC
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        47350 5 -     60449 ACAAC
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10492609 5 -  54856640 ACAAC
i saiBol1.JH378108          C 0 I 121
e aotNan1.NW_018512720v1      1166284 0 -   3863790 I
e cebCap1.NW_016107859v1       805486 132 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=29683.000000
s hg38.chr15_KI270851v1_alt    112877 11 +    263054 TCGCCTGCCGG
s panTro5.chr15               9369832 11 +  83230942 TCGCCTGCCGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25855611 11 +  99763055 TCGCCTGCCGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        14106 11 +    551209 TCGCCTGCCGG
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170142695 11 - 171882078 TCGCCGGCTGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1552135 11 +   1584492 TCGCCTGCTTG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36260868 11 -  75399963 TTGCCTGCTTG
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       121316 11 +    138091 TCGCCTGCTTG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1396101 11 +   5228064 TCGCCTGCTTG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        47355  5 -     60449 ------GCGAC
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10492735 11 -  54856640 TCTCCTGCTCC
i saiBol1.JH378108          I 121 C 0
e aotNan1.NW_018512720v1      1166284  0 -   3863790 I
e cebCap1.NW_016107859v1       805486 132 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=126906.000000
s hg38.chr15_KI270851v1_alt    112888 27 +    263054 TTCACCCTCACTAGGG--CGGCAGCTGCA
s panTro5.chr15               9369843 27 +  83230942 TTCACCCTCACTAGGG--CGGCAGCTGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25855622 27 +  99763055 TTCACCCTCACTAGGG--CGGCAGCTGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        14117 27 +    551209 TTCACCCTCACTAGGG--CGGCAGCTGCA
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170142706 27 - 171882078 TTCACCCTCACTAGGG--TGGCAGTTGTA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1552146 27 +   1584492 TTCACCGTCACTAGGG--TGGCAGCTGCA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36260879 27 -  75399963 TTCACCCTCACTAGGG--TGGAAACTGCA
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       121327 27 +    138091 TTCACCGTCACTAGGG--TGGCAGCTGCA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1396112 27 +   5228064 TTCACCCTCACTAGGG--TGGCAACTGCA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        47360 27 -     60449 TT--GCAGGGGTAGGGCCTGGCAGCTGCA
i calJac3.chrUn_GL286477    C 0 I 128
s saiBol1.JH378108           10492746 27 -  54856640 TTCACCCTCACTAGGG--TGGCAGCTGCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       805618 27 -   1271737 TTCACCCTCGCTAGGG--TGGCAGCTCCA
i cebCap1.NW_016107859v1    I 132 C 0
e aotNan1.NW_018512720v1      1166284  0 -   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=175712.000000
s hg38.chr15_KI270851v1_alt    112915 44 +    263054 CGGGAGCAGCTGGGCTCACCCATTAAGCAAGAAGCCAATAGCTG
s panTro5.chr15               9369870 44 +  83230942 CGGGAGCATCTGGGCTCACCCATTAAGCAAGAAGCCAATAGCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25855649 44 +  99763055 CGGAAGCAGCTGGGCTCACCCATTAAGCAAGAAGCCAATAGCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        14144 44 +    551209 CGGGAGCAGCTGGGCTCACCCATTAAGCAAGAAGCCAATAGCTG
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170142733 44 - 171882078 CAGGAGCAGCTGGGCTGACCTGTTAAGCAAGAAGCCAATAGCTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1552173 44 +   1584492 CAGGAGCAGCTGGGCTCACCTGTTAAGCAAGAGGCCAATAGTTG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36260906 44 -  75399963 CAGGAGCAGCTGGGCTCACCCATTAAGCAAGAAGCCAACAGCTG
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       121354 44 +    138091 CAGGAGCAGCTGGGCTCACCTGTTAAGCAAGAGGCCAATAGCTG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1396139 44 +   5228064 CAGGAGCAGCTGGGCTCACCCAATAAGCAAGAAGCCAATAGCTG
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10492773 44 -  54856640 TGGCGGCAGCTGGGCTCCCTCCTTAAGCCAGAAGCCCTTGGCGA
i saiBol1.JH378108          C 0 I 4481
s cebCap1.NW_016107859v1       805645 44 -   1271737 TGGCAGCAGCTGGGCTCCCTCCTTAAGCCAGAAGCCCTTGGCTA
i cebCap1.NW_016107859v1    C 0 C 0
e aotNan1.NW_018512720v1      1166284  0 -   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e calJac3.chrUn_GL286477        47387 128 -     60449 I

a score=58980.000000
s hg38.chr15_KI270851v1_alt    112959 12 +    263054 GACAGTGACACT
s panTro5.chr15               9369914 12 +  83230942 GACAGTGACACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25855693 12 +  99763055 GACAGTGACACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        14188 12 +    551209 GACAGTGACACT
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170142777 12 - 171882078 GACAGTGACACT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1552217 12 +   1584492 GACAGTGACACT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36260950 12 -  75399963 GACAGTGACACT
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       121398 12 +    138091 GACAGTGACACT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1396183 12 +   5228064 GACAGTGACACT
i colAng1.NW_012115722v1    C 0 C 0
s saiBol1.JH378108           10497298 12 -  54856640 GACACTGACACT
i saiBol1.JH378108          I 4481 C 0
s cebCap1.NW_016107859v1       805689 12 -   1271737 GACACTGACACT
i cebCap1.NW_016107859v1    C 0 C 0
e aotNan1.NW_018512720v1      1166284  0 -   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e calJac3.chrUn_GL286477        47387 128 -     60449 I

a score=2912840.000000
s hg38.chr15_KI270851v1_alt    112971 610 +    263054 CAGACCCCAGCCTGGGCGAGCCTGGCTGAAAGCCC--CCTTCTTT-CCATCCGACTGTGGAGAAAGGGGGCGGAGCACACACAACTCTACTGCCCTCCACATCCTTCACCTGTGCTTCCTCCTGGGAGAGGGAGCCGCTCCTTAATTTGGCCAAAGCCTTCTTGAGGGCTGTAGGTTTCACAGGCTGGGTGTGTGGGGG-CCACCGTGCTAGAGACAGAGGCTGGTGTGTCAGAAGGCAGCCACCTGGCCAGAGGGGGGTTAACCCCCTTGGTGACCTCCTTCCCCCGGCTGGACAC-AGTGCCCTGCACTCTCTACATGTGACTGTTCCCCTCAGAGCTGCTTCCAGGGGAGGGGTTCTAATCCTGTGGGTGGGGACATTGTGTTACTTTACA---GTGGGCCATGGCTC---CCTCTGACATCTCCAACTCAGAGGCAGTAGAGAGAAGATGAGAAATTCCCTGCC---CCTCCT---C---CTTCAGCACCCCCACCTCTGCACACGTCCACATGTGGAGACCCTGACAATGGGCCCTGGGAGTGCCGCCATCTGTGCCTG-------------------CTTTCCATGCCTGCAGCAGCCATGCCCACTCTCCAGACCCTCACCCGCCTGGGTCAGTAGACGCTT
s panTro5.chr15               9369926 610 +  83230942 CAGACCCCAGTCTGGACGAGCCTGGCTGAAAGCCC--CCTTCTTT-CCATCCGACTGTGGAGAAAGGGGGCGGAGCACACACAACTCTACTGCCCTCCACATCCTTCACCTGTGCTTCCTCCTGGGAGAGGGAGCCGCTCATTAATTTGGCCAAAGCCTTCTTGAGGGCTGTAGGTTTCATAGGCTGGGTGTGTGGGGG-CCACCGTGCTAGAGACAGAGGCTGGTGTGTCAGAAGGCAGCCACCTGGCCAGGGGAGGGTCAACCCCCTTGGTGACCTCCTTCCCCCGGCTGGACAC-AGTGCCCTGCACTCTCTACATGTGACTGTTCCCCTCAGAGCTGCTTCCAGGGGAGGGGTTCTAATCCTGTGGGTGGGGACATTGTGTTACTTTACA---GTGGGCCATGGCTC---CCTCTGACATCTCCAACTCAGAGGCAGTAGAGAGAAGATGAGAAATTCCCTGCC---CCTCCT---C---CCTCAGCACCCCCACCTCTGCACACGTCCATATGTGGAGACCCTGACAATGGGCCCTGGGGGTGCCGCCATCTGTGCCTG-------------------CTTTCCATGCCTGCAGCAGCCATGCCCACTCTCCAGACTCTCACCCGCCTGGGTCAGTAGACGCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25855705 610 +  99763055 CAGACCCCAGTCTGGATGAGCCTGGCTGAAAGCCC--CCTTCTTTCCCGTCTGACTGTGGAGAAAGGGGGCGGAGCACACACAACTCTACTGCCCTCCGCATCCTTCAGCTGTGCTTCCTCCTGGGAGAGGGAGCCACTCATTAATTTGGCCAAAGCCTTCTTGAGGGCTGTAGGTTTCACAGGCTGGGTGTGTGGGGG-CCACCATGCTAGAGG-AGAGGCTGGTGTGTCAGAAGGCAGCCACCTGGCCAGGGGAGGGTCAACCTGCTTGGTGACCTCCTTCCCCCGGCTGGACAC-AGCGCCCTGCACTCTCTACATGTGACTGTTCCCCTCAGAGCTGCTTCCAGGGGAGGGGTTCTAACCCTGTGGGTGGGGACATTGTGTTACTTTACA---GTGGGCCATGGCTC---CCTCTGACATCTCCAACTCAGAGGCAGTAGAGAGAAGATGAGAAACTCCATGCA---CCTCCT---C---CCTCAGCACCCCCACCTCTGCACACGTCCACATATGGAGACCCTGACAATGGGCCCTGGGAGTGCCGCCATCTGCGCCTC-------------------CTTTCCATGCCTGCAGCAGCCATGCCCACTCTCCAGACCCTCACCCGCCTCGCTCAGTAGACACTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        14200 610 +    551209 CAGACCCCAGCCTGGGCGAGCCTGGCTGAAAGCCC--CCTTCTTT-CCATCCGACTGTGGAGAAAGGGGGCGGAGCACACACAACTCTACTGCCCTCCACATCCTTCACCTGTGCTTCCTCCTGGGAGAGGGAGCTGCTCATTAATTTGGCCAAAGCCTTCTTGAGGGCTGTAGGTTTCACAGGCTGGGTGTGTGGGGG-CCACCGTGCTAGAGACAGAGGCTGGTGTGTCAGAAGGCAGCCACCTGGCCAGAGGGGGGTCAACCCCCTTGGTGACCTCCTTCCCCCGCCTGGACAC-AGTGCCCTGCACTCTCTACATGTGACTGTTCCCCTCAGAGCTGCTTCCAGGGGAGGGGTTCTAATCCTATGGGTGGGGACATTGTGTTACTTTACA---GTGGGCCATGGCTC---CCTCTGACATCTCCAACTCAGAGGCAGTAGAGAGAAGATGAGAAATTCCCTGCC---CCTCCT---C---CCTCAGCACCCCCACCTCTGCACACATCCACATGTGGAGACCCTGACAATGGGCCCTGGGAGTGCCGCCATCTGTGCCTG-------------------CTTTCCATGCCTGCAGCAGCCATGCCCACTCTCCAGACCCTCACCCGCCTGGGTCAGTAGACGCTT
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170142789 595 - 171882078 CAGACCCCAGCCTGGGAGAGCCTGGCTGAAAGCCC--CCTTCTTTCTGGTCTGACTGTGGAGAGAGGGGGCGGAGCATCCACAACTCTACTACCCTCCGCATCCTTCAGCTGTGCTTCCTCCTGGGAGACGGAGCTGTTCGTTTATTTGGCCAAAACTTTCTTGAGGGCTGTA--------------GGTGTGTGGGGG-CCACTGTGCTAGAGAGAGAGGCTGGTGTGTCAGAAGGCAGCCACCTGGCCAGAGGAGGGTCAACCCCCTTGGTGTCCTCCTTCCCCTGGCTGGACAC-AGCGCCCTGCACTCTCCACATGTGACTGCTCCCCTCAGAGCCGCTTCCAGGGGAGGGGTTCTAACCCTGTGGGTGGGGACACTGTGTTAGTTTACA---GTGGGCCATGGCTC---CCTCTGACATCTCCAACTCAGAGGCAGTGGAGAGAAGATGAGAAATTCCCTGCA---CCTCCT---C---CCTCAGCA--CCCACCTCTGCACACATCCACATATGGAGACCCTGACGGTGGTCCCTGGGAGTGCCGCCATCTGTGCCTC-------------------CTTTCCATGCCTGCAGCAGCCATGCCCATTCTCCAGACCCTCACCCACCTGGCTCAGTAGAGGCTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1552229 600 +   1584492 CAGACCCCAGCCTGGGTGAGCCTGGCTGAAAGCCC--CCTTCTTTCCGGTCCGATTGTGGAGAGAGGGGGTGGAGCATCCACAACTCTACTGCCCTCCGCATCCTTCAGCTGTGCTTCCCCCTGGGAGACGGAGCTGTTCATTCATTTGGCCAAAGCCGCCTTGAGGGCTGTAGGTTTGACAGGCTGGGTGTGTGGGGG-CCACCGTGCTAGAGAGAGAGGCTGGTGTGTCAGAAGGCAGCCACCTGGCCAGAAGAGGGGCAACCTC---------------CCCCTGGCTGGACAC-AGTGCCCTGCACTCTCCACATGTGACTGCTCCCCTCAGAGCCGCTTCCAGGGGAGGGGTTCTAACCCTGTGGGTGGGGACACTGTGTTAGTTTACACAGAGGGGCCATGGCTC---CCTCTGACATCTCCAACTCAGAGGCAGTGGAGAGAAGATGAGAAATTCCCTGCACCTCCTCCT---C---CCTCAGCA--CCCACCTCTGCACACATCCACATACGGAGACCCTGATGGTGGTCCCTGGGAGTGCCGCCATCTGCGCCTC-------------------CTATCCATGCCTGCAGCAGCCATGCCCACTCTCCAGACCCTCACCCACCTGGCTCAGTAGAGGCTG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36260962 634 -  75399963 CAGACCCCAGCCTGGGTGAGCCTGGCTGAAAGCCC--CCTTCTTTCCGGTCCGACTGTGGAGAGAGGGGGTGGAGCACACACAACTCTACTGCCTTCCACATCCTTCAGCTGTGCTTCCTCTTGGGAGAGGGAGTCACTCATTAATTTGGCCAAAGCCTTCTTGGGGTCTGTAGGTTTGACAGGCTGAGTGTGTGCGGG-CCACCATGCTAGAGAGAGAGGCTGGTGTGTCAGGAGGCAGCCACCTGGCCAGAGGAGGGTCAGCCCCCTTGGTGACCTCCTTCCCCCTGCAGGACACAAGCACCCGGCACTCTTCACTTGTGACTGCTCCTCTCAGAGCTGCCTCCAGGGGGGGGAGTCTAACCCTGTGGGTGAGGACATTGTGTTAGTTTACA---GTGGGCCACGGCTC---CCTCTGTCATCTCCAACTCAGAGGCAGTAGAGAGAAGATGAGAAATTCCCTGCA---CCTCCTTCCT---CCTCAGCACCCCCACCTCTGCACATGTCTACACATGGAGACCCTGACAATGGTCCCTGGGAGAGCCGCCATCTGCGCCTCCTTTCCATATCTGCGCCTGCTTTCCATGCCTGCAGCAGCCATGCCCACTCTCCAGACCCTCACCCTCCTGGCTCAGTAGAGGCTG
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       121410 606 +    138091 CAGACCCCAGCCTGGGTGAGCCTGGCTGAAAGCCC--CCTTCTTTCAGGTCCCACTGTGGGGAGAGGGGGCGGAGCATA---AACTCTACTGCCCTCCACATCCTTCAGCTGTGCTTCCTCCTGGGAGACGGAGCTGTTCATTCATTTGGCCAAAGCCTTCTTGAGGGCTGTAGGTTTGACAGGCTGGGTGTGTGGGGG-CCACCGTGCTAGAGAGAGAGGCTGGTGTGTCAGAAGGCAGCCACCTGGCCAGAAGAGGGGCAACCCCCTTGGTGTCCTCCTTCCCCTGGCTGGACAC-AGCGCCCTGCACTCTCCACATGTGACTGCTCCCCTCAGAGCCGCTTCCAGGGGAGGGGTTCTAACCCTGTGGGTGGGGACACTGTGTTAGTTTACA---GTGGGCCATGGCTC---CCTCTGACATCTCCAACTCAGAGGCAGTGGAGAGAAGATGAGAAATTCCCTGCA---CCTCCT---C---CCTCAGCA--CCCACCTCTGCACACATCCACATATGGACACCCTGACGGTGGTCCCTGGGAGTGCCGCCATCTGCGCCTC-------------------CTTTCCATGCCTGCAGCAGCCATGCCCACTCTCCAGACCCTCACCCTCCTGGCTCAGTAGAGGCTG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1396195 587 +   5228064 CAGACCCCAGCCTGGGTGAGCCTGG-TGAAAGCCC--CCTTCTTTCCGGTCCCACTGTGGAGAGA-GGGGTGGAGCACACACAACTCCACTGCCTTCCACATCCTTCAGCTGTGCTTCCTCCTGGGAGAGGGAGTCGCTCATTAATTTGGCCAAAGCCTTCTTGGGGTCTGTAGGTTTGACAGGCTGGGTGTGTGCGGG-CCACCGTGCTAGAGAGAGAGGCTGGTATGTC---AGGCAGCCACCT-----------------------TGGTGACCTCCTTCCCCCTGCAGGACACAAGCACCCGGCACTCTTCACTTGTGACTGCTCCTCTCAGAGCTGCCTCCAGGGGAGGGCTTCTAGCCCTGTGGGTGGGGACATTGTGTTAGTTTACA---GCGGGCCACGGCTC---CCTCTGTCATCTCCAACTCAGAGGCAGTAGAGAGAAGATGAGAAATTCCCTGCA---CCTCCTTCCT---CCTCAGCACCCCCACCTCTGCACACGTCCACACATGGAGACCCTGACAATGGTCCCTGGGAGAGCCGCCATCTGCGCCTC-------------------CTTTCCATGCCTGCAGCAGCCATGCCCACTCTCCACACCCTTACCCACCTGGCTCAGCAGGTGCTG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        47515 583 -     60449 CAGACCCCAGCCTGGGTGAG-----------------CCTCCCTTCCTGTCTGGCTGTGGAGGGAGGGAGCAGAGCATACACAGCTCCGCTGCCCTCCCAAAACTTCA-----GCCTCCTCCTGGGAGAGGGAGCCACTCATTAATCTGGACAAAGCCTTCTTGAGGGCTGTA-GTTTGACAGGCTGGGTGTGTGGGGGCCCACTGTGTTACAG--AGAGGCCGGTGTGTCAGAAGGCAGCCACCTGGCCAG---------AGCCTCTTTGGTGACCTCCTTCTCCCTTCCGGACAC-AGTGTCCTGCACTCTCCCCATGTGAATGCTCCCCTCAGAGCTGCATCCAGGGGTGAGGTTCTAACCCTATGGGTGGGGACATTGTGTTAGTTTACA---ATGGGCCATGGTTCCGTCATCTGACATCTCCAACTCAGAGTCAATAGAGACAA---GAGAAATTCCCTGCA---CCTCCT---CCCTCCTCAGCACCCCCACATCTGCACATATCCACATATGGAGACCCCGACATTGGTCCCTGGGAGTGCTGGCATCTGCGTCTC-------------------CTTTCCATGCCTACAGCAGCCATGCCCACTGTGCAGATCCTCCCCTTCCTGGCTTAGTGGGCACTG
i calJac3.chrUn_GL286477    I 128 C 0
s saiBol1.JH378108           10497310 599 -  54856640 CAGACCCCGGCCTGAGTGAGCCTGGCTGAAGGCCA--CCTTCCTTCCTGTCTGACTATGGAGGGAGGGAGCTGAGTGTACACAGCTCTAGTGCCCACCCCAAACGTCAGCTGTGCTTCCTCCCGGGAGAGGGAGCTGCTCATTAATTTGGCCAAAGCCTTCTTGAGGGCTGTA-GTTTGACAGGCTGGGTGTGTATGGGCCCACTGTGCTACAG--AGAGGCTGGTGTGTCAGAAGGCAGCCACCTGGCCAGAGCAGGGTCAGCCTCCTTGGTGACCGCCTTCTCCCTTCTGAACAC-AG-ATCTTGCACTCTCCCCATAGCAATGCTCCCCTCAGAACTGTGTCCGGGGGTGGGATTCTAACCCTGTGGGTGGGGACATTGTGTTAGTTGACA---ATGGGCCATGGTTC---GCTCTGA------CAACTCAGAGTCAGTAGAGAGAA---GAGAAATTCCCTGCA---CCTCCG---C---CCTCAGCACCCCCACCTGTGCACACACCCACATATGGAGACCCTGATATTGGTCCTTGGGAGTGCTGCCATCTGTGAGTC-------------------CGTTTCATGCCTGCAGCAGCCACGCCCACCGTCCAGACCCTCACCTACCTGTCTCAGTAGGCGCTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       805701 603 -   1271737 CAGACCCCAGCCTGGGTGAGCCTGGCTGAAGGCCCTTCCTTCCTTCCTATCTGACTGTGGAGGGAGGGAGCTGAGTGTACACAGCTCTACTGCCCACCCCAAACTTCAGCTGTACTTCCTCCTGGGAGAGGGAGCCGCTCATTAATTTGGCCAAAGCCTTCTTGAGGGCTGTA-GTTTGACAGGCTGGGTGTGTATGGGCCCACTGTGCTAC----AGAGTCTGGTGTGTCAGAAGGCAGCCACCTGGCCAGAGGAGGGTCAGCCTCCTTGGTGACCTCCTTCTCCCTTCTGGACAC-AG-ATCCTGCACTCTCCCCATATTAATGCTCCCCTCAGAACTGCTTCCAGGGGTGGAGTTCTAACCCTGTGGGTGGGAACATTGCGTTAGTTTACA---ATGGGCCATGGTTC---CCTCTGACATCTCCAACTCAGAGTCAGTAGAG--AA---GAGAAATTCCCTGCA---CCTCCT---C---CCTCAGCACCCCCACCTCTGCACACATCCACATATGGAGACCCTGACATTGGTCCCTGGGAGTGCTGCCGTCTGCACGTC-------------------CTTTTCATGCCTGCAGCAGCCACGCCCACCGTCCAGACCCTCACCTACCTGTCTCAGTAGGCGCTA
i cebCap1.NW_016107859v1    C 0 C 0
e aotNan1.NW_018512720v1      1166284   0 -   3863790 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=352879.000000
s hg38.chr15_KI270851v1_alt    113581 59 +    263054 CACTGCCTG-TGGTCCTGCG---CCTACACCTGGGCCTCTGTACCCGTCAGTTCCCCCAGTCT
s panTro5.chr15               9370536 59 +  83230942 CACTGCCTG-TGGTCCTGCG---CCTACACCTGGGCCTCTGTACCCGTCAGTTCCCCCAGTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25856315 59 +  99763055 CACTGCCTG-TGGTCCTGCG---CCTACACCTGGGCCTCTGTACCCGTCAGTTCTCCCAGTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        14810 59 +    551209 CACTGCCTG-TGGTCCTGCG---CCTACACCTGGGCCTCTGTACCCGTCAGTTCCCCCAGTCT
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170143384 60 - 171882078 CACTGCCCTGGGGTCCTGCC---CCTACACCTGGGCCTCTGTACCCATCAGTTCCCCCAGTCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1552829 59 +   1584492 CACTGCCCT-GGGTCCTGCC---CTTACACCTGGGCCTCTGTACCCATCAGTTCCCCCAGTCT
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36261596 59 -  75399963 CACTGCCTG-GGGTCCTGCC---CCTACACCTGGGCCTCTGTACCCGTCAGTTCCCCAAGTGT
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       122016 59 +    138091 CACTGCCCT-GGGTCCTGCC---CCTACACCTGGGCCTCTGTACCCATCAGTTCCCCCAGTCT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1396782 62 +   5228064 CACTGCCTG-TGGTCCCGCCACTACTACACCTGGGCCTCTGTACCCGTCAGCTCCCGAAGTCT
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        48098 59 -     60449 CACTGCCTC-TGGTCCTGCC---CCTACACCTGGGCCTCCGTATCCATCGGCTCCCCCAGTCT
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10497909 58 -  54856640 CGCTGCCTC-TGGTCCTGCC---CCTACACCTGGGCCTCTGTATCCATCGGTTCCCCCAGTC-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       806304 59 -   1271737 TGCTGCCTC-TGGTCCTGCC---CCTACACCTGGGCCTCTGTATCCATCGGTTCCCCCCGTCT
i cebCap1.NW_016107859v1    C 0 I 14
s aotNan1.NW_018512720v1      2614558 59 +   3863790 CACTGCCTC-TGGTCCTGCC---CCTACATCTGGGCCTCTGTATCCATCAGTTCCTCCAGTCT
i aotNan1.NW_018512720v1    I 694 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=66654.000000
s hg38.chr15_KI270851v1_alt    113640 20 +    263054 GGTTCT-TATTCCCTGCAAAG
s panTro5.chr15               9370595 20 +  83230942 GGTTCT-TATTCCCTGCAAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25856374 20 +  99763055 GGTTCT-TATTCCCTGCAAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        14869 20 +    551209 GGTTCT-TATTCCCTGCAAAG
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170143444 20 - 171882078 GGTTCT-TATTTCCCCCAACA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1552888 20 +   1584492 GGTTCT-TATTTCCCTCAACA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36261655 21 -  75399963 GGTTTTGTATTTCCCCCAATA
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       122075 20 +    138091 GGTTCT-TATTTCCCCCGACA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1396844 20 +   5228064 GGTTCT-TATTTCCCCCAATA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        48157 17 -     60449 ---AGT-TATTTTCCGCAACA
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10497967 14 -  54856640 -------TTTTTCCCCCGACA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2614617 20 +   3863790 GGTTCT-TATTTTCCCCAACA
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       806363 14 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=1364415.000000
s hg38.chr15_KI270851v1_alt    113660 230 +    263054 AGTAGGGAGCCTGTAAGGTCACCTGTTGAGCAAGCTGGGGGAGA-AAAGTAGGGTGGGGATGGGAGGATCAGGATGAGAAGCTCATGGTCGTGCTGGAGACTCAGCTGAGCAGAGTCTCTgcaggcccattggctgcctagccagtggtgatctcgctcccaccctcatttcttctttgttaacaaaaccatgacctcattaaatactggacacctataaacctcatggac
s panTro5.chr15               9370615 230 +  83230942 AGTAGGGAGCCTGTAAGGTCACCTGTTGAGCAAGCTGGGGGAGA-AAAGTAGGGTGGGGATGGGAGGATGAGGAGGAGAAGCTCATGGTCATGCTGGAGACTCAGCTGAGCAGAGTCTCTgcaggcccattggctgcctagccagtggtgatcctgctcccaccctcatttcttctttgttaacaaaaccatgacctcattaaatattggacacctataaacctcatggac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25856394 229 +  99763055 AGTAGGGAGCCTGTAAGGTCACCTGTTGAGCAAGCTGGGGGAG--AGAGTAGAGTGGGGATGGGAGGATGAGGAGGAGAAGCTCATGGTCATGCTGGAGACTCAGCTGAGCAGAGTCTCTgcaggcccattggctgcctagccagtggtgatcctgctcccaccctcatttcttctttgttaacaaaaccatgacctcattaaatattggacacctataaacctcatggac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        14889 227 +    551209 AGTAGGGAGCCTGTAAGGTCACCTGTTGAGCAAGCTGGGGGAGA-AAAGTAGGGTGGGGATGGGAGGATGAGGAGGAGAAGCTCATGGTCATGCTGGAGACTCAGCTGAGCAGAGTCTATgcaggcccattggctgcctagcca---gtgatctcgctcccaccctcatttcttctttgttaacaaaaccacgacctcattaaatattggacatctataaacctcatggac
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170143464 226 - 171882078 AGTAGGGAGCCTATAAGGTCACCTGCTGAGCAAGCTGGGGGAG--AGAGTAGGGCCGGGCTGGGAGGATGAGGAGGAGAAGCTTATGGTCCTGTTGGAGACTCAGCGGAGCAGAGTCTATgcagacccattggctgcctagccagtgctgatcctgctctcacactcgtttcttct---ttaacaaaaccatgacctcattaaatattggacacctacaaacctcatggac
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1552908 224 +   1584492 AGTAGGGAGCCGGTAAGGTCACCTGCTGAGCAAGCTGGGGGAG--AGAGTA-----GGGCTGGGAGGATGAGGAGGAGAAGCTTATGGTCGTGCTGGAGACTCAGCGGAGCAGAGTCTATgcaggcccattggctgcctagccagtggtgatcccgctcccaccctcatttcttctttgttaacaaaaccatgaccgcattaaatattggaaacctataaacctcatggac
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36261676 229 -  75399963 AGTAGGGAGCCTGTAAGGTCACCTGCTGAGCAAGCTgggggag--agagtagggcggggctgggaggatgaggaggaggagCTTATGGTTGTGCTGGAGACTCAGTGGAGCAGAGTTTATgcaggcccattggttgcctagccagtggtgatcccgctcccaccctcatttctttcttgttgacaaaaccatgacctcattaaatattggacacctataaacctcatggac
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       122095 229 +    138091 AGTAGGGAGCCGGTAAGGTCACCTGCTGAGCAAGCTGGGGGAG--AGAGTAGGGTGGGGCTGGGAGGATGAGGAGGAGAAGCTCATGGTCGTGCTGGAGACTCAGTGGAACAGAGCCTATgcaggcccattggctgcctagccagtggtgaacccgctcccaccctcatttcttctttgttaacaaaaccatggccttattaaatattggaaacctatacacctcatgtac
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1396864 229 +   5228064 AGTAGGGAGCCTGTAAGGTCACCTGCTGAGCAAGCTGGGGGAG--AGAGTAGGGCGGGACTGGGAGGATGAGGATGAGGAGCTTATGGTTGTGCTGGAGACTCAGAGGAGCAGAGTTTATgcaggcccattggttgcctagccagtggtgatcccgctcccaccctcatttctttcttgttaacaaaaccatgacctcattaaatattggacacctataaacctcatggac
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        48174 231 -     60449 ACTAGGGAGACTGTAAGATCACTTGTTGAGCACGCTGGGGGACAGAGCATAGGCTAGGGCTGAGAGAATGAGGAGGAGAAGCTTATGGTCGTGCTGGAAACTCAGCTGAGCAGAGTCTCTgcaggcccattggctgcccgtccagtggccgtcccgctcccaccctcatttcttctttgttaacaaaaccatgattttgttaaatattggacacctataaacttcatggac
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10497981 229 -  54856640 AGTTGGGAGCCTGTAAGGTCACGTGTTGAGCAAGCTGGAGGAC--AGCATAAGGTGGGGCTGTGAGGATGAGGAGGAGAAGCTGATGGTCGTGCTGCTGACTCAGCTGAGCGGAGTCTGTgcaggcccattggctgcccacctagcggccatcccgctcccaccctcatttcttctttgttaataaaaccatgacttcattaaatattggacacttacaagcttcatggac
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       806377 229 -   1271737 AGTTGGGAGCCTGTAAGGTCACCTGTTGAGTAAGTTGGAAGAC--AGCATAAGGTGGGGCTGTGAGGATGAGGAGGAGAAGCTGATGGTCGTTCTGGAGACCCAGCTGAGCGGAGTCTGTGCAGGCCCGTTGGCTGCCCACCCAGTGGCCATCCCGCTCCCACCCTCATTTCTTCTTTGTTAACAAAACCGTGACTTCATTAAATATTGGACACCTACAAGCTTCATGGAC
i cebCap1.NW_016107859v1    I 14 I 9
s aotNan1.NW_018512720v1      2614637 226 +   3863790 AGGAGGGAGCATGTAAGGTCACCTGTTGAGCAAGCTCGGAGAG--AGCATAGGGTGGGTCTGTGAGGACGAGGAGGAGAAGCTTATGGTCATGCTGGAGACTCAACTGAGCAGAGTCTGTgcaggcccattggctgcctacccagtggccatcctgctcctaacctcatttcttctttgtt---aaaaccatgacttcattaaatattggacacctataaacttcatggac
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=3469059.000000
s hg38.chr15_KI270851v1_alt    113890 724 +    263054 cctcctccagcctccccaccgtgtaccggtgagtctaagtcaactctagtcatttcattcctctggacattgactgcttagggcttgggcatgAGCTGCCTCTTCACCTGAGCCTGAGCCACAGGTACCCT----CTGCACCTACCACGCTGATGCACTGGGCCAGGGAGAGCGCCGTCTGGATGGAGATGAGCTGTGAGGAGCTGGTGGCTGGGCGGATCAGGTTGTTGTAACAGGTTTTGTTCAGAAGGTCGTCCATCAGTTTCTGCTCGGCATGGGC-CATGCGGCAGTCCCCTGGGTAAACA------------------CACAGACATGC---------------TGGGCCCTTG------------TGCAGCTGTCTCCCACTGCAGCTGACAGCTATGAAGCAGGAGCTGAGAGGGCCAGGGAGCACAGACACCCTGAGAGCTGGCTGAAGCAGTGAAGGTGCTGGCCGGCCTGGCTTTCCCTGGGGACTTCAAATGACATTCACGA-----------------CAGAGCTCAGCTAcctcctccccatgccatacctcttcctcctcctcctccctccGTCAATGAACAGCATCCCACGCTCTACACATCTGATACAAAACTGGGTGTCTCTTCCTGACTCCTCCCTTGGTTCACCCAAGTGGCCACCAAGTCCTGTCTGTCCTCCCATCTCCACGGCTACAGCCATGTCCCTGCCTCCCCCGCCCTGCCCACCTTCTGTTCtctccacctgcactctgcccctgccatccatgtgccataca
s panTro5.chr15               9370845 723 +  83230942 cctcctccagcctccccaccatgtactggtgagtctaagtcaactctagtcatttcattcctctggacattgactgcttagggcttgggcatgAGCTGCCTCTTCACCTGAGCCTGAGCCACAGGTACCCT----CTGCACCTACCACGCTGATGCACTGGGCCAGGGAGAGCGCCATCTGGATGGAGATGAGCTGTGAGGAGCTGGTGGCTGGGCGGATCAGGTTGTTGTAACGGGTTTTGTTCAGAAGGTCGTCCATCAGTTTCTGCTCGGCATGGGC-CATGCGGCAGTCCCCTGGGTAAACA------------------CACAGACATGC---------------TGGGCCCTTG------------TGCAGCTGTCCCCCACTGCAGCTGACAGCTATGAAGCAGGAGCTGAGAGGGCCAGGGAGCACAGAAACCCTGAGAGCTGGCTGAAGCAGTGAAGGTGCTGGCCGGCCTGGCTCTCCCTGGGGACTTCAAATGACATTCATGA-----------------CAGAGCTCAGCTAcctcct-cccatgccatacctcttcctcctcctcctccctccGTCAATGAACAGCATCCCACGCTCTACACATCTGATACAAAACTGGGTGTCTCTTCCTGACCCCTCCCTTGGTTCATATAAGTGGCCACCAAGTCCTGTGTGTCCTCCCACCTCCACGGCTACAGCCATGTCCCTGCCTCCCCCGCCCTGCCCACCTTCTATTCTCTCCACCTGCACTCTGCCCCTGCCATCCATGTGCCATACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25856623 717 +  99763055 cctcttccagcctccccaccgtgtactggtgagtctaagtcaactctagtcatttcattcctctggacattgactgcttagggcttgggcatgAGCTGCCTCTTCACCTGAGCCTGAGCCACAGGTGCCCT----CTGCACCTACCACGCTGATGCACTGGGCCAGGGAGAGCTCCATCTGGATGGAGATGAGCTGTGAGGAGCTGGCGGCTGGGCGGATCAGGTTGTGGTAACGGGTTTTGTTCAGAAGGTCGTCCATCAGCTTCTGCTCAGCA-GGGC-CACATGGCAGAACCCTGCATACACA------------------CACAGACCTGC---------------TTGGCCCTTG------------TGCAGCTGTCCCCCACTGCAGCTGACAGCTATGAAGCAGGAGCTGAGAGGGCCAGGGAGCACAGACACCCTGAGAGCTGGCTGAAGCAGTGAAGGTGCTGGCCGGCGTGGCTGTCCCTGGGGACTTCAAATGACATTCATGA-----------------CAGAGCCCAGCTAcctcctccccatgccatacctcttcctcctcctcctccctccGTCAATGAACAGCATCCCACGCTCTACACATCTGATACAAAACTGGGTGTCTCTTCCTGACCCCTCCCTTGGTTCATATAAGTGGCTACCAAGTCCTGTCAGTCCTC------CCACGGCTACAGCCATGTCCCTGCCTCCCCCGCCCTGCCCACCTTCTGTTCTCTCCACCCGCACTCTGCCCGTGCCATCCATGTGCCATACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        15116 720 +    551209 cctcctccagcctccccaccgtgtactggtgagtctaagtcaactctagtcatttcattcctctggacattgactgcttagggcttgggcatg-GCTGCCTCTTCGCCTGAGCCTGAGCCACAGGTGCCCT----CTGCACCTACCACGCTGATGCACTGGGCCAGGGAGAGCGCCGTCTGGATGGAGATGAGCTGTGAGGAGCTGGCGGCTGGGCGGATCAGGTTGT-GTAACGGGTTTTGTTCAGAAGGTCGTCCATCAGTTTCTGCTCGGCA-GGGC-CATGCGGCAGTCCCCTAGGTAAACA------------------CACAGACATGC---------------TGGGCCCTTG------------TGCAGCTGTCTCCCACTGCAGCTGACAGCTATGAAGCAGGAGCTGAGAGGGCCAGGGAGCACAGACACCCTGAGAGCTGGCTGAAGCAGTGAAGGTGCTGGCCGGCCTGGCTTTCCCTGGGGACTTCAAATGACATTCATGA-----------------CAGAGCTCAGCTAcctcctccccatgccatacctcttcctcctcctcctccctccGTCAATGAACAGCATCCCACGCTCTACACATCTGATACAAAACTGGGTGTCTCTTCCTGAC-CCTCCCTTGGTTCACCCAAGTAGCCACCAAGTCCTGTCTGTCCTCCCATCTCCACGGCTACAGCCATGTCCCTGCCTCCCCCGCCCTGCCCACCTTCTATTCTCTCCACCTGCACTCTGTCCCTGCCATCCATGTGCCATACA
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170143690 726 - 171882078 cctcctccagcctccccgccatgcattggtgagtctaagtcaactctagtcatttcattcctctggacactgattgcctggggcttaggcatgagcTGCTTCTTCAcctgagcctgagccacacgtgtcctgagcctgCACCTACCA-ACTGATGCACTGGGCCAGGGAGAGCTCCGTATCGATGGAGATGAGCTGTGAGGAGCTGGTGGCTGGGTGGATCACGTTGTTGTAACGGGTTTTGTTCAGAGGGTCATCCATCAGCTTCTGCTCGGCATGGAC-CATGCAGCAGTCCCCTGGCTAAACA------------------CACAGACATGC---------------TAGGCCCTTG------------AGCAGCTGTCCCCCACTGCAGCTGACAGCTATGAAGCAGGAGCCGAGAGGGCCAGGGAGCACAGGCACCCCGAGGGCCAGCTGAAGCAGTGAAGGCGGTGGCGGGCCTGGCTCTCCCTGGGGACTTCAAATGACATTCATG-----------------ACAGAGCTCAGTTAcctcct-cccatgcctcacctcttcctcctcctcctccCTCGATCAATGAACAGCATCCCACGCTCCACACATCTGATACAAAACTGGGTGTCTCTTCCAGACTCCTCCCTTGGTTCATTCAAGTGGCCACCAAGTCCTGTCTGTCCTCCCATCTCCACGGCTACAGCCATGTCCCTGCCTCCCCTGCCCTGTCCACCTTCTGTTCTCTCCACCCGCACTCTGTCCCCGCCATCCATGTGCCATACA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1553132 737 +   1584492 cctcctccagcct-cccgccatgcattggtgagtctaagtcaactctagtcatttcattcctccggacactgattgcctggggcttgggcatgAGCTGCCTCTTCACCTGAGCCTCAGCCACAGGTGTCCT----CTGCACCTACCA-ACTGATGCACTGGGCCAGGGACAGCTCCGTCTCGATGGAGATGAGCTGTGAGGAGTTGGTGGCTGGGTGGATCAGGATGTTGTAATGTGTTTTGTTCAGAGGGTCATCCATCAGCTTCTGCTCAGCATGGGC-CACGCGGCAGTCCCCTGGCTAAGAA------------------CACAGACATGC---------------TGGGCCCTTG------------TGCAACTGTCCCCCACTGCAGCTGACAGCTACAAAGTGGGAACTGAGAGGGCCAGGGAGCACAGGCACCCTGAGGGCCAGCTGAAGCAGTGAAGTTGCTGG-GGTTCTGGCTCTCCGTGGGGACTTCAAATGACATTCATGTATGGTTATTCATTCATGAATAGCTCAGCTAcctcct-cccatgccacacctcttcctcctgctcctccCTCGATCAGTGAACAGCATCCCACGCTCCACACATCTGATACAAAACTGGGTGTCTCTTCCAGACTTCTCCCTTGGTTCATTCAAGTGGCCACCAAGTCCTGTCTGTCCTCCCATCTCCACGGCTGCAGCCATGTCCCTGCCTCCCCTGCCCTGTCCACCTTCTGTTCTCTCCACCCGCACTCTGCCCCCGCCATCCATGTGCCGTACA
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36261905 723 -  75399963 tctcctctggcctccccgccctgtattgatgagtctaagtcaactctagtcatttcattcctctggatattgattgcttggggcttgggcatgAGTTGCCTCTTCACCTGAGCCTGAGCCACAGGTTCCCT----CTGCACCTACCACGCTGCTGCACTGGGTCAGGGAGAGCTCCGTCTCGATGGAGATGAGCTGTGACAAGCTGATGGCTGGGCGGATCGGGTAGTTGTAATGGGTCTTGTTCAGAAGGTCATCCATCAGCTTCTGCTCGGCATGGGC-CATGCAGCAGTCCCCTGGGTAAACA------------------CACAGACATGC---------------TGGGCCCTTG------------TGCAACTGTCCCCCACTGCAGCTGACAGCTACGAAGCGGGAGCCGAGAGGGCCAAGGAGCACAGCCACCCTGAGGGCCGGCTGAAGCAGCGAAGGCGCTGGCGGGTCTGGCTCTCTGTGGGGACTTCAAATGACATTAATGA-----------------CAGAGCTCAGCTAcctcct-cccatgccatacctcttcctcctcctcctctctcGATCAGTGAATAGCATCCCATGCTCTACACATCTGATACAAAACTGGGTGTCTCTTCCAGACCCCTCCCTTGGTTCATCCAAGTGGCCACCAAGTCCTGTCTGTCCTCCCATCTCCATGGCTACAGCCATGTCCCTGCCTCCTCCACCCTGCCCACCTTCTGTTCTCTCCACCCACATTCTGCCCCTGCCATCCATGTGCCCTGCA
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       122324 738 +    138091 cctcctccagcctccccgccatgtattggtgagtctaagtcaactctagtcatttcattcctccggacactgactgcctggggcttgggcatgAGCTGCCTCTTCACCTGAGCCTGAGCCACACGTGTCCT----CTGCACCTACCA-ACTGATGCACTGGGCCAGGGACAGCTCCGTCTCGATGGAGATGAGTTGTGAGGAGTTGGTGGCTGGGTGGATCAGGATGTTGTAATGGGTTTTGTTCAGAGGGTCATCCATCAGCTTCTGCTCAGCATGGGC-CACGCGGCAGTCCCCTGGCTAAGAA------------------CACAGACATGC---------------TGGACCCTTG------------AGCAGCTGTCCCCCACTGCAGCTGACAGCTACAAAGTGGGAACTGAGAGGGCCAGGGAGCACAGGCACCCTGAGGGCCAGCTGAAGCAGTGAACATGCTGG-GGTTCTGGCTCTCCCTGGGGACTTCAAATGACATTCATGAATGGTTATTGATGCATGAATAGCTCAGCTACCTCCT-CCCATGCCACACCTCTTCCTTCTGCTCCTCCCTCGATCAATGAACAGCATCCCACGCTCCACACATCTGATACAAAACTGGGTGTCTCTTGCAGACTCCTCCCTTGGTTCATTCAAGTGGCCACCAAGTCCTGTCTGTCCTCCCATCTCCATGGCTACAGTCATGTCCCTGCCTCCCCGGCCCTGTCCACCTTCTCTTCTCTCCACCCGCACTCTGCCCCCGCCATCCATGTGCCATACA
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1397093 723 +   5228064 tctcctccagcctccccgccctgtattgatgagtctaagtcaactctagtcatttcattcctctggatattgattgcttggggcgtgggcatgAGTTGCCTCTTCACCTGAGCCTGAGCCACAGGTTCCTT----CTGCACCTACCACGCTGATGCACTGGGCCAGGGAGAGCTCCGTCTCGATGGAGATGAGCTGTGAGGAGCTGGTGGCTGGGCGGATCAGGTTGTTGTAACGGGTTTTGTTCAGAAGGTCGTCAATCAGCTTCTGCTCGGCATGGGC-CATGCAGCAGTCCCCTGGGTAAACA------------------CATAGACATGC---------------TGGGCCCTTG------------TGCAACTGTCCCCCACTGCAGCTGACAGCTATGAAGCGGGAGCCGAGAGGGCCAGGGAGCACAGCCACCCTTAGGGCTGGCTGAAGCAGTGAAGGCGCTGGCGGGTCTAGCTTTCTGTGGGGACTTCAAATGACATTAATGA-----------------CAGAGCTCAGCTACCTCCT-CCCATACCATACCTCTTCTTCCTCCTCCTCTCTCGATCAATGAATAGTATCCCATGCTCTACACATCTGATACAAAACTGGGTGTCTCTTCCAGACCCCTCCCTTGGTTCATCCAAGTGGCTACCAAGTCCTGTCTGTCCTCCCATCTCCATGGCTACAGCCATGTCCCTGCCTCCTCCACCCTACCCACCTTCTCTTCTCTCCACCCACACTCTGCCCCTGCCATCCTTGTGCCATGCA
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        48405 703 -     60449 cctcctgcagcctcccttccatgtatcggtaagtctaagtcaactctagtcatttcattcctctggccaatgattgctgaggacttgggcatgAGCTGCCTCTTCACCTGAGTC--AGCCACAGCTGCCCT----CTGCACCTACCA--------CGCTGGGCCA-GGAGAGCTCCATCTTGATGGAGATGAGCTGTGAGGAGCTGGTGGCTGGGAAGATCAGGTGGTGGTAACGGGTTTTGTTCAGAAGGTTGTTCAGCAGCTTCTTCTTGGCCTTAGC-CACATGGCAGTCCCCTGGAAAAACA------------------CACAGACCTGC---------------TGGGCCCTTG------------TGCAACTG-CCCCCACTGTAGCTGACAGCTATGAACAGAGGGCCCAGAGGGCCAGGGAGCACAGGTGCCTCGAGGGCTGGCTGAAGCAGTGAATGTGCTGGCAGGCCTGACTCTCCCTGGGAACTTCAAATGACATTCAGGA-----------------CAGAGCTCATCTATATTCT-CCCATGCCAGAGGTCTTCCT-CTTTTCTTGTCTCGAGCAATGGATGGCATCCCATGCTGTACACATCTGATACAAAAC----TGTCTCTTCCTGACCCCTCCCTTGCTTCATCCAAGTAGCCACCGAGTCCTGTCTGTCCTCCCATCTCCACAGCTACAGCCATGTCTGTACCACGCCAGCCCTGCCCTCCTC---ATCTCTCCATCCATTCTCTGCCTCTGCCATCCATGTTCCAGACA
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10498210 750 -  54856640 tgtcctgccgtctccctgccatgtatcggtaagtctaagtcaactctggtcatttcattcctctggacaatgattgcttagggcttgggcatgAGCTGCCTCTTCGCCT--GTC--GGCCACAGCTGCCCT----CTGCACCTACCACGCTGATGCGCTGGGCCAGGGAGAGCTCCATCTCGATGGAGCCGAGCTGTGAGGAGCTGGTGGCTGGGAAGGTCAGGTGGTGGTAACAGGTTTTGTTCAGAAGGTTGTCCATCAG---TTTCTTGGCTTTGGCGCACGTGTCGGTCCCCTGGAAAAACAGACCTGTTTCTATTTTTCCAGGGGACTGCCTGTAAGGTCACCTGTAGGCTCTTTATAGCTGTCACCTGCAATTG-TCCCCACTGCAGCTGACAGCTACGAAGGGAGAGCCCAGAGGGCCAGGTAGCACAGGTGCCCTGAGGGCTGGCTGGAGCAGTGAAGGTACTGGCAGGCCTGGCTCTCCCTGGGGACTTCAAATGACATTTAAGA-----------------CACAGCTCACCTCTATCCT-CCCATGCCATAGCTCTTTCTCCTTCTCTTCCCTTGAACAATGAATGGCATGCCACGCTCCAAACATCTCGTATAAAACTGAGTGTCTCGTCCTGACCCCTTCCTTGGTTCAT-----------CTGAGTCCTCTCTGTCCTCCCATCTCCACCGCTACACCTATGTCCCTACCTCCCCAGCCCTGCCCACCTTCTGGTCTCTCCATCCATACTCTGCCCCTGCCATCCATGTACCATACA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2614863 715 +   3863790 cctcctgcagcctcccttccatgtattggtaagtctaagtcaactctagtcatttcattcctctggccaatgattgtttagggcttgggcatgAGCTGTCTCTTCACTTCAGCCTGAGCCACAGCTGCCCT----CTGCACCTACCACACTGATGCACTGGGCCAGGGAGAGCTCCATCTCAATGGAGATGAGCTATCAGGAACTGGTGGCTGGGAAGATCAGGTTGTGGTAATGGGTTTTGTTCAGAAGGTTGTCCATCAGCTTGTCCTTGGCATTAGGACA---GGCAATCCCCTGAGAAAACA------------------CACAGACCTGC---------------TGGGCCCTTG------------TGCAACTG-CCCACACTGCAGCTGACAGCTATGAA--GAGAGCCCAGAGGGCCAGGGAGCACAGGTGCCTCAAGGGCTGGCTGAAGCAGTGAATGTGCTGGCAGGCCTGGCTCTCCCTGGGGATTTCAAATGACATTCAAGA-----------------CAGAGCTCATCTATATTCT-CCTATGCCATAGATCTTCCTCCTTTTCTTCTCTCGGTCAATGGATGGCATCCCACGCTCTACACATTTGATACAAAACTGAGTGTCTCTTCCTGATCCCTCCCTTGCTTCATCCAAGTAGCCACCAAGTCCTGTCTGTCCTCTCATCTCCCCAGCTACAGCCATGTCAGTACCGCCCCAGCCCGGCCCTCCTT---GTATCTCCATCCATACTCTGCCCCTGCCATCCATGTACCATACA
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       806606   9 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=30498.000000
s hg38.chr15_KI270851v1_alt    114614 4 +    263054 gtgg
s panTro5.chr15               9371568 4 +  83230942 GTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25857340 4 +  99763055 GTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        15836 4 +    551209 GTGG
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170144416 4 - 171882078 GTGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1553869 4 +   1584492 GTGG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36262628 4 -  75399963 GTGG
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       123062 4 +    138091 GTGG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1397816 4 +   5228064 GTGG
i colAng1.NW_012115722v1    C 0 I 314
s calJac3.chrUn_GL286477        49108 4 -     60449 GTGG
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10498960 4 -  54856640 GTGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       806615 4 -   1271737 GTGG
i cebCap1.NW_016107859v1    I 9 C 0
s aotNan1.NW_018512720v1      2615578 4 +   3863790 GTGG
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=808333.000000
s hg38.chr15_KI270851v1_alt    114618 150 +    263054 cagactggtctttctacagcaaactggacgagggcCCTTCCCTACCCACAGCTCTCAGAGCTGGAGGTGGAGTTGAAGCTCA--TGTTTTGGCTTGGCATTCAGAGCTCTTTCCCCCTCAGCACTGGCTTATCCAGAGTGCTCACAGTGCAG----------
s panTro5.chr15               9371572 150 +  83230942 CAGACTGATCTTTCTACAGCAAACCGGACTAGGGCCCTTCCCTACCCACAGCTCTCAGAGCTGGAGGTGGAGTTGAAACTCA--TGTTTTGGCTTGGCATTCAGAGCTCTTTCCACCTCAGCACTGGCTTATCCAGAGTGCTCACAGTGCAG----------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25857344 150 +  99763055 CAGACTGGTCTTTCTACAGCAAACTGGACTAGGGCCCTTCCCTACCCACAGCTCTCAGAGCTGGAGGTGGAGTTGAAACTCA--TGTTTTGGCTTGGCATTCAGAGCTCTTTCCCCCTCAGCACTGGCTTATCCAGAGTGCTCACAGTGCAG----------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        15840 150 +    551209 CAGACTGATCTTTCTACAGCAAACTGGACTAGGGCCCTTCCCTACCCACAGCTCTCACAGCTGGAGGTGGAGTTGAAGCTCA--TGTTTTGGCTTGGCATTCAGAGCTCTTTCCCCCTCAGCACTGGCTTATCCAGAGTGCTCACAGGGCAG----------
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170144420 145 - 171882078 CAGACTGGTCTTTCTACAGCACACTGGACTAGCGCCCTTCCCTGCCCACAGCTCTCAGAGCTGGAGGTGGAGTTGAGACTCA-------TGGTTTGACATTCAGAGCTCTTTTTCCCTCGGCACTGGCTTATCCAGAGCGCTCACAGTGCGG----------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1553873 145 +   1584492 CAGACTGGTCTTTCTACAGCACACTGGACTAGCGCCCTTCCCTGCCCACAGCTGTCAGAGCTGGAGGTGGAGTTGAAACCCA-------CAGTTTGGCATTCAGAGCTCTTTCCCCCTCGGCACTGGCTTATCCAGGGCGCTCACAGTGCGG----------
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36262632 150 -  75399963 CAGACTGGTCTCTCTACAGCAAACTGGACTAGGGCCCTTCCCTGCCCACAGCTCTCAGAGCTGGAGGTGGAGTTGAAACTCA--TGTTTTGGCTTGGCATTTAGAGCTCTTTCCCCCTCGGCACTGGCTTATCCAGAGTGCTCACTGTGCAG----------
i chlSab2.chr5              C 0 C 0
s manLeu1.NW_012101289v1       123066 145 +    138091 CAGACTGGTCTTTCTACAGCACACTGGACTAGCGCCCTTCCCTGCCCACAGCTCTCAGAGCTGGAGGTGGAGTTGAAACTCA-------CGGTTTGGCATTCAGAGCTCTTTCCCCCTCGGCACTGGCTTCTCCAGAGCGCTCACAGTGCGG----------
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1398134 150 +   5228064 CAGACTGGTCTTTCTACAGCAAACTGGACTAGGGCCCTTCCCTACCCACAGCTCTCAGAGCTGGAGGTGGAGTTGAAACTCA--TGTTTTGGCTTGGCATTCAGAACTCTTTCCCCCTCAGCACTGGCTTATCCAGAGCGCTCACAGTGCAG----------
i colAng1.NW_012115722v1    I 314 C 0
s calJac3.chrUn_GL286477        49112 155 -     60449 CAGGCTGGTCTTTCTACAGCAAACGGAACTAGGGCCCTTCCCTACCCACAGCTCTCACAGCTAAAGTTGGAGTTAAGCCTCACATGGTTTGGCTTGGCATTCAGAACTCTTTCCCCCTCAGCACTGTTGCATCCAGAGTACT-------CAGTGCAGGACAG
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10498964 158 -  54856640 CAGGCTGGTCTTT---TAGCAAACTGGTTTAGGGCCCTTCACTACCCACAGTTCTGGGAGCTGGAGGTGGAGTTAAGCCTCACATGTGTTGGCTTGGCATTCAGAGCTCTTTCCCCCG-GGCATTGGCTCATCCAGAGCGCTCACAGTACAGGGTAGGGCAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       806619 147 -   1271737 CAGGCTGGTCTTT---CAGCAAACTGGTTTAGGGCCCTTCACTACCCACAGTTGTGGGAGCTGGAGGTGGAGTTAAGCCTCACATGTGTTGGCTTCGTATTCAGAGCTCTTTCCCCCTGGGCACTGGCTCATGCAGAGCACT-------CAGTG-----CAG
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2615582 162 +   3863790 TAGGTTGGTCTTTCTACAGCAAACTGGACTAGGGCCCTTCCCTACCCACAGCTCTCACAGCTAAAGTTGGAGTTAAGCCTCACATGGTTCTGCTTGGCATTCAGAGCTCTTTCCCCCTCAGCATTGTTTCATCCAGAGCACTCACAGTGCAAGGCAAGGCAG
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=1917492.000000
s hg38.chr15_KI270851v1_alt    114768 388 +    263054 GGCAGGAGCCTCGTGACTCAAATGTGGGTTTGGTGCAGAACTGGGTCTGAGGTGGTGCTTTCCCTATgaagagacagggccgacatgggggaa-ttttctgggttcaaagttagacctagagagtgcaaagtttctctgaggcaccaaatggaggggtccagctagcagctggcccctggtctggagcttcaaggagaggtctcagctCAGAGCCACATTCAATAGCCAGCTTACATGTGGCCTCCTGCAGGGAGCCCCTGGAGCTTCCACAGCCTCCGTTCTGCCCCTCTGCATACCCCAGATCTCCTGCTAAGTGGCGTTTGGGTCTTCATGTCATCTCCCTCCCATGTCTGGGAGTAAAGGTGAGGTGCAGAGACTTGCGCTTGTG
s panTro5.chr15               9371722 388 +  83230942 GGCAGGAGCCTCGTAACTCAAATGTGGGTTTGGTGCAGAACTGGGTCAGAGGTGGTGCTTTCCCTATgaagagacagggccgatatgggggga-ttttctgggttcaaagttagacctacagagtgcaaagtttctctgaggcaccaaatggaggggtccagctagcagctggctcctggtctggagcttcagggagaggtctcagctCAGAGCCACATTCAATAGCCAGCTTACATGCAGCCTCCTCCAGGGAGCCCCTGGAGCTTCCACAGCCTCCGATCTGCCCCTCTGCATACCCCAGATCTCTTGCCAAGTGGCATTTGGGTCTTCATGTCATCTCTCTCCCATGTCTGGGAGTAAAGGTGAGGTGCAGGGACTTGCGCTTGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25857494 385 +  99763055 GGCAGGAGCCCCATGACTCAAATGTGGGTTTGGTGCAGAACTGGGTCAGAGGTGGTGCTTTCCCTATgaagagacagggctgagatggg---a-tattctgggttcagagtcagatctatggagtgcaaggtttctctgagacaccaaatggaggggtccagctagcagctggctcctggtctggagcttcaaggagaggtctcagctCAGAGCCACATTCAATAGCCAGCTTACATGCAGCCTCCTGCAGGGAGCCCCTGGAGCTTCCACAGCCTCCGTTCTGCCCCTCTGCATACCCCAGATCTCTTGCCAAGTGGCATTTGGGTCTTCATGTCATCTCTCTCCCATGTCTGGGAGTAAAGGTGAGGTGCAGGGACTTGCGCTTGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        15990 386 +    551209 GGCAGGAGCCTCGTGACTCAAATGTGGGTTTGGTGCAGAACTGGGTCTGAGGTGGTGCTTTCCCTATgaagagacagggccgacatgggggaa-ttttctgggttcaaagttagacctacagagtgcaaagtttctctgaggcaccaaatggaggggtccagctagcagctggctcctggtctggagcttcagggagaggtctcagctCAGAGCCACATTCAATAGCCAGCTTACATGCAGCCTCCTGCAGGGAGCCCCTGGAGCTTC--CAGCCTCCGATCTGCCCCTCTGCATACCCCAGATCTCTTGCCAAGTGGCGTTTGGGTCTTCATGTCATCTCCCTCCCATGTCTTGGAGTAAAGGTGAGGTGCAGGGACTTGCGCTTGTG
i gorGor5.CYUI01015853v1    C 0 C 0
s cerAty1.NW_012002601v1      1554018 387 +   1584492 GGCAGGAGCCCC-TGACTCAAATGTGGGTGTGGTGCACAACTGGGTCTGAGGTGGTGCTTTGCCtaagaagagacagggctgagatggggggatttttctgggttcagagttagacccacagagtgcaaggtttctctgaggcaccaaatggaggg-tccagctggcagctggctcctggtctggagcttcaaggagaggtgtcagctCAGAGCCACATTCAATAGCcagctgaaatgccgcctcctgcagggagtccctggagcttccacagcctcagatctgcccctctgtgtaccccagagcccttgccaagtggcgtttggttcttcatgtcatctccctcccatgtctgggagtaaaggtgaggtgcagggacttgagcttgtG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36262782 361 -  75399963 GGCAGGAGCCCCATGACTCAAATGTGGGTTTGGTGCAGAACTGGGTCTGAGGTGGTGCTTTCCCT---AAGAGACAGGGCTGAGATGGGGGGA-TTTTCTGGGTTCGGAGTTAGACCTACAGAGTGCGAGGTTTCTCTGAGGCACCAAATGGAGGG-TCCAGCTGGCAGCTGGCTCCTGGTCTGGAGCTTCAAGAAGAGGCCTCAGCTCAGAGTCACATTCAATAGCCAGCTTCAATGC-----------------------AGCTTCCACAACCTCAGACCTGCCCCTCTGCACACCCCAGATCTCTTGCCAAGTGGCGTTTGGGTCTTCATGTCATCTCCCTCCCACGTCTGGGAGTAAAGGTGAGGTGCAGGGACTTGAGCTTGTG
i chlSab2.chr5              C 0 I 311
s manLeu1.NW_012101289v1       123211 386 +    138091 GGCAGGAGCCGC-TGACTCAAATGTGGGTGTGGTGCACAACTGGGTCTGAGGTGGTGCTTTGCCTAAGAAGAGACAGGGCTGAGATGGGGGGA-TGTACTGGGTTCAGAGTTAGACCCACAGAGTGCAAGGTTTCTCTGAGGCACCAAATGGAGGG-TCCAGCTGGCAGCTGGCTCCTGGTCTGGAGCTTCAAGGAGAGGTGTCAGCTCAGAGCCACATTCAATAGCCAGCTGAAATGCAGCCTCCTGCAGGGAGTCCCTGGAGCTTCCACAGCCTCAGATCTGCCCCTCTGCATACCCCAGATCTCTTGCCAAGTGGCGTTTGGTTCTTCATGTCATCTCCCTCCCTTGTCTGGGAGTAAAGGTGAGGTGCAGGGACTTGAGCTTGTG
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1398284 384 +   5228064 GGCAGGAGCCCCATGACTCAAATGAAGGTTTGGTGCAGAACTGGGTCTGAGGTGGTGCTTTCCCT---AAGAGACAGGGCTGAGATGGGGGGA-TTTTCTGGGTTTGGAGTTAGACTTACAGAGTGCAAGGTTTCTCTGAGGCACCAAATAGAGGGCTCCAACTGGCAGCTGGCTCCTGGTCTGGAGCTTCAAGAAGAGGTCTCAGCTCAGAGCCACATTCAATAGCCAGCTTCAATGCAGCTTCCAGCAGGGAGCCCCTGGAGCTTCTACAACCTCAGATCTGCCCCGC-ACATACCACAGATCTCTTGCCAAGTGGCGTTTGGGTCTTCATGTCATCTCCCTCCCACGTCTGGGAGTAAAGGTGAGGTGCAGGGACTTGAGCTTGTG
i colAng1.NW_012115722v1    C 0 C 0
s calJac3.chrUn_GL286477        49267 387 -     60449 GGCAGGAGCCCCCATCCTCAAATGTGGGTTTGGTGCAAAACTGAGTATGAGATGGTGGTTTCCCTAAgaagaaacagggctgaggtgggggga-ttttctgggttcagagtttgaccg-cagagtgcaagcttcctttgagacaccaaatggaagggtccagctggcagctggctcctggtctggagcttcaggaagatatctcagctCAGAGCCACAttcaaggaccagcttaaatgcagcctcctgcagggaacctccagagcttccacagcctcagttatgcccctctgcatactccagatcttttgccaagtggtgtttgggtcttcatgtcatccccctcccacgcctgggagtaaaggtgaggtgcagggacttaagcttgtg
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10499122 387 -  54856640 GGCAGGAGCCCCCATCCTCAAATGTGGGTTTGGTACAGAACTGGGTATGTGACGGTGATTTCCCTAAgaagaaacagggctgagatgggggga-ttttctgggttcagagtgagaccgccagagtgcaagcttcctttgagacaccaaatggaggggtcccgctggcagctggctcctggtctggagctttggggacaggtctcagctCAGAGCCACACtcaagagccagcttaaatgcagcctcctgcagggaacccccagagcttccacggcctcggatctgcccctctgcatactccagatcttttgccaagtggcgtttgggtcttcacgtcatctccctcctgtgcctgggagt-aaggtgaggtgcagggacttaagcttgtg
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       806766 375 -   1271737 GGTAGGAGCCCCGTTACTCAAATGTGGGTTTGGTGCAGAACTGGGTATGAGGTGGTGGTTTCCCTAAGAAGAAAC--GGCTGCGAT---GGGA-TTTTCTGGATTCAGA----GACCTCCAGAGTGCAAAGTTTCTCGGAGACACCAAATAGAGGGGTCCAGCAGGCAGCTTTCTCCTGGTGTGGAGCTTCAGGGCGGGTTCTCAGTTCAGAGCCACAttcaagagccagcttaaatacagcctcctgcagggaacctccagagcttccacagtctcagatctgcccctctgtatactccAGATCTTTTGCCAAGCGGCGTTTGGGTCTTCATGTCATCTCCC----ATATCTGGGAGTAAAGGTGAAGTGCAGGGGCTTGAGCTTGCG
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2615744 388 +   3863790 GGCAGGAGCCTTCTTCCTCAAATGTGGGTTTGGTGCACAACTGGGTAtgagatggtgatttccctaagaagaaacagggctgaggtgggggga-tttccttggttcagagttagacctccagagtgcaagcttcctttgagacaccaagtggaggggtccagctggcagctggctcctggtctggaccttcagggagaggtctcagctcagagccacattcaagagccagcttaaatgcagcctcctgcagggagcccccagagcttccagagcctcagatctgcccctctgcatactccagatcttttgccaagtggtgtttggctcttcatgtcgtctccctcccatgcctgggagtaaaggtgaggtgcagggacttaagcttgtg
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e macFas5.chr7              170144565   0 - 171882078 C

a score=734619.000000
s hg38.chr15_KI270851v1_alt    115156 154 +    263054 TACTCTGGTGTCTTAAGGGAGAGTGTGTCAAGTAGAGTGGAGGCGGCTTGGAAAGAGGGAGACTCAGAGGAGAGTGAAGGACACATGACCAGGCGAGCCTGGGAGCAGGAAAA-----GAGAGTGAGCAGAGGCAACTGCTGGGTCAGGGGAGCGGATG
s panTro5.chr15               9372110 154 +  83230942 TACTCTGGTGTCTTAAGGGAGAGTGTGTCAAGTAGAGTGGAGGCGGCTTGGAAAGAGGGAGACTCAGAGGAGAGTGAAGGACACATGACCAGGCGAGCCTGGGAGCAGGAAAA-----GAGAGTGAGCAGAGGAAACTGCTGGGTCAGGGGAGCCGATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25857879 152 +  99763055 TACTCTGGTGTCTTAAGGGAGAGTGTGTCAAGTAGAGTGGAGGCGGCTTGGAAAGAGGGAGACTCAGAGGAGAGTGAAGGACACGTGACCAGGCGAGCCTGGGAGCAGG--AA-----GAGAGTGAGCAGAGGAAACTGCTGGGTCaggggagcggatg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        16376 154 +    551209 TACTCTGGTGTCTTAAGGGAGAGTGTGTCAAGTAGAGTGGAGGCGGCTTGGAAAGAGGGAGACTCAGAAGAGAGTGAAGGATACATGACCAGGCGAGCCTGGGAGCAGGAAAA-----GAGAGTGAGCAGAGGAAACTGCTGGGTCAGGGGAGCGGATG
i gorGor5.CYUI01015853v1    C 0 C 0
s cerAty1.NW_012002601v1      1554405 157 +   1584492 TACTCTGGTGTCTTAAAGGAGAATGTGTCAAGTAGAGTGGAGGCGGCTTGGAAAGAGGGAGACTCAGAGGAGAGTGAAGGACAC-TGACCAGGCGAGCCTGGGAGCAGGAGAAGAGATGAGCGTGAGCAGAGGAAACCGCTGGGGCAGGGG-GCGGATG
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr5               36263454 159 -  75399963 TACTTTGGTATCTTAAGGGAGAGTGTGTCAAGTAGAGTGGAGGTGGCTTGGAAAGAGGGAGACTCAGAGGATAGTGAAGGACACATGACCAGGCGAGCCTGGGAGCAGGAAAGGTGATGAGAGTGAGCAGAAGAAACTGCTGGGGCAGGAGAGCAGATG
i chlSab2.chr5              I 311 N 0
s manLeu1.NW_012101289v1       123597 159 +    138091 TACTCTGGTGTCTTAAAGGAGAATGTGTCAAGTAGAGTGGAGGCGGCTTGGACAGAGGGAGACTCAGAGGACAGTGAAGGACACATGACCAGGCGAGCCTGGGAGCAGGAAAAGAGATGAGCGTGAGCAGAGGAAACTGCTGgggcaggggagaggatg
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115722v1      1398668 159 +   5228064 TACTTTGGTGTCTTAAGGGAGAGTGTGTCAAGTAGAGTGGAGGTGGCTTGGAAAGAGGGAGACTCAGAGGATAGTGAAGGACACATGACCAGGCGAGCCTGGGAGCAGGAAAGGTGATGAGAGTGAGCAGAGGAAACTGCTGGGGCAGAGGAGCAGATG
i colAng1.NW_012115722v1    C 0 N 0
s calJac3.chrUn_GL286477        49654 159 -     60449 ttctctggtgccttcagggagaatgtgtcaagtacagaggaggtgGCTTGGAAAGAGGGAGACTCACAAGAGAGTCAAGGATATGTGAGCAGGCGAGCCTGGTAGCAGGAAAAGAGATGAGAGTGAGCAGAGGCACGAGATGGGGCAGGGGAGCAGGTG
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10499509 157 -  54856640 ttctctggtgccttc-ggGGGAATCTGTCAAGTAGAGAGGAGTGGGCTTGGAAAGAGGGAGACTCAGAGGAGAGTCGAGGACATGTGAGCAGA-GAGCCTGGGAGCAGAAAAAGAGATGAGCGTGAGCGGGGGCACGTGCTGGGGCAGGGGAACAGGTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       807141 150 -   1271737 TACTCTGGTGCCTTCGGGGAGAA--TGTCACGTAAAGAGGAGGCGGCTTGGAC------AGACTCACAGGAGAGTCAAGGACATGTGAGCAGA-GAGCCTGGGAGCAGGAAAAGAGATGAGAGTGAGCGGAGGCATGTGCCGGGACAGGGGAGCAGGTG
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2616132 159 +   3863790 tactctggtgccttcagGGAGAATGTGTCGAGTAGAGAGGAGGCAGCTTGCAAAGAGGGAGACTCAGAGGAGAGTCAAGGACATGTGAGCAGGTGAGCCTGGGAGAAGGAAAAGAGAAGAGAGTGAGCAGAGGCACATGCTGGGGCAGGGGAGCAGGTG
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e macFas5.chr7              170144565   0 - 171882078 C

a score=2929146.000000
s hg38.chr15_KI270851v1_alt    115310 853 +    263054 GGAGGATCAGGGAATGCGGGGGGGCTGGAGAGGTAGGG-GTGGGGACGTTGGCGAGGGGCTGCCTGGCTCGCCAGGCTCAGGAGTCAGTTACATCCTCCCACAAGGGCCA-GCTCACCTGGTCGCCCCAAAGACCTCCCTCTGTGGGTGGGACCAGAGGGCCAAGAGCACGGATAACCCAATTGAGCAGGACTGAGGCGGACTCAGGTGGGTGCTGGGCCGGACTCCTGGCTGTGGGGAGCAGCCGCCACCCTGCCTATTGCATCCACTTTCCAACTCGCTGCCTATCTGAGCAGATGCGATATTGGGCACCTTGTGAAACATGCTCCTGGTGCACCTGCTGCCTGCTGCCCCTCCTGCAGAGTGCCC-GGGCTCTCCAGA--GGGGATTCCTATGGAGGCTTGGCCTAGATTCTGAGTCCTGCCTCTCATACCTGGGGCTGCTACCCCAGAGGCCAGCTGCTTGAGTACCCCGGAAGCCAGTCTGTAGCCCCAGGCTACAGCTGGGTCCATCCCACAGCCCTTCTCTAATGTACCTATTTGGACTGGCTGCTCATTTcatagagaggggtgtgtcttgccccagaccatctggcatgtctaaggcagctgtggggtcagaatctgcagctcccagccctcagcccagCAATAGTAGGAAAGGCTGGACCC-CACATCTCTGAAGTCCCACTGGGTGGGTGTGAGCGGGCTCCCGAGTACAGGGCTGCTCTGCAGGCTGTGGGGCTCATGCGCCAGCTCTGAGCCCACCTGATGTGCTCACGTTGCTCACCTTTGGGCCTGTCCTGCCTCTCAGGCATTCGGCTGACCC-TGAGGGCCTCTCCCTCATCTTGACCACCAG
s panTro5.chr15               9372264 851 +  83230942 GGAGGATCAGGGAATGC-GGGGGGCTGGAGAGGTGGGG-GTGGGGACATTGGCGAGGGGCTGCCT-GCTCGCCAGGCTCAGGAGTCAGTTACATCCTCCCACAAGGGCCA-GCTCACCTGGTCGCCCCAAAGCCCTCCCTCTGTGGGTGGGACCAGAGGGCCAAGAGCACGGATAACCCAATTGAGCAGGACTGAGGCGGACTCAGGTGGGTGCTGGGCCGGACTCCTGGCTGTGGGGAGCAGCCGCCACCCTGCCTATTGCATCCACTTTCCAACTCGCTGCCTATCTGAGCAGATGCGATATTGGGCACCTTGTGAAACATGCTCCTGGTGCACCTGCTGCCTGCTGCCCCTCCTGCAGAGTGCCC-GGGCTCCCCAGA--GGGGATTCCTATGGAGGCTTGGCCTAGATTCTGAGTCCTGCCTCTCATACCTGGGGCTGCTACCCCAGAGGCCAGCTGCTTGAGTACCCCGGAAGCCAGTCTGTAGCCCCAGGCTACAGCTGGGTGCATCCCACAGCCCTTCTCTAATGTACCTATTTGGACTGACTGCTCATTTCATAGAGAGGGGTGTGTCTTGCCCCAGACCATCTGGCATGTCTAAGGCAGCTGTGGGGTCAGAATCTGCAGCTCCCAGCCCTCAGCCCAGCAATAGTAGGAGAGGCTGGACCC-CACATCTCTGAAGTCCCACTGGGTTGGTGCGAGCGGACTCCCGAGTACAGGGCTGCTCTGCAGGCTGTGGGGCTCATGCGCCAGCTCTGAGCCCACCTGATGTGCTCAAGTTGCTCACCTTTGGGCCTGTCCTGCCTCTCAGGCGTTCGGCTGACCC-GAAGGGCCTCTCCCTCATCTTGACCACCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25858031 852 +  99763055 ggaggatcagggaacga-ggagggctggagaggtgggt-gtggggaTGCTGGCAAGGGGCTGCCTGGCTCGCCAGGCTCAGGAGTTGGTTACATCCTCCCACAATGGCCA-GCTCACCTGGTCGCTCCAAAGCCCTCCCTCTGTGGGTGGGACCAGAGGGCCCAGAGCACGGATGACCCAGTTGAGCAGGACTGAGGTGGACTCAGGTGGGTGCCGGGCTGGACTCCTGGCCGTAGGGAGCAGCTGCCACCCTGCCTACTGCATCCACATTCCAACTCGCTGCCTATCTGAGCAGATGTGATATTGGGCACCTTGTGGAACATGCTCCTGGTGCACCTGCTGCCTGCTGCCCCTCCTGCAGAGTGCCT-GGGCTCTCCAGA--GGGGATTCCTGTGGAGGCTTGGCCTAGATTCTGAGTCCTGCCTCTCATACCTGGGGCTGCTACCCAAGAGGCCAGCTGCTTGAGTACCCTGGAAGCCAGTCTGTAGCCCCAGGCTACAGCTGGGTGCATCCCACAGCCCTTCTCTAGTGTACCTATTTGGACTGACTGCTCATTTCATAGAGAGGGGTGTGTCTTGCCCCAGACCATCTGGCATGTCTAAGGCAGCTGTGGGGTCAGAATCTGCAGCTCCCAGCCCT-AGCCCAGCAATAGTAGGAGAGGCTGGACCC-CACATCTCTGAAGTCCCACTGGGTTGGTGCGAGCGGACTCCCAAGTACAGAGCTGCTGTGCAGGCTGTGGGGCTCATGCACCTGTTCTGAACCCACCCGATGTGCTCAGGTTACTCACCTTTGGGCCTGTCCTGCCTCTCTGGCATTCGGCTGACCCTGAAGGGCCTCTCCCTCATCTTGACCACCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        16530 845 +    551209 GGAGGATCAGGGAATGC-GGGGGGCTGGAGAGGTGGGG-GTGGGGACGTTGGCGAGGGGCTGCCTGGCTCGCCAGGCTCAGGAGTCAGTTACATCCTCCCACAAGGGCCA-GCTCACCTGGTCGCCCCAAAGCCCTCCCTCTGTGGGTGGGACCAGAGGGCCAAGAGCACGGATAACCCAATTGAGCAGGACTGAGGCGGACTCAGGTGGGTGCTGGGCTGGACTCCTGGCTGTGGGGAGCAGCCGCCACCCTGCCTATTGCATCCACTTTCCAACTCGCTGCCTATCTGAGCAGATGCGATATTGGGCACCTTGTGAAACATGCTCCTGGTGCA-------CCTGCTGCCCCTCCTGCAGAGTGCCC-AGGCTCTCCAGA--GGGGATTCCTATGGAGGCTTGGCCTAGATTCTGAGTCCTGCCTCTCATACCTGGGGCTGCTACCCCAGAGGCCAGCTGCTTGAGTACCCCGGAAGCCAGTCTGTAGCCCCAGGCTACAGCTGGGTCCATCCCACAGCCCTTCTCTAATGTACCTATTTGGACTGACTGCTCATTTCATAGAGAGGGGTGTGTCTTGCCCCAGACCACCTGGCATGTCTAAGGCAGCTATGGGGTCAGAATCTGCAGCTCCCAGCCCTCAGCCCAGCAATAGTAGGAGAGGCTGGACCC-CACATCTCTGAAGTCCCACTGGGTTGGTGCGAGCGGGCTCCTGAGTACAGGGCTGCTCTGCAGGCTGTGGGGCTCATGCGCCAGCTCTGAGCCCACCTGATGTGCTCAAGTTGCTCACCTTTGGGCCTGTCCTGCCTCTCAGGCATTTGGCTGACCC-TAAGGGCCTCTCCCTCATCTTGACCACCAG
i gorGor5.CYUI01015853v1    C 0 C 0
s cerAty1.NW_012002601v1      1554562 850 +   1584492 GGAGGATCAGGGAATG--AGGGGGCTGGAGAGGTGGGG-GTGGGGATGCTGGTGCCAGGCTGCCTGGCTCGCCAGGCTCAGGAGTCGGTTACATCCTCCCACAAGGGCCA-GCTCACCTGGTCGCCCCAAAGCCCTCCCTCTGTGGGTGGGACCAGAGGGCCCAGAACATGGATGACCCAACTGAGCAGGACTGAGGTGGACTCAGGTGGGTGCTGGGCTGGACTCCTGGCTGTGGGGAGCAGCCGCCACCCTGCCTACTGCGTCCACTTTCCAACTCGCTGCCTGTCTGAGCAGATGCAATATGGGGCACCTTGTGAAACGTGCTCCTGGTGCACCTGCTGCCTGCTGCCCCTCCTGCAGAGTGCCC-GGGCTCTCCAGA--GGGGATTCCTGTGGAGGCTTGGCCTAGATTCTGAGTCCTGCCTCTCACACCCGGGGCTGCTACCCCAGAGGCCAGCTGCCTGAGTACCCTGGAAGCCTGTCTGTAGCCCCAGGCTACAGCTGGGTCCATCCCACAGCCCTTCTTTAGTGCATCTATTTGGACTGACTGGTCATTTCATAGAGAGGGGTGTGTCTTGCCCCAGCCCATCTGGCATGTCTAAGGCAGTTATGGAGTAAGAATCTGCAGCTCCCAGCCCTCAGCCCTGCAATAGTAGGAGAGGCTGGA-CC-CACATCTCTGAAGTCCCACCGGGCTGGTGCGAGCGGGTTCCTGAGTCCAGGGCTGCTCTGCAGGCTGTGGGGCTCATGCACCAGCTCTGAGCCCACCTGATGTGCTCAGGTTGCTCACCTTTGGGCCTGTCCTGCCTCTCAGGCATTCAGCTGACCC-TGAGGGCCTCTCCCTCATCTTGACCACCAG
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1       123756 850 +    138091 ggaggatcagggaatg--agggggctggagaggtgggg-gtggggatgctggcgaggggCTGCCTGGCTCGCCAGGCTCAGGAGTCAGTTACATCCTCCCACAAGGGCCA-GCTCACCTGGTCACCCCAAAGCCCTCCCTCTGTGGGTGGGACCAGAGGGCCCAGAGCACGGATGACCCAACTGAGCAGGACAGAGGTGGACTCAGGT-GGTGCTGGGCTGGACTCCTGGCCGTGGGGAGCAGCCGACACCCTGCCTACTGCGTCCACTTTCCAACTCGCTGCCCGTCTGAACAGATGCAATATGGGGCACCTTGTGAAACGTGCTCCTGGTGCACCTGCTGCCTGCTGCCCCTCCTGCAGAGTGCCC-GGGATCTCCAGA--GGGGATTCCTGTGAAGCCTTGGCCTAGATTCTGAGGCCTGCCTCTCACACCCGGGGCTGCTACCCCAGAGGCCAGCTGCTTGAGTACCCTGGAAGCCTGTCTGTAGCCCCAGGCTACAGCGGAGTCCATCCCACAGCCCTTCTTTAGTGCATCTATTTGGACAGACTGGTCATTTCATAGAGAGGGGTGTGTCTTGCCCCAGCCCATCTGGCATGTCTAAGGCAGTTATGGAGTAAGAATCTGCAGCTTCCAGCCCCCAGCCCTGCAATAGTAGGAGAGGCTGGACCC-CACATCTCTGAAGTCCCACCGGGCTGGTGCGAGCGGGCTCCCGAGTCCAGGGCTGCTCTGCAGGCTGTGGGGCTCATGCACCAGCTCTGAGCCCACCTGATGTGCTCAGGTTGCTCACCTTTGGGTCTGTCCTGCCTCTCAGGCATTCAGCTGACCC-TGAGGGCCTCTCCCTCATCTTGACCACCAG
i manLeu1.NW_012101289v1    C 0 C 0
s calJac3.chrUn_GL286477        49813 846 -     60449 GGAGAATTGGGGAATC--AGGGGGCTGGAGAGGTGGGGGGTGGGGATGCAGGTGAGGGACTGCCTGGCTGTCCAGGCTCAGGAATCAGCTACATCCTTCCGCAAGGGCCA-GCTCGCCGGTTCGCCCCAAAGCCCTCCCTCTGTGGGTGGGCCCAGAGGGCCCAGAGCAGGGATGACTCAATTGAGCAGGACTGAGGCAGACTCGGGTGGGTTCTGGGCTGGACTCCTGGCCGTGGGGAGCAGCCACCACCCTGCCTACTGCATCCACTTTCCAGCTGTCTGCCTCTCTGAGCAGATGCAATATTGGGTGCCTTGTGAAACACGCTCCTAGTGCACCTGCTGCCTCCTGTGCCT-C--CAAACTGCCCTGAGCTCTCCAGA--AGGGGTTCCTGTGGAGGCTGGGCCTAGATTTTGAGCCCTGCCTCTCATACCTGGGGCCTCTTCCCCAGAGGCCAGCTGCTTGAGTACCCTGGAAGCCAGTCTAT--CCCCAGGGTACAGCTGGATTTGTTCCACAGCCCTTC-ATGGTGTATCTATTTGTACTgactgctcatttcatagagagacgtgtgtcttgccccagctcatctggcatgtctaaagcaGCTGTGGGGTCAGAATTTGCAGCTCCCAGCCCCCAGCCCTGCAACATTAGGGGAGGTTGGACCC-CACATCTCTGAAGTCCCATGGGGCTGGTGCGAGTGGGCTCCTGAATCCAGGGCTGCTCTGCAGGCTGTGGGGCTCACGTTCCAGCTCCAGGC-CACCTGATGTGCTCAGGCTGCTCACCTTTGGGCCTGTTCTGCCTCTCGGGTATTCGGCTGACCC-CGAGGGCCTCTCCCGCATCTTGACCACCAG
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10499666 831 -  54856640 GGAGGATTGGGGAATG--AGGGGGCAGGAGA--------GTGGGGCTGCTGTCAAGGGGCTGCCTGGCTGTCCAGGCTCAGGAGTCGGTCACATCCTCCCGCAAGGGCCA-GCTCACCCGGTTGCCCCAAAGCCTTCTTTCTGTGGCTGTGACCAGAGGGC---------AGATGACCCAATTGAGCAGGCCTGAGGTGGATTCGGGTGGGTGCTGGGCTGGACTCCTGGCCATGGGGAGCAGCCACCACCCTGCCTACTGTACCCACTTTCCGGCTGGCTGCCTCTCTGCGAAGAGGCAATTTTGGGTGCCTGGTCACGCATGCTCCTAGTGCACCTGCTGCCTGCTGTGCCTCC--CCAACTGCCCTGGGCTCTCCAGAGGGGGGGTTCCTGTGGAGGCTGGGCCTCGGTTTTGAGCCCTGCCTCTCACACCTGGGGCCCCT--CACAGAGGCCAGCTGCTTGAGTACCCCGGAAGCCAGTCTAT--CCCCAGGGTACAGCTGGGTCCCTTCCACAGCCCTTC-ATGGTGTATCTATTTGGACTGACTGCTCATTTCATAGAGAGGGGTGGGTCTTGCCCCAGCTCATCTGGCATGTCTAAAGCAACTGTGGGGTCAGAATCTGCAGCTCCCAGCCCCCAGCCCCGCAACACTAGGGGAAGCTGGACCC-CACATCTCTGAGGTCCCACGGGGCTGCTGTGAGCGGGCTCCCGAGTCCAGAGCTGCTCTGCAGGCTGTGGGGCTCACGCTCCAGCTCCAGGCTCACCTGATGTGCTCAGGCTGCTCACCTCTGGGCCTGTCCTGCCTCTCAGGTATTCGGCTGACCC-CGAGGGCCTCTCCCTCATCTTGACCACCAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       807291 838 -   1271737 GGAGGATTGGGGAATG--AGGGGGCTGGAGA--------GTGGGGCTCCTGTCGAGGGGCTGCCTGGCTGTCCAGGCGCAGGAGTGGGTTACATTCTCGCGCAAGGGCCA-GCTTACCTGGTTGCCCCAAAGCCTTCTTTCTGTGGCTGTGACCAGAGGGTCGAGAGCACAGATGACCCAAGTGAGCAGGCCTGAGGCGGACTCCGGTGGGTGCTGGGCTGGATGCCTGGCCGAGGGGAGCAGCCACCACCCTGCCTACTGCACCCACTTTCCAGCTGGCTGCCTCTCTGAGCAGATGCAATATTGGGTGCCTTGTAAAACATGCTCCTAGTGCACCTGCTGCCTGCTGCCCCTCC--CCAACTGCCCTGGGCTCTCCAGA--GGGGGTTCCTGTGGAGGCTAGCCCTAGATTTTGAGCCCTGCCTCTCATACCTGGGGCCCCTCCCCCAGCGGCCAGCTGCTTGAGTATGCTGGAAGCCAGTGTGTAGCCCCAGGCTACGGCTGGGTCCCTCCCACAGCCCTTC-ATAGCTTATCTATTTGGACTGACTGCTCATTTCATAGAGTGC----TGTCTTTTCCCAGCTCATCTGGTATGTCTAAAGCAGCTGTGGGGTCAGAATCTGCAGCTCCAAGCCCCCAGCCCTGCAACATTAGCAAAGCCTGGACCC-CATATCTCTGAAGTCCCACTGGGCTGGTGTCAGCAGGCTCCTGAGTCCAGGGCTGCTCTGCAGGCTGTGGGGCTCATGCTCCAGCTCCGGACCCACCTGATGTGCTCAGGCTGCTCACCTTCGGGCCTGTCCTGCCTCTCAGGTATTCGGCTGACCC-CGAGGGCCTCTCCCTCATCCTGACCACCAg
i cebCap1.NW_016107859v1    C 0 I 247
s aotNan1.NW_018512720v1      2616291 848 +   3863790 GGAGAATTGGGGAATG--AGGGGGCTGGAGAGGTGGGG-GTGGAGATGTGGGAGAGGGGCTGCCTGGCTGTCCAGGCTCAGGAGTCAATTACATCCTCCTGCAAGGGCCAGGCTCACTAGGTTG-CCCAAAGCCCTCCCTCTGTGGGTGGGGCCAGAGGGCCCAGAGCACAGATGACTCAATTGAGCAGGCCTGAGGTGGACTCGAGTGGGTGCTGGGCTGGACTCCTGGCTGTGGGGAGCAGCCGCCACCCTGCCTACTGCATCCACTTTCCAGCTGGCTGCCTCCCTGAGTGGATGCAATATTGGGTGCCTTGTGAAACATCCTCCTAGTGCACCTGCTGCCTGCTGTGCCCCT--GAGACTGCCCTGGGCTCTCCAGA--GGGGGTTGCTATGGAGGCTGGGCCTAGATTTTGAGCCCTGCCTCTCATACTTGGTTCCCCTCCCCCAGAGGCCAGCTGCTTGAGTATCCCGGAAGCCAGTCTAT--CCCCAGGGTATAGCTGGGTTTGTTCCACAGCCCTTC-ATGGTGTATCTATTTGGACTGACTGCTCATTTCACAGAAAGGGGTGTGTCTTGCCCCAGCTCATCTGGCATGTCTAAAGCAACTGTGGGGTCAGAATCTGCAGCTCCCAGCCCCCAGCCCTGCAACATTAGGGGAGGCTGGACCCTCACATCTCTGAAGTCCCACCGGGCTGGTGCAAGTGGGCTCCTGAGTCCAGGGCTGCTCTGCAGGCTGTGGGGTTCACGCTCCAGCTCTGGGCCCACCTGATATGCTCAGGCTGCTCACCTTTGGGCCTGTCCTGCCTCTCAGGTATTCAGCTGACCC-TGAGGGCCTCTCCCTCATCTTGACCATGAG
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e macFas5.chr7              170144565   0 - 171882078 C

a score=1056093.000000
s hg38.chr15_KI270851v1_alt    116163 401 +    263054 CTACGGGCTCTGATTTAGAGGTTCCCAgaaccttagaccatttg--gc-cgg----ccccc-------------------catttctcacctgaggaaactgagaccagagagggatagcaactttctcaaggacccccagcaattcagaggcagaaccaggtctaggagcctcttctCGATAGAGGTTCCCCCTGTCCCCTGAGCCTTCGTTAGTGCCTCATTAACTTCCCTGTAAGGAAACTGCCCCGCTGAGGCTGGAAATGGTGCTGTCCAGAGTGGTGtgtgccagtgactgtgcttgtgtttgtacttg-tgagtgtgTATGGGGGTGGGGATGAGGGGTGGGAATAAACGGCAGGGATGCCGGGGGCTGG-ATGCACTCCACCTCA-CCCCAAAAAGGGGCGCAGGAGAGCCCAGCCAAGCAC
s panTro5.chr15               9373115 401 +  83230942 CTACAGGCTCTGACTTAAAGGTTCCCAgaaccttagaccatttg--gc-cgg----ccccc-------------------catttctcacctgaggaaactgagaccagagagggatagcaactttctcaaggacccccagcaattcagaggcagaaccaggtctaggagcctcttctCGATAGAGGTTCTCCCTGTCCCCTGAGCCTTCTTTGGTGCCTCATTAACTTCCCTGTAAGGAAACTGCCCCGCTGAGGCTGGAAATGGTGCTGTCCAGGGTGGTGTGTGCCGGTGACTGCGCCTCTGTTTGTACTTG-TGAGTGTGTATGGGGGTGGGGATGAGGGGTGGGAATAAACGGCAGGGATTCTGGGGGCTGG-ATGCACTCCACCTCA-CCCCAAAAAGGGGCGCAGGAGAGCCCAGCCAAGCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25858883 401 +  99763055 CTATGGGCTCTGACTTAGAGGTTCCCAgaaccttagaccatttg--gc-cga----ccccc-------------------catttctcagctgaggaaactgaggccagagagggatagcaactttctcaaggacccccagcaattcagaggcagaaccaggtctaggagcctcttctCGATAGAGGTTCTCCCTGTCCCCTGAGCCTTCTTTGGTGCCTCATTAACTTCCCTGTAAGGAAACTGCCCCGCTGAGGCTGGAAATGGTGCTGTCCAGGGTGGTGTGTGCCGGTGACTGCGCCTCTGTTTGTACTTG-TGAGTGTGTATGGGGGTGGGGATGAGGGGTGGGAATAAACGGCAGGGATTCTGGGGGCTGG-ATACACTCTGCCTCA-CCCCAAAAAGGGgcacagcagagcccagccaagcac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        17375 397 +    551209 CTACAGGCTCTGACTTAGAGGTTCCCAgaaccttagaccatttg--gc-cgg----ccccc-------------------catttctcacctgaggaaactgagaccagagagggatagcaactttctcaaggacccccagcaattcagaggcagaaccaggtctaggagcctcttctCGATAGAGGTTCCCCCTGTCCCCTGAGCCTTCTTTAGTGCCTCATTAACTTCCCTGTAAGGAAACTGCCCCGCTGAGGCTGGAAATGGTGCTGTCCAGAGTGGTGTGTGCTGGTGACTGCGCCTCTGTTTGTACTT-----GTGTGTATGGGGGTGGGGATGAGGGGTGGGAATAAACGGCAGGGATTCTGAGGGCTGG-ATGCACTCCACCTCA-CCCCAAAAAGGGGCGCAGGAGAGCCCAGCCAAGCAC
i gorGor5.CYUI01015853v1    C 0 C 0
s cerAty1.NW_012002601v1      1555412 421 +   1584492 CTACGGGCTCTGACTTACAGGTTCCCAGAACCTTAGACCATTTGCCGC-CTG----CCCCCGGCCCCGCCCCGCCTGccacatttctcagctgaggaaactgaaaccaaagaggggaagcaactttctcaaggacccccagcaagtcagaggcagaaccgggtctaggagccgcttctcAACAGAGATTCTCCCTGTCCCCTGAGCCTTTTTTAGTGCCTCATGAACTTCCCTGTAAGGAGACTGCCCCGCCGAGGCTGGAAATGGTGCTGTCCAGGGCGGTGTGTGCGCgtgactgtgcctgtgtttgtacttg-tgagtgtgTATGGGGGTGGGGATGAGGGGAGGGAATAAATGGCAGGGATGCTGGGGCTGGA-ATGCACT-CGCCTCA-CCCCAAAAAGGGGCGCAGGAGAGCCCAGCCAAGCAC
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1       124606 422 +    138091 CTACGGGCTCTGACTTACAGGTTCCCAGAACCTTAGACCATTTGCCGC-CTG----CCCCCGGCCCCGCCCCGCCTGccacatttctcggctgaggaaactgaaaccaaagaggggaagcaactttctcaaggacccccagcaagtcagaggcagaaccgggtctaggaaccTCTTCTCGACAGAGATTCTCCCTGTCCCCTGAGCCTTTTTTAGTGCCTCATCAACTTCCCTGTAAGGACACTGCCCTGCCGAGGCTGGAAATGGTGCTGTCCAGGGCGGTGtgtgcccgtgactgtgcctgtgtttgtacttg-tgagtgtgTATGAGCGTGGGGATGAGGGGTGGGAATAAACGGCAGGGATGGTGGGGCTGGA-ATGCACTCCGCCTCA-CCCCAAAAAGGGGCGCAGGAGAGCCCAGCCAAGCAC
i manLeu1.NW_012101289v1    C 0 C 0
s calJac3.chrUn_GL286477        50659 402 -     60449 CCATGGGCTCTGATTTAG--GTTGCCAgaaccttagaccatttg--gctcaa----ccccc-------------------catttctcagctggggaaactgggacccaagaggggaagcaaatttctcatggacccccagcaagtcagaggcacaaccaggtctaggagccTCTTTCCAACAGAGGTCCTCCCTGACTGCTGAGCCTTCTTTGGTGTCTCATTAACTTCCCTGTAAGGAGACCACCCTGCGGAGGCTGGAAATGGTGCCGTCCAGGGAGGTGTGTGCCCATGACTGTGCCTATGTTTGTACTTGTTGAGTGTGTAGGGGGGCAGGGATGAGGGGTGGGAATAAACAGCA-GCATGCTAGGGGCTGAAATGCACTCCAGCTTTCCCCCAAAAAAAGGCCCAGGGGAGCCCTGCCCAGCAC
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10500497 401 -  54856640 CTGCGGGCTCTGACTTAG--GTTCCCAgaaccttagaccatttg--gctcaa----ccccc-------------------catttctcagttgggcaaactgggacccaagaggggaagcaactttctcacggacccccagcaagtcagaggcagaatcaggtctaggagcctctttccaacagaggtcctccctgacgcctgagccttcgctGGTGTCTCATTAACTTCCCCATAAGGAGATCGCCCTGCGGAGGCTGGAAATGGTGCTATCCGGGGCGGTGTGTGCCCATGACTGTGCCTGTGTTTGTACTTG-TGAGTGTGTAGGGGAGCGGGGATGAGGGGTGGGAATAAACAGCA-GCATGCTAGGAGCTGGAATGCACTCCAGCTTACCCCCCCAAAAAGGCTCGGGGGAGCCCTGCCCAGCAC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018512720v1      2617139 407 +   3863790 CTACGAACTCTAACTTAGAAGTTCCCAGTaccttagatcatttg--gctcaacgtcccccc-------------------catttctcagctggggaaactgggaccaaagaggggaagcaactttctcacagacccctagcaagtgagaggcagaacccggtctaggagcgtctttctgacagaggtcctccctgacccctgagccttctttcATGTCTCATTAACTTCCCCGTAAGGAGACCGCCCTGCAGAGGATGGAAATGgtgctgtccagggccgtgtgtgctcatgactgtgcctgtgtttgtacttg-tgactgtgTAGGGGGGTGGGGATGAGGGGTGGGAATAAACAGCA-GCATGCTAGGGGCTGGAATGCACTCCAGCTCACCCCCCAAAAAAGGTACGGGGGAGCCTTGCCCAGCAC
i aotNan1.NW_018512720v1    C 0 C 0
e cebCap1.NW_016107859v1       808129 247 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e macFas5.chr7              170144565   0 - 171882078 C

a score=514122.000000
s hg38.chr15_KI270851v1_alt    116564 161 +    263054 AGCACATGCTT-CGACTTTCCAATCTGCTGAATGCCTGTGAGGCCGGCTGGGCCCAGAAGACAAGGGACAGGCCTTTCCCC-ATAGATGGCAGGGGGGACCCAGGATGGGTGGAAGCTTCTGCCGCAGCTTTGGGG-GTCACAACCCAGCCCATGGGCTGACAC
s panTro5.chr15               9373516 160 +  83230942 AGCACGTGCTT-CGACTTTCCAATCTGCTGAATGCCTGTGAGGCTGGCTGGGCCCAGAAGACAAGGGACAGGCCTTTCCCC-ATAGATGGCAGGGGGG-CCCAGGATGGGTGGAAGCTTCTGCCGCAGCTTTGGGG-GTCACAACCCAGCCCATGGGCTGACAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25859284 161 +  99763055 agcacGTGCTT-CGACTTTCCAATCTGCTGAATGCCTGTGAGGCTGGCTGGGCCCAGAAGACAAGGGACAGACCTTTCCCC-ATAGATGGCAGGGGGGGCCCAGGATGGGTGGAAGCTTCTGCCGCAGCTTTGGGG-GTCACAACCCAGCCCATGGGCTGACAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        17772 161 +    551209 AGCACATGCTT-CGACTTTCCAATCTGCTGAATGCCTGTGAGGCCGGCTGGGCCCAGAAGACAAGGGACAGGCCTTTCCCC-ATAGATGGCAGGGGGGCCCCAGGATGGGTGGAAGCTTCTGCCGCAGCTTTGGGG-GTCACAACCCAGCCCATGGGCTGACAC
i gorGor5.CYUI01015853v1    C 0 C 0
s cerAty1.NW_012002601v1      1555833 159 +   1584492 AGCACATGCTTCCA--TTTCCAATCTGCGGAATGACTGTGAGGCCGGCTGGGCTCAGAAGACAAGGAACAGGCCTTTCCCC-ACAGATGACAGGGGGG-CCCAGGATGGGCGGAAGCTTCTGCTGCAGCTTTGGGG-GTCACATCCCAGCCCACGGGCTGACAG
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1       125028 158 +    138091 AGCACATGCTT-CA--CCTGGAATCTGCGGAATGACTGGGAGGCCGGCTGGGCTCAGAAGACAAGGAACAGGCCTTTCCCC-ACAGATGACAGGGGGG-CCCAGGATGGGCGGAAGCTTCTGCTGCAGCTTTGGGG-GTCACATCCCAGCCCACGGGCTGACAG
i manLeu1.NW_012101289v1    C 0 C 0
s calJac3.chrUn_GL286477        51061 153 -     60449 AGCACATGCTT-AGGCTTTCCAATCTGCTGAATGCCTGTGAGGCTGGCT-GGCTAAGAAGACAAAGGACAGGCCTTTCCCCAACAGATGGCTAACGTGGTCCAGGATGGGTGGAAGCTTCTGCAGCAGCCTTGGGG-GTCA--------CCCATGGGCTGACAA
i calJac3.chrUn_GL286477    C 0 C 0
s saiBol1.JH378108           10500898 162 -  54856640 AGCACATGCTT-AGGCTTTCCAATCTGCTGAACGCCTGTGTGGCTGGCCGGGCTAAAAAGACAAAGGACAGGCCTTTCCCCCACAGATGGCAAACATGGTCCAGGATGGGTGGAAGCTTCTGCAGCAGCTTTGGGG-GTCATATTCCAGCCCATGGGCTGACAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107859v1       808376 163 -   1271737 AGCACATGCTT-AGAGTTTTTAATCTGCTGAATGCCTGTGAGACTGGCTGGGCTAAGAAGACAAGGTACAGGTCTTTTCCCCACAGATGGCAGGGGTGGCCCAGGACAGGTGGAAGCTTCTGCAGCAGCTTTGGAGTTTCACATCCCAACCCATGAGCTGACTG
i cebCap1.NW_016107859v1    I 247 C 0
s aotNan1.NW_018512720v1      2617546 162 +   3863790 AGCACATGCTC-AGGCTTTCCAATCTGCTGAATGCCTGTGAGGCTGGCTGGGCTAAAAAGACAAAGGACACGCCTTTCTCCCACAGATGGCAAGTGTGGTCCAGGATGGGTGGAAACTTCTGTAGCAGCTTTGGGG-GTCACATTCCAGCCCATGGGCTGACAA
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e macFas5.chr7              170144565   0 - 171882078 C

a score=166870.000000
s hg38.chr15_KI270851v1_alt    116725 55 +    263054 TTAAGCAGAAAAGCCACCTCTAGGGGTCAGTCATAATCTAGTGATTCTGATGAGG
s panTro5.chr15               9373676 55 +  83230942 TTAAGCAGAAAAGCCACCTCTAGGGGTCAGTCATAATCTAGTGATTCTGATGAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25859445 55 +  99763055 TTAAGCAGAAAAGCCACCTCTAGGGGTCAGTCATGATCTAGTGATTCTGATGAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        17933 55 +    551209 TTAAGCAGAAAAGCCACCTCTAGGGGTCAGTCATAATCTAGTGATTCTGATGAGG
i gorGor5.CYUI01015853v1    C 0 C 0
s cerAty1.NW_012002601v1      1555992 55 +   1584492 TTAAGCAGAGAAGCCGCCTCTAGGGGTCAGTCATGATCTAGTGATTCTGATGAGG
i cerAty1.NW_012002601v1    C 0 C 0
s calJac3.chrUn_GL286477        51214 55 -     60449 TTAAGCAGAGAAGCGACATCTAGGGGTCAGTCATGATCCAATGATTCTGATGAGG
i calJac3.chrUn_GL286477    C 0 N 0
s saiBol1.JH378108           10501060 55 -  54856640 TTAAGCAGAGAAGCCACCTCTAGGGGTCAGTCATGATCCAGTGATTCTGATGAGG
i saiBol1.JH378108          C 0 N 0
s cebCap1.NW_016107859v1       808539 55 -   1271737 TAAAGCAGAGAAGCCGCCTCCAGGGGTCAGTCATGATCCAGCAATTCTGATGAGA
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2617708 55 +   3863790 TTAAGCAGAGAAGCCGCCTCTAGGGGTCAGTCATGATCCAGTGATTGTGATGAGG
i aotNan1.NW_018512720v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       125186  0 +    138091 C
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e macFas5.chr7              170144565  0 - 171882078 C

a score=1911.000000
s hg38.chr15_KI270851v1_alt    116780 1 +    263054 A
s panTro5.chr15               9373731 1 +  83230942 A
i panTro5.chr15             C 0 I 2
s panPan2.chr15              25859500 1 +  99763055 A
i panPan2.chr15             C 0 I 2
s gorGor5.CYUI01015853v1        17988 1 +    551209 A
i gorGor5.CYUI01015853v1    C 0 C 0
s cerAty1.NW_012002601v1      1556047 1 +   1584492 A
i cerAty1.NW_012002601v1    C 0 I 2
s cebCap1.NW_016107859v1       808594 1 -   1271737 A
i cebCap1.NW_016107859v1    C 0 C 0
s aotNan1.NW_018512720v1      2617763 1 +   3863790 A
i aotNan1.NW_018512720v1    C 0 N 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       125186 0 +    138091 C
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e macFas5.chr7              170144565 0 - 171882078 C

a score=389543.000000
s hg38.chr15_KI270851v1_alt    116781 326 +    263054 --GGGCCCCACCAACCTCTGTCCAGGGTCTTGTCTGGGAAAAACTGCTCCCTGGCAGAAAGAGGCTAATAATTTGAGAGGAAGCCATAGCTGAAACCCTAAGCTGTGTGAGTGTGTGTCCAGTTTGAGAAAGCATATCCGACTTAAACATTTGTATTGAAAAAATGGAAACATATTCCCCTTGTTTTGGAATACAAACTGCAGAAAGCAGCAGTTAACAGAATCTTATCGGAAAGGTCAGACTCTGCATCTGGAAAGGCACAGTGATTTTCAACTGCGGTGTGTGTCCTTAACTGAGGAAGGGAAGGTAAGATTTATGTTTAGTAAAA
s panTro5.chr15               9373734 325 +  83230942 --GGGCCCCACCAGCCTCTGTCCAGGGTCTTGTCTGGGAAAAACTGCTCCCTGGCAGAAAGAGGCTAATAATTTGAGA-GAAGCCATAGCTGAAACCCTAAGATGTGTGAGTGTGTGTCCAGTTTGAGAAAGCATATCCGACTTAAACATTTGTATTGAAAAAATGGAAACATATTCCCCTTGTTTTGGAATACAAACTGCAGAAAGCAGCAGTTAACAGAATCTTATCGGAAAGGTCAGATTCTGCATCTGGAAAGGCACAGTGATTTTCAACTGCGGTGTGTGTCCTTAACTGAGGAAGGGAAGGTGAGATTTATGTTTAGTAAAA
i panTro5.chr15             I 2 C 0
s panPan2.chr15              25859503 325 +  99763055 --GGGCCCCACCAGCCTCTGTCCAGGGTCTTGTCTGGGAAAAACTGCTCCCTGGCAGAAAGAGGCTAATAATTTGAGA-GAAGCCATAGCTGAAATCCTAAGATGTGTGAGTGTGTGTCCAGTTTGAGAAAGCATATCCGACTTAAACATTTGTATTGAAAAAATGGAAAGATATTCCCCTTGTTTTGGAATACAAACTGCAGAAAGTAGCAGTTAACAGAATCTTATCGGAAAGGTCAGATTCTGCATCTGGAAAGGCACAGTGATTTTCAACTGTGGTGTGTGTCCTTAACTGAGGAAGGGAAGGTGAGATTTATGTTTAGTAAAA
i panPan2.chr15             I 2 C 0
s gorGor5.CYUI01015853v1        17989 326 +    551209 --GGGCCCCACCAGCCTCTGTCCAGGGTCTTGTCTGGGAAAAACTGCTCCCTGGCAGAAAGAGGCTAATAATTTGAGAGGAAGCCATAGCTGAAACCCTAAGCTGTGTGAGTGTGTGTCCAGTTTGAGAAAGCATATCCGACTTAAACATTTGTATTGAAAAAATGGAAACATATTCCCCTTGTTTTGGAATACAAACTGCAGAAAGCAGCAGTTAACAGAATCTTATCGGAAAGGTCAGATTCTGCATCTGGAAAGGCACAGTGATTTTCAACTGCGGTGTGTGTCCTTAACTGAGGAAGGGAAGGTGAGATTTATGTTTAGTAAAA
i gorGor5.CYUI01015853v1    C 0 C 0
s cerAty1.NW_012002601v1      1556050 321 +   1584492 --GGTCCCCACCAGCCTCTGTCCAGGGTCTTGTCT-GGAAAAACTGCTCCCTGGCAGAAACGGGCTGATAATTTGAGAGGAAGCCGTAGCTGAAATTCTAAACTGT----GTGTGTGTCCAGTTTGAAAAAGCATATCCGACTTCAACATTTATATTGAAAAAATGGAAAGCTATTCCCTTTGTTTTGGAATACGAACTACAGAAAGCAACAGTTAACAGAATCTTATTGGAAAGGTCAGATTCTGCATCTGGAAAGGCACAGTGACTTTCAACTGGGGTGTGTGTCCTTCACTGAGGAAGGGAAGGTCAGATTTATGTTTAGTGAAA
i cerAty1.NW_012002601v1    I 2 C 0
s cebCap1.NW_016107859v1       808595 323 -   1271737 GGGGCCCCTACCAGCCTCTGTCCAGAGTCTTGTCTGGGAAAAACTGCTCCCTGGCAAAAAGAGGTGAATAACGTGAGAGGAAGCCATAGCTGAAATTCTAAACTGTGTGAATGTGTGTCCAGTTTTAAAAAGAAAATTTAACCTAAACAGTTGCATTG-AAAAATGGAAAGATACTCC----GTTTTGGAATACAAAATACAGAAAGTAACAGTGAACAGAATCTTATTGGAAAGGTAAGATTCTGCATCTGGAAAGGCAGAGTGGTTTACACCAGGGGTGTGTGTCCTCCACCGAGGAAGGGAAGATGAGATTTATGTTTGTGAAAA
i cebCap1.NW_016107859v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       125186   0 +    138091 C
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e macFas5.chr7              170144565   0 - 171882078 C

a score=1128134.000000
s hg38.chr15_KI270851v1_alt    117107 681 +    263054 GGCAGCTATGAATTTACCTTTTATAAAGAGCTTGCTATATACTATTAGTGC-TTTTCAGTCATGtcagaatcagccagatgcctg--tggaaatgcaaattcccaggcttcattcccagagattctggtcctgtgagcctagggtggggcccagaaatctCTATGGGGTGGTGCAGCCTGCCCCAGGACCACACC-AAGAAACACTGCAACTGG--cccacacacatcccagtccacaaatatgtaggcaggcatcttatctccacagaacagatagggaaactgaggt-cagagtggggaaagaaacgtcatggggccacccagcaagta---gtagcagagccacgatacacccactgcctgcagacaccatctctgatgacagctccacctccccacaGGAATCTTGCCTACCCCCACCCCTACCTCCTGCTGCCCCTATGGTGGGTCTCTGTCCAAGGAAGATGTATCCTAGGTCCTCTAGGCTGACTGCGGCTCAGAGGAAAC-CTTGGCCCAGAGTGTAGGAGCTAGAGGGGTCCTTGGAATTCACGTGGGGAATTTGAGGCCCAAAGAAGGCAGTCCTCACATTTGAACTCTGTCTGGAGAAGGGCTAGGTCTTCTTCCTGAGTGGTAGTTTTGACTTCACCAGCCTGGCCCTCAGTCAAGCTGGCTGTCCAGGCCCGCCACACC
s panTro5.chr15               9374059 687 +  83230942 GGCAGCTATGAATTTACCTTTTATAAAGAGCTTGCCATATACTATTAGTGCTTTTTCAGTCATGtcagaatctgccggatgcctg--tggaaatgcaaattcccaggcttcattcccagagattctggtcctgtgagcctagggtggggcccagcaaactctatggggtggtgcaggctgccccaggaccacacc-aagaaacactgCAACtggcccccacacacatcccagtccccaaatatgtaggcaggcatcttatctccacagaacagatagggaaactgaggt-cagagtggggaaagaaacgtcatggggccacccagcaagtaactgtagcagagccacgatacacccactgcctgcagtcaccatctctgatgacagttccacctccccacaGGAATCTTGCCTACCCCCACCCCTACCTCCTGCTGCCCCTATGGTGGGTCTCTGTCCAAGGAAGATGTATCCTAGGTCCTCTAGGCTGACTGCGGCTCAGAGGAAAC-CTTGGCCCAGAGTGTAGGAGCTAGAGGGGTCCTTGGAATTCATGTGGGGAATTTGAGGCCCAAAGAAGGCAGTCCTCACATTTGAACTCTGTCTGGAGAAGGGCTAGGTCTTCTTCCTGAGTGGTAGGTTTGACTTCACCAGCCTGGCCCTCAGTCAAGCTGGCTGTCCAGGCCCGCCACACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25859828 686 +  99763055 GGCAGCTATGAATTTACCTTTTATAAAGAGCTTGCTATATACTATTAGTGC-TTTTCAGTCATGtcagaatctgccggatgcctg--tggaaatgcaaattcccaggcttcattcccagagattctggtcctgtgagcctagggtggggcccagcaaactctatggggtggtgcaggctgccccaggaccacacc-aagaaacactgCAACtggcccccacacacatcccagtccccaaatatgtaggcaggcatcttatctccacagaacagatagggaaactgaggt-cagagtggggaaagaaacgtcatggggccacccagcaagtaactgtagcagagccacgatacacccactgcctgCAGTCACCATCTCTGATGACAGCTCCACCTCCCCACAGGAATCTTGCCTACCCCCACCCCTACCTCCTGCTGCCCCTATGGTGGGTCTCTGTCCAAGGAAGATGTATCCTAGGTCCTCTAGGCTGACTGCGGCTCAGAGGAAAC-CTTGGCCCAGAGTGTAGGAGCTAGAGGGGTCCTTGGAATTCATGTGGGGAATTTGAGGCCCAAAGAAGGCAGTCCTCACATTTGAACTCTGTCTGGAGAAGGGCTAGGTCTTCTTCCTGAGTGGTAGGTTTGACTTCACCAGCCTGGCCCTCAGTCAAGCTGGCTGTCCAGGCCCGCCACACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        18315 681 +    551209 GGCAGCTATGAATTTACCTTTTATAAAGAGCTTGCTATATACTATTAGTGC-TTTTCAGTCATGtcagaatcagccagatgcctg--tggaaatgcaaattcctaggcttcattcccagagattctggtcctgtaagcctagggtggggcccagaaatctctatggggtggtgcaggctgccccaggaccacacc-aagaaacactgCAACTGG--ctcacacacatcccagtccacaaatatgtaggcaggcatcttatctccacagaacagatagggaaactgaggt-cagagtggggaaagaaatgtcacggggccacccagcaagta---gtagcagagccacaatacacccactgcctgCAGACAGCATCTCTGATGACAGCTCCACCTCCCCACAGGAATCTTGCCTACCCCCACCCCTACCTCCTGCTGCCCCTATGGTGGGTCTCTGTCCAAGGAAGATGTATCCTAGGTCCTCTAGGCTGACTGCGGCTCAGAGGAAAC-CTTGGCCCAGAGTGTAGGAGCTAGAGGGGTCCTTGGAATTCATGTGGGGAATTTGAGGCCCAAAGAAGGCAGTCCTCACATTTGAACTCTGTCTGGAGAAGGGCTAGGTCTTCTTTCTGAGTGGTAGTTTTGACTTCACCAGCCTGGCCCTCAGTCAAGCTGGCTGTCCAGGCCCGCCACACC
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170144565 684 - 171882078 GGCAGTTATGAATTTACCGTTTATGAAGAACTTGCCACATACTATTagtggtttttgaatcatgtcagaatcacccggatgcctg--tgtaaatgtaagttcccaggcttcattctcggagattccggtcctgtgagcctagggtggggcccggaaatctctatggggtggtgcaggctgccccaggaccacacctaagaaacactgCAACT-C--CCCACACACTTCCAAGTCCCCAAATACGTaggcaggtatctcatctccatagaacagatagggaaactgaggtccagagtggggaaagaaatggcacagggtcacccagcaagta---gtagcagagccacgacacacccactgcctgCGGACACCATCTCTGATGACAGCTCCCCCTCCCTACAGGAACCTTGCCCACCCCCACCCCTACCTCCTGCTGCCCCTATGGTGGGTCTCTGTCCAAGGAAGATGTAGCCCTGGTCCTCTAGGCTGACTGGGGCTCAGAGGAAATGCTTGGCCCAGAGTGTAGGAGCTAGAAGGGTTCTTGGAATTCAGGTGAGGAAATTGAGGCCCAAAGAAGGGAGTCCTCAGATTTAAACTCTGTCTGGAGAAGGTCTGGGTCCCCTTCCTGAGTGGTAGGTTTGGCTTCACCAGCCCGGCCCTCAGTCAAGCTGTCTGTCCAGGCCCGCCACACC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1556371 685 +   1584492 GGCAGCTATGAATTTACCTTTTATAAAGAACTTGCCACCTACTATTAGTGCGTTTTCAATCATGtcagaatcaccctgatgcctg--ggtaattgcaagttcccaggcttcattcctggagattctggtcctgtgagcctagggtggggcccggaaatctCTATGGGGTGGTGCAGGCTGCCCCAGGATCACACCTAAGAAACACTGCAACTGC--CCCACACACTTCCAAGTCCCCAAATACGTACACaggcatctcatctccatagaacagatagggaaactgaggtccagagtggggaaagaaatggcacagggtcacccaccaagta---gtagcagagccacgacacacccactgcctgCGGACACCATCTCTGATGACAGCTCCAGCTCCCTTCAGGAACCTTGCCCACCCCCACCCCTACCCCCTGCTGCCCCTATGGTGGGTCTCTGTCCAAGGAAGATGTAGCCCTGGTCCTCTAGGCTGACTGGGGCTCAGAGGAAATGCTTGGCCCAGAGTGTAGGAGCTAGAAGAGTCCTTGGAATTCAGGTGGGAAAATTGAGGCCCAAAGAAGGCAGTCCTCACATTTGAACTGTGTCTGGAGAAGGACTGGGTCTCCTTCCTGAGTGGTAGGTTTGGCTTCACCAGCCTGGCCCTCAGTCAAGCTGGCTGTCCAGGCCCACCACACC
i cerAty1.NW_012002601v1    C 0 C 0
s cebCap1.NW_016107859v1       808918 655 -   1271737 GGCAGTTATGAATTCACCTTTTATAGAGAGCTCACCATATACTATCAGTGCTTCTTCAGTCATGtctgaatcacccagatgcctgtatgtaaatgcagattcccaggcttcattcccagagattctaa-cctgtgagcctagggtgggg-ccagaaatctgtacagggcggtgcaggctgtcccaggaccacacctaagaaacactgCAACTGG--CCGGCACGCATCCAAGTCCCCAGAtatgtaggcgggcatgttatctccatagaac--atggggaaactgaggtccagagtgggcaaagaaatggcacggggtcacccgacaagta---gtaacagagtcgcgatacaccc--------------------------acagctctgccttcctgcaggaaccttgccta-ccccacCCCCAGTTCCTGATG-CCCGATGGTGGGCCTCTGTCCAAGGAAGACGTGGCCCTGGTCCTCTAGGCTGACGGGGGCTCAGAGGAGAAGCTTGGCCCAGAGTGTAGGAGCTAGAAGGGTCCTTGAAATTCAGGTGGGGAAACTGAGGCCCAAAGAAGGCAGTCCTCATGCTTGAACTCTGTCTGGAGAAGAGCTGGGTCTCCTTCCTGAGTGGTAGGTTCAACTCCACTGGCCTGGTCCTCAGTCTAGCTGGCTGCCCAGGCCCTCCACACC
i cebCap1.NW_016107859v1    C 0 I 136
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       125186   0 +    138091 C
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=59983.000000
s hg38.chr15_KI270851v1_alt    117788 44 +    263054 TCGGGGTGGGTGACCAGAGGCGGTGGTGCCATAAAACACGTTTC
s panTro5.chr15               9374746 44 +  83230942 TCGGGGTGGGTGACCAGAGGCGGTGGTGCCATAAAACACGTTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25860514 44 +  99763055 TCGGGGTGGGTGACCAGAGGCGGTGGTGCCATAAAACACGTTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        18996 44 +    551209 TCGGGGTGGGTGACCAGAGGCGGTGGTGCCATAAAACACGTTTC
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170145249 44 - 171882078 TTGGGGTGGGTGACCAGAGGCGGCGGTGCCATAAAACACGTTTC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1557056 44 +   1584492 TCGGGGTGGATGACCAGAGGTGGCGGTGCCATAAAACACATTTC
i cerAty1.NW_012002601v1    C 0 C 0
e cebCap1.NW_016107859v1       809573 136 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       125186  0 +    138091 C
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=102946.000000
s hg38.chr15_KI270851v1_alt    117832 58 +    263054 CTGGGAGATCCACCCCCAAAGCTCAAAACATTCCAGGgctggtgatttgggcaagccc
s panTro5.chr15               9374790 58 +  83230942 CTGGGAGATCCACCCCCAAAGCTCAAAACATTCCAGGgctggtgatttgggcaagccc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25860558 58 +  99763055 CTGGGAGATCCACCCCCAAAGCTCAAAACATTCCAGGgctggtgatttgggcaagccc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        19040 58 +    551209 CTGGGAGATCCACCCCCAAAGCTCAAAACATTCCAGGgctggtgatttgggcaagccc
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170145293 57 - 171882078 CTGGGAGATCCACCCCCAAAGCTC-AAATATTCCAGGGCTGGTGATTTGGGCACGCCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1557100 58 +   1584492 CTGGGAGATCCACCCCCAAAGCTCAAAATATTCCAGCgctggtgatttgggcaagccc
i cerAty1.NW_012002601v1    C 0 C 0
s cebCap1.NW_016107859v1       809709 57 -   1271737 CTGGGAGATCCACCCCCAAAGC-CAGGACATTCCAGGGCTGGGTATTTGGGCAAGCCC
i cebCap1.NW_016107859v1    I 136 I 80
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       125186  0 +    138091 C
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=94332.000000
s hg38.chr15_KI270851v1_alt    117890 78 +    263054 ccttccctctcagcccagtttccccatctCTGCAACAGCCGTGCTGGTGGAGACT----TCTGATACTGAGCTGCAGATTTT
s panTro5.chr15               9374848 78 +  83230942 ccttccctctcagcccagtttccccatctctacaacagctgggctggtggagact----tctgaTACTGAGCTGCAGATTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25860616 78 +  99763055 ccttccctctcagcccagtttccccatctctacaacagCTGTGCTGGTGGAGACT----TCTGATACTGAGCTGCAGATTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        19098 78 +    551209 ccttccctctcagcccagtttccccatctctacaacagCTGTGCTGGTGGAGACT----TCTGACACGGAGCTGCAGATTTT
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170145350 82 - 171882078 CCTTCCCTCTCAGCCCGGTTTCCCCATCTCTACAATAGCTGTGTTGGAGGAGACTTCTCTCTGAGACTGAGCTGCAGATGTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1557158 82 +   1584492 ccttccctctcggccccatttccccatctctacaatagctgtgttggaggagacttgtctctgagACTGAGCTGCAGATGTT
i cerAty1.NW_012002601v1    C 0 C 0
e cebCap1.NW_016107859v1       809766 80 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       125186  0 +    138091 C
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=217875.000000
s hg38.chr15_KI270851v1_alt    117968 129 +    263054 CTCCTGGGTGCCTACACAGCCCAGGTTGCCGGCTCCTCTGTGCCCACTCTTCAAGAAAGTCAGCTCTTAGGTAAGGAAGGTGCCTTGGCCCTATCAGGAGCAGGAGCCGGTGCACCCCCAGCTTCCCAG
s panTro5.chr15               9374926 129 +  83230942 CTCCTGGGTGCCTACACCGCCCAGGTTGCCGGCTCCTCTGTGCCCACTCTTCAAGAAAGTCAGCTCTTAGGTAAGGAAGGTGCCTTGGCCCTATCAGGAGCAGGAGCCAGTGCACCCCCAGCTTCCCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25860694 129 +  99763055 CTCCTGGGTGCCTACACCGCCCAGGTTGCCGGCTCCTCTGTGCCCACTCTTCAAGAAAGTCAGCTCTTAGGTAAGGAAGGTGCCTTGGCCCTATCAGGAGCAGGAGCCAGTGCACCCCCAGCTTCCCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        19176 129 +    551209 CTCCTGGGTGCCTACACCGCCCAGGTTGCCAGCTCCTCTGTGCCCACTCTTCAAGAAAGTCAGCTCTTAGGTAAGGAAGGTGCCTTGGCCCTATCAGGAGCAGGAGCCGGTGCACCCCCAGCTTCCCAG
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170145432 129 - 171882078 CTCCCGGGTGCCTACACCGCCCAGGTTGCCGGCTCCTCTGTGCCCACTCTTCAAGACAGTCACCTCTTAGGTGAGGAAGGAGCCTCAGCCCTATCAGAAATGGAGGCCGGTGCACCCCCAGCCTCCCAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1557240 128 +   1584492 CTCCCGGGTGCCTACACCGCCCAGGTTGCTGGCTCCTCTGTGCCCACTCTTCAAGACAGTCAGCTCTTAGGTAAGGAAGGTGCCTTGGCCCTATCGGGAGTAGTAGCTGGTGC-CCCCGAGCCTCCCAG
i cerAty1.NW_012002601v1    C 0 C 0
s cebCap1.NW_016107859v1       809846 127 -   1271737 CTCCTGGGTGCCTAC-CCTCCCAGGTTGC-GGCTCCTCTGCACCCACTCTTCAAGAACATCATCTCTTAGGTGAGGAAGGAGCCTAAGCCCTGTCAGGAGCGGGAGCCGATGCACCCCCGGCCTCCCAG
i cebCap1.NW_016107859v1    I 80 I 57
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       125186   0 +    138091 C
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=74158.000000
s hg38.chr15_KI270851v1_alt    118097 66 +    263054 GCCAGTGGGGATGACCCAGGCTGCCTACAAAG---------CTGCTGCCCAGCCCGGAGACACCCGCCTGGGAGG
s panTro5.chr15               9375055 66 +  83230942 ACCAGTGGGGATGACCCAGGCTGCCTACAAAG---------CTGCTGCCCAGCCCAGAGACACCCGCCTGGGAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25860823 66 +  99763055 ACCAGTGGGGATGACCCAGGCTGCCTACAAAG---------CTGCTGCCCAGCCCAGAGACACCCGCCTGGGAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        19305 66 +    551209 ACCAGTGGGGATGACCCAGGCTGCCTACAAAG---------CTGCTGCCCAGCCCAGACACACCCGCCTGGGAGG
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170145561 75 - 171882078 ACTGCTAGGGATGACCTGGGCTGCCTGCAAAGCCAGTAGCACTGCTGCCCAGGCCACAGACACCCACCAGGGAAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1557368 65 +   1584492 ACCAGTGGGGATGACCCAGGCTGCCTGCAAGG---------CTGCTGCCCAGCCCACCGACA-CTGCCTGAGAGG
i cerAty1.NW_012002601v1    C 0 C 0
e cebCap1.NW_016107859v1       809973 57 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       125186  0 +    138091 C
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=162520.000000
s hg38.chr15_KI270851v1_alt    118163 104 +    263054 GTGGCCCTGGCCCTTGCAGCGGCTCTGAGAAGAGTCGGCCCCCACTCCAAAACTGGCAGAGCCACCCATGCCTTCCCTCAGCCCAAAGAGGCTTTTAGGAAAAT
s panTro5.chr15               9375121 104 +  83230942 GTGGCCCTGGCCCTTGCAGCGGCTCTGAGAAGAGTCGGCCCCCACTCCAAAACTGGCAGAGCCACCCATGCCTTCCCTCAGCCCAAAGAGGCTTTTAGGAAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25860889 104 +  99763055 GTGGCCCTGGCCCTTGCAGCGGCTCTGAGAAGAGTCGGCCCCCACTCCAAAACTGGCAGAGCCACCCATGCCTTCCCTCAGCCCAAAGAGGCTTTTAGGAAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        19371 104 +    551209 GTGGCCCTGGCCCTTGTAGCGGCTCTGAGAAGAGTCGGCCCCCACTCCAAAACTGGCAGAGCCACCCATGCCTTCCCTCAGCCCAAAGAGGCTTTTAGGAAAAT
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170145636 103 - 171882078 GTGGCCCTGGCCCTTACAGCAGCTCTGAGAAGAGGCAGCCCCCAGTCCAAACCTCGCTGAGTCACCCACACCTTCCCTCAGCTCAAAGAGGCTTTTAGG-ACAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1557433 104 +   1584492 GTGGCCCCGGCCCTCGCAGCAGCTCTGAGAAGAGGCAGCCCTCACTTCAAAACTCGCAGAGCCACCCATGTCTTCCCTAAGCGCAAAGAGGCTTTCAGGAAAAT
i cerAty1.NW_012002601v1    C 0 C 0
s cebCap1.NW_016107859v1       810030  85 -   1271737 GTGGCCCTGGCCCTCACAGCAGCTCTGAGAAGGGGCAGCCCCCACTCCAAA-------------------CCTTCCCTTACCCTAAAGAGGCTTTTAGGAAAAT
i cebCap1.NW_016107859v1    I 57 I 42
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       125186   0 +    138091 C
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=54985.000000
s hg38.chr15_KI270851v1_alt    118267 44 +    263054 GAATCGTCTCAAGTTCAAACCCATGGGGTTGCTGAAAGACAAGA
s panTro5.chr15               9375225 44 +  83230942 GAATCGTCTCAAGTTGAAACCCATGGGGTTGCTGAAAGACAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25860993 44 +  99763055 GAATCGTCTCAAGTTGAAACCCATGGGGTTGCTGAAAGACAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        19475 44 +    551209 GAATCGTCTCAAGTTCAAACCCATGGGGTTGCTGAAAGACAAGA
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170145739 44 - 171882078 GCATCATCTCAAGTTCATACCCATGGGGTTGCTGAAAGAAAGGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1557537 44 +   1584492 GAATCATCTCAAGTTCAAACCCATGGGGTTGCTGAAAGATGAGA
i cerAty1.NW_012002601v1    C 0 C 0
e cebCap1.NW_016107859v1       810115 42 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       125186  0 +    138091 C
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=609942.000000
s hg38.chr15_KI270851v1_alt    118311 362 +    263054 CAGTGCAGGGTGAGCTGGTGCGAGGGAGCGCTGCTCGGTGCAGACTTTGCA---------------GGGAGGGCACTTAGGAAAAAGGACTGGAGTCTGGGAGGGTTAACTAGCTTAGGGTTAAAGGGAGGGGATGGAGCTGGAGTGAGCTGGCCTCGTCCTCCCCCTTGGGCCTTCCAGCCTGGGCTCAGGTGATTCAAGGGAGCAAGCACCTCCCTCTCCCAGCCAGGGAGTTCTCGCCACATTCTGCAATCAGTACCATTCCCCTGGGGGCTGGGTGACAGCCCCCACCTCTGGACCTGGCTGGAACTGCTGTCTCAATTCTAGATCCAAAAGAATCTCTGGCAGCTTCTCCATCTCCCTCTCAGTCCAGCCTC
s panTro5.chr15               9375269 362 +  83230942 CAGTGCAGGGTGAGCTGGTGCGAGGGAGCGCTGCTCGGTGCAGACTTTGCA---------------GGGAGGGCACTTAGGGAAAAGGACTGGAGTCTGAGAGGGTTAACTAGCTTAGGGTTAAAGGGAGGGGATGGAGCTGGAGTGAGCTGGCCTCGTCCTCCCCTTTGGGCCTTCCAGCCTGGGCTCAGGTGATTCAAGGGAGCAAGCACCTCCCTCTCCCAGCCAGGGAGTTCTCGCCACATTCTGCAATCAGTACCATTCCCTTGGGGGCTGGGTGACAGCCCCCACCTCTGGACCTGGCTGGAACTGCTGTCTCAATTCTAGATCCAAAAGAACCTCTGGCAGCTTCTCCATCTCCCTCTCAGTCCAGCCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25861037 362 +  99763055 CAGTGCAGGGTGAGCTGGTGCGAGGGAGCGCTGCTCGGTGCAGACTTTGCA---------------GGGAGGGCACTTAGGGAAAAGGACTGGAGTCTGAGAGGGTTAACTAGCTTAGGGTTAAAGGGAGGGGATGGAGCTGGAGTGAGCTGGCCTCGTCCTCCCCTTTGGGCCTTCCAGCCTGGGCTCAGGTGATTCAAGGGAGCAAGCACCTCCCTCTCCCAGCCAGGGAGTTCTCGCCACATTCTGCAATCAGTACCATTCCCTTGGGGGCTGGGTGACAGCCCCCACCTCTGGACCTGGCTGGAACTGCTGTCTCAATTCTAGATCCAAAAGAACCTCTGGCAGCTTCTCCATCTCCCTCTCAGTCCAGCCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        19519 362 +    551209 CAGTGCAGGGTGAGCTGGTGCAAAGGAGCGCTGCTCGGTGCAGACTTTGCA---------------GGGAGGGCACTTAGGAAAAAGGACTGGAGTCTGGGAGGGTTAACTAGCTTAGGGTTAAAGGGAGGGGATGGAGCTGGAGTGAGCTGGCCTCGTCCTCCCCCTTGGGCCTTCCAGCCTGGGCTCAGGTGATTCAAGGGAGCAAGCACCTCCCTCTCCCAGCCAGGGAGTTCTTGCCACATTCTGCAATCAGTACCATTCCCTTGGGGGCTGGGTGACAGCCCCCACCTCTGGACCTGGCTGGAACTGCTGTCTCAATTCTAGATCCAAAAGAACCTCTGGCAGCTTCTCCATCTCCCTCTCAGTCCAACCTC
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170145783 359 - 171882078 CAGTGTGGTATGAGCTGGCGCAAGGGAGGGCTGCTCTCTGCAGACTTTGCA---------------GGGAGGGCACTTAGGAAAAAGGAC--AAATCTGGGAGGG-TGACTAGCTCAGGGTTAAAGGGAGCGGATAGGGCTAGAGTGGGCTGGCCTCGTTGTCCTCCTTGGGCCTCCCAGCCTGGGCTCAGATGATTCAAGGGAGCAAGCACCTCCCTCTCCCAGCCAGGGAGTTCTCGCCATGTTTTGGAATCAGTACCATTCCCTTGTGGGCTGGGGGACAGCCCCCACCTCCAGACCTGGCTGGAACTGCTGCCTCAATTCTGGATCCAAAAGGGCCCCTGGCAGCTTTTCCGTCTCCCTCCCAGTCCAGGCCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1557581 376 +   1584492 CAGTATGGGGTGAGCTGGTGCGAGGGAGCGCGGCTCTGTGCAGACTCTGCAGGGAGGGCGCTTAGGGGGAGGGCGCTTAGGAAAAGGGACTGGAGTCTGGGAGGC-TGACCAGCTCAGGGTTAAAGGGAAGGGATGGAGCTGGAGTGAGCTGGCCTCATCCTCCTCCTTGGGCCTTCCAGCCTGGGCTCAGCTGATTCAAGGCAGCAAACACCTCCTTTTCCCGACCAGGGAGTTCTCGCCACGTTTTGGAATCGGTACCATTCCCTTGGGGGCTGGGGGGAAGCTCCCACCTCCAGACCTGGCTGGAACTGCTGCCTCAATTCTGGATCCAAAAGAACCTCTGGCAGCTTCTCCATCTCCCTCCCAGTCCAGCCTC
i cerAty1.NW_012002601v1    C 0 C 0
s cebCap1.NW_016107859v1       810157 356 -   1271737 CAGTGCGGGGTGAGCTGGCACGAGGGGGCGCTGCTCTCTGCAGACTTTGCA---------------GGGAGGGCACTTAGGAAAGGGGAGTGGAGTCTGGGAGGG-TGACTAGCTCAGGGCTAAAAGGAGGGGATGGGGCTGGAGTGGGCTGGTCTCATCCTCCCACTTGGGCCTTCCAGCCTGGGCTCAGGTGATTCAAGGGAGCAAGCACATCCCTCTCCCAGGCA-GGAGTTCTCACCACATTTTGGAATCAGT-TCATTCCTTGGGGG--TGGGGGTCAGCCCCCACCTCTGGACCTGGCT-GAACTGCTGCCTCAATTCTGGATCCAAAAGGGCCTCTGGCAGCTTCTCCATCTCCCTCTCAGTCCAGCCCC
i cebCap1.NW_016107859v1    I 42 I 27
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       125186   0 +    138091 C
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=22535.000000
s hg38.chr15_KI270851v1_alt    118673 30 +    263054 ACCTCTTCGCCCGTGGAGGAGCTCCAACAG
s panTro5.chr15               9375631 30 +  83230942 ACCTCTTCGCCCGTGGAGGAGCTCCAACAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25861399 30 +  99763055 ACCTCTTCGCCCGTGGAGGAGCTCCAACAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        19881 30 +    551209 ACCTCTTCGCCCGTGGAGTAGCTCCAACAG
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170146142 27 - 171882078 CCCTCTTC-CCAGTGAGG--GCCCCAACAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1557957 20 +   1584492 ACCTCCTC-CCC---------CCCCAATAG
i cerAty1.NW_012002601v1    C 0 C 0
e cebCap1.NW_016107859v1       810513 27 -   1271737 I
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       125186  0 +    138091 C
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=949284.000000
s hg38.chr15_KI270851v1_alt    118703 574 +    263054 CAAATCTGGCAACTGGAGGAACAAGGCAGGAAGGGCAGGGTCTGAGGAAGGAACCACCTTCAAAAGGCAGCTCTGCCACCTTCTCTCCAGGACTCTCAGGCTTGCTTT-CCTATTGCTCCCTCGACATCCTTTTGCTATAATCTGCCATGT----TGACGTATAGTCTTTAAAAG-CAACAATGCTGTTGACGTGGAGCAGACTTCCCATTTGGGATGGTTTGGAGAAGTTAGGtttgagggcatcctctcttctgcaaactgcagcagtaatagatgagatatacaaagtaaataaaggctgggtgcggtgg-tcgtgcctgtaatcccagcactctgggaggctgaggcaggaggatcacttgaagccaggagttcgagaccagcctggccaatatggcgacaccctgtctctactaaaaatgtaaaaa-ttagctgggcatagtggtgcacacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcagaggctgcagtgaaatgagatcccgccactgcattccagcctgggcgac-agagtgagactccatctc-a
s panTro5.chr15               9375661 574 +  83230942 CAAATCTGGCAACTGGAGGAACAAGGCAGGAAGGGCAGAGTCTGAGGAAGGAACCACCTTCAAAAGGCAGCTCTGCCACCTTCTCTCCAGGACTCTCAGGCTTGCTTT-CCTATTGCTCCCTCGACATCCTTTTGCTATAATCTGGCATGT----TGACGTATAGTCTGTAAAAG-CAACAACGCTGTTGACGTGGAGCAGACTTCCCATTTGGGATGGTTTGGAGAAGTTAGGtttgagggcatcctctcttctgcaaactgcagcagtaatagatgagatatacaaagtaaataaaggctgggtgcggtgg-tcatgcctgtaatcccagcactctgggaggctgaggcaggaggatcacttgaagccaggagttcgagaccagcctggccaatatggcgacaccctgtctctactaaaaatgtaaaaa-ttagctgggcatagtggtgcacacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcagaggctgcagtgaaacgagatcccgccactgcattccagcctgggcgac-agagtgagactccatctc-a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25861429 575 +  99763055 CAAATCTGGCAACTGGAGGAACAAGGCAGGAAGGGCAGGGTCTGAGGAAGGAACCACCTTCAAAAGGCAGCTCTGCCACCTTCTCTCCAGGACTCTCAGGCTTGCTTT-CCTATTGCTCCCTCGACATCCTTTTGCTATAATCTGGCATGT----TGACGTATAGTCTGTAAAAG-CAACAACGCTGTTGACGTGGAGCAGACTTCCCATTTGGGATGGTTTGGAGAAGTTAGGtttgagggcatcctctcttctgcaaactgcagcagtaatagatgagatatacaaagtaaataaaggctgggtgcggtgg-tcatgcctgtaatcccagcactctgggaggctgaggcaggaggatcacttgaagccaggagttcgagaccagcctggccaatatggcgacaccctgtctctactaaaaatgtaaaaa-ttagctgggcatagtggtgcacacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcagaggctgcagtgaaacgagatcccgccactgcattccagcctgggcgac-agagtgagactccatctcaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        19911 576 +    551209 CAAATCTGGCAACTGGAGGAACAAGGCAGGAAGGGCAGGGTCTAAGGAAGGAACCACCTTCAAAAGGCAGCTCTGCCACCTTCTCTCCAGGACTCTCAGGCTTGCTTTACCTATTGCTCCCTCGACATCCTTTTGCTATAATCTGGCATGT----TGACGTATAGTCTTTAAAAGCCAACAACGCTGTTGACGTGGAGCAGACTTCCCATTTGGGATGGTTTGGAGAAGTTAGGtttgagggcatcctctcttctgcaaactgcagcagtaatagatgagatatgcaaagtaaataaaggctgggtgcggtgg-tcatgcctgtaatcccagcactctgggaggctgaggcaggaggatcacttgaagccaggagttcgagaccagcctggccaatatggcgacaccctgtctctactaaaaatgtaaaaa-ttagctgggcatagtggtgcacacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggcagaggctgcagtgaaacgagatcccgccactgcattccagcctgggtgac-agagtgagactccatctc-a
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170146169 579 - 171882078 CAAATCTGACAACTGGAGGAACAAGGCAGGAAGGGCAGGGTCTGAGGGAGTGACCACCTTCAAAGGGCCGCTCGGCCACCTTCTCTCCAGGACTCTCAGGCTTGCTTT-CATATCGCTCCCTCGACATCCTTTTGCTATAATCTGGCTTGTAGACAGACAGATGGTCTTTAAAAA-CAACAACACTGTTGACGTGGAGCAGACTTCCCCTTTGGGATGGTTTGGAGAAGTTAGGGTTGAGGgcatcctctcttcggcaaactgcggcagtgataggtgagatatagaaagtaaataaaggctgggcgtggtgactcacgcctgtaatcccagcactttgagaggccaaggtaggcagatcacctgaggtcaggcattcaagaccagcctggccaacatggtgaaaatccgtctttactaaaaatacaaaaa-ttagccaggcatagtggcgcacgcctgtagttccagctactcaggaggctgaggcaggggaatcatttgaacccgggaggctgagattgcagtgaatggagatctcaccactgcattccagccagggtgat-agagtgagattccatctc-a
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1557977 571 +   1584492 TAAATCTGACTACTAGAGGAACAAGGCAGGAAGGGCAGGGTGTGAGGGAGTGACCACC-TCGGAAGGCAGCTCGGCCACCTTCTCTCCAGGACCCTCAGGCTTGCTTT-CATATCGCTCCCTCGACATCCTTTTGCTATCATCTGGCATCTAGACAGACAGATGGTCTTTAAAAA-CAACAACACTGTTGACGTGGAGCAGACGTCCCCTTTGGGATGGTTTGGAGAGGTTAGGGTTGAGGgcatcctctcttcggcagactgcggcagtagtaggggagatatataaagtatataaaggccaggcgtggtgg-tcacgcctgtaatcccagtactttgggaagccagggaaggaggatcacttgaggccagg------agaacagcctggccaatattgcaacatcccgtctctactaaaaatgtaaaaa-ttagctgggcatagtggtgcacacctgtagtcccagctactcaggaggctgaggcaggagaatcactcgcacccggcagctggaggttgcagtgaaccgagatcccgccaccgcattccagcctgggtgac-agagtgagactccatctc-a
i cerAty1.NW_012002601v1    C 0 C 0
s cebCap1.NW_016107859v1       810540 577 -   1271737 CAAGTCTGACACCTGGAGGAACCAGGCAGGAAGGGCAGGGCCTGAGGGAGTGACCACCTTCAAAAGGCAGCTCTGCCACCTTCTCTCCAGGACTCTCAGTCTTGCTTT-CCTATTGCTCCCTCCACATCCCTTTGCTCGAATCTGACATGT----TGACATGTGGTCTTTAAAAA-TAACAACAGTGATGACATGGGGTAGACTTCCCTTTTGGGACAGTTTAAAGAAGTTAGGTTTGAGGGCATCCTCTCCTGTGCAAACTGCAGCAGTAATAGGTGAGATATATAAAGTAAATAAAgactgggcgtgatggctcatgcatgtaatcccagcactttgggaggctgagacagacgcatcacctgaggccaggagtttgagaccagcctggccaacatggcaaaaccctgtctctactaaaaatacaaaaatttagccaggtttggtggcacatgcctgcagtcccagctactcaggaggctgaggcaggagaatcacttgaaccccgaaggctgaggttgcagtgaactgagattgtgccactgcactccagcctgggtgacaagagcaagactccatctc-a
i cebCap1.NW_016107859v1    I 27 N 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       125186   0 +    138091 C
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=359000.000000
s hg38.chr15_KI270851v1_alt    119277 292 +    263054 aaaaataaaaataaaaaataaagtaaataaaaaagacatgcccaggctgaaaaataagttaa---ttatctccatgaacgaaaagcagacaagaaatgcaaagtggttggaggctgaagagcctggaccctcctgggctttgggAACCAAAGATGGTGGCAAGTCCTTTGGGATAAAGAGGGACAAAATGACTCCTAGCTAGAAGCTGGGAGCTTGGGTGTACCCCAGTACTTGAAAGGATGCTAgctgggcgcggtggctaatgcctgtaataccagcactttgggaggccgag
s panTro5.chr15               9376235 292 +  83230942 aaaaataaaaataaaaaataaagtaaataaaaaagacatgcccaggctgaaaaataagttaa---ttatctccatgaacgaaaagcagaaaagaaatgcaaagtggttggaggctgaagagcctggaccctgctgggctttgggaaccaaagatggtggcaagtcctttgggataaagagggaccaaatgactcctagctagaagctgggagcttgggtgtaccccagtacttgaaAGGATGCTggctgggcgtggtggctaatgcctataataccagcactttgggaggccgag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25862004 292 +  99763055 aaaaataaaaataaaaaataaagtaaataaaaaagacatgcccaggctgaaaaataagttaa---ttatctccatgaacgaaaagcagaaaagaaatgcaaagtggttggaggctgaagagcctggaccctgctgggctttgggaaccaaagatggtggcaagtcctttgggataaagagggaccaaatgactcctagctagaagctgggagcttgggtgtaccccagtacttgaaAGGATGCTggctgggcgtggtggctaatgcctataataccagcactttgggaggccgag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        20487 291 +    551209 aaaaataaaaataaaaaataaagtaaataaaaaagacatgcccaggctgaaaaataagttaa---ttatctccatgaacgaaaagaagaaaagaaatgcaaagtggttggaggctgaagagcctggaccctgctgggctttgggaaccaaagatggtggcaagtcctttgggataaaga-ggaccaaatgactcctagctagaagctgggagcttgggtgtaccccagtacttgaaAGGATGCTggctgggcgcggtggctaatgcctgtaataccagcactttgggaggccgag
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170146748 290 - 171882078 ataaataaaaatttaaaattacctaaataaaaaaaa-atacccagtctgaaaaataagttaatctttatctccatgaatgaaaagcagaaaag-aatacaaagtggttggaggctgaagagcctggaccctgctgggctttggAAACCAAA-ACAGTGACAGGTCCTTTGGGATAAAG--GAATCAAATGACTCCTAGCTGGAAGCTGGGGGGTTGGGGGGACCCCAGTACTTGAAAGGATGCTggtcgggcgcggtggctcatgcctgtaatcccagcactttgggaggctgag
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002601v1      1558548 293 +   1584492 aaaaacaaaaataaaaaataaagtaaataaaaaagacatgcccaggctgaaaaataagttactcattatctccatgaatgaaaagcagaaaagaaatgcaaagtggttgaagactgaagagcctggaccctgctgggctttggaaaccaaagatggtggcaggtcctttgggataaag--ggaccaaatgactcctagctggaagctgggagcttgggtggaccccagtacttgaaAGGCTGCTggccgggcgcggcggctcatgcctgtaatcccagcactttgggaggctgag
i cerAty1.NW_012002601v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       125186   0 +    138091 C
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=1500.000000
s hg38.chr15_KI270851v1_alt    119569 1 +    263054 g
s panTro5.chr15               9376527 1 +  83230942 g
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25862296 1 +  99763055 g
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        20778 1 +    551209 g
i gorGor5.CYUI01015853v1    C 0 C 0
s macFas5.chr7              170147038 1 - 171882078 g
i macFas5.chr7              C 0 N 0
s calJac3.chr6                3906864 1 + 158406734 G
i calJac3.chr6              N 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       125186 0 +    138091 C
e cerAty1.NW_012002601v1      1558841 0 +   1584492 C
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=2100.000000
s hg38.chr15_KI270851v1_alt    119570 1 +    263054 G
s panTro5.chr15               9376528 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25862297 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        20779 1 +    551209 G
i gorGor5.CYUI01015853v1    C 0 C 0
s cerAty1.NW_012002601v1      1558841 1 +   1584492 g
i cerAty1.NW_012002601v1    C 0 C 0
s calJac3.chr6                3906865 1 + 158406734 G
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292            2351000 1 +   2682657 G
i saiBol1.JH378292          N 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1       125186 0 +    138091 C
e macNem1.NW_012011934v1       367141 9491 +   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=8266.000000
s hg38.chr15_KI270851v1_alt       119571 4 +    263054 AAAG
s panTro5.chr15                  9376529 4 +  83230942 AAAG
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25862298 4 +  99763055 AAAG
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           20780 4 +    551209 AAAG
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     10013 4 +     18337 aaag
i macFas5.chr7_KE145676_random N 0 C 0
s cerAty1.NW_012002601v1         1558842 4 +   1584492 aaag
i cerAty1.NW_012002601v1       C 0 C 0
s calJac3.chr6                   3906866 4 + 158406734 AAGG
i calJac3.chr6                 C 0 C 0
s saiBol1.JH378292               2351001 4 +   2682657 AACG
i saiBol1.JH378292             C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186 0 +    138091 C
e macNem1.NW_012011934v1          367141 9491 +   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=-4904.000000
s hg38.chr15_KI270851v1_alt       119575 1 +    263054 -T
s panTro5.chr15                  9376533 1 +  83230942 -T
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25862302 1 +  99763055 -T
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           20784 1 +    551209 -T
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     10017 1 +     18337 -t
i macFas5.chr7_KE145676_random C 0 C 0
s macNem1.NW_012011934v1         1900928 1 -   2379783 -T
i macNem1.NW_012011934v1       n 9491 C 0
s cerAty1.NW_012002601v1         1558846 1 +   1584492 -t
i cerAty1.NW_012002601v1       C 0 C 0
s chlSab2.chr26                  4262920 1 -  58131712 -T
i chlSab2.chr26                N 0 C 0
s colAng1.NW_012115278v1         3990191 1 +   4457520 -T
i colAng1.NW_012115278v1       N 0 C 0
s calJac3.chr6                   3906870 1 + 158406734 G-
i calJac3.chr6                 C 0 C 0
s saiBol1.JH378292               2351005 1 +   2682657 G-
i saiBol1.JH378292             C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186 0 +    138091 C
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=911522.000000
s hg38.chr15_KI270851v1_alt       119576 164 +    263054 AACTCTTATGTCAGTGTG-AAGCAAATCAGACAGGACAGGGGAACATGGAGGGGAGGAGAGCCAAACCAGGGCCTGGTTCCAGACCCAC-----CACACCCGCCCCGTTGAGCCAGGAGCACAGGTGGCTCTCTGCACAACATCAAGAGC----GAGGACATGCTTTCAGCTCC
s panTro5.chr15                  9376534 164 +  83230942 AACTCTTATGTCAGTGTG-AAGCAAATCAGACAGGACAGGGGAACATGGAGGGGAGGAGAGCCCAACCAGGGCCTGGTTCCAGACCCAC-----CGCACCTGCCCCGTTGAGCCAGGAGCACAGGTGGCTCTCTGCACAACACCAAGAGC----AAGGACATGCTTTCAGCTCC
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25862303 164 +  99763055 AACTCTTATGTCAGTGTG-AAGCAAATCAGACAGGACAGGGGAACATGGAGGGGAGGAGAGCCCAACCAGGGCCTGGTTCCAGACCCAC-----CGCACCTGCCCCGTTGAGCCAGGAGCACAGGTGGCTCTCTGCACAACACCAAGAGC----AAGGACATGCTTTCAGCTCC
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           20785 164 +    551209 AACTCTTATGTCAGTGTG-AAGCAAATCAGACAGGACAGGGGAACATGGAGGGGAGGAGAGCCAAACCAGGGCCTGGTTCCAGACCCAC-----CGCACCCGCCCCATTGAGCCAGGAGCACAGGTGGCTCTCTGCACAACATCAAGAGC----GAGGACATGCTTTCACCTCC
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     10018 158 +     18337 aactc--atgTCAGTGTGAAAGCAAATCAGACAGGACAGGGCAACATGGAGGGGAGGAGAGCCAAACCGGGGCCTGGTTCCAGACCC--------------GCCCCTTTGAGCCAGGCGCACAAGTGGCTCTCTGCACAACATCAAGGGTGAAGGAAGACATGCTTTCAGCTCC
i macFas5.chr7_KE145676_random C 0 C 0
s macNem1.NW_012011934v1         1900929 165 -   2379783 AACTCTTATATCAGTGTGAAAGCAAATCTGACAGGACAGGGGAACATGGAGGAGAGAAGAGCCAAACCAGGGCCTAGTTCCAGACCCAC-----TCCACCTGTCCCGTTGAGCCAGGAGCACAAGTGGCTGTCTGCACAACACCAAGAGC----GAGGACATGCTTTCAGCTCC
i macNem1.NW_012011934v1       C 0 C 0
s cerAty1.NW_012002601v1         1558847 167 +   1584492 aactc--atgtcagtgtgaaagcaaatcagacaggacagggcaacatggAGGGGAGGAGAGCCGAACCAGAGCCTGGTTCCAGACCCAT-----GCCACCTGCCCCGTTGAGCCAGGCGCACAACTGGCTCTCTGAACAACATCAAGGGTGAAGGAAGACATGCTTTCAGCTCC
i cerAty1.NW_012002601v1       C 0 M 1830
s chlSab2.chr26                  4262921 165 -  58131712 AACTCTTACATCAGTGTGAAAGCAAATCTGACAGGACAGGGGAACATGGAGGGGAGAAGAGCCAAACCAGGGCCTGGTTCCAGACCCAC-----TCCACCTGTCCCGTTGACCCAGGAGCACAAGTGGCTCCCTGCACAACACCAAGAGT----GAGGACATGCTTTCAGCTCC
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3990192 165 +   4457520 AACTCTTATATCAGTGTGAAAGCAAATCTGACAGAACAGGGGAACATGGAGGGGAGAAGAGCCAAACCAGGGCCTGGTTCCGAACCCAC-----TCCACCTGTCCCGTTGAGCCAGGAGCACAAGTGGCTCTCTGCACAACACCAAGAGC----GAGGACATGCTTTCAGCTCC
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3906871 169 + 158406734 AACTCTTACGTCAGTGTGAAAGCAGATCACACAGGACAGGGGAACCTGGAGGAGAGGAGAGCCAAAGCAGGGCCTGGCTCCAGATCCACGCCACCCCATCCGCCCCGTCAAGCCGGGAGCACAAGTGGCTCTCTGCACAACACCAAGGAC-----AGGACATGCTTTCAGTTCC
i calJac3.chr6                 C 0 C 0
s saiBol1.JH378292               2351006 169 +   2682657 AACGCTTACGTCAGCGTGAAAGCAGATCACACAGGACAGGGGAGCCTGGAGGGGAGGAGAGCCAAAGCAGAGCCTGGCTCCAGATCCGCCCCACCCCACCCGCCCCGTCGAGCCCGGGGCACAAGTGGCTCTCTGCACAACAGCAAGGAC-----AGGACATGCTTTCAGCTCC
i saiBol1.JH378292             C 0 C 0
s cebCap1.NW_016107707v1         1729408 166 +   2086007 AACTCTTATGTCAGTGTGAAAGC--ATCACACAGGACAGGGGAACCTGGAGGAGTGCAGAGCCAAAGCAGGGCGTGGCTCCAGATCCAC-CCACCCCACCCACCCTGTTGAGCTGGGAGCACAAGCGGCTCTCTGCACAACACCAAGGAC-----AGGACATGCATTCAGCTCC
i cebCap1.NW_016107707v1       N 0 C 0
s aotNan1.NW_018503298v1         3411435 158 -   3831555 AACTCTTATGTCAGTGTGAAAGCAGATCACACAGGACACGGGAACCTGGAGGGGAGGAGAGCCAAAGCAGGGCCTGGCTCCAGATCCACCCCACCCCACCTGCCCCGTTGAGCCGGGAGCACAGGTAGCTCTCTGCACAACACCAAGGAC-----AGGACATG-----------
i aotNan1.NW_018503298v1       N 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186   0 +    138091 C
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=1134305.000000
s hg38.chr15_KI270851v1_alt       119740 243 +    263054 ACTTTAACTCAGGTTCCTAATGTGACAGCAGGCTTGTCAATCCCACTTGCCCCCGTGTCTCACACCAGAAAACTACCAGCAGTGTGAGTAAGGACAGAAGCAGGAGACAGAGGAGCCAGGGTTGGGGAATCCCATAGCAACCCACAGGCCCTCAT----CACACACGGCAAGGATGCGCCTTCACTGGGCTCACCACCACCACTCGACATCACCT-------TCACTACATGATACCCTGCCTGGATAACACCA
s panTro5.chr15                  9376698 239 +  83230942 ACTTTAACTCAGGTTCCTAATGTGACAGCAGGCTTGTCAATCCCACTTGCCCCCGTGGCTCACACCAGAAAACTACCAGCAGCGTGAGTAAGGACAGAAGCAGGAGACAGAGGA-CCAGGGAAGGGGAATCCCACAGCAACCCACAGGCCCTCAT----CACACATGGCAAGGATGCGCCCTCACTGGGCTCACCACCACCA---GACATCACCT-------TCACTACCTGATACCCTGCCTGGATAACACCA
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25862467 240 +  99763055 ACTTTAACTCAGGTTCCTAATGTGACAGCAGGCTTGTCAATCCCACTTGCCCCCGTGGCTCACACCAGAAAACTACCAGCAGCGTGAGTAAGGACAGAAGCAGGAGACAGAGGAGCCAGGGTTGGGGAATCCCACAGCAACCCACAGGCCCTCAT----CACACATGGCAAGGATGCGCCCTCACTGGGCTCACCACCACCA---GACATCACCT-------TCACTACCTGATACCCTGCCTGGATAACACCA
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           20949 243 +    551209 ACTTTAACTCAGGTTCCTAATGGGACAGCAGGCTTGTCAATCCCACTTGCCCCCGTGGCTCACACCAGAAAACTACCAGCAGTGTGAGTAAGGACAGAAGCAGGAGACGGAGGAGCCAGGGTTGGGGAATCCCACAGCAACCCACAGGCCCTCAT----CACACACGGCAAGGATGCGCCCTCACTGGGCTCACCACCACCACTCGACATCACCT-------TCACTACCTTATACCCTGCCTGGATAACACCA
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     10176 247 +     18337 CCTTTAACTCAGGTTCCTAATGTGACAGCAGGCTTGTCAATCCCACTT-GCCCTGTGGCTTACACCAGAAAACTACCAGCAGTGTGAGTAAGGACAGAAGCAGGAGACAGAGGAGCCAGGGTTTGGGAATCCCACAGCAACCCACAGGCCCTCAT----CACACACA-CAAGGATGCGCCCCCACTGGGCTCACCA-CACCATTCGACATCACCTTTCAGCCTCACTACCTGATAACCTGCCTGGATAACCCCA
i macFas5.chr7_KE145676_random C 0 C 0
s macNem1.NW_012011934v1         1901094 249 -   2379783 ACTTTAACTCAGGTTCCTAATGTGACAGCAGGCTTGTCAATCCCACTTGGCCCTGTGGCTCACACGAGAAAACTACCAGCAGTGTGAGTAAGGACCGAAGCAGGAGACAGAGGAGCCAGGGTTTGGGAATCCCACAGCAACCCACAGGCCCTCAT----CACACACAGCAAGGATGCGCCCTCACTGGGCTCACCA-CACCATTCAACATCACCTTTCAGCCTCAGTACCTGATAACCTGCCTGGATAACCCCA
i macNem1.NW_012011934v1       C 0 n 0
s chlSab2.chr26                  4263086 249 -  58131712 ACTTTAACTCAGGTTCCTAATGTGACAGCAGGCTTGTCAATCCCACTTGGCCCTGTGGCTCACACGAGAAAACTACCAGCAGTGTGAGTAAGGACCGAAGCAGGAGACAGAGGAGCCAGGGTTTGGGAATCCCACAGCCACCCACAGGCCCTCAT----CACACACAGCAAGGATGTGCCCTCACTGGGCTCACCA-CACCATTCAACATCACCTTTCAGCCTCAGTACCTGATAACCTGCCTGGATAACCCCA
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3990357 249 +   4457520 ACTTTAACTCAGGTTCCTAATGTGACAGCAGGCTTGTCAATGCCACTTGGCCCTGTGGCTCACACGAGAAAACTACCAGCAGTGTGAGTAAGGACAGAAGCAGGAGACAGAGGAGCCAGGGTCTGGGAATCCCACAGCAACCCACAGGCCCTCAT----CACACACAGCAAGGATGCGCCCTCACTGGGCTCACCA-CACCATTCGACATCACCTTTCAGCTTCACTACCTGATAACCTGCCTGGATAACCCCA
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3907040 235 + 158406734 ACTTTAACTCAGGCTCCTAGTGTGACAGCAGCTGTGCCAACCCCACTTGCCCCTGTGGCTCACACCAGA-AACTACTAGAGGTGTG---AAGGACAAGAGAAAGAGAAAGAGGAGCCAGGGTTTGGGAAT----------CCCACAGGCCCTCAT--CACACACACGGCAAGGATGCACCCTCACTGGGCTCACCACCATC---TGACATCACCTTCCAACTTCACTCCCTGAAAACCTGCCTGGATAACAACA
i calJac3.chr6                 C 0 C 0
s saiBol1.JH378292               2351175 220 +   2682657 ACTTTAACTCAGGTTCCTAGTGTGACAGCAGGTGTGTCAATCCCACTTGTCCCTGTGGCTCACACCAGACAACTACCAAAGGTGTG---ACGGACAGGAGCAGGAGACAGAGGAGCCAGGGTTTGGGAAT----------CCCACAGGCCCTCAT--CACACACACGAC---GACGCACCCTCACTGGGCTCACCAC-------------CACCTTGCAACTTCACTCCCTGAAAACCTGCCTGGGT---AACA
i saiBol1.JH378292             C 0 C 0
s cebCap1.NW_016107707v1         1729574 236 +   2086007 ACTTTAACTCAGGTTCCTAGTGTGACAGCAGGTGTGCCAATCCCACTTGCCCCTGTGGCTCACACCAGACAACTACCAGAGGTGTG---AAGGACAGGAGCAGGAGACAGAGGAGCCAGGGTTTGGGAAT----------CCCACAGGCCCTGAT--CACACACACGGCAAGGATA---CCTCACTGGGCTCACCACCACCATTCAACATCACCTTCCAACTTCACTCCCTGAAAACCTGCCTGGATAACACCA
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3411593 240 -   3831555 -CTTTAACTCAGGTTCCTAGTCTGATAGCAGGTGTGCCAATCCCACTTGCCCCTGTGGCTCACACCAGACAACTACCAGAGGTGTG---AAGGACAGGAGCAGGAGACAGAGGAGCCAGGGTTTGGGAAT----------CCCACAGGCCCTCATCACACACACACGGCAAGGATGCACCCTCACTGGGCTCACCACCACCATTCGACATCACCTTCCAACTTCACTCCCTGAAAACCTGCCTGGATAATAACA
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186   0 +    138091 C
e cerAty1.NW_012002601v1         1559014 1830 +   1584492 M
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=1311561.000000
s hg38.chr15_KI270851v1_alt       119983 367 +    263054 CTGTAACACAAGAAACAGGTCTAGAATCTAGCATGTATGCTACACCTGAAGGAGCAAGAGACGGTAATACAATACAATGAAATTTTTAGTTTA----TTTAATATAAAATTTAGAGCCATAATCAAAATGTGTAATTCTGATGGGATTCACTACTTATAAAAACTTTGCAGCGCTCTATTTTCAAATGTAAATGGTATTCTGTGGCTCCTCGCCAGCAAGTAAATAACGATCTACTCTGAAATACGTTTCACGGCTTATTTTTGGCAAGCAGCGATTTCTCCAACTCACGTTTTCCAAGGGAAAAAAGGACATGAAATGTCTCCAAAAGTCTCTTACGATCTTTAGATAAACTACTGTTCAACAACTGCAT
s panTro5.chr15                  9376937 367 +  83230942 CTGTAACACAAGAAACAGGTCTAGAATCTAGCATGTATGCTACACCTGAAGGAGCAAGAGATGGTAATAAAATACAATTAAATTTTTAGTTTA----TTTAATATAAAATTTAGAGCCATAATCAAAACGTGTAATTCTGATGGGGTTCACTACTTATAAAAACTTCACAGCGCTCTATTTTCAAATGTAAATGGTATTCTGTGGCTCCTCGCCAGCATGTAAATAATGATTTACTCTGAAATACGTTTCACGGCTTATTTTTGGCAAGCAGCGATTTCTCCAACTCACGTTTTCCAAGGGAAAAAAGGACATGAAATGTCTCCAAAAGTCTCTTACGATCTTTAGATAAACTACTGTTCAACAACTGCAT
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25862707 367 +  99763055 CTGTAACACAAGAAACAGGTCTAGAATCTAGCATGTATGCTACACCTGAAGGAGCAAGAGATGGTAATAAAATACAATGAAATTTTTAGTTTA----TTTAATATAAAATTTAGAGCCATAATCAAAACGTGTAATTCTGATGGGGTTCACTACTTATAAAAACTTCACAGCGCTCTATTTTCAAATGTAAATGGTATTCTGTGGCTCCTCGCCAGCATGTAAATAATGATTTACTCTGAAATACGTTTCACGGCTTATTTTTGGCAAGCAGCGATTTCTCCAACTCACGTTTTCCAAGGGAAAAAAGGACATGAAATGTCTCCAAAAGTCTCTTACGATCTTTAGATAAACTACTGTTCAACAACTGCAT
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           21192 367 +    551209 CTGTAACACAAGAAACAGGTCTAGGATCTAGCATGTATGCTACACCTGAAGGAGCAAGAGATGGTAATAAAATACAATGAAATTTTTAGTTTA----TTTAATATAAAATTTAGAGCCATAATCAAAATGTGTAATTCTGATGGGATTCACTACTTATAAAAACTTTGCAGCGCTCTATTTTCAAATGTAAATGGTATTCTGTGGCTCCTTGCCAGCATGTAAATAACGATTTACTCTGAAATACGTTTCATGGCTTATTTTTGGCAAGCAGCAATTTCTCCAACCCACGTTTTCCAAGGGAAAAAAGGACATGAAATGTCTCCAAAAGTCTCTTACAATCTTTAGATAAACTACTGTTCAACAACTGCAT
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     10423 371 +     18337 CTGTAACACAAGAAACAGGTCTAGAATCTAGCATGGAAGCTACACCTGAAGGAGCAAGAGACGGTAATACAATACAGTGACATTTTTAATTTATTTCGTTCATATAAAATTTAGAGCCATAATCAAAACGTGTAATTCTGATGGGGTTTACTACTTACAAAAACTTCACGGCGCTCTATTTTCAAATGGAAATGGTGTTCTGTGGCTCCTGGCCAGCATGTAACTAAAGAGTTACTCTGAAATCCGTTTCACGGCTTATTTTTAGCAAGCAGCAATTTCTTCAACCCAGGTCTTCCAAGGGAAAAAAGGACATGAAATGTACCCAAAAGTCTCTTACAATCTTTAGATAAACTACTGTTCAAGAACCGCAT
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4263335 337 -  58131712 CTGTAACACAAGAAACAGGTCTAGAATCTAGCATGTAAGCTACACCTGAAAGAGTAA-AGACAGTAATAAAACACAATAAAATTTT--ATTTA--------ATATAAAACTTAGAGCCATAATCACAATGTGTAATTCTGATGGGGTTCACTACTTATAAAAACTTCACAGCGCTTTATTTTGAAATGTAAATGGTATTCTGTGGCTCCTTGCCAGCATGTAAC-----------------------TTCACGGCTTATTTTTGGCAAGCAGTGATTTCTTCAACCCACGTTTCCCAAGGGAAAAAAGGACATGAAATGTCTCCAAAAATCTCTTCCAATCTTTAGATAAACTACTATTCAACAACTGCAT
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3990606 346 +   4457520 CTGTAACACAAGAAACAGGTCTAGAATCTAGCATGTAAGCTACACCTGAAGGAGCAAAAGACAGTAATAAAATACAATAAAATTTC--GTTTATATATTTAATATAAAACTTAGAGCCATAATCACAACGTGTAATTCTGATGGGGTTCACTACTTATAAAAACTTCATAGTGCTTTATTTTGAAATGTAAATGGTATTCTGTGGTTCCTTACCAGCATGTAAC-----------------------TTCACAGCTTATTTTTGGCAAGCAGTGATTTCTTCAACCCATGTTTTCCAAGGGAAAAAAGGACATGAAATATCTCCAAAAATCTCTTCCAATCTTTAGATAAACTACTATTCAACAACTGCAT
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3907275 319 + 158406734 CTGCAACACAAGAAACAGGTCTAGAATCTTCCATGTATGCTACACCTGAAGGAGGAAAAGACAGTAATAAAATACAATGAAGTTTTTAATTTGTTTCGTTAATATAAAATTCAGAGCCATAATC------------------------------------AAACTTCACAGCGCTTCATCTTCAAATGTAAATGGTA-TCCATGGCTCCTTGCCAGTTTGCAACTGAAGAGTTACCCTGAAATC----------CTTATTTTTAGCAAGCAGCAATTTCTTCAACCCACGTTTTCCAA-GGAAAAAAAAACATGAAATGTCTCCAAAAATCTCTTACAGTCTTTCG----ACTAGTGTTCAACAACTGCGT
i calJac3.chr6                 C 0 C 0
s saiBol1.JH378292               2351395 326 +   2682657 CTGCAACACAAGACACAGGTCTAGAATCTGCCATGTATGCTACACCTGAAGGAGGAAAAGACAGtaataaaatacaatgaaattttaaatttatttctttaatataaaattCAGAGCCATAATC------------------------------------CAACTTCACAGCACTTCATCTTCACATGTAAATGCTGCTCCACGGCTCCTTGCCAGCATGCAACGGAAGAGTTACTCTGAGATCCATCTGGCCGCTGATTTTTAGCAAGCAGCAATTTCTTCAACCCACGTTTTCCAA-GGAAAAAAGGACATGAAATGTCTCCAGAAATCTCTT--AGTCTTTAG----AC--GTGTTCAACAACTGCAT
i saiBol1.JH378292             C 0 M 1420
s cebCap1.NW_016107707v1         1729810 330 +   2086007 CTGCAACACAAGACACAGGTCTAGAATCTGCCATGTATGCTACACCTGAAGGAGGAAAAGATAGTAATAAAATACAATGAAATTTTTAATTTATTTCTTTAATATAAAATTCAGAGCCATAATC------------------------------------AAACTTCACAGCGCTTCATCTTCAAATGTAAATGGTATTCCCTGGCTCCTTGCCAGTATGCAACTGAAGAGTTACTGTGAAATCCATTTGGCAGCTTATTTTTAGCAAGCAGCAATTTCTTCAACCCACATTTTCCAA-GGAAAAAAGGACATGAAATGTCTCCAGAAATCTCTTACAGTCTTTAG----ACTAGTGTTCAACAACTGCAT
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3411833 330 -   3831555 CTGCAACACAAGAAACAGGTCTAGAATCTGCCATGTATGCTACACCTGAAGGAGGAAAAGATAGTAATAAAATACAATGAAATTTTTAATTTATTTCTTTAAGATAAAATTCAGAGCCATAATC------------------------------------AAACTTCACAGCGCTTCATCTTCAAATGTAAATGGTATTCCATGGCTCCTTGCCAGTATGCAACTGAAGAGTTACTCTGAAATCTGTTTGGCGGCTTATTTTTAGCAAGCAGCAATTTCTTCAACCCACGTTTTCCAA-GGAAAAAAGGACATGAAATGTCTCCAGAAATCTCTTACAGTCTTTAG----ACTAGTGTTCAACAACTGCAT
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186   0 +    138091 C
e cerAty1.NW_012002601v1         1559014 1830 +   1584492 M
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=2349343.000000
s hg38.chr15_KI270851v1_alt       120350 693 +    263054 CTGCCAAGTCAACACA--TCAAGAATCCTTCACTCACAAACACTTAAGGTGAGAAAACAGTGTCTACCCATGC-GGGAGAGGGACACATGATCCATGCTTATGAAGACAGCCTGGA-TATCGGCTACTGGAAAGCTGCGAATGCATTTTTCTTTTTCTACTTTCCAAAATTTTTGTGAGGTGATACTTAtttctatgtttgtgtctattctttctattttgtatttttt-aGTAGGTACATCCTTACTATAAATCTGCTGTAGAACCAATGTCCCATACAGGACCCCACGTGCCACAGGAACCAAAAAGTCACACGCAGCGAAGAC-GAAGACACAGGAGACAACCTGTGTGGACAGCACAGAGCCACCTGCCCAGGACACCAATGGAGCCACAGGTGCAATTCAGAATGTTCTTAGT------------------CGTATTAATAAACATggccaggtgcggtggctcacgccggtaatcccaacactttgggaggctgaggtgggcagattacctgagtttgggagttcaagaccgtcctggccaacatggtgaaaccccatctctactaaaaatacaaaaatcagccaggtatggtggcatgcttctgttagtcccagccactcaggaggttgaggcaggagaatcatttgaacccaggaggcagaggctgcagtgagctgagatcgtgctactgcactccagtccaggcaaca
s panTro5.chr15                  9377304 694 +  83230942 CCGCCAAGTCAACACA--TCAAGAATCCTTCACTCACAAACACTTAAGGTGAGAAAACAGTGTCTACCCATGC-AGGAGAGGGAAACATTATCTATGCTTATGAAGACAGCCTGGACTATCGGCTACTGAAAAACTGTGAATGCATTTTTCTTTTTCTACTTTCCAAAATTTTTGTGAGGTGATACTTACttctatgtttgtgtctattctttttattttgtatttttt-aGTAGGTACATCCTTACTATAAATCTGCTGTAGAACCAATGTCCCATACAGGACCCCACATGCCACAGGAACCAAAAAGTCACATGCAGCGAAGAC-GAAGACACAGGAGACAACCTGTGTGGACAGCACAGAGCCACCTGCCCAGGACACCAATGGAGCCACAGGTGCAATTCAAAATGTTCTTAGT------------------CGTATTAATAAACATggccaggtgcggtggctgacgcctgtaatcccaacactttgggaggctgaggtgggcagattacctgaggttgggagttcaagaccatcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggtatggtggcatgcttctgttagtcccagccactcaggaggttgaggcaggagaatcatttgaacccaggaggcagaggctgcagtgagctgagatcatgctactgcactccagtccaggcaaca
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25863074 696 +  99763055 CCGCCAAGTCAACACACGCCAAGAATCCTTCACTCACAAACACTTAAGGTGAGAAAACAGTGTCTACCCATGC-AGGAGAGGGAAACATTATCTATGCTTATGAAGACAGTCTGGACTATTGGCTACTGAAAAACTGTGAATGCATTTTTCTTTTTCTACTTTCCAAAATTTTTGTGAGGTGATACTTACttctatgtttgtgtctattctttttattttgtatttttt-aGTAGGTACATCCTTACTATAAATCTGCTGTAGAACCAATGTCGCATACAGGACCCCACATGCCACAGGAACCAAAAAGTCACATGCAGCGAAGAC-GAAGACACAGGAGACAACCTGTGTGGACAGCACAGAGCCACCTGCCCAGGACACCAATGGAGCCACAGGTGCAATTCAAAATGTTCTTAGT------------------CGTATTAATAAACATggccaggtgcggtggctgacgcctgtaatcccaacactttgggaggctgaggtgggcagattacctgaggttgggagttcaagaccatcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggtatggtggcatgcttctgttagtcccagccattcaggaggttgaggtaggagaatcatttgaacccaggaggcagaggctgcagtgagctgagatcatgctactgcactccagtccaggcaaca
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           21559 693 +    551209 CCGCCAAGTCAACACA--TCAAGAATCCTTCACTCACAAACACTTAAGGTGAGAAAACAGTGTCTACCCATGC-AGGAGAGGGACACATTATCCATGCTTATGAAGACAGCCTGGA-TATCGGCTACTGGAAAGCTGCGAATGCATTTTTCTTTTTCTACTTTCCAAAATTTTTGTGAGGTGATACttatttctatgtttgtgtctattctttttattttgtatttttT-AGTAGGTACATCCTTACTATAAATCTGCTGTAGAACCAATGTCCCATACAGGACCCCACATGCCACAGGAACCAAAAAGTCACACGCAGCGAAGAT-GAAGACACAGGAGACAACCTGTGTGGACAGCACAGAGCCACCTGCCCAGGACACCAACGGAGCCACAGGTGCAATTCAAAATGTTCTTAGT------------------CGTATTAATAAACATggccaggtgcggtggctcacgcctgtaatcccaacactttgggaggctaaggtgggcagattacctgaggttgggagttcaagaccatcctggccaacatggtgaaaccccatctgtactaaaaatacaaaaattagccaggtatggtggcatgcttctgttagtcccagccactcaggaggttgaggcaggagaatcatttgaacccaggaggcagaggctgcagtgagctgagatcgtgctactgcactccagtccaggcaaca
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     10794 676 +     18337 CCGCCAAGTCAACACA--TCAAGAATCCTTCGATCACAAACACTTAAGGTGAGAAAACAGGGTCTATCGGTGT-GGGAGACGGACACATTATCCACGCTTATGAA-ACGGTCTGGACTATCGGCTACTGAAAAGCTGTGAATGCATTTTTCTTTTTCTACTTTCCAAAATTTTGGTGAGGTGATAA------CTATGTTTGTTTCTATTC-----------TATTTTTTTAGTAGGTACATCCTTATTATAAATCAACTGTAGAACGAATGTCCCATACGGGACCCCACGTGCCAAAAGAACCAAAAAGTCACACGCAGCGAAGAT-GAAGACACAGGAGACAACCTGTGTGGACAGCACAGAGCCACCTGCCCAGGACACCAGTGCAGCCACAGGTGCAATTCAACATGTTCTTAGC------------------TGTCTTAATAAACATggccaggtgcggtggctcacacctgtaatcccaacactttgggaagccgaggcgggcagattaactgaggttgggagttcaagaccaccccagccaacatggtgaaaccccatctctactaaaagtacaaaaattagccaggtatggtggcacgcatctt-tagtcccagccactcaggaggttgaggcaggagaatcatttgaacccaggaggcagagcctgcagtgagctgagatcccgccactgcactccagtccgggcaaca
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4263672 687 -  58131712 CCGCCAAGTCAACACA--TCAAGAATCCTTCAATCACAAACACTT-AGGTGAGAAAACAGTGTCTATCCACAC-AGGAGAGGGACACATTATCCATGCTTATGAAGACAGCTTGGACTACTGGCTACTGAAAAGTTGTGAATGCATTTTTCTTTTTCTACTTTCCAAAAATTTTGTGAGGTGATAA------CTATGTTTGTTTCTATTCTTTTTATTTTGTATTTTTAAAGTAAGTACATCCTTATTATAAATCTGCTGTAGAACGAATGACCCATACAGGACCCCACGTGCCAAAGGAACCAAAAAGTCACACACAGCGAAGAT-GAAGACACAGGAGACAACCTATGTGGACAGCACACAGCCACCTGCCCAGGACACCAATGGAGCCACAGGTGCAATTCAAAACGTTCTTAGT------------------TGTATTAATAAATGTggccaggtgtggtggctcacacctgtaaacccaacactttcggaggctaaggcgggcagattacctgaggatgggagttcaagatcaccctagccaacatgcgaaaactccatctctactaaaaatacaaaaattagtcaggtatggtggcatgcacctg-acgtcccagccacttaggaggctgaggcaagagaatcatttgaacccaggaggcagaggttgcaatgagctgagattgtgccgctgcactccagtccaagaaaca
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3990952 686 +   4457520 CCGCCAACTCAACACA--TTAAGAATCCTTCAATCACAAACACTT-AGGTGAGAAAACAGTGTCTATCCATGC-AGGAGAGGGACACATTATCCATGCTTATGAAGACAGCCTAGACTACTGGCTACTGAAAAGTTGTGAATATATTTTTCTTTTTCTACTTTCCAAAAATTTTGTGAGGTGACAA------CTATGTTTGTTTCTATTCTTTTTATTTTGTATTTTTTAAGTAAGTACATCCTTATTACAAATCTGCTGTAGAACCAATGACCCATACAGGATCCCACGTGCCAAAGGAACCAAAAAGTCACACACAGCGAAGAT-GAAGACACAGGAGATAACCTATGTGGACAGCACAGAGCCACCT-CCCAGGACACCAATGGAGCCACAGGTGCGATTCAAAATGTTCTTAGT------------------TGTATTCATAAATGTggccaggtgcgggggctcacacctgtaaacccaacactttcggaggctaaggcgggcagatgacctgaggatgggagttcaagatcaccccagccaacatgcggaaactccatctctactaaaaatacaaaaattagtcaggtatggtggcatgcacctg-acgtcccagccacttaggaggctgaggcaagagaatcatttgaacccaggaggcagaggttgcagtgagctgagattgtgccgctgcactccagtccgggcaaca
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3907594 711 + 158406734 CCGCCACATCAACACA--TCAAGAGTCCTTCCATCACCAACACCTAAGGTAAGAAAACGGCATCCATCCACAAGAGGAGAGGGACCTATTCTCTACACTTATGAACACAGCCTGAACCGTCGGCTACTGAGAAGCTGTGAATGCATTTTTGTTTTTCTATCTTCCAAAATGTTTGTGAGGTGACACTTATTTCTATGATTGTTTCTACTCTTTTTACTTTGTTCTTTTTTAGTAGGTACACCCTTATTATGAATCTGCTGTAGAACCATTGTGCCATACAGGACCCCACATGCCACAGGAACCAAAAAGTCACACGCAGTGAAGAT-GAAGACACAGGAGACAATCTGTGTGGACAGCACAGAGCCACCTGCCCAGAACACCAATGGAGCCACAGGTGCAATTCAAAACGTCCTTAATTTACTAATTTATCAATAATTTATTAACAAATATggctaggtatggtggctca-gcctgtaatcccagcactttgggaggccaatgcaggcagatgacctgaggttgggagttcaagaccaccctggtcaacatggagaaatcccatctctactaaaaatacaaaaattagccaggcatggtggtgtgtaccta-tagtcccagctactcaggaggctgaggcaggagaatcatttgaacccaggaggcagaggttgcagtgagtgaagattgtgccactgcactcaagtccgggcaaT-
i calJac3.chr6                 C 0 C 0
s cebCap1.NW_016107707v1         1730140 712 +   2086007 CCGCCACATCAACACA--TAAAGAGTCCTTCCATCACCAACACTTAAGGTAAGAAAACGGCATCTATCCATGCAAGGAGAGGGACATATTCTCTATGCCTACGAACACAGCCTCAACTATCGGCTACTGAAAAGCTGTGAATGCATTTTTCTTTTTCTACCTTCCAAAATGTTTGTGAGGTGACACTTATTTCTATGATTGTTTCTACTCTTTTTACTTTGTTCTTTTTTAGTAGGTACACCCTTATCATGAATCTGCTGTAGAACCAATGTGCCATACAGGACCGCAGATGCCACAGGAACCAAAAAGTCATATGCAGTGAAGAT-GAAGACACAGGAGACAATCTGTGTGGACAGCAGAGAGCCACCTGCCCAGGACACCAATGGAGCCACAGATGCAATTCAAAACTTTCttaatttactaatttatcaataatttattaataaatGTggctaggtatggtggctca-gcctataatcccagcactttgggaggccaatgcaggcagatcacctgaggatgggcgttcaagaccaccctggccaacatggtgaaatcccatctctactaaaaatacaaaaattagccgggcatggtggcatgtaccta-tagtcccagctactcaggaggctaaggcaggagaatcatttgaacccaggaggcagaggttgcagtgagccgagattgtgccactgcactcaagtccgggcaaca
i cebCap1.NW_016107707v1       C 0 I 312
s aotNan1.NW_018503298v1         3412163 708 -   3831555 CTGCCACATCAACACA--TCAAGAGTCCTTCCATCACCAACACTCACGGTAAGAAAATGGCATCTATCCATGCAAGGAGAGGGACATACTCTCTACGCTTACGAACACAGCCTGAACTACTGGCTACTGAAAAGCTGGGAATGCATTTTTCTTTTCCTACCTTCCAAAATCTTTGTGAGGTGACACTGATTTCTATGATTGTTTCTACTCTTTTTACTTTGTTCTTTTTTAGTAGGTACACCCTTATTATGAATCTGCTGTAGAACCAATGTGCCATACAGGACCCCACATGCCACAGGAACCAAAAAGTCACACGCAGTGAAGATGGAAGACACAGGAGACAATCTGTGTGGACAGCACAGAGCCACCTGCCCAGGACACCAATGGAGCCACAGGTGCAATTCAAAACGTTCTTCATTTACTAATTTATCAATAATTTATTAATAAATGTggctaggtatggtggctca-gcctgtaatcccagcactttgggaggccaatgcaggcagatcatctgaggttgggagttcaagaccaccctggccagcatggtgaaatcccat-----ttaaaaatacaaaaattagctgggcatggtggcacgtaccta-tagtcccagatactcaggcggctgaggcaggagaatcatttgaacccaggaggcagaggttgcagtgagctgagattgtgccactgcactcgagtctgggcaaca
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186   0 +    138091 C
e cerAty1.NW_012002601v1         1559014 1830 +   1584492 M
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2351721 1420 +   2682657 M

a score=2800.000000
s hg38.chr15_KI270851v1_alt       121043 1 +    263054 g
s panTro5.chr15                  9377998 1 +  83230942 g
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25863770 1 +  99763055 g
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           22252 1 +    551209 g
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     11470 1 +     18337 g
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4264359 1 -  58131712 g
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3991638 1 +   4457520 g
i colAng1.NW_012115278v1       C 0 C 0
s aotNan1.NW_018503298v1         3412871 1 -   3831555 g
i aotNan1.NW_018503298v1       C 0 I 607
e cebCap1.NW_016107707v1         1730852 312 +   2086007 I
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186 0 +    138091 C
e cerAty1.NW_012002601v1         1559014 1830 +   1584492 M
e macNem1.NW_012011934v1         1901343 0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2351721 1420 +   2682657 M
e calJac3.chr6                   3908305 0 + 158406734 C

a score=32902.000000
s hg38.chr15_KI270851v1_alt       121044 39 +    263054 agtgaggatccatctcCGGGTGGGGAAAAAAA---------------------ATTGTTC-
s panTro5.chr15                  9377999 39 +  83230942 agtgaggatccatctcTGGGTGGGGAAAAAAA---------------------ATTGTTC-
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25863771 39 +  99763055 agtgaggatccatctcTGGGTGGGGAAAAAAA---------------------ATTGTTC-
i panPan2.chr15                C 0 n 0
s gorGor5.CYUI01015853v1           22253 39 +    551209 agtgaggatccatctcTGGGTGGGGAAAAAAA---------------------ATTGTTC-
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     11471 23 +     18337 agtgaggctccatctcagg--ggaa------------------------------------
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4264360 37 -  58131712 agtgaaactccatctcggg--cggaaaaaaaa---------------------aTTGTTC-
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3991639 37 +   4457520 agtgaaactccatcttggg--tggaaaaaaaa---------------------aTTCTTC-
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3908305 54 + 158406734 -------TTTCTCCTCTGAGGAGGAGAAAatatatatatatatatatatatttatTTTCCC
i calJac3.chr6                 C 0 C 0
e aotNan1.NW_018503298v1         3412872 607 -   3831555 I
e cebCap1.NW_016107707v1         1730852 312 +   2086007 I
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186  0 +    138091 C
e cerAty1.NW_012002601v1         1559014 1830 +   1584492 M
e macNem1.NW_012011934v1         1901343  0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2351721 1420 +   2682657 M

a score=35504.000000
s hg38.chr15_KI270851v1_alt       121083 71 +    263054 TTAGTCACATTaacaaaagtaaaaaaaaa----------aaaaaaacacac----caacaagaaaaacaacaacacataaaatta
s panTro5.chr15                  9378038 69 +  83230942 TTAGTCACATTaacaaaagt--aaaaaaa----------aaaaaaacacac----caacaagaaaaacaacaacatataaaaTTA
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25677696 45 +  99763055 Ttagtcacatt-----aagtaaaaaaaaa----------acaaaaa-------------------------aacacataaaacta
i panPan2.chr15                n 0 C 0
s gorGor5.CYUI01015853v1           22292 75 +    551209 TTAGTCACATTAACAAAAGTAAAAAAAAA----------AAACACACACACACATCAACAAGAAAAACAACAACACATAAAATTA
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     11494 30 +     18337 --------------aaaagcaaaacaaac-------------------caa---------------------acaaa-aaACCAC
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4264397 54 -  58131712 Ctagtcacattaataaaagtaaaacacac----------acacacacacac---------------------acaaataaaactc
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3991676 64 +   4457520 CTAGTCACATTAATAAAAGTaaaaaaaaaaaaaaaaaaaaaaaaaaaacac---------------------acaaataaaactc
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3908359 43 + 158406734 TTAGTCAAATT-----AAGTTAAAAAAAA----------AAAAACCCACAT---------------------------AAAATTA
i calJac3.chr6                 C 0 I 176
e aotNan1.NW_018503298v1         3412872 607 -   3831555 I
e cebCap1.NW_016107707v1         1730852 312 +   2086007 I
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186  0 +    138091 C
e cerAty1.NW_012002601v1         1559014 1830 +   1584492 M
e macNem1.NW_012011934v1         1901343  0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2351721 1420 +   2682657 M

a score=7411.000000
s hg38.chr15_KI270851v1_alt       121154 7 +    263054 attgtac
s panTro5.chr15                  9378107 7 +  83230942 ATTGTAA
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25677741 7 +  99763055 attttaa
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           22367 7 +    551209 ATTGTAA
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     11524 1 +     18337 ------A
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4264451 7 -  58131712 attttaa
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3991740 7 +   4457520 gttttag
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3908578 7 + 158406734 attttaa
i calJac3.chr6                 I 176 C 0
e aotNan1.NW_018503298v1         3412872 607 -   3831555 I
e cebCap1.NW_016107707v1         1730852 312 +   2086007 I
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186 0 +    138091 C
e cerAty1.NW_012002601v1         1559014 1830 +   1584492 M
e macNem1.NW_012011934v1         1901343 0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2351721 1420 +   2682657 M

a score=482164.000000
s hg38.chr15_KI270851v1_alt       121161 146 +    263054 taatggctggttgcagtggctcatgcctgtaatcccagcactctgggaagccaaagcgggcaga-ttacttgaggtcaggagttcgagaccagcctggccaacatggtgaaactctgtctctac--aaaaatac-----------------aaaaatcagccaggc
s panTro5.chr15                  9378114 146 +  83230942 TAATggctggttgcagtggctcatgcctgtaatcccagcactctgggaagccaaggcgggcaga-ttacttgaggtcaggagttcgagaccagcctggccaacatggtgaaactctgtctctac--aaaaatac-----------------aaaaatcagccaggt
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25677748 147 +  99763055 taatggccaggcgtggtggctcacgcctgcaatcccagcactttgggaggccaaggcgggcagagttacttgaggtcaggagttcgagaccagcctggccaacaaggtgaaaccctgtctctac--aaaaatac-----------------aaaaatcagcaaggc
i panPan2.chr15                C 0 n 0
s gorGor5.CYUI01015853v1           22374 146 +    551209 TAATggctgggtgcagtggctcatgcctgtaatcccagcactctgggaagccaaggcgggcaga-ttacttgaggtcaggagttcgagaccagcctggccaacacagtaaaactctgtctctac--aaaaatac-----------------aaaaatcagccaggc
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     11525 163 +     18337 TGAGggctgggcgcggtggctcaagcctgtaatcccagcactttgggaggccgagacgggcgga-tcac--gaggtcaggagatcgagaccatcctggttaatacggtgaaaccccgtctctactaaaaaatacaaaaaaaaaaaaaaaaaaaaaactagccaggc
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4264458 145 -  58131712 taatggtcaggcacggtggctcacacctgcaatcccagcactttgggaggccaaggcgggcaga-ttacttgaggtcaggagttcgagaccagcctggccaacatagt-aaactctgtctccac--aaaaatac-----------------aaaaatcagccaggt
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3991747 137 +   4457520 taatggtcaggcgcggtggctcacgcctgcaatcccagcactttgggaggccaa--------ga-ttacttgagatcaggagttcgagaccagcctggccaacatggt-aaactctgtctccac--aaaaatac-----------------aaaaatcagccaggc
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3908585 145 + 158406734 taatGGc-aggcacagtggctcacgcctgtaatcccaacacttttggaggccaaggtgggcaga-ttacttgaggtcaggagtccaagaccagcctggccaatatggtgaaactccatctctag--aaaaatac-----------------aaaaatcagtcaggc
i calJac3.chr6                 C 0 C 0
s cebCap1.NW_016107707v1         1731164 146 +   2086007 TAATggctgggcacagtggctcacgcctgtaatcccaacacttttggaggccaaggcggacaga-ttacttgaggtcaggagttcaagaccagcccggccaacatggtgaaactccatctctag--aaaaacac-----------------aaaaatcagtcaggc
i cebCap1.NW_016107707v1       I 312 C 0
s aotNan1.NW_018503298v1         3413479 146 -   3831555 TAATggctgggcacagtggctcacgcctgtaatcccaacacttttggaggccaaggcgggtaga-ttacttgaggtcaggagttcaagaccagcctggccaatatggtgaaactccatctctag--aaaaatac-----------------aaaaatcagtcaggc
i aotNan1.NW_018503298v1       I 607 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186   0 +    138091 C
e cerAty1.NW_012002601v1         1559014 1830 +   1584492 M
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2351721 1420 +   2682657 M

a score=12304.000000
s hg38.chr15_KI270851v1_alt       121307 4 +    263054 gtgg
s panTro5.chr15                  9378260 4 +  83230942 gtgg
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25863916 4 +  99763055 GTGG
i panPan2.chr15                n 0 C 0
s gorGor5.CYUI01015853v1           22520 4 +    551209 gtgg
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     11688 4 +     18337 aagg
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4264603 4 -  58131712 atgg
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3991884 4 +   4457520 gtgg
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3908730 4 + 158406734 atgg
i calJac3.chr6                 C 0 C 0
s cebCap1.NW_016107707v1         1731310 4 +   2086007 atgg
i cebCap1.NW_016107707v1       C 0 I 4
s aotNan1.NW_018503298v1         3413625 4 -   3831555 atgg
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186 0 +    138091 C
e cerAty1.NW_012002601v1         1559014 1830 +   1584492 M
e macNem1.NW_012011934v1         1901343 0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2351721 1420 +   2682657 M

a score=10476.000000
s hg38.chr15_KI270851v1_alt       121311 3 +    263054 tgg
s panTro5.chr15                  9378264 3 +  83230942 tgg
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25863920 3 +  99763055 TGG
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           22524 3 +    551209 tgg
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     11692 3 +     18337 tgg
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4264607 3 -  58131712 tgg
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3991888 3 +   4457520 tgg
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3908734 3 + 158406734 tgg
i calJac3.chr6                 C 0 I 1
s aotNan1.NW_018503298v1         3413629 3 -   3831555 tgg
i aotNan1.NW_018503298v1       C 0 I 6
e cebCap1.NW_016107707v1         1731314 4 +   2086007 I
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186 0 +    138091 C
e cerAty1.NW_012002601v1         1559014 1830 +   1584492 M
e macNem1.NW_012011934v1         1901343 0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2351721 1420 +   2682657 M

a score=4992.000000
s hg38.chr15_KI270851v1_alt       121314 23 +    263054 tagtcccagctgctcgggagtct
s panTro5.chr15                  9378267 23 +  83230942 tagtcccagctgctcgggagtct
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25863923 23 +  99763055 TAGTCCCAGCTGCTCGGGAGTCT
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           22527 23 +    551209 tagtcccagctgctcaggagtat
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     11695  1 +     18337 ----------------------c
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4264610  1 -  58131712 ----------------------t
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3991891  1 +   4457520 ----------------------t
i colAng1.NW_012115278v1       C 0 C 0
e aotNan1.NW_018503298v1         3413632  6 -   3831555 I
e cebCap1.NW_016107707v1         1731314  4 +   2086007 I
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186  0 +    138091 C
e cerAty1.NW_012002601v1         1559014 1830 +   1584492 M
e macNem1.NW_012011934v1         1901343  0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2351721 1420 +   2682657 M
e calJac3.chr6                   3908737  1 + 158406734 I

a score=3832.000000
s hg38.chr15_KI270851v1_alt       121337 5 +    263054 gtagt
s panTro5.chr15                  9378290 5 +  83230942 gtagt
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25863946 5 +  99763055 GTAGT
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           22550 5 +    551209 gtagt
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     11696 5 +     18337 gggtg
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4264611 5 -  58131712 gtacg
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3991892 5 +   4457520 gtacg
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3908738 5 + 158406734 gtgca
i calJac3.chr6                 I 1 C 0
s cebCap1.NW_016107707v1         1731318 5 +   2086007 gtaca
i cebCap1.NW_016107707v1       I 4 C 0
e aotNan1.NW_018503298v1         3413632 6 -   3831555 I
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186 0 +    138091 C
e cerAty1.NW_012002601v1         1559014 1830 +   1584492 M
e macNem1.NW_012011934v1         1901343 0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2351721 1420 +   2682657 M

a score=418087.000000
s hg38.chr15_KI270851v1_alt       121342 141 +    263054 cctgtagtcccagctgctcaggaggctgaggcaggagaatcacttgaacccaagaggcggaggttgcagtgagccaagattgcaccactgcactccggtctggtcaacagagtaagattccatcttaaaaaataaaaata--------a
s panTro5.chr15                  9378295 141 +  83230942 cctgtagtcccagctgctcaggaggctgaggcaggagaatcacttgaacccaagaggcggaggttgcagtgagccaagattgcaccactgcactccggtctggtcaacagagtaagattccatcttaaaaaataaaaata--------a
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25863951 141 +  99763055 cctgtagttccagctgctcaggaggctgaggcaggagactcacttgaacccaagaggcggaggttgcagtgagccaagattgcaccactgcactccggtctggtcaacagagtaagattccatcttaaaaaataaaaata--------a
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           22555 141 +    551209 cctgtagtcgcagctgctcaggaggctgaggcaggagaatcacttgaacccaagaggcggaggttgcagtgagccaagattgcaccactgcactctggtctggtcaacagagtaagattccatcttaaaaaataaaaata--------a
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     11701 141 +     18337 cctgtagtctcagctattcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagctgagatccggccactgcactccagcctgggcaacacagcgagactccgtctcaaaaaaaaaaaaaa--------a
i macFas5.chr7_KE145676_random C 0 I 75
s chlSab2.chr26                  4264616 141 -  58131712 cctgtagccccagctgctcgggaggctgaggtaggaggatcacttgaacccaagaggcagaggttgcagtgagccaagattatgtcactgtactctggcctaggcaacagagcaagactccatctcaaaaaataaaaata--------a
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3991897 141 +   4457520 cctgtagtcccagctgcttgggaggctgaggtaggaggatcacttgaacccaagaggcagaggttgcagggagccaagattatgccactgtactctggcctaggcaacagagcaagactccatctcaaaaaataaaaaga--------a
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3908743 128 + 158406734 cctgtagtcccagctgctcaggaggctgaggcaggagaatcacttgaacctgggaggcagaggctgcagtgagccaagagtgtgccactgcaatcT-----------Caaagaa----------taaaaaaacaaaaataattttaata
i calJac3.chr6                 C 0 C 0
s cebCap1.NW_016107707v1         1731323 120 +   2086007 cctgtagtcccagctgctcaggaggctgaggcaggagaatcacttgaacgcgggaggcagaggttgcagtgagacaagactgtgccactgcaatcT-----------Caaagaa----------taaaaaaataaaaata--------a
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3413638 120 -   3831555 cctgtagtcccagctgctcaggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgcagtgagccaagactgtgccactgcaatcT-----------Caaagaa----------taaaaaaataaaaata--------a
i aotNan1.NW_018503298v1       I 6 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186   0 +    138091 C
e cerAty1.NW_012002601v1         1559014 1830 +   1584492 M
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2351721 1420 +   2682657 M

a score=314469.000000
s hg38.chr15_KI270851v1_alt       121483 119 +    263054 ttttaataatgtatcatagttattccaacagatcaaaaatatgaccatttcaacatgaaatcaatctaagaaaaa--ttattgagata-ttttacataggttatttcatattaagtcctcaa
s panTro5.chr15                  9378436 118 +  83230942 ttttaataatgtatcatagttattccaacagatcaaaaatatgaccatttcaacatgaaatcaatataagaaaaa--ttatt-agata-ttttacctaggttatttcatattaagtcctcaa
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25864092 119 +  99763055 ttttaataatgtatcatagttattccaacagatcaaaaatatgaccatttcaacatgaaatcaatataagaaaaa--ttattgagata-ttttacctaggttatttcatattaagtcctcaa
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           22696 119 +    551209 ttttaataatgtatcatagttattccaacagatcaaaaatatgaccatttcaacatgaaatcaatataagaaaaa--ttactgagata-ttttacataggttatttcatattaagtcctcaa
i gorGor5.CYUI01015853v1       C 0 C 0
s chlSab2.chr26                  4264757 116 -  58131712 ttttaacaatgcatcatacttgtcccaacagattgaaaatattatcatttcaacatgaaatcaatataagaaaaa--ttgttgagata-ttttacataggttatttca---taagtcctcag
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3992038 116 +   4457520 ttttaacaatgcatcatacttatcccaacagattgaaaatattaccatttcaacatgaaatcaatataagaaaaa--ttgttgagata-ttttacataggttatttca---taagtcctcaa
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3908871 121 + 158406734 ttttaataatgtaccatacttatcccaacagattgtaaatattaccacttcaccatgaaatcaatataagaaaaaagttactgagata-tttcacacaggtcatttcatattaagtcctcaa
i calJac3.chr6                 C 0 C 0
s cebCap1.NW_016107707v1         1731443 120 +   2086007 ttttaataacgtatcatacttatcccaacaggttgtaaatattaccatttcaacatgaaatcaatataagaaaaaa-ctactgagata-ttttacacaggtcatttcacattaagtcctcag
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3413758 120 -   3831555 tttt-ataatgtatcatacttatcccaacagattgtaaatattaccatttcaacatgaaatcaatataagaaaaaa-ttactaagatatttttacacaggtcatttcacattacatcctcaa
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186   0 +    138091 C
e cerAty1.NW_012002601v1         1559014 1830 +   1584492 M
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2351721 1420 +   2682657 M
e macFas5.chr7_KE145676_random     11842  75 +     18337 I

a score=658732.000000
s hg38.chr15_KI270851v1_alt       121602 200 +    263054 aaaccatctgagtagcttacatatgtaacacatttcaatttggaccgtgaaatttgcattgaaaacatctgatctccattt-agactcataaaatacacagttgacaaagtagactcccaaggccaagtgattctaaacatacttaagtgctttctaataacagaatcaaattttcaaacctgcattttAATGAATAAAAA
s panTro5.chr15                  9378554 200 +  83230942 aaaccatctgagtagcttacatatgtaacacatttcaatttggacagtgaaatttgcattgaaaacatctgatctccattt-agactcataaaatacacagttgacaaagtagactcccaaggccaagtgattctaaacatacttaagtgctttctaataacagaatcaaaatttcaaaCCTGCattttaattaataaaaa
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25864211 200 +  99763055 aaaccatctgagtagcttacatatgtaacacatttcaatttggacagtgaaatttgcattgaaaacatctgatctccattt-agactcataaaatacacagttgacaaagtagactcccaaggccaagtgattctaaacatacttaagtgctttctaataacagaatcaaattttcaaacctgcattttaattaataaaaa
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           22815 200 +    551209 aaaccatctgagtagcttacatatgtaacacatttcaatttggacagtgaaatttgcattgaaaacatctgatctccattt-agactcataaaatatacagttgacaaagtagactcccaaggccaagtgattctaaacatacttaagtgctttctaataacagaatcaaattttcaaacctgcattttaattaataaaaa
i gorGor5.CYUI01015853v1       C 0 C 0
s chlSab2.chr26                  4264873 200 -  58131712 aaaccattggggtagcttacatatgtagcacatttcaatttggacaatgaaatttgcattgaaaatatctgatctgcattt-agactcataaactatacagttgacgaagtagactcaaatggccaagttattctaaacatacttaaatgctttccaataatggaatcaagtttttaaacctgcattttaatcaataaaaa
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3992154 200 +   4457520 aaaccatcagggtagcttacatatgtagcacatttcaatatggatgatgaaatttgcattgaaaatatctgatctgcactt-agactcataaaatatacagttgacgaagtagactcacatggccaagttattctaaacatacttaaatgctttctaataatggaatcaagtttctaaacctgcattttaattaataaaaa
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3908992 189 + 158406734 aagccatcagggtagcttacatatgtagcacatttcaatttggac-----aatctgcactgaaaatagccaatctacactt-agactcataaaatacacagttgacaaagtagactcacatagccaaggtattccaaacc----taaatgctttctaataatgaaatc--gtttttaaatatgcattttaattaataaaaa
i calJac3.chr6                 C 0 C 0
s saiBol1.JH378292               2353142 191 +   2682657 AAGCCATCAGGgtagcttacatatgtagcacatttcagtttggac-----aatttgcactgaaaatagctgatctgcactt-agactcatcacatacacagttgacgaagtagactcacatagccaggttattccaaaca----taaatcctttctaataatgaaatcaagtttttaaatctgcattttaattaataaaaa
i saiBol1.JH378292             M 1420 C 0
s cebCap1.NW_016107707v1         1731563 192 +   2086007 aagccatcagggtagctcatatacgtagcacatttcaatttggac-----aatttgcactgaaaatagctgatctgcacttaagactcataaaatacacagttgacgaagtagactcacacagccaagttattccaaaca----taaatgctttctaataatgaaatcaagtttttaaatctgcattttaattaataaaaa
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3413878 191 -   3831555 aagccatcagggtagcttacacatgtagcacatttcaatttggac-----aatttgcagtgaaaacagctgatctgcactt-agactcataaaatacacagttgacgaagtagactcacatagccaagttattccaaaca----taaatgctttctaataatgaaatcaagtttttaaatctgcattttaattaataaaaa
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          125186   0 +    138091 C
e cerAty1.NW_012002601v1         1559014 1830 +   1584492 M
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e macFas5.chr7_KE145676_random     11842  75 +     18337 I

a score=844278.000000
s hg38.chr15_KI270851v1_alt       121802 240 +    263054 TTAAACAGATAAAATATTCAGTGTCTCAGCTATGACGGACAGACTTCAAGTGCTGATCAGCAAACGGTGTTGAGTG-TAGCCAGATGGGCCAGCGCAGGCTACACAGCTGCAGCTCAAACAGCACAGCTGCAGGTCAAACAGGCCAGTCTCTCTGCGCACGGGAACAGTCTGGGC--AAGCAGGAGACGGGGAAAACGGGCACTGCCCTCGTGAGAACAAAGGACCCACAACAGGAACCCTGC
s panTro5.chr15                  9378754 240 +  83230942 ttaaacatataaaatattcagtgtctcagctatgacggacagacttcaagtgctgatcagcaaacggtgctgagtg-tagccagacgggccagcgcagGCTACACAGCTGCAGCTCAAACAGCACAGCTGCAGGTCAAACAGGCCAGTCTCTCTGCGCATGGGAACAGTCTGGGC--AAGCAGGAGACGGGGAAAACGGGCACTGCCCTCGTGAGAACAAAGGACCCACAACAGGAACCCTGC
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25864411 240 +  99763055 ttaaacagataaaatattcagtgtctcagctatgacggacagacttcaagtgctgatcagcaaacggtgttgagtg-tagccagacgggccagcgcagGCTACACAGCTGCAGCTCAAACAGCACAGCTGCAGGTCAAACAGGCCAGTCTCTCTGCGCACGGGAACAGTCTGGGC--AAGCAGGAGACAGGGAAAACGGGCACTGCCCTCGTGAGAACAAAGGACACACAACAGGAACCCTGC
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           23015 240 +    551209 ttaaacagataaaatattcagtgtctcagctatgacggacagacttcaagtgctgatcagcaaacggtgttgagtg-tagccagacgggccagcgcagGCTACAGAGCTGCAGCTCAAACAGCACAGCTGCAGGTCAAACAGGCCAGTCTCTCTGCGCACGGGAACAGTCTGGGC--AAGCAGGAGATGGGGAAAACGGGCACTGCCCTCGTGAGAACAAAGGACCCACAACAGGAACCCTGC
i gorGor5.CYUI01015853v1       C 0 C 0
s chlSab2.chr26                  4265073 239 -  58131712 ttaaacagataaaatactcagtgtctcagctctgatggacacacttcaagtgctgatcagcaaactgtg-tgagtg-cggccagactggccagcacagGCTACACGGCTGCAGCTCAAACAGCACAGCTGCAGCTCAAACAGGCCAGTCTCTCTGCACATGGAAACAGTCTGAGC--AAGCAGGAGATGGGGAAAACGGGCACTGCCCTCATGAGAACGAAGGACCCACAACAGGAACCCTGC
i chlSab2.chr26                C 0 C 0
s manLeu1.NW_012101289v1          125186 218 +    138091 TTAAACAGATACAATAGTCAGTGTCTCAGCTACGATGGACACACTTCAAGTGCTGATCAGCAAACAGTG-TGAGTG-CGGCCAGACCGGCCAGCGCAGCCTA--------------------CACAGCCGCAGCTCAAACAGGCCGGTCTCTCTGCGCAGGGGAACAGTCTGAGC--AGGCAGGAGAC-GGGAAAACAGGCACTGCCTTCTTGAGAATAAAGGACCCACAACAGGAACCCTGC
i manLeu1.NW_012101289v1       C 0 C 0
s colAng1.NW_012115278v1         3992354 239 +   4457520 ttaaacagataaaatattcagtgtctcagctacgatggacacacttcaagtgctgatcagcaaactgtg-tgagtg-cggccagactggccagcgcagGCTACACGGCTGCAGCTCAAACAGCACAGCCGCAGCTCAAACAGGCCGGTCTCTCTGCACATGGAAACAGTCTGAGC--AAGCAGGAGATGGGGAAAACGGGCGCTGTCCTCGTGAGAACAAAGGACCCACAACAGGAACCCTGC
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3909181 193 + 158406734 ttaaacagatgaaatattcagtgtctcagctatcctgaacacacttcaagggctgatcaccaaac--tg-tgagtgccagccagactggcca-----------------------------gcacagCTGCAGCTGAAATAGGCCAGTCTC-----------------TCTCAGCAAAATCAGGAGACAAGGAAAACGGGCACTGCCCTCATGAGAAC-AGGGACCCATAACAAGAACCCTGT
i calJac3.chr6                 C 0 C 0
s saiBol1.JH378292               2353333 194 +   2682657 ttaaacagataaaatattcagtgtctcagctatgcagaacacacttccagtgctgatcagcaaactgtg-tgagcactagtcagactggcca-----------------------------gcacagCTGCAGGTGAAACAGGCCAGTCTC-----------------TCTCAGC--AATCAGGAGACAAGGAAAATGGGCACTGCCCTCATGAGAACAAGGGACCCACAACAAGAACCCTGC
i saiBol1.JH378292             C 0 C 0
s cebCap1.NW_016107707v1         1731755 214 +   2086007 ttacacagataaaatattcagtgtctcagctatgctgaacacacttcaagtgctgatcagcaaactgtg-tgcgtgctagccagactggccagcacagC---------TGCAGCTGAAAATGCACAGCTGCAGGTGAAACAGGCCAGTCTC-----------------TCTCGGC--AATCAGGAGACAAGGAAAACGGGCACTGCCCTCATGAGAACAAGGGGCCCACAACAAGAGCCTTGC
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3414069 214 -   3831555 ttaaacagataaaatattcagtgtctcagctatgctgaacacactttaagtgctgatcagcaaactgtg-tgagtgctagccagactggccagcacagG---------TGCAGCTGAAACAGCACAGCTGCAGGTGAAACAGGCCAGTCTC-----------------TCTCAGC--CATCAGGAGACAAGGAAAATGGGCACTGCCCTCATGAGAACAAGGGACCCACAACAAGAACCCTGC
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e cerAty1.NW_012002601v1         1559014 1830 +   1584492 M
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e macFas5.chr7_KE145676_random     11842  75 +     18337 I

a score=76368.000000
s hg38.chr15_KI270851v1_alt       122042 14 +    263054 ACTCACCCCCTGCC
s panTro5.chr15                  9378994 14 +  83230942 ACTCACCTCCTGCC
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25864651 14 +  99763055 ACTCACCTCCTGCC
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           23255 14 +    551209 ACTCACCCCCTGCC
i gorGor5.CYUI01015853v1       C 0 C 0
s cerAty1.NW_012002601v1         1560844 14 +   1584492 ACTCACCCCCTGCC
i cerAty1.NW_012002601v1       M 1830 C 0
s chlSab2.chr26                  4265312 14 -  58131712 ACTCACCCCCCGCC
i chlSab2.chr26                C 0 C 0
s manLeu1.NW_012101289v1          125404 14 +    138091 ACTCACCCCCTGCC
i manLeu1.NW_012101289v1       C 0 C 0
s colAng1.NW_012115278v1         3992593 14 +   4457520 ACTCACTCCCTGCC
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3909374 14 + 158406734 ACTCACCCACTGCC
i calJac3.chr6                 C 0 I 882
s saiBol1.JH378292               2353527 14 +   2682657 ACTCGCCCACTGCC
i saiBol1.JH378292             C 0 C 0
s cebCap1.NW_016107707v1         1731969 14 +   2086007 ACTCACCCACTGCC
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3414283 14 -   3831555 ACTCACCCACTGCC
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e macNem1.NW_012011934v1         1901343  0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e macFas5.chr7_KE145676_random     11842 75 +     18337 I

a score=2185264.000000
s hg38.chr15_KI270851v1_alt       122056 464 +    263054 AAAG--ACCAACAGCCCCACGAAGCAGCCACTTCAGAAAAGGGAGAGGCATTCAAGAACTTAGAAAAGCACCTCTGGAAAATGCTCACTTTAAAACtttgcatgtaactgtacatttt-aattac-aaggtttttaacatccattttctcatgt-attcttaattaactctgtgaaagtaaacacagcttttattcttactcct-atAGTTACTGTGTTGGAAGTCCACCTATATGAACAAACTGTTGTAACTGAAATTTTCTGAGAACAAATCCCAAGCTCTTTCCATCGACACAAACTATATT--GTTTAGTTCTCTTTATTTCCATTTGTTAAAGACCAGAATGTGTGAAATATGCATTATCAGATTAGAAAAAC-AAAACAAACATCAGAAAAAGGTTTTGCAAAATAGCATTTACTAAAATCTATGACAGAAACTAGCTCT-AAAACTTCCTGTTTCAAAATTTCAC----TG
s panTro5.chr15                  9379008 464 +  83230942 AAAG--ACCAACAGCCCCACGAAGCAGCCACCTCAGAAAAGGGAGAGGCATTCAAGAACTTAGAAAAGCACCTCTGGAAAATGCTCACTTTAAAACtttgcatgtaactgtacatttt-aattac-aaggtttttaacatccattttctcatgt-attcttaattaactctgtgaaagtaaacacagcttttattcttactcct-atAGTTACTGTGTTGGAAGTCCACCTATATGAACAAACTGTTGTAACTGAAATTTTCTGAGAACAAATCCCAAGCTCTTTCCATTGACACAAACTATATT--GTTTAGTTCTCTTTATTTCCATTTGTTAAAGACCAGAATGTGTGAAATATGCATTATCAGATTAGAAAAAC-AAAACAAACATCAGAAAAAGGTTTTGCAAAATAGCATTTACTAAAATCTATGACAGAAACTAGCTCT-AAAACTTCCTGTTTCAAAATTTCAC----TG
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25864665 464 +  99763055 AAAG--ACCAACAGCCCCACGAAGCAGCCACCTCAGAAAAGGGAGAGGCATTCAAGAACTTAGAAAAGCACCTCTGGAAAATGCTCACTTTAAAACTTTGCATGTAACTGTACATTTT-AATTAC-AAGGTTTTTAACATCCATTTTCTCATGT-ATTCTTAATTAACTCTGTGAAAGTAAACACAGCTTTTATTCTTACTCCT-ATAGTTACTGTGTTGGAAGTTCATCTATGTGAACAAGCTGTTGCAACTGAAATTTTCTGAGAACAAATCCCAAGCTCTTTCCATTGACACAAACTATATT--GTTTAGTTCTCTTTATTTCCATTTGTTAAAGACCAGAATGTGTGAAATATGCATTATCACATTAGAAAAAC-AAAACAAACATCAGAAAAAGGTTTTGCAAAATAGCATTTACTAAAATCTATGACAGAAACTAGCTCT-AAAACTTCCTGTTTCAAAATTTCAC----TG
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           23269 464 +    551209 AAAG--AACAACAGCCCCACGAAGCAGCCACCTCAGAAAAGGGAGAGGCATTCAAGAACTTAGAAAAGCACCTCTGGAAAATGCTCACTTTAAAACtttgcatgtaactgtacatttt-aattac-aaggtttttaacatccattttctcatgt-attcttaattaactctgtgaaagtaaacacggcttttattcttactcct-atAGTTACTGTGTTGGAAGTCCACCTATATGAACAAACTGTTGTAACTGAAATTTTCTGAGAACAAATCCCAAGCTCTTTCCATTAACACAAACTATATT--GTTTAGTTCTCTTTATTTCCATTTGTTAAAGACCAGAATGTGTGAAATATGCATTATCAGATTAGAAAAAC-AAAACAAACATCAGAAAAAGGTTTTGCAAAATAGCATTTACTAAAATCTATGACAGAAACTAGCTCT-AAAACTTCCTGTTTCAAAATTTCAC----TG
i gorGor5.CYUI01015853v1       C 0 C 0
s cerAty1.NW_012002601v1         1560858 463 +   1584492 AAAGACACCAACAG-GCCACGACGCAGCCTCCTCAGGACAGGCAGAGGCATTCAAGAACTTAGAAAAGCACCTCTGGAAAACACTCACTTGAAAACTTTGCATGTAACTTTACATTTT-AATTAC-AAGG-TTTTAACATCCATTTTCTCATGT-ATTCATAATGAACTCTGGGAAAGGAAACACAGCTTTTATTCTTACTCTTCAGAGTTACTGTGGTGGAAGTTCCCCTATGTGAACAAGCTGTTGCAACTGAAATTTTCAGAGAACAAATCCCAAGCTCTTTCCATTAACACAAACTATATTAAGTTTAGTTCTCT-AATTTCCACTGGTTAAAGACCAGAATATGTGAAATATGCATTATCAGATTAG-AAAAC-AAAACACACATCAGAAAAACTTTCTTCAAAAGAGCATTTACTAAAATCTATGATAGAAACTAGCTCT-AAAACATCCTGTTTCAAAATTTCAC------
i cerAty1.NW_012002601v1       C 0 C 0
s chlSab2.chr26                  4265326 460 -  58131712 AAAGACACCAACAG-CCCATGACACAGCCT---CAGAAAACGGAGAGGCATTCAAGAACTTAGAAAAGCACCTCTGGAAAATGCTCACTTTAAAACCTTGCATGTAACCTTACATTTT-AATTAC-AAAGTTTTTAATATCCATGTTCTCTTTT-ACTCTTAATGAACTCTGTGAAAGTAAACACAGCTTTTATTCTTACTCCT-ATAGTCACTGTGTTGGAAGTTCATCTATGCGAGCAAGCTGTTGCAACTGAAATCTTCTGAGAACAAATCCCAAGATCTTTCCATTAACACAAACTATATTGAGTT---CTCTTT--ACTTCCATTTGTTAAAGACCAGAATGTGTGAAATATGCATTATCAGATTAGAAAAAC-AAAACAAACATCAGAAAAACGTTTTTCAAAATAGCATTTACCAAAATCTATGACAGAAACTAGCTCTAAAAACTTCCCGTTTCAAAATTCCACTG----
i chlSab2.chr26                C 0 C 0
s manLeu1.NW_012101289v1          125418 463 +    138091 AAAGACACCAACAG-GCCACGACGCAGCCTCCGCAGGACAGGCAGAGGCATTCAAGAACTTAGAAAAGCACCTCTGGAAAACGCTCACTTGAAAACTTTGCACGTAACTTTACATTTT-AATTAC-AAGG-TTTTAACATCCATTTTCTCATGT-ATTCATAATGAACTCTGGGAAAGGAAACACAGCTTTTATTCTTACTCTTAAGAGTTACTGTGGTGGAAGTTCCCCTATGTGAACAAGCTGTTGCAACTGAAATTTTCAGAGAACAAATCCCAAGCTCTTTCCATTAACACAAACTATATTAAGTTTAGTTCTCT-AATTTCCACTGGTTAAAGACCAGAATATGTGAAATATGCATTATCAGATTAG-AAAAC-AAAACACACATCAGAAAAACTTTCTTCAAAAGAGCATTTACTAAAATCTATGATAGAAACTAGCTCT-AAAACATCCTGTTTCAAAATTTCAC------
i manLeu1.NW_012101289v1       C 0 C 0
s colAng1.NW_012115278v1         3992607 464 +   4457520 AAAGACACCAACAG-CCCATGACGCAGCCT---CAGAAAATGGAGAGGCATTCAAGAACTTAGGAAAGCACCTCTGGAAAATGCTCACTTTAAAACTTTGCATGTAACCTTACATTTT-AATCAC-AAAGTTGTTAACATCCATGTTCTCCTTT-ATTCTTAATGAACTCTGTGAAAGTAAACACAGCTTTTATTCTTACTCCT-ATAGTCACTGTGTTGGAAGTTCATCTATGTGAGCAAGCTGTTGCAACTGAAATTTTCTGAAAACAAATCCCAAGCTCTTTCCATTAACACAAACTATATTAAGTTTAGTTCTCTTTATTTCCATTTGTTAAAGACCAGAATGTGTGAAATATGCATTATCAGATTAGAAAAAC-AAAACAAACATCAGAAAAACGTTTTTCAAAATAGCATTTACTAAAATCTATGACAGAAACTAGCTCT-AAAACTTCCTATTTCAAAATTTCAC--TG--
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3910270 464 + 158406734 AAAGACA-CTTCAG-CCCATGACACAGGCTCCTCAAAAAAGGGAGAGGCATTCAAGAAC-TAGTAAAGCACCTCTGGAAGATACTCACTTTAAAACTTTGCATATAACTTTACATTTTAAATTACGAAAGTTTTGAACATCAATTTTCTCATTTGATTCTTAATTAACTCTGCAAAAGT--ACACAGCTTTTATTCTTACTCCC-ATAGTTAGTGCGTTGGAAGTTCACTTGTGTGAATGAGCCACTGCAAAGAAAATTTTCTGAGAACAAATCCCAAGCTCCTTCCATTAACACCAACTATAGTAAGCTGAGTTTT---TATTTCCATTTGTTTAAGACCAGAATGTGTGAAATATACATCATTAGATTACAAAAACAAAAACAAACATCAGGAAAATATTTTTCAAAACAGCATTTACTAAAATCTATGATAGAAACTAGCTCT-AAAACTTCTTGTTTCAAAATTGTAC----TG
i calJac3.chr6                 I 882 C 0
s saiBol1.JH378292               2353541 464 +   2682657 AAAGACACCTTCAG-CCCATGACACAGCCTCCTCAAAAGAGGGAGAGGCATTCAAGAACGTAGTAAAGCGCCTCTGGAAGATACTCACTTTAAAACTTTGCATGTAACTTCACATTTT-AATTAC-CAAGTTTTGAACATCCATTTTCTCATTTGATTCTTAATTAACTCTGCAAAAGT--ACACAGCTTTTATTCTTACTCCC-ATAGTTAATGTGTTAGAAGTTCATTTGTGTGAATGAGCCATTGCAAAGAAAATTTTCTGAGAACAAATCCCAAGCTCCTTCCATTAACACCAACTATAGTAAGCTGAGTTTT---TATTTCCATTTGTTTAAGACCAGAATGTGTGAAATATGCATCATTAGATTACAAAAACAAAAACAAACATCAGGAAAGTATTTTTCAAAACAGCATTTACTAAAATCTATGATAGAAACTAGCTCT-AAAACTTCCTGTTTCAAAATTTTAC----TG
i saiBol1.JH378292             C 0 C 0
s cebCap1.NW_016107707v1         1731983 464 +   2086007 AAAGACACCTTCAG-CCCATGAGACAGTCTCCTCAAAAAAGGGAGAGGCATTCAAGAACTTAGTAAAGCACCTCTAGAAGATACTCACTTTAAAACtttgcatataactttacatttt-aattac-aaagttttgaacatccattttctcatttgattcttaattaactctgcaaaagt--acacagCTTTTATTCTTACTCAC-ACAGTTAATGCGTTGGAAGTTCACTTGTGTGAACGAGCCATTGCAAAGAAAATTTTCTGAGAACAAATCCCAAGCTCCTTCCATTAACACCAACTATAGTAAGCTGAGTTTT---TATTTCCATTTGTTTAAGACCACAATGTGTGAACTATGCATCATTAGATTACAAAAACAAAAACAAACATCAGGAAAGTATTTTTCGAAACAGCGTTTACTAAAATCTATGATAGAAACTAGCTCT-AAAACTTCCTGTTTCAAAATTTTAC----TG
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3414297 464 -   3831555 AAAGACACCTTCAG-CCCATGACACAGCCTCCTCAAAAAAGGGAGAGGCATTCAAGAACTTAGTAAAGCACCTCTGGAAGATACTCACTTTAAAACGTTGCATATAACTTTACATTTT-AATGAC-AAAGTTTTGAACATTCATTTTCTCATTCGATTCTTAATTAACTCTGCAAAAGT--ACACAGCTTTTATTCTTACTCCC-ATAGTTAGTGCGTTGGAAGTTCACTTGTGTGAATGAGCCATTGCAAAGAAAATTTTCTGAGAACAAATCCCAAGCTCCTTCCATTAACACCAACTATAGTAAGCTGAGTTTT---TATTTCCATTTGTTTAAGACCAGAATGTGTGAAATATGCATCATTAGATTACAAAAACAAAAACAAACATCAGGAAAATATTTTTCAAAACAGCATTTACTAAAATCTATGATAGAAACTAGCTCG-AAAACTTCCTGTTTCAAAATCTTAC----TG
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e macFas5.chr7_KE145676_random     11842  75 +     18337 I

a score=126733.000000
s hg38.chr15_KI270851v1_alt       122520 21 +    263054 TGTGTGCACTAAGTTAGTTTT
s panTro5.chr15                  9379472 21 +  83230942 TGTGTCCACTAAGTTAGTTTT
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25865129 21 +  99763055 TGTGTCCACTAAGTTAGTTTT
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           23733 17 +    551209 TGTGTCCACTA----AGTTTT
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     11917 21 +     18337 tGTGTCCACTAAGTTCATTTT
i macFas5.chr7_KE145676_random I 75 C 0
s cerAty1.NW_012002601v1         1561321 21 +   1584492 TGTGTCCACTAAGTTCATTTT
i cerAty1.NW_012002601v1       C 0 C 0
s chlSab2.chr26                  4265786 21 -  58131712 TGTGTCCACTAAGTTCGTTTT
i chlSab2.chr26                C 0 C 0
s manLeu1.NW_012101289v1          125881 21 +    138091 TGTGTCCACTAAGTTCATTTT
i manLeu1.NW_012101289v1       C 0 C 0
s colAng1.NW_012115278v1         3993071 21 +   4457520 TGTGTCCACTAAGTTCGTTTT
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3910734 21 + 158406734 TGTGTCCACTAAGTTCGTTTT
i calJac3.chr6                 C 0 C 0
s saiBol1.JH378292               2354005 21 +   2682657 TGTGTCCACTAGGTTCGTTTT
i saiBol1.JH378292             C 0 M 1550
s cebCap1.NW_016107707v1         1732447 21 +   2086007 TGTGTCCACTAAGTTCGTTTT
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3414761 21 -   3831555 TGTGTCCACTAAGTTGGTTTT
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e macNem1.NW_012011934v1         1901343  0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=149196.000000
s hg38.chr15_KI270851v1_alt       122541 68 +    263054 GCTGGCTGTGGACAGCAGGCCCACCCCATGCCGCGGGcccaccccacgccgcgggcccaccccacgcc-----
s panTro5.chr15                  9379493 50 +  83230942 TCTGGCTGTGGACAGCAGGCCCACCCCAT------------------GCCGCGGGcccaccccacgcc-----
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25865150 68 +  99763055 TCTGGCTGTGGACAGCAGGcccaccccatgccgcaggcccaccccacgccgcaggcccaccccacgcc-----
i panPan2.chr15                C 0 n 0
s gorGor5.CYUI01015853v1           23750 50 +    551209 TCTGGCTGTGGACAGCAGGCCCACCCCAT------------------GCCGCGGGcccaccccacgcc-----
i gorGor5.CYUI01015853v1       C 0 I 1
s macFas5.chr7_KE145676_random     11938 50 +     18337 TCTGGCTGTGGACGGCAGGCCCACTCCAC------------------GCTGTAGGCCCACCCCACGCT-----
i macFas5.chr7_KE145676_random C 0 C 0
s cerAty1.NW_012002601v1         1561342 32 +   1584492 CCTGGCTGTGGACGGC------------------------------------AGGCCCACCCCACGCT-----
i cerAty1.NW_012002601v1       C 0 C 0
s chlSab2.chr26                  4265807 32 -  58131712 TCTGGCTGTGGACAGC------------------------------------AGGGCCACCCCACGCC-----
i chlSab2.chr26                C 0 C 0
s manLeu1.NW_012101289v1          125902 32 +    138091 CCTGGCTGTGGACGGC------------------------------------AGGCCCACCCCACGCT-----
i manLeu1.NW_012101289v1       C 0 C 0
s colAng1.NW_012115278v1         3993092 32 +   4457520 TCTAGCTGTGGACAGC------------------------------------AGGGCCACCCCACGCC-----
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3910755 55 + 158406734 TCTGGCTGTGGACAGCAGGCCCACCCCAT------------------GCCACAGGCCCAGCCCACACTGCAGG
i calJac3.chr6                 C 0 C 0
s cebCap1.NW_016107707v1         1732468 55 +   2086007 TCTGGCTGTGGACAGCCGGCCCACCCCAC------------------ACCACAGGCCCAGCCCACACTGCAGG
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3414782 55 -   3831555 TCTGGCTGTGGACAGCAGGCCCACCCCAT------------------GCCACAGGCCCAGCCCACGCTGCAGG
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e macNem1.NW_012011934v1         1901343  0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2354026 1550 +   2682657 M

a score=41811.000000
s hg38.chr15_KI270851v1_alt       122609 36 +    263054 gcgggcccaccccacgccacgggcccaccccacgcc
s panTro5.chr15                  9379543 36 +  83230942 gcaggcccaccccacgccacaggcccaccccacgcc
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25679153 36 +  99763055 gcaggcccaccccacgccacaggcccaccccacgcc
i panPan2.chr15                n 0 n 0
s gorGor5.CYUI01015853v1           23801 17 +    551209 -------------------caggcccaccccacgcc
i gorGor5.CYUI01015853v1       I 1 C 0
s macFas5.chr7_KE145676_random     11988 36 +     18337 GCAGGCTCACCCCACGCTGCAGGCCCACCCCACGCT
i macFas5.chr7_KE145676_random C 0 C 0
s cerAty1.NW_012002601v1         1561374 36 +   1584492 GCAGGCCCACCCCATGCTGCAGGCCCACCCCACGCT
i cerAty1.NW_012002601v1       C 0 C 0
s chlSab2.chr26                  4265839  8 -  58131712 ACAGACCC----------------------------
i chlSab2.chr26                C 0 C 0
s manLeu1.NW_012101289v1          125934 36 +    138091 GCAGGCCCACCCCACGCTGCAGGCCCACCCCACGCT
i manLeu1.NW_012101289v1       C 0 C 0
s colAng1.NW_012115278v1         3993124  8 +   4457520 CCAGACCC----------------------------
i colAng1.NW_012115278v1       C 0 C 0
e aotNan1.NW_018503298v1         3414837  0 -   3831555 C
e cebCap1.NW_016107707v1         1732523  0 +   2086007 C
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e macNem1.NW_012011934v1         1901343  0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2354026 1550 +   2682657 M
e calJac3.chr6                   3910810  0 + 158406734 C

a score=355644.000000
s hg38.chr15_KI270851v1_alt       122645 71 +    263054 acAGACCCACCATGGCCCCATGAACAGGCCAGCTGAGAGCTGCAGCCACTGCCCAGGGCTCCCTGGTCTGT
s panTro5.chr15                  9379579 71 +  83230942 acAGACCCACCATGGCCCCATGAACAGGCCAGCTGAGAGCTGCAGCCACTGCCCAGGGCTCCCTGCTCTGT
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25865218 71 +  99763055 acAGACCCACCGTGGCCCCATGAACAGGCCAGCTGAGAGCTGCAGCCACTGCCCAGGGCTCCCTGCTCTGT
i panPan2.chr15                n 0 C 0
s gorGor5.CYUI01015853v1           23818 71 +    551209 acAGACCCACCATGGCCCCATGAACAGGTCAGCTGAGAGCTGCAGCCACTGCCCAGGGCTCCCTGCTCTGT
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     12024 71 +     18337 GCAGACCTACCATGGCCCCATGAACAGGCCAGCTGAGAGCTGGGGCCACTGCCCAGGGCTCCCTGCTCTGT
i macFas5.chr7_KE145676_random C 0 C 0
s cerAty1.NW_012002601v1         1561410 71 +   1584492 GCAGACCTACCATGGCCCCATGAACAGGCCAGCTGAGAGCTGGGGCCACTGCCCAGGGCTCCCTGCTCTGT
i cerAty1.NW_012002601v1       C 0 I 819
s chlSab2.chr26                  4265847 63 -  58131712 --------ACCACGGCCCCATGACCAGGCCGGCTGAGAGCTGCGGCCACTGCCCAGGGCTCCCTGCTCTGT
i chlSab2.chr26                C 0 C 0
s manLeu1.NW_012101289v1          125970 71 +    138091 GTAGACCTACCATGGCCCCATGAACAGGCCAGCTGAGAGCTGGGGCCACTGCCCAGGGCTCCCTGCTCTGT
i manLeu1.NW_012101289v1       C 0 C 0
s colAng1.NW_012115278v1         3993132 63 +   4457520 --------ACCATGGCCCCATGGCCAGGCCAGCTGAGAGCTGCAGCCACTGCCCAGGGCTCCCTGCTCTGT
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3910810 66 + 158406734 -----CCCACCATGCCTCCATGAACAGGCCAGCTGAGAGCCGCAGCCACTGCCCAGGGCCCACTGCTCTGT
i calJac3.chr6                 C 0 C 0
s cebCap1.NW_016107707v1         1732523 64 +   2086007 -----CCCACCATGCCCCCATG--CAGGCTAGCTGAGAGCAACAGCCACTGCCCAGGGCCCCCGGCTCTGT
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3414837 66 -   3831555 -----CCCACCACGCCCCCATGAACAGTCCAGCTGAGAGCCGCAGCCACTGCCCAGGGCCCCCTGCTCTGT
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e macNem1.NW_012011934v1         1901343  0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2354026 1550 +   2682657 M

a score=288549.000000
s hg38.chr15_KI270851v1_alt       122716 68 +    263054 ACTCGGCTGCCTGACCCAAGCTGCCAGGGCTCTGCTTTCTCTATGTGTAGAAACAAAAACCAGGAGCA
s panTro5.chr15                  9379650 68 +  83230942 GCTCGGCTGCCTGACCCAAGCTGCCAGGGCTCTGCTTTCTCTATGTGTAGAAACAAAAACCAGGAGCA
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25865289 68 +  99763055 GCTCGGCTGCCTGACCCAAGCTGCCAGGGCTCTGCTTTCTCTATGTGTAGAAACAAAAACCAGGAGCA
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           23889 68 +    551209 ACTCGGCTGCCTGACCCAAGCTGCCAGGGCTCTGCTTTCTCTATGTGTAGAAACAAAAACCAGGAGCA
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     12095 68 +     18337 GCTCGGCTGCCTGATCCAACCTGCCAAGGCCCTGCTTTCTCTATGTGTAGAAACAAAAATCAGGAGCA
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4265910 68 -  58131712 GCTCGGCCGCCTGATCCAACCTGCCAGTTCTTTGCTTTCTCTATGTGTAGAAACTAAAATCAGGAGCC
i chlSab2.chr26                C 0 C 0
s manLeu1.NW_012101289v1          126041 68 +    138091 GCTCGGCTGCCTGATCCAACCTGCCAAGGCTCTGCTTTCTCTATGTGTAGAAACAAAAATCAGGAGCA
i manLeu1.NW_012101289v1       C 0 I 241
s colAng1.NW_012115278v1         3993195 68 +   4457520 GCTCGGCCGCCTGATCCAACCTGCCAGCGGTTTGCTTTCTCTGTGTGTAGAAACTAAAATCAGGAGCC
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3910876 68 + 158406734 GCTCAGCTGCCTGAGCCAACCTGCCAGGGCTCTGCTTTCTCCATGTGTAGAAACTAAAACCAGGAACC
i calJac3.chr6                 C 0 C 0
s cebCap1.NW_016107707v1         1732587 68 +   2086007 GCTCAGCTGCCCGAGCCAACCTGCCAGGGCTCTGCTTTCTCCACATGTAGAAACTAAAGCCAGGAACC
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3414903 68 -   3831555 GCTAGGCTGCCCGAGCCAACGTGCCAGGGCTCTGCTTTCTCCATGTGCAGAAACTAAAACCAGGAACC
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e cerAty1.NW_012002601v1         1561481 819 +   1584492 I
e macNem1.NW_012011934v1         1901343  0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2354026 1550 +   2682657 M

a score=2908708.000000
s hg38.chr15_KI270851v1_alt       122784 891 +    263054 TCAGTTGACGAAAAGC-AGATTTTTATTGAAC-AGAGGTATAAATGTGTTTCATTTTCTAATAAATCTCTTTCACAAATCACCTTGCTGTTTCGCTCTTCTTGAATGATCATTTTTACACAACACTGTCTGACTGTTTTGGCTTCTGCCAAGGTTAGCGTCTGTTCACAGGCTGAGTCTGACTTCCTCCTCCCACCTCCTCCTAGTCTGGCCTTCCAAAATAATGCTCACCATTCTATCACATTGACTTCAGTTTTGAAAAGAAAAGTTATCTTACAAAGTAGTAGGTACAACTCTGTAATATGTAAAGTGAGGCAATGATAGAACCAGTTTTAAaaataacctt-ccatgatgattttcattcgcacctacctgcttattagtaagaatctttttacatgtttaccgcacgccccaatttctcttctgtgaaAAACTTCTGAGTATCATCACACCCTCCAACTTCTCCTCTCACCTATATTGAGAAGGGTCTGCTCTTTATCCTAACATCTATACTAGGTAATTTTCAGAATATTCCTTCAATCATCAAAC-AAATTTTTGAGACCCTTGCGCTAGATTTCACTATCTTAATATGAAAACCAATAATCACCTATtaaaatacaatacaggccgggaacagtggctaacacctgtaatcccaacattttgagaggccaaggcaggtgggtcac-ctgacgtcaggaatttgagaccagcctg-accaatatggtaaaaccccatctctactaaaaatacacaaatcagccaggtgtggttgcagacgcctgtagtcccagctactcgggaggctgaggcaggagaatagcttgaacccaggaggcgggggttgcagtgagc-caagatcgtgacactgc-actccagcctggacgatag
s panTro5.chr15                  9379718 888 +  83230942 TCAGTTGACAAAAAGC-AGATTTTTATTGAAC-AGAGGTATAAATGTGTTTCATTTCCTAATAAATCTCCTTCACAAATCACCTTGCTGTTTCGCTCTTCTTGAATGATCATTTTTAGACAACACTGTCTGACCGTTTTGGCTTCTGCCAAGGTTAGCCTCTGTTCACAGGCTGAGTCTCACT---TCTTCCCACCTCCTCCTAGTCGGGCCTTCCAAAATAATGCTCACCATTCTATCACATTGACTTCAGTTTTGAAAAGAAAAGTTATCTTACAAAGTAGTATGTATAACTCTGTAATATATAAAGTGAGGCAATGATACAATCAGTTTTAAaaataacctt-ccatgatgattttcatttgcatccacctgcttattagtaagaatctttttacatgtttactgcacaccccaatttctcttctgtgaaAAACTTCTGAGTATCATCATACCCTCCAACTTCTCCTCTCACCTATATTGAGAAGGGTCTGCTCTTTATCCTAACATCTATACTAGGTAATTTTCAGAATATTCCTTCAATCACCAAAC-AAATTTTTGAGATCCTTGTGCTAGATTTCACTATCTTAATATGAAAACCAATAATCACCTATtaaaatacaatacaggccaggcacagtggctaacacctgtaatcccaacattttgagaggccaaggcaggtgggtcac-ctaacgtcaggaatttgagaccagcctg-acgaatatggtcaaaccccatctctactaaaaatacaaaaatcagccaggtgtggttgcagacgcctgtagtcccagctactcgggaggctgaggcaggagaatagcttgaacccaggaggcgggggttgcagtgagc-caagatcgtgacactgc-actccagcctggacgatag
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25865357 891 +  99763055 TCAGTTGACAAAAAGC-AGATTTTTATTGAAC-AGAGGTATAAATGTGTTTCATTTCCTAATAAATCTCCTTCACAAATCACCTTGCTGTTTCGCTCTTCTTGAATGATCATTTTTAGACAACACTGTCTGACCGTTTTGGCTTCTGCCAAGGTTAGCCTCTGTTCACAGGCTGAGTCTGACTTCTTCTTCCCACCTCCTCCTAGTCTGGCCTTCCAAAATAATGCTCACCATTCTATCACATTGACTTCAGTTTTGAAAAGAAAAGTTATCTTACAAAGTAGTATGTATAACTCTGTAATATATAAAGTGAGGCAATGATACAATCAGTTTTAAaaataacctt-ccatgatgattttcatttgcatccacctgcttattagtaagaatctttttacatgtttactgcacaccccaatttctcttctgtgaaAAACTTCTGAGTATCATCATACCCTCCAACTTCTCCTCTCACCTATATTGAGAAGGGTCTGCTCTTTATCCTAACATCTATACTAGGTAATTTTCAGAATATTCCTTCAATCACCAAAC-AAATTTTTGAGATCCTTGCGCTAGATTTCACTATCTTAATATGAAAACCAATAATCACCTATTAAAATACAATACAggccaggcacagtggctaacacctgtaatcccaacattttgagaggccaaggcaggtgggtcac-ctgacgtcaggaatttgagaccagcctg-acgaatatggtcaaaccccatctctactaaaaatacaaaaatcagccaggtgtggttgcagacgcctgtagtcccagctactcgggaggctgaggcaggagaatagcttgaacccaggaggcgggggttgcagtgagc-caagatcgtgacactgc-actccagcctggacgatag
i panPan2.chr15                C 0 n 0
s gorGor5.CYUI01015853v1           23957 890 +    551209 TCAGTTGACAAAAAGC-AGATTTTTATTGAAC-AGAGGTGTAAATGTGTTTCATTTTCTAATAAATCTCTTTCACAAATCACTTTGCTGTTTCACTCTTCTTGAATGATCATTTTTAGACAACACTGTCTGACTGTTTTGGCTTCTGCCAAGGTTAGCCTCTGTTCACAGGCTGAGTCTGACTTCTTCCTCCCACCTCCTCCTAGTCTGGCCTTCCAAAATAATGCTCACCATTCTATCACATTGACTTCAGTTTTGAAAAGAAAAGTTATCTTACAAAGTAGTATGTATAACTCTGTAATATATAAGGTGAGGCAATGATACAATCAGTTTTAAaaataacctt-ccatgatgattttcatttgca-ccacctgcttattagtaagaatctttttacatgtttactgcacaccccaatttctcttctgtgaaAAACTTCTGAGTATCATCATACCCTCCAACTTCTCCTCTCACCTATATTGAGAAGGGTCTGCTCTTTATCCTAACATCTATACTAGGTAATTTTCAGAATATTCCTTCACTCACCAAAC-AAATTTTTGAGATCCTTGTGCTAGATTTCACTATCTTAATATGAAAACCAATAATCACCTATtaaaatacaatacaggccaggcacagtggctaacacctgtaatcccaacattttgagaggccaaggcaggtgggtcac-ctgacgtcaggaatttgagaccagcctg-accagtatggtaaaacctcatctctactaaaaatacaaaaatcagccaggtgtggttgcagatgcctgtcgtcccagctactcgggaggctgaggcaggagaatagcttgaacccaggaggcgggggttgcagtgagc-caagatcgtgacactgc-actccagcctggacgatag
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     12163 885 +     18337 CGAGTTTACAAACTGC-AGACTTTTATGAAAT-AGAGGTATAAATGTGTTTCATTGTCTAATAAATCTCTCTCACAAATCACCTTGCTCTTCCGCTCCTCTTGAGCGATCATGTTTACACAACACTGCCTGACCGTTTTGGCTTCTGCCAAGGTTAGCCTCTGTCCACAGGCTGAGTCTGACT---TCTTCCCACCTCCTCCTAGTCCAGCCTTCCAGAACAATGCTCACCAGTATTTCACATGGACTTTAGTTTTGAAAAGAAAAATTACCTTACAAAGTAGTATGTATAACTCTGTAGTATATAAAGTGAGGCAATGATAGAACCACTTTTAaaaataacctt-ccatgatgatttttatttgcatccacgtgcttattactaagaatctttttacatgtttactgcacacctcaatttctcttctgtgaaaaacttttgaatatcATCATACCCTCCAAATTCTCCTCTCACCTATGTTGAAAAAGGTCTGCTCTTTATCTTAACATCTGTACTAGGTAATTTTCAGAATATTCCTTCCATCACC-----AGATTTTTGAGATCCTTGTGCTGGATTTCACTATCTTAATATGAAAACCAATAATCACCTATTAAAACACAATACAggccaggcacagtggctaacgcctgtaatcccaacattttgagaggccaacgcaggtggatcac-ctgaggtcaggagttggaggcgagcctgaaccaatatgctgaaaacgtgtctctactaaaaatacaaaaatcagccaggtgtggttgcagattcctgtagtcccagctactcaggagactgaggcaggagaatagcttgaacccaggaggcagaggttgcagtgagc-caagatcgtgacactgc-actccagcctggacaacag
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4265978 888 -  58131712 CAAGTTTACAAAAAGC-AGATTTTTATTAAATAAGAGGTACAAATGTGTTTCATTTTCTAATAAATCTCTTTCACAAATCATCTTGCTTTTCTGCTCTTCTTGAGTGATCACTTTTACACAACACTGTCTGACCCTTTTGGCTTCTGCCAAGGTTAGCCTCTGTTCACAGGCTGAGTCTGACT---TCTTCCCACCTCCTCCTAGTCTGGCCTTACAAAACAATGCTCATCATTCTTTCACACTGACTTTAGTTTTGAAAAGAAAAGTTATCTTACACAGTAGTATGTATAACTCTGTAATATGTAAAGTGAGGCAATGATAGAACCAGTTTTAaaaataacctt-ccatgatgattttcatttgcatccacctgcttattactaagaatcttttcacatgtttactgcacaccccaatttctcttctgtgaaaAACTTTTGAGTATCATCATACCCTCCAACTTCTCCTCTCACCTGTGTTGAAAAGGGTCTGCTCTTTATCCTAACGTCTGTACTAGGTAATTTTCAGAATATTCCCTCCATCACCAAAT-AAATTTTTGAGATCCTTGTG-TAGATTTCAAGATCTTAATATGAAAACCAATAATCACCTACtaaaatacaatacaggtcaggcacagtggctaacacctgtaatcccaacactttcagaggccaaggcaggagaatcac-ctaaggtcaggagtttgagaccagcctg-accaatatggtgaaaccccgtctctgctacaaatacaaaaatcagccaggtgtggttgcggacgcctgtagtcccagctacttgggaggctgaggcaggagaagtgcttgaacccaggaggcagaggttgcagtgagc-caagatcatgatactgc-aatccagcctgggtgatag
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3993263 887 +   4457520 CAAGTTTACAAAA-GC-AGATTTTTATTCAAT-AGAGGTACAAATGTGTTTCATTTTCTAATAAATCTCTTTCACAAATGATCTTGCTTTTCCGCTCTTCTTGAGTGATCATTTTTACACAACACTGTCTGACTCTTTTGGCTTCTGCCAAAGTTAGCCTCTGTTCACAGGCTGAGTCTGACT---TCTTCCCACCTCCTCCTAGTCTGGCCTTACAAAACAATGCTCATCATTCTTTCACACTGACTTTAGTTTTGAAAAGAAAAGTTATCTTACACAGTAGTATGTATAACGCTGTAATATATAAAGTGAGGCAATGATAGAACCAGTTTTAAAAATAACCTtcccatgatga-tttcatttgcatccacctgcttattactaagaatcttttcacatgtttactgcacaccccaatttctcttctgtgaaaAACTTTTGAGTACCATCATACCCTCCAACTTCTCCTCTCACCTATGTTGAAAAGGGTCTGCTCTTTATCCTAACATCTGCACTAGGTAATTTTCAGAATATTCCCTCCATCACCAAAC-ACATTTTTGAGATCCTTGTGACAGATTTCATGATCTTAATATGAAAACCAATAATCACCTACtaaaatacaatacaggtcaggcacagtggctaatgcctgtaatcccaacactctgagaggccaaaacaggtggatcac-ctgaggtcaggagtttgagagcagcctg-accaatatggtgaaaccctgtctctactaaaaatacaaaaatcagccaggtgtggttgcggacgcctgtagtcccagctactcgggaggctgacgcaggagaagtgcttgaacccaggaggcagaggttgcagtgagc-caagatcatgacactgc-actccagcctgggtgatag
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3910944 800 + 158406734 CGCGTTTACAAAAAGCAAGATTTTTATTAAAC-AGAGGTACAAATATGTTTCCTTTTCTAATAAATCTCTTTCACGAATCACCTTGCTTTTTTGCTTTTCTGGAATGATCATTTTTAGACAACACTGTCTGACCG-TTTGGCCTCTGCCAACAGGAGCCTCTGTTCACAGGCTGAGTCT-----------------------------AGCCTTCTAAAACAATGCTGACGATTCCTTCACATTGACTTTAGTTTTGA------------------AAAGTAGTATGTATAACTCTATAATACATAAAG-----------------------------TAACCTTACCATAA------------GTGTCCACCAGCTTATTAATAAGAATCTTTGTACACATTTGCTG--CACCCCAATTTCTCTTCTGTGAAAATCTCTGGAATATCATCATACCCTCCAACCTTTCCTCTCACCTATATTTAAAAGGGTCTGTTCTTTATCCTAAAATCTATACTAGGTAATTTTCAGAATATTTCTTCAATAACCAAAC-AAATTTATGAGATCCTTGTGCTAGATTTCACTATCTTAATATG-AAACCAATAATTATGAATTAAAATACAATAAAggccggacacagtggcaaatgcctgtaatgtcaccaccttgaggggccaaggcaggt-gatcac-ctgaggtcaggagttcgagaccagccaa-accaatatggtaaaaccctctctctactaaaaatacaaaaatcagccaggtatggctgcggatgcctgtagacccagctactccggaggctgaggcaagagaattgcttgaacccagtaggcagaggttacagtgagcacaagatcatgtcactac-actccggcctgg-tgacag
i calJac3.chr6                 C 0 C 0
s cebCap1.NW_016107707v1         1732655 862 +   2086007 CGTGTTTACGAAAAGCAAGATTTTTATTAAAC-AGACGTACAAATATGTTTCCTTTTCTAATAAATTTCTTTCACGAATCACCTTGCTTTTTTGCTTTTCTGGAATGACCATTTTTAGACGACACTGTCTGACCG-TTTGGCCTCTGCCAACATGAGCCTCTGTTCACAGGTTGAGTCT-----------------------------GGCCTTCTAAAACAATATTCACAATTCTTTCACATTGGCTTTAGTTTTGAAAAGAAAAGTTATCTTACAAAGTAGTCTGTATAACTCTGTAATACATAAAGTATGGCCATGATACAACCAGTTTTAAAAATAACCTTACCATGA-GATTTTTATTTGTATCCACCTGCTTATTAATCAGAATCTTTGTACATGTTTGCTGCACACCCCAATTTCTCTTCTGTGAAAATCTTTTGAATATCATCATACCCCCCAACCTCTCCTCTCACCTATATTTAAAAGGGTCTGTTCTTTATCCTAAAATCTACACTACGTAATTTTCAGAATATTTCTTCAATAACCAAACAAAATTTTTGAGATCCTTGTGCTAGATTTCACTATCTGAATATGAAAACCaaaaattatgaattaaaatacaatacaggccagacacagtggctaatgcctggaatgcctacactttgagaggccaaggcaggtggatcac-ctgaggtcaggagttcgagaccagccaa-accaatatggtaaaaacttgtctctactaaaaatacaaaaatcagccaggtatagctgtggatgcctgtagacccagctactccggaggctgaagcaagagaattgcttgaacccagtaggcggaggttacagtgagc-caagatcatgtcactac-attccggcctgg-cgacag
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3414971 847 -   3831555 TGCGTTTACAAAAAGCAAGATTTTTATTAAAC-AGAGGTACAAATACGTTTCCTTTTCTAATAAATCTCGTTCATGAATCACCTTGCTTTTTTGCTTTTCTGTAATGATCATTTTTAGACAACACTGTCTGACCG-TTTGGCCTCTGCCAACGTGAGCCTCTGTTCACAGGCTGAGTCT-----------------------------GGCCTTCTAAAACAATGCTCACAATTCTTTCACATTGGCTTTAGTTTTGAAAAGAAAAGTTATCTTACAAAGTAGTATGTATAACTCTGTAATACATAAAGTATGGCAATGATACAACCAGTTTTAAAAATAACCTTACCAGGAGGATTTTTATTTGTATCCACCTGCTTATTAATAAGAATCTTTGTACATGTTTGCTGCACACCCCAATTTCTCTTCAGTGAAAATCTTTTGAATATCATCATACCCTCCAACCTCTCCTCTCACCTATATTTAAAAGGGTCTGTTCTTTATCCTAAAATCTACAC----------------TATTTCTTCAATAACCAAAC-AAATTTTTGAGATCCTTGTGCTAGATTTCACTATCTTAATATGAAAACCAATAATTATGAATTAAAATACAATACAggccggacacagtggctaatgcctgtaatgccaacactttgagaggccaaggcaggtggatcacgctgaggtcaggagttcgagaccag-caa-gccaatatggtaaaaccttgtctctactaaaaatacaaaaatcagccaggcatggctgcggatgcctgcagacccagctactccggaggctgaggcaagagaattgcttgaacccagtaggcggaggctacagtgagc-caagatcatgtcactacaattccggcctgg-tgacag
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          126109 241 +    138091 I
e cerAty1.NW_012002601v1         1561481 819 +   1584492 I
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2354026 1550 +   2682657 M

a score=33778.000000
s hg38.chr15_KI270851v1_alt       123675  21 +    263054 agcaagac-----------------------------------------------------------------------------------tccatctcaaaaa
s panTro5.chr15                  9380606  21 +  83230942 agcaagac-----------------------------------------------------------------------------------tccatctcaaaaa
i panTro5.chr15                C 0 I 15
s panPan2.chr15                 25680216  21 +  99763055 agcgagat-----------------------------------------------------------------------------------tccgtcttaaaaa
i panPan2.chr15                n 0 C 0
s gorGor5.CYUI01015853v1           24847  21 +    551209 agcaagac-----------------------------------------------------------------------------------tccacctcaaaaa
i gorGor5.CYUI01015853v1       C 0 I 5
s macFas5.chr7_KE145676_random     13048  21 +     18337 agcaagac-----------------------------------------------------------------------------------tctgtctcaaaaa
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4266866  21 -  58131712 agtgagac-----------------------------------------------------------------------------------cccgtctcagaaa
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3994150  21 +   4457520 agtgagac-----------------------------------------------------------------------------------cccgtctcagaaa
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3911744 104 + 158406734 agcaagactNNNNNNNNNNgaggctgaggcaggagaatcacttgaacctgagaggcggaggttgcagtgagtcaagattgtgccattgcattccagcctgggca
i calJac3.chr6                 C 0 C 0
s cebCap1.NW_016107707v1         1733517  21 +   2086007 agcaagac-----------------------------------------------------------------------------------cctatctcaaata
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3415818  21 -   3831555 agcaagac-----------------------------------------------------------------------------------tctatctcaaata
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          126109 241 +    138091 I
e cerAty1.NW_012002601v1         1561481 819 +   1584492 I
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2354026 1550 +   2682657 M

a score=7938.000000
s hg38.chr15_KI270851v1_alt       123696 5 +    263054 aaaaa
s panPan2.chr15                 25680237 5 +  99763055 ataaa
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           24873 5 +    551209 aaaaa
i gorGor5.CYUI01015853v1       I 5 C 0
s macFas5.chr7_KE145676_random     13069 5 +     18337 aaaaa
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4266887 5 -  58131712 ataaa
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3994171 5 +   4457520 aaaaa
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3911848 5 + 158406734 acaag
i calJac3.chr6                 C 0 C 0
s cebCap1.NW_016107707v1         1733538 5 +   2086007 ataat
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3415839 5 -   3831555 ataat
i aotNan1.NW_018503298v1       C 0 I 11
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e panTro5.chr15                  9380627 15 +  83230942 I
e manLeu1.NW_012101289v1          126109 241 +    138091 I
e cerAty1.NW_012002601v1         1561481 819 +   1584492 I
e macNem1.NW_012011934v1         1901343 0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2354026 1550 +   2682657 M

a score=1043.000000
s hg38.chr15_KI270851v1_alt       123701 8 +    263054 caaaaaac
s panPan2.chr15                 25680242 8 +  99763055 tattaaaa
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           24878 8 +    551209 aaaaaaaa
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     13074 8 +     18337 aaaaaaaa
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4266892 8 -  58131712 aattaaaa
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3994176 8 +   4457520 aataaaaa
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3911853 5 + 158406734 -agaaa--
i calJac3.chr6                 C 0 C 0
s cebCap1.NW_016107707v1         1733543 5 +   2086007 -agtaa--
i cebCap1.NW_016107707v1       C 0 C 0
e aotNan1.NW_018503298v1         3415844 11 -   3831555 I
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e panTro5.chr15                  9380627 15 +  83230942 I
e manLeu1.NW_012101289v1          126109 241 +    138091 I
e cerAty1.NW_012002601v1         1561481 819 +   1584492 I
e macNem1.NW_012011934v1         1901343 0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2354026 1550 +   2682657 M

a score=-6564.000000
s hg38.chr15_KI270851v1_alt       123709 9 +    263054 aaaaaacac---
s panTro5.chr15                  9380642 9 +  83230942 aaaaaacac---
i panTro5.chr15                I 15 C 0
s panPan2.chr15                 25680250 3 +  99763055 ---aaa------
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           24886 9 +    551209 aaaaaacac---
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     13082 5 +     18337 -aaaaG------
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4266900 4 -  58131712 -aaaa-------
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3994184 5 +   4457520 -aaaaa------
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3911858 5 + 158406734 -------actcc
i calJac3.chr6                 C 0 I 2
e aotNan1.NW_018503298v1         3415844 11 -   3831555 I
e cebCap1.NW_016107707v1         1733548 0 +   2086007 C
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          126109 241 +    138091 I
e cerAty1.NW_012002601v1         1561481 819 +   1584492 I
e macNem1.NW_012011934v1         1901343 0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2354026 1550 +   2682657 M

a score=354747.000000
s hg38.chr15_KI270851v1_alt       123718 132 +    263054 cattaataagtaaataaataggccaggcgtggtggctaatgcctgtaatcccaacattttgggaggccaaagtggatggaccacctgaggtcgggagttcaagaccggcctgaccaacatgaagaaaccctg
s panTro5.chr15                  9380651 132 +  83230942 cattaataagtaaataaataggccaggcgtggtggctaatgcctgtaatcccaacattttgggaggccaaagtggatggaccacctgaggtcgggagttcaagaccggcctgaccaacatgaagaaaccccg
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25680253 129 +  99763055 ---taataagtacataaatagaccgggagtggtgggtgatgcctgtaatcccaacactttgggaggccaaggcgggtggatcacctgaggtcaggagttcaagacaagcctgaccaccatgaagaaaccccg
i panPan2.chr15                C 0 n 0
s gorGor5.CYUI01015853v1           24895 132 +    551209 cattaataagtaaataaataggccaggagtggtggctaatgcctgtaatcccaacattttgggaggccaaagtggatggaccacctgaggtcgggagttcaagactggcctgaccaacatgaagaaaccccg
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     13087 132 +     18337 CTTTAATAAGTAAATAAATAggccgggcgtggtggctaatgcctataatcccaacactttgggagcccaaggcgtgaggatcacttgaggtcgggagttcaagaccagcctgaccaacgtgaaggaactcca
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4266904 114 -  58131712 --ttaataagtaaataaataggccgggcgtggtggttcatgcc----------------tgggaagccaatgcgggcagatcacctgaggtctggagttccagaccagcccgaccaccatgaagaaacccca
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3994189 130 +   4457520 --aaaaaaagtaaataaataggccgggcgtggtggttcatgcctgtaatcccaacactttgggaggccaatgcgggcagatcacctgaggtcgggagttccagaccagcctgaccaacatgaagaaaccccg
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3911865 114 + 158406734 tctcgaaaaaaagaaaacaaGGCCAGGCGCG----------------atcccagcactttgggaggccgaggcaggtggatcac--gaggtcaagacatcaagaccatcctggccaacacggtgaaacccag
i calJac3.chr6                 I 2 C 0
s cebCap1.NW_016107707v1         1733548 129 +   2086007 ---taataagtaaataaATAggctgggcatggtggctcacgcctataatcccagaactttgggaaactgaagtgggcagatcacgtggggttgggagtttgaggtcagtttgaccaatatggagaaatcccg
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3415855 132 -   3831555 taataataaGTAAATAAATCggctgggcatggtggctcacgcctgtaatcccagaactttgggaagctgaagtggtcagatcacatggggtcgggagtttgagaccagcctgaccaacaaggagaaaccctg
i aotNan1.NW_018503298v1       I 11 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          126109 241 +    138091 I
e cerAty1.NW_012002601v1         1561481 819 +   1584492 I
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2354026 1550 +   2682657 M

a score=387239.000000
s hg38.chr15_KI270851v1_alt       123850 119 +    263054 tctctaataaaactacaaaattagtggggcatggtggcgcatgcctgtaatcccagctgctcgagaggctgaggcagaggaattacttgaacctgggaggcggaggttgcagtgagtca
s panTro5.chr15                  9380783 119 +  83230942 tctctaataaaactacaaaattagtggggcatggtggtgcatgcctgtaatcccagctgctcgagaggctgaggcagaggaattacttgaacctgggaggcggaggttgcagtgagtca
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25866268 119 +  99763055 tctctaataaaactacaaaattagtggggcatggtggtgcatgcctgtaatcccagctgctcgagaggctgaggcagaggaattacttgaacctgggaggtggaggttgcagtgagtca
i panPan2.chr15                n 0 C 0
s gorGor5.CYUI01015853v1           25027 119 +    551209 tctctaataaaactacaaaattagtggagcatggtggcgcatgcctgtaatcccagctgctcgagaggctgaggcagaggaattacttgaacctgggagacggaggttgcagtgagtca
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     13219 119 +     18337 tctccactaaaactacaaaattagccgggtgcagtggcacacgcctgtaatcccagctgttcaggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgtggtgagtca
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4267018 119 -  58131712 tctctactaaacacacaaaattaaccaggtgtggtggcacacgcctgtaatcccagctgcttgagaggctgaggcaggagaatcacttgaactcgggaagtggaggttgcggtgagcca
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3994319 119 +   4457520 tctctactaaacatacaaaattagccgggtgtggtggcacacgcctgtaatcccagctgcttgagaggctgaggcaggagaatcacttgaactcgggaagtggaagtcgcggtgagccg
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3911979 119 + 158406734 tctctactaaatacaaaaaattagctgggcatggtggcacatccctgtaatctcagctacttgggaggctgagacagaagaatcatttgaacccaggaggcggaggttgcagtgagctg
i calJac3.chr6                 C 0 C 0
s cebCap1.NW_016107707v1         1733677 118 +   2086007 tctctactaaaaatacaaaattagccaggtgtggtggcgcaggcctgtaatcccagctactc-ggaggctgaggcaggagaatcacttgaacccgggaggcagaggctacggtgagccg
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3415987 118 -   3831555 tctctactaaaaataaaaaattagccaggtgtggtggcgcaagcctgtaatcccagctactc-ggaggctgaggcaggagaatcggttcaatctgggaggcggaggctgcagtgagcca
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          126109 241 +    138091 I
e cerAty1.NW_012002601v1         1561481 819 +   1584492 I
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2354026 1550 +   2682657 M

a score=260102.000000
s hg38.chr15_KI270851v1_alt       123969 70 +    263054 agatcgcaccactgcactc--cggcctgggcaacaagagcgaaactctgtctc----aaaaaaaaaaa------------------agtaaata
s panTro5.chr15                  9380902 74 +  83230942 agatcgcaccactgcactc--cggcctgggcaacaagagcgaaactctgtctcaaaaaaaaaaaaaaa------------------agtaaata
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25866387 74 +  99763055 agatcgcaccactgcactc--cggcctgggcaacaagagcgaaactctgtctcaaaaaaaaaaaaaaa------------------agtaaata
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           25146 72 +    551209 agatcgcaccactgcactc--cggcctgggcaacaagagcgagactctgtctc--aaaaaaaaaaaaa------------------agtaaata
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     13338 70 +     18337 agattgcatcactgcactc--cagcctgggtaacaagagcgaaactctgcctc----aaaaaaaaaaa------------------aaaaaaaa
i macFas5.chr7_KE145676_random C 0 I 1041
s chlSab2.chr26                  4267137 72 -  58131712 agatcgtgccattgcacttagccgcctgggcaacaagagtgaaatgctgtctc----aaaaaaaaaaa------------------aataaata
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3994438 69 +   4457520 agatcgtgccattgcact---cagcctgggcaacaagaacgaaatgctgtctc----caaaaaaaaaa------------------acaaaaaa
i colAng1.NW_012115278v1       C 0 I 7
s calJac3.chr6                   3912098 92 + 158406734 agaatgcgccattgcacac--cagcttgggcaacaagagtgaaactctgtctcaaaaaaaaaaaaaaagaaagaaagaaagaaAACAGTAAATA
i calJac3.chr6                 C 0 C 0
s saiBol1.JH378292               2355579 73 +   2682657 agattgtgtcattgcactc--cagcctgggcaacaagagcaaaactccgtctcgaaaaaaataaaaa-------------------agtaaata
i saiBol1.JH378292             M 1550 C 0
s cebCap1.NW_016107707v1         1733795 74 +   2086007 agattgtgccattgcactc--cagcctgggcaacgagagcgaaactctgtctcgaaaaaaaagaaaaa------------------agtaaata
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3416105 74 -   3831555 agactgtgccattgcactc--cggcctgggcaacaagagcaaaactccatctcaaaaaaaaagaaaaa------------------agtaaata
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          126109 241 +    138091 I
e cerAty1.NW_012002601v1         1561481 819 +   1584492 I
e macNem1.NW_012011934v1         1901343  0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=20413.000000
s hg38.chr15_KI270851v1_alt       124039 8 +    263054 aataaaac
s panTro5.chr15                  9380976 8 +  83230942 aataaaac
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25866461 8 +  99763055 aataaaaC
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           25218 8 +    551209 aataaaac
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     14449 8 +     18337 aacacaac
i macFas5.chr7_KE145676_random I 1041 C 0
s chlSab2.chr26                  4267209 8 -  58131712 aataaaat
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3994514 8 +   4457520 aataaaat
i colAng1.NW_012115278v1       I 7 C 0
s calJac3.chr6                   3912190 8 + 158406734 AATAAAAT
i calJac3.chr6                 C 0 C 0
s saiBol1.JH378292               2355652 5 +   2682657 aataa---
i saiBol1.JH378292             C 0 C 0
s cebCap1.NW_016107707v1         1733869 5 +   2086007 aataa---
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3416179 8 -   3831555 aataaaaT
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          126109 241 +    138091 I
e cerAty1.NW_012002601v1         1561481 819 +   1584492 I
e macNem1.NW_012011934v1         1901343 0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=1674266.000000
s hg38.chr15_KI270851v1_alt       124047 309 +    263054 acaatacaatacaGCTAATATGATTTACCTAAGAAGCTGTTGTATGAGCTGAACCAGAGGCAAACACTGTTTGCCAGAAGACTCACAGATCCCCGTATTAATAAGGTCTTTATCCAATGGAGTCCTCCTTCTATGAAATGTTGAGGCATTTGCCTCCTGTTCATAAATTTCTTTTTCCTTCCGTGCTTCTTTTTTTG------TATCCTGTAATTGACAAACAGAAATTGTTTACAAGTGATCTCATTACCAGGTGT---GAAGGCACACAGGCTGGCTGAGCCCTGACCCCAGTGCCAAGCTATCCCAGCCTCTGTG
s panTro5.chr15                  9380984 312 +  83230942 acaatacaatacaGCTAATATGATTTACCTAAGAAGCTGTTGTATGAGCTGAACCAGAGGCAAACACTGTTTGCCAGAAGACTCACAGATCCCCATACTAATAAGGTCTTTATCCAATGGAGTCCTCCTTCTATGAAATGTTGAGGCATTCGCTTCCTGTTCATCAATTTCTTTTTCCTTCTGTGCTTCTTTTTTTG------TATCCTGTAATTGATAAACAGAAATTGTTTACAAGTGATCTCATTACCAGGTGTGAAGAAGGCACACAGGCTGGCTGAGCCCTGACCCCAGTGCCAAGCTATCCCAGCCTCTGTG
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25866469 312 +  99763055 ACAATACAATACAGCTAATATGATTTACCTAAGAAGCTGTTGTATGAGCTGAACCAGAGGCAAACACTGTTTGCCAGAAGACTCACAGATCCCCATACTAATAAGGTCTTTATCCAATGGAGTCCTCCTTCTACGAAATGTTGAGGCATTCGCTTCCTGTTCATCAATTTCTTTTTCCTTCTGTGCTTCTTTTTTTG------TATCCTGTAATTGATAAACAGAAATTGTTTACAAGTGATCTCATTACCAGGTGTGAAGAAGGCACACAGGCTGGCTGAGCCCTGACCCCAGTGCCAAGCTATCCCAGCCTCTGTG
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           25226 309 +    551209 acaatacaatacaGCTAATATGATTTACCTAAGAAGCTGTTGTATGAGCTGAACCAGAGGCAAACACTGTTTGCCAGAAGACTCACAGATCCCCGTATTAATAAGGTCTTTATCCAATGGAGTCCTCCTTCTATGAAATGTTGAGGCATTCGCTTCCTGTTCATCAATTTCTTTTTCCTTCCATGCTTCTTTTTTTG------TATCCTGTAATTGATAAACAGAAATTGTTTACAAGTGATCTCATTACCAGGTGT---GAAGGCACACAGGCTGGCTGAGCCCTGACCCCAGTGCCAAGCTATCCCAGCCTCTGTG
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     14457 315 +     18337 acaacaaaatacaGCTAATACGATTTACCTAAGAAGCTGTTGTACGAGCTGAACCAGAGGTAAACACCGTTTGCCAGAAGACTCACAGATTCCCGTATTAACAAGGTCTTTATCCAATGGCGTCCTGCTTGTATGAAATGTTGAGGCATTCGCTTCCTGTTCATCAACTTCTTTTTCCTTCTGTGCTTCTTTTTGGGCTTCAATATCCTGGAATTCATAAACGGACACTGTTTACAAGGGATCTCATTAGCAGGTGT---GAAGGCACACAGGCTGGCTGAGCCCTGACCCCAGGGCCAAGCTATCCCAGCCTGTGTG
i macFas5.chr7_KE145676_random C 0 I 1
s chlSab2.chr26                  4267217 315 -  58131712 acaatacaatacaGCTAATACGATTTACCTAAGAAGCTGTTGTACGAGCTGAACCAGAGGCAAACACTGTTTGCCAGAAGACTCACAGATCCCCGTATTAATAAGGTCTTTATCCAATGGCGTCCTGCTTCTGTGAAACGTTGAGGCATTTGCTTCCTGTTCATCAATTTCTTTTTCCTTCTGTGCTTCTTTTTTGGCTTCAATATCCTGTAATTTGTAAACAAAAATTGTTTACAAGTGATCTCATTAGCAGGTGT---GAAGGCACACAGGCTGGCTGAGCCCTGACCCCAGTGCCAAGCTATCCCAGCCTCTGTG
i chlSab2.chr26                C 0 I 1
s manLeu1.NW_012101289v1          126350 315 +    138091 acaatacaatacagCTCATACGACCTACCTAAGAAGCTGTTGTACGAGCTGAACCAGAGGTAAACACCGTTTGCCAGAAGACTCACAGATTCCCGTATTAACAAGGTCTTTATCCAATGCAGTCCTGCTTCTATGAAATGTTGAGGCATTTGCTTCCTGTTCATCAACTTCTTTTTCCTTCTGTGCTTCTTTTTTGGCTTCAATATCCTGGAATTCATAAACGGAAACTGTTTACAAGGGATCTCATGAGCAGGTGT---GAAGGCACACAGGCTGGCTGAGCCCTGACCCCAGGGCCAAGCTATCCCAGCCTCTGTG
i manLeu1.NW_012101289v1       I 241 I 1
s colAng1.NW_012115278v1         3994522 315 +   4457520 acaatacaatacTGCTAATACGATTTACCTAAGAAGCTGTTGTATGAGCTGAACCAGAGGCAAACACTGTTTGCCAGAAGACTCACAGATCCCCGTATTAATAAGGTCTTTATCCAATGGAGTCCTGCTTCTGTGAAATGTTGAGGCATTTGCTTCCTGTTCATCAATTTCTTTTTCCTTCTGTGCTTCTTTTTTCGCTTCAATATCCTGTAATTTGTAAACAAAAACTGTTTACAAGTGATCTCATTAGCAGGTGT---GAAGGCACACAGGCTGGCTGAGCCCTGACCCCAGTGCCAAGCCATCCCAGCCTCTGTG
i colAng1.NW_012115278v1       C 0 I 1
s calJac3.chr6                   3912198 314 + 158406734 ACAATACATCCAAACTAA-ACAATTTACCTAAGAAGCTGTTGTATGAGCTGAACCAGAGGCAAACACTGTTTGCCGGAAGACTCATAGATCCCCGTATTAATAAGGTCTTTATCCAATGGAGTCCTGCTTCTATGAAATGTTGAGGCATTTGCTTCCTGTTCATCAATTTCTTTTTCCTTCTGTGCTTCTTTTTTGGCTTCAATATCCTGTAATTCATAAACAGAAGTTGGTTACAAGTGATCTCATGAGCAGGTGT---GAAGGTACACAGGCTGGCTCAGCCCTGATCCCAGTGCCAAGTTATCCCAGCCTCTGTC
i calJac3.chr6                 C 0 I 1
s saiBol1.JH378292               2355657 312 +   2682657 --aaTACATCTAAACTAA-ACAATTTACCTAAGCAGCTGCTGTATGAGCTGAACCAGAGGCAAACACTGTTTGCCAGAAGACTCATAGATCCCCGTATTAATAAGGTCTTTATCCAATGGAGTCCTGCTTCTATGAAATGTTGAGGCATTCGCTTCCTGTTCATCAATTTCTTTTTCCTTCTGTGCTTCTGTTTTGGCTTCAATATCCTGTAATTCATAAACAGAAGTTGGTTACAAGTGATCTCACGAGCAGGTGT---GAAGGTACACAGGCTGGCTCAGCCCTGATCCCAGTGCCAAGTTATCCCAGCCTCTGCA
i saiBol1.JH378292             C 0 I 1
s cebCap1.NW_016107707v1         1733874 312 +   2086007 --aaTACATCTAAACTAA-ACAATTTACCTAAGAAGCTGTTGTATGAGCTGAACCAGAGGCAAACACTGTTTGCCAGAAGACTCATAGATCCCCGTATTAATAAGGTCTTTATCCAATGGAGTCCTGCTTCTATGAAATGTTGAGGCATTCACTTCCTGTTCATCAATTTCTTTTTCCTTCTGTGCTTCTTTTTTGGCTTCAATATCCTGTAATTCATAAACAGAAGTTGGTTACAAGTGATCTCATGAGCAGGTGT---GAAGGTACACAGGCTGGCTCAGCCCTGATCCCAGTGCCAAGTTATACCAGCCTCTGCG
i cebCap1.NW_016107707v1       C 0 I 26
s aotNan1.NW_018503298v1         3416187 314 -   3831555 ATAATACATCTAAACCAA-ACAATTTACCTAAGAAGCTGTTGTATGAGCTGAACCAGAGGCAAACACTGTTTGCCAGAAGACTCATAGATCCCCGTATTAATAAGGTCTTTATCCAATGGAGTCCTGCTTCTATGAAATGTTGAGGCATTCGCTTCCTGTTCATCAATTTCTTTTTCCTTCTGTGCTTCCTTTTTGGCTTCAATATCCTGTAATTCATAAACAGAAGTTGGTTACAAGTGATCTCATGAGCAGGTGT---GAAGGCACCCAGGCTGGCTCAGCCCTGATCCCAGTGCCAAGTTATCCCAGCCTCTGTG
i aotNan1.NW_018503298v1       C 0 I 1
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e cerAty1.NW_012002601v1         1561481 819 +   1584492 I
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=90349.000000
s hg38.chr15_KI270851v1_alt       124356 26 +    263054 GCTGCCACACCCATCCACCCAC---AGGC
s panTro5.chr15                  9381296 25 +  83230942 GCTGCCACACACACCCACCCAC---AGG-
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25866781 25 +  99763055 GCTGCCACACACACCCACCCAC---AGG-
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           25535 25 +    551209 GCTGCCACACACACCCACCCAC---AGG-
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     14773 28 +     18337 GCCACCGCACACACCTACCCACGTAAGG-
i macFas5.chr7_KE145676_random I 1 C 0
s chlSab2.chr26                  4267533 25 -  58131712 GCTACCACACACACCTACCCAC---AGG-
i chlSab2.chr26                I 1 C 0
s manLeu1.NW_012101289v1          126666 28 +    138091 GCCACCGCACACACCTACCCGCGTAAGG-
i manLeu1.NW_012101289v1       I 1 C 0
s colAng1.NW_012115278v1         3994838 25 +   4457520 GCTACCACACACACCTACCCAC---AGG-
i colAng1.NW_012115278v1       I 1 C 0
s calJac3.chr6                   3912513 25 + 158406734 GCTAATGCACACACCTACCCAC---AGG-
i calJac3.chr6                 I 1 C 0
s saiBol1.JH378292               2355970 25 +   2682657 TCGAATGCACACACCTACCCAC---AGG-
i saiBol1.JH378292             I 1 C 0
s aotNan1.NW_018503298v1         3416502 25 -   3831555 GCTAATGCACACACCTACCCAC---AGG-
i aotNan1.NW_018503298v1       I 1 C 0
e cebCap1.NW_016107707v1         1734186 26 +   2086007 I
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e cerAty1.NW_012002601v1         1561481 819 +   1584492 I
e macNem1.NW_012011934v1         1901343  0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=598484.000000
s hg38.chr15_KI270851v1_alt       124382 114 +    263054 CCCCCACCTGCCCTGTTGGAAACCCCAACTCATTTGTGCAGTTTC-AAACAGTGTCTTCTTTTTACAGATCCAAGGTCCAGGCTGCCTCTGCTGATGCTCTCCAGCCTCCTTCTG
s panTro5.chr15                  9381321 114 +  83230942 CCCCCACCTGCCCTGTTGGAAACCCCAACTCATTTGTGCAGTTTC-AAATAGTGTCTTCTTTTTACAGATCCAAGGTCCAGGCTGCCTCTGCTGATGCTCTCCAGCCTCCTTCTG
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25866806 114 +  99763055 CCCCCACCTGCCCTGTTGGAAACCCCAACTCATTTGTGCAGTTTC-AAATAGTGTCTTCTTTTTACAGATCCAAGGTCCAGGCTGCCTCTGCTGATGCTCTCCAGCCTCCTTCTG
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           25560 114 +    551209 CCCCCACCTGCCCTGTTGGAAACCCCAACTCATTTGTGCAGTTTC-AAACAGTGTCTTCTTTTTACAGATCCAAGGTCCAGGCTGCCTCTGCTGATGCTCTCCAGCCTCCTTCTG
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     14801 110 +     18337 CCCACACCTGCCCTGTTGGAAACCCCAACTCAGTTGTGCAGTTT-----CAGTGTCTTCTTTTTACAGATCCAAGGTCCAGGCGGCCTCTGCTGATGCTCTCCAGCCTCCTTCTG
i macFas5.chr7_KE145676_random C 0 C 0
s chlSab2.chr26                  4267558 114 -  58131712 ACCCCACCTGCCCTGTTGAAAACCCCAACTCAGCTGTGCAGTTTC-AAACAGAGTCTTCTTTTTACAGATCCAAGGTCCAGGCTGCCTCTGCTGACGCTCTCCAGCCTCCTTCTG
i chlSab2.chr26                C 0 C 0
s manLeu1.NW_012101289v1          126694 110 +    138091 CCCACACCTGCCCTGTTGGAAACCCCAACTCAGTTGTGCAGTTT-----CAGTGTCTTCTTTTCACAGATCCAAGGTCCAGGCTGCCTCTGCTGATGCTCTCCAGCCTCCTTCTC
i manLeu1.NW_012101289v1       C 0 C 0
s colAng1.NW_012115278v1         3994863 114 +   4457520 ACCCCACCTGCCCTGTTGAAAACCCCAACTCGGCTGTGCAGTTTC-AAACAGTGTCTTCTTTTTACAGATCCAAGGTCCAGGCTGCCTCTGCTGATGCTCTCCAGCCTCCTTCTG
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3912538 115 + 158406734 CCCCCAGCTTCCCTGTTGGAAGCCCCAACTCAGTTTTGCAGTTTCTAAGCAGTGCTTTCTTTTTACAGATCCAAGGCCCAGGATGCCTCAGCTGATGGTCTCCAGCCTCCTTCTG
i calJac3.chr6                 C 0 C 0
s saiBol1.JH378292               2355995 115 +   2682657 CCCCCACCTGCCCTGTTGGAAATCCCAGCTCAGTTTTGCAGTTCCTAAACAGTGCTTTCTTTTTACAGATCCAAGGCCCAGGATGCCTCAGCTGATGGTCTCCAGCCTCCTTCTG
i saiBol1.JH378292             C 0 C 0
s cebCap1.NW_016107707v1         1734212 115 +   2086007 CCCCCACCTGCCCTGTTGGAAACCCCAACTCAGTTTTGCAGTTTCTAAACAGTGCTTTCTTTTTACAGATCCAAGGCCCAGGATGCCTCAGCTGATGGTCTCCAGCCTCCTTCTG
i cebCap1.NW_016107707v1       I 26 C 0
s aotNan1.NW_018503298v1         3416527 115 -   3831555 CCTCCACCTGCCCTGTTGGAAACCCCAACTCAGTTTTGCAGTTTCTAAACAGTGCTTTCTTTTTACAGATCCAAGGCCCAGGATGCCTCAGCTGATCGTCTCCAGCCTCCTTCTG
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e cerAty1.NW_012002601v1         1561481 819 +   1584492 I
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=477254.000000
s hg38.chr15_KI270851v1_alt       124496 88 +    263054 TGAAGTCCCTAAAATCCTTAACCCTGCTAATGGCTCACACAAAAC-CCAATGTGATCGGCTCCACACACGCAGCATCCAGCTGCTCTgt
s panTro5.chr15                  9381435 88 +  83230942 TGAAGTCCCTAAAATCCTTAACCCTGCTAATGGCTCACACAAAAC-CCAATGTGATCGGCTCCACACACGCAGCATCCAGCTGCTCTgt
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25866920 88 +  99763055 TGAAGTCCCTAAAATCCTTAACCCTGCTAATGGCTCACACAAAAC-CCAATGTGATCGGCTCCACACACGCAGCATCCAGCTGCTCTgt
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           25674 88 +    551209 TGAAGTCCCTAAAATCCTTAACCCTGCTACTGGCTCTCACAAAAC-CCAGTGTGATCTGCCCCACACACGCAGCATCCAGCTGCTCTgt
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     14911 88 +     18337 TGAAGTCCCTAAAATCCTTAACCCTGCTCCTGGCTCTCACAAACA-CCCATGGGATCCGCCCCACACACGCAGCATCCAGCTGCtttgt
i macFas5.chr7_KE145676_random C 0 C 0
s cerAty1.NW_012002601v1         1562300 87 +   1584492 TGAAGTCCCTAAAATCCTTAACCCTGCTCCTGGCTCTCACAAACA-CCCATGTGATCCG-CCCACACATGCCGCATCCAGCTGCtttgt
i cerAty1.NW_012002601v1       I 819 C 0
s chlSab2.chr26                  4267672 88 -  58131712 TGAAGTCCCTAAAATCCTTAACCCTGCTACTGGCTCTCACAAAAC-CCAATGTGACCTGCCCCACACACGCAGCATCCAGCTGCtttgt
i chlSab2.chr26                C 0 C 0
s manLeu1.NW_012101289v1          126804 87 +    138091 TGAAGTCCCTAAAATCCTTAACCCTGCTCCTGGCTCTCACAAACA-CCCATGTGATCCA-CCCACACACGCCGCATCCAGCTGCTTTgt
i manLeu1.NW_012101289v1       C 0 C 0
s colAng1.NW_012115278v1         3994977 89 +   4457520 TGAAGTCCCTAAAATCTTTAATCCTGCTACTGGCTCTCACAAATATCCAATGTGATCTGCCCCACACACGCAGCATCTAGCTGCTTTgt
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3912653 86 + 158406734 GGAAGTCCCTAAAATCCTGAACCCTGCTA-CGGCTCTCACACACACCCAGTGTGATCTGCCCCACACACA--GCATCCATCTGTTTTCT
i calJac3.chr6                 C 0 C 0
s saiBol1.JH378292               2356110 89 +   2682657 GGAAGTCCTTAAAATCCTGAACCCTGCTACCGGCTTTCATACACACCCAACATGATCTGCCCCACACACACGGCACCCATCTGCTTTGT
i saiBol1.JH378292             C 0 C 0
s cebCap1.NW_016107707v1         1734327 89 +   2086007 GGAAGTCCCTGAAATCTTGAACCCTGCTACCGGCTCTCACACACACCCAACGTGATCTGCCCCACACACACAGCATCCATCTGCTTTGT
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3416642 89 -   3831555 GGAAGTCCCTAAAATCTTGAACCCTGCTACTGGCTCTCACACACACCCAATGTGATCTGCCCCACACACACAGCATCCATCTGCTTTGT
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e macNem1.NW_012011934v1         1901343  0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=15345.000000
s hg38.chr15_KI270851v1_alt       124584 3 +    263054 aag
s panTro5.chr15                  9381523 3 +  83230942 aag
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25867008 3 +  99763055 aag
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           25762 3 +    551209 aag
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     14999 3 +     18337 gag
i macFas5.chr7_KE145676_random C 0 C 0
s cerAty1.NW_012002601v1         1562387 3 +   1584492 gag
i cerAty1.NW_012002601v1       C 0 C 0
s chlSab2.chr26                  4267760 3 -  58131712 aag
i chlSab2.chr26                C 0 C 0
s manLeu1.NW_012101289v1          126891 3 +    138091 gag
i manLeu1.NW_012101289v1       C 0 C 0
s colAng1.NW_012115278v1         3995066 3 +   4457520 aag
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3912739 3 + 158406734 AAG
i calJac3.chr6                 C 0 I 1
s saiBol1.JH378292               2356199 3 +   2682657 AAG
i saiBol1.JH378292             C 0 I 1
s aotNan1.NW_018503298v1         3416731 3 -   3831555 AAG
i aotNan1.NW_018503298v1       C 0 I 1
e cebCap1.NW_016107707v1         1734416 0 +   2086007 C
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e macNem1.NW_012011934v1         1901343 0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=731022.000000
s hg38.chr15_KI270851v1_alt       124587 257 +    263054 gaca---agaaggagctagaattctcacacac-----aaaagtcctggttcaaatgcaaatggcaaagccactttgggaaactatgaacacacacttaccccaggacctaacaaattccactccaagtgtttatccaaagggagaacatatgttcactaaagtacttgttcacagcacaattgtggcagctctacacggccaaaaaccagaaa------gcctgggcgcggtggctcacgcttgtaatcccaacactttgggaggccaagg
s panTro5.chr15                  9381526 263 +  83230942 gaca---agaaggagctagaattctcacacac-----aaaagtcctggttcaaatgcaaatggcaaagcctctttggaaaactatgaacacacacttaccccaggacctaacaaattccactccaagtgtttacccaaagggagaacgtatgttcactaaagtacttgttcacagcacaatcgtggcagctctacacggccaaaaaccagaaagcctgggcctgggcgcggtggctcacgcttataatcccaacactttgggaggccaagg
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25867011 263 +  99763055 gaca---agaaggagctagaattctcacacac-----aaaagtcctggttcaaatgcaaatggcaaagcctctttggaaaactatgaacacacacttaccccaggacctaacaaattccactccaagtgtttacccaaagggagaacatatgttcactaaagtacttgttcacagcacaatcgtggcagctctacacagccaaaaaccagaaagcctgggcctgggcgcggtggctcacgcttgtaatcccaacactttgggaggccaagg
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           25765 256 +    551209 gaca---agaaggagctagaattctcacacac-----aaaagtcctggttcaaatgcaaatggcaaagccactttgggaaactatgaacacacacttaccccaggacctaac-aattccactccaagtgtttacccaaagggagaatgtatgttcactaaagtacttgttcacagcacaaccgtggcagctctacacggccaaaaaccagaaa------gcctgggcgcggtggctcacgcttgtaatcccaacactttgggaggccaagg
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     15002 248 +     18337 gaca---agaa---gctagaattctcacacac-----a------ctggttcaagtgtaaacggcaaagccactctgggaaaccatgaacagctacttaccccaggacctaacaaattccactccaagtgtttaccctaagggagaacatatgttcactgaagtacttgtacacagcacaatcgtggcagctctacacggccaaaaaccagaaa------gcctgggcgcggtggctcacgcttgtaatcccaacactttgggaggccaagg
i macFas5.chr7_KE145676_random C 0 C 0
s cerAty1.NW_012002601v1         1562390 248 +   1584492 gaca---agaa---gctagaattctcacacac-----a------ctggttcaagtgtaaacggcaaagccactttgcgaaaccataaacagctacttaccccaggacctaacaaattccactccaggtgtttacccgaagggagaacgtatgttcactgaagtacttgtacacagcacaatcgtggcagctctacacggccaaaaaccaaaaa------gcctgggcgcggtggctcacgcttgtaatcccaacactttgggaggccaagg
i cerAty1.NW_012002601v1       C 0 C 0
s chlSab2.chr26                  4267763 256 -  58131712 gataagcagca---gctataattctcacacacactgga------ctggttcaaatgtaaatggcaaagccactctgggaaactatgaacacacacggaccccaagacctaacaaattccactccaagtgtttaccctaagggagaacatatgctcactaaagtacttgcacacagcacaatcatggcagctctacacggccaaaaaccagaaa------gcctgggcacggtggctcatgcttgtaatcccaacagtatggaaggccaagg
i chlSab2.chr26                C 0 C 0
s manLeu1.NW_012101289v1          126894 248 +    138091 gaca---agaa---gctagaattctcacacac-----a------ctggttcaagtgtcaacggcaaagccactctgggaaaccatgaacagctacttaccccaggacctaacaaattccactccaggtgtttaccctaagggagaacgtatgttcactgaagtacttgtacacagcacaatcgtggcagctctaCACGGCcaaaaaccagaaa------gcctgggcgcggtggctcacgcttgtaatcccaacactttgggaggccaagg
i manLeu1.NW_012101289v1       C 0 M 1065
s colAng1.NW_012115278v1         3995069 251 +   4457520 gata---agaagctgctataattcttacacac-----a------ctggttcaaatgcaaatggcaaagccactctgggaaactatgaacacacactgaccccaggacctaacaaattccattccaagtgtttacccaaagggagaacatatgttcactaaagtacttgtacacagcacaatcgtggcagctctacatggccaaaaaccagaaa------gcctgggcatggtggctcatgcttgtaatcccaacactatggaaggccaagg
i colAng1.NW_012115278v1       C 0 C 0
e aotNan1.NW_018503298v1         3416734   1 -   3831555 I
e cebCap1.NW_016107707v1         1734416   0 +   2086007 C
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2356202   1 +   2682657 I
e calJac3.chr6                   3912742   1 + 158406734 I

a score=815076.000000
s hg38.chr15_KI270851v1_alt       124844 367 +    263054 tggggggatcactggagcccaggagttgaagaccagcct-tgcaacacagtgaaaccttgtctctacaaaaaaatcaaaaaactagccgggcatggtgacatgtatgtggtccctgcaacacaggaggctgaggtgggaggatcatttgagcctaggaggacaaggctgcagtgagccaacctcaggtcactgtatacagcctgggtgacagagcaagaccctgtctcaaaaaaaaaaaaaaaaaaagaaaacaaaaaccaaaaa---caattacatgtccttcaataggagaatgaactaacaaacagtactacacctataaaatggaaaacttcccaataataaaaacgaagtcgcaatacacacaaca
s panTro5.chr15                  9381789 364 +  83230942 tcgggggatcacttgagcccaggagttgaagaccagcct-tgcaacacagtgaaaccttgtctctacaaaaaaatcaaaaaactagccaggcatggtgacatgtatgtggtccctgcaacacaggaggctgaggtgggaggatcatttgagcctaggaggacaaggctgcagtgagccaacatcaggtcactgtatacagcctgggtgacagagcaagaccctgtctc---aaaaaaaaaaaaaaaagaaaacaaaaaccaaaaa---caattacatgtccttcaataggagaatgaactaacaaacagtactacacctataaaatggaaaacttcccaataatcaagacgaagtcgcaatacacacaaca
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25867274 359 +  99763055 tcgggggatcacttgagcccaggagttgaagaccagcct-tgcaacacagtgaaaccttgtctctacaaaaaaatcaaaaaactagccgggcatggtgacatgtatgtggtcccggcaacacaggaggctgaggtgggaggatcatttgagcctaggaggacaaggctgcagtgagccaacatcaggtcactgtatacagcctgggtgacagagcaagaccctgtctc--------aaaaaaaaaaaagaaacaaaaaccaaaaa---caattacatgtccttcaataggagaatgaactaacaaacagtactacacctataaaatggaaaacttcccaataatcaaaacgaagtcgcaatacacacaaca
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           26021 366 +    551209 tcgggggatcacttgagcccaggagttgaagaccagcct-tgcaacacagtgaaaccttgtctctacaaaaaaatcaaaaaactagctgggcatggtgacatgtctgtggtccctgcaacacaggaggctgaggtgggaggatcatttgagcctaggaggacaaggctgcagtgagccaacatcaggtcactgtatacagcctgggtgacagagcaagaccctgtctc-agaaaaaaaaaaaaaaaagaaaacaaaaaccaaaaa---caattacatgtccttcaataggagaatgaactaacaaacagtactacacctataaaatggaaaacttcccaataataaaaacgaagtcgcaatacacacaaca
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     15250 356 +     18337 ttgggggatcacttgagcccaggagttcgagaccagcctgtgcaacatagtgaaaccttgtctctacaaaaaaatcaaaaaactagccgggcatcgtgacctgactgtggtccctgcaacacaggaggccgaggtgggaggatcgtttgaactgaggaggaccaggctgcagtgaaccaagatcaggtcactgcatccagcctgggtgacagagcaagaccctgtctc-aaaaaaaaaaagaa-----------aaaaccaaaaa---caattaaatgtccttcaataggagaatgaactaacaaccagcactgcacctataaaatggaaaacttcccaataataaaaaccaagtcacaagacacacaaca
i macFas5.chr7_KE145676_random C 0 C 0
s cerAty1.NW_012002601v1         1562638 362 +   1584492 ctgggggatcacttgagcccaggagttcgagaccagcctgtgcaacatagtgaaaccttgtctctacaaaaaaatcaaaaaactagccaggcatcgtgacctgactgtggtccctgcaacacaggaggctgaggtgggaggatcgtttgagccgaggaggaccaggctgcagtgagccaagatcaggtcactgtatccagcctgggtgacagagcaagaccctgtctc-aaaaaaaaaaaaaa--------accaaaacaaaaaaaaccaattaaatctccttcaataggagaatgaactaacaaccagcactgcacctataaaatggaaaacttcccaataataaaaaccaagtcacaagacacacatca
i cerAty1.NW_012002601v1       C 0 C 0
s chlSab2.chr26                  4268019 367 -  58131712 tggggggatcacttgagcccaggagttcgagaccatcctgtgcaacatagtgaaaacttgtctctacaaaaaaatcaaaaaactagccgggcatggtgacacgcctgtggtccctgcaacacaggaggctgaggtgggaggatcatttgagccgaggaggacaaggctgccgtgagccaacatcaggtcactgcatccagcctgggcgacagagcgagacaccgtctc-aggaaaaaaaaaaaaaaagaatacaaaaaccaaaag---caattaaatgtcctttaatagaagaatgaactaacaaccagcactacacctataaaatggaaaacttcccaataataaaaaccaagtcacaagacacacaaca
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3995320 359 +   4457520 tggggggatcacttgagcccaggagttcgagaccatcctgtgcaacatagtgaaaccctgtttctacaaaaaaatcaaaaaactagccaggcatggtgacacgcctgtggtccctgcaacacaggaggctgaggtgggaggatcatttgagccgaggaggacaaggctgccgtgagccaacatcaggtcactgcatccagcctgggcaacagagcgagactctgtctc-aaaaaaaaaaaaat--------acaaaaaccaaaag---caattaaatgtccttcaatagaagaatgaactaacaaccagcactacacctataaactggaaaacttcccaataataaaaaccaagtcacaagacacacaaca
i colAng1.NW_012115278v1       C 0 C 0
e aotNan1.NW_018503298v1         3416734   1 -   3831555 I
e cebCap1.NW_016107707v1         1734416   0 +   2086007 C
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          127142 1065 +    138091 M
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2356202   1 +   2682657 I
e calJac3.chr6                   3912742   1 + 158406734 I

a score=1905723.000000
s hg38.chr15_KI270851v1_alt       125211 409 +    263054 gt--gagtgaatctgaaaatcattctccaaggcaaagcaggaaagagtgcatactatacagttatattgctgcgacactcagagcaggaaaaatgaatctaATCTCAGGGCAGGGGAGTATCCTGGCTGCAAGTGCCAAGGAGCACAGGGATCTTTCCGGGTGACGGGAATGGTCTACATGAGGAACAGGTTACCTGTTAACTTCACTGAAACAGACAACATGCAGTATTTTATCACAAAT------CATCTCAATAATTTTTAAAATTAGCACATAAAAGAATTTTAATTTAAAAAAATACTTGGATAT------AAGTTTAGTGTTTTACTGTTTTCAGTTATTCTTCACATGTGTGAGTGTGGTATTTCCGATCTCAGCCCACCACCAGGTCACGTGTGCCTCCAAGGCCATACCTGGAT
s panTro5.chr15                  9382153 409 +  83230942 gt--gagtgaatctgaaaatcattctccaaggcaaagcaggaaagagtgcatactatacagttatattgctgcgacactcagagcaggaaaaatgaatctaatctcagggcaggggagtatcctggctgcaagtgccaaggagcacagggatctttccgggtgacgggaatggtctacatGATGAACAGGTTACCTGTTAACTTCACTGAAACAGACAACATGCAGTATTTTATCACAAAT------CATCTCAATAATTTTTAAAATTAGCACATAAAAGAATTTTAATTTAAAAAAATACTTGGATAT------AAGTTTAGTGTTTTACTGTTTTCAGTTATTCTTCACATGTGTGAGTGTGGTATTTCCGATCTCAGCCCACCACCAGGTCACGTGTGCCTCCAAGGCCATACCTGGAT
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25867633 409 +  99763055 gt--gagtgaatctgaaaatcattctccaaggcaaagcaggaaagagtgcatactatacagttatattgctgcgacactcagagcaggaaaaatgaatctaatctcagggcaggggagtatcctggctgcaagtgccaaggagcacagggatctttccgggtgacgggaatggtctacatGATGAACAGGTTACCTGTTAACTTCACTGAAACAGACAACATGCAGTATTTTATCACAAAT------CATCTCAATAATTTTTAAAATTAGCACATAAAAGAATTTTAATTTAAAAAAATACTTGGATAT------AAGTTTAGTGTTTTACTGTTTTCAGTTATTCTTCACATGTGTGAGTGTGGTATTTCCGATCTCAGCCCACCACCAGGTCACGTGTGCCTCCAAGGCCATACCTGGAT
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           26387 409 +    551209 gt--gagtgaatctgaaaatcattctccaaggcaaagcaggaaagagtgcatactatacagttatattgctgcgacactcagagcaggaaaaatgaatctaATCTCAGGGCAGGGGAGTATCCTGGCTGCAAGTGCCAAGGAGCACAGGGATCTTTCCGGGTGACGGGAATGGTCTACATGATGAACAGGTTACCTGTTAACTTCACTGAAACAGACAACATGCAGTATTTTATCACAAAT------CATCTCAATAATTTTTAAAATTAGCACAAAAAAGAATTTTAATTTAAAAAAATACTTGGATAT------AAGTTTAGAGTTTTACTGTTTTCAGTTATTCTTCACATGTGTGAGTGTGGTATTTCCAATCTCAGCCCACCACCAGGTCACGTGTGCCTCCAAGGCCATACCTGGAT
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     15606 408 +     18337 gtgtgagtgaatccgaaaATCCTTCTCCAAGGCAACGCAGGAAAGAGTGCAGCCTCTGCAGCTACATTGCTGCAACACTCAGAGCAGG-AAAATGAATCTCATCTGAGGGCAGGGGAGCGTCCCCGTTGCGAGTGCCAAGGGGCACAGGGATCTTTCCGGGTGATGGGAACAGTCTACATGATGGACAGGTTACCTGTTAACTTCACTGAAACAGACAACACCCAGGATT---TCGCAATTAAATCATATCTCAGTAATTGTTTAAATTAGCACATAAAAGAATTTT------TAAAAATACTTGGATATCA-TACAAGTTTA--GTTTTACTGTTTTCAGTTATTCTTCGT--GCGTAAGTGTGGTATTTCCGATCTCAGAGCACCACCAGGTCACGTGTGCCTCCAAGGCCATACCTGGAT
i macFas5.chr7_KE145676_random C 0 C 0
s cerAty1.NW_012002601v1         1563000 406 +   1584492 gtgtgagtgaatccgaaaatccttctccaaggcaacgcaggaaagagtgcagcctctgcagttacattgctgcaacactcagagcagg-aaaatgaatctCATCTGAGGGCAGGGGAGCGTCCTGGCTGCGAGTGCCAAGGGGCACAGGGATCTTCCCCGGTGTTGGGAATGGTCTACATGATGGACAAGTTACCTGTTAACTTCACTGAAACAGACAACACCCAGGATT---GCACAATTAAATCATATCTCAGTAATTGTTTAAATTAGCACATAAAAGAG-TTT------AAAAAATACTTGGATATGA-TACAAG-TTA--GTTTTACTGTTTTCAGTTATTCTTCAC--GTGTGAGTGTGGTATTTCCGATCTCAGAGCACCACCAGGTCACGTGTGCCTCCAAGGCCATACCTGGAT
i cerAty1.NW_012002601v1       C 0 C 0
s chlSab2.chr26                  4268386 417 -  58131712 gt----gtgaatctgaaaatccttctccacagcaacgcaggaaagagtgcagcctctgcagttacattgctgcaacactcagagcagg-aaaatgaatctcatctgagggcaggggagcgtcccggctgcgagtgccaaggggcacagggatctttccgggtgacgggaatggtctacatGATGGACAGGTTACCTGTTAAATTCACTGAAACAGACAACACGCAGGATTTCATCACAATTAAATCATATCTCAATAATTGTTTAAATTAGCACATAAAATAATTTTAATTTAAAAAAATACTTGGATATGA-TAAAAGTTTAGTGTTTTACTATTTTCAGTTATTCTTCACATGTGTGAATGTGGTATTTCCGATCTCAGAGCACCACCAGGTCACGTGTGCCTCCAAGGCCATACCTGGAT
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3995679 414 +   4457520 gt----gtgaatctgaaaatccttctccaaggccacgcaggaaagagtgcatcctCTGCAGTTACGCTGCTGCAACACTCAGAGCAGG-AAAATGAATCTCATCTGAGGGCAGGGGAGAGACCTAGCTGCGAGTGCCAAGGGGCACAGGGATCTTTCCGGGTGACGAGAATGGTCTACATGATGGACAGGTTACCTCTTAAATTCACTGAAACAGACAACATGTAGGATTTCGTCACAATTAAATCATATCTCAATAATTGTTTAAATTAGCACATAAAAGAATTTAAATTTTAAAAAATACTTGGATATGA-TA-AATTTTAGTGTTTTACTGTTTTCAGTTATTCTTCACATGTGTGAATGTGGTATTTCCGATCTCAGAGCACCACCAGGTCACGTGTGCCTCCAAG--CATACCTGGAT
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3912743 414 + 158406734 GT--GACTGAATCTGAAAATCATTCTCTGAGGCAAAACAGGAAAGAATATACACTATACAGTTATGTTTGCGCAAC-TTCAGAGCAGGCAAAATAAATCTAATCTGAGGGCAGGGGAGTATCCTGACTGCAAGTACCAAGGGGCAGAGGGATCTTGCTGGGTGACGGAAATGATCTACATGATGAACAGGTTACCTGTTAAATTCACTGAAACAGACAACATGCAGCATTTTATCACAAATAAA---TATCTCAATACTTTTTAAAATTAGTACATAAAATAA-GTTAACTAAAAACAGTACTTGGGTGTGACTATAAGTTTGGTATTTTACTGTTTTCAGTTATCCTCCACATGTGT--GTGTGGCATTACCGATCTCAGCTCACCACCAGGTCAGGTGTGCCTCTAAGGCCATACCTGGAT
i calJac3.chr6                 I 1 M 398
s saiBol1.JH378292               2356203 415 +   2682657 Gt--gagtgaatctgaaaatcattctctgaagcagaacaggaaagagtatatactatacagttatgtttgtgcaacattcggagcaggcaaaataaatctaatctgaggccaggggagtatcctggctgtaagtaccaaggggcacaaggatctttctgggtgacggaggtgatctacatGATGAACAGGTTACCAGCTAAATTCACTAAAACAGACAACATGCAGCATTTTATCACAATTAAA---TATCTCAATACTTTTTAAAACTAGTACataaaataa-attaattaaaaaCAGTACTGGCATGTGACTAAAAGTTTGGTGTTTGACTGTTTTCAGTTATCCTCCAAATGTGTGAGTGTGGCATTTCCCATCTCAGCT--CCACCAGGACAGGTGTGCCTCGAAGGCCATACCTGGAT
i saiBol1.JH378292             I 1 C 0
s cebCap1.NW_016107707v1         1734416 412 +   2086007 Gt--gagtgaatctgaaaatcattctctgaggcaaaacaggaaagagtatatactatacagttatgtttgtgcaacattcagagcaggcaaaataaatctaatctgagggcaggggagtatcctggctgcaagtaccaaggggcacagggatctttctgggtgacggaaatgatctacatGATGAACAGGTTACCTGCTAAATTCACTGAAACAGACAACATGCAGCATTTTATCACAATTAAA---TATCTCAATACTTTTTAAAATTAGTACATAAAATAA-GTTAATTAAAAACAGTACTCAGATGTGACTAAAAGATTGGTGTTTTACTGTTTTCAGTTATCCTCCACATGTGTGAGTGTGGCATTTCCGATCTCAGCTCACCAC-----CAGGTGAGCCTCGAAGGCCATACCTGGAT
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3416735 415 -   3831555 Gt--gagtgaatctgaaaatcattctctgaggcaaaacaggaaagagtatatactatacagttatgtttgtgcaacattcagagcaggcaaaataaatctcatctgagggaaggggagtatcctggctgcaagtaccaaggggcacagggatctttctgggtgacagaaatgatctacatGATGAACAGGTTACCTGTTAAATTCACTGAAACAAACAACATGCAACATTTTATCACAATTAAA---TATCTCGATACTTTTTAAAATTCGTACATAAAATAA-GTTAATTAAAAACAGTACTTGGATGTGACTAAAAGTTTGGTGTTTTACTATTTTCAGTTATCCTCCACGTGTGT--GTGTGGCATTTCTGATCTCAGCTCACCACCAGGTCAGGTGTGCCTCTAAGGCCATACCTGGAT
i aotNan1.NW_018503298v1       I 1 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          127142 1065 +    138091 M
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=79139.000000
s hg38.chr15_KI270851v1_alt       125620 16 +    263054 CTCTGCAGTAATGGCT
s panTro5.chr15                  9382562 16 +  83230942 CTCTGCAGTACTGGCT
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25868042 16 +  99763055 CTCTGCAGTACTGGCT
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           26796 16 +    551209 CTCTGCAGTAATGGCT
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     16014 16 +     18337 CTCTGCAGTAATGGCT
i macFas5.chr7_KE145676_random C 0 C 0
s cerAty1.NW_012002601v1         1563406 16 +   1584492 CTCTGCAGTAATGGCT
i cerAty1.NW_012002601v1       C 0 C 0
s chlSab2.chr26                  4268803 16 -  58131712 CTCTGCAGTAATGGCT
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3996093 16 +   4457520 CTCTGCAGTAATGGCT
i colAng1.NW_012115278v1       C 0 C 0
s saiBol1.JH378292               2356618 16 +   2682657 CTCTGCAGTAATGGCT
i saiBol1.JH378292             C 0 C 0
s cebCap1.NW_016107707v1         1734828 16 +   2086007 CTCTGCAGTGATGGCT
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3417150 16 -   3831555 CTCTGCAGTAATGGCT
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          127142 1065 +    138091 M
e macNem1.NW_012011934v1         1901343  0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e calJac3.chr6                   3913157 398 + 158406734 M

a score=809755.000000
s hg38.chr15_KI270851v1_alt       125636 146 +    263054 GCGTGTAAGGCTGACTCCAACCCTCCATCAGCCATCAAGCTGCCCACCAGAAGATCAATCACCAATCGATGACCTGGACTTATGTTCACTTCATTGCCTGAAACTGAAATAGAAA----GTCTGTGCCAATTTGAGTGAAACGCCATCCC
s panTro5.chr15                  9382578 146 +  83230942 GCATGTAAGGCTGACTCCAACCCTCCATCAGCCATCAAGCTGCCCACCAGAAGATCAATCACCAATCGATGACCTGGACTTATGTTCACTTCATTGCCTGAAACTGAAATAGAAA----GTGTGTGCCAATTTGAGTGAAACGCCATCCC
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25868058 146 +  99763055 GCATGTAAGGCTGACTCCAACCCTCCATCAGCCATCAAGCTGCCCACCAGAAGATCAATCACCAATCGATGACCTGGACTTATGTTCACTTCATTGCCTGAAACTGAAATAGAAA----GTGTGTGCCAATTTGAGCGAAACGCCATCCC
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           26812 146 +    551209 GCGTATAAGGCTGACTCCAACCCTCCAGCAGCCATCAAGCTGCCCACCAGAAGATCAATCACCAATCGATGACCTGGACTTATGTTCACTTCATTGCCTGAAACTGAAATAGAAA----GTGTGTGCCAATTTGAGTGAAACGCCATCCC
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     16030 146 +     18337 GCGTGTAAGGCTGACTCCAACCCTCCAGCAGTCATCAAGCTGCCCACCAGAAGATCACTCATGAATTGACAACCTCGACTTATGTTCACGTCATTGCCTGAAACTGAAAGAGAAA----GTGTGTGCCAATTTGAGTGAAACGCCATCCT
i macFas5.chr7_KE145676_random C 0 C 0
s cerAty1.NW_012002601v1         1563422 146 +   1584492 GCGTATAAGGCTGACTCCAACCCTCCAGCAGCCATCAAGCTGCCCACCAGAAGATCACTCATGAATTGACAACCTCGACTTATGTTCACGTCATTGCCTGAAACTGAAATAGAAA----GTGTGTGCCAATTTGAGTGAAACGCCATCCC
i cerAty1.NW_012002601v1       C 0 C 0
s chlSab2.chr26                  4268819 146 -  58131712 GCGTGTAAAGCTGACTCCAACCCTCCATCAGCCATCAAGCTGCCCACCAGAAGATCAATCATGAATCGACGACCTGGACTTATGTTCACGTCATTGCCTGAAACTGAAATAGAAA----GTGTGTGCCAATTTGAGTGAAACGCCATCCC
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3996109 146 +   4457520 GCGTGTAAGGCTGACTCCAACCCTCCATCAGCCATCAAGCTGCCCACCAGAAGATCAATCATGAATCGACGACCTGGACTTATGTTCACGTCATTGCCTGAAACTGAAATAGAAA----GTGTGTGCCAATTTGAGTGAAACGCCATCAC
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3913555 150 + 158406734 GCATGTAAGGCTGACTCCAACCCTCCGTCAGCCATCAAGCTGCCCACCAGAAGATCAATCATGAATCGACGACCTGGACTTATGTTCACATCATTGCCTGAAACTGAAACAGACAAAGCGTGTGTGCCAATCTGAGTGAAACACCATCTC
i calJac3.chr6                 M 398 C 0
s saiBol1.JH378292               2356634 150 +   2682657 GCATGTAAGGCTGACTCCAACCCTCCGTCAGCCATCAAGCTGCCCACCAGAAGATCAATCATGAATCGACGACCTGGACTTATGTTCACGTCACTGCCTGAAACTGAAATAGACGAAGTGTGTGTGCCAATCTGAGTGAAACACCGTCTC
i saiBol1.JH378292             C 0 C 0
s cebCap1.NW_016107707v1         1734844 150 +   2086007 GCATGTAAGGCTGACTCCAACCCTCCGTCAGCCATCAAGCTGCCCACCAGAAGATCAATCATGAATCGACGGCCTGGACTTATGTTCACGTCACTGCCTGAAACTGAAATAGACAAAGTGTGTGTGCCAATCTGAGTGAAACACCATCTC
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3417166 150 -   3831555 GCATGTAAGGCTGACTCCAACCCTCCATCAGCCATCAAGCTGCCCACCAGAAGATCAATCATGAATCGACGACCTGGACTTATGTTCACGTCATTGCCTGAAACTGAAATAGACAAAGTGTGTGTGCCAATCTGAGTGAAACAGCATCTC
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          127142 1065 +    138091 M
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=2039389.000000
s hg38.chr15_KI270851v1_alt       125782 314 +    263054 CTCCCAGCACCCTGACCCATGCCCTCTCCTGTTCCTTCCCCGAGCCCACCTCCACAGGACAGGAGAGC--AGAGTGCCCGGGCCTGCTTCTCAGCGGTGGGCAACAGCATGGACCAGCCGCTCTGCAGCATGGCCTGGGAGGCCGACTGCACGGTGCTCAGCACGTCTGCGCTGCTTGCCAGGGTCACCACCTTCTGCTTCAGGCTGTTCAGGAAGACGCTGCCCAGACCTAAACCAAGGAATTCCAGGTCAACCTGGTGACTAATGGCAGCATGCAACTGAAAGGAGAAAAACAATTTTCACTTAGAACCCCTAA
s panTro5.chr15                  9382724 314 +  83230942 CTCCCAGCACCCTGACCCATGCCCTCTCCTGTTCCTTCCCCGAGCCCACCTCCGCAGGGCAGGAGAGC--AGAGTGCCCGGGCCTGCTTCTCAGCGGTGGGCAACAGCATGGACCAGCCGCTCTGCAGCACGGCCTGGGAGGCCGACTGCATGGTGCTCAGCACGTCTGCGCTGCTTGCTAGGGTCACCACCGTCTGCTTCAGGCTGTTCAGGAAGACGCTGCCCAGACCTAAACCAAGGAATTCCAGGTCAACCTGGTGACTAATGGCAGCATGCAACTGAAAGGAGAAAAACAATTTTCACTTAGAACCCCTAA
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25868204 314 +  99763055 CTCCCAGCACCCTGACCCATGCCCTCTCCTGTTCCTTCCCCGAGCCCACCTCCGCAGGGCAGGAGAGC--AGAGTGCCCGGGCCTGCTTCTCAGCGGTGGGCAACAGCATGGACCAGCCGCTCTGCAGCATGGCCTGGGAGGCCGACTGCACGGTGCTCAGCACGTCTGCGCTGCTTGCTAGGGTCACCACCGTCTGCTTCAGGCTGTTCAGGAAGACGCTGCCCAGACCTAAACCAAGGAATTCCAGGTCAACCTGGTGACTAATGGCAGCATGCAACTGAAAGGAGAAAAACAATTTTCACTTAGAACCCCTAA
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           26958 314 +    551209 CTCCCAGCACCCTGACCCATGCCCTCTCCTGTTCCTTCCCCGAGCCCACCTCCGCAGGGCAGGAGAGC--AGAGTGCCTGGGCCTGCTTCTCGGCGGTGGGCAACAGCATGGACCAGCCGCTCTGCAGCATGGCCTGGGAGGCCGACTGCACCATGCTCAGCACGTCTGCGCTGCTTGCCAGGGTCACCACTGTCTGCTTCAGGCTGTTCAGGAAGACGCTGCCCAGACCTAAACCAAGGAATTCCAGGTCAACCTGGTGACTAATGGCAGCATGCAACTGAAAGGAGAAAAACAATTTTCGCTTAGAACCCCTAA
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     16176 315 +     18337 CTCCCAGCACCCTGACCCATGCCCTCTCCTGTTCCTTCCCCAAGCCCACCTGCGCAGGGCAGGGGAGCAGAGAGTGCCC-GGCCCGCTCCTCGGCGCTGGGCAGCAGCACGGACAAGCCGCTCTGCAGCACGGCCTGGGCGGCCGACTGCACGGTGCTCAGCACGCCCGCATTGCTGGCCAGGGTCACCACCGTCTGCTTCAGGCTGTTCAGGAGGTCGCTGCCCAGACCTAAATCAAACAATTCTGGGTCAATCTGGTGACTAATGGCAGCATGCAACTGACAGGAGAAAAATAATTTTCACTTAGAACCCCTAA
i macFas5.chr7_KE145676_random C 0 I 303
s cerAty1.NW_012002601v1         1563568 316 +   1584492 CTCCCAGCACCGTGACCCATGCCCTCTCCTGTTCCTTCCCCAAGCCCACCTGCGCAGGGCAGGGGAGCAGAGAGTGCCCGGGCCCGCTCCTCGGCGCTGGGCAGCAGCACGGACCAGCCGCTCTGCGGCACGGCCTGGGCGGACGACTGCATGGTGCTCAGCACGCCCGCGCTGCTGGCCAGGGTCACCACCGTCTGCTTCAGGCTGTTCAGGAGAACGCTGCCCAGACCTAAATCAAACAATTCTGGGTCAACCTGGTGACTAATGGCAGCATGCAACTGACAGGAGAAAAACAATTTTCACTTAGAACCCCTCA
i cerAty1.NW_012002601v1       C 0 I 1999
s chlSab2.chr26                  4268965 316 -  58131712 CTCCCAGCACCCCGACCCATGCCCTCTCCTGTTCCTTCCCCAAGCCCACCTGCGCAGGGCAGGAGAGCAGAGAGTGCCCGGGCCCGCTCCTCGGCAGTGGGCAGCAGCACGGACCAGCCGCTCTGCAGCACGGACTGGGCGGCCGACTGCACGGTGCTCAGCACGCCCGCGCTGCTGGCCAGGGTCACCACCGTCTGCTTCAGGCTGTTCAGGAGGACACTGCCCAGACCTAAACCAAGGAATTCCGGGTCAACCTGGTGACTAATGGCAGCATGCAACTGAAAGGAGAAAAACAATTTTCACTTAGAACCCCTAA
i chlSab2.chr26                C 0 C 0
s manLeu1.NW_012101289v1          128207 316 +    138091 CTCCCAGCACCGTGACCCATGCCCTCTCCTGTTCCTTCCCCAAGCCCACCTGCGCAGGGCAGGGGAGCAGAGAGTGCCCGGGCCTGCTCCTTGGCGCTGGGCAGCAGCACGGACAAGCCGCTCTGTGGCACGGCCTGGGCGGCCTACTGCACAGTGCTCAGCACGCACGCATTGCTGGCCAGGGTCACCACTGTCTGCTTCAGGCTGTTCAGGAGGACGCTGCCCAGACCTAAATCAAACAATTCTGGGTCAACCTGGTGACTAATGGCAGCATGCAACTGACAGGAGAAAAACAATTTTCACTTAGAACCCCTCA
i manLeu1.NW_012101289v1       M 1065 C 0
s colAng1.NW_012115278v1         3996255 315 +   4457520 CTCCCAGCACC-TGACCCATGCCCTCTCCTGTTCCTTCCCCAAGCCCACCTGCGCAGGGCAGGAGAGCAGAGAGTGCCCGGGCCCGCTCCTCGGCGGTGGGCAGCAGCACGGACCAGCCGCTCTGCAGCACGGACTGGGCGGCCGACTGCACGGTGCTCAGCACGCCCGCGCTGCTGGCCAGGGTCACCACCGTCTGCTTCAGGCTGTTCAGGAGGACGCTGCCCAGACCTAAACCAAGGAATTCCGGGTCAACCTGGTGACTAATGGCAGCATGCAACTGAAAGGAGAAAAACAATTTTCACTTAGAAGCCCTAA
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3913705 315 + 158406734 CTCCCAGCATCCTGACCCG-AACCTCTGCTGTTCCTTCCCCAGTCCCACCTGCACAGGGCAGGAGAGCAGAGAGTGCCCGGGCCCGCTCCTCCGCGGTGGGCAGCAGCACAGACCAGCCACTCTGCAGCACGGCCTGGGCAGCTGACTGCACAGTGCCCAGCACACCCGCGCTGCTGGCCAGGGTCACCACCGTCTGCTTCAGGCTGTTCAGGAGGACGCTGCCCAGACCTAAACCAAGGAATTCTGGATCAACCTGGTGACTAATGGCAGCATGCAACTGAAAGGAGAAAAACAATTTTCACTTAGGACCCCTAA
i calJac3.chr6                 C 0 C 0
s saiBol1.JH378292               2356784 316 +   2682657 CCCGCTGCATCCTGACCCGCAACCTCTGCTGTTCCTTCCCCAGTCCCACCTGCACAGGGCAGGAGAGCAGAGAGTGCCCGGGCCCGCTCCTCCGCGGTGGGCAGCAGCACGGACCAGCCACTCTGCAGCACGGCCTGGGCAGCTGACTGCACAGTGCCCAGCACACCCGCGCTGCTGGCCAGGGTCACCACCGTCTGCTTCAGGCTGTTCAGGAGGACGCTGCCCAGACCTAAACCAAGGAATTCCGGGTCAACCTGGTGACTAATGGCAGCATGCAACTGAAAGGAGAAAAACAATTTTCACTTAGAAGCCCTAA
i saiBol1.JH378292             C 0 C 0
s cebCap1.NW_016107707v1         1734994 315 +   2086007 CTCCCAGCATCCTGACCCGCAAACACTGCTGTTCCTTCCCCAGTCCCACCTGCACAGGGCAGGAGAGCAGAGAGTGCCCGGGCTCGCTCCTCTGCGGTGGGCAGCAGCACGGACCAGCCACTCTGCAGCACGGCCTGGGCAGCTGACTGCACAGTGCCCAGCACACCTGCGCTGCTGGCCAGGGTCACCACCGTCTGCTTCAGGCTGTTCAGGAGAACGCTGCCCAGACCTAAACCAAGGAATTCCGGGTCAACCTGGTGACTAATGGCAGCATGCAACTGAAAGGAGAAAAACAATTTTCACTTAGAA-CCCTAC
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3417316 316 -   3831555 CTCCCAGCATCCTGACCCACAACCTCTGCTGTTCCTTCCCCAGTCCCACCTGCACAGGGCAGGAGAGCAGAGAGTGCCCGGGCCCGCTCCTCCGCGGTGGGCAGCAGCACAGACCAGCCACTCTGCAGCACGGCCTGGGCAGCTGACTGCACAGTGCCCAGCACACCCGCGCTGCTGGCTAGGGTCACCACCGTCTGCTTCAGGCTGTTCAGGAGGACGCTGCCCAGACCTAAACCAAGGAATTCCGGGTCAACCTGGTGACTAATGGCAGCATGCAACTGAAAGGAGAAAAACAATTTTCACTTAGAACCCCTAA
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=95337.000000
s hg38.chr15_KI270851v1_alt       126096 15 +    263054 AAATGAGTGAATTTC
s panTro5.chr15                  9383038 15 +  83230942 AAATGAGTGAATTTC
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25868518 15 +  99763055 AAATGAGTGAATTTC
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           27272 15 +    551209 AAATGAGTGAATTTC
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     16794 15 +     18337 AAATGAGTGAATTTC
i macFas5.chr7_KE145676_random I 303 C 0
s cerAty1.NW_012002601v1         1565883 15 +   1584492 AAATGAGTGAATTTC
i cerAty1.NW_012002601v1       I 1999 C 0
s chlSab2.chr26                  4269281 15 -  58131712 AAATGAATGAATTTC
i chlSab2.chr26                C 0 C 0
s manLeu1.NW_012101289v1          128523 15 +    138091 AAATGAGTGAAtttc
i manLeu1.NW_012101289v1       C 0 I 369
s colAng1.NW_012115278v1         3996570 15 +   4457520 AAATGAATGAATTTC
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3914020 15 + 158406734 AAAGGAATGAATTTC
i calJac3.chr6                 C 0 C 0
s saiBol1.JH378292               2357100 15 +   2682657 AAACGAATGAATTTC
i saiBol1.JH378292             C 0 C 0
s cebCap1.NW_016107707v1         1735309 15 +   2086007 AAACAAATGAATTTC
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3417632 15 -   3831555 AAAGGAATGAATTTC
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e macNem1.NW_012011934v1         1901343  0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=584890.000000
s hg38.chr15_KI270851v1_alt       126111 115 +    263054 AAAGTCTTATTAAACACTGAATAAAAGTCAATTTGAAGTATTATTTAAATAGACAAAATAACTTCTCAGTTTACGTATTTTTAAAAACTGGAC---TAAAAAAACTCTTACCCACAAT
s panTro5.chr15                  9383053 115 +  83230942 AAAGTCTTATTAAACACTGAATAAAAGTCAATTTGAAGTATTATTTAAATAGACAAAATAACTTCTCAGTTTATGTATTTTTAAAAACTGGAC---TAAAAAAACTCTTACCCACAAT
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25868533 115 +  99763055 AAAGTCTTATTAAACACTGAATAAAAGTCAATTTGAAGTATTATTTAAATAGACAAAATAACTTCTCAGTTTATGTATTTTTAAAAACTGGAC---TAAAAAATCTCTTACCCACAAT
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           27287 115 +    551209 AAAGTCTTATTAAACACTGAATAAAAGTCAATTTGAAGTATTATTTAAATAGACAAAATAACTTCTCAGTTTACGTATTTTTAAAAACTGGAC---TAAAAAAACTCTTACCCACAAT
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     16809 115 +     18337 AAAGTCTTATTAAACACTGAATAAAACTCACTTTGAAGTATTATTTAAATAGATAAAGTAACTTCTCAGTTTATGTATTTTTAAAAACCGGAC---CAGAAAACCTCTTACCCACAAT
i macFas5.chr7_KE145676_random C 0 C 0
s cerAty1.NW_012002601v1         1565898 115 +   1584492 AAAGTCTTATTAAACACTGAATAAAACTCACTTTGAAGTATTATTTAAATAGATAAAGTAACTTCTCAGTTTATGTATTTTTAAAAACTGGAC---CAGAAAACCTCTTACCCACAAT
i cerAty1.NW_012002601v1       C 0 C 0
s chlSab2.chr26                  4269296 110 -  58131712 AAAGTCTTATTAAACACTGAATAAAACTTACTTTGAAGTATTATTTAAACAACCAAA-----TTCTCAGTTTATGTATTTTTAAAAACTGGAC---TAAAAAACCACTTACCCACAAT
i chlSab2.chr26                C 0 C 0
s colAng1.NW_012115278v1         3996585 113 +   4457520 AAAGTCTTATTAAACACTGAATAAAACTCACTTTGAAGTATTATTTAAATAACCAAC-----TTCTCAGTTTATGTATTTTTAAAAACTGGACTTTTAAAAAACCTCTTACCCACAAC
i colAng1.NW_012115278v1       C 0 C 0
s calJac3.chr6                   3914035 114 + 158406734 AAAGTCTTA-TAAACACTGAGTAAAACTCAATTTGAACTATTATTTAAATAGACAAAATAACTTCTCAGTTTACGTATTTTTAAAAACTGGAC---TAAAAAAACTCTTACCCACAAT
i calJac3.chr6                 C 0 C 0
s saiBol1.JH378292               2357115 114 +   2682657 AAAGTCTTA-TAAACACTGAGTAAAACTTACTTTGAACTCTTATTTAAATAGACAAAATAACTTCTCAGTTTATGTATTTTTAAAAACTGGAC---TAAAAAAACTCTTACCCACGAT
i saiBol1.JH378292             C 0 M 638
s cebCap1.NW_016107707v1         1735324 114 +   2086007 AAAGTCTTA-TAAACACTGAGTAAAACTCCATCTGAACTATTATTTAAATAGACAAAATAACTTCTCAGTTTACGTATTTTTAAAAACTGGAC---TTGAAAAACTCTTACCCACCAT
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3417647 114 -   3831555 AAAGTCTTA-TAAACACTGAGTAAAACTCAATTTGAACTATTATTTAAATAGACAAAATAACTTCTCAGTTTATGTATTTTTAAAAACTGGAC---TAAAAAAACTCTTACCCACAAC
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          128538 369 +    138091 I
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I

a score=700111.000000
s hg38.chr15_KI270851v1_alt       126226 176 +    263054 AGTTGAAATATTTTCT-AGAGGAATTTTTTTTAACCCCGCTATGAACACATATATGGAAAAGCTCAAGATGAGCAGAAGAGCTAAACAACTAGCAACAGCAACCTCCAC----CCCGCCCCAACAATCTGCACCAAACACAGAAATAATGGCTACAATGTAACCACAAAAGCTGCCACAGg
s panTro5.chr15                  9383168 176 +  83230942 AGCTGAAGTATTTTCT-AGAGGAATTTTTTTTAACCCCACTATGAACACATATATGGAAAAGCTCAAGATGAGCAGAAGAGCTAAACTACTAGCAACAGCAACCTCCAC----CCCGCCCCAACAATCTGCACCAAACACAGAAATAATGGCTACAATGTAACCACAAAAGCTGCCACAGg
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25868648 176 +  99763055 AGCTGAAGTATTTTCT-AGAGGAATTTTTTTTAACCCCACTATGAACACATATATGGAAAAGCTCAAGATGAGCAGAAGAGCTAAACAACTAGCAACAGCAACCTCCAC----CCCGCCCCAACAATCTGCACCAAACACAGAAATAATGGCTACAATGTAACCACAAAAGCTGCCACAGg
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           27402 176 +    551209 AGTTGAAGTATTTTCT-AGAGGAATTTTTTTTAACCCCACTATGAATACATATATGGAAAAGCTCAAGATGAGCAGAAGAGCTAAACAACTAGCAACAGCAACCTCCAC----CCCGCCCCAACAATCTGCACCAAACACAGAAATAATCGCTACAATGTAACCACAAAAGCTGCCACAGg
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     16924 177 +     18337 AGTTGAAGTATTTTCT-AGAGGAA---TTTTCAGTCCCACCATGAACACGTATATGGAAAAGCTCAAGATGAGCAGAGGAGCTAAACAACCAGCAATAGCAACCCCCGCCCCGCCCGCCCCGACAATCCCCACCAAACACAGAAAGAAAGGCTACGATGTAACCAAAAAAGCGGCCACAGg
i macFas5.chr7_KE145676_random C 0 C 0
s cerAty1.NW_012002601v1         1566013 177 +   1584492 AGTTGAAGTATTTTCT-AGAGGAA---TTTTCAGTCCCACCATGGACACGTATATGGAAGAGCTCACGATGAGCAGAGGAGCTAAACAACCAGCAACAGCAACTCCCACCCCGCCCGCCCCGACAATCCGCACCAAACACAGAAAGAAAGGCTACGATGTAACCAAAAAAGCGGCCACAGg
i cerAty1.NW_012002601v1       C 0 C 0
s chlSab2.chr26                  4269406 175 -  58131712 AGCTTAAGTATTTTCT-AGAGGAA-TTTTTTTAACCCCACTATGAACATGTATATGGAAAAGCTCAAGATGAGCAGAAGAGCTAAACAACTAACAACAGCAACCTCCAC----CCCACCCCAACAATCTGCACCAAACACAGAAATAATGGCCACAATGTAACCATAAAAGCTGCCATAgg
i chlSab2.chr26                C 0 I 239
s colAng1.NW_012115278v1         3996698 179 +   4457520 AGTTGAAGCATTTCCT-AGAGGAA-TTTTTATAACCCCACTACGAACATGTATATGGAAAAGCTCAAGATGAGCAGAAGAGCTAAACAACCAGCAACAGCAACCTCCGCCCCGCCCGCCCCAACAATCTGCACCAAACACAGAAATAACGGCCACAATGTAACCAAAAAAGCTGCCACAgg
i colAng1.NW_012115278v1       C 0 I 238
s calJac3.chr6                   3914149 174 + 158406734 AGTTGAAGTATTTTCTAAGAGGAA-CTCTTTTAACTCCACTATAAACATGTATACAGAAAAGCTCAAGATCAGCAGAAGAGCTGAACAACTAGCAACAACCACCTCCATC---CCCGCCCCAACA--CTGCACCAAACATGGAAATAACAGCTACAACGTCACCAAAAAAGTTGCCACAG-
i calJac3.chr6                 C 0 C 0
s cebCap1.NW_016107707v1         1735438 176 +   2086007 AGCTGAAGTATTTTCTAAGAGGAA-CTCTTCTAACTCCACTATAAACATGTACACAGAAAAGCTCAAGATCAGCAGATGAGCTAAACAACCAGCAACAACAACCTCCATC---CCCGCCCCAACGATCTGCACCAAACACAGAAATAACGGCTACAACGTCACCAAAACAGTTGCCACAG-
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3417761 176 -   3831555 AGTTGAAGTATTTTCTAAGAGGAA-CTCTTTTAACTCCACTATAAACATGTATACAGAAAAGCTCAAGATCAGCAGAAGAGCTAAATAACTAGCAACAACAACCCCCACC---CCTGCCCCAACAATCTGCACCAAACACAGAAATAACGGCTACAACGTCACCAGAAAAGTTGCCACAG-
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1          128538 369 +    138091 I
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e saiBol1.JH378292               2357229 638 +   2682657 M

a score=91519.000000
s hg38.chr15_KI270851v1_alt       126402 41 +    263054 cggtggctcatgcctgtcatcccagcactttgggaggccga
s panTro5.chr15                  9383344 41 +  83230942 tggtggctcatgcctgtaatcccagcactttgggaggccga
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25868824 41 +  99763055 cggtggctcatgcctgtaatcccagcactttgggaggccga
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           27578 41 +    551209 cggtggctcatgcctgtaatcccagcactttgggaggccga
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     17101 41 +     18337 cggtggcttatgcctgtaaccccaggactttgggaggccga
i macFas5.chr7_KE145676_random C 0 C 0
s cerAty1.NW_012002601v1         1566190 41 +   1584492 cggtggcttatgcctgtaaccccaggactttgggaggccga
i cerAty1.NW_012002601v1       C 0 I 804
s calJac3.chr6                   3914323 30 + 158406734 ----------TG-ctgtaataccagcactttgggaggctga
i calJac3.chr6                 C 0 C 0
s cebCap1.NW_016107707v1         1735614 30 +   2086007 ----------TG-ctgtaataccagcactttgggaggccaa
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3417937 30 -   3831555 ----------TG-ctgtaataccagcactttgggaggtcga
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e colAng1.NW_012115278v1         3996877 238 +   4457520 I
e manLeu1.NW_012101289v1          128538 369 +    138091 I
e macNem1.NW_012011934v1         1901343  0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e chlSab2.chr26                  4269581 239 -  58131712 I
e saiBol1.JH378292               2357229 638 +   2682657 M

a score=867342.000000
s hg38.chr15_KI270851v1_alt       126443 411 +    263054 cg-ggaaagctcacttgagatcaggagttcaagatcagcctggccaacatgatgaaaccccatctctataaaaaaatcagccgggtgtgatggtacacacctgtagtcccagctacttgggaggctgaggcaggagaatcactggaacctggcag----------------gccaagactgtaccactgca--------ttccagcctgggtgacaaagtgacaccctgtcta------------------------------------aaaaaaaaaaaGAGCTGCTAAAAATTAGACTGCGGAGCTGAG---AGTACACAGGGAAACTCCTCAAGTGCAAAACCAAAATTCACATGGGCACACACAGCAGGAGTCAAGAGGTTCCGGGCTCTGAAAGCAGAGCCAAGCCGCCAGGCTTCAGCACAACCTCCCACACGGGAATGCACACAAGGACCCACTGAACCCGAGCTTCC
s panTro5.chr15                  9383385 412 +  83230942 catggaaagctcacttgagatcaggagttcaagatcagcctggccaacatgatgaaaccccatctctacaaaaaaatcagccgggtgtgatggtacacacctgtagtcccagctacttgggaggctgaggcaggagaatcacttgaacctggcag----------------gccaagactgtaccactgca--------ttccagcctgggtgacaaagtgacaccctgtcta------------------------------------aaaaaaaaaaaGAGCTGCTAAAAATTAGACTGCGGAGCTGAG---AGTACACAGGGAAACTCCTCAAGTGCAAAACCAAAATTCACATGGGCACACACAGCAGGAGTCAAGAGGTTCCGGGCTCTGAAAGCAGAGCCAAGCCGCCAGGCTTCAGCACAACCTCCCACACGGGAATGCACACAAGGACCCACTGAACCCGAGCTTCC
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25868865 412 +  99763055 cgtggaaagctcacttgagatcaggagttcaagatcagcctggccaacatgatgaaaccccatctctacaaaaaaatcagccgggtgtgatggtacacacctgtagtcccagctacttgggaggctgaggcaggagaatcacttgaacctggcag----------------gccaagactgtaccactgca--------ttccagcctgggtgacaaagtgacaccctgtcta------------------------------------aaaaaaaaaaaGAGCTGCTAAAAATTAGACTGCGGAGCTGAG---AGTACACAGGGAAACTCCTCAAGTGCAAAACCAAAATTCACATGGGCACACACAGCAGGAATCAAGAGGTTCCGGGCTCTGAAAGCAGAGCCAAGCCGCCAGGCTTCAGCACAACCTCCCACACGGGAATGCACACAAGGACCCACTGAACCCGAGCTTCC
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           27619 412 +    551209 cgtggaaagctcacttgagatcaggagttcaagatcagcctggccaacatgatgaaaccccatctctataaaaaaatcagccgggtgtgatggtacacacctgtagtcccagctacttgggaggctgaggcaagagaatcacttgaacctggcag----------------gccaagactgtaccactgca--------ttccagcctgggtgacaaagtgacaccctgtcta------------------------------------aaaaaaaaaaaGAGCTGCTAAAAATTAGACTGCGGAGCTGAG---AGTACACAGGGAAACTCCTCAAGTGCAAAACCAAAATTCACATGGGCACACACAGCAGGAGTCAAGAGGTTCCGGGCTCTGAAAGCAGAGCCAAGCCGCCAGGCTTCAGCACAACCTCCCACACGGGAATGCACACAAGGACCCACTGAACCCAAGCTTCC
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     17142 407 +     18337 ggtgggaagatcacttgagat--ggagttcaagaccagcctggacaacatggtgaaaccccatgtctat-aaaaaatcacctgggcatgatggtacacacctgtagtcccagctacttgggagtctgaggcaggagaatcacttgaacctgggag----------------gccaagattacaccactgca--------ttccagcctgggtgacaaagtgagaccctgtctc------------------------------------aaTTTTTAAAA-AGCTGCTAAAAATTAGACTGCGGGGCTGAG---AGTACACAAGGAAATTCCTCAAGTGCAAAATC-GAACTCACACGGGCACAAACAGCAGGAGTCAAGAGGTTCCGGGCTCTGAAGGCAGAGCCGAGCCGCCAGGCTTCAGAACAACCTCCCACACGGGAATGCACACAAGGACCCACTGAACCCCAGCTTCC
i macFas5.chr7_KE145676_random C 0 C 0
s calJac3.chr6                   3914353 434 + 158406734 ggtgggatgatcacttgagctcaggagttcaagaccagcctggccaacatggtgaaaccccatctctat-aaaaaatcagct-ggcgtgatggtacacacctgtagttccaactacttgggaggctgaggcagg------acttgaacctggcaggtcaaggctgcaatgagccaagactgcatccctgcattctagccttccagcctgtgtgacaaagtgagaccctgtctc-------------------------------aaaaaaaaaaaaaaaaaaGCTGGT-AAAATTAGACTGCAGAGCTAAGAGTAGTACACAAGGAAACTCTTCAAGCACAAAACCAAAACTCACATGGGCACACACAGCCAGAGTCAAGA-GTCCTAGGCTCTGAAAGCAGCGCCAAGGCATTGGGCTTCAGAACTACCTCCCACATGGGAAAGCACACAAGGACCCACTGAACCCAAGCTTCC
i calJac3.chr6                 C 0 C 0
s cebCap1.NW_016107707v1         1735644 463 +   2086007 gctgggaagatcacttgagctcaggagttcaacaccagcctggccaacatggtgaaaccccatctctat-aaaaaatcagcc-ggcgtgatggtacacacctgtagtcccagctacttgggaggctgaggcagg------acttgaacctggcaggtcaaggctgcagtgagccaaaactgcaccactgcattctagccttccagcctgtgtgacaaggtgaggccctgtctcaaaaaaaaaacccgccaaaaaaaaagaaaagaaaaaaaaaaaaaaaaaaaCTGCTAAAAATTAGATTGCAGAGCTAAG---AGTATACAAGGAAACTCTTGAAGCACAAAACCAAAACTCACATGGGCACACACAGCAGGAGTCAAGA-GTCCTGGGCTCTGAAAGCAGAGCCAAGCCGTTGGGCTTCAGAACTACCTCCCACATGGGAATGCACACAAGGACCCACTAAACCTGAGCTTCC
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3417967 428 -   3831555 ggtgggacgatcacttgagctcaggtgttcaagaccagcctggccaacatggtgaaa-cccatctctat-aaaaaatcagcc-ggcgtgatggtacacacctgtagtcccagctacttgggaggctgaggcaag------acttgaacctggtaggtcaaggctgcagtgagccaagactgcaccactgcattctagccttccagcctgtgtgacaaagtgagaccctgtctc----------------------------------aaaaaaaaaaaaaaaGCTGCTAAAAATTAGATTGCAGAGCTAAG---AGTACACAAGGAAACTCTTCAAGCACAAAACCAAAACTCACATGGGCACACACAGCAGGAGTCAAGA-GTCCTGGGCTCTGAAAGCAAAGCCAAGCCGTTGGCCTTCAGAACTACCTCCCACATGGGAATGCACACAAGGACCCACTGAACCCGAGCTTCC
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e colAng1.NW_012115278v1         3996877 238 +   4457520 I
e manLeu1.NW_012101289v1          128538 369 +    138091 I
e cerAty1.NW_012002601v1         1566231 804 +   1584492 I
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e chlSab2.chr26                  4269581 239 -  58131712 I
e saiBol1.JH378292               2357229 638 +   2682657 M

a score=2047525.000000
s hg38.chr15_KI270851v1_alt       126854 769 +    263054 TGCAGAAGGCTGGGAGCCACTCAGGATCACCTGCCTGCCAGCCAACCGCAGCCAGGGGGCAACACACTGCCCGTCCCAGGCTCTGGGTAGCAAGAGGCCCCATGAG-AAATCAGAGACCCGGCCTTGCCCTGTGAGTAGAAGTGAAATCAAAAGCACACCACTCATCTAGGTATAGATATCACAGGTCAGGAAATGACCACCGAAACTCACCTGGAGTCTGTGAAACCTACAGAACCCTCAGGACCCCGGAGAGGCAAATGCAAAACCATACGCTGGGACACCTCGACAGCCTAAGACATACGCAAGGCCACGCCCCACAGCACTGACCAGAACAGACACATCACCGCAAACCAGGAGGGGCAGCAAACACCTGGGGCGCAACCACGCAAACGCCAGGATGCCACAGGTATGGTGATAAATGAGTGCTACAGAGGACT----AGAGGAGAAGCATGCTCCAGACCTCTGCTCAGTTCAttactgcaactaaacactacactcagttctgtacattctagaag-cagggcaaaaaggggaGGGGCTGGAAGAGGGAC---ATGACGGGTTGTTACA-AGAAACCAC--TGTAATAAAAGGGAAAAATTACTATGTCGAGAAAACCGTGGTTCTTGTCATTAAGTTAGAGGGTTTTATTACAAAGAC----AAAAGATGATGATCAAACACTTCAGCTTTAGTTTTGCTAGGGAGGAAGGCTTTTGTAGCTTTTATTGTGACCCTAACCACAGCCTTCATGGTGAGGAAAGGAAGGTATTGCTTTGG-
s panTro5.chr15                  9383797 769 +  83230942 TGCAGAAGGCTGGGAGCCACTCAGGATCACCTGCCTGCCAGCCAACCGCAGCCAGGGGGCAACACACTGCCCGTCCCAGGCTTTGGGTAGCAAGAGGCCCCATGAG-AAATCAGAGACCCGGCCTTGCCCTGTGAGTAGAAGTGAAATCAAAAGCACACCACTCATCTAGGTATAGATATCACAGGTCAGGAAATGACCACCCAAACTCACCTAGAGTCTGTGAAACCTACAGAACCCTCAGGACCCCGGAGAGGCAAATGCAAAACCATACGCTGGGACACCTCGACAGCCTAAGACATACACAAGGCCACGCCCCACAGCACCGACCAGAACAGACACATCACTGCAAACCAGGAGGGGCAGCAAACACCTGGGGCGCAACCACGCAAACGCCAGGATGCCACAGGCATGGTGATAAATGAGTGCTACAGAGGACT----AGAGGAGAAGCATGCTCCAGACCTTTGCTCAGTTCAttactgcaactaaacactacactcagttctgtacattctagaag-cagggcaaaaaggggaGGGGCTGGAAGAGGGAC---ATGACGGGTTGTTACA-AGAAACCAC--TGTAATAAAAGGGAAAAATTACTATGTCGAGAAAACCGTGGTTCTTGTCATTAAGTTAGAGGGTTTTATTACAAAGAC----AAAAGATGATGATCAAACACTTCAGCTTTAGTTTTGCTAGGGAGGAAGACTTTTGTAGCTTTTATTTTGACCCTAACCACAGCCTTCATGGTGAAGAAAGGAAGGTATTGCTTTGG-
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25869277 769 +  99763055 TGCAGAAGGCTGGGAGCCACTCAGGATCACCTGCCTGCCAGCCAACCGCAGCCAGGGGGCAACACACTGCCCGTCCCAGGCTTTGGGTAGCAAGAGGCCCCATGAG-AAATCAGAGACCCGGCCTTGCCCTGTGAGTAGAAGTGAAATCAAAAGCACACCACTCATCTAGGTATAGATATCACAGGTCAGGAAATGACCACCCAAACTCACCTAGAGTCTGTGAAACCTACAGAACCCTCAGGACCCCGGAGAGGCAAATGCAAAACCATACGCTGGGACACCTCGACAGCCTAAGACATACACAAGGCCACGCCCCACAGCACCGACCAGAACAGACACATCACTGCAAACCAGGAGGGGCAGCAAACACCTGGGGCGCAACCACGCAAACGCCAGGATGCCACAGGCATGGTGATAAATGAGTGCTACAGAGGACT----AGAGGAGAAGCATGCTCCAGACCTCTGCTCAGTTCAttactgcaactaaacactacactcagttctgtacattctagaag-cagggcaaaaaggggaGGGGCTGGAAGAGGGAC---ATGACGGGTTGTTACA-AGAAACCAC--TGTAATAAAAGGGAAAAATTACTATGTCGAGAAAACCGTGGTTCTTGTCATTAAGTTAGAGGGTTTTATTACAAAGAC----AAAAGATGATGATCAAACACTTCAGCTTTAGTTTTGCTAGGGAGGAAGACTTTTGTAGCTTTTATTTTGACCCTAACCACAGCCTTCATGGTGAGGAAAGGAAGGTATTGCTTTGG-
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           28031 774 +    551209 TGCAGAAGGCTGGGAGCCACTCAGGATCACCTGCCTGCCAGCCAACCGCAGCCAGGGGGCAACACACTGCCCGTCCCAGGCTTTGGGTAGCAAGAGGCCCCATGAG-AAATCAGAGACCCGGCCTTGCCCTGTGAGTAGAAGTGAAATCAAAAGCACACCACTCATCTAGGTATAGATATCACAGGTCAGGAAATGACCACCGAAACTCACCTAGAGTCTGTGAAACCCACAGAACCCTCAGGACCCTGGAGAGGCAAATGCAAAACCATACGCTGGGACACCTCGACAGCCTAAGACATACACAAGGCCATGCCCCACAGCACCGACCAGAACAGACACATCACTGCAAACCAGGAGGGGCAGCAAACACCTAGGGCGCACCCACACAAACGCCAGGACGCCACAGGCATGGTGATAAATGAGTGCCACAGAGGACT----AGAGGAGAAGCATGCTCCTGACCTCTGCTCAGTTCAttactgcaactaaacactacactcagttctgtacattctagaag-cagggcaaaaaggggaggggctggaagagggac---acgatgggctgttacacagaaaccac--tgtaataaaagggaaaaattactatgtcgagaaaaccgtggttcttgtcattaagttagagggttttattacAAAGATGAAGAAAAAATGATGATCAAACACTTCAGCTTTAGTTTTGCCAGGGAGGAAGACTTTCGTAGCTTTTATTTTGACCCTAACCACAGCCTTCATGGTGAGGAAAGGAAGGTATTGCTTTGG-
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     17549 775 +     18337 TGCAGAAGGCTGGGAGCCGCTCAGGATCACCTGCCTGCCAGCCACCCACAGCCAGGGCGCAACACACAG-CCGTCCCGGGCTTTGGGTAGCAAGAGACCCCACGAG-AAATCAGAGACCCGGCCTTGCCCTGTCAGTAGAAGTGAAATCAGAAACATATCGCTCATCTAGGTATAGATATCACAGGTCCGGAAATGAGCATCGAAACTCACCTACGGTCTGTGAAACCCACAGAACCCTCAGAACCCCGGAGAGGCAAATGCAAAACCAGACGCTGGGACACCTCGACAGCCTGAGACATACACAAGGCCACGCTCCACAGCACTGACCAGAACAGAAGCATCACTGCAAACCAGGAGGAGCAGCAAACACCAGGGG-GCACCCACGCAAACGCCAGGACGCCACAGGTATGGCGACACGTGAGTGCTACAGAGGACTGC-AGGAGGAGAAGCACGCTCCAAACCTCTGCTCAGTTCATCACTGCAACCAAACACTACACTCAGTTCTGTAGATTCTCGAAG-CAGGGCAAAAAGGGGAGGGGCTGGAAGAGGGAC---ATGATGGGTTGTTACACAGAAATCATTGTGTAATAAAAGGG--AAGTTACTATGTCGAGAAAACTGTGGTTCTTATCATTAAGTTATATGGTTTTATgacaaagacaaagaaaatatgatgatcaaagacTTCAGCTTTAGTTTTACCAGGAAGGAAGACTTTTGTAGCTTTTATTTTGACCGCAGCCATAACCTTCATGGTGAGGAAAGGAAGGTATTGCTGTAG-
i macFas5.chr7_KE145676_random C 0 I 1
s calJac3.chr6                   3914787 768 + 158406734 TGCAGAAGGCTGGGAGCCACTCCGAATCACCTGCCTGTCAGCCAGCCACAGCCCGGAGGCAACACATTGCCTGTCCCAGGCTTTGGATAGCAAGAGACCCTAG-AGAAAATCAGAGACCCAGCCCTGCCCTGTGAGTACAAGTGAAATCAGAAGCACACCACCCACCTAGGTATAGGTATCACAGGTCAGGATATGAGCATCATAATTCACCTAGAATCTGTGAAACCCACAGA---------GCCCCAGAGAGGCAAATGTAAAACCATCCTCTGGGATACCTCAACAGCCTAAGACACACACAAGGCCAGGCTCCACGGCACTAACCACAAGAGAAACATCATAGCAAACCAGGAGGAGCGGCAAACACCTGGTGCACACCCATGCAAATGCCATGACATCACAGGTAAGGTGATAAATGAGTGCTACAGAGGACCCT---GAGGAGAAGCACACTCCAAACCTCCGCTTATTTGATGACTGCAACTAAATACTACATTCAGTTGTGTGCATCCTACAAGCCAGGGCACAAAGGGGAAGGGCTGGAAGAGGGAC---ATGATGGCTTGTTACACAGAAATCATTGCATAATAAAAGGGAAAAATTACTATGTCGAGAAAAACTTGGTTCTTGTCATTAAGTTACCGGGTTTTATTACAAAGACAAAGAAAATATGATGATCAAAGATTTCAGCTTTAGTTTTACAAGGGA-GAAGACTTTTGTGGC-TTTTATTTGACCCTAGCTATAACCTTCCTGGTGAGGAAAGGAAGCAAATGCTGTAGG
i calJac3.chr6                 C 0 C 0
s saiBol1.JH378292               2357867 770 +   2682657 TGCAGAAGGCTGGGAGCCACTCAGAATCACCTGCCTGTCACCCAGCCACAGCCAGGAGGCAACATAGTGCCTGT-CCAGGCTCTGGATAGCAAGAGACCCTAC-AG-AAATCAGAGACGCAGCCCTGCCCTGTGAGTACAAGTGAAATCAAAAGCATACCACCCATCTAGGTATAGGTATCATAGGTCAGGAAATGAGCATCAAAATTCACCTAGAGTCTGTGAAACCCACAGA---------ACCCCAGAGAGGCAAATGTAGAACCATCCTCTGGGACACCTCGACAGCCTAAGACACACACAAGGCCACGCTCCACAGCACTAACCAGAAGAGAAACATCACTGCAAACCAGGCGGAGCGGCAAATACCTGCAGCACACCCATACAGATGCCATGACGCCACAGGTATGGTGATAAATGAGTGCTACAGAGGACCCTGAGGAGGAGAAGCGCACTCCAAA--TTCGCTCATTTCAttactgcaactaaatacgacattcagttgtgtgcgccctacaagccagggcacaaagggcaagggctggaagaggaacatgatgatgggttgttacacagaattcactgtgtaatcaaagggaaaaattactatgtcgagaaaaacttggttcttgtcattaagttacagggttttattataaagacaaagaaaatatgatgatcaaagatttcagctttagttttacaaggga-aaagacttttgtggc-tttattttgaccctagctataaccttcatggtgaggaaaggaaggtaatgctgtagg
i saiBol1.JH378292             M 638 C 0
s cebCap1.NW_016107707v1         1736107 767 +   2086007 TGCAGAAGGCTGGGAGCCATTCAGAATCACCTGCCTGTCAGCCAGCCTCAGCCAGGAGGCAACACAGTGCCTGTCCCAGGCTTTGGATAGCAAGAAACCCGAC-AG-AAATCAGAGACCCAGCCCTGCCCTGTGACTACAAGTGAAATCAAAAGCATATCACCCATCTAGGTATAGGTATCACAGGTCAGGAAATGAGCATCAAAATTCACCTAGAGTCTTTGAAACCCACAGA---------ACCCCAGAGAGGCAAATGTAAAACCATCCTTTGGGACACCTCGACAGTCT--GACACGCACAAGGCCACACTCCATGGCACTAACCAGAAGAGAAACATCACTGCAAACCAGGAGGAGCGGCAAACACCTGGGGCACACCCATGCAAATGCCATGACGCCACAGAT-TGGTGATAAATGAGTGCTACAGAGGACCCTGAGGAGGAGAAGCGCACTCCAAACCTCCGCTCATTTCAttactgcaactaaacactacattcagttgtgtgctccctataagccagggcacaaaggggaagggctggaagaggaac---atgatgggttgttacacagaaatcattgtgtaatcaaagggaaaaattactatgtcgagaaaaacttggttcttgtcattaagtcacagggttttattacAAAGACAAAGAAAACACGATCATCAAAGATTCCAGCTTTAGTTTTACAAGGGA-GAAGAGTTTTGTGGC-TTTATTTTGACCCTAGCTATCACCTTCACGGTGAGGAAAGGAAGGCAATGCTGTAGG
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3418395 770 -   3831555 TGCAGATGGCTGGGAACCACTCAGAATCACCTGCCTGTCAGCCAGCCATAGCCAGGAGGCAACACACTGCCTGTCCCAGGCTTTGGATAGCAAGAGACCCTAC-AG-AAATCAGAGAGCCAGCCCTGCCCAGTGAGTACAAGTGAAATCAAAAGCATACCACCCATGTAGGTGTAGGTATGACAGGTCAGGAAATGAACATCAAAATTCACCTAGAGTCTGTGAAACCCACAGA---------ACCCCAGAGAGGCAAATGTAAAACCATCCTCTGGGACACCTCGACAGCCTAAGACACACACAAGGCCATGCTCCACGGCACTAACCAGAAGAGAAACATCACTGCAAACCAGAAGGGGCAGCAAACACCTGGGGCACAGCCACGCAAATGCCATGACGCCACAGGTATGGTGGTAAACGAGTGCTACAAAGGACACTGAGGAGGAGAAGCGTCTTCCAAACCTTCGCTCATTGCAttaccgcaactaaatactacattcagctgtgtgtatcccacaagccagggcacaaaggggaagggctggaaaagggac---atgatgggttgttacacagaaatcattgtgtaataaaaggg-aaaattactatgaagaggaaaacttggttcttgttattaagttacagggttttattacAAAGACAAAGAAAATATGATGATCGAAGATTTCAGCTTTAGTTTTACAAGGGA-GAAGACTTTTGTGGCTTTTATTTTGACCCTAGCTATAACCTTCACGGTGAGGAAAGGAAGGTAATGCTGTAGG
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e colAng1.NW_012115278v1         3996877 238 +   4457520 I
e manLeu1.NW_012101289v1          128538 369 +    138091 I
e cerAty1.NW_012002601v1         1566231 804 +   1584492 I
e macNem1.NW_012011934v1         1901343   0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e chlSab2.chr26                  4269581 239 -  58131712 I

a score=45994.000000
s hg38.chr15_KI270851v1_alt       127623 12 +    263054 GAGCCGAGCTTA
s panTro5.chr15                  9384566 12 +  83230942 GAGCCGAGCTTA
i panTro5.chr15                C 0 C 0
s panPan2.chr15                 25870046 12 +  99763055 GAGCTGAGCTTA
i panPan2.chr15                C 0 C 0
s gorGor5.CYUI01015853v1           28805 12 +    551209 GAGCTGAGCTTA
i gorGor5.CYUI01015853v1       C 0 C 0
s macFas5.chr7_KE145676_random     18325 12 +     18337 GAGCCGAGCTTA
i macFas5.chr7_KE145676_random I 1 N 0
s cerAty1.NW_012002601v1         1567035 12 +   1584492 GAGCCGAGCTTA
i cerAty1.NW_012002601v1       I 804 C 0
s calJac3.chr6                   3915555 12 + 158406734 GAGCTGAGCTTA
i calJac3.chr6                 C 0 C 0
s saiBol1.JH378292               2358637 12 +   2682657 gagccgagctTA
i saiBol1.JH378292             C 0 C 0
s cebCap1.NW_016107707v1         1736874 12 +   2086007 GAGCCAGGCTTA
i cebCap1.NW_016107707v1       C 0 C 0
s aotNan1.NW_018503298v1         3419165 12 -   3831555 GAGCCAAGCTTA
i aotNan1.NW_018503298v1       C 0 C 0
e nomLeu3.chr6                  70882857 31487 + 121039945 I
e colAng1.NW_012115278v1         3996877 238 +   4457520 I
e manLeu1.NW_012101289v1          128538 369 +    138091 I
e macNem1.NW_012011934v1         1901343  0 -   2379783 I
e rheMac8.chr7                 164154759 61851 - 169600520 I
e chlSab2.chr26                  4269581 239 -  58131712 I

a score=295473.000000
s hg38.chr15_KI270851v1_alt    127635 114 +    263054 CTGAGTAGATcaagcttgttcaacccacggcccgagggcagcatgtggcccagggcagctttgaatgtggcccaaagtaaaatttcttaaaacatcatgagatat-ttttgggat
s panTro5.chr15               9384578 114 +  83230942 CTGAGTAGATcaagcttgttcaacccacggcccgagggcagcatgtggcccaggacagctttgaatgtggcccaaagtaaaatttcttaaaacatcatgagatat-ttttgggat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25870058 114 +  99763055 CTGAGTAGATcaagcttgttcaacccacggcccgagggcagcatgtggcccaggacagctttgaatgtggcccaaagtaaaatttcttaaaacatcatgagatat-ttttgggat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        28817 114 +    551209 CTGAGTAGATcaagcttgttcaacccacggcccgagggcagcatgtggcccaggacagctttgaatgtggcccaaagtaaaatttcttaaaacatcatgagatat-ttttgggat
i gorGor5.CYUI01015853v1    C 0 C 0
s cerAty1.NW_012002601v1      1567047 115 +   1584492 CTGAGTAGATcaggtttgtccaacccacagcctgagggcagcacgtggcccaggacggctttgaatgcggtccaaagtaaactttcttaaaacattatgagatatgttttgcgat
i cerAty1.NW_012002601v1    C 0 C 0
s calJac3.chr6                3915567 114 + 158406734 CTGAGTAGATAaagcttgtccaacccacagcctgaggacagcccacggcccaggagggctttgaacacagcccaaagtaagctttcttaaaacattatgagattt-ttctttctt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292            2358649 114 +   2682657 CTGAGTAGATcaagcttgttcaacccacagcctgagaacagcccatggcccacgagcgctttgaacacagcctaaagtaagttttcttaaaacattgagaatttt-ttttttttt
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1      1736886 114 +   2086007 CTGAGCAGATcaagcttgtccaacccacagcctgcggacagcctatggcccatgagggctttgaacgcagcccaaagtaaagtttcttaaaacattatgagactt-ttttttttt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1      3419177 114 -   3831555 CTGAGTAGATcaagcttgtccaacccacagcctgaggacagcccatggcccaggagggctttgaacgcagcccaaagtaagctttcttaaaacattatgagattt-ttttttttt
i aotNan1.NW_018503298v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115278v1      3996877 238 +   4457520 I
e manLeu1.NW_012101289v1       128538 369 +    138091 I
e macNem1.NW_012011934v1      1901343   0 -   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e chlSab2.chr26               4269581 239 -  58131712 I

a score=1038353.000000
s hg38.chr15_KI270851v1_alt    127749 328 +    263054 --------tt-tttttttaagctcatcagctatcataagtgtattttatgtgtagcccaagacaattcttcttccagtgtggcccagggaaaccaaaagactggaccctcctgGAGCAGGGTTTTCACAGGACAGAGGAGAGACAGGCCAGCACTGGTCTCTCAGCTGAGCTCTGTCTCTCTCCAT---CACCTGTGATCTCACCCAGTCATTTCTCCACACGCACCAACAGTAAAACAGTAAGAATACCAACAAACTAATGATTATAGCAAAAATAACACAATCCATATACACTCTTCCTGCATGCCGAGGCTGACTTCCAGGACAAACATAAAATAAA
s panTro5.chr15               9384692 331 +  83230942 --------tt-tttttttaagctcatcagctatcataagtgtattttatgtgtagcccaagacaattcttcttccagtgtgacccagggaaaccaaaagactggaccctcctgGAGAAGGGTTTTCACAGGACAGAGGAGAGACAGGCCAGCACTGGTCTCTCAGCTGAGCGCTGTCTCTCTCCATCACCACCTGTGATCTGACCCAGTCATTTCTCCACACGCAACAACAGTAAAACAGTAAGAATGCCAACAAACTAATGATTATAGCAAAAATAACACAATCCATATACACTCTTCCTGCATGCCGAGGCTGACTTCCAGGACAAACATAAAATAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25870172 328 +  99763055 --------tt-ttttttaaagctcatcagctatcataagtgtattttatgtgtagcccaagacaattcttcttccagtgtggcccagggaaaccaaaagactggaccctcctgGAGAAGGGTTTTCACAGGACAGAGGAGAGACAGGCCAGCACTGGTCTCTCAGCTGAGCGCTGTCTCTCTCCAT---CACCTGTGATCTCACCCAGTCATTTCTCCACACGCAACAACAGTAAAACAGTAAGAATGCCAACAAACTAATGATTATAGCAAAAATAACACAATCCATATACACTCTTCCTGCATGCCGAGGCTGACTTCCAGGACAAACATAAAATAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        28931 328 +    551209 --------tt-tttttttaagctcatcagctatcataagtgtattttatgtgtagcccaagacaattcttcttccagtgtggcccagggaaaccaaaagactggaccctcctgGAGCAGGGTTTTCACAGTACAGAGGAGAGACAGGCCAGCACTGGTCTCTCAGCTGAGCGCTGTCTCTCTCCAT---CACCTGTGATCTCACCCAGTCATTTCTCCATACGCAACAACAGTAAAACAGTAAGAATGCCAACAAACTAATGATTATAGCAAAAATAACACAATCCATGTACACTCTTCCTGCATGCCGAGGCTGACTTCCAGGACAAACATAAAATAAA
i gorGor5.CYUI01015853v1    C 0 C 0
s cerAty1.NW_012002601v1      1567162 319 +   1584492 ---------t-tttttttaagctcatcagctatcgttagtgtattttatgtgtagcccaagacaa---ttcttccagcgtggcccagggaaaccaaaagactggacactcctgGAGCAGGGTTTTCACAGCACAGAGGAGAGAGGGGCCAACACTGGTCTCTCAGCTGAGCACCGCCTCCCCCCGT---CACCTGTGATCTCACCCAGTCACTTCTCCACACACAACAACAGTAAAACAGGAAGAATGCTGACACACTC---ATCATAGCAAAAATAACACAATCCATG--CACTCTTCCTGCGTGCCGAGGCTGACTTCCAGCACAAACATAAAATCAC
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1       128907 315 +    138091 --------tt-tttctttaagctcatcagctatcgttagtgtattttatgtgtagcccaagacaa---ttcttccagcgtggcccagggaaacc--aagactggacacgcctgGAGCAGGGTTTTCACAGCACAGAGGAGAGAGGGGCCAACACTGGTCTCTCAGCTGAGCACCGCCTCCCCCCGT---CACCTGTGATCTCACCCAGTCACTTCTCCACAC---ACAACAGTAAAACAGGAAGAATGCTGACACACTC---ATCATAGCAAAAATAACACAATCCATG--CACTCTTCCTGCGTGCCGAGGCTGACTTCCAGCACAAACATAAAATCAC
i manLeu1.NW_012101289v1    I 369 C 0
s calJac3.chr6                3915681 312 + 158406734 tt---tgcaa-ttttttaaagctcatcagctaccgttagtgtattttatgtgcagcccaagacaa---ttcttccggtgtgg-ccaggaaaatcaaaagactggacactgctgGAGCAGGGTTTTCACAGCACAGAGGAGG-ACAGGCCAGCACTGGTCTCTCAGCTGAGTACTGTCTCTCTCCAT---CACCTGTGATCTCACCCAGTCATTTATCCACACACAACAACAGTAAAACAGTAAGAATGCCAGCAAACGG---ATTACAGCA-------------GCACATACACTCTTCCTGCATGCCAAGACTGCCTTCTGGGACAAATATAAAGGAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292            2358763 318 +   2682657 tt---tgcaatttttttaaagctcatcagctaccgttagtgtatcttttgtgcagcccaagacaattcttcttcttgtgtggcccagggaaaccaaaagactggacagtcctgGAGCAGGGTTTCCACGGCACAGAGGAGACACAGGCCAGCACTGGTCTCTCAGCTGAGCACTGTCTCCCTCCAC---CACCTGTGATCTCACCCAGTCATTTATCCACACACGACAACAGTAAAACAGTAAGAATGCCAGCAAACTG---ATTACAGCA-------------CCATATACACTCTTCCTGCATGCCAAGACTGCCTTCCAGGACACATATAAAGGAGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1      1737000 313 +   2086007 tttcctgcaa-ttttttaaagctcatcagctactgttagtgtattttatgtgcagcccaagacaattctttttctggtgtggcccagggaaaccaaaagac-------tCCTAGAGCAGGGTTTCCACAGCACAGAGGAGAGACAGGCCAGCACTGGTCTCTCAGCTGAGTACTGTCTCTCTCCAT---CACCTGTGATCTCACCCAGTCATTTATCCACACACAACAACAGCAAAACAGTAAGAATGCCAACAAACTG---ATTACAGTA-------------CCATATACGCTCTTCCTGCATGCCAAGACTGCCTTCCAGGACAAATATAAAGGAGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1      3419291 319 -   3831555 tttt-tgcaa-ttttttaaagctcatcagctaccgttagtgtattttatgtgcagcctaagacaattcttcttccggtgtggcccagggaaaccaaaagactggacactcctgGAGCAGGGTTTTCACAGCACAGAGGAGAGGCCGGCCAGCACTGCTCTCTCAGCTGAGCACTGTCTCTCTCGAT---CACCTGTGATCTCACCCAGTCATTTATCCACACACAACAACAGTAAAACAGTAAGAATGCCAGCAAACTG---ATTACAGCA-------------CCATATACACTCTTCCTGCATGCCAAGACTGCCTTCCAGGACAAATATAAAGGAGT
i aotNan1.NW_018503298v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e colAng1.NW_012115278v1      3996877 238 +   4457520 I
e macNem1.NW_012011934v1      1901343   0 -   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I
e chlSab2.chr26               4269581 239 -  58131712 I

a score=57003.000000
s hg38.chr15_KI270851v1_alt    128077 10 +    263054 CAGATCAAGT
s panTro5.chr15               9385023 10 +  83230942 CAGATCAAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25870500 10 +  99763055 CAGATCAAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1        29259 10 +    551209 CAGATCAAGT
i gorGor5.CYUI01015853v1    C 0 C 0
s cerAty1.NW_012002601v1      1567481 10 +   1584492 CAGATCAAGC
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26               4269820 10 -  58131712 CAGATCACGT
i chlSab2.chr26             I 239 C 0
s manLeu1.NW_012101289v1       129222 10 +    138091 CAGATCAAGT
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115278v1      3997115 10 +   4457520 CAGATCACGT
i colAng1.NW_012115278v1    I 238 C 0
s calJac3.chr6                3915993 10 + 158406734 CAGATCAAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292            2359081 10 +   2682657 CAGATCAAGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1      1737313 10 +   2086007 CAGATCAAGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1      3419610 10 -   3831555 CAGATCAAGT
i aotNan1.NW_018503298v1    C 0 C 0
e nomLeu3.chr6               70882857 31487 + 121039945 I
e macNem1.NW_012011934v1      1901343  0 -   2379783 I
e rheMac8.chr7              164154759 61851 - 169600520 I

a score=5119844.000000
s hg38.chr15_KI270851v1_alt   128087 839 +    263054 TT-TTTAAGCCTTGCGTCCATTATTAGTGCATTACAATCTTACTTTAAAATACTTCCCCCAACAGGCTAAAACCTATGTCCTTCAGAATACATAAACCTTCTTACAAATCGCTAAGACACTTATAAAAGGAGCAAGAGGAAGGGAAATCACGAATACCTGAAGTCGGGGAAGATTCAGCGTTGCCACGGCCACGCACTCTTTCTCCTGGGGCGGGGGCCAGTCCGCGGAGCCATCCATCCCCTCACTCACCTGCCGAAGCAGGAGATCCAGCTGCTCAAAAGTCACTGAGCAAATATCCACCCCAAAAGGGACATGGAGGCCAATGGACCACTCAGAACACGATGACCAAGCAATGCTCTAAGAGGAAACGCAACAATCGGAAATGAATCTCCAAATGCAGCTCTTGGTCTGTCGCACAGGAGTCACCAGCTTGTGTGATGGAGCTGCCTTATATTATTACCTATCATCCCTCTAACTGCCCAGTGGAAAAGCATTCATGGGTGTCTAGCTCACACACTATCAGCTTCCAATTCTCCCACCCATTTCACTAGCCCCATCTCACTTGGCCATACCTAAAAAAGTAAAAACA-TTTTAAAAAATCTTTTCACTCTCAAAATGATTAATGCACATTAATGGATGGCAGTGAGGCTCTCCATCCacttgaagtggtataatagcaactctaactagacaatgaattgttagacacatataACACACAcaatacctttcatag--------tgagagaacaagtaatcggcaaaaatctaggagaactgtagaacaccttcaataaactggatctaatttatagaacacttcacccaacaacagcaaaatacat
s panTro5.chr15              9385033 838 +  83230942 TT-TTTAAGCCTTGCGTCCATTATTAGTGCATTACAATCTTACTTTAAAATACTTCACCCAACAGGCTAAAACCTATGTCCTTCAAAATACATAAACCTTCTTACAAATCGCTAAGACACTTATAAAAGGAGCAAGAGGAAGGGAAATCATGAATACCTGAAGTCGGGGAAGATTCAGCGTTGCCACGGCCACGCACTCTTTCTCCTGGGGCGGGGGCCAGTCCGCGGAGCCATCCATCCCCTCACTCACCTGCCGCAGCAGGAGATCCAGCTGCTCAAAAGTCACTGAGCAAATATCCACCCCAAAAGGGACATGGAGGCCAATGGACCACTCAGAACACGATGACCAAGCAAAGCTCTAAGAGGAAACGCAACAATCGGAAATGAATCTCCAAATGCAGCTCTTGGTCTGTCGCACAGGAGTCACCAGCTTGTGTGATGGAGCTGCCTTATATTATTACCTATCATCCCTCTAACTGCCCAGTGGAAAAGCATTCATGGGTGTCTAGCTCACACACTCTCAGCTTCCAATTCTCCCACCCATTTCACTAGCCCCATCTCGCTTGGCCATACCTAAAAAAGTAAAAACA-TTTTAAAAAATCTTTTCACTCTCAAAATGATTAATGCACATTAATGGATGGCAGTGAGGCTCTCCATCCACttgaagtggtataatagcaactct-actagacaatgaattgttagacacatataacacacacactacctttcatag--------tgagagaacaagtaatcggcaaaaatctaggataactgtagaacaccttcaataaactggatctaatttatagaacacttcacccaacaacagcaaaatacat
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25870510 838 +  99763055 TT-TTTAAGCCTTGCGTCCATTATTAGTGCATTACAATCTTACTTTAAAATACTTCACCCAACAGGCTAAAACCTATGTCCTTCAAAATACATAAACCTTCTTACAAATCGCTAAGACACTTATAAAAGGAGCAAGAGGAAGGGAAATCATGAATACCTGAAGTCGGGGAAGATTCAGCGTTGCCACGGCCACGCACTCTTTCTCCTGGGGCGGGGGCCAGTCCGCGGAGCCATCCATCCCCTCACTCACCTGCCGAAGCAGGAGATCCAGCTGCTCAAAAGTCACTGAGCAAATATCCACCCCAAAAGGGACATGGAGGCCAATGGACCACTCAGAACACGATGACCAAGCAAAGCTCTAAGAGGAAACGCAACAATCGGAAATGAATCTCCAAATGCGGCTCTTGGTCTGTCGCACAGGAGTCACCAGCTTGTGTGATGGAGCTGCCTTATATTATTACCTATCATCCCTCTAACTGCCCAGTGGAAAAGCATTCATGGGTGTCTAGCTCACACACTCTCAGCTTCCAATTCTCCCACCCATTTCACTAGCCCCATCTCGCTTGGCCATACCTAAAAAAGTAAAAACA-TTTTAAAAAATCTTTTCACTCTCAAAATGATTAATGCACATTAATGGATGGCAGTGAGGCTCTCCATCCACttgaagtggtataatagcaactct-actagacaatgaattgttagacacatataacacacacactacctttcatag--------tgagagaacaagtaatcggcaaaaatctaggagaactgtagaacaccttcaataaactggatctaatttatagaacacttcacccaacaacagcaaaatacat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1       29269 838 +    551209 TT-TTTAAGCCTTGCGTCCATTATTAGTGCATTACAATCTTACTTTAAAATACTTCACCCAACAGGCTAAAACCTATGTCCTTCAAAATACATAAACCTTCTTACAAATCGCTAAGACACTTATAAAAGGAGCAAGAGGAAGGGAAATCACGAATACCTGAAGTCGGGGAAGATTCAGCGCTGCCACAGCCACG-GCTCTTTCTCCTGGGGCGGGGGCCAGTCCGCGGAGCCATCCATCCCCTCACTCACTTGCCGAAGCAGGAGATCCAGCTGCTCAAAAGTCACTGAGCAAATATCCACCCCAAAAGGGACACGGAGGCCAATGGACCACTCAGAACACGATGACCAAGCAAAGCTCTAAGAGGAAACGCAACAATCGGAAATGAATCTCCAAATGCAGCTCTTGGTCTGTCGCACAGGAGTCACCAGCTTGTGTGATGGAGCTGCCTTATGTTATTACCTATCATCCCTCTAACTGCCCAGTGGAAAAGCATTCATGGGTGTCTAGCTCACACACTATCAACTTCCAATTCTCCCACCCATTTCACTAGCCCCATCTCACTTGGCCATACCTAAAAAAGTAAAAACA-TTTTAAAAAATCTTTTCACTCTCAAAATGATTAATGCACATTAATGGATGGCAGTGAGGCTCTCCATCCacttgaagtggtataatagcaactctaactagacaatgaattgttagacacatataacacacacactacctttcatag--------tgagagaacaagtaatcggcaaaaatctaggagaactgtagaacaccttcaataaactggatctaatttatagaacacttcacccaacaacagcaaaatacat
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7               5303463 839 + 169600520 TT-TTTTAGCCTCACGTCCATTATTAGCGCATTACAATCTTACTTTAAAATACTTCACTGAACAGGCTAAAACCCATGCCCTTCAAAATACATAAGCCTTCTTACAAACTCCTAAGTCACTTATAAAAGGAGCAAGAAGAAGGGAAATCATGAATACCTGAAGTCGTAGAAGATTCAGCGTTGCCACGGCCACGCACTCTTTCTCCTGGGGCGGGGGCCAGTCCGCGGAGCCGTCCATCCCCTCACTCACCTGCCGCAGCAGGAGATCCAGCTGCTCAAAAGTCATTGAGCAAATGTCCACCACAAAAGGGACACGGAGGCCAATGGACCACTCAGAACACGATGACCAGGCAAAGCTCTAAGAGGAAACGCAACAATCTAAAATGAATCTCCAAAAGCAGCTGCTGGTCTGTTCCACAGGAGTCCCCAGCATGTGTGATGGAGCCGCCTTATATTATCACCTATCATCCCTCTAACTGCCCAGTCCAAAGGCATTCATGGGTGTCTAGCTCACACACTGTCAGCTTCTAATCTTCCCGCCCATTTCAATAGCCCCATCTCATTTGGCCATATCTAAAAAAGTAAAAACA-TTTTTAACAATCTTTTCACTCTCAAAATGATTAATGCACATTAATGGATGGCAGTGAGGAtctccatctacttgaagtggtataacagcaactctaactagacaatcaattgttagatgcatatAACTCACACACTACCTTTCACAG--------TGAGAGAacaagcaatcggcaaggatctaggagaactgtagaacaccatcaataaactggatctaatttatacaacacttcacccaacaacagcaaaatacat
i rheMac8.chr7              n 61851 C 0
s cerAty1.NW_012002601v1     1567491 833 +   1584492 TT-TTTCAGCCTCGCATCCATTATGAGCGCATTACAATCTTAT-----AATACTTCCCCGAATAGGCTAAAACCCATGCCCTTCAAAATACATAAACCTTCTTACAAATCCCTAAGACACTTATAAAAGGAGCAAGAAGAAGTGAACTCGTGAACACCTGAAGTCGTAGAAGCTTCGGCGTTGCC-CGGCCACGCACTCTTTCTCCTGGGGCGGGGGCCAGTCCGCGGAGCCGTCCATCCCCTCCCTCACCTGCCGCAGCAGGAGATCCAGCTGCTCAAAAGTCACTGAGCAAATGTCCACCACAAAAGGGACACGGAGGCCAATGGACTACTCAGAACACGATGACCAAGCAAAGCTCTAAGAGGAAATGCGACAATCGAAAATGAATCTCCAAATGCAGCTGCTGGTCTGTTCCACAGGAGTCCCCAGCATGTGTGATGGAGCCGCCTTACATTATCACCTATCATCCCTCTCACCGCCCAGTCCAAAGGCATTCATGGGTGTCTAGCTCACACACTGTCAGCTTCCAATTTTCCCGCCCATTTCACTAGTCCCATCTCATTTGGGCATACCTAAAAAAGTAAAAGCA-ATTTTAACAATCTTTTCACTCTCAAAATGATGAATGCACATTCAGGGATGGCAGTGAGGATCTCCATCCACTTGAAGTGGTACAATAGCAACTCTAACTGGACAATGAATTGTTAGACGCATAGAACACACACACTACCTTTCATAG--------TGAGAGAACAAGTCatcggcaaaaatctaggagaactgtagaacaccatcaataaattggatctaatttatagaacacttcatccaacaacagcaaaatacat
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26              4269830 838 -  58131712 -T-TTTTAGCCTCACGTCCATTATTAGCGCATTACAATCTTACTTTAAAATACTTCACTGAACAGGCTAAAACCCATGCCCTTCAAAATACATAAGCCTTCTTACAAACTCCTAAGTCACTTATAAAAGGAGCAAGAAGAAGGGAAATCATGAATACCTGAAGTCGTAGAAGATTCAGCGTTGCCACGGCCACGCACTCTTTCTCCTGGGGCGGGGGCCAGTCCGCGGAGCCGTCCATCCCCTCACTCACCTGCCGCAGCAGGAGATCCAGCTGCTCAAAAGTCATTGAGCAAATGTCCACCACAAAAGGGACACGGAGGCCAATGGACCACTCAGAACACGATGACCAAGCAAAGCTCTAAGAGGAAACGAGACGATCTAAAATGAATTTCCAAAAGCAGCTGCTGGTCTGTTCCACAGGAGTCCCCAGCATGTGTGATGGAGCCGCCTCATATTATCACCTATCATCCCTCTCACCGCCCAGTCCAAAGGCATTCACGGGTGTCTAGCTCACACACTGTCAGCTTCCCGTTTTCCCGCCCATTTCACTAGCCCCATCTCATTTGGCCATACCTAAAAAAGTAAAAGCA-ATTTTAACAATCTTTTCACTCTCAAAATGATTAATGCACATTAATGGATGGCAGTGAGGATCTCCATCCACTTGAAGTGGTATAACAGCAACTCTAATTAGACAATCAATTGTTAGATGCATATAACTCACACACTACCTTTCACAG--------TGAGAGAacaagaaatcggcaaggatctaggagaactgtagaacaccatcaataaactggatctaatttatacaacacttcacccaacaacagcaaaatacaG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1      129232 837 +    138091 -TGTTTCAGCCTGGCATCCATTATGAGCGCATTACAATCTTACTTTAAAATACTTCACCGAATAGGCTAAAACCCATGCCCTTCAAAATACATAAACCTTCTTACAAATCCCTAAGACACTTATAAAAGGAGCAAGAAGAAGGG-AATTGTGAACACCTGAAGTCGTAGAAGCTTCGGCGTTGCC-CGGCCACGCACTCTTTCTCCTGGGGCGGGGGCCAGTCCGCGGAGCCGTCCATCCCCTCCCTCACCTGCCGCAGCAGGAGATTCAGCTGCTCAAAAGTCACTGAGCAAATGTCCTCCACAAAAGGGACACGGAGGCCAATGGACTACTCAGAACACGATGACCAGGCAAAGCTCTAAGAGGAAACGCAACAATCTAAAATGAATCTCCAAATGCAGCTGCTGGTCTGTTTCACAGGAGTCCCCAGCATGTGTGATGGAGCCACCTTACATTATCACCTATCATCCCTCTCACCGCCCAGTCCAAAGGCATTCATGGATGTCTAGCTCACACACTGTCAGCTTCCAATTTTCCCGCCCATTTCACTAGTCCCATCTCATTTGGCCATACCTAAAAAAGTAAAAGCA-ATTTTAACAATCTTTTCACTCTCAAAATGATGAATGCACATTCAGGGATGGCAGTGAGGATCTCCATCCACTTGAAGTGGTACAATAGCAACTCTAACTGGACAATGAATTGTTAGACGCATAGAACACACACACTACCTTTCATAG--------TGAGAGAacaagcaatcggcaaaaatctaggagaactgtagaacaccatcaataaaatggacctaatttattgaacacttcatccaacaacagcaaaatacat
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115278v1     3997125 838 +   4457520 -T-TTTTAGCCTCACGTCCATTATTAGCGCATTACAATCTTACTTTAAAATACTTCACTGAACAGGCCAAAACCCAGGCCCTTCAAAACACATAAGCCTTCTTACAAACTCCTCAGACACTTACAAAAGGAGCAAGAAGAAGGGAAATCATGAATACCTGAAGTCGTAGAAGATTCAGCGTTGCCACGGCCACGCACTCTTTCTCCTGGGGCGGGGGCCAGTCCGCGGAGCCGTCCATCCCCTCACTCACCTGCCGCAGCAGGAGATCCAGCTGCTCAAAAGTCATTGAGCAAATGTCCACCACAAAAGGGACACGGAGGCCAATGGACCACTCAGAACACGATGACCAGGCAAAGCTCTAAGAGGAAACGCAACAATCTAAAATGAATCTCTAAATGCAGCTGCTGGTCTGTTCCATAGGAGTCCCCAGCAGGTGTGATGGAGCCGCCTTATATTATCACCTATCATCCCTCTAACCGCCCAGTCCAAAGGCATTCATGGGTGTCTGGCTCACACACTGTCAGCTTCCAATTTTCCCGCCCATTTCACTAGCCCCATCTCATTTGGCCATACCTAAAAAAGTAAAAGCA-ATTTTAACAATCTTTTCACTCTCAAAATGATTAATGCACATTAATGGATGGCACTGAGGATCTCCATCCACTTGAAGTGGTATAACAGCAACTCTAACTAGACAATCAATTGTTAGATGCATGTAACTCACACACTACATTTCACAG--------TGAGAGAacaagcaatcggcaaggatctaggagaactgtagaacaccatgaataaactggatctaatttacacaacacttcacccaacaacagcaaaatacaG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6               3916003 840 + 158406734 TT-TTTAAGCCTCACGCACATTATTAGCGTATTATAATCTTACTTTACAACACTTCAGCAAACAGGCTAAAACCTATACCCTTCAAAACACGTAAGCCCTCTTCCAAATCCCGAAGGCACGTATAAAAGGAGCAGAAAGAAGAGAAACCATGAATACCTGAAGTCGCAGAAGATTCAGCGTTGCCACAGCCATGCACTCTTTCTCCTGGGGTGGGGGCCAGTCCACGGAGCCATCCATCCCCTCACTTACTTGCCGCAGCAGGAGATCCAGCTGCTCAAAAGTCATTGAGCAAATGTCCACCACAAAAGGGACACGGAGGCCAATGGACCACTCAGAACATGATGACCAAGCAAAGCTCTAAGAGGAAACACAAGAATCTAAAATGAATCTCCAAATGCAGTTGATGGTCT-TTCCAAAGGAGTCATCAGCATGTGTGCTGGAGCTGCCTTAGATTATCACCTATCATCCCTCTAGCTGCCCACTCCAAAGGCATTCATGATAGCTCA---CACACACTATCAGCTTCCAATTTTCTCACCCACTTCACTAGCCCCATCTCATCTGGCCATACCCAAAATAGTAAAAACA-TTTTTAAAAGTCTTTTCACTCTCAGAATAATTAATGCACATGAATGAGTGGCAGTGAGTATCTCCATCCacttgaagtggtataacagcagctctaactagacaatgaattgttacatgcatatAACATACACACTACCCTTCATAGTACAAGCATGAGGGAACAAGTaatcagcaaggatct---aggactgtggaacaccatcaataaactagatccaatttatagaacacttcatccaacagcagcaaaatacat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292           2359091 846 +   2682657 TT-TTTAAGCCTCACACACATCACTAGCGTATTATAATCTGACTTTACAACACTTCAACGAACAGGCTAAAACCCATACCCTTCAAAACATGTCAGCCTTCTTCCAAATCACGAAGACACTTATAAAAGGCGCAAAAGGAACAGAAGTCGTGAATACCTGAAGTCGCAGAAGATTCAGCGTTGCCACAGCCATGCACTCTTTCTCCTGGGGTGGGGGCCAGTCCACAGAGCCGTCCATCCCCTCACTGACTTGCCGCAGCAGGAGATCCAGCTGCTCAAAAGTCATTGAGCAAATGTCCACCACAAAAGGGACACGGAGGCCAATGGACCACTCAGAACACGATGACCAAGCAAAGCTCTAAGAGGAAACACAAGAATCTAAAATGACTCTCCAAATGCAGTTGCTGGTCT-TTCCGAAAGAGTCACCAGCATGTGTGGTGGAGCTGCCTTGTATTATCACCTATCATCCCTCTAACTGCCCACTCCAAAGGCATTCATCGTTGTCTAGCTCACACGCTATCAGCTTCCAATCTTCTCACCCACTTCACTAGCCCCATCTCATTTGGCAATACCTAAAAAAGTAAAAACA-TTTTTTAAAGTCTTTTCACTCTCAAAATGATTAATGCACATTAATGAATGGCAGTGAGGATCTCCATCCacttgaagtggtataatagcaactctaactagacaatgaaTTGCTATATGCACATAACATATACACTACCCTTCATGGTACAAGTATGAGGGAACAAGTaatcagcaaggatctagaagaactgtagaacaccatcaataaactagatctaatttatagaacgcttcacccaacaatagcaaaatacat
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1     1737323 841 +   2086007 TT-TTTAAGCCTCACACACATTATTAGCATATTATAATCTTACTTTACAATACTTCACCAAACAGGCTAAAACCCATACCCTTCAAAACACATCAGCCTTCTTCCAAATCCCAAAGGCACTTATAAAAGGAGCAAAAAGAAGAGAAACCGTGAATACCTGAAGTCGCAGAAGATTCAGCGTTGCCACGGCCATGCACTCTTTCTCCTGCGGTGGGGGCCAGTCCACGGAACCATCCATCCCCTCACTGACTTGCCGCAGCAGAAGATCCAGCTGCTCAAAAGTCATTGAGCAAATGTCCACCACAAAAGGGACACGGAGTCCAATGGACCACTCGGAACACGACGACCAAGCAAAGCTCTAAGAGGAAACACAAGAATCTAAAATGA-TCTCCAAATGCAGTTGCTGGTCT-TTCCAAAGGCGTCACCAGCATGTATGACGGAGCTGCCTTACATTATCACGTATCATCCCTCTAACTGCCCACGCCAAAGGCATTCATGGTTGTCTAGCTCACACACTATCAGCTTCCAATTTTCTCACCCAATTCACTAGCCCCATCTCATTTGGCCATACCTAAAAAAGTAAAAACATTTTTTTAAAGTATTTTCACTCTCAAAATGATTAATGCACATTAATGAATGGCAGTGAGGGtctatatccacttgaagtggtataatagcaactctaactagacaatgaattgttatatgcacatAATATACACACTACCCttcatagtacaagtatgagggaacaagtaatcagcaaggatctagaagaaaggtagaacaccatcaataaactagatctaatttatagaacac-----ccaacaacagcaaaatacat
i cebCap1.NW_016107707v1    C 0 N 0
s aotNan1.NW_018503298v1     3419620 819 -   3831555 TT-TTTAAGCCTCACGCACATTATTAGCGTATTATAAACTTACTTTACAATACTTCACCGAACAGGCTAAAACCCATACCCTTCAAAACACGTAAGCCTTCTTCCAAATCCCGAAGGCACTTATAAAGGGAGCAAAAAGAAGAGAAACCATGAATACCTGAAGTCGCAGAAGATTCAGTGTTGCCACGGCCATGCACTCTTTCTCCTGGGGTGGGGGCCAGTCCACGGAGCCATCCATTCCCTCACTTACTTGCCGCAGCAGGAGATCCAGCTGCTCAAAAGTCATTGAGCAAATGTCCACCACAAAAGGGACACGGAGGCCAATGGACCACTCAGAACACGATGACCAAGCAAAGCTCTAACAGGAAACACAAG-ATCTAAAATGAATC----------------------TTCCAAAGGAGTCACAAGCATGTGCGATGGAGCTGCCTTATATTATTACCTATCATCCCTCCAACTGCCCACTCCAAAGGCATTCACGGTGGTCTAGCTCACACACTATCACCTTCCAATTTTCCCACC-----CACTAGCCCCATCTCATTTGGTCATACCTAGAAAAGTAAAAACA-TTTCTTAAAGTCTTTTCACTCTCAAAATGATTAATGCACATTAACGAATGGCAGTGAGGATCTCCATCCacttgaagtggtataatagtaactctaattagacaatgaattgttatatgcatatAATATACACACTACCCttcatagtacaagtatgagggaacaagtaatcagcaaggatctagaagaactgtagaacaccatcaataaactagatctaatttatagaacacttcacccaacaacagcaaaatacat
i aotNan1.NW_018503298v1    C 0 C 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e macNem1.NW_012011934v1     1901343   0 -   2379783 I

a score=-20881.000000
s hg38.chr15_KI270851v1_alt   128926  9 +    263054 atAC----ttttt
s panTro5.chr15              9385871  6 +  83230942 atAC-------tt
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25871348  4 +  99763055 atAC---------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1       30107  5 +    551209 atAC--------t
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7               5304302  4 + 169600520 atac---------
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002601v1     1568324 10 +   1584492 atacat---tttt
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26              4270668 13 -  58131712 CAAAATACATATA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012101289v1      130069 13 +    138091 atacttttttttt
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115278v1     3997963 13 +   4457520 CAAAATACATATA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6               3916843  9 + 158406734 ----gtatttttt
i calJac3.chr6              C 0 T 90474
s saiBol1.JH378292           2359937  9 +   2682657 ----gtatttttt
i saiBol1.JH378292          C 0 T 86988
s aotNan1.NW_018503298v1     3420439  9 -   3831555 ----gtatttttt
i aotNan1.NW_018503298v1    C 0 N 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e macNem1.NW_012011934v1     1901343  0 -   2379783 I

a score=112726.000000
s hg38.chr15_KI270851v1_alt   128935 38 +    263054 ttttttttttttgagacagagtctcgctctgtcgccca
s panTro5.chr15              9385877 38 +  83230942 ttttttttttttgagacagagtcttgctctgtcgccca
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25871352 37 +  99763055 -tttttttttttgagacagagtcttgctctgtcgccca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1       30112 38 +    551209 ttttttttttttgagacagagtctcgctctgtcaccca
i gorGor5.CYUI01015853v1    C 0 C 0
s rheMac8.chr7               5304306 37 + 169600520 -tttttttttttgagacggagtctcgctttgtcaccca
i rheMac8.chr7              C 0 n 0
s cerAty1.NW_012002601v1     1568334 38 +   1584492 ttttttttctttgagatggagtctcgctctgttgccca
i cerAty1.NW_012002601v1    C 0 C 0
s chlSab2.chr26              4270681 38 -  58131712 Ctttttttttttgagacggagtctcgctttgtcaccca
i chlSab2.chr26             C 0 N 0
s manLeu1.NW_012101289v1      130082 38 +    138091 ttttttttttttgagatggagtctcgctctgttgccca
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115278v1     3997976 38 +   4457520 Ctttttttttttgagacagagtctcgctttgtcaccca
i colAng1.NW_012115278v1    C 0 C 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e macNem1.NW_012011934v1     1901343  0 -   2379783 I
e saiBol1.JH378292           2359946 86988 +   2682657 T
e calJac3.chr6               3916852 90474 + 158406734 T

a score=4200.000000
s hg38.chr15_KI270851v1_alt   128973 2 +    263054 gg
s panTro5.chr15              9385915 2 +  83230942 gg
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25871389 2 +  99763055 gg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015853v1       30150 2 +    551209 gg
i gorGor5.CYUI01015853v1    C 0 C 0
s cerAty1.NW_012002601v1     1568372 2 +   1584492 gg
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1      130120 2 +    138091 gg
i manLeu1.NW_012101289v1    C 0 C 0
s colAng1.NW_012115278v1     3998014 2 +   4457520 gg
i colAng1.NW_012115278v1    C 0 N 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e macNem1.NW_012011934v1     1901343 0 -   2379783 I
e rheMac8.chr7               5304343 0 + 169600520 I
e saiBol1.JH378292           2359946 86988 +   2682657 T
e calJac3.chr6               3916852 90474 + 158406734 T

a score=49613.000000
s hg38.chr15_KI270851v1_alt   128975 42 +    263054 ctagagtgcagtggcgggatctcagcccactgcaagctctgc
s panTro5.chr15              9385917 42 +  83230942 ctagagtgcagtggcgcgatctcagcccactgcaagctctgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25871391 42 +  99763055 ctagactgcagtggcgcgatctcagcccactgcaagctctgc
i panPan2.chr15             C 0 M 991
s gorGor5.CYUI01015853v1       30152 42 +    551209 ctagagtgcagtggcgcgatctcagcccactgcaagctctgc
i gorGor5.CYUI01015853v1    C 0 C 0
s cerAty1.NW_012002601v1     1568374 42 +   1584492 ctggagtacagtggcgagatctcgactcactccaagctccgc
i cerAty1.NW_012002601v1    C 0 C 0
s manLeu1.NW_012101289v1      130122 42 +    138091 ctggagtacagtggcgagatctcgactcactccaagctccgc
i manLeu1.NW_012101289v1    C 0 C 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e macNem1.NW_012011934v1     1901343  0 -   2379783 I
e rheMac8.chr7               5304343  0 + 169600520 I
e saiBol1.JH378292           2359946 86988 +   2682657 T
e calJac3.chr6               3916852 90474 + 158406734 T

a score=174809.000000
s hg38.chr15_KI270851v1_alt   129017 221 +    263054 ctcctgggttcacgccattctcctacctcagcctcctgagtagctgggactacaggtgctcaccaccacgcctggctaattattattatttttttaatttttatttttagtggagatggggtttcaccatgtcagccaggatggtcttgatctcctgacctcgtgatccacctgccttggcctcccaaagtgctgggattacaggcgtgagccaccgtgcc
s panTro5.chr15              9385959 221 +  83230942 ctcctgggttcatgccattctcctacctcagcctcctgagtagctgggactacaggtgctcaccaccacgcctggctaattattattatttttttaatttttattttcagtagagatggggtttcaccatgttagccaggatggtcttgatctcctgacctcgtgatccacctgccttggcctcccaaagtgctgggattacaggcgtgagccaccgtgcc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015853v1       30194 220 +    551209 ctcctgggttcacgccattctcctacctcagcctcctgagtagct-ggactacaggtgctcgccaccacgcctggctaattattattatttttttaatttttatttttagtagagatagggtttcaccatgttagccaggatggtcttgatctcctgacctcgtgatccacctgccttggcctcccaaagtgctgggattacaggcgtgagccaccgtgcc
i gorGor5.CYUI01015853v1    C 0 C 0
s cerAty1.NW_012002601v1     1568416 207 +   1584492 ctcccgggttcacgccattctcctgcctcagcctccggagtagccgggaatacaggcgcccaccaccacgcctggctaatttt--------------tttgtatttttagtagagaccgggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatgtgcctgccttggcctcccaaagtgctggaattacaggcttgagccaccgcgcc
i cerAty1.NW_012002601v1    C 0 N 0
s manLeu1.NW_012101289v1      130164 207 +    138091 ctcccgggttcacgccattctcctgcctcagcctccggagtagccgggaatacaggcgcccgccaccacgcctggctaatttt--------------tttgtatttttagtagagaccgggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatctgcctgccttggcctcccaaagtgctggaattacaggcttgagccaccgcgcc
i manLeu1.NW_012101289v1    C 0 n 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e panPan2.chr15             25871433 991 +  99763055 M
e macNem1.NW_012011934v1     1901343   0 -   2379783 I
e rheMac8.chr7               5304343   0 + 169600520 I
e saiBol1.JH378292           2359946 86988 +   2682657 T
e calJac3.chr6               3916852 90474 + 158406734 T

a score=10502.000000
s hg38.chr15_KI270851v1_alt   129238 41 +    263054 cggccatacatacactttacatatactttttttaaatttta
s panTro5.chr15              9386180 41 +  83230942 cggccatacatatattttacatatacttttttttaatttta
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015853v1       30414 41 +    551209 cggccATACATATACTTTACATATACttttttttaatttta
i gorGor5.CYUI01015853v1    C 0 C 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e panPan2.chr15             25871433 991 +  99763055 M
e manLeu1.NW_012101289v1      130371  0 +    138091 I
e macNem1.NW_012011934v1     1901343  0 -   2379783 I
e rheMac8.chr7               5304343  0 + 169600520 I
e saiBol1.JH378292           2359946 86988 +   2682657 T
e calJac3.chr6               3916852 90474 + 158406734 T

a score=1329321.000000
s hg38.chr15_KI270851v1_alt   129279 2459 +    263054 ttttttttgagatggagtctagctctgtcgcccaggctggagtgcagtcgcacgatctcagttcactgcaagctctgcttcccaggctcaagccagtctcctgcctcagcctcccaagtagctgggactacaggcgcccgccatcatgcccgggtaattttttttgtatttttagtagagacggagtttcaccctgttagccaggatggtctcgatctcctgaccttgtgatctgcctgccttggcctcccaaagtgctggaccatacatatactttttaagcacatacagaccatacatatactttttacacatatatgtatacatatatgtatatacagaccatac-----------------------------------------------------------------------------------------------atataCAGACCatacatata---------------ctttttaagcacatacagaatgttcact----gagaacataacctgacacataaatcttaacaaatttaaaagaaatgaaatcatatgcagtttgttctccaatcacaatggtattaaactagaaatcattaacaaaacaatctgcaaacacttcaaaataaaacaacatacttaataatccatgggtcaggccgggcgcactggctcacgcgtgtaatcccaacactgtgggaggccaagttggggggatcacctgaggccaggagttgaagatcagcctggccaacatggagaaaccccatctctactgaaaatacaaaacaattagccgggcatggtggcgggtgcccgtagtcccagctaatcaggaggctgaggcaggagaatcgcttgaacccaggagacagaggttgcagtgagccgagatcatgtcattgcactccagcctgggcaacaacagtgaaactccgtattgaag-aaa---------aataataataataataatcatcatcatcatccatgggtcaaagaacaattctcaaaagaaattagaaaatattttgaacataaatgaaaatgcaccaaaatttgtgggtttaattaaagcactgcttagaggaaaatttatagcatcaaatcattatatattacaaaaaagataggtctaaatcagcaatctaagtttccaccttaagaaaccagaaaaagagcaaagtgaacgcaaaacaagccaaaggaacaaatgccaagataaaagcagaaactaatgagattgaaagcaaaaaaagaagggaaaaattaatgaaacttaaagatcattctttgaaaagatcaacaaaattgaaaaactctaggaaaactgacaaagaaaaaaacagaaaagatacaaattatcagtatcaggaatgaatgaagggacatcactgcaggccccacagacttcagacggttagcaagagaacactaaggaaaacttgacacttaaaaatcagacaacttagatgaaataaagcaatgtccgagtgccacaaaccaggaaaatcctcctagaaacaaacaggttacctgaatagttctgtatctgttaaataaattgaatttgtaaaaaa---tttttttttttttttgagccggagtctcactctgtcacccaggctggagtgcattggtgcaatctcagctctctgcaatctctgcctcctaggttcaagtgattctcctgccttagcctcctgagtagctgggattacaggcgcacgccaccaagctcgactaattttttgtatttttagtagaaacggggtttcaccatgttagccaggctggtctcaaactcctgacctcaggtgatccacctgcctcagcctcccaacgtgctgggattataggcacgagccaccgtgcccggcgtaaaatcttttagaaagaaatctccaggttcagatggattcaaaaacatttaaagaagaaataacactaattctacacaatcccttagagaaaatggaaaaggagggaacacatgccaatactttgtataaggtcagctttcccctgacagaaagccagacgagatagtataatacaaagaaagaaaactgcaaaccaacatccctgatgagcatcaacagaaaaatcctcaaaaacgtgttagcaagtcaaatttagcaatatagaaacagaatagggccgggcgcagtggctcacgcctgtaatcataggaatattgggatgccaaggagggtggatcacttgaggtcaggagttggagaccaggctggccaacatggtgaaaccccatctctactaaaaacaaacaacaaacaaacaaaattagccaggtgtggtggtgcacacctctaatcccagctactcaggaagctgaggcaggagaattgcttgaacccaggaggcagaggttgcagagagctgagattgcaccaatgcactccagcctgggtgacagagtgagattctgtctcaaaaaaaaaaaaaaaagaaagaaagagagtagtaaatcgtggccaagtgatgcctatcccagtaacacaaggcttggtcagtatttaaaaatcaGGCTggtatagtgtctcacacctgtaa
s panTro5.chr15              9386221 2545 +  83230942 ttttttttgagatggagtctagctctgtcgcccaggctggagtgcagtcgcatgatctcagttcactgcaagctctgcctcccaggctcaagccagtctcctgcctcagcctcccaagtagctgggactacaggcgcccgccatcatgcccgggtaa-tttttttgtatttttagtagagacggagtttcaccctgttagccaggatggtctcgatctcctgacctcgtgatctgcctgcctcggcctcccaaagtgctggaccatacatatactttttaagcacatacagaccatacatatactttttacacatatatgtatacatatatgtatatacagaccatacaaatactgaccatacatatactttttaagcacatacagaccatacata-----------------tactttttacacatatatatacatata--tatatacagaccatacatataCTGACCatacatattctttttaagcacatacagaatgttcact----gagaacataacctgacacataaatcttaacaaatttaaaagaaatgaaatcatatgcagtttgttctccaatcacaatggtattaaactagaaaatattaacaaaacaatctgcaaacacttcaaaataaaacaacatacttaataatccatgggtcaggccaggcgcactggctcacgcgtgtaatcccaacactatgggaggccaagttggggggatcacctgaggccaggagttgaagatcagcctggccaacatggagaaaccccgtctctactgaaaatacaaaacaattagccgggcatggtggcgggtgcccgtagtcccagctaatcaggaggctgaggcaggagaatcgcttgaacccaggagacagaggttgcagtgagccgagatcatgtcattgcactccagcctgggcaacaacagtgcaactccgtattgaagaaaa---------aaaaaaaaaaataataataataataataatccatgggtcaaagaacaattctcaaaagaaattagaaaatattttgaacataaatgaaaatgcaccaaaatttgtgggtttaattaaagcactgcttagaggaaaatttatagcatcaaatcattatatattacaaaaaagataggtctaaatcagcaatctaagtttccaccttaagaaaccagaaaaagagcaaagtgaacgcaaaacaagccaaaggaacaaatgacaagataaaagcagaaactaatgagattgaaagcaaaaaatgaagggaaaaattaatgaaacttaaagatcattctttgaaaagatcaacaaaattgaaaatctctaggaaaactgacaaagaaaaaaacagaaaagatacaaattatcagtatcaggaatgaatgaagggacatcactgcaggccccacagacttcagacggttagcaagagaacactaaggaaaacttgacacttaaaaatcagacaacttagatgaaataaagcaatgtccgagtgccacaaaccaggaaaatcctcctagaaacaaacaggttacctgaatagttctgtatctgttaaataaattgaatttgtaaaaaa----aattttttttttttgagccggagtctcactctgtcacccaggctggagtgcattggtgcaatctcagctctctgcaatctccacctcccaggttcaagtgattctcctgccttagcctcctgagtagctgggattacaggcgcacgccaccaagctcgactaattttttgtatttttagtagaaacggggtttcaccatgttagccaggctggtctcaaactcctgacctcaggtgatccacctgcctcggcctcccaacatgctgggattataggcacgagccaccgcgcccggcgtaaaatcttttagaaagaaatctccaggttcagatggattcaaaaacatttaaagaagaaataacactaattctacacaatcccttatagaaaatggaaaaggagggaacacatgccaatactttgtataaggtcagctttcccctgacagaaagccagacgagatagtataatacaaagaaagaaaactgcaaaccaacatccctgatgagcatcaacagaaaaatcctcaaaaacgtgttagcaagtcaaatttagcaatatagaaacagaatagggccgggcgcagtggctcacgcctgtaatcataggaatattgggatgccaaggagggtggatcacttgaggtcaggagttggagaccaggctggccaacatggcgaaaccccatctctactaaaaacaaacaacaaacaaacaaaattagccaggtgtggtggtgtacacctctaatcccagctactcaggaagctgaggcaggagaattgcttgaacccaggaggcagaggttgcagagagctgagattgcaccaatgcactccagcctgggtgacagagtgagattctgtctcaaaaaaaaaaaaa----aaagaaagagagtagtaaattgtggccaagtgatgcctatcccagtaacacaaggcttggtcagtatttaaaaatcaGGCTggtatagtgtctcacacctgtaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25872424 2543 +  99763055 ttttttttgagatggagtctagctctgtcgcccaggctggagtgcagtcgcatgatctcagttcactgcaagctctgcctcccaggctcaagccagtctcctgcctcagcctcccaagtagctgggactacaggcgcccgccatcatgcccgggtaattttttttgtatttttagtagagacggagtttcaccctgttagccaggatggtctcgatctcctgacctcgtgatctgcctgcctcggcctcccaaagtgctggACcatacatatactttttaagcacatacagaccatacatatactttttacacatatatgtatacatatatgtatatacagaccatacaaatactgaccatacatatactttttaagc-----------------acatacagaccatacatatactttttacacatatatatacatatatgtatatacagaccatacatatacTGACCatacatattctttttaagcacatacagaatgttcact----gagaacataacctgacacataaatcttaacaaatttaaaagaaatgaaatcatatgcagtttgttctccaatcacaatggtattaaactagaaaatattaacaaaacaatctgcaaacacttcaaaataaaacaacatacttaataatccatgggtcaggccaggcgcactggctcacgcgtgtaatcccaacactatgggaggccaagttggggggatcacctgaggccaggagttgaagatcagcctggccaacatggagaaaccccgtctctactgaaaatacaaaacaattagccgggcatggtggcgggtgcccgtagtcccagctaatcaggaggctgaggcaggagaatcgcttgaacccaggagacagaggttgcagtgagccgagatcatgtcattgcactccagcctgggcaacaacagtgcaactccgtattgaag-aaa---------aataataataataataataataataataatccatgggtcaaagaacaattctcaaaagaaattagaaaatattttgaacataaatgaaaatgcaccaaaatttgtgggtttaattaaagcactgcttagaggaaaatttatagcatcaaatcattatatattacaaaaaagataggtctaaatcagcaatctaagtttccaccttaagaaaccagaaaaagagcaaagtgaacgcaaaacaagccaaaggaacaaatgacaagataaaagcagaaactaatgagattgaaagcaaaaaatgaagggaaaaattaatgaaacttaaagatcattctttgaaaagatcaacaaaattgaaaatctctaggaaaactgacaaagaaaaaaacagaaaagatacaaattatcagtatcaggaatgaatgaagggacatcactgcaggccccacagacttcagacggttagcaagagaacactaaggaaaacttgacacttaaaaatcagacaacttagatgaaataaagcaatgtccgagtgccacaaaccaggaaaatcctcctagaaacaaacaggttacctgaatagttctgtatctgttaaataaattgaatttgtaaaaaa-----attttttttttttgagccggagtctcactctgtcacccaggctggagtgcattggtgcaatctcagctctctgcaatctccacctcccaggttcaagtgattctcctgccttagcctcctgagtagctgggattacaggcgcacgccaccaagctcgactaattttttgtatttttagtagaaacggggtttcaccatgttagccaggctggtctcaaactcctgacctcaggtgatccacctgcctcggcctcccaacgtgctgggattataggcacgagccaccgcgcccggcgtaaaatcttttagaaagaaatctccaggttcagatggattcaaaaacatttaaagaagaaataacactaattctacacaatccctcatagaaaatggaaaaggagggaacacatgccaatactttgtataaagtcagctttcccctgacagaaagccagacgagatagcataatacaaagaaagaaaactgcaaaccaacatccctgatgagcatcaacagaaaaatcctcaaaaacgtgttagcaagtcaaatttagcaatatagaaacagaatagggccgggcgcagtggctcacgcctgtaatcataggaatattgggatgccaaggagggtggatcacttgaggtcaggagttggagaccaggctggccaacatggcgaaaccccatctctactaaaaacaaacaacaaacaaacaaaattagccaggtgtggtggtgtacacctctaatcccagctactcaggaagctgaggcaggagaattgcttgaacccaggaggcagaggttgcagagagctgagattgcaccaatgcactctagcctgggtgacagagtgagattctgtct---acaaaaaaaaa----aaagaaagagagtagtaaattgtggccaagtgatgcctatcccagtaacacaaggcttggtcagtattTaaaaatcaggctggtatagtgtctcacacctgtaa
i panPan2.chr15             M 991 C 0
s gorGor5.CYUI01015853v1       30455 2458 +    551209 ttttttttgagatggagtctagctctgtcgcccaggctggagtgcagtcgcatgatctcagttcactgcaagctctgcctcccaggctcaagccagtctcctgcctcagcctcccaagtagctgggactacaggcgcccgccatcacgcccgggtaattttttttgtatttttagtagagatggagtttcaccctgttagccaggatggtctcgatctcctgacctcgtgatctgcctgcctcggcctcccaaagtgctggACCATACATATACTTTTTAAGCACATACAGACCATACATATACTTTTTACACATATATGTATACATATTTGTatatacagaccatac-----------------------------------------------------------------------------------------------atatacagaccatacatata---------------ctttttaagcacatacagaatgttcactaagagaaaacataacctgacacataaatcttaacaaatttaaaa-----gaaatcatatgcagtttgttctccaatcacaatggtattaaactagaaatcattaacaaaacaatctgcaaacacttcaaaataaaacaacatacttaataatccatgggtcaggctgggcgcactggctcacgcgtgtaatcccaacactgtgggaggccaagttggggggatcacctgaggccaggagttgaagatcagcctggccaacatggagaaaccccatctctactgaaaatacaaaacaattagccgggcatggtggcgggtgcccgtagtcccagctaatcaggaggctgaggcaggagaatcgcttgaacccaggagacagaggttgcagtgagccgagatcatgtcattgcactccagcctgggcaacaacagtgaaactccatattgaag-aaaaataataataataataataataataataataataataatccatgggtcaaagaacaattctcaaaagaaattagaaaatattttgaacataaatgaaaatgcaccaaaatttgtgggtttaattaaagcactgcttagaggaaaatttatagcatcaaatcattatatattacaaaaaagataggtctaaatcagcaatctaagtttccaccttaagaaaccagaaaaagagcaaagtgaacgcaaaacaaaccaaaggaacaaatgacaagataaaagcagaaactaatgagattgaaaggaaaaaaagaagggaaaaattaatgaaacttaaagatcgttctttgaaaagatcaacaaaattgaaaaactctaggaaaactgacaaagaaaaaaacagaaaagatacaaattatcagtatcaggaatgaatgaagggacatcactgcaggccccacagacttcagacggttagcaagagaacactaaggaaaacttgacacttaaaaatcagacaacgtagatgaaataaagcaatgtctgagtgccacaaaccaggaaaatcctcctagaaacaaacaggttacctgaatagttctgtatctgttaaataaattgaatttgtaaaatcttttttttttttttttctgagccggagtctcactctgtcacccaggctggagtgcattggtgcaatctcagctctctgcaatctccgcctcccaggttcaagtgattctcctgccttagcctcctgagtagctgggattacaggcgcacgccagcaagcttgactaattttttgtatttttagtagaaacggggtttcaccatgttagccaggctggtctcaaactcctgacttcaggtgatccacctgcctcggcctcccaacgtgctgggattataggcacgagccaccgcacccgacgtaaaatcttttagaaagaaatctccaggttcagatggattcaaaaacatttaaagaagaaataacactaattctacacaatcccttatagaaaatggaaaaggagggaacacatgccaatactttgtataaggtcagctttcccctgacagaaagccagacgagatagtataatacaaagaaagaaaactgcaaaccaacatccctgatgagcatcaacagaaaaatcctcaaaaacgtgttagcaagtcaaa--aagcaat-tagaa--agaatagggccgggcgcagtggctcacgcctgtaatcataggaatattgggatgccaaggagggtggatcacttgaggtcaggagttggagaccaggctggccaacatggtgaaaccccatctctactaaaaacaaacaacaaacaaacaaaattagccaggtgtggtggtgcacacctctaatcccagctactcaggaagctgaggcaggagaattgcttgaacccaggaggcagaggttgcagagagctgagattgcaccaatgcactccagcctgggtgacagagtgagattctgtct---caaaaaaaaaa----aaaaaaagagagtagtaaattgtggccaagtggtgcctatcccagtaacacaaggcttggtcagtatttaaaaatcaggctggtatagtgtctcacacctgtaa
i gorGor5.CYUI01015853v1    C 0 n 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1      130371    0 +    138091 I
e macNem1.NW_012011934v1     1901343    0 -   2379783 I
e rheMac8.chr7               5304343    0 + 169600520 I
e saiBol1.JH378292           2359946 86988 +   2682657 T
e calJac3.chr6               3916852 90474 + 158406734 T

a score=8676.000000
s hg38.chr15_KI270851v1_alt   131738 15 +    263054 tcccagcactttggg
s panTro5.chr15              9388766 15 +  83230942 tcccagcactttggg
i panTro5.chr15             C 0 C 0
s panPan2.chr15             25874967 15 +  99763055 tcccagcactttggg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       58166 15 -    281578 tccCAGCACTTTGGG
i gorGor5.CYUI01000141v1    I 35072 C 0
e nomLeu3.chr6              70882857 31487 + 121039945 I
e manLeu1.NW_012101289v1      130371  0 +    138091 I
e macNem1.NW_012011934v1     1901343  0 -   2379783 I
e rheMac8.chr7               5304343  0 + 169600520 I
e saiBol1.JH378292           2359946 86988 +   2682657 T
e calJac3.chr6               3916852 90474 + 158406734 T

a score=768750.000000
s hg38.chr15_KI270851v1_alt    131753 248 +    263054 agctcactgcaacctcaaactcttaagctcaagcaatcctcctgcctcagcctcctgagtagctgagactacaggtgcacaccagcatgccacgctaatttttaatttttttgtagagatgggatctcgctgtgttgcccaagctggtctctaactcctgggctcaagtgaccctctcgcctatgcctcccgaagtgctg---------gtgtgagctgttgcacccagccaaaatacggcagatttgtagtacccc
s panTro5.chr15               9388781 248 +  83230942 agctcactgcaacctcaaactcttgagctcaagcaatcctcctgcctcagcctcctgagtagctgagactacaggtgcacgccagcatgccacgctaatttttaatttttttgtagagatgggatctcgctatgttgcccaagctggtctctaactcctgggctcaagtgaccctctcgcctatgcctcccgaagtgctg---------gtgtgagctgtggcacccagccaaaatacggcagatttgtagtacccc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25874982 248 +  99763055 agctcactgcaacctcaaactcttgagctcaagcaatcctcctgcctcagcctcctgagtagctgagacaacaggtgcacgccagcatgccacgctaatttttaatttttttgtagagatgggatctcgctatgttgcccaagctggtctctaactcctgggctcaagtgaccctctcgcctatgcctcccgaagtgctg---------gtgtgagctgttgcacccagccaaaatacggcagatttgtagtacccc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        58181 257 -    281578 Agctcactgcaacctcaaactcttgagctcaagcaatcctcctgcctcagcctcctgagtagctgagactacaggcgcacaccagcatgccacgctaatttttaatttttttgtagagatgggatcttgctatgttgcccaagctggtctctaactcctgggctcaagtgaccctctcgcctatgcctcctgaagtgctgggattacatgtgtgagccattgcacccagccaaaatacggcagatttgtagtacccc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70914344 256 + 121039945 agctcactgcagcctcaaactcttgaatttaagcaatcctcctgcctcagcctcctgagtagctgagactacaggcgcacaccagcatgccatgctaatttttaa-ttttttgtagagatgggacatcgttaggttgcccaagctggtctctaactcctgggctcaagtgaccctctcgcctaggcctcccaaagtgctgggattacaggcgtgagccattgcacccagccaagatacggcagatttctagtacccc
i nomLeu3.chr6              I 31487 C 0
s rheMac8.chr7              164216610 256 - 169600520 agctcactgcagcctcaaactcttgagctcaagcgatcctcctgcctcagcctcctgagtagctgagactacaggcgcacaccagcgtgccatgctaatttttaa-ttttttgtagagatgggatctcgctatgttgcccaagctggtctctaactcctgggctcaagcgactctcttgcctaggcctcccgaagtgctgggattaccggcgtgagccactgcacccaaccaagatacagcagatttctagtacccc
i rheMac8.chr7              I 61851 C 0
s macFas5.chr7              165536041 256 - 171882078 agctcactgcagcctcaaactcttgagctcaagcgatcctcctgcctcagcctcctgagtagctgagactacaggcgcacaccagcgtgccatgctaatttttaa-ttttttgtagagatgggatctcgctatgttgcccaagctggtctctaactcctgggctcaagcgactctcttgcctaggcctcccaaagtgctgggattaccggcgtgagccactgcacccaaccaagatacagcagatttctagtacccc
i macFas5.chr7              N 0 C 0
s chlSab2.chr26              53757806 256 +  58131712 agctcattgcagcctcaaactcttgagctcaagcgatcctcctgcctcagcctcctgagtagctgagactacaggcgcacaccagcgtgccatgctaatgtttaa-ttttttgtagagatgggatctcgctatattgcccaagctggtctctaactcctgggctcaaacgactctctcgcctaggcctcccgaagtgctgggattacaggcgtgagccactgcacccagccaagatacagcagatttctggtacccc
i chlSab2.chr26             N 0 C 0
s manLeu1.NW_012102332v1       395864 256 -   3636681 agctcactgcagcctcaaactcttgagctcaagcgatcctcctgcctcagcctcctaagtagctgagactacaggcgcacaccagcatgccatgctaatttttaa-ttttttgtagagatgggatctcgctatgttgcccaagctggtctctaactcctgggctcaagcgactctctcgcctaggcctcccgaagtgttgggattacaggtgtgagccactgcacccagccaacatacagcagatttctagtacccc
i manLeu1.NW_012102332v1    I 9659 C 0
e macNem1.NW_012011934v1      1901343   0 -   2379783 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=726516.000000
s hg38.chr15_KI270851v1_alt    132001 253 +    263054 agaaggctccttcctgacctacactttcccacaaagg--aaactacccttctgacttcaatcatcgtcagttctgccttcctgcgcttcatctaggtgggctggtactgtgcactgtctctcatacctggct-ccctct-------------------attcacccatgtcgttgagtgttcctaccacttcatttttct-tttt------------tggctgtgtagtattccatgatgtgactgtatcaccatttattcactctcctg-ttgatggacatttaggtt
s panTro5.chr15               9389029 253 +  83230942 agaaggctccttcctgacctacactttcccacaaagg--aaactactcttctgacttcaatcatcgtcagttctgccttcctgcgcttcatctaagtgggctggtacagtgcactgtctctcatacctggct-ccctct-------------------attcacccatgttgttgagtgttcctaccacttcatgtttct-tttt------------tggctgtgtagtattccatgatgtgactgtatcaccatttattcactctcctg-ttgatggacatttaggtt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25875230 253 +  99763055 agaaggctccttcctgacctacactttcccacaaagg--aaactactcttctgacttcaatcatcgtcagttctgccttcccgcgcttcatctaagtgggctggtacagtgcactgtctctcatacctggct-ccctct-------------------attcacccatgtcgttgagtgttcctaccacttcatgtttct-tttt------------tggctgtgtagtattccatgatgtgactgtatcaccatttattcactctcctg-ttgatggacatttaggtt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        58438 253 -    281578 agaaggctccttcctgacctacactttcccacaaagg--aaactactcttctgacttcaatcatcgtcagttctgccttcctgtgcttcatctaagtgggctggtacagtgcactgtctctcatatctggct-ccctct-------------------attcacccatgtcgttaagtgttcctagcacttcatttttct-tttt------------tggctgtgtagtattccatgatgtgactgtatcaccatttattcactctcctg-ttgatggacatttaggtt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70914600 253 + 121039945 ggaaagctccttcctgatctacactttcccacaaagggagaacta-tcatcggactacaatcatcatcaggtctagcattctgtggttcatcaa---ggggcgggacagtgcactgtctctcatacctggctgccctct-------------------a-tcacccaggtcgtggaatgttcgtaccacttcatttttctatttt------------tggctgtgtagtattccatgaggggactgtatcaccatttattcactctcctgtttgatggacatttaggtt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164216866 244 - 169600520 agaaggctccttcctgatctacactttcccacaaagg--aaactactcttcggacttcaatcgtcatcagttctg-cttcctgcgcttcatctcagtgggatggtgcag-----tgtctctcgtacctggct-ccctct-------------------gttcacccatgtcgtggaatgttcctgccccttcgtttttct-tttt------------tggctgtgtagtattccatgatgtgaatgtatcaccatttattcactctcctg-t---tggacatttcggtg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165536297 244 - 171882078 agaaggctccttcctgatctacactttcccacaaagg--aaactactcttcggacttcaatcgtcatcagttctg-cttcctgcgcttcatctcagtgggatggtgcag-----tgtctctcgtacctggct-ccctct-------------------gttcacccatgtcgtggaatgttcctgccccttcgtttttct-tttt------------tggctgtgtagtattccatgatgtgaatgtatcaccatttattcactctcctg-t---tggacatttcggtg
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              53758062 248 +  58131712 agaaggctccttcctgatccaaactttcccacaacgg--aaactactcttcggacttcaatcatcatcagttctgccttcctgcgcttcatctcagtgggatggtgcag-----tgtctctcatacctggct-ccctct-------------------gttcacccatgtcgtggaatgttcctgccccttcgtttttct-tttt------------tgtctatgtagtattccatgatgtgaatgtatcaccatttattcactctcctg-ttgatggacattttggtg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       396120 244 -   3636681 agaaggctccttcctgatctacactttcccacaaagg--aaactactcttcggacttcaatcgtcgtcagttctg-cttcctgcgcttcatctcagtgggatggtgcag-----tgtctctcgtaccgggct-ccctct-------------------gttcacccatgtcgtggaatgttcctgccccttcgtttttct-tttt------------tggctgtgcagtattccatgatgtgaatgtatcaccatttattcactctcctg-t---tggacatttcggtg
i manLeu1.NW_012102332v1    C 0 C 0
s canFam3.chr3               59901404 274 -  91889043 AAAAATTTcctttctgatctataaccctccctggaga--aaatcactattctgattt--attg----aagtttggcattcttgaaattcatataagtgaaat---acagtgcattttctcttatagttggtt-tctttccctcaacctaatagatgagattcatccttgttgttgaatgtttc-gctacttcattccttt-gtgtgtggggagggcaggggggtgtagtactccattaggtgaatataacacaattttaccttcctcttg-ttaattatcatttaagtt
i canFam3.chr3              N 0 C 0
e macNem1.NW_012011934v1      1901343   0 -   2379783 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=148310.000000
s hg38.chr15_KI270851v1_alt    132254 36 +    263054 gttttcattt-ggggctcttatgaataaaaatggcag
s panTro5.chr15               9389282 36 +  83230942 gttttcattt-ggggctcttatgaataaaaatggcag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25875483 36 +  99763055 gttttcattt-ggggctcttatgaataaaaatggcag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        58691 36 -    281578 gttttcattt-ggggctcttatgaataaaaatggcag
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70914853 37 + 121039945 gctttcatttgggggctcttatgaataataatggcaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164217110 36 - 169600520 gttttcattt-ggggctcttatgaataaaaatggcaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165536541 36 - 171882078 gttttcattt-ggggctcttatgaataaaaatggcaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       376632 34 +   2379783 gttttcattt--gggctcttatg-ataaaaatggcaa
i macNem1.NW_012011934v1    I 9491 C 0
s chlSab2.chr26              53758310 36 +  58131712 gttttcattt-ggggctcttatgaataaaaatggcaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       396364 36 -   3636681 gttttcattt-ggggctcttatgaataaaaatggcaa
i manLeu1.NW_012102332v1    C 0 C 0
s canFam3.chr3               59901678 37 -  91889043 gtatccatctggagactattatgaataaaaagggctg
i canFam3.chr3              C 0 C 0
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=2967165.000000
s hg38.chr15_KI270851v1_alt    132290 627 +    263054 tgaacattcttatataagtctttttgtggacatatgcactcgtttctcttgtgtacatgcttagga-tggaatttctgaaggtaggcatagatatagctttagtagaagctgccaaaca-ggtttccaatgtgcttatacaattttatgctactgccagc-----ttgacagttcttgtagctctacatctttaccaatactctgtatAACACAGCATTTAACTTTAAATAGAGATAAAACGATGG-TAAGATCCAAAGAAGTGTGCATGTTCCTGAAGA-ACATCC-CGTAAAGGGCCTATTTTATTCATCTGTTTCGGGCACTGAAAACCACTGCATGGCTGG-ATGAGGAAGGAGGCCTGGT--ACAACTCCCAAGAAGGCATGTGTCCCTCGGGTGGGCTTTGTTTCCCAGAAACTC--------------TGGGGAAGGGGTGGAGAGGCACCTTCTGGGCCAGCTGGTCTCCTCTGGCTTTTCTTGTACCCTAGGGCTCCCTCCAAAGAGACAGAGA------ACAGCC--TGGCCGGGGAGCAGTATCTCCTACTGCGCTTGCTGTGA---GCCAGCCACTCTGC-CTTCTTTCAGGAAT-TACAAAATCCACAGGTCCCC-GGCATTCttatttat-gtatttattcatttatGAGGCATG
s panTro5.chr15               9389318 627 +  83230942 tgaacattcttatagaagtctttttgtggacatatgcactcgtttctcttgtgtacatgcttagga-tggaatttctgaaggtaggcatagatatagctttagtagaagctgccaaaca-ggtttccaatgtgcttatacaattttattctactgccagc-----ttgacagttcttgtagctctacatctttaccaatactctgtatAACACAGCATTTAACTTTAAATAGAGATAAAACGATGG-TAAGATCCAAAGAAGAGTGCATGTTCCTGAAGA-ACATCC-AGTAAAGGGCCTATTTTATTCATCTGTTTCGGGCACTGAAAACCACTGCATGGCCGG-GTGAGGAAGGAGGCCTGGT--ACAACTCCCAAGGAGGCATGTGTCCCTCGGGTGGGCTTTGTTTCCCAGAAACTC--------------TGGGGAAGGGGTGGAGAGGCACCTTCTGGGCCAGCTGGTCTCCTCTGGCTTTTCTTGTACCCTAGGGCTCCCTCCAAAGAGACACAGA------ACAGCC--TGGCCGGGGAGCAGTATCTCCTACTGCGCTTGCTGTGA---GCCAGCCACTCTGC-CTTCTTTCAGGAAT-TACAAAATCCACAGGTCCCC-GGCATCCttatttat-gtatttattcatttaGGAGGCATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25875519 628 +  99763055 tgaacattcttatagaagtctttttgtggacatatgcactcgtttctcttgtgtacgtgcttagga-tggaatttctgaaggtaggcatagatatagctttagtagaagctgccaaaca-ggtttccaatgtgcttatacaattttatgctactgccagc-----ttgacagttcttgtagctctacatctttaccaatactctgtatAACACAGCATTTAACTTTAAATAGAGATAAAACGATGGTTAAGATCCAAAGAAGAGTGCATGTTCCTGAAGA-ACATCC-AGTAAAGGGCCTATTTTATTAATCTGTTTCGGGTTCTGAAAACCACTGCATGGCCGG-ATGAGGAAGGAGGCCTGGT--ACAACTCCCAAGGAGGCATGTGTCCCTCGGGTGGGCTTTGTTTCCCAGAAACTC--------------TGGGGAAGGGGTGGAGAGGCACCTTCTGGGCCAGCTGGTCTCCTCTGGCTTTTCTTGTACCCTAGGGCTCCCTCCAAAGAGACACAGA------ACAGCC--TGGCCGGGGAGCAGTATCTCCTACTATGCTTGCTGTGA---GCCAGCCACTCTGC-CTTCTTTCAGGAAT-TACAAAATCCACAGGTCCCC-GGCATCCttatttat-gtatttattcatttaGGAAGCATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        58727 626 -    281578 tgaacattcttatataagtctttttgtggacatatgcactcgtttctcttgtgtacatgcttagga-tggaatttctgaaggtaggcatagatatagctttagtagaagctgccaaaca-ggtttccaatgtgcttatacaattttatgctactgccagc-----ttgacagttcttgtagctctacatctttaccaa-actctgtatAACACGGCATTTATCTTTAAATAGAGATAAAACGATGG-TAAGATCCAAAGAAGTGTGCATGTTACTGAAGA-ACATCC-AGTAAAGGGCCTATTTTATTCATCTGTTTCAGGCACTGAAAACCACTGCATGGCTGG-ATGAGGAAGGAGGCCTGGT--ACAACTCCAAAGGAGGCAGGTGTCCCTCAGGTGGGCTTTGTGTCCCAGAAACTC--------------TGGGGAAGGGGTGAAGAGGCACCTTCTGGGCCAGCTGGTCTCCTCTGGCTTTTCTTGTACCCTAGGGCTCCCTCCAAAGAGACAGAGA------ACAGCC--TGGCCGGGGAGCAGTATCTCCTACTGTGCTTGCTGTGA---GCCAGCCACTCTGC-CTTCTTTCAGGAAT-TACAAAATCCATAGGTCCCC-GGCATCCttatttat-gtatttattcatttatGAGGCATG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70914890 622 + 121039945 tgaacattcttatgtaagtctttttgtggacatatgcactcatt--ctctgtgtacatgcttagga-tggaatttctgaaggtaggcatagatatagctttagtagaagctgtcaaaca-ggtttccaatgtgcttatacaactttatgctactgccagc-----ttgacagttcttgtagctctacatctttaccaatactcagtatAACACAGCATTTAACTTTAAATAGAGATAAAACAATGG-AAAGATCCAAAGAAGTGTGCATGTTCCTGAAGA-ACATCC-AATAAAGGGCCTATTTTATTCA--TGTTTCTGGCACTGAAAACCACTGCATGGCCAG-ATCAGGAAGGAGGCCTGGT--ATAACTCCCAAGGAGGCATGTGTCCCTCGGGTGGGCTTTGTGTCCCAGAAACTC--------------CGGGGAAGGGGTGGAGAGGCACCTTCTGGGCGAGCTGGTCTCCTCTGGCTTTTCTTGTCCCCTAGGGCTCCCTCCAAAGAGACAGAGC------ACAGCC--TGGCCAGGGAGCAATATCTCCTACTGAGCTTTCTGTGA---GCCAGCCACTCTGC-CCTCTTTCAGGAAT-TACAAGG-ATGCAGGTCCAC-AGCATCCttatttat-gtatttattcatttatGAGGCATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164217146 627 - 169600520 tgagcattcttatataagtctttttgtggacatttgcattcatttctcttgtgtacctgcttagga-tggaatttctgaaggtaggcatatatttagctttagtagaaactgccaaaca-ggtttccaatgtgcttatacaactttatgctactgccagc-----ttgacagttcttgtacttctacatcttttccaatactcggtatAACACAGCATTTAACTTTAAATAGAGATAAAATGCTGG-AGAGATCCAAAGAAGTGTGCGTGTTCCTGAAGG-ACATCC-AATAAAGGGCCTATTTTATTCATCTATTTCTGGCACTGAAAACCACTGCATGGCCAG-ATCAGGAAGGAGGCCTGGT--ACAACTCCCAAGGAGGCACATGTCCCTCAGGTGGGCTTTGTGTCCCAGAAACTC--------------TGGGGAAGGGGTGGAGAGGTGCCTTCTGGGCGAGCTGCTCTCCTCTGGCTTTTCTTGTCCCCTAGGGCTCCCAACCAGGAGACAGAGC------ACAGCC--TGGCCAGGGAGCAGTACCTGCTACTGCGCTTGCTGTGA---GCCAGCCACTCTGC-CCTCTTTCAGGAAT-TACAGAATCCACAGGTACCC-GGCATCGttatttat-ttatttattcatttatGCGGCATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165536577 627 - 171882078 tgagcattcttatataagtctttttgtggacatttgcattcatttctcttgtgtacctgcttagga-tggaatttctgaaggtaggcatatatttagctttagtagaaactgccaaaca-ggtttccaatgtgcttatacaactttatgctactgccagc-----ttgacagttcttgtacttctacatcttttccaatactcggtatAACACAGCATTTAACTTTAAATAGAGATAAAATGCTGG-AGAGATCCAAAGAAGTGTGCGTGTTCCTGAAGG-ACATCC-AATAAAGGGCCTCTTCTATTCGTCTATTTCTGGCACTGAAAACCACTGCATGGCCAG-ATCAGGAAGGAGGCCTGGT--ACAACTCCCAAGGAGGCACATGTCCCTCAGGTGGGCTTTGTGTCCCAGAAACTC--------------TGGGGAAGGGGTGGAGAGGTGCCTTCTGGGCGAGCTGCTCTCCTCTGGCTTTTCTTGTCCCCTAGGGCTCCCAACCAGGAGACAGAGC------ACAGCC--TGGCCAGGGAGCAGTACCTGCTACTGCGCTTGCTGTGA---GCCAGCCACTCTGC-CCTCTTTCAGGAAT-TACAGAATCCACAGGTACCC-GGCATCGttatttat-ttatttattcatttatGCGGCATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       376666 615 +   2379783 tgagcattcttatataagtc-ttttgtggacatttgcattcatttct-ttgtgtacatgcttagga-tggaatttctgaaggtaggcatatattta--cttagtagaaactgccaaaca-ggtttccaatgtgcttatacaactttatgctactgccagc-----ttgacagt--ttgtacttctacatcttttccaacTAATCGTATAACACAGCATTTAACTTTAAATAGAGATAAAATGCTGG-AGAGATCCAAAG-AGTG-GCGTGTTCCTGAAGGAACATCCAAATAAAGGGC--CTTTTATTCATCTATTTCTGGCACTGAAAACCACTGCATGGCCAG-ATCAGGAAGGAGGCCTGGT--ACAACTCCCAAGGAGGCACCATGACCTCAGTGGGTCTTCGTGTCCCAGAAACTC--------------T-GGGAAGGGGTGGAGAGGTGCCTTC-GGGCGAGCTGGTCTCCTCTGGCTTTTCTTGTCCCCTAGGGCT-CCAACCAGGAGACAGAGC------ACAGCC--TGGCCAGGGAGCAGTACCTGCTACTGCGCTTGCTG-GA---GCCAG-CACTCTGC-CCTCTTTCAGGATTATACAGAATCCACAGGTACCCGGGCATCGTTATTGATATTATTTATTCATT--TTCGGCATG
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53758346 627 +  58131712 ggaacattcttatataagtctttttgtggacatttgcattcatttctcttgtgtacatgcttagga-tggaatttctgaaggtaggcatatatttagctttagtagaaactgccaaaca-ggtttccaatgtgcttatacaactttatgctactgccagc-----ttgacagttcttgtacttctacatcttttccaatactcggtatAACACAGCATTTAACTTTAAACAGAGATAAAATGATGG-AAAGATCCAAAGAAGTGTGCGTGTTCCTGAAGG-ACATCC-AATAAAGGGCCTCTTCTATTCGTCTATTTCTGGTACTGAAAACCACTGCATGGCCAG-ATCAGGAAGGAGGCCTGGT--ACAACTCCCAAGGAGGCACATGTCCCTCAGGTGGGCCTCGTGTCCCAGAAACTC--------------CGGGGAAGGGGTGGAGAGGTGCCTTCTGGGCGAGCTGGTCTCCTCTGGCTTTTCTTGTCCCCTAGAGCTCCCAACCAGGAGACAGAGC------ACAACC--TGGCCAGGGAGCAGTATCTCCTACTGCCCTTGCTGTGA---GTCAGCCATTCTGC-CCTCTCTCAGGAAT-TACAAAATCCAAAGGTACCC-GGCATCGttatttat-ttattcattcatttatGCGGCATG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       396400 627 -   3636681 tgagcattcttatataagtctttttgtggacatttgcattcatttctcttgtatacatgcttagga-tggaatttctgaaggtaggcatatatttagctttagtagaaactgccaaaca-ggtttccaatgtgcttatacaactttatactactgccagc-----ttgacaattcttgtacttctacatcttttccaatactcggtatAACACAGCATTTAACTTTAAATAGAGATAAAATGCTGG-AGAGATCCAAAGAAGTGTGCGTGTTCCTGAAGA-ACATCC-AATAAAGGGCCTATTTTATTCATCTATGTTTGGTACTGAAAACCACTGCATGGCCAG-ATCAGGAAGGAGGCCTGGT--ACAACTCCCAAGGAGGCACATGTCCCTCAGGTGGGCTTCGTGTCCCAGAAACTC--------------CGGGGAAGGGGTGGAGAGGTGCCTTCTGGGTGAGCTGGTCTCCTCTGGCTTTTCTTGTCCCCTAGAGCTCCCAACCAGGAGACAGAGC------ACAGCC--TGGCCAGGGAGCAGTATCTCCTACTGCGCTTGCTGTGA---GCCAGCCACTCTGC-CCTCTTTCAGGAAT-TACAAAATCCACAGGTACCC-GGCATCGttatttat-ttatttattcatttatGTGGCATG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       379048 623 -   4457520 tgagcattcttatataagtctttttgtggacatttgcattcatttctcttgcgtacatgcttagga-tggaatttctgaaggtaggcatatatttagctttagtagaaactgccaaaca-ggtttccaatatgcttatacaactttatgctactgccagc-----ttgacagttcttgtacttctacatcttttccaatactcagtatAACACAGCATTTAACTTTAAATAGAGATAAAATGCTGG-AAAGATCCAAAGAAGTGTGCGTGTTCCTGAAGG-ACATCC-AATAAAGGGCCTCTTTTATTCATCTATTTCTGGCACTGACAACCACTGCATGGCCAG-ATCAGGAAGGAGGCCTGGT--ACAACTCCCAAGGAGGCACGTGTCCCTCAGGTGGGCTTCGTGTCCCAGGAACTC--------------CGGGGAAGGGGTGGAGAGGTGCCTTCTGGGCGAGCTGGTCTCCTCTGGCTTTTCTTGTCCCCTAGGGTTCCCAACCAGGAGACAGAGC------ACAACC--TGGCCAGGGAGCAGTATCTCCTACTGAGCTTGCTGTGA---GCCAGCCACTCTGC-CCTCTTTCAGGAAT-TACAAAATCCATAGGTATGC-GGCATTGTTAT-----TTATTTATTCATTTTTGCGGCATG
i colAng1.NW_012115278v1    N 0 C 0
s canFam3.chr3               59901715 632 -  91889043 tgcacatccttatacaagtttttctgtgaacacatgcattcactcctcttgtgtatatacctaggagtggaatttcaaaaggtaggcatatgtttagccttaatgaa-------aaacatgttttccaatgtggttataccactctatactcccaccagcattgtttgacagttctggtacaaccacaccttt-ctgatactc---acatttaatctcttaacttttagcAGAGATAAAATAATGG-AAATATCCAGAATAATATGCATGTTCCTGAGGA-ACACTC-AGGAGAGCATTGATTTTGTTCATGTAATTCTGGTACTGGAAGCCATGACATGGCCAGAATGAAGCAAGAAGCCTGGCAGACCCCTCCCAATAAAGTGCATGTCCCTTTGGTGAGCTATGCATCCCATACCCTCAAGTCCCAGGAGGATGAGTAGGGATTGAGAAGTTTCCTTCTGGACATGCTG-TTTCTTCTGGACTTTTTCACCCCC--GGGCCTCTGAGTCAGAGAGAGAGAACTCTGACACCCAGTGGCCA-GAAGTAGTGTCTCCTGCCTCACCCTCTATGAGGGGCCAGTCCTTTGGCTCCTCTTTCAGGAAT-TCTGAAATCCATAGGTCCTT-GATATGATCATTTAT-TAA----------------ACATG
i canFam3.chr3              C 0 C 0
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=573040.000000
s hg38.chr15_KI270851v1_alt    132917 101 +    263054 ----------GTTTTCCTCAGCTCTGTTGGATGG-GT-CTCTGTGAAGGGAGCTTGGTGGGGGC--GAGTGGCCGCTCCCTGGAGGAGGCAGGCCCCTGGTCAGGATCTTTGGGG
s panTro5.chr15               9389945 101 +  83230942 ----------GTTTTCCTCAGCTCTGTTGGATGG-GT-CTCTGTGAAGGGAGCTTGGTGGGGGC--GAGTGGCCCCTCCCTGGAGGAGGCAGGCCCCTGGTCAGGATCTTTGGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25876147 101 +  99763055 ----------GTTTTCCTCAGCTCTGTTGGATGG-GT-CTCTGTGAAGGGAGCTTGGTGGGGGC--GAGTGGCCCCTCCCTGGAGGAGGCAGGCCCCTGGTCAGGATCTTTGGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        59353 101 -    281578 ----------GTTTTTCTCAGCTCTGTTGGATGG-GT-CTCTGTGAAGGGAGCTTGGTGGGGGC--GAGTGGCCCCTCCCTGGAGGAGGCAGGCCCCTGGTCAGGATCTCTGGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70915512 101 + 121039945 ----------GTTTTCCTCAGCTCTGTTGGATGG-GT-CTCTGTGAAGGGAGCTTGGTGGGGAC--GAGTGGCCCCTCCTTGGAGGAGGCAGGCCTCTGGTCAGGATCTTTGGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164217773 101 - 169600520 ----------GTTTTCCTCAGCTCTGTCGGATGG-GT-CTCTGTGAAGGGAGCTGGGTGGGGGC--GAGTGGCCCCTCCCTGGAGGAGGCAGCCCCCTGGTCAGGATCTTTGGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165537204 101 - 171882078 ----------GTTTTCCTCAGCTCTGTCGGATGG-GT-CTCTGTGAAGGGAGCTGGGTGGGGGC--GAGTGGCCCCTCCCTGGAGGAGGCAGCCCCCTGGTCAGGATCTTTGGGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       377281 101 +   2379783 ----------GTTTTTCTCAGCTCTGTGGGATGG-GTCCTCTGTGAAGGGAGCT-GGTGGGGGC--GGGTGGCCCCTCCCTGGAGGAGGCAGCCCCCTGGTCAGGATCTTTGGGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       355757 103 +   4116138 ----------GTTCTCCTCAGCTCTGTCGGATGGCGT-CTCTGTGAA-GGAGCTGGGTGGGGGCCGAGTTGGCCGCCCTCTGGAGGAGGCCAGCCCCTGGTCAGGATCTTTGGGG
i cerAty1.NW_012001462v1    N 0 I 151
s chlSab2.chr26              53758973 100 +  58131712 ----------GTTTTCCTCAGCTCTGTCAGATGG-GT-CTCTGTGAAGGGAGC-GGGTGGGGGT--GAGTGGCCCCTCCCTGGAGGAGGCAACCCTCTGGTCAGGATCTTTGGGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       397027 101 -   3636681 ----------GTTTTCCTCAGCTCTGTCGGATGG-GT-CTCTGTGAAGGGAGCTGGGTGGGGGC--GAGTGGCCCCTCCCTGGAGGAGGCAACCCCTTGGTCAGGATCTTTGGGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       379671 101 -   4457520 ----------GTTTTCCTCAGCTCTGTCGGATGG-GT-CTCTGTGAAGGGAGCTGGGTGGGTGC--AAGTGGCCCCTCCCTGGAGGAGGCAGCCCCCTGGTCAGGATCTTTGGGG
i colAng1.NW_012115278v1    C 0 C 0
s canFam3.chr3               59902347  99 -  91889043 ACTTAATGCAAAGTCTCCCAGCTCTGTAGGATGG-GT-CTCAGTGAGGGGAGCCAGCACCTAGA--AGGT-GTCCTTTCTTGAAGGA-------CTTTG----AAGTCTTTGGGC
i canFam3.chr3              C 0 C 0
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=615726.000000
s hg38.chr15_KI270851v1_alt    133018 129 +    263054 CTCCAGGTCTCATAAGT-GGGGGGCCAGGCTCCCTAGAGAAACCCTTCTTGGCTAGGGCTGGGGAGCCCACCAGAGTGACCCAATCAGTTCTCAGGGCCTGTGATGGGGCCAAGTGGTTTTGAGAAGCCA
s panTro5.chr15               9390046 129 +  83230942 CTCCAGGTCTCATAAGT-GGGGGGCCAGGCTCCCTAGAGAAACCCTTCTTGGCTAGGGCTGGGGAGCCCACCAGAGTGACCCAATCAGTTCTCAGGGCCTGTGATGGGGCCAAGCGGTTTTGAGAAGCCG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25876248 129 +  99763055 CTCCAGGTCTCATAAGT-GGGGGGCCAGGCTCCCTAGAGAAACCCTTCTTGGCTAGGGCTGGGGAGCCCACCAGAGTGACCCAATCAGTTCTCAGGGCCTGTGATGGGGCCAAGTGGTTTTGAGAAGCCG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        59454 130 -    281578 CTCCAGGTCTCATAAGTGGGGGGGCCAGGCTCCCTAGAGAAACCCTTCTTGGCTAGGGCTGGGGAGCCCACCAGAGTGACCCAATCAGTTCTCAGGGCCTGTGATGGGGCCAAGTGGTTTTGAGAAGCCG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70915613 128 + 121039945 CTCCAGGTCTCATGAGT--GGGGGCCAGGCTCCCTAGAGAAACCCTTCTTGGCTAGGGCTGGGGAGCCCACCAGAGTGACGCAATCAGTTCTCAGTGCCTGTGATGGGGCCAAGTGGTTTTGAGAAGCCG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164217874 128 - 169600520 CTTCAGGTCTCATGAGT--TAGGGCCAGTCTCCCTAGAGAAACCCTTCTTGGCTAGGGCTGGGGAGCCCACCAGAGTGACCCAATCAGTTCTCAGGGCCTGTGGTGGAGCCAAGTGGTTTCGAGAAGGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165537305 128 - 171882078 CTTCAGGTCTCATGAGT--TAGGGCCAGTCTCCCTAGAGAAACCCTTCTTGGCTAGGGCTGGGGAGCCCACCAGAGTGACCCAATCAGTTCTCAGGGCCTGTGGTGGAGCCAAGTGGTTTCGAGAAGGCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       377382 128 +   2379783 CTCCAGGTCTCATGAGT--TAGGGGCAGTCTCCCTAGAGAAACCCTTCTTGGCTAGGGCTGGGGAGCCCACCAGAGTGACCCAATCAGTTCTCAGGGCCTGTGGTGGAGCCAAGTGGTTTCGAGAAGGCC
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53759073 128 +  58131712 CTCCAGGTCTCATGAGT--TAGGGCCAGTCTCCCTAGAGAAACCCTTCTTGGCTAGGGCTGGGGAGCCCACCGGAGTGACCCAATCAGTTCTCAGGGCCTGTGGTGGAGCCAAGTAGTTTCGAGAAGGCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       397128 128 -   3636681 CTCCAGGTTTCATGAGT--TAGGGGCAGTCTCCCTAGGGAAACCCTTCTTGGCTAGGGCTGGGGAGCCCACCAGAGTGACCCAATCAGTTCTCAGGGCCTGTGGTGGAGCCAAGTGGTTTCGAGAAGGCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       379772 128 -   4457520 CTCCAGGTCTCATGAGT--TAGGGCCAGTCTCCCTAGGGAAACCCTTCTTGGCTAGGGCTGGGGAGCCCACCAGAGTGACCCAATCAGTTCTCAGGGCCTGTGGTGGAGCCAAGTGGTTTCGAGAAGGCC
i colAng1.NW_012115278v1    C 0 C 0
s canFam3.chr3               59902446  79 -  91889043 CTCCAGGTCTTGTGACT---CGGGTGATGTGCCCCAGAAAAAGCCTTCT---------------------------------------------GGGCATGTGGTGGAGCCAAGTGGCT--GAGAGGCA-
i canFam3.chr3              C 0 C 0
e cerAty1.NW_012001462v1       355860 151 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=209720.000000
s hg38.chr15_KI270851v1_alt    133147 34 +    263054 GTGTTCAGCTCCATCCTAAAGAGCACTCATGCAC
s panTro5.chr15               9390175 34 +  83230942 GTGTTCAGCTCCATCCTAAAGAGCACTCATGCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25876377 34 +  99763055 GTGTTCAGCTCCATCCTAAAGAGCACTCATGCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        59584 34 -    281578 GTGTTCAGCTCCATCCTAAAGAGCACTCATGCAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70915741 34 + 121039945 GTGTTCAGCTCCATCCTAAAGAGCACTCATGCAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164218002 34 - 169600520 GTGTTCAGCCCCATCCTAAAGAGCACTCAAGCAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165537433 34 - 171882078 GTGTTCAGCCCCATCCTAAAGAGCACTCAAGCAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       377510 34 +   2379783 GTGTTCAGCCCCATCCTAAAGAGCACTCAAGCAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       356011 34 +   4116138 GTGTCCAGCCCCATCCTAAAGAGCACTCATGCAC
i cerAty1.NW_012001462v1    I 151 I 74
s chlSab2.chr26              53759201 34 +  58131712 GTGTTCAGCTACAACCTAAAGAGCACTCATGCAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       397256 34 -   3636681 GTGTTCAGCCCCATCCTAAAGAGCACTCAAGCAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       379900 34 -   4457520 GTGTTCGGCTCCATCCTAAAGATCACTCATGCAA
i colAng1.NW_012115278v1    C 0 C 0
s canFam3.chr3               59902525 34 -  91889043 GTGTTTGTCCCCGTTCTAAAAAACACTCATGCAA
i canFam3.chr3              C 0 C 0
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=41415.000000
s hg38.chr15_KI270851v1_alt    133181 12 +    263054 GTTGAG------------------------------------------------------------------GAGGAG
s panTro5.chr15               9390209 12 +  83230942 GTTGAG------------------------------------------------------------------GAGGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25876411 12 +  99763055 GTTGAG------------------------------------------------------------------GAGGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        59618 12 -    281578 GTTGAG------------------------------------------------------------------GAGGAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70915775 12 + 121039945 GTTGGA------------------------------------------------------------------GAGGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164218036 12 - 169600520 GTTGGG------------------------------------------------------------------GAGGAG
i rheMac8.chr7              C 0 I 38
s macFas5.chr7              165537467 12 - 171882078 GTTGGG------------------------------------------------------------------GAGGAG
i macFas5.chr7              C 0 I 33
s macNem1.NW_012011934v1       377544 12 +   2379783 GTTGGG------------------------------------------------------------------GAGGAG
i macNem1.NW_012011934v1    C 0 I 38
s chlSab2.chr26              53759235 78 +  58131712 GTTGGGGAGGAGGACTAGGGGTGCACAGCTCTGAGCTGAGAGGAGGACTAGGGGTGCACAGCTCTGAGCTGAGAGGAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       397290 12 -   3636681 GTTGGG------------------------------------------------------------------GAGGAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       379934 12 -   4457520 GTTGGG------------------------------------------------------------------GAGGAG
i colAng1.NW_012115278v1    C 0 C 0
s canFam3.chr3               59902559 12 -  91889043 GTTTGA------------------------------------------------------------------GAGGAG
i canFam3.chr3              C 0 C 0
e cerAty1.NW_012001462v1       356045 74 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=8017.000000
s hg38.chr15_KI270851v1_alt    133193 4 +    263054 GGCC
s panTro5.chr15               9390221 4 +  83230942 GGCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25876423 4 +  99763055 GGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        59630 4 -    281578 GGCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70915787 4 + 121039945 GGCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165537512 4 - 171882078 GACT
i macFas5.chr7              I 33 I 1
s chlSab2.chr26              53759313 4 +  58131712 GACT
i chlSab2.chr26             C 0 I 34
s manLeu1.NW_012102332v1       397302 4 -   3636681 AACG
i manLeu1.NW_012102332v1    C 0 I 34
s colAng1.NW_012115278v1       379946 4 -   4457520 AACT
i colAng1.NW_012115278v1    C 0 I 34
s canFam3.chr3               59902571 4 -  91889043 GGCT
i canFam3.chr3              C 0 C 0
e cerAty1.NW_012001462v1       356045 74 +   4116138 I
e macNem1.NW_012011934v1       377556 38 +   2379783 I
e rheMac8.chr7              164218048 38 - 169600520 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=1506946.000000
s hg38.chr15_KI270851v1_alt    133197 310 +    263054 --GGGGTGCACAGCTCTGACCTGAGTCAGACCCACCT---------------------CAGGACTTAGCCCAGC---AGGAGGCCCAGAGTCACTGACCATAAAACGAGCAGATGCCTCCCCCGTGCTGATGGAGATGAGTCTTGGGCATCAACTCTAATAATTTCTAACTGCACCCAGAAATACTGATTCACACAG-CAACTAGTGAATAATAGCCTTTTAGAGCT-AAAAAA----GCCTC-ATA-----TATTATAAATTAACATATGC-------ATTTTACACAAACTAGAGGCACCGTGGTGGGCCAGCAGCAGCCTGTTCAGGGGCCACAACAAGGGAGATTGGATTT
s panTro5.chr15               9390225 315 +  83230942 --GGGGTGCACAGCTCTGACCTGAGTCAGACCCACCT---------------------CAGGACTGAGCCCAGC---AGGAGGCCCAGAGTCACTGACCATAAAACGAGCAGATGCCTCCCCCGTGCTGATGGAGATGAGTCTTGGGCATCGACTCTAATAATTTCTAACTGCACCCAGAAATACTGATTCACACAG-CAACTAGTGAATAATAGCCTTTTAGAGCT-AAAAAA----GCCTC-ATATGATTTATTATAAATTAACGTATGC-------ATTTTACACAAACTAGAGGCACCGTGGTGGGCCAGCAGCAGCCTGTTCAGGGGCCACAACAAGGGAGATTGGATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25876427 315 +  99763055 --GGGGTGCACAGCTCTGACCTGAGTCAGACCCACCT---------------------CAGGACTGAGCCCAGC---AGGAGGCCCAGAGTCACTGACCATAAAACGAGCAGATGCCTCCCCCGTGCTGATGGAGATGAGTCTTGGGCATCGACTCTAATAATTTCTAACTGCACCCAGAAATACTGATTCACACAG-CAACTAGTGAATAATAGCCTTTTAGAGCT-AAAAAA----GCCTC-ATATGATTTATTATAAATTAACGTATGC-------ATTTTACACAAACTAGAGGCACCGTGGTGGGCCAGCAGCAGCCTGTTCAGGGGCCACAACAAGGGAGATTGGATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        59634 316 -    281578 --GGGGTGCACAGCTCTGACCTGAGTCAGACCCACCT---------------------CAGGACTGAGCCCAGC---AGGAGGCCCAGAGTCACTGACCATAAAACCAGCAGATGCCTCCCCCGTGCTGATGGAGATGAGTCTTGGGCATCAACTCTAATAATTTCTAACTGCACCCAAAAATACTGATTCACACAG-CAACTAGTGAATAATAGCCTTTTAGAGCTAAAAAAA----GCCTC-GTATCATTTATTATAAATTAACATGTGC-------ATTTTACACAAACTAGAGGCATCGTGGTGGGCCAGCAGCAGCCTGTTCAGGGGCCACAACAAGGGAGATTGGATTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70915791 319 + 121039945 --GCAGTGCACAGCTCTGAGCTGAGTCAGACCCACCT---------------------CAGGACTGAGCCCAGCAGAAGGAGGCCCAGAGTCACCCACCATAAAAAGAGCAGATGCCTCCCCCGTGCTGGTGGAGATGAGTCTTGGGCATCAACTCTAATAATTTCTAACTGCACCCAGAAATACTGATTCACACAGCCAACTAGTGAATAATAGCCTTTTAGAGTTAAAAAAA----ACCTT-GTATGATTTATTATAAATTAACATATGC-------ATTTTACACAAACTAGAGGCACGGTGGTGGGCCAGCAGCAGCCTGTTCAGGGGCCACAGCAAGGG-GATTGGATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164218086 317 - 169600520 --GGGGTGCACAGCTCTGAGCTGAGTCAGACCCACCT---------------------CAGGACTGAGCCCAGCAGAAGGAGGCCCAGAGTCACTGACCATAAAAGGAGCAGATGCCTCCCCCGTGCTGGTTGAGATGAGTCTTGGGCATCAACTCTGATAATTTCTAATTACACCCAGAAATACTGATTCACACAG-CAACTAGTGAATAATAGCCTTTTAGAGCT-AAAAAA----GCCTT-GTATGATTTATTGTAAGTTGACATATGC-------GTTGTACACAAACTAGAGGCACCGAGGTCGGCCAACAGCAGCCTAATGAGGGGCCACAGCCAGGA-GATTGGATTT
i rheMac8.chr7              I 38 C 0
s macFas5.chr7              165537517 316 - 171882078 --GGGGTGCACAGCTCTGAGCTGAGTTAGACCCACCT---------------------CA-GACTGAGCCCAGCAGAAGGAGGCCCAGAGTCACTGACCATAAAAGGAGCAGATGCCTCCCCCGTGCTGGTTGAGATGAGTCTTGGGCATCAACTCTGATAATTTCTAATTACACCCAGAAATACTGATTCACACAG-CAACTAGTGAATAATAGCCTTTTAGAGCT-AAAAAA----GCCTT-GTATGATTTATTGTAAGTTGACATATGC-------GTTGTACACAAACTAGAGGCACCGAGGTCGGCCAACAGCAGCCTAATGAGGGGCCACAGCCAGGA-GATTGGATTT
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011934v1       377594 317 +   2379783 --GGGGTGCACAGCTCTGAGCTGAGTCAGACCCACCT---------------------CAGGACTGAGCCCAGCAGAAGGAGGCCCAGAGTCACTGACCATAAAAGGAGCAGATGCCTCCCCCGTGCTGGTTGAGATGAGTCTTGGGCATCAACTCTGATAATTTCTAATTACACCCAGAAATACTGATTCACACAG-TAACTAGTGAATAATAGCCTTTTAGAGCT-AAAAAA----GCCTT-GTATGATTTATTGTAAGTTGACATATGC-------GTTGTACACAAACTAGAGGCACCGAGGTTGGCCAACAGCAGCCTAATGAGGGGCCACAGCCAGGA-GATTGGATTT
i macNem1.NW_012011934v1    I 38 C 0
s chlSab2.chr26              53759351 315 +  58131712 --GGGGTGCACAGCTCTGAATTGAGTCAGACTCACCT---------------------GAGGACTGAGCCCAGCAGGAGGAGGCC--AAGTCACTAACCATAAAAGGAGCAGATGCCTCCCCTGGGCTGGTTGAGATGATTCTTGGGCATCAACTCTAATAATTTCTAATTATACCCAGAAATACTGATTCACACAG-CAACTAGTGAATAATAGCCTTTTAGAGCT-AAAAAA----GCCTT-GTATGATTTATTGTAAGTTGACATATGC-------ATTTTACACAAACTAGAGGCACCGTGGTAGGCCAGCGGCAGCCTGTTCAGGggccacagcaagga-gattggattt
i chlSab2.chr26             I 34 C 0
s manLeu1.NW_012102332v1       397340 315 -   3636681 --GGGTTGCACAGCTCTGAGCTGAGTCAGACCCACCT---------------------CAGGACTGAGCCCAGCAGAAGGAGGCCCAGAGTCACTGACCATAAAAGGAACAGATGCCTCCCCCGTGCTGGTTGAGATGATTCTTGGGCATCAACTCTGATAATTTCTAATTATACCCAGAAATACTGATTCACACAG-CAACTAGTGAATA--AGCCTTTTAGAGTT-AAAAAA----GCCTT-GTATGATGTATTATAAGTTGACATATGC-------GTTGTACACAAACTAGAGGCACCGAGGTCGGCCAACAGCAGCCTAATGAGGGGCCACAGCCAGGA-GATTGGATTT
i manLeu1.NW_012102332v1    I 34 C 0
s colAng1.NW_012115278v1       379984 315 -   4457520 --GGGGTGCACAGCTCTGAGCTGAGTCAGACCCACCT---------------------CAGGACTGAGCCCAGCAGAAGGAGGCCCAGAGTCACTGACCATAAATGGAACAGATGCCTCCCCCGTGCTGGTTGAGATGATTCTTGGGCATCAACTCTAATAATTTCTAACTACACCCAGAAATACTGATTCACACAG-CAACTAGTGAATA--AGCCTTTTAGAGTT-AAAAAA----GCCTT-GTATGATTTATTATAAGTTGACATATGC-------GTTGTATACAAACTAGAGGCACCGAGGTCGGCCAACAGCAGCCTATTGAGGGGCCACAGCCAGGA-GATTGGATTT
i colAng1.NW_012115278v1    I 34 C 0
s canFam3.chr3               59902575 336 -  91889043 TGGGGCTGTGCAACT------GAAGTTAGAAGCATTTTCAAATGGAGCTAGCTATGAGCAAGGCTGAATGGAAAAGAGTGAGGTCCAGTATCTCTGACCTTGAAAGAAACAAAGCCTTTCCAGGTgtaggtctaggtgagtcttgagcatctactct-ataatttctaacaatacccag-aatactgGCCCCCAAAC-CAACTAGTGAAT-------TTCTAGAGCT-AAAAAAAGGGGCCTTGGGAAGATCTGTTCTAAATCAACACATGCATTATGTATTTTATACAAACTGGGGGCTTCATAGC-ATCTAGCAGCAGTCTGTTCAGAGGTCATGGCAAGTG-GATTAGATTT
i canFam3.chr3              C 0 I 211
e cerAty1.NW_012001462v1       356045  74 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=6980.000000
s hg38.chr15_KI270851v1_alt    133507 2 +    263054 CC
s panTro5.chr15               9390540 2 +  83230942 CC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25876742 2 +  99763055 CC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        59950 2 -    281578 CC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70916110 2 + 121039945 CC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164218403 2 - 169600520 CT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165537833 2 - 171882078 CT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       377911 2 +   2379783 CT
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53759666 2 +  58131712 cc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       397655 2 -   3636681 CT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       380299 2 -   4457520 CT
i colAng1.NW_012115278v1    C 0 C 0
e canFam3.chr3               59902911 211 -  91889043 I
e cerAty1.NW_012001462v1       356045 74 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=425742.000000
s hg38.chr15_KI270851v1_alt    133509 83 +    263054 TTAAGTGCAATGGGAGTTACTGGCAA--GGCTTTAAGGTTTTAGCCACAGGAAAGATGAAAGTATTTTAGAGCAATGTGGGTGGA
s panTro5.chr15               9390542 83 +  83230942 TTAAGTGCAATGGGAGTTACTGGCAA--GGCTTTAAGGTTTTAGCCACAGGAAAGATGAAAGTATTTTAGAGCAATGTGGGTGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25876744 83 +  99763055 TTAAGTGCAATGGGAGTTACTGGCAA--GGCTTTAAGGTTTTAGCCACAGGAAAGATGAAAGTATTTTAGAGCAATGTGGGTGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        59952 83 -    281578 TTAAGTGCAATGGGAGTTACTGGCAA--GGCTTTAAGGTTTTAGCCACAGGAAAGGTGAAAGTATTTTAGAGCAATGTGGGTGGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70916112 83 + 121039945 TTAAGTGCAATGGGAGTTACTGGCTA--GGCTTTAAGGTTTTAGCCACAGGAAAGATGAATGTATTTCAGAGTAATGTGGGTGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164218405 83 - 169600520 TCAAGTGCAATGGGAGTTACTGGCTA--ATCTTTAAGGTTTTAGCCACAGGAAAGATCAATGTATTTCAGAGTAATATGGGTGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165537835 83 - 171882078 TCAAGTGCAATGGGAGTTACTGGCTA--ATCTTTAAGGTTTTAGCCACAGGAAAGATGAATGTATTTCAGAGTAATATGGGTGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       377913 83 +   2379783 TCAAGTGCAATGGGAGTTACTGGCTA--ATCTTTAAGGTTTTAGCCACAGGAAAGATCAATGTATTTCAGAGTAATATGGGTGGA
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53759668 82 +  58131712 ttaagtgcaatgggagttactggcta--ggctttaagGTTTTAGCCACAGGAAAGATGAATGTATTTCAGAGTAATAT-GGTGGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       397657 83 -   3636681 TCAAGTGCAATGGGAGTTACTGGCTA--ATCTTTAAGGTTTTAGCCACAGGAAAGATCAATGTATTTCAGAGTAATATGGGTGGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       380301 83 -   4457520 TCAAGTGCAATGGGAGTTACTGGCTA--GGCTTTAAGGTTTTAGCCACAGGAAAGATCAATGTATTTCAGAGTAATATGGGTGGA
i colAng1.NW_012115278v1    C 0 I 921
s canFam3.chr3               59903122 84 -  91889043 TTAAGTGCAATGGGAGTCATAGGGTATGGGCTTTAAGGCTTTAGGAACA-GAAAGTTGAATATATTTTAGGGTGATATGGGAAAA
i canFam3.chr3              I 211 C 0
e cerAty1.NW_012001462v1       356045 74 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=143690.000000
s hg38.chr15_KI270851v1_alt    133592 30 +    263054 TTCAAAGTGAGGTTTTGAACTAGATCAG-tt
s panTro5.chr15               9390625 31 +  83230942 TTCAAAGTGAGGTTTTGAACTAGATCAAttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25876827 30 +  99763055 TTCAAAGTGAGGTTTTGAACTAGATCAA-tt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        60035 30 -    281578 TTCAAAGTGAGGTTTTGAACTAGATCAA-tt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70916195 30 + 121039945 TTCAAAATGAGGTTTAGAACTAGATCAA-tt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164218488 30 - 169600520 TTCAAAATGAGGTTTAGAACTAGATCAA-TT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165537918 30 - 171882078 TTCAAAATGAGGTTTAGAACTAGATCAA-TT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       377996 26 +   2379783 TTCAAAATGAGGTTTAGAACTAG----A-TT
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53759750 30 +  58131712 TTCAAAATGAGGTTTAGAACTAGATCGA-TA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       397740 30 -   3636681 TTCAAAATGAGGTTTAGAACTAGATCAA-TT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       381305 30 -   4457520 TTCAAAATGAGGTTTAGAACTAGATCAA-TA
i colAng1.NW_012115278v1    I 921 C 0
s canFam3.chr3               59903206 30 -  91889043 TTGAAAATGAGGTTTTGAGTTAGATTCA-TT
i canFam3.chr3              C 0 I 11399
e cerAty1.NW_012001462v1       356045 74 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=66336.000000
s hg38.chr15_KI270851v1_alt    133622 18 +    263054 tttttttttttttttttt
s panTro5.chr15               9390656 18 +  83230942 tttttttttttttttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              25876857 18 +  99763055 tttttttttttttttttt
i panPan2.chr15             C 0 I 16210
s gorGor5.CYUI01000141v1        60065 16 -    281578 tttttttttttttttt--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70916225 18 + 121039945 tttttttttttttttttt
i nomLeu3.chr6              C 0 I 10
s rheMac8.chr7              164218518 18 - 169600520 AAttttttttttttttat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165537948 18 - 171882078 AAttttttttttttttat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       378022 18 +   2379783 AAttttttttttttttat
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53759780 18 +  58131712 AAtttttttttttttttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       397770 18 -   3636681 AAtttttttttttttttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       381335 18 -   4457520 AAtttttttttttttttt
i colAng1.NW_012115278v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e cerAty1.NW_012001462v1       356045 74 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=-11689.000000
s hg38.chr15_KI270851v1_alt    133640 4 +    263054 agac--------
s panTro5.chr15               9390674 4 +  83230942 acac--------
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        60081 4 -    281578 agac--------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70916253 4 + 121039945 agac--------
i nomLeu3.chr6              I 10 C 0
s rheMac8.chr7              164218536 2 - 169600520 --at--------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165537966 2 - 171882078 --at--------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       378040 2 +   2379783 --at--------
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53759798 4 +  58131712 --tttt------
i chlSab2.chr26             C 0 I 20169
s manLeu1.NW_012102332v1       397788 4 -   3636681 --atat------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       381353 8 -   4457520 --tt--ttatat
i colAng1.NW_012115278v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e panPan2.chr15              25876875 16210 +  99763055 I
e cerAty1.NW_012001462v1       356045 74 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=196528.000000
s hg38.chr15_KI270851v1_alt    133644  53 +    263054 agagtctgactcttattgcccaggctggagtgcagtggtgct------------------------------------------------------------------atcttggctca
s panTro5.chr15               9390678  53 +  83230942 agagtctgactcttattgcccaggctggagtgcagtggtgct------------------------------------------------------------------atcttggctca
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        60085  53 -    281578 agagtctgactcttattgcccaggctggagtgcagtggtgct------------------------------------------------------------------atcttggctca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70916257 119 + 121039945 agagtctgactcttattgcccaggctggagtgcagtggtgctatctcTCtttttttttttttgagacggagtctttctccgtcccccaggctggagtgcagtggcgcgatctcggctca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164218538  53 - 169600520 ggagtctgactcttattgccaaggctggagtgcagtggtgct------------------------------------------------------------------atcttggctca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165537968  53 - 171882078 ggagtctgactcttattgccaaggctggagtgcagtggtgct------------------------------------------------------------------atcttggctca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       378042  53 +   2379783 ggagtctgactcttattgccaaggctggagtgcagtggtgct------------------------------------------------------------------atcttggctca
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53779971  53 +  58131712 ggagtctgactcttattgccaaggctggagtgcagtggtgct------------------------------------------------------------------atcttggctca
i chlSab2.chr26             I 20169 C 0
s manLeu1.NW_012102332v1       397792  53 -   3636681 ggagtctgactcttattgccaaggctggagtgcagtggtgct------------------------------------------------------------------atcttggctca
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       381361  53 -   4457520 agagtctgactctcattgccaaggctggagtgcagtggtgct------------------------------------------------------------------atcttggctca
i colAng1.NW_012115278v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e panPan2.chr15              25876875 16210 +  99763055 I
e cerAty1.NW_012001462v1       356045  74 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=738810.000000
s hg38.chr15_KI270851v1_alt    133697 165 +    263054 ctgcaacctctgccacccaggttcaagcaattctcctgcctcagcctcctgaatagctgggattacaggcacctgccaccaagcccggcaaa-tttttgtattttt-------acggggtttcaccatcttggccaggcagttcttgaactcctgacctcgtgatccacctgc
s panTro5.chr15               9390731 172 +  83230942 ctgcaacctctgccacccaggttcaatcaattctcctgcctcagcctcctgaatagctgggattacaggcacctgccaccaagcccggcaaa-tttttgtatttttagtagagacggggtttcaccatcttggccaggcagttcttgaactcctgacctcgtgatccacctgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74011788 171 -  99763055 ctgcaacctctgccacccaggttcaatcaattctcctgcctcagcctcctgaatagctgggattacaggcacctgccaccaagcccggcaaa--ttttgtatttttagtagagacggggtttcaccatcttggccaggcagttcttgaactcctgacctcgtgatccacctgc
i panPan2.chr15             I 59258 C 0
s gorGor5.CYUI01000141v1        60138 172 -    281578 ctgcaacctctgccacccaggttcaagcaattctcctgcctcagcctcctgaatagctgggattacaggcacctgccaccaagcccggctaa-tttttgtatttttagtagagactgggtttcaccatcttggccaggcagttcttgaactcctgacctcgtgatccacctgc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70916376 173 + 121039945 ctgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgcgtagctgggactacaggcgcctgccacaacgcctggccaattttttgtatttttagtagagacgaggtttcaccgtgttagccagtatggtctcgatctcctgacctcgtgatccgcccgc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164218591 169 - 169600520 cggcaacctctgccgcccgggttcaagcagtt---ctgccttagcctcctgagtagctgggattacaggtacctgccaccatgcctggctaa-tttttgtatttttggcagagacggggtttcaccatcttggccaggctggtcttgaactcctgacctcgtgatccacccgc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165538021 169 - 171882078 cggcaacctctgccgcccgggttcaagcagtt---ctgccttagcctcctgagtagctgggattacaggtacctgccaccatgcctggctaa-tttttgtatttttggcagagacggggtttcaccatcttggccaggctggtcttgaactcctgacctcgtgatccacccgc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       378095 169 +   2379783 cggcaacctctgctgcccgggttcaagcagtt---ctgccttagcctcctgagtagctgggattacaggtacctgccaccatgcctggctaa-tttttgtatttttggtagagacggggtttcaccatcttggccaggctggtcttgaactcctgacctcgtgatccacccgc
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53780024 169 +  58131712 cagcaacctctgccgcccgggttcaagcagtt---ctgccttagcctcctgagtagctgggattacaggtacctgccaccatgcctggctaa-tttttgtatttttggtagagacggggtttcaccatcttggccaggctggtcttgaactcctgatctcgtgatctacacgc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       397845 169 -   3636681 cggcaacctctgccgcccgggttcaagcagtt---ctgccttagcctcctgagtagctgggattacaggtacctgccaccatgcctggctaa-tttttgtatttttggtagagacggggtttcaccatcttggccaggctggtcttgaactcctgacctcgtgatccacctgc
i manLeu1.NW_012102332v1    C 0 T 6798
s colAng1.NW_012115278v1       381414 169 -   4457520 tggcaacctctgccgcccgggttcaagcagtt---ctgccttagcctcccaagtagctgggattacaggcacctgccatcatgcctggctaa-tttttgtatttttagtagagacggggtttcaccatcttggccaggctggtcttgaactcctgacctcatgattcatctgc
i colAng1.NW_012115278v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e cerAty1.NW_012001462v1       356045  74 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=78016.000000
s hg38.chr15_KI270851v1_alt    133862 19 +    263054 cttggcatcccaaagtATT
s panTro5.chr15               9390903 19 +  83230942 cttggcatcccaaagtATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74011959 19 -  99763055 cttggcatcccaaagtATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        60310 19 -    281578 cttggcatcccaaagtATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70916549 19 + 121039945 cttggcctcccaaagtgct
i nomLeu3.chr6              C 0 M 1738
s rheMac8.chr7              164218760 19 - 169600520 gttggcctcccaaagtATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165538190 19 - 171882078 gttggcctcccaaagtATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       378264 17 +   2379783 gttggcctcccaaagtA--
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53780193 19 +  58131712 gttggcctcccaaagtATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       391216 19 -   3636681 gttggcctcccaaagtATT
i manLeu1.NW_012102332v1    T 6798 C 0
s colAng1.NW_012115278v1       381583 19 -   4457520 gttggcctcccaaagtATT
i colAng1.NW_012115278v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e cerAty1.NW_012001462v1       356045 74 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=1144002.000000
s hg38.chr15_KI270851v1_alt    133881 328 +    263054 AAttttttttttttttt-----ttgagacgaagtcttgctgtgtcgcccaggctggagtgcagtggcccgatgtcggctcactgcaagctccgcctcccaggttcacgccagtctcctgactcagcctcccgagtagctgggactacaggcgcccgccacgatgcccagctaattttttgta-ttttttttagtagagatggggtttcaccgtgttagccagggtggtctcaatctcctgacttcctgatctgtccgccttggcctcccaaagtgctgggattacaggggtaagccaccacgcccCTCCAAGTATTAAATTTTTTATTTAAAAA
s panTro5.chr15               9390922 331 +  83230942 AAtttctttttttttttcttc-ttgagacgaagtcttgctgtgtcgcccaggctggagtgcagtggcccgatgtcggctcactgcaagctccgccttccaggttcacgccagtctcctgactcagcctcccgagtagctgggactacaggcacccgccacgatgcccagctaattttttgta--tttttttggtagagatggcgtttcaccgttttagccagggtggtctcaatctcctgacttcctgatctgtccgccttggcctcccaaagtgctgggattacaggggtaagccaccacgcccCTCCAAGTATTAAATTTTTTATTTAAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74011978 332 -  99763055 AAttcttttttttttctttttgtttagacgaagtcttgctgtgtcgcccaggctggagtgcagtggcccgatgtcggctcactgcaagctccgcctcccaggttcacgccagtctcctgactcagcctcccgagtagctgggactacaggcgcccgccacgatgcccagctaattttttgta--tttttttagtagagatggcgtttcaccgttttagccagggtggtctcaatctcctgacttcctgatctgtccgccttggcctcccaaagtgctgggattacaggggtaagccaccacgcccCTCCAAGTATTAAATTTTTTATTTAAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        60329 333 -    281578 AAAtttttttttttttttttt-ttgagacgaagtcttgctgtgtcgcccaggctggagtgcagtggcccgatgtcggctcactgcaagctccgcctgccaggttcacgccattctcctgactcagcctcctgagtagctgggactacaggcgcccgccacgatgcccggctaattttttctatttttttttagtagagatggggtttcaccgtgttagccagggtggtctcaatctcctgacttcctgatccgtccgccttggcctcccaaagtgctgggattacaagggtaagccaccacgcccCTCCAAGTATTAAATTTTTTATTTAAAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164218779 324 - 169600520 AAtt---ttttttttttt----ttgagacggagtcttgctcagtcacccaggccggagtgcagtggcatgatcttagctcagtgcaagctccgcctcccaggttcacgccattttcctgcctcagcctcccgagtagctgcgactacaggtgcccgccacgatgcctggctaatattttgta--gttctttagtagagatgggg-ttcaccgtgttagctaggatggtatcgatctcctgacttcgtggtctgcccgcctcagcctcccaaagtgctgggattacaggcttaagccaccgcgcccggccAAGTATGAAACTTTTTATTTGAAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165538209 327 - 171882078 AAtttttttttttttttt----ttgagacggagtcttgctcagtcacccaggccggagtgcagtggcatgatcttagctcagtgcaagctccgcctcccaggttcacgccattttcctgcctcagcctcccgagtagctgcgactacaggtgcccgccacgatgcctggctaattttttgta--tttctttagtagagatgggg-ttcaccgtgttagctaggatggtatcgatctcctgacttcgtggtctgcccgcctcagcctcccaaagtgctgggattacaggcttaagccaccatgcccggccAAGTATTAAACTTTTTATTTGAAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       378281 320 +   2379783 -------ttttttttttt----ttgagacggagtcttgctcagtcacccaggccggagtgcagtggcatgatcttagctcagtgcaagctccgcctcccaggttcacgccattttcctgcctcagcctcccaagtagctgcgactacaggtgcctgccacgatgcctggctaattttttgta--tttctttagtagagatgggg-ttcaccgtgttagctaggatggtatcgatctcctgacttcgtggtctgcccgcctcagcctcccaaagtgctgggattacaggcttaagccaccatgcccggccAAGTATTAAACTTTTTATTTGAAAT
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53780212 327 +  58131712 AAtttttttttttttttt----ttgagacggagtcttgctcagtcacccaggccggagtgcagtggcacgatcttagctcagtgcaagctccgcctcccacgttcacgccattctcctgcctcagcctcccgagtagctgcgactacaggtgcccgccacgatgcctggctaattttttgta--tttctttagtagagatgggg-ttcactgtgttagctaggatggtatcgatctcctgacttcgtggtctgcccacctcagcctcccaaagtgctgggattacaggcttaagccaccatgcccggccAAGTATTAAACTTTTTATTTGAAAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       391235 324 -   3636681 AA--tttttttttttttt----ttgagatggagtcttgctcagtcacccaggccggagtgcagtggcacgatcttagctcagtgcaagctccgcctcccaggttcacatcattctcctgcctcagcctccc-aatagctgcgactacaggtgcctgccacgatgcctggctaattttttgta--tttctttagtagagatgggg-ttcaccgtgttagctaggatggtatcgatctcctgacttcgtggtctgcccgcctcagcctcccaaagtgctgggattacaggcttaagccaccatgcccggccAAGTATTAAACTTTTTATTTGAAAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       381602 323 -   4457520 AAA----ttttttttttt----ttgagacggagtcttgctcagtcacgcaggctggagtgcagtggtgcgatcttaggtcagtgcaagctccacctcccaggttcacgccagtctcctgcctcagcctcccgagtagctgcgactacaggtgcccgccacgacgccgggctaattttttata--tttctttagtagagatggtg-ttcaccgtgttagccaggatggtatcgatctcctgactttgtggtctgcccgcctcggcctcccaaagtgctgggattacaggcttaagccaccgcgcccagccAAGTATTAAACTTTTTATTTGAAAT
i colAng1.NW_012115278v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e nomLeu3.chr6               70916568 1738 + 121039945 M
e cerAty1.NW_012001462v1       356045  74 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=2781278.000000
s hg38.chr15_KI270851v1_alt    134209 601 +    263054 ATCTCCCCTCTCCAAAGATCTCCCAGCATTTCTGCAGAGGTCTCTACCTAGGTAAGGAGAAGAAACTATTCTTggccgggtacagtggctcacgcctgtaataccagcactttggaaagccaaggttggaggattccttgatcccagaagttcgagaccagcctggccaacatggtgaaaccccatctttaccaaaaatacaaaaattaggtgg--gtgtggtggagtgtgcctgtagtcccagctactcaggaggctgaggtagaaggatcgcttgggcctgggacgtcaagtctgcagtgaaccaaggtggtgccactgcactccagcctgggtaacagagtgagatcctgtctc----aaaaaaaaaaaaTTATTTGTGAGGGTGAAATTTAAATACCT----TTGTGCATAGCTATCAGTTATTCTTTGTTTTAATATTTAGTTTATTGTGAAATATAACACATATAGAAACATACATAAAACAACACACAGggccaggcccggtgggtcacgccttgtaatcccagcactttgggaggccgaggcggacggattacttgaggt-gaggagtttgagaccagcctggccaacatggtgaaacccca-tc
s panTro5.chr15               9391253 599 +  83230942 ATCTCCCGTCTCCAAAGATCTCCCAGCATTTCTGCAGAGGTCTCTACCTAGGTAAGGAGAAGAAACTATTCTTggctgggtacagtggctcacgcctgtaataccagcactttggaaagccaaggttggtggattccttgatcccagaagttcgagaccagcctggccaacatggtgaaaccccatctttaccaaaaatacaaaaattaggtgg--gtgtggtggagtgtgtctgtagtcccagctactcaggaggctgaggtagaaggatcgcttgggcctgggaggtcaagtctgcagtgaatcaaggtggtgccactgcactccagcctgggtaacagagtgagatcctgtctc-aaaaaaaaaaaaaaaTTATTTGTGAGGGTGAAATTTAAATACCT----TTGTGCATAGCTATCAGTTATTCTTTGTTTTAATA-----TTTATTGTGAAATATAACACATATAGAAACATACATAAAACAACACACAGggccaggcccggtgggtcacgccttataatcccagcactttgggaggccgaggcgggcggattacttgaggt-gaggagtttgagaccagcctggccaacatggtgaaacccca-tc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74012310 595 -  99763055 ATCTCCCCTCTCCAAAGATCTCCCAGCATTTCTGCAGAGGTCTCTACCTAGGTAAGGAGAAGAAACTATTCTTggctgggtacagtggctcacgcctgtaataccagcactttggaaagccaaggttggtggattccttgatcccagaagttcgagaccagcctggccaacatggtgaaaccccatctttaccaaaaatacaaaaattaggtgg--gtgtggtggagtgtgcctgtagtcccagctactcaggaggctgaggtagaaggatcgcttgggcctgggaggtcaagtctgcagtgaatcaaggtggtgccactgcactccagcctgggtaacagagtgagatcctgtctc-----aaaaaaaaaaaTTATTTGTGAGGGTGAAATTTAAATACCT----TTGTGCATAGCTATCAGTTATTCTTTGTTTTAATA-----TTTATTGTGAAATATAACACATATAGAAACATACATAAAACAACACACAGggccaggcccggtgggtcacgccttataatcccagcactttgggaggccgaggcgggcggattacttgaggt-gaggagtttgagaccagcctggccaacatggtgaaacccca-tc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        60662 603 -    281578 ATCTCCCCTCTCCAAAGATCTCCCAGCATTTCTGCAGAGGTCTCTACCTAGGTAAGGAGAAGAAACTATTCTTggccgggtacagtggctcacgcctgtaataccagcactttggaaagccaaggttggtggattccttgatcccagaagttcgagaccagcctggccaacatggtgaaaccccatctttaccaaaaatacaaaaattaggtgg--gtgtggtggagtgtgcctgtagtccgagctactcaggaggctgaggtagaaggatcgcttgggcctgggaggtcaaggctgcagtgaaccaaggtggtgctactgcactccagcctgggtaacagagtgagatcctgtctc--aaaaaaaaaaaaaaTTATTTGTGAGGGTGAAATTTAAATACCT----TTGTGCATAGCTATCATTTATTCTTTGTTTTAATATTTAGTTTATTGTGAAATATAACACATATAGAAACATACATAAAACAACACACAGggccaggcccggtgggtcacgccttataatcccaggactttgggaggccgaggcgggcagattacttgaggt-caggagtttgagaccagcctggccaacatggtgaaacccca-tc
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164219103 605 - 169600520 ATCTTCCCTCTCCAAAGATCTCCCAGCATTTCTGCAGAAGTCTCTACCTAGGTGAGGAGAAGAAACAATTCTTggccaggtgcagtggctcacgcctgtaatatcagcactttggaaagccaaggttggtggattccttgatcccaggagttcgagaccagcctggtcaacaagatgaaaccccatctttaccaaaaatacaaaaatgaggcgggtgtgtggtggagtgcgcctagagtcccagctactcgggagactgaggtagaaggatcgcctgggcctgggaggtcaaggctgcagtgaaccaaggtggtgccactgcacttcagcctaggtaacagagtgtgaccccgtctc--aaaaaaaaaaaaaaTTATTTGTGAGGGTGAAATTTAAATGCCTTTGATTGTGCAGAGCTATCAGTTATTCTTTGTTTTAATATTTAGTTTATTGTGAAATATAACACATATAGAAACGTACATAA---AACACACAGGGTCATATgtggtgggtcaggcc-tataatcccagtactttgggaggccgaggagggcagatcaattgaggt-caggaatttgagaccagcctggccaacatggtgaaacccca-tc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165538536 605 - 171882078 ATCTTCCCTCTCCAAAGATCTCCCAGCATTTCTGCAGAAGTCTCTACCTAGGTAAGGAGAAGAAACAATTCTTggccaggtgcagtggctcacgcctgtaatatcagcactttggaaagccaaggttggtggattccttgatcccaggagttcgagaccagcctggtcaacaagatgaaaccccatctttaccaaaaatacaaaaatgaggcgggtgtgtggtggagtgtgcctagagtcccagctactcgggagactgaggtagaaggatcgcctgggcctgggaggtcaaggctgcagtgaaccaaggtggtgccactgcacttcagcctaggtaacagagtgtgaccccgtctc--aaaaaaaaaaaaaaTTATTTGTGAGGGTGAAATTTAAATGCCTTTGATTGTGCAGAGCTATCAGTTATTCTTTGTTTTAATATTTAGTTTATTGTGAAATATAACACATATAGAAACGTACATAA---AACACACAGGGTCATATgtggtgggtcaggcc-tataatcccagtactttgggaggccgaggagggcagatcaattgaggt-caggaatttgagaccagcctggccaacatggtgaaacccca-tc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       378601 606 +   2379783 ATCTTCCCTCTCCAAAGATCTCCCAGCATTTCTGCAGAAGTCTCTACCTAGTTAAGGAGAAGAAACAATTCTTggccaggtgcagtggctcacacctgtaatatcagcactttggaaagccaaggttggtggattccttgatcccaggagttcgagaccagcctggtcaacaagatgaaaccccatctttaccaaaaatacaaaaatgaggcgggtgtgtggtggagtgtgcctagagtcccagctactcgggagactgaggtagaaggatcgcctgggcctgggaggtcaaggctgcagtgaaccaaggtggtgccactgcacttcagcctaggtaacagagtgtgaccccgtctc---aaaaaaaaaaaaaTTATTTGTGAGGGTGAAATTTAAATGCCTTTGATTGTGCAGAGCTATCAGTTATTCTTTGTTTTAATATTTAGTTTATTGTGAAATATAACACATATAGAAACGTACATAA---AACACACAGGGTCATATgtggtgggtcaggcc-tataatcccagcactttgggaggccgaggagggcagatcaattgaggtccaagaatttgagaccagcctggccaacatggtgaaaccccattc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       356119 605 +   4116138 ATCTTCCCTCTCCAAAGATCTCCCAGCATTTCTGCAGAAGTCTCTACCTAGGTAAGGAGAAGAAACAATTCTTggccaggtgcagtggctcacgcctgtaatatcagcactttggaaagccaaggttggtggattccttgatcccaggagttcgagaccagcctggtcaacaagatgaaaccccatctttaccaaaaatacaaaaatgaggcgggtgtgtggtggagtgtgcctagagtcccagctactcaggagactgaggtagaaggatcgcctgggcctgggaggtcaaggctgcagtgaaccaaggtggtgccactgcacttcagcctaggtaacagagtgtgaccccgtctc--aaaaaaaaaaaaaaTTATTTGTGAGGGTGAAATTTAAATGCCTTTGATTGTGCAGAGCTATCAGTTATTCTTTGTTTTAATATTTAGTTTATTGTGAAATATAACACATATAGAAACGTACATAA---AACACACAGGGTCATATgtggtgggtcaggcc-tataatcccagcactttgggaggccgaggtgggcagatcaattgaggt-caggaatttgagaccagcctggccaacatggtgaaacccca-tc
i cerAty1.NW_012001462v1    I 74 C 0
s chlSab2.chr26              53780539 605 +  58131712 ATCTTTCCTCTCCAAAGATCTCCCAGCATTTCTGCAGAAGTCTTTACCTAGGTAAGGAGAAGAAACAATTCTTggccaggtgcagtggctcatgcctgtaatatcagcactttggaaagccaaggttggtggattccttgatcccaggagttcgagatcagcctggtcaacacgatgaaaccccatctttaccaaaaatacaagaatgaggcag--gtgtggtggagtgtgcctagagtcccagctactcgggaggctgaggtagaaggatcgcctgggcctgcgaggtcaaggctgcagtgaaccaaggtggtgccactgcacttcagcctaggtaacagagtgtgaccctgtctcaaaaaaaaaaaaaaaaTTATTTGTGAGGGTGAAATTTAAATGCCTTTGATTGTGCATAGCTATCAGTTATTCTTTGTTCTAATATTTAGTTTATTGTGAAATACAACACATATAGAAACGTACATAA---AACACACAGggtcagatgtggtgggtcaggcc-tataattccagcactttgggaggctgaggtgggcagatcagttgaggt-caggagtttgagaccagcctggccaacatggtgaaacccca-tc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       391559 603 -   3636681 ATCTTCCCTCTCCAAAGATCTCCCAGCATTTCTGCAGAAGTCTCTACCTAGGTAAGGAGAAGAAACAATTCTTggccaggtgcagtggctcacgcctgtaatatcagcactttggaaagccaaggttggtggattcctcgatcccaggagttcgagaccagcctggtcaacaagatgaaaccccatctttaccaaaaatacaaaaatgaggggggtgtgtggtgcagtgtgcctagagtcccagctactcgggggactgaggtagaaggatcgcctgggcctgggaggtcaaggctgcagtgaaccaaggtggtgccactgcacttcagcctagataacagagtgtgaccccgtctc--aaaaaaaaaaaaaaTTATTTTTGAGGGTGAAATTTAAATGCCTTTGATTGTGCAGAGCTATCAGTTATTCTTTGTTTTAATATTTAGTTTATTGTGAAATATA--ACATATAGAAACATACATAA---AACACACAGGGTCATATgtggtgggtcaggcc-tataatcccagcactttgggaggccgaggcgggcagatcaattgaggt-caggaatttgagaccagcctggccaacatggtgaaacccca-tc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       381925 598 -   4457520 ATCTTCCCTCTCCAAAGATCTCCTAGCATTTCTGCAGAAGTCTCTACCTAGGTAAGGAGAAGAAACAATTCTTggccaggtgcagtggctcacgcttgtaataccagcactttggaaagccaagcttggtggattccttgatccctggagttcaagaccagcctgatcaacatgatgaaaccccatctttaccaaaaatacaaaaatgaggcgg--gtgtggtggagtgtgcctagagtcccagctactcgggaggctgaggtaaaaggatagcctgtgcctgggaggtcaaggctgcagtgaaccaaggtggtgccactgcacttcagcctaggtaacagagtgtgaccctgtctc---aaaaaaaaaaaaaGTATTTGTGAGGGTGAAATTTAAATGCCT----TTGTGCATAGCTACCAGTTATTCTTTGTTTTAATATTTAGTTTATTGCGAAATATAACACATATAGAAACGTACATAA---AACACACAGggtcaggtgtggtgggtcaggcc-tgtaatcccagcactttgggaggccgaggcgggcagatcaattgaggt-caggagtttgagaccagcctggccaacatggtgaaacccca-tc
i colAng1.NW_012115278v1    C 0 M 350
e canFam3.chr3               59903236 11399 -  91889043 I
e nomLeu3.chr6               70916568 1738 + 121039945 M
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=97554.000000
s hg38.chr15_KI270851v1_alt    134810 27 +    263054 tctactaaaaatacaaaaattagtcag
s panTro5.chr15               9391852 27 +  83230942 tctactaaaaatacaaaaattagtcag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74012905 27 -  99763055 tctactaaaaatacaaaaattagtcgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        61265 27 -    281578 tctactaaaaatacaaaaattagtcgg
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164219708 27 - 169600520 tctactaaaaatacaaaaattagtcgg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165539141 27 - 171882078 tctactaaaaatacaaaaattagtcgg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       379207 26 +   2379783 tctact-aaaatacaaaaattagtcag
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       356724 26 +   4116138 tgtacc-aaaatacaaaaattagccag
i cerAty1.NW_012001462v1    C 0 I 24
s chlSab2.chr26              53781144 27 +  58131712 tctactaaaaatacaaaaattagtcgg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       392162 27 -   3636681 tctactaaaaatacaaaaattagtcgg
i manLeu1.NW_012102332v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e nomLeu3.chr6               70916568 1738 + 121039945 M
e colAng1.NW_012115278v1       382523 350 -   4457520 M
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=167840.000000
s hg38.chr15_KI270851v1_alt    134837 58 +    263054 atgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggca-ggagaatcgc
s panTro5.chr15               9391879 58 +  83230942 atgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggca-ggagaatcgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74012932 58 -  99763055 atgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggca-ggagaatcgc
i panPan2.chr15             C 0 I 23
s gorGor5.CYUI01000141v1        61292 58 -    281578 atgtggtggtacatgcctgtaatcccagctacttgggaggctaaggca-ggagaatcgc
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164219735 58 - 169600520 atatcgtggtgcatgccagtaatcccagctactaggaaggctgaggca-ggagaatttc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165539168 58 - 171882078 atatcgtggtgcatgccagtaatcccagctactaggaaggctgaggca-ggagaatttc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       379233 59 +   2379783 atatcgtggtgcatgccagtaatcccagctactaggaaggctgaggcagggagaatttc
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53781171 58 +  58131712 atatggtggtggatgccagtaatcccagctactaggaaggctgaggca-ggagaattgc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       392189 58 -   3636681 atatcgtggtgcatgccagtaatcccagctactaggaaggctgaggca-ggagaatttc
i manLeu1.NW_012102332v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e nomLeu3.chr6               70916568 1738 + 121039945 M
e colAng1.NW_012115278v1       382523 350 -   4457520 M
e cerAty1.NW_012001462v1       356750 24 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=69433.000000
s hg38.chr15_KI270851v1_alt    134895 31 +    263054 ttgagcctgg-gaggcagaagttacagtgaac
s panTro5.chr15               9391937 31 +  83230942 ttgaacctgg-gaggcagaagttacagtgaac
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        61350 31 -    281578 ttgaacctgg-gaggcagaagttacagtgaac
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164219793 32 - 169600520 ctgagcctggagaggcagaggttacagtgaac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165539226 32 - 171882078 ctgagcctggagaggcagaggttacagtgaac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       379292 32 +   2379783 ctgagcctggagaggcaggagttacagtgaac
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53781229 32 +  58131712 ttgaacctggggaggcagagattacagtgaac
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       392247 32 -   3636681 ctgagcctggagaggcagaggttacagtgaac
i manLeu1.NW_012102332v1    C 0 I 12220
e canFam3.chr3               59903236 11399 -  91889043 I
e nomLeu3.chr6               70916568 1738 + 121039945 M
e panPan2.chr15              74012990 23 -  99763055 I
e colAng1.NW_012115278v1       382523 350 -   4457520 M
e cerAty1.NW_012001462v1       356750 24 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=76166.000000
s hg38.chr15_KI270851v1_alt    134926 58 +    263054 caagatcgtgctactgcactccagcctgggc-aacggagtcagactgtgtct-------aa--aaaaa
s panTro5.chr15               9391968 65 +  83230942 caagattgtgctactgcactccagcctgggc-aacggagtcagattgtgtcttaaaaaaaa--aaaaa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        61381 59 -    281578 caagatcgcactactgcactccagcctgggc-aacggagtcagactgtgtct------aaa--aaaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164219825 58 - 169600520 tgagatagtgccactgcactccagcctgggt-gaaggagtcagactctgtct-------ga--aaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165539258 60 - 171882078 tgagatagtgccactgcactccagcctgggt-gaaggagtcagactctgtct-------gaaaaaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       379324 56 +   2379783 tgagatagtgccactgcactctagcctgggtggaaggagtc-ggctctgtct-----------aagaa
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53781261 58 +  58131712 tgaggtagcgccactgcacttcagcctgggt-gaaggagtcagactctgtct-------ga--aaaaa
i chlSab2.chr26             C 0 I 7135
e canFam3.chr3               59903236 11399 -  91889043 I
e nomLeu3.chr6               70916568 1738 + 121039945 M
e panPan2.chr15              74012990 23 -  99763055 I
e colAng1.NW_012115278v1       382523 350 -   4457520 M
e manLeu1.NW_012102332v1       392279 12220 -   3636681 I
e cerAty1.NW_012001462v1       356750 24 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=12725.000000
s hg38.chr15_KI270851v1_alt    134984 11 +    263054 aagaaaaaaat
s panTro5.chr15               9392033 11 +  83230942 aaaaaaaaaaa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        61440 11 -    281578 agaaaaaaaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164219883 11 - 169600520 aaaaaaaaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165539318 11 - 171882078 aaaaaaaaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       379380 11 +   2379783 aaaaaaaaaaa
i macNem1.NW_012011934v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e nomLeu3.chr6               70916568 1738 + 121039945 M
e panPan2.chr15              74012990 23 -  99763055 I
e colAng1.NW_012115278v1       382523 350 -   4457520 M
e manLeu1.NW_012102332v1       392279 12220 -   3636681 I
e cerAty1.NW_012001462v1       356750 24 +   4116138 I
e chlSab2.chr26              53781319 7135 +  58131712 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=24252.000000
s hg38.chr15_KI270851v1_alt    134995 11 +    263054 aaaggctgggt
s panTro5.chr15               9392044 11 +  83230942 aTAggccgggt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        61451 11 -    281578 aTAggccgggt
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164219894 11 - 169600520 aaaggccaggt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165539329 11 - 171882078 aaaggccaggt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       379391 11 +   2379783 aaaggccaggt
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53788454 11 +  58131712 AAAggccaggt
i chlSab2.chr26             I 7135 C 0
s manLeu1.NW_012102332v1       404499 11 -   3636681 AAAggccaggt
i manLeu1.NW_012102332v1    I 12220 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e nomLeu3.chr6               70916568 1738 + 121039945 M
e panPan2.chr15              74012990 23 -  99763055 I
e colAng1.NW_012115278v1       382523 350 -   4457520 M
e cerAty1.NW_012001462v1       356750 24 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=48072.000000
s hg38.chr15_KI270851v1_alt    135006 16 +    263054 gtggtggctcacgcct
s panTro5.chr15               9392055 16 +  83230942 gtggtgggtcacgcct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74013013 16 -  99763055 gtggtggctcacgcct
i panPan2.chr15             I 23 C 0
s gorGor5.CYUI01000141v1        61462 16 -    281578 gtggtggctcacgcct
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164219905 16 - 169600520 gcggtggctcacacct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165539340 16 - 171882078 gcggtggctcacacct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       379402 16 +   2379783 gcggtggctcacacct
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53788465 16 +  58131712 gcggtggctcacacct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       404510 16 -   3636681 gcagtggctcacacct
i manLeu1.NW_012102332v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e nomLeu3.chr6               70916568 1738 + 121039945 M
e colAng1.NW_012115278v1       382523 350 -   4457520 M
e cerAty1.NW_012001462v1       356750 24 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=240243.000000
s hg38.chr15_KI270851v1_alt    135022 61 +    263054 gtaatcccagcactttggga-ggccgaggcgggcagatcccttgaggtcaggagttcgagac
s panTro5.chr15               9392071 61 +  83230942 gtaatcccagcactctggga-ggccgaggcgggcagatcacttgaggtcaggagttcgagac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74013029 61 -  99763055 gtaatcccagcactttggga-ggccaaggcgggcagatcacttgaggtcaggagttcgagac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        61478 61 -    281578 gtaatcccagcactttggga-ggccgaggcgggcagatcacttgaggtcaggagttcgagac
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164219921 61 - 169600520 gtaatcccagcactttggga-ggctgaggcgggtagatcacttgaggtcaggagttcgagac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165539356 61 - 171882078 gtaatcccagcactttggga-ggctgaggcgggtagatcacttgaggtcaggagttcgagac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       379418 61 +   2379783 gtaat-ccagcactttgggagggctgaggcgggtagatcacttgaggtcaggagttcgagac
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53788481 61 +  58131712 gtaatcccagcactttggga-ggctgaggcgggtagatcacctgagatcaggagttcgagac
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       404526 61 -   3636681 gtaatcccagcactttggga-ggctgaggcgggtagatcacctgaggtcaggagttcgagac
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       382873 61 -   4457520 gtaatcccagcactttggga-ggctgaggcgggtggatcacctgaggtcaggagttcgagac
i colAng1.NW_012115278v1    M 350 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e nomLeu3.chr6               70916568 1738 + 121039945 M
e cerAty1.NW_012001462v1       356750 24 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=2446645.000000
s hg38.chr15_KI270851v1_alt    135083 574 +    263054 cagcctgaccaacatggagaaaccccatccctactaaaa--------gtacaaaattagccgggcatggtgttgcatgactgaaatcccagctactttg------gaggctgaggcaggagaatcgcttgaatctgggaggtagaggttgttttgagct-gagatcacgccattgtactccagcctgggcaacaagagcgaaactccgtct---------------------------------------caaacaaacaaaaaacaaaacaaaaacaaaaAACACAGTGTAACATGTTATTATAAAGTCACTGCTCAGGGACCAACTTGGCCGCTCCTGTGCCTCTAGAGGGAAGCTCCTTCCCACTGTTCTTTAGAGTTTTATATGTTAAGTACAGGAGTCAACAAACTAGGCCTATGCACCACATCTGGCACCCAGCC----tttatttattttttgagatggcgtctcactctgtcaccctggctgcagtgtggtagcacaatctcggctcactgcatcctccacctcccagattcaagcaattctcc-tgcctcagcctcctgagtagctgggattacaggtgtgtgccaccacacccggctaatttttatatttttggtagagacgg
s panTro5.chr15               9392132 574 +  83230942 cagcctgaccaacatggagaaaccccatccctactaaaa--------gtacaaaattagccgggcatggtgttgcatgactgaaatcccagctactttg------gaggccgaggcaggagaatcgcttgaatctgggaagtagaggttgttttgagct-gagatcacgccattgtactccagcctgggcaacaagagcgaaactctgtct---------------------------------------caaacaaacaaaaaacaaaacaaaaacaaaaAACACAGTGTAACATGTTATTATAAAGTCACTGCTCAGGGACCAACTTGGCCGCTCCTGTGCCTCTAGAGGGAAGCTCCTTCCCACTGTTCTTTAGAGTTTTATATGTTAAGTACAGGAGTCAACAAACTAGGCCTATGCACCACATCTGGCACCCAGCC----tttatttattttttgagatggcgtcttactctgtcaccctggctgcagtgtggtagcacaatctcggctcactgcaacctccacctcccagattcaagcaattctcc-tgcctcagcctcctgagtagctgggattacaggtgtgtgccaccacacctggctaatttttatatttttggtagagacgg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74013090 574 -  99763055 cagcctgaccaacatggagaaaccccatccctactaaaa--------gtacaaaattagctgggcgtggtgttgcatgactgaaatcccagctactttg------gaggctgaggcaggagaatcgcttgaatctgggaggtagaggttgttgtgagct-gagatcacgccattgtactccagcctgggcaacaagagcgaaactccgtct---------------------------------------caaacaaacaaaaaacaaaacaaaaacaaaaAACACAGTGTAACATGTTATTATAAAGTCACTGCTCAGGGACCAACTTGGCCGCTCCTGTGCCTCTAGAGGGAAGCTCCTTCCCACTGTTCTTTAGAGTTTTATATGTTAAGTACAGGAGTCAACAAACTAGGCCTATGCACCACATCTGGCACCCAGCC----tttctttattttttgagatggcgtctcactctgtcaccctggctgcagtgtggtagcacaatctcggctcactgcaacctccacctcccagattcaagcaattctcc-tgcctcagcctcctgagtagctgggattacaggcgtgtgccaccacacctggctaatttttatatttttggtagagacgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        61539 572 -    281578 cagcctgaccaacatggagaaaccccatccctactaaaa--------gtacaaaattagccgggcgtggtgttgcatgactgaaatcccagctactttg------gaggctgaggcaggagaatcgcttgaatctgggaggtagaggttgttgtgagct-gagatcacgccattgtactccagcctgggcaacaagagcgaaactccgtct---------------------------------------caaacaaacaaaaaacaaaacaaaaacaaaaA--ACAGTGTAACATGTTATTATAAAGTCACTGCTCAGGGACCAACTTGCCCGCTCCTGTGCCTCTAGAGGGAAGCTCCTTCCCACTGTTCTTTAGAGTTTTATATGTTAAGTACAGGAGTCAACAAACTAGGCCTATGCACCACATCTGGCACCCAGCC----tttatttattttttgagatggcgtctcactctgtcaccctggctgcagtgtggtagcacgatctcggctcactgcaacctccacctcccagattcaagcaattctcc-tgcctcagcctcctgagtagctgggattacaggtgtgtgccaccacacccggctaatttttatatttttggtagagacgg
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164219982 595 - 169600520 cagcccgaccaacatggagaaacaccgtccctactaaaa--------gtgcaaaattagctgggtgtggtgttgcatgactgaaatcccagctacttgg------gaggctgaggcaggagaatggcttgaatctggaaggctgatgttgttgtgagct-gagatcacgtcatcgcactccagcctgggcaacaagagcaaaactccgcctcaaacaaagaaacaaagaaaaaacaaaacaaaaaaa---caaagaaacaaagaaaaaacaaaacaaaaaaaCCACAGTGTAACATGTTATTATAAAGACAGTGCTCAGGGACCAATTTTGCTGGTCCTGCGCCT-------------------CACTGTTTTTTAGAGTTTTACATCTTAAGTACAGGAGTCAACAAACTAGGCCTCTGCACCACATCTGGCAGCCAGGCtttatttatttattttttgagatggtatctcagtctgccacccaggctgcagtgcggtagcacgatcttggctcactgcaacctccgcctcctggattcaagcaattctcc-tgtctcagcctcctgagtagctgggattacaggtgcgtgccaccaagcctggctaatttttgtatttttggtagagatgg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165539417 595 - 171882078 cagcccgaccaacatggagaaacaccgtccctactaaaa--------gtgcaaaattagctgggtgtggtgttgcatgactgaaatcccagctacttgg------gaggctgaggcaggagaatggcttgaatctggaaggctgatgttgttgtgagct-gagatcacgtcatcgcactccagcctgggcaacaagagcaaaactccgcctcaaacaaagaaacaaagaaaaaacaaaacaaaaaaa---caaagaaacaaagaaaaaacaaaacaaaaaaaCCACAGTGTAACATGTTATTATAAAGACAGTGCTCAGGGACCAATTTTGCTGGTCCTGCGCCT-------------------CACTGTTTTTTAGAGTTTTACATCTTAAGTACAGGAGTCAACAAACTAGGCCTCTGCACCACATCTGGCAGCCAGGCtttatttatttattttttgagatggtatctcagtctgccacccaggctgcagtgcggtagcacgatcttggctcactgcaacctccgcctcctggattcaagcaattctcc-tgtctcagcctcctgagtagctgggattacaggtgcgtgccaccaagcctggctaatttttgtatttttggtagagatgg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       379479 577 +   2379783 cagcccaaccaacat-gagaaacacccgtcctact--aa--------gtgcaaaattagctgggtgt-gtgttgcatgactgaaatcccagctacttgg------gaggctgaggcaggagaatggcttgaatctggaaggctgatgttgttgtgagctggagatcacgtcatcgcactccagcctgggcaacaagagcaaaactccgcct----caaagaaacaa--gaaaaacaaaacaaaaaaa---CAAAGAA------CAAAAAC-AAACAAAAAAAACACAGTGTAACATGTTATTATAAAGACAGTGCTCAGGGACCAATTTTGCTGCT-CTGCGCCT-------------------CACTGTTTTTTAGAGTTTTACATCTTAAGTACAGGAGTCAACAAACTTGGCCTCTGCACCACATCTGGCAGCCAGGCtttatttatttattttttgagatggtatctcagtctg-caccca-gctgcagtgcggtagcatgatcttggctcactgcaacctccgcctcctggattcaagcaattctccttgtctcagctcctggagtagctgggattacaggtgcgtgccaccaagcctggctaatttttgtattttttgtagagatgg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       356774 594 +   4116138 cagcccgaccaacatggagaaacactgtccctactaaaa--------gtgcaaaattagctgggtgtggtgttgcatgactgaaatcccagctacttgg------gaggctgaggcaggagaatggcttgaatctgggaggctgatgttgttgtgagct-gagatcacgtcatcgcactccagcctggggaacaagagcaaaactctgcct----caaagaaacaaagaaaaaacaaaacaaaacaaacccaaagaaacaaagaaaaaacaaaacaaaaaaaCTACAGTGTAACATGTTATTATAAAGACAGTGCTCAGGGACCAATTTTGCTGCTCCTGCGCCT-------------------CACTGTTTTTTAGAGTTTTACATCTTAAGTACAGGAGTCAACAAACTAGGCCTCTGCACCACATCTGGCAGCCAGGCtttatttatttattttttgagatggtatctcagtctgccacccaggctgcagtgcggtagcatgatcttggctcactgcaacctccgcctcctggattcaagcaattctcc-tgtctcagcctcctgagtagctgggattacaggtgcgtgccaccaagcctggctaatttttgtatttttggtagagatgg
i cerAty1.NW_012001462v1    I 24 C 0
s chlSab2.chr26              53788542 587 +  58131712 cagcttgaccaacatggagaaacgccgtccctactaaaa--------gtgcaaaattagctgggtatggtgttgcatgacagaaatcccagctacttgggaggcagaggcagaggcaggagaatggcttgaatctgggaggctgatgttgttgtgagct-gagatcacatcaccgcactccagcctgggcaacaagagtaaaactccgcctc--------------------------------aaa---caaagaaacaaagaaaaaacaaaaCAAAAAAACCACAGTGTAACATGTTATTATAAAGACAGTGCTCAGGGACCAA-TTTGCTGCTCCTGCGCCTCTAGAGGGAAGCTCCTGCCCACTGTTTTTTCGAGTTTTACATCTTAAGTACAGGAGTCAACAAACTAGGCCTCTGCACCACATCTGGCAGCCAGGCtttatttatttattttttgagatggcatctcagtctgccacccagtctgcagtgcggtagcacgatctcagctcactgcaacctccgcctcctggattcaagcaattctcc-tgtctcagcctcctgagtagctgggattacaggtgtgtgccaccaagcctggctaatttttgtatttttggtagagatgg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       404587 595 -   3636681 cagcccgaccaacatggagaaacactgtccctattaaaa--------gtgcaaaattagctgggtgtggtgttgcatgactgaaatcccagctacttgg------gaggctgaggcaggagaatggcttgaatctgggaggctgatgttgttgtgaact-gagatcacgtcatcgcactccagcctgggcaacaagagcaaaactccgcctcaaacaaagaaacaaagaaaaaacaaaacaaaaaaa---caaagaaacaaagaaaaaacaaaacaaaaaaaCCACAGTGTAACATGTTATTATAAAGACAGTGCTCAGGGACCAATTTTGCTGCTCCTGCGCCT-------------------CACTGTTTTTTAGAGTTTTACATCTTAAGTACAGGAGTCAACAAACTAGGCCTCTGCACCACATCTGGTAGCCAGGCtttatttatttattttttgagatggtatctcagtctgccacccaggctgcagtgcggtagcatgatcttggctcactgcaacctccgcctcctggattcaagcaattctcc-tgtctcagcctcctgagtagctgggattacaggtgcgtgccaccaagcctggctaatttttgtatttttggtagagatgg
i manLeu1.NW_012102332v1    C 0 T 49132
s colAng1.NW_012115278v1       382934 589 -   4457520 cagcctgaccaacatggagaaacgccatccctactaaaacgccgtccgtacaaaattagctgggtgtggtgttgcatgactgaaatcccagctacttgg------gaggctggggcaggagaatggcttgaatctgggaggctgatgttgttgtgcgct-gagatcacgtcattgcactccagcctgggcaaggagagcaaaactccgcctc--------------------------------aga---caaagaaacaaagaaaaaacaaaacaaAAAAACCACAGTGTAACAAGTTATTATAAAGACAGTGCTCAGGGACCAA-TTTGCTGCTCCTGCGCCTCTAGAGGGAAGCTCCTGCCCACTGTTTTTTAGAGTTTTACATCTTAAGTACAGGAGTCAACAAACTAGGCCTGTGCACCACATCTGGCACCCAGGCtttatttatttattttttgagatggcgtttcagtctgccacccaggctgcagtgcggtagcacgatctcggctcactgcaacctccgcctcctggattcaagcaattctcc-cgtctcagcctcctgaatagctgggattacaggtgcgtgccatgaagcctggctaatttttgtatttttggtagagatgg
i colAng1.NW_012115278v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e nomLeu3.chr6               70916568 1738 + 121039945 M
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=257661.000000
s hg38.chr15_KI270851v1_alt    135657 56 +    263054 ggtttcaccatgttggtcagtctggtctcgaactcctgacgtcaggtgatctgcct
s panTro5.chr15               9392706 56 +  83230942 ggtttcaccatgttggtcagtctggtctcgaactcctgacgtcaggtgatccgcct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74013664 56 -  99763055 ggtttcaccatgttggtcagtctggtctcgaactcctgacgtcaggtgatccgcct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        62111 56 -    281578 ggtttcaccatgttggtcagtctggtctcgaactcctgacgtcaggtgatccgcct
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164220577 56 - 169600520 ggtttcaccacattggtcagtctggtctcgaactcctgacctcaggtgatccgtcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165540012 56 - 171882078 ggtttcaccacattggtcagtctggtctcgaactcctgacctcaggtgatccgtcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       380056 55 +   2379783 ggtttca-cacattggtcagtctggtctcgaactcctgacctcaggtgatccgtcc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       357368 56 +   4116138 ggtttcaccacattggtcagtctggtctcgaactcctgacctcagatgatccgtcc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53789129 56 +  58131712 ggtttcaccacgttggtcagtctggtctcgaactcctaacctcaggtgatccgccc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       356050 56 -   3636681 tgtttcaccatgttagccagcctggtctcgaacgcctgacctcaggtgatccgccc
i manLeu1.NW_012102332v1    T 49132 I 49076
s colAng1.NW_012115278v1       383523 56 -   4457520 ggtttcaccacattggtcagtctggtctcgaactcctgacctcaggtgatccgccc
i colAng1.NW_012115278v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e nomLeu3.chr6               70916568 1738 + 121039945 M
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=1442657.000000
s hg38.chr15_KI270851v1_alt    135713 318 +    263054 gc-gttgccctctcaaagtgctgggattacaggcatgaggcatgatgcctgaccCAGCCTTTTTTAAAATGAAGGTTTCGGCTggcgcggtggctcatgtctgtagtcccagcattttgggaggccaaggcaggtggatcacctgaggtcagtagttggagaccaccctggccaacatggtgaaaccccgtctgtatcaaaatacaaaaattagctgggcgtgatggcaggcacatgtaatgccagctactc-gggagcctgaggcacgacaatcacttgaacccgggaggcggaggttgcagtgagccaagatcacacg
s panTro5.chr15               9392762 318 +  83230942 gc-gttgccctctcaaagtgctgggattacaggcatgaggcatgatgcctgaccCAGCCTTTTTTAAAACGAAGGTTTCGGCTggcgcggtggctcatgtctgtagtcccagcgttttgggaggccaaggcaggtggatcacctgaggtcagtagttggagaccaccctggccaacatggtgaaaccctgtctgtaccaaaatacaaaaattagctgggcgtgatggcaggcacatgtaatgccagctactc-gggagcctgaggcacgacaatcacttgaacccgggaggcggaggttgcagtgagccaagatcacacg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74013720 318 -  99763055 gc-gttgccctctcaaagtgctgggattacaggcatgaggcatgatgcctgaccCAGCCTTTTTTAAAATGAAGGTTTCGGCTggcgcggtggctcatgtctgtagtcccagcattttgggaggccaaggcaggtggatcacctgaggtcagtagttggagaccaccctggccaacatggtgaaaccccgtctgtaccaaaatacaaaaattagctgggcgtgatggcaggcacatgtaatgccagctactc-gggagcctgaggcacgacaatcacttgaacccgggaggcggaggttgcagtgagccaagatcacacg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        62167 318 -    281578 gc-gatgccctctcaaagtgctgggattacaggcatgaggcatgatgcctgaccCAGCCTTTTTTAAAATGAAGGTTTCGGCTggcgcggtggctcatgtctgtagtcccagcactttgggaggccaaggcaggtggatcacctgaggtcagtagttggagaccaccctggccaacatggtgaaaccccatctgtaccaaaatacaaaaattagctgggtgtgatggcaggcacatgtaatgccagctactc-gggagcctgaggcacgacaatcacttgaacccgggaggcggaggttgcagtgagccaagatcacacg
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164220633 318 - 169600520 gt-gtaggtctgtcaaagtgctgggattacaggcatgagccaTGATGCGTGACCCAGCCTTTTTTAAAATGAGGGTTTCAGCTggtgcggtggctcacatctgtaatcccagcactttgggaggccaaggctggtggatcacctgaggtcaggagttcgagaccagcctggccaacgtggtgaaaccccatctgtaccaaaatacaaaaattagccaggcgtgatggcaggcacatgtagtgccagctactt-gggaggctgaggcaggagaatcacttaaaccggggaggcggaggttgcagtgagccaagattgcaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165540068 318 - 171882078 gt-gtaggtctgtcaaagtgctgggattacaggcatgagccaTGATGCGTGACCCAGCCTTTTTTAAAATGAGGGTTTCAGCTggtgcggtggctcacatctgtaatcccagcactttgggaggccaaggctggtggatcacctgaggtcaggagttcgagaccagcctggccaacgtggtgaaaccccatctgtaccaaaatacaaaaattagccaggcgtgatggcaggcacatgtagtgccagctactt-gggaggctgaggcaggagaatcacttaaaccggggaggcggaggttgcagtgagccaagattgcaca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       380111 309 +   2379783 gtggtaggtctgtcaaagtgctggga-tacaggcatgagccaTGATGCGTGACCCAGCCTTTTTTAAAATGA-GGTTTCAGCTggtgcggtggctca-atctgtaatcccagcactttgg--agccaaggctggtggatcacctgaggtcaggag-tcgagaccagcctggccaa-gtggtgaaa-cccatctgtaccaaaatacaaaaattagcca-gcgtgatggcaggcacatgtagtgccagctacttggggaggctgaggcaggagaatcacttgaaccggg--agcggaggttgcagtgagccaagattgcaca
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       357424 318 +   4116138 gt-gtaggcctgtcaaagtgctgggattacaggcatgagccatgatgcctgaccCAGCCTTTCTTAAAATGAGGGTTTCAGCTggtgcggtggctcacgtctgtaatcccagcactttgggaggccgaggctggtggatcacctgaggtcaggagttcgagaccagcctggctaacgtggtgaaaccccatctgtaccaaaatacaaaaattagccaggcgtgatggcaggcacatgtagtgccagctactt-gggaggctgaggcaggacaatcacttgaaccggggaggcggagattgcagtgagccaagattgcaca
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53789185 318 +  58131712 gc-ataggcctgtcaaagtgctgggattacaggcaagagccatgatgcctgaccCAGCCTTTTTTAAAATGAAGGTTTCAGCTggtgcggtggctcacgtctgtaatcccagcactttgggaggccaaggctggtggatcacctgaggtcaggagttcgagaccagcctggccaacgtggtgaaaccccatctgtaccaaaatacaaaaattagccgggtgtgatggcaggcacatgtagtgccagctactt-gggaggctgaggcaggagaatcacttgaatcggggaggcggaggttgcagtgagccaagattgcatg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       405182 318 -   3636681 gc-gttggcctctcaaagtgctgggattacaggcatgagccatgatgcctgaccCAGCCTTTTTTAAAATGAGGGTTTCAGCTggtgcggtggctcacgtctgtaatcccagcactttgggaggccaaggctggtggatcacctgaggtcaggagttcgagactagcctggccaacgtggtgaaaccccatctgtaccaaaatacaaaaattagccaggcgtgatggcaggcacatgtagtgccagctactt-gggaggctgaggcaggagaatcacttgaaccggggaggcggaggttgcagtgagccaagattgcaca
i manLeu1.NW_012102332v1    I 49076 C 0
s colAng1.NW_012115278v1       383579 318 -   4457520 ac-gtaggcctgtcaaagtgctgggattacaggcatgagccatgatgcctgaccCAGCCTTTTTTAAAATGAGGGTTTCAGCTggtgcggtggctcacgtctgtagtcccagcactttgggaggccaaggctggtggatcacctgaggtcaggagtttgagaccagcctggccaacgtggtgaaaccccatctgtaccaaaatacaaaaattagccgggcctgatggcaggcacatgtagtgccagctactt-gggaggctgaggcaggagaatcacttgaaccggggaggcggagattgcagtgagccaagattgcatg
i colAng1.NW_012115278v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e nomLeu3.chr6               70916568 1738 + 121039945 M
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=2005238.000000
s hg38.chr15_KI270851v1_alt    136031 399 +    263054 attgcactcccgcctgggcaac--gagcgaaactccattt-----caaaatacaataat---aaaaaaaaGGatgtccttttttgtctctcaaccccgtttttta-ttttttttt--attttcagacagggtctcgctctgttgcccagggtggagtgcaggggcccga--tcttagctcactgcggcctcaacttccccagctcacatgatcctcccacctcagcctcccaaatagctgggaccacaggtgggtaccaccatgcccgcctaatttttgtattttttgtagagatgggattatgccatgttgctcaggctgatctcgaacttctgggctcaagtgtctctctgcctccacctcccaaagtgctgggattgcaggcctgagctaccatgcccagccctgctttaa
s panTro5.chr15               9393080 398 +  83230942 attgcactccagcctgggcaac--gagcaaaactccatct-----caaaatataataat---aaaaaaaaGGatgtccttttttgtctctcaaccccgtttttta--attttttt--attttcagacagggtctcgctctgttgcccagggtggagtgcagggacccga--tcttagctcactgcggcctcaacttccccagctcacatgatcctcccacctcagcctcccaaatagctgggaccacaggtgggtaccaccatgcccgcctaatttttgtattttttgtagagatgggattatgccatgttgctcaggctgatctccaacttctgggctcaagtatctctctgcctccacctcccaaagtgctgggattacaggcctgagctaccatgcccagccctgctttaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74014038 397 -  99763055 attgcactccagcctgggcaac--gagcaaaactccatct-----caaaaTATAataat----taaaaaaggatgtccttttttgtctctcaaccccgtttttaa--tttttttt--attttcagacagggtctcgctctgttgcccagggtggagtgcaggggcccga--tcttagctcactgcggcctcaacttccccagctcacatgatcctcccacctcagcctcccaaatagctgggaccacaggtgggtaccaccatgcccgcctaatttttgtattttttgtagagatgggattatgccatgttgctcaggctgatctcgaacttctgggctcaagtatctctctgcctccacctcccaaagtgctgggattacaggcctgagctaccatgcccagccctgctttaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        62485 400 -    281578 attgcactccagcctgggcaac--gagcgaaactccatct-----caaaatataataat--aataaaaaaGGatgtccttttttatctctcaaccccgtttttta-ttttttttt--attttcagacagggtcttgctctgttgcccagggtggagtgcaggggcccga--tcttagctcactgcggcctcaacttccccagctcacatgatcctcccacctcagcctcccaaatagctgggaccacaggtgggtaccaccatgcccgcctaatttttgtattttttgtagagatgggattatgccatgttgctcaggctgatctcgaacttctgggctcaagtatctctctgcctccacctcccaaagtgctgggattacaggcctgagctaccatgcccagccctgctttaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70918348 403 + 121039945 attgcactccagcctgggcaacaagggcgagactccatct-----caaaaaaaaataataaaataaaaaaGGatgtccttttttgtctctcaaccccgtttttta--tttttttt--attttcagacagggtctcgctctgttgctgagggtggagtgcaggggcccga--acttagctcactgcagcctcaacttctctggctcacgtgaccctcccacctcagcctcccaaatagctgggaccacaggtgggtacccccatgcccgcctaatttttgtgttttttgtagagatgggattatgccatgttgctcaggctgatctcgaacttatgggctcaagtatctctctgcctccacctcccaaagtgctgggattacaggcgtgagctaccatgcccagccctgctttaa
i nomLeu3.chr6              M 1738 C 0
s rheMac8.chr7              164220951 396 - 169600520 attgcactccagccttggcaacgatagcgaaactccatct-----aaaaaaaaaaaaaa--aaaaaaaaaaGatgtccttttttgtctctcaatctcattttttt-tttttttttaaattttcagacagggtctcactctgatgcccagggtagagtgcaggggcccaatctcttagctcactgcagcctcaacctc-ccagttcacatgatcctcccacctcagcctcccaaatagctgggaacacagatgggcaccaccatgcctgcctaatttttgtattttttgtagagatgggattatgccatcttgctcaggctgatctcaaacttctgg---------cctctctgcctccacctccaaaagtgctgggattacaggcgtgagctaccatgcccagccctgctttaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165540386 395 - 171882078 attgcactccagccttggcaacgatagcgaaactccatct-----aaaaaaaaaaaaaa--aaaaaaaaaagatgtccttttttgtctctcaatctcatttttta--ttttttttaaattttcagacagggtgtcactctgatgcccagggtagagtgcaggggcccaatctcttagctcactgcagcctcaacctc-ccagttcacatgatcctcccacctcagcctcccaaatagctgggaacacagatgggcaccagcatgcctgcctaatttttgtattttttgtagagatgggattatgccatcttgctcaggctgatctcaaacttctgg---------cctctctgcctccacctccaaaagtgctgggattacaggcgtgagctaccatgcccagccctgctttaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       380420 387 +   2379783 attgcactccagcctgggcaacgatagcgaaactccatct-----aaaaaaaaaaaaaa--aaaaaGA----TTGTCCTTTTTTGTCTCTCAATCTCAtttttta---ttttttaaaattttcagacagggtctcactctgatgccca-ggtagagtgcaggggcccaatctcttagctcactgcagcctcaacctc-ccagttcacatgatcctcccacctcagcctcccaaatagctgggaacacagatgggcaccaccatgcctgcctaatttttgtattttttgtagagatgggattatgccatcttgctcaggctgatctcaaacttctgg---------cctctctgcctccacct-caacagtgctgggattacaggcgtgagctaccatg-ccAGCCCTGCTTTAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       357742 386 +   4116138 agtgcactccagcctgggcaacgatagggaaactccatct-----aaaaaaaaaaaaaa--aaG--------atgtccttttttgtctc-caatctcatttttta--tttttttttaattttcagacagggtctcactctgatgcccagggtagagtgcaggggcccaatctcttagctcactgcagcctcaacctc-ccagttcacatgatcctcccacctcagcctcccaaatagctgggaacacagatgggtaccaccatgcccgcctaatttttgtattttttgtagagatgggattatgccatgttgctcaggctgatctcaaacttctgg---------cctctctgcctccacctccaaaagtgctgggattacaggcgtgagctaccatgcccagccctgctttaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53789503 400 +  58131712 attgcactccagccagggcaacagtagtgaaattccagctcaaaaaaaaaaaaaaaaaa--aaaaaaaaaaaatgtccttttttgtctctcaaccccatttttaa--tttttaaaaaattttcagacagggtctcgctctgttgcccagggtagagtgcaggggcccaatctcttagctcactgcagcctcaacctc-ccagttcacatgatcttcccaccgcagcctcccaaatagccgggaacacaggtgggtaccaccatgcccgcctaatttttgtattttttgtagagatgggattatgccatgttgctcaggctgatctcgaacttctgg---------cctctctgcctccacctcccaaaatgctgggattataggtgtgagctaccatgcccagccctgctttaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       405500 385 -   3636681 attgcactccagcctgggcgacgatagcgaaactccatct---------------aaaa--aaaaaaaaaaGatgtccttttttgtctctcaatctcatttttta--ttttttttaaattttcagacagggtctcactctgatgcccagggtagagtgcaggggcccaatctcttagctcactgcagcctcaacctc-ccagttcacatgatcctcccacctcagcctcccaaatagctgggaacacagatgggtaccaccatgcccgcctaatttttgtattttttgtagagatgggattatgccatgttgctcaggctgatctgaaacttctgg---------cctctctgcctccacctccaaaagtgctgggattacaggcgtgagctaccatgcccagccctgcttcaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       383897 389 -   4457520 attgcactccagcctgggcaacgatagtgaaactccatct-----caaaaaaaaaaaaa--aaa--------aagtccttttttgtctctcaaccccatttttaatttttttttttaattttcagacagggtctcactctgttgcccagggtagagtgcaggggcccaatctctcagctcactgcagcctcaacctc-ccagttcacatgatcctcccacctcagcctcccaaatagctgggaacacaggtgggtaccaccatgcccacctaatttttgtattttttgtagagatgggattatgccatgttgctcaggctgatcttgaacttctgg---------tctctctgcctccacctcccaaagtgctgggattacaggcgtgagctaccatgcccagccctactttaa
i colAng1.NW_012115278v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=364097.000000
s hg38.chr15_KI270851v1_alt    136430 61 +    263054 tttaaagtgtattacatttgatattagtacagccccttcagctcttttttggttactattt
s panTro5.chr15               9393478 61 +  83230942 tttaaagtgtattacatttgatattagtacagccccttcagctcttttttggttactattt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74014435 61 -  99763055 tttaaagtgtattacatctgatattagtacagccccttcagctcttttttggttactattt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        62885 61 -    281578 tttaaagtgtattacatttgatattagtacagccccttcagctcttttttggttactattt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70918751 61 + 121039945 tttaaagtgtattacatttgatattagtacagccccttcagctcttttttggttactattt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164221347 56 - 169600520 tttaaagtgtattac-----atattagtacagccacttcagctcttttttggttactattt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165540781 56 - 171882078 tttaaagtgtattac-----atattagtacagccacttcagctcttttttggttactattt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       380807 54 +   2379783 -TTAAAGTGTATTAC-----ATATTAGTACAGCCACTTCAGCTCTTTTTT-GTTACTATTT
i macNem1.NW_012011934v1    C 0 I 20
s cerAty1.NW_012001462v1       358128 56 +   4116138 tttaaagtgtattac-----atattagtacagccacttcagctcttttttggttactattt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53789903 56 +  58131712 tttaaagtgtattac-----atattagtacagccacttcagctcttttttggttactattt
i chlSab2.chr26             C 0 I 26
s manLeu1.NW_012102332v1       405885 56 -   3636681 tttaaagtgtattac-----atattagtacagccacttcagctcttttttggttactgttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       384286 56 -   4457520 tttaaagtgtattac-----atattagtacagccacttcagctcttttttggttactattt
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       278819 59 -   2086007 tttaaagtgtatcacatttgatattagtacagccacttcag--cttttttggttactgttt
i cebCap1.NW_016107707v1    N 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=85715.000000
s hg38.chr15_KI270851v1_alt    136491 28 +    263054 taa--ttgtatc--tttgtatccctttacttt
s panTro5.chr15               9393539 28 +  83230942 taa--ttgtatc--tttgtatccttttacttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74014496 28 -  99763055 taa--ttgtatc--tttgtatccttttacttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        62946 28 -    281578 taa--ttgtatc--tttgtatccttttacttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70918812 28 + 121039945 taa--ttgtatc--tttgtattcttttacttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164221403 29 - 169600520 taatgttgtacg--tttGTATCCttttcctt-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165540837 30 - 171882078 taatgttgtacg--tttGTATCCttttccttt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       358184 30 +   4116138 taatgttgtatg--tttGTATCCttttccttt
i cerAty1.NW_012001462v1    C 0 I 690
s manLeu1.NW_012102332v1       405941 30 -   3636681 taatgttgtatg--tttGTATCCttttccttt
i manLeu1.NW_012102332v1    C 0 I 27
s colAng1.NW_012115278v1       384342 20 -   4457520 taatgttgtatg--tttGTATC----------
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       278878 32 -   2086007 gaacgttgtatctttttggatccttttacttt
i cebCap1.NW_016107707v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e macNem1.NW_012011934v1       380861 20 +   2379783 I
e chlSab2.chr26              53789959 26 +  58131712 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=83209.000000
s hg38.chr15_KI270851v1_alt    136519  88 +    263054 caatctgtttctgt-------atttaaaatgtttatcttgtagatagcacattgg-------tggatcatattttgttcttcaatcctttcagccagtctGC
s panTro5.chr15               9393567  88 +  83230942 caatctgtttctgt-------atttaaaatgtttatcttgtagacagcacattgg-------tggatcatattttgttctttaatcctttcagccagtctGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74014524  88 -  99763055 caatctgtttctgt-------atttaaaatgtttatcttgtagatagcacattgg-------tggatcatattttgttcttcaatcctttcagacagtGTGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        62974  88 -    281578 caatctgtttctgt-------atttaaaatgtttatcttgtaggtagcacattgg-------tggatcatattttgttctttaatcctttcagccagtctGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70918840  88 + 121039945 caatctgtttctgt-------atttaaaatgtttatcttgtagatagcacattgg-------tggatcatattttgttttttaatcctttcagccagtctGC
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012115278v1       384362   1 -   4457520 -----------------------------------------------------------------------------------------------------C
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       278910 102 -   2086007 caatctgttttgtttcttctaatttaaaatgtttctcttgtacctagttcattggtggagcatggatcatgttttcttttttaatcctttcagtcagtctGC
i cebCap1.NW_016107707v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e manLeu1.NW_012102332v1       405971  27 -   3636681 I
e cerAty1.NW_012001462v1       358214 690 +   4116138 I
e macNem1.NW_012011934v1       380861  20 +   2379783 I
e rheMac8.chr7              164221432   0 - 169600520 C
e chlSab2.chr26              53789959  26 +  58131712 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T
e macFas5.chr7              165540867   0 - 171882078 C

a score=1911.000000
s hg38.chr15_KI270851v1_alt    136607 1 +    263054 t
s panTro5.chr15               9393655 1 +  83230942 t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74014612 1 -  99763055 t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        63062 1 -    281578 t
i gorGor5.CYUI01000141v1    C 0 I 4
s nomLeu3.chr6               70918928 1 + 121039945 t
i nomLeu3.chr6              C 0 I 8
s macNem1.NW_012011934v1       380881 1 +   2379783 t
i macNem1.NW_012011934v1    I 20 C 0
s colAng1.NW_012115278v1       384363 1 -   4457520 t
i colAng1.NW_012115278v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e cebCap1.NW_016107707v1       279012 0 -   2086007 C
e manLeu1.NW_012102332v1       405971 27 -   3636681 I
e cerAty1.NW_012001462v1       358214 690 +   4116138 I
e rheMac8.chr7              164221432 0 - 169600520 C
e chlSab2.chr26              53789959 26 +  58131712 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T
e macFas5.chr7              165540867 0 - 171882078 C

a score=118666.000000
s hg38.chr15_KI270851v1_alt    136608 36 +    263054 tttctttctttctttttgagacagagttttcctttt
s panTro5.chr15               9393656 36 +  83230942 tttctttctttttttttttttgacagttttgctttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74014613 36 -  99763055 tttctttctttctttttgagacagagttttgctttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        63067 36 -    281578 tttctttctttctttttgagacagagttttgctttt
i gorGor5.CYUI01000141v1    I 4 C 0
s nomLeu3.chr6               70918937 36 + 121039945 tttttttttttttttttgaaacagagttttgctttt
i nomLeu3.chr6              I 8 C 0
s rheMac8.chr7              164221432 32 - 169600520 ----tttttttttttttgacacagagttttgctctt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165540867 31 - 171882078 -----ttttttttttttgacacagagttttgctctt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       380882 35 +   2379783 ttcctttttttttttttgacacagag-tttgctctt
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53789985 36 +  58131712 tttttttttttttttttgagacagagttttgctctt
i chlSab2.chr26             I 26 C 0
s colAng1.NW_012115278v1       384364 36 -   4457520 tttccttttttttttttgagacagagtcttgctctt
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       279012 29 -   2086007 -------Cttttttttttagactgagtttcactctt
i cebCap1.NW_016107707v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e manLeu1.NW_012102332v1       405971 27 -   3636681 I
e cerAty1.NW_012001462v1       358214 690 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=22858.000000
s hg38.chr15_KI270851v1_alt    136644 4 +    263054 gtca
s panTro5.chr15               9393692 4 +  83230942 gtca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74014649 4 -  99763055 gtca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        63103 4 -    281578 gtca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70918973 4 + 121039945 ttca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164221464 4 - 169600520 gtca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165540898 4 - 171882078 gtca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       380917 4 +   2379783 gtca
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53790021 4 +  58131712 gtca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       405998 4 -   3636681 gtca
i manLeu1.NW_012102332v1    I 27 C 0
s colAng1.NW_012115278v1       384400 4 -   4457520 gtca
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       279041 4 -   2086007 gtca
i cebCap1.NW_016107707v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e cerAty1.NW_012001462v1       358214 690 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=388872.000000
s hg38.chr15_KI270851v1_alt    136648 61 +    263054 cccaggctggagcgctatggtgcgatctcagctcactgcaacctctgcctcctg-ggttcaa
s panTro5.chr15               9393696 61 +  83230942 cccaggctggagtgctatggtgcgatctcagctcactgcaacctctgcctcctg-ggttcaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74014653 61 -  99763055 cccaggctggagtgctatggtgcgatctcagctcactgcaacctctgcctcctg-ggttcaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        63107 61 -    281578 cccaggctggagcgctatggtgcgatctcagctcactgcaacctctgcctcctg-ggttcaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70918977 61 + 121039945 cccaggctggagtgctatggtgcgatctcagctcactgcaacctctgcctcctg-ggttcaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164221468 61 - 169600520 cccaggctggagtcctatggtgcgatctcagctcactgcaacctctgcctcctg-ggttcaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165540902 61 - 171882078 cccaggctggagtcctatggtgcgatctcagctcactgcaacctctgcctcctg-ggttcaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       380921 57 +   2379783 -ccaggctggagtcctatggtgcgatctcagctcactgcaa----tgcctctggtggttcaa
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53790025 61 +  58131712 cccaggctggagtcctatggtgcgatctcagctcactgcaacctctgcctcctg-ggttcaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       406002 61 -   3636681 cccaggctggagtcctatggtgcgatctcagctcactgcaacctctgcctcctg-ggttcaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       384404 61 -   4457520 cccaggctggagtcctatggtgcgatctcagctcaccgcaacctctgcctcctg-ggttcaa
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       279045 61 -   2086007 cccaggctggagtgcaatggtacaatcccctcgcactgcaacctctgcctcctg-ggttcaa
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       344504 61 +   3831555 cccaggctggaatgcagtggtgaggtctcagcttactgcaacctccacctgcca-ggttcaa
i aotNan1.NW_018503298v1    N 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e cerAty1.NW_012001462v1       358214 690 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr6                3916852 90474 + 158406734 T

a score=1364392.000000
s hg38.chr15_KI270851v1_alt    136709 202 +    263054 gcgattctccagcctcagcctcctgagtagctgggattacaggtgcgtgccaccaggcctgactaatttttgtatttttagtagagacaggggtttcttcatgtcggtcaggctggtcttgaactcctcacctcaggtgatccac-cgcctcagcctcccaaagtgcaggcattacacgcgtaaaccactgcgcccggccAAA
s panTro5.chr15               9393757 202 +  83230942 gcgattctccagccccagcctcctgagtagctgggattacgggtgtgtgccaccaggcctggctaatttttgtatttttagtagagacaggggtttcttcatgttggtcaggctagtcttgaactcctgacctcaggtgatccac-cgcctcggtctcccaaagtgcagggattacaggcataaaccaccgcgcccggccAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74014714 202 -  99763055 gcgattctccagccccagcctcctgagtagctgggattacaggtgcgtgccaccaggcctgactaatttttgtatttttagtagagacaggggtttcttcatgtcggtcaggctggtcttgaactcctcacctcaggtgatccac-cgcctcagcctcccaaagtgcagggattacacgtgtaaaccactgcgcccggccAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        63168 202 -    281578 gcgattctccagcctcagcctcctgagtagctgggattacaggtgcgtgccaccaggcctgactaatttttgtatttttagtagagacaggggtttcttcatgtcggtcaggctggtcttgaactcctgacctcaggtgatccac-cgcctcagcctcccaaagtgcagggattacaggcgtaaaccactgcgcccggccAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70919038 202 + 121039945 gcgattctccagcctcagcctcctgagtagctgggattacaggtgcgtgccaccagacctggctaatttttgtatttttaataaaaacgggggtttcttcatgttggtcaggctggtcttgaactcctgacctcaggtgatccac-tgcctcggcctcccaaagtgctgggattacaggcataagccaccatgcccggccAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164221529 202 - 169600520 gcgattctccagcctcagcctcctgagtagctgggattacaggcgcgtgccaccaggtctggctaatttttgtattttcagtagagatgggggtttcttcatgttggtcaggctggtctagaactcctgacctcaggttatccac-tgcctgggcctcccaaagtgctgggattacaggtgtaagccactgcgcccggccAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165540963 202 - 171882078 gcgattctccagcctcagcctcctgagtagctgggattacaggcgcgtgccaccaggtctggctaatttttgtattttcagtagagatgggggtttcttcatgttggtcaggctggtctagaactcctgacctcaggttatccac-tgcctgggcctcccaaagtgctgggattacaggtgtaagccactgcgcccggccAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       380978 194 +   2379783 gcgattct-caggctcagcctc--gagtagctgggattacaggcgcgtgccaccaggtctggctaatttttgtattttcagtagagatgggggtttctt-atgt--gtcaggctggtctag-acacttgacctcaggttatccac-tgcctgggcctcccaaagtgct-ggattacaggtgtaagccactgcgcccggccAAA
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53790086 202 +  58131712 gcgattctccagccttagcctcctgaatagctgggattacaggcgcgtgccaccaggtctggctaatttttgtattttcagtagagatgggggtttcttcatgttggtcaggctggtctagaactcctgacctcaggtgatccac-tgcctgggcctcccaaagtgctgggattacaggtataagccactgcaccaggccAAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       406063 202 -   3636681 gcgattctccagcctcagcctcctgagtagctgggattacaggcgcgtgccaccaggtctggctaatttttgtattttcagtagaggtgggggtttcttcatgttggtcaggctggtctagaactcctgacctcaggttatccac-tgcctgggcctcccaaagtgctgggattacaggtgtaagccactgcgcccggccAAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       384465 202 -   4457520 gcgattctccagcctcagcctcctgagtagctgggattacaggcacgtgccaccaggtctggctaatttttgtattttcagtagagatggaggtttcttcatgttggtcaggctggtctagaactcctgacctcaggtgatccac-ggcctgggcctcccaaagtgctgggattacaagtgtaagccactgtgcccagccAAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55196583 202 + 190850796 gtgatccacccgcctcagcctcccaaagtgctgggattatgggcgtgagccactgcgcccggctaatttttgtatttttagtagagac-agggtttcttcatgtggggcaggctggtctcaaactcccgacctcaggtgatccgcccactttggcctcccaaagtgctgagattacaggtgtgagccaccacacccggtcAAA
i calJac3.chr3              n 90474 C 0
s cebCap1.NW_016107707v1       279106 202 -   2086007 gcagttctccagcctcagcctcctgattagctgggattacaggtgtgtgccaccacgcctggctaatttttgtatttttagtagagac-ggagtttcttcatgtgggtcaggctggtctcaaactcccgacctcaggtgatccgctcaccttggcctcccaaagtgctggtattacaggtgtgagccaccatgcccggccGAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       344565 199 +   3831555 gtgattctcctgcctccgcctcccaagtagctgggattacaggttcccaccaccacacccagctaatttttgtatttttagtaaagag-gaggtttcaccatgttggccaggctggtcttgaactcctgacctcaaatgacccacctgcctcaacctcccaaagtgctca---cgcaggagcgagccactgcAACCCACCAAA
i aotNan1.NW_018503298v1    C 0 C 0
e canFam3.chr3               59903236 11399 -  91889043 I
e cerAty1.NW_012001462v1       358214 690 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=227036.000000
s hg38.chr15_KI270851v1_alt    136911 28 +    263054 GTGGTGGA-TTTTTTTTCTCAGAAAATCT
s panTro5.chr15               9393959 29 +  83230942 GTGGTGGATTTTTTTTTCCCAGAAAATCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74014916 28 -  99763055 GTGGTGGA-TTTTTTTTCTCAGAAAATCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        63370 28 -    281578 GTGGTGGA-TTTTTTTTCTCAGAAAATCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70919240 28 + 121039945 GTGGTGGG-TTTTTTTTCTCAAAAAATCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164221731 28 - 169600520 GTGGTGGA-TTTTTTTCCTCAGAAAATCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165541165 28 - 171882078 GTGGTGGA-TTTTTTTCCTCAGAAAATCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       381172 28 +   2379783 GTGGTGGA-TTTTTTTCCTCAGAAAATCT
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53790288 28 +  58131712 GTGGTGGA-TTTTTTTTCTCACAAAATCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       406265 28 -   3636681 GTGGTGGA-TTTTTTTCCTCAGAAAATCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       384667 28 -   4457520 GTGGTGGA-TTTTTTTTCTCAGAAAATCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55196785 28 + 190850796 GTGGTGGA-TTTTTTTTCTCAGAAAATCT
i calJac3.chr3              C 0 I 1178
s cebCap1.NW_016107707v1       279308 28 -   2086007 GTGGTGGA-TTTTTTTTCTCAGAAAACCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       344764 27 +   3831555 GTGGTGGA--TTGTTTTCTTAGAAAATCA
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59914635 28 -  91889043 GTAGTGTT-TTCTTTTCCTCAAAAAATCT
i canFam3.chr3              I 11399 C 0
e cerAty1.NW_012001462v1       358214 690 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=342656.000000
s hg38.chr15_KI270851v1_alt    136939 45 +    263054 ATTCCATTCTTTTTCCAGAAACCAAATTTGTACAAGTTAACTAAA
s panTro5.chr15               9393988 45 +  83230942 ATTCCATTCTTTTTCCAGAAACCAAATTTGTACAAGTTAACTAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74014944 45 -  99763055 ATTCCATTCTTTTTCCAGAAACCAAATTTGTACAAGTTAACTAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        63398 45 -    281578 ATTCCATTCTTTTTCCAGAAACCAAATTTGTACAAGTTAACTAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70919268 45 + 121039945 ATTCCATTCTTTTTCCAGAAACCAAATTTGTACAAGTTAACTAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164221759 40 - 169600520 -----ATTATTTTTCCAGAAACCAAATTTGTACAAGTTAACTAAA
i rheMac8.chr7              C 0 I 318
s macFas5.chr7              165541193 36 - 171882078 -----ATTATTTTTCCAGAAACCAAATTTGTACAAGTTAAC----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       381200 44 +   2379783 ATTCCATTATTTTTCCAGAAACC-AATTTGTACAAGTTAACTAAA
i macNem1.NW_012011934v1    C 0 I 348
s chlSab2.chr26              53790316 45 +  58131712 ATTCCATTATTTTTCCAGAAATCAAATTTGTACAAGTTAACTAAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       406293 45 -   3636681 ATACCATTATTTTTCCAGAAATCAAATTTGTACAAGTTAACTAAA
i manLeu1.NW_012102332v1    C 0 T 5896
s colAng1.NW_012115278v1       384695 45 -   4457520 ATTCCATTATTTTTCCAGAAATCAAATTTGTACAAGTTAACTAAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55197991 45 + 190850796 ATTCCATTATTTTTCCAGAAGTCAAATTTATACAAGTTAACTAAA
i calJac3.chr3              I 1178 C 0
s cebCap1.NW_016107707v1       279336 45 -   2086007 ATTCCATTACTTTTCCAGAAATCAAATTTGCACAAGTTAACTAAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       344791 45 +   3831555 ATTCCATTATTTTTCCAGAAGTCAAATTTGTACAAGTTAACTAAA
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59914663 44 -  91889043 ATTCTATCATATTTCCACTAATCAAATTTTT-CTAGGTAACTAAC
i canFam3.chr3              C 0 C 0
e cerAty1.NW_012001462v1       358214 690 +   4116138 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=62359.000000
s hg38.chr15_KI270851v1_alt    136984 12 +    263054 ATAAATATTTAT
s panTro5.chr15               9394033 12 +  83230942 ATAAATATTTAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74014989 12 -  99763055 ATAAATATTTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        63443 12 -    281578 ATAAATATTTAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70919313 12 + 121039945 ATAAATATTTAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165541229 11 - 171882078 -TAAATACTTAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              53790361 12 +  58131712 ATAAATACTTAT
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115278v1       384740 12 -   4457520 ATAAATACTTAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55198036 12 + 190850796 ATAAATATTTAT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       279381 12 -   2086007 ATAAATATTTAT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       344836 12 +   3831555 ACAAATATTTAT
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59914707 12 -  91889043 ATAAATGTTTAC
i canFam3.chr3              C 0 C 0
e manLeu1.NW_012102332v1       406338 5896 -   3636681 T
e cerAty1.NW_012001462v1       358214 690 +   4116138 I
e macNem1.NW_012011934v1       381244 348 +   2379783 I
e rheMac8.chr7              164221799 318 - 169600520 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=5362.000000
s hg38.chr15_KI270851v1_alt    136996 1 +    263054 A
s panTro5.chr15               9394045 1 +  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74015001 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        63455 1 -    281578 A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70919325 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164222117 1 - 169600520 A
i rheMac8.chr7              I 318 C 0
s macFas5.chr7              165541240 1 - 171882078 A
i macFas5.chr7              C 0 I 309
s cerAty1.NW_012001462v1       358904 1 +   4116138 A
i cerAty1.NW_012001462v1    I 690 C 0
s chlSab2.chr26              53790373 1 +  58131712 A
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115278v1       384752 1 -   4457520 A
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55198048 1 + 190850796 G
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       279393 1 -   2086007 A
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       344848 1 +   3831555 G
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59914719 1 -  91889043 A
i canFam3.chr3              C 0 C 0
e manLeu1.NW_012102332v1       406338 5896 -   3636681 T
e macNem1.NW_012011934v1       381244 348 +   2379783 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=137294.000000
s hg38.chr15_KI270851v1_alt    136997 24 +    263054 CTCTAATTTTTTTGTTCTGAGGT----C
s panTro5.chr15               9394046 24 +  83230942 CTCTAATTTTTTTGTTCTGAGGT----C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74015002 28 -  99763055 CTCTAATTTTTTTGTTCTGAGGTCTTAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        63456 28 -    281578 CTCTAATTTTTTTGTTCTGAGGTCTTAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70919326 28 + 121039945 CTCTAATTTTTTTGTTCTGAGGTCTTAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164222118 24 - 169600520 CTCTAATTTTTTTGTTCTGAGGTC----
i rheMac8.chr7              C 0 I 4
s macFas5.chr7              165541550 24 - 171882078 CTCTAATTTTTTTGTTCTGAGGTC----
i macFas5.chr7              I 309 I 4
s cerAty1.NW_012001462v1       358905 24 +   4116138 CTCTAATTTTTTTGTTCTGAGGTC----
i cerAty1.NW_012001462v1    C 0 I 17
s chlSab2.chr26              53790374 24 +  58131712 CTCTAATTTTTTTGTTCTGAGGTC----
i chlSab2.chr26             C 0 I 4
s colAng1.NW_012115278v1       384753 24 -   4457520 CTCTATTTTTTTTGTTCTGAGGTC----
i colAng1.NW_012115278v1    C 0 I 4
s calJac3.chr3               55198049 24 + 190850796 CTCTATTCGTTTTGCTCTGAGGTC----
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       279394 24 -   2086007 TTCTtttttttttgttctgaggtc----
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       344849 24 +   3831555 CTCTATTCGTTTTGTTCTGAGGTC----
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59914720 22 -  91889043 CTCCA--TTTTTTGTTCTGAAGTT----
i canFam3.chr3              C 0 C 0
e manLeu1.NW_012102332v1       406338 5896 -   3636681 T
e macNem1.NW_012011934v1       381244 348 +   2379783 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=7098.000000
s hg38.chr15_KI270851v1_alt    137021 1 +    263054 T
s panTro5.chr15               9394070 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74015030 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        63484 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70919354 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164222146 1 - 169600520 T
i rheMac8.chr7              I 4 C 0
s macFas5.chr7              165541578 1 - 171882078 T
i macFas5.chr7              I 4 C 0
s chlSab2.chr26              53790402 1 +  58131712 T
i chlSab2.chr26             I 4 C 0
s colAng1.NW_012115278v1       384781 1 -   4457520 T
i colAng1.NW_012115278v1    I 4 C 0
s calJac3.chr3               55198073 1 + 190850796 T
i calJac3.chr3              C 0 I 4
s cebCap1.NW_016107707v1       279418 1 -   2086007 t
i cebCap1.NW_016107707v1    C 0 I 319
s aotNan1.NW_018503298v1       344873 1 +   3831555 T
i aotNan1.NW_018503298v1    C 0 I 4
s canFam3.chr3               59914742 1 -  91889043 T
i canFam3.chr3              C 0 C 0
e manLeu1.NW_012102332v1       406338 5896 -   3636681 T
e cerAty1.NW_012001462v1       358929 17 +   4116138 I
e macNem1.NW_012011934v1       381244 348 +   2379783 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=25150.000000
s hg38.chr15_KI270851v1_alt    137022  7 +    263054 ----GAGTTTT
s panTro5.chr15               9394071  7 +  83230942 ----GAGTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74015031  7 -  99763055 ----GAGTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        63485  7 -    281578 ----AAGTTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70919355  7 + 121039945 ----GAGTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164222147  7 - 169600520 ----GAGTTTT
i rheMac8.chr7              C 0 I 5
s macFas5.chr7              165541579  7 - 171882078 ----GAGTTTT
i macFas5.chr7              C 0 I 5
s chlSab2.chr26              53790403  7 +  58131712 ----GAGTTTT
i chlSab2.chr26             C 0 I 5
s colAng1.NW_012115278v1       384782  7 -   4457520 ----GACTTTT
i colAng1.NW_012115278v1    C 0 I 5
s calJac3.chr3               55198078  7 + 190850796 ----GATTTTT
i calJac3.chr3              I 4 C 0
s aotNan1.NW_018503298v1       344878  7 +   3831555 ----GATTTTT
i aotNan1.NW_018503298v1    I 4 C 0
s canFam3.chr3               59914743 10 -  91889043 TATTTATTTT-
i canFam3.chr3              C 0 C 0
e cebCap1.NW_016107707v1       279419 319 -   2086007 I
e manLeu1.NW_012102332v1       406338 5896 -   3636681 T
e cerAty1.NW_012001462v1       358929 17 +   4116138 I
e macNem1.NW_012011934v1       381244 348 +   2379783 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=36243.000000
s hg38.chr15_KI270851v1_alt    137029  6 +    263054 TAGAAT------
s panTro5.chr15               9394078  6 +  83230942 TAGAAT------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74015038  6 -  99763055 TAGAAT------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        63492  6 -    281578 TAGAAT------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70919362  6 + 121039945 TAGAAT------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164222159  6 - 169600520 TAGAAT------
i rheMac8.chr7              I 5 C 0
s macFas5.chr7              165541591  6 - 171882078 TAGAAT------
i macFas5.chr7              I 5 C 0
s macNem1.NW_012011934v1       381592  6 +   2379783 TAGAAT------
i macNem1.NW_012011934v1    I 348 C 0
s cerAty1.NW_012001462v1       358946  6 +   4116138 TAGAAT------
i cerAty1.NW_012001462v1    I 17 C 0
s chlSab2.chr26              53790415  6 +  58131712 TAGAAT------
i chlSab2.chr26             I 5 C 0
s colAng1.NW_012115278v1       384794  6 -   4457520 TAGAAT------
i colAng1.NW_012115278v1    I 5 C 0
s calJac3.chr3               55198085  6 + 190850796 AAGAAT------
i calJac3.chr3              C 0 I 5
s aotNan1.NW_018503298v1       344885  6 +   3831555 AAGAAT------
i aotNan1.NW_018503298v1    C 0 I 5
s canFam3.chr3               59914753 12 -  91889043 TAGGATTATAAT
i canFam3.chr3              C 0 C 0
e cebCap1.NW_016107707v1       279419 319 -   2086007 I
e manLeu1.NW_012102332v1       406338 5896 -   3636681 T
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=609282.000000
s hg38.chr15_KI270851v1_alt    137035 97 +    263054 TTTATCTTTACATGTTTAG-AAAAATTAGAAAATATAGATAGAACATAACCAAG-AAAATAATAAC-AACTTTCCTTCTGTT-CAAAGTTCATTA-CTATTA
s panTro5.chr15               9394084 97 +  83230942 TTTATCTTTACATGTTTAG-AAAAATTAGAAAATATAGATAAAACATAACCAAG-AAAATAATAAC-AACTTTCCTTCTGTT-CAAAGTTCATTA-CTATTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74015044 97 -  99763055 TTTATCTTTACATGTTTAG-AAAAATTAGAAAATATAGATAAAACATAACCAAG-AAAATAATAAC-AACTTTCCTTCTGTT-CAAAGTTCATTA-CTATTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        63498 97 -    281578 TTTATCTTTACATGTTTAG-AAAAATTAGAAAATATAGATAAAACATAATCAAG-AAAATAATAAC-AACTTTCCTTCTGTT-CAAAGTTCATTA-CTATTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70919368 94 + 121039945 TTTATCTTTACAAGTTTAG-AAAAATTAGAAAATATAGATAAAACATAACCAAG-AAAATAAT----ATCTTTCCTTCTGTT-CAAAGTTCATTA-CTATTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164222165 93 - 169600520 TTTATCTTTACATGTTCAG-AAAAATTAGAAAGTGTAGATAAAACATAATCAAT-AAAATAAT----GTCTTTCCTTCTGTT-C-AAGTTCATTA-CTATTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165541597 93 - 171882078 TTTATCTTTACATGTTCAG-AAAAATTAGAAAGTGTAGATAAAACATAATCAAT-AAAATAAT----GTCTTTCCTTCTGTT-C-AAGTTCATTA-CTATTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       381598 96 +   2379783 TTTATCTTTACATGTTCAG-GAAAATTAGAAAGTGTAGATAAAACATAATCAATAAAAATAAT----GTCTTTCCTTCTGTTCC-AAGTTCATTCTCTATTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       358952 92 +   4116138 TTTATCTTTACATGTTCAA-GAAAAATTAGAAGTGTAGATAAAACATAATCAAT-AAAATAAT----GTCTTTCCTTCTGTT-C--AGTTCATTA-CTATTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53790421 95 +  58131712 TTTATCTTTACATGTTCAGaaaaaattagaaagcatagataaaacataaccaat-aaaataat----GTCTTTCCTTCTGTT-CAAAGTTCATTA-CTATTA
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115278v1       384800 94 -   4457520 TTTATCTTTACATGTTCAG-aaaaaatagaaagtatagataaaacataaccaat-aaaataat----GTCTTTCCTTCTGTT-CAAAGTTCATTA-CTATTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55198096 92 + 190850796 TTTAGTTTTACATGTTT------AATTAGAAAATATAGTTAAAACATAACTAAG-AAAA-AACAGCAACTTTTCCTTCTGTT-CAAAGTTCATTA-CTACTA
i calJac3.chr3              I 5 C 0
s cebCap1.NW_016107707v1       279738 98 -   2086007 TTTAGCTTTACATGTTGAG-AAAAACCAGAAAATGTAGATAAAACATAACTAAG-AAAATAATTCCATGTTTTCCTTCTGTT-CAGAGTTCACTA-CTATTA
i cebCap1.NW_016107707v1    I 319 C 0
s aotNan1.NW_018503298v1       344896 92 +   3831555 TTTGGCTTTACATGTTT------AATTAGAAAATATAGATAAAACATAACTAAG-AAAA-AATGGCATCTTTTCCTTCTGTT-CAAAGTTCATTA-CTACTA
i aotNan1.NW_018503298v1    I 5 C 0
s canFam3.chr3               59914765 96 -  91889043 TTTATTTTTGTATGTTtag--agaattcgaaaacacagaca-agcataactaag-ggaataataacatcatttcccactgcc-caaagtttatca-gtatta
i canFam3.chr3              C 0 I 7593
e manLeu1.NW_012102332v1       406338 5896 -   3636681 T
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=420205.000000
s hg38.chr15_KI270851v1_alt    137132 55 +    263054 -gccgagtgcagtga-ctcacacctgtaatcctagcactttgggagactgaggcggg
s panTro5.chr15               9394181 55 +  83230942 -gccgagtgcagtga-ctcacacctgtaatcccagcattttgggagactgaggcggg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74015141 55 -  99763055 -gccgagtgcagtga-ctcacacctgtaatcccagcattttgggagactgaggcggg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        63595 55 -    281578 -gccgagtgcagtga-ctcacacctgtaatcccagcattttgggagactgaggcggg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70919462 55 + 121039945 -gccaagtgcagtga-ctcatacctgtaatcccagcattttgggagactgaggcggt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164222258 55 - 169600520 -gccgagtgcagtga-ctcacacctgtaatcccagcattttgggagactgaggcggg
i rheMac8.chr7              C 0 I 358
s macFas5.chr7              165541690 55 - 171882078 -gccgagtgcagtga-ctcacacctgtaatcccagcattttgggagactgaggcggg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       381694 56 +   2379783 ggccgagtgcagtga-ctcacacctgtaatcccagcattttgggagactggaggggg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       359044 56 +   4116138 -gctgagtgcagtgacctcacacctgtaatcccagcattttgggagactgaggtagg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53790516 55 +  58131712 -gccgagtgcagtga-ctcacacctggaatcccagcattttgggagactgaggcggg
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115278v1       384894 55 -   4457520 -gccgagtgcagtga-ctcacacctgtaatcccagcattttgggagactgaggcggg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55198188 54 + 190850796 -gctgagtgtagt-g-ctcacacctgtaatcccagcattttgggagactgaggcggc
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       279836 55 -   2086007 -gccaaacgcagtgg-ctcacacctgtactcccagcattttgggagactgaggtggc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       344988 55 +   3831555 -gccgagtgtagtgg-ctcacacctgtaatcccagcattttgggagactgaggcagc
i aotNan1.NW_018503298v1    C 0 C 0
e canFam3.chr3               59914861 7593 -  91889043 I
e manLeu1.NW_012102332v1       406338 5896 -   3636681 T
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=751131.000000
s hg38.chr15_KI270851v1_alt    137187 132 +    263054 cggatcacttg-agcccagga-gttcgagaccagcctggg-caacatggcaaaatcccgtc---tac-aaaaactacaaaaattagccaggtgtggttccat-gtgcctgcagtcccagctagtggcaaggctgaggtgg-
s panTro5.chr15               9394236 132 +  83230942 cggatcacttg-agcccagga-gttcgagatcagcctggg-caacatggcaaaatcctgtc---tac-aaaaactacaaaaattagccaggcgtggttgcat-gtgcctgcagtcccagctactgggaaggctgaggtgg-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74015196 132 -  99763055 cggatcacttg-agcccagga-gttcgagatcagcctggg-caacatgacaaaatcctgtc---tac-aaaaactacaaaaattagccaggcgtggttccat-gtgcctgcagtcccagctactgggaaggctgaggtgg-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        63650 132 -    281578 cggatcacttg-agccgagga-gttcgagaccagcctggg-caacatgacaaaatcctgtc---tac-aaaaaatacaaaaattagccaggcgtggttccat-gtgcctgcagtcccagctactggcaaggctgaggtgg-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70919517 132 + 121039945 cggatcacttg-agcccagga-gttcgagaccagcctggg-caacatggcaaaaccccgtc---tac-aaaaaacacaaaaattagccaggcgtggttgcat-gtgcctgcagtctcagctactggcaaggctgaggtgg-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165541745 134 - 171882078 tgggtcacttg-agcccagga-gttcaagaccagcctggt-caacatggcgaaatcctgtctc-tac-aaaaaatacaaaaattagccaggcgtggttgcaa-gtgcccgcagtcccagctactggcaaggctgaggtgg-
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011934v1       381750 136 +   2379783 tgggtcacttgaagcccagga-gttcaagaccagcctggt-caacatggcgaaatcctgtctcttac-aaaaaatacaaaaattagccaggcgtggttgcaaggtgcccg-agtcccagctactggcaaggctggagtgg-
i macNem1.NW_012011934v1    C 0 I 1
s cerAty1.NW_012001462v1       359100 136 +   4116138 tgggtcacttg-agcccaggatgttcaagaccagcctggtccaacatggcgaaaccctgtctc-tacaaaaaaatacaaaaatt-gccaggcgtggttgcaa-gtgcccgcagtcccagctactggcaaggctgaggtgg-
i cerAty1.NW_012001462v1    C 0 I 1
s chlSab2.chr26              53790571 134 +  58131712 tgggtcacttg-agcccagga-gttcaagaccagcctggg-caacatggcgaaaccctgtctc-tac-aaaaaatagaaaaattagccaggcggggttgcaa-gtgcccgcagtcccagctaccggcaaggctgaggtgg-
i chlSab2.chr26             C 0 I 1
s colAng1.NW_012115278v1       384949 134 -   4457520 tgggtcacttg-agcccagga-gttcaataccagcctggg-caacatggcaaaaccctgtctt-tac-aaaaaatacaaaaattagtcaggcgtggctgcaa-gtgcctgaagtcccagctactggcaaggctgaggtgg-
i colAng1.NW_012115278v1    C 0 I 1
s calJac3.chr3               55198242 133 + 190850796 tggatcacttg-agcccagga-gtttaagatcagcctggg-caacatggcaaaaccctctctc-tac-aaaaaatacaaaaattagctaggcgtgctgacat-gtgcctgcagtccc--tctccgggaaggctaaggtggg
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       279891 131 -   2086007 tggatcacttg-agtccagga-gttcaagaccagcctggg-caacatgt----accctgtctc-tac-aaaaaatacaaaaattagccaggcacgctggcat-gtgcccgcagtcccagctactgggaaggctaaggtggg
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       345043 135 +   3831555 tggatcacttg-agtccagga-gttcaagaccagcctcgg-caacatggcaaaaccccgtctc-tac-aaaaaatacaaaaattagccaggcgtgctgacat-atgcctgcagtcccagctactgggaaggctaaggtggg
i aotNan1.NW_018503298v1    C 0 C 0
e canFam3.chr3               59914861 7593 -  91889043 I
e manLeu1.NW_012102332v1       406338 5896 -   3636681 T
e rheMac8.chr7              164222313 358 - 169600520 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=1484165.000000
s hg38.chr15_KI270851v1_alt    137319 228 +    263054 agaac--cacctgaacccggtaagtcaag-----gctgcagtgGTG-CAGCctctgtcccccaggctggagtgcagtggtgcaatgtcggctcactgcaacctccgcctcccgggttcaagcgattctcctgcctcggcctcccgagtagctgggatt-acagt-cacgtgccaccacacctggctaa-tctttgtattttcagtagaga-a-ggggtctcatcatgttggccaggctgg-t
s panTro5.chr15               9394368 228 +  83230942 agaac--cacctgaacccggtaagtcaag-----gctgcagtgGTG-CAGCctctgtcccccaggctggagtgcagtggtgcaatgtcggctcactgcaacctccgcctcccgggttcaagcgattctcctgcctcggcctccccagtagctgggatt-acaga-cacgtgccaccacacctggctaa-tctttgtattttcagtagaga-a-ggggtctcatcatgttggccaggctgg-t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74015328 229 -  99763055 agaac--cacctgaacccggtaagtcaag-----gctgcagtgGTG-CAGCctctgtcccccaggctggagtgcagtggtgcaatgtcggctcactgcaacctccgcctcccgggttcaagcgattctcctgcctcggcctcccgagtagctgggatt-acagt-cacgtgccaccacacctggctaa-tctttgtattttcagtagaga-a-ggggtctcatcatgttggccaggctggtt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        63782 228 -    281578 agaac--cacctgaacccggtaagtcaag-----gctgcagtgGTG-CAGCctctgtcccctaggctggagtgcagtggtgcaatcttggctcactgcaacctccacctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggatt-acagt-cacgtgccaccacacctggctaa-tctttgtattttcagtagaga-a-ggggtctcatcatgttggccaggctga-t
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70919649 229 + 121039945 agaac--cacctgaacccggtaagtcaac-----gctgcactgGTG-CAGCctctgtcccccagactggagtgcagtggtgcaatcttggctcactgcaacctccgcctcccgggttccagcgattctcctgcctcagcctcccgagtagctgggatt-acagg-tgcacgccaccacacctggctaa-tctttgtatttttagtagaga-agggggtctcaccatgttggccaggctgg-t
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165541880 227 - 171882078 agaac--cacctgaagccggtaagtcaag-----gctgcagtgGTG-CAGCctctgtcccc-aggctggagtgcaggggtgcaatctcggctcactgtaacctccgcctcccggcttcaagcgattcttctgcctcagcctcccgagtagctgggatt-acagg-cacgggccaccacacctggctaa-tctttgtatttttagtagaga-a-ggggtctcacgatgttggccaggctgg-t
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011934v1       381887 223 +   2379783 agaac--cacctgaagccggtaagtcaag----tgctgT--TGGTG-CAGCctctgtcccc-aggctggagtgcaggggtgcaatctcgggtcactgtaacct-cgcct-ccggcttcaagcgatt-ttctgcc-cagcctcccgagtagctgggattaacagg-cacgggccaccacacctggctaa-tctttgtatttttagtagaga-a-ggggtctcacgatgttggccaggctgg-t
i macNem1.NW_012011934v1    I 1 C 0
s cerAty1.NW_012001462v1       359237 234 +   4116138 agaaacgcacctgaagccagtaagtcaagggcctgcagt--TGGTGTCAGCTCctgtcccc-aggctggagtgcaggggtgcaatctcagctcactgtaacctccgcctcccgggttccaacgcgattcctgcctcagcctcccgagtagct-ggatt-acaggccacgggccaccacacctggctaattttttgtatttttagtagaga-a-ggggtctcacgatgttggccaggctgg-t
i cerAty1.NW_012001462v1    I 1 C 0
s chlSab2.chr26              53790706 220 +  58131712 agaac--tacctgaagccggtaagtcaag-----gctg-------G-CAGCctctgtcccc-aggctggagtgcaggggtgcgatctcggctcactgtaacctccacctctcgggttcaagcgattcttctgcctcagcctcccgagtagctgggatt-acagg-cacgggtcaccacacccggctaa-tctttgtatttttagcagaga-a-ggggtctcacgattttggccaggctgg-t
i chlSab2.chr26             I 1 C 0
s manLeu1.NW_012102332v1       400442 227 -   3636681 AGAAC--CACCTGAAGCCGGTAAGTCAAG-----GCTGCAGTGGTG-CAGCctctgtcccc-aggctggagtgcaggggtgcaatctcggctcactgtaacctccgcctcccgggttcaagcgattcttctgcctcagcctcccgagtagctgggatt-acagg-cacgggccaccacacctggctaa-tctttgtatttttagtagaga-a-ggggtctcacgatgttggccaggctgg-t
i manLeu1.NW_012102332v1    T 5896 C 0
s colAng1.NW_012115278v1       385084 227 -   4457520 agaac--cacctgaagccggtaagtcaag-----gctgcagtgGTG-CAGCctctgtcccc-aggctggagtgcaggggtgcaatctcagctcactgtaacctccgcctcccgggttcaagcgattcttctgcctcagcctcccaagtagctgggatt-acagg-cacgggccaccacacccggctaa-tctttgtatttttagtagaga-c-ggggtctcatgatgttggccaggctgg-t
i colAng1.NW_012115278v1    I 1 C 0
s calJac3.chr3               55198375 228 + 190850796 agaac--aacctgaacccgggaagttgag-----gctgcagtgGTG-CAGTctctgctgcccaggctggagtgcagt-gtgcaatctcggctcactgcaatctcgacctgctgggtttaagcgattttcctgcctcagcctcccgagtagatggaatt-acagg-cacccaccaccacacccggctaa-tttttgtattgttagtagagacg-ggggtctgaccatgctggccaggctgg-t
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       280022 229 -   2086007 agaac--cacctgaacccgggaagttgag-----actgcagtgCTG-CAGTctctgttgcccaggctggagtgcagtggtgagatctcggcttactgcaacctccacctgccaggttcaagtgattctcctgcctcagcctcccgagtagctgggatt-acaag-cgcccaccactacacccggctaattttttttatttttagtaaaga-g-gaggtttcaccatgttggccaggctgg-t
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       345178 206 +   3831555 agaac--aacctgaacctgggaagttgag-----gctg-----------------------caggctggagtgcagt-gtgcaatcttggctcactgcaatctccacttgctgggttcaagcgattctcctgcctcagcctcccgagtagctggaatt-acagg-cacccaccaccacacccagctaa-tttttgtattgttagtagagacg-ggggtctgaccatgttggccaggctgg-t
i aotNan1.NW_018503298v1    C 0 I 839
e canFam3.chr3               59914861 7593 -  91889043 I
e rheMac8.chr7              164222313 358 - 169600520 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=289865.000000
s hg38.chr15_KI270851v1_alt    137547 45 +    263054 tttgaactcct-gacctcaaatgatccacctgctctggcc--tcccaa
s panTro5.chr15               9394596 45 +  83230942 tttgaactcct-gacctcaaatgatccacctgctctggcc--tcccaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74015557 45 -  99763055 tttgaactcct-gacctcaaatgatccacctgctctggcc--tcccaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64010 45 -    281578 tttgaactcct-gacctcaaatgatccacctgctccggcc--tcccaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70919878 45 + 121039945 tttgaactcct-gacctcaaatgatccacctgccttgccc--tcccaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165542107 45 - 171882078 cttgaactcct-gacctcaaatgatccacctgcctcgacc--tcccaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       382110 48 +   2379783 cttgaactcctggacctcaaatgatccacctgcctcgaccctccccaa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       359471 45 +   4116138 cttgaactcct-gacctcaaatgatccacctgcctcgacc--tcccaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53790926 45 +  58131712 cttgaactcct-gacctcaaatgatccacctgcctcgacc--tcccaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       400669 45 -   3636681 cttgaactcct-gacctcaaatgatccacctgcctcgacc--tcccaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       385311 45 -   4457520 cttgaactcct-gacctcaaatgatccacctgcctcgacc--tcccaa
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55198603 45 + 190850796 cttgaactcct-gacctcaaatgacccacctgccttggct--tcccaa
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       280251 45 -   2086007 cttgaactcct-gacctcaaatgacccacctgccttggcc--tttcaa
i cebCap1.NW_016107707v1    C 0 C 0
e canFam3.chr3               59914861 7593 -  91889043 I
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e rheMac8.chr7              164222313 358 - 169600520 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=286194.000000
s hg38.chr15_KI270851v1_alt    137592 39 +    263054 agtgctgggattaca-ggcctgagccaccacgcccggccG
s panTro5.chr15               9394641 39 +  83230942 agtgctgggattaca-ggcctgagccaccacgcccggcTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74015602 39 -  99763055 agtgctgggattaca-ggcctgagccaccacgcccggcTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64055 39 -    281578 agtgctgggattaca-ggcctgagccaccacgccccgccG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70919923 39 + 121039945 agtgctgggattaca-ggtgtgagccaccacgcccggccG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164222671 39 - 169600520 agtgctgggattaca-ggcatgagccaccacgcccggcAG
i rheMac8.chr7              I 358 I 1
s macFas5.chr7              165542152 39 - 171882078 agtgctgggattaca-ggcatgagccaccacgcccggcAG
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011934v1       382158 40 +   2379783 agtgctgggattacagggcatgagccaccacgcccggcAG
i macNem1.NW_012011934v1    C 0 I 7
s cerAty1.NW_012001462v1       359516 39 +   4116138 agtgctgggattaca-ggcatgagccaccacgcccggcAG
i cerAty1.NW_012001462v1    C 0 I 1
s chlSab2.chr26              53790971 39 +  58131712 agtgccgggattata-ggcatgagcccccacgcccggccG
i chlSab2.chr26             C 0 I 1
s manLeu1.NW_012102332v1       400714 39 -   3636681 agtgctgggattaca-ggcatgagccaccacgcccggcAG
i manLeu1.NW_012102332v1    C 0 I 1
s colAng1.NW_012115278v1       385356 39 -   4457520 agtgctgggattata-ggcatgagccaccacgcccggccG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55198648 40 + 190850796 agtgttgggattacagggggcgagccaccacccccggccG
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       280296 39 -   2086007 agtgttgggattaca-ggcgcgagccaccacgcccagccG
i cebCap1.NW_016107707v1    C 0 C 0
e canFam3.chr3               59914861 7593 -  91889043 I
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=35750.000000
s hg38.chr15_KI270851v1_alt    137631 17 +    263054 --ttatttttctttcttag
s panTro5.chr15               9394680 17 +  83230942 --TTAtttttctttcttag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74015641 17 -  99763055 --TTAtttttctttcttag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64094 17 -    281578 --TTAtttttctttcttag
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70919962 17 + 121039945 --GTAtttttctttcttag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164222711  7 - 169600520 ------------TTCTTAC
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              165542192  7 - 171882078 ------------TTCTTAC
i macFas5.chr7              I 1 C 0
s cerAty1.NW_012001462v1       359556  7 +   4116138 ------------TTCTTAC
i cerAty1.NW_012001462v1    I 1 C 0
s chlSab2.chr26              53791011 16 +  58131712 --T-Atttttctttcttag
i chlSab2.chr26             I 1 C 0
s manLeu1.NW_012102332v1       400754  7 -   3636681 ------------TTCTTAC
i manLeu1.NW_012102332v1    I 1 C 0
s colAng1.NW_012115278v1       385395 17 -   4457520 --GTAtttttctttcttag
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55198688 19 + 190850796 ATGtttttctctttcctag
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       280335 19 -   2086007 GTGtttttctctttcctag
i cebCap1.NW_016107707v1    C 0 C 0
e canFam3.chr3               59914861 7593 -  91889043 I
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e macNem1.NW_012011934v1       382198  7 +   2379783 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=1933940.000000
s hg38.chr15_KI270851v1_alt    137648 261 +    263054 aggcaggatctcactctg--tcgcccaggctggagtgcagtggcacgatctaagctcactgtagcattgatctcccaggctcaggcgattctcctgtctcagcctcccgagcagctgggatcacaggtgtgtgccaccacacctggctaattgttaaatttttttattttta-ttttttagagatggggtcttgctatgttgcccagtctggcaacat-------------------------gggatcctcccgcttcggcctcccaaagcgctgagaattacatacg
s panTro5.chr15               9394697 286 +  83230942 aggcaggatctcactctg--tcgcccaggctggagtgcggtggcacgatctcagctcactgtagcattgatcttccaggctcaggcgattctcctgtctcagcctcccgagcagctgggatcacaggtgtgtgccaccacagctggcgaattgttaaatttttttattttta-ttttttagagatggggtcttgccatgttgcccagtctggcaacatgggatcctccaactcctggcttcgagggatcctcccgcttcggcctcccaaagcgctgagaattacatacg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74015658 284 -  99763055 aggcaggatctcactctg--tcgcccaggctggagtgcggtggcacgatctcagctcactgtagcattgatcttccaggctcaggcgattctcctgtctcagcctcccgagcagctgggatcacacgtgtgtgccaccacacctggctaattgttaaatttttt--attttg-ttttttagagatggggtcttgctatgttgcccagtctggcaacatgggatcctccaactcctggcttcgagggatcctctcgcttcggcctcccaaagcgctgagaattacatacg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64111 278 -    281578 aggcaggatctcactctg--tcgcccaggctggagtgcggtggcac-atctcagctcactgtagcattgatctcccaggctcaggcgattctcctgtctcagcctccagagcagctgtgatcacaggtgtgtgccaccacacctggctaattgttaaatttttttatttttatttttttagagatggggtcttgctatgttgcccagtttggcaacatgggatcctccaactcctggct--------tcctcccgcttcggcctcccaaagcgctgagaattacatacg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70919979 280 + 121039945 aggccggatctcact--------cccaggctggagtgcggtggcaccatctcaactcactgtagcattgacctcccaggctcaggcgattctcctgactcagcctcccgagcagctgggatcacaggtgtgtgccaccacacctggctaattgttaaatttatttattttta-ttttttagggatggggtcttgctatgttgcccactctggcaacataggatcctccaactcctggcttcgagggatcctcccgcttcaggctcccaaagcgctgaaaattgcagacg
i nomLeu3.chr6              C 0 M 364
s rheMac8.chr7              164222718 280 - 169600520 aggcaggatctcactctg--tcacccaggttggagtgcagtggcatgatctcagctcactgtagcattgacctccca-gctcaggcgattctcttgtctcagcctcctgagcagctgggatcacaggtgtgtgccaccacacctggctaattgttaagttttttg-----tt-ttttttagagatggggtcttgctatgttacccagtctggcaacatgggatcctccaactcctggcttcgagggatcctcccgcttcggcgtcccaaagcgctgaaaattacagacg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542199 280 - 171882078 aggcaggatctcactctg--tcacccaggttggagtgcagtggcatgatctcagctcactgtagcattgacctccca-gctcaggcgattctcttgtctcaccctcctgagcagctgggatcacaggtgtgtgccaccacacctggctaattgttaagttttttg-----tt-ttttttagagatggggtcttgctatgttacccagtctggcaacatgggatcctccaactcctggcttcgagggatcctcccgcttcggcgtcccaaagcgctgaaaattacagacg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       382205 282 +   2379783 aggcaggatctcactctggatcacccaggctggagtgcagtggcatgatctcagctcactgtagcattgacctccca-gctcaggcgattctcttgtctcagcctcctgagcagctgggatcacaggtgtgtgccaccacacctggctaattgttaagttttttg-----tt-ttttttagagatggggtcttgctatgttacccagtctggcaacatgggatcctccaactcctggcttcgagggatcctcccgcttcggcgtcccaaagcgctgaaaattacagacg
i macNem1.NW_012011934v1    I 7 C 0
s cerAty1.NW_012001462v1       359563 280 +   4116138 aggcaggatctcactctg--tcgcccaggctggagtgcagtggcatgatctcagctcactgtagcattgacctccca-gctcaggcgattctcttgtctcagcctcctgagcagctgggatcacaggtgtgtgccaccacacctggctaattgttaagttttttg-----tt-ttttttagagatggggtcttgctatgttacccagtctggcaacatgggatcctccaactcctggctttgagggatcctcccgcttcggcgtcccaaagcgctgaaaattacagacg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53791027 281 +  58131712 aggcaggatctcactctg--tcgcccaggctggagtgcagtggcatgatctcagcttactgtagcattgacctccca-gctcaggcgattctcttgtctcagcctcctgagcagctgggatcacaggtgtgtgccaccacacctggctaactgttaagttttttg----ttt-ttttttagagatggggtcttgctatgttacccagtctggcaacatgggatcctccaactcctggcttcgagggatcctcccgcttcggcgtcccaaagcgctgaaaattacagacg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       400761 280 -   3636681 aggcaggatctcactctg--tcgcccaggctggagtgcagtggcatgatctcagctcactgtagcattgacctccca-gctcaggcgattctcttgtctcagcctcctgagcagctgggatcacaggtgtgtgccaccacacctggctaattgttaagttttttg-----tt-ttttttagagatggggtcttgctatgttacccagtctggcaacatgggatcctccaactcctggcttcgagggatcctcccgcttcggcgtcccaaagcgctgaaaattacagacg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       385412 280 -   4457520 aggcaggatctcactctg--tcgcccagactggagtgcagtggcatgatctcagctcactgtagcactgacctccca-gctcaggcgattctcttgtctcagcctcctgagcagctgggatcacaggtgtgtgccaccacacctggctaattgttaagttttttg-----tt-ttttttagagatggggtcttgctatgttacccagtctggcaacatgggatcctccaactcctggcttcgagggatcctcccgtttcggcgtcccaaagcgctgaaaatgacagacg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55198707 245 + 190850796 aggcaggatctcactctg---cgcccaggctagagtgcagtggcaagatctcagctcactgtagcattgaactccccagctaaggcgattctcctgcctcagcctccagagtagctgggatcacaggtgtgagccaccacacccggctaa----------tttgt-----tt-ttttgtagagatggtgtcttgttatgttgcccagtctggcaacac-------------------------gggatcctcccgccttggcctcccaaagcgctaaaaattacacacg
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       280354 246 -   2086007 aggcaggatctcactctg---cgcccagcctagagtgcagtggcacgatctcagctcactgtaacattgaactccccagctaaggcgattctcctgcctcagcctccagagtagctgggatcacaggtgtgtgccaccacacctggctaattttttttttttttt-----tt-ttttgtagagatggtgtcttgctatgttgcccagtctggcaacac-------------------------gggatcctcccgcctcggcctcccaaagcgc---------cacacg
i cebCap1.NW_016107707v1    C 0 C 0
e canFam3.chr3               59914861 7593 -  91889043 I
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=175042.000000
s hg38.chr15_KI270851v1_alt    137909 25 +    263054 tgagccaccacgcccggccTATATT
s panTro5.chr15               9394983 25 +  83230942 tgagccaccatgcccagccTATATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74015942 25 -  99763055 tgagccaccatgcccggccTATATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64389 25 -    281578 tgagccaccatgcccggccTATATT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164222998 25 - 169600520 tgagccaccatgcccggccTATATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542479 25 - 171882078 tgagccaccatgcccggccTATATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       382487 25 +   2379783 tgagccaccatgcccggccTATATT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       359843 25 +   4116138 tgagccaccatgcccggccTATATT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53791308 25 +  58131712 tgagccaccatgccaggccTATATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       401041 25 -   3636681 tgagccaccatgcccggccTATATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       385692 25 -   4457520 tgagccaccatgcccagccTATATT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55198952 25 + 190850796 tgagccaccgtgcccggccTATATT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       280600 25 -   2086007 tgagccaccgtacccagccTATATT
i cebCap1.NW_016107707v1    C 0 C 0
e canFam3.chr3               59914861 7593 -  91889043 I
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e nomLeu3.chr6               70920259 364 + 121039945 M
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=194437.000000
s hg38.chr15_KI270851v1_alt    137934 31 +    263054 GTTTTATAGTTCTTCAATTTTGTTTTGTGGT
s panTro5.chr15               9395008 31 +  83230942 GTTTTATAGTTCTTCAATTTTGTTTTGTGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74015967 31 -  99763055 GTTTTATAGTTCTTCAATTTTGTTTTGTGGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64414 31 -    281578 GTTTTATAGTTCTTCAATTTTGTTTTGTGGT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164223023 31 - 169600520 GTTTTATGTTTCTTCACTTTTGTTTTGTGGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542504 31 - 171882078 GTTTTATGTTTCTTCACTTTTGTTTTGTGGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       382512 31 +   2379783 GTTTTATGTTTCTTCACTTTTGTTTTGTGGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       359868 31 +   4116138 GTTTTATGTTTCTTCAGTTTTGTTTTGTGGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53791333 31 +  58131712 GTTTTATGTTTCTTCAGTTTTGTTTTGTGGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       401066 31 -   3636681 GTTTTATGTTTCTTCAGTTTTGTTTTGTGGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       385717 31 -   4457520 GTTTCCTAGTTCTTCAATTTCGTTTTGTGGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55198977 31 + 190850796 GCTTTATATTTCTTAAATTTGGCTTTGTGGT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       280625 31 -   2086007 GCTTTATATTTCTTAAATTTGGCTTTGTGGT
i cebCap1.NW_016107707v1    C 0 I 393
s canFam3.chr3               59922454 29 -  91889043 GTTTTGT--TCCTTAGGATTTGCTTTAGGGT
i canFam3.chr3              I 7593 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e nomLeu3.chr6               70920259 364 + 121039945 M
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=107758.000000
s hg38.chr15_KI270851v1_alt    137965 21 +    263054 --CGCT--GGAGG--TGTTTCCTTCTT
s panTro5.chr15               9395039 21 +  83230942 --CGCT--GGAGG--TGTTTCCTTCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74015998 21 -  99763055 --CGCT--GGAGG--TGTTTCCTTCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64445 21 -    281578 --CGCT--GGAGG--TGTTTCCTTCTT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164223054 23 - 169600520 --CGCT--GGAGGTCTGTTTCCTTCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542535 23 - 171882078 --CGCT--GGAGGTCTGTTTCCTTCTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       382543 22 +   2379783 --CGCT--GGAGGTCTGTTT-CTTCTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       359899 23 +   4116138 --CGCT--GGAGGTCTGTTTCCTTCTC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53791364 23 +  58131712 --CGCT--GGAGGTCTGTTTCCTTCTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       401097 23 -   3636681 --CGCT--GGAGGTCTGTTTCCTTCTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       385748 23 -   4457520 --CACT--GGAGGTCTGTTTCCTTCTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55199008 25 + 190850796 --CGGCGGGGAGGTCTGTTTCCttttt
i calJac3.chr3              C 0 I 298
s canFam3.chr3               59922483 24 -  91889043 GGTACT--AGAAGT-AGATTCCTCCTC
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e cebCap1.NW_016107707v1       280656 393 -   2086007 I
e nomLeu3.chr6               70920259 364 + 121039945 M
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=550310.000000
s hg38.chr15_KI270851v1_alt    137986 106 +    263054 -CGATTCCCTGcacagtgcttccacagctgctccatggaatctgcccaagacttttgctgcgttcagttgaacacacaggaggaagCTCTTC-AGGCCCCAG-------CCAGCC------
s panTro5.chr15               9395060 106 +  83230942 -TGATTCCCTGcacagtgcttccacagctgctccatggaatctgcccaagacttttgctgcgttcagttgaacacacaggaggaagCTCTTC-AGGCCCCAG-------CCAGCC------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016019 106 -  99763055 -TGATTCCCTGcacagtgcttccacagctgctccatggaatctgcccaagacttttgctgcgttcagttgaacacacaggaggaagCTCTTC-AGGCCCCAG-------CCAGCC------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64466 106 -    281578 -CGATTCCCTGcacagtgcttccacagctgctccatggaatctgcccaagacttttgctgcgttcagttgaacacacaggAGGAAACTCTTC-AGGCCCCAG-------CCAGCC------
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164223077 106 - 169600520 -GGATTCCCTGCGCAGTGCTTCCacagctgctccatgtaatctgcccaagacttctgctgcattcagttgaacacataggataaagCTCTTC-AGGCCCGAG-------AGAGCC------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542558 106 - 171882078 -GGATTCCCTGCGCagtgcttccacagctgctccatgtaatctgcccaagacttctgctgcattcagttgaacacataggataaagCTCTTC-AGGCCCGAG-------AGAGCC------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       382565 105 +   2379783 -GGATTCCCTGCACAGTG-TTCCacagctgctccacgtaatctgcccaagacttctgctgcattcagttgaacacataggaggaagCTCTTC-AGGCCCGAG-------AGAGCC------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       359922 106 +   4116138 -GGATTCCCTGCGCAGTGCTTCCacagctgctccatgtaatctgcccaagacttctgctgcattcagttgaacacataggaggaagCTCTTC-ACGCCCGAG-------AGAGCC------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53791387 106 +  58131712 -TGATTCCCTGCGCAGTGCTTCCACAGCTGCCCCATGTAATCCGCCCAAAACTTCTGCTGCATTCAGTTGGACACACAGGAGGAAGCTCTTC-AGGCCCGAG-------AGAGCC------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       401120 106 -   3636681 -GGATTCCCTGCGCAGTGCTTCCacagctgctccatgtaatctgcccaagacttctgctgcactcagttgaacacataggaggaagCTCTTC-AGGCCCGAG-------AGAGCC------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       385771 106 -   4457520 -GGATTCCCTGcacagtgcttccacagctgctccatgtaatctgcccaagacttttgctgcattcagttgaacacagaggaggaagtTCTTC-AGGCCCGAG-------AGAGCC------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55199331 101 + 190850796 -TGATTCCCGGcatagtccttccacagcagttccatgcaatcggcccaagacttttgctgcattcagttgaacagacagggggaagCTCTTC-AAGCC------------GCGCT------
i calJac3.chr3              I 298 C 0
s canFam3.chr3               59922507 112 -  91889043 TGAGGCCCCTGC----TGC-----CAGCCGCGCCAGGAATTGTACTTAGGCTGTTAGCAGCTTTCAAGGGGGTATCCGGGAGGAGGCTCAGCTTGGCTCGGGTGTCACCTGAACCTACGCC
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e cebCap1.NW_016107707v1       280656 393 -   2086007 I
e nomLeu3.chr6               70920259 364 + 121039945 M
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=94328.000000
s hg38.chr15_KI270851v1_alt    138092 14 +    263054 GACCGCACAAAGAT
s panTro5.chr15               9395166 14 +  83230942 GACTGCACAAAGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016125 14 -  99763055 GACCGCACAAAGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64572 14 -    281578 GACCGCACAAAGAT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164223183 14 - 169600520 GACCGCACGAAGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542664 14 - 171882078 GACCGCACGAAGAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       382670 14 +   2379783 GACCGCACGAAGAT
i macNem1.NW_012011934v1    C 0 I 1606
s cerAty1.NW_012001462v1       360028 14 +   4116138 GACCGCACGAAGAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53791493 14 +  58131712 GACCGCACGAAGAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       401226 14 -   3636681 GACCGCACGAAGAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       385877 14 -   4457520 GACCGCACGAAGAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55199432 14 + 190850796 GACCTCTCAAAGAT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       281049 14 -   2086007 GACCGCACAGAGAT
i cebCap1.NW_016107707v1    I 393 C 0
s canFam3.chr3               59922619 14 -  91889043 CACCGCACCCCGAG
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e nomLeu3.chr6               70920259 364 + 121039945 M
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=175802.000000
s hg38.chr15_KI270851v1_alt    138106 40 +    263054 GCGTTCTCATACCCAGGGGAGCTGGTCTCGC-CACTCGACC
s panTro5.chr15               9395180 20 +  83230942 --------------------CCTGGTCTCGC-CACTCGACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016139 40 -  99763055 ACGTTGTCATACCCAGGGGAGCTGGTCTCGC-CACTCGACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64586 40 -    281578 CCGTTCTCATACCCAGGGGAGCTGGTCTCGC-CACTCGACC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164223197 40 - 169600520 CCGGTGTCATCTCCAGGAGAGCTGGTCTCGC-CACTCGACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542678 40 - 171882078 CCGGTCTCATCTCCAGGAGAGCTGGTCTCGC-CACTCGACC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       360042 40 +   4116138 CCGGTCTCATCTCCAGGAGAGCTGGTCTCGC-CACTCGACC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53791507 40 +  58131712 CCGGTCTCCTCTCCAGGAGAGCTGGTCTCGC-CACTCGACC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       401240 40 -   3636681 CCGGTCTCATCTCCAGGAGAGCTGGTCTCGC-CACTCGACC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       385891 40 -   4457520 CCGTTCTCATCTCCAGGAGAGCTGGTCTCGC-CACTCCACC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55199446 40 + 190850796 GCCTTCTCATCCCCAGGGGAGCCGGACTCGC-CACCTGACC
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       281063 40 -   2086007 GCGTCCGCATCCCCAGCGGAGCCGGACTCGC-CACTGGACC
i cebCap1.NW_016107707v1    C 0 I 165
s canFam3.chr3               59922633 39 -  91889043 --GGCTCCCGGTCCAGCACAGCAGCTTCCGCGCGCTCCACC
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e nomLeu3.chr6               70920259 364 + 121039945 M
e macNem1.NW_012011934v1       382684 1606 +   2379783 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=171523.000000
s hg38.chr15_KI270851v1_alt    138146 44 +    263054 GGCGCCCTGGATAGCTATAGTTAGTGTGAGCGCCACCACCCGCC
s panTro5.chr15               9395200 44 +  83230942 CGCGCCCTGGATAGCTCCAGTTAATGTGAGCGCGACCACCCGCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016179 44 -  99763055 CGCGCCCTGGATAGCTCCAGTTAATGTGAGCGCCACCACCCGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64626 44 -    281578 CGCGCCCTGGACAGCTATAGTTAGTGTGAGCGCGACCACCCGCC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164223237 44 - 169600520 AGCGCCCTGGACAGCTCCAGTCAGTGTGAGCGCGGCCACCCGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542718 44 - 171882078 AGCGCCCTGGACAGCTCCAGTCAGTGTGAGCGCGGCCACCCGCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       360082 44 +   4116138 AGCGCCCTGGACACCTCCACTTAGTGTGAGCGCGGCCACCCGCC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53791547 44 +  58131712 AGCGCCCTGGACAGCTCCAGTTAGTGCGAGCGCGGCCACCCGCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       401280 44 -   3636681 AGCGCCCTGGACAGCTCCAGTTAGTGCGAGCGCGGCCACCCGCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       385931 44 -   4457520 AGCGCCCTGGACAGCTCCAGTTAGTGTGAGCGCGACCACCCGCC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55199486 30 + 190850796 ---GCCACG-----------CCAGTGTAAGCGCGACCACCCGCC
i calJac3.chr3              C 0 I 859
s canFam3.chr3               59922672 29 -  91889043 --CCGCCCGCAGGGCTT-------------CGCGAGCACTCTGC
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e cebCap1.NW_016107707v1       281103 165 -   2086007 I
e nomLeu3.chr6               70920259 364 + 121039945 M
e macNem1.NW_012011934v1       382684 1606 +   2379783 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=38529.000000
s hg38.chr15_KI270851v1_alt    138190 13 +    263054 GCGGCGTGATCAA
s panTro5.chr15               9395244 13 +  83230942 GCGGCGTGATTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016223 13 -  99763055 GCGGCGTGATCAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64670 13 -    281578 GCGGCGTGATCGA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164223281 13 - 169600520 GCCGCGAGATTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542762 13 - 171882078 GCCGCGAGATTAA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       360126 13 +   4116138 GCCGCGAGATTAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53791591 13 +  58131712 GCCGCGAAATTAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       401324 13 -   3636681 GCCGCGAGATTAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       385975 13 -   4457520 GTCGCGAGATTAA
i colAng1.NW_012115278v1    C 0 C 0
s canFam3.chr3               59922701 13 -  91889043 GGACCGCGACCCG
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e cebCap1.NW_016107707v1       281103 165 -   2086007 I
e nomLeu3.chr6               70920259 364 + 121039945 M
e macNem1.NW_012011934v1       382684 1606 +   2379783 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr3               55199516 859 + 190850796 I

a score=133335.000000
s hg38.chr15_KI270851v1_alt    138203 32 +    263054 GAGCGCTCCGGGCC--AAGCAGT----CTCCCGTGGGA
s panTro5.chr15               9395257 32 +  83230942 GAGCGCTGGGAGCC--AAGCCGT----CTCCCGTGGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016236 32 -  99763055 GAGCGCTCAGGGCC--AAGCAGT----CTCCCGTGGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64683 28 -    281578 GAGCGCTCCGGCCC--A----GT----CTCCCGTGGGA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164223294 32 - 169600520 GAGCGCTCGGGGCC--AGGAAGT----CTCCCGTGGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542775 32 - 171882078 GAGCGCTCGGGGCC--AGGAAGT----CTCCCGTGGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       384290 31 +   2379783 GAGCGCTCGGGGCC--AGGAAGT-----TCCCGTGGGA
i macNem1.NW_012011934v1    I 1606 C 0
s cerAty1.NW_012001462v1       360139 32 +   4116138 GAGCGCTCGGGGCC--AGGAAGT----CTCCCGTGGGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53791604 32 +  58131712 GAGCTCTCGGAGCC--AGGAAGT----CTCCCGTGGGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       401337 32 -   3636681 GAGCGCTCGGGGCC--AGGAAGT----CTCCCGTGGGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       385988 32 -   4457520 GAGCGCTCGGCGCC--AGGAAGT----CTCCCGTGGGA
i colAng1.NW_012115278v1    C 0 C 0
s canFam3.chr3               59922714 38 -  91889043 GAGCGCCTGCGTGCGGAGGAAGTTCCGCCCCCACGCGC
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e cebCap1.NW_016107707v1       281103 165 -   2086007 I
e nomLeu3.chr6               70920259 364 + 121039945 M
e saiBol1.JH378292            2359946 86988 +   2682657 T
e calJac3.chr3               55199516 859 + 190850796 I

a score=19998.000000
s hg38.chr15_KI270851v1_alt    138235 3 +    263054 gtg
s panTro5.chr15               9395289 3 +  83230942 gtg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016268 3 -  99763055 gtg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64711 3 -    281578 GTG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164223326 3 - 169600520 GTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542807 3 - 171882078 GTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       384321 3 +   2379783 GTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       360171 3 +   4116138 GTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53791636 3 +  58131712 GTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       401369 3 -   3636681 GTG
i manLeu1.NW_012102332v1    C 0 T 45125
s colAng1.NW_012115278v1       386020 3 -   4457520 GTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55200375 3 + 190850796 gtg
i calJac3.chr3              I 859 C 0
s canFam3.chr3               59922752 3 -  91889043 CTG
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e cebCap1.NW_016107707v1       281103 165 -   2086007 I
e nomLeu3.chr6               70920259 364 + 121039945 M
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=20061.000000
s hg38.chr15_KI270851v1_alt    138238 5 +    263054 cggga
s panTro5.chr15               9395292 5 +  83230942 cgggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016271 5 -  99763055 cgggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64714 5 -    281578 CGGGA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164223329 5 - 169600520 AGGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542810 5 - 171882078 AGGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       384324 5 +   2379783 AGGGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       360174 5 +   4116138 AGGGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53791639 5 +  58131712 CGGGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       356247 5 -   3636681 CGGGC
i manLeu1.NW_012102332v1    T 45125 C 0
s colAng1.NW_012115278v1       386023 5 -   4457520 CGGGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55200378 5 + 190850796 cgtgc
i calJac3.chr3              C 0 C 0
s canFam3.chr3               59922755 5 -  91889043 CGGTT
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e cebCap1.NW_016107707v1       281103 165 -   2086007 I
e nomLeu3.chr6               70920259 364 + 121039945 M
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=9412.000000
s hg38.chr15_KI270851v1_alt    138243 4 +    263054 gtgc-----
s panTro5.chr15               9395297 4 +  83230942 gtgc-----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016276 4 -  99763055 gtgc-----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64719 4 -    281578 TTGC-----
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164223334 4 - 169600520 AGGC-----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542815 4 - 171882078 AGGC-----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       384329 4 +   2379783 AGGC-----
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       360179 4 +   4116138 AGGC-----
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53791644 4 +  58131712 AGGC-----
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       356252 4 -   3636681 GTGC-----
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       386028 4 -   4457520 AGGC-----
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55200383 4 + 190850796 gtgc-----
i calJac3.chr3              C 0 I 3
s proCoq1.NW_012148396v1     13421651 4 +  16154928 gtgc-----
i proCoq1.NW_012148396v1    N 0 C 0
s canFam3.chr3               59922760 8 -  91889043 -GGCCCTGC
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e cebCap1.NW_016107707v1       281103 165 -   2086007 I
e nomLeu3.chr6               70920259 364 + 121039945 M
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=148412.000000
s hg38.chr15_KI270851v1_alt    138247 19 +    263054 gtgcgt--------gcggcgGAAATCC
s panTro5.chr15               9395301 19 +  83230942 gtgcgt--------gcggcgGAAATCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016280 19 -  99763055 gtgcgt--------gcggcgGAAATCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64723 27 -    281578 GTGCGTTGCGTGCGGCGGCGGAAATCC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164223338 19 - 169600520 ATGCGT--------CCGGCGGAAATCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542819 19 - 171882078 ATGCGT--------CCGGCGGAAATCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       384333 19 +   2379783 ATGCGT--------CCGGCGGAAATCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       360183 19 +   4116138 ATGCGT--------CCGGCGGAAATCC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53791648 19 +  58131712 ATGCGT--------CCGGCGGAAATCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       356256 19 -   3636681 GTGCGT--------GCGGCGGAAGTCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       386032 19 -   4457520 ATGCGT--------CCGGCGGAAATCC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55200390 19 + 190850796 gtgcgt--------gcgGCGGAAATCC
i calJac3.chr3              I 3 C 0
s cebCap1.NW_016107707v1       281268 19 -   2086007 gtgcgt--------gcgGCGGAAATCC
i cebCap1.NW_016107707v1    I 165 C 0
s proCoq1.NW_012148396v1     13421655 19 +  16154928 gtgcat--------gcggcgGAAGTCC
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59922768 18 -  91889043 CCGCG---------GCGGCGGAAGTCC
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e nomLeu3.chr6               70920259 364 + 121039945 M
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=392408.000000
s hg38.chr15_KI270851v1_alt    138266 51 +    263054 CGCCTTCC-GGCGCCCGCTGTTGGCCTTGGCCGC-AGCCAGGGCGCTCCAAGT
s panTro5.chr15               9395320 51 +  83230942 CGCCTTCC-GGCGCCCGCTGTTGGCCTTGGCCGC-AGCCAGGGTGCTCCAAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016299 51 -  99763055 CGCCTTCC-GGTGCCCGCTGTTGGCCTTGGCCGC-AGCCAGGGCGCTCCAAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64750 51 -    281578 CGCCTTCC-GGCGCCCGCTGTTGGCCTTGGCCGC-AGCCATGGCGCTCCAAGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70920623 51 + 121039945 CGCCTTCC-GGCGCCCGCTGTTGGCCTTGGCCGC-AGCCAGGGCCCTCCAAGT
i nomLeu3.chr6              M 364 C 0
s rheMac8.chr7              164223357 51 - 169600520 CGCCTTCC-GGCGCCCGCGGTTGGCCCTGGCCGC-AGCCGGGTCGCTCCAAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542838 51 - 171882078 CGCCTTCC-GGCGCCCGCGGTTGGCCCTGGCCGC-AGCCGGGTCGCTCCAAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       384352 48 +   2379783 --GCTTCC-GGCGCCCGC-GTTGGCCCTGGCCGC-AGCCGGGCGTCTCCAAGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       360202 51 +   4116138 CGCCTTCC-GGCGGCCGCGGTTGGCCCTGGCCGC-AGCCGGGGCGCTCCAAGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53791667 51 +  58131712 CGCCTTCC-GGCGGCCGCGGTTGGCCCTGGCCGC-AGCCGCGGCGCTCCAAGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       356275 51 -   3636681 CGCCTTCC-GGAGCCTGCGGTTGGCCCTGCCCGC-AGCCCGTGAGCTCCGAGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       386051 51 -   4457520 CGCCTTCC-GGCGCCCGCGGTTGGCCCTGGCCGC-AGCCTGGGCGCTCCAAGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55200409 51 + 190850796 CGCCTCTC-GGCTCCCGCGGTTGGCCTTGGCTGC-AGCCGGTGAGTTCCAAGT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       281287 51 -   2086007 CGCCTCCC-GGCTCCCGCGGTTGGCCTTGGCCGC-AGCCCGTGGGTTCCAAGC
i cebCap1.NW_016107707v1    C 0 C 0
s proCoq1.NW_012148396v1     13421674 50 +  16154928 CTCCTTCC-GGCGCCTGCGGTTGGCTCTGGCTGC-AG-CAGGGAACTCCAAGG
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59922786 52 -  91889043 CGCCCCCTAAGCGCCTGCTGTCGGCCCTGCCGGCGAGGGGTGAAACCCTCAG-
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=775705.000000
s hg38.chr15_KI270851v1_alt    138317 79 +    263054 AGGAAGATAAGCGGGATTGCTGGAAGCGGGAGAGTCGGGAGGAGCGGCGAA-GGGCTCCTCTTCCCCATTGGCT---GCGCCC
s panTro5.chr15               9395371 79 +  83230942 AGGAAAATAAGCGGGATTGCTGGAAGCGGGAGAGTCGGGAGGAGCGGCGAA-GGGCTCCTCTTCCCCATTGGCT---TCGCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016350 79 -  99763055 AGGAAGATAAGCGGGATTGCTGGAAGCGGAAGAGTCGGGAGGAGCGGCGAA-GGGCTCCTCTTCCCCATTGGCT---GCGCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64801 79 -    281578 AGGAAGATAAGCGGGATTGCTGGAAGCGGGAGAGTCGGGAGGAGCGGCGAA-GGGCTCCTCTTCCCCATTGGCT---GCGCCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70920674 79 + 121039945 AGGAAGATAAGCGGGATTGCTGGAAGCGGGAGAGTCGGGAGGAGCGGCGAA-GGGCTCTTCTTCCCCATTGGCT---GCGCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164223408 79 - 169600520 AGGAAGATAAGCGGGATTGCAGGAAGCGGGAGAGTCGGGAGGAGACGCGAA-GGGCTCCTCTTCCCCATTGGCT---GCGCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542889 79 - 171882078 AGGAAGATAAGCGGGATTGCAGGAAGCGGGAGAGTCGGGAGGAGACGCGAA-GGGCTCCTCTTCCCCATTGGCT---GCGCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       384400 81 +   2379783 AGGAAGATAAGGCGGATTGCAGGAAGCGGGAGAGTCGGGAGGAGACGCGAA--GGCTCCTCTTTCCCATTGGCTGACGCTCCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       360253 79 +   4116138 AGGAAGATAAGCGGGATTGCAGGAAGCGGGAGAGTCGGGAGGAGACGCGAA-GGGCTCCTCTTCCCCATTGGCT---GCGCCC
i cerAty1.NW_012001462v1    C 0 T 41319
s chlSab2.chr26              53791718 79 +  58131712 AGGAAGATAAGCGGGATTGCAGGAAGCGGGAGAGTCGGGAGGAGTCGCGAA-GGGTTCCTCTTCCCCATTGGCT---GCGCCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       356326 79 -   3636681 AGGAAGACAAACCGGATTGCCGGAAGCGGGAGAGTCCGGACAAGCGGCGAA-GGGCTCCTGTTCCCAGTCGGCT---GCGCCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       386102 79 -   4457520 AGGAAGATAAGCGGGATTGCAGGAAGCGGGAGAGTCGGGAGGAGACGCGAA-GGGCTCCTCTTCCCCATTGGCT---GCGCCC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55200460 77 + 190850796 AGGAAGATGAGCGGGACTGCGGGAAGCCG--GGATCGGGAGGAGCGGCGAA-GGGCTCCTCTTCCCCATTGGCT---GCGCCC
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       281338 77 -   2086007 AGGAAGATGAGCGGGGCTGCAGGAAGCGG--GGATCGGGAGCAGCGGCGAA-GGGCTCCTCTTCCCCATTGGCT---GCGCCC
i cebCap1.NW_016107707v1    C 0 C 0
s micMur3.chr9              116193554 80 + 116334831 AGGAAGAAGAGCGGGATTGTAGGAAGCTGGAGAGTCAAGAGGGGCGACTAAGGGGCTCCTCTTCCCCATTGGCT---GTGACC
i micMur3.chr9              N 0 C 0
s proCoq1.NW_012148396v1     13421724 80 +  16154928 AGGAAGAAGAGCGGGATTGTAGGAAGCTGGAGAGTCGAGAGGAGCGACGAAGGGGCTCCTCTTCCCCATTGGCT---GTGACT
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59922838 80 -  91889043 AGGAAGATGGGCCGGATTgaaggaaggaggcggggaggggggaagggcgagagggaTCCTCTTCCCCATTGGCT---GTCCCG
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=109353.000000
s hg38.chr15_KI270851v1_alt    138396 11 +    263054 ACGGAGC-AGCC
s panTro5.chr15               9395450 11 +  83230942 ACGGAGC-AGCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016429 11 -  99763055 ACGGAGC-AGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64880 11 -    281578 ACGGAGC-AGCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70920753 11 + 121039945 GCGGAGC-AGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164223487 11 - 169600520 GCGGAGC-AGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542968 11 - 171882078 GCGGAGC-AGCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       384481 12 +   2379783 GCGAGCCAAGCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       319013 11 +   4116138 GCGGAGC-CGCC
i cerAty1.NW_012001462v1    T 41319 C 0
s chlSab2.chr26              53791797 11 +  58131712 GCGGAGC-AGCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       356405 11 -   3636681 GCGGAGC-CGCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       386181 11 -   4457520 GCGGAGC-AGCC
i colAng1.NW_012115278v1    C 0 M 298
s calJac3.chr3               55200537 11 + 190850796 TCGGAGC-AGCC
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       281415 11 -   2086007 GCGGAGC-AGCC
i cebCap1.NW_016107707v1    C 0 C 0
s micMur3.chr9              116193634 11 + 116334831 GCGGAGC-TGCC
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13421804 11 +  16154928 GCGGAGC-TGCC
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59922918 11 -  91889043 GTGGAGC-AGCC
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=198461.000000
s hg38.chr15_KI270851v1_alt    138407 26 +    263054 T--CGTTGCG--ATTGGCCGTACGCG-GGGG
s panTro5.chr15               9395461 26 +  83230942 T--CGTTGCG--ATTGGCCGTACGCG-GGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016440 26 -  99763055 T--CGTTGCG--ATTGGCCGTACGCG-GGGG
i panPan2.chr15             C 0 I 20
s gorGor5.CYUI01000141v1        64891 26 -    281578 T--CGTTGCG--ATTGGCCGTACGCG-GGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70920764 26 + 121039945 T--CGTTGCG--ATTGGCCGTACGTG-GGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164223498 26 - 169600520 T--CGTTGCG--ATTGGCCGTACGCG-GGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165542979 26 - 171882078 T--CGTTGCG--ATTGGCCGTACGCG-GGGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       384493 30 +   2379783 TTACGTTGCGCAATTGGCCGTAACGC-GGGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       319024 25 +   4116138 T--CGTTGCC--GTTGGCCGTAAGC--GGGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53791808 26 +  58131712 T--CGTTGCG--ATTGGCCGTACGCG-GGGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       356416 26 -   3636681 T--CATTGCC--GTTGGCCGTAAGCG-GGGG
i manLeu1.NW_012102332v1    C 0 I 52052
s calJac3.chr3               55200548 26 + 190850796 T--CGCTGCG--ATTGGCCGTACGCG-GGGG
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       281426 26 -   2086007 T--CGCTGCG--ATTGGCCGTACGCG-GGGG
i cebCap1.NW_016107707v1    C 0 C 0
s micMur3.chr9              116193645 27 + 116334831 T--CGCTGTG--ATTGGCTGGGCTCCAGGGG
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13421815 26 +  16154928 T--CGCTGCG--ATTGGCTGGGCTCC-GGGG
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59922929 26 -  91889043 T--CGCTGTG--ATTGGCTGGCCGTC-AGGG
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e colAng1.NW_012115278v1       386192 298 -   4457520 M
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=993344.000000
s hg38.chr15_KI270851v1_alt    138433 167 +    263054 GCGGCAGTCCCGCGTCGGCCCGCCCCTCGGGCCGCGAGAGGCGCCGGGATC-GC---GGGCGCCGGCTGAGCCAGCGGCTCTTG-GGAGGCTGCGTCCGCGCGCCGGCGGGGCGAGGCGGCCGGGCC-CTGCGCGTCAGGTCCT--GGCCTGGGG--CACCTGGGCGGCCG-GTGGCG
s panTro5.chr15               9395487 167 +  83230942 GCGGCAGTCCCGCGTCGGCCCGCCCCTCGGGCCGCTAGAGGCGCCGGGATC-GC---GGGCGCCGGCTGAGCCGGCGGCTCCTG-GGAGGCTGCGTCCGCGCGCCGGCGGGGCGAGGCGGCCTGGCC-CTGCGCGTCAGGTCCT--GGCCTGGGG--CACCTGGGCGGCCG-GTGGCG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        64917 167 -    281578 GCGGCAGTCCCGCGTCGGCCCGCCCCTCGGGCCGCGAGAGGCGCCGGGATC-GC---GGGCGCCGGCTGAGCCAGCGGCTCTTG-GGAGGCTGCGTCCGCGCGCCGGCGGGGCGAGGCGGCCGGGCC-CTGCGCGTCAGGTCCT--GGCCTGGGG--CACCTGGGCggccg-gtggcg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70920790 167 + 121039945 GCGGCAGTCCGGCGTGGGCCCGCCCCTAGGTCCGCGAGAGTCGCCGTGATC-GC---GGGAGCCGGCTGAGCCAGCGGCTCCTG-GGAGGTTGTGTTCGGACGCCGGCGGGGCGAGGCGGTCGGGCC-CTGCGCGTCAGGTCCT--GGCCTGGGG--CACAGGGGCGGGCG-GTGGCG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164223524 167 - 169600520 GCGGCAGTCCCGCGTCAGCCCGCCCCTCGGGCCGCGAGAGGCGCCGGGATC-GC---GGGCGCCGGCTGAGCCAGCGGCTCCTG-GGAGGCTGCGTCCGCGCGCCGGCGGGGCGAGGCGACCGGGCC-CTGCGCGTCAGGTCCT--GGCCTGGGG--CACCggggcggccg-gcggcg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165543005 167 - 171882078 GCGGCAGTCCCGCGTCAGCCCGCCCCTCGGGCCGCGAGAGGCGCCGGGATC-GC---TGGCGCCGGCTGAGCCAGCGGCTCCTG-GGAGGCTGCGTCCGCGCGCCGGCGGGGCGAGGCGACCGGGCC-CTGCGCGTCAGGTCCT--GGCCTGGGG--CACCGGGGCGGCCG-GCGGCG
i macFas5.chr7              C 0 M 100
s macNem1.NW_012011934v1       384523 168 +   2379783 GCGGCAGTCCCGCGTCAGCCCGCCCCTCGGCCGCCGAGAGGCCGCCGGATCGGC---GGGCGCCGGCTGAGCCAGCGGCTCCTG-GGAGGCTGCGTCCGCGCGCCGGCGGGGCGAGGCGACCGGGCC-CTGCGCGTCAGGTCCT--GGCCTGGGC--TA-CGgggcggccgcgcggag
i macNem1.NW_012011934v1    C 0 I 2
s cerAty1.NW_012001462v1       319049 131 +   4116138 GCGACAGTCC--CATCGGCCAGCGCCTCGGGCTGCGAGTGGCGCCGGGATC-GG---GGGCGTCGGCTCAGCAAGCGGCT-----------------------------------GGCGTCCGCGCC-CTGCGCGTCAGGTCCT--GGCCTGGGG--CACCGGGGCGGCAG-GTGGCG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53791834 167 +  58131712 GCGGCAGTCCCGCGTCAGCCCGCCCCTCGGGCCGCGAGAGGCGCCGGGATC-GC---GGGCGCCGGCTGAGCCAGCGGCTCCTG-GGAGGCTGCGTCCGCGCGCCGGCAGGGCGAGGCGACCGGGCC-CTGCGCGTCAGGTGCT--GGCCTAGGG--CACCGGGGCGGCAG-GCGGCG
i chlSab2.chr26             C 0 C 0
s calJac3.chr3               55200574 167 + 190850796 GCGGCAGTCCCGCCTCGGCCCGCCCCTCGGGCCGCTAGAGGCGCCGGGATC-GC---GGGCGCCGGCTGAGCCAGCGGCGGCCGCGGAGGCTGTGTCCGCACGCCGGCGCGGTGAGGCG-GCGGGCC-CTGCGCGTCAGGTCCT--ggtcgggag--cagcgggtcggccg-gcggcg
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       281452 167 -   2086007 GCGGCAGTCCCGCGTCGGCCCGCCCCTCGGGCCGCTAGAGGCGCCGGGATC-GC---GGGCGCCGGCTGAGCCAGCGGCGGCCG-GGAGGCTGTCTCCGCACGCCGGCGGGGCGAGGCGCCCGGGCC-CTGCGCGTCAGGTCCT--GCTcggggg--cagcgggtcggccg-gcggcg
i cebCap1.NW_016107707v1    C 0 C 0
s micMur3.chr9              116193672 169 + 116334831 GCGGCAGGCCCGCGTCGGCCCTCCCCACAGGTCGCGAGAGGCGCCGGGATC-GC---GAGCGCCGGCTGAGCCAGCGGTGGCCG-GGAAGCTGTGTCCGCAAGCCGGCAGGGCGAGGCGGCTGGGCTGCTGCGCCTCAGGTCCTC-GTCCCGGGG--CGCAAGGGCGGCCG-GTGGCG
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13421841 169 +  16154928 GCGGCAGGCCCGCGTCGGCCCGCCCCTCGGGTCGCGAGAGGCGCCGGGATC-GC---GAGCGCCGGCTGAGACAGCGGTGGCCG-GGAGGCTGTGTCCTCAAGCTGGCAGGGCGAGGCGGCTGGGCTGCTGCGCCTCAGGTCTTC-GTCCCGGGG--CGCAAGggcggccg-gcggcc
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59922955 172 -  91889043 GCGGTAGTCC-GTGTCGGTCCGCCCCTGGGGTCGCGAGAGATACTGGGATC-CCCAGGGCCGGCGGCGGACCCAGCGGAGGCTC-GGAGGCTCTGTccgcgcgccgcccgccggaggcggcggggcc-TT-CCCGTCAGGTCCTCGTGCCTGGGGATTGCGGGGGCGGCCA-GCCGTG
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e panPan2.chr15              74016466  20 -  99763055 I
e colAng1.NW_012115278v1       386192 298 -   4457520 M
e manLeu1.NW_012102332v1       356442 52052 -   3636681 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=101290.000000
s hg38.chr15_KI270851v1_alt    138600 28 +    263054 GGGGCGGTACGGGCGCGGG------------------GCTGGCGGG
s panTro5.chr15               9395654 28 +  83230942 GGGGCGGTACGGGCGCGGG------------------GCTGGCGGG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        65084 28 -    281578 ggggcggtacgggcgcggg------------------gctggcggg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70920957 28 + 121039945 GGGGCAGTGTGGGCGCGGG------------------GCTGGCGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164223691 28 - 169600520 gaggcggtgcgggcgcggg------------------gctggcggg
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011934v1       384693 26 +   2379783 agtgcggtgcgggcgcgcg------------------g--ggcggg
i macNem1.NW_012011934v1    I 2 C 0
s cerAty1.NW_012001462v1       319180 28 +   4116138 GGGGCGGTGCGGGCGGGGG------------------TTTGGCAGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53792001 28 +  58131712 GGGGCGGTGCCGGCGCGGG------------------GCTGGCGGG
i chlSab2.chr26             C 0 C 0
s calJac3.chr3               55200741 41 + 190850796 ggggtggtgcgggcgcgggcgcgggcgcgggc-----gcgggcggg
i calJac3.chr3              C 0 I 3
s cebCap1.NW_016107707v1       281619 46 -   2086007 ggggaggcgcgggcgcgggcgcgggcgggggcgcggggcgggcggg
i cebCap1.NW_016107707v1    C 0 I 8
s micMur3.chr9              116193841 28 + 116334831 GGGGCGGTGTGAGACTCGG------------------GCCGGGGGG
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13422010 27 +  16154928 ggggcggtgtgagcctcgg------------------gcc-ggggg
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59923127 26 -  91889043 -GGGCGGTGCGGGT-CGGA------------------GCCCGAGCA
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e panPan2.chr15              74016466 20 -  99763055 I
e colAng1.NW_012115278v1       386192 298 -   4457520 M
e manLeu1.NW_012102332v1       356442 52052 -   3636681 I
e saiBol1.JH378292            2359946 86988 +   2682657 T
e macFas5.chr7              165543172 100 - 171882078 M

a score=117510.000000
s hg38.chr15_KI270851v1_alt    138628 18 +    263054 CGGCCGAGC-CCGGGAGGC
s panTro5.chr15               9395682 18 +  83230942 CGGCCGAGC-CCGGGAGGC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        65112 18 -    281578 cggccgagc-ccgggaggc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70920985 18 + 121039945 CGGCCGAAC-CTGGGAGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164223719 18 - 169600520 cggccgagc-ccgggaggc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165543272 18 - 171882078 CGGCCGAGC-CCGGGAGGC
i macFas5.chr7              M 100 C 0
s macNem1.NW_012011934v1       384719 16 +   2379783 cggccga---ccgggaggc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       319208 18 +   4116138 CGGCCGAGC-CGGGGAGGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53792029 18 +  58131712 CGGCCGAGC-CCGGGAGGC
i chlSab2.chr26             C 0 C 0
s calJac3.chr3               55200785 18 + 190850796 cggccgagt-ccgagaggc
i calJac3.chr3              I 3 C 0
s cebCap1.NW_016107707v1       281673 18 -   2086007 cggccgagc-cggaggggc
i cebCap1.NW_016107707v1    I 8 C 0
s micMur3.chr9              116193869 18 + 116334831 CGGCCGAGC-CCGGGCGGC
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13422037 18 +  16154928 cggctgagc-tggggcggc
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59923153 19 -  91889043 CGGCCAAGCAGCGGGCGGC
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       345384 839 +   3831555 I
e panPan2.chr15              74016466 20 -  99763055 I
e colAng1.NW_012115278v1       386192 298 -   4457520 M
e manLeu1.NW_012102332v1       356442 52052 -   3636681 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=38585.000000
s hg38.chr15_KI270851v1_alt    138646 4 +    263054 GGGC
s panTro5.chr15               9395700 4 +  83230942 GGGC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        65130 4 -    281578 gggc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70921003 4 + 121039945 GGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164223737 4 - 169600520 gggc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165543290 4 - 171882078 GGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       384735 4 +   2379783 gggc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       319226 4 +   4116138 GGGC
i cerAty1.NW_012001462v1    C 0 I 41609
s chlSab2.chr26              53792047 4 +  58131712 GGGC
i chlSab2.chr26             C 0 C 0
s calJac3.chr3               55200803 4 + 190850796 gggc
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       281691 4 -   2086007 gggc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       346223 4 +   3831555 GGGC
i aotNan1.NW_018503298v1    I 839 C 0
s micMur3.chr9              116193887 4 + 116334831 GGGT
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13422055 4 +  16154928 gggt
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59923172 4 -  91889043 GGGC
i canFam3.chr3              C 0 C 0
e panPan2.chr15              74016466 20 -  99763055 I
e colAng1.NW_012115278v1       386192 298 -   4457520 M
e manLeu1.NW_012102332v1       356442 52052 -   3636681 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=120006.000000
s hg38.chr15_KI270851v1_alt    138650 15 +    263054 GTGGGCGCGGCGGCC
s panTro5.chr15               9395704 15 +  83230942 GTGGGCGCGGCGGCC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        65134 15 -    281578 gtgggcgcggcggcC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70921007 15 + 121039945 GTGGGCGAGGCGGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164223741 15 - 169600520 gtgggcgcggcggcT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165543294 15 - 171882078 GTGGGCGCGGCGGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       384739 13 +   2379783 gt-ggcgc-gcggCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       360839 15 +   4116138 GTGGGCGCGGCGGCT
i cerAty1.NW_012001462v1    I 41609 C 0
s chlSab2.chr26              53792051 15 +  58131712 GTGGGCGCGGCGGCT
i chlSab2.chr26             C 0 C 0
s calJac3.chr3               55200807 15 + 190850796 gtgggcgcggcggcc
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       281695 15 -   2086007 gtgggcgcggCGGCC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       346227 15 +   3831555 GTGGGCGCGGCGGCC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116193891 15 + 116334831 GTTGGCGCGGCGGCC
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13422059 15 +  16154928 gttggcgcggcggcC
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59923176 15 -  91889043 GTTGGTGCGGCCGCC
i canFam3.chr3              C 0 C 0
e panPan2.chr15              74016466 20 -  99763055 I
e colAng1.NW_012115278v1       386192 298 -   4457520 M
e manLeu1.NW_012102332v1       356442 52052 -   3636681 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=350155.000000
s hg38.chr15_KI270851v1_alt    138665 36 +    263054 GCACCGGGGCCTGCGCGGAC-CACCCGCGGGGCA-GCC
s panTro5.chr15               9395719 36 +  83230942 GCACCGGGGCCTGCGCGGAC-CACCCGCGGGGCA-GCC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        65149 36 -    281578 GCACCGGGGCCTGCTCGGAC-CACCCGCGGGGCA-GCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70921022 36 + 121039945 GCACCGGGGCCTGCGCGGAC-CGCCCGCGGCGCA-GCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164223756 36 - 169600520 GCACCGGGGCCTGCGCGGAC-CGCCCGCGGCGCA-GCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165543309 36 - 171882078 GCACCGGGGCCTGCGCGGAC-CGCCCGCGGCGCA-GCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       384752 37 +   2379783 GCACCGGGGCCTGCGCGGACGCGCCCGCGGCGCA-GCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       360854 36 +   4116138 GCACCGGGGCCTGCGCGGAC-CGCCCGCGGCGCA-GCC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53792066 36 +  58131712 GCACCGGGGCCTGCGCGGAC-CGCCCGCGGCGCA-GCC
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115278v1       386490 36 -   4457520 GCACCGGGGCCTGCGCGGAC-CGCCCGCGGCGCA-GCC
i colAng1.NW_012115278v1    M 298 C 0
s calJac3.chr3               55200822 36 + 190850796 gcaccggggCCTGCGCGGAC-CGCCCGCGGCGCA-GCC
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       281710 34 -   2086007 GCACCGGGGCCTGCGCGGAC-CGCCCGCGGCGCA-G--
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       346242 36 +   3831555 GCACTGGGGCCTGCGCGGAC-CGCCCGCGGCGCA-GCC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116193906 36 + 116334831 GGACCTGGGCCTGCGCGGAC-CGCCCGCGGCGCG-ATC
i micMur3.chr9              C 0 I 1
s proCoq1.NW_012148396v1     13422074 36 +  16154928 GGACCTGGGCCTGCGCGGAC-CGCCCGCGGCGCG-ATC
i proCoq1.NW_012148396v1    C 0 I 1
s canFam3.chr3               59923191 37 -  91889043 GGACCTGGGCCTGCGCGGAT-CGCCCGCGCCGCGCGTC
i canFam3.chr3              C 0 C 0
e panPan2.chr15              74016466 20 -  99763055 I
e manLeu1.NW_012102332v1       356442 52052 -   3636681 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=1113764.000000
s hg38.chr15_KI270851v1_alt    138701 134 +    263054 TCGGGCC-TCTCTCCATCTCTTAAGTGGTGGTGGCTGTGGGTTTTTCTGCAGGCGATCCTTTTGAGTAATTTGTTTCACGCA-CGCGCCCTGCTGTGG-GGTAAAGCGGCAGATTCATGCTGCTGTCATTTGTCGTT
s panTro5.chr15               9395755 134 +  83230942 TCGGGCC-TCTCTCCATCTCTTAAGTGGTGGTGGCTGTGGGTTTTTCTGCAGGCGATCCTTTTGAGTAATTTGTTTCACGCA-CGCGCCCTGCTGTGG-GGTAAAGCGGCAGATTCGTGCTGCTTTCATTTGTCGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016486 134 -  99763055 TCGGGCC-TCTCTCCATCTCTTAAGTGGTGGTGGCTGTGGGTTTTTCTGCAGGCGATCCTTTTGAGTAATTTGTTTCACGCA-CGCGCCCTGCTGTGG-GGTAAAGCGGCAGATTCATGCTGCTGTCATTTGTCGTT
i panPan2.chr15             I 20 I 1
s gorGor5.CYUI01000141v1        65185 134 -    281578 TCGGGCC-TCTCTCCATCTCTTAAGTGGTGGTGGCTGTGGGTTTTTCTGCAGGCGATCCTTTTGAGTAATTTGTTTCACGCA-CGCACCCTGCTGTGG-GGTAAAGCGGCAGACTCATGCTGCTGTCATTTGTCGTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70921058 134 + 121039945 TCGGGCC-TCTCTCCATTTCTTAAGTGGTGGTGGCTGTGGGTTTTTCTGCAGGCCGTCGTGTTGAGTAATTTGTTTCACGCA-CGCGCCCTGCTGTGG-GGTAAAGCGGCAGATTCATGCTGCTGTCACTTGTCGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164223792 132 - 169600520 TCGGGCC-TCTCTCCA-ATC-TAAGTGGTGGTGGCTGTGGGTTTTTCTGCAGGCGATCCTTTTGAGTAATTTGTTTCACGCA-CGCGCCCTGCTGTGG-GGTAAAGCGGCAGATTCATGCTGCTGTCATTTGTCTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165543345 132 - 171882078 TGGGGCC-TCTCTCCA-ATC-TAAGTGGTGGTGGCTGTGGGTTTTTCTGCAGGCGATCCTTTTGAGTAATTTGTTTCACGCA-CGCGCCCTGCTGTGG-GGTAAAGCGGCAGATTCATGCTGCTGTCATTTGTCTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       384789 129 +   2379783 T-CGGCC-TCTCTCCATCTC-TAAGTGGTGGTGGC--TGGGTTTTTCTGCAGGCGATCC-TTTGAGTAATTTGTTTCACGCA--GCGCCCTGCTGTGGAGGTAAAGCGGCAGATTCATGCTGCTGTCATTTGTCTTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       360890 133 +   4116138 TCGGGCC-TCTCTCCGTGTC-TAAGTGGTGGTGGCTGTGGGGTTTTCTGCAGGCGATCCTTTTGAGTAATTTGTTTCACGCA-CGCGCCCTGCTGTGG-GGTAAAGCGGCAGATTCATGCTGCTGTCATTTGTCTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53792102 133 +  58131712 TCGGGCC-TCTCTCCATCTC-TAAGTGGTGGTGGCTGTGGGTTTTTCTGCAGGCGATCCTTTTGAGTAATTTGTTTCACGCA-CGAGCCCTGCTGTGG-GGTAAGGCGGCAGATTCATGCTGCTGTCATTTGTCTTT
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115278v1       386526 131 -   4457520 TCGGGC---CTCTCCATCTC-TAAGTGGTGGTGGCTGTGGGTTTTTCTGCAGGCGATCTTTTTAAGCAGTTTGTTTCACGCA-CGCGCCCCGCTGTGG-GGTAAAGCGGCAGATTCATGCTGCTGTCATTTGTCTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55200858 132 + 190850796 TCGGGCC-TCTCTCCATCTC-GTAGTGGTGGTGGCTGTGGGTGTTT-CGCAGGCGATTCTTCTGAATCATTTGTTTCACTCA-CTCGCCCTACTGTGG-GGCAGAGCGGCAGATGTATGCCGCTGTCATTTGTCGTG
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       281744 114 -   2086007 -----------------CTC-TTGGTGCTGGTGGCCGCGGGTGTTTCCGCAGGCGATCCTCCGG--TCGTTTGTTGCACTCC-CCCGCCCTGCTGTGG-GGCACAGC-GCAGATGCGTGGCGCTGTCACTTGTCGTG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       346278 133 +   3831555 TCGGGCC-TCTCTCCATCTC-TTAGCGGTGGTGGCTGTGGGTGTTTCCGCAGGCGATCTTTCTGAATCATTTGTTTCACTCA-CCAGCCCTGCTGTGG-GGCAAAGCGGCAGATGCGTGCCGCTGTCATTTGTCGTC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116193943 134 + 116334831 CCGGCTG-TCTTTCCATTTC-TAAGTGATTATTGTTGTGGGTTTTTCTGCTGACGTGACTTTTGATTAATTTGTTTCACGCACCACGCACTGGTCTAG-GGTAAAGCGGCAGGTGCATGCTGGTGTCATTTGTCGTT
i micMur3.chr9              I 1 C 0
s proCoq1.NW_012148396v1     13422111 134 +  16154928 ACGGCTG-TCTTTCCATTTC-TAAGTGATTATTGTTGTGGGTTTTTCTGCTGACGTGACTTGTGATTAATTTGTTTCACGCACCACACACTGGTCTAG-GGTAAAGCGGCAGGTGCATGCCGGTGTCATTTGTCGTT
i proCoq1.NW_012148396v1    I 1 C 0
s canFam3.chr3               59923228 133 -  91889043 TCGGGCTGTGTTTCCATTTC-GGAGTCATTATTGTTTTGGATTTTTCCGCAGATGTGACTTTTGGTGAATTTGTTTCACGCACCACTTGCTGGTACGG-GATAAAGCGGCAGATGCAGGCTACTGTCACTTGTCG--
i canFam3.chr3              C 0 C 0
e manLeu1.NW_012102332v1       356442 52052 -   3636681 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=232695.000000
s hg38.chr15_KI270851v1_alt    138835 31 +    263054 AAAACGATGGG----CTCCCTGTTATGTGTGTGTA
s panTro5.chr15               9395889 31 +  83230942 AAAACGATGGG----CTCCCTGTTGTGTGTGTGTA
i panTro5.chr15             C 0 I 22498
s panPan2.chr15              74016621 29 -  99763055 AAAACGATGGG----CTCCCTGTTGTGTGTGTA--
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01000141v1        65319 31 -    281578 AAAACGATGGG----CTCCCTGTTATGTGTGTGTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70921192 31 + 121039945 AAAACGATGGG----CTCCCTGTCCTGTGTGTGTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164223924 31 - 169600520 AAAACGATGGG----CCTCCTGTCGGGTGTGTGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165543477 31 - 171882078 AAAACGATGGG----CCTCCTGTCGGGTGTGTGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       384918 31 +   2379783 AAAACGATGGG----CCTCCTGTCGGGTGTGTGTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       361023 31 +   4116138 AAAACGATGGG----CTTCCTGTCGGGTGTGTGTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53792235 31 +  58131712 AAAACGATGGG----CTTCCTGTCGGGTGTGTGTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       408494 31 -   3636681 AAAACGATGGG----CCTCCTGTCGGGTGTGTGTG
i manLeu1.NW_012102332v1    I 52052 C 0
s colAng1.NW_012115278v1       386657 31 -   4457520 GAAACGATGGG----CTTCCTGTCGTGTGTGTGTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55200990 25 + 190850796 AAAACGAGGGG----CTTCCTGTCGTGTT------
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       281858 25 -   2086007 ACACCGAGGGG----CTGCCTGTCGTGTT------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       346411 25 +   3831555 AAAACGAGGGG----CTTCCTGTCGTGTT------
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116194077 35 + 116334831 GAAATGATGGGCTTCCTTCCTGTCTTCTGTTTGTG
i micMur3.chr9              C 0 I 6
s proCoq1.NW_012148396v1     13422245 31 +  16154928 GAAATGATGGG----CTTCCTGTCTTCTGTTTGTG
i proCoq1.NW_012148396v1    C 0 I 6
s canFam3.chr3               59923361 21 -  91889043 --GGCTGTGGG----CGTCC------GTGTGTG--
i canFam3.chr3              C 0 C 0
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=1481263.000000
s hg38.chr15_KI270851v1_alt    138866 142 +    263054 CTTCTTGGATTTGAGGGCAGGGGGATGACATTGTAACTTGGCTTCCTGTGACCGTCCATTCTCAAGGTCTC----GTCAGCGTGGTGCAGAAACTCGGC--------ACACCCTGCCTACCTTGGA---AGGAGGCTTTCCCTTCCCCACctccctc
s panTro5.chr15              73712958 142 -  83230942 CTTCTTGGATTTGAGGGCAGGGGGATGACATTGTGACTTGGCTTCCTGTGACCGTCCATTCTCAAGGTCTC----GTCAGCGTGGTGCAGAAACTCGGC--------ACACCCTGCCTACCTTGGA---AGGAGGCTTTCCCTTCCCCACCTCCCTC
i panTro5.chr15             n 22498 C 0
s panPan2.chr15              74016650 142 -  99763055 CTTCTTGGATTTGAGGGCAGGGGGATGACATTGTGACTTGGCTTCCTGTGACCGTCCATTCTCAAGGTCTC----GTCAGCGTGGTGCAGAAACTCGGC--------ACACCCTGCCTACCTTGGA---AGGAGGCTTTCCCTTCCCCACCTCCCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        65350 142 -    281578 CTTCTTGGATTTGAGGGCAGGGGGATGACATTGTGACTTGGCTTCCTGTGACCGTCCATTCTCAAGGTCTC----GTCAGCGTGGTGCAGAAACTCGGC--------ACACCCTGCCTACCTTGGA---AGGAGGCTTTCCCTTCCCCACctccctc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70921223 142 + 121039945 CCTTTTGGATTTGAGGGAAGGGGGATGACATTGTGACTTGGCTTCCTGTGACCGTCCATTCTCAAGGTCTC----GTCAGCGTGGTGCAGAAACACGGC--------ACACCCTGCCTGCCCTGGA---AGGAGGCTTTCCCTTCCCCACTtccctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164223955 142 - 169600520 CCTTTTGGATTTGAGGGCAGGGGGATGACATTGTGACTTGGCCTCCTCTGACCGTCCATTTTCAAGGTCTC----GCCAGTGTAGTGCAGAAACTCGGC--------ACACCCTGCCTACCTTGGA---AGGAGGCTTTCCCTTCCCCACctccctc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165543508 142 - 171882078 CCTTTTGGATTTGAGGGCAGGGGGATGACATTGTGACTTGGCCTCCTCTGACCGTCCATTCTCAAGGTCTC----GCCAGCGTAGTGCAGAAACTCGGC--------ACACCCTGCCTACCTTGGA---AGGAGGCTTTCCCTTCCCCACctccctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       384949 138 +   2379783 CCTTTTGGATTTGAGG--CAGGGGATGACATTGTGACTTGCCCCTCTCTGACCGTCCATTCTCAA-GTCTC----GCCAGTGTGGTGCAGAAACTC-GC--------ACACCCTGCCTACCTTGGA---AGGAGGCTttcccttccccacctccctc
i macNem1.NW_012011934v1    C 0 I 182
s cerAty1.NW_012001462v1       361054 142 +   4116138 CCTTTTGGATTTGAGGGCAGGGGGATGACATTGTGACTTGGCCTCCTGTGACCGTCCATTCTCAAGGTCTC----GCCAGCGTAGTGCAGAAACTCGGC--------ACACTCTGCCTACCTTGGA---AGGAGGCTTTCCCTTCCTCCCctccctc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53792266 146 +  58131712 CCTTTTGGATTTGAGGGCAGGGGGATGACATTGTGACTTGGCCTCCTCTGACCGTCCATTCTCAAGGTCTCGCCAGCCAGCGTAGTGCAGAAACTCGGC--------ACACCCTGCCTACCTTGGA---AGGAGGCTTTCCCTTCCCCACctcactc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       408525 142 -   3636681 CCTTTTGGATTTGAGGGCAGGGGGATGACATTGTGACTTGGCCTCCTCTGACCGTCCATTCTCAAGGTCTC----GCCAGCGTAGTGCAGAAACTCGGC--------ACACCCTGCCTACCTTGGA---AGGAGGCTTTCCCTTCCCCACctccctc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       386688 142 -   4457520 CCTTTTGGATTTGAGGGCAGGGGGATGACATTGTGACTTGGCCTCCTGTGACCGTCCATTCTCAAGGTCTC----GCCAGCGTAGTGCAGAAACTCGGC--------ACACCCTGCCTACCTTGGA---AGGAGGCTTTCCCTTCCCCACctccctc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55201015 138 + 190850796 CTTTTTGGATGTGAGGGCAGGGGGATGACATTGTGATTTGGCCTCCTGTGACCGTCCATTCTCAAGGTCTC----GCCTGCGTGGTGCAGAAACCCGGC--------ACGCCCTGCCTACCTTGGA---AGGAGGCTTtcccttcgcctcccc----
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       281883 132 -   2086007 CCTTCTGGATGTGAGGGCAGGGGGATGACATGGTGATTCGGCCTCCCGTGACCGTCCGCTCTCAAGGTCTC----GCCGGCGTGGTGCAG-AGCCCGGC--------GCGCCCCGCCTGCCTTGGA---GGGAGGCTTT-CCTTGGCCT--------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       346436 138 +   3831555 CCTTTTGGATTTGAGGGCAGGGGGATGACATTGTGATTTGGCCTCCTGTGACCGTCCATTCTCAAGGTCTC----GCCGGCGTGGTGCAGAAACCCGGC--------ACGCCCTGCCTACCTTGGA---AGGAGGCTTTCCCTTCGCCTCCAC----
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116194118 135 + 116334831 CCTTTTGGATTTAAAGGAAAGGGGATGACATTGTGATTTGGTCTCCAATGACCGTCTATTCTCAAGGTCTT----TTCAACGTGGTACACAAACTGGGC--------GAACCCTATCTATGTTGAA---AGTAGGCTTTTCCTTCCTCCC-------
i micMur3.chr9              I 6 C 0
s proCoq1.NW_012148396v1     13422282 135 +  16154928 CGTTTTGGATTTAAGGGAAAGGGGATGACATTGTGATTTGGCCTCCAAGGACCGACTATTCTCAAGGTCTC----GCCAACGTGGTACAGAAACTAGGC--------GAACCCTACCTATATTGAA---AGTAGGCTtttccttcctccc-------
i proCoq1.NW_012148396v1    I 6 C 0
s canFam3.chr3               59923382 139 -  91889043 ------------GAAGGGACGGGG-TGACATTGTGGCTGGGGCTCCCGTGCCGGTTCATGCG-AGGGCCTC----GCCCACACAGTGCAGGCGCCCGGCGAGTCCCGGTGCCCCACCTGTGCTGGCCCTAGTCTGCTGCCTCCTCCCCGCGTCCCTC
i canFam3.chr3              C 0 C 0
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=18108.000000
s hg38.chr15_KI270851v1_alt    139008 3 +    263054 tct
s panTro5.chr15              73713100 3 -  83230942 TCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016792 3 -  99763055 TCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        65492 3 -    281578 tct
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70921365 3 + 121039945 tcc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164224097 2 - 169600520 -cc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165543650 2 - 171882078 -cc
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       361196 2 +   4116138 -cc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53792412 2 +  58131712 -cc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       408667 2 -   3636681 -cc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       386830 2 -   4457520 -cc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55201153 3 + 190850796 tcc
i calJac3.chr3              C 0 C 0
s aotNan1.NW_018503298v1       346574 3 +   3831555 TCC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116194253 3 + 116334831 TCT
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13422417 3 +  16154928 tct
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59923521 3 -  91889043 GCC
i canFam3.chr3              C 0 C 0
e cebCap1.NW_016107707v1       282015 0 -   2086007 C
e macNem1.NW_012011934v1       385087 182 +   2379783 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=86797.000000
s hg38.chr15_KI270851v1_alt    139011 8 +    263054 ctccatct
s panTro5.chr15              73713103 8 -  83230942 CTCCATCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016795 8 -  99763055 CTCCATCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        65495 7 -    281578 ctcc-tct
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70921368 8 + 121039945 ctccatct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164224099 8 - 169600520 ctccatct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165543652 8 - 171882078 ctccatct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       385269 8 +   2379783 ctccatct
i macNem1.NW_012011934v1    I 182 C 0
s cerAty1.NW_012001462v1       361198 8 +   4116138 ctccatct
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53792414 8 +  58131712 ctccatct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       408669 8 -   3636681 ctccatct
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       386832 8 -   4457520 ctccatct
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55201156 8 + 190850796 ctccatct
i calJac3.chr3              C 0 C 0
s aotNan1.NW_018503298v1       346577 8 +   3831555 CTCCATCT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116194256 8 + 116334831 CTCCATCT
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13422420 8 +  16154928 ctccatct
i proCoq1.NW_012148396v1    C 0 I 182
s canFam3.chr3               59923524 8 -  91889043 Gtctctct
i canFam3.chr3              C 0 C 0
e cebCap1.NW_016107707v1       282015 0 -   2086007 C
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=357332.000000
s hg38.chr15_KI270851v1_alt    139019 54 +    263054 cttccctctttccc--tctctccccttctctcccctccaccagctcttctctcccc---
s panTro5.chr15              73713111 44 -  83230942 GTTCCCTCTTTCCC--TCTCTCCCCT----------CCACCAGCTCTTCTCTCCCC---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016803 44 -  99763055 GTTCCCTCTTTCCC--TCTCTCCCCT----------CCACCAGCTCTTCTCTCCCC---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        65502 54 -    281578 cttccctctttccc--tctctccccttctctcccctccaccagctcttctctcccc---
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70921376 56 + 121039945 cttccctctttccccttcactcccctccctactttctccccttcacttctctctcc---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164224107 54 - 169600520 cttccctctttccc--tctctccccttcactcccctcccccagctcttctcttccc---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165543660 54 - 171882078 cttccctctttccc--tctctccccttcactcccctcccccagctcttctcttccc---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       385277 54 +   2379783 cttccctctttccc--tctctccccttcactcccctcccccagctcttctcttccc---
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       361206 54 +   4116138 cttccctctttccc--tctctccccttcactctcctccgccagctcttctcttccc---
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53792422 54 +  58131712 cttccctctttccc--tctctccccttcactcccctcccccagctcttctcttccc---
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       408677 54 -   3636681 cttccctctttccc--tctctccccttcactctcctcccccagctcttctcttccc---
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       386840 54 -   4457520 cttccctctttccc--tctctccccttcactcccctcccccagctcttctcttccc---
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55201164 41 + 190850796 cgtgcctctt----------tcccct-cactcccctccccCAGCTCTTCACT-------
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       282015 29 -   2086007 ----------------------CCCT-CCCTCCCCTCCCGCAGCTCTTCACt-------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       346585 49 +   3831555 CGTGCCTCTTTCCC--TCTCTCCCCT-CACTCCCCTCCCCCAACtcttcact-------
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116194264 53 + 116334831 -TTACCTCTCCCTC--TCTCGTCCTCTCAGTCCCCTCCCCCAACTCTTCTCTCCtt---
i micMur3.chr9              C 0 C 0
s canFam3.chr3               59923532 56 -  91889043 -ctctctctctctt--cctttcttctctcctcccctcccccaccgtctctcttctctcA
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422428 182 +  16154928 I
e saiBol1.JH378292            2359946 86988 +   2682657 T

a score=832459.000000
s hg38.chr15_KI270851v1_alt    139073  99 +    263054 cctttctgttctctctct-------------------ctt----ttttctttT------CTGCATTGAACCTTTCGGGAGTG-TCTTTGTAAACT--------ATTAAAAAGCATTAGGTCTT-CAGCGTATGTGTTT-
s panTro5.chr15              73713155  95 -  83230942 CCTTTCTGTTCTCTCT----------------------TT----TTTCTTTTT------CTGCATTGAACCTTTCGGGAGTG-TCTTTGTAAACT--------ATTAAAA-GCGTTAGGTCTT-CAACGTATGTGTTT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016847  95 -  99763055 CCTTTCTGTTCTCTC-----------------------TT----TTTTCTTTT------CTGCATTGAACCTTTCGGGAGTG-TCTTTGTAAACT--------ATTAAAAAGCGTTAGGTCTT-CAACGTATGTGTTT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        65556  97 -    281578 cctttctgttctctctct--------------------ct----tttttcttt------ctGCATTGAACCTTTC-GGAGTG-TCTTTGTAAACT--------ATTAAAAAGCGTTAGGTCTT-CAACGTGTGTGTTT-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70921432 101 + 121039945 cgtttctgttctctctctct-----------------ctT----TTTCCTTTT------CTGCATTAAACTTTTCGGGAGTG-TCTTTGTAAACT--------ATTAAAAAGCGTTAGGTCTT-CAACATGTATGTTT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164224161  99 - 169600520 cctttctgttttctctctctc-----------------------tTTTTTTTT------CTGCGTTAAACCTTTCGGGAGTG-TCTTTGTAAACT--------ATTAAAAAGAGTTAGGTCTT-CAACATGTATGTTT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165543714 102 - 171882078 cctttctgttttctctctctctct--------------------TTTTTTTTT------CTGCGTTAAACCTTTCGGGAGTG-TCTTTGTAAACT--------ATTAAAAAGAGTTAGGTCTT-CAACATGTATGTTT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       385331 105 +   2379783 cctttctgttttctctctctctct-------------ctc----tTTTTTTTT------CTGCGTTAAACCTTTCGGGAGTG-TCTTTGTAAACT--------ATTAAAAAGAGTTAGGTCTT-CAACATGTATGTTT-
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       361260 118 +   4116138 cctttctgttttctctctctctcttttttttttttttttt----ttttttttt------CTGCGTTAAACCTTTCGGGAGTG-TCTTTGTAAACT--------ATTAAAAAGCGTTAGGTCTT-CAACATGTATGTTT-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53792476 108 +  58131712 cctgtctgttttctctctctctct-------------ctc-tctTTTTTTTTT------CTGCGTTAAACCTTTCGGGAGTG-TCTTTGTAAACT--------ATTAAAAAGAGTTAGGTCTT-CAACATGTATGTTT-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       408731 105 -   3636681 cctttatgttttctctctctctct-------------ctc----tTTTTTTTT------CTGCGTTAAACCTTTCGGGAGTG-TCTTTGTAAACT--------ATTAAAAAGCGTTAGGTCTT-CAACATGTATGTTT-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       386894 108 -   4457520 cct-tctgttttctctctctctct-------------ctctTTTTTTTTTTTT------CTTCATTAAACCTTTCGGGAGTG-TCTTTGTAAACT--------ATTAAAAAGCGTTAGGTCTT-CAACATGTATGTTT-
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55201205  91 + 190850796 --TTTCTGTTCTTTTTTT-------------------TTT----TTT------------CTGCTTTAAACCTTTCGGGAGTG-TCTTTGTAAAAT--------AACAGACAGCGTTAGGTCTT-CAACATTTATGTTT-
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             271180 105 -   2682657 CTTTTCTGGTCTTTTTTT-------------------TTT----TTTTTTTTCCCCCCCCCGCATTTAACTTTTCGGGAGTG-TCTTTGTAAAAT--------AAGCGAAAGCGTTAGGTCTT-CAACATTTATGTTT-
i saiBol1.JH378292          n 86988 C 0
s cebCap1.NW_016107707v1       282044 101 -   2086007 --tttctgttcttttttt-------------------ttt----tttttttttCCCC--CTGCATTAAACCTTTCCGGAGTG-TCTTTGTAAAAT--------AACAGAAAGCGTTAGGTCTT-CAACATTTATGTTT-
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       346634  88 +   3831555 --tttctgttcttttttt-------------------ttc-------------------CTGCATTAAACCTTTCGGGAGTG-TCTTTGTAAAAT--------AACAGAAAGCGTTAGGTGTT-CAACATTTATGTTT-
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116194317 117 + 116334831 --tttctgtttttcatttttctttttctt--------ctt----ttttttttC------CTACATTAAACCTTGTGGGAGGGATCTTTGTAAAATTTTTTTAAAATAAGATGCTTTAGGTCTT-CAATATTTCTGTTT-
i micMur3.chr9              C 0 I 1
s canFam3.chr3               59923588  87 -  91889043 -------------TCCTT-------------------CCC----TTCTTTCTG------CCGCACTAAACCTT-CGGAAGGC-TCTTTGTACCAC--------TCTGAGAAGCTTCAGGTCTTCCAACATGTATGGTTT
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422428 182 +  16154928 I

a score=2616443.000000
s hg38.chr15_KI270851v1_alt    139172 194 +    263054 A-CTTGCAGGCCTGAGACCTGGGAGGAAGCTGGAGAAAAGATGCCCTCTGAATCTTTGTGTTTGGCTGCCCAGGCTCGCCTCGACTCCAAATGGTTGAAAACAGATATACAGGTGGGGTTTGACATGTCTTTTTCTTGGTGTGTTTCTGCTTCCATGTTTAAATTTCTCGTGTAAGGC--TTT-----------------------TTT--TTAGGGTATGT
s panTro5.chr15              73713250 194 -  83230942 AACTTGCAGGCCTGAGACCTGGGAGGAAGCTGGAGAAAAGATGCCCTCTGAATCTTTCTGTTTGGCTGCCCAGGCTCGCCTCGACTCCAAATGGTTGAAAACAGATATACAGGTGGGGTTTGACATGTCTTTTTCTTGATGTGTT-CTGCTTCCATGTTTAAATTTCTCGTGTAAGGC--TTT-----------------------TTT--TTAGGGTATGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74016942 193 -  99763055 A-CTTGCAGGCCTGAGACCTGGGAGGAAGCTGGAGAAAAGATGCCCTCTGAATCTTTCTGTTTGGCTGCCCAGGCTCGCCTCGACTCCAAATGGTTGAAAACAGATATACAGGTGGGGTTTGACATGTCTTTTTCTTGGTGTGTTTCTGCTTCCATGTTTAAATTTCTCGTGTAAGGC---TT-----------------------TTT--TTAGGGTATGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        65653 195 -    281578 A-CTTGCAGGCCTGAGACCTGGGAGGAAGCTGGAGAAAAGATGCCCTCTGAATCTTTCTGTTTGGCTGCCCAGGCTCGCCTCGACTCCAAATGGTTGAAAACAGATATACAGGTGGGGTTTGACATGTCTTTTTCTTGGTGTGTTTCTGCTTCCATGTTTAAATTTCTCGTGTAAGGC-TTTT-----------------------TTT--TTAGGGTATGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70921533 193 + 121039945 A-CTTGCAGGCCTGAGACCTGGGAGGAAGCTGGAGAAAAGATGCCCTCTGAATCTTTCTGTTTGGCTGCCCAGGCTCGCCTTGACTCCAAATGGTTGAAAACAGATATACAGGTGGGGTTTGACATGTCTTTTTCTTGGTGTGTTTCTGCTTCCGTGTTTAAATTTCTCGTGTAAGGC---TT-----------------------TTT--TTAGGGTATGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164224260 193 - 169600520 A-CTTGCAGGCCTGAGAACT-GGAGGACACTGGAGAAAAGATGCCCTCTGACTCTTTCTGTTTGGCTGCCCAGGCTCGCCTTGACTCCAAATGGTTGAAAACAGATATACAGGTGGGGTTTGACATGTCTTTTTCTTAGTGTGTTTCTGCTTCCATGTTTAAATTTCTCGTGTAAGGC--TTT-----------------------TTT--TTAGGGTATGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165543816 193 - 171882078 A-CTTGCAGGCCTGAGAACT-GGAGGAAACTGGAGAAAAGATGCCCTCTGACTCTTTCTGTTTGGCTGCCCAGGCTCGCCTTGACTCCAAATGGTTAAAAACAGATATACAGGTGGGGTTTGACATGTCTTTTTCTTAGTGTGTTTCTGCTTCCATGTTTAAATTTCTCGTGTAAGGC--TTT-----------------------TTT--TTAGGGTATGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       385436 193 +   2379783 A-CTTGCAGGCCTGAGAACT-GGAGGAAACTGGAGAAAAGATGCCCTCTGACTCTTTCTGTTTGGCTGCGCAGGCTCGCCTTGACTCCAAATGGTTGAAAACAGATATACAGGTGGGGTTTGACATGTCTTTTTCTTAGTGTGTTTCTGCTTCCATGTTTAAATTTCTCGTGTAAGGC--TTT-----------------------TTT--TTAGGGTATGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       361378 193 +   4116138 C-CTTGCAGGCCTGAGAACT-GGAGGAAACTGGAGAAAAGATGCCCTCTGACTCTTTCTGTTTGGCTGCCCAGGCTCGCCTTGACTCCAAATGGTTGAAAACAGATATACAGGTGGGGTTTGACATGTCTTTTTCTTGGTGTGTTTCTGCTTCCATGTTTAAATTTCTCGTGTAAGGC--TTT-----------------------TTT--TTAGGGTATGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53792584 195 +  58131712 A-CTTGCAGGCCTGAGAACT-GGAGGAAACTGGAGAAAAGATGCCCTCTGACTCTTTCTGTTTGGCTGCCCAGGCTCGCCTTGACTCCAAATGGTTGAAAACAGATATACAGGTGGGGTTTGACATGTCTTTTTCTTGATGTGTTTCTGCTTCCATGTTTAAATTTCTCGTGTAAGGC--TTT-----------------------TTTTCTTAGGGTATAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       408836 193 -   3636681 A-CTTGCAGGCCTGAGAACT-GGAGGAAACTGGAGAAAAGATGCCCTCTGACTCTTTCTGTTTGGCTGCCCAGGCTCGCCTTGACTCCAAATGGTTGAAAACAGATATACAGGTGGGGTTTGACATGTCTTTTTCTTAGTGTGTTTCTGCTTCCATGTTTAAATTTCTCGTGTAAGGC--TTT-----------------------TTT--TTAGGGTATGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       387002 194 -   4457520 A-CTTGCAGGCCTGAGAACT-GGAGGAAACTGGAGAAAAGATGCCCTCTGACTCTTTCTGTTTGGCTGCCCAGGCTCGCCTTGACTCCAAATGGTTGAAAACAGATATACAGGTGGGGTTTGACATGTCTTTTTGTTGGTGTGTTTCTGCTTCCATGTTTAAATTTCTCGTATAAGGC--TTT-----------------------TTTT-TTAGGGTATGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55201296 217 + 190850796 A-CTTGCAGGGCTGAGAACTGGGAGGAAGCTGGAGAAAAGATGTCTTCTGAGTCTTTCTGTTTGGCTGCCCAGGCTCGCCTTGACTCCAAATGGTTGAAAACAGATATACAGGTGGGGTTTGACATGTCTTTTTCTTGGTGTGCTTCTGCTTCCATATTTAAATTTCTGGTTTAAGGC--TTTAAAAAAATTTTTTAAGGCTTTTTTTT--TTAGGGTATGT
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             271285 214 -   2682657 A-CTTGCAGGGCTGAGAACTGGGAGGAAGCTGGAGAAAAGATGTCTTCTGAGTCTTTCTGTTTGGCTGCCCAGGCTCGCCTTGACTCCAAATGGTTGAAAACAGATATACAGGTGGGGTTTGACATGTCTTTTTTTGGGTCTGTTTCTGCTTCCATATATAAATTTCTGGTTTAAGGC--TTTTTAAAAAATTTTAAG---TCCTTCTT--TTAGGGTATGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       282145 214 -   2086007 A-CTTGCAGGGCTGAGAACTGGGAGGAAGCTGGAGAAAAGATGTCTTCTGAGCCTTTCTGTTTGGCTGCCCAGGCTCGCCTTGACTCCAAATGGTTGAAAACAGATATACAGGTGGGGTTTGACATGTCTGTTTCTTGATCTGTTTCTGCTTCCTTATTTAAATTTCTGGTTTAAGGC--TTTTTAAACTTTTTTAAG---GCTTTTTT--TTAGGGTATGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       346722 209 +   3831555 A-CTTGCAGGGCTGAGAACTGGGAGGAAGCTGGAGAAAAGATGTCTTCTGAGTCTTTCTGTTTGGCTGCCCAGGCTCGCCTTGACTCCAAATGGTTGAAAACAGATATACAGGTGAGGTTTGACATGTCTTTTTCTTGGTGTGTTTCTGCTTCCATATTTAAATTTCTGGTTTAAGGC--TTTTTAAATTTTTTTTAA--------GGT--TTAGGGTATGT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116194435 196 + 116334831 A-CTTGCAGGCCTGGCAACTGGGAAGAAGCTGGAGGAAAGATGCCCTCTGAATCTTTCTGTTTGGTTGCCCAGGCTCGACTTGACTCCAAATGGTTGAAAACAGATATACAGGTGGGGTTTGACATGCCTTTTTCGTGGTGTTTTCTTGCCTCCGTATTTAAATTTCTGGTTTAAGGCTTTTT-----------------------TTT--TTAGGGTTTGT
i micMur3.chr9              I 1 I 14
s proCoq1.NW_012148396v1     13422610 195 +  16154928 A-CTTGCAGGCCTGGCAACTGGGAAGAAGCTGGAGGAAAGATGCCCTCTGAATCTTTCTGTTTGGTTGCCCAGGCTCGACTTGACTCCAAATGGTTGAAAACAGATATACAGGTGGGGTTCGACATGCCTTTTTCCTGGTGTGTTCTTGCCTCCGTATTTAAATTTCTGGTTTAAGGC-TTTT-----------------------TTT--TTAGGGTATGT
i proCoq1.NW_012148396v1    I 182 I 2432
s canFam3.chr3               59923675 192 -  91889043 A-CCTGCAGGACTGACAGCTGGGAGGAACCTGGAGGAAAGATGCCCTCTGATTCTTTCTGTTTGGCTGCCCAGACTCGACTCGATTCCAAATGGTTGAAAACAGACATTCAGGTAGGGTTTGACATGCTTTTTTCTTGGTGTGTTCCTGCCTCCATATTTAAATTTCTGGT-TAAGGC---TT-----------------------TTT--ATGGGATAAGT
i canFam3.chr3              C 0 C 0

a score=1224141.000000
s hg38.chr15_KI270851v1_alt    139366 108 +    263054 AAGGGGAAGTCAGTTGTATCTTGCTGAATTAGAGGAGCAGGTTTATTTCCTGTAACTTAAAATGT-------------------AACAGTCTT-ATGGCTGTTTT--TGTAGATCGTGCGCGGCTGCCTT
s panTro5.chr15              73713444 108 -  83230942 AAAGG-AAGTCAGTTGTATCTTGCTGAATTAGAGGAGCAGGTTTATTTCCTGTAACTTAAAATGT-------------------AACAGTCTTTATGGCTGTTTT--TGTAGATCGTGCGCGGCTGCCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017135 109 -  99763055 AAAGGGAAGTCAGTTGTATCTTGCTGAATTAGAGGAGCAGGTTTATTTCCTGTAACTTAAAATGT-------------------AACAGTCTTTATGGCTGTTTT--TGTAGATCGTGCGCGGCTGCCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        65848 109 -    281578 AAGGGGAAGTCAGTTGTATCTTGCTGAATTAGAGGAGCAGGTTTATTTCCTGTAACTTAAAATGT-------------------AACAGTCTTTATGGCTGTTTT--TGTAGATCGTGCGCGGCTGCCTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70921726 109 + 121039945 AAGGGGAGGTCAGTTGTATCTTGCTGAGTTAGAGGAGCAGGTTTATTTCCTGTAACTTAAAATGT-------------------AACAGTTTTTATGGCTGTTTT--TGTAGATTGTGCACGGCTGCCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164224453 109 - 169600520 AAAGGGAAGTCAGTTGTATCTTGCTGAATTAGAGGAGCAGGTTTGTTTCCTGTAACTTAAAATGT-------------------AACAGTCTTCATGGCTCTTTT--TGTAGGTTGTGCAGGGCTGCCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165544009 109 - 171882078 AAAGGGAAGTCAGTTGTATCTTGCTGAATTAGAGGAGCAGGTTTGTTTCCTGTAACTTAAAATGT-------------------AACAGTCTTCATGGCTCTTTT--TGTAGGTTGTGCAGGGCTGCCTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       385629 109 +   2379783 AAAGGGAAGTCAGTTGTATCTTGCTGAATTAGAGGAGCAGGTTTGTTTCCTGTAACTTAAAATGT-------------------AACAGTCTTCATGGCTCTTTT--TGTAGGTTGTGCAGGGCTGCCTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       361571 109 +   4116138 AAAGGGAAGTCAGTTGTATCTTGCTGAATTAGAGGAGCAGGTTTGTTTCCTGTAACTTAAAATGT-------------------AACAGTCTTCATGGCTCTTTT--TGTAGATTGTGCAGGGCTGCCTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53792779 109 +  58131712 AAAGGGAAGTCAGTTGTATCTTGCTGAATTAGAGTAGCAGGTTTGTTTCCTGTAACTTAAAATGT-------------------AGCAGTCTTCATGGCTCTTTT--TGTAGATTGTGCAGGGCTGCCTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409029 128 -   3636681 AAAGGGAAGTCAGTTGTATCTTGCTGAATTAGAGGAGCAGGTTTGTTTCCTGtaacttaaaatgttacttaaaatgttaacttaaaatgtCTTCATGGCTCTTTT--TGTAGATTGTGCACGGCTGCCTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       387196 109 -   4457520 AAAGGGAAGTCAGTTGTATCTTGCCGAATTAGAGGAGCAGGTTTGTTTCCTGTAACTTAAAATGT-------------------AACAGTCTTCATGGCTCTTTT--TGTAGATTGTGCACCACTGCCTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55201513 109 + 190850796 AAGGGGAAGTCGGTTGTATTTTGCTGTATTAGAGGAGCAGGTTTATTTCCTGTAACTTAAAATGT-------------------AGCAGCCTTTATGGCTGTTTT--TGTAGATTGTGCTTGGCTGCCTT
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             271499 108 -   2682657 AAAGGGCAGTCAGTTGTATCTTGCTACA-TAGAGGAGCAGGTTTATTCCCTGTAACTTAAAATGT-------------------AACAGTCTTTATAGCTGTGTT--TGTAGATTGTGCTTGGCTGCGTT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       282359 109 -   2086007 AAGGGGCAGTCAGTTGTATCTTGCTATATTAGAGGAGCAGGTTTATTTCCTGTAACTTAAAATGT-------------------AACAGTCTTTATAGCTGTTTT--TGTAGATTGTGCTTGGCTGCCTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       346931 109 +   3831555 AAGGGGAAGTCAGTTGTATTTTGCTGTATTAGAGGAGCAGGTTTATTTCCTGTAACTTAAAATGT-------------------AACAGTCTTTATAGCTGTTTT--TGTAGATTGTGCTTGGCTGCCTT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116194645 109 + 116334831 AAAGAGATGTCAATTAGATCTTCCTGTATTAGAGAAGCAGGTTTATTTCCTCCAACTTAAGATGT-------------------AATAATTTTTATGACTATTTT--TGTAGATTGTATATGGCTGCATT
i micMur3.chr9              I 14 C 0
s canFam3.chr3               59923867 109 -  91889043 AACAGGATGCGGATCGGATCTCGC-ATATTAGAGAAGCAGGTTTGTTTCCTATAATTTAAAACG--------------------AACCATTATCATATCAGTTTTTATATAGATTGTGTGTGCCTGCATT
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I

a score=2682865.000000
s hg38.chr15_KI270851v1_alt    139474 268 +    263054 TTAATT--AGTTTCTTGCAAGTGCACGAAACTTGAGATCTATTAA----TAGAGAAAA-TTTTTTTCCTATTTATTATT-ACTGGTTAAGAAATCTGCCACACTCCTAACCATATCATGGTGACTGTTGTTTGTTACTGATCGTTTTTGAGCTGTTGAGTTAACTGTGGAGGGGAAAATTGG-AGAAGTAAGTTGCAG--TAATTATGGCCTATAGAAACTCACTCATTTTATGAGGTCTT-GTGTTTGTGTTTCTGGAGAGACAAGAGTT-AGTTCAGTT
s panTro5.chr15              73713552 260 -  83230942 T-AATT--AGTTTCTTGCAAGTGCACGAAACTTGAGATCTATTAA----TAGGCAA----TTTTTTCCTATTTATTATT-ACTGGTTAAGAAATCTGCCACACTC-TAACCATATCATGGTGACTGTTGTTTGTTACTGATCGTTTT-GAGCTGTTGA-TTAACTGTGGAGGGGAAAATTGGCAGAAGTAAGTTGCAG--TA-TTATGGCCTATAGAAACTCACTCATTTTATGAGGT-TT-GTGTTTGTGTTTCTGGAGAGACAAGAGTT-AGTTCAGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017244 268 -  99763055 TTAATT--AGTTTCTTGCAAGTGCACGAAACTTGAGTTCTATTAA----TAGAGAAAA-TTTTTTTCCTATTTATTATT-ACTGGTTAAGAAATCTGCCACACTCCTAACCATATCATGGTGACTGTTGTTTGTTACTGATCGTTTTTGAGCTGTTGAGTTAACTGTGGAGGGGAAAATTGG-AGAAGTAAGTTGCAG--TAATTATGGCCTATAGAAACTCACTCATTTTATGAGGTCTT-GTGTTTGTGTTTCTGGAGAGACAAGCGTT-AATTCAGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        65957 268 -    281578 TTAATT--AGTTTCTTGCAAGTGCACGAAACTTGAGATCTATTAA----TAGGCAAAA-TTTTTTTCCTATTTATTATT-ACTGGTTAAGAAATCTGCCGCACTCCTAACCGTATCATGGTGACTGTTGTTTGTTACTGATCGTTTTTGAGCTGTTGAGTTAATTGTGGAGGGGAAAATTGG-AGAGGTAAGTTGCAG--TAATTATGGCTTATAGAAACTCACTCATTTTATGAGGTCTT-GTGTTTGTGTTTCTGGAGAGACAAGAGTT-AGTTCAGTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70921835 260 + 121039945 TTAATT--AGTTTCTTGCAAGTGCAGGAAACTTGAGGTCTATTAA----TAGGCAAAA-TTTTTTTCC----TATTATT-ACTGGTTAAGAAATTTGCCACACTCCTAACCATATCATGGTGAC---TGTTTGTTACTGATAGTTTTTGAGCTGTTTAGTTAACTGTGGAGGGGAAAATTGG-AGAAGTAAGTTGCAG--TAATTATGGCGGCTAGAAAGTCACTCATTGTATGAGGTCTT-GTGTTTGTGTTTCTGGAGAGACAAG-GTT-AGTTCAGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164224562 259 - 169600520 TTAATT--AGTTTCTTGCAAGTGCAGGAAACTTGAGATCTATTCA----TAGGCAAAATTTTTTTCCCTATTTATTAGT-AGTGGTTAAGAAA--TGTCACATTCCTAACCATATGATGGTGACTG----TTGTTACTGATAGTTTTTGAGCTGTTTAGTTAACTGTGGAGGGGAAAATTGG-AGAAGTAAGTTGTAG--TAATTATGGCCTTTAGAA----ACCCATTTTATGAGGTCTT-GTGTTTGTGTTTCTAGAGAGATAAGAGTC-AGTTCAGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165544118 259 - 171882078 TTAATT--AGTTTCTTGCAAGTGCAGGAAACTTGAGATCTATTCA----TAGGCAAAATTTTTTTCCCTATTTATTAGT-AGTGGTTAAGAAA--TGTCACATTCCTAACCATATGATGGTGACTG----TTGTTACTGATAGTTTTTGAGCTGTTTAGTTAACTGTGGAGGGGAAAATTGG-AGAAGTAAGTTGTAG--TAATTATGGCCTTTAGAA----ACCCATTTTATGAGGTCTT-GTGTTTGTGTTTCTAGAGAGATAAGAGTC-AGTTCAGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       385738 259 +   2379783 TTAATT--AGTTTCTTGCAAGTGCAGGAAACTTGAGATCTATTCA----TAGGCAAAATTTTTTTTCCTATTTATTAGT-AGTGGTTAAGAAA--TGTCACATTCCTAACCATATGATGGTGACTG----TTGTTACTGATAGTTTTTGAGCTGTTTAGTTAACTGTGGAGGGGAAAATTGG-AGAAGTAAGTTGTAG--TAATTATGGCCTGTAGAA----ACCCATTTTATGAGGTCTT-GTGTTTGTGTTTCTAGAGAGATAAGAGTC-AGTTCAGTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       361680 259 +   4116138 TTAATT--AGTTTCTTGCAAGTGCAGGAAACTTGAGATCTATTCA----TAGGCAAAATTTTTTTTCCTATTTATTAGT-AGTGGTTAAGAAA--TGTCACATTCCTAACCATATGATGGTGACTG----TTGTTACTGATAGTTTTTGAGCTGTTTAGTTAACTGTGGAGGGGAAAATTGG-AGAAGTAAGTTGTAG--TAATTATGGCCTGTAGAA----ACCCATTTTATGAGGTCTT-GCGTTTGTGTTTCTAGAGAGATAAGAGTC-AGTTCAGTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53792888 259 +  58131712 TTAATT--AGTTTCTTGCAAGTACAGGAAACTTGAGATCTATTCA----TAGGCAAAATTTTTTTTCCTATTTATTAGT-AGTGGTTAAGAAA--TGTCACATTCCTAACCATATGATGGTGACTG----TTGTTACTGATAGGTTTTGAGCTGTTTAGTTAACTGTGGAGGGGAAAATTGG-AGAAGTAAGTTGCAG--TAATTATGGCCTGTAGAA----ACCCATTTTATGAGGTCTT-GTGTTTGTGTTTCTGGAGAGATAAGAGTC-AGTTCAGTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409157 259 -   3636681 TTAATT--AGTTTCTTGCAAGTGCAGGAAACTTGAGATCTATTCA----TAGGCAAAATTTTTTTTCCTATTTATTAGT-AGTGGTTAAGAAA--TGTCACATTCCTAACCATATGATGGCGACTG----TTGTTACTGATAGTTTTTGAGCTGTTTAGTTAACTGTGGAGGGGAAAATTGG-AGAAGTAAGTTGTAG--TAATTATGGCCTGTAGAA----ACCCATTTTATGAGGTCTT-GTGTTTGTGTTTCCAGAGAGATAAGAGTC-AGTTCAGTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       387305 259 -   4457520 TTAGTT--AGTTTCTTGCAAGTGCAGGAAACTTGAGATCTCTTAA----TAGGCAAAAATTTTTTTCCTATTTATTAGT-AGTGGTTAAGAAA--TGTCACACTCCTAACCATATGATGGTGACTG----TTGTTACTGATAGTTTTTGAGCTGTTTAGTTAACTGTAGAGGGGAAAATTGG-AGAAGTAAGTTGCAG--TAATTATGGCCTGTAGAA----ACCCATTTTATGAGGTCTT-GTGTTTGTGTTTCTAGAGAGATAAGAGTC-AGTTCAGTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55201622 266 + 190850796 TTAATT--AGTTCCTTGCAAGTGCACTAAACTTGAGATCTATTAA----TAGGCA--AATTTTTTTCCTATTTATTATT-ACTGCTTAAGAAATGTGCCACACCCCTAACCATATCATGGTGAAGGTTGTTTGTTACTGATAGTTGTTGAGCCGTTTAGTTAACTGTCGAGGGAAACCTTGG-AGAAGTCAGTTGCAG--TAATTATGGCCTATAGAAACTCACTCATTTC-TCAGCTCTT-GTGTTTGTGTTTCTGGAGAGACAAGAGTT-AGTTCAGTT
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             271607 265 -   2682657 TTAATT--AGTTCCTTGCAAGTGCACAAAACTTGAGATCTATTAATAGTTAGGCA--TTTTTTCCCCCTATTTATTATA-ACTGGTTAAGAAATCTGCCACACCCCTAACCGTATCACGGTGA-------CTGTTTCTGATAGCTGTTGAGCCGTTTAGTTAACTGTGGAGGGGAACGTTGC-AGAAGTAAGTTGCAG--TAATTATGGCCTATAGAAACTCACTAATTTTATCAGGTCTTGGCGTTTGTGTTTCTGGAGGGACAACAGTT-AGTTCAGTT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       282468 270 -   2086007 TTAATT--AGTTCTTTGCAAGCGCACAAAACTTGAGATCTGTTAATAGTTGGGCAT-TTTTTTTTTCCTGTTTATTATT-ACTGGTTAAGAAATCTGCCACACCCCTAACCGTATGATGGTGACTGTCGTTTGTTACTGATAGTTGTTGAGCCGTTTAGTTAACTGTGGAGGGGAACGTTGG-AGAAGTAAGTTGCAG--TAATTATGGCCTATAGAAACTCACTCGTTTTATCAGGTCTT-GTGTTTGTGTTTCTGGAGAGAC--GAGTT-AGTTCAGTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       347040 257 +   3831555 TTAATT--AGTTCCTTGCAAGTGCACAAAACTTGAGATCCATTAATAGTTAGGCA--ATTTTTTTTCCTATTTGTTATTAACTGGTTAAGAAATCTGCCACACCCCTAACCATATCATAGTGACTCTTGTTTGTTACTGATAGTTGTTGAGCCGTTTAGCTAACTGTGGAGGGGAGCGTTGG--------------AG--TAATTATGGCCCATAGAAACTCACTCATTTTATCAGGTCTT-GTGTTTGTGTTTCTGGAGAGAC--GTGTT-AGTTCAGTT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116194754 259 + 116334831 TTAATT--AGTTATTTTTAAATGCAAGAAACTTGAGGTCTAGTTA----TGAAAA----TTTTTTCCTTTT----TGTT-ATTGTTTGAGAAGGCTGTATCATTTCCAACCATATCTTGGTGATTGTTGTTTGTTATTGATAGTTTTTGAGATGTTCACTTAACTGTGTGGGGGAAAATTCA-AGAGGTGACATGTAGATTTATTATGGCCTGCAGAAACTCCCTTGTTTTATGGGATTTT-GTGTTTGTGTTTCTGGAGAGTTGAG-----AGTTCAGTT
i micMur3.chr9              C 0 C 0
s otoGar3.GL873689             346962 262 +   3845361 TTAATT--AGTTATTTTTAAATGCAGGAAACTTGAGATGTAGTTG----TGGAAA----AGTTTTTCTTTTTTAATACT-GTTGTTTGAGAAGTCTGTATCATTCCTAACCACATTTAGGTGACTGTTACTTTTTGCTGGTAG-TTTTGAGATGTTCAGTTAACTGTGTGTGGG-AAATTGG-AGAGGTGGCATGTGGATTTATTATGGCCTGCTGAAACTTCCTGGTT---TGGGGTTCT-CTGTTTGTGTTTCTGGAGAGACAAGTGTT-AGTTCATTT
i otoGar3.GL873689          N 0 C 0
s canFam3.chr3               59923976 238 -  91889043 TTAATTGCACTTATGTGTAAGTGCAAGTAACTTGAGATCTGGTTA----TGGAAA-------------CATTTGTTCTA------TTAAGAGGTCTGTATTATTCTTAACCATTTCTTGTTGACTG------TTTAGTGATAG-TTTTGAGAGGTTTAGTTATTTATGAGGGGA---------AGAAGTAACATGTGG--TAATTATGTCCTGCAGAAACGGCCTCATT-TATGGGACCCT-ATATTTGCGTTTCTAGGGAGACAAGAGTTCAGTTGAGCT
i canFam3.chr3              C 0 I 178
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I

a score=346050.000000
s hg38.chr15_KI270851v1_alt    139742 25 +    263054 GAGCTGTTTGTTTTGTCTTTGTAAC
s panTro5.chr15              73713812 25 -  83230942 GAGCTGTTTGTTTTGTATTTGTAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017512 25 -  99763055 GAGCTGTTTGTTTTGTATTTGTAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66225 25 -    281578 GAGCTGTTTGTTTTGTATTTGTAAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922095 25 + 121039945 GAGCTGTTTGGTTTGTATTTGTAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164224821 25 - 169600520 GAGCTGTTTGTTTTGTATTTGTAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165544377 25 - 171882078 GAGCTGTTTGTTTTGTATTTGTAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       385997 25 +   2379783 GAGCTGTTTGTTTTGTATTTGTAAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       361939 25 +   4116138 GAGCTGTTTGTTTTGTATTTGTAAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793147 25 +  58131712 GAGCTGTTTGTTTTGTATTTGTAAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409416 25 -   3636681 GAGCTGTTTGTTTTGTATTTGTAAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       387564 25 -   4457520 GAGCTGTTTGTTTTGTATTTGTAAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55201888 25 + 190850796 GAGCTGTTTGCTTTGTATTTGTAAC
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             271872 25 -   2682657 GGGCTGTTTGTTTTGTATTCGTAAC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       282738 25 -   2086007 GAGCTGTTTGTTTTGTATTTGTGAC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       347297 25 +   3831555 GAGCTGTTTGTTTTGTATTTGTAAG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116195013 25 + 116334831 GAGCTGTTTGTTTTATATTTGTAAC
i micMur3.chr9              C 0 I 12
s otoGar3.GL873689             347224 25 +   3845361 GAGATGTTTCTTTTACGTTTGTAAC
i otoGar3.GL873689          C 0 I 2
s canFam3.chr3               59924392 25 -  91889043 GAGCTGTATTTTTAGTATTTGGAAG
i canFam3.chr3              I 178 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I

a score=140705.000000
s hg38.chr15_KI270851v1_alt    139767 13 +    263054 --TCCTTATTAAGAG
s panTro5.chr15              73713837 13 -  83230942 --TCCTTATTAAGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017537 13 -  99763055 --TTCTTATTAAGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66250 13 -    281578 --TCCTTATTAAGAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922120 13 + 121039945 --TCCTTATTAAGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164224846 13 - 169600520 --TCCTTATTAAGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165544402 13 - 171882078 --TCCTTATTAAGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       386022 13 +   2379783 --TCCTTATTAAGAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       361964 13 +   4116138 --TCCTTATTAAGAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793172 13 +  58131712 --TCCTTATTAAGAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409441 13 -   3636681 --TCCTTATTAAGAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       387589 13 -   4457520 --TCCTTATTAAGAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55201913 13 + 190850796 --TCCTTGTTAAGAG
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             271897 13 -   2682657 --TCCTTTTTAAAAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       282763 13 -   2086007 --TCCTTGTTAAGAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       347322 13 +   3831555 --TCCTTATTAAGAG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             347251  6 +   3845361 --GTCTTA-------
i otoGar3.GL873689          I 2 C 0
s canFam3.chr3               59924417 15 -  91889043 TGGTCTTGTTAAGAG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116195038 12 + 116334831 I
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I

a score=317027.000000
s hg38.chr15_KI270851v1_alt    139780 26 +    263054 GAGTGCTCAG--ATTTTCACATCAAGAA
s panTro5.chr15              73713850 24 -  83230942 GA-TGCTCAG--ATTT-CACATGAAGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017550 26 -  99763055 GAGTGCTCAG--ATTTTCACATCAAGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66263 25 -    281578 GAGTGC-CAG--ATTTTCACATCAAGAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922133 26 + 121039945 GAGTGCTCAG--ATTTTCACGTCAAGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164224859 26 - 169600520 GAGTGCTCAG--ATTTTCACATCAAGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165544415 26 - 171882078 GAGTGCTCAG--ATTTTCACATCAAGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       386035 26 +   2379783 GAGTGCTCAG--ATTTTCACATCAAGAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       361977 26 +   4116138 GAGTGCTCAG--ATTTTCACATCAAGAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793185 26 +  58131712 GAGTGCTCAG--ATTTTCACATCAAGAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409454 26 -   3636681 GAGTGCTCAG--ATTTTCACATCAAGAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       387602 26 -   4457520 GAGTGCTCAG--ATTTTCACATCAAGAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55201926 26 + 190850796 GAGTGCTTGG--ATTTTCACGTCAAGAA
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             271910 26 -   2682657 GAGCGCTTGG--ATTTTCACGTCAAGAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       282776 26 -   2086007 GAGTGCTTGG--ATTTTCACGTCAAGAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       347335 26 +   3831555 GAGTGCTTGG--ATTTTCACGTCAAgaa
i aotNan1.NW_018503298v1    C 0 I 79
s micMur3.chr9              116195050 26 + 116334831 GAGTGCTTGG--ACTTTCGTATTAGGAA
i micMur3.chr9              I 12 C 0
s otoGar3.GL873689             347257 26 +   3845361 GAGTGCTTGG--ATGTTCACCTTAGGGA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59924432 28 -  91889043 GAGTGTTCAGGTGTTTTCACATAAAGAA
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I

a score=872923.000000
s hg38.chr15_KI270851v1_alt    139806 104 +    263054 TATGAGGAAAC--AATGTTGGCCTTAGA--TCCTAATTTTTTGATTTAATGAGATAATTGCAAGCTTG-TCAGGACATTATTAAATAAATAATAACGGTAATATTTCGA
s panTro5.chr15              73713874 101 -  83230942 TGTGAG-AAAC--AATGTTGGCCTTAGA--TCCTAATTTTTT-ATTTAATGAGATAATTGCAAGCTC--TCAGGACATTATTAAATAAATAATAACAGTAATATTTCGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017576 104 -  99763055 TATGAGGAAAC--AATGTTGGCCTTAGA--TCCTAATTTTTTGATTTAATGAGATATATGCAAGCTTG-TCAGGACATTATTAAATAAATAATAACAGTAATATTTCGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66288 103 -    281578 TATGAGGAAAC--AATGTTGGCCTTAGA--TCCTAATTTTTTGATTTAATGAGATAATTGCAAGCTTG-TCAGGACATTATTAAATAAATAAT-ACAGTAATATTTCGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922159 104 + 121039945 TATAAGGAAAC--AATGTTGGCCTTAGA--TCCTAATTTTTTGATTTAATGAGGTAATTGCAAGCTTG-TCAGGACATTATTAAATAAATAATAACAGTAATGTTTCGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164224885 104 - 169600520 TATGAGGAAAC--AATGTTGGCCGTAAA--TATTAATTTTTTGATTTAATGAGATAATTGCAAGCTTC-TCAGGACATTATTAAATAAATAATAACAGTAATATTTCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165544441 104 - 171882078 TATGAGGAAAC--AATGTTGGCCGTAGA--TATTAATTTTTTGATTTAATGAGATAATTGCAAGCTTC-TCAGGACATTATTAAATAAATAATAACAGTAATATTTCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       386061 104 +   2379783 TATGAGGAAAC--AATGTTGGCCGTAGA--TATTAATTTTTTGATTTAATGAGATAATTGCAAGCTTC-TCAGGACATTATTAAATAAATAATAACAGTAATATTTCAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362003 104 +   4116138 TATGAGGAAAC--AATGTTGGCCGTAGA--TATTAATTTTTTGATTTAATGAGATAATTGCAAGCTTC-TCAGGACATTATTAAATAAATAATAACAGTAATATTTCAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793211 104 +  58131712 TATGAGGAAAC--AATGTTGGCCGTAGA--TACTAATTTTTTGATTTAATGAGATAATTGCAAGCTTG-TCAGGACATTATTAAATAAATAATAACAGTAATATTTCAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409480 104 -   3636681 TATGAGGAAAC--AATGTTGGCCGTAGA--TATTAATTTTTTGATTTAATGAGATAATTGCAAGCTTC-TCAGGACATTATTAAATAAATAATAACAGTAATATTTCAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       387628 104 -   4457520 TATGAGGAAAC--AACATTGGCCGTAGA--TATTAATTTTTTGATTTAATGAGATAATTGCAAGCTTG-TCAGGACATTATTAAATAAATAATAACAGTAATATTTCAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55201952  71 + 190850796 CATGAGGAAAC--AATATTGGT-----------------------------AGATAATTGCAAGCTTG-TCAGGACATTATCAAATGAAT------AGTAATATTTCAT
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             271936  77 -   2682657 CATGAGGAAAC--AGTATTGGT-----------------------------AGATAATTGCAAGCTCG-TCAGGACATTATCAAATAAATAGTAACAGTAATATTTCAT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       282802  77 -   2086007 CATGAGGAAAC--AATATTGGT-----------------------------AGATAATTGCAAGCTTG-TGAGGACGTTATCAAATAAATAGTAGCAGTAATATTTCAT
i cebCap1.NW_016107707v1    C 0 C 0
s micMur3.chr9              116195076 106 + 116334831 CATGAGGAAACAGAATGGTGGCCTTAGA--CTCTGTTGTTTTGATTTAACAAGATAATTATAAACTTG-TCAGGAAATTGTAAAATAAATAATACTAGTGATATTTTTG
i micMur3.chr9              C 0 C 0
s otoGar3.GL873689             347283  86 +   3845361 CATGAGGAAACAGAATGTTGGCCTGCGT--ATCTGTTGTTTTG--------------------ACTTC-TCAGAAAGTTAGCAAGTAAAAAATACTAGTGATATTTCTG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59924460  96 -  91889043 -------------TGTGTTGTCCTTAGACTTTCTAACGTTTTGATTTAATAATGTAATTGTAAGCTTGTTCAGAAATTTATCAATTAAACAATAGCAGTAATGTTTCTT
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e aotNan1.NW_018503298v1       347361  79 +   3831555 I

a score=1073894.000000
s hg38.chr15_KI270851v1_alt    139910 89 +    263054 TAGAC-----------AGTTCTT----------TACACCCAATCTACTTTTATTTGGAAATGGCTTGGAAAAAC--TACTTTT-GGAACTCCTTATCAGCAGCAAAAAGAAGT
s panTro5.chr15              73713975 90 -  83230942 TAGAC-----------AATTATT----------TACACCCAATCTACTTTTATTTGGAAATGGCTTGGAAAAACACTACTTTT-GGAACTCCTTATCAGCAGCAAAA-GAAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017680 88 -  99763055 TAGAC-----------AATTATT----------TACACCCAATCTAC-TTTATTTGGAAATGGCTTGGAAAAAC--TACTTTT-GGAACTCCTTATCAGCAGCAAAAAGAAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66391 89 -    281578 TAGAC-----------AATTATT----------TACACCCAATCTACTTTTATTTGGAAATGGCTTGGAAAAAC--TACTTTT-GGAACTCCTTATCAGCAGCAAAAAGAAGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922263 89 + 121039945 TAGAC-----------AATTCTT----------TACACCCAGTCTACTTTTATTTGGAAATGGCTTGGGAAAAC--TACATTT-GGAACTCCTTATCAGCAGCAAAAAGAAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164224989 89 - 169600520 TAGAC-----------AATCGTT----------TACCCCCAAGCTACTTTTATTTGGAAATGGCTTGGAAAAAC--TACTTTT-GGAACTCCTTATCAACAGCAAAAAGAAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165544545 89 - 171882078 TAGAC-----------AATCGTT----------TACCCCCAAGCTACTTTTATTTGGAAATGGCTTGGAAAAAC--TACTTTT-GGAACTCCTTATCAACAGCAAAAAGAAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       386165 89 +   2379783 TAGAC-----------AATCGTT----------TACCCCCAAGCTACTTTTATTTGGAAATGGCTTGGAAAAAC--TACTTTT-GGAACTCCTTATCAACAGCAAAAAGAAGT
i macNem1.NW_012011934v1    C 0 I 1088
s cerAty1.NW_012001462v1       362107 89 +   4116138 TAGAC-----------AATCGTT----------TACCCCCAAGCTACTTTTATTTGGAAATGGCTTGGAAAAAC--TACTTTT-GGAACTCCTTATCAACAGCAAAAAGAAGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793315 90 +  58131712 TAGAC-----------AATTGTT----------TACCCCCAAGCTACTTTTATTTGGAAATGACTTGGAAAAAC--TACTTTTGGGAACTCCTTATCAACAGCAAAAAGAAGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409584 89 -   3636681 TAGAC-----------AATCGTT----------TACCCCCAAGCTACTTTTATTTGGAAATGGCTTAGAAAAAC--TACTTTT-GGAACTCCTTATCAACAGCAAAAAGAAGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       387732 89 -   4457520 TAGAC-----------AATTGTT----------TACCCCCAAGCTACTTTTATTTGGAAATGGCTTGGAAAAAC--TACTTTT-GGAACTCCTTATCAACAGCAAAAAGAAGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55202023 89 + 190850796 TAGAC-----------AGTTCTT----------TACCTCTAAGCTACTTTTATTTGGAAATGGCTTGGAAAAAC--TACTTTT-GCAACTCCTGATCACGAGCAAAAAGAAGT
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             272013 89 -   2682657 TAGAC-----------AATTCTT----------TACCTCTAAACTACTTTTATTTGGAAATGGCTTGGAAAAGC--TACTTTT-GCAACTCCTTATCACGTGCAAAAAGAGGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       282879 89 -   2086007 TAGAC-----------AATTCTT----------TACCTCTAAGCTACTTTTATTTGGAAATGGCTTGGAAAAAC--TACTTTT-GCAACTCCTTATCAGGAGCAAAAAGAAGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       347440 89 +   3831555 TAGAC-----------AATTCTT----------TACCTCTAAGCTACTTTTATTTGGAAATGGCTTGGAAAAAC--TACTTTT-GCAACTCCTTATCACGAGCAAAAAGAAGT
i aotNan1.NW_018503298v1    I 79 C 0
s micMur3.chr9              116195182 88 + 116334831 TAGAT-----------GATTGTT----------TACCCCCAGGCTAGTTTTGTTTGCAAATGGTTT-GAAAAAC--TACTTTT-GGAACTCCATATCACCAGCAAAAAGAAGT
i micMur3.chr9              C 0 C 0
s otoGar3.GL873689             347369 98 +   3845361 TAG-T-----------GATTTTTTTGTTTTTTGTATCCCTAAGCTAATTCTGTTTGCAAATCGTTTGGAAAAAC--TACTTTG-GGAATGCCATATAACCAGTAAAAAGAAGT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59924556 98 -  91889043 TAGACtttattttttttattttt----------ttaCCCCAAGTTAGTTTCCTTTGCAAATGATTTGGAAAAAC--TACTTTC-GTAACT--GTATTAACAGCAAAAAGAAGG
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I

a score=174583.000000
s hg38.chr15_KI270851v1_alt    139999 14 +    263054 GTTTGAAATATTTT
s panTro5.chr15              73714065 14 -  83230942 GTTTGAAATATTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017768 14 -  99763055 GTTTGAAATATTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66480 14 -    281578 GTTTGAAATATTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922352 14 + 121039945 GTTTGAAATATTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164225078 14 - 169600520 GTTTGAAATATTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165544634 14 - 171882078 GTTTGAAATATTTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       362196 14 +   4116138 GTTTGAAATATTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793405 14 +  58131712 GTTTGAAATATTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409673 14 -   3636681 GTTTGAAATATTTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       387821 14 -   4457520 GTTTGAAATATTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55202112 14 + 190850796 GTTTGAAGTAGTTT
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             272102 14 -   2682657 GTTTGAAGTATTTt
i saiBol1.JH378292          C 0 M 1049
s cebCap1.NW_016107707v1       282968 14 -   2086007 GTTTGAAGTATTTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       347529 14 +   3831555 GTTTGAAGTATTTT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116195270 14 + 116334831 GTCTAGAATATTTT
i micMur3.chr9              C 0 C 0
s otoGar3.GL873689             347467 14 +   3845361 GTCTGAAATAGTTT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59924654 14 -  91889043 GTCTGAAATATTTT
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e macNem1.NW_012011934v1       386254 1088 +   2379783 I

a score=6581.000000
s hg38.chr15_KI270851v1_alt    140013 2 +    263054 GT
s panTro5.chr15              73714079 2 -  83230942 GT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017782 2 -  99763055 GT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66494 2 -    281578 GT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922366 2 + 121039945 GT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164225092 2 - 169600520 CT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165544648 2 - 171882078 CT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       362210 2 +   4116138 CT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793419 2 +  58131712 CT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409687 2 -   3636681 CT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       387835 2 -   4457520 CT
i colAng1.NW_012115278v1    C 0 C 0
s micMur3.chr9              116195284 2 + 116334831 GT
i micMur3.chr9              C 0 I 463
s otoGar3.GL873689             347481 2 +   3845361 GT
i otoGar3.GL873689          C 0 I 1
s canFam3.chr3               59924668 2 -  91889043 GT
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e aotNan1.NW_018503298v1       347543 0 +   3831555 C
e cebCap1.NW_016107707v1       282982 0 -   2086007 C
e macNem1.NW_012011934v1       386254 1088 +   2379783 I
e saiBol1.JH378292             272116 1049 -   2682657 M
e calJac3.chr3               55202126 0 + 190850796 C

a score=242875.000000
s hg38.chr15_KI270851v1_alt    140015 37 +    263054 GTGTGTC-----------------------TGTA------TTTTCCTACTCCCTAAGGTTAA-CCAT
s panTro5.chr15              73714081 37 -  83230942 GTGTGTC-----------------------TGTA------TTTTGCTACTCCCTAAGGTTAA-CCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017784 37 -  99763055 GTGTGTC-----------------------TGTA------TTTTCCTACTCCCTAAGGTTAA-CCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66496 37 -    281578 GTGTGTC-----------------------TGTA------TTTTCCTACTCCCTAAGGTTAA-CCAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922368 39 + 121039945 GTGTGTCT---------------------GTGTA------TTTTCCTACTCCCTAAGGTTAA-CCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164225094 39 - 169600520 GTGTGTCA---------------------GTGTA------TTTTCCTCCTCCCTAAGGTTAA-CCAT
i rheMac8.chr7              C 0 I 668
s macFas5.chr7              165544650 39 - 171882078 GTGTGTCA---------------------GTGTA------TTTTCCTCCTCCCTAAGGTTAA-CCAT
i macFas5.chr7              C 0 I 694
s cerAty1.NW_012001462v1       362212 39 +   4116138 GTGTGTCA---------------------GTGTA------TTTTCCTCCTCCCTAAGGTTAA-CCAT
i cerAty1.NW_012001462v1    C 0 I 1
s chlSab2.chr26              53793421 39 +  58131712 GTGTGTCA---------------------GTGTA------TTTTCCTCCTCCCTAAGGTTAA-CCAT
i chlSab2.chr26             C 0 I 1
s manLeu1.NW_012102332v1       409689 39 -   3636681 GTGTGTCA---------------------GTGTA------TTTTCCTCCTCCCTAAGGTTAA-CCAT
i manLeu1.NW_012102332v1    C 0 I 1
s colAng1.NW_012115278v1       387837 39 -   4457520 GTGTGTCA---------------------ATGTA------TTTTCCTCCTCCCTAAGGTTAA-CCAT
i colAng1.NW_012115278v1    C 0 I 1
s calJac3.chr3               55202126 35 + 190850796 --GTGTG-----------------------TATA------TTTTCCTCCTCCCTGAGGTTAA-CCAC
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       282982 37 -   2086007 GTGTGTG-----------------------TATA------TTTTTCTCCTCCCTGAGGTTAA-CCAT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       347543 37 +   3831555 GTGTGTG-----------------------TATA------TTTTCCTCCTCCCTGAGGTTAA-CCAT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             347484 60 +   3845361 TTGTGCCGCCCTGAAATATTTTGTAGTATGTATG------TGTTCTTCCTTCTTGGAAGTAT-TGGT
i otoGar3.GL873689          I 1 I 1
s canFam3.chr3               59924670 39 -  91889043 ----------------------------ACTGTAAATTGCTTCTTCTCTTTCCTGAGATTAACCCAT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116195286 463 + 116334831 I
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e macNem1.NW_012011934v1       386254 1088 +   2379783 I
e saiBol1.JH378292             272116 1049 -   2682657 M

a score=71131.000000
s hg38.chr15_KI270851v1_alt    140052 10 +    263054 TTTAAGTATT
s panTro5.chr15              73714118 10 -  83230942 TTTAAGTATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017821 10 -  99763055 TTTAAGTATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66533 10 -    281578 TGTAAGTATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922407 10 + 121039945 TTTAAGTATT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165545383 10 - 171882078 TTTAAGTATT
i macFas5.chr7              I 694 C 0
s cerAty1.NW_012001462v1       362252 10 +   4116138 TTTAAGTATT
i cerAty1.NW_012001462v1    I 1 C 0
s chlSab2.chr26              53793461 10 +  58131712 TTTAAGTATT
i chlSab2.chr26             I 1 C 0
s manLeu1.NW_012102332v1       409729 10 -   3636681 TTTAAGTATT
i manLeu1.NW_012102332v1    I 1 C 0
s colAng1.NW_012115278v1       387877 10 -   4457520 TTTAAGTATT
i colAng1.NW_012115278v1    I 1 C 0
s calJac3.chr3               55202161 10 + 190850796 TTTAGGTATT
i calJac3.chr3              C 0 I 4
s cebCap1.NW_016107707v1       283019 10 -   2086007 TTTAGGTATT
i cebCap1.NW_016107707v1    C 0 I 43
s aotNan1.NW_018503298v1       347580 10 +   3831555 TTTAGGTATT
i aotNan1.NW_018503298v1    C 0 I 4
s otoGar3.GL873689             347545  6 +   3845361 TTTATC----
i otoGar3.GL873689          I 1 C 0
s canFam3.chr3               59924709 10 -  91889043 TTTAAGTATT
i canFam3.chr3              C 0 I 4
e micMur3.chr9              116195286 463 + 116334831 I
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e macNem1.NW_012011934v1       386254 1088 +   2379783 I
e rheMac8.chr7              164225133 668 - 169600520 I
e saiBol1.JH378292             272116 1049 -   2682657 M

a score=76572.000000
s hg38.chr15_KI270851v1_alt    140062 13 +    263054 AAGTAATGT-----------------GCCT-----------
s panTro5.chr15              73714128 13 -  83230942 AAGTAATGT-----------------GCCT-----------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017831 13 -  99763055 AAGTAATGT-----------------GCCT-----------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66543 13 -    281578 AAGTAATGT-----------------GCCT-----------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922417 13 + 121039945 AAGTAATCT-----------------GCCT-----------
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165545393 13 - 171882078 AAGTAATCT-----------------GCCT-----------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       362262 13 +   4116138 AAGTAATCT-----------------GCCT-----------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793471 13 +  58131712 AAGTAATCT-----------------GCCT-----------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409739 13 -   3636681 AAGTAATCT-----------------GCCT-----------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       387887 13 -   4457520 AAGTAATCT-----------------GCCT-----------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55202175 13 + 190850796 AAGTAATCT-----------------GCCT-----------
i calJac3.chr3              I 4 I 26
s aotNan1.NW_018503298v1       347594 13 +   3831555 AAGTAATCT-----------------GCCT-----------
i aotNan1.NW_018503298v1    I 4 I 26
s otoGar3.GL873689             347551 13 +   3845361 AAGTAATCT-----------------ACCT-----------
i otoGar3.GL873689          C 0 I 26
s canFam3.chr3               59924723 41 -  91889043 AAGTAATCTCTACTTTTTTCAGTATAATCTTACATAGTGCA
i canFam3.chr3              I 4 C 0
e micMur3.chr9              116195286 463 + 116334831 I
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e cebCap1.NW_016107707v1       283029 43 -   2086007 I
e macNem1.NW_012011934v1       386254 1088 +   2379783 I
e rheMac8.chr7              164225133 668 - 169600520 I
e saiBol1.JH378292             272116 1049 -   2682657 M

a score=9555.000000
s hg38.chr15_KI270851v1_alt    140075 1 +    263054 T
s panTro5.chr15              73714141 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017844 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66556 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922430 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165545406 1 - 171882078 T
i macFas5.chr7              C 0 I 24
s cerAty1.NW_012001462v1       362275 1 +   4116138 T
i cerAty1.NW_012001462v1    C 0 I 24
s chlSab2.chr26              53793484 1 +  58131712 T
i chlSab2.chr26             C 0 I 26
s manLeu1.NW_012102332v1       409752 1 -   3636681 T
i manLeu1.NW_012102332v1    C 0 I 22
s colAng1.NW_012115278v1       387900 1 -   4457520 T
i colAng1.NW_012115278v1    C 0 I 26
s calJac3.chr3               55202214 1 + 190850796 T
i calJac3.chr3              I 26 C 0
s cebCap1.NW_016107707v1       283072 1 -   2086007 T
i cebCap1.NW_016107707v1    I 43 C 0
s aotNan1.NW_018503298v1       347633 1 +   3831555 T
i aotNan1.NW_018503298v1    I 26 C 0
s otoGar3.GL873689             347590 1 +   3845361 T
i otoGar3.GL873689          I 26 C 0
s canFam3.chr3               59924764 1 -  91889043 T
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116195286 463 + 116334831 I
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e macNem1.NW_012011934v1       386254 1088 +   2379783 I
e rheMac8.chr7              164225133 668 - 169600520 I
e saiBol1.JH378292             272116 1049 -   2682657 M

a score=596678.000000
s hg38.chr15_KI270851v1_alt    140076 77 +    263054 GACTGTTCATCAAAAGTCGTGTAGGCTGTTAAG-CAGTAGTTGATCATGGATACTTACACTGAAGTGTTA-TTGCCCCT------------
s panTro5.chr15              73714142 69 -  83230942 GACTGTTCATCAAAAGTCGTGTA--------AG-CAGTAGTTGATCATGGATACTTACACTGAAGTGTTA-TTGCCCCT------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017845 69 -  99763055 GACTGTTCATCAAAAGTCGTGTA--------AG-CAGTAGTTGATCATGCATACTTACACTGAAGTGTTA-TTGCCCCT------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66557 77 -    281578 GACTGTTCATCAAAAGTCGTGTAGGCTGTTAAG-CAGTAGTTGATCATGGATACTTACACTGAAGTGTTA-TTGCCCCT------------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922431 77 + 121039945 GACTGTTCATCAAAAGTCTTGTAGGCTGTTAAG-CAGTAGTTGATCATAGATACTTACACTGAAGTGTTA-TTGCCCCT------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164225801 73 - 169600520 GACTGTTCATCAAAAGTCGTGTACGCTGTTAAG-CAGTTGTTGATGATAGA----TGCACTAAAGTGTTA-TTGCCCTT------------
i rheMac8.chr7              I 668 C 0
s macFas5.chr7              165545431 73 - 171882078 GACTGTTCATCAAAAGTCGTGTACGCTGTTAAG-CAGTAGTTGATGATAGA----TGCACTAAAGTGTTA-TTGCCCTT------------
i macFas5.chr7              I 24 C 0
s macNem1.NW_012011934v1       387342 75 +   2379783 GACTGTTCATCAAAAGTCGTGTACGCTGTTAAGCCAGTAGTTGATGATAGA----TGCACTAAAGTGTTATTTGCCCTT------------
i macNem1.NW_012011934v1    I 1088 C 0
s cerAty1.NW_012001462v1       362300 70 +   4116138 GACTGTTCATCAAAAGTCGTGTATGCTGTTAAG-CAGTAGT---TGATAGA----TACACTAAAGTGTTA-TTGCCCTT------------
i cerAty1.NW_012001462v1    I 24 C 0
s chlSab2.chr26              53793511 73 +  58131712 GACTGTTCATCAAAAGTCGTGTATGCTGTTAAG-CAGTAGTTGATGGTAGA----TACACTAAAGTGTTA-TTGCCTTT------------
i chlSab2.chr26             I 26 C 0
s manLeu1.NW_012102332v1       409775 73 -   3636681 GACTGTTCATCAAAAGTCGTGTATGCTGTTAAG-CAGTAGTTGATGATAGA----TACACTAAAGTGTTA-TTGCCCTT------------
i manLeu1.NW_012102332v1    I 22 C 0
s colAng1.NW_012115278v1       387927 73 -   4457520 GACTGTTCATCAAAAGTCGTGTATGCTGTTAAG-CAGTAGTTGATGATAGA----TACACTAAAGTATTA-TTGCCCCT------------
i colAng1.NW_012115278v1    I 26 C 0
s calJac3.chr3               55202215 72 + 190850796 GACTGTTTATCAAAAATTATGTAGGCTA-TAAG-TAGTAGTTGATCATA----CTTACACTGAAGTGTTA-TTGCTCCT------------
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       283073 76 -   2086007 GACTGTTCATCAAAAATTATGTAGGCTA-TAAG-CAGTAGTTGATCATAGATGCTTACACTGAAGTGTTA-TTGCCCCT------------
i cebCap1.NW_016107707v1    C 0 I 307
s aotNan1.NW_018503298v1       347634 76 +   3831555 GACTGTTCATCAAAAATTATGTAGGCTA-TAAG-CAGTAGTTGATCATGGATACTTACACTGAAGTGTTA-TTGCCCCT------------
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             347591 68 +   3845361 GACTGTTCATT--AAGTCATGTAGTTTG-TAAG-CAG------ATCTTAGATACCTGTGGGGAAGTGTTA-TTGCCCCT------------
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59924765 85 -  91889043 AACGGTTTATCAAGAGTCGTATATTCTG-TAAG-CAC---TTGGTCGTAGATACTTGCAGTGAAGTATTA-TCACCCCTCtttttctttct
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116195286 463 + 116334831 I
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e saiBol1.JH378292             272116 1049 -   2682657 M

a score=77085.000000
s hg38.chr15_KI270851v1_alt    140153 9 +    263054 TCCTAATTT
s panTro5.chr15              73714211 9 -  83230942 TCCTAATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017914 9 -  99763055 TCCTAATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66634 9 -    281578 TCCTAATTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922508 9 + 121039945 TCCTAATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164225874 9 - 169600520 TCCTAATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165545504 9 - 171882078 TCCTAATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       387417 9 +   2379783 TCCTAATTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362370 9 +   4116138 TCCTAATTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793584 9 +  58131712 TCCTAATTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409848 9 -   3636681 TCCTAATTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388000 9 -   4457520 TCCTAATTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55202287 9 + 190850796 TCCCCGttt
i calJac3.chr3              C 0 C 0
s aotNan1.NW_018503298v1       347710 9 +   3831555 TCCCCGttt
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             347659 9 +   3845361 TCCTAAttc
i otoGar3.GL873689          C 0 I 2
s canFam3.chr3               59924850 9 -  91889043 tcttcttct
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116195286 463 + 116334831 I
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e cebCap1.NW_016107707v1       283149 307 -   2086007 I
e saiBol1.JH378292             272116 1049 -   2682657 M

a score=22800.000000
s hg38.chr15_KI270851v1_alt    140162 2 +    263054 TT
s panTro5.chr15              73714220 2 -  83230942 CT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017923 2 -  99763055 TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66643 2 -    281578 TT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922517 2 + 121039945 TT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164225883 2 - 169600520 TT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165545513 2 - 171882078 TT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       387426 2 +   2379783 TT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362379 2 +   4116138 TT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793593 2 +  58131712 TT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409857 2 -   3636681 TT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388009 2 -   4457520 TT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55202296 2 + 190850796 tt
i calJac3.chr3              C 0 C 0
s aotNan1.NW_018503298v1       347719 2 +   3831555 tt
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116195749 2 + 116334831 TT
i micMur3.chr9              I 463 C 0
s otoGar3.GL873689             347670 2 +   3845361 tt
i otoGar3.GL873689          I 2 C 0
s canFam3.chr3               59924859 2 -  91889043 tt
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e cebCap1.NW_016107707v1       283149 307 -   2086007 I
e saiBol1.JH378292             272116 1049 -   2682657 M

a score=100000.000000
s hg38.chr15_KI270851v1_alt    140164 10 +    263054 TTTT-TCTTTT
s panTro5.chr15              73714222  9 -  83230942 TTTT--CTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017925 11 -  99763055 CTTTTTCTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66645 11 -    281578 CTTTTTCTTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922519 11 + 121039945 CTTTTTCTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164225885 11 - 169600520 CTTTTTCTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165545515 11 - 171882078 CTTTTTCTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       387428 10 +   2379783 CTTTTTC-TTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362381 11 +   4116138 CTTTTTCTTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793595 11 +  58131712 CTTTTTCTTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409859 11 -   3636681 CTTTTTCTTTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388011 11 -   4457520 CTTTTTCTTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55202298  8 + 190850796 ---tttttttt
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       283456 10 -   2086007 -TTTTTCTTTT
i cebCap1.NW_016107707v1    I 307 C 0
s aotNan1.NW_018503298v1       347721 10 +   3831555 -tttttctttt
i aotNan1.NW_018503298v1    C 0 I 296
s micMur3.chr9              116195751 10 + 116334831 -TTTTTCTTTT
i micMur3.chr9              C 0 C 0
s otoGar3.GL873689             347672 10 +   3845361 -tccttctttt
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59924861 10 -  91889043 -tttttttttt
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e saiBol1.JH378292             272116 1049 -   2682657 M

a score=10438.000000
s hg38.chr15_KI270851v1_alt    140174 1 +    263054 T
s panTro5.chr15              73714231 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017936 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66656 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922530 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164225896 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165545526 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       387438 1 +   2379783 T
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362392 1 +   4116138 T
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793606 1 +  58131712 T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409870 1 -   3636681 T
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388022 1 -   4457520 T
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55202306 1 + 190850796 g
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       283466 1 -   2086007 T
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       348027 1 +   3831555 T
i aotNan1.NW_018503298v1    I 296 C 0
s micMur3.chr9              116195761 1 + 116334831 T
i micMur3.chr9              C 0 C 0
s otoGar3.GL873689             347682 1 +   3845361 t
i otoGar3.GL873689          C 0 I 200
s canFam3.chr3               59924871 1 -  91889043 t
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e saiBol1.JH378292             272116 1049 -   2682657 M

a score=44931.000000
s hg38.chr15_KI270851v1_alt    140175 5 +    263054 ----AAACA
s panTro5.chr15              73714232 5 -  83230942 ----AAACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017937 5 -  99763055 ----AAACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66657 5 -    281578 ----AAACA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922531 5 + 121039945 ----AAACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164225897 5 - 169600520 ----AAACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165545527 5 - 171882078 ----AAACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       387439 5 +   2379783 ----AAACA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362393 5 +   4116138 ----AAACA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793607 5 +  58131712 ----AAACA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409871 5 -   3636681 ----AAACA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388023 5 -   4457520 ----AAACA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55202307 5 + 190850796 ----aaaca
i calJac3.chr3              C 0 I 288
s cebCap1.NW_016107707v1       283467 5 -   2086007 ----AAACA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       348028 5 +   3831555 ----AAACA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116195762 5 + 116334831 ----AAATA
i micMur3.chr9              C 0 C 0
s canFam3.chr3               59924872 5 -  91889043 ttttA----
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e otoGar3.GL873689             347683 200 +   3845361 I
e saiBol1.JH378292             272116 1049 -   2682657 M

a score=407271.000000
s hg38.chr15_KI270851v1_alt    140180 44 +    263054 GGTATTGAGTGTTGGTAGATATGAGAGTCCAGTGTTTAGAGCTG
s panTro5.chr15              73714237 44 -  83230942 GGTATTGAGTGTTGGTAGATATGAGAGTCCAGTGTTTAGAGCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017942 44 -  99763055 GGTATTGAGTGTTGGTAGATATGAGAGTCCAGTGTTTAGAGCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66662 44 -    281578 GGTATTGAGTGTTGGTAGATATGAGAGTCCAGTGTTTAGAGCTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922536 44 + 121039945 GGTATTGAGTGTTGGTAGATATGAGGGTCCAGTGTTTAGAACTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164225902 44 - 169600520 CGTATTGAGTGTTTGTAGATATGAGAGCCCAGTGTTTAGAACTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165545532 44 - 171882078 CGTATTGAGTGTTTGTAGATATGAGAGCCCAGTGTTTAGAACTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       387444 42 +   2379783 CGTATT-AGTGTTTGTAGATATGAGAG-CCAGTGTTTAGAACTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362398 44 +   4116138 CGTATTGAGTTTTTGTAGATATGAGAGTCCAGTGTTTAGAACTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793612 44 +  58131712 CGTATTGAGCGTTTGTAGATATGAGAGTCCAGTGTTTGGAACTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409876 44 -   3636681 CGTATTGAGTTTTTGTAGATATGAGAGTCCAGTGTTTAGAACTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388028 44 -   4457520 CGTATTGAGTGTTTGTAGATATGAGAGTCCAGTGTTTAGAACTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55202600 41 + 190850796 GGTGTTGAG---TGTTAGATATTAGAGTCTGGTGTTTAGAACTA
i calJac3.chr3              I 288 C 0
s cebCap1.NW_016107707v1       283472 44 -   2086007 GGTGTTGAGCGTTGTTAGATATTAAAGTCTGGTGTTTGGAACTA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       348033 44 +   3831555 GGTGTTGAGTGTTGTTAGATATTAGAGTCCGGTGTTTAGAACTA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116195767 43 + 116334831 GGTGTTGAGTGCTGGTAAATATGGGAG-CCAGTGTTTAGAACTG
i micMur3.chr9              C 0 C 0
s canFam3.chr3               59924877 44 -  91889043 AGTGTTGAGTCTCAGTAGGTGTGAGAGCCAAGTGCTTAGAGCTA
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e otoGar3.GL873689             347683 200 +   3845361 I
e saiBol1.JH378292             272116 1049 -   2682657 M

a score=78244.000000
s hg38.chr15_KI270851v1_alt    140224 13 +    263054 TGTTGTGTggctg
s panTro5.chr15              73714281 13 -  83230942 TGTTGCGTggccg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017986 13 -  99763055 TGTTGCGTggccg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66706 13 -    281578 TGTTGTGTggccg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922580 13 + 121039945 TGTTGTGTGGCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164225946 13 - 169600520 TGTTGTGGggccg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165545576 13 - 171882078 TGTTGTGGggccg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       387486 11 +   2379783 TG-TGT-Gggccg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362442 13 +   4116138 TGTTGTGGggccg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793656 13 +  58131712 TGTTGTGGggccg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409920 13 -   3636681 TGTTGTGGggccg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388072 13 -   4457520 TGTTGTGGggctg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55202641 13 + 190850796 TGATGTGGggcta
i calJac3.chr3              C 0 I 581
s cebCap1.NW_016107707v1       283516 13 -   2086007 TGATGTGGggcca
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       348077 13 +   3831555 TGATGTGGgacta
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59924921  6 -  91889043 TGTTTT-------
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116195810  0 + 116334831 C
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e otoGar3.GL873689             347683 200 +   3845361 I
e saiBol1.JH378292             272116 1049 -   2682657 M

a score=127756.000000
s hg38.chr15_KI270851v1_alt    140237 18 +    263054 ggcgcagtggctcacgcc
s panTro5.chr15              73714294 18 -  83230942 ggcgcagtggctcacgcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74017999 18 -  99763055 ggcgcagtggctcacgcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66719 18 -    281578 ggcgcagtggctgacgcc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922593 18 + 121039945 GGCGCAGTGGCTCACGCC
i nomLeu3.chr6              C 0 M 329
s rheMac8.chr7              164225959 18 - 169600520 agtgcggtggctcacgcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165545589 18 - 171882078 agtgcggtggctcacgcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       387497 17 +   2379783 agtgc-gtggctcacgcc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362455 18 +   4116138 agtgcggtggctcacgcc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793669 18 +  58131712 agtgcggtggctcacgcc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409933 18 -   3636681 agtgcggtggctcacgcc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388085 18 -   4457520 agtgcggtggctcacgcc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55203235 18 + 190850796 ggcttggcggtgcatacc
i calJac3.chr3              I 581 C 0
s cebCap1.NW_016107707v1       283529 18 -   2086007 ggcaccatggctcatgcc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       348090 18 +   3831555 ggcaccgtggctcatgcc
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116195810  0 + 116334831 C
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e canFam3.chr3               59924927  0 -  91889043 C
e otoGar3.GL873689             347683 200 +   3845361 I
e saiBol1.JH378292             272116 1049 -   2682657 M

a score=278932.000000
s hg38.chr15_KI270851v1_alt    140255 47 +    263054 tgtaatcccgg-cagt-ttgggaggccgaggcgggtggatgccctgagg
s panTro5.chr15              73714312 45 -  83230942 tgtaatcc-gg-cagt-ttgggaggccgaggcgg-tggatgccctgagg
i panTro5.chr15             C 0 I 1013
s panPan2.chr15              74018017 47 -  99763055 tgtaatcccgg-cagt-ttgggaggccgaggcgggtggatgccctgagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66737 47 -    281578 tgtaatcccgg-cagt-ttgggaggccgaggcgggtggatgccctgagg
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164225977 47 - 169600520 tgttgtcctgg-cact-ttgggaggccgaggcgggtggatcccctgagg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165545607 47 - 171882078 tgttgtcctgg-cact-ttgggaggccgaggcgggtggatcccctgagg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       387514 48 +   2379783 tgttgtcctggccactgtcgggaggccgaggcgggtgga-cccctgagg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362473 47 +   4116138 tgttgtcctgg-cact-ttgggaggccgaggcgggtggatcccctgagg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793687 47 +  58131712 tgttgtcctgg-cact-ttggaaggccgaggcgggtggatcccctgagg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409951 47 -   3636681 tgttgtcctgg-cact-ttgggaggccgaggcgggtggatcccctgagg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388103 47 -   4457520 tgttatcccag-cact-ttgggaggctgaggcgggtggatcccctgagg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55203253 47 + 190850796 tgtaatcccag-ctac-tcaggagggtgaggcaggagaatcacttgaac
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       283547 45 -   2086007 tgtaatcccag-cact-ttgggaggccaagtcgggtggatca--tgagg
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       348108 47 +   3831555 tatattcccag-cact-ttgggaggccaaggtggatggatcccctgaag
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116195810  0 + 116334831 C
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e canFam3.chr3               59924927  0 -  91889043 C
e otoGar3.GL873689             347683 200 +   3845361 I
e nomLeu3.chr6               70922611 329 + 121039945 M
e saiBol1.JH378292             272116 1049 -   2682657 M

a score=82055.000000
s hg38.chr15_KI270851v1_alt    140302 13 +    263054 tcaggagttggga-
s panTro5.chr15               9418418 12 +  83230942 tcaggagttgg-a-
i panTro5.chr15             I 22498 C 0
s panPan2.chr15              74018064 12 -  99763055 tcaggagttgg-a-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66784 12 -    281578 tcaggagttgg-a-
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164226024 12 - 169600520 tcaggagttgg-a-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165545654 12 - 171882078 tcaggagttgg-a-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       387562 12 +   2379783 tcaggagttgg-a-
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362520 12 +   4116138 tcaggagttgg-a-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793734 12 +  58131712 tcaggagttgg-a-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       409998 12 -   3636681 tcaggagttgg-a-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388150 12 -   4457520 tcaggagtttg-a-
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55203300 12 + 190850796 ccaggaggcag-a-
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       283592 12 -   2086007 tcaggagttgg-a-
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       348155 12 +   3831555 tcatgagttgg-a-
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59924927 10 -  91889043 ---GGATTTTG-GA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116195810  0 + 116334831 C
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e otoGar3.GL873689             347683 200 +   3845361 I
e nomLeu3.chr6               70922611 329 + 121039945 M
e saiBol1.JH378292             272116 1049 -   2682657 M

a score=428311.000000
s hg38.chr15_KI270851v1_alt    140315 70 +    263054 gac-------------------------------cag------cctgaccaac-atggtgaaaccccgtctctactaaaaatacaaaattagccaggcgtggtggtgt
s panTro5.chr15               9418430 70 +  83230942 gac-------------------------------cag------cctgaccaac-atggtgaaaccccgtctctactaaaaatacaaaattagccaggcgtgatggtgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018076 70 -  99763055 gac-------------------------------cag------cctgaccaac-atggtgaaaccccgtctctactaaaaatacaaaattagccaggcgtggtggtgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66796 70 -    281578 gac-------------------------------cag------cctgaccaac-atggtgaaaccccgtctctactaaaaatacaaaattagccaggcgtggtggtgt
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164226036 76 - 169600520 ggc-------------------------------cagcctgaccctgaccaag-atggtgaaactccgtctctactaaaagtacaaaattagccaagtgtggtggtgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165545666 76 - 171882078 ggc-------------------------------cagcctgaccctgaccaag-atggtgaaactccgtctctactaaaagtacaaaattagccaagtgtggtggtgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       387574 70 +   2379783 ggc-------------------------------cag------cctgaccaag-atggtgaaactccgtctctactaaaagtacaaaattagccaagcgtggtggtgt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362532 70 +   4116138 ggc-------------------------------cag------cctgaccaag-atggtgaaaccccgtctctactaaaagtacaaaattagccaggcgtggtggtgt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793746 70 +  58131712 ggc-------------------------------cag------cctgaccaac-atggtgaaaccccgtctctactaaaagtacaaaattagccaggcgtggttgtgt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       410010 70 -   3636681 ggc-------------------------------cag------cctgaccaag-atggtgaaaccccgtctctactaaaagtacaaaattagccaggcgtggtgatgt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388162 70 -   4457520 gac-------------------------------cag------cctgacccac-atggtgaaaccccatctctacgaaaagtacaaaattagccaggcgtggtggtgt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55203312 82 + 190850796 ggttgcagtgagttgagatcatgctgttgcactccag------cctgggcaatgagagcaaaactttgtttc----aaagagaaggaaaaag----------------
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       283604 70 -   2086007 gat-------------------------------cag------cctgaccaac-atggtgaaaccccatctctcctaaaaatacaaaactagccaggcgtggtggtgc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       348167 70 +   3831555 gat-------------------------------cag------cctgaccaac-gtggtgaaaccccatctctactaaaaatacacaattagccaggcatggtggtgc
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116195810  0 + 116334831 C
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e canFam3.chr3               59924937  0 -  91889043 C
e otoGar3.GL873689             347683 200 +   3845361 I
e nomLeu3.chr6               70922611 329 + 121039945 M
e saiBol1.JH378292             272116 1049 -   2682657 M

a score=639825.000000
s hg38.chr15_KI270851v1_alt    140385 81 +    263054 atgcctgtaatcccagccactcgggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgggtcaag
s panTro5.chr15               9418500 81 +  83230942 atgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaagccgggaggtggaggttgcagtgggtcaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018146 81 -  99763055 atgcctgtaatcccagccactcgggaggctgaggcaggagaatcgcttgaacccggcaggtggaggttgcaatgggtcaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66866 81 -    281578 atgtctgtaatcccagccactcgggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgggtcaag
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70922940 81 + 121039945 ATgcttgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgcagtgggtcaag
i nomLeu3.chr6              M 329 C 0
s rheMac8.chr7              164226112 81 - 169600520 atgcctgtaatcccagctacttgggaggctgaggcaggagagtcgcttgaacctgggtggcggaggttgcagtgagtcgag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165545742 81 - 171882078 atgcctgtaatcccagctacttgggaggctgaggcaggagagtcgcttgaacctgggtggcggaggttgcagtgagtcgag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       387644 81 +   2379783 atgcctgtaatcccagctacttgggaggctgaggcaggagagtcgcttgaacctgggtggcggaggttgcagtgagtcgag
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362602 81 +   4116138 atgcctgtaattccagctacttgggaggctgaggcaggagagtcgcttgaacctgggtggcggaggttgcagtgagtcgag
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793816 81 +  58131712 atgcctgtaatcccagctacttgggaggctgaggcaggagagtcgcttgaacctgggtggcggaggttgcagtgagtcgag
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       410080 81 -   3636681 atgcctgtaattccagctacttgggaggctgagacaggagagtcgcttgaacctgggtggcagaggttgcagtgagtcgag
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388232 81 -   4457520 acgcctgtaatcccagctacttgggaggctgaggcaggagagtcgcttgaacctgagtggcagaggttgcagtgagtcgag
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55203394 66 + 190850796 aagcctgtaatcccagcactttgggaggctgaggcggttggatcacctgaggtcaggagttggaga---------------
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       283674 81 -   2086007 atacctgtaatcccagctactcaggaggctgaggcgggagaatcactggaacccaggaggcagaggttgcagtgagctgag
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       348237 81 +   3831555 atacctgtaatcccagctactcaggaggctcaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagatgag
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116195810  0 + 116334831 C
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e canFam3.chr3               59924937  0 -  91889043 C
e otoGar3.GL873689             347683 200 +   3845361 I
e saiBol1.JH378292             272116 1049 -   2682657 M

a score=274936.000000
s hg38.chr15_KI270851v1_alt    140466 32 +    263054 attgtgccgttgcactccagcctggacaatga
s panTro5.chr15               9418581 32 +  83230942 atcgtgccattgcactccagcctggaaaatga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018227 32 -  99763055 atcatgccattgcactccagcctggacaatga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66947 32 -    281578 atcatgccattgcactccagcctggacaatga
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923021 32 + 121039945 atcacgacattgcactccagcctgggcaatga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164226193 32 - 169600520 atcacgccattgcactccagcctgagcaatga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165545823 32 - 171882078 atcacgccattgcactccagcctgagcaatga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       387725 32 +   2379783 atcacgccattgcactccagcctgagcaatga
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362683 32 +   4116138 atcacgccattgcactccagcctgagcaatga
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793897 32 +  58131712 atcacgccattgcactccagcctgagcaatga
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       410161 32 -   3636681 atcacgccattgcactccagcctgagcaatga
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388313 32 -   4457520 atctcgccattgcactccagcctgagcaatga
i colAng1.NW_012115278v1    C 0 I 43
s calJac3.chr3               55203460 16 + 190850796 ----------------ccagtctgaccaatag
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             273205 32 -   2682657 atcacgctgttgcactccggcctgggcaatga
i saiBol1.JH378292          M 1049 C 0
s cebCap1.NW_016107707v1       283755 32 -   2086007 atgatgctgttgcacttcagcctgggcaatga
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       348318 32 +   3831555 atcacggtgttgcactccagcctgggcaatga
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116195810  0 + 116334831 C
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e canFam3.chr3               59924937  0 -  91889043 C
e otoGar3.GL873689             347683 200 +   3845361 I

a score=20434.000000
s hg38.chr15_KI270851v1_alt    140498 4 +    263054 gagc
s panTro5.chr15               9418613 4 +  83230942 gagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018259 4 -  99763055 gagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66979 4 -    281578 gagc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923053 4 + 121039945 gagc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164226225 4 - 169600520 gaac
i rheMac8.chr7              C 0 I 2
s macFas5.chr7              165545855 4 - 171882078 gaac
i macFas5.chr7              C 0 I 2
s macNem1.NW_012011934v1       387757 4 +   2379783 gaac
i macNem1.NW_012011934v1    C 0 I 2
s cerAty1.NW_012001462v1       362715 4 +   4116138 taac
i cerAty1.NW_012001462v1    C 0 I 2
s chlSab2.chr26              53793929 4 +  58131712 gaac
i chlSab2.chr26             C 0 I 25
s manLeu1.NW_012102332v1       410193 4 -   3636681 gaac
i manLeu1.NW_012102332v1    C 0 I 2
s calJac3.chr3               55203476 3 + 190850796 gtg-
i calJac3.chr3              C 0 I 3
s saiBol1.JH378292             273237 4 -   2682657 gagc
i saiBol1.JH378292          C 0 I 4
s cebCap1.NW_016107707v1       283787 4 -   2086007 gagc
i cebCap1.NW_016107707v1    C 0 I 4
s aotNan1.NW_018503298v1       348350 4 +   3831555 gagc
i aotNan1.NW_018503298v1    C 0 I 4
e micMur3.chr9              116195810 0 + 116334831 C
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e canFam3.chr3               59924937 0 -  91889043 C
e otoGar3.GL873689             347683 200 +   3845361 I
e colAng1.NW_012115278v1       388345 43 -   4457520 I

a score=65740.000000
s hg38.chr15_KI270851v1_alt    140502 18 +    263054 tt--ttttttc----------aaaaaaaaa---
s panTro5.chr15               9418617 20 +  83230942 aaaactgtttc----------aaaaaaaaa---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018263 20 -  99763055 aaaactgtttc----------aaaaaaaaa---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        66983 20 -    281578 aaaactgtttc----------aaaaaaaaa---
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923057 20 + 121039945 aaaactgcttc----------aaaaaaaaa---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164226231 18 - 169600520 --aaccgtttc----------aaaaaaaaa---
i rheMac8.chr7              I 2 I 5
s macFas5.chr7              165545861 18 - 171882078 --aaccgtttc----------aaaaaaaaa---
i macFas5.chr7              I 2 I 5
s macNem1.NW_012011934v1       387763 18 +   2379783 --aaccatttc----------aaaaaaaaa---
i macNem1.NW_012011934v1    I 2 I 5
s cerAty1.NW_012001462v1       362721 18 +   4116138 --aaccgtttc----------aaaaaaaaa---
i cerAty1.NW_012001462v1    I 2 I 5
s manLeu1.NW_012102332v1       410199 18 -   3636681 --aaccgtttc----------aaaaaaaaa---
i manLeu1.NW_012102332v1    I 2 I 5
s calJac3.chr3               55203482 31 + 190850796 --ccctgtctctgaaaaaaaaaaaaaaaAGGAA
i calJac3.chr3              I 3 C 0
s saiBol1.JH378292             273245 21 -   2682657 --ctttgtttc----------aaagaaaaggaa
i saiBol1.JH378292          I 4 C 0
s cebCap1.NW_016107707v1       283795 21 -   2086007 --ctttgtttc----------aaagaaaagaaa
i cebCap1.NW_016107707v1    I 4 C 0
s aotNan1.NW_018503298v1       348358 19 +   3831555 --c--tgtttc----------aaagaaaagaaa
i aotNan1.NW_018503298v1    I 4 C 0
e micMur3.chr9              116195810  0 + 116334831 C
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e canFam3.chr3               59924937  0 -  91889043 C
e otoGar3.GL873689             347683 200 +   3845361 I
e colAng1.NW_012115278v1       388345 43 -   4457520 I
e chlSab2.chr26              53793933 25 +  58131712 I

a score=577.000000
s hg38.chr15_KI270851v1_alt    140520  8 +    263054 aaaaaaa------G
s panTro5.chr15               9418637 14 +  83230942 aaaaaaaaaaaaaG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018283  2 -  99763055 a------------G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67003  6 -    281578 aaaaa--------G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923077  9 + 121039945 aaaaaaaa-----G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164226254  8 - 169600520 aaagaaaT------
i rheMac8.chr7              I 5 C 0
s macFas5.chr7              165545884  8 - 171882078 aaagaaaT------
i macFas5.chr7              I 5 C 0
s macNem1.NW_012011934v1       387786  8 +   2379783 aaagaaaT------
i macNem1.NW_012011934v1    I 5 C 0
s cerAty1.NW_012001462v1       362744  4 +   4116138 ----aaaT------
i cerAty1.NW_012001462v1    I 5 C 0
s chlSab2.chr26              53793958  8 +  58131712 aaagaaaT------
i chlSab2.chr26             I 25 C 0
s manLeu1.NW_012102332v1       410222  8 -   3636681 aaagaaaT------
i manLeu1.NW_012102332v1    I 5 C 0
s calJac3.chr3               55203513  8 + 190850796 AAAGAAAT------
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             273266  8 -   2682657 aaagaaGT------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       283816  8 -   2086007 aaagaaGC------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       348377  8 +   3831555 aaagaaGT------
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116195810  0 + 116334831 C
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e canFam3.chr3               59924937  0 -  91889043 C
e otoGar3.GL873689             347683 200 +   3845361 I
e colAng1.NW_012115278v1       388345 43 -   4457520 I

a score=10035.000000
s hg38.chr15_KI270851v1_alt    140528 1 +    263054 C
s panTro5.chr15               9418651 1 +  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018285 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67009 1 -    281578 C
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923086 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164226262 1 - 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165545892 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       387794 1 +   2379783 C
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362748 1 +   4116138 C
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793966 1 +  58131712 C
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       410230 1 -   3636681 C
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388388 1 -   4457520 C
i colAng1.NW_012115278v1    I 43 C 0
s calJac3.chr3               55203521 1 + 190850796 C
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             273274 1 -   2682657 C
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       283824 1 -   2086007 T
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       348385 1 +   3831555 C
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116195810 0 + 116334831 C
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e canFam3.chr3               59924937 0 -  91889043 C
e otoGar3.GL873689             347683 200 +   3845361 I

a score=25976.000000
s hg38.chr15_KI270851v1_alt    140529 2 +    263054 TG
s panTro5.chr15               9418652 2 +  83230942 TG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018286 2 -  99763055 TG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67010 2 -    281578 TG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923087 2 + 121039945 TG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164226263 2 - 169600520 TG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165545893 2 - 171882078 TG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       387795 2 +   2379783 TG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362749 2 +   4116138 TG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793967 2 +  58131712 TG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       410231 2 -   3636681 TG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388389 2 -   4457520 TG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55203522 2 + 190850796 TG
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             273275 2 -   2682657 TG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       283825 2 -   2086007 TG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       348386 2 +   3831555 TG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116195810 2 + 116334831 TG
i micMur3.chr9              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e canFam3.chr3               59924937 0 -  91889043 C
e otoGar3.GL873689             347683 200 +   3845361 I

a score=584586.000000
s hg38.chr15_KI270851v1_alt    140531 55 +    263054 TTGTGGATGATGGGATTGTTA-TTCATAGTGTAATGTTACATAAGACAGAGTACAG
s panTro5.chr15               9418654 55 +  83230942 TTGTGGATGATGGGATTGTTA-TTCATAGTGTAATGTTACATAAGACAGAGTACAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018288 55 -  99763055 TTGTGGATGATGGGATTGTTA-TTCATAGTGTAATGTTACATAAGACAGAGTACAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67012 55 -    281578 CTGTGGATGATGGGATTGTTA-TTCATAGTGTAATGTTACATAAGACAGAGTACAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923089 55 + 121039945 TTGTGGATGATGGGATTGTTA-TTCATAGTGTAATGTTACATTAGACAGAGCATAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164226265 55 - 169600520 TTGTTGATGATGGGATTGTTA-TTCATAGTGTAATGTTACATAAGACAGAGCACAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165545895 55 - 171882078 TTGTTGATGATGGGATTGTTA-TTCATAGTGTAATGTTACATAAGACAGAGCACAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       387797 56 +   2379783 TTGTTGATGATGGGATTGTTACTTCATAATGAAATGTTACATAAGACAGAGCACAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362751 55 +   4116138 TTGTGGATGATGGGATTGTTA-TTCATAGCGTAATGTTACATAAGACAGAGCACAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53793969 55 +  58131712 TTGTGGATGATGGGATTGTTA-TTCATAGTGTAATGTTACATAAGACGGAGCACAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       410233 55 -   3636681 TTGTGGATGATGGGATTGTTA-TTCATAGTGTAATGTTACATAAGACAGAGCACAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388391 55 -   4457520 TTGTGGATGATGGGATTGTTA-CTCATGGTGTAATGTTACATAAGACAGAGCACAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55203524 55 + 190850796 TTGTGGTTGATGGGATTGTTA-TGCAGGGTGTGATGTTAGATAAGACAGAGCACAG
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             273277 55 -   2682657 TTGTGGATGATGGGATTGTTA-TGCAGGGGCTGATATTATGTAAGACAGAGCACAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       283827 53 -   2086007 TTGTGGATGATGGGATTGTTA-TGCAGGAGTTGATGTTAAGTAAGAC--GGCACAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       348388 55 +   3831555 TTGTGGATGATGGGATTGTTA-TGCAGGGTGTGATGTTATATAAGACAGAGCACAg
i aotNan1.NW_018503298v1    C 0 I 896
s micMur3.chr9              116195812 55 + 116334831 TTGTAGATGATGGGATTGTTA-TTAATGGTATAATGTTAGATAAGACAGAGCACAA
i micMur3.chr9              C 0 C 0
s canFam3.chr3               59924937 36 -  91889043 ---------------TTGTTA-TTAATGGGGTAATGTTAGAT----TAAAGCGCAA
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e otoGar3.GL873689             347683 200 +   3845361 I

a score=283181.000000
s hg38.chr15_KI270851v1_alt    140586 32 +    263054 AGAATTGGGTCAAGAATTGGTG---TAGTTACTCT
s panTro5.chr15               9418709 32 +  83230942 AGAATTGGGTCAAGAATTGGTG---TAGTTACTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018343 32 -  99763055 AGAATTGGGTCAAGAATTGGTG---TAGTTACTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67067 32 -    281578 AGAATTGGGTCAAGAATTGGTG---TAGTTACTCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923144 32 + 121039945 AGAATTGGGTCAAGAATTGGTG---TAGTTACTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164226320 28 - 169600520 AGAATTGGGTCAAGAATTGGTG-------TACTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165545950 28 - 171882078 AGAATTGGGTCAAGAATTGGTG-------TACTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       387853 28 +   2379783 AGAATTGGGTCAAGAATTGGTG-------TACTCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362806 28 +   4116138 AGAATTGGGTCAAGAATTGGTG-------TACTCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53794024 28 +  58131712 AGAATTGGGTCAAGAATTGGTG-------TACTCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       410288 28 -   3636681 AGAATTGGGTCAAGAATTGGTG-------TACTCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388446 28 -   4457520 AGAATTGGGTCAAGAATTGGTG-------TACTCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55203579 32 + 190850796 AAAATTGGGTCAAGAATTGGTG---TAGTTATTCT
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             273332 30 -   2682657 AGAATTGGGTCAAGAATTGTTG---TAGTAA--CT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       283880 30 -   2086007 AGAATGGGGTCAAGAATTGGTA---TAGTTA--CT
i cebCap1.NW_016107707v1    C 0 C 0
s micMur3.chr9              116195867 32 + 116334831 AGAATTGGGTTAAGAATTGGTA---TAGTTACTCT
i micMur3.chr9              C 0 I 397
s canFam3.chr3               59924973 35 -  91889043 AGGTTTGGGTCAAGAATTGGCATAGTAGTTACTCA
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e aotNan1.NW_018503298v1       348443 896 +   3831555 I
e otoGar3.GL873689             347683 200 +   3845361 I

a score=1177249.000000
s hg38.chr15_KI270851v1_alt    140618 127 +    263054 TTGGGTTTGTTTCTCTTTAAACATTTCCTTTGATTTAGCTATAATGAT------CTG-----TTTTGTCATTTT---AAGTGGATG-GGAGACGTGAGAGATGAGTACTTTCATATTTCTGAAATCCTGAGATTCAGGCAAA
s panTro5.chr15               9418741 127 +  83230942 TTGGGTTTGTTTCTCTTTAAACATTTCCTTTGATTTAGCTATAATGGT------CTG-----TTTTGTCATTTT---AAGTGGATG-GGAGAGGTGAGAGATGAGTACTTTCATATTTCTGAAATCCTGAGATTCAGGCAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018375 127 -  99763055 TTGGGTTTGTTTCTCTTTAAACATTTCCTTTGATTTAGCTATAATGAT------CTG-----TTTTGTCATTTT---AAGTGGATG-GGAGATGTGAGAGATGAGTACTTTCATATTTCTGAAATCCTGAGATTCAGGCAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67099 127 -    281578 TTGGGTTTGTTTCTCTTTAAACATTTCCTTTGATTTAGCTATAATGAT------CTG-----TTTTGTCATTTT---AAGTGGATG-GGAGAGGTGAGAGATGAGTACTTTCATATTTCTGAAATCCTGAGATTCAGGCAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923176 128 + 121039945 TTGGGTTTGTTTCTCTTTAAACATTTCCTTTGATTTAGCTATAATGGG------CTGT----TTTTGTCATTTT---AAGTGGATG-GGAGAGGTGAGAGATGAGTACTTTCATATTTCTGAAATCCTGAGATTCAGGCAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164226348 128 - 169600520 TTGGGTTTGTTTCTCTTTAAACATTTCCTTTGATTTAGCTATAATGGT------CTGT----TTTTGTCATTTT---AAGTGGGTG-GGAGAGGTGAGAGATGAGTGCTTTCATGTTTCCGAAATCCTGAGATTCAGGCAAA
i rheMac8.chr7              C 0 I 3
s macFas5.chr7              165545978 128 - 171882078 TTGGGTTTGTTTCTCTTTAAACATTTCCTTTGATTTAGCTATAATGGT------CTGT----TTTTGTCATTTT---AAGTGGGTG-GGAGAGGTGAGAGATGAGTACTTTCATGTTTCCGAAATCCTGAGATTCAGGCAAA
i macFas5.chr7              C 0 I 3
s macNem1.NW_012011934v1       387881 128 +   2379783 TTGGGTTTGTTTCTCTTTAAACATTTCCTTTGATTTAGCTATAATGGT------CTGT----TTTTGTCATTTT---AAGTGGGTG-GGAGAGGTGAGAGATGAGTACTTTCATGTTTCCGAAATCCTGAGATTCAGGCAAA
i macNem1.NW_012011934v1    C 0 I 3
s cerAty1.NW_012001462v1       362834 128 +   4116138 TTGGGTTTGTTTCTCTTTAAACATTTCCTTTGATTTAGCTATAATGGT------CTGT----TTTTGTCATTTT---AAGTGGGTG-GGAGAGGTGAGAGATGAGTACTTTCATGTTTCTGAAATCCTGAGATTCAGGCAAA
i cerAty1.NW_012001462v1    C 0 I 3
s chlSab2.chr26              53794052 128 +  58131712 TTGGGTTTGTTTCTCTTTAAACATTTCCTTTGATTTGGCTCTAATGGT------CTGT----TTTTGTCATTTT---AAGTGGGTG-GGAGAGGTGAGAGATGAGTACTTTCATGTTTCTGAAATCCTGAGATTCAGGCAAA
i chlSab2.chr26             C 0 I 3
s manLeu1.NW_012102332v1       410316 128 -   3636681 TTGGGTTTGTTTCTCTTTAAACATTTCCTTTGATTTAGCTATAATGGT------CTGT----TTTTGTCATTTT---AAGTGGGTG-GGAGAGGTGAGAGATGAGTACTTTCATGTTTCTGAAATCCTGAGATTCAGGCAAA
i manLeu1.NW_012102332v1    C 0 I 3
s colAng1.NW_012115278v1       388474 128 -   4457520 TTGGGTTTGTTTCTCTTTAAACATTTCCTTTGATTTAGTTGTAATGGT------CTGT----TTTTGTCATTTT---AAGTGGGTG-GAAGAGGTGAGAGATGAGTACTTCCATGTTTCTGAAATCCTGAGATTCAGGCAAA
i colAng1.NW_012115278v1    C 0 I 3
s calJac3.chr3               55203611 132 + 190850796 TTGGGTTTGTTTCTCTTTAAACATTTTCTTTTATTTAGCTATACTGAC--TTTTTTTT----CTTTGTCATTTT---AAGTGGGTG-GGAGAGGTGAGAGATGAGTAATTTTATGTTTCTGAAATCTTTAGATTCAGGCAAA
i calJac3.chr3              C 0 I 3
s saiBol1.JH378292             273362 134 -   2682657 CTGTGTTTGTTTCTCTTTAAACATTTCCTTTTATTTAGCTATAATGACGGTTTTTTTT----CTTTGTCATGTT---AAGTGGGTG-GGAGAGGTGAGAGATGAGTAATTTTATATTTCTGAAATCTTGAGATTCAGGCAAA
i saiBol1.JH378292          C 0 I 3
s cebCap1.NW_016107707v1       283910 128 -   2086007 C----TTTGTTTCTCTTTAAACATTTCCTTTTATTTAGCTATAATGGC--GTTTTTTT----CTTTGTCATGTT---AAGTGGGTA-GGAGAGGTGAGAGATGAGTAATTTTGTATTTCTGAAATCTTGAGATTCAGGCAAA
i cebCap1.NW_016107707v1    C 0 I 313
s canFam3.chr3               59925008 136 -  91889043 TTTGGTTTGTTGTTGTTTAAACATTGCCTTTTATTTAGCAATTACCTT------TTGTTTTCCTTTGTCTTTTTTTAAAGTGGGGGTAGGGAGATTTGAGATGAGTAATTTCTTATTTCGGAAATTTTGAGATTCAAGCAAA
i canFam3.chr3              C 0 I 3
e micMur3.chr9              116195899 397 + 116334831 I
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e aotNan1.NW_018503298v1       348443 896 +   3831555 I
e otoGar3.GL873689             347683 200 +   3845361 I

a score=38361.000000
s hg38.chr15_KI270851v1_alt    140745 7 +    263054 GTTTTAA
s panTro5.chr15               9418868 7 +  83230942 GTTTTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018502 7 -  99763055 GTTTTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67226 7 -    281578 GTTTTAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923304 7 + 121039945 GTTGTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164226479 7 - 169600520 GTTTTAA
i rheMac8.chr7              I 3 C 0
s macFas5.chr7              165546109 7 - 171882078 GTTTTAA
i macFas5.chr7              I 3 C 0
s macNem1.NW_012011934v1       388012 7 +   2379783 GTTTTAA
i macNem1.NW_012011934v1    I 3 C 0
s cerAty1.NW_012001462v1       362965 7 +   4116138 GTTTTAA
i cerAty1.NW_012001462v1    I 3 C 0
s chlSab2.chr26              53794183 7 +  58131712 GTTTTAA
i chlSab2.chr26             I 3 C 0
s manLeu1.NW_012102332v1       410447 7 -   3636681 GTTTTAA
i manLeu1.NW_012102332v1    I 3 C 0
s colAng1.NW_012115278v1       388605 7 -   4457520 GTTTTAA
i colAng1.NW_012115278v1    I 3 C 0
s calJac3.chr3               55203746 6 + 190850796 GTTTAA-
i calJac3.chr3              I 3 C 0
s saiBol1.JH378292             273499 6 -   2682657 GTTTAA-
i saiBol1.JH378292          I 3 I 304
s canFam3.chr3               59925147 7 -  91889043 ATTTTAA
i canFam3.chr3              I 3 C 0
e micMur3.chr9              116195899 397 + 116334831 I
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e aotNan1.NW_018503298v1       348443 896 +   3831555 I
e otoGar3.GL873689             347683 200 +   3845361 I
e cebCap1.NW_016107707v1       284038 313 -   2086007 I

a score=12855.000000
s hg38.chr15_KI270851v1_alt    140752 3 +    263054 TAG-
s panTro5.chr15               9418875 3 +  83230942 TAG-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018509 3 -  99763055 TAA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67233 3 -    281578 TAG-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923311 3 + 121039945 TAA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164226486 3 - 169600520 TAA-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165546116 3 - 171882078 TAA-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       388019 3 +   2379783 TAA-
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362972 3 +   4116138 TAA-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53794190 3 +  58131712 TAA-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       410454 3 -   3636681 TAA-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388612 3 -   4457520 TAA-
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55203752 3 + 190850796 AAA-
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             273809 3 -   2682657 TAA-
i saiBol1.JH378292          I 304 C 0
s canFam3.chr3               59925154 3 -  91889043 -AGC
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116195899 397 + 116334831 I
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e aotNan1.NW_018503298v1       348443 896 +   3831555 I
e otoGar3.GL873689             347683 200 +   3845361 I
e cebCap1.NW_016107707v1       284038 313 -   2086007 I

a score=59705.000000
s hg38.chr15_KI270851v1_alt    140755  7 +    263054 --------------TTGTTTT------
s panTro5.chr15               9418878  7 +  83230942 --------------TTGTTTT------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018512  6 -  99763055 --------------TTG-TTT------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67236  7 -    281578 --------------TTGTTTT------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923314  7 + 121039945 --------------TAATTTT------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164226489  7 - 169600520 --------------TTGTTTT------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165546119  7 - 171882078 --------------TTGTTTT------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       388022  7 +   2379783 --------------TTGTTTT------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362975  7 +   4116138 --------------TTGTTTT------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53794193  7 +  58131712 --------------TTGTTTT------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       410457  7 -   3636681 --------------TTGTTTT------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388615  7 -   4457520 --------------TTGTTTC------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55203755  7 + 190850796 --------------ttttttt------
i calJac3.chr3              C 0 I 284
s saiBol1.JH378292             273812  7 -   2682657 --------------TTGTTTT------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       284351  7 -   2086007 --------------TTGTTTT------
i cebCap1.NW_016107707v1    I 313 C 0
s aotNan1.NW_018503298v1       349339  7 +   3831555 --------------TTGTTTT------
i aotNan1.NW_018503298v1    I 896 C 0
s micMur3.chr9              116196296  7 + 116334831 --------------TTGTTTC------
i micMur3.chr9              I 397 C 0
s canFam3.chr3               59925157 27 -  91889043 TTGTTTTTTGTTTTTTGTTTTTTTTTT
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e otoGar3.GL873689             347683 200 +   3845361 I

a score=815116.000000
s hg38.chr15_KI270851v1_alt    140762 69 +    263054 TATATTAGTGTTTATGTATTTTGAGAAACTTTTTGGAGTAAAGGACTTTACGTAATGAAGTTTTTTTCT
s panTro5.chr15               9418885 69 +  83230942 TATATTAGTGTTTATGTATTTTGAGAAACTTTTTGGAGTAAAGGACTTTACATAATGAAGTTTTTTTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018518 68 -  99763055 TATATTAGTGTTTATGTATTTTGAGAAACTTTTTGGAGTAAAGGACTTTACGTAATGAAG-TTTTTTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67243 69 -    281578 TATATTAGTGTTTATGTATTTTGAGAAACTTTTTGGAGTAAAGGACTTTACGTAATGGAGTTTTTTTCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923321 69 + 121039945 TATATTAGTGGTTATGTATTTTGAGAAACTTTTTGGAGTAAAGGACTTTACGTAATGAAGTTTTCTTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164226496 69 - 169600520 TATATTAGTGTTTATGTATTTTGAGAAACTTTTTGGAGTAAAGGAGTTTACCTAATGAAGTTTTTTTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165546126 69 - 171882078 TATATTAGTGTTTATGTATTTTGAGAAACTTTTTGGAGTAAAGGAGTTTACCTAATGAAGTTTTTTTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       388029 69 +   2379783 TATATTAGTGTTTATGTATTTTGAGAAACTTTTTGGAGTAAAGGAGTTTACCTAATGAAGTTTTTTTCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       362982 69 +   4116138 TATATTAGTGTTTATGTATTTTGAGAAACTTTTTGGAGTAAAGGAGTTTACCTAATGAAGTTTTTTTCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53794200 69 +  58131712 TATATTAGTGTTTATGTATTTTGAGAAACTTTTTGGAGTAAAGGAGTTTACCTAATGAAGTTTTTTTCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       410464 69 -   3636681 TATATTAGTGTTTATGTATTTTGAGAAACTTTTTGGAGTAAAGGAGTTTACCTAATGAAGTTTTTTTCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388622 63 -   4457520 TATATTAGTGTTTATGTATTTTGAGAAACTTTTTGGAGTAAA------TACCTAATGAAGTTATTTTCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55204046 69 + 190850796 TATATTAGTGTTTATGTATTTTGTGAAACTTATTGGAGTAGATGACTTTGCCTAATGAAGTTTTTTTCT
i calJac3.chr3              I 284 C 0
s saiBol1.JH378292             273819 69 -   2682657 TATATTAGTGTTTATGTATTTTGAGAAACTTATTGGAGTAGAGGACTTTACCTAATGAATTTTTTTTCT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       284358 69 -   2086007 TATATTAGTGTTTATGTATTTTGAGAAACTTATTGGAGTAGAGGACTTTACCTAATGAAGCTTTTTTCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       349346 69 +   3831555 TATATTAGTGTTTATGTATTTTGAGAAACTTATTGGAGTAGAGGACTTTACCTAATGAACTTTTTTTTT
i aotNan1.NW_018503298v1    C 0 I 12
s micMur3.chr9              116196303 69 + 116334831 TATATTAGTGTTTATGTGTTTTGAGAAACTTGTTGAAGTAAAGAACCTTGCATAATGAAGATTTTCCCT
i micMur3.chr9              C 0 C 0
s canFam3.chr3               59925184 66 -  91889043 TATATTAGTGTTTGTGTATTTTGCAGAAC---TTGAAGTAAAGAATTTTATCTCATAAAGTTTTTCTTT
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e otoGar3.GL873689             347683 200 +   3845361 I

a score=14022.000000
s hg38.chr15_KI270851v1_alt    140831 10 +    263054 ---TAATAATT--------GT
s panTro5.chr15               9418954 10 +  83230942 ---TAATAATT--------GT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018586 10 -  99763055 ---TAATAATT--------GT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67312 10 -    281578 ---TAATAATT--------GT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923390 10 + 121039945 ---TAATAATC--------GT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164226565 10 - 169600520 ---TAGTAATT--------GT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165546195 10 - 171882078 ---TAGTAATT--------GT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       388098 10 +   2379783 ---TAGTAATT--------GT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       363051 10 +   4116138 ---TAGTAATT--------GT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53794269 10 +  58131712 ---TAGTAATT--------GT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       410533 10 -   3636681 ---TAGTAATT--------GT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388685 10 -   4457520 ---TAGTAATT--------GT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55204115 13 + 190850796 ------TAGTTTAGCAGTT--
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             273888  5 -   2682657 ------TAGTT----------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       284427  5 -   2086007 ------TAGTT----------
i cebCap1.NW_016107707v1    C 0 C 0
s micMur3.chr9              116196372 10 + 116334831 ---CAGGAGTC--------GT
i micMur3.chr9              C 0 C 0
s canFam3.chr3               59925250 10 -  91889043 TCTTTTTAAT-----------
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e aotNan1.NW_018503298v1       349415 12 +   3831555 I
e otoGar3.GL873689             347683 200 +   3845361 I

a score=1326632.000000
s hg38.chr15_KI270851v1_alt    140841 119 +    263054 AATTTAATAACTGCTAAACATGAGTTCTAGTGTCTTGATCTAAAACCAG-TTTAATGCTGAATTGAGTTCCTATGATGGGTTGGGCAGATAAACATACAGTGAAGCACCATTTATATCTT
s panTro5.chr15               9418964 119 +  83230942 AATTTAATAACTGCTAAACATGAGTTCTAGTGTCTTGATCTAAAACCAG-TTTAATGATGAATTGAGTTCCTATGATGGGTTGGGCAGATAAACATATAGTGAAGCACCATTTATATCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018596 120 -  99763055 AATTTAATAACTGCTAAACATGAGTTCTAGTGTCTTGATCTAAAACTAGTTTTAATGCTGTATTGAGTTCCTATGATGGATTGGGCAGATAAACATACAGTGAAGCACCATTTATATCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67322 119 -    281578 AATTTAATAACTGCTAAACATGAGTTCTAGTGTCTTGATCTAAAACCAG-TTTAATGCTGAATTGAGTTCCTATGATGGGTTGGGCAGATAAACATACAGTGAAGCACCATTTATATCTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923400 119 + 121039945 AATTTAATAACTAGTAAACATGAGTTCCAGTGTCTTGATCTAAAACCAG-TTTAATGCTGAATTGGGTTCCTATGATAGGTTAGGCAGATAAACATACAGTGAAGCACCATTTATGTCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164226575 119 - 169600520 AATTTAATAACTGCTAAACATGAGTTCTAGTGTCTTGATCTAAAACTAG-TTTAATACTGAATTGAGTTCCTGTGATGGGTTAGGCAGATAACCATACAGTGAAGCACCATTTATGTCTT
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              165546205 119 - 171882078 AATTTAATAACTGCTAAACATGAGTTCTAGTGTCTTGATCTAAAACTAG-TTTAATACTGAATTGAGTTCCTGTGATGGGTTAGGCAGATAACCATACAGTGAAGCACCATTTATGTCTT
i macFas5.chr7              C 0 I 995
s macNem1.NW_012011934v1       388108 119 +   2379783 AATTTAATAACTGCTAAACATGAGTTCTAGTGTCTTGATCTAAAACTAG-TTTAATACTGAATTGAGTTCCTGTGATGGGTTAGGCAGATAACCATACAGTGAAGCACCATTTATGTCTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       363061 119 +   4116138 AATTTAATAACTGCTAAACATGAGTTCTAGTGTCTTGATCTAAAACCAG-TTTAATACTGAATTGAGTTCCTGTGATGGGTTAGGCAGATAATCATACAGTGAAGCACCATTTATGTCTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53794279 119 +  58131712 AATTTAATAACTGCTAAACATGAGTTCTAGTGTCTTGATCTAAAACCAG-TTTAATACTGAATTGAGTTCCTGTGATGGGTTAGGCAGATAACCATACAGTGAAGCACCATTTATGTCTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       410543 119 -   3636681 AATTTAATAACTGCTAAACATGAGTTCTAGTGTCTTGATCTAAAACTAG-TTTAATACTGAATTGAGTTCCTGTGATGGGTTAGGCAGATAATCATACAGTGAAGCACCATTTATGTCTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388695 119 -   4457520 AATTTAATAACTGCTAAACATGAGTTCTAGTGTCTTGATCTAAAAGCAG-TTTAATACTGAATTGAGTTCCTATGATGGGTTAGGCAGATAAACATACAGTGAAGCACCATTTATGTCTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55204128 119 + 190850796 AGTTTAATAACTGCTAAACATGAGTTCTAGTGTCTCGATCTAAAAGCAG-TTTAATGCTGAATTGAGTTCCTATGACGAGTTAGGCAGATAAACACACAGTGAAACAGCATTTATGTCTT
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             273893 102 -   2682657 -------TAATTGCTAAACGTGAGTTTTAGTGTCTTGATCTAAAAGCAG-TTTAATGCTGAGTTGAGTTCCTATGATTAGTTAGGCAGATAAACACACAGTGAAGCAGCA----------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       284432 115 -   2086007 ----TAATAACTGCTAAACATGAGTTCTAGTGTCTTGATCTAAAAGCAG-TTTAATGCTGAATTGAGTTCCTATGATGAGTTAGGCAGATAAACACACAGTGAAGCAGCATTTATGTCTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       349427 100 +   3831555 AGTTTAATAA----------------CTAGTGTCTTGATCTAAAAGCAG-TTTAATGCTGAATCGAGTTCCTATG---AGTTAGGCAGATAAACACACAGCGAAGCAGCATTTATGTCTT
i aotNan1.NW_018503298v1    I 12 C 0
s micMur3.chr9              116196382 113 + 116334831 AATTGATTAACTGCTA----TGAATTTTAGTGTCTTGATCTAAAATCAT-TTTAATGCTGAAAT--GTTGCTATGATGAGTTAGGCAGATATACATACATTGAAACACCATTTATGTCTT
i micMur3.chr9              C 0 C 0
s canFam3.chr3               59925260 117 -  91889043 AATTGAATAACTGCTTAATATGAGTTTTAGCCT-GTGATCTAAAACCAA-TTTAATGCTGAGTTGAGTTCCT-TGATGAGTCAGGCAGATATAAATAAAAAGAAACACTACTTATGCCTT
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e otoGar3.GL873689             347683 200 +   3845361 I

a score=35072.000000
s hg38.chr15_KI270851v1_alt    140960 3 +    263054 AGA
s panTro5.chr15               9419083 3 +  83230942 AGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018716 3 -  99763055 AGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67441 3 -    281578 AGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923519 3 + 121039945 AGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164226695 3 - 169600520 AGA
i rheMac8.chr7              I 1 I 315
s macFas5.chr7              165547319 3 - 171882078 aGC
i macFas5.chr7              I 995 C 0
s macNem1.NW_012011934v1       388227 3 +   2379783 AGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       363180 3 +   4116138 AGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53794398 3 +  58131712 AGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       410662 3 -   3636681 AGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388814 3 -   4457520 AGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55204247 3 + 190850796 AGA
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       284547 3 -   2086007 AGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       349527 3 +   3831555 AGA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116196495 3 + 116334831 AGA
i micMur3.chr9              C 0 C 0
s canFam3.chr3               59925377 3 -  91889043 AGA
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e otoGar3.GL873689             347683 200 +   3845361 I
e saiBol1.JH378292             273995 0 -   2682657 C

a score=131982.000000
s hg38.chr15_KI270851v1_alt    140963 19 +    263054 GGGCCTGTTGTTTTGATTT------
s panTro5.chr15               9419086 19 +  83230942 GGTCCTGTTGTTTTGATTT------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018719 19 -  99763055 GGGCCTGTTGTTTTGATTT------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67444 19 -    281578 GGGCCTGTTGTTTTGATTT------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923522 19 + 121039945 GGGCCTGTTGTTTTGATTT------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164227013 19 - 169600520 GGGCCTGTTGTTTTGATTT------
i rheMac8.chr7              I 315 C 0
s macFas5.chr7              165547322 19 - 171882078 GGGCCTGTTGTTTTGATTT------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       388230 19 +   2379783 GGGCCTGTTGTTTTGATTT------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       363183 19 +   4116138 GGGCCTGTTGTTTTGATTT------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53794401 16 +  58131712 GGGCC---TGTTTTGATTT------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       410665 19 -   3636681 GGGCCTGTTGTTTTGATTT------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388817 19 -   4457520 GGGCCTGTTGTTTTGATTT------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55204250 10 + 190850796 GGGCA---TGTTT------------
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       284550 13 -   2086007 GGGCCTGTTGTTT------------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       349530 13 +   3831555 GGGCCTATTGTTT------------
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116196498 19 + 116334831 Gtgcttgttattttgattt------
i micMur3.chr9              C 0 I 617
s canFam3.chr3               59925380 25 -  91889043 GTGCTTACCGTTTCACTTTTGATAT
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e otoGar3.GL873689             347683 200 +   3845361 I
e saiBol1.JH378292             273995  0 -   2682657 C

a score=451665.000000
s hg38.chr15_KI270851v1_alt    140982 60 +    263054 ATTAAGTTTAATACACAGTACTTGGTCCTTGTTACACATTTCCAATATGATTAGAAAGTC
s panTro5.chr15               9419105 60 +  83230942 ATTAAGTTTAATACACAGTACTTGGCCCTTGTTACACATTTCCAATATGATTAGAAAGTC
i panTro5.chr15             C 0 I 11
s panPan2.chr15              74018738 59 -  99763055 ATTAAGTTTAATACACAGTACTTGGCCCTTGTTACACATTTCCAATATGATTAGAAAGt-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67463 60 -    281578 ATTAAGTTTAATACACAGTAGTTGGCCCTTGTTACACATTTCCAATATGATTAGAAAGTC
i gorGor5.CYUI01000141v1    C 0 I 10
s nomLeu3.chr6               70923541 60 + 121039945 ATTAAGTTTAATACACAGTACTTGGCCCTTGTTACACATTTCCAATATGATTAGAAAGTC
i nomLeu3.chr6              C 0 I 7
s rheMac8.chr7              164227032 60 - 169600520 ATTAAGTGTAATATACAGTACCTGGCCCTTGTTACACATTTCCAGTATGATTAGAAAGTC
i rheMac8.chr7              C 0 I 9
s macFas5.chr7              165547341 60 - 171882078 ATTAAGTGTAATATACAGTACCTGGCCCTTGTTACACATTTCCAGTATGATTAGAAAGtc
i macFas5.chr7              C 0 I 9
s macNem1.NW_012011934v1       388249 60 +   2379783 ATTAAGTGTAATATACAGTACCTGGCCCTTATTACACATTTCCAGTATGATTAGAAAGTC
i macNem1.NW_012011934v1    C 0 I 880
s cerAty1.NW_012001462v1       363202 60 +   4116138 ATTAAGTGTAATATACAGTACCTGGCCCTTGTTACACATTTCCAGTATGATTAGAAAGTG
i cerAty1.NW_012001462v1    C 0 I 5
s chlSab2.chr26              53794417 60 +  58131712 ATTAAGTGTAATATACAGTACCTGGCCCTTGTTACACATTTCCAGTATGATTAGAAAGTC
i chlSab2.chr26             C 0 I 17
s manLeu1.NW_012102332v1       410684 60 -   3636681 ATTAAGTGTAATATACAGTACCTGGCCCTTGTTACACATTTCCAGTATGATTAGAAAGTC
i manLeu1.NW_012102332v1    C 0 I 15
s colAng1.NW_012115278v1       388836 60 -   4457520 ATTAAGTGTAATACACAGTACCTGGCCCTTGTTACACATTTCCAATATGATTAGAAAGTC
i colAng1.NW_012115278v1    C 0 I 10
s calJac3.chr3               55204260 41 + 190850796 ------------------TACTTGACCGTTCTTACAGATTTCCAATACGATTAGAAAGt-
i calJac3.chr3              C 0 I 6
s cebCap1.NW_016107707v1       284563 42 -   2086007 ------------------TCCTTGACCCTTCTTACACATTTGCAATATGATTAGAAAGTT
i cebCap1.NW_016107707v1    C 0 I 26
s aotNan1.NW_018503298v1       349543 41 +   3831555 ------------------TACTTGACCTTTCTTACACATTTCCAATATGATTAGATAGt-
i aotNan1.NW_018503298v1    C 0 I 6
s canFam3.chr3               59925405 56 -  91889043 ATTTAGTGTAATATACAG----TGGCCCTTTTTGGACATTTCAGATATTAGTCAAAAGTC
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116196517 617 + 116334831 I
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e otoGar3.GL873689             347683 200 +   3845361 I
e saiBol1.JH378292             273995  0 -   2682657 C

a score=316320.000000
s hg38.chr15_KI270851v1_alt    141042 38 +    263054 ttttttttgagacgcagtcttgctc-tgtcgcccaggct
s panTro5.chr15               9419176 38 +  83230942 ttttttttgagacgcagtcttgctc-tgtcgctcaggct
i panTro5.chr15             I 11 C 0
s panPan2.chr15              74018797 38 -  99763055 tcttttttgagacgcagtcttgctc-tgtcgcccaggct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67533 38 -    281578 ttttttttgagacgcagtcttgctg-tgtcgcccaggct
i gorGor5.CYUI01000141v1    I 10 C 0
s nomLeu3.chr6               70923608 38 + 121039945 tcttttttgaaacgcagtcttgctg-tgtcgcccaggct
i nomLeu3.chr6              I 7 C 0
s rheMac8.chr7              164227101 38 - 169600520 ttttttttgatatacagtcttactc-tgttgcccaggct
i rheMac8.chr7              I 9 C 0
s macFas5.chr7              165547410 38 - 171882078 ttttttttgatatacagtcttactc-tgttgcccaggct
i macFas5.chr7              I 9 C 0
s macNem1.NW_012011934v1       389189 38 +   2379783 ttttttttgagatacagtcttactc-tgttgcccaggct
i macNem1.NW_012011934v1    I 880 C 0
s cerAty1.NW_012001462v1       363267 38 +   4116138 ttttttttgagatacagtcttactc-tgttgcccaggct
i cerAty1.NW_012001462v1    I 5 C 0
s chlSab2.chr26              53794494 38 +  58131712 ttttttttgagatacagtcttactc-tgttgcccaggct
i chlSab2.chr26             I 17 C 0
s manLeu1.NW_012102332v1       410759 38 -   3636681 ttttctttgagatacagtcttactc-tgttgcccaggct
i manLeu1.NW_012102332v1    I 15 C 0
s colAng1.NW_012115278v1       388906 38 -   4457520 ttttttttgagatacagtcttactc-tcttgcccaggct
i colAng1.NW_012115278v1    I 10 C 0
s calJac3.chr3               55204307 38 + 190850796 ttttttttgagatggagtcttgctc-tgttgtccaggct
i calJac3.chr3              I 6 C 0
s saiBol1.JH378292             273995 39 -   2682657 ttttttttgagacggagtttcgctcttgttactcgggct
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       284631 34 -   2086007 tttgttttgagacggagtctt-----tgtcgtccaggcc
i cebCap1.NW_016107707v1    I 26 C 0
s aotNan1.NW_018503298v1       349590 38 +   3831555 ttttttttgagacgaagtcttgctc-tgttgtccaggct
i aotNan1.NW_018503298v1    I 6 C 0
s canFam3.chr3               59925461  9 -  91889043 ------------------------------ATCCAAGCT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116196517 617 + 116334831 I
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e otoGar3.GL873689             347683 200 +   3845361 I

a score=279433.000000
s hg38.chr15_KI270851v1_alt    141080 28 +    263054 ggcgtgcagtggcgcaatcttggctcac
s panTro5.chr15               9419214 28 +  83230942 ggcatgcagtggtgcaatcttggctcac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74018835 28 -  99763055 ggcgtgcagtggtgcaatcttggctcac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67571 28 -    281578 ggcatgcagtggcgcaatcttggctcac
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923646 28 + 121039945 ggcgtgcagtggcgcaatctttgctcac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164227139 28 - 169600520 ggtgtgcagcggtgcaatcttggctcac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165547448 28 - 171882078 ggtgtgcagtggtgcaatcttggctcac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       389227 28 +   2379783 ggtgtgcagtggtgcaatcttggctcac
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       363305 28 +   4116138 ggtgtgcagtggtgcaatcttggctcac
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53794532 28 +  58131712 ggtgtgcagtggcgcaatcttggctcac
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       410797 28 -   3636681 ggtgtgcagtggtgcaatcttggctcac
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388944 28 -   4457520 ggtgtgcagtggtgcaatcttggctcac
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55204345 28 + 190850796 agagtgcattggtgcaatcttggctcac
i calJac3.chr3              C 0 C 0
s saiBol1.JH378292             274034 28 -   2682657 ggagtgcagtggcgcgatctcggctcac
i saiBol1.JH378292          C 0 I 8736
s cebCap1.NW_016107707v1       284665 28 -   2086007 ggagtgcattggtgcaatcttggctcac
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       349628 28 +   3831555 ggagtgcattggtgcaatcttggctcac
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116196517 617 + 116334831 I
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e canFam3.chr3               59925470  0 -  91889043 C
e otoGar3.GL873689             347683 200 +   3845361 I

a score=1818329.000000
s hg38.chr15_KI270851v1_alt    141108 216 +    263054 tgcaacttccgcctcccgaatgcaagtgattctcccacctcagccttccgagtagctgggattacaagtgtgtgccaccatgcatgcccgactaatttttgtatttttagtagagat-ggggtttcactgtgttggcctggctggtctcctgacctcaaagcgatctgcctgcctcggcctcccaaattgctgggattacaggc------gtgagccactgca
s panTro5.chr15               9419242 216 +  83230942 tgcaacttccgcctcccgaattcaagtgattctcccacctcagccttccgagtagctgggattacaagtgtgtgccaccatgcatgcccgactaatttttgtatttttagtagagat-ggggtttcactatgttggcctggctggtctcctgacctcaaagcgatctgcctgcctcggcctcccaaattgctgggattacaggc------gtgagccactgcA
i panTro5.chr15             C 0 n 0
s panPan2.chr15              74018863 217 -  99763055 tgcaacttccgcctcccgaattcaagtgattctcccacctcagccttccgagtagctgggattacaagtgtgtgccaccatgcatgcccgactaatttttgtatttttagtagagatgggggtttcactatgttggcctggatggtctcctgacctcaaagcgatctgcctgcctcggcctcccaaattgctgggattacaggc------gtgagccactgca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67599 216 -    281578 tgcaacttccgcctcccgaatgcaagtgattctcccacctcagccttccgagtagctgggattacaagtgtgtgccaccatgcatgcccgactaatttttgtatttttagtagagat-ggggtttcactatgttggcctggctggtctcctgacctcaaagcgatctgcctgcttcggcctcccaaattgctgggattacaggc------gtgaaccactgca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923674 215 + 121039945 tgcgacttccgcctcccgaattcaagtgattctcccacctcagcctt-cgagtagctgggattataagtgtgtgccaccatgcatgcccgactaatttttgtatttttagtagagac-ggggtttcaccatgttggcccggctggtctcctgacctcaaagcgatctgcctgcctcagcctcccaaattgctgggattacaggc------gtgagccgctgca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164227167 216 - 169600520 ttcaacttccgcctcctgagttcaagtgattctcccacctcagcctcccgagtagctgggattacaagtgtgtgctaccatgcatgcgcaactaatttttgtatttttagtagagat-ggggtttcaccatgttggcccggctggtctcctgacctcaaagtgatctgcctgcctcggcctcccaaattgctgggattacaggc------gtgagccactgca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165547476 216 - 171882078 ttcaacttccgcctcctgagttcaagtgattctcccacctcagcctcccgagtagctgggattacaagtgtgtgctaccatgcatgcgcaactaatttttgtatttttagtagagat-ggggtttcaccatgttggcccggctggtctcctgacctcaaagtgatctgcctgcctcggcctcccaaattgctgggattacaggc------gtgagccactgca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       389255 216 +   2379783 ttcaacttccgcctcctgagttcaagtgattctcccacctcagcctcccgagtagctgggattacaagtgtgtgctaccatgcatgcgcaactaatttttgtatttttagtagagac-ggggtttcaccatgttggcccggctggtctcctgacctcaaagtgatctgcctgcctcggcctcccaaattgctgggattacaggc------gtgagccactgca
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       363333 216 +   4116138 ttcaacttccgcctcctgagttcaagtgattctcccacctcagcctcccgagtagctgggattacaagtgtgtgctactatgcatgcgcaactaatttttgtatttttagtcgagac-ggggtttcaccatgttggcccggctggtctcctgacctcaaagtgatctgcctgcctcggcctcccaaattgctgggattggaggc------gtgagccactgca
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53794560 222 +  58131712 ttcaacttccgcctcctgagttcaagtgattctcccacctcagcctcccgagtagctgggattacaagtgtgtgctaccatgcatgcgcaactaatttttgtatttttagtagagac-ggggtttccccatgttggcccagctggtctcctgacctcaaagtgatctgcctgcctcggcctcccaaattgctgggattacaggcgtgaaagtgagcccctgca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       410825 216 -   3636681 ttcaacttccgcctcctgagttcaagtgattctcccacctcagcctcccgagtagctgggattacaagtgtgtgctaccatgcatgcgcaactaatttttgtatttttagtagagac-ggggtttcaccatgttggcccggctggtctcctgacctcaaagtgatctgcctgcctcggcctcccaaattgctgggattagaggc------gtgagccactgca
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       388972 215 -   4457520 tgcaacttccgcct-ctgagttcaagtgattctcccacctcagcctcccgagtagctgggattacaagtgtgtgctaccatgcgtgcgcaactaatttttgtatttttagtagagac-ggggtttcaccatgttggcctggctggtctcctgacctcaaagtgatctgcctgcctcggcctcccaaattgctggaattacagac------gtgagccacagca
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55204373 212 + 190850796 tgcaacttccacctccttgtttcaagtgattctcccacctcagcctcccgagtagctggcattacaagtatgtgctac----catgcccgactaatttttatatttttagtagagac-gaggtttcaccatgttggccaggctggtcttctgacctcaaagtgatctccccgccttggcctcccaaattgctgggattacaagc------gtgagccgctgca
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       284693 182 -   2086007 tgcaacttccacctcctggtttcaagcgattctcccacctcagcctcccgagtagctggcattacaagtatgtgccac----catgccctactaatttttatatttttaatagagat-gcagtttcagcatgttggccaggctggtcttcggacctcaaagtgatctgcccgccttggcctcccTAA------------------------------------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       349656 212 +   3831555 tgcaacttccacctcctagttgcaagcgattctcccacctcagcctcccgagtagctggcattacaagtatgtgccac----catgcccgactaatttttatatttttagtagagat-gaggtttcaccatgttggctgggctggtcttctgacctcaaagtgatctgcccgccttggcctctcaaattgctggtattacaagc------gtgagccactgca
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116196517 617 + 116334831 I
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e canFam3.chr3               59925470   0 -  91889043 C
e otoGar3.GL873689             347683 200 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=148359.000000
s hg38.chr15_KI270851v1_alt    141324 29 +    263054 cctggccAAAAAAAAAAGTCATCTAAATT
s panTro5.chr15              73715370 29 -  83230942 cctggccAAAAAAAAAAGTCATCTAAATT
i panTro5.chr15             I 1013 C 0
s panPan2.chr15              74019080 28 -  99763055 cctggcc-AAAAAAAAAGTCATCTAAATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67815 29 -    281578 cctggccAAAAAAAAAAGTCATCTAAATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923889 28 + 121039945 cctggcc-GAAAAAAAAGTTATCTAAATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164227383 24 - 169600520 cctggcc-----AGAAAGTCGTCTGAATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165547692 24 - 171882078 cctggcc-----AGAAAGTCGTCTGAATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       389471 24 +   2379783 gctggcc-----AGAAAGTCGTCTGAATT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       363549 24 +   4116138 cctggcc-----AGAAAGTTGTCTGAATT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53794782 24 +  58131712 cctggcc-----AGAAAGTCATCTGAATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       411041 24 -   3636681 cctggcc-----AGAAAGTTGTCTGAATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       389187 24 -   4457520 cctggcc-----AGAAAGTCGTCTGAATT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55204585 24 + 190850796 cctggcc-----AGAAAGTTTTCTAAACT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       284875 11 -   2086007 ------------------TTTTCTAAACT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       349868 24 +   3831555 cctggcc-----AGAAAGTTTTCTAAACT
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116196517 617 + 116334831 I
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e canFam3.chr3               59925470  0 -  91889043 C
e otoGar3.GL873689             347683 200 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=928617.000000
s hg38.chr15_KI270851v1_alt    141353  99 +    263054 CCTCCTAGGAGTAAGGGAAACGA-CTAGGTTTTGGATAGTGTGCACCAGAGGAAAAATGTGTTACAGGT-------CTAAGTAGCATGAAAAAAGTGATTGCTAAGT
s panTro5.chr15              73715399  99 -  83230942 CCTCCTAGGAGTAAGGGAAATGA-CTAGGTTTTGGATAGTGTGCACCAGAGGAAAAATGTGTTACAGGT-------CTAAGTAGCATGAAAAAAGTGATTGCTAAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74019108  99 -  99763055 CCTCCTAGGAGTAAGGGAAATGA-CTAGGTTTTGGATAGTGTGCACCAGAGGAAAAATGTGTTACAGGT-------CTAAGTAGCATGAAAAAAGTGATTGCTAAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67844  99 -    281578 CCTCCTAGGAGTAAGGGAAATGA-CTAGGTTTTGGATAGTGTGCACCAGAGGAAAAATGTGTTACAGGT-------CTAAGTAGCATGAAAAAAGTGATTGCTAAGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70923917  99 + 121039945 CCTCCTAGGAGTAAGGGAAATGA-CTAGGTTTTGGATAGTGTGCACTAGAGGAAAAATGTGTTACAGGT-------CTAAGTAGCATGAAAAAAGTGATTGCTAACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164227407  99 - 169600520 CCTTCTAGGAGTAAGGGAAATGA-CTAGGTTTTGGATAGTGTGCACCAGAGGAAAAATGTGTCACAGGT-------CTAAGTAGCATGAAAAAAGTGATTGCTAACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165547716  99 - 171882078 CCTTCTAGGAGTAAGGGAAATGA-CTAGGTTTTGGATAGTGTGCACCAGAGGAAAAATGTGTCACAGGT-------CTAAGTAGCATGAAAAAAGTGATTGCTAACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       389495  99 +   2379783 CCTTCTAGGAGTAAGGGAAATGA-CTAGGTTTTGGATAGTGTGCACTAGAGGAAAAATGTGTCACAGGT-------CTAAGTAGCATGAAAAAAGTGATTGCTAACC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       363573  99 +   4116138 CCTTCTAGGAGTAAGGGAAATGA-CTAGGTTTTGGAGAGTGTGCACCAGAGGAAAAATGTGTTACAGGT-------CTAAGTAGCATGAAAAAAGTGATTGCTAACC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53794806  99 +  58131712 CCTTCTCGGAGTAAGGGAAATGA-CTAGGTTTTGGATAGTGTGCACCAGAGGAAAAATGTGTTACAGGT-------CTAAGTAGCATGAGAAAAGTGATTGCTAACC
i chlSab2.chr26             C 0 I 319
s manLeu1.NW_012102332v1       411065  99 -   3636681 CCTTCTAGGAGTAAGGGAAATGA-CTAGGTTTTGGATAGTGTGCACCAGAGGAAAAATGTGTTACAGGT-------CTAAGTAGCATGAAAAAAGTGATTGCTAACC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       389211  99 -   4457520 CCTTCCAGGAGTAAGGGAAATGA-CTAGGTTTTGGATAGTGTGCAACAGAGGAAAAATGTGTTACAGGT-------CTAAGTAGCATGAAAAAAGTGATTGCTAACC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55204609  98 + 190850796 CTCCCTAGGGGTAAGGGAAATGA-CTAGGGTTTAGACAGTGTGCACCAGAGGAAAAATGTGTTACAGGT-------ATAAGGAGAATGA-AAAAGTGATTGCCAACC
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       284886  98 -   2086007 CTTCCTAGGGGTAAGGGAAATGA-CTAGGGTTTGGATAGTGTGCACTAGAGGAAAAGTGTGTTACAGGT-------ATAAGGAGAATGA-AAAAGTGATTGCTAACC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       349892  98 +   3831555 CTTCCTAGGTGTAAGGGAAATGA-CTAGGGTTTGGGTAGTGTGCACCAGAGGAAAAATGTATTACAGGT-------ATAAGGAGAATGA-AAAAGTGATTGCTAACC
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59925470 105 -  91889043 CGTTCTAGGAATATGTGAAGAGACCTAGGTTTTGGAGA--GTGCACCAGAGGGAAAATGTGTTGTGGCTTTTGAAGCTACTTAATATGAAAAAAATGATTGCTGATG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116196517 617 + 116334831 I
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e otoGar3.GL873689             347683 200 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=983725.000000
s hg38.chr15_KI270851v1_alt    141452 114 +    263054 TTTGTTTTAT---GTTCCACCAGCATTGGTTGTTAAACACAAGGAATGAATGGTGGTGTTTTACCGTAAGGAATAAGACATGGTTTCCCTCTTTGGGGAGCTTCCCTGCAGACAGGA
s panTro5.chr15              73715498 114 -  83230942 TTTGTTTTAT---GTTCCACCAGCATTGGTTGTTAAACGCAAGGAATGAATGGTGGTGTTTTCCCCTAAGGAATAAGACATGGTTTCCCTCTTTGGGGAGCTTCCCTGCAGACAGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74019207 114 -  99763055 TTTGTTTTAT---GTTCCACCAGCATTGGTTGTTAAACACAAGGAATGAATAGTGGTGTTTTCCCCTAAGGAATAAGACATGGTTTCCCTCTTTGGGGAGCTTCCCTGCAGACAGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        67943 114 -    281578 TTTGTTTTAT---GTTCCACCAGCATTGGTTGTTAAACACAAGGAATGAATGGTGGTGTTTTACCCTACGGAATAAGACGTGGTTTCCCTCTTTGGGGAGCTTCCCTGCAGACGGGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70924016 114 + 121039945 TTTGTTTTAT---GTTCCACCAGCATTGCTTGTTAAATGCAAGGAATGAATGGTGTTGTTTTACCCTAAGGAATAAGACATGGGTTCCCTCTTTGGGGAGCTTCCCTGCAGACAGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164227506 111 - 169600520 TTTGTTTTAT---GTTCCTCCAGCATTGCTTGTTAAATGCAAGAAATGAATGCTGTTGTTTTA---TAAGGAATAAGCCATGGTTTCCCTCTTTGGGGAGCTTCCCTGCAGACAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165547815 111 - 171882078 TTTGTTTTAT---GTTCCTCCAGCATTGCTTGTTAAATGCAAGAAATGAATGCTGTTGTTTTA---TAAGGAATAAGCCATGGTTTCCCTCTTTGGGGAGCTTCCCTGCAGACAAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       389594 114 +   2379783 TTTGTTTTAT---GTTCCTCCAGCATTGCTTGTTAAATGCAAGAAATGAATGCTGTTGTTTTACCCTAAGGAATAAGCCATGGTTTCCCTCTTTGGGGAGCTTCCCTGCAGACAAGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       363672 114 +   4116138 TTTGTTTTAT---GTTCCTCCAGCATTGCTTGTTAAATGCAAGAAATGAATGCTGTTGTTTTACCCTAAGGAATAAGTCATGGTTTCCCTCTTTGGGGAGCTTCCCTGCAGACAAGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53795224 114 +  58131712 TTTGTTTTAT---GTTCCTCCAGCATTGCTTGTTAAATGCAAGAAATGAACGCTGTTGTTTTAGCCTAAGGAATAAGCCGTGGTTTCCCTCTTTCGGGAGCTTCCCTGCAGACAAGA
i chlSab2.chr26             I 319 C 0
s manLeu1.NW_012102332v1       411164 114 -   3636681 TTTGTTTTAT---GTTCCTCCAGCATTGCTTGTTAAATGCAAGAAATGAATGACGTTGTTTTACCCTAAGGAATAAGCCATGGTTTCCCTCTTTGGGGAGCTTCCCTGCAGACAAGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       389310 114 -   4457520 TTTGTTTTAT---GTTCCTCCAGCATTGCTTGTTAAATGCAAGAAGTGAATGCTGTTGTTTTACCCTAAGGAATAAGACATGGTTTCCCTCTTTGGGGAGCTTCCCTGCAGACAGGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55204707 114 + 190850796 TTTGTTTTAT---ATTTCTTCAGCATTGCTTGTTAAATGCAAGGAATGAATGTTGTTGTTTTACCCTAAGGAATGAGACGTGGTTTCCCCCTTTGGAGAGCTTCCTTTCGGACAGGA
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       284984 114 -   2086007 TGTGTTTTAT---ATGTCTCCAGCATTGCTTGTTAAATGCGAGGAATGAATGTTGTTGTTTTACCCCAAGGAATGAGACATGGTTTGCCCCTTTGGAGAGCTTCTTTTCAGACAGGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       349990 114 +   3831555 TTTGTTTTAT---ATTTTTCTAGCATTGCTTGTTAAATGCAAGGAATGAATGTTGTTGTTTTACCCTAAGGAATGAGACATGGTTTCCCCCTTTGGAGAGTTTCCTTTCAGACAGGA
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59925575  88 -  91889043 TTGGTTTTATATAATTTCTCCAGCATTGCTTGTTAAATATGAAGAACAAA---TGTTGTTTTAGCGTAAGAAAT--------------------------CCTTCCTGCAGACACAC
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116196517 617 + 116334831 I
e proCoq1.NW_012148396v1     13422805 2432 +  16154928 I
e otoGar3.GL873689             347683 200 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=84269.000000
s hg38.chr15_KI270851v1_alt    141566 7 +    263054 ATTGCAG
s panTro5.chr15              73715612 7 -  83230942 ATTGCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74019321 7 -  99763055 ATTGCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        68057 7 -    281578 ATTGCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70924130 7 + 121039945 ATTGCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164227617 7 - 169600520 ATTGCAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165547926 7 - 171882078 ATTGCAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       389708 7 +   2379783 ATTGCAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       363786 7 +   4116138 ATTGCAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53795338 7 +  58131712 ATTGCAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       411278 7 -   3636681 ATTGCAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       389424 7 -   4457520 ATTGCAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55204821 7 + 190850796 ATTGCAG
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       285098 7 -   2086007 ATTGCAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       350104 7 +   3831555 ATTGCAG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13425237 7 +  16154928 ATTACAG
i proCoq1.NW_012148396v1    I 2432 C 0
s canFam3.chr3               59925663 7 -  91889043 ATTGCAG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116196517 617 + 116334831 I
e otoGar3.GL873689             347683 200 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=2978891.000000
s hg38.chr15_KI270851v1_alt    141573 260 +    263054 ATGGAAGCCTTGTGCTCACAGGTTTTACCCTTATCTTGTTGAGGATGGCTCTCCCAGCTGGAGTGGGAAGCGCTTCA----CTGCT----TGAGACTTTTGTATTGGAAACAGAATTGACACCTGGGTAATGAATAATACATGGGATAGGAAGATGTTTCTTAGCCATAGGATTTAACCGATCTGTTTTCCACAGCTGTTTTTGTTCGAAATGCCCTTAAAAGTTTTAGTAACTTTAGAAAGGAAGAGTTTTTGGAG--TGTGAAAACTT------
s panTro5.chr15              73715619 260 -  83230942 ATGGAAGCCTTGTGCTCACAGGTTTTACCCTTATCTTGTTGAGGATGGCTCTCCCAGCTGGAGTGGGAAGCGCTTCA----CTGCT----TGAGACTTTTGTATTGGAAACAGAATTGACACCTGGGTAATGAATAATACATGGGATAGGAAGATGTTTCTTAGCCATAGGAGTTAACCGATCTGTTTTCCACAGCTATTTTTGTTTGAAATGCCCTTAAAAGTTTTAGTAACTTTAGAAAGGAAGAGTTTTTGGAG--TGTGAAAACTT------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74019328 260 -  99763055 ATGGAAGCCTTGTGCTCACAGGTTTTACCCTTATCTTGTTGAGGATGGCTCTCCCAGCTGGAGTGGGAAGCGCTTCA----CTGCT----TGAGACTTTTGTATTGGAAACAGAATTGACACCTGGGTAATGAATAATACATGGGATAGGAAGATGTTTCTTAGCCATAGGATTTAACCGATCTGTTTTCCACAGCTATTTTTGTTTGAAATGCCCTTAAAAGTTTTAGTAACTTTAGAAAGGAAGAGTTTTTGGAG--TGTGAAAACTT------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        68064 260 -    281578 ATGGAAGCCTTGTGCTCACAGGTTTTACCCTTATCTTGTTGAGGATGGCTCTCCCAGCTGGAGTGGGAAGCGCTTCA----CTGCT----TGAAACTTTTGTATTGGAAACAGAATTGACACCTGAGTAATGAATAATACATGGGATAGGAAGATGTTTCTTAGCCATAGGATTTAACCGATCTGTTTTCCACAGCTATTTTTGTTTGAAATGCCCTTAAAAGTTTTAGTAACTTTAGAAAGGAAGAGTTTTTGGAG--TGTGAAAACTT------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70924137 260 + 121039945 ATGGAAGCCTTGTGCTCACAGGTTTTACCCTTATCTTGTTGAGGATGGCTCTCCCAGCTGGAGTGGGAAGCGCTCCA----CTACT----TGAGAATTTTGTATTGGGAGCAGAATTGACACCTGGGTAATGAGTAATATATGGGATAGGAAGATGTTTCTCAGCCATAGGATTTAACAGATCTGTTTTCCATAGCTATTTTTGTTTGAAATGCCTTTAAAAGTTTTAGTAACTTTAGAAAAGAAGAGTTTTTGGAG--TGTGAAAACTT------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164227624 259 - 169600520 ATGGAAGCCTTGTGCTCACAGGTTTTACCCTTATCTTGTTGAGGATGGCTCTCCCAGCTGGAGTGGAAAGGGCTCCA----CTACT----TGAGACTTTTGTATTGGAAATGGAATTGACACCTTGGTAATGAATAATATGTGGGGTAGGAAGATATTTCTTAGCCATAGGATTTAACAGATCTGTTTTCCACAGCTAATTTTGTTTGAAATGCCCTTGAAAGTGTTAGTAAC-TTAGAAAGGAAGAGTTTTTGGAG--TATGAAAACTT------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165547933 259 - 171882078 ATGGAAGCCTTGTGCTCACAGGTTTTACCCTTATCTTGTTGAGGATGGCTCTCCCAGCTGGAGTGGAAAGGGCTCCA----CTACT----TGAGACTTTTGTATTGGAAATGGAATTGACACCTTGGTAATGAATAATATGTGGGGTAGGAAGATATTTCTTAGCCATAGGATTTAACAGATCTGTTTTCCACAGCTAATTTTGTTTGAAATGCCCTTGAAAGTGTTAGTAAC-TTAGAAAGGAAGAGTTTTTGGAG--TATGAAAACTT------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       389715 259 +   2379783 ATGGAAGCCTTGTGCTCACAGGTTTTACCCTTATCTTGTTGAGGATGGCTCTCCCAGCTGGAGTGGAAAGGGCTCCA----CTACT----TGAGACTTTTGTATTGGAAATGGAATTGACACCTTGGTAATGAATAATACGTGGGGTAGGAAGATATTTCTTAGCCATAGGATTTAACAGATCTGTTTTCCACAGCTAATTTTGTTTGAAATGCCCTTGAAAGTGTTAGTAAC-TTAGAAAGGAAGAGTTTTTGGAG--TATGAAAACTT------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       363793 259 +   4116138 ATGGAAGCCTTGTGCTCACAGGTTTTACCCTTATCTTGTTGAGGATGGCTCTCCCAGCTGGAGTGGAAAGGGCTTCA----CTACT----TGAGACTTTTGTATTGGAAATGGAATTGACACCTTGGTAATGAATAATACGTGGGGTAGGAAGATATTCCTTAGCCATAGGATTTAACAGATCTGTTTTCCACAGCTAATTTTGTTTGAAATGCCCTTGAAAGTGTTAGTAGC-TTAGAAAGGAAGAGTTTTTGGAG--TATGAAAACTT------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53795345 257 +  58131712 ATGGAAGCCTTGTGTTCACAGGTTTTACCCTTGTCTTGTTGAGGATGGCTCTCCCAGCTGGAGTGGAAAGGGCTCCA----CTACT----TGAGACGTTTGTATTGGAAATGGAATTGACACCTTGGTAATGAATAATACGTGGGGTAGGAAGATATTTCTTAGCCATAGGATTTAACAGGTCTGTTTTCCACAGCTAATTTTGTTTGAAATGCCCTTGAAAGTTTTAGTAAC-TTAGAAAGGAAGAGTTTTTGGAG--TATGAAAAC--------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       411285 259 -   3636681 ATGGAAGCCTTGTGCTCACAGGTTTTACCCTTATCTTGTTGAGGATGGCTCTCCCAGCTGGAGTGGAAAGGGCTCCA----CTACT----TGAGACTTTTGTATTGGAAATGGAATTGACACCTTGGTAATGAATAATACGTGGGGTAGGAAGATATTTCTTAGCCATAGGATTTAACAGATCTGTTTTCCACAGCTAATTTTGTTTGAAATGCCCTTGAAAGTGTTAGTAAC-TTAGAAAGGAAGAGTTTTTGGAG--TATGAAAACTT------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       389431 259 -   4457520 ATGGAATCCTTGTGGTCACAGGTTTTACCCTTATCTTGTTGAGGATGGCTCTCCCAGCTGGAGTGGAAAGCGCTCCA----CTACT----TGAGACTTTTGTATTGGAAATGGAATTGACACCTTGGTAATTAATAATATGTGGGGTAGGAAGGTATTTCTTAGCCATAGGAGTTAACAGATCTGTTTTCCACAGCTAATTTTGTTTGAAATGCCCTTGAAAGTTTTAGTAAC-TTAGAAAGGAAGAGTTTTTGGAG--TATGACAACTT------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55204828 259 + 190850796 ATGGAAACCTTGTGCTCACAGGTTTTACCCTTATTTTGTTGAGGATGACTCTCCCACCTGGAGTGGGAAGTGCTCCA----CTACT----TCAGACTTTTGTACTGGAAACAGAGTTGACACTTGGTTAATGAATAATACATGGAGTAGAAAGATGTTTCTTAGCCATAGGATTGATCAAATCTGTTTTCTACAGCTATTTTTGTTTGAAATGCCCTTGAAAGTCTTAGTAACTTTAGAAAGGAAGGA-TTTTGGAG--TGTGAAAACTT------
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       285105 259 -   2086007 ATGGAAACCTTGTGCTCACAGGTTTTACCCTTATCTTGTGGAGGATGACTCTTCCACCTGGAGTGGGAAGCACTCCA----CTATT----TCAGACTTTTGTATTGGAAATGGAGTTGACACCTGGTTAATGAATAATACATGGGGTAGAAAGATGTTTCTTAGCCATAGGATTGATCAGATCTGTTTTCTACAGCTAGTTTTGTTTGAAATGCCCTTGAAAGTTTTAGTAACTTTAGAAAGGAAGAG-TTTTGGAG--TGTGAAAACTT------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       350111 259 +   3831555 ATGGAAACCTTGTGCTCACAGGTTTTACCCTTATCTTGTTGAGGATGACTCTCCCACCTGGAGTGGAAAGCACTCCA----CTACT----TCAGACTTTTGTATTGGAAACAGAGTTGACACCTGCTTAATGAATAATACATGGGGTAGAAAGATGTTTCTTAGCCATAGGATTGATCAGATCTGTTTTCTACAGCTGTTTTTGTTTGAAATACCCTTGAAAGTTTTAGTAACTTTAGAAAGGAAGAG-TTTTGGAG--TGTGAAAACTT------
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116197134 261 + 116334831 ATGGAAGCCTTGTGCTGACAGGCTGTAACCTTATCTT---GGGGATGGCTCTCCCACCTGGAGTGGGAAGCCCCCCATTCCTTACT----TAGGACTTTTGTATTGGAAATGGAATTGACACCTGGTTAATGAATAATATGTGGGGTAGAAGCTTGTTTCTTAGCCATAGGATTTAGCAGATATATTTTCTATAGCTATTTTTGGTTGAAATGGCCTTGAAATTTTTAGTAACTTTAGAGAGGAAAAGTTTTTGGAG--TGTGAAAACTT------
i micMur3.chr9              I 617 I 197
s proCoq1.NW_012148396v1     13425244 261 +  16154928 ATGGAAGCCTTGTGTTGACAGGCTGTACCCTTATCTT---GGGGATGGCTCTCCCACCTGGAGTGGGAAGCACCCCATTCCTTACT----TAGGGCTTTTGTATTGGAAACAAAATTGACACCTGGTTAATGAATAATATGTGGGGTAGGAGGATGTTTCTTAGCCATGGGATTTAGCAAATATATTTTCTATAGCTATTTTTGGTTGAAATGGCCTTGAAATTTTTAGTAACTTTAGAGAGGAAAAGTTTTTGGAA--TGTGATAACTT------
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59925670 268 -  91889043 ATGCAAGCCTTATACT-ACAGGTTTTACCCTTACCCAATTGGGGATGTCTCTCCCAACTGGAACGGGAAGTGTCCCA----TTCCTTAGGTAGGGCTTATGT-TTGTGAACAGAATTGACACCTGCTTAATTTATATTATGTGGG-TAGAAACATGTTTCTTAACC-TTGGATTTAGCAGATCAATTTTCTATGGCTATTTTTGCTTGAAAAGCCCGTGAAGGTTTTGGTGACTTTAGAAAGGAAATATTTTTGGAGGCTGTGAAAACATGTGTTT
i canFam3.chr3              C 0 C 0
e otoGar3.GL873689             347683 200 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=209312.000000
s hg38.chr15_KI270851v1_alt    141833 23 +    263054 ATAATGCTTGTGTG----TTATAGAGA
s panTro5.chr15              73715879 23 -  83230942 ATAATGCTTGTGTG----TTATAGAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74019588 23 -  99763055 ACAATGCTTGTGTG----TTATAGAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        68324 23 -    281578 TTAATGTTTGTGTG----TTATAGAGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70924397 23 + 121039945 TTAATGCTTGTGTG----TTATAGAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164227883 23 - 169600520 TTAATGCTCATGTG----TTACAGAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165548192 23 - 171882078 TTAATGCTCATGTG----TTACAGAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       389974 23 +   2379783 TTAATGCTCATGTG----TTACAGAGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       364052 23 +   4116138 TTAATGCTCATGTG----TTACAGAGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53795602 23 +  58131712 TTAATGCTCATGTG----TTACAGAGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       411544 23 -   3636681 TTAATGCTCATGTG----TTACAGAGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       389690 23 -   4457520 TTAATGCTCATGTA----TTACAGAGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55205087 23 + 190850796 TTATTGCTTGTGTA----TTATAGAGA
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       285364 23 -   2086007 TTATTGCTTATGTA----TTACAGAGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       350370 23 +   3831555 GTATTGCTTGTGTG----TTATAGAGA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13425505 23 +  16154928 TTAATGTGTGTGTA----TTATAGAGA
i proCoq1.NW_012148396v1    C 0 I 416
s canFam3.chr3               59925938 25 -  91889043 --ATTACACATGTGTATATTATAAAGA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116197395 197 + 116334831 I
e otoGar3.GL873689             347683 200 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=35007.000000
s hg38.chr15_KI270851v1_alt    141856  6 +    263054 ------GCACTT---
s panTro5.chr15              73715902  6 -  83230942 ------GCACTT---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74019611  6 -  99763055 ------GCACTT---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        68347  6 -    281578 ------GCACTT---
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70924420  6 + 121039945 ------GCACTT---
i nomLeu3.chr6              C 0 I 3
s rheMac8.chr7              164227906  6 - 169600520 ------GCACTT---
i rheMac8.chr7              C 0 I 3
s macFas5.chr7              165548215  6 - 171882078 ------GCACTT---
i macFas5.chr7              C 0 I 3
s macNem1.NW_012011934v1       389997  6 +   2379783 ------ACACTT---
i macNem1.NW_012011934v1    C 0 I 3
s cerAty1.NW_012001462v1       364075  6 +   4116138 ------GCACTT---
i cerAty1.NW_012001462v1    C 0 I 3
s chlSab2.chr26              53795625  6 +  58131712 ------GCACTT---
i chlSab2.chr26             C 0 I 3
s manLeu1.NW_012102332v1       411567  4 -   3636681 ------GCAC-----
i manLeu1.NW_012102332v1    C 0 I 3
s colAng1.NW_012115278v1       389713  6 -   4457520 ------GCACtt---
i colAng1.NW_012115278v1    C 0 I 1660
s calJac3.chr3               55205110  6 + 190850796 ------GCACTG---
i calJac3.chr3              C 0 I 3
s cebCap1.NW_016107707v1       285387  6 -   2086007 ------GCACTG---
i cebCap1.NW_016107707v1    C 0 I 3
s aotNan1.NW_018503298v1       350393  6 +   3831555 ------GCACTG---
i aotNan1.NW_018503298v1    C 0 I 3
s canFam3.chr3               59925963 15 -  91889043 ACACAGACGCTGATC
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116197395 197 + 116334831 I
e proCoq1.NW_012148396v1     13425528 416 +  16154928 I
e otoGar3.GL873689             347683 200 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=977396.000000
s hg38.chr15_KI270851v1_alt    141862 128 +    263054 ATTGAC-TTCTTTATCATAGACATTATTTGGATACGTCAGGCCTAGGACCCTACATCCAGCAACCTCTAATGCAGGGCTCATTTTATGCCAGGCATATATATCTGGTTATTACATATAAACAGTTTAAT
s panTro5.chr15              73715908 128 -  83230942 ATTGAC-TTCTTTATCATAGACATTATTTGGATACGTCAGGCCTAGGACCCTACATCCAGCAACCTCTAATGCAGGGCTCATTTTATGCCAGGCATATATATCTGGTTATTACATATAAACAGTTTAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74019617 128 -  99763055 ATTGAC-TTCTTTATCATAGACATTATTTGGATACGTCAGGCCTAGGACCCTACATCCAGCAACCTCTAATGCAGGGCTCATTTTATGCCAGGCATATATATCTGGTTATTACATATAAACAGTTTAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        68353 128 -    281578 ATTGAC-TTCTTTATCATAGACATTATTTGGATACGTCAGGCCTAGGACCCTACATCCAGCAACCTCTAATGCAGGGCTCATTTTATGCCAGGCATATATATCTGGTTATTACATATAAACAGTTTAAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70924429 128 + 121039945 ATCGAC-TTCTTGATCATAGACATTATTTGGATACGTCAGGCCTAGGACCCTACATCCAGCAACCTCTAACGCGGCGCTCTTTTTATGCCAGGCATATATATCTGGTTATTACATATAAACAGTTTAAT
i nomLeu3.chr6              I 3 C 0
s rheMac8.chr7              164227915 128 - 169600520 ATCGAC-TTTTTGATCATAGACATTATTTGGATGCGTCAGGCCTAGGACTCTACATCCAGCAACCTCTCACACAGGGCTCATTTTATGCCAGGCATATATATCTGGTTATTACATATAAACAATTTAAT
i rheMac8.chr7              I 3 C 0
s macFas5.chr7              165548224 128 - 171882078 ATCGAC-TTCTTGATCATAGACATTATTTGGATGCGTCAGGCCTAGGACTCTACATCCAGCAACCTCTCACACAGGGCTCATTTTATGCCAGGCATATATATCTGGTTATTACATATAAACAATTTAAT
i macFas5.chr7              I 3 C 0
s macNem1.NW_012011934v1       390006 128 +   2379783 ATCGAC-TTCTTGATCATAGACATTATTTGGATGCGTCAGGCCTAGGACTCTACATCCAGCAACCTCTCACACAGGGCTCATTTTATGCCAGGCATATATATCTGGTTATTACATATAAACAATTTAAT
i macNem1.NW_012011934v1    I 3 C 0
s cerAty1.NW_012001462v1       364084 126 +   4116138 ATCGAC-TTCTTGATCATAGACATTATTTGGATGCGTCAGGCCTAGGACTCTACATCCAGCAAC--CTCACACAGGGCTCATTTTATGCCAGGCATATATATCTGGTTATTACATATAAACAATTTAAT
i cerAty1.NW_012001462v1    I 3 C 0
s chlSab2.chr26              53795634 128 +  58131712 ATCGAC-TTCTTGATCATAGACATTATTTGGATGCGTCAGGCCTAGGACTCTACATCCAGCAACATCTCACACAGGGCTCATTTTATGCCAGGCATATATATCTGGTTATTACATATAAACAATTTAAT
i chlSab2.chr26             I 3 C 0
s manLeu1.NW_012102332v1       411574 126 -   3636681 ATCGAC-TTCTTGATCATAGACATTATTTGGATGCGTCAGGCCTAGGACTCTACATCCAGCAAC--CTCACACAGGGCTCATTTTATGCCAGGCATATATATCTGGTTATTACATATAAACAATTTAAT
i manLeu1.NW_012102332v1    I 3 C 0
s calJac3.chr3               55205119 127 + 190850796 ATCAGC-TGCTTGATTGTCGACATTATTTGGATGCATCAGGCCTAGGAACCTACATTCAGCAACCTCTAACGGA-GGCTCATTTTATGCCAGGCCTATGTATCTGGTTTTTACATATAAACAGTTTAAT
i calJac3.chr3              I 3 C 0
s cebCap1.NW_016107707v1       285396 128 -   2086007 ATCAGC-TTTTTGATTATCGACATTATTTGGATGCATCAGGCCTAGGAACCTACATTCAGCAACCTCTAATGGAGGGTTCATTTTATGCCAGGCATATGTATCTGGTTTTTACGTATAAACAGTTTAAT
i cebCap1.NW_016107707v1    I 3 C 0
s aotNan1.NW_018503298v1       350402 128 +   3831555 ATCGGC-TTCTTGATTGTCGACATTATTTGGATGCATCAGGCCTAGGAACCTACATTCAGCAACCTCTAATGGAGGGCTCATTTTATGCCAGGCATATGTATCTGGTTTTTAGATATAAACAGTTTAAT
i aotNan1.NW_018503298v1    I 3 C 0
s canFam3.chr3               59925978 117 -  91889043 GTAGACTTTCTTGTTTGTAGA---TGTTTAAATGTGTCAAGCCTAAGATGTTGGAACAAGCTGCCTCTAGTGGAGTGCCAATTATATGGCAGGCGTA--GATCTGTTtttttttt-------ttttaat
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116197395 197 + 116334831 I
e proCoq1.NW_012148396v1     13425528 416 +  16154928 I
e otoGar3.GL873689             347683 200 +   3845361 I
e colAng1.NW_012115278v1       389719 1660 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=61698.000000
s hg38.chr15_KI270851v1_alt    141990 10 +    263054 TGTTCAACAC
s panTro5.chr15              73716036 10 -  83230942 TGTTCACCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74019745 10 -  99763055 TGTACAATAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        68481 10 -    281578 TGTACAATAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70924557 10 + 121039945 TGTTCAACAC
i nomLeu3.chr6              C 0 I 3
s rheMac8.chr7              164228043 10 - 169600520 TGTTCAACAC
i rheMac8.chr7              C 0 I 10
s macFas5.chr7              165548352 10 - 171882078 TGTTCAACAC
i macFas5.chr7              C 0 I 10
s macNem1.NW_012011934v1       390134 10 +   2379783 TGTTCAACAC
i macNem1.NW_012011934v1    C 0 I 12
s cerAty1.NW_012001462v1       364210 10 +   4116138 TGTTCAACAC
i cerAty1.NW_012001462v1    C 0 I 9
s chlSab2.chr26              53795762 10 +  58131712 TGTTCAACAC
i chlSab2.chr26             C 0 I 11
s manLeu1.NW_012102332v1       411700 10 -   3636681 TGTTCAACAC
i manLeu1.NW_012102332v1    C 0 I 9
s cebCap1.NW_016107707v1       285524 10 -   2086007 TGTTCAACAC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       350530 10 +   3831555 TGTTCAACAC
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59926095 10 -  91889043 taaaaaaaat
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116197395 197 + 116334831 I
e proCoq1.NW_012148396v1     13425528 416 +  16154928 I
e otoGar3.GL873689             347683 200 +   3845361 I
e colAng1.NW_012115278v1       389719 1660 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55205246  0 + 190850796 C

a score=32438.000000
s hg38.chr15_KI270851v1_alt    142000 5 +    263054 ttttt
s panTro5.chr15              73716046 5 -  83230942 ttttt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        68491 1 -    281578 ----t
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70924570 5 + 121039945 ttttt
i nomLeu3.chr6              I 3 C 0
s rheMac8.chr7              164228063 5 - 169600520 ttttt
i rheMac8.chr7              I 10 C 0
s macFas5.chr7              165548372 5 - 171882078 ttttt
i macFas5.chr7              I 10 C 0
s macNem1.NW_012011934v1       390156 5 +   2379783 ttttt
i macNem1.NW_012011934v1    I 12 C 0
s cerAty1.NW_012001462v1       364229 5 +   4116138 ttttt
i cerAty1.NW_012001462v1    I 9 C 0
s chlSab2.chr26              53795783 5 +  58131712 ttttt
i chlSab2.chr26             I 11 C 0
s manLeu1.NW_012102332v1       411719 5 -   3636681 ttttt
i manLeu1.NW_012102332v1    I 9 C 0
s cebCap1.NW_016107707v1       285534 5 -   2086007 TCTTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       350540 5 +   3831555 TCTTT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             347883 5 +   3845361 ttttt
i otoGar3.GL873689          I 200 C 0
s canFam3.chr3               59926105 5 -  91889043 ttttt
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116197395 197 + 116334831 I
e proCoq1.NW_012148396v1     13425528 416 +  16154928 I
e panPan2.chr15              74019755 0 -  99763055 C
e colAng1.NW_012115278v1       389719 1660 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55205246 0 + 190850796 C

a score=8281.000000
s hg38.chr15_KI270851v1_alt    142005 1 +    263054 t
s panTro5.chr15              73716051 1 -  83230942 t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74019755 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        68492 1 -    281578 t
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70924575 1 + 121039945 t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164228068 1 - 169600520 t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165548377 1 - 171882078 t
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       390161 1 +   2379783 t
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       364234 1 +   4116138 t
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53795788 1 +  58131712 t
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       411724 1 -   3636681 t
i manLeu1.NW_012102332v1    C 0 C 0
s cebCap1.NW_016107707v1       285539 1 -   2086007 T
i cebCap1.NW_016107707v1    C 0 I 7
s otoGar3.GL873689             347888 1 +   3845361 t
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59926110 1 -  91889043 t
i canFam3.chr3              C 0 I 100
e micMur3.chr9              116197395 197 + 116334831 I
e proCoq1.NW_012148396v1     13425528 416 +  16154928 I
e aotNan1.NW_018503298v1       350545 0 +   3831555 C
e colAng1.NW_012115278v1       389719 1660 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55205246 0 + 190850796 C

a score=567975.000000
s hg38.chr15_KI270851v1_alt    142006 123 +    263054 tttttttttttgagac----ggagtctcactctgtctcccaggctggagtgcagtggtgccatcttggctcactgcaa-----gcctcctgggttcatgccattctcctgcctcagcctcccgag-----------tagctgg
s panTro5.chr15              73716052 121 -  83230942 tttttttttttgagac----ggagtctcactctgtctcccaggctggagtgcagtgatgccatgttggctcactgcaa-----gcctcctgggttcatgccattctcctgcctcagcct-ccgag------------agctgg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74019756 121 -  99763055 Cttttttttttgagac----ggagtctcactctgtctcccaggctggagtgcagtgatgccatgttggctcactgcaa-----gcctcctgggttcatgccattctcctgcctcagcct-ccgag------------agctgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        68493 121 -    281578 tctttttttttgagat----ggagtctcactctgtctcccaggctggagtgcagtggtgccatcttggctcactgcaa-----gcctcctgggttcatgccattctcctgcctcagcct-ccgag------------agctgg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70924576 128 + 121039945 tttttttttttgagac----ggagtctcactgtgtctcccaggctggagtgcagtggtgccatcttggctcactgcaagctgtgcctcctgggttcacgccattctcctgcctcagcctcccgag-----------tagctgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164228069 131 - 169600520 tttttttttttgagacggagggagtctcgctctgtcacctaggctggagtgcagtggtgccat-ttggcttactgcaagctctccctcctgggttcccgccattctccctccttagcctcccgag-----------tagctgg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165548378 131 - 171882078 tttttttttttgagacggagggagtctcgctctgtcacctaggctggagtgcagtggtgccat-ttggcttactgcaagctctccctcctgggttcccgccattctccctccttagcctcccgag-----------tagctgg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       390162 131 +   2379783 tttttttttttgagacggagggagtctcgctctgtcacctaggctggagtgcagtggtgccat-ttggcttactgcaaactctccctcctgggttcccgccattctccctcctcagcctcccgag-----------tagctgg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       364235 131 +   4116138 tttttttttttgagacggagggagtctcgctctgtcacctaggctggagtgcagtggtgccat-ttggcttactgcaagctctccctcctgggttcccgccattctccctcctcagcctcccgag-----------tagctgg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53795789 131 +  58131712 tttttttttttgagacagagggagtctcgctctgtcacctaggctggagtgcagtggtgccat-ttagcttactgcaagctctccctcctgggttcccaccattctccctcctcagcctcccgag-----------tagctgg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       411725 131 -   3636681 tttttttttttgagacggagggagtctcgctctgtcacctaggctggagtgcagtggtgccat-ttggcttactgcaagctctccctcctgggttcctgccattctccctcctcagcctcccaag-----------tagctgg
i manLeu1.NW_012102332v1    C 0 C 0
s otoGar3.GL873689             347889 136 +   3845361 ttttttttttagaggc----agaatctcactttgtcgatcttggtagagtgctgtggcgccat---agttcataacaacatccaggtcttgggtttaggggattctcttgcctcagcctcccgagtggaggctttgttgttgt
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116197395 197 + 116334831 I
e proCoq1.NW_012148396v1     13425528 416 +  16154928 I
e canFam3.chr3               59926111 100 -  91889043 I
e aotNan1.NW_018503298v1       350545   0 +   3831555 C
e cebCap1.NW_016107707v1       285540   7 -   2086007 I
e colAng1.NW_012115278v1       389719 1660 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55205246   0 + 190850796 C

a score=646884.000000
s hg38.chr15_KI270851v1_alt    142129 166 +    263054 gactacgggt---gtccaccaccacgcctggctaattttgtgtacttttagtag----agacagggttc--------caccatgtgggccaggctggt-tttgaactcctgacctcaagtgatccaccc---gcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc
s panTro5.chr15              73716173 166 -  83230942 gactacgggt---gtacaccactacgcctggctaattttgtgtacttttagtag----agacagggctc--------caccatgtgggccaggttggt-tttgaactcctgacctcaagtgatccaccc---gtcttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74019877 166 -  99763055 gactacgggt---gtacaccactacgcctggctaattttgtgtacttttagtag----agacagggctc--------caccatgtgggtcaggttggt-tttgaactcctgacctcaagtgatccaccc---gtcttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        68614 166 -    281578 gactacaggt---gtccaccactacgcctggctaattttgtgtacttttagtag----agacagggttc--------caccatgtaggccaggttggt-tctgaactcctgacctcaagtgatccaccc---gcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70924704 163 + 121039945 gattacaagc---gcacaccatcacgcctggctg---ttttgtatttttagtac----agacagggttt--------caccatgtgggccaggctggc-tttgaactcctgacctcaagtgatctaccc---gcctcagcctcccaaagtgctgggattataggtgtgagccaccgtgcccagcc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164228200 164 - 169600520 gactacaggc---gcccgccactatgcccagctcattttgtgtagttttagtag----agacggggttt--------caccatgttagccaggatggt-ttcgatctcctgacctc--gtgatctgccc---gcctcagcctcccaaagtgctaggattacaggcgtgagccaccacgcccagcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165548509 164 - 171882078 gactacaggc---gcccgccactatgcccagctcattttgtgtagttttagtag----agacggggttt--------caccatgttagccaggatggt-ttcgatctcctgacctc--gtgatctgccc---gcctcagcctcccaaagtgctaggattacaggcgtgagccaccacgcccagcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       390293 164 +   2379783 gactacaggc---gcccgccactatgcccagctcattttatgtagttttagtag----agacggggttt--------caccatgttagccaggatggt-ttcgatctcctgacctc--gtgatctgccc---gccttggccacccaaagtgctaggattacaggcgtgagccaccacgcccagcc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       364366 167 +   4116138 gactacaggcgtggcccgccactatgcccagctcattttgtgtagttttagtag----agatggggttt--------caccatgttagccaggatggt-ctcgatctcctgacctc--gtgatctgccc---gcctcggcctcccaaagtgctaggattacaggcgtgagccaccacgcccagcc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53795920 164 +  58131712 gactacaggc---gcccgccactatgcccagctcattttgtgtagttttagtag----agacggggttt--------caccatgttagccaggatggt-ctcgatctcctgacctc--gtgatctgccc---gcctcggcttcccaaagtgctaggattacaggcatgagccaccacgcccagcc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       411856 164 -   3636681 gactacaggc---gcccgccactatgcccagctcattttgtgtagttttagtag----agacggggttt--------caccatgttagccaggatggt-ctcaatctcctgacctc--gtgatctgcct---gcctcggcctcccaaagtgctaggattacaggcgtgagccaccacgcccagcc
i manLeu1.NW_012102332v1    C 0 C 0
s otoGar3.GL873689             348025 155 +   3845361 tgttgcagtt---g------------------taat----tgttgttttagctgggctggactgggttcgaacccaacagcatgtgtatgtggtcagcgccctacccactgagcta-tgggtgccACCCTTATCCTTGACTTTTTGA--TGGTAGGCCTTTAGG--TGAGTCCCTGCAACCACCA
i otoGar3.GL873689          C 0 I 67
s canFam3.chr3               59926211 109 -  91889043 gatcccgggt---ctccaggatcacgccctgggc-----------------caa----aggcaggcgccaaac----cgctgcgccacccagg--gat-c------------ccCC--GTA---TATCT---GTTTT--------------------TTACATATATAATGCTTTTTACT-----
i canFam3.chr3              I 100 C 0
e micMur3.chr9              116197395 197 + 116334831 I
e proCoq1.NW_012148396v1     13425528 416 +  16154928 I
e aotNan1.NW_018503298v1       350545   0 +   3831555 C
e cebCap1.NW_016107707v1       285540   7 -   2086007 I
e colAng1.NW_012115278v1       389719 1660 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55205246   0 + 190850796 C

a score=86936.000000
s hg38.chr15_KI270851v1_alt    142295 15 +    263054 TGTTCAACACTCTTT
s panTro5.chr15              73716339 13 -  83230942 TGTTCAACA--CTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74020043 13 -  99763055 TGTTCAACA--CTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        68780 13 -    281578 TGTTCAACA--CTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70924867 15 + 121039945 TGTTCAACACTCTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164228364 15 - 169600520 TGTTCAACACTCTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165548673 15 - 171882078 TGTTCAACACTCTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       390457 15 +   2379783 TGTTCAACACTCTTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       364533 15 +   4116138 TGTTCAACACTCTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53796084 15 +  58131712 TGTTCAACACTCTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       412020 15 -   3636681 TGTTCAACACTCTTT
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr3               55205246 15 + 190850796 TATTCAACACTCTTT
i calJac3.chr3              C 0 C 0
s otoGar3.GL873689             348247 13 +   3845361 TTCTCATCACTCT--
i otoGar3.GL873689          I 67 C 0
s canFam3.chr3               59926320 15 -  91889043 TTTTCAACACTCTTT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116197395 197 + 116334831 I
e proCoq1.NW_012148396v1     13425528 416 +  16154928 I
e aotNan1.NW_018503298v1       350545  0 +   3831555 C
e cebCap1.NW_016107707v1       285540  7 -   2086007 I
e colAng1.NW_012115278v1       389719 1660 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=67223.000000
s hg38.chr15_KI270851v1_alt    142310 9 +    263054 TCTGCTTGA
s panTro5.chr15              73716352 9 -  83230942 TCTGCTTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74020056 9 -  99763055 TCTGCTTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        68793 9 -    281578 TCTGCTTGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70924882 9 + 121039945 TCTGCTTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164228379 9 - 169600520 TCTGCTTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165548688 9 - 171882078 TCTGCTTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       390472 9 +   2379783 TCTGCTTGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       364548 9 +   4116138 TCTGCTTGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53796099 9 +  58131712 TCTGCTTGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       412035 9 -   3636681 TCTGCTTGT
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr3               55205261 9 + 190850796 TCTGCTTGG
i calJac3.chr3              C 0 C 0
s aotNan1.NW_018503298v1       350545 9 +   3831555 TCTGCTTGG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             348260 9 +   3845361 TCTAATTGT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59926335 9 -  91889043 TCAGATTGT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116197395 197 + 116334831 I
e proCoq1.NW_012148396v1     13425528 416 +  16154928 I
e cebCap1.NW_016107707v1       285540 7 -   2086007 I
e colAng1.NW_012115278v1       389719 1660 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=82424.000000
s hg38.chr15_KI270851v1_alt    142319 12 +    263054 TG---TGTGGAGTGA-
s panTro5.chr15              73716361 12 -  83230942 TG---TGTGGAGTTA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74020065 12 -  99763055 TG---TGTGGAGTTA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        68802 12 -    281578 TG---TGTGGAGTGA-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70924891 15 + 121039945 TGGAATTCCACGTTA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164228388 12 - 169600520 TG---TTTGGAGTTA-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165548697 12 - 171882078 TG---TTTGGAGTTA-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       390481 12 +   2379783 TG---TTTGGAGTTA-
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       364557 12 +   4116138 TG---TTTGGAGTTA-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53796108 12 +  58131712 TG---TTTGGAGTTA-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       412044 12 -   3636681 TG---TTTGGAGTTA-
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr3               55205270 12 + 190850796 TG---TGTGGAGTTA-
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       285547 12 -   2086007 TG---TGTGGAGTTA-
i cebCap1.NW_016107707v1    I 7 C 0
s aotNan1.NW_018503298v1       350554 12 +   3831555 TG---TGTGGAGTTA-
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             348269 12 +   3845361 TA---TGTGGTGTTA-
i otoGar3.GL873689          C 0 I 1
s canFam3.chr3               59926344 13 -  91889043 TG---TGTGGAGTACG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116197395 197 + 116334831 I
e proCoq1.NW_012148396v1     13425528 416 +  16154928 I
e colAng1.NW_012115278v1       389719 1660 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=1469338.000000
s hg38.chr15_KI270851v1_alt    142331 155 +    263054 TTGAATCACCATGTTTTCCTTCACTGCTCTCGTGAAGA-GTAAT-ACATTACAGAGGTAAGA-GGTGTCAGTCACATCACTTTTTATTTTTACCGTGAAAGTActtctaatctgatgtgattggtagttttttagcaaaccaaaaagtcagttaagca
s panTro5.chr15              73716373 155 -  83230942 TTGAATCACCATGTTTTCCTTCACTGCTCTCGTGAAGA-ATAAT-ACGTTACAGAGCTAAGA-GGTGTCAGTCACATCACTTTTTATTTTTAcagttaaagtacttctaatctgatgtgattggtagttttttagcaaaccaaaaagtcagttaagca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74020077 155 -  99763055 TTGAATCACCATGTTTTCCTTCACTGCTCTTGTGAAGA-ATAAT-ACGTTACAGAGCTAAGA-GGTGTCAGTCACATCACTTTTTATTTTTAcagttaaagtacttctaatctgatgtgattggtagttttttagcaaaccaaaaagtcagttaagca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        68814 155 -    281578 TTGAATCACCATGTTTTCCTTCACTGCTCTCGTGAAGA-GTAAT-ACGTTACAGAGCTAAGA-GGTGTCAGTCACATCACTTTTTATTTTTAcagtaaaagtacttctaatctgatgtgattggtagttttttagcaaaccaaaaagtcagttaagca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70924906 152 + 121039945 TTGAATCACCATGTTTTCCTTCACTGCTCTCGTGAAGA-GTAAT-ACATTACAGAGCTAAGA-GGTGTCAGTCACATCACTTTTTATTTTTAcagtaaaagta---ctaatctgatgtgattggtagttttttagcaaaccaaaaagtcagttaagca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164228400 155 - 169600520 TTGAATCACCATGTTTTCCTTCGCTGCTCTCGTGAAGG-GTAAT-ACATTACAGAGCTAAGA-GGTGTTAGTCACATCACTTTTTATTTTTAcagtaagagtacttttaatctgatgtgattggtagttttttagcaaaccaaaaagtcatttaagca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165548709 155 - 171882078 TTGAATCACCATGTTTTCCTTCGCTGCTCTCGTGAAGA-GTAAT-ACATTACAGAGCTAAGA-GGTGTTAGTCACATCACTTTTTATTTTTAcagtaagagtacttttaatctgatgtgattggtagttttttagcaaaccaaaaagtcatttaagca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       390493 155 +   2379783 TTGAATCACCATATTTTCCTTCGCTGCTCTCGTGAAGA-GTAAT-ACATTACAGAGCTAAGA-GGTGTTAGTCACATCACTTTTTATTTTTAcagtaagagtacttttaatctgatgtgattggtagttttttagcaaaccaaaaagtcatttaagca
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       364569 155 +   4116138 TTGAATCACCATGTTTTCTTTCGCTGCTCTCGTGAAGA-GTAAT-ACATTACAGAGCTAAGA-GGTGTTAGTCACATCACTTTTTATTTTTAcagtaagagtacttttaatctgatgtgattggtagttttttagcaaaccaaaaagtcatttaagca
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53796120 155 +  58131712 TTGAATCACCATGTTTTCCTTCGCTGCTCTCATGAAGA-GTAAT-ACATTACAGAGCTAAGA-GATGTTAGTCACATCACTTTTTATTTTTAcagtaagagtacttttaatctgatgtgattggtagttttttagcaaaccaaaaagtcatttaagca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       412056 155 -   3636681 TTGAATCACCATGTTTTCCTTCGCTGCTCTCGTGAAGA-GTAAT-ACATTACAGAGCTAAAA-GGTGTTGGTCACATCACTTTTTATTTTTAcagtaagagtacttttaatctgatgtgattggtagttttttagcaaaccaaaaagtcatttaagca
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr3               55205282 155 + 190850796 TTGAATCACCATGTTTTCCTTCATGACCCTTGTGAAGA-GCAAT-CAATTATAGCGCTAAGA-GGAGTTGGCCACATCACTTTTTATTTTTAcagtaaaagtacttctaatccgacgtgtttggtagttctttagcaagccaaaaagtcagttaagca
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       285559 155 -   2086007 TTGAATCTCTGTATTTTCCTTCATGACCCTTGTGAAGA-GCAAT-CAATTATAGCGCTAAGA-GATGTTAGCCACATCACTTTTTATTTTTAcagtaaaagtacttctaatccgacgtgtttggtagttttttagcaagccaaaaagtcagttaagca
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       350566 155 +   3831555 TTGAATCACCGTGTTTTCCTTCGTGACCCTTGTGAAGA-GCAAT-CAATTATAGCGCTAAGA-GGTGTTAGCCACATCACTTTTTATTTTTAcagtaaaagtacttctaatccaacgtgtttggtagttttttagcaagccaaaaagtcagttaagca
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116197592 150 + 116334831 TTGAATCACCATGTTTTCCTTCACTACTTTCTTGAAGAGGCAAT-AAAATACAGAGCTAAG---TT---AGCCACATCACTTTTTATTTTTATagtaaaagtacttct-atctgatgtgattggtagtttttcagtggaccaaaaagtcaaccaagca
i micMur3.chr9              I 197 I 96
s otoGar3.GL873689             348282 153 +   3845361 TTGAATCATCATGTTTTCCTTCACTACTTTCTTGAATAGGCAATAAAAATACAGAGCTGAGA-ATTGGGAGTTGCATCACTTCTTGTTTTTATAGTGGA---ATTCCT-GTCTGATGTGATTGCTAGTTTTTCAGTGAACCCAAAAGTCATTTAAGCA
i otoGar3.GL873689          I 1 I 1
s canFam3.chr3               59926357 150 -  91889043 TTGAATTGCCA---TTTCCTTTGCAACTGTCTTGAAGAGGCTAT-AAAAGGCAGAGCTAACATAATAACTGCTGTTACCATTTTAATATTTAAagtaaaagtcct----gtctgatgtgattggtagtttctcagtgaaccaaaaagtctattaagca
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13425528 416 +  16154928 I
e colAng1.NW_012115278v1       389719 1660 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=300433.000000
s hg38.chr15_KI270851v1_alt    142486 36 +    263054 aaggaatcataaaaaccaatatatgagaccttaaaa
s panTro5.chr15              73716528 36 -  83230942 aaggaaccataaaaaacaatatatgataccttaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74020232 36 -  99763055 aaggaaccataaaaaacaatatatgataccttaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        68969 36 -    281578 aaggaaccataaaaaagaatatatgataccttaaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70925058 36 + 121039945 aaggaaccataaaaaacagtacatgataccttaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164228555 36 - 169600520 aatgaaccataaaaaacagtgcatgataccttaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165548864 36 - 171882078 aatgaaccataaaaaacagtgcatgataccttaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       390648 36 +   2379783 aatgaaccataaaaaacagtgcatgataccttaaaa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       364724 36 +   4116138 aatgaaccgtaaaaaacagtgcatgataccttaaaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53796275 36 +  58131712 aaggaaccataaaaaacagtgcatgatactttaaaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       412211 36 -   3636681 aatgaaccataaaaaacagtgcatgataccttaaaa
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr3               55205437 36 + 190850796 aaggaactataaaaaacagtatttgataccttaaag
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       285714 36 -   2086007 aaggaactataaaaaacagtatttgataccttaaag
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       350721 36 +   3831555 aaggaactataaaaaacagtatttgatactttaaag
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             348436 36 +   3845361 TAAGAACTGTAAAAATTAATACACTGTATCTCAAAA
i otoGar3.GL873689          I 1 C 0
s canFam3.chr3               59926507 36 -  91889043 aaggaagtataaaaaatggtatatgatacattaaaa
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116197742 96 + 116334831 I
e proCoq1.NW_012148396v1     13425528 416 +  16154928 I
e colAng1.NW_012115278v1       389719 1660 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=139811.000000
s hg38.chr15_KI270851v1_alt    142522 13 +    263054 ----------------gctttttattctt
s panTro5.chr15              73716564 13 -  83230942 ----------------gctttttattctt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74020268 13 -  99763055 ----------------gctttttattctt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        69005 13 -    281578 ----------------gctttttattctt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70925094 13 + 121039945 ----------------gctttgtattctt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164228591 13 - 169600520 ----------------gctttttattctt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165548900 13 - 171882078 ----------------gctttttattctt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       390684 13 +   2379783 ----------------gctttttattctt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       364760 13 +   4116138 ----------------gctttttattctt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53796311 13 +  58131712 ----------------gctttttattctt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       412247 13 -   3636681 ----------------gctttttattctt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       391379 13 -   4457520 ----------------GCTttttattctt
i colAng1.NW_012115278v1    I 1660 C 0
s calJac3.chr3               55205473 13 + 190850796 ----------------gcttttgattctt
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       285750 13 -   2086007 ----------------gctttttattctt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       350757 13 +   3831555 ----------------gctttttattctt
i aotNan1.NW_018503298v1    C 0 I 433
s otoGar3.GL873689             348472 13 +   3845361 ----------------GTTTTTGGTTCTT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59926543 29 -  91889043 ggtatggtatatgatacctttttattctt
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116197742 96 + 116334831 I
e proCoq1.NW_012148396v1     13425528 416 +  16154928 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=326564.000000
s hg38.chr15_KI270851v1_alt    142535 42 +    263054 aaaacacat------gcctgttcgccagttttgttgtaaggtaaaggt
s panTro5.chr15              73716577 42 -  83230942 aaaacacat------gcctgttcgccagttttgttgtaaggtaaaggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74020281 42 -  99763055 aaaacacat------gcctgttcgccagttttgttgtaaggtaaaggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        69018 37 -    281578 aaaacacat------gcctgtttgccagttttgtt-----gtaaaggc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70925107 42 + 121039945 aaaacacat------gcctgtttgccagttttgttgtaaggtaaaggg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164228604 42 - 169600520 aaaacacat------gcccgtttgccagctttgttgtaaggtaaaggg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165548913 42 - 171882078 aaaacacat------gcccgtttgccagctttgttgtaaggtaaaggg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       390697 42 +   2379783 aaaacacat------gcccgtttgccagctttgttgtaaggtaaaggg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       364773 42 +   4116138 aaaacacat------gcccgtttgccagttttgttgtaaggtaaaggg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53796324 42 +  58131712 aaaacacat------gcccgtttgccagttttgttgtaaggtaaaggg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       412260 42 -   3636681 aaaacacat------gcccgtttgccagttttgttgtaaggtaaaggg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       391392 42 -   4457520 aaaacacat------gcccgtttgccagttttgttgtaaggtaaaggg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55205486 42 + 190850796 aaaacatat------gcctgtttgccagtcttgttgtaaggtaaaggg
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       285763 42 -   2086007 gaaacatat------gcttgtttggcagtcttgttgtaaggtaaaagg
i cebCap1.NW_016107707v1    C 0 C 0
s otoGar3.GL873689             348485 34 +   3845361 --AAGACAT------GAATATTTGC-----ttgatacaaggctgagg-
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59926572 47 -  91889043 aaattatatatgtacatttatttgctagtcttgatgtagggctaagg-
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116197742 96 + 116334831 I
e proCoq1.NW_012148396v1     13425528 416 +  16154928 I
e aotNan1.NW_018503298v1       350770 433 +   3831555 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=1444695.000000
s hg38.chr15_KI270851v1_alt    142577 151 +    263054 gcatgtctttgagcataggtcc-agaat-ggagttatcctgccccttcttgcataagctgcactcagatgaatttcctacagtttctatttttgggttcttttttaagtggcacatgaaactagatatgcatgaagcaatt---tTTAAAAaaact
s panTro5.chr15              73716619 151 -  83230942 gcatgtctttgagcataagtcc-agaat-ggagttatcctgccccttcttgcataagctgcactcagatgaatttcctacagtttctatttttgggttcttttttaagtggcacatgaaattagatatgcatgaagcaatt---ttttaaaaaact
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74020323 151 -  99763055 gcatgtctttgagcataagtcc-agaat-ggagttatcctgccccttcttgcataagctgcactcagatgaatttcctacagtttctatttttgggttcttttttaagtggcacatgaaattagatatgcatgaagcaatt---ttttaaaaaact
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        69055 150 -    281578 gcatgtctttgagcataggtcc-agaat-ggagttatcctgccccttcttgcataagctgcactcagatgaatttcctacagtttctatttttgggttcttttttaagtggcacatg-aatcagatatgcatgaaacaatt---ttttaaaaaact
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70925149 151 + 121039945 gcatgtctttgagcataggtcc-agaat-ggagttatcctgccctttcttgcataagctgcactcagatgaatttcctgcagtttctatttttgggttcttttttaagtggcacatgaaattagatatgcatgaagcaatt---ttttaaaaaact
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164228646 150 - 169600520 gcatgtctttgagcataggtcc-agaat-ggagttattctgccccttcttgcataagctgcactcagatgaatttcctacagtttatatttttgggttcatttttaagtggcacaggaaattagatatgcatgaagcaatt---tTTTTAAAGG-t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165548955 150 - 171882078 gcatgtctttgagcataggtcc-agaat-ggagttattctgccccttcttgcataagctgcactcagatgaatttcctacagtttatatttttgggttcatttttaagtggcacaggaaattagatatgcatgaagcaatt---tTTTTAAAGG-t
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       390739 150 +   2379783 gcatgtctttgagcataggtcc-agaat-ggagttattctgccccttcttgcataagctgcactcagatgaatttcctacagtttctatttttgggttcatttttaagtggcacaggaaattagatatgcatgaagcaatt---tTTTTAAAGG-t
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       364815 150 +   4116138 gcatgtctttgagcataggtcc-agaat-ggagttatcctgccccttcttgcataagctgcactcagatgaatttcctacagtttctatttttgggttcatttttaagtggcacaggaaattagatatgcatgaagcaatt---tTTTTAAAGG-t
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53796366 149 +  58131712 gcatgtctttgagcataggtcc-agaat-ggagtta-cctgccccttcctgcgtaagctgcactcagatgaatttcctacagtttctatttttgggttcatttttaagtggcacaggaaattagatatgcatgaagcaatt---tTTTAAAAGG-t
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       412302 150 -   3636681 gcatgtctttgagcataggtcc-agaat-ggagttatcctgccccttcttgcataagctgcactcagatgaatttcctacagtttctatttttgggttcatttttaagtagcacaggaaattagatatgcatgaagcaatt---tTTTTAAAGG-t
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       391434 150 -   4457520 gcatgtctttgagcataggtcc-agaat-ggagttatcctgccccttcttgcataaactgcagtcagatgaatttcctacagtttctatttttgggttcatttttaagtggcacatgaaattagatatgcatgaagcaatt---tTTttaaagc-t
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55205528  88 + 190850796 gcatgtctttgagcatgggtcc-agaat-ggagATATC----------------------------------------------------------------TTAAAGTGGTACCTGAAATTAGATATGCATGAAGCAGTTTTGTTTttaaaca--
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       285805  88 -   2086007 gcaggtctttgagcatgggtcc-agaat-ggagATATC----------------------------------------------------------------TTAAAGTGGTACCTGAAATTAGAGATGCGTGAAGCAGTTTTGTTTttaaaca--
i cebCap1.NW_016107707v1    C 0 C 0
s micMur3.chr9              116197838 150 + 116334831 gcatgtttttgagcatgggtcc-agaatgggaattatcctgccctttcttgcataagctgcactcagatgaatttcctacagtttctatttttggattc--tttgaagtggcacatgaaattagatatgcatgaagcaatt---ttttttttaact
i micMur3.chr9              I 96 C 0
s proCoq1.NW_012148396v1     13425944 148 +  16154928 gcatgtctttgagcatgggtcc-agaatgggaattatcctgccctttcttgcataagctgcactcagatgaatttcgtacagtttctatttttggattc--tttgaagtggcacatgaaattagatatggatgaagcaatt---tTTTTTT--act
i proCoq1.NW_012148396v1    I 416 C 0
s otoGar3.GL873689             348519 150 +   3845361 gcatgtctttgagcatgtgtcc-agaatgggaattatcctgccctttgttgcataagctgcactcagatgaatttcctacagtttctatttttggattc--tttgaagtggtgcatgaaattagatatacatgaggcaatt---tTtttttttact
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59926619 141 -  91889043 --gtgtgtctgagcaccggtccaagaat-ggtgttatctt----tttcttgcataatctgtactcagatgaatctcctagagtttctatttttgggttc--tttgaagaggagcatgaaattagatatgtatgatgcaatt---ttttaaaaa---
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       350770 433 +   3831555 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=765825.000000
s hg38.chr15_KI270851v1_alt    142728 61 +    263054 ttttattttgaaataa-taatagactctc-aggaagttgtaaagaaactagagaggtcattgt
s panTro5.chr15              73716770 61 -  83230942 ttttattttgaaataa-taatagactctc-acgaagttgtaaagaaactagagaggtcattgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74020474 61 -  99763055 ttttattttgaaataa-taatagactctc-atgaagttgtaaagaaactagagaggtcattgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        69205 54 -    281578 ttttattttg--------aatagactctc-aggaagttgtaaagaaactagagaggtcgttgt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70925300 61 + 121039945 ttttattttgaaataa-taatagactctc-aggaagttgtaaagaaactagagaggtcattgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164228796 61 - 169600520 ttttattttgaattaa-taatagactctc-aggaagttgtaaagaaagtagagaggtcattgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165549105 61 - 171882078 ttttattttgaattaa-taatagactctc-aggaagttgtaaagaaagtagagaggtcattgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       390889 61 +   2379783 ttttattttgaattaa-taatagactctc-aggaagttgtaaagaaagtagagaggtcattgt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       364965 61 +   4116138 ttttattttgaattaa-taatagactctc-aggaagttgtaaagaaagtagagaggtcattgt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53796515 61 +  58131712 ttttattttgaattaa-taatagactctc-aggaagttgtaaagaaagtagagaggtcgttgt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       412452 61 -   3636681 ttttattttgaattaa-taatagactctc-aggaagttgtaaagaaagtagagaggtcattgt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       391584 61 -   4457520 ttttattttgaattaa-taatagactctc-aggaagttgtaaagaaagtggagaggtcgttgt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55205616 61 + 190850796 ttttattttgcaataa-taatagattctc-aggaagttgtgaagaacggagagaggtcattgt
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       285893 61 -   2086007 ttttattttgcaataa-taatagactctc-aggaagttgtaaagaaagtagacaggtcgttgt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       351203 61 +   3831555 ttttattttccaataa-taatagattctc-aggaagttgtgaagaaagtagagaggtcattgt
i aotNan1.NW_018503298v1    I 433 C 0
s micMur3.chr9              116197988 61 + 116334831 ttttattttgaaataa-taacagactcac-aggaagttgtaaggaaagtagagaggtcactgt
i micMur3.chr9              C 0 I 1074
s proCoq1.NW_012148396v1     13426092 61 +  16154928 ttttattttgaaataa-taatagactcac-aggaagttataaagaaagtagagaggtccctgt
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             348669 62 +   3845361 ttttattttgaaataa-taatagacacacaaggaagttgtaaagaaagtagaaaggttactgt
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59926760 50 -  91889043 -cttattttgaaataatttatagattcac-gggaagttgcaa-----------aggtcactgt
i canFam3.chr3              C 0 I 2
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=56126.000000
s hg38.chr15_KI270851v1_alt    142789 6 +    263054 atattt
s panTro5.chr15              73716831 6 -  83230942 atattt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74020535 6 -  99763055 atattt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        69259 6 -    281578 atattt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70925361 6 + 121039945 atattt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164228857 6 - 169600520 atattt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165549166 6 - 171882078 atattt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       390950 6 +   2379783 atattt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       365026 6 +   4116138 atattt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53796576 6 +  58131712 atattt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       412513 6 -   3636681 atattt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       391645 6 -   4457520 atattt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55205677 6 + 190850796 gtgttt
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       285954 6 -   2086007 acatgt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       351264 6 +   3831555 atattt
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13426153 6 +  16154928 gtactc
i proCoq1.NW_012148396v1    C 0 I 59
s otoGar3.GL873689             348731 6 +   3845361 gtactt
i otoGar3.GL873689          C 0 I 3
s canFam3.chr3               59926812 6 -  91889043 ctcttc
i canFam3.chr3              I 2 C 0
e micMur3.chr9              116198049 1074 + 116334831 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=567303.000000
s hg38.chr15_KI270851v1_alt    142795 67 +    263054 gcgcatactgccccagtggttacatttt---------------------atgtaaccataatagagtataaaaacccagaaattgaag
s panTro5.chr15              73716837 67 -  83230942 gcgcatactgccccagtggttacgtttt---------------------atgtaattataatagagtataaaaacccagaaattgaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74020541 67 -  99763055 gtgcatactgccccagtggttacgtttt---------------------atgtaattataatagagtataaaaccccagaaattgaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        69265 67 -    281578 gcgcatactgccccagtggttacatttt---------------------atgtaactataatagagtataaagacccagaaattgaag
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70925367 67 + 121039945 gcgcatactgccccagtggttacatttt---------------------atgtaactataatacagtgtaaaaacccagaaattgaag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164228863 67 - 169600520 acgcatactgccccagtggttacatctt---------------------acgtaactgtaatacagtataaaaacccagaaattgaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165549172 67 - 171882078 acgcatactgccccagtggttacatctt---------------------acgtaactgtaatacagtataaaaacccagaaattgaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       390956 67 +   2379783 acgcatactgccccagtggttacatctt---------------------acgtaactgtaatacagtataaaaacccagaaattgaaa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       365032 67 +   4116138 acgcatactgccccagtggttacatctt---------------------acgtaactgtaatacagtataaaaacccagaaattgaaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53796582 67 +  58131712 acgcatactgccccagtggttacatctt---------------------acgtaactgtaatacagtataacaacccagaaattgaaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       412519 67 -   3636681 acgcatactgccccagtggttacatctt---------------------acgtaactgtaatacagtataaaaacccagaaattgaaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       391651 67 -   4457520 acgcatactgccccagtggttacatctt---------------------acgtaactatgatacagtataaaaacccagaaattgaaa
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55205683 78 + 190850796 gcccatactgccccagtggttacatcttgcggacgcatgtaacttgtacatgtaactgtaatacagtataaagaccca----------
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       285960 78 -   2086007 acccgtactaccccagtggttacatcttggggatgtatgtaacttacacatgtaactatgatacagtataaaaaccca----------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       351270 78 +   3831555 acccatactgccccagtgattacatcttgGGGATGTACGTAACTTATACATGTAACTGTAATACAGTATAAAAATGCA----------
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             348740 67 +   3845361 acccaaactctcccagcgggtgaatctc---------------------atgtaactatggtacaataacaaaacttataaatatcat
i otoGar3.GL873689          I 3 C 0
s canFam3.chr3               59926818 67 -  91889043 atccagatttccccagtggttacatctt---------------------atataactatagtacaatatcaaaaccaggaaattgaca
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116198049 1074 + 116334831 I
e proCoq1.NW_012148396v1     13426159 59 +  16154928 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=2441042.000000
s hg38.chr15_KI270851v1_alt    142862 245 +    263054 ttggtacaatgtgtgtgcgtagttctgtgccattctatc--aagtgtctgtaaatataactactactacaatttcctatgcagaa-ctgtttcatcaccagaaagatctctctcctgc-----ctct--------------------cttctgccaccatctctaactcctgccaaccactgatctg-ttctccatctctataattttgttactgtgagattaccaagtgatatgtgaccttcggaaa-tgatt-ttctttactcagcataatgcc
s panTro5.chr15              73716904 245 -  83230942 ttggtacaatgtgtgtgcgtagttctgtgccattctatc--aagtgtctgtaaatgtaactactactacaatttcctatgcagaa-ctgtttcatcactacaaagatctctctcctgc-----ctct--------------------cttctgccaccatctctaactcctgacaaccactaatctg-ttctccatctctataattttgttactgtgagattaccaagtgatatgtgaccttcggaaa-tgatt-ttctttactcagcataatgcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74020608 245 -  99763055 ttggtacaatgtgtgtgcgtagttctgtgccattctatc--aagtgtctgtaaatgtaactactactacaatttcctatgcagaa-ctgtttcatcactacaaagatctctctcctgc-----ctct--------------------cttctgccaccatctctaactcctgacaaccactaatctg-ttctccatctctataattttgttactgtgagattaccaagtgatatgttaccttcggaaa-tgatt-ttctttactcagcataatgcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        69332 244 -    281578 ttggtacaaagtgtgtgggtagttctgtgccattctatc--aagtgtctctaaatataactagtactacaa-ttcctatgccgaa-ctgtttcatcactacaaagatctctctcctgc-----ctct--------------------cttctgccaccatctctaactcctgacaaccactaatctg-ttctccatctctataattttgttactgtgagattaccaagtgatatgtgaccttcggaaa-tgatt-ttctttactcagcataatgcc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70925434 244 + 121039945 ttggtacaatgtgtgtgcatagttctgtgccattctatc--acgtgtctataaatataactactactacaa-ttcctacgcagaa-ctgtttcatcactacaaagatctctttcctgc-----ctct--------------------cttgtgccaccatctgtaactcctgccaaccactaatctg-ttctccatctctataattttgttactgtgagattaccaagtgatatgtgaccttcagaaa-tgatt-ttccttactcagcataatgcc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164228930 243 - 169600520 ttggtacaatgtgtgtgcatagttccgtgccattctatc--atgtgtctataaatatacctactaccataa-ttactgtgcagaa-ctgtttcatcactac-aggatctctctcctgc-----ccct--------------------cttctgccgtcatctctaactcctgacaactgctaatctg-ttctccatctctataattttgttattgtgagattatcatatgatatgtgaccttcggaaa-tgatt-ttctttactcagcataatgcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165549239 243 - 171882078 ttggtacaatgtgtgtgcatagttccgtgccattctatc--atgtgtctataaatatacctactaccataa-ttactgtgcagaa-ctgtttcatcactac-aggatctctctcctgc-----ccct--------------------cttctgccatcatctctaactcctgacaactgctaatctg-ttctccatctctataattttgttattgtgagattatcatatgatatgtgaccttcggaaa-tgatt-ttctttactcagcataatgcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       391023 243 +   2379783 ttggtacaatgtgtgtgcatagttccgtgccattctatc--atgtgtctataaatatacctactaccataa-ttactgtgcagaa-ctgtttcatcactac-aagatctctctcctgc-----ccct--------------------cttctgccatcatctctaactcctgacaactgctaatctg-ttctccatctctataattttgttattgtgagattatcatatgatatgtgaccttcggaaa-tgatt-ttctttactcagcataatGCC
i macNem1.NW_012011934v1    C 0 M 4740
s cerAty1.NW_012001462v1       365099 243 +   4116138 ttggtacaatgtgtgtgcatagttccgtgccattctatc--acgtgtctataaatacacctactaccataa-ttactgtgcagaa-ctgtttcatcactac-aagatctctctcctgc-----ccct--------------------cttctgccaccatctctaactcctgacaactgctaatctg-ttctccatctctataattttgttattgtgagattatcatatgatatgtgaccttcggaaa-tgatt-ttctttactcagcataatgcc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53796649 244 +  58131712 ttggtacaatgtgtgtgcatagttccgtgccattctatc--acgtgtctataaatatacctactaccgtaa-ttactgtgcagaa-ctgtctcatcactacgaagatctctctcctgc-----ctct--------------------cttctgccaccatctctaactcctgacaactactaatctg-ttctccatctctaaaattttgttattgtgagattatcatatgatatgtgaccttcggaaa-tgatt-ttctttactcagcataatgcc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       412586 243 -   3636681 ttggtacaatgtgtgtgcatagttccatgccattctatc--acgtgtctataaatgtacctactaccataa-ttactgtgcagaa-ctgtttcatcactac-aagatctctctcctgc-----ccct--------------------cttctgccaccatctctaactcctgacaacagctaatctg-ttctccatctctgtaattttgttattgtgagattatcatatgatatgtgaccttcggaaa-tgatt-ttctttactcagcataatgcc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       391718 244 -   4457520 ttggtacaatgcgtgtgcatagttccgtgccattctatc--acgtgtctataaatatacctgctaccataa-ttactatgcagaa-ctgtttcatcactacgaagatctgtcccctgc-----ctct--------------------cttctgccaccatctctaactcctgacaactactaatctg-ttctccatctctataattttgttattgtgagattatcatatgatatgtgaccttcggaaa-tgatt-ttctttactcagcataatgcc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55205761 242 + 190850796 --ggtaaaatgtgtgtgcatagttctgtgccattctctc--at--gtctgtaaatataaccac-agcacaa-ctactatgcagaa-ctgtttcatcactacaaagatctttctcctgcttt--ttct--------------------cttctgcgaccatctctaactcctgacaactactaatctg-ttccccatctctataattttgttgttgtgagattgccatatgatatgtgagcttcggaga-tgagt-ttgtttactcagcataatgcc
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       286038 245 -   2086007 --ggtacaatatgtgtgcatagtgctgtgccactctctc--ctcgttctgtaaatataaccactaccacaa-gtactatgcagaa-ctgtttcatcactatgaacatctttctcctgcttt--ttct--------------------cttctgccactgtctctaactcctggcaactactcatctg-ttccccatctctataattttgttatcgtgagattaccatatgataggtgagcttcggaaa-tgagt-ttgtttactcagcatattgcc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       351348 245 +   3831555 --GGTACAATGTGTGTGCATAGTTCTGTGCCATTCTCTC--ATGTGTCTATAAatataaccactaccgcaa-ttactgtgcagaa-ctgtttgatcactacaaagatctttctcctgcttt--ttct--------------------cttctgccaccatctctaactcctgacaactactaatctg-ttccccatgtctataattttgttatcgtgagattgccatatgatatgtgagcttcggaga-tgagt-ttgtttactcagcataatacc
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13426218 268 +  16154928 ctagtacagtatgtgtgtgtagttctgtgcccttccatcaaatgtgtctgttcgtgtaacagttactacaa-ttaggatacagaa-ctgtttcatcactacaaagatctccctcctgctacc-ctcta--tagtcacatctaccctcttcctaccaccatctctaattcctggcaaccgctaatctg-ttctccatctctgtaattttgttattgtgagattattatattgtacgtgactttctgaga-ttggc-ttgttcacttagcataatgcc
i proCoq1.NW_012148396v1    I 59 I 1
s otoGar3.GL873689             348807 266 +   3845361 tggttgcag--tgtgtgtgtagttc---gccattccatccaatgtgcccgttcatgtaatagctactgctg-ttagggtacagaacctgtttcttcactacaaagatctccctcctgctgccactctg--tggtcacacatacactccttctgccaccatctctaagtcctggcaaccactaatctg-ttctccatctctttaattttctaactgtgagattgccatagtacatgtgactttttgatt-ttggcttttttcaattagcataatgcc
i otoGar3.GL873689          C 0 I 1
s canFam3.chr3               59926885 211 -  91889043 ttggtacaa--tgtgtgcatagttctgtggca----atc-----------------------------------------------ctgttatcataccacagagatttccctctggc-----ccctgtatagtcacaccgtc----cttctcccaccatctttgacccctggcaatcactaatctgtttttttgtctttttaattttatcattttgagaatgtcatatggtacatgaccttttgagactggtt-ttgtt--cccagtgtaagacc
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116198049 1074 + 116334831 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=598184.000000
s hg38.chr15_KI270851v1_alt    143107 64 +    263054 -ctcaggtccgt------caaggt---ttgttgagtatatcagtagctAAACTGGGACCATTTATTTGTCTCTT
s panTro5.chr15              73717149 64 -  83230942 -ctcaggtccgt------caaggt---ttgttgagtatatcagtagctAAACTGGGACCATTTATTTGTCTCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74020853 64 -  99763055 -ctcaggtccgt------caaggt---ttgttgagtatatcagtagctAAACTGGGACCGTTTATTTGTCTCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        69576 64 -    281578 -ctcaggtccgt------caaggt---ttgttgagtatatcagtagctAAACTGGGACCATTTATTTGTCTCTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70925678 64 + 121039945 -ttgaggtccgt------caaggt---ttgttgagtatatcagtagctAAACTGGGACCATTTATTTGTCTCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164229173 64 - 169600520 -cttaggtccgt------caaggt---ttgttgagtatattagtagctAAACTGGGACCATTTATTTGTCTCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165549482 64 - 171882078 -cttaggtccgt------caaggt---ttgttgagtatattagtagctAAACTGGGACCATTTATTTGTCTCTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       365342 64 +   4116138 -cttaggtccgt------caaggt---ttgttaagtatatcagtagctAAACTGGGACCATTTATTTGTCTCTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53796893 64 +  58131712 -cttaggtccgt------caaggt---ttgttgagtgtatcagtagctAAACTGGGACCATTTATTTGTCTCTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       412829 64 -   3636681 -cttaggtccgt------caaggt---ttgttaagtatatcagtagttAAACTGGGACCATTTATTTGTCTCTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       391962 64 -   4457520 -ctcaggtccat------gaaggt---ttgttgagtatatcagtagctAAACTGGGACCATTTATTTGTCTCTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55206003 73 + 190850796 -ctcgggtccatcaacaacaaggttggttgttgagtatatcagtagctAAACTGGGACCATTTATTTGTCTCTT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       286283 63 -   2086007 -ctcaggtccat------caaggttgtttgttgagtacatcagtagctAAACTGGGACC----GTTTGTCTCTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       351593 67 +   3831555 -ctcaggtccat------caaggtggtttgttgagtatatcagtagctAAACTGGGACCATTTATTTGTCTCTT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13426487 63 +  16154928 -ttgtggtccat------caaagc---at-ttgagtgtatcagtagttAAACTGGAACCATTTATTTGTCTCTT
i proCoq1.NW_012148396v1    I 1 I 4324
s otoGar3.GL873689             349074 60 +   3845361 -ttctttttcat------cagagc---at-ttaagtgtatcaatagttAAACTGGAACTATTTATTTGTCT---
i otoGar3.GL873689          I 1 C 0
s canFam3.chr3               59927096 59 -  91889043 cttgaggtgcat------caaagt----tgtcgagtacattaataattAAACTCGAA----TTGTTTGTCTCT-
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116198049 1074 + 116334831 I
e macNem1.NW_012011934v1       391266 4740 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=640209.000000
s hg38.chr15_KI270851v1_alt    143171 80 +    263054 CATCTAATCATCAATTAAAAATGACCACGCATAAATGTAAGCTTTTACAGTTAAAC------TTATTGTATATAAATATTGTCACT
s panTro5.chr15              73717213 80 -  83230942 CATCTAATCATCAATTAAGAATGACTACGCATAAATGTAAGCTTTTAGAGTTAAGC------TTATTGTATATAAGTATTGTCACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74020917 80 -  99763055 CATCTAATCATCAATTAAGAATGACTACGCATAAATGTAAGCTTTTAGAGTTAAGC------TTATTGTATATAAGTATTGTCACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        69640 80 -    281578 CATCTAATCATCAATTAAGAATGACTACGCATAAATGTAAGCTTTTAGAGTTAAAC------TTATTGTATATAAATATTGTCACT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70925742 80 + 121039945 CATCTAATCATCAATTAAAAATGACTAAGCATATATGTGAGCTTTTAGAGTTAAAC------GTATTGTATATAAATATTGTCACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164229237 76 - 169600520 CATCTAATCATC----AAAAATGACTAAGCATAAATGTAAGCTTTTAGAGTTAAAC------TTACTGAATATAAATATTGTCACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165549546 76 - 171882078 CATCTAATCATC----AAAAATGACTAAGCATAAATGTAAGCTTTTAGAGTTAAAC------TTACTGAATATAAATATTGTCACT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       365406 76 +   4116138 CATCTAATCATC----AAAAATGACTAAGCATAAATGTAAGCTTTTAGAGTTAAAC------TTATTGAATATAAATATTGTCACT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53796957 76 +  58131712 TATCTAATCATC----AAAAATGACTAAGCATAAATGTAAGCTTTTAGAGTTAAAC------TTACTGAATATAAATATTGTCACT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       412893 76 -   3636681 CATCTAATCATC----AAAAATGACTAAGCATAAATGTAAGCTTTTAGAGTTAAAC------TTACTGAATATAAATATTGTCACT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392026 73 -   4457520 CATCTA---ATC----AAAAATGACTAAGCATAAATGTAAGCTTTTAGAGTTAAAC------TTACTGAATATAAATATTGTCACT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55206076 80 + 190850796 CATCTAACCATCAATTCAAAATGAATAAGCATAAATGTAAGCTTTTAGAGTTAAAC------TTATTGAATGTAAATATTGTCACT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       286346 77 -   2086007 CATCTA---AGCAATTAAAAATGAATAAGCATAAATGTAAGCTTTTAGAGTTAACC------TTATTGAATGTAAATATTGTCACT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       351660 79 +   3831555 CATCTAATCATCAATTAAAAATGAATAAGCATAAACATAAGCTTTTAGAGTTAAAC------TTATTGAAT-TAAATATTGTCACT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             349134 78 +   3845361 --TCTAATTATCAATTTCAAATGATTAAACATAAAAATAAGCTTTTAAAATTAAAT------TTATTGAGTATAAATATTGCCACT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59927155 84 -  91889043 --TCTAATCATTAATTTGAAATGAGTCAAGATAAAAGTTAAATTTTAAAATTGAACTTAAAATTATTAAGTGTATATATTGTTACT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116198049 1074 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e macNem1.NW_012011934v1       391266 4740 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=9555.000000
s hg38.chr15_KI270851v1_alt    143251 1 +    263054 T
s panTro5.chr15              73717293 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74020997 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        69720 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70925822 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164229313 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165549622 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       365482 1 +   4116138 T
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797033 1 +  58131712 T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       412969 1 -   3636681 T
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392099 1 -   4457520 T
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55206156 1 + 190850796 T
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       286423 1 -   2086007 T
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       351739 1 +   3831555 T
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             349212 1 +   3845361 T
i otoGar3.GL873689          C 0 I 1092
e micMur3.chr9              116198049 1074 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927239 0 -  91889043 C
e macNem1.NW_012011934v1       391266 4740 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=1825332.000000
s hg38.chr15_KI270851v1_alt    143252 267 +    263054 C-----------------------ggctgggcgcggtggctcacgcctgtaatcacagcactttgggaggccgaggagggcggatcacttgaggtcaggagttcaaaaccaacctggcccccatggtgaaaccctgtctctactaaaaatacaaat--gagccaggtgtggtggtgtgcgcttgtaatcccagctacttgggaggttg----aggcaggagaactgcttgaacccagaaggtggaggttgcagtgagccgagatcatgccattgcactccagcctggccaacacag
s panTro5.chr15              73717294 267 -  83230942 C-----------------------ggctgggcgcggtggctcacgcctgtaatcacagcactttgggaggccgaggagggcggatcacttgaggtcaggagttcaaaaccagcctggcgcccatggtgaaaccctgtctctactaaaaataaaaaa--gagccaggcgtggtagtgtgcgcttgtaatcccagctacttgggaggttg----aggcaggagaagtgcttgaacccaggaggtggaggttgcagtgagccgagatcatgccattgcactccagcctggccaacacag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74020998 267 -  99763055 C-----------------------ggctgggcgcggtggctcacgcctgtaatcacagcactttgggaggccgaggagggcggatcacttgaggtcaggagttcaaaaccagcctggcgcccatggtgaaaccctgtctctactaaaaataaaaaa--gagccaggcgtggtagtgtgcgcttgtaatcccagctacttgggaggttg----aggcaggagaagtgcttgaacccaggaggtggaggttgcagtgagccgagatcatgccattgcactccagcctggccaacacag
i panPan2.chr15             C 0 M 20
s gorGor5.CYUI01000141v1        69721 267 -    281578 T-----------------------ggctgggtgcggtggctcacgcctgtaatcacagcactttgggaggcggaggagggcggatcacttgaggtcaggagtacaaaaccagcctggcgcccatggtgaaaccctgtctctactaaaaatacaaaa--gagccaggcgtggtagtgtgcgcttgtaatcccagctacttgggaggttg----aggcaggagaagtgcttgaacccaggaggtggaggtagcagtgagccgagatcatgccattgcactccagcctggccaacacag
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70925823 267 + 121039945 T-----------------------ggctgggcgtggtggctcacacttgtaatcacggcacttggggaggccgaggcaggtggatcacttgaggtcaggaattcaaaaccaggctggcccacatggtgaaaccctgtctctactaaaaatacaaaa--cagccaggcatggtggtgtctgcttgtaatcccagctacttgggaggttg----aggcaggagaactgcttgaacctaggaggtggaggttgcagtgagctgagattatgctattgcactgcagcctggccaacacag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164229314 263 - 169600520 C-----------------------ggccggatgcgatggctcacgcctgtaatcccagtactttgggaggccaaggcgggcggatcacttgaggtcaggagtttgaaaccagcctggcccacatgatgaaaccgtgtctctgctaaaaatacaaaa------caggcgtggttgtgcacctttgtaatcctagctacttgggaggttg----aggcaggagaactgcttgaacccaggaggtggaggttgcagtgagccaggatcacaccactgcactccagcctggccaacacag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165549623 263 - 171882078 C-----------------------ggccagatgcgatggctcacgcctgtaatcccagtactttgggaggccaaggcgggcggatcacttgaggtcaggagtttgaaaccagcctggcccacatgatgaaaccgtgtctctgctaaaaatacaaaa------caggcgtggttgtgcacctttgtaatcctagctacttgggaggttg----aggcaggagaactgcttgaacccaggaggtggaggttgcagtgagccaggatcacaccactgcactccagcctggccaacacag
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       365483 267 +   4116138 C-----------------------ggccggatgcgatggctcacgcctgtaatcccagtactttgggaggccaaggcgggcggatcacttgaggtcaggagtttgaaaccagcctggcccacatgatgaaaccgtgtctctgctaaaaatacaaaa--cagccaggcgtggtggtgcacctttgtaatcctagctacttgggaggttg----aggcaggagaactgcttgaacccaggaggtggaggttgcagtgagccaggatcacaccactgcactccagcctggccaacacag
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797034 267 +  58131712 T-----------------------ggccggatgcgatggctcacgtctgtaatcccagtactttgggaggccaaggcgggcggatcacttgacgtcaggagtttgaaaccagcctggcccacatgatgaaaccgtgtctctgctaaaaatacaaag--cagccaggcgtggtggtgcacctttgtaatcctagctacttgggaggttg----aggcaggagaactgcttgaacccaggaggtggaggttgcagtgagccaggatcacaccactgcactccagcctggccaacacag
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       412970 267 -   3636681 C-----------------------ggccggatgcgatggctcacgcctgtaatcccagtactttgggaggccaaggcgggcggatcacttgaggtcaggagtttgaaaccagcctggcccacatgatgaaaccgtgtctctgctaaaaatacaaaa--cagccaggcgtggtggtgcacctttgtaatcctagctacttgggaggttg----acgcaggagaactgcttgaacccaggaggtgaaggttgcagtgagccaggatcacaccactgcactccagcctggccaacacag
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392100 271 -   4457520 C-----------------------ggctggatgtgatggctcacgcctgtaatcccagtactttgggaggccaaggcgggcggatcacttgaggtcaggagtttgaaaccagcctggcccacatgatgaaaccttgtctctgctaaaaatacaaaa--cagccaggcgtggtggtgcacctttgtaatcccagctacttgggaggttgaggcaggcaggagaactgcttgaacccaggaggtggaggttgtagtgagcaaggatcacaccactgcactctagcctggccaacacag
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55206157 292 + 190850796 CATGTTTCGAAATATCAGGAGATGggctgggtgcggtggcttattcctataatcccagcactttgggaggccaaggagggtggatcacctgaggtcaggagttcaagatcagcctggccagcatggtgaaacttcgtctctactaaaaatgcaaaaattagccgggcatagtagtgtgcgcctgtattcccagctacttgggagactg----aggcaggagaatcgtttgaacctgggaggtgtaggttgcagtgagccaagactgagccactgcacttcagcatgggcaacagag
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       286424 292 -   2086007 CATGTTTAGAAATACCAGGAGATGggctgggagcagtggctcactcctataatcccagcactttgggaggccaaggagggtggatcacctgagatcaggcgttcgagaccagcctggccaacatggtgaaactctgtctctactaaaaatgcaaaaattagctgggcatagtagcgtgcacctgtattcccagctacttgggaggctg----aggcaggagaatcgcttgaacctgggaggcggaggttgcagtgaacccagatcacaccactgcactccagcctgggcgacagag
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       351740 292 +   3831555 CATGTTTAGAAATATCAGGAGATGggttgggcgcagtggctcactcctataatcccagcactttgggaagccaaggagggtggatcatctgaggtcaggagttcgagaccagcctggccaacatggtgaaactccgtctctaacaaaaatgcaaaaattagccgggcatagtagcatgcgcctgtattcccagctacttgggaggctg----aggcaggagaatcgcttgaacctgggaggcggaggttgcaatgagccaagattgagccactgcacttcagcctgggcaacagag
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116198049 1074 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927239   0 -  91889043 C
e otoGar3.GL873689             349213 1092 +   3845361 I
e macNem1.NW_012011934v1       391266 4740 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=51496.000000
s hg38.chr15_KI270851v1_alt    143519 8 +    263054 caagactc
s panTro5.chr15              73717561 8 -  83230942 caagactc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        69988 8 -    281578 caagactc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926090 8 + 121039945 caagattc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164229577 8 - 169600520 caagactc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165549886 8 - 171882078 caagactc
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       365750 8 +   4116138 caagactc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797301 8 +  58131712 caagactc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413237 8 -   3636681 caagactc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392371 8 -   4457520 caagactc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55206449 8 + 190850796 tgagactc
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       286716 8 -   2086007 cgagactc
i cebCap1.NW_016107707v1    C 0 I 886
s aotNan1.NW_018503298v1       352032 8 +   3831555 tgagactc
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116198049 1074 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927239 0 -  91889043 C
e otoGar3.GL873689             349213 1092 +   3845361 I
e panPan2.chr15              74021265 20 -  99763055 M
e macNem1.NW_012011934v1       391266 4740 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=2163.000000
s hg38.chr15_KI270851v1_alt    143527 1 +    263054 c
s panTro5.chr15              73717569 1 -  83230942 c
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        69996 1 -    281578 c
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926098 1 + 121039945 c
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164229585 1 - 169600520 t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165549894 1 - 171882078 t
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       365758 1 +   4116138 t
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797309 1 +  58131712 t
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413245 1 -   3636681 t
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392379 1 -   4457520 t
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55206457 1 + 190850796 c
i calJac3.chr3              C 0 C 0
s aotNan1.NW_018503298v1       352040 1 +   3831555 c
i aotNan1.NW_018503298v1    C 0 I 2895
s otoGar3.GL873689             350305 1 +   3845361 c
i otoGar3.GL873689          I 1092 C 0
e micMur3.chr9              116198049 1074 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927239 0 -  91889043 C
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e panPan2.chr15              74021265 20 -  99763055 M
e macNem1.NW_012011934v1       391266 4740 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=75893.000000
s hg38.chr15_KI270851v1_alt    143528 24 +    263054 ttctc----------aaaaaaaaaaaaTGTCACT
s panTro5.chr15              73717570 23 -  83230942 atctc-----------aaaaaaaaaaTTGTCACT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        69997 25 -    281578 atctc---------aaaaaaaaaaaaTTGTCACT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926099 26 + 121039945 gtctc-----a---aaaaaaaaaaaaTTGTCACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164229586 25 - 169600520 gtctc---------aaaaaaaaaaaaTTGTCACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165549895 25 - 171882078 gtctc---------aaaaaaaaaaaaTTGTCACT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       365759 26 +   4116138 gtctc-----a---aaaaaaaaaaaaTTGTCACT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797310 31 +  58131712 gtctcaaaaaa---aaaaaaaaaaaaTTGTCACT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413246 26 -   3636681 gtctc-----a---aaaaaaaaaaaaTTGTCACT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392380 26 -   4457520 gtctc-----a---aaaaaaaaaaaaaGGTCACT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55206458 29 + 190850796 atttc-----aaacgaaacaaaaCAAGTGTTGCT
i calJac3.chr3              C 0 C 0
s otoGar3.GL873689             350306 23 +   3845361 -----------tgcccAATAGAAAAATTTTTATT
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116198049 1074 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927239  0 -  91889043 C
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e panPan2.chr15              74021265 20 -  99763055 M
e macNem1.NW_012011934v1       391266 4740 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=20067.000000
s hg38.chr15_KI270851v1_alt    143552  8 +    263054 TCA---------------------------TGCTT
s panTro5.chr15              73717593  8 -  83230942 TCA---------------------------TGCTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        70022  8 -    281578 TCA---------------------------TGCTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926125  8 + 121039945 TCA---------------------------TGCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164229611  8 - 169600520 TCA---------------------------TGCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165549920  8 - 171882078 TCA---------------------------TGCTT
i macFas5.chr7              C 0 I 301
s cerAty1.NW_012001462v1       365785  8 +   4116138 TCA---------------------------TGCTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797341  8 +  58131712 TCA---------------------------TGCTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413272  8 -   3636681 TCA---------------------------TGCTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392406  8 -   4457520 TCA---------------------------TGCTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55206487 35 + 190850796 TAACTGCAGAGATGAACAGGAGGCAGCTTTTGCTC
i calJac3.chr3              C 0 I 25
s otoGar3.GL873689             350329  1 +   3845361 T----------------------------------
i otoGar3.GL873689          C 0 I 1
s canFam3.chr3               59927239  8 -  91889043 TTA---------------------------TGCTT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116198049 1074 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e panPan2.chr15              74021265 20 -  99763055 M
e macNem1.NW_012011934v1       391266 4740 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=43260.000000
s hg38.chr15_KI270851v1_alt    143560 8 +    263054 AGAAATAT
s panTro5.chr15              73717601 8 -  83230942 AGAAATAT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        70030 8 -    281578 AGAAATAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926133 8 + 121039945 AGAACTAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164229619 8 - 169600520 AGAAATAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165550229 8 - 171882078 agaaaTAT
i macFas5.chr7              I 301 C 0
s cerAty1.NW_012001462v1       365793 8 +   4116138 AGAAATAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797349 8 +  58131712 AGAAATAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413280 8 -   3636681 AGAAATAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392414 8 -   4457520 AGAAATAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55206547 8 + 190850796 AGAAGTAG
i calJac3.chr3              I 25 C 0
s otoGar3.GL873689             350331 8 +   3845361 CAAAATTC
i otoGar3.GL873689          I 1 C 0
s canFam3.chr3               59927247 8 -  91889043 AGAAATAT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116198049 1074 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e panPan2.chr15              74021265 20 -  99763055 M
e macNem1.NW_012011934v1       391266 4740 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=230983.000000
s hg38.chr15_KI270851v1_alt    143568 55 +    263054 -----CAGTAG--------ATggccgggtgtggtggctta-gcctgtaatcctaacagtttgggaggc----------------t
s panTro5.chr15              73717609 63 -  83230942 -----CAGTAGATGGCTACATggctgggtgtggtggctca-gcctgtaatcctagcagtttgggaggc----------------t
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        70038 63 -    281578 -----CAGTAGATGGCTACATggctgggtgtggtggctca-gcctgtaatcctagcagtttgggaggc----------------t
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926141 71 + 121039945 -----CAGTAG--------ATggccaggtgcggtggctca-gcctgtaatcctagcagtttggtaggctgaggtgggtggatcat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164229627 55 - 169600520 -----CAGCAG--------AT-gccgggcgcggtggctcacgcctgtaatcccagcactttgggaggc----------------c
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165550237 55 - 171882078 -----CAGCAG--------ATggccaggtgtggtggctca-gcccgtaatcccagcactttgggaggc----------------c
i macFas5.chr7              C 0 I 16
s cerAty1.NW_012001462v1       365801 55 +   4116138 -----CAGCAG--------ATggccaggtgtggtggctca-gcccgtaatcccagcactttgggaggc----------------c
i cerAty1.NW_012001462v1    C 0 I 16
s chlSab2.chr26              53797357 55 +  58131712 -----CAGCAG--------ATggccaggtgtggtggctca-gcccgtaatcccagcactttgggaggc----------------t
i chlSab2.chr26             C 0 I 16
s manLeu1.NW_012102332v1       413288 55 -   3636681 -----CAGCAG--------ATggccaggcgcggtggctca-gcccgtaatcccagcactttgggaggc----------------t
i manLeu1.NW_012102332v1    C 0 I 16
s colAng1.NW_012115278v1       392422 55 -   4457520 -----CAGCAG--------ATggccaggtgtggtggctca-gtctgtaatcccagcactttgggaggc----------------c
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55206555 61 + 190850796 AGTGATATTAC--------ATAGGCTggcgcggtggcttgtgcctgtaatctcagtactttgggaggc----------------c
i calJac3.chr3              C 0 I 18
s otoGar3.GL873689             350339 55 +   3845361 -----CATGAT--------A-ggccaggcgcggtggctcacgcctgtaatcccaacactttgggagat----------------t
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116198049 1074 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927255  0 -  91889043 C
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e panPan2.chr15              74021265 20 -  99763055 M
e macNem1.NW_012011934v1       391266 4740 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=28926.000000
s hg38.chr15_KI270851v1_alt    143623 4 +    263054 gagg
s panTro5.chr15              73717672 4 -  83230942 gagg
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        70101 4 -    281578 gagg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926212 4 + 121039945 gagg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164229682 4 - 169600520 gagg
i rheMac8.chr7              C 0 I 750
s macFas5.chr7              165550308 4 - 171882078 gagg
i macFas5.chr7              I 16 C 0
s macNem1.NW_012011934v1       396074 4 +   2379783 gagg
i macNem1.NW_012011934v1    M 4740 C 0
s cerAty1.NW_012001462v1       365872 4 +   4116138 gagg
i cerAty1.NW_012001462v1    I 16 C 0
s chlSab2.chr26              53797428 4 +  58131712 gagg
i chlSab2.chr26             I 16 C 0
s manLeu1.NW_012102332v1       413359 4 -   3636681 gagg
i manLeu1.NW_012102332v1    I 16 C 0
s colAng1.NW_012115278v1       392477 4 -   4457520 gagg
i colAng1.NW_012115278v1    C 0 I 16
s calJac3.chr3               55206634 4 + 190850796 gaag
i calJac3.chr3              I 18 C 0
s otoGar3.GL873689             350394 4 +   3845361 gagg
i otoGar3.GL873689          C 0 I 17
e micMur3.chr9              116198049 1074 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927255 0 -  91889043 C
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e panPan2.chr15              74021265 20 -  99763055 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=43262.000000
s hg38.chr15_KI270851v1_alt    143627 8 +    263054 tcaggaga
s panTro5.chr15              73717676 8 -  83230942 tcaggaga
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        70105 8 -    281578 tcaggaga
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926216 8 + 121039945 tcaggaga
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165550312 8 - 171882078 tcaagaga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       396078 8 +   2379783 tcaggaga
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       365876 8 +   4116138 tcaggaga
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797432 8 +  58131712 tcaggaga
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413363 8 -   3636681 tcaggaga
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392497 8 -   4457520 tcaggaga
i colAng1.NW_012115278v1    I 16 C 0
s calJac3.chr3               55206638 8 + 190850796 ttaggagt
i calJac3.chr3              C 0 C 0
s otoGar3.GL873689             350415 8 +   3845361 tcaggagt
i otoGar3.GL873689          I 17 C 0
e micMur3.chr9              116198049 1074 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927255 0 -  91889043 C
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e panPan2.chr15              74021265 20 -  99763055 M
e rheMac8.chr7              164229686 750 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=1100167.000000
s hg38.chr15_KI270851v1_alt    143635 202 +    263054 tcgaggtcatcctggccaacatggtgaaaccccatctctactaaaaataca--aaaattagctgggtgtggtggcacgtgcctgtagtcccagctacttaggaggctgaggcaggagaatcgcttgaacccaggtggcggaggttgtagtgagctgagatcgcgccactgcactacagcctg----gtgagagagcgagaatctgtct
s panTro5.chr15              73717684 202 -  83230942 tcgaggtcatcctggccaacatggcgaaaccccatctctactaaaaataca--aaaattagctgggtgtggtggcacgtgcctgtagtcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgtagtgagacgagatcgcgccactgcactacagcctg----gtgagagagcgagaatccgtct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74021285 202 -  99763055 tcgaggtcatcctggccaacatggcgaaaccccatctctactaaaaataca--aaaattagctgggtgtggtggcacgtgcctgtagtcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgtagtgagacgagatcgcgccactgcactacagcctg----gtgagagagcgagaatccgtct
i panPan2.chr15             M 20 I 1
s gorGor5.CYUI01000141v1        70113 202 -    281578 tcgaggtcatcctggccaacatggtgaaaccccatatctactaaaaataca--aaaattagctgggtgtggtggcacgtgcctgtagtcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgtagtgagccgagatcgtgccactgcactacagcctg----gtgagagagcgagaatccatct
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926224 202 + 121039945 ttgaggtcatcctggccaacatggtgaaaccccatctctactaaaaataga--aaaattagctgggcgtggtggcaggtgcctgtagtccccgctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgtagtgagctgagatcgtgccattgcactccagcctg----gtgagagagcaagaatccgtct
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165550320 201 - 171882078 -tgagaccatcgtggccaacatggtgaaaccccatctctactaaaaataca--aaaattagctggacgtggtggcacgtgcctgtagttccagctactcaggaagctgaggcaggagaatcacttgaaccctggaggcggaggttgtagtgagacaagatcgcgccactgtactccagcctg----gctacagagtgagaatccgtct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       396086 201 +   2379783 -tgagaccatcgtggccaacatggtgaaaccccatctctactaaaaataca--aaaattagctggacgtggtggcacgtgcctgtagttccagctactcaggaagctgaggcaggagaatcacttgaacccgggaggcagaggttgtagtgagacaagatcgcgccactgtactccagcctg----gctacagagtgagaatccgtct
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       365884 201 +   4116138 -tgagaccatcgtggccaacatggtgaaaccccatctctactaaaaataca--aaaattagctggacgtggtggcacgtgcctgtagttccagctactcaggaagctgaggcaggagaatcacttgaacccgggaggcggaggttgtagtgagccaagatcacgccaccgtactccagcctg----gctacagagtgagaatccgtct
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797440 201 +  58131712 -tgagaccatcgtggccaacatggtgaaaccccatctctactaaaaataca--aaaattagctggacgtggtggcaggtgcctgtagtctcagctactcaggaagctgaggcaggagaatcgcttgaacccgggaggcggaggttgtagtgagccaagatcgcgccactgcactccagcctg----ggtacagagtgagaatctgtct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413371 201 -   3636681 -tgagaccatcgtggccaacatggcgaaaccccgtctctactaaaaataca--aaaattagctggacgtggtggcatgtgcctgtagttccagctactcaggaagctgaggcaggagaatcacttgaacccgggaggcggaggttgtagtgagccaagatcgcgccaccgtactccagcctg----gctacagagtgagaatccgtct
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392505 201 -   4457520 -tgagaccatcgtggctaacgtggtgaaaccctatctctactaaaaatata--aaaattagctgggcgtggtggcacgtgcctgtagtcccagctactcaggaagctgaggcaggagaattgcttgaacccgggaggaggaggttgtagtaagctaagatcgcgccactatactccagcctg----gctacagcgtgagaatccgtct
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55206646 176 + 190850796 tacagactagcctggccaacatggcgaaaccccttctctactaaaaatagaacaaaattgtccacgtgccatggtgtgcgcctgt--------------------------------aatctcttgaacctaggaggcggaggttgcagtgagcccagatcacaccattgcactccagcctgagcaatgacagagcgagactctgcct
i calJac3.chr3              C 0 I 863
s otoGar3.GL873689             350423 197 +   3845361 tgaagaccagcctgagcaaga--gcaagatcccatctctactagacataga--aaaactggctgggtgttgtgatgggtgcctgtagtcccagctagttgggaggttgaggcaagaggatcacttgagccccagagtttgcggttgctataagctatga---caccaagacactctatagag----gggacaaagtgagtctatgtct
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116198049 1074 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927255   0 -  91889043 C
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e rheMac8.chr7              164229686 750 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=26387.000000
s hg38.chr15_KI270851v1_alt    143837 15 +    263054 c--------------------aaaaaaaataaaaa
s panTro5.chr15              73717886 15 -  83230942 c--------------------aaaaaaaataaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74021488 15 -  99763055 c--------------------aaaaaaaataaaaa
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01000141v1        70315 15 -    281578 c--------------------aaaaaaaataaaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926426 12 + 121039945 c--------------------aaaaaa---aaaaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165550521 26 - 171882078 caTT---------Taaaaaaaaaaaaaaaaaaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       396287 23 +   2379783 catt------------aaaaaaaaaaacaacaaaa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       366085 27 +   4116138 catt--------aaaaaaaaaaaaaaaaaaaaaaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797641 21 +  58131712 tatt--------------aaaaaaaaaaaaaaaga
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413572 35 -   3636681 cattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392706 18 -   4457520 cgtc-----------------aaaaaaaaaaaaaa
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             350620 15 +   3845361 --------------------ctgaaaaaataaaaa
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116198049 1074 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927255  0 -  91889043 C
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e rheMac8.chr7              164229686 750 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55206822 863 + 190850796 I

a score=10240.000000
s hg38.chr15_KI270851v1_alt    143852 4 +    263054 aGGG
s panTro5.chr15              73717901 4 -  83230942 aGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74021503 4 -  99763055 aGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        70330 4 -    281578 aGAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926438 4 + 121039945 aGAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165550547 4 - 171882078 aaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       396310 4 +   2379783 aaaa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       366112 4 +   4116138 agaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797662 4 +  58131712 agaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413607 4 -   3636681 aGAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392724 4 -   4457520 agaa
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116198049 1074 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927255 0 -  91889043 C
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e otoGar3.GL873689             350635 0 +   3845361 C
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e rheMac8.chr7              164229686 750 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55206822 863 + 190850796 I

a score=134595.000000
s hg38.chr15_KI270851v1_alt    143856 29 +    263054 CAGTAGA-T-AAAAAAAGTACAAACATGAGT
s panTro5.chr15              73717905 29 -  83230942 CAGTAGA-T-AAAAAAAGTATAAACATGAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74021507 29 -  99763055 CAGTAGA-T-AAAAAAAGTATAAACATGAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        70334 30 -    281578 CAGTAGATT-AAAAAAAGTATAAACATGAGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926442 29 + 121039945 CATTAGA-T-AAAAAAAGTATAAACATGAAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165550551 29 - 171882078 CAGTAGA-T-AAAAAAAGTATAAACATGAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       396314 29 +   2379783 CAGTAGA-T-AAAAAAAGCATAAACATGAAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       366116 30 +   4116138 CAGTAGA-TAAAAAAAAACATAAACATGAAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797666 29 +  58131712 CAGTAGA-T-AAAAAAAGCATAAACATGAAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413611 30 -   3636681 CAGTAGA-TAAAAAAAAGCATAAACATGAAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392728 30 -   4457520 cagtaga-taaaaaaaaGTATAAACATGAAT
i colAng1.NW_012115278v1    C 0 C 0
s canFam3.chr3               59927255 28 -  91889043 CAGTAGA-T-TAAAGAA-CATAAACGTGATC
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116198049 1074 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e otoGar3.GL873689             350635  0 +   3845361 C
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e rheMac8.chr7              164229686 750 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55206822 863 + 190850796 I

a score=464214.000000
s hg38.chr15_KI270851v1_alt    143885 76 +    263054 ATCTTGATAAATTCTATTCTCAGGCTTTCAGGTTCATAATCCTGTTGATA----GATGACATGTAGAAATAGAAGAATTT-
s panTro5.chr15              73717934 76 -  83230942 ATCTTGATAAATTCTATTCTCAGGCTTTCAGGTTCATAATCCAGTTGATA----GATGACATGTAGAAATAAAAGAATTT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74021536 76 -  99763055 ATCTTGATAAATTCTATTCTCAGGCTTTCAGGTTCATAATCCAGTTGATA----GATGACATGTAGAAATAAAAGAATTT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        70364 76 -    281578 ATCTTGATAAATTCTGTTCTCAGGCTTTCAGGTTCATAATCCAGTTGATA----GATGACATGTAGAAATAAAAGACTTT-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926471 76 + 121039945 ATCTTGATAAATTCTATTCTCAGGCTTTCAGGTTCATAATCCAGTTGATA----GATGACATGTAGAAATAGAAGAATTT-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165550580 76 - 171882078 ATCTTGATAAATTCTATTCTCAGGCTTTCAGGTTCATAATACAGTTGATA----GATGACAGGTAGAAATAGAAGAATTT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       396343 76 +   2379783 ATCTTGATAAATTCTATTCTCAGGCTTTCAGGTTCATAATACAGTTGATA----GATGACAGGTAGAAATAGAAGAATTT-
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       366146 76 +   4116138 ATCTTGATAAATTCTATTCTCAGGCTTTCAGGTTCATAATACAGTTGATA----GATGACAGGTAGAAATAGAAGAATTT-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797695 76 +  58131712 ATCTTGATAAATTCTGTTCTCAGGCTTTCAGGTTCATAATACAGTTGATA----GATGACAGGTAGAAATAGAAGAATTT-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413641 76 -   3636681 ATCTTGATAAATTCTATTCTCAGGCTTTCAGGTTCATAATACAGTTGATA----GATGACAGGTAGAAATAGAAGAATTT-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392758 80 -   4457520 ATCTTGATAAATTCTATTCTCAGGCTTTCAGGTTCATAATACAGTTGATAGATGGATGACAGGCAGAAATAGAAGAATTT-
i colAng1.NW_012115278v1    C 0 C 0
s micMur3.chr9              116199123 76 + 116334831 ATCTTGATAAATTCCATTCTCAAGTTTTCTGACTAATAATGCACTTGATA----GATGACATGTAGAAATAAAAGAATTT-
i micMur3.chr9              I 1074 I 3660
s canFam3.chr3               59927283 65 -  91889043 ATCTTGGTAAATTCTATTTTCAGGTTTTC------------CAGTTGACA----GATGAGATGTAGaaataaaataatttt
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e otoGar3.GL873689             350635  0 +   3845361 C
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e rheMac8.chr7              164229686 750 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55206822 863 + 190850796 I

a score=124319.000000
s hg38.chr15_KI270851v1_alt    143961 29 +    263054 GTAAATATAGGAATATTCATT--------GATGTTTT
s panTro5.chr15              73718010 29 -  83230942 GTAAATATAGGAGTCTTCATT--------GACGTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74021612 29 -  99763055 GTAAATATAGGAGTCTTCATT--------GACGTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        70440 29 -    281578 GTAAATATAGGAGTCTTCATT--------GACATTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926547 29 + 121039945 GTAAATATAGGTATCTTCATT--------GATGTTTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165550656 28 - 171882078 GTAAATATAGGTATCTTCATT---------ATGTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       396419 28 +   2379783 GTAAATATAGGTATCTTCATT---------ATGTTTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       366222 28 +   4116138 GTAAATATAGGTATCTTCATT---------ATGTTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797771 28 +  58131712 GTAAATATAGGTATCTTCATT---------ATGTTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413717 28 -   3636681 GTAAATATAGGTATCTTCATT---------ATGTTTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392838 28 -   4457520 GTAAATATAGGTATCTTCATT---------ATGTTTT
i colAng1.NW_012115278v1    C 0 C 0
s canFam3.chr3               59927348 37 -  91889043 ataaatataGGTAACTTAAtattcataatgacatctt
i canFam3.chr3              C 0 I 1349
e micMur3.chr9              116199199 3660 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e otoGar3.GL873689             350635  0 +   3845361 C
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e rheMac8.chr7              164229686 750 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55206822 863 + 190850796 I

a score=326586.000000
s hg38.chr15_KI270851v1_alt    143990 80 +    263054 TAGGACTGGATTCTAAGGGTGGTTTTTACCTCTAATATCCAAATACTGCTGCCTCAAGAGAACAATTTTTGTTTTCAAAA
s panTro5.chr15              73718039 80 -  83230942 TAGGACTGGATTCTAAGGGTGGTTTTTACCTCTAATATCCAAATACTGCTGCCTCAATAGAACAATTTTTGTTTTCAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74021641 80 -  99763055 TAGGACTGGATTCTAAGGGTGGTTTTTACCTCTAATATCCAAATACTGCTGCCTCAATAGAACAATTTTTGTTTTCAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        70469 80 -    281578 TAGGACTGGATTCTAAGGGTGGTTTTTACCTCTAATATCCAAATACTGCTGCTGCAATAGAACAATTTTTGTTTTCAAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926576 80 + 121039945 TAGAACTAGATTCTAAGGGTGCTCTTTACCTCTAATACCCAAATACTGCTGCCTCAATAGAACAATTTTTGTTTTCAAAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165550684 75 - 171882078 TTGGACT-----ATAAGGGTGCTCTTTACCTCTAATATCCAAATACAGATGCCTCAATAGAACAATTTTTGTTTTCAAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       396447 75 +   2379783 TTGGACT-----ATAAGGGTGCTCTTTACCTCTAATATCCAAATACAGATGCCTCAATAGAACAATTTTTGTTTTCAAAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       366250 75 +   4116138 TTGGACT-----GTAAGGGTGCTCTTTACCTCTAATATCCAAATACAGATGCCTCAATAGAACAATTTTTGTTTTCAAAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797799 80 +  58131712 TTGGACTAGACCATAAGGGTGCTCTTTACCTCTAATATCCAAATACAGATGCCTCAATAGAACAATTTTTGTTTTCAAAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413745 75 -   3636681 TTGGACT-----ATAAGGGTGCTCTTTACCTCTAATATCCAAATACAGATGCCTCAATAGAACAATTTTTGTTTTCAAAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392866 80 -   4457520 TTGGACTAGACAATAAGGGTGCTCTTTACCTGTAATATCCAAGTTCAAATGCCTCAATAGAACAATTTTTGTTTTCAAAA
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116199199 3660 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e otoGar3.GL873689             350635  0 +   3845361 C
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e rheMac8.chr7              164229686 750 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55206822 863 + 190850796 I

a score=233259.000000
s hg38.chr15_KI270851v1_alt    144070 44 +    263054 TTCCATGATAAAAAAGA-TGCAGTAACCCTGTATGTGGCATTTTG
s panTro5.chr15              73718119 44 -  83230942 TTCCATGATAAAAAAGA-TGTAGTAACCCTGTATGTGACATTTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74021721 44 -  99763055 TTCCATGATAAAAAAGA-TGTAGTAACCCTGTATGTGACATTTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        70549 44 -    281578 TTCCATGATAAAAAAGA-TGTAGTAACCCTGTATGTGACATTTTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926656 44 + 121039945 TTCCATGATAAAAAAGA-TGTAGTAACCCTGTATATGACATTTTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165550759 44 - 171882078 TTCAATGATAAAAAAGA-TGTGGTAACCCTGTATATGACATTTTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       396522 44 +   2379783 TTCAATGATAAAAAAGA-TGTGGTAACCCTGTATATGACATTTTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       366325 44 +   4116138 TTCAATGATAAAAAAGA-TGTGGTAACCCTGTATATGACATTTTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797879 44 +  58131712 TTCAATGATAAAAAAGA-TGTGGTAACCCTGTATATGACATTTTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413820 44 -   3636681 TTCAGTGATAAAAAAGA-TGTGGTAACCCTGTATATGACATTTTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392946 44 -   4457520 TTCAATGATAAAAAAGA-TGTGGTAACCCTATATATGACATTTTG
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             350635 45 +   3845361 TTCCATGAAAAAAGAGAGTTTGGTGATCCTGTGTGTGACCTTTTG
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116199199 3660 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e rheMac8.chr7              164229686 750 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55206822 863 + 190850796 I

a score=175137.000000
s hg38.chr15_KI270851v1_alt    144114 32 +    263054 TCAGGTTAATTAAGAGCATTTTGCAGCA---------------------------------AAAA
s panTro5.chr15              73718163 31 -  83230942 TCAGGTTAATTGAGAGCATTTTGCAGC----------------------------------AAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74021765 31 -  99763055 TCAGGTTAATTGAGAGCATTTTGCAGC----------------------------------AAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        70593 31 -    281578 TCAGGTTAATTGAGAGCATTTTGCAGC----------------------------------AAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926700 31 + 121039945 TCAGGTTAATTGAGAGCATTTTGCAGC----------------------------------AAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164230436 31 - 169600520 TCAGGTTAATTGAGAGCATTATGCAGC----------------------------------AAAA
i rheMac8.chr7              I 750 I 357
s macFas5.chr7              165550803 31 - 171882078 TCAGGTTAATTGAGAGCATTATGCAGC----------------------------------AAAA
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011934v1       396566 31 +   2379783 TCAGGTTAATTGAGAGCATTATGCAGC----------------------------------AAAA
i macNem1.NW_012011934v1    C 0 I 1
s cerAty1.NW_012001462v1       366369 30 +   4116138 TCAGGTTAATTGAGAGCATTATGCAGC----------------------------------AAA-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797923 30 +  58131712 TCAGGTTAATTGAGAGCATTATGCAGC----------------------------------AAA-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413864 30 -   3636681 TCAGGTTAATTGAGAGCATTATGCAGC----------------------------------AAA-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       392990 31 -   4457520 TCAGGTTAATTGAGAGCATTATGCAGC----------------------------------AAAA
i colAng1.NW_012115278v1    C 0 I 1
s otoGar3.GL873689             350680 65 +   3845361 TCAGGTTAATTCAAAGCATTGTGCAGCACTTTTAATTTAGATGTCCTGTGTTGGCATTTAGAAAA
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116199199 3660 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55206822 863 + 190850796 I

a score=3276.000000
s hg38.chr15_KI270851v1_alt    144146 1 +    263054 A
s panTro5.chr15              73718194 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74021796 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        70624 1 -    281578 A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926731 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s cerAty1.NW_012001462v1       366399 1 +   4116138 A
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797953 1 +  58131712 A
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413894 1 -   3636681 A
i manLeu1.NW_012102332v1    C 0 C 0
s otoGar3.GL873689             350745 1 +   3845361 A
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116199199 3660 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e colAng1.NW_012115278v1       393021 1 -   4457520 I
e macNem1.NW_012011934v1       396597 1 +   2379783 I
e rheMac8.chr7              164230467 357 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55206822 863 + 190850796 I
e macFas5.chr7              165550834 1 - 171882078 I

a score=12813.000000
s hg38.chr15_KI270851v1_alt    144147 5 +    263054 AAAAG
s panTro5.chr15              73718195 5 -  83230942 AAATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74021797 5 -  99763055 AAATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        70625 4 -    281578 AAA-T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926732 5 + 121039945 AAAAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165550835 4 - 171882078 -AAAG
i macFas5.chr7              I 1 I 1
s macNem1.NW_012011934v1       396598 4 +   2379783 -AAAG
i macNem1.NW_012011934v1    I 1 C 0
s cerAty1.NW_012001462v1       366400 5 +   4116138 AAAAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53797954 5 +  58131712 AAAAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413895 5 -   3636681 AAAAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       393022 4 -   4457520 -AAAG
i colAng1.NW_012115278v1    I 1 C 0
s calJac3.chr3               55207685 4 + 190850796 -aaag
i calJac3.chr3              I 863 I 1
s otoGar3.GL873689             350746 5 +   3845361 AAATG
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116199199 3660 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e cebCap1.NW_016107707v1       286724 886 -   2086007 I
e rheMac8.chr7              164230467 357 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=368852.000000
s hg38.chr15_KI270851v1_alt    144152 69 +    263054 ttttttgtagaggcagggtct-tgctttgttgtccaggctgg----------tctagaacttct-------gcattcaagtgatcct
s panTro5.chr15              73718200 69 -  83230942 ttttttgtagaggcagggtct-ttctttgttgtccaggctgg----------tctagaacacct-------gcattcaagtgatcct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74021802 69 -  99763055 ttttttgtagaagcagggtct-ttctttgttgtccaggctgg----------tctagaacacct-------gcattcaagtgatcct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        70629 69 -    281578 ttttttgtagagggagggtct-ttctttgttgtccaggctgg----------tctagaactcct-------gcattcaagtgattct
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926737 69 + 121039945 ttttttgtagagacagggtct-tgctttgttgtccaggctgg----------tctagaactcct-------gcattcaagtgatcct
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165550840 69 - 171882078 ttttttgtagagacagcgtct-tggtttgttgtctaggctgg----------tgtaaaactcct-------gcattcaagggatcct
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011934v1       396602 69 +   2379783 ttttttgtagagacagcgtct-tggtttgttgtctaggctgg----------tgtaaaactcct-------gcattcaagggatcct
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       366405 69 +   4116138 ttttttgtagagacagcgtct-tggtttgttgtccaggctgg----------tgtacaactcct-------gcattcaagggatcct
i cerAty1.NW_012001462v1    C 0 I 61
s chlSab2.chr26              53797959 69 +  58131712 ttttttgtagagacagggtct-tggtttgttgtccaggctgg----------tgtaaaactcct-------gcattcaagggatcct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413900 69 -   3636681 ttttttgtagagacagcgtct-tggtttgttgtccaggctgg----------tgtacaactcct-------gcattcaagggatcct
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       393026 67 -   4457520 ttttttgtagagacagggtct-tggtttgttgtccaggctg------------gtagaactcct-------gcattcaagagatcct
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55207690 66 + 190850796 ttttttctagagacagggtct-tgctttgttacccaggctag----------tctagaa---ct-------acattcaagtgatcat
i calJac3.chr3              I 1 C 0
s cebCap1.NW_016107707v1       287610 66 -   2086007 ttttttctagagacagggtct-gtctttgttacccagcctag----------tctagag---ct-------gcattcaagtgatctt
i cebCap1.NW_016107707v1    I 886 C 0
s otoGar3.GL873689             350751 87 +   3845361 TTCAATTGAAAACTTGACTCTATTGTTTCTTTTTAAGGGAGGAAACCCAAAAGATAAAATGTCCCATTGTGCCTTTTTAGTAATGCT
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116199199 3660 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e rheMac8.chr7              164230467 357 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=1396278.000000
s hg38.chr15_KI270851v1_alt    144221 326 +    263054 cctgccttggcctcccaa--agtgctgtgattagatgtgtgagccactgtgcctggccTGGTGTTTTAAAGAACT--------------------------------------AACTTTTAACTTTGGTTCTTGG-AAAAGACTAGCAATACTTGTTAT------------AAAAAAAAGGAAAAGGGTTTA------GCCGTAGGAC---------TTTGATGACAATTCC----tttttt-----ttttttttt------------------------------------------------------------------------ttttttg-agacagagt---ctcactctgttgcccaggttggagtacagtggcactatctcagctcactgcaacctcca-ctcccaggttcaagccattctcgtgcctcagcctcctaagtggctggaattacaagtgtg----------------------caccaccacacc
s panTro5.chr15              73718269 323 -  83230942 cctgccttggcctcccaa--agtgctgtgattacatgtgtgagccactgtgcctggccTGGTGTTTTAGAGAACT--------------------------------------AACTTTTAACTTTGGTTCTTGG-AAAAGACTAGTAATACTAGTTATT----------AAAAAAAAAGGAAAAGGGTTTA------GCCGTAGGAC---------TTTGATGACAATTCC---------------ttttttttt------------------------------------------------------------------------ttttttg-agacagagt---ctcactctgttgcccaggttggagtacggtggcagtatctcagctcactgcaacctccacctcccaggttcaagccattctcatgcctcagcctcctaagtggctggaattacaagtgtg----------------------caccaccacacc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74021871 321 -  99763055 cctgccttggcctcccaa--agtgctgtgattacatgtgtgagccactgtgcctggccTGGTGTTTTAGAGAACT--------------------------------------AACTTTTAACTTTGGTTCTTGG-AAAAGACTAGTAATACTAGTTATT-----------AAAAAAAAGGAAAAGGGTTTA------GCCGTAGGAC---------TTTGATGACAATTCC---------------ttttttttt------------------------------------------------------------------------ttttttgtagac--agt---ctcactctgttgcccaggttggagtacagtggcagtatctcagctcactgcaacctccacctcccaggttcaagccattctcatgcctcagcctcctaagtggctggaattacaagtgtg----------------------caccaccacacc
i panPan2.chr15             C 0 I 430
s gorGor5.CYUI01000141v1        70698 330 -    281578 cctgccttggcctcccaa--agtgctgtgattacatgtgtgagctactgtgcctggccTGGTGTTTTAAAGAACT--------------------------------------AACTTTTAACTTTGCTTCTTGG-AAAAGACTAGTAATACTAGTTATA----------AAAAAAAAAGGAAAAGGGTTTA------GCCGTAGGAC---------TTTGATGACAATTCC---ttttttt-----ttttttttt------------------------------------------------------------------------ttttttg-agacagagt---ctcactctgtttcccaggttggagtacagtggcactatctcagctcactgcaacctccacctcccaggttcaagccattctcatgcctcagcctcctaagtggctggaattacaagtggg----------------------caccaccacacc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70926806 341 + 121039945 cctgccttggcctcccaa--agtgctgtgattacatgtgtgagccactgtgcctggccTGGTGTTTTAAAGAACT--------------------------------------AACTTTTAACTTTGGTTCTCGG-AAAAGGCTAGTAATACTAGTTATaaa--aaaaaaaaaaaaaaaGGGAAAGGGTTTA------GCCATAGGAC---------TTTGATGACAATTCCTTAtttttat-----ttttatttt------------------------------------------------------------------------ttttttg-agacaaagt---ctcactctgttgcccaggttggagtacagtggcactatctcagcttactgcaaccttcacctcccaggttcaagccattctcctgcctcagcctcctgagtggctggaattacgggcgtg----------------------caccaccacacc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165550909 313 - 171882078 cctg-----------caa--agtgctgtgattacatgtgtgagccactgtgcctggccTGTTGTTTTAAAGAACT--------------------------------------AACTTTTAACTTTGGTTCTTGG-AAAAAACTAATAATACTAGTTATAGG---aaaaaaaaaaaaaaagaaaaGGGTTTA------GCCATGGGAC---------TTTGATGACAATTCC-------ttt-----ttttttttt------------------------------------------------------------------------ttttttg-agacacagt-------ctctgttgcccaggttggaatacagtggcactgtctcagctcactgcaacctccacctcccaggttcaagccattcttgtgcttcagcctcttaagtggctagaattacaggcatg----------------------cac-----cacc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       396671 319 +   2379783 cctg-----------caa--agtgctgtgattacatgtgtgagccactgtgcctggccTGTTGTTTTAAAGAACT--------------------------------------AACTTTTAACTTTGGTTCTTGGAAAAAAACTAATAATACTAGTTATAGG-aaaaaaaaaaaaaaaaagaaaaGGGTTTA------GCCATGGGAC---------TTTGATGACAATTCC----tttttt-----ttttttttt------------------------------------------------------------------------ttttttg-agacacagt-------ctctgttgcccaggttggaatacagtggcactgtctcagctcactgcaacctccacctcccaggttcaagccattcttgtgcttcagcctcttaagtggctagaattacaggcatg----------------------cac-----cacc
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53798028 324 +  58131712 cctg-----------caa--agtgctgtgattacatgtgtgagccactgtgcctggccTGTTGTTTTAAAGAACT--------------------------------------AACTTTTAACTTTGGTTCTTGG-AAAAAACTAATAATACTAGTTATAGG--AAAAAAAAAAAAAAAAGGAAAGGGTTTA------GCCATGGGAC---------TTTGATGACAATTCC-------tttatttatttatttat------------------------------------------------------------------------ttatttg-agacacagt-------ctctgttgcccaggttggaatacagtggcactgtctcagctcactgcaacctccacctcccaggttcaagccattcttgtgcctcagcctcttaagtggctagaattacaggcatg----------------------caccaccacacc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       413969 317 -   3636681 cctg-----------caa--agtgctgtgattacatgtgtgagccactgtgcctggccTGTTGTTTTAAAGAACT--------------------------------------AACTTTTAACTTTGGTTCTTGG-AAAAAACTAATAATACTAGTTATAGG----aaaaaaaaaaaaaagaaaaGGGTTTA------GCCATGGGAC---------TTTGATGACAATTCC-------ttt-----ttttttttt------------------------------------------------------------------------ttttttg-agacacagt-------ctctgttgcccaggttggaatacagtggcactgtctcagctcactgcaacctccacctcccaggttcaagccattcttgtgcttcagcctcttaagtggctagaattacaggcatg----------------------caccaccacacc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       393093 314 -   4457520 cctg-----------caa--agtgctgtgattacatgtgtgagccactgtgcctggccTGTTGTTTTAAAGAA----------------------------------------------TAACTTTGGTTCTTGG-AAAAAACTAATAATACTAGTTACAGaaaacaaaaaaaaagaaaagaaaaGGGTTTA------GCCATGGGAC---------TTTGATGACAATTCC------tttt-----ttttttttt------------------------------------------------------------------------ttttttg-agacagagt-------ctctgttgcccaggttggagtacagtggcactgtcttagctcactgcaacctccacctcccaggttcaagccattcttgtgcctcagcctcttaagtggctagaattacaggcgtg----------------------caccaccacacc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55207756 274 + 190850796 cttgccttggcctcccaa--agtgc----------tgggtgagccactgcgcctcgccTGGTGTCTTAAGG------------------------------------------AACTTTTAACTTTGGTTCTTGG-AAAAGACTGGT--TACT------------------AAAAAAAAGGAAAACGGTTTA-------CCATAGGAC---------TTTGATGACTTTTTT------------------------------------------------------------------------------------------------TTTTTTG-AGATAGAGTAGTCTTACGCT----------------------------------------tgcaacttccacctcctgcgttcaagccattctcattcctcagcctcccaagtggctggagtcacaggcgtgacagaatcaatcaacagagatcaatcaccacacc
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       287676 379 -   2086007 cttgccttggcctcccaa--agtgc----------tgtgtgagccactgcgcctcgccTGGTGTCTTAAGGAACT--------------------------------------AACTTTTAACTTTGGTTCTTGG-AAAAGGCTGGT--TACT------------------AAAAAAAAGGAAAAGGGTTTA-------CCATAGGAT---------TTTGATGACtttttt-------ttt-----tttttttttGGCCAAAGATCCACCAGCAAAGTTGCCTTTCTTAGCATGCTGTTTAtttttttgcttttgcttttgtttttgttttttg-agatagagtagtcttacactgttggcccggctggagtacagtggcactatct-agcttactgcaacttccacctcctgggttcaacccattctcgtggcttatcttccccagtggctggaattacaggcgtg----------------------taccacaacacc
i cebCap1.NW_016107707v1    C 0 C 0
s otoGar3.GL873689             350838 357 +   3845361 -----TATGTCTACCCAAACAGTGTTGTTTTCA---------------GTACCAAACCTATCTTTATGGAGAACTTGAATAGGGATAAAAAAAAAAGCAGTATATACTTTTGCAACTTTTATCTTAAGGCTCTTT-AGAATACTA-TAACTGAATTTACTGT---------AAAATAATTGATATTTGCTAATTTGGAATTATATAACTTCATTAGTTTTTAGGAGTATTCt--------tt-----ttttttttt------------------------------------------------------------------------tttttta-agacagagc---ctcaagctgttgccctgggtagagtgctgtgtca---tcacagctcacagcaacctccaactcctgggcttaagtgattctcttgcatcagcctcccaagtagctgggactacaggtgcc----------------------cgccataccaac
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116199199 3660 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e cerAty1.NW_012001462v1       366474  61 +   4116138 I
e rheMac8.chr7              164230467 357 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=48681.000000
s hg38.chr15_KI270851v1_alt    144547 13 +    263054 cagataatttttt
s panTro5.chr15              73718592 13 -  83230942 cagataatttttt
i panTro5.chr15             C 0 I 426
s gorGor5.CYUI01000141v1        71028 13 -    281578 cagataatttttt
i gorGor5.CYUI01000141v1    C 0 I 417
s nomLeu3.chr6               70927147 12 + 121039945 -tgctaatttttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165551222 13 - 171882078 cagctaatttttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       396990 13 +   2379783 cagctaatttttt
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53798352 13 +  58131712 cagctaatttttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       414286 13 -   3636681 cagctaatttttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       393407 13 -   4457520 tagctaatatttt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55208030 13 + 190850796 gagctaagttttt
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       288055 13 -   2086007 gagctaagttttt
i cebCap1.NW_016107707v1    C 0 C 0
s otoGar3.GL873689             351195 12 +   3845361 tggctatttttt-
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116199199 3660 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e panPan2.chr15              74022192 430 -  99763055 I
e cerAty1.NW_012001462v1       366474 61 +   4116138 I
e rheMac8.chr7              164230467 357 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=9055.000000
s hg38.chr15_KI270851v1_alt    144560 4 +    263054 atat
s nomLeu3.chr6               70927159 4 + 121039945 atat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165551235 4 - 171882078 acat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       397003 4 +   2379783 acat
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53798365 4 +  58131712 acat
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       414299 4 -   3636681 acat
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       393420 4 -   4457520 acat
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55208043 4 + 190850796 gtat
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       288068 4 -   2086007 gtat
i cebCap1.NW_016107707v1    C 0 C 0
e micMur3.chr9              116199199 3660 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e otoGar3.GL873689             351207 0 +   3845361 C
e panPan2.chr15              74022192 430 -  99763055 I
e panTro5.chr15              73718605 426 -  83230942 I
e gorGor5.CYUI01000141v1        71041 417 -    281578 I
e cerAty1.NW_012001462v1       366474 61 +   4116138 I
e rheMac8.chr7              164230467 357 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=228894.000000
s hg38.chr15_KI270851v1_alt    144564 61 +    263054 --ttttagtagagatggggtttcaccatgtt---------gcccaggctggtcttgaactcctga---gctcagg
s nomLeu3.chr6               70927163 61 + 121039945 --ttttagtagagacagggtttcaccatgtt---------gcccaggctggtcttgaactcctga---gctcagg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164230824 59 - 169600520 --ttttagtagagacgggtttccaccatgtt---------gccca-gctggtc-tgaactcctaa---gctcagg
i rheMac8.chr7              I 357 C 0
s macFas5.chr7              165551239 61 - 171882078 --ttttagtagagacggggtttcaccatgtt---------gcccaggctggtcttgaactcctaa---gctcagg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       397007 64 +   2379783 --ttttagtagagacggggtttcaccatgtt---------gcccaggctggtcttgaactcctaataggctcagg
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53798369 61 +  58131712 --ttttagtagagacggggtttcaccatgtt---------gcccaggctggtcttgaactcctaa---gctcagg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       414303 61 -   3636681 --ttttagtagagacggggtttcaccatgtt---------gcccaggctggtcttgaactcctaa---gctcagg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       393424 61 -   4457520 --ttttagtagagacggggtttcaccatgtt---------gcccaggctggtctagaactcctga---gctcagg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55208047 61 + 190850796 --ttttagtagagacagggttttaccatgtt---------gctcaggctggtcttgaactcttga---gctcagg
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       288072 60 -   2086007 --ttttagtagagaca-ggttttaccatgtt---------gctcaggctggtcttcaactcctga---gctcaga
i cebCap1.NW_016107707v1    C 0 C 0
s otoGar3.GL873689             351207 60 +   3845361 ggttgtagttg------------tccttgttgtttggcaggcccaggctggatttgaacctgcca---gttctgg
i otoGar3.GL873689          C 0 I 2771
e micMur3.chr9              116199199 3660 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e panPan2.chr15              74022192 430 -  99763055 I
e panTro5.chr15              73718605 426 -  83230942 I
e gorGor5.CYUI01000141v1        71041 417 -    281578 I
e cerAty1.NW_012001462v1       366474 61 +   4116138 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=1163086.000000
s hg38.chr15_KI270851v1_alt    144625 343 +    263054 cagtccacctgccttggcctcccagagtggtgggattacagc-agtgagccactgagcccagcAgatgacaattctttatgaagaag-aaattgagtatcctgtttaaggcactcaagaaaagaaaatgtgagtaaagca-ttttttgttccagcaaaaccgacttttcagatgaaaaacacac-aaacttctc----agtgagctgtaacttaggaagtattgttctcatgagcccttccttaggaatggagtggagaaagatctttagacaactggat-gactgtagatcaacctgcaactgatgatgggcatgaaacagttatttgttaaacctagactgcatgagtgt
s nomLeu3.chr6               70927224 331 + 121039945 cagtccacccaccttggcctcccagagtgctgggattacagc-agtgagccagtgagcccagcAgatgacaattctttatgaagaag-aaattgagtaacctgtttaaggtactcaagaaaagaaaatgtgagtaaagca-ttttttgttccagcaaaaccgacttttcagatgaaaaacacac-aaacttctc----aatgagctgtaacttaggaagtattgttctcatgagcccttccttaggaa------------agatctttggacaactggat-gactgtagatcaacctgcaactgatgatgggcatgaaacagttatctgttaaacctagactgcatgagtgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164230883 332 - 169600520 caatcca-ccgcctgg--cccccaaag-tctgggattacagcaagtgagccactgagcccagcAGATGACAATTG-ttatgaagaag-aaattgagtaacctttttaaggcattca--aaaaagaaatgtgaatcaagca---tttggttccagcaaaaccgac--ttcagatgaaaaacccacaaaacttttc----aatgagctgtgac-taggaagtattgttcttatgag-ccttccttaggaaatggatagagaaagatctttggataactaggtggactgtagatccacctgcaactgatggtgggcatgaagcagtta-ttgttaaacttagactacatgagtgt
i rheMac8.chr7              C 0 I 34
s macFas5.chr7              165551300 342 - 171882078 caatccacccgccttggcctcccaaagttctgggattacagc-agtgagccactgagcccagcAGATGACAATTGtttatgaagaag-aaattgagtaacctttttaaggcattcaagaaaagaaaatgtgaatcaagca--tttttgttccagcaaaaccgacttttcagatgaaaaacccac-aaacttttc----aatgagctgtgacttaggaagtattgttcttatgagcccttccttaggaatggagtagagaaagatctttggataactaggt-gactgtagatccacctgcaactgatggtgggcatgaagcagttatttgttaaacttagactacatgagtgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       397071 342 +   2379783 caatccgcccgccttggcctcccaaagttctgggattacagc-agtgagccactgagcccagcAGATGACAATTGtttatgaagaag-aaattgagtaacctttttaaggcattcaagaaaagaaaatgtgaatcaagca--tttttgttccagcaaaaccgacttttcagatgaaaaacccac-aaacttttc----aatgagctgtgacttaggaagtattgttcttatgagcccttccttaggaatggagtagagaaagatctttggataactaggt-gactatagatcaacctgcaactgatggtgggcatgaagcagttatttgttaaacttagactacatgagtgt
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53798430 342 +  58131712 caatccacctgccttggcctcccaaagttctgggattacagc-agtgagccactgagcccagcAgatgacaattctttatgaagaag-aaattaagtaacctgtttaaggcattcaagaaaagaaaatgtgaatcaagca--tttttgttccagcaaaaccgactttttagatgaaaaaccccc-aaacttttc----aatgagctgtgacttaggaagtattgttcttatgagcccttccttaggaatggagtagagaaagatctttggataactaggt-gactgtagatcaacctgcaactgatggtgggcgtgaaacagttatttgttaaacttagactacatgagtgt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       414364 342 -   3636681 cagtccacccgccttggcctcccaaagttctgggattacagc-agtgagccactgagcccagcAgatgacaattctttatgaagaag-aaattgagtaacctttttaaggcattcaagaaaagaaaatgtgaatcaagca--tttttgttctagcaaaaccgacttttcagatgaaaaacccac-aaacttttc----agtgagctgtgacttaggaactattgttcttatgagcccttccttaggaatggagtagagaaagatctttggataactaggt-gactgtagatcaacctgcaactgatggtgggcatgacgcagttatttgttaaacttagactacatgagtgt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       393485 343 -   4457520 caatccacccaccttggcctcccaaagttctgggattacagc-agtgagccactgagcccagcAgatgacaattctttatgaagaag-aaattgagtaacctgtttaaggcactcaagaaaagaaaatgtgaatcaagca-ttttttgttccagcaaaaccgacttttcagatgaaaaacccat-aaacttttc----aatgagctgtaacttaggaagtattgatcttatgagcccttccttaggaatggagtagagaaagatctttggataactgggt-ggctgtagatcaacctgcaactgatggtgggcatgaagcagttatttgttaaacttagactacatgagtat
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55208108 349 + 190850796 caattcaccctccttggcctcccaaagtgctgggattatagg-agtgagccagtgtgtccagcAGATGACAGTTCTTTATGAAGAAGAAaattgagtaacctatttaaggcactcaggaaaagaaaatgtgagtcaagcatttttttgtttcagcaaaaccgatttgtcggatgacaaagacac-agtcttaccgatgagtgagtcataacttaggaagaattgttcttatgagcccttccttagaaatggagtagagaaagatctttggataactgggt-gactgtagatcaacctgcaactgatggtgggcatGATACAGTTATTCATAAAATGTAGACTACATGAATGT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       288132 343 -   2086007 caattcacccaccttggcctcgcaaagtgctgggattacaga-agtgagccactgtgtccagcAgatgacaattctttatgaagaagaaaattgagtaacctatttaaggcaatcaagaaaagaaaatgtgagtcaagca-tcttttgttctagcaaaaccgatttgtcagatgaaaaagacac-agacttatc----aatgagccataacttagggagtattgttcttatgagcccttcctcagaaattgagtagagaaagatctttggataactgggc-agctgtagattaacctacaactgatggtgggcatgacacagtta-ccgtaaaacgtagactacatgaacgt
i cebCap1.NW_016107707v1    C 0 C 0
e micMur3.chr9              116199199 3660 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e panPan2.chr15              74022192 430 -  99763055 I
e panTro5.chr15              73718605 426 -  83230942 I
e gorGor5.CYUI01000141v1        71041 417 -    281578 I
e cerAty1.NW_012001462v1       366474  61 +   4116138 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=59495.000000
s hg38.chr15_KI270851v1_alt    144968 24 +    263054 taagggagagagcatggcatagcc
s nomLeu3.chr6               70927555 24 + 121039945 taagggagagagcatggcctagct
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165551642 24 - 171882078 taagggagagagcgtagagtatct
i macFas5.chr7              C 0 I 12
s macNem1.NW_012011934v1       397413 24 +   2379783 taagggagagagcgtagagtatct
i macNem1.NW_012011934v1    C 0 I 12
s chlSab2.chr26              53798772 24 +  58131712 taagggagagagcgtagagtatct
i chlSab2.chr26             C 0 I 12
s manLeu1.NW_012102332v1       414706 24 -   3636681 taagggagagagcgtagagtatct
i manLeu1.NW_012102332v1    C 0 I 12
s colAng1.NW_012115278v1       393828 24 -   4457520 taagggagagagcgtagagtatct
i colAng1.NW_012115278v1    C 0 I 12
s calJac3.chr3               55208457 24 + 190850796 TAACGGAGAGAGCATAGAACTGCT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       288475 24 -   2086007 taaaggagagagcatagaattgct
i cebCap1.NW_016107707v1    C 0 C 0
e micMur3.chr9              116199199 3660 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e panPan2.chr15              74022192 430 -  99763055 I
e panTro5.chr15              73718605 426 -  83230942 I
e gorGor5.CYUI01000141v1        71041 417 -    281578 I
e cerAty1.NW_012001462v1       366474 61 +   4116138 I
e rheMac8.chr7              164231215 34 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=531475.000000
s hg38.chr15_KI270851v1_alt    144992 155 +    263054 atgtgcttagacattgtagattatggttgtaactgttaT-GCAGT------Tctgttaatctcatccatc--------ca-ttttgtattttcatttctagagattccatttgagtcc-tttttatatcttctgtttcactccttataacattcatgctttccttctattag
s nomLeu3.chr6               70927579 170 + 121039945 atgtgcttagacattgtagattatggttgtaactgttat-gcagtgtttcttctgttaatctcatccatcacaattttcacttttgtattttcacttctagagattccatttgagtcc-tttttatatcttctgtttcactccttataacattcttgctttccttctattag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164231249 167 - 169600520 atatgcttaga-attgtagattatggttgtaactgttaTGGCAGTG-TTCATctgttaacctcatccatcacaatttcc-cttttgtattttca-ttctggagattccatttgagtcc-tttttatatcttctgtttcaccccttatcacattcatgctttccttctattag
i rheMac8.chr7              I 34 C 0
s macFas5.chr7              165551678 170 - 171882078 atatgcttagacattgtagattatggttgtaactgttat-gcagtgtttcatctgttaacctcatccatcacaatttccgcttttgtattttcatttctggagattccatttgagtcc-tttttatatcttctgtttcaccccttatcacattcatgctttccttctattag
i macFas5.chr7              I 12 C 0
s macNem1.NW_012011934v1       397449 170 +   2379783 atatgcttagacattgtagattatggttgtaactgttat-gcagtgtttcatctgttaacctcatccatcacaatttccacttttgtattttcatttctggagattccatttgagtcc-tttttatatcttctgtttcaccccttatcacattcatgctttccttctattag
i macNem1.NW_012011934v1    I 12 C 0
s chlSab2.chr26              53798808 170 +  58131712 atatgcttagacattgtagattatggttgtaactgttaC-GCAGtgtttcatctgttaacctcatccatcacaatttccacttttgtattttcatttctggagattccatttgagtcc-tttttatatcttctgtttcactccttatcacattcatgctttccttctattag
i chlSab2.chr26             I 12 C 0
s manLeu1.NW_012102332v1       414742 170 -   3636681 atatgcttagacattgtagattatgggtgtaactgttat-gcagtgtttcatctgttaacctcatccatcacaatttccacttttgtattttcatttttggagattccatctgagtcc-tttttatatcttctgttttactccttatcacattcatgctttccttctattag
i manLeu1.NW_012102332v1    I 12 C 0
s colAng1.NW_012115278v1       393864 170 -   4457520 atatgcttagacattgtagattatggttgtaactgttaT-TCAGtgtttcatctgttaa-cttatccatcacaatttccacttttgtattttcatttctggagattccatttgagtccttttttatatcttctgtttcactccttatcacattcatgctttccttctattag
i colAng1.NW_012115278v1    I 12 C 0
s calJac3.chr3               55208481 142 + 190850796 ATATGCTTTGAGGT----------------------------AGTGTTTAATCTGTTAATCTCATCCATCACAATTT-CACTTTTGTATTTTCATTTCTAGACATTACATTTGGGTTC-TTTTTGTATCATCTGTTTTACTCCTTATTACATTCATAGTTTCCTTCTATTAG
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       288499 165 -   2086007 gtatgcttagaggt---agattatggttg-aaccgttaT-GCAGTGTTTAATCTGTTAATCTCATCCATCACAATTT-CACTTTTGTATTTTCATTTCCAGAGATTACATTTGGATTC-TTTTTGTTTCGTCTGTTTCAATCCTTACCGCATTCATAATATCCTTCTATTAG
i cebCap1.NW_016107707v1    C 0 I 363
e micMur3.chr9              116199199 3660 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e panPan2.chr15              74022192 430 -  99763055 I
e panTro5.chr15              73718605 426 -  83230942 I
e gorGor5.CYUI01000141v1        71041 417 -    281578 I
e cerAty1.NW_012001462v1       366474  61 +   4116138 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=2552.000000
s hg38.chr15_KI270851v1_alt    145147 1 +    263054 t
s nomLeu3.chr6               70927749 1 + 121039945 c
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164231416 1 - 169600520 c
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165551848 1 - 171882078 c
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       397619 1 +   2379783 c
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53798978 1 +  58131712 c
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       414912 1 -   3636681 c
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       394034 1 -   4457520 c
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55208623 1 + 190850796 C
i calJac3.chr3              C 0 C 0
e micMur3.chr9              116199199 3660 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       352041 2895 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e cebCap1.NW_016107707v1       288664 363 -   2086007 I
e panPan2.chr15              74022192 430 -  99763055 I
e panTro5.chr15              73718605 426 -  83230942 I
e gorGor5.CYUI01000141v1        71041 417 -    281578 I
e cerAty1.NW_012001462v1       366474 61 +   4116138 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=58954.000000
s hg38.chr15_KI270851v1_alt    145148 14 +    263054 atagggagcatttc
s nomLeu3.chr6               70927750 14 + 121039945 atagggagcatttc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164231417 12 - 169600520 ttagggagc--ttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165551849 14 - 171882078 ttagggagcatttc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       397620 14 +   2379783 ttagggagcatttc
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53798979 14 +  58131712 atagggagcatttc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       414913 14 -   3636681 atagggagcatttc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       394035 14 -   4457520 atagggggcatttc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55208624 14 + 190850796 ATAGGGAGCATTTC
i calJac3.chr3              C 0 I 328
s cebCap1.NW_016107707v1       289027 14 -   2086007 ATAGGGAGCATTTC
i cebCap1.NW_016107707v1    I 363 C 0
s aotNan1.NW_018503298v1       354936 14 +   3831555 atagggagcatttc
i aotNan1.NW_018503298v1    I 2895 C 0
e micMur3.chr9              116199199 3660 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e panPan2.chr15              74022192 430 -  99763055 I
e panTro5.chr15              73718605 426 -  83230942 I
e gorGor5.CYUI01000141v1        71041 417 -    281578 I
e cerAty1.NW_012001462v1       366474 61 +   4116138 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=2518802.000000
s hg38.chr15_KI270851v1_alt    145162 617 +    263054 tgtaagagagcttttaatgtccttgtctgtgaattctgtaatctctgatcacttctagatc-catctctgttgattgattctgtcatttctattgattgattgccctagttatgggggcatggttgta-tgc-ctgctaatttttgattgaatgctaggc---attaattttatcttctgtgcagga--ttttgtttta-tttttttaaagagcc-ttag---ttttcttctgccatacatgtaagttacatggggtcagtttgatcttttcaaagcttgattctgaggtttgttagg-ctgatccacacaggctttactcttgggctcatttatccatacaacgaaggcaatactgttctcaggactccacctgatgcttggtgtatgagaagatctttctttccttgtttgtggaaacacaggcttttcccagac--tatgcatcatggcagtgctgcttattactttctagtgctgctttccccagtattccatagttt-tcttaacctatgctcagagtagtactcagacagatactcaaggggcccctccactcatctctggagctTGCTGTATTCTTGTCATTTGGCCTACGTATAGCTGAtctgtctcctgagctcagcaagttctt
s nomLeu3.chr6               70927764 617 + 121039945 tgtaagagagcttttaatgtccttgtctg--aattctgtaatctctgatcacttctagatc-catctctgttgattgattctgtcatttgtattgattgattgccctagttatggggggatggttgta-tgc-ctgctaatttttgattgaatgctagac---agtaattttatgttctgtgcagga--ttttgtttta-tttttttaaagagcccttag---ttttgttctgccacacatgtaagttacatggggtcagtttgatcttttcaaagcttgattctgaggtttgttagggctgatccacacagcctttactcttgggctcatttatccatactgtgaaggcaatactcttctcaggactccatctgatgcttggtgtatgagaagatctttctgtccttgtttgtggaaacacaggcttttaccagac--tatgcatcatggcgatgctgcttgttactttctagtgctgctttccccagtattctgtagttt-tcttaacctgtgcttagagcagtactcagacagatgctcaaggggcccctcaactcatctctggagcttgttgtattcttgtcatttggcctacgtatggctgatctgtctcctgagctcagcaagttctt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164231429 598 - 169600520 cgta--agaacttttaatgt-cttgtctgtgaattctgtaatctctgatcacttctagagcgcatctctgttgattgattcggtcacttctattgattgattgccgtggttat-ggggcatg--tgcattgcgctgctaattttga--tgaatgctagaca--ataaatttta---gcta-gcagga--ttttggttta---tttttaaagagcc-ttag---tttggttctgccatacgtgtaagtca----gggtcagtttgatc--ttcaaagcttgattctaagg-ttgtt-gggctgatcgacacagccttta-tcttgggctgatttatccatactgctaaggcaatactcttctcaggactccg-ctgat-cttggtgtat-agaatgtctttctgtccttgtttgtggaaacacaggcttttcctagactgtgtgcatcatggcaatgctgcttattactttctagtgcttctttccccagtgttccatagttt-tcttaacctatgcccagagtagtactcagacagacactcaaggggcgcctccactcatctctagagtttgctgtcgtcttgttctttggcctaagtttagctgatctgtcacctgaactcagcaagatctt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165551863 620 - 171882078 tgtaagagaacttttaatgtccttgtctgtgaattctgtaatctctgatcacttctagagc-catctctgttgattgattcggtcacttctattgattgattgccgtagttatgggggcatggttgca-tgc-ctgctaatttttgattgaatgctagac---ataaattttatgttctatgcagga--ttttgtttta-tttttttaaagagcc-ttag---ttttgttctgccatacgtgtaagttacatggggtcagtttgatcttttcaaagcttgattctaaggtttgttagggctgatcgacacagcctttactcttgggctgatttatccatactgctaaggcaatactcttctcaggactccgcctgatgcttggtgtatgagaatgtctttctgtccttgtttgtggaaacacaggcttttcctagactgtgtgcatcatggcaatgctgcttattactttctagtgcttctttccccagtgttccgtagttt-tcttaacctatgcccagagtagtactcagacagacactcaaggggcgcctccactcatctctagagtttgctgtcgtcttgttctttggcctaagtatagctgatctgtcacctgaactcagcaagatctt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       397634 620 +   2379783 tgtaagagaacttttaatgtccttgtctgtgaattctgtaatctctgatcacttctagagc-catctctgttgattgattcggtcacttctattgattgattgccgtagttatgggggcatggttgca-tgc-ctgctaatttttgattgaatgctagac---ataaattttatgttctatgcagga--ttttgtttta-tttttttaaagagcc-ttag---ttttgttctgccatacgtgtaagttacatggggtcagtttgatcttttcaaagcttgattctaaggtttgttagggctgatcgacacagcctttactcttgggctgatttatccatactgctaaggcaatactcttctcaggactccgcctgatgcttggtgtatgagaatgtctttctgtccttgtttgtggaaacacaggcttttcccagactgtgtgcatcatggcagtgctgcttattactttctagtgcttctttccccagtgttccgtagttt-tcttaacctatgcccagagtagtactcagacagacactcaaggggcccctccactcatctctagagtttgctgtcgtcttgttctttggcctaagtatagctgatctgtcacctgaactcagcaagatctt
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53798993 611 +  58131712 tgtaagagaacttttaatgtccttgtctgtgaattctgtaatctctgatcacttctagatc-catctctgttgattgattctgtcacgtct----attgattgccatagttatgggggcatggttgcg-tgc-ctgctaatttttgattgaatgctagac---ataaattttatgttctatgca-ga--ttttgtttta-tttttttaaagagcc-ttag---ttttgttctgccatacgtgtaagttacatggggtcagtttgatcttttcaaagcttgattctaaggtttgttagggctgatcgacacagggtttactcttgggctcatttatccatactgctaaggcaatactcttctcaggactccgcctgatgcttggtgtatgagaaggtctttctgtccttgtttgtggaaacgcaggcttttcccagactgtgtgcatcatggcgatgctgcttattactttctagtgcttctttccccagtgttccgtagttt-tcttaacctatgcccagagtagtact----cagacactcaaggggcctctccgctcatctctagagcttgctgtcatcttgttctttggcctaagtatagctgatctgtcacctgaactcagcaagatctt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       414927 621 -   3636681 tgtaagagaacttttaatgtccttgtctgtgaattctgtaatctctgatcacttctagatc-catctctgttgattgagtctgtcacttctgttgattgattgccgtagttatgggggcatggttgca-tgc-ctgctaatttttgattgaatgctagac---ataaattttatgttctatgcagga--ttttgttttattttttttaaagagcc-ttag---ttttgttctgccatatgtgtaagttacatggggtcagtttgatcttttcaaagcttgattctaaggtttgttcgggctgatcgacacagcctttactcttgggctgatttatccatactgctaaggcaatactcttctcaggactccgcctgttgcttggtgtatgagaaggtctttctgtccttgtttgtggaaacgcaggcttttccgagactgtgtgcatcatggcaatgctgcttatttgtttctagtgcttctttccccagtgttccgtagttt-tcttaacctatgcccagagtagtactcagacagacactcaaggggcccctccactcatctctagagcttgctgtcgtcttgttctttggcctaagtatagctgatctgtcacctgaactcagcaacatctt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       394049 620 -   4457520 tgtaaaagaacttttaatgtccttgtctgtgaattctgtaatctctgatcacttctagatc-catctctgttgattgattctgtcacttctattgattgattgccctagttatgggggcatggttgca-tgc-ctgctaatttttgattgaatgctcgac---ataaattttatgttctatgcagga--ttttgtttta-tttttttaaagagcc-ttag---ttttgttctgctatacatgtaagttacatggggtcagtttgatcttttcaaagcttgattctaaggtttgttagggctgatcgacacagtctttactcttgggctcatttatccatactgctaaggcaatactcttctgaggactccgcctgatgcttggtgtatgagaaggtctttctgtccttgtttgtggaaacacaggcttttcccagactgtgtgcatcatggcgatgctgcttattactttctagtgcttctttccccagtattccgtagttt-tcttaacctatgcccagagtagtactcagatagacactcaaggggcccctccactcatctctagagcttgctgtcGTCTTGTCCTTTGGCCTAAGTATAGCTGAtctgtcacctgaactcagcaagatctt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55208966 616 + 190850796 TGTAAGAGAGCttttaatgtccttgtctatgaatactctaatctcctatcacttctagatt-catctctgttgattgattctgtcatttctgttgattgattgccctgcttatgggggcatgcttgca-tgc-ctgctaatatttgattgaatgctagacatcataaattttatgttctgtgaagga--tttt-------ttttctttgagaacc-ttagtttttttgttctgccatgcatctaagttacttggggtcagtttgatctctttgaaggttgattataaggtttcttagggctgatccacacagcctttactctggggctaatttatccatactactaaggcaatatgcttcttaggactccacgtgatgcttggtgtattaaaaggtctttctgtccttgtttgtggaaacacaggcttttcccaggctgtgtgcgtcatggtgatactgcatattcctttctagtgcttctttcctcagccttccatactttcccttagcctatgcccagagcagtact----cagagactcaagggg-ccctccactcatctccagagcttgctgtattcttgccatttgacctatgtatagccgatctgtctcttgaacgcggcaagacctt
i calJac3.chr3              I 328 C 0
s cebCap1.NW_016107707v1       289041 616 -   2086007 CGTAAGAGAGCttttaatgtccttgtctgtgaatactgtaatctcttatcacttgtagatt-catctctgttgattgattctgtcatttctgttgattgattgccccgcttatgggggcatgcctgca-tgc-ctgctaatttttgattgaaagctagacattataaattttatgttccgtgaagga--tttt-------ttttctttaagaacc-ttagtttttttgttctgccatgtctctaagttacttggggtcagtttgatctctttgaagcttgattctaaggtttgttagggctgatccacacagcctttactctggggccaatttatccataccactaaggcgatatgcttcttaggactccacctgatgcttggtgtattagaaggtctctctgtccttgtttgtggaaatgcaggcttttcccaggctgtgtgcatcgtggtgatactgcatattcctttctagtgcgtcttttctcagctttccatacttt-tcttagcctatgcccagagcagtaca----caaagactcaaggggcccctccactcatctccagagcttgctgtattctcgccgtttggcctacgtatagctgatctgtctcctgaacacagcaagacctt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       354950 617 +   3831555 tgtaagagagctttaaatgtccttgtctgtgagtactgtaatctcttatcacttctagatt-catctctgttgattgattctgtcatttttcttgattgattgccctgcttat-ggggcatgcttgca-tgc-ctgctaatttttgattgaatgctagacattataaattttatgttctgtgaaggatttttt-------ttttctttaagaacc-ttagtctttttgttctgccatgcatctaagttacttggggtcagtttgatctctttgaagcttgattctaaggtttgttagggctgatccacacagcctttactctggggctaatttatccatactactaaggcaatatgcttcttaggactccacctgatgcttggtgtattagaaggtccttctgtccttgtttgtggaaacacaggcttttcccaggccgtgtgcatcatggtgatactgcatattcctttctagtgcttctttcctcagccttccatacttt-gcttagcctatgcccagggcagtact----caaagactcaaggggcccctccactcatctccagaACTTGCTGTATTCTTGCCATTTGGCCTGCGTATAGCTGAtctgtctcctgaacacagcgagacctt
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116199199 3660 + 116334831 I
e proCoq1.NW_012148396v1     13426550 4324 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e panPan2.chr15              74022192 430 -  99763055 I
e panTro5.chr15              73718605 426 -  83230942 I
e gorGor5.CYUI01000141v1        71041 417 -    281578 I
e cerAty1.NW_012001462v1       366474  61 +   4116138 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=1686149.000000
s hg38.chr15_KI270851v1_alt    145779 276 +    263054 tgggctctatttgggttcccctttcctgtgctgcagcctggaagctgcttctgggcagtgtttcccttctctcaggcatcccagctctgggctgtctgttgtccagtttttggtaacagcttttcggtatattctgtctggttttctagttgattATAGCAAGGAAGTGATTTCTACAGAATTCATCCTTTATAGGTGGAGGAAGCACAGGCCTTCccaatctgtttttaatcaaatccattgagttttaaatttt-actattatatttttctattc
s nomLeu3.chr6               70928381 275 + 121039945 tgggctttatttgggttcccctttcctgtgctgcagcctgaaagctgcttctgggcagtgtttcccttctct-gtgtttcccagctctgggctgtctgttgtccagtttttggtaacagctttttggtatattctgtccggttttctagttgattATAGCAAGGAAGCAATTTCTACAGAATTAATCCTTTATAGGTGGAGGACGCACAGGCCTTCccaatctgtttttaatcaaatccattgagttttaaatttt-actattatatttttctattc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164232027 275 - 169600520 tgggctctgtttgggttccgctttcctgtgctgcagcctggaagctgcttctgggcagtgttt-ccttctcttagggatcccagctctgggctgtctgttgtccagtttttggtaacaccttttcggtatattctgtccagttttctagttgattatagcaagaaagtaaTTTCTACATAATTAATCCTTTATAGGCGAAGGAAGCACAGGCCTTCccagtctgtttttaatcaaatccattgagttttaaatttt-actattgtatttttatattc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165552483 275 - 171882078 tgggctctgtttgggttccgctttcctgtgctgcagcctggaagctgcttctgggcagtgttt-ccttctcttagggatcccagctctgggctgtctgttgtccagtttttggtaacaccttttcggtatattctgtccagttttctagttgattatagcaagaaagtaaTTTCTACATAATTAATCCTTTATAGGCGAAGGAAGCACAGGCCTTCccagtctgtttttaatcaaatccattgagttttaaatttt-actattgtatttttatattc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       398254 275 +   2379783 tgggctctgtttggggtccgctttcctgtgctgcagcctggaagctgcttctgggcagtgttt-ccttctcttagggatcccagctctgggctgtctgttgtccagtttttggtaacaccttttcggtatattctgtccagttttctagttgattatagcaagaaagtaaTTTCTACAGAATTAATCCTTTATAGGCGAAGGAAGCACAGGCCTTCccagtctgtttttaatcaaatccattgagttttaaatttt-actattgtatttttatattc
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53799604 275 +  58131712 tgggctctgtttgggttccgctttcctgtgctgcagcctggaagctgcttctgggcagtgttt-ccttctctcagggatcccagctctgggctgtccgttgtccagtttttggtaacaccttttcggtatattctgtccggttttctagttgattatagcaagaaagtaaTTTCTACAGAATTAATCCTTTATAGGCGAAGGTAGCACAGGCCTTCccagtctgtttttaatcaaatccattgagttttaaatttt-actattgtatttttatattc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       415548 275 -   3636681 tgggctctgtttgggttccgctttcctgtgctgcagcctggaagctgcttctgggcagtgttt-ccttctcttagggatcccagctctgggctgtccgttgtccagtttttggtaacaccttttcggtatattctgtccggtgttctagttgattatagcaagaaagtaaTTTCTACAGAATTAATCCTTTATAGGCGAAGGAAGCACAGGCCTTCCCAGTGTGTTTTTAATCAAatccattgagttttaaatttt-actattgtatttttatattc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       394669 276 -   4457520 tgggctctgtttgggttccgctttcctgtgctgcaggctggaagctgcttctgggcagtgtttcccttctctcagggatcccagctctgggctgtctgttgtccagtttttggtaacaccttttcggtatattctgtctggttttctagttgattatagcaagaaagtaaTTTCTACAGAATTAATCCTTTATAGGCAAAGGAAGCACAGGCCTTCccagtctgtttttaatcaaatccattgagttttaaatttt-actattgtatttttatattc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55209582 276 + 190850796 tgggctctatttgggttcccctttcttgggctgcagcttggaagctgcttctgggcaatgtttcccttctctcagggatcccagctctgggctgtctgttgtccagtttttggttacagttttttggtatattctatctggttttctagttgattatagcaaggaagtaaTTTCTACAGAATCAATCCTTCATAGGCAGAGGGAGTATAGgtcttcccactctgtttttaatacaatccattgtgttttaaatttt-actagtgtatttttctgttc
i calJac3.chr3              C 0 I 314
s cebCap1.NW_016107707v1       289657 276 -   2086007 tgggctctatttgggttcccctttcctgggctgcagcttggaagctgcttctgggcagtgtttccctactctcagggatcccagctctgggctgtctgttgtccagtttttggtaacagttttttggtaaattctgtctggttttctagttgattatagcaaggaagtaaTTTCTACAGAATTAATCCTTCATAGGCAGAGGAAGTATGGGCCTTCccactctgtttttaatacaatccattgagttttaaatttt-actagtgtgtttttctgttc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       355567 276 +   3831555 tgagctctatttgggttcccctttcctgggctgcagcttggaagctgcttctgggcagtgtttcccttctctcagggatcccagctctgggctgtctgttgtccagtttttggtaacagttttttggtatattctgtctggttttctagttgattatagcaaggaagtaaTTTCTACAGAATTAATCCTTCATAGGCAGAGGAAGTATAGGCCTTCCCAGTCTGTTTTTAATACAATCCATTGAGTTTTAAAATTT-ACTAGTGTATTTTTCTGTTC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116202859 277 + 116334831 tgggctccatttgggttcccccttcctgtgctgcagcctggaagctgctgctgggcagtgtttctcttcccttggggatcatagttttggactgtctgttgtccagtgtttgaaaacagctgtttgatggattctgtctagttttctagttgattacatcagggaggTAATTTCTAAAGAATTAATCCTTCACAGACAGAGGGAGCACAGGcctttccaattggtttttaatctaattcattgagtttttgattttaactattgtatttttcagttc
i micMur3.chr9              I 3660 C 0
s proCoq1.NW_012148396v1     13430874 277 +  16154928 tgggctccatttgggttcccgcttcctgtgctgcagcctggaagctgcttctgggcagtgtttctcttccctcaggggtcgcagttctgggctgtctgttgtccagtgtttgaaaacagctgtttgatagcttctgtctagttttctagttgattacaagagggaggtaaTTTCTAAAGAATGAATCCTTTACAGACGGAGGAAGCACAGGCCTTCctaatcggtttttaatctaattcattgagtttttaattttaactattgtatttttcggttc
i proCoq1.NW_012148396v1    I 4324 C 0
e canFam3.chr3               59927385 1349 -  91889043 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e panPan2.chr15              74022192 430 -  99763055 I
e panTro5.chr15              73718605 426 -  83230942 I
e gorGor5.CYUI01000141v1        71041 417 -    281578 I
e cerAty1.NW_012001462v1       366474  61 +   4116138 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=673867.000000
s hg38.chr15_KI270851v1_alt    146055 123 +    263054 cagaatttcca-------tttTTTAAACATATCAACTTTATTGAGGTATAATTATA----TTAAACACATCCCTTTAAAATGTTTAGTTTGAAATGTTTG-ACAGTTTCTTTAACTGCCACTTTAGGTATTTTTT
s nomLeu3.chr6               70928656 125 + 121039945 cagaatttcca-------tttTTTAAAAATATCAACTTTATTGAGGTATAAATATA--AATTAAACACATCCTTTTAAAATGTTTAGTTTGAAATGCTTG-ACAGTTTCTTTAACTGTCACTTTAGGTACTTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164232302 123 - 169600520 cagaatttcca-------ttttttaaaaataccaactttattgaggtataattaca----ataaacacatccctttaaaatgtttagtttgaagtgtgtg-acaGTTTCTTTAACTGCCACTTTAGGTACTTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165552758 123 - 171882078 cagaatttcca-------ttttttaaaaataccaactttattgaggtataattaca----ataaacacatccctttaaaatgtttagtttgaagtgtgtg-acaGTTTCTTTAACTGCCACTTTAGGTACTTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       398529 123 +   2379783 cagaatttcca-------ttttttaaaaataccaactttattgaggtataattaca----ataaacacatccttttaaaatgtttagtttgaagtgtgtg-acaGTTTCTTTAACTGCCACTTTAGGTACTTTTT
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53799879 123 +  58131712 cagaatttcca-------ttttttaaaaatatcaactttattgaggtataattaca----ataaacacatccctttaaaatgtttagtttgaagtgtgtg-acaGTTTCTTTAACTGCCACTTTAGGTACTTTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       415823 123 -   3636681 cagaatttcca-------tttTTAAAAAATATCAACTTTATTGAGGTATAATTACA----ATAAACACATCCCTTTAAAATGTTTTGTTTGAAGTGTGTG-ACAGTTTCTTTAACTGCCACTTTAGGTACTTTTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       394945 123 -   4457520 cagaatttcca-------tttTTTAAAAATACCAACTTTATTGAGGCATAATTACA----GTAAACACATCCCTTTAAAATGTTTAGTTTGAAGTGTGTG-ACAGTTTCTTTAACTGCCACTTGAGGTACTTTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55210172 126 + 190850796 cagaatttccg----ttcttttttaAGAATATCAGCTTTATTGAGGTGGAATTATG----TTAAACACATCCCTTTAAAATGTTCAGTTTGAAGTATTTG-AGAGTTTCTTTAACTGCTGCTTTAGGTACTTTGT
i calJac3.chr3              I 314 C 0
s cebCap1.NW_016107707v1       289933 124 -   2086007 cagaatttcca----t--ttttttaagaatatcaactttattgaggtAGAATTATA----TTAAACATATCCCTTTAAAATGTTCAGTTTGAAGTGTTTG-ACAGTTTCTTTAACTGCCACTTTAGGTACTTGGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       355843 117 +   3831555 CAGA-----------T--ttttttaagaatatcaactttattgaggtagaattata----ttaaacacatccctttaaagtgttcagtttgaagtatttg-acaGTTTCTTTAACTGCCACTTTAGGTACTTTGT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116203136 128 + 116334831 cagaattttcatg--tttttttttaa----atcaatttttttgAGGTATACTTATATTTATTAAATACATCCGTTTTAAATGTTTAGTTTGAAGTGCTTC-ACAGTTTGTTTAACTGACACTTTAGGTAAttttt
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13431151 131 +  16154928 tagaattttcatgtttttttttttaA----ATCAACTTTATTGAGGTATTCTTATATTTATTAAATACATCCATTTAAAATATTTAGTTTGAAGTGCTTTGACAGTTTGTTTAACTGACACTTTAGGTAAttttt
i proCoq1.NW_012148396v1    C 0 I 1208
e canFam3.chr3               59927385 1349 -  91889043 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e panPan2.chr15              74022192 430 -  99763055 I
e panTro5.chr15              73718605 426 -  83230942 I
e gorGor5.CYUI01000141v1        71041 417 -    281578 I
e cerAty1.NW_012001462v1       366474  61 +   4116138 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=234688.000000
s hg38.chr15_KI270851v1_alt    146178 43 +    263054 TCTAGTTTCAACTTCTGTGTTGAAATTGTTAATGTGATCtttt
s nomLeu3.chr6               70928781 43 + 121039945 TCTAGTTTCAACTTCTGTGTTAAAATTGTTAATATGATCtttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164232425 43 - 169600520 TCTAGTTTCAACTTCTATGTTGAAATTGTTAATATGATCtttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165552881 43 - 171882078 TCTAGTTTCAACTTCTATGTTGAAATTGTTAATATGATCtttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       398652 43 +   2379783 TCTAGTTTCAACTTCTATGTTGAAATTGTTAATATGATCtttt
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53800002 43 +  58131712 TCTAGTTTCAACTTCTGTGTTGAAATTGTTAATATGATCtttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       415946 43 -   3636681 TCTAGTTTCAACTTCTGTGTTGAAATTGTTCATATGATCtttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       395068 43 -   4457520 TCTAGTTTCAACTTCTGTGTTGAAATTGTTAATATGATCtttt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55210298 43 + 190850796 TCTGGTTTTAACTTCTGTGTTGAAATTGTCAGTATGATCTTTT
i calJac3.chr3              C 0 I 2
s cebCap1.NW_016107707v1       290057 43 -   2086007 TCTGGTTTCAACTTCTGTGTTGAAATTGTCAGTATGATCTTTT
i cebCap1.NW_016107707v1    C 0 I 44
s aotNan1.NW_018503298v1       355960 43 +   3831555 TCTAGTTTCAACTTCTGTGTTGAAATTGTCAGTATGATCTTTT
i aotNan1.NW_018503298v1    C 0 I 31
s micMur3.chr9              116203264 43 + 116334831 tatagtttccatttgtttgttgaaattgtcaatatgatctttt
i micMur3.chr9              C 0 I 1670
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e panPan2.chr15              74022192 430 -  99763055 I
e panTro5.chr15              73718605 426 -  83230942 I
e gorGor5.CYUI01000141v1        71041 417 -    281578 I
e cerAty1.NW_012001462v1       366474 61 +   4116138 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=14099.000000
s hg38.chr15_KI270851v1_alt    146221 6 +    263054 tttttt
s nomLeu3.chr6               70928824 6 + 121039945 tttttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164232468 6 - 169600520 tgtttc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165552924 6 - 171882078 tgtttc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       398695 6 +   2379783 tgtttc
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53800045 6 +  58131712 tgtttc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       415989 6 -   3636681 tgtttc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       395111 6 -   4457520 tgtttc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55210343 6 + 190850796 TTTCTT
i calJac3.chr3              I 2 I 20
s aotNan1.NW_018503298v1       356034 6 +   3831555 tttatt
i aotNan1.NW_018503298v1    I 31 C 0
e micMur3.chr9              116203307 1670 + 116334831 I
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e cebCap1.NW_016107707v1       290100 44 -   2086007 I
e panPan2.chr15              74022192 430 -  99763055 I
e panTro5.chr15              73718605 426 -  83230942 I
e gorGor5.CYUI01000141v1        71041 417 -    281578 I
e cerAty1.NW_012001462v1       366474 61 +   4116138 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=-11986.000000
s hg38.chr15_KI270851v1_alt    146227 25 +    263054 -------------ttttttttttttgacaaggagt-ct-c-
s nomLeu3.chr6               70928830 20 + 121039945 -------------ttttttt-----gacagggagt-ct-c-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164232474 13 - 169600520 -------------t-----------gagatggagt-tt---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165552930 13 - 171882078 -------------t-----------gagatggagt-tt---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       398701 13 +   2379783 -------------t-----------gagatggagt-tt---
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53800051 14 +  58131712 -------------t-----------gagatggagtctt---
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       415995 13 -   3636681 -------------t-----------gagatggagt-tt---
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       395117 14 -   4457520 -------------t-----------gacatggagt-ctt--
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55210369 25 + 190850796 -ttattta-ttttt-----------gaggcagaat-tt--a
i calJac3.chr3              I 20 C 0
s cebCap1.NW_016107707v1       290144 25 -   2086007 tttattt--ttttt-----------gagacggagt-tt--c
i cebCap1.NW_016107707v1    I 44 C 0
s aotNan1.NW_018503298v1       356040 25 +   3831555 --tatttatttttt-----------gagacagagt-gt--t
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116203307 1670 + 116334831 I
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e panPan2.chr15              74022192 430 -  99763055 I
e panTro5.chr15              73718605 426 -  83230942 I
e gorGor5.CYUI01000141v1        71041 417 -    281578 I
e cerAty1.NW_012001462v1       366474 61 +   4116138 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=664255.000000
s hg38.chr15_KI270851v1_alt    146252 136 +    263054 gctc-tgtcgctcaggctgtagtgcagtgg-cacaatc-tcggctcactgcaacctccatctcctgggttcaagtga--ttctcctgcctcagcc-tcccgagtagctgggactgcaggtgcccgcca--ccacacctggctaa
s nomLeu3.chr6               70928850 136 + 121039945 gctc-tgtcactcaggctggagtgcagtgg-cacaatc-tcggctcactgcaacctccacctgctgggttcaagtga--ttctcctgcctcagcc-tcccgagtagctgggactgcagatgcccgcca--ccacacgtggctaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164232487 136 - 169600520 gctc-tgttgcccaggctggagtgcagtgg-cacaatc-tcggctcactgcagccttcacctcctgggttcaggtga--tgctcctgcctcagcc-tcccaagtagctgagactacaggtgcctgcca--tcacacccagctaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165552943 136 - 171882078 gctc-tgttgcccaggctggagtgcagtgg-cacaatc-tcggctcactgcagccttcacctcctgggttcaggtga--tgctcctgcctcagcc-tcccaagtagctgagactacaggtgcctgcca--tcacacccagctaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       398714 136 +   2379783 gctc-tgttgcccaggctggagtgcagtgg-cacaatc-tcggctcactgcagccttcacctcctgggttcaagtga--tgctcctgcctcagcc-tcccacgtagctgagactacaggtgcctgcca--tcacacccagctaa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       366535 141 +   4116138 gctc-tgttgcccaggctggagtgcaatggccacaatcttcggctcactgcg--cttcacctcctgggttcaagttgattcctcctgcctcagccgtcgccagtagctgagatgacaggtgcctgccactccacactcagctaa
i cerAty1.NW_012001462v1    I 61 C 0
s chlSab2.chr26              53800065 136 +  58131712 gctc-tgttgcccaggctggagtgcagtgg-cataatc-tcggctcactgcagccttcacctcctgggttcaagtga--ttctcctgcctcagcc-tcccaagtagctgagactacaggtgcctgcca--tcacacccagctaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       416008 136 -   3636681 gctt-tgttgcccaggctggagtgcagtgg-cacaatc-tcggctcactgcagccttcacctcctgggttcaagtga--ttctcctgcctcagcc-tcccaagtagctgagactacaggtgcctgcca--tcacacccagttaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       395131 136 -   4457520 gctc-tgttgcccaggctggagtgcagtgg-cacgatc-ttggcttactgcagccttcacctcctgggttcaagtga--ttctcctgcctcagcc-tcccaagtagctgggactacaggtgcctgcca--tcacacccagctaa
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55210394 137 + 190850796 gctcttgttacccaggctggagtgcaatgg-cacaatc-ttggctcaccacaacttccgccttctgggttcaagtag--ttgtcttgtctcagcc-tcctgagtagctaggattacaggcatgtgcca--ccatgcctggctaa
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       290169 137 -   2086007 actcatgttacccaggctggagtgcaatgg-cgcgatc-tcggcttactgcaacctccgcctcctgggttcaggcag--ttctcctgcctcagcc-tcctgagtagctgggattacaggcatgtgcca--ccatgcccagctaa
i cebCap1.NW_016107707v1    C 0 I 1
s aotNan1.NW_018503298v1       356065 137 +   3831555 gcttttgttacccaggctggagtgcaatgg-cgtaatc-ttggctcaccgcaacctccgcctcctgggttcaggcaa--ttctcctgcctcagcc-tcctgagtagctgggattacaggcacgcgcca--ccatgcccagctaa
i aotNan1.NW_018503298v1    C 0 I 1
e micMur3.chr9              116203307 1670 + 116334831 I
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e panPan2.chr15              74022192 430 -  99763055 I
e panTro5.chr15              73718605 426 -  83230942 I
e gorGor5.CYUI01000141v1        71041 417 -    281578 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=757995.000000
s hg38.chr15_KI270851v1_alt    146388 91 +    263054 tttttgtatttttaatagagatgggggttcaccagattggccaggctggtcttgaactcgtgacctc--gtgatccgcctgccttggcctccc
s panTro5.chr15              73719031 91 -  83230942 tttttatatttttagtagagatggggtttcaccatgttgcccaggctggtcttgaactcctgagctc--gtgatccacctgccttggcctccc
i panTro5.chr15             I 426 C 0
s panPan2.chr15              74022622 91 -  99763055 tttttatatttttagtagagatggggtttcaccatgttgcccaggctggtcttgaactcctgagctc--gtgatccacctgccttggcctccc
i panPan2.chr15             I 430 C 0
s gorGor5.CYUI01000141v1        71458 91 -    281578 tttttatatttttagtagagatggggtttcaccatgttgcccaggctggtcttgaactcctgagctc--gtgattcacctgccttggcctccc
i gorGor5.CYUI01000141v1    I 417 C 0
s nomLeu3.chr6               70928986 91 + 121039945 tttttgtatttttagtagagatggggtttcaccagattggccaggctggtcttgaactcctgacctc--gtgatccacctgcctcggcctccc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164232623 91 - 169600520 tttttgcatttttagtagagatggggtttcaccagattggccaggctggtcttgaactcctgacctc--gtgatccgcctgcctcggcctccc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165553079 91 - 171882078 tttttgcatttttagtagagatggggtttcaccagattggccaggctggtcttgaactcctgacctc--gtgatccgcctgcctcggcctccc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       398850 91 +   2379783 tttttgcatttttagtagagatggggtttcaccagattggccaggctggtcttgaactcctgacctc--gtgatccgcctgcctcggcctccc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       366676 91 +   4116138 ttttttggtatttagtagggatggggtttcaccagattggccaggctggtcttgaactcctgacctc--gtgatccgcctgcctcgcgtcccc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53800201 91 +  58131712 tttttgtatttttagtagagatggggtttcaccagattggccaggctggtcttgaactcctgacctc--gtgatccgcctgcctcggcctccc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       416144 91 -   3636681 tttttgtatttttagtagagatggggtttcaccagattggccaggctggtcttgaactcctgacctc--gtgatccgcctgcctcggcctccc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       395267 91 -   4457520 tttttgtatttttagtagagatggggtttcaccagattggccaggctggtcttgaactcctgacctc--atgatctgcctgcctcggcctccc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55210531 92 + 190850796 -ttttgtgtgtttaatggagacagggtttctccatgttggtcaggctggtctcaaactctcgacctcaggtgatctgctggccttggcctcct
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       290307 91 -   2086007 tttttgtatttttagtagagacggggtttcaccatgttgaccaggatggtctcgatctcttgacctc--gtgatccacccgcctcggcctccc
i cebCap1.NW_016107707v1    I 1 I 297
s aotNan1.NW_018503298v1       356203 91 +   3831555 tttttgtatttttagtagagacggggtttcaccatgttgaccaggatggtctcgatctcttgacctc--gtgatctacccgcctcggcctccc
i aotNan1.NW_018503298v1    I 1 C 0
e micMur3.chr9              116203307 1670 + 116334831 I
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=244680.000000
s hg38.chr15_KI270851v1_alt    146479 36 +    263054 aaagtgctgggattacaagcatga---accgtgcccg--gc
s panTro5.chr15              73719122 36 -  83230942 aaagtgctaggagtacaagcatga---accgtgcctg--gc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74022713 36 -  99763055 aaagtgctgggagtacaagcatga---accgtgcctg--gc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        71549 36 -    281578 aaagtgctgggattacaagcatga---accgtgcccg--gc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70929077 36 + 121039945 aaagtgctggaattacaagcgtga---accgtgccca--gc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164232714 36 - 169600520 aaactgctgtgattacaggcatga---accgtgcccg--gc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165553170 36 - 171882078 aaactgctgtgattacaggcatga---accgtgcccg--gc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       398941 36 +   2379783 aaactgctgtgattacaggcgtga---accgtgtccg--gc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       366767 35 +   4116138 aaactgc-gtgattacaggcgtga---actgtgcccg--gc
i cerAty1.NW_012001462v1    C 0 I 1
s chlSab2.chr26              53800292 36 +  58131712 aaactgctgtgattataggcgtga---accgtgcccg--gc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       416235 36 -   3636681 aaactgctgtgattacaggcgtga---accgtgcccg--gc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       395358 36 -   4457520 aaactgctgtgattacaggcgtga---accgtgcccg--gc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55210623 37 + 190850796 aaagtgctgggattacaggtgtgagccactgcgcccg----
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       290695 37 -   2086007 aaagtgctgggattacaggcatgagccaccgcgcccg----
i cebCap1.NW_016107707v1    I 297 C 0
s aotNan1.NW_018503298v1       356294 39 +   3831555 aaagtgctgggattacaggcgtgagccaccgtgcccggc--
i aotNan1.NW_018503298v1    C 0 I 298
e micMur3.chr9              116203307 1670 + 116334831 I
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=151699.000000
s hg38.chr15_KI270851v1_alt    146515 34 +    263054 TGTTAATAGGATCTTTTAATTGCTTGACTCTATT
s panTro5.chr15              73719158 34 -  83230942 TGTTAATAGGATCTTTTAATTGCTTGACCCTATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74022749 34 -  99763055 TGTTAATAGGATCTTTTAATTGCTTGACCCTATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        71585 34 -    281578 TGTTAATAGGATCTTTTAATTGCTTGACCCTATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70929113 34 + 121039945 TGTTAATAGGATATTTTAATTGCTTGACTATATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164232750 34 - 169600520 TGTTAATAGGATCTTTTAATTGCTTGACCGTATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165553206 34 - 171882078 TGTTAATAGGATCTTTTAATTGCTTGACCGTATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       398977 34 +   2379783 TGTTAATAGGATCTTTTAATTGCTTGACCGTATT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       366803 33 +   4116138 CGTTAATAGGG-ATTTTAATTGCTTGACCGTATT
i cerAty1.NW_012001462v1    I 1 C 0
s chlSab2.chr26              53800328 34 +  58131712 TGTTAATAGGATCTTTTAATTGCCTGACCGTATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       416271 34 -   3636681 TGTTAATACGATTTTTTAATTGCTTGACCGTATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       395394 34 -   4457520 TGTTAATAGGATCTTTTAATTGCTTGACCGTATT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55210660  2 + 190850796 -----------TC---------------------
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       290732  2 -   2086007 -----------TC---------------------
i cebCap1.NW_016107707v1    C 0 C 0
e micMur3.chr9              116203307 1670 + 116334831 I
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       356333 298 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=6460739.000000
s hg38.chr15_KI270851v1_alt    146549 868 +    263054 AAAGGTAGTTATTTTAAAAGTGTGTTTataaaccttgtccgaccccatagattcct-tag-ccgcctctctctgtccctcttggctga---ctcatgcctgtgagccgcccttcggctccagtctccgctgtgatgtcacgcaagagagttggagtatggcttcctgactgcctaccaaggagccagtgacacagcctggaaggtgtggcgagtgtgtgtgggtgtgaattccttgtggtatgaacgttcaccactttacaaggagagatgagggaactca-gtgtttttattcctccc-ttttttctttcctctttggactattttat------ggtgtagtttc-ttcttgcaaaccttctggaaaagccacatatgcctagtgaatgtgct---ggctgaacagttggttgtatttgcagctcattgagaagaggtggcACTAACATaggggtcagcaca-ttttttctgtaaagcaccagatagtaaatgtttat-----gtgggccgtacg-tgctcttttagaacagctcaccttggccattgtcctgcgaga--ag-ctgccaaacatgt-gtatggctatattccagg-aaaacttcgtggataccagaatttgaatgtcatataattttcatttgttgacatatga--ttttttttttttttttttc--tgagagggag-tcttgc-tctgttgcccaggctggagtgcag-tggcgcgatcttggctcactgcaacctccacctcctgg-------------gtttaagcaattgttctgcctcagactctggagtagctgggattacaggcgtgtaccatcatgcctcactaa--------ttt--ttttttt-t---gtatttttagtagagatggggttt-catcatgttggccaggctggtcgtgaactccttacctc
s panTro5.chr15              73719192 859 -  83230942 AAAGGTAGTTATTTTAAAAGTGTGTTTATaaac-ttgtccgaccccatagattcct-tag-ccgcctctctctgtccctcttggttga---ctcatacctgtgagccgcccttcagctccagtgtccgctgtgatgtcacgcaagagagttggagtatggcttcctgactgcctaccaaggagccagtgacacagcctggaaggtgtggcgagtgtg----ggtgtgaattccctgtggtatgaacgttcaccactttacaaggagagatgagggaactca-gtgtttttattcctccc-ttttttctttcctccttggactattttat------ggtgtagtttc-ttcttgcaaaccttctggaaaagccacatatgcctagtgaatgtgct---ggctgaacagttggttgtatttgcagctcattgagaagaggtggcACTAACATaggggtcaacaca-ttttttctgtaaagcaccagatagtaaatgtttat-----gtgggccgtacg-tgctcttttagaacaactcaccttggccattgtcctgcgaga--ag-ctgccaaacatgt-gtatggctatattccagg-aaaactttgtggataccagaatttgaatgtcatataattttcatttgttgacatatg-----ttttttttttttttttc--tgagagggag-tcttgc-tctgttgcccaggctggagtgcag-tggcgcgatcttggctcactgcaacctccacctcctgg-------------gtttaagcaattctcctgcctcagactccggagtagctgggattacaggcgtgtaccatcatgcctggctaa--------ttt--ttttttt-----gtatttttagtagagacggggttt-catcatgttggccaggctggtcttgaactcctgacctc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74022783 861 -  99763055 AAAGGTAGTTATTTTAAAAGTGTGTTTataaaccttgtccgaccccatagattcct-tag-ccgcctctctctgtccctcttggttga---ctcatacctgtgagccgcccttcagctccagtgtccgctgtgatgtcacgcaagagagttggagtatggcttcctgactgcctaccaaggagccagtgacacagcctggaaggtgtggcgagtgtg----ggtgtgaattccctgtggtatgaacgttcaccactttacaaggagagatgagggaactca-gtgtttttattcctccc-ttttttctttcctccttggactattttat------ggtgtagtttc-ttcttgcaaaccttctggaaaagccacatatgcctagtgaatgtgct---ggctgaacagttggttgtatttgcagctcattgagaagaggtggcACTAACATaggggtcaacaca-ttttttctgtaaagcaccagatagtaaatgtttat-----gtgggccgtacg-tgctcttttagaacaactcaccttggccattgtcctgcgaga--ag-ctgccaaacatgt-gtatggctatattccagg-aaaactttgtggataccagaatttgaatgtcatataattttcatttgttgacatattg----ttttttttttttttttc--tgagagggag-tcttgc-tctgttgcccaggctggagtgcag-tggcgcgatcttggctcactgcaacctccacctcctgg-------------gtttaagcaattctcctgcctcagactccggagtagctgggattacaggcgtgtaccatcatgcctggctaa--------ttt--ttttttt-----gtatttttagtagagacggggttt-catcatgttggccaggctggtcttgaactcctgacctc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        71619 844 -    281578 AAAGGTAGTTATTTTAAAAGTGTGTTTataaaccttgtccgaccccatagattcct-tag-ccgcctctctctgtccctcttggttga---ctcatgcctgtgagccgccctttggctccagtctccgctgtgatgtcacgcaagagagttggagtatggcttcctgactgcctaccaaggagccagtgacacagcctggaaggtgtg-------------ggtgtgaattccctgtggtatgaacgttcaccactttacaaggagagatgagggaactga-gtgtttttattcctccc-ttttttctttcttccttggactattttatagtccaagtgtagtttc-ttcttgcaaaccttctggaaaagccacatatgcctagtgaatgtgct---ggctgaacaattggttgtatttgcagctcattgagaagaggtggcggtaacataggagtcagcaca-ttttttctataaagcaccagatagtaaatgtttat-----gtgggccgtacg-tgctcttttataacaactcaccttggccattgtcctgcgaga--ag-ctgccaAAC--GT-GTATGGCTATATTCCAGG-Aa-----------------aatttgaatgtcagataattttcatgtgttgacatatgttttttttttttttttttttcc--tgagagggag-tcttgc-tctgttgcccaggctggagtgcag-tggcgcaatcttggctcactgcaacctccacctcctgg-------------gtttaagcaattctcctgcctcagactccggagtagctgggattacaggtgtgtaccatcatgcctggctaa--------ttt--ttttttt-t---gtatttttagtagagatggggttt-caccatgttggccaggctggtcttgaactcctgacctc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70929147 864 + 121039945 AAAGGTAGTTATTTTAAAAGTGTGTTTataaaccttgtccgaccccatagattcct-tag-ccgcctctctgtgtccctcttggttga---ctcatgcctgtgagctgccctttggctccagtctccgctgtgatgtcacacaagagagtcggagtatggcttcctgactgcctaccaaggagccagtgacacagcctggaaggtgtggcgagtgtg----ggtgtgaattccctgtggtatgaacgttcaccactttacaaggagagatgagggaactcg-atgtttttattcctccctttttttctttcctccttggactattttat------ggtatagtttc-ttcttgcaaaccttctggaaaagccacatatgcctaatgaatgtgct---ggctgaacaattggttgtatttgcagctcattgagaagaggtggcACTAACATaggggtcagcaca-ttttttctgtaaagcaccagatagtaaatgtttat-----gtgggccgtacg-tgctcttttataacaactcaccttggccattgtcctgtgagagcag-ccgccaaac--gt-gtgtggctatattccagg-aaaact--gtggataccagaatttgaatgtcatataattttcatgtgttgacatatga--ttttttttttttttttttc--tgagagggag-tcttgc-tctgttgcccaggctggagtgcag-tggcacgatcttggctcactgcaacctccacctcctgg-------------gtttaagcaattctcctgcctcagactccggagtagctgggattacaggcaagtaccaccatacctggctaa--------ttt--ttttttttt---gtgtttttagtaaagacggggttt-caccatgttggccaggctgatcttgaactcctgacctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164232784 868 - 169600520 AAAGGTAGTTCTTTTAAAAGtgtatttataaaccttgtccaaccccatagattcct-tag-ctacctctctgtgtccctcttggttta---ctcatgcctgtgggctgcccttcggctccaatctccgctatgatgtcacacaagacagttggattatggcttcctgactgcctaccaaggagccagtga--cagcctggagggtgcggtgagtgtg----ggtgtgaattccccgaggtgtgaacgttcaccactttacaaggagagaggagggaactca-atggtttcattcctccc--tttttctttcctccttggactattttat------ggtgtagtttc-ttcttgcaaaccttctggaaaagccacataggcctagtgaatgtgct---gactgaacaattggttgtatttgcagctcactgagaagaggtggcACTAACATaagggtcagcaca-ttttttccataaagcaccagatggtaaatgtttac-----gtgggctgtacg-tgctcttttacaacaactcaccttggccactgtcatgcgagagcag-ccaccaaacgtgt-gtggggcaatattccagg-aaaacttggtagatatcagaatttgaatgtcatataattttcatgtgttgacatatga----ttttttcttttttttcc--tgagagggag-tcttcc-tctgttgcccaggctggagtgcag-tggtgcgatcttggctcactgcaacctccacctcccag-------------gtttaagcagttctcctgcctcagactctggagtagctgggattacaggcatgcaccaccatgcctggctaa----ttttttt--ttttttt-tttggtatttttagtagagacggggttt-ccccatgttggcccggctggtcttgaactcctgacctc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165553240 865 - 171882078 AAAGGTAGTTCTTTTAAAAGtgtatttataaaccttgtccaaccccatagattcct-tag-ctacctctctgtgtccctcttggttta---ctcatgcctgtgggctgcccttcggctccaatctccgctatgatgtcacacaagacagttggattatggcttcctgactgcctaccaaggagccagtga--cagcctggagggtgcggtgagtgtg----ggtgtgaattccccgaggtgtgaacgttcactactttacaaggagagaggagggaactca-atggtttcattcctccc--tttttctttcctccttggactattttat------ggtgtagtttc-ttcttgcaaaccttctggaaaagccacataggcctagtgaatgtgct---gactgaacaattggttgtatttgcagctcactgagaagaggtggcACTAACATaagggtcagcaca-ttttttccataaagcaccagatggtaaatgtttac-----gtgggctgtacg-tgctcttttacaacaactcaccttggccactgtcatgcgagagcag-ccaccaaacgtgt-gtggggcaatattccagg-aaaacttggtagatatcagaatttgaatgtcatataattttcatgtgttgacatatga----ttttttcttttttttcc--tgagagggag-tcttcc-tctgttgcccaggctggagtgcag-tggtgcgatcttggctcactgcaacctccacctcccag-------------gtttaagcagttctcctgcctcagactctggagtagctgggattacaggcatgcaccaccatgcctggctaa-------tttt--ttttttt-tttggtatttttagtagagacggggttt-ccccatgttggcccggctggtcttgaactcctgacctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       399011 865 +   2379783 AAAGGTAGTTCTTTTAAAAGtgtatttataaaccttgtctgaccccatagattcct-tag-ctacctctctgtgtccctcttggttga---ctcatgcctgtgggctgcccttcggctccaatctccgctatgatgtcacacaagacagttggattatggcttcctgactgcctaccaaggagccagtga--cagcctggagggtgcggtgagtgtg----ggtgtgaattccccgaggtgtgaatgttcaccactttacaaggagagaggagggaactca-atggtttcattcctccc--tttttctttcctccttagactattttat------ggtgtagtttc-ttcttgcaaaccttctggaaaagccacataggcctagtgaatgtgct---gactgaacaattggttgtatttgcagctcactgagaagaggtggcACTAACATaagggtcagcaca-ttttttccataaagcaccagatggtaaatgtttac-----gtgggctgtacg-tgctcttttacaacaactcaccttggccactgtcatgcgagagcag-ccaccaaacgtgt-gtggggcaatattccagg-aaaacttggtagatatcagaatttgaatgtcatataattttcatgtgttgacatatga----ttttttcttttttttcc--tgagagggag-tcttcc-tctgttgcccaggctggagtgcag-tggtgtgatcttggctcactgcaacctccacctcccag-------------gtttaagcagttctcctgcctcagactctggagtagctgggattacaggcatgcaccaccatgcctggctaa-------tttt--ttttttt-tttggtatttttagtagagacggggttt-ccccatgttggcccggctggtcttgaactcctgacttc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       366836 855 +   4116138 AAAGGTAGTTCTTT--AAAGtgta-ttgtataacctgtcga--cccatagattcctgtagcctactactctgtgtccctcttggtttgactcccatgcctgt-ggctgcccttcgg--tcaatct-ggctatgatgtcacataagagagttgggatatgtc-ccctgactgcctaccaaggagccagtggaccagct--gagggtgcggtgagtg-g----ggtgtgaatt-cacgtggtgtgaac-ttcagactcttacaaggagggaggaggaaactcagatggtttcattcccccc--tttttctttcctctttggacttatttat------ggtgtagtttctttcttgcaa---ttctgtgaaaaatacata-gcctagtgaatgtgcctgAAACCTGAAAATTGGTTGTTATTTCAGCTCACTGAGAAGAGGTGG-ATAAACGTAAGGGTCCAGACA-TTTTTTCCATAAAGCA-CAGAT-GTAAATGCTTAATGGTGGGgggctgtacgctgctcttttacaacaactcacctttgccactgtcatgcgagagcagaccaccaaacgtgtggtggggcaatattccagg-aaaactttgtagatatcagaatttgaatgtcatataattttcatgatttgacatatga----ttttttc-tttttttcc--tgagagggagttcttgc-tctgttgcccaggctggagtgcagttggtgcgatcttgg--cactgc--cctccacct-ccag-------------gtttaaacagttctcctgcctccgactctggagtagct-ggattaca-gcatgcaccaccatgcctggctaa-------tttt--ttttttt-t---gtatttttagtagagacggggtttcccccatgttggcctggctggtcttgaactcctgacctc
i cerAty1.NW_012001462v1    C 0 I 1707
s chlSab2.chr26              53800362 870 +  58131712 AAAGGTAGTTCTTTTAAAAGtgtatttataaaccttgtccgaccccatagattcct-tag-ctacctctctgtgtccctcttggttga---ctcatgcctgtgggctgcccttcggctccagtctccgctatgatgtcacac--gagagttggattgtggcttcctgactgcctaccaaggagccagtga--cagcctggagggtgcggtgagtgtg----ggtgcgaattccccgtggtgtgaacgttcaccacttgacaaggagagaggagggaactca-atgatttcattcctccc--tttttctttcctccttggactattttat------ggtgtagtttc-ttcttgcaaaccttctggaaaagccacataggcctagtgaatgtgct---gactgaacaattggttgtatttgcagctcactgagaagaggtggcACTAACATaggggtcagcaca-ttttttccataaagcaccagatggtaaatgtttat-----gtgggctgtacg-tgctcttttacaacaactcaccttggccactgtcacgcgagagcag-ccaccaaacgtgt-gtggggcaatattccagg-aaaactttgtggatatcagaatttgaatgtcatataattttcatgtgttgacatatga----ttttttcttttttttcc--tgagagggag-tcttgc-tctgttgcccaggctggagtgcag-tggtgcgatcttggctcactgcaacctccacctcccag-------------gtttaagcagttctcctgcctcagactctggagtagctgggattacaggcatgcagcaccatgcctggctaattttttttttt--ttttttt-tttggtatttttagtagagacggggttt-ccccatgttggcccagctggtcttgaactcctgacctc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       416305 864 -   3636681 AAAGGTAGTTCTTTTAAAAGtgtatttataaaccttgtccgaccccatagattcct-tag-ctacctctctgtgtccctcttggttga---ctcatgcctgtgggctgcccttcggctccaacctccgctatgatgtcacacaagagagttggattatggcttcctgactgcctaccaaggagccagtga--cagcctggagggtgcggtgagtgtg----ggtgtgaattccccgtggtgtgaacgttcaccactttacaaggagagaggagggaactca-atggtttcattcctccc--tttttctttcctccttggactattttat------ggtgtagtttc-ttcttgcaaaccttctggaaaagccacataggcctagtgaatgtgct---gactgaacaattggttgtatttgcagctcactgagaagaggtggcACTAACATaagggtcagcaca-ttttttccataaagcaccagatggtaaatgtttac-----gtgggctgtacg-tgctcttttacaacaactcaccttggccactgtcacgcgagagcag-ccaccaaacgtgt-gtggggcaatattccagg-aaaactttgtagatatcagaatttgaatgtcatataattttcatgtgttgacatatga----ttttttcttttttttcc--tgagagggag-tcttgc-tctgttgcccaggctggagtgcag-tggtgcgatcttggctcactgcaacctccaccttccag-------------gtttaagcagttctcctgcctcagactctggagtagctgggattacaggcatgcaccaccatgcctggctaa--------ttt--ttttttt-tttggtgtttttagtagggacgggattt-ccccatgttggcccggctggtcttgaactcctgacctc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       395428 867 -   4457520 AAAGGTAGTTCTTTTAAAAGtgtatttgtaaacctcgtccgaccccatagattcct-tag-ctgcctctctgtgtccctcttggttga---ctcatgcctgtgggctgcccttcgactccaatccccgctgtgatgtcacacaagagagttggattatggcttcctgactgcctaccaaggagccagtgacacagcctggagggtgcggtgagtgtg----ggtgtgaactccctgtggtgtgaacgttcaccactttacaaggagagaggagggagctca-gtggtttcattcctccc--ttttcgtttcctccttggactattttat------ggtgtcgtttc-ttcttgcaaaccttctggaaaagccacataggcctagtgaatgtgct---gactgaacaattggttgtatttgtagctcattgagaagaggtggcACTAACATaggggtcagcaca-ttttttccataaagcaccagatagtaaatgtttac-----gtgggctgtatg-tgctcttttacaacaactcaccttggccactgtcatgtgagagcag-ccaccaaacgtgt-gtgtggcaatattttaggaaaaactttgcggatattagaatttgaatgttgtataattttcatgtgttgacatatga----ttttttcttttttttcc--tgagagggag-tcttgc-tctgttgcccaggctggagtgcag-tggtgtgatcttggctcactgcaacctccacctcccag-------------gtttaagcaattctcctgcctcagactctggagtagctgggattacaggcatgcatcaccctgcccggctaa--------ttt--ttttttt-ttttgtatttttagtagagatgggattt-ccccatgttggcccggctggtcttgaactcctgacctc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55210662 830 + 190850796 AAAGGTAGTTATTATGAAAGTGTGTTTacaaaccttgtctgaccccatggattcct-taa-ctgcatctctctgtccctcttggttga---ctcatacatacgggctgctct---------------gctgtgatgtcacgcaacagagctgga-tatggcttcctg-------accaaggagccagtgtcacagcccggaat-aggggctagcgtg----ggtgtt-attccccgtggtatgaacattcaccactttacaaggagaggtgagggaagtga-gtgttttaattcctccc-ccttttttttcctccttggactactttgt------ggtgtggtttc-ttcttgcaaaccttctggaagtgccacatatgcctagtgaatgtgct---ggctgaacaattggttgtatttgcagctcattgagaagaggtggcACTAACATaggggtcagcacatttttttctg----------gatagtaaatgtttat-----gtgggcccaacg-tgctcttctgtaactactcaccctggcc---gttatctgagaggag-ccaccaaatgaga-gtgtgactatattccagg-aaaactt-gtggataccaaaatttgaatgtcatgtaattttcatgtgttggcatatt-----tttt----ttttttttt--tgagatggag-tttcgctcttgttacccaggctggagtacaa-tggtgcgatttcggctcactgcaagctccgcttcctggcggtgagccgagaattcagccaattctcctgcctcagcctccagagtagctgggattacaggcacgtgccaccatgcccagctaa--------ttt------ttt-----gtatttttagtagagacggagttt-caccgtgttgaccaggatggtctcgatcccttgacctc
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       290734 823 -   2086007 AAAGGTAGTTATTATAAAAGTGTGTTTACAAACCTTGCCTGACCCCTTAGATTCCT-TAA-CTGCATATCTCTGTCCCTCTTGGTTGA---CTCATacctgtgg-----------------------gctgtgatgtcacacagcagagctggattatggcttcctg-------accaaggagccaatgtcacagcctggaatggggggcgagcgtg----ggtgttaattccccgtagtatgaacgttcaccacttcgcaagaagaggtgagggaagtga-gtgttttaattcctccc-cc-cttttttcctccttggactactttgt------ggtgtggtttc-ttcttgcaaactttctggaaacgccgtatatgcctagc-aatgtgct---gaccgaacaattgtttgtatttgcaactcattgagaagaggtggcACTAACATaggggtcagcacatttttttctgtaaagcaccagatagtaaatgtttat-----gtgggccgtacg-tgctcttttataactgctcaccctggcc---gttatgtgagaggag-ccaccaaacgagt-gtgtgactatattccagg-aaaactt-gtggataccaaaatttgaatatcatataattttcatgtgttggcatgtga----tttt----ttttttccc--tgagaggcag-tcttgc-cctgttgcccaggctcaagtgcag-tgatgtgatcttagctcactgcagcctctgcctcgtgg-------------gtttaagcaatt---ctgcctcagcctctggagtagctgcaattgcaagcacacaccaccatgcccggctaa--------ttttgtgtgtgt-----gtgtttttagcagagacagggttt-cactatgttggccaggcagatctggaactcctaacctc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       356631 832 +   3831555 AAAGGTAGTTATTATAAAAGTGTGTTTacaaaccttgtctgaccccatagatacct-taa-ctgcatctctctgtccctcttggttga---gtcatacctgtgggctgctct---------------gctgtgatgtcacacaacagagctggattacggcttcctg-------accaagggtcccgtgtcacagcctggaatggggggcaagcgtg----ggtgttaattccccgtagtatgaacgttcaccacttcacaaggagaggtgagagaaatta-gtgttttaattctttcc-ccttttttttcctccttggactactttgt------ggtgtggtttc-ttcttgcaaaccttctggaaacgccacatatgcctagcgaatgtgct---ggctgaacaattggttgtatttgcagctcattgagaagaggtggcACTAACATaggggtcagcacatttttttctgtaaagcaccagatagtaaatgtttat-----gtgggccctacg-tgctctt-tataactactcaccctggcc---gttatgtgagaggag-ccaccaaatgagt-gtgtgactatattccagg-aaaactt-gtggataccaaaatttgaatgtcatataattttcatgtgttggcatatga----tttt----tttttttcccatgagaggtag-tcttgc-tctgtagcccaggctcgagagcag-tggtgtgatcttagctcactgcggcctctgcctcctgg-------------gtttaagcaatt---ctgcctcagcctctggagtagctgcaattgcaagcgcataccaccatgcccggctaa--------ttt--tttgtgt-----gtgtttttagtagagacagggttt-cactatgttggccacgcaggtctggaactcctaacctc
i aotNan1.NW_018503298v1    I 298 C 0
e micMur3.chr9              116203307 1670 + 116334831 I
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=82891.000000
s hg38.chr15_KI270851v1_alt    147417 19 +    263054 gtgat--------------ccgcctgccttggc
s panTro5.chr15              73720051 19 -  83230942 atgat--------------ccacccgccttggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74023644 19 -  99763055 atgat--------------ccacccaccttggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        72463 19 -    281578 ctgat--------------ccgcccgccttggc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70930011 19 + 121039945 atgat--------------ccgcccgccttggc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164233652 32 - 169600520 atgat-ccaccccccccccgcccccgccttggc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165554105 30 - 171882078 atgat---ccaccccccccgcccccgccttggc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       399876 33 +   2379783 atgatccccccccccccccgcccccgccttggc
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53801232 33 +  58131712 atgatccacccccccccccgcccccgccttggc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       417169 29 -   3636681 acgatcca----cccccccgcccccgccttggc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       396295 30 -   4457520 atgat---ccacacccctgccccccgccttggc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55211492 19 + 190850796 ctgat--------------ccacccgcctcagc
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       291557 19 -   2086007 atgat--------------ctgcctgcttcggc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       357463 19 +   3831555 atgat--------------ctgcctgctttggc
i aotNan1.NW_018503298v1    C 0 I 421
e micMur3.chr9              116203307 1670 + 116334831 I
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e cerAty1.NW_012001462v1       367691 1707 +   4116138 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=250970.000000
s hg38.chr15_KI270851v1_alt    147436 44 +    263054 ct-cccaaagt-ctgagatgacaggtgtgagccaccgtgcttggct
s panTro5.chr15              73720070 44 -  83230942 ct-cccaaagt-ctgagattacaggtgtgagccaccgtgcttggct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74023663 44 -  99763055 ct-cccaaagt-ctgagattacaggtgtgagccaccgtgcttggct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        72482 44 -    281578 ct-cccaaagt-ctgagattacaggtgtgagccaccgcgcttggct
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70930030 44 + 121039945 ct-cccaaagt-ctgagattacaggtgtgagccaccgtgcttggct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164233684 45 - 169600520 ctccccaaagt-ctgggattacaggtgtgagccaccgcacttggtt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165554135 44 - 171882078 ct-cccaaagt-ctgggattacaggtgtgagccaccgcacttggtt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       399909 44 +   2379783 ct-cccaaagt-ctgggattacaggtgtgagccaccgcacttggtt
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53801265 44 +  58131712 ct-cccaaagt-ctgggattacaggtgtgagccaccgcacttggtt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       417198 44 -   3636681 ct-cccaaagt-ctgggattacaggtgtgagccaccgcacttggtt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       396325 44 -   4457520 ct-cccaaagt-ctgggattataggtgtgagccaccgcacttggtt
i colAng1.NW_012115278v1    C 0 I 305
s calJac3.chr3               55211511 45 + 190850796 ct-cccaaagtgctgggattacaggcttgagccaccgcgaccggct
i calJac3.chr3              C 0 I 1
s cebCap1.NW_016107707v1       291576 38 -   2086007 gt-cctaatgtgctgggattataggcacgagccattgtg-------
i cebCap1.NW_016107707v1    C 0 C 0
e micMur3.chr9              116203307 1670 + 116334831 I
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       357482 421 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e cerAty1.NW_012001462v1       367691 1707 +   4116138 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=54879.000000
s hg38.chr15_KI270851v1_alt    147480 10 +    263054 gacatatgat
s panTro5.chr15              73720114 10 -  83230942 gacatatgat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74023707 10 -  99763055 gacatatgat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        72526 10 -    281578 gacatatgat
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70930074 10 + 121039945 gacatacgat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164233729 10 - 169600520 gacatatgat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165554179 10 - 171882078 gacatatgat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       399953 10 +   2379783 gacatatgat
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53801309 10 +  58131712 gacatacgat
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       417242 10 -   3636681 gacatatgat
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       396674 10 -   4457520 gacatatgat
i colAng1.NW_012115278v1    I 305 C 0
s calJac3.chr3               55211557 10 + 190850796 ggcttacgat
i calJac3.chr3              I 1 I 289
e micMur3.chr9              116203307 1670 + 116334831 I
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       357482 421 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e cebCap1.NW_016107707v1       291614  0 -   2086007 C
e cerAty1.NW_012001462v1       367691 1707 +   4116138 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=136658.000000
s hg38.chr15_KI270851v1_alt    147490 21 +    263054 tcttttgattatgttgcaacc
s panTro5.chr15              73720124 21 -  83230942 tcttttgattatgttgcaacc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74023717 21 -  99763055 tcttttgattatgttacaacc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        72536 21 -    281578 tcttttgattatgttgcaacc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70930084 21 + 121039945 tcttttgattatgtttcaacc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164233739 21 - 169600520 tcttttgattatttttcaacc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165554189 21 - 171882078 tcttttgattatttttcaacc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       399963 21 +   2379783 tcttttgattatttttcaacc
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53801319 21 +  58131712 tcttttgattatttttcaacc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       417252 21 -   3636681 tcttttgattatttttcaacc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       396684 21 -   4457520 tcttttgattatttttcaacc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55211856 21 + 190850796 tcttttgattatttttcaacc
i calJac3.chr3              I 289 C 0
s cebCap1.NW_016107707v1       291614 21 -   2086007 tcttttgattatttttcaacc
i cebCap1.NW_016107707v1    C 0 C 0
e micMur3.chr9              116203307 1670 + 116334831 I
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       357482 421 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e cerAty1.NW_012001462v1       367691 1707 +   4116138 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=545647.000000
s hg38.chr15_KI270851v1_alt    147511 84 +    263054 attgaaaaatataaaatcactcttTTTTAATATATATTTTTC-Tttttttaggaaattaaaggaaataagaatggctcctacata
s panTro5.chr15              73720145 82 -  83230942 attgaaaaatataaaatcact--ttttaAATATATATTTTTC-Tttttttaggaaattaaaggaaataagaatggctcctacata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74023738 82 -  99763055 attgaaaaatataaaatcact--ttttaAATATATATTTTTC-Tttttttaggaaattaaaggaaataagaatggctcctacata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        72557 82 -    281578 attgaaaaatataaaatcact--tttTTAATATATATTTTTC-Tttttttaggaaattaaaggaaataagaatggctcctacata
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70930105 84 + 121039945 attgaaaaagataaaatcactcttTTTTAATATATATTTTTC-Tttttttaggaaattaaaggaaataagaatggctcctacata
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164233760 84 - 169600520 attgaaaaatagaaaatcactcttTTTTAATATATATTTTTC-Tttttttaggaaattaaaggaagtaagaatggctcctacata
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165554210 84 - 171882078 attgaaaaatagaaaatcactcttTTTTAATATATATTTTTC-Tttttttaggaaattaaaggaagtaagaatggctcctacata
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       399984 84 +   2379783 attgaaaaatagaaaatcactcttTTTTAATATGTATTTTTC-Tttttttaggaaattaaaggaagtaagaatggctcctacata
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       369398 84 +   4116138 ATTGAAAAATAGAAAATCACTCTTTTTTAATATATATTTTTC-Tttttttaggaaattaaaggaagtaagaatggctcctacata
i cerAty1.NW_012001462v1    I 1707 C 0
s chlSab2.chr26              53801340 84 +  58131712 attgaaaaatagaaaatcactcttTTTTAATATATATTTTTC-Tttttttaggaaattaaaggaaataagaatggctcctacata
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       417273 84 -   3636681 attgaaaaatagaaaatcactcttTTTTAATATATATTTTTC-Tttttttaggaaattaaaggaagtaagaatggctcctacata
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       396705 84 -   4457520 gttgaaaaatagaaaatcactcttTTTTAATATATGTTTTTC-Tttttttaggaaattaaaggaaataagaatggctcttacata
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55211877 63 + 190850796 attgaaaaatataaaatcactcttTTAAAATATCTATTTTTCTTTTTTTTAGGAAGCGAAATG----------------------
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       291635 63 -   2086007 attgaaaaatataaaatcactcttTTAAAATATATGTTTTTCTTTTTTTTAGGAAATGAAATG----------------------
i cebCap1.NW_016107707v1    C 0 C 0
e micMur3.chr9              116203307 1670 + 116334831 I
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e aotNan1.NW_018503298v1       357482 421 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=1914508.000000
s hg38.chr15_KI270851v1_alt    147595 233 +    263054 ggcagagtagGCTAAAATCACACTTAGCTGACTGTGAAGTCATATACTgcatatcgttacttcattgatctccttgtctcgctttcccacttccctcaccccattgccccgagctgacatctgctgagcagagtgtcaacacttcagttcattcctcaggctcttctttcATGACAGAAGTC--TTTATGTTTCTGTTTTCAGGATCTACTC--Agtctgttctaatgacttctatt
s panTro5.chr15              73720227 235 -  83230942 ggcagagtagGCTAAAATCACACTTAGCTGACTGTGAAGTCATATACTgcataccgttgcttcattgatctccttgtctcactttcccacttccctcaccccattgtcccgagcagacatctgttgagcagagtgtcaacacttcagttcattcctcaggctcttctttcATGACAGAAGTC--TTTATATTTCTGTTTtcaggatctactcttggtctgttctgttgacttctatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74023820 235 -  99763055 ggcagagtagGCTAAAATCACACTTAGCTGACTGTGAAGTCATATACTgcataccattgcttcattgatctccttgtctcactttcccacttccctcaccccattgccccgagctgacatctgctgagcagagtgtcaacacttcagttcattcctcaggctcttctttcATGACAGAAGTC--TTTATATTTCTGTTTtcaggatctactcttggtctgttctgttgacttctatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        72639 235 -    281578 ggcagagtagGCTAAAATCACACTTAGCTGACTGTGAAGTCATATACTgcataccgttgcttcgctgatctccttgtctcactttcccacttccctcaccccattgtcccgagctgacatctgctgagcagagtgtcaacacttcagttcattcctcaggctcttcttccATGACAGAAGTC--TTTATATTTCTGTTTtcagggtctactcttggtctgttctgttgacttctatt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70930189 235 + 121039945 ggcagagtagGCTAAAGTCACGCTTAGCTGACTGTGAAGTCATATACCACATACTGttgctttattgatctccttgtctcgctttcccacttccctcaccccattgcccggagctggcatctgctcagcagagtgtcaacacttcagttcattcctcaggctcttctttcATGATAAAAGTC--TTTATATTTCTGTTTtcaggatccactcttggtctattctattgacttctatt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164233844 235 - 169600520 ggcagagtagGCTGAAATCACGCTTAGCCGACTGTGAAGTCCTATACCTCATACcgttgcttcgctgatctccttgtctcgctctcccacttccctcaccccatttccctgagctggggtctgctgagcagaatgtcagcacttcagttcattcctcaggctcGTCTTCCATGACAAAAGTC--TGTATATTTCTGTTTTCAGAATCCACTCTTGGTCTATTCTATTGACTTCTATt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165554294 234 - 171882078 ggcagagtagGCTGAAATCACGCTTAGCCGACTGTGAAGTCCTATACCTCATACcgttgcttcgctgatctccttgtctcgctctcccacttccctcaccccatttccctgagctggggtctgctgagcagaatgtcagcacttcagttcattcctcaggctcGTCTTCCATGACAAAAGTC--TGTATATTTCTGTTTTCAGGGTCCACTCTTGGTCTATTCTATTGACTTCTAT-
i macFas5.chr7              C 0 I 681
s macNem1.NW_012011934v1       400068 235 +   2379783 ggcagagtagGCTGAAATCACGCTTAGCCGACTGTGAAGTCCTATACCTCATACcgttgcttcgctgatctccttgtctcgctctcccacttccctcaccccatttccctgagctggggtctgctgagcagaatgtcagcacttcagttcattcctcaggctcGTCTTCCATGACAaaagtc--tgtatatttctgttttcaggatccactcttggtctattctattgacttctatt
i macNem1.NW_012011934v1    C 0 I 355
s cerAty1.NW_012001462v1       369482 235 +   4116138 ggcagagtagGCTGAAATCACGCTTAGCCGACTGTGAAGTCCTATACCTCATACcgttgctttgctgatctccttgtctcgctctcccacttccctcaccccatttccctgagctggggtctgctgagcagaatgtcagcacttcagttcatccctcaggctcgtcttccATGACAaaagtc--tgtatatttctgttttcaggatccactcttggtctattctattgacttctatt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53801424 229 +  58131712 ggcagagtagGCTGAAATCACGCTTAGCCGACTGTGAAGTCCTATACCTCATACcgttgcttcgctgatctccttgtctcgctctcccacttccctcaccccatttccctgagctggggtctgctgagcagaatgtcagcacttcagttcattcctcaggctcGTCTTCCATGACAAAAGTG--TGTATATTTCTGTTTTCAGGATCCACTCTTGG-----tctattgacttctat-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       417357 234 -   3636681 ggcagagtagGCTGAAATCACGCTTAGCCGACTGTGAAGTCCTATACCTCATACcgttgcttcgctgatctccttgtctcgctctcgcacttccctcatgccatttccctgagctggggtctgctgagcagaatgtcagcacttcagttcattcctcaggctcGTCTTCCATTACAaaagtc--tgtatatttctgttttcaggatccactcttggtctattctattgacttctat-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       396789 234 -   4457520 ggcagagtagGCTGAAATCACGCTTAGCTGACTGTGAAGTCCTATACCtcgtaccgttgcttcgctgatctccttgtctcactctcccacttccctcaccccattgccccgagctggtttctgctgagcagagtgtcagcacttcagttcattcctcaggctcgtcttccATGACAaaagtc--tgtatatttctgttttcaggatccactcttagtctattctattgacttctat-
i colAng1.NW_012115278v1    C 0 I 2
s calJac3.chr3               55211940 235 + 190850796 GGCAGAGTAGGCTAAAATCAGGCTTGGCTGACTgtgtagtcacataccacataccgttgcttcactgctctcctt-tcccact-tcccacttccctcaccccattgccccgagctggcatctgctgagccgagtgtcagcacttcagttcattcctcaggctcttctttcATGACAAAAGCCTGTGTGTATTTCTGTTTTCAGCATCCGCTCTTGGTCTATTCTACTGATTTCTATT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       291698 235 -   2086007 GGCAGAGTAGGCTAAAATCAGGCTTAGCTGACTgtgtagtcacataccgcatatcgttgcttcactgctttccgt-tctcact-tcccatgtccctcatcccgttgccccaagctggcatctgctgagcagagtgtcagcatttcagttcattcctcaggctcttctttcATGACAAAAGCCTGTGTGTACTTCTGTTTTCAGCATCTGCTCTTGGTCTATTCTATCGATTTCTATT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       357903 235 +   3831555 GGCGGAGTAGGCTAAAATCAGGCTTAGCTGACTgtgtagtcacataccgcataccgttgcttcactgctctcctt-tctcact-tcccacttccctcaccccattgccccgagctggcatctgctgagcagagtgtcagcactttggttcattcctcaggctcttctttcATGACAGAAGCCTGTGTGTATTTCTGTTTTCAGCATCCAATCTTGGTCTATTCTATTGATTTCTATT
i aotNan1.NW_018503298v1    I 421 C 0
e micMur3.chr9              116203307 1670 + 116334831 I
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=15340.000000
s hg38.chr15_KI270851v1_alt    147828 6 +    263054 tttttt-----
s panTro5.chr15              73720462 6 -  83230942 tttttt-----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74024055 6 -  99763055 tttttt-----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        72874 6 -    281578 tttttt-----
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70930424 6 + 121039945 tttttt-----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164234079 6 - 169600520 tttttt-----
i rheMac8.chr7              C 0 I 413
s macFas5.chr7              165555209 6 - 171882078 tttttt-----
i macFas5.chr7              I 681 C 0
s macNem1.NW_012011934v1       400658 6 +   2379783 tttttt-----
i macNem1.NW_012011934v1    I 355 C 0
s cerAty1.NW_012001462v1       369717 6 +   4116138 tttttt-----
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53801653 6 +  58131712 tttttt-----
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       417591 6 -   3636681 tttttt-----
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       397025 6 -   4457520 tttttt-----
i colAng1.NW_012115278v1    I 2 C 0
s calJac3.chr3               55212175 6 + 190850796 -----TAAAAA
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       291933 6 -   2086007 -----TAAAAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       358138 6 +   3831555 -----TAAAAC
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116203307 1670 + 116334831 I
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=608412.000000
s hg38.chr15_KI270851v1_alt    147834 89 +    263054 t---catttttcaatgatgtggtcttgtatctttgtcattattatatttgcttgactttcagatattgtatatgcaatattgtagcaataaa
s panTro5.chr15              73720468 92 -  83230942 ttttcatttttcaatgatgtggtcttgtatctttgtcattattatatttgcttgactttcagatattgtatatgcaatattgtagcaataaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74024061 91 -  99763055 t-ttcatttttcaatgatgtggtcttgtatctttgtcattattatatttgcttgactttcagatattgtatatgcaatattgtagcaataaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        72880 86 -    281578 t-ttcatttttcaatgatgtggtcttgtatctttgtcat-----tatttgcttgactttcagatattgtatatgcaatattgtagcaataaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70930430 92 + 121039945 ttttcatttttcaatgatgcggtcttgtatctttgtcattattatttttgcttgacttccagatattgtatatgcaatattgtagcaataaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165555215 89 - 171882078 ---tcatttttcaatgaggtggtattgtatctttgtcattattatttttgcttgagttccagatattgtatgtacaatattgtagcaataaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       400664 89 +   2379783 ---tcatttttcaatgaggtggtattgtatctttgtcattattatttttgcttgagttccagatattgtatgtacaatattgtagcaataaa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       369723 88 +   4116138 ----catttttcaatgaggtggtattgtatctttgtcattattatttttgcttgagttccagatattgtatgtgcaatattgtagcaataaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53801659 89 +  58131712 ---tcatttttcaatgaggtggtattgtatctttgtcattattatttttgcttgagttccagatattgtgtgtgcaatattgtagcaataaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       417597 89 -   3636681 ---tcatttttcagtgaggtggtattgtatctttgtcattattatttttgcttgagttccagatattgtatgtgcaatattgtagcaataaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       397031 89 -   4457520 ---tcatttttcaatgaggtggtattgtatctttgtcattattatttttgcttgagttccagatattgtatgtgcaatattgtagcaataaa
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55212181 89 + 190850796 ---GATTttttcagtgatgtggtcttttatctttgtcattattgtttctgtttgagttccagatactatatatgcaatattgtagcaataaa
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       291939 89 -   2086007 ---AATTttttcggtgatgtggtcttgtatctttgtcattattatttttgtttgagttccagatactgtatatgcaatactgtagcaataaa
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       358144 85 +   3831555 ---AAATGtttcagtgatgtggtcttgtatctttgtcattattatt----tttgagttccagatactgtatatgcaatactgtagcaataaa
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116203307 1670 + 116334831 I
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e canFam3.chr3               59927385 1349 -  91889043 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e rheMac8.chr7              164234085 413 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=49220.000000
s hg38.chr15_KI270851v1_alt    147923 6 +    263054 tcgagg
s panTro5.chr15              73720560 6 -  83230942 tcgagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74024152 6 -  99763055 ttgagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        72966 6 -    281578 tcgagg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70930522 6 + 121039945 tcgggg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165555304 6 - 171882078 tcgagg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       400753 6 +   2379783 tcgagg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       369811 6 +   4116138 tcgagg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53801748 6 +  58131712 tcaagg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       417686 6 -   3636681 tcgagg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       397120 6 -   4457520 tcgagg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55212270 6 + 190850796 ctgagg
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       292028 6 -   2086007 ttgagg
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       358229 6 +   3831555 ttgagg
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59928734 6 -  91889043 ttgagg
i canFam3.chr3              I 1349 C 0
e micMur3.chr9              116203307 1670 + 116334831 I
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e rheMac8.chr7              164234085 413 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=3293267.000000
s hg38.chr15_KI270851v1_alt    147929 373 +    263054 ctctaggtaacaatatcttcctccagagaggatgt---------tctag--------gcaatcccaggtcactgcagtccctttggaaattgaga-gaatgcgaaactgggctggttttccgtgaaggctggtctacttctaactcacctgtatttctggtgtgtggccctttgaggttccagctcagagcatg--ggatctgccaggcctctttctcctgtatgagggccctgggagtctctcagaagctccgttttgcttctcagTCTCATCCCTGCGTG-------------------------------CTTAGGTtctctgggcctctttcttcctctcgtgggtcttagactttaggaagacctcactcccttgctgcttctaggatgtcttcaaatcgacgtacttaatgttcctgt
s panTro5.chr15              73720566 373 -  83230942 ctctgggtaacaatatcttcctccagagaggatgt---------tctag--------gcaatcccaggtcactgcagtccctttggaaatcgaga-gaatgcgaaactgggctggttttctgtgaaggctggtctacttctaactcacctgtatttctggtgtgtggccctttgaggttccagctcagagcatg--gggtctgccaggcctccttctcctgtatgagggccctgGGAGTCTCTCAGAAGCTCCGTTTTCCTTCTCAGTCTCATCCCTGCTTG-------------------------------CTTAGGTtctctgggcctctttcttcctctcgtgggtcttagactttaggaagacctcactctcttactgcttctaggatgtcttcaaatcgacgtacttaatgttcctgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74024158 373 -  99763055 ctctgggtaacaatatcttcctccagagaggatgt---------tctag--------gcaatcccaggtcactgcagtccctttggaaattgaga-gaatgcgaaactgggctggttttctgtgaaggctggtctacttctaactcacctgtatttctggtgtgtggccctttgaggttccagctcagagcatg--gggtctgccaggcctccttctcctgtatgagggccctgggagtctctcagaagctccgttttgcttctcagTCTCATCCCTGCTTG-------------------------------CTTAGGTtctctgggcctctttcttcctctcgtgggtcttagactttaggaagacctcactctcttactgcttctaggatgtcttcaaatcgacgtacttaatgttcctgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        72972 373 -    281578 ctctgggtaacaatatcttcctccagagaggatgt---------tctag--------gcaatcccaggtcactgcagtccctttggaaattgaga-gaatgcgaaactgggctggttttctgtgaaggctggtctacttctaactcacctgtatttctggtgtgtagccctttgaggttccagctcagagcatg--gggtctgccaggcctctttctcctgtatgagggccctgggagtctctcagaagctccgttttgcttctcagtctcatccctgcttg-------------------------------cttaggttctctgggcctctttcttcctctcgtgggtcttagactttaggaagacctcactctcttactgcttctaggatgtcttcaaatcgacgtacttaatgttcctgt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70930528 373 + 121039945 ctctggataacaatatcttcttccagagaggatgt---------tctag--------gcaatcctaggtcactgcagtcccattggaaattgaga-gaatgtggaactgggctggttttctgtgaaggctggtctacttctaactcacctgtatttctggtgtgtggccctttgaggttccagctcagagaatg--gggtctgccaggcctctttctcctgtatgagggccctgggagtctctcagaagctctgttttgcttctcagcctcatccctgcttg-------------------------------cttaggttctctgggcctctttcttcctctcctgggtcttaggctttaggaagacctcactcccttgctgcttctaggatggcttcaaatcgacgtacttaatgttcctgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164234498 372 - 169600520 ctctgggtagcaatatcttcctccagagaggatgt---------tctag--------gcaatcctaggtcactgcaggcccgttggaaattgaga-gaatgcgaaactgggatgg-tttctgtgaagactggtctacttctcactcacctgtatttctggtgtgtggtcctttgaggttccagctcagagcgtg--gggtccgccaggcctctttctcctgtatgagggccctgggagtctgtcagaagctccgctctgcttctcTGTCTCATCCCTGCTTG-------------------------------CTTAGGTtctctgggcctctttcttcctctcatgggtcttaggctttaggaagacctcactcccttgctgcttctaggatatcttcaaatcgatgtacttcatgttcctat
i rheMac8.chr7              I 413 C 0
s macFas5.chr7              165555310 372 - 171882078 ctctgggtagcaatatcttcctccagagaggatgt---------tctag--------gcaatcctaggtcactgcaggcccgttggaaattgaga-gaatgcgaaactgggatgg-tttctgtgaagactggtctacttctcactcacctgtatttctggtgtgtggtcctttgaggttccagctcagagcgtg--gggtccgccaggcctctttctcctgtatgagggccctgGGAGTCTGTCAGAAGCTCCGCTCTGCTTCTCTGTCTCATCCCTGCTTG-------------------------------CTTAGGTTCTCTGGGCCTCTTTCTTCCTCTCATGGGTCTTAGGCTTTAGGAAGACCTCACTCCCTTGCTGCTTCTAGGATATCTTCAAATCGATGTACTTCATGTTCCTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       400759 372 +   2379783 ctctgggtagcaatatcttcctccagagaggatGT---------TCTAG--------GCAATCCTAGGTCACTGCAGGCCCGTTGGAAATTGAGA-GAATGCGAAACTGGGATGG-TTTCTGTGAAGACTGGTCTACTTCTCACTCACCTGTATTTCTGGTGTGTGGTCCTTTGAGGTTCCAGCTCAGAGTGTG--GGGTCCGCCAGGCCTCTTTCTCCTGTATGAGGGCCCTGGGAGTCTGTCAGAAGCTCCGCTTTGCTTCTCGGTCTCATCCCTGCTTG-------------------------------CTTAGGTTCTCTGGGCCTCTTTCTTCCTCTCATGGGTCTTAGGCTTTAGGAAGATCTCACTCCCTTGCTGCTTCTAGGATATCTTCAAATCGATGTACTGAATGTTCCTAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       369817 372 +   4116138 ctctgggtagcaatatcttcctccagagaggatgt---------tctag--------gcaatcctaggtcactgcaggcccgttggaaattgaga-gaatgcgaaactgggatgg-tttctgtgaagactggtctacttctcactcacctgtatttctggtgtgtggtcctttgaggttccagctcagagcgtg--gggtccgccaggcctctttctcctgtatgagggccctgaGAGTCTGTCAGAAGCTCCGCTTTGCTTCTCTGTCTCATCCCTGCTTG-------------------------------CTTAGGTtctctgggcctctgtcttcctctcatgggtcttaggctttaggaagacctcactcccttgctgcttctaggatatcttcaaatcgatgtacttaatgttcctat
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53801754 368 +  58131712 ctctgggtaacaatatcttcctccagagaggatgt---------tctag--------gcaatcctaggtcactgcaggcccgttggaaattgaga-gaatgagaaactgggctgg-tttctgtgagcactagtctgcctctcactcacctgtatttctggtgtgtggttctttgaggttccagctcagagcatg--gggtccgccaggcctctttctcctgtatgagggccctgGGAGTCTGTCAGAAGCTCCGTTTTGCTTCTCTGTCTCATCCCTGCTTG-------------------------------CTTAGGTtctctgggcctctttctt----tcatgggtcttaggctttaggaagacctcactcccttgctgcttctaggatatcttcaaatcgatgtacttaatgttcctat
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       417692 372 -   3636681 ctctgggtagcaatatcttcctccggagaggatGT---------TCTAG--------GCAATCCTAGGTCACTGCAGGCCCGTTGGAAATTGAGA-GAATGCGAAACTGGGATGG-TTTCTGTGAAGACTGGTCTACTTCTCACTCACCTGTATTTCTGGTGTGTGGTCCTTTGAGGTTCCAGCTCAGAGCGTG--GGGTCCGCCAGGCCTCTTTGTCCTGTATGAGGGCCCTGGGAGTCTGTCAGAAGCTCCGCTTTGCTTCTCTGTCTCATCCCTGCTTG-------------------------------CTTAGGTtctctgggcctctttcttcctctcatgggtcttaggctttaggaagacctcactcccttgctgcttctaggatatcttcaaatcgatgtacttaatgttcctat
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       397126 372 -   4457520 ctctgggtaacaatatcttcctccagagaggatgt---------tctag--------gcaatcctaggtcactgcaggcccggtggaaattgaga-gaatgcgaaactgggctgg-tttctgtgaagactggtctacttctcacccacctgtatttctggtgtgtggtcctttgaggttccagctcagagcatg--gggtccgccaggcctctttctcctgtatgagggccctgGGAGTCTCTCAGAAGCTCCGCTTTGCTTCTCTGTCTCATCCCTGCTTG-------------------------------CTTAGGTTCTCTGGGCCTCTTTCTTCCTCTCGTGGGTCTTAGGCTTTAGGAAGACCTCACTCCCTTGCTGCTTCTAGGATATCTTCAAATTGACGTACTTAATGTTCCTAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55212276 350 + 190850796 ctctgggtaaaaatatcttcctccagagaggatGT---------TCTAG--------GCAATCCTAGGTCACTGCAGTCCACTTGGCAATTGAGA-GGGTACGAAACTGGGCTGGTCTCTTGTG-AGGCTTGTCTGC----------------------GTGTGTGGCCCTTTGAGGCTCCAGCTCAAAGCATG--ATGTCTGCCACACCTCCTCCCCCTGTATGAGGGCCTTGGGAGTCTCTCGGAAGCTCTGCTTTGCTTCTCAGTCTCATCCCTGCTTT-------------------------------CTTGGGTTTTCTGTGCCTCTTTCTTCCTCTCATGGGACTTAGGCTGTAGGAAGACCTCACTCCCTTGCTGCTTCTGTGATGTCTTTAGACGGACGGACGGAATGTTCCTGT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       292034 368 -   2086007 ctctgggtaacaatatcttcctccagagaggatgc---------tctag--------gcaatcctaggtcactgcaatccacttggaaattgaga-gggtgcgaaactgggctggtctcctgtgaaggcttgtctacttctaactcacctgtgcttctggtgtgtggccctttgaggctCCAGCTCAGAGCATG--ATGTCTGCCACGCCTCCT---CCTGTCTGAGGG-ATTGGGAGTCTCTCAGAAGCTCTTCTCTGCTTCTCAGTCTCATCCCTACTTT-------------------------------CTTGGGTTCTCTGTGCCTCTTTCTTCCTCTTGTGGGACTTAGGCTGTAGGAAGACCTCACT-CCTTGCTGCTTCTCTGATGTCTTCAGACAGACGTACTTAATGTTCCTGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       358235 373 +   3831555 ctctgggtaacaatatcttcctccagagaggatgt---------tctag--------gcaatcctaggtcactacagtccacttggaaattgaga-ggttgcgaaactgggctggtctcctgtgaaggctcgtctacttctaagtcacctgtgtttctgatgtgtggccctttgaggctccagctccgagcatg--atgtctGCCACGCCTCCTCCTCCTGTATGAGGGCCTTGGGAGTCTCTCAGAAGCTCTGCTTTGCTTCGCAGTCTCATCCCTGCTTT-------------------------------CTTAGGTtctctgtgcctctttcttcctctcgtgggacttaggctgtaggaagacctcactcccttgctgcttctacggtgtcttcagacagacgtacttaatgttcctgt
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59928740 382 -  91889043 ctctgggtgatgatttcctcctctggagaggatctacctactaatcaagcagcaatagcagtcccaggtcactgcagagcagttgggggctgcgattttttcaaaactgggcttctttcctaggaaggcc-atctgcttccaccttatccctgcttctg--gtgtggcccttcgaagtttca-ctcaaagcatggtgtgtctaccaggctt-----tcccccatgaggaccctgg-----ctccagcagctctgctcagc-tattggtcttagccctgcccacagaatggtagatgcctcTCAGAGGATCACCCTTAGGTTCTTTTGG---CTATACTTCCCTCTTGGGGCTCAGA--------------------CTTGCTGCCT----GATGTCTTAAAACACAGGTACTTTATGTTTCTGG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116203307 1670 + 116334831 I
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=932829.000000
s hg38.chr15_KI270851v1_alt    148302  97 +    263054 ctgacctttctaattgttctAGGAACCTGTTCTTAACATTTTTTCA-------TATGTTGTCCTACGTTCAGTAGGTGTTTAGTA----TTTTTCTGTAGGTTTAAGA--
s panTro5.chr15              73720939  96 -  83230942 ctgacctttctaattgttctAGGAACCTGTTCTTAACATTTTTT-A-------TATGTTGTCCTACGTTCAGTAGATGTTTAGTA----TTTTTCTGTAGGTTTAAGA--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74024531  96 -  99763055 ctgacctttctaattgttctAGGAACCTGTTCTTAACATTTTTT-A-------TATGTTGTCCTACGTTCAGTAGATGTTTAGTA----TTTTTCTGTAGGTTTAAGA--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        73345  97 -    281578 ctgacctttctaactgttctAGGAACCTGTTCTTAACATTTTTTCA-------TATGTTGTCCTACGTTCAGTAGATGTTTAGTA----TTTTTCTGTAGGTTTAAGA--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70930901  96 + 121039945 ctgacctttctaattgttctAGGAACCTG-TCTTAACATTTTTTCA-------TATGTTGTCCTACGTCCAGTAGGTGTTTAGTA----TTTTTCTGTAGGTTTAAGA--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164234870  97 - 169600520 ctgacgtttccaattgttctAGGAACCTGTTCTTAACATTTTTTCA-------TATGTTGTCCTACGTTCAGTAGGGGTTTAGTA----TTTTTCTGTAGGTTTAAGA--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165555682  97 - 171882078 CTGACGTTTCCAATTGTTCTAGGAACCTGTTCTTAACATTTTTTCA-------TATGTTGTCCTACGTTCAGTAGGGGTTTAGTA----TTTTTCTGTAGGTTTAAGA--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       401131  97 +   2379783 CTGGCGTTTCCAATTGTTCTAGGAACCTGTTCTTAACATTTTTTCA-------TATGTTGTCCTACGTTCAGTAGGGGTTTAGTA----TTTTTCTGTAGGTTTAAGA--
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       370189  97 +   4116138 ctgacgtttccaattgttctAGGAGCCTGTTCTTAACATTTTTTCA-------TATGTTGTCCTACGTTCAGTAGGGGTTTAGTA----TTTTTCTGTAGGTTTAAGA--
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53802122  97 +  58131712 ctgatgtttccaattgttctAGGAACCTGTTCTTAACATTTTTTCA-------TATGTTGTCCTACGTTCAGTAGGGGTTTAGTA----TTTTTCTGTAGGTTTAAGA--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       418064  97 -   3636681 ctgacgtttccaattgttctAGGAACCTGTTCTTAACATTTTTTCA-------TATGTTGTCCTACGTTCAGTAGGGGTTTAGTA----TTTTTCTGTAGGTTTAAGA--
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       397498  97 -   4457520 CTGACGTTTGCAATTGTTCTAGGAACCTGTTCTTAACATTTTTCCA-------TATGTTGTCCTACGTTCAGTAGGGGTTTAGTA----TTTTTCTGTAGGTTTAAGA--
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55212626  93 + 190850796 CTGACCTTTCTAATTGTTCTAGGAACCTATTCTTAAAACTTTTTTA-------TATGTTGTTCTATGTGCAGTAGGTGTTTAGTG----TTTTTCTGTAGTTT----A--
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       292402  93 -   2086007 CTGACTTTTCTAATTGTTCTAGGAACCTATTTTTAAAACTTTTTTA-------TATGTTATCCTACATTCTGCAGGTGTTTAGTG----GTTTTCTGTAGTTT----A--
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       358608  93 +   3831555 ctgacctttctaattgttctAGGAACCTATTCTTAAAACTTTTTTA-------TGTGTTGTCCTACGTTCAGTAGGTGTTTAGTG----TTTTTCTGTAGTTT----A--
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116204977 103 + 116334831 CTGGCCTTTCTAGTTTTTCTAGGAACCTGTTCCTAAAAGTTTTTGA-AATTGGTATGGTGTGCTATGTTCAATAGATACTTAGTA----TTTTTATGTAGGATTAAGG--
i micMur3.chr9              I 1670 C 0
s canFam3.chr3               59929122 110 -  91889043 CTGGCTTCCCCAGTTGCTCTAGAAACCTGTGTTTAAAATTTTTTTGGAGTTGGTATGTTGTCCTGTGTTTAGCAGTTGCTTAGTAAGTGTTTTTCTGCAAGGCTACGAAA
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13431282 1208 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=281092.000000
s hg38.chr15_KI270851v1_alt    148399 22 +    263054 AAAAAAGCCATATACCTTTACT
s panTro5.chr15              73721035 22 -  83230942 AAAAAAGCCATATACCTTTACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74024627 22 -  99763055 AAAAAAGCCATATACCTTTACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        73442 22 -    281578 AAAAAAGCCATATACCTTTACT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70930997 22 + 121039945 AAAAAAGCCATATACCTTTACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164234967 22 - 169600520 AAAAAAGCCGTATACCTTTACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165555779 22 - 171882078 AAAAAAGCCGTATACCTTTACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       401228 22 +   2379783 AAAAAAGCCGTATACCTTTACT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       370286 22 +   4116138 AAAAAAGCCATATACCTTTACT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53802219 22 +  58131712 AAAAAAGCTGTATACCTTTACT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       418161 22 -   3636681 AAAAAAGCCGTATACCTTTACT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       397595 22 -   4457520 AAAAAAGCCGTATACCTTTACT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55212719 22 + 190850796 AGAAAAGCCATATACCGTTACT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       292495 22 -   2086007 AGAAAAGCCATATACCGTTACT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       358701 22 +   3831555 AGAAAAGCCATATACTGTTACT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116205080 22 + 116334831 AAAAAAGCCATATACCTTTACT
i micMur3.chr9              C 0 I 5
s proCoq1.NW_012148396v1     13432490 22 +  16154928 AAAAAAGCCATATACCTTTACT
i proCoq1.NW_012148396v1    I 1208 I 263
s canFam3.chr3               59929232 22 -  91889043 AAAAAAGCCAGATACCTTTATT
i canFam3.chr3              C 0 C 0
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=1213675.000000
s hg38.chr15_KI270851v1_alt    148421 134 +    263054 ----CATCTGCAAATATTTGA-----AGATTACTTTTCT------GTCAAATTGTAAGGACATGAAAAAGAAACATTTTCTAACCTATACATTAATCAGA--------TATTCATTTGTTATATTATTCAGTTTTGGATTTTATTGCCTGACTCTAT
s panTro5.chr15              73721057 134 -  83230942 ----CATCTGCAAATATTTGA-----AGATTACTTTTCT------GTCAAATTGTAAGGACATGAAAAAGAAACATTTTCTAACCTATACATTAATCAGA--------TATTAATTTGTTATATTATTCAGTTTTGGATTTTATTGCCTGACTCTAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74024649 134 -  99763055 ----CATCTGCAAATATTTGA-----AGATTACTTTTCT------GTCAAATTGTAAGGACATGAAAAAGAAACATTTTCTAACCTATACATTAATCAGA--------TATTAATTTGTTATATTATTCAGTTTTGGATTTTATTGCCTGACTCTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        73464 129 -    281578 ----CATCTGCAAATATTTGA-----AGATTACTTTTCT------GTCAAATTGTAAGGACATGAAAAAGAAACATTTTCTAACCTATACATTAATCAGA--------TATTCATTTG-----TTATTCAGTTTTGGATTTTATTGCCTGACTCTAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70931019 134 + 121039945 ----CATCTGCAATTATTTGA-----AGATTACTTTTCT------GTCAAATTGTAAGGACATGAAAAAGAAACATTTTCTAACCTATTCATTAATCAGA--------TATTCATTTGTTATATTATTCTGTTTTGGATTTTATTGCCTGATTCTAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164234989 134 - 169600520 ----CATCTGCAAATATTTGAAC---AGATTACTTCTCT------GTCAAATTGTAAGGACATGAAAAAGAAACATTTTCTAACCTATACGTTAATCAGG--------TATTCATTTGTTATATTATTCTGTTTTGGATTTTATTGCCTGACTAT--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165555801 134 - 171882078 ----CATCTGCAAATATTTGAAC---AGATTACTTCTCT------GTCAAATTGTAAGGACATGAAAAAGAAACATTTTCTAACCTATACGTTAATCAGG--------TATTCATTTGTTATATTATTCTGTTTTGGATTTTATTGCCTGACTAT--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       401250 134 +   2379783 ----CATCTGCAAATATTTGAAC---AGATTACTTCTCT------GTCAAATTGTAAGGACATGAAAAACAAACATTTTCTAACCTATACGTTAATCAGG--------TATTCATTTGTTATATTATTCTGTTTTGGATTTTATTGCCTGACTAT--
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       370308 134 +   4116138 ----CATCTGCAAATATTTGAAC---AGATTATTTCTCT------GTCAAATTGTAAGGACATGAAAAAGAAACATTTTCTAACCTATACGTTAATCAGG--------TATTCATTTGTTATATTATTCTGTTTTGGATGTTATTGCCTGACTAT--
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53802241 134 +  58131712 ----CATCTGCAAATATTTGAAC---AGATTACTTCTCT------GTCAAATTGTAAGGACATGAAAAAGAAACATTTTCTAACCTATACGTTAATCAGG--------TATTCATTTGTTATATTATTCTGTTTTGGATTTTATTGCCTGACTAT--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       418183 132 -   3636681 ----CATCTGCAAATATTTGAAC---AGATTACTTCTCT------GTCAAATTTTAAGGACATGAAAAAGAAACATTTTCTAACCTATACGTTAATCAGG--------TATTCATTTGTTATATTAT--TGTTTTGGATTTTATTGCCTGACTAT--
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       397617 134 -   4457520 ----CATCTGCAAATGTTTGAAC---AGATTACTTCTCT------GTCAAATTGTAAGGACATGAAAAAGAAACATTTTCTAACCTATACGTTAATCAGA--------TATTCATTTGTTATATTATTCTGTTTTGGATTTTATTGCCCAACTAT--
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55212741 127 + 190850796 ----TACCTGAAAATATTTAAAC---AGATT--------------GTCAAATTATAAGGACATGAAAAAGAAACT-TTTCTAACCTCTATGCTAATCGGA--------TATTCATTTGTTGTATTATTCTGTTTTGGATTGTATTGCCTGGCTCTAT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       292517 141 -   2086007 ----TATCTGCAAATGTTTAAAC---AGATTACCTTTTTTAAAAAGTCAAATTGTAAGGAAATGAAAAAGAAACA-TTTCTAACCTATATGTTAATCAGA--------CATTCATTTGTTGTATTATTCTGTTTTGGATTGTATTGCCTGACTCCAT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       358723 132 +   3831555 ----TATCTGCAAGTATTTAAAC---AGATTACCTTTTTT-----GTCAAATTGTAAGGACATGAAAAAGAAACA-TTTCTAACCTATGTGTTAATCAGA--------TCTTCATTTGTTATATTATTCTGTTTTGGATTGTATTGCCTGA----AT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116205107 143 + 116334831 ----CATCTGCAAATATTTGAAC---AGATTACATTTCA------GGCAAATTTTAAAGATATG-AAAACAAACATTTCCTAACCTATAAGTTCATCAAAAGGCCATTTATTCATTTGTCATATTATTCTATTTTGGATTACATTGCCTAACTCTAC
i micMur3.chr9              I 5 C 0
s canFam3.chr3               59929254 145 -  91889043 TGAGTGTCTGCAAGTACTTGAACATAAGATTACATTTCG------GGCATATCTTAAAGATAAGTAAAATAAACATTTTCTAA-CTATAAGTTAATAAAAATGTCATTTAACCATTTGGCATA-----CTGTTTTAGATTATATTCCAtaatttttt
i canFam3.chr3              C 0 I 321
e proCoq1.NW_012148396v1     13432512 263 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=129958.000000
s hg38.chr15_KI270851v1_alt    148555 20 +    263054 AGTTCTGA---AGTCACTTTAAT
s panTro5.chr15              73721191 20 -  83230942 AGTTCTGA---AGTCACTTTAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74024783 20 -  99763055 AGTTCTGA---AGTCACTTTAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        73593 20 -    281578 AGTTCTGA---AGTCACTTTAAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70931153 20 + 121039945 AGTTCTCA---AGTCATTTTAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164235123 12 - 169600520 -----------AGTCATTTTAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165555935 12 - 171882078 -----------AGTCATTTTAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       401384 12 +   2379783 -----------AGTCATTTTAAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       370442 12 +   4116138 -----------AGTCATTTTAAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53802375 12 +  58131712 -----------AGTCATTTTAAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       418315 12 -   3636681 -----------AGTCATTTTAAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       397751 12 -   4457520 -----------AGTCATTTTAAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55212868 20 + 190850796 AGTTGTGA---AGTCATTTTAAT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       292658 20 -   2086007 AGTTCTGA---AGTCATTTTAAT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       358855 20 +   3831555 AGTTCTGA---AGTCATTTTAAT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116205250 23 + 116334831 AGTTGTGAGGTAGTCATTTTAAT
i micMur3.chr9              C 0 C 0
e proCoq1.NW_012148396v1     13432512 263 +  16154928 I
e canFam3.chr3               59929399 321 -  91889043 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=9555.000000
s hg38.chr15_KI270851v1_alt    148575 1 +    263054 A
s panTro5.chr15              73721211 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74024803 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        73613 1 -    281578 A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70931173 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164235135 1 - 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165555947 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       401396 1 +   2379783 A
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       370454 1 +   4116138 A
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53802387 1 +  58131712 A
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       418327 1 -   3636681 A
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       397763 1 -   4457520 A
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       292678 1 -   2086007 A
i cebCap1.NW_016107707v1    C 0 I 29
s aotNan1.NW_018503298v1       358875 1 +   3831555 A
i aotNan1.NW_018503298v1    C 0 I 1
s micMur3.chr9              116205273 1 + 116334831 A
i micMur3.chr9              C 0 C 0
e proCoq1.NW_012148396v1     13432512 263 +  16154928 I
e canFam3.chr3               59929399 321 -  91889043 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55212888 0 + 190850796 C

a score=49358.000000
s hg38.chr15_KI270851v1_alt    148576 9 +    263054 AATGCCTTA
s panTro5.chr15              73721212 9 -  83230942 AATGCCTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74024804 9 -  99763055 AATGCCTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        73614 9 -    281578 AATGCCTCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70931174 9 + 121039945 AATGCCTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164235136 9 - 169600520 AATGCCTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165555948 9 - 171882078 AATGCCTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       401397 2 +   2379783 AA-------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       370455 9 +   4116138 AATGCCTTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53802388 9 +  58131712 AATGCCTTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       418328 9 -   3636681 AATGCCTTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       397764 9 -   4457520 AATGCCTTA
i colAng1.NW_012115278v1    C 0 C 0
s micMur3.chr9              116205274 9 + 116334831 AATGCCTTA
i micMur3.chr9              C 0 I 671
e proCoq1.NW_012148396v1     13432512 263 +  16154928 I
e canFam3.chr3               59929399 321 -  91889043 I
e aotNan1.NW_018503298v1       358876 1 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e cebCap1.NW_016107707v1       292679 29 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55212888 0 + 190850796 C

a score=884377.000000
s hg38.chr15_KI270851v1_alt    148585 168 +    263054 ACGggctgggtgcggtggctccc-gcctgtaatccc-----------aggccgaggcgggtggatcacaaggtcaggagatcgagaccatccaggctaacacggtgaaaccctgtctctactaaaaatacacaaaaaattagctgggcgtggtggcgtgcgcctgtagtcccagctactc
s panTro5.chr15              73721221 168 -  83230942 ACGggctgggtgcggtggctccc-gcctgtaatccc-----------aggccgaggcgggtggatcacaaggtcaggagatcgagaccatccaggctaacacggtgaaaccccgtctctactaaaaatacacaaaaaattagccgggtgtggtggcgtgcgcctgtagtcccagctactc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74024813 168 -  99763055 ACGggctgggtgcggtggctccc-gcctgtaatccc-----------aggccgaggcgggtggatcacaaggtcaggagatcgagaccatccaggctaacacggtgaaaccccgtctctactaaaaatacacaaaaaattagccgggcgtggtggcgtgcgcctgtagtcccagctactc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        73623 168 -    281578 ACGggctgggtgcggtggctcac-gcctgtaatccc-----------aggccgaggcgggtggatcacaaggtcaggagatcgagaccatcctggctaacatggcgaaaccccgtctctactaaaaatacacaaaaaattagccgggcgtggtggcatgtgcctgtagtgccagctactc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70931183 179 + 121039945 ACGggctgggtgcggtggctcac-gcctgtaatcccagcactttgggaggccgaggagggtggatcacgaggtcaggagatcgagaccgtcctggctaacatggtgaaacgccgtctctactaaaaatacacaaaaaattagctgggcgtggtggcagatgcctgtagtcccagctactc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164235145 177 - 169600520 ACGggtcgggcgcggtggctcac-gcctgtaatcccagcactttgggaggctgaggtgggtggatcatgaggtcaggagattgagaccatcctggctaacacggtgaaaccccatctctactaaaaat--acaaaaaattagccgggcgtgatggcaggggcctgtagtcccagctactc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165555957 177 - 171882078 ACGggtcgggcgcggtggctcac-gcctgtaatcccagcactttgggaggctgaggtgggtggatcatgaggtcaggagattgagaccatcctggctaacacggtgaaaccccatctctactaaaaat--acaaaaaattagccgggcgtgatggcgggggcctgtagtcccagctactc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       401399 161 +   2379783 --------------gtggctcacagcctgtaatcccagcacttt-ggaggctgaggtgggtggatcatgaggtcaggagatcgagaccatcctggctaaca-ggtgaaaccccatctctactaaaaat--acaaaaattaagcc-ggcatgatggcgggtggctgtagtcccagctactc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       370464 177 +   4116138 ACGggccgggtgcggtggctcac-gcctgtaatcccagcactttgggaggctgaggtgggtggatcatgaggtcaggagattgagaccatcctggctaacacggtgaaaccccgtctctactaaaaat--acaaaaaattagccgggcgtggtggcgggtgcctgtagtcccagctactt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53802397 177 +  58131712 ACGggccgggcgcggtggctcac-gcctgtaatcccagcactttgggaggctgaggtgggtggatcatgaggtcaggagattgagaccatcctggctaacacggtgaaaccccatctctactaaaaat--acaaaaaattagccgggcgtgatggcgggtgcctgtggtcccagctactc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       418337 176 -   3636681 ACGggccgggcgcggtggctcac-gcctgtaatcccagcactttgggaggctgaggtgggtggatcatgagttcaggagattgagaccatcctggctaacatggtgaaaccccatctctaccaaaaat--acaaaaaattagccgggcgtgatgac-ggcgcctgtagtcccagctactc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       397773 177 -   4457520 ACAggccgggtgcggtggttcat-gcctgtaatcccagcactttgggaggctgaggtgggtggatcatgaggtcaggagattgagaccatcctggctaacacggtgaaaccccatctctactaaaaat--acaaaaaattaaccaggcctggtggcgggtgcctgtagtcccagctactc
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116205283 671 + 116334831 I
e proCoq1.NW_012148396v1     13432512 263 +  16154928 I
e canFam3.chr3               59929399 321 -  91889043 I
e aotNan1.NW_018503298v1       358876   1 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e cebCap1.NW_016107707v1       292679  29 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55212888   0 + 190850796 C

a score=102005.000000
s hg38.chr15_KI270851v1_alt    148753 16 +    263054 gggaggctgaggcagg
s panTro5.chr15              73721389 16 -  83230942 gggaggctgaggcagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74024981 16 -  99763055 gggaggctgaggcagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        73791 16 -    281578 gggaggctgaggcagg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70931362 15 + 121039945 gggaggc-gaggcagg
i nomLeu3.chr6              C 0 I 52
s rheMac8.chr7              164235322 16 - 169600520 aggaggctgaggcagg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165556134 16 - 171882078 aggaggctgaggcagg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       401560 16 +   2379783 aggaggctgaggcagg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       370641 16 +   4116138 gggaggctgaggcagg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53802574 16 +  58131712 gggaggctgaggcagg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       418513 16 -   3636681 gggaggctgaggcagg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       397950 16 -   4457520 gggaggctgaggcagg
i colAng1.NW_012115278v1    C 0 C 0
s canFam3.chr3               59929720 16 -  91889043 gggagcccgacgtggg
i canFam3.chr3              I 321 C 0
e micMur3.chr9              116205283 671 + 116334831 I
e proCoq1.NW_012148396v1     13432512 263 +  16154928 I
e aotNan1.NW_018503298v1       358876  1 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e cebCap1.NW_016107707v1       292679 29 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55212888  0 + 190850796 C

a score=160650.000000
s hg38.chr15_KI270851v1_alt    148769 35 +    263054 agaatggcatgaacccggg----------------gagccaaga-tggcgcc
s panTro5.chr15              73721405 35 -  83230942 agaatggcatgaacccggg----------------gagccaaga-tggcgcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74024997 35 -  99763055 agaatggcatgaacccggg----------------gagccaaga-tggcgcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        73807 35 -    281578 agaatggcatgaacccggg----------------gagccaaga-tggcgcc
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164235338 51 - 169600520 agaatggtgtgaacccgggaggcggagcttgcagtgagctgaga-tcgcgcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165556150 51 - 171882078 agaatggtgtgaacccgggaggcggagcttgcagtgagctgaga-tcgcgcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       401576 51 +   2379783 agaatggtgtgaa-ccgggaggcggagctttcagtgagctgagagtcgcgcc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       370657 51 +   4116138 agaatggtgtgaacccgggaggcggagcttgcagtgagctgaga-tcgcgcc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53802590 51 +  58131712 agaatggtgtgaacccgggaggcggagcttgcagtgagctgaga-tcgcgcc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       418529 51 -   3636681 agaatggtgtgaacccgggaggcggagcttgcagtgagctgaga-tcgcgcc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       397966 51 -   4457520 agaatggcgtgaacccgggaggcggagcttgcagtgagccgaga-tcgcgcc
i colAng1.NW_012115278v1    C 0 C 0
s canFam3.chr3               59929736 29 -  91889043 ------actcgatcccggg----------------tctccagga-tcatacc
i canFam3.chr3              C 0 I 179
e micMur3.chr9              116205283 671 + 116334831 I
e proCoq1.NW_012148396v1     13432512 263 +  16154928 I
e aotNan1.NW_018503298v1       358876  1 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e cebCap1.NW_016107707v1       292679 29 -   2086007 I
e nomLeu3.chr6               70931377 52 + 121039945 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55212888  0 + 190850796 C

a score=5005.000000
s hg38.chr15_KI270851v1_alt    148804 1 +    263054 a
s panTro5.chr15              73721440 1 -  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74025032 1 -  99763055 a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        73842 1 -    281578 a
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164235389 1 - 169600520 a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165556201 1 - 171882078 a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       401627 1 +   2379783 a
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       370708 1 +   4116138 a
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53802641 1 +  58131712 a
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       418580 1 -   3636681 a
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       398017 1 -   4457520 a
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116205283 671 + 116334831 I
e proCoq1.NW_012148396v1     13432512 263 +  16154928 I
e canFam3.chr3               59929765 179 -  91889043 I
e aotNan1.NW_018503298v1       358876 1 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e cebCap1.NW_016107707v1       292679 29 -   2086007 I
e nomLeu3.chr6               70931377 52 + 121039945 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55212888 0 + 190850796 C

a score=288871.000000
s hg38.chr15_KI270851v1_alt    148805 55 +    263054 ctgcactcgagcctgggcgacagagcaagactctgtctc--------------------------------aaaaaaaaaaaaaaaa
s panTro5.chr15              73721441 55 -  83230942 ctgcactccagcctgggcgacagagcaagactctgtctc--------------------------------aaaaaaaaaaaaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74025033 55 -  99763055 ctgcactccagcctgggcgacagagcaagactctgtctc--------------------------------aaaaaaaaaaaaaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        73843 55 -    281578 ctgcactccagcctgggcgacagagcaagactctgtctc--------------------------------aaaaaaaaaaaaaaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70931429 55 + 121039945 ctttactccagcctgggcgacagagcgaggctccatctc--------------------------------aaaaaaaaaaaaaaaa
i nomLeu3.chr6              I 52 C 0
s rheMac8.chr7              164235390 55 - 169600520 ctgcactccagcctgggcgacagagcaagaccccatctc--------------------------------aaaaaaaaaaaaaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165556202 55 - 171882078 ctgcactccagcctgggcgacagagcaagaccccatctc--------------------------------aaaaaaaaaaaaaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       401628 87 +   2379783 ctgcactccagcctgggcgacagagcaagactccgtctcaaaaaaaaaacaaaaaaaaaaaaaaaaataaaaaaaaaaaaaaaaaaa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       370709 53 +   4116138 ctgcactccagcctgggcaacagagcaagactccatctc--------------------------------aaaaaaaaaaaaaa--
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53802642 56 +  58131712 ctgcactccagcctgggcgacagggcgagactccatctc-------------------------------aaaaaaaaaaaaaaaaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       418581 57 -   3636681 ctgcactccagcctgggcgacagagcaagactccatctc------------------------------aaaaaaaaaaaaaaaaaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       398018 55 -   4457520 ctgtactccagcctgggcgacagagcgagactccatctc--------------------------------aaaaaaaaaaaaaaaa
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116205283 671 + 116334831 I
e proCoq1.NW_012148396v1     13432512 263 +  16154928 I
e canFam3.chr3               59929765 179 -  91889043 I
e aotNan1.NW_018503298v1       358876  1 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e cebCap1.NW_016107707v1       292679 29 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55212888  0 + 190850796 C

a score=-11396.000000
s hg38.chr15_KI270851v1_alt    148860 4 +    263054 ---a----aaa
s panTro5.chr15              73721496 1 -  83230942 ---a-------
i panTro5.chr15             C 0 C 0
s nomLeu3.chr6               70931484 8 + 121039945 ---aaaaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164235445 2 - 169600520 ---aT------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165556257 2 - 171882078 ---aT------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       401715 2 +   2379783 ---aT------
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53802698 2 +  58131712 ---aT------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       418638 2 -   3636681 ---aT------
i manLeu1.NW_012102332v1    C 0 C 0
s canFam3.chr3               59929944 4 -  91889043 AATA-------
i canFam3.chr3              I 179 C 0
e micMur3.chr9              116205283 671 + 116334831 I
e proCoq1.NW_012148396v1     13432512 263 +  16154928 I
e aotNan1.NW_018503298v1       358876 1 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e cebCap1.NW_016107707v1       292679 29 -   2086007 I
e panPan2.chr15              74025088 0 -  99763055 C
e gorGor5.CYUI01000141v1        73898 0 -    281578 C
e colAng1.NW_012115278v1       398073 0 -   4457520 C
e cerAty1.NW_012001462v1       370762 0 +   4116138 C
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55212888 0 + 190850796 C

a score=-805.000000
s hg38.chr15_KI270851v1_alt    148864 2 +    263054 -aa
s nomLeu3.chr6               70931492 2 + 121039945 -aa
i nomLeu3.chr6              C 0 C 0
s calJac3.chr3               55212888 2 + 190850796 -AG
i calJac3.chr3              C 0 C 0
s canFam3.chr3               59929948 2 -  91889043 GA-
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116205283 671 + 116334831 I
e proCoq1.NW_012148396v1     13432512 263 +  16154928 I
e aotNan1.NW_018503298v1       358876 1 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e cebCap1.NW_016107707v1       292679 29 -   2086007 I
e panPan2.chr15              74025088 0 -  99763055 C
e panTro5.chr15              73721497 0 -  83230942 C
e gorGor5.CYUI01000141v1        73898 0 -    281578 C
e colAng1.NW_012115278v1       398073 0 -   4457520 C
e manLeu1.NW_012102332v1       418640 0 -   3636681 C
e cerAty1.NW_012001462v1       370762 0 +   4116138 C
e macNem1.NW_012011934v1       401717 0 +   2379783 C
e rheMac8.chr7              164235447 0 - 169600520 C
e chlSab2.chr26              53802700 0 +  58131712 C
e saiBol1.JH378292             274062 8736 -   2682657 I
e macFas5.chr7              165556259 0 - 171882078 C

a score=275560.000000
s hg38.chr15_KI270851v1_alt    148866 33 +    263054 TGCCTTAACTGTTTGCTTGCCTAGTCCTGATTG
s panTro5.chr15              73721497 33 -  83230942 TGCCTTAACAGTTTGCTTGCCTAGTCCTGATTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74025088 33 -  99763055 TGCCTTAACGGTTTGCTTGCCTAGTCCTGATTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        73898 33 -    281578 TGCCTTAACGGTTTGCTTGCCTAGTCCTGATTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70931494 33 + 121039945 TGCCTTAACGGTTTGCTTGCCTAGTCCTGATTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164235447 33 - 169600520 TGCCTTAACGGTTTGCTTGCCTAGTTCTGATTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165556259 33 - 171882078 TGCCTTAACGGTTTGCTTGCCTAGTTCTGATTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       401717 33 +   2379783 TGCCTTAACGGTTTGCTTGCCTAGTTCTGATTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       370762 29 +   4116138 ----TTAACGGTTTGCTTGCCTAGTTCTGATTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53802700 33 +  58131712 TGCCTTAACGGTTTGCTTGCCTAGTTCTGATTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       418640 33 -   3636681 TGCCTTAACGGTTTGCTTGCCTAGTTCTGATTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       398073 33 -   4457520 TGCCTTAACAGTTTGATTGCCTAGTTCTGATTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55212890 33 + 190850796 TGCCTTAATGGTTTGCTTGCCCAGTCCTGTTTG
i calJac3.chr3              C 0 C 0
s aotNan1.NW_018503298v1       358877 33 +   3831555 TGCCTTAATGGTTTGCTTGCCCAGTCCTGTTTG
i aotNan1.NW_018503298v1    I 1 C 0
s canFam3.chr3               59929950 33 -  91889043 TATTTTAAGGGTTGGCTTGCCCAATCCGGTTTG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116205283 671 + 116334831 I
e proCoq1.NW_012148396v1     13432512 263 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e cebCap1.NW_016107707v1       292679 29 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=492905.000000
s hg38.chr15_KI270851v1_alt    148899 56 +    263054 GTATTAAAATATTGGTGGCCTATGTATGGGAGCGTGA-AGGCTTGCCCTGGCTGCCG
s panTro5.chr15              73721530 56 -  83230942 GTATTAAAATATTGGTGGCCTATGTATGGGAGCGTGA-AGGCTTGCCCTGGCTGCCG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74025121 56 -  99763055 GTATTAAAATATTGGTGGCCTATGTATGGGAGCGTGA-AGGCTTGCCCTGGCTGCCG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        73931 56 -    281578 GTATTAAAATATTGGTGGCCTATGTATGGGAGCGTGA-AGGCTTGCCCTGGCTGCCG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70931527 56 + 121039945 GTATTAAAGTATTGGTGGCCTACGTATGGGAGCATGA-AGGCTTGCTCTGGCTGCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164235480 56 - 169600520 GTATTAAAGTACTGGTGGCCTATGTATGGGAGTGTGA-AGGCTTGCCCTGGCTGCCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165556292 56 - 171882078 GTATTAAAGTACTGGTGGCCTATGTATGGGAGTGTGA-AGGCTTGCCCTGGCTGCCG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       401750 56 +   2379783 GTATTAAAGTACTGGTGGCCTACGTATGGGAGTGTGA-AGGCTTGCCCTGGCTGCCG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       370791 56 +   4116138 GTATTAAAGTACTGGTGGCCTACGTATGGGAGTGTGA-AGGCTCGCCCTGGCTGCCG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53802733 56 +  58131712 GTATTAAAGTACTGGTGGCCTACGTAGGGGAGCGTGA-AGGCTTGCCCTGGCTGCCG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       418673 56 -   3636681 GTATTAAAGTACTGGTGGCCTACGTATGGGAGTGTGA-AGGCTTGCCCTGGCTGCCG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       398106 56 -   4457520 GTATTAAAGTACTGGTGGCCTACATATGGGAGCGTGA-AGGCTTGCCCTGGCTGCTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55212923 56 + 190850796 GCATTAAAGTGTTGGTGGCCTACACATGGGAGCTTGA-AGGCTTGCCCTGGCTGCCT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       292708 56 -   2086007 GTATTAAAGTATTGGTGGCCTACACACGGGAGCTTGA-AGGCTTGCCCTGGTTGCCT
i cebCap1.NW_016107707v1    I 29 C 0
s aotNan1.NW_018503298v1       358910 56 +   3831555 TCATTAAAGTATTGGTGGCCTACAAATGGGAGCTTGA-AGGCGTGCCCTGGCTGCCT
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59929983 56 -  91889043 GTGTTCAAGTATCAGTAGCACCAATGTGGGGGATTCAGGGGCTCTCCCAGGCCCTT-
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116205283 671 + 116334831 I
e proCoq1.NW_012148396v1     13432512 263 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=2443725.000000
s hg38.chr15_KI270851v1_alt    148955 235 +    263054 TGCTGCAGGTGTGGGTGCATGTTAtggtgttggtgggaagcgaataagccttggagttgggcctcttcccaaatcccgcctctcacagcctcagtgttgtgtggcctttggtcaagtcattggccttctgagcttcagtttagtaacttacaaaaagtgagcctgttactgcctctttt-gctggggtcttttgacgatgaaaGTGCCTTTACTTGCCATGTCATTTCAGAGGTGT
s panTro5.chr15              73721586 235 -  83230942 TGCTGCAGGTGTGGGTGCATGTTAtggtgttggtgggaagcgaataagccttggagttgggcctcttcccaaatcccacctctcacagcctcagtgttgtgtggcctttggtcaagtcattggccttctgagcttcagtttagtaacttacaaaaagtgagcctgttactgcctctttt-gctggggtcttttgacgatgaaaGTGCCTTTACTTGCCATGTCATTTCAGAGGTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74025177 235 -  99763055 TGCTGCAGGTGTGGGTGCATGTTAtggtgttggtgggaagcgaataagccttggagttgggcctcttcccaaatcccacctctcacagcctcagtgttgtgtggcctttggtcaagtcattggccttctgagcttcagtttagtaacttacaaaaagtgagcctgttactgcctctttt-gctggggtcttttgacgatgaaaGTGCCTTTACTTGCCATGTCATTTCAGAGGTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        73987 235 -    281578 TGCTGCAGGTGTGGGTGCATGTTAtggtgttggtgggaagcgaataagccttggagttgggcctcttcccaaatcccacctctcacagcctcagtgttgtgtggcctttggtcaagtcattggccttctgagcttcagtttagtaacttacaaaaagtgagcctgttactgcctctttt-gcttgggtcttttgacgatgaaaGTGCCTTTACTTGCCATGTCATTTCAGAGGTGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70931583 235 + 121039945 TGCTGCAGGTGTGGGTGCATGTTAtggtgttggtgggaagcgaataagccttggagttgggcctcttcccaaatcccacctctcacagcctcggtgttgtgtggcctttggtgaagtaattgaacctttgagcttcagtttactaacttacaaaaagtgagcctgttactgcctctttt-gctggggtcttttgacgatgaaaGTGCCTTTACTTGCCATGTCATTTCAGAGGTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164235536 235 - 169600520 TGCTGCAGGTGTGGGCGTGTGTTAtggtgttggtgggaagcaaataagccttggagttgggcctcttcccaaatcccacctctcacagcctcaatgttgtgtggcctttggtcaagtaattgaacctctgagcttctgtttacgaacttacaaaaagtgagcctgttactgcctctctt-gccgcggtcttttgacgatgaaaGTGCCTTTACTTGCCACGTCATTTCAGAGGTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165556348 235 - 171882078 TGCTGCAGGTGTGGGCGTGTGTTAtggtgttggtgggaagcaaataagccttggagttgggcctcttcccaaatcccacctctcacagcctcaatgttgtgtggcctttggtcaagtaattgaacctctgagcttctgtttacgaacttacaaaaagtgagcctgttactgcctctctt-gctgcggtcttttgacgatgaaaGTGCCTTTACTTGCCATGTCATTTCAGAGGTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       401806 235 +   2379783 TGCTGCAGGTGTGGGTGTGTGTTAtggtgttggtgggaagcaaataagccttggagttgggcctcttcccaaatcccacctctcacagcctcaatgttgtgtggcctttggtcaagtaattgaacctctgagcttctgtttacgaacttacgaaaagtgagcctgttactgcctctctt-gctgcggtcttttgacgatgaaaGTGCCTTTACTTGCCATGTCATTTCAGAGGTAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       370847 235 +   4116138 TGCTGCAGGTGTGGGCGTGTGTTAtggtgttggtgggaagcaaataagccttggagttgggcctcttcccaaatcccacctctcacagcctcaatgttgtgtgacctttggtcaagtaattgaacctctgagcttctgtttacgaacttacaaaaagtgagcctgttactgcctctctt-gctgcggtcttttgacgatgaaaGTGCCTTTACTTGCCATGTCATTTCAGAGGTGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53802789 235 +  58131712 TGCTGCAGGTGTGGGTGTGTGTTGTGCTGTTGgtgggaagcaaataagccttggagttgggcctcttcccaaatcccacgtctcacagcctcaatgttgtgtggcctttggtcaagtcattgaacctctgagcttctgtttactaacttacaaaaagtgagcctgttactgcctctttt-gttgcggtcttttgatgatgaaaGTGCCTTTACTTGCCATGTCATTTCAGAGTTGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       418729 235 -   3636681 TGCTGCAGGTGTGGGCGTGTGTTTtggtgttggtgggaagcaaataagccttggagttgggcctcttcccaaatcccacctctcacagcctcagtgttgtgtgacctttggtcaagtaattgaacctctgagcttctgtttacgaacttacaaaaagtgagcctgttactgcctctctt-gctgcggtcttttgacgatgaaaGTGCCTTTACTTGCCATGTCATTTCAGTGGTGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       398162 235 -   4457520 TCCTGCAGGTGTGGGTGTGTGTTAtggtgttggtgggaagcaaataagtcttggagttgggcctcttcccaaatcccacctctcacagcctcaatgttgtgtggcctttggtcaagtaattgaacctctgagcttctgtttactaacttacaaaaagtgagcctgttactgcctctttt-gctgcggtcttttgacgatgaaaGTGCCTTTACTTGCCATGTCATTTCAGAGGTGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55212979 235 + 190850796 TACTGCAGGTATGGGTGCATGTTATGATGTTGgtggcaagcgaataagccttcgagttaggcctcttcccaaatcccacccctcacagcctcggtgatgtgtggcctttggtcaagtaattgaacttctgagcttcattttactgatttgcaaaaagtgggcctgttcctgcctctttt-gctggggtcttttgacaatgaaaGTGCCTTTCCTTGTCATGTCATTTCAGAGGTGT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       292764 235 -   2086007 TACTGCAGGTATGGGTGCATGTTATGACGTTGgtgggaagtgaataagccttggagttaggcctcttcccaaatcccacccctcgcagtctcagtgttgtgtggcctttggtcaagtaattgaacttctgagcttcattttactgatttacaaaaagtgggcctgttactgcctctctt-gctggggtctttggacgatgaaaATGCCTTTACTTGTCATGTCATTTCAGAGGTGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       358966 235 +   3831555 TACTGCAGGTATGGGTGCATATTgtgatgttggtgggaagcgaataagccttggagttaggcgtcttcccaaatcccccccctcacagcctcagtgttgtgtggcctttggtcaagtaattgaacttctgagcttcattttactgatttacaaaaagtgggcatgttactgcctctttt-gctggggtcttttgacgatgaaaATGCCTTTACTTGTCATGTCATTTCAGAAGTGT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13432775 230 +  16154928 TGCTGCAGGTGCaagtgca-gttgtggtgttggtgggaagagaacaagcct--gagtgagggctcttcccagatcccacccctgacagccttagtgttctgtggtttttggtcaagtaactgaagctctgagctccagtttactgacttacatagactg-gcccg-tacttcccctctt-gctgggttcttttgatgatgaaaGTGCCTTTACTTGCTATGACACTTCAGAGGTGT
i proCoq1.NW_012148396v1    I 263 I 238
s canFam3.chr3               59930039 223 -  91889043 -----------TCCCTGCCTGTtgtggtgttggtgagaagagaacaagcttgggagttaggccttttcccaaattctacttctcatagcctcagagttgtgtgatc-ctggtcaaataattgagcctcagagtttcagtttactgtccctcaga-actagacctgttaatacccctcttaactgtctgcttttcagggtGAAAATAACTTTAGCTGCTATGTCATTGTAGGGATAA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116205283 671 + 116334831 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=167837.000000
s hg38.chr15_KI270851v1_alt    149190 18 +    263054 AAGATAGGAATGTGAGAT
s panTro5.chr15              73721821 18 -  83230942 AAGATAGGAATGTGAGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74025412 18 -  99763055 AAGATAGGAATGTGAGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        74222 18 -    281578 AAGATAGGAATGTGATAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70931818 14 + 121039945 AAGATAGGAATGTG----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164235771 18 - 169600520 GAGATAGGAATGTGAGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165556583 18 - 171882078 AAGATAGGAATGTGAGAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       402041 18 +   2379783 AAGATAGGAATGTGAGAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       371082 18 +   4116138 AAGATAGGAATGTGAGAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53803024 18 +  58131712 AAGATAGGAATGTGAGAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       418964 18 -   3636681 AAGATAGGAATGTGAGAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       398397 18 -   4457520 AAGATAGGAATGTGAGAT
i colAng1.NW_012115278v1    C 0 M 931
s calJac3.chr3               55213214 18 + 190850796 AAGATAGGAATGTGAGAC
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       292999 18 -   2086007 AAGATAGGAATGTGAGAC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       359201 18 +   3831555 AAGATAGGAATGTGAGAC
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59930262 18 -  91889043 AAACTAAGACTGTGAGAG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116205283 671 + 116334831 I
e proCoq1.NW_012148396v1     13433005 238 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=1342277.000000
s hg38.chr15_KI270851v1_alt    149208 205 +    263054 TGGAAAAGATTGGAAAAGAGTTCTTAGCCCAAATAAC--CTAATTAGAAGCTTCTGGGATCTGAACC-AAAAAAGTCA---AAAGTTGAAA-------------------AGCTACTGGGCAC--GTTTAGGTAAGTCAGCTACTAATAAA---AAGCTAATTGGAGACAGTTGTAGAAATAAATACTCTCACTTTACAAATGGAAAGTCCCATTCATttttttctttttctttc
s panTro5.chr15              73721839 205 -  83230942 TGGAAAAGATTGGAAAAGAGTTCTCAGCCCAAATAAC--CTAATTAGAAGCTTCTGGGATCTGAACC-AAAAAAGTCA---AAAGTTGAAA-------------------ATCTACTGGGCAC--GTTTAGGTAAGTCAGTTACTAATAAA---AAGCTAATTGGAGACAGTTGTAGAAATAAATACTCTCACTTTACAAATGGAAAGTCCCATTCATTTTtttctttttctttc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74025430 205 -  99763055 TGGAAAAGATTGGAAAAGAGTTCTCAGCCCAAATAAC--CTAATTAGAAGCTTCTGGGATCTGAACC-AAAAAAGTCA---AAAGTTGAAA-------------------ATCTACTGGGCAC--GTTTAGGTAAGTCAGCTACTAATAAA---AAGCTAATTGGAGACAGTTGTAGAAATAAATACTCTCACTTTACAAATGGAAAGTCCCATTCATTTTTttctttttttttc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        74240 205 -    281578 TGGAAAAGATTGGAAAAGAGTTCTCAGCCCAAATAAC--CTAATTAGAAGCTTCTGGGATCTGAACC-AAAAAAGTCA---AAAGTTGAAA-------------------AGCTACTGGGCAC--GTTTAGGTAAGTCAGCTACTAATAAA---AAGCTAATTGGAGACAGTTGTAGAAATAAATACTGTCACTGTACAAATGGAAAGTCCCATTCATTTTTttctttttctttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70931832 180 + 121039945 ------AGATTGGAAAAGAGTTCTCAGCCCAAATAAC--CTAATTAGAAGCATCTGGGATCTGAACC-AAAAAAGTCA---AAAGTTGAAA-------------------ACCTACTGGGCAC--GTTTAGGTAAGTCAGCTACTAATAAA---AAGCTAATTGGAGACAGCTGTAGAAATAAATACTCTCACTTTACAAATGGAAAGTCCCAttc-------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164235789 197 - 169600520 -----CAAATTAGAAAAGAGTTCTCAGCCCAAATAAC--CTAATTAGAAGCATCTGGGATCTGAATC-AAAAAAGGCA---AAAGTTGAAA-------------------ACCTACTGGGCAC--GTTTAGGTAAGTCAACTACTAATGAA---AAGCTAATTGGAGACAGTTGTAGAAATAAATACTCTCACTGTACAAATTGAAAGTCCCAttctttttttttctttttc---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165556601 197 - 171882078 -----CAAATTAGAAAAGAGTTCTCAGCCCAAATAAC--CTAATTAGAAGCATCTGGGATCTGAATC-AAAAAAGGCA---AAAGTTGAAA-------------------ACCTACTGGGCAC--GTTTAGGTAAGTCAACTACTAATGAA---AAGCTAATTGGAGACAGTTGTAGAAATAAATACTCTCACTGTACAAATTGAAAGTCCCAttctttttttttctttttc---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       402059 197 +   2379783 -----CAAATTAGAAAAGAGTTCTCAGCCCAAATAAC--CTAATTAGAAGCATCTGGGATCTGAATC-AAAAAAGGCA---AAAGTTGAAA-------------------ACCTACTGGGCAC--GTTTAGGTAAGTCAACTACTAATGAA---AAGCTAATTGGAGACAGTTGTAGAAATAAATACTCTCACTGTACAAATTGAAAGTCCCAttctttttttttctttttc---
i macNem1.NW_012011934v1    C 0 I 1
s cerAty1.NW_012001462v1       371100 197 +   4116138 -----CAAATTAGAAAAGAGTTCTCAGCCCAAATAAC--CTAATTAGAAGCATCTGGGATCTGAATC-AAAAAAGGCA---AAAGTTGAAA-------------------ACCTACTGGGCAC--GTTTAGGTAAGTCAACTACTAATGAA---AAGCTAATTGGAGACCGTTGTAGAAATAAATACTCTCACTGTACAAATTGAAAGTCCCAttctttttttttgtttttc---
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53803042 197 +  58131712 -----CAAATTAGAAAAGAGTTCTCAGCCCAAATAAC--CTAATTAGAAGCATCTGGGATCTGAATC-AAAAAAGGCA---AAAGTTGAAA-------------------ACCTACTGGGCAC--GTTTAGGTAAGTCAACTACTAATAAA---AAGCTAATTGGAGACAGTTGTAGAAATAAATACTCTCACTGTACAAATTGAAAGTCCCAttctttttttttctttttc---
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       418982 197 -   3636681 -----CAAATTAGAAAAGAGTTCTCAGCCCAAATAAC--CTAATTAGAAGCATCTGGGATCTGAATC-TAAAAAGGCA---AAAGTTGAAA-------------------ACCTACTGGGCAC--GTTTAGGTAAGTCAACTACTAATGAA---AAGCTAATTGGAGACAGTTGTAGAAATAAATACTCTCACTGTACAAATTGGAAGTCCCAttctttttttttctttttc---
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr3               55213232 187 + 190850796 -----CAAATTGGAAAAGGGTTCTCGG-CCAAATAATTACTCAATAGACACGTCTGTGATCTAAACCAAAAAAAGTCA---AAAGTTGAAA-------------------ACCTACTGGGCAC--GTTTAGGTAAGTCAGCTACTAATGAAAACAAGCTAATTAGGGACAGTTGTACAAATAACTACTCTTACTTTACAAATTGAAAATCCTGttct------------------
i calJac3.chr3              C 0 I 1
s cebCap1.NW_016107707v1       293017 197 -   2086007 -----CAAATTGGAAAAGGATTCTCAG-CCAAATAATTACTAATTAGACACATCTGTGATCTGAACCAAAAAAAGTCA---AAAGTTGAAA-------------------ACCTACTGGGCAC--GTTTAGGTAGGTCAGCTACTAATGAAAACAAGCTAATTAGAGACAGTTGTTCAAATAACTACTCTCACTTTACAAATTGAAAATCCTGttcttcttcttctc--------
i cebCap1.NW_016107707v1    C 0 I 2
s aotNan1.NW_018503298v1       359219 190 +   3831555 -----CAAATTGG-AAAGGGTTCTCAG-CCAAATAATTACTAATTAGACACATCTGTGATCTGAACCAAAAAAAGTCA---AAAGTTGAAA-------------------ACCTACTGGGCAT--GTTTAGGTAAGTCAGCTACTAATGAAAACAAGCTAATTAGAGACAGTTGTACAAATAACTACTCTCACTTTACAAATTGAAAATCCTGttcttttt--------------
i aotNan1.NW_018503298v1    C 0 I 1
s canFam3.chr3               59930280 175 -  91889043 -----CAAATTGGAAAAGGAATGTAAGACCAAGCAAA--CTAATGAGAAGTATTTGGATTCTGTACT-AAAACAGTCAAAGAAAATTTAAATCCTGTCATCTGTATCATCACCCTTTGGTTACTTTTTTATGTAAGTTAGCTGTTAAGGAAGACAAGCTAATAATAGGTAGTTGTACAGATAG----------------------------------------------------
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116205283 671 + 116334831 I
e proCoq1.NW_012148396v1     13433005 238 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e colAng1.NW_012115278v1       398415 931 -   4457520 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=129523.000000
s hg38.chr15_KI270851v1_alt    149413 26 +    263054 ttt---tt--tttttttta-aa-tgaatagggt
s panTro5.chr15              73722044 28 -  83230942 tttc-ttt--ttttttttt-aa-tgaatagggt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74025635 29 -  99763055 tttcttct--ttttttttt-aa-tgaatagggt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        74445 26 -    281578 ttt---tt--tttcttttt-ta-tgaatagggt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932012 26 + 121039945 ttt---tt--tttttttat-ta-tgaatagagt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164235986 21 - 169600520 ----------ttttttttt-aa-tgaatagggt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165556798 21 - 171882078 ----------ttttttttt-aa-tgaatagggt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       402257 21 +   2379783 ----------ttttttttt-aa-tgaatagggt
i macNem1.NW_012011934v1    I 1 C 0
s cerAty1.NW_012001462v1       371297 21 +   4116138 ----------ttttttttt-aa-tgaatagggt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53803239 21 +  58131712 ----------ttttttttt-aa-tgaatagggt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       419179 22 -   3636681 ----------tttttttttaaa-tgaatagggt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       399367 26 -   4457520 ------ttttttttttttt-aattgaatagggt
i colAng1.NW_012115278v1    M 931 C 0
s calJac3.chr3               55213420 24 + 190850796 ttt-------ttttttttt-aa-gggatagggt
i calJac3.chr3              I 1 C 0
s cebCap1.NW_016107707v1       293216 24 -   2086007 ttt-------ttttttttt-ca-ggaatagggt
i cebCap1.NW_016107707v1    I 2 C 0
s aotNan1.NW_018503298v1       359410 24 +   3831555 ttt-------tttttttta-aa-ggaatagggt
i aotNan1.NW_018503298v1    I 1 C 0
s canFam3.chr3               59930455 17 -  91889043 --------------TCTTA-AA-TTGACAAGTT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116205283 671 + 116334831 I
e proCoq1.NW_012148396v1     13433005 238 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=1131643.000000
s hg38.chr15_KI270851v1_alt    149439 129 +    263054 ctctgtcacccaggttggaatgctgtggtgtgatcagagcttactgtaacctcaaactcctgggtgcaggtgaccgtcctgctgtagcctcctgagtagctgggattacaggcacgtgccatgcacttg
s panTro5.chr15              73722072 129 -  83230942 ctctgtcacccaggttggaatgctgtggtgtgatcagagcttactgtaacctcaaactcctgggtgcaggtgaccctcctgctgtagcctcctgagtagctgggattacaggcatgtgccatgcacttg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74025664 129 -  99763055 ctctgtcacccaggttggaatgctgtggtgtgatcagagcttactgtaacctcaaactcctgggtgcaggtgaccctcctgctgtagcctcctgagtagctgggattacaggcacgtgccatgcacttg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        74471 129 -    281578 ctctgtcacccaggttggaatgctgtggtgtgatcagagcttactgtaacctcaaactcctgggtgcaggtgaccctcctgctgtagcctcctgagcagctgggattacaggcacgtgccatgcacttg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932038 129 + 121039945 ctctgtcacccaggttggagtgctgtgttgtgatcagagctcactgaaacctcaaactcctgggcgcaggtgaccctcctgctgtagcctcctgagtagctgggattacaggcgcgtgccatgcacttg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164236007 129 - 169600520 ctctgtcacccaggttggagtgctgtggtatgatcagagctcactgtaacctcaaactcctgggcgcaggtaaccctcctgctgtagcctcctgagtagctgggattataggtgtgtgccgtgcacttg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165556819 129 - 171882078 ctctgtcacccaggttggagtgctgtggtatgatcagagctcactgtaacctcaaactcctgggcgcaggtaaccctcctgctgtagcctcctgagtagctgggattataggtgtgtgccgtgcacttg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       402278 129 +   2379783 ctctgtcacccaggttggagtgctgtggtatgatcagagctcactgtaacctcaaactcctgggcgcaggtaaccctcctgctgtagcttcctgagtagctggggttataggtgcgtgccacgcacttg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       371318 129 +   4116138 ctctgtcacccaggttggagtgctgtggtatgatcagagctcactgtaacctcaaactcctgggtgcaggtaaccctcctgctgtagcctcctgagtagctgggattacaggtgcgtgccatgcacttg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53803260 129 +  58131712 ctctgtcacccaggttggagtgctgtggtatgatcagagctcactgtaacctcaaactcctgggcgcaggtaaccctcctgctgtagcctcctgagtagctgggattacaggtgcatgccatgcacttg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       419201 129 -   3636681 ctctgtcacccaggttggagtgctgtggtatgatcagagctcactgtaacctcaaactcctgggcacaggtaaccctcctgctgtagcctcctgagtagctgggattacaggtgtgtgccatgcacttg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       399393 129 -   4457520 ctttgtcacccaggttggagtgctgtggtatgatcagagctcactgtaacctcaagctcctgggcgcaggtaaccctcctgctgtagcctcctgagtagctgggattacaggtgcatgccatgcacttg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55213444 129 + 190850796 ctctgccacccaggctggagtgctcttgtgtgatcagagctcaccgtaaccttaaactcctgggctcagatgatccttctgccttagcctcctgagtagctggggttacaggcacctgccattcacttg
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       293240 129 -   2086007 ctgtgtcacccaggctggagtgctgtagtgtgatcagagctcactgtaaccttaaattcctgggctcagatgattcttctgccctagcctcctgagtagctggggttacaggcacctgccattcacttg
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       359434 129 +   3831555 ctctgtcacccaggctggagtgctgtagtgtgatcagagctcactgtaaccttaaactcctgggctcagatgatccttctgccttaaccttctgagtagctggggttacaggcacctgccattcacttg
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116205283 671 + 116334831 I
e proCoq1.NW_012148396v1     13433005 238 +  16154928 I
e canFam3.chr3               59930472   0 -  91889043 C
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=1380755.000000
s hg38.chr15_KI270851v1_alt    149568 163 +    263054 ggtaatttttacat-ttctgtagagacacgg-tcttaccatgttgcccaggctgatcttgaaatcttggcctcaagcagttcttctgtcttggcctcccaaagctctgggattacggcgtgggccaccacgccctgccTGTAGTCTCCATTCTTCTCAGTGCCAC
s panTro5.chr15              73722201 163 -  83230942 ggtaatttttacat-ttctgtagagacacgg-tcttaccatgttgcccaggctgatcttgaacccttggcctcaagcagttcttctgtcttggcctcccaaagctctgggattacggcgtgggccaccatgccctgccTGTAGTCTCCATTCTTCTCAGTGCCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74025793 163 -  99763055 ggtaatttttacat-ttctgtagagacacgg-tcttaccatgttgcccaggctgatcttgaacccttggcctcaagcagttcttctgtcttggcctcccaaagctctgggattacggcgtgggccaccatgccctgccTGTAGTCTCCATTCTTCTCAGTGTCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        74600 163 -    281578 ggtaatttttacat-ttctatagagacacgg-tcttaccatgttacccaggctgatcttgaactcttggcctcaagcagttcttctgtcttggcctcccaaagctctgggattacggcgtgggccaccacgccctgccTGTAGTCTCCGTTCTTATCAGTGCCAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932167 163 + 121039945 gctaatttttacat-ttctgtagagacacgg-tcttaccatgttgcccaggctgatattgaactcttggactcaagcagttcttctgccttggcctctcaaagctctgggattacggcgtgagccaccatgccctgccTGTAGTCCCTGTTCTTATCAGTGCCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164236136 163 - 169600520 gctaatgtttacat-ttttgtagagacacgg-ttttaccacattgcccaggctgatcttgaactcttggcctcaagcagttcttctgccttggcctcccaaagctccgggattccagcgtgagccaccacgcccTGTCTATAGTCCCTGTTCTTGCCAGCGCCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165556948 163 - 171882078 gctaatttttacat-ttttgtagagacacgg-ttttaccacgttgcccaggctgatcttgaactcttggcctcaagcagttcttctgccttggcctcccaaagctccgggattccagcgtgagccaccacgcccTGTCTGTAGTCCCTGTTCTTACCAGCGCCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       402407 163 +   2379783 gctaatttttacat-ttttgtagagacacgg-ttttaccacgttgcccaggctgatcttgaactcttggcctcaagcagttcttctgccttggcctcccaaagctccgggattccagcgtgagccaccacgcccTGTCTATAGTCCCTGTTCTTACCAGTGCCAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       371447 163 +   4116138 gctaatttttacat-ttttgtagagatacgg-ttttaccacgttgcccaggctgatcttgaactcttggcctcaagcagttcttctgccttggcctcccaaagctctgggattccagcgtgagccaccacgccctgccTGTAGTCCCTGTTCTTACCAGTGCCAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53803389 164 +  58131712 gctaatttttacat-ttttgtagagacacggtttttaccacgttgcccaggctgatcttgaactcttggcctcaagcagttcttctgccttggcctcccaaagctctgggattacagcgtgagccaccacgccctgccTATAGTCCCTGTTCTTACCAGTGCCAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       419330 163 -   3636681 gctaatttttacat-ttttgtagagatacgg-ttttaccacgttgcccaggctgatcttgaactcttggcctcaagcagttcttctgccttggcctcccaaagctctgggattctagcgtgagccaccacgccctgccTATAGTCCCTGTTCTTACCAGTGCCCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       399522 163 -   4457520 gctaatttttacat-ttttgtagagacacgg-ttttaccacgttgcccagactgatcttgaactcttggcctcaagcagttcttctgccttggcctcccaaagctctgggattacagcgtgagccaccacgccctgccTATAGTCCCTGTTCTTACCAGTGCCAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55213573 164 + 190850796 gctaatttttacatggtttgtagagacttgg-tctcaccatgttgcccaggctgatcttgaactcttggcctcaagcagtccgtctgccttggcctcctaaagctctgggattacagcatgagccacctcactctgccTACAGTCCTTGTTCTTCTCAATGCCAC
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       293369 164 -   2086007 gctaatttttacatgttttgtagagacacgg-tctcaccatgctgcccaggctgatcttgaactcttgacctcaagcagtccgtctgccttggcctcctaaagctccgggattccagcatgagccacctcaccctgccTGCAGTCCTCGTTCTTATCAGTGCCAC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       359563 164 +   3831555 gctaatttttacatgttttgtggagacaggg-tctcaccatgttgcccaggctgatcttgaactcttggcctcaagcaatccgtctgccttggcctcctaaatctctaggattacagcatgagccacctcaccctgcTTACAGTCCTTGTTCTTATCAATGCCAC
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59930472 101 -  91889043 GGTGATTTTTAT-T-TCCTGTACAGGC-TGT-TCTTACAATGCTGT---GATTGTTTTCAATTTCCTGGC---------TTTTT-------------------CTTTGGGATT------------------------CTGTGCT-----TTCCTTCCAGTGCCCT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116205283 671 + 116334831 I
e proCoq1.NW_012148396v1     13433005 238 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=290691.000000
s hg38.chr15_KI270851v1_alt    149731 29 +    263054 GGCTGTCTTCCAGTTGTT-CCCAGGCTGCT
s panTro5.chr15              73722364 29 -  83230942 GGCTGTCTTCCAGTTGTT-CCCAGGCTGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74025956 29 -  99763055 GGCTGTCTTCCAGTTGTT-CCCAGGCTGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        74763 29 -    281578 GGCTGTCTTCCAGTTGTT-CCCAGGCTGCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932330 29 + 121039945 GGCTGTCTTCCAGTTGTT-CCCAGGCTGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164236299 29 - 169600520 GGCTGTCTTCCAGTTGTT-CCCAGGCTGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165557111 29 - 171882078 GGCTGTCTTCCAGTTGTT-CCCAGGCTGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       402570 29 +   2379783 GGCTGTCTTCCAGTTGTT-CCCAGGCTGCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       371610 29 +   4116138 GGCTGTCTTCCAGTTGTT-CCCAGGCTGCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53803553 30 +  58131712 GGCTGTCTTCCAGTTGTTAACCAGGCTGCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       419493 29 -   3636681 GGCTGTCTTCCAGTTGTT-CCCAGGCTGCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       399685 29 -   4457520 AGCTGTCTTCCAGTTGTT-CCCAGGCTGCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55213737 29 + 190850796 GGCTGTCTTCCAGTTGTT-CCTAGGCTGCT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       293533 29 -   2086007 AGCTGTCTTCCGGTTGTT-CCTAGGCTGCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       359727 29 +   3831555 GGCTGTCTTCCAGTTGTT-CCTTGGCTGCT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13433243 29 +  16154928 GGCTGTTTTCCAGTTGTT-CCCAGGCTGCT
i proCoq1.NW_012148396v1    I 238 I 93
s canFam3.chr3               59930573  9 -  91889043 GGAATTCTT---------------------
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116205283 671 + 116334831 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=776671.000000
s hg38.chr15_KI270851v1_alt    149760 93 +    263054 GC-TTCCTCAGTCAGGATCCTGTACTGTTTGTGATCTGGAGAGCTCTTCTCCTGGGCTTCACTTTTGCTTGTTCAGAGTCTAACTCTCTGGAGA
s panTro5.chr15              73722393 93 -  83230942 GC-TTCCTCAGTCAGGATCCTGTACTGTCTGTGATCTGGAGAGCTCTTCTCCTGGGCTTCACTTTTGCTTGTTCACAGTCTAACTCTCTGGAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74025985 93 -  99763055 GC-TTCCTCAGTCAGGATCCTGTACTGTCTGTGATCTGGAGAGCTCTTCTCCTGGGCTTCACTTTTGCTTGTTCACAGTCTAACTCTCTGGAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        74792 93 -    281578 GC-TTCCTCAGTCAGGATCCTGTACTGTCTGTGATCTGGAGAGCTCTTCTCCTGGGCTTCACTTTTGCTTGTTCACAGTCTAACTCTCTGGAGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932359 93 + 121039945 GC-TTCCTCAGTCAGGATCCTGTACTGTCTGTGATCTGGAGAGCTCTTCTCCTGGGCTTCACTTTTGCTTGTTCACAGTCTAACTCTTTGGAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164236328 92 - 169600520 GC-TTCCTCAG-CAGGATCCTGTACCGTCTGTGCTCTGGAGAGCTCTTCTCCTGGGCTTCACTTTTGCTTGTTCACAGTCTGACTCTTTGGAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165557140 93 - 171882078 GC-TTCCTCAGTCAGGATCCTGTACCGTCTGTGGTCTGGAGAGCTCTTCTCCTGGGCTTCACTTTTGCTTGTTCACAGTCTAACTCTTTGGAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       402599 93 +   2379783 GC-TTCCTCAGTCAGGATCCTGTACCGTCTGTGGTCTGGAGAGCTCTTCTCCTGGGCTTCACTTTTGCTTGTTCACAGTCTAACTCTTTGGAGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       371639 93 +   4116138 GC-TTCCTCAGTCAGGATCCTGTACCGTCTGTGGTCTGGAGAGCTCTTCTCCTGGGCTTCACTTTTGCTTGTTCACAGTCTAACTCTTTGGAGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53803583 90 +  58131712 GC-TTCCTCAGTCAGGATCCTGTACCGTCTGTGGTCTGGAGAGCTCTT---CTGGGCTTCACTTTTGCTTGTTCACAGTCTAACTCTTTGGAGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       419522 93 -   3636681 GC-TTCCTCAGTCAGGATCCTGTACCGTCTGTGGTCTGGAGAGCTCTTCTCCTGGGCTTCACTTTTGCTTGTTCACAGTCTAACTCTTTGGAGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       399714 93 -   4457520 GC-TTCCTCCGTCAGGATCCTGTACTGTCTGTGATCTGGAGAGCTCTTTTCCTGGGCTTCACTTTTGCTTGTCCACAGTCTGACTCTTTGGAGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55213766 90 + 190850796 GC-TTCCTCAGTCTGGAACCTGTACTCTCTGTG--CTGGAGAGCTCTTCTCCTGGG-CTTACTTCTGCCAGTCCACAGTCTAACTCTTTGGAGA
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       293562 93 -   2086007 GC-TTCCTCAGTCTGGATCCTGTGTTCTCTGTGATCTGGAGAGCTCTTCTCCTGGGCCTCACTTCTGCCAGTCCACAGTCTAACTCTTTGGAGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       359756 94 +   3831555 GCAATCCTCAGTCTGGATCCTGTACTCTCTGTAATCTGGAGGGCTCTTCTCTTGGGCCTCACTTCTGCCGGTCCACAGTCTAACTCTTTGGAGA
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59930582 39 -  91889043 -----------------TCCTGTA-------------------------------GGTTCACCTCT-----TTCATGCCCT--CTCTTTCATGC
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116205283 671 + 116334831 I
e proCoq1.NW_012148396v1     13433272 93 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=479247.000000
s hg38.chr15_KI270851v1_alt    149853 41 +    263054 CCTCCTCCAGTGAGGCTTGCTTT-ATTGCCTTAGTAATGTTC
s panTro5.chr15              73722486 41 -  83230942 CCTCCTCCAGTGAGGCTTGCTTT-ATTGCCTTAGTAATGTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026078 41 -  99763055 CCTCCTCCAGTGAGGCTTGCTTT-ATTGCCTTAGTAATGTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        74885 41 -    281578 CCTCCTCCAGTGAGGCTTGCTTT-ATTGCCTTAGTAATGTTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932452 41 + 121039945 CCTCCTCCAGTGAGGCTTGCTTT-ATTGCCTTAGTAATGTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164236420 42 - 169600520 CCTCCTCCAGTGAGGCTTGCTTTAATTGCCTTAGAGATGTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165557233 42 - 171882078 CCTCCTCCAGTGAGGCTTGCTTTAATTGCCTTAGAGATGTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       402692 42 +   2379783 CGTCCTCCAGTGAGGCTTGCTTTAATTGCCTTAGAGATGTTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       371732 42 +   4116138 TCTCCTCCAGTGAGGCTTGCTTTAATTGCCTTAGAGATGTTC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53803673 42 +  58131712 CCTCCTCCAGTGAGGCTTGCTTTAATTGCCTTAGTGATGTTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       419615 42 -   3636681 CCTCCTCCAGTGAGGCTTGCTTTAATTGCCTTAGAGATGTTC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       399807 42 -   4457520 CCTCCTCCAGTGAGGCTTGCTTTAATTGCCTTAGTGATGTTC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55213856 41 + 190850796 CCTCTTTCAGTGAGGCTTGCTTT-ATTGTCTTAGTGATGTTC
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       293655 41 -   2086007 CCTCTTCCAGTGAGGCTTGCTTT-AGTGCCTTAGTGATGTTC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       359850 41 +   3831555 CCTCTTCCAGTGAGGCTTGCTTT-ATTGCCTTAGTGATGTTC
i aotNan1.NW_018503298v1    C 0 I 344
s micMur3.chr9              116205954 41 + 116334831 CCTTCTCCAGTGATGCTTGCTTT-ATTGCCTTAGCAATGTTC
i micMur3.chr9              I 671 C 0
s proCoq1.NW_012148396v1     13433365 41 +  16154928 CCTCCTCCAGTGAAGCTTGCTTT-ATTTCCTTAGCAATGTTC
i proCoq1.NW_012148396v1    I 93 C 0
s canFam3.chr3               59930621 39 -  91889043 CTTTCTCCAGAGAGGGTTGCTTT-GTTGCCTTAGT--TCCTC
i canFam3.chr3              C 0 C 0
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=13600.000000
s hg38.chr15_KI270851v1_alt    149894 1 +    263054 C
s panTro5.chr15              73722527 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026119 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        74926 1 -    281578 C
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932493 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164236462 1 - 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165557275 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       402734 1 +   2379783 C
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       371774 1 +   4116138 C
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53803715 1 +  58131712 C
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       419657 1 -   3636681 C
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       399849 1 -   4457520 C
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55213897 1 + 190850796 C
i calJac3.chr3              C 0 I 13
s cebCap1.NW_016107707v1       293696 1 -   2086007 C
i cebCap1.NW_016107707v1    C 0 I 663
s micMur3.chr9              116205995 1 + 116334831 C
i micMur3.chr9              C 0 I 80
s proCoq1.NW_012148396v1     13433406 1 +  16154928 C
i proCoq1.NW_012148396v1    C 0 I 226
s canFam3.chr3               59930660 1 -  91889043 C
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503298v1       359891 344 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=95912.000000
s hg38.chr15_KI270851v1_alt    149895 13 +    263054 ---------ACCTTTAAGGTGC
s panTro5.chr15              73722528 13 -  83230942 ---------ACCTTTAAGGTGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026120 13 -  99763055 ---------ACCTTTAAGGTGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        74927 13 -    281578 ---------ACCTTTAAGGTGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932494 13 + 121039945 ---------ACCTTTAAGGTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164236463 13 - 169600520 ---------ACCTTTAAGGTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165557276 13 - 171882078 ---------ACCTTTAAGGTGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       402735 13 +   2379783 ---------ACCTTTAAGGTGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       371775 13 +   4116138 ---------ACCTTTAAGGTGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53803716 13 +  58131712 ---------ACCTTTAAGGTGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       419658 13 -   3636681 ---------ACCTTTAAGGTGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       399850 13 -   4457520 ---------ATCTTTAAGGTGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55213911 13 + 190850796 ---------TTTTTTAAGATGC
i calJac3.chr3              I 13 C 0
s canFam3.chr3               59930661 22 -  91889043 TTCCTTGAATCCTTTAAGATGC
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116205996 80 + 116334831 I
e proCoq1.NW_012148396v1     13433407 226 +  16154928 I
e aotNan1.NW_018503298v1       359891 344 +   3831555 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e cebCap1.NW_016107707v1       293697 663 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=108096.000000
s hg38.chr15_KI270851v1_alt    149908 14 +    263054 -----CCAAATAGTTTTTT
s panTro5.chr15              73722541 14 -  83230942 -----CCAAATTGTTTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026133 14 -  99763055 -----CCAAATTGTTTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        74940 14 -    281578 -----CCAAATTGTTTTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932507 14 + 121039945 -----CCAAATTGTTTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164236476 14 - 169600520 -----CCAAGTTGGTTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165557289 14 - 171882078 -----CCAAGTTGGTTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       402748 14 +   2379783 -----CCAAGTTGGTTTTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       371788 14 +   4116138 -----CCAAGTTGTTTTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53803729 14 +  58131712 -----CCAAGTTGTTTTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       419671 14 -   3636681 -----CCAAGTTGTTTTTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       399863 14 -   4457520 -----CCAAGTTGTTTTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55213924 14 + 190850796 -----CCAAATTGTCtttt
i calJac3.chr3              C 0 I 306
s cebCap1.NW_016107707v1       294360 14 -   2086007 -----CCAAATTGTTTTTA
i cebCap1.NW_016107707v1    I 663 C 0
s aotNan1.NW_018503298v1       360235 14 +   3831555 -----CCAAATTGTTTTTA
i aotNan1.NW_018503298v1    I 344 C 0
s canFam3.chr3               59930683 17 -  91889043 CCGGACCATTGTGCTTT--
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116205996 80 + 116334831 I
e proCoq1.NW_012148396v1     13433407 226 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=169139.000000
s hg38.chr15_KI270851v1_alt    149922 19 +    263054 GAATGGTGCTTAC--------------CATTTA
s panTro5.chr15              73722555 19 -  83230942 GAATGGTGCTTAC--------------CATTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026147 19 -  99763055 GAATGGTGCTTAC--------------CATTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        74954 19 -    281578 GAATGGTGCTTAC--------------CATTTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932521 19 + 121039945 GAATGGTGCTTAC--------------CATTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164236490 19 - 169600520 GAATGGTGCTTAC--------------CGTTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165557303 19 - 171882078 GAATGGTGCTTAC--------------CGTTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       402762 19 +   2379783 GAATGGTGCTTAC--------------CGTTCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       371802 19 +   4116138 GAATGGTGCTTAC--------------TGTTCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53803743 19 +  58131712 GAATGGTGCTTAC--------------CATTCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       419685 19 -   3636681 GAATGGTGCTTAC--------------CGTTCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       399877 19 -   4457520 GAATGGTGCTTAC--------------CATTCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55214244 19 + 190850796 AAATGGTGCCTAC--------------CATTCA
i calJac3.chr3              I 306 C 0
s cebCap1.NW_016107707v1       294374 19 -   2086007 AAATGGTGCCTAC--------------CATTCA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       360249 19 +   3831555 AAATGGTGTCTAC--------------CATTCA
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59930700 33 -  91889043 AAATGGTGGTCACTCAGGTCCATGGCTCATTTA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116205996 80 + 116334831 I
e proCoq1.NW_012148396v1     13433407 226 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=860611.000000
s hg38.chr15_KI270851v1_alt    149941 82 +    263054 ----TTTGG----GTCATCAGTTCCTAGGAGGCTTCCACAGTGCATGTCCTTCCAGGAGTCCAGTGTCTACCTTCCAAAAAAGAATTCCT
s panTro5.chr15              73722574 82 -  83230942 ----TTTGG----GTCATCAGTTCCTAGGAGGCTTCCACAGTGCATGTCCTTCCAGGAGTCCAGTGTCTACCTTCCAAAAAAGAATTCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026166 82 -  99763055 ----TTTGG----GTCATCAGTTCCTAGGAGGCTTCCACAGTGCATGTCCTTCCAGGAGTCCAGTGTCTACCTTCCAAAAAAGAATTCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        74973 82 -    281578 ----TGTGG----GTAATCAGTTCCTAGGAGGCTTCCACAGTGCATGTCCTTCCAGGAGTCCAGTGTCTACCTTCCAAAAAAGAATTCCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932540 82 + 121039945 ----TTTGG----GTCATCAGTTCCTAGGAGGCTTCCACAGTGCATGTTCCGCCAGGAGTCCAGTCTCCACCTTCCAAAAAAGAATTCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164236509 82 - 169600520 ----TTTGG----ATCATCAGTTCCTAGGAGGCTTCCACAGTGCATGTCCCTCCAGGAGTCCAGTCTCCACCTTCCAGAAAAGAATTCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165557322 82 - 171882078 ----TTTGG----ATCATCAGTTCCTAGGAGGCTTCCACAGTGCATGTCCCTCCAGGAGTCCAGTCTCCACCTTCCAGAAAAGAATTCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       402781 82 +   2379783 ----TTTGG----ATCATCAGTTCCTAGGAGGCTTCCACAGTGCATGTCCCTCCAGGAGTCCAGTCTCCACCTTCCAGAAAAGAATTCCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       371821 82 +   4116138 ----TTTGG----ATCATCAGTTCCTAGGAGGCTTCCACAGTGCATGTCCCTCCAGGAGTCCAGTCTCCACCTTCCAGAAAAGAATTCCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53803762 82 +  58131712 ----TTTGG----ATCATCAGTTCCTAGGAGGCTTCCGCAGTGCATGTCCCTCCAGGAGTCCAGTCTCCACCTTCCAGAAAAGAATTCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       419704 82 -   3636681 ----TTTGG----ATCATCAGTTCCTAGGAGGCTTCCACAGTGCATGTCCCTCCAGGAGTCCAGTCTCCACCTTCCAGAAAAGAATTCCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       399896 86 -   4457520 ----TTTAGATCAATCATCAGTTCCTAGGAGGCTCCCACAGTGCATGTCCCTCCAGGAGTCCAGTCTCCACCTTCCAGAAAAGAATTCCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55214263 82 + 190850796 ----TTTGG----GTCATCAGTTCCTAGGAGGCTTCCACGGTGTATGTCCCTCCAGTAGTCAAGTCTCCACCTTCCAAAAAAGAAATCCT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       294393 82 -   2086007 ----TTTGG----GTCATCAGTTCCTAGGAGGCTTCCATGGTGTATGTCCCTCCAGGAGTCTAGTCTCCACCTTCTAAAAAAGAAATCCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       360268 82 +   3831555 ----TTTGG----GTCATCAGTTCCCAAGAGGCTTCCACGGTGTATGTCCCTTCAGTAGTCCAGTCTTCAGCTTCCAAAAAAGAAATCCT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116206076 82 + 116334831 ----TTTGG----GACATCAGTTCCTAGGAAGTGTCTATAGTATGTGTCCCTCCAGAAGTCCAGTCTCCACTTTCCAAAAAGGAATTCCT
i micMur3.chr9              I 80 I 139
s canFam3.chr3               59930733 84 -  91889043 CATCCTTAT----GTCCTCAGTTCATATGAGGCTTCTATAGTATGTGTCCCTCCAGATACCCAGTCTACACTTTCCACACAGGAGTTC--
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13433407 226 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=636250.000000
s hg38.chr15_KI270851v1_alt    150023 76 +    263054 TGTTACTCAGAAGGACAAGGTCTGGCCTATCCTCTTCCTTCCCAGTGCTACCCAGGTAATAATCGAAAGGTGGTGG
s panTro5.chr15              73722656 76 -  83230942 TGTCACTCAGAAGGACAAGGTCTGGCCTATCCTCTTCCTTCCCAGTGCTACCCAGGTAATAATCGAAAGGTGGTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026248 76 -  99763055 TGTCACTCAGAAGGACAAGGTCTGGCCTATCCTCTTCCTTCCCAGTGCTACCCAGGTAATAATCGAAAGGTGGTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75055 76 -    281578 TGTCACTCAGAAGGACAAGGTCTGGCCTATCCTCTTCCTTCCCAGTGCTACCCAGGTAATAATTGAAAGGTGGTGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932622 76 + 121039945 TGTCACTCAGAAGGACAAGGTCTGGCCTATCCTCTTCCTTCCCAATGCTACCCACATAATAATCGAAAGGTGGTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164236591 76 - 169600520 TGTCACTCACAAGGACAAGGTCTGTCCTATCCTCTTCCTTCCCAATGCTACCCAGGTAATAATTGAAAGGCTGTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165557404 76 - 171882078 TGTCACTCACAAGGACAAGGTCTGTCCTATCCTCTTCCTTCCCAATGCTACCCAGGTAATAATTGAAAGGCTGTGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       402863 76 +   2379783 TGTCACTCACAAGGACAAGGTCTGTCCTATCCTCTTCCTTCCCAATGCTACCCAGGTAATAATTGAAAGGCTGTGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       371903 76 +   4116138 TGTCACTCACAAGGACAAGGTCTGTCCTATCCTCTTCCTTCCCAGTGCTACCCAGGTAATAATTGAAAGGCTGTGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53803844 76 +  58131712 TGTCACTCACAAGGACAAGGTCTGTCCTATCCTCTTCCTTCCCAATGCTACCCAGGTAATAATTGAAAGGCTGTGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       419786 76 -   3636681 TGTCACTCACAAGGACAAGGTCTATCCTATCCTCTTCCTTCCCAATGCTACCCAGGTAATAATTGAAAGGCTGTGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       399982 76 -   4457520 TGTCTCTCACAAGGACAAGGTCTGTCCTATCCTCTTCCTTCCCAACGCTACCCAGGTAATAATTGAAAGGCTGTGG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55214345 76 + 190850796 TGTCACTCAGAAGGACAAGGTCTGCCCTATCCTTTTCCCTCCCAACACTACCCAGGTAATAATAGAAAGGCAGTGG
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       294475 73 -   2086007 TGTCACTCACAAGGACAAGGTCTGCCCTATCCTTTTCCCTCCCGACACTACCCAGG---TAATAGAAAGGCAGCGG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       360350 76 +   3831555 TGTCACTCACAAGGACAAGGTCTGCCCTATCCTTTTCCCTCCCAACACTACCCAGGTAATAATAGAAAGGCAGTAG
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59930817 29 -  91889043 ------------------------GCCTACTTTTCTTCCTCT-----------------------AGACATGGTAG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206158 139 + 116334831 I
e proCoq1.NW_012148396v1     13433407 226 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=553617.000000
s hg38.chr15_KI270851v1_alt    150099 51 +    263054 TAATTATTCTTGTTTCCATGTAAACTGGGCTTCCTCCTTGGCTTAGTCTTT
s panTro5.chr15              73722732 51 -  83230942 TAATTATTCTTGTTTCCATGTAAACTGGGCTTCCTCCTTGGCTTAGTCTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026324 51 -  99763055 TAATTATTCTTGTTTCCATGTAAACTGGGCTTCCTCCTTGGCTTAGTCTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75131 51 -    281578 TAATTATTCTTGTTTCCATGTAAACTGGGCTTCCTCCTTGGCTTAGTCTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932698 51 + 121039945 TAATTATTCTTGTTTCCATGTAAACTGGGCTTCCTCCTTGGCTTAGTCTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164236667 51 - 169600520 TAATTATTCTTGTTTCCATGTAAACCGGGCTTCCTCTTTGGCTTAGTGTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165557480 51 - 171882078 TAATTATTCTTGTTTCCATGTAAACCGGGCTTCCTCTTTGGCTTAGTGTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       402939 51 +   2379783 TAATTATTCTTGTTTCCATGTAAACCGGGCTTCCTCTTTGGCTTAGTGTTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       371979 51 +   4116138 TAATTATTCTTGTTTCCATGTAAACCGGGCTTCCTCTTTGGCTTAGTGTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53803920 51 +  58131712 TAATTATTCTTGTTTCCATGTAAACCAGGCTTCCTCCTTGGCTTAGTGTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       419862 51 -   3636681 TAATTATTCTTGTTTCCATGTTAACCGGGCTTCCTCTTTGGCTTAGTGTTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       400058 51 -   4457520 TATTTATTCTTGTTTCCATGTAAACCGGGCTTCCTCCTTGGCTTAGTCTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55214421 51 + 190850796 TAATTATTCTGGTTTCCATGTAAATTGGGCTTCCTTTTTGGCTTAGTGTTT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       294548 51 -   2086007 TAATTATTCTTGTTTCCATGTAAATTGGGCTTCCTTTTTGGCTTAGTCTTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       360426 51 +   3831555 TAATTACTCTTATTGCCATGTAAATTGGGCTTCCTTTTTGGCTTAGTCTTT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13433633 51 +  16154928 TAATTGTTCTTGTTTCCATGTAAAAGGAGCTTCCTCCTTGGCTTAGTTTTT
i proCoq1.NW_012148396v1    I 226 I 21
s canFam3.chr3               59930846 51 -  91889043 TAACATTTCTTGTTTCCACATAAACTGGGTTTCTCCCTTGGCTTATTCTTA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206158 139 + 116334831 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=145803.000000
s hg38.chr15_KI270851v1_alt    150150 19 +    263054 AAATGTTCCATCTTTTGGC
s panTro5.chr15              73722783 19 -  83230942 AAATGTTCCATCTTTTGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026375 19 -  99763055 AAATGTTCCATCTTTTGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75182 19 -    281578 AAATGTTCCATCTTTTGGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932749 19 + 121039945 AAATGTTTCATCTTTTGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164236718 19 - 169600520 AAATGTTTCATCTTTTGGC
i rheMac8.chr7              C 0 I 337
s macFas5.chr7              165557531 19 - 171882078 AAATGTTTCATCTTTTGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       402990 19 +   2379783 AAATGTTTCATCTTTTGGC
i macNem1.NW_012011934v1    C 0 I 339
s cerAty1.NW_012001462v1       372030 19 +   4116138 AAATGTTTCATCTTTTGGC
i cerAty1.NW_012001462v1    C 0 I 320
s chlSab2.chr26              53803971 19 +  58131712 AAAAGTTTCATCTTTTGGC
i chlSab2.chr26             C 0 I 328
s manLeu1.NW_012102332v1       419913 19 -   3636681 AAATGTTTCATCTTTTGGC
i manLeu1.NW_012102332v1    C 0 I 331
s colAng1.NW_012115278v1       400109 19 -   4457520 AAATGTTTCATCTTTTGGC
i colAng1.NW_012115278v1    C 0 I 2
s calJac3.chr3               55214472 16 + 190850796 AAATGTT---TCTTTTGGC
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       294599 16 -   2086007 AAATGTT---TCATTTGGC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       360477 16 +   3831555 AAATGTT---TCTTTTGGC
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59930897 18 -  91889043 AAGTACTTCATGTTTGTT-
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206158 139 + 116334831 I
e proCoq1.NW_012148396v1     13433684 21 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=22826.000000
s hg38.chr15_KI270851v1_alt    150169 3 +    263054 TTT
s panTro5.chr15              73722802 3 -  83230942 TTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026394 2 -  99763055 -TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75201 3 -    281578 TCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932768 3 + 121039945 TTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164237074 3 - 169600520 ttt
i rheMac8.chr7              I 337 C 0
s macFas5.chr7              165557550 3 - 171882078 ttt
i macFas5.chr7              C 0 I 334
s macNem1.NW_012011934v1       403348 3 +   2379783 ttt
i macNem1.NW_012011934v1    I 339 C 0
s cerAty1.NW_012001462v1       372369 3 +   4116138 TTT
i cerAty1.NW_012001462v1    I 320 C 0
s chlSab2.chr26              53804318 3 +  58131712 ttt
i chlSab2.chr26             I 328 C 0
s manLeu1.NW_012102332v1       420263 3 -   3636681 ttt
i manLeu1.NW_012102332v1    I 331 C 0
s colAng1.NW_012115278v1       400130 3 -   4457520 TTT
i colAng1.NW_012115278v1    I 2 C 0
s calJac3.chr3               55214488 3 + 190850796 TTA
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       294615 3 -   2086007 ttt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       360493 3 +   3831555 TAT
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59930915 3 -  91889043 TTT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206158 139 + 116334831 I
e proCoq1.NW_012148396v1     13433684 21 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=146707.000000
s hg38.chr15_KI270851v1_alt    150172 19 +    263054 TTTTTTT------AAAATGGTACCT
s panTro5.chr15              73722805 19 -  83230942 TTTTTTA------AAAATGGTACCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026396 19 -  99763055 TTTTTTA------AAAATGGTACCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75204 19 -    281578 TTGTTTT------AAAATGGTACCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932771 19 + 121039945 TTTTTTT------TAAATGGTACCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164237077 19 - 169600520 ttttttt------tAAATGGTACTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165557887 19 - 171882078 TTTTTTT------TAAATGGTACCT
i macFas5.chr7              I 334 C 0
s macNem1.NW_012011934v1       403351 19 +   2379783 ttttttt------tAAATGGTACCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       372372 19 +   4116138 TTTTTTT------TAAATGGTACCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53804321 19 +  58131712 ttttttt------tAAATGGTACCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       420266 19 -   3636681 ttttttt------tAAATGGTACCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       400133 19 -   4457520 TTTTTTT------TAAATGGTACCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55214491 17 + 190850796 TTTTTTT--------AATGGTACGT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       294618 25 -   2086007 ttttttttttttttAAATGGTACCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       360496 19 +   3831555 TTTTTTT------TAAATGGTACCT
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59930918 13 -  91889043 CATTTTT------------GTAGCT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206158 139 + 116334831 I
e proCoq1.NW_012148396v1     13433684 21 +  16154928 I
e otoGar3.GL873689             351267 2771 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=35143.000000
s hg38.chr15_KI270851v1_alt    150191 4 +    263054 CTGT
s panTro5.chr15              73722824 4 -  83230942 CTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026415 4 -  99763055 CTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75223 4 -    281578 CTGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932790 4 + 121039945 CTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164237096 4 - 169600520 CTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165557906 4 - 171882078 CTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       403370 4 +   2379783 CTGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       372391 4 +   4116138 CTGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53804340 4 +  58131712 CTGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       420285 4 -   3636681 CTGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       400152 4 -   4457520 CTGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55214508 4 + 190850796 CTTT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       294643 4 -   2086007 CTGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       360515 4 +   3831555 CTGT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             354038 4 +   3845361 cTGG
i otoGar3.GL873689          I 2771 C 0
s canFam3.chr3               59930931 3 -  91889043 CTA-
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206158 139 + 116334831 I
e proCoq1.NW_012148396v1     13433684 21 +  16154928 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=77440.000000
s hg38.chr15_KI270851v1_alt    150195 6 +    263054 AACACT
s panTro5.chr15              73722828 6 -  83230942 AACACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026419 6 -  99763055 AACACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75227 6 -    281578 AACACT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932794 6 + 121039945 AACACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164237100 6 - 169600520 AACACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165557910 6 - 171882078 AACACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       403374 6 +   2379783 AACACT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       372395 6 +   4116138 AACACT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53804344 6 +  58131712 AACGCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       420289 6 -   3636681 AACACT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       400156 6 -   4457520 AACACT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55214512 6 + 190850796 AACACT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       294647 6 -   2086007 AACACT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       360519 6 +   3831555 AACACT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116206297 6 + 116334831 AACACC
i micMur3.chr9              I 139 C 0
s otoGar3.GL873689             354042 6 +   3845361 AACACC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59930934 6 -  91889043 AACACC
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13433684 21 +  16154928 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=3323129.000000
s hg38.chr15_KI270851v1_alt    150201 292 +    263054 AATGTTTCTCAATCTAGGCTGTACCGCAGAACACTGATGTGTGGAGCCCAGCCAGTCTG-GGGCGATCTTAGAGTGCTTTCAGGGCTG--GGCAGGGGtctcccctctctgcttgggtg-ttggcatcttctccagg--------------acatcacctacagtccatttgttgactactcccagatttgagtctc-tagccctgaacactctgctaagatctggatctatatttactgagggttg--------------------------------------------------------------------------------------------gtgga-------------------------------------------------gtggggaggagctccatgtttatgttcagtagttagtgcaaatcttagtggttaaaacg
s panTro5.chr15              73722834 292 -  83230942 AATGTTTCTCAATCTAGGGTGTACCGCAGAACACTGATGTGTGGAGCCCAGCCAGTCTG-GGGCGATCTTAGAGTGCTTTCAGGGCTG--GGCAGGGGtctcccctctctgcttgggtg-ttggcatcttctccagg--------------acatcatctacagtccatttgttgactactcccagatttgagtctc-tagccctgaacactctgctaagatctggatctatatttactgagggttg--------------------------------------------------------------------------------------------gtgga-------------------------------------------------gtggggaggagctccatgtttatgttcagtagttagtgcaaatcttagtggttaaaacg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026425 292 -  99763055 AATGTTTCTCAATCTAGGGTGTACCGCAGAACACTGATGTGTGGAGCCCAGCCAGTCTG-GGGCGATCTTAGAGTGCTTTCAGGGCTG--GGCAGGGGtctcccctctctgcttgggtg-ttggcatcttctccagg--------------acatcatctacagtccatttgttgactactcccagatttgagtctc-tagccctgaacactctgctaagatctggatctatatttactgagggttg--------------------------------------------------------------------------------------------gtgga-------------------------------------------------gtggggaggagctccatgtttatgttcagtagttagtgcaaatcttagtggttaaaacg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75233 292 -    281578 AATGTTTCTCAATCTAGGCTGTACCGCAGAACACTGATGTGTGGAGCCCAGCCAGTCTG-GGGCGATCTTAGAGTGCTTTCAGGGCTG--GGCAGGGGtctcccctctctgcttgggtg-ttggcatcttctccagg--------------acatcatctacagtccatttgttgactactcccagatttgagtctc-tagccctgaacactctgctaagatctggatctatatTTACTGAGGGTTG--------------------------------------------------------------------------------------------GTGGA-------------------------------------------------GTGGGGAGGAGCTCCATGTTTATGTTCAGTAGTTAGTGCAAATCTTAGTGGTTAAAACG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70932800 292 + 121039945 AGTGTTTCTCAATCTAGGCTGTACCGCAGAACACTAATGTGTGGAGCCCAGCCAGTCTG-GGGCGATCTCAGAGTGCTTTCAGGGCTG--GGCAGGGGTCTCCCTTCTCTGCTGGGGTG-TTGGCATCTTCTCCAGG--------------ACATCATCtacagtccatttgttgactactcccagatttgagtctc-tagccctgaacactctgctaagatctggatctgtatTTACTGAGGGTTG--------------------------------------------------------------------------------------------GTGGA-------------------------------------------------GTGGGGAGGAGCTCCATGTTTATGTTCAGTAGTTAGTGCAAATCTTAGTGGTTAAAACG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164237106 292 - 169600520 AATGTTTCTCAATCTAGGCTGTACCACACAACACTGATGTGTGGAGCCCAGCCAGTGTG-GGGCAATCTCAGAGTGCTTTCAGGGCTG--GCCAGTGGTCCACCCTCTCTGCTTGGGTG-TTGGCGTCTTCTCCAGG--------------ACATCATCTACAGTCCATTTGTGGACTACTCCCAGAGTTGAGTCTC-TAGCCCTGCTCCCTCTGCTAAGATGTGGATCTGTGTTTACTGAGGGTTG--------------------------------------------------------------------------------------------GTGGA-------------------------------------------------ATGGGGAGGAGCTCCACGTTTATGTTCAGTAGTCAGGGCAAATCTTAGTGGTTAAAACG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165557916 292 - 171882078 AATGTTTCTCAATCTAGGCTGTACCACACAACACTGATGTGTGGAGCCCAGCCAGTGTG-GGGCAATCTCAGAGTGCTTTCAGGACTG--GCCAGTGGTCCACCCTCTCTGCTTGGGTG-TTGGCGTCTTCTCCAGG--------------ACATCATCTACAGTCCATTTGTGGACTACTCCCAGAGTTGAGTCTC-TAGCCCTGCTCCCTCTGCTAAGATGTGGATCTGTGTTTACTGAGGGTTG--------------------------------------------------------------------------------------------GTGGA-------------------------------------------------ATGGGGAGGAGCTCCACGTTTATGTTCAGTAGTCAGGGCAAATCTTAGTGGTTAAAACG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       403380 292 +   2379783 AATGTTTCTCAATCTAGGCTGTACCACACAACACTGATGTGTGGAGCCCAGCCAGTGTG-GGGCAATCTCAGAGTGCTTTCAGGGCTG--GCCAGTGGTCCACCCTCTCTGCTTGGGTG-TTGGCGTCTTCTCCAGG--------------ACATCATCTACAGTCCATTTGTGGACTACTCCCAGAGTTGAGTCTC-TAGCCCTGCTCCCTCTGCTAAGATGTGGATCTGTGTTTACTGAGGGTTG--------------------------------------------------------------------------------------------GTGGA-------------------------------------------------ATGGGGAGGAGCTCCACGTTTATGTTCAGTAGTCAGGGCAAATCTTAGTGGTTAAAACG
i macNem1.NW_012011934v1    C 0 I 301
s cerAty1.NW_012001462v1       372401 292 +   4116138 AATGTTTCTCAATCTAGGCTGTACCACACAACACTGATGTGTGGAGCCCAGCCAGTGTG-GGGCAATCTCAGAGTGCTTTCAGGGCTG--GCCAGTGGTCCACCCTCTCTGCTTGGGTG-TTGGCGTCTTCTCCAGG--------------ACATCATCTACAGTCCATTTGTGGACTACTCCCAGAGTTGAGTCTC-TAGCCCTGCTCCCTCTGCTAAGATGTGGATCTGTGTTTACTGAGGGTTG--------------------------------------------------------------------------------------------GTGGA-------------------------------------------------ATGGGGAGGAGCTCCACGTTTATGTTCAGTAGTCAGGGCAAATCTTAGTGGTTAAAACG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53804350 292 +  58131712 AATGTTTCTCAATCTACGCTGTACCACACGACACTGATGTGTGGAGCCCAGCCAGTGTG-GGGCAATCTCAGAGTGCTTTCAGGGCTG--GCCAGTGGTCCACCCTCTCTGCTTGGGTG-TTGGCGTCTTCTCCAGA--------------ACATCATCTACAGTCCATTTGTGGACTACTCCCAGAGTTGAGTCTC-TAGCCCTGCTCCCTCTGCTAAGATGTGGATCTGTGTTTACTGAGGGTTG--------------------------------------------------------------------------------------------GTGGA-------------------------------------------------ATGGGGAGGAGCTCCACGTTTATGTTCAGTAGTCAGGGCAAATCTTAGTGGTTAAAACG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       420295 292 -   3636681 AATGTTTCTCAATCTAGGCTGTACCACACAACACTGATGTGTGGAGCCCAGCCAGTGTG-GGGCAATCTCAGAGTGCTTTCAGGGCTG--GCCAGTGGTCCACCCTCTCTGCTTGGGTG-TTGGCGTCTTCTCCAGG--------------ACATCATCTACAGTCCATTTGTGGACTATTCCCAGAGTTGAGTCTC-TAGCCCTGCTCCCTCTGCTAAGATGTGGATCTGTGTTTACTGAGGGTTG--------------------------------------------------------------------------------------------GTGGA-------------------------------------------------ATGGGGAGGAGCTCCACGTTTATGTTCAGTAGTCAGGGCAAATCTTAGTGGTTAAAACG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       400162 292 -   4457520 AATGTTTCTCAATCTAGGCTGTACCGCAGAACACTGATGTGTGGAGCCCAGCCAGTGTG-GGGCAATCTCAGAGTGCTTTCAGGGCTG--GCCAGTGGTCCACCCTCTCTGCTTGGGTG-TTGGCATCTTCCCCAGG--------------ACATCATCTACAGTCCGTTTGTTGACTGCGCCCAGATTTGAGTCTC-TAGCCCTGCTCACTCTGCTGAGATGTGGATCTGTATTTACCGAGGGTTG--------------------------------------------------------------------------------------------GTGGA-------------------------------------------------ATGGGGAGGAGCTCCATGTTTATGTTCAGTAGTTAGTGCAAATCTTAGTGGTTAAAACG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55214518 289 + 190850796 AATGTTTCTCAAGCTAGGCTGTACCCCAGAACAC---TGTGTGGAGCCCAGCCAGTCTA-GGGCAATCTCGGAGTGCTTTCAGGGCTG--GGCAGTGGTCTGCGTGCTCTGCTTCCGTG-TTGACATCTCTTCCAGG--------------GCAGCATCTGTAGTCCCTTTGTGGACTACTCTCAGATTTGAGTCTC-TAGCCCTGAATACTCTGCCAAGATCTGGATCTGTATTTACTGAGGGTGG--------------------------------------------------------------------------------------------GTGGG-------------------------------------------------GTGGGGAGAAGCTCCATGTTTATGTTCAGTATTTAGTGCATATCTTAGCGGTTAAAGCG
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       294653 291 -   2086007 AATGTTTCTGAACCTAGGCTGTAACCCAGAACACTGATGTGTGGAGCCCAGCCAGTCTG-GGGCAGTCTCGGAGTGCTTTTAGGGCTG--GGCGGTGGTCCGCGCTCTTCGCTTCGCTG-TTGACATCTCTTCCAGG--------------ACAGCATC-GTAGTCCCTTTGTGGACTGCTCTCAGATTTGAGTCTC-TAGACCTGAATACTCTGCCAAGATCTGGATCTGTATTTACTGAGAGTGC--------------------------------------------------------------------------------------------GTGGG-------------------------------------------------GTGGGGAGGAGCTCCATGTTTAAGTTCAGTATTTAGTGCATATCTTAGCAGTTAAAGTG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       360525 292 +   3831555 AATGTTTCTCAACCTAGGGTGTACCCCAGAACACTGATGTGTGGAGCCCAGCCAGTCTG-GGGCAATCTCAGAGTGCTTTCAGGGCTG--GGCAGTGGTCCGCGCTGTCTGCTTCGGTG-TTGACATCTTTTCCAGG--------------ACAGCATCTGTAGTCCCTTTGTGGACTACTCTCAGATTTGAGTCTC-TAGCCCTGAATACTCTGCCAAGATCTGGATCTGTATTTACTGAGGGTGG--------------------------------------------------------------------------------------------GTGGG-------------------------------------------------GTGGGGAGGAGCTCCATGTTTACATTCAGTATTTAGTGCATATCTTAGCGGTTAAAGTG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116206303 306 + 116334831 AGTGTTTCTCAACCTAGGCTGTACCCTAGAGCACTGATTTGCAGAGCCCAGCCAGTCTG-GGGTAATCTCAGAGTGTAGTTGGGGCTGAGGACAGTGGTCTTCCCTCTCTCCTTGGGTG-TTGGCATCATCTCCGGGCCATCACCTCCAGTCCATCACCTCCAGTCCATTTGCAGACTATGCCCAGATTTGAGTCTC-TAGCCCTGAACACTCTGCTAAGGTCTGGGTTTATATTTACTGTGGGTGG--------------------------------------------------------------------------------------------GTGGG-------------------------------------------------ATGGGGATGCGCTTCACGTTTATGTTCAGCAGTTAGTGCACACCT--GTAGTTAAAATT
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13433705 293 +  16154928 AATGTTTCTCAACCTAGGCTATACTCTAGAGCATTGATGTGCAGAGCCCAGCCAGTCTG-GGGCAATCTCTGAGTGTAGTTGGGGCTGAGGACAATGATCTTCCCTCTCTCTTTGGGTG-TTGGCATCACCTCCTGG--------------CCATCACCTCCAGTCCATTTGCAGACCACACCCAGATTTGAGTCTCTTAGCCCTGAACACTCTGCTAAGGTCTGGATTTATATTTACTGCGGGTGA--------------------------------------------------------------------------------------------GTGGG-------------------------------------------------ATGGGGAGGTGCTCCATGTTTATGTTCAGTAGTTAGTGCACACCT--GTGGTTAAAACT
i proCoq1.NW_012148396v1    I 21 C 0
s otoGar3.GL873689             354048 379 +   3845361 AGTGTTTCTCAATCTAGGCTGCACCCCTAAACACTGATGTGCAGAGTCTGGCTAGTCAG-GGGCGATGTCCAAGTGTAGTTGGGGCTGAAGACAATG---TCCTCTCTCTCCTTGGGTG-TTGGCATCATCTCCTAG--------------CCATCACCTCCTGTCCATTTGCTGAGCACCCCCAGATCTGAGTCTC-CAGCCCT-CACCCTCTGCTGAGGTCTGTGTTCTTGCTCACTGTGTGTGGCCTGGGGATCCATGTCTGTTTGCTGAGCACCCCCAGATCTGAGTCTCCAGCCCTCACCCTCTGCTGAGGTCTGTGTGTCTTGCTCACTGTGTGTGGC-------------------------------------------------TGGGGGGGAAGCGCCATGTCCGTGCTCTGCAGTGAGTGCACATCC---TGGTTAGAATG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59930940 329 -  91889043 AGTGTAACTCAACATGGACTGTATCCAAAA--ACTGATA---------CAGTCACCTTGTGGGTAATCCCAATGTGCAGGTGGGG-TG--GAGAATGTTGGTtacactctccttgggtgtttggcattttctccaag--------------ttgtgctctctatcccatttgctgatgactcacagatttgaatttc-tagtcctg-acactctgttaagatctggatttgtatTTGCAGTGTGTGT--------------------------------------------------------------------------------------------GTGTGCGCGCGCACATGCATGCGCCTATGCATATGACTGTACACATGTGTACTTGGGGGGAGGATTACCATGTTCATGTT-AATAGTTAGTGAAAATCTCAGTGGTTAATACT
i canFam3.chr3              C 0 C 0
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=2326.000000
s hg38.chr15_KI270851v1_alt    150493 2 +    263054 ga-
s panTro5.chr15              73723126 2 -  83230942 ga-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026717 2 -  99763055 ga-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75525 2 -    281578 GA-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70933092 2 + 121039945 GA-
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012115278v1       400454 1 -   4457520 G--
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55214807 2 + 190850796 GA-
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       294944 2 -   2086007 GA-
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       360817 2 +   3831555 GA-
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116206609 2 + 116334831 GA-
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13433998 2 +  16154928 GA-
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             354427 2 +   3845361 GA-
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59931269 2 -  91889043 -AA
i canFam3.chr3              C 0 C 0
e manLeu1.NW_012102332v1       420587 0 -   3636681 C
e cerAty1.NW_012001462v1       372693 0 +   4116138 C
e macNem1.NW_012011934v1       403672 301 +   2379783 I
e rheMac8.chr7              164237398 0 - 169600520 C
e chlSab2.chr26              53804642 0 +  58131712 C
e saiBol1.JH378292             274062 8736 -   2682657 I
e macFas5.chr7              165558208 0 - 171882078 C

a score=322660.000000
s hg38.chr15_KI270851v1_alt    150495 28 +    263054 ---actaattctcattc----ctcttctgttccct
s panTro5.chr15              73723128 28 -  83230942 ---actaattctcattc----ctcttctgttccct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026719 28 -  99763055 ---actaattctcattc----ctcttctgttccct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75527 28 -    281578 ---ACTAATTCTCATTC----CTCTTCTGTTCCCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70933094 28 + 121039945 ---GCTAATTCTCATTC----CTCTTCTGTTCCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164237398 28 - 169600520 ---ACTAATTCTAATTC----CTCTTCTGTTCCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165558208 28 - 171882078 ---ACTAATTCTAATTC----CTCTTCTGTTCCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       403973 28 +   2379783 ---ACTAATTCTAATTC----CTCTTCTGTTCCCT
i macNem1.NW_012011934v1    I 301 C 0
s cerAty1.NW_012001462v1       372693 28 +   4116138 ---ACTAATTCTAATTC----GTCTTCTGTTCCCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53804642 28 +  58131712 ---ACTAATTCTAATTC----CTCTTCTGTTCCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       420587 28 -   3636681 ---ACTAATTCTAATTC----CTCTTCTGTTCCCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       400455 28 -   4457520 ---ACTAATTCTAATTC----CTCTTCTGTTCCCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55214809 25 + 190850796 ---ACTAATTCTCA-------TTCTTCTGTTCCCT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       294946 25 -   2086007 ---ACTAATTCTCA-------TTCTTCTATTCCCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       360819 28 +   3831555 ---ACTAATTCTCATTC----TTCTTCTGTTTCCT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116206611 28 + 116334831 ---CCTAATTCTCATTC----CTCTTCTGTTCCCT
i micMur3.chr9              C 0 I 3
s proCoq1.NW_012148396v1     13434000 28 +  16154928 ---TCTAATTCTCATTC----CTCTTCTGTTCCCT
i proCoq1.NW_012148396v1    C 0 I 414
s otoGar3.GL873689             354429 29 +   3845361 ---CCTCATTCTCATTCA---CTTCCCTGCCTCTT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59931271 35 -  91889043 ATAGTTCTTTCTCATCTGAATCTATTCTTTTCCCT
i canFam3.chr3              C 0 C 0
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=249426.000000
s hg38.chr15_KI270851v1_alt    150523 26 +    263054 -cccttattttccctttcacatttgat
s panTro5.chr15              73723156 26 -  83230942 -cccttattttccctttcacatttgat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026747 26 -  99763055 -cccttattttccctttcacatttgat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75555 26 -    281578 -CCCTTATTTTCCCTTTCACATTTGAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70933122 26 + 121039945 -CCCTTATTTTCCCTTTCACATTTGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164237426 26 - 169600520 -CCCTTATTTTCCTTTTCACATTTGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165558236 26 - 171882078 -CCCTTATTTTCCTTTTCACATTTGAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       404001 26 +   2379783 -CCCTTATTTTCCTTTTCACATTTGAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       372721 26 +   4116138 -CCCTTATTTTCCTTTTCACATTTAAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53804670 26 +  58131712 -CCCTTATTTTCCTTTTCACATTTGAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       420615 26 -   3636681 -CCCTTATTTTCCTTTTCACATTTGAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       400483 26 -   4457520 -CCCTTAATTTCCTTTTCACATTGGAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55214834 26 + 190850796 -CCCTTGTTGTCTCTTTCGCATCTGAT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       294971 23 -   2086007 -CCC---TTGTCTCTTTCACATTTGAT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       360847 26 +   3831555 -CCCTTGTTGTCTCTTTCACATTTGAT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116206642 26 + 116334831 -TCCTTTTGTTCCCTTTCACATTTGAT
i micMur3.chr9              I 3 I 3555
s otoGar3.GL873689             354458 22 +   3845361 -----TCCGTCCCCTTTATTATTGGAT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59931306 27 -  91889043 ACCTCCTTTTCATTTTTCACATCTACT
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=182371.000000
s hg38.chr15_KI270851v1_alt    150549 21 +    263054 TTAACTTACGTGATTTGAAAT
s panTro5.chr15              73723182 21 -  83230942 TTAACTTACGTGATTTGAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026773 21 -  99763055 TTAACTTACGTGATTTGAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75581 21 -    281578 TTAACTTACGTGATTTGAAAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70933148 21 + 121039945 TTAACTTATGTGATTTGAAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164237452 21 - 169600520 TCAACTTATGTGATTTGAAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165558262 21 - 171882078 TCAACTTATGTGATTTGAAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       404027 21 +   2379783 TCAACTTATGTGATTTGAAAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       372747 21 +   4116138 TCAACTTATGTGATTTGAAAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53804696 21 +  58131712 TCAACTTATGTGATTTGAAAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       420641 21 -   3636681 TCAACTTATGTGATTTGAAAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       400509 21 -   4457520 TCAACTTATGTGATTTGAAAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55214860 21 + 190850796 GCAGCCTACGTGATCTAAAAT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       294994 19 -   2086007 TCAACCTGCGTGATCT--AAt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       360873 21 +   3831555 TCAACCTACGTGGTCTAAAAT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             354480 21 +   3845361 TTGACCCGTTTGATGTGCAGT
i otoGar3.GL873689          C 0 I 186
s canFam3.chr3               59931333 21 -  91889043 CTGTCTCATTTGATCTGAAGT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=237711.000000
s hg38.chr15_KI270851v1_alt    150570 41 +    263054 ----------------AGtttc----------tttttttgttttttaagtcagggtctcactct--gtt
s panTro5.chr15              73723203 41 -  83230942 ----------------AGtttc----------tttttttgttttttaagtcagggtctcactct--gtt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026794 40 -  99763055 ----------------AGtttc-----------ttttttgttttttaagtcagagtctcactct--gtt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75602 39 -    281578 ----------------AGtttc----------tttttttgttttttaagtcagggtctcactc----tt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70933169 51 + 121039945 ----------------AGtttctttttcttttttttttttttttttaagtcaaggtctcactct--gtt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164237473 41 - 169600520 ----------------AAtttc------------ctttttttttttaagtcagggtctcactctcagtt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165558283 41 - 171882078 ----------------AAtttc------------ctttttttttttaagtcagggtctcactctcagtt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       404048 41 +   2379783 ----------------AAtttc------------ctttttttttttaagtcagggtctcactctcagtt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       372768 42 +   4116138 ----------------AATTTC-----------Gttttttttttttaagtcagggtctcactctcagtt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53804717 40 +  58131712 ----------------AAtttc------------c-ttttttttttaagtcagggtctcactctcagtt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       420662 41 -   3636681 ----------------AAtttc------------ctttttttttttaagtcagggtctcactctcagtt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       400530 41 -   4457520 ----------------AAtttc------------cttttcttttttaagtcagggtctcactctcagtt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55214881 35 + 190850796 ----------------AAtttt----------------ttttttttaagacagggtctcactct--gtt
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       295013 35 -   2086007 ----------------tttttt----------------ttttttttaagacagggtctcactct--gtt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       360894 35 +   3831555 ----------------AAtttt----------------tttttttaaagatagggtctcactct--gtt
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59931354 51 -  91889043 GTCTTTTAAGTACTTTACTTTC------------CTTGTCTTCTTT----TAGGCTGTCATCCT--TTT
i canFam3.chr3              C 0 I 41
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e otoGar3.GL873689             354501 186 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=2470152.000000
s hg38.chr15_KI270851v1_alt    150611 300 +    263054 gcccaggctggaatgcagtggcaccgtcacggctcactgcagccttaacctccccgggctcaggtgatcctcccacctcagccccctgagtagtgggactacaggtgcgtaccaccacgcctggttaatttttgtattttttgtagagaccgggtttcaccatgttgctctggctggtctcgaactcctgggctcaagcagtctgcccaccttggcctcccaaactgctgggattacaaatgtgagccaccgtgccctgccTGAAATAATCTTAAAGACTGTAC-TTCCCTGTGTTGACTT
s panTro5.chr15              73723244 300 -  83230942 gcccaggctggaatgcagtggcaccatcacggctcactgcagccttaacctccccaggctcaggtgatcctcccacctcagtcccctgagtagtgggactacaggtgcgtaccaccacgcctggttaatttttgtattttttgtagagaccgggtttcaccatgttgctttggctggtctcgaactcctgcgctcaagcagtcggcccactttggcctcccaaactgctgggattacaaatgtgagccaccgtgccctgccTGAAATAATCTTAAAGACTGTAC-TTCCCTGTCTTGACTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74026834 300 -  99763055 gcccaggctggaatgcagtggcaccatcacggctcactgcagccttaacctccccaggctcaggtgatcctcccacctcagtcccctgagtagtgggactacaggtgcgtaccaccacgcctggttaatttttgtattttttgtagagaccgggtttcaccatgttgctttggctggtctcgaactcctgcgctcaagcagtcggcccactttggcctcccaaactgctgggattacaaatgtgagccaccgtgccctgccTGAAATAATCTTAAAGACTGTAC-TTCCCTGTCTTGACTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75641 300 -    281578 gcccaggctggaatgcagtggcaccgtcacagctcactgcagccttaacctccccaggctcaggtgatcctcccacctcagtcccctgagtagtgggactacaggtgcgtaccaccacgcctggttaatttttgtattttttgtagagaccgggtttcaccatgttgctctggctggtctcgaactcctgggctcaagcagtctgcccacctcggcctcccagactgctgggattacaaatgtgagccaccgtgccctgccTGAAATAATCTTAAAGACTGTAC-TTCCCTGTCTTGACTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70933220 300 + 121039945 gcccaggctggaatgcagtggcaccatcacggctcactgcagccttaacctccccaggctcaggtgatcctcccacctgagtccccggagtagtgggactacaggtgcacaccaccacgcctggttaatttttgtattttttgtaaagaacgggttttaccatgttgctccggctggtcttgaactcctgggctcaagcagtctgcctgccttggcctcccaaagtgctgggattacaggtgtgagccaccgtgcccTCCCTGAAATAATCTTAAAGACTGTAC-TTCCCTGTCTTGACTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164237514 296 - 169600520 gcccaggctggaatgcagtggcaccatcacagctcactgtagccttcaactccccagcctcaagtgatcctcctccctcagtctcctgagtagtgggactataggtgcacaccaccacgcctggttaatttttgtattttttgtagagaccgggtttcatcatgttgctctgg-----ctcgaacttctgggctcaagcagtttgcccaccttggcctcccaaagtgctgggattacaggtgtgagccatagtgccctgccTGAAATAATCTTAAAGACTATACTTTCCCTGTCTTGACTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165558324 296 - 171882078 gcccaggctggaatgcagtggcaccatcacggctcactgtagccttcaactccccagcctcaagtgatcctcctccctcagtctcctgagtagtgggactataggtgcacaccaccacgcctggttaatttttgtattttttgtagagaccgggtttcatcatgttgctctgg-----ctcgaacttctgggctcaagcagtttgcccaccttggcctcccaaagtgctgggattacaggtgtgagccatcgtgccctgccTGAAATAATCTTAAAGACTATACTTTCCCTGTCTTGACTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       404089 296 +   2379783 gcccaggctggaatgcagtggcaccatcacggctcactgtagccttcaactccccagcctcaagtgatcctcctccctcagtctcctgagtagtgggactacaggtgcacaccaccacgcctggttaatttttgtattttttgtagagaccgggtttcatcatgttgctctgg-----ctcgaactcctgggctcaagcagtttgcccaccttggcctcccaaagtgctgggattacaggtgtgagccatcgtgccctgccTGAAATAATCTTAAAGACTATACTTTCCCTGTCTTGACTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       372810 296 +   4116138 gcccaggctggaatgcagtggcaccatcacggctcactgcagccttcaactccccaggctcaggtgatcctcctccctcagtctcctgagtagtgggactacaggtgcacaccaccacgcctggttaatttttgtattttttgtagagaccgggtttcatcatgttgctctgg-----ctggaactcctgggctcaagcagtttgcccaccttggcctcccaaagtgctgggattacaggtgtgagccatcgtgccctgccTGAAATAATCTTAAAGACTATACTTTCCCTGTCTTGACTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53804757 293 +  58131712 gcccaggctggaatgcagtggcaccatcacggctcactgcagccttcaactccccaggctcaggtgatcctcctccctcagtctcctgagtagtgggacaaaaatta---accaccgcgcctggttaatttttgtattttttgtagagaccgggtttcatcatgttgctctgg-----ctcgaactcctgggctcaagcagtttgcccaccttggcctcccaaagtgctgggattacaggtgtgagccatcgtgtcctgccTGAAATAATCTTAAAGACTATACTTTCCCTGTCTTGACTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       420703 296 -   3636681 gcccaggctggaatgcagtggcaccatcacggctcactgcagccttcaactccccaggctcaggtgatcctcctccctcagtctcctgagtagtgggactacaggtgcacaccaccacgcctggttaatttttgtattttttgtagagaccgggtttcatcatgttgctctgg-----ctcgaactcctgggttcaagcagtttgcccaccttggcctcccaaagtgctgggattacaggtgtgagccatcgtgccctgccTGAAATAATCTTAAAGACTATACTTTCCCTGTCTTGACTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       400571 296 -   4457520 gcccaggctggaatgcagtggcaccatcatggctcactgcagccttcagctccccaggctcaggtgatcctcctacctcagtctcctgagtagtgggactacaggtgcataccaccacgcctggttaatttttgtattttttgtagagaccgggtttcaccatgttgctctgg-----ctcgaactcctgggcttaagcagtttgcccatcttggcctcccaaagtgctgggattataggtgtgagccatcctgccctgcGTGAAGTAATCTTAAAGACTATACTTTCCCTGTCTTGACTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55214916 295 + 190850796 gcccaggctggaat------gcaccgtcatggctaactgcagccttgatctccccaggctcacgtgatcatgccatatctgtcccctgagcagtgggactgcaggcacgcaccaccatgcctggctaacttttgtattttttgtagagactgagtttcaccctgttgcccaggctggtctcgaactcttgggctcaagcagtctgcctgccttggcctcccaaaatcctgggattaaagttgtgagccactgtgccctgccTGAAATAATCTTGAAGACTGTTGTTTCCCTGTCTTGACTT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       295048 295 -   2086007 gcccaggctggaat------gcaccatcatggctaactgcagccttgacctccccaggctcagatgatcatcccatatcagtcccctgagcagtgggactacaggcacgcaccaccacgcctggctgactttggtattttttgtagagagcaggtttcaccatgttgcacaggctggtctcaaactcttgggctcaagcagtctgcctgcctcggcctcccaaaatcctgggattaaagttgtaagccactgtgccctgccTGAAATAATCTTTAAGACTGTCCTTTCCCTGTCTTGACTT
i cebCap1.NW_016107707v1    C 0 I 98
s aotNan1.NW_018503298v1       360929 295 +   3831555 gcccaggctggaat------gcaccatcatggctaactgtagccctgacctccccaggctcaggtgatcatcccatatcagtcccctgagcagtgggactacaggcacgtaccaccacgcctggctaacttttgtattttttgtagagaccggatttcaccatgttgcccaggctggtctcaaactcttgggctcaagcagtctgcccgcctcggcctcccaaaatcctggcattaaagttgtgagccattgtgccctgccTGAAATAATCTTTAAGACTGTCCTTTCCCTGTCTTAACTT
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931405  41 -  91889043 I
e otoGar3.GL873689             354501 186 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=208627.000000
s hg38.chr15_KI270851v1_alt    150911 31 +    263054 CTGCTGTCATCCTTTCTTTTTTGGACCCTTG
s panTro5.chr15              73723544 31 -  83230942 GTACTGTCATCCTTTCTTTTTTGGACCCTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027134 30 -  99763055 GTACTGTCATCCTTTC-TTTTTGGACCCTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75941 31 -    281578 CTACTGTCATCCTTTCTTTTTTGGACCCTTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70933520 30 + 121039945 TGACTGTCATCCTTTC-TTTTTGGACCCCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164237810 31 - 169600520 CGACTCTCATCCTTTCTTTTTTGGACCCTTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165558620 31 - 171882078 CGACTCTCATCCTTTCTTTTTTGGACCCTTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       404385 31 +   2379783 CGACTCTCATCCTTTCTTTTTTGGACCCTTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       373106 31 +   4116138 CGACTCTCATCCTTTCTTTTTTGGACCTTTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53805050 31 +  58131712 CGACTCTCATCCTTTCTTTTTTGGACCCTTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       420999 31 -   3636681 CGACTCTCATCCTTTCTTTTTTGGACCCTTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       400867 31 -   4457520 CGACTCTCATCCTTTCCTTTTTGGACCCTTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55215211 31 + 190850796 AGATTCTTACCCTTTCTTTTTTGGACCTTTG
i calJac3.chr3              C 0 C 0
s aotNan1.NW_018503298v1       361224 31 +   3831555 AGACTCTTACCCTTTCCTTTTTGGACCTTTG
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931405 41 -  91889043 I
e otoGar3.GL873689             354501 186 +   3845361 I
e cebCap1.NW_016107707v1       295343 98 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=61062.000000
s hg38.chr15_KI270851v1_alt    150942 9 +    263054 GTAATAGCC
s panTro5.chr15              73723575 9 -  83230942 GTAATAGCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027164 9 -  99763055 GTAATAGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75972 9 -    281578 GTAATAGCG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70933550 9 + 121039945 GTAGTAGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164237841 9 - 169600520 GTAATAGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165558651 9 - 171882078 GTAATAGCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       404416 9 +   2379783 GTAATAGCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       373137 9 +   4116138 GTAATAGCC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53805081 9 +  58131712 GTAATAGCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421030 9 -   3636681 GTAATAGCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       400898 9 -   4457520 GTAATAGCC
i colAng1.NW_012115278v1    C 0 C 0
s aotNan1.NW_018503298v1       361255 9 +   3831555 GTGATAGCC
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931405 41 -  91889043 I
e otoGar3.GL873689             354501 186 +   3845361 I
e cebCap1.NW_016107707v1       295343 98 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55215242 0 + 190850796 C

a score=18547.000000
s hg38.chr15_KI270851v1_alt    150951 14 +    263054 tttttttttttttt
s panTro5.chr15              73723584 14 -  83230942 tttttttttttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027173 14 -  99763055 tttttttttttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75981 14 -    281578 TCTTttttttgttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70933559 14 + 121039945 ttttttgtctgttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164237850 14 - 169600520 tttttttttttttc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165558660  1 - 171882078 t-------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       404425 14 +   2379783 TTTTTTTTTTTTTT
i macNem1.NW_012011934v1    C 0 M 4025
s cerAty1.NW_012001462v1       373146 14 +   4116138 tttttttttttttt
i cerAty1.NW_012001462v1    C 0 C 0
s colAng1.NW_012115278v1       400907  2 -   4457520 tt------------
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931405 41 -  91889043 I
e aotNan1.NW_018503298v1       361264  0 +   3831555 C
e otoGar3.GL873689             354501 186 +   3845361 I
e cebCap1.NW_016107707v1       295343 98 -   2086007 I
e manLeu1.NW_012102332v1       421039  0 -   3636681 C
e chlSab2.chr26              53805090  0 +  58131712 C
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55215242  0 + 190850796 C

a score=1253954.000000
s hg38.chr15_KI270851v1_alt    150965 295 +    263054 tttttttttt-------tttgagatg-cagtcccactctgtcacccaggctggagtgcagtggtgcgatctccactcactgcgacgtccgcctcccaggttcaagcaattcccttgcctcagcctcccgagtagctgggactataggtgcgttgccaccacatctggctaattttttgtatttttagtagagatggggtttcgctgtgttagccaggatggtctttatctcctgacttcatgatccacccgcttc-ggcctcccaaagtgctgggattacaggcgtcagccaccgtgcctggcc
s panTro5.chr15              73723598 287 -  83230942 ttttttt--------------ggatg-cagtcccactctgtcacccaggctggagtgcagtggtgcgatctccactcactgcaacgtccgcctcccaggttcaaacaattcccttgcctcagcctcccgagtagctgggactataggtgcgt-gccacctcacctggctaattttttgtatttttagtagagatggggtttcgctgtgttagccgggatggtctttaactcctgacttcatgatccacccgcttc-ggcctcccaaagtgctgggattacaggcgtcagccaccgtgcctgacc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027187 281 -  99763055 ---------------------gggtgtcagtcccactctgtcacccaggctggagtgcagtggtgcgatctccactcactgcaacgtccgcctcccaggttcaaacaattcccttgcctcagcctcccgagtagctgggactataggtgcgt-gccacctcacctggctaattttttgtatttttagtagagatggggtttcgctgtgttagccgggatggtctttatctcctgacttcatgatccacccgcttc-ggcctcccaaagtgctgggattacaggcgtcagccaccgtgcctgacc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        75995 301 -    281578 gtttgtttttgtttttgtttgagatg-cagtcccactctgtcacccaggctggagtgcagtagtgcgatctccactcactgcaacgtccgcctcccaggttcaagcaattcccttgcctcagcctcccgagtagctgggactataggtgcgt-gccaccacacctggctaattttttgtatttttagtagagatgggttttcgctgtgttagccaggatggtctttatctcctgacttcatgatccgcccgcttc-ggcctcccaaagtgctgggattacaggcgtcagccaccgtgcctggcc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70933573 285 + 121039945 gtttg----------------agatg-cagtcctgctctgtcacccaggctggagtgcagtggtgtgatctccgctcactgcaacgtccgcctcccgggttcaagcaattctcttgcctcagcctcctgagtagctgtgactatgggcacgt-gccaccacacccggctaattttttgtatttttagtagagatggggttttgccgtgttagccaggatggtcttgatcccctgacctcatgatccgtctgcttt-ggcctcccaaaatgctgggattacaggagtcagccaccgtgcccggcc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164237864 282 - 169600520 --------------------gagatg-cagtcccgctctgtcacccatgctggagtgcagtggtgcgatctctgctcactgcaacgtctgcctcctgggttcaagcaattcccttgcctcagctccccgagtagctgggcctataggcgcgt-gccaccacgcccggctaattttttgtatttttagtacagacagggtttcaccatgttagccaggatggtcttaatctcctgacctcgtgatccgcctgcttcgggcctcccaaagtgttgggattacaggcgtgagccactgcgcccggcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165558661 295 - 171882078 tttttttttt-------ttcgagatg-cagtcccgctctgtcacccatgctggagtgcagtggtgcgatctctgctcactgcaacgtctgcctcctgggttcaagcaattcccttgcctcagctccccgagtagctgggcctataggcgcgt-gccaccacgcccggctaattttttgtatttttagtacagacagggtttcaccatgttagccaggatggtcttaatctcctgacctcgtgatccgcctgcttcgggcctcccaaagtgttgggattacaggcgtgagccactgcgcccggcc
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       373160 283 +   4116138 -------------------cgagatg-cagtcccgctctgtcacccatgctggagtgcagtggtgcgatctctgctcactgcaacgtctgcctcctgggttcaagcaattcccttgcctcagctccccgagtagctgggcctataggcgcgt-gccaccacgcccggctaattttttgtattttcagtacagacagggtttcaccatgttagccaggatggtcttaatctcctgacctcgtgatcggcctgctttgggcctcccaaagtgttgggattacaggcgtgagccactgcgcccggcc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53805090 292 +  58131712 --tttttttt-------ttcgagatg-cagtcccgctctgtcacccacgctggagtgcaatggtgcgatctctgctcactacaacgtctgcctcctgggttcaagcaattcccttgcctcagctccccgagtagctgggcctatatgcgtgt-gccaccacgcccggctaattttttgtatttttagtaccgacagggtttcaccatgttagccaggatggccttaatctcctgaccccgtgatccgcctgcttc-agcctcccaaagtgctgggattacaggcgtgagccactgtgcccggcc
i chlSab2.chr26             C 0 I 317
s manLeu1.NW_012102332v1       421039 294 -   3636681 -ttttttttt-------ttcgagatg-cagtcccgctctgtcacccatgctggagtgcagtggtgcggtctctgctcactgcaacgtctgcctcctgggttcaagcaattcccttgcctcagctccccgagtagctgggcctataggcgcgt-gccaccacgcccgactaattttttgtatttttagtacagacagggtttcaccgtgttagccaggatgttcttaatcgcctgacctcgtgatccgcctgcttcgggcctcccaaagtgttgggattacaggcgtgagccactgcgcccggcc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       400909 294 -   4457520 tttttttttt-------ttcgagata-cagtcccgctctgtcacccacgctggagtgcagtggtgcgatctctgctcactgcaatgtctgcctcccaggttcaagcaattcccttgcctcagctccctgagtagctgggcctataggcgcgt-gccaccacgcccggctaattttttgtatttttagtacagacagggtttcaccatgttagccaggatggtcttaatctcctgacctcatgatccgcctgcttc-ggcctcccaaagtgctgggattacaggcatgagccactgcgcccggcc
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931405  41 -  91889043 I
e aotNan1.NW_018503298v1       361264   0 +   3831555 C
e otoGar3.GL873689             354501 186 +   3845361 I
e cebCap1.NW_016107707v1       295343  98 -   2086007 I
e macNem1.NW_012011934v1       404439 4025 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55215242   0 + 190850796 C

a score=5005.000000
s hg38.chr15_KI270851v1_alt    151260 1 +    263054 A
s panTro5.chr15              73723885 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027468 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76296 1 -    281578 A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70933858 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238146 1 - 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165558956 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       373443 1 +   4116138 A
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53805699 1 +  58131712 A
i chlSab2.chr26             I 317 C 0
s manLeu1.NW_012102332v1       421333 1 -   3636681 A
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       401203 1 -   4457520 A
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931405 41 -  91889043 I
e aotNan1.NW_018503298v1       361264 0 +   3831555 C
e otoGar3.GL873689             354501 186 +   3845361 I
e cebCap1.NW_016107707v1       295343 98 -   2086007 I
e macNem1.NW_012011934v1       404439 4025 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55215242 0 + 190850796 C

a score=45749.000000
s hg38.chr15_KI270851v1_alt    151261 8 +    263054 GTAATAGC
s panTro5.chr15              73723886 8 -  83230942 GTAATAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027469 8 -  99763055 GTAATAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76297 8 -    281578 GTAATAGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70933859 8 + 121039945 GTAATAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238147 8 - 169600520 GTGATAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165558957 8 - 171882078 GTGATAGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       373444 8 +   4116138 GTGATAGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53805700 8 +  58131712 GTGATAGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421334 8 -   3636681 GTGATAGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       401204 8 -   4457520 GTGATAGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55215242 8 + 190850796 GTGATAGC
i calJac3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931405 41 -  91889043 I
e aotNan1.NW_018503298v1       361264 0 +   3831555 C
e otoGar3.GL873689             354501 186 +   3845361 I
e cebCap1.NW_016107707v1       295343 98 -   2086007 I
e macNem1.NW_012011934v1       404439 4025 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=3197.000000
s hg38.chr15_KI270851v1_alt    151269 1 +    263054 T
s panTro5.chr15              73723894 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027477 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76305 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70933867 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238155 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165558965 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       373452 1 +   4116138 T
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53805708 1 +  58131712 T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421342 1 -   3636681 T
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       401212 1 -   4457520 T
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55215250 1 + 190850796 A
i calJac3.chr3              C 0 C 0
s canFam3.chr3               59931446 1 -  91889043 T
i canFam3.chr3              I 41 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e aotNan1.NW_018503298v1       361264 0 +   3831555 C
e otoGar3.GL873689             354501 186 +   3845361 I
e cebCap1.NW_016107707v1       295343 98 -   2086007 I
e macNem1.NW_012011934v1       404439 4025 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=198425.000000
s hg38.chr15_KI270851v1_alt    151270 29 +    263054 TCTTAGTTCACCTTCTCTGTTTCTGTTTT
s panTro5.chr15              73723895 29 -  83230942 TCTTAATTCATCTTCTCTGTTTTTGTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027478 29 -  99763055 TCTTAATTCATCTTCTCTGTTTTTGTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76306 29 -    281578 TCTTAGTTCACCTTCTCTGTTTCTGTTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70933868 29 + 121039945 TCTTAATTCATCTTCTCTGTTTCTGTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238156 29 - 169600520 TCTTAATTCATCTTCTCTGTTTCTGTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165558966 29 - 171882078 TCTTAATTCATCTTCTCTGTTTCTGTTTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       373453 29 +   4116138 TCTTAATTCATCTTCTCTGTTTCTGTTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53805709 29 +  58131712 TCTTAATTCATCTTCTCTGTTTCTGTTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421343 29 -   3636681 TCTTAATTCATCTTCTCTGTTTCTGTTTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       401213 26 -   4457520 TCTTAATTCA---TCTCTGTTTCTGTTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55215251 29 + 190850796 TCTTAATTCATCTTCTCTGTTTCTGTTTT
i calJac3.chr3              C 0 I 33
s aotNan1.NW_018503298v1       361264 29 +   3831555 TCTTAATTCATCTTCTCTGTTTCTGTTTT
i aotNan1.NW_018503298v1    C 0 I 43
s canFam3.chr3               59931447 28 -  91889043 TTCTAGTTT-CTTCCTTTGTCTCCATCCA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e otoGar3.GL873689             354501 186 +   3845361 I
e cebCap1.NW_016107707v1       295343 98 -   2086007 I
e macNem1.NW_012011934v1       404439 4025 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=18594.000000
s hg38.chr15_KI270851v1_alt    151299  7 +    263054 -----CTGA---AAC
s panTro5.chr15              73723924  7 -  83230942 -----CTGA---AAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027507  7 -  99763055 -----CTGA---AAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76335  7 -    281578 -----CTGA---AAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70933897  7 + 121039945 -----CTGA---AAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238185 10 - 169600520 -----CTGAGTTATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165558995 10 - 171882078 -----CTGAGTTATT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       373482 10 +   4116138 -----CTGAGTTATT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53805738 10 +  58131712 -----CTGAGTTATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421372 10 -   3636681 -----CTGAGTTATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       401239 10 -   4457520 -----CTGAGTTATT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55215313 10 + 190850796 -----CTGAGTTATT
i calJac3.chr3              I 33 C 0
s canFam3.chr3               59931475 14 -  91889043 TTGGACTGAGTTAT-
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e aotNan1.NW_018503298v1       361293 43 +   3831555 I
e otoGar3.GL873689             354501 186 +   3845361 I
e cebCap1.NW_016107707v1       295343 98 -   2086007 I
e macNem1.NW_012011934v1       404439 4025 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=1155204.000000
s hg38.chr15_KI270851v1_alt    151306 154 +    263054 ACTTTAAGACACGGGTCAAATGTCGTATTCCCTTGAGTGCCTAAAGATAGTCTGAAACTCCTGGAGCACGGCCCACATGGAGCTGTGAGTTCTGACCACTGTTAGCCTCTTATC---ATGTGCATTGTGGTAGGGTTTGGACTGAACCCCA-GTGCAC
s panTro5.chr15              73723931 154 -  83230942 ACTTTAAGACACAGGTCAAATGTCGTATTCCCTTGAGTGCCTAAAGATAGTCTGTAACTCCTGGAGCACGGCCCACATGGAGCTGTGAGTTCTGACCACTGTTAGCCTCTTATC---ATGTGCATTGTGGTAGGGTTTGGACTGAACCCCA-GTGCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027514 154 -  99763055 ACTTTAAGACACAGGTCAAATGTCGTATTCCCTTGAGTGCCTAAAGATAGTCTGTAACTCCTGGAGCACGGCCCACATGGAGCTGTGAGTTCTGACCACTGTTAGCCTCTTATC---ATGTGCATTGTGGTAGGGTTTGGACTGAACCCCA-GTGCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76342 154 -    281578 ACTTTAAGACACAGGTCAAATGTTGTATTCCCTTGAGTGCCTAAAGATAGTCTGTAATTCCTGGAGCACGGCCCACATGGAGCTGTGAGTTCTGACCGCTGTTAGCCTCTTATC---ATGTGCATTGTGGTAGGGTTTGGACTGAACCCCA-GTGCAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70933904 154 + 121039945 ACTTTAAGACACATGTCAAATGTCGTATTCTCTTGAGTGCCTAAAGATAGTCTGTAACTCCTGGAGCATGGCCCACATAGGGCTGTGAGTTCTGGCCACTGTTAGCCTCTTATC---GTGTGCACTGTGGTAGGGTTTGGACTGAACCCCG-GTGCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238195 151 - 169600520 ACTTTAAGACACAGGTCAAATGTCATATTCCCTTGAGTGCCTGAAGATAGTCTGTAACTCCTGGAGCACGGCCCACATGGGGCTGTGAGTTCTGGCCACCATTAGCCTCTTA------TGTGCACTGTGGTAGGGACTGGACTGAACCCCA-GTGCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165559005 151 - 171882078 ACTTTAAGACACAGGTCAAATGTCATATTCCCTTGAGTGCCTGAAGATAGTCTGTAACTCCTGGAGCACGGCCCACATGGGGCTGTGAGTTCTGGCCACCATTAGCCTCTTA------TGTGCACTGTGGTAGGGACTGGACTGAACCCCA-GTGCAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       373492 151 +   4116138 ACTTTAAGACACAGGTCAAATGTCATATTCCCTTGAGTGCCTGAAGATAGTCTGTAACTCCTGGAGCACGGCCCACATGGGGCTGTGAGTTCTGGCCACCATTAGCCTCTTA------TGTGCACTGTGGTAGGGACTGGACTGAACCCTA-GTGCAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53805748 151 +  58131712 ACTTTAAGACACAGGTCAAATGTCATATTCCCTTGAGTGCCTGAAGATAGTCTGTAACTCCTGGAGCACGGCCCACATGGGGCTGTGAGTTCTGGCCACCATTAGCCTCTTA------TGTGCACGGTGGTAGGGACTGGACTGAACCCCA-GTGCAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421382 151 -   3636681 ACTTTAAGACACAGGTCAAATGTCATATTCCCTTGAGTGCCTGAAGATAGTCTGTAACTCCTGGAGCACGGCCCACATGGGGCTGTGAGTTCTGGCCACCATTAGCCTCTTA------TGTGCACTGTGGTAGGGACTGGACTGAACCCCA-GTGCAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       401249 151 -   4457520 ACTTTAAGACACAGGTCAAATGTCATATTCCCTTGAGTGCCTGAAGATAGTCTGTAACTCCTGGAGCACGGCCCACATGGGGCTGTGAGTTCTGGCCACCATTAGCCTCTTA------CATGCACTGTGGTAGGGATTGGACTGAACCCCA-GTGCTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55215323 158 + 190850796 ACTTTAAGACATAGGTCAAATGTCACATTCCCTTGAGTGCTTAAAGATAGTCCGTAACTCCTGGAGCACGGCCCACATGGGGCTGTGAATTCTGGCCACTGTTAGCCTCTCATCTTTGCGTGCATTGTGGTGGGGACTGGACTGCACCACAGGGGCAG
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       295441 158 -   2086007 ACTTTAAGACACAGGTCAAATGTCACATTCCCTTGAGTCCCTAAAGATATTCTGTAACTCCTGGAGCACGGCCCACATGGGGCTGTGAATTCTGGCCACTGTTAGCCTCTCATCCTGGTGTGCACTGTGGTGGGGACTGGACTGCTCCCTGGGGGCAG
i cebCap1.NW_016107707v1    I 98 C 0
s aotNan1.NW_018503298v1       361336 158 +   3831555 ACTTTAAGACACAGGTCAAATGTCACGTTCCCTTGAGTGCCTAAAGATAGTCTGTAACTCCTGGAGCACGGCCCACATGGGGCTGTGATTTCTGGCCTCTGTTAGTCTCTCATCCTTGTGTGCACTGTGGTGGGGACTGGACTGCACCCCAGGGGCAG
i aotNan1.NW_018503298v1    I 43 C 0
s canFam3.chr3               59931489 146 -  91889043 GCCTTAAGTTATGAGCA------TTTATTCCCTGGACCACCTAAAGATGGTGTGTAACTGCCAGAGTACAGTACACTTGAGGCTGTTTAGTCTGGCTCCCGTTTGCCTCCCAGCCTTAAGTG-GTTGT-GTGGGAGCTGGACTGAACTGCA-GCA---
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e otoGar3.GL873689             354501 186 +   3845361 I
e macNem1.NW_012011934v1       404439 4025 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=552021.000000
s hg38.chr15_KI270851v1_alt    151460 69 +    263054 GTATTCACTGCTCTCCTCTGA-CTGAA-GACTAGAAGAGTCAAAGCTTTCCATTCACTCGTT-AAACTTCAG
s panTro5.chr15              73724085 69 -  83230942 GTATTCACTGCCCTCCTCTGA-CTGAA-GACTAGAAGAGTCAAACCTTTCCATTCACTCGTT-CAACTTCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027668 69 -  99763055 GTATTCACTGCCCTCCTCTGA-CTGAA-GACTAGAAGAGTCAAACCTTTCCATTCACTCGTT-CAACTTCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76496 69 -    281578 GTATTCACTGCGCTCCTCTGA-CTGAA-GAGTAGAAGAGTCAAACCTTTCCATTCACTCGTT-AAACTTCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70934058 70 + 121039945 ATGTTCACTGCCCTCCTCTGA-CTGAATGAGTAGAAGAGTCAAACCTTTCCATTCACTCATT-AAACTTCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238346 70 - 169600520 GTCTTCACTGCCCTCCTCTGA-CTGAATGAGTAGAAGAGTCAAACCTTTCCATTTACTCGTT-AAATTTCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165559156 70 - 171882078 GTCTTCACTGCCCTCCTCTGA-CTGAATGAGTAGAAGAGTCAAACCTTTCCATTTACTCGTT-AAATTTCAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       373643 70 +   4116138 GTCTTCACTGCCCTCCTCTGA-CTGAATGAGTAGAAGAGTCAAACCTTTCCATTTACTCGTT-AAATTTCAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53805899 70 +  58131712 GTCTTCACTGCCCTCCTCTGA-CTGGATGAGTAGAAGAGTCAAACCTTTCCATTTACTCATT-AAACTTCAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421533 70 -   3636681 GTCTTCACTGCCCTCCTCTGA-CTGAATGAGTAGAAGAGTCAAACCTTTCCATTTACTCGTT-AAATTTCAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       401400 70 -   4457520 GTCTTCACTGCCCTCCTCTGA-CTGAATGAGGAGAAGAGTCAAATCTTTCCATTCACTTGTT-AAACTTCAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55215481 63 + 190850796 GTCTTCACTGCCCT--------CTGACTGAGTAGACAAGTCAAACCTTTCCATTCACTCGTT-AAACCTCAG
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       295599 70 -   2086007 GTCGTCACTACCCTCCTCTGA-CTGAATGAGTAGGCGAGGCAAACCTTTCCATTCCCTTGCT-AAACCTCAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       361494 70 +   3831555 GTCTTCACTGCCCTCCTCTGA-CTGAATGAGTAGACGAGTCAAACCTTTCCATTCACTCGTT-AAACCTCAG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             354687 69 +   3845361 GTCTTAGCTGCCTCCCTTCTG-CC-AGTGAACAGTGGAACCAGGCCTTTCCATGCTCTTGTT-AGACCTTAG
i otoGar3.GL873689          I 186 I 1
s canFam3.chr3               59931635 69 -  91889043 GTATTA---GCcctctttttacctgaatgagcagatgagccaagcctttccattccctcattaaaacatcag
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e macNem1.NW_012011934v1       404439 4025 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=204708.000000
s hg38.chr15_KI270851v1_alt    151529 27 +    263054 GGGCCCTGAATGTTTTTGGCTCACTtt
s panTro5.chr15              73724154 27 -  83230942 GGGCCCTGAACGTTTTCGGCTCACTtt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027737 27 -  99763055 GGGCCCTGAACGTTTTCGGCTCACTtt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76565 27 -    281578 GGGCCCTGAATGTTTTTGGCTCACTtt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70934128 27 + 121039945 AGGCCCTGAATGCTTTCGGCTCACTtt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238416 27 - 169600520 GGGCTCTGAATGTTCTTGCCTCACttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165559226 27 - 171882078 GGGCTCTGAATGTTCTTGCCTCACttt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       373713 27 +   4116138 GGGCTCTAAATGCTCTTGCCTCACTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53805969 27 +  58131712 GGGCTCTGAATGCTCTTGCCTCACTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421603 27 -   3636681 GGGCTCTGAATGCTCTTGCCTCACttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       401470 27 -   4457520 GGGCTCTGAATGCTCTTGCCTCACTTt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55215544 27 + 190850796 AGGCCCTGAATGCTCATGGCTCACttt
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       295669 27 -   2086007 AGGCCCTGAATGCTCATGGCTCACttt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       361564 27 +   3831555 AGGCCCTGAATGCTCATGGCTCACTTT
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59931704 27 -  91889043 agatgctgaatgtttgtggctCACTCT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e otoGar3.GL873689             354756  1 +   3845361 I
e macNem1.NW_012011934v1       404439 4025 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=115934.000000
s hg38.chr15_KI270851v1_alt    151556 14 +    263054 ttaattttattttt
s panTro5.chr15              73724181 14 -  83230942 ttaattttattttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027764 14 -  99763055 ttaattttattttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76592 14 -    281578 ttaattttattttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70934155 14 + 121039945 ttaattttattttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238443 14 - 169600520 ttaattttattttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165559253 14 - 171882078 ttaattttattttt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       373740 14 +   4116138 TTAATTTTATTTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53805996 14 +  58131712 TTAATTTTATTTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421630 14 -   3636681 ttaattttattttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       401497 14 -   4457520 ttaattttattttt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55215571 14 + 190850796 ttaattttattttt
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       295696 14 -   2086007 ttaattttattttt
i cebCap1.NW_016107707v1    C 0 I 61
s aotNan1.NW_018503298v1       361591 14 +   3831555 TTAATTTTATTTTT
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931731  0 -  91889043 C
e otoGar3.GL873689             354756  1 +   3845361 I
e macNem1.NW_012011934v1       404439 4025 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=25464.000000
s hg38.chr15_KI270851v1_alt    151570 4 +    263054 tata
s panTro5.chr15              73724195 4 -  83230942 tata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027778 4 -  99763055 tata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76606 4 -    281578 tata
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70934169 4 + 121039945 tata
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238457 4 - 169600520 tata
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165559267 4 - 171882078 tata
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       373754 4 +   4116138 TATA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53806010 4 +  58131712 TATA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421644 4 -   3636681 tata
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       401511 4 -   4457520 tata
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55215585 4 + 190850796 cata
i calJac3.chr3              C 0 C 0
s aotNan1.NW_018503298v1       361605 4 +   3831555 TACA
i aotNan1.NW_018503298v1    C 0 I 99
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931731 0 -  91889043 C
e otoGar3.GL873689             354756 1 +   3845361 I
e cebCap1.NW_016107707v1       295710 61 -   2086007 I
e macNem1.NW_012011934v1       404439 4025 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=74748.000000
s hg38.chr15_KI270851v1_alt    151574 31 +    263054 ---------tt------------atttt------------aattttttaaatttaaatt-aaa------aA
s panTro5.chr15              73724199 31 -  83230942 ---------tt------------atttt------------aattttttaaatttaaatt-aaa------aa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027782 32 -  99763055 ---------tt------------atttt------------aattttttaaatttaaattaaaA------AA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76610 31 -    281578 ---------tt------------atttt------------aattttttaaatttaaatt-aaa------at
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70934173 30 + 121039945 ---------tt------------atttt------------aattttttaaatttaaatt--aa------aa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238461 55 - 169600520 ---------ttaaaataatataaattttaaaaaatattaaaaatttttaaattttaatt-tAA------tt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165559271 55 - 171882078 ---------ttaaaataatataaattttaaaaaatattaaaaatttttaaattttaatt-tAA------tt
i macFas5.chr7              C 0 I 2
s cerAty1.NW_012001462v1       373758 55 +   4116138 ---------TTAAAATAATATAAATTTTAAAAAATATTAAAAATTTTTTAATTTTAATT-TAA------tt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53806014 61 +  58131712 ---------TTAAAATAATATAAATTTTAAAAAATATTAAAATTTTTTAAATTTTAATT-TAATTTAAttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421648 55 -   3636681 ---------ttaaaataatataaattttaaaaaatattaaaaatttttaaattttaatt-tAA------tt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       401515 31 -   4457520 ---------tt------------atttt------------aattttttaaattttaatt-taa------tt
i colAng1.NW_012115278v1    C 0 I 6
s calJac3.chr3               55215589 34 + 190850796 ttaccttattt------------atttt------------agttttaaaaattttagt-------------
i calJac3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931731  0 -  91889043 C
e aotNan1.NW_018503298v1       361609 99 +   3831555 I
e otoGar3.GL873689             354756  1 +   3845361 I
e cebCap1.NW_016107707v1       295710 61 -   2086007 I
e macNem1.NW_012011934v1       404439 4025 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=45795.000000
s hg38.chr15_KI270851v1_alt    151605 8 +    263054 tttttttt
s panTro5.chr15              73724230 8 -  83230942 tttttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027814 8 -  99763055 tttttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76641 8 -    281578 ttattttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70934203 8 + 121039945 tttttttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238516 8 - 169600520 tttttttg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165559328 8 - 171882078 tttttttg
i macFas5.chr7              I 2 C 0
s macNem1.NW_012011934v1       408512 8 +   2379783 tttttttg
i macNem1.NW_012011934v1    M 4025 C 0
s cerAty1.NW_012001462v1       373813 8 +   4116138 tttttttg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53806075 8 +  58131712 tttttttg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421703 8 -   3636681 tttttttg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       401552 8 -   4457520 tttttttg
i colAng1.NW_012115278v1    I 6 C 0
s calJac3.chr3               55215623 8 + 190850796 tttttttt
i calJac3.chr3              C 0 I 6
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931731 0 -  91889043 C
e aotNan1.NW_018503298v1       361609 99 +   3831555 I
e otoGar3.GL873689             354756 1 +   3845361 I
e cebCap1.NW_016107707v1       295710 61 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=284183.000000
s hg38.chr15_KI270851v1_alt    151613 39 +    263054 gacagggtcttgctctg-------------------------------------------ttgcccaggctggagtacagtg
s panTro5.chr15              73724238 39 -  83230942 gacagggtcttgctcta-------------------------------------------ttgcccaggctggagtacagtg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027822 39 -  99763055 gacagggtcttgctcta-------------------------------------------ttgcccaggctggagtacagtg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76649 39 -    281578 gacagggtcttgctcta-------------------------------------------ttgcccaggctggagtacagtg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70934211 39 + 121039945 gacagggtcttgctctg-------------------------------------------ttgcccaagctggagtacagtg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238524 39 - 169600520 gacagggtcttgctctg-------------------------------------------ttgcccaggctgtagtatagtg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165559336 39 - 171882078 gacagggtcttgctctg-------------------------------------------ttgcccaggctggagtatagtg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       408520 39 +   2379783 gacagggtcttgctctg-------------------------------------------ttgcccaggctggagtatagtg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       373821 39 +   4116138 gacagggtcttgttctg-------------------------------------------ttgcccaggctggagtatagtg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53806083 39 +  58131712 gacagggtcttgctctg-------------------------------------------tttcccaggctggagtatagtg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421711 39 -   3636681 gacagggtcttgctctg-------------------------------------------ttgcccagactggagtatagtg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       401560 39 -   4457520 gacagggtcttgctctg-------------------------------------------ttgcccaggctggagtatagtg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55215637 82 + 190850796 GACAGGGTCTCACTTTATATTACATAATAGTTTATGTAATATAAACTATTACATAAACTCTAgcccaggctagagtacagtg
i calJac3.chr3              I 6 C 0
s cebCap1.NW_016107707v1       295771 39 -   2086007 gacagggtcttgcttta-------------------------------------------ttgcccaggctagagtacagtg
i cebCap1.NW_016107707v1    I 61 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931731  0 -  91889043 C
e aotNan1.NW_018503298v1       361609 99 +   3831555 I
e otoGar3.GL873689             354756  1 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=1929542.000000
s hg38.chr15_KI270851v1_alt    151652 229 +    263054 gagtgatctcaactcactgcagcctctacctcctggtctcaagcagttctcccacctcagcctcccaagtagctgggagtacaggcg------cgccaccacctctggctaattttttgtatttttggt-agaaatgcggttttgccatgttgttcaggctggtcttgtactcctgagctcaaacaattcacccgccgtggcctccc-aagtgctgggattacaggtgtgagccacc
s panTro5.chr15              73724277 229 -  83230942 gagtgatctcaactcactgctgcctctacctcctggtctcaagcagttctcccacctcagcctcccaggtagctgggagtacaggcg------cgccaccacctctggctaattttttgtatttttggt-agaaatgcggttttgccgtgttgttcaggctggtcttgtactcctgagctcaaacaattcacctgccttggcctccc-aagtgctgggattacaggtgtgagccacc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74027861 229 -  99763055 gagtgatctcaactcactgcagcctctacctcctggtctcaagcagttctcccacctcagcctcccaggtagctgggagtacaggcg------cgccaccacctctggctaattttttgtatttttggt-agaaatgcggttttgccatgttgttcaggctggtcttgtactcctgagctcaaacaattcacctgccttggcctccc-aagtgctgggattacaggtgtgagccacc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76688 229 -    281578 gagtgatctcaactcactgcagcctctacctcctggtctcaagcagttctcccacctcagcctcccaagtagctgggagtacaggtg------cgccaccacctctggctaattttttgtatttttggt-agaaatgcggttttgccatgttgttcaggctggtcttgtactcctgagctcaaacaattcacctgccttggcctccc-aagtgctgggattacaggtgtgagccacc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70934250 230 + 121039945 gagtgatctcaactcactgcagcctctacctcctggtctcaagtaattctcccacctcagcctcccaagtagctgagagtacaggca------cgccaccacccctggctaattttttgtatttttgat-agagatggggttttgccgtgttgcccaggctggtcttgtactcctgagctcaaacaattcacctgccttggcctcccaaagtgctgggattacaggtgtgagccacc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238563 228 - 169600520 gagtgatctcaattcactgcagcctctacctcctggtctcaagcagttctcccacctctgcct-ccaagtagctgggagtacaggca------caccaccacccctggctaattttttgtatttttggt-agagatggcattgcgccatgttgcccagactggtcttgtactcctgagctcaaacagttcacccgccttggcctccc-aagtgctggaattacaggtgtgagccacc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165559375 228 - 171882078 gagtgatctcaattcactgcagcctctacctcctggtctcaagcagttctcccacctcagcct-ccaagtagctgggagtacaggca------caccaccacccctggctaattttttgtatttttgct-agagatggcattgcgccatgttgcccagactggtcttgtactcctgagctcaaacagttcacccgccttggcctccc-aagtgctggaattacaggtgtgagccacc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       408559 228 +   2379783 gagtgatctcaattcactgcagcctctacctcctggtctcaagcagttctcccacctcagcct-ccaagtagctgggagtataggca------caccaccacccctggctaattttttgtatttttggt-agagatggcattgcgccatgttgcccagactggtcttgtactcctgagctcaaacagttcacccgccttggcctccc-aagtgctggaattacaggtgtgagccacc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       373860 227 +   4116138 gagtgatctcaattcactgcagcctctacctcttggtctcaagcagttctcccacctcagcct-ccaagtagctgggagtacaggca------caccaccacccc-agctaattttttgtatttttggt-agagatggcattgcgccatgttgcccagactggtcttgtactcctgagctcaaacagttcacctgccttggcctccc-aagtgctggaattacaggtgtgacccacc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53806122 228 +  58131712 gagtgatctcaattcactgcagcctctacctcctggtctcaagcaattctcccacctcagcct-ccaagtagctgggagtacaggca------caccaccacccctggctaattttttgcatttttggt-agagatggcattgcgccatgttgcccagactggtcttgtactcctgagctcaaacagttcacctgccttggcctccc-aagtgctggaattacaggtgtgagccacc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421750 228 -   3636681 gagtgatctcaattcactgcagcctctacctcctggtctcaagcagttctcccacctcagcct-ccaagtagctgggagtacaggca------caccaccacccctggctaattttttgtatttttggt-agagatggcgttgcgccatgttgcccagactggtcttgtactcctgagctcaaacagttcacctgccttggcctccc-aagtgctggaattacaggtgtgagccacc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       401599 228 -   4457520 gagtgatttcaattcactgcagcctctacttcctggtctcaagcagttctcccacctcagcct-ccaagtagctgggagtacaggca------caccaccacccctggctaattttttgtatttttggt-agagatggcattgcgccgtgttgcccagactggtcttgtactcctgagctcaaacaattcacctgccctggcctccc-aagtgctggaattacaggtgtgaaccacc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55215719 236 + 190850796 gaatgatctcaattcactgcaacctctacctcctggtctcaagtaattctgccacctcagcctcccaagtagctgggactaactgcaagcctgtgccaccacacctggctaattttttgtatttttgttaagagttggggttttgccatgttgcccaggctggtcttgtactcctgagctcaagcgatccccctaccttggcctccc-aagtgctgggattacaggcgtgagccacc
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       295810 235 -   2086007 gaatgatctcaatacactgcaacctctacttcctggtctcaagtaattctgccacctcagcatcccaagtagctggtactacctacaaccgtgtgctaccacatctgggtaattttttgtatttttgtt-agagttggggttttgccgtgtcgcccaggctggtcttgtactcctgagctcaagcgatctgcctaccttggcctccc-aagtgctgggattacaggcgtgagccacc
i cebCap1.NW_016107707v1    C 0 I 7428
s aotNan1.NW_018503298v1       361708 235 +   3831555 gaatgatctcaattcactgcaacctctacctcctggtctcaagtaattctgccacctcagcctcccgcgtaggtgggactacctacaagcgtgtgccaccacacctggctaattttttgtatttttgtt-agagttggggttttgccatgttgtccaggctggtcttgtactcctgaactcaagcgatccacctaccttggcctccc-aagtgctggaattacaggcgtgagccacc
i aotNan1.NW_018503298v1    I 99 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931731   0 -  91889043 C
e otoGar3.GL873689             354756   1 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=37790.000000
s hg38.chr15_KI270851v1_alt    151881 5 +    263054 atgcc
s panTro5.chr15              73724506 5 -  83230942 atgct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74028090 5 -  99763055 atgct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76917 5 -    281578 atgcc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70934480 5 + 121039945 atgcc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238791 5 - 169600520 atgcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165559603 5 - 171882078 atgcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       408787 5 +   2379783 atgcc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       374087 5 +   4116138 atgcc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53806350 5 +  58131712 atgcc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421978 5 -   3636681 atgcc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       401827 5 -   4457520 atgcc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55215955 5 + 190850796 acgcc
i calJac3.chr3              C 0 C 0
s aotNan1.NW_018503298v1       361943 5 +   3831555 acgcc
i aotNan1.NW_018503298v1    C 0 I 6850
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931731 0 -  91889043 C
e otoGar3.GL873689             354756 1 +   3845361 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=37590.000000
s hg38.chr15_KI270851v1_alt    151886 6 +    263054 cagcTT
s panTro5.chr15              73724511 6 -  83230942 cagcTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74028095 6 -  99763055 cagcTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76922 6 -    281578 cagcTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70934485 6 + 121039945 cagccT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238796 6 - 169600520 cagccT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165559608 6 - 171882078 cagccT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       408792 6 +   2379783 cagccT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       374092 6 +   4116138 cagccT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53806355 6 +  58131712 cagccT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421983 6 -   3636681 cagccT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       401832 6 -   4457520 cagccT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55215960 6 + 190850796 tggccT
i calJac3.chr3              C 0 I 6879
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931731 0 -  91889043 C
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e otoGar3.GL873689             354756 1 +   3845361 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=-168.000000
s hg38.chr15_KI270851v1_alt    151892 4 +    263054 TCT-G
s panTro5.chr15              73724517 4 -  83230942 Tct-g
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74028101 4 -  99763055 Tct-g
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76928 4 -    281578 TCT-G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70934491 4 + 121039945 Tct-g
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238802 3 - 169600520 TCT--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165559614 3 - 171882078 TCT--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       408798 3 +   2379783 TCT--
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       374098 3 +   4116138 TCT--
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53806361 3 +  58131712 TCT--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421989 3 -   3636681 TCT--
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       401838 4 -   4457520 TCTG-
i colAng1.NW_012115278v1    C 0 I 8766
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931731 0 -  91889043 C
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e otoGar3.GL873689             354756 1 +   3845361 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55215966 6879 + 190850796 I

a score=593701.000000
s hg38.chr15_KI270851v1_alt    151896 127 +    263054 GCCAATTTTA-CAA-Tttttttgtagagacagggtcttgctatgttgcttagattggttttgaactcctgggcacaagtgattctcttgcctcagtcttccaaggtgctgggattagagatgtgagtca
s panTro5.chr15              73724521 127 -  83230942 gctaatttta-caa-tttttttgtagagacagggtcttgctatgttgcctagattggttttaaactcctgggcacaagtgattctcttgcctcagtcttccaaggtgctgggattagagatgtgagtca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74028105 127 -  99763055 gctaatttta-caa-tttttttgtagagacagggtcttgctatgttgcctagattggttttaaactcctgggcacaagtgattctcttgcctcagtcttccaaggtgctgggattagagatgtgagtca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        76932 126 -    281578 GCTAATTTTA-CAA-ttttttt-tagagacagggtcttgctatgttgcctagattggttttaaactcctgggcacaagtgattctcttgcctcagtcttccaaggtgctgggattagagatgtgagtca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70934495 125 + 121039945 gctaattt---aaa-tttttttgtagagacagggtcttcctatgttgcctagattggttttgaacccctgggcacaagtgattctcttgcctcagtcttccaaggtgctgggattagagatgtgagtca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238805 128 - 169600520 gctaattttt-aaattttttttgtagagacagggtcttgctatgttgcctagattggttttgaatgcctgggcgcaagtgattctcttgcctcagttttccaaggtgctgggattagagatgtgagtca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165559617 127 - 171882078 gctaattttt-aaa-tttttttgtagagacagggtcttgctatgttgcctagattggttttgaatgcctgggcgcaagtgattctcttgcctcagttttccaaggtgctgggattagagatgtgagtca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       408801 127 +   2379783 gctaattttt-aaa-tttttttgtagagacagggtcttgctatgttgcctagattggttttgaatgcctgggcgcaagtgattctcttgcctcagttttccaaggtgctgggattagagatgtgagtca
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       374101 127 +   4116138 gctaattttt-aaa-tttttttgtagagacagggtcttgctatgttgtctagattggttttgaatgcctgggcgcaagtgattctcttgcctcagttttccaaggtgctgggattacagatgtgagtca
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53806364 127 +  58131712 gctaattttt-aat-tttttttgtagagacagggtcttgttatgttgcctagattggttttgaatgcctgggcgcaagtgattctcttgcctcagttttccaaggtgctgggattagaggtgtgagtca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       421992 128 -   3636681 gctaatttttaaat-tttttttgtagagacagggtcttgctatgttgcctagattggttttgaatgcctgggtgcaagtgattctcttgcctcagttttccaaggtgctgggattagagatgtgagtca
i manLeu1.NW_012102332v1    C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931731   0 -  91889043 C
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e otoGar3.GL873689             354756   1 +   3845361 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e colAng1.NW_012115278v1       401842 8766 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55215966 6879 + 190850796 I

a score=64495.000000
s hg38.chr15_KI270851v1_alt    152023 15 +    263054 ctctatctggccAGG
s panTro5.chr15              73724648 15 -  83230942 ctctacctggcTAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74028232 15 -  99763055 ctctacctggcTAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        77058 15 -    281578 ctctacctggcTAGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70934620 15 + 121039945 ctatacctggccAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238933 15 - 169600520 ctatacctggtcAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165559744 15 - 171882078 ctatacctggtcAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       408928 15 +   2379783 ctatacctggtcAGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       374228 15 +   4116138 ctatatctggccAGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53806491 15 +  58131712 ctatacctggccAGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       422120 15 -   3636681 ctatacctggccAGG
i manLeu1.NW_012102332v1    C 0 C 0
s otoGar3.GL873689             354757 15 +   3845361 CCCTGACTGCTCACA
i otoGar3.GL873689          I 1 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434028 414 +  16154928 I
e canFam3.chr3               59931731  0 -  91889043 C
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e colAng1.NW_012115278v1       401842 8766 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55215966 6879 + 190850796 I

a score=148884.000000
s hg38.chr15_KI270851v1_alt    152038 22 +    263054 GCTCACTTTTTAGGAAGGAGTT
s panTro5.chr15              73724663 22 -  83230942 GCTCACTTTTTAGGAAGGAGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74028247 22 -  99763055 GCTCACTTTTTAGGAAGGAGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        77073 22 -    281578 GCTCACTTTTTAGGAAGGAGTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70934635 22 + 121039945 GCTCACTTTTTAGGAAGGAGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238948 22 - 169600520 GCTCACTTTTTAGGAAGGAGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165559759 22 - 171882078 GCTCACTTTTTAGGAAGGAGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       408943 22 +   2379783 GCTCACTTTTTAGGAAGAAGTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       374243 22 +   4116138 GCTCACTTTTTAGGAAGGAGTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53806506 22 +  58131712 GCTCACTTTTTAGGAAGGAGTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       422135 22 -   3636681 GCTCGCTTTTTAGGAAGGAGTT
i manLeu1.NW_012102332v1    C 0 C 0
s proCoq1.NW_012148396v1     13434442 22 +  16154928 GCTCAGTTTTTAAGAAGGAGTT
i proCoq1.NW_012148396v1    I 414 C 0
s otoGar3.GL873689             354772 22 +   3845361 GCTTAGTTTTTAGGAAGGCGTT
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e canFam3.chr3               59931731  0 -  91889043 C
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e colAng1.NW_012115278v1       401842 8766 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55215966 6879 + 190850796 I

a score=1945479.000000
s hg38.chr15_KI270851v1_alt    152060 310 +    263054 TACCTCTCCCCC-ACCAGCTGATA-TTTTTACCAAAAGTCATATGTTTTGGTTCCAAGTATGTTTATGGCAGTTATCCTGTTAGTGATGTGAACAGAAAAAATAACAGTGCTGAGGGAAAGCTGTTCCTTCTACAAAAACTGAA--GGATGCTGGCTTGGtttctgtcgctacagaacaagttaccaaacacaaatttggcagcttgtaacaacaagcatttacactctcacagtttctgtggg-tcaggagtctggccatagcttagttctatcctctacttcaggtgtcac-aggc----tgtagtcaaggtgttggc
s panTro5.chr15              73724685 311 -  83230942 TACCTCTCCCCC-ACCAGCTGATAATTTTTACCAAAAGTCATATGTTTTGGTTCCAAGTATGTTTATGGCAGTTATCCTGTTAGTGATGTGAACAGAAAAAATAAGAGTGCTGAGAGAAAGCTGTTCCTTCTACAAAAACTGAA--GGATGCTGGCTTGGtttctgtcgctgcagaacaagttaccaaacacaaatttggcagcttgtaacaacaagcatttacactctcacagtttctgtggg-tcaggagtctggccatagcttagttctgtcctctacttcaggtgtcac-aggc----tgtagtcaaggtgttggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74028269 311 -  99763055 TACCTCTCCCCC-ACCAGCTGATAATTTTTACCAAAAGTCATATGTTTTGGTTCTAAGTATGTTTATGGCAGTTATCCTGTTAGTGATGTGAACAGAAAAAATAAGAGTGCTGAGAGAAAGCTGTTCCTTCTACAAAAACTGAA--GGATGCTGGCTTGGtttctgtcgctgcagaacaagttaccaaacacaaatttggcagcttgtaacaacaagcatttacactctcacagtttctgtggg-tcaggagtctggccatagcttagttctatcctctacttcaggtgtcac-aggc----tgtagtcaaggtgttggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        77095 311 -    281578 TACCTCTCCCCC-ACCAGCTGATAATTTTTACCAAAAGTCATATGTTTTGGTTCCAAGTATGTTTATGGCAGTTATCCTGTTAGTGATGTGAACAGAAAAAATAAGAGTGCTGAGAGAAAGCTGTTCCTTCTACAAAAACTGAA--GGATGCTGGCTTGGtttctgtcgctacagaacaagttaccaaacacaaatttggcagcttgtaacaacaagcatttacactctcacagcttctgtggg-tcaggagtctggccatagcttagttctatcctctacttcaggtgtcac-aggc----tgtagtcaaggtgttggc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70934657 311 + 121039945 TACCTCTCCCCC-ACCAGCTGATA-TTTTTACCAAAAGTCATACGTTTTGGTTCCAAGTATGTTTATGGCAGTTATCCTGTTAGTGATCTGAACAGAAAAAATAAGAGTGCTGAGAGAAAGCTGTTCCTTCTACAAAAACTGAA--GGATGCTGGCTTGGtttctgtcgctacagaacaagttaccaaccacaaatttgacagcttgtaacaacacgcatttacactctcacagtttctgtggg-tcaggagtctggccatagcttagttcaatcctctacttcaggtgtcacaaggc----tgtagtcaaggtgttggc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164238970 310 - 169600520 TATCTCTCCCCC-ACCAGCTGATA-TTTTTACCAAAAGTCATATGTTTTGGTTCCAAGTATGTTTATGGCAGTTATCCTGTTAGTGATGTGAAGAGAAAAAATAAGAGTGCTGAGAGAAAGCTTTTCCTTCGACAAAAACTGAA--GAATGCTGGCttggtttctgtcattacagaa-aagttaccaaccacaaatttggcagcttgtaacagcatgcatttatactctcacagtttgtctggg-tcaggagtctggccatagcttagttccatcctctacttcgggtgtcacaaggc----tgtagtcaaggtgttagc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165559781 310 - 171882078 TATCTCTccccc-accagctgata-tttttaccaaaagtcatatgttttggttccaagtatgtttatggcagttatcctgttagtgATATGAAGAGAAAAAATAAGAGTGCTGAGAGAAAGCTTTTCCTTCGACAAAAACTGAA--GAATGCTGGCttggtttctgtcattacagaa-aagttaccaaccacaaatttggcagcttgtaacagcatgcatttatactctcacagtttgtctggg-tcaggagtctggccatagcttagttccatcctctacttcgggtgtcacaaggc----tgtagtcaaggtgttagc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       408965 310 +   2379783 TATCTCTCCCCC-ACCAGCTGATA-TTTTTACCAAAAGTCATATGTTTTGGTTCCAAGTATGTTTATGGCAGTTATCCTGTTAGTGATGTGAAGAGAAAAAATAAGAGTGCTGAGAGAAAGCTTTTCCTTCGACAAAAACTGAA--GAATGCTGGCttggtttctgtcattacagaa-aagttaccaaccacaaatttggcagcttgtaacagcatgcatttatactctcacagtttgtctggg-tcaggagtctggccatagcttagttccatcctctacttcgggtgtcacaaggc----tgtagtcaaggtgtcagc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       374265 310 +   4116138 TGTATCTCCCCC-ACCAGCTGATA-TTTTTACCAAAAGTCATATGTTTTGGTTCCAAGTATGTTTATGGCAGTTATCCTGTTAGTGATGTGGAGAGAAAAAATAAGAGTGCTGAGAGAAAGGTTTTCCTTCGACAAAAACTGAA--GAATGCTGGCttggtttctgtcattacagaa-aagttaccaaccacaaatttggcagcttgtaacagcatgcatttatactctcacagtttgtctggg-tcaggagtctggccatagcttagttccatcctctactttgggtgtcacaaggc----tgtagtcaaggtgtcggc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53806528 310 +  58131712 TATCTCTccccc-accagctgata-tttttaccaaaagtcatatgttttggttccaagtatgtttatggcagttatcctgttagtgATGTGAAGAGAAAAAATAAGAGTGCTGAGAGAAAGCTTTTCCTTCGACAAAAACTGAA--GAATGCTGGCttggtttctgtcattacagaa-aagttaccaaccacaaatttggcagcttataacagcatgcatttatactctcacagtttgtctggg-tcaggagtctggccatagcttagttccatcctctacttcgggtgtcacaaggc----tgtagtcaaggtgtcggc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       422157 310 -   3636681 TATCTCTCCCCC-ACCAGCTGATA-TTTTTACCAAAAGTCATATGTTTTGGTTCCAAGTATGTTTATGGCAGTTATCCTGTTAGTGATGTGAAGAGAAAAAATAAGAGTGCTGAGAGAAAGCTTTTCCTTCGACAAATACTGAA--GAATGCTGGCttggtttctgtcattacagaa-aagttaccaaccacatatttggcagcttgtaacagcatgcatttatactctcacagttggtctggg-tcaggagtctggccatagcttagttccatcctctacttcgggtgtcacaaggc----tgtagtcaaggtgtcggc
i manLeu1.NW_012102332v1    C 0 C 0
s proCoq1.NW_012148396v1     13434464 309 +  16154928 TACCTCTCCCCCTGTTTGCCGGTA-CTTTTGCCAAGAGTCCTATGTTTTGATTCCAAGTATGTTTATGGGAGTTGTCTTGTTAGTGATGTG-acaggtgaaataggagtgctgagggaaagctgttgcttctacaaaaacttaa--gtaggatgcttagttttccattgctgtgaaacaagtcactaaccacaaattta-caacttaaaacaacgtacttttacactcttacagtttctgtgag-tcaggagtctggccggggcttagctcagtcctctgctttgggtatca-caggc----tgcagtcaaggcgttggc
i proCoq1.NW_012148396v1    C 0 I 1692
s otoGar3.GL873689             354794 299 +   3845361 TACCTCTCTTTCTGTCACCTGGTA-CTTCTGCCAAGAGTCCTGTGTTTTAGTTCCAAGTATGTTTATGTGAGTTACCTTGTTAGTGATGTG-ACACATTAAATAGGAGTGCTGAGATAAGAC--TTGCTTCTACAAAAAA-GAA--TTTGGGCGCttagttttcgattgctatgtaacaggt---taaccacgaatttagcaggttttacctacg------tatgctcttatagtttctgtggg-tcagggatctggctggggtatagctcagtcctttgctttgggtttcaggaggc----tgtagtccagttgtgggc
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59931731 299 -  91889043 TACTTTTCCCCCTGCCAGGTGATA-CTTTTATCAAAAGTC--ATGTTTTAGTTTTAAGTATGTTTATGGCAGTTACCTTGTTAG---------GCGAACaaataagagtgctgaaagaaagctgttgcttctatgaaaactaagttggatgctgattgg--ttctgttgctatgttataaattac----cacaaatttagcaacttaaaacaactcatgtttat--tcttccagtttctgtgggatcagaagtttggacaaggcttagctgggtcctctgccttgagtctagc-aggctctatgcagtcagggtgtcagc
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e colAng1.NW_012115278v1       401842 8766 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55215966 6879 + 190850796 I

a score=164457.000000
s hg38.chr15_KI270851v1_alt    152370 30 +    263054 --tagggcacgctgtcatctggagctc-----aggtc
s panTro5.chr15              73724996 30 -  83230942 --tagggcacgctgtcatctggagctc-----aggtc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74028580 30 -  99763055 --tagggcacgctgtcatctggagctc-----aggtc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        77406 30 -    281578 --tagggcacgctgtcatctggagctc-----aggtc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70934968 30 + 121039945 --tagggcacgctgtcatctggagctg-----aggtc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164239280 30 - 169600520 --tagggcatgctgtcatctggagccc-----aggtc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165560091 30 - 171882078 --tagggcatgctgtcatctggagccc-----aggtc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       409275 30 +   2379783 --tagggcatgctgtcatctggagccc-----aggtc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       374575 30 +   4116138 --tagggcatgctgtcatctggagccc-----aggtc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53806838 30 +  58131712 --tagggcatgctgccatctggagccc-----aggtc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       422467 30 -   3636681 --tagggcatgctgtcatctggagccc-----aggtc
i manLeu1.NW_012102332v1    C 0 C 0
s otoGar3.GL873689             355093 30 +   3845361 --tgagccactccctattctggagctt-----gggtc
i otoGar3.GL873689          C 0 I 306
s canFam3.chr3               59932030 37 -  91889043 catgctgtgtgctctcacctggggtctcattggggtc
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434773 1692 +  16154928 I
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e colAng1.NW_012115278v1       401842 8766 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55215966 6879 + 190850796 I

a score=654118.000000
s hg38.chr15_KI270851v1_alt    152400 128 +    263054 ctcattggtagaattgaatccattgtggttgtgggactgaaaccctgggctcttggaggctgcccctccccacaggcagttcattggctgcttgcttcttcagattg--gagaccatctctTCAGGACAG
s panTro5.chr15              73725026 128 -  83230942 ctcattggtagagttggatccattgtggttgtgggactgaaaccctgggctcttggaggctgcccctccccacaggcagttcattggctgcttgcttcttcaaattg--aagaccatctctTCAGGACGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74028610 128 -  99763055 ctcattggtagagttggatccattgtggttgtgggactgaaaccctgggctcttggaggctgcccctccccacaggcagttcattggctgcttgcttcttcaaattg--aagaccatctctTCAGGACGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        77436 128 -    281578 ctcattggtagagttggatccattgtggttgtgggactgaaaccctgggctcttggaggctgcccctccccacaggcagttcattgactgcttgcttcttcaaattg--gagaccatctctTCAGGACGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70934998 128 + 121039945 ctcattggtagaattggatccatcgtggttgtaggactgaaatcctgggctcctggaggctgccccttcccacaggcggttcattggctgcttgcttcttcaaattg--gagaccatctctTCAGGACGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164239310 128 - 169600520 ctcactggtagaagtgggtccatcatggttgtggaactgaagccctgggctcttggaggccgcccctccccacaggcagttcactggctgcttgcttcttcaaattg--gagaccatctcCTCAGGATGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165560121 128 - 171882078 ctcactggtagaagtgggtccatcatggttgtggaactgaagccctgggctcttggaggccgcccctccccacaggcagttcactggctgcttgcttcttcaaattg--gagaccatctcCTCAGGATGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       409305 128 +   2379783 ctcactggtagaagtgggtccatcatggttgtggaactgaagccctgggctcttggaggccgcccctccccacaggcagttcactggctgcttgcttcttcaaattg--gagaccatctcCTCAGGATGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       374605 128 +   4116138 ctcattggtagaagtgggtccatcatggttgtggaactgaagccctgggctcttggaggccgcccctccccacaggcagttcactggctgcttgcttcttcaaattg--gagaccatctcCTCAGGATGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53806868 128 +  58131712 ctcattggtagaagtgggtctatcatggctgtggaactgaagccctgggctcttggaggccgcccctccccacaggcagttcactggctgcttgcttcttcaaattg--gagaccatctcCTCAGGATGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       422497 128 -   3636681 ctcattggtagaagtgggtccatcatggttgtggaactgaagccctgggctcttggaggccgcccctccccacaggcagttcactggctgcttgcttcttcaaattg--gagaccatctcCTCAGGATGA
i manLeu1.NW_012102332v1    C 0 C 0
s canFam3.chr3               59932067 129 -  91889043 ctctttggcagaatttagttccttgcagttggagacctg-agtcatggtctcctagatgctgcccctctgcatatgtagttcatggcatctcacctttttttgactgtagagaatgtctcttctggatgg
i canFam3.chr3              C 0 I 759
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434773 1692 +  16154928 I
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e otoGar3.GL873689             355123 306 +   3845361 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e colAng1.NW_012115278v1       401842 8766 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55215966 6879 + 190850796 I

a score=1690520.000000
s hg38.chr15_KI270851v1_alt    152528 362 +    263054 TGCagagggatggaaaaagggagaggcaaatggaaatcacaaaagagcatagcggttatatcagaccaaatagatttcaagaccaaaactataaaaggagaccaaaaaagtcattatgtaatgataaaggggccaattcagcaagaggctataactattataaatatatgtatatatgcactcaacactagagcacccagatacataaaacaaatattacagctaaagagagagagaggcgttaatacattaatagatggaggcttcaacactccactt-cagcattggacagatcagatcatccagacaaaattaacgaagaaacatcaaacttaatctgcactgtagaccaaatggattta
s panTro5.chr15              73725154 363 -  83230942 TGCGGGgggatggaaaaagggagaggcaaatggaaatcaaaaaagagcatagtggttatatcagaccaaatagatttcaagaccaaaactataaaaggagaccaaaaaagtcattatgtaatgataaaggggccaattcagcaagaggctataactattataaatatatgtatatatgcactcaacactagagcacccagatacataaaacaaatattacagctaaagagagagataggccttaatacattaatagatggaggcttcaacactccactttcagcattggacagatcagatcatccagacaaaattaacgaagaaacatcatacttaatctgcactgtagaccaaatggattta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74028738 363 -  99763055 TGCGGGgggatggaaaaagggagaggcaaatggaaatcaaaaaagagcatagtggttatatcagaccaaatagatttcaagaccaaaactataaaaggagaccaaaaaagtcattatgtaatgataaaggggccaattcagcaagaggctataactattataaatatatgtatatatgcactcaacactagagcacccagatacataaaacaaatattacagctaaagagagagataggccttaatacattaatagatggaggcttcaacactccactttcagcattggacagatcagatcatccagacaaaattaacgaagaaacatcaaacttaatctgcactgtagaccaaatggattta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        77564 363 -    281578 TGCAGGgggatggaaaaagggagaggcaaatggaaatcaaaaaagagcatagtggttatatcagaccaaatagatttcaagaccaaaactataaaaggagaccaaaaaagtcattatgtaatgataaaggggccaattcagcaagaggctataactattataaatatatgtatatatgcactcaacactagagcacccagatacataaaacaaatattacagctaaagagagagataggccttaatacattaatagatggaggcttcaacactccactttcagcattggacagatcagatcatccagacaaaattaacgaagaaacatcaaacttaatctgcactgtagaccaaatggattta
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70935126 358 + 121039945 TGCAGGgggatggaaaaagggagaagcaaatggaaataaaaaaaaagcatggtggttatatcagaccaaatagatttcaagaccaaaactataaaaggagaccaaaaaggtcattatgtaatgataaaggggccaattcagcaagatgctgtaactattataaatatatgtgtatatgcactcaacacgagagcactcagatacataaaacaagtgttacagctaaagagagagataggccttaatacattaatagatggaggcttcaacactccactttcagcattgga-----cagatcatccagacaaaattaacgaagaaacatcaaacttaatctgcactgtagaccaaatggattta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164239438 353 - 169600520 CGCAGGgggatggaaaaagggagaggcaaatggaaatcaaaaaacagcatagtagttatatcagaccaaatagatttcaagacagaaactataaaaggagaccaaaaaagtcattatgtaatgataaaggggccatttcagcaagaggctataactattgtaaatatatgtatatatgcactcaacactagagcccccagatacataaa-----tattagagctaaagagagagagaggccttaatacgttaatagatggaggctttaacactccgctttcagcattgga-----cagatcatccagacaaaattaacaaagaaacatcaaacttaatctgccctatagaccaaatggattta
i rheMac8.chr7              C 0 I 6526
s macFas5.chr7              165560249 353 - 171882078 CGCAGGgggatggaaaaagggagaggcaaatggaaatcaaaaaacagcatagtagttatatcagaccaaatagatttcaagacagaaactataaaaggagaccaaaaaagtcattatgtaatgataaaggggccatttcagcaagaggctataactattgtaaatatatgtatatatgcactcaacactagagcccccagatacataaa-----tattagagctaaagagagagagaggccttaatacgttaatagatggaggctttaacactccgctttcagcattgga-----cagatcatccagacaaaattaacgaagaaacatcaaacttaatctgccctatagaccaaatggattta
i macFas5.chr7              C 0 I 6522
s macNem1.NW_012011934v1       409433 353 +   2379783 CGCAGGgggatggaaaaagggagaggcaaatggaaatcaaaaaacagcatagtagttatatcagaccaaatagatttcaagacagaaactataaaaggagaccaaaaaagtcattatgtaatgataaaggggccatttcagcaagaggctataactattgtaaatatatgtatatatgcactcaacactagagcccccggatacataaa-----tattagagctaaagagagagagaggccttaatacgttaatagatggaggctttaacactccgctttcagcattgga-----cagatcatccagacaaaattaacgaagaaacatcaaacttaatctgccctatagaccaaatggattta
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       374733 353 +   4116138 CGCAGGgggatggaaaaagggagaggcaaatggaaatcaaaaaacagcatagtagttatatcagaccaaatagatttcaagacagaaactataaaaggagaccaaaaaagtcattatgtaatgataaaggggccatttcagcaagaggctataactattgtaaatatatgtatatatgcactcaacactagagcacccagatacataaa-----tattagagctaaagagagagagaggccttaatacgttaatagatggaggctttaacactccgctttcagcattgga-----cagatcatccagacaaaattaacgaagaaacatcaaacttaatctgccctatagaccaaatggattta
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53806996 353 +  58131712 CGCAGGgggatggaaaaagggagaggcaaatggaaatcaaaaaatagcatagtagttatatcagaccaaatagatttcaagacagaaactataaaaggagaccaaaaaagtcattatgtaatgataaaggggccatttcagcaagaggctataactattgtaaatatatgtatatatgcactcaacactagagcacccggatacataaa-----tattagagctaaagagagagagaggccttaatacgttaatagatagaggctttaacactccgctttcagcattgga-----cagatcatccagacaaaattaacgaagaaacatcaaacttaatctgccctatagaccaaatggattta
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       422625 353 -   3636681 CGCAGGgggatggaaaaagggagaggcaaatggaaatcaaaaaacagcatagtagttatgtcagaccaaatagatttcaagacaggaactataaaaggagaccaaaaaagtcattatgtaatgataaaggggccatttcagcaagaggctataactattgtaaatatatgtatatatgcactcaacactagagcacccggatacataaa-----tattagagctaaagagagagagaggccttaatacgttaatagatggaggctttaacactccgctttcagcattgga-----cagatcatccagacaaaattaacgaagaaacatcaaacttaatctgccctatagaccaaatggattta
i manLeu1.NW_012102332v1    C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434773 1692 +  16154928 I
e canFam3.chr3               59932196 759 -  91889043 I
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e otoGar3.GL873689             355123 306 +   3845361 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e colAng1.NW_012115278v1       401842 8766 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55215966 6879 + 190850796 I

a score=10806181.000000
s hg38.chr15_KI270851v1_alt    152890 3591 +    263054 atagatatttctagaacatttca-tctgatggctgcagaatttacattgttctctttagcacatggatcgtcctcaaggttagaccatatgttaggccacaaaataagtcattaaaaattgaaaccttgatactaaaagcagacaaagacacgtcaaagaaagaatactacaggccaatgtctctgatgaatattgatgcaaatatcctcaacaaaatactagcaaaccaaattcagcaatacgttagaaagatcgttcattgtgatgaagtggggtttatccctggggtacaaggatggttcaacatatgcaaatcaatcgatgtgacacatcatgtcaacagaaggataaaaaccatgtgattatttcagtcgatgctgaaaaggcatttgataaaattcaacatcctttcatgat-aaaatctcttaaaactgattatggaagaaacatacctcaacataataaaagccgtatatgacagacccacagctagtatcatactgaatggtgaaaaactgaaagtctttcctctaagatctggaacatgacaaggatgctcagtgtggccaccgttattcaacatagtactggaagttcttgctagagcaatcagacaagagaaagaaataaaaggcctccacattggaaaggaagaagtcaaattatccttg-tttgcagatgatatgatcttatatgtggaaaaacctaaagactccacaagaaaatgattagagctgataaattcagtacagttgcagtatacgaaatcaacatacaaaaatcagtagcatttctgtgtgccaacagtaaacaatatgaaaaa--aattagaaaactaatcccatttatagtagccacacatgaaattaagtacctgggaagtaaccaaagaagataattacaaagatctctgtaatgaaaactctaaaaccctgatgaaagacattaaagaggacacaaaagatggaaaaatatttcatcttcatggatcggaagaatcaatattgttaaaatgtccatactacccaaagcaatctaccgattgagtgcaatccctagcaaaataccaatgacattcttcacaga---aaca--gaaaaaaaaaaaatcctaaaattcatgttgaaccacaaaagacccagaatagccgaagctctcgtaattaaaaagaaacaaactggaggaatcagattacctgacttcaaattatactacagagctatagtaaccaaaacagcatagtactagcataaaa-cagacac--agaccaacggaacagaatagagaatccagaaacaaatccgcacatctacggtgaactcattttcgacaaaggtaccaagaacaaacactggggaaaagacaatctcttcaataaatggtgttgggaaaacttgatattcatatgcagaagaatgaagctagattcc--tcttttgccatataaaagttaaaaaaattatgttaagtatcttctctgatcacaatggactataactaaaaatcaataacgaggaattttggaaactccaccaacacatgggaattaaacaatatgctcctgaatgaccaacaggtcagtgaagaaattaagaatgaaattaaacaatttcttgaagcaaatggcaatggcagcacagcatacgaaacctgtgggatatagtgaaagcaatactaagagga----------------------aaatcaaaaaagtagaaaaacttcaaataaataacctaatgatacatcttaaagaactagaaatgaaggagctaaccaaacccataattttaaggacagaaataataaaaattagagcagaaataaaatggagttgaaatgaagaaaataatacaaaagatcaatgaaatgaaaagttggtttttctaaaagat-----aaattgacaagctttcaggcaggctaagagaaaaagaagaccc-----aaatcagaggtgaaaaagtaggcattacaactgatattgcagaaattcaaagggtcattagagactatgaacagctatatgtcaataaattgggaaacgtggaagaaatagataagtttgcaggctgggcgtggtggctcatacctgtaatcccagcaccttgggaggctgaggcgggtggatcgcttgaggtcaggagtttgagaccagtctggccaacatggtgaaactccatctctactaaaaatacaaaaattaaccaggtgtggttttgcgtgcctgtaattccagccacttggaaggctgaggcacgagagtcacttgagccctgggagggggaggttgcagtgtgctgagatcatgttactgcactccaccctgggtgaaagagtgagactgtgtctt--------------caaaaaa---------agaaggaaaaagaaatggataatttcacaggcacatacagccttccaagtttgaaccatgaagaaatccagaacctgaacataccaataacaggtaatgagattgaaactgtaataataaaaagtcttccagcaaagaaaaaccccaggacccagtgacttcactgctgaattttaccaaacatttaaagaagaactattaccaatcctagtgaaactattctgaaaaatagaggaggagggaatacttccaaacttattgtagaaggcc-aatattaccctgataccaaaaccagacaaagacataatcaaaaaaacaaaacaggccagtatcccagatgaacattgatgc-agaaatacccaacaaaataccagcaaaccgaattcaacaacacattagaaacatcgttcatcatgaccaaagtggggtttatcccagggatgccaggatggttcaccatatccaaatcaatcagtttgatacatcatatcaatagaatgaaggataaaaaaccatatgatcatttaaattcatgctgaaaaggcatttgataaaattcaacatcctttcatgataaaaacccc-aaaaaactggttatagaaggaacacacctcaacgcaataaaagccatatacaactgacacacagctagtatcatac---tgaaaggtgaaaaactgaaagcctttcctctaagatctggaacaagacacggatgcccactgtcaccactgttattcaatataataatggaagcccttgctacaggagtcagataagagagag----aaaggccgggtgcagtggctcacacctgtaatcccagcactttgggaggctgaggtgagtggatcacttgaggtcaggagtttga----agcctggccaacacggtgataccctatctctactaaaaatataaaaattagctaggcgtggtggcgggtgtctgttgtcccagctactcgggaggctgaggcagggaaatcacttgaaccccagaggtggagattgcagtgagctgagattgtgccgctgtattccagcct-gggctatggagcaagactccatctcag-aaaaaaaaaaaa--aaaga----------agaagaaataaagggcatccaaattggaaatgaagatgccaagttactcttgtttgcagatgattgttgtatttggaaaaacctaaaaactccaccaaaaaatgattagaactgataaattcagtaaaattgcaggatactaaattaacatacaaaaatcagtagcatttctctctct-------ctttttttt----
s panTro5.chr15              73725517 3594 -  83230942 atagatatttctagaacatttca-tctgatggctgcagaatttacattgttctctttagcacatggatcgtcctcaaggttagaccgtatgttaggccacaaaataagtcattaaaaattcaaaccttgatactaaaagcagacaaagacacatcaaggaaagaatactacaggccaatgtctctgatgaatattgatgcaaatatcctcaacaaaatactagcaaaccaaattcagcaatacgttagaaagattgttcattgtgaccaagtggggtttatccctggagtacaaggatggttcaacatatgcaaatcaattgatgtgatacatcatgtcaacagaaggataaaaaccatgtgattatttcaattgatgctgaaaaggcatttgataaaattccacatcctttcatgat-aaaatctcttaaaactggttatggaagaaacatacctcaacataataaaagccgtatatgacagacccacagctagtatcatactgaatggtgaaaaactgaaagtctttcctctaagatctggaacatgacaaggatgctcattgtggccaccgttattcaacatagtactggaagttcttgctagagcaatcagacaagagaaagaaataaaaggcctccacattggaaaggaagaagtcaaattatccttg-tttgcagatgatatgatcttatatttggaaaaacctaaagactccacaagaaaatgattagagccgataaattcaatacaattgcagtatacgaaatcaacatacaaaaatcagtagcatttctgtgtgccaacagtaaacaatatgaaaaagaaattagaaaagtaatcccatttatagtagccacacatgaaattaaatacctgggaagtaaccaaaaaagataattacaaagatctctgtaatgaaaactctaaaacgctgatgaaagacattaaagaggacacaaaagatggaaaaatatttcatcttcatggattggaagaatcaatattgttaaaatgtccatactacccaaagcaatctaccgattcagtgcaatccctagcaaaataccaatgacatttttcacaga---aaca--gaaaaaaaaaaa-tcctaaaattcatgttgaactacaaaagacccagaatagccgaagctctcataattgaaaagaaacaaactggaggaatcagattacctgacttcaaattatactacagagctatagtaatgaaaacagcatagtactagcataaaaacagacac--agaccaacgaaacagaatagagaatccagaaacaaatccacacatctacggtgaactcattttcgacaaaggtaccaagaacatacactggggaaaagacaatctcttcaataaatggtgctgggaaaacttgatattcatatgcagaagaatgaagctagattcc--tcttttgccatataaaagttaaaaaaattatgttaagtatcttctctgatcaca-tggactgtaactaaaaattgataacgaggaattttggaaactccaccaacacatgggaattaaacaatatgctcctgaatgaccaacaggtcagtgaagaaattaagaatgaaattaaa--gtttcttgaaacaaatggcaatggcaacacagcatacgaaatctgtgggatatagtgaaagcagtactaagagga----------------------aaatcaaaaaagtagaaaaacttcaaataaataacctaatgatacatcttaaagaactagaaaagaaggagctaaccaaacccataattttaaggacagaaataataaaaattagagcagaaataaaatggagttgaaatgaagaaaataatacaaaagatcaatgaaatgaaaagttggtttttctaaaagat-----aaattgacaagccttcaggcaggctaagagaaaaagaagaccc-----aaatcagaggtgaaaaagtaggcattacaactgatattgcagaaactcaaagggtcattagagactacgaacagctatatgtcaataaattgggaaacgtggaagaaataggtaagtttgcaggccgggcgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcgagtgggtcacttgaggtcaggagttcgagaccagtctggccaacatggtgaaactccatctctactaaaaatacaaacattaaccaggtgtggttttgcgtgcctgtaattccagccacttggaaggctgaggcacgagaatcacttgagcc-tgggaggtggaggttgcagtgtgctgagatcatgttactgcactccagcctgggtgacagagtgagactgtgtctt--------------caaaaca---------agaaggaaaaagaaatggataatttcacaggcacatacagccttccaagtttgaaccatgaagaaatccagaacctgaacataccaataacaggtaatgagattgaaactgtaataataaaaagtctcccagcaaagaaaaaccccaggacccggtgacttcactgctgaattttaccaaacatttaaagaagaactattaccaatcctagtgaaactattctgaaaaatagaggaggagggaatacttccaaacttattgtagaaggcc-aatattaccctgataccaaaaccagacaaagacataatcaaaaaaacaaaacaggccagtatcccagatgaacattgatgc-agaaatacccaacaaaataccagcaaaccgaattcaacaacacattaaaaacatcattcatcatgaccaaagtgcggtttatcccagggatgccaggatggttcaccatatccaaatcaatgagtttgatacatcatatcaatagaatgaaggataaaaaaccatgtgatcatttaaattcatgctgaaaaggcatttgataaaattcaacatcctttcatgataaaaacccccaaaaaactggttatagaaggaacacacctcaacgcaataaaagccatatacaactgacacacagctagtatcatac---tgaaaggtgaaaaactgaaagcctttcctctaagatctggaacaagacaaggatgcccactgtcaccactgttattcaatataataatggaagcccttgctagaggagtcagataagagagag----aaaggccgggtgcagtggctcacacctgtaatcccagcactttgggaggctgaggtgagtggatcacttgaggtcaggagtttga----agcctggccaacatggtgataccctgtctctactaaaaatataaaaattagctaggcgtggtggcgggtgtctgttgtcccagctactcgggaggctgaggcagggaaatcacttgaaccccggaggtggagattgcagtgagctgagattgtgctgctatattccagcct-gggctatggagcaagactccatctcag-aaaaaaaaaaaa--aaaga----------agaa---ataaagggcatccaaattggaaatgaagatgccaagttattcttgtttgcagatgattgttatgtttggaaaaacctaaaaactccaccaaaaaatgattagaactgataaattcagtaaaattgcaggatactaaattaacatacaaaaatcagtagcatttctctctctgttttttttttttttt----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74029101 3579 -  99763055 atagatatttctagaacatttca-tctgatggctgcagaatttacattgttctctttagcacatggatcgtcctcaaggttagaccgtatgttaggccacaaaataagtcattaaaaattcaaaccttgatactaaaagcagacaaagacacatcaaggaaagaatactacaggccaatgtctctgatgaatattgatgcaaatatcctcaacaaaatactagcaaaccaaattcagcaatacgttagaaagattgttcattgtgaccaagtggggtttatccctggagtacaaggatggttcaacatatgcaaatcaattgatgtgatacatcatgtcaacagaaggataaaaaccatgtgattatttcaattgatgctgaaaaggcatttgataaaattccacatcctttcatgat-aaaatctcttaaaactggttatggaagaaacatacctcaacataataaaagccgtatatgacagacccacagctagtatcatactgaatggtgaaaaactgaaagtctttcctctaagatctggaacatgacaaggatgctcagtgtggccaccgttattcaacatagtactggaagttcttgctagagcaatcagacaagagaaagaaataaaaggcctccacattggaaaggaagaggtcaaattatccttg-tttgcagatgatatgatcttatatttggaaaaacctaaagactccacaagaaaatgattagagccgataaattcaatacaattgcagtatacgaaatcaacatacaaaaatcagtagcatttctgtgtgccaacagtaaacaatatgaaaaagaaattagaaaagtaatcccatttatagtagccacacatgaaattaaatacctgggaagtaaccaaaaaagataattacaaagatctctgtaatgaaaactctaaaacgctgatgaaagacattaaagaggacacaaaagatggaaaaatatt---tcttcatggattggaagaatcaatattgttaaaatgtccatactacccaaagcaatctaccgattcagtgcaatccctagcaaaataccaatgacattcttcacaga---aaca--gaaaaaaaaaa--tcctaaaattcatgttgaactacaaaagacccagaatagccgaagctctcataattgaaaagaaacaaactggaggaatcagattacctgacttcaaattatactacagagctatagtaatgaaaacagcatagtactagcataaaaacagacac--agaccaacgaaacagaatggagaatccagaaacaaatccacacatctacggtgaactcattttcgacaaaggtaccaagaacatacactggggaaaagacaatctcttcaataaatggtgctgggaaaacttgatattcatatgcagaagaatgaagctagattcc--tcttttgccatataaaagtt-aaaaaattatgttaagtatcttctctgatcaca-tggactgtaactaaaaattgataacgaggaattttggaaactccaccaacacatgggaattaaacaatatgctcctgaatgaccaacaggtcagtgaagaaattaagaatgaaattaaa--gtttcttgaaacaaatggcaatggcaacacagcatacgaaatctgtgggatatagtgaaagcagtactaagagga----------------------aaatcaaaaaagtagaaaaacttcaaataaataacctaatgatacatcttaaagaactagaaaagaaggagctaaccaaacccataattttaaggacagaaataataaaaattagagcagaaataaaatggagttgaaatgaagaaaataatacaaaagatcaatgaaatgaaaagttggtttttctaaaagat-----aaattgacaagccttcaggcaggctaagagaaaaagaagaccc-----aaatcagaggtgaaaaagtaggcattacaactgatattgcagaaactcaaagggtcattagagactacgaacagctatatgtcaataaattgggaaacgtggaagaaataggtaagtttgcaggccgggcgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggtgggtcacttgaggtcaggagttcgagaccagtctggccaacatggtgaaactccatctctactaaaaatacaaacattaaccaggtgtggttttgcgtgcctgtaattccagccacttggaaggctgaggcacgagaatcacttgagcc-tgggaggtggaggttgcagtgtgctgagatcatgttactgcactccagcctgggtgacagagtgagactgtgtctt--------------caaaaca---------agaaggaaaaagaaatggataatttcacaggcacatacagccttccaagtttgaaccatgaagaaatccagaacctgaacataccaataacaggtaatgagattgaaactgtaataataaaaagtctcccagcaaagaaaaaccccaggacccggtgacttcactgctgaattttaccaaacatttaaagaagaactattaccaatcctagtgaaactattctgaaaaatagaggaggagggaatacttccaaacttattgtagaaggcc-aatattaccctgataccaaaaccagacaaagacataatcaaaaaaacaaaacaggccagtatcccagatgaacattgatgc-agaaatacccaacaaaataccagcaaaccgaattcaacaacacattaaaaacatcattcatcatgaccaaagtgcggtttatcccagggatgccaggatggttcaccatatccaaatcaatgagtttgatacatcatatcaatagaatgaaggataaaaaaccatgtgatcatttaaattcatgctgaaaaggcatttgataaaattcaacatcctttcatgataaaaacccccaaaaaactggttatagaaggaacacacctcaacgcaataaaagccatatacaactgacacacagctagtatcatac---tgaaaggtgaaaaactgaaagcctttcctctaagatctggaacaagacaaggatgcccactgtcaccactgttattcaatataataatggaagcccttgctagaggagtcagataagagagag----aaaggccgggtgcagtggctcacacctgtaatcccagcactttgggaggctgaggtgagtggatcacttgaggtcaggagtttga----agcctggccaacatggtgataccctgtctctactaaaaatataaaaattagctaggcgtggtggcgggtgtctgttgtcccagctactcgggaggctgaggcagggaaatcacttgaaccccggaggtggagattgcagtgagctgagattgtgctgctatattccagcct-gggctatggagcaagactccatctcaa-gaaaaaaaaaac--gaaga----------agaa---ataaagggcatccaaattggaaatgaagatgccaagttattcttgtttgcagatgattgttatatttggaaaaacctaaaaactccaccaaaaaatgattagaactgataaattcagtaaaattgcaggatactaaattaacatacaaaaatcagtagcatttctctctct----------gttttt----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        77927 3580 -    281578 atagatatttctagaacatttca-tctgatggctgcagaatttacattgttctctttagcacatggatcgtcctcaaggttagaccgtatgttaggccacaaaataagtcattaaaaattcaaaccttgatactaaaagcggacaaagacacatcaaggaaagaatactacaggccaatgtctctgatgaatattgatgcaaatatcctcaacaaaatactagcaaaccaaattcagcaatacgttagaaagattgttcattgtgaccaagtggggtttatccctggggtacaaggatggttcaacatatgcaaatcaatcgatgtgatacatcatgtcaacagaaggataaaaaccatgtgattatttcaatcgatgctgaaaaggcatttgataaaattcaacatcctttcatgat-aaaatctcttaaaactggttatggaagaaacatacctcaacataataaaagccgtatgtgacagacccacagctagtatcatactgaatggtgaaaaactgaaagtctttcctctaagatctggaacatgacaaggatgctcagtgtggccaccgttattcaacatagtactggaagttcttgctagagcaatcagacaagagaaagaaataaaaggcctccacattggaaaggaagaagtcaaattatccttg-tttgcagatgatatgatcttatatttggaaaaacctaaagactccacaagaaaatgattagagccgataaattcaatacaattgcagtatacgaaatcaacatacaaaaatcagtagcatttctgtgtgccaacagtaaacaatatgaaaaagcaattagaaaagtaatcccatttatagtagccacacatgaaattaaatacctgggaagtaaccaaagaagataattacaaagatctctgtaatgaaaactctaaaacgctgatgaaagacattaaagaggacacaaaagatggaaaaatatttcatcttcatggatcggaagaatcaatattgttaaaatgtccatactacccaaagcaatctaccgattcagtgcaatccctagcaaaataccaatgacattcttcacaga---aaca--gaaaaaaaaaaa-tcctaaaattcatgttgaaccacaaaagacccagaatagccaaagctctcgtaattgaaaagaaacaaactggaggaatcagattacctgacttcaaattatactacagagctatagtaaccaaaacagcatagtactagcataaaaacagacac--agaccaacggaacagaatagagaatacagaaacaaatccgcacatctatggtgaactcatttttgacaaaggtaccaagaacatacactggggaaaagacattctcttcaataaatggtgctgggaaaacttgatattcatatgcagaagaatgaagctagattcc--tcttttgccatatgaaagttaaaaaaattatgttaagtatcttctctgatcaca-tggactataactaaaaattgataacgatgaattttggaaactccaccaacacataggaattaaacaatatgctcctgaatgaccaacaggtcagtgaagaaattaagaatgaaattaaacaatttcttgaaacaaatggcaatggcaacacagcttacagaacctgtgggatatagtgaaagcagtactaagagga----------------------aaatcaaaaaagtagaaaaacttcaaataaataacctaatgatacatcttaaagaactagaaaagaaggagctaaccaaacccataattttaaggacagaaataataaaaattagagcagaaataaaatggagttgaaatgaagaaaataatacaaaagatcaatgaaatgaaaagttgctttttctaaaagat-----aaattgacaagccttcaggtaggctaagagaaaaagaagaccc-----aaatcagaggtgaaaaagtaggcattacaactgatattgcagaaattcaaagggtcattagagactatgaacagctatatgtcaataaattgggaaacgtggaagaaatagataagtttgcaggccgggcgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggtggatcgcttgaggtcaggagttcgagaccagtctggccaacatggtgaaactccatctctactaaaaatacaaaaattaaccaggtgtggttttgcatgcctgtaattccagccacttggaaggctgaggcacgagaatcacttgagcc-tgggaggttgaggttgcagtgtgctgagatcatgttactgcactccagcctgggtgacagagtgagactgtgtctt--------------caaaaaa---------agaaggaaaaagaaatggataatttcacaggcacatacagccttccaagtttgaaccatgaagaaatccagaacctgaacataccaataacaggtaatgagattgaaactgtaataataaaaagtcttccagcaaagaaaaaccccaggacccagtgacttcactgctgaattttaccaaacatttaaagaagaactattaccaatcctagtgaaactattctgaaaaatagaggaggagggaatacttccaaacttattctaaaaggcc-aatattaccctgataccaaaaccagacaaagacataatcaaaaaaacaaaacaggccagtatcccagatgaacattgatgc-agaaatacccaacaaaataccagcaaaccgaattcaacaacacattaaaaacatcattcatcatgaccaaagtgcggtttatcccagggatgccaggatggttcaccatatccaaatcaatcagtttgatacatcatatcaatagaatgaaggataaaaaaccatatgatcacttaaattcatgctgaaaaggcatttgataaaattcaacaccctttcatgataaaaacccccaaaaaactggttatagaaggaacacacctcaacgcaataaaagccatatacagctgacacacagctagtatcatac---tgaaaggtgaaaaactgaaagcctttcctctaagatctggaacaagacaaggatgcccactgtcaccactgttgttcaatataataatggaagcccttgctagaggagtcagata--agagag----aaaggccaggtgcagtggctcacacctgtaatcccagcactttgggaggctgaggtgaatggatcacttgaggtcaggagtttga----agcctggccaacatggtgataccctgtctctactaaaaatataaaaattagctaggcatggtggcgggtgtctgttgtcccagctactcgggaggctgaggcagggaaatcacttgaaccccggaggtggagattgcagtgagctgagattgtgccgctatattccagcctggggctacggagcaagactccatctcagaaaaaaaaaaaaa--aaaga----------agaa---ataaagggcatccaaattggaaatgaagatgccaagttattcttgtttgcagatgattgttatatttggaaaaacctaaaaactccaccaaaaaatgattcgaactgataaattcagtaaaattgcaggatactaaattaacatacaaaaatcagtagcatttctctcttt--------------------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70935484 3601 + 121039945 atagatatttctagaacatttca-tctgatggctgcagattgtacattgttctctttagcacatgtatcatcctcaaggttagaccatatgttaagccacaaaataagtcattaaaaattcaaaccttgttattaaaagcagacagggacacatcaaagaaagagtactacaggccaatgtctctgatgaatattgatgcagatatcctcaacaaaatattggaaaactaaattcagcaatgcattagaaagattgttcatcgtgaccaagtggggtttatccctgggatacaaggatggttcaacatatgcaaatcaatcaatgtgatacatcgtgtcaacagaaggctaaaaaccatgtgattatttcaattgatgctgaaaaggcatttgataaaattcaacatcctttcatgat-aaaatctcttaaaactggttatggaagaaacatacctcaacataataaaagccatatatgacagacccacagctagtatcatactgaatggtgaaaaactgaaagcctttcctctaagatctggaacatgacaaggatgctcaatgtggccactgttattcaacatagtactggaagttcttgctagagcaatgagacaagagaaaaaaataaacggcatccacattggaaaggaagaagtcaaattatccttg-tttgcagatgatatgatcttatatttggaaaaacctaaagactccacaagaaaatgattagagccaataaattcagcacagttgcagtatacaaaattaacatacaaaaatcagtagcatttctatgtgccaacagtaaacaatatgaaaaagaaattagaaaagtaatcccatttacagtagccacacatgaaattaaatacccaggaagtaaccaaagaagatcattacaaagatctctgtaatgaaaactctaaaatgctgatgaaagacattaaagaggacacaaaaaatggaaaaatacttcatcttcatggattggaaaaatcaatattgttaaaatgtccatactacccaaagcaatctaccgattcagtgcaatccctagcgaaataccaatgacattcttcacaga---aaca--aacaaaaaaaa--tcctaaaattcatgttgaaccacaaaacacccagaatagccgaagctctcgtaattgaaaagaaacaaactggaggaatcagattgcctgacttcagattatactacagagctatagtaaccaaaacagcatagtactagcataaaaacagacacatagaccaatggaacagaatagagaatccagaaacaaatctgcacatctacggagaactcatttttgacaaagataccaagaacatacactggggaaaagacagtcttttcaataaatggtgctgggaaaacttg------atatacagaagaatgaagctagattcctgtcttttgccatataaaagttaaagaaattatgttaaatatcttctctgatcacaatggactataactaaaaatcgataacgaggaattttggaaactccaccaacacatgggaatt--acgatatgttcctgaatgactaacaggtcagtgaagaaattaagaatgaaattaaacaatttcttgaaacaaatggcaatggcaacagagcatacgaaacctgtgggatgtagtgaaagccgtactgagaggaaaatttatagctctaagtgcctaaatcaaaaaagtagaaaaacttcaaataaataacctaatgatacatcttaaggagctggaaaagaaggagctaaccaaacccataattagaaggacagaaataataaagatcagagcagaaataaaatggagttgaaatgaagaaaataatgcaaaagatcagtgaaatgaaaagttgttttttctaaaagataaatgaaattgacaagccttcaggcaggctaagagaaaaagaagacccaaat-aaatcagaggtgaaaaagtaggcattacaactgatattgcagaaattcaaagggtcattagagactgtgaacagctatatgtcaataacttggaaaacctggaagaaatagataagtttgcaggctgggcatggtggctcatgcctataatcccagcactttgggaggctgaggggggtgaatcacttgaggtcaggagttcgagaccactctggccaacatggtgaaactccgtttctactgaaaatacaaaaattaacgaggcatggtgttgcgtgcctgtaattccagccacttgaaaggctgaggcatgagaatcacttgagcc-tgggaggtggaggttgtagtgagctgagatcatgttactgcactccaacctgggtga------------gtgtatc--------------taaaaaa---------aagaagaaaaagaaatggataatttcacaggcacatacagccttccaagtttgaaccatgaagaaatccagaacccgaacgtaccaataacaggtaatgagattgaaactgtaataataaaaagtcttccagcaaagaaaag-cctgggacccaatgagttcactgctgaattttaccaaacattgaaagaggaactattaccaatcctagtgaaactactctgaaaaatagaggaggagggaatacttccaaacttattctaaaaggcc-agaattaccctgataccaaaaccagacaaagacataatcaaaaaaagaaaacaggccagtatcccagatgaacattgatgc-aaaaatacccaacaaaataccagcaaaccgaattcaacaacacattaaaaagatcattaatcatgaccaaagtggggtttatcccagggatgccaggatggttcaccatatccaaatcaatcagtttgatacatcatatcaatagaatgaaggataaaaaaccatatgatcgtttaaattcatgctgaaaaggcatttgataaaattcaacatcttttcatgataaaaacccgaaaaaaactggttatagaaggaacacacctcaacgcaataaaagccatatacaactgacacacagctagtatcatac---tgaaaggtgaaaaactgaaagcctttcctctaagatctggaacaagacaaggatgcccactgtcaccactgttattcaatataatactggaagcccttgctagaggagtc----aagagagag----aaaggctgggtgcagtggctcacacctataatcccagcactttgggaggctgaggtgagtggatcacttgaggtcaggagtttgagaccagcctggccaacacggtgataccctatctctactaaaaatataaaaattagctaggcatggtggcgggtgtctgttgttccagctactcgggaggctgaggcagggaaatcacttgaaccctggaggcggagattgca-tgagctgagattgtgccgttatattccagcct-ggactacagagcaagactccatctcagaaaacaaacaaaa--aaaga----------agaa---ataaagggcatccaaattggagatgaagaagccaagttattcttgtttgtagatgattgttatatttggaaaaacctaaaaactccaccaaaaaatgattagaacggataaattcagtaaaattgcaggatattaaattaccatgctaaaatcagtagcatttctctctct---------ctttttt----
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011934v1       409786 3633 +   2379783 atagatatttctagaacatttcattctgatggctgcacaatgtacattgttctctttagcacatggatcatccacaaagatagaccatatgttaggccactaaataagtcattaaaaattcaaaacttgatactaaaagcagacaaagacacatcaaagaaagaaaaccacaagccagtgtctctgatgaatattgatgcaaatatcctcaacaaaatattagcaaagcaaattcagcaatacattagaaagatcattcattgtgaccaagtgggatttatccctgggatacaaggatggttcaacatatgcaaatcaattgatgtgatacctcgtatcaacagaaggataaaaaccatgtg--tatttcaattgatgctgaaaaagcatttgataaaattcaacatcctttcatgataaaaatctgttaaaactggttatggaagaaacatacctcaacataataaaagccgtatatgatagacccacagctagtatcatactgaatggtgaaaaactgaaagcctttcctccaa-atctggaacatgacaagaatgctcagtgtggccaccgttatgcaacatagtactggaagttcttgctagagcaatgagacaagagaaagaaataaaaggcatccacattggaaaggaagaagtcaaattatccttg-tttgcagatgatatgattttatatttggaaaaacctaaagactccacaagaaaatgattagagctgataaattcagtacagttccagtatacaaaatcaacataaaaaaatcagtagcatttccgtgtgccaatagtaaacaatatgaaaaagaaattagaaaagtaatcccatttacagtagccacatgtaaaattaaatacctaggaagtaaccaaagaagatcattacaaagatctctgtaatgaaaactctaaaacgctgatgaaagaaattaaagaggacacaaaaaatggaaaaatgtttcatgtttatggattggaagaatcagtattgttaaaatgtccatactacctaaagcaatctactgattcagtgcaatccctagcgaaatgccaatgacattcttcacaga---aacaacaacaacaaaaaa-tccgaaaattcatgttggaccacaaaagactcagagtaactgaagctctcctaattaaaaagaaacaaactggaggaatcagattacctgacttcaaattatactatagagctatagtaaccaaaacagcatggtactagcataaaaacagacacatagaccagcggaacagaatagagaatccagaaacaaatctgcacatctacagtgaactcatgttggacaaaggtatcaagaacatacactggggaaaagacagtctcttcaataaatggtgctgggaaaacttgacagtcatatgcagaagaatgaagctagattcctgtcttttgccataaaaaagttaaaaaaattatgtcaagtatcttctctgatcacaatggattataactaaaaatcgataacaaggaattgtggaaactccaccaatacatgggaattaaacaatgtgcccctgaatgaccaacaggtcaatgaaaaaattaagaatgaaattaaacaatttcttgaaacaaatggtgatggcaacgcagcatacgaaacctgtgggatatagtgaaagaagtactaagaggaaaatttatagctctaagtgcctaaatcaaaaaagtagaaaaacttcaaataaataacctaatgatacatcttaaagaactagaaaagaaggagctaaccaaacccataattagacggacacaaatcataaatatcagagcagaaataaaatgaagttgaaatg-----aagaatacaaaagatcaatgaaaagaaaagttggtttttctaaaagataaatgaagttggcaagccttcaggcaggctaagagaaaaagaagacccaaataaaatcagaggtgaaaaagtaggcattacaactgatattgcagaaattcaaagggtcattagagactatgaacaactgtatgtcaataaattggaaaatctggaagaaatagataagtttgcaggctggacgcggtggctcatgactgtaatcccagcactttgggaggctgaggcaggtggatcacttgagatcgtgattttgagaccagtctggccaacatggtgaaactccatctctactaagaatacaaaaattaaccaggcgtggtgttgcgtgcttgtaattccagccacttgggaggctgcggcacgagaatcacttgagcc-tgggaggtgaaggttgcagtgagctgagatcatgttactgcactccagcctgggtgatagagtgagactgtgtctcagggaggagaaaaaaaaaaaaaaaaaaagcaaaaggaaaaagcaatggataatttcacaggcacatacagacttccaaggttgagccatgaggaaatccagaacctgaacgtaccaataacaggtaatgagattgaaactgtaataataaaaagtcttccagcaaagaaaag-cccgggacccgatggcttcattgctgaattttaccaaacatttaaa---gaactattaccaatcctagtgaaactattctgaaaaatagaagagaagggaatacttccaaacttattctaaaaggcctgata----cctgataccaaaaccagacaaagacataatcaaaaaag-aaaacaggccagtatcccagatgaacattgatgcaaaaaatactccacaaaataccaggaaaccgaattcagcaacacatgaaaaagatcattcttcatgaccaaagtggggtttatccccgggatgccaggatggttcaccatatccaaatcaatcagtttgatacatcatatcaatagaatgaaggattaaaaaccgtatgatcatttaaattcatgctaaaaaggcgtttgataaaatttgacatcctttcataataaaaaccct----aaactggttatagaaggagcacacctcaacgcaataaaagccatatatgactgatgcacagctagt---atactgatgaaaggtgaaaaactgaaagcctttcctctaagatctggaacaagacaaggatgcccactgtcaccactgttattcaatataatactggaagcccttgttagaggagttagataagagagagaagtaaaggccgggtgcagtggctcacatctgtaatcccagcactttgggaggctgaggtgagtggatcacttgaggtcaggaatttgagaccagcctggtcaacatggtgataccctatcgctactaaaaatataaaaattagctgagtgtggtagcgggtacctgttgttccagctacttgggaggttgaggcagggaaatcgcttgaaccccggaggcggagattgctgtgagctgagattgtgccactatattccagcct-gggctacagagcaagactccatctcag-aaaaaaataaaaagaa-------------aaaa---ataaagggcatccaaattggaaatgaagaagccaaattattcttgtttgcagatgattgttatatttggtaaaacctaaaaactccaccaaaaaatgattagaactaataaattcagtaaaattgcagggtactaaattaacatactaaaatcagtaacatttctttcttt-----------c--------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       375086 3632 +   4116138 atagatatttctagaatgtttcattctgatggctgcagaatgtacattgttctctttagcacatggatcatccacaaagatagaccatatgttaggccactaaataagtcattaaaaattcaaaacttgatactaaaagcagacaaagacacatcaaagaaagaaaaccacaagccagtgtctctgatgaatattgatgcaaatatcctcaacaaaatactagcaaagcaaattcagcaatacattagaaagatcattcattgtgaccaagtgggatttatccctgggatacaaggatggttcaacatatgcaaatcaattgatgtgatacctcgtatcaacagaaggataaaaaccatttg--tatttcaattgatgctgaaaaagcatttgataaaattcaacatcctttcatgataaaaatctgttaaaactggttatggaagaaacatacctcaacataataaaagccgtatatgatagacccacagctagtatcatactgaatggtgaaaaactgaaagcctttcctccaa-atctggaacatgacaaggatgctcagtgtggccaccgttatgcaacatagtactggaagttcttgctggagcaatgagacaagagaaagaaataaaaggcatccacattggaaaggaagaagtcaaattatccttgttttgcagatggtatgattttatatttggaaaaacctaaagactccacaagaaaatgattagagctgataaattcagtacagttccagtatacaaaatcaacataaaaaaatcagtagcatttctgtgtgccaatagtaaacaatatgaaaaagaaattagaaaagtaatcccatttacagtggccacacgtaaaattaaatacctaggaagtaaccaaagaagatcattacaaagatctctgtaatgaaaactctaaaacgctgatgaaagaaattaaagaggacacaaaaaatggaaaaatgtttcatgtttatggattggaagaatcagtattgttaaaatgtccatactacccaaagcaatctactgattcaatgcaatccctagcgaaatgccaatgacattcttcacagaaacaacaacaacaacaacaaa-tccgaaaattcatgttgcaccacaaaagactcagaataattgaagctctcctaattaaaaagaaacaaactggaggaatcagattacctgacttcaaattatactatagagctatagtaaccaaaacagcatggtactagcataaaaacagacacatagaccagcggaacagaatagagaatccagaaacaaatctgcacatctacagtgaactcatgttcgacaaaggtaccaagaacatacactggggaaaagacagtctcttcaataaatggtgctgggaaaacttgacagtcatatgcagaagaatgaagctagattcctgtcttttgccataaaaaagttaaaaaaattatgtcaagtatcttctctgatcacaatggactataactaaaaatcgataacaaggaattgtggaaactccaccaacacatgcgaattaaacaatgtgcccctgaatgaccaacaggtcaatgaaaaaattaagaatgaaattaaacaatttcttgaaacaaatggcgatggcaatgcagcatacgaaacctgtgggatatagtgaaagaagtactaagaggaaaatttaaagctctaagtgcctaaatcaaaaaagtagaaaaacttcaaataaataacctaatgatacatcttaaagaactagaaaagaaggagctaaccaaacccataattagacggacacaaatcataaatatcagagcagaaataaaatgaagttgaaatgaagaaaagaatacaaaagatcaatgaaaagaaaagttggtttttctaaaagataaatgaaattggcaagccttcaggcaggctaagagaaaaagaagacccaaataaaatcagaggtgaaaaagtaggcattacaactgatattgcagaaatccaaagggtcattagagactatgaacaactatatgtcaataaattggaaaatctggaagaaatagataagtttgcaggctggacgcggtggctcatgactgtaatcccagcactttgggaggctgaggcaggtggatcacttgagatcgtgattttgagaccagtctggccaacatggtgaaactccatctctactaaaaatacaaaaattaaccaggcgtagtgttgcgtgcttgtaattccagccacttgggaggctgaggcacgagaatcagttgagcc-tgggaggtgaaggttgcagtgagctgagatcatgttactgcactccagcctgggtgacagagtgagactgtgtctcagggagggg--------aaaaaaaaaaagcaaaaggaaaaagcaatggataatttcacaggcacatacagacttccaaggttgaaccatgaggaaatccagaacctgaacgtaccaataacaggtaatgagattgaaactgtaataataaaaagtcttccagcaaagaaaag-cccgggacccaatggcttcactgctgaattttaccaaacatttaaa---gaactattaccaatcctagtgaaactattctgaaaaatagaggagaagggaatacttccaaacttattctaaaaggcctgata----cctgataccaaaaccagacaaagacataatcaaaaaag-aaaacaggccagtatcccagatgaacattgatgc-aaaaatactcaacaaaataccaggaaaccgaattcagcaacacatgaaaaagatcattcttcatgaccaaagtggggtttatccccgggatgccaggatggttcaccatatccaaatcaatcagtttgatacatcatatcaatagaatgaaggataaaaaaccgtatgatcatttaaattcatgctaaaaaggcgtttgataaaatttgacatcctttcataataaaaaccct----aaactggttatagaaggaacacacctcaacgcaataaaagccatatatgactgatgcacagctagt---atac---tgaaaggtgaaaaactgaaagcctttcctctaagatctggaacaagacaaggatgcccactgtcaccactgttattcaatataatactggaagcccttgttagaggagttagataagagagagaagtaaaggccgggtgcagtggctcacacctgtaatcccagcactttgggaggctgaggtgagtggatcacttgaggtcaggaatttgagaccagcctggtcaacatggtgataccctatcgctactaaaaatacaaaaattagctgagtgtggtagcgggtacctgttgttccagctacttgggaggttgaggcagggaaatcggttgaaccccggaggcggagattgctgtgagctgagattgtgccactatattccagcct-gggctacagagcaagactccatctcag-aaaaaaattaaa--aa-------------aaaa---ataaagggcatccaaattggaaatgaagaagccaaattattcttgtttgcagatgattgttatatttggaaaaacctaaaaactccaccaaaaaatgattagaactaataaattcagtaaaattgcagggtactaaattaacatactaaaatcattaacatttctttcttc-----------ctttc----
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53807349 3643 +  58131712 atagatatttctagaacgtttcattctgatggctgcagaatgtacattgttctctttagcacatggatcatccacaaagatagaccatatgttaggccactaaataagtcattaaaaattcaaaacttgatactaaaagcagacaaagacacatcaaagaaagaaaaccacaagccagtgtctctgatgaatattgatacaaatatcctcaacaaaatactagcaaagcaaattcagcaatacattagaaagatcattcattgtgaccaagtgggatttatccctgggatacaaggatggttcaacgtatgcaaatcaattgatgtgatacctcgtatcaacagaaggataaaaaccatgtg--tatttcaattgatgctgaaaaagcatttgataaaattcaacatcctttcatgataaaaatctgttaaaactggttatggaagaaacatacctcaacataataaaagccatatatgatagacccacagctagtatcagactgaatggtgaaaaactgaaagcctttcctccaa-atctggaacatgacaaggatgctcagtgtggccaccgttatgcaacatagtactggaagttcttgctagagcaatgagacaagagaaagaaataaaaggcatccacattggaaaggaagaagtcaaattattcttg-tttgcagatgatatgattttatatttggaaaaacctaaagactccacaagaaaatgattagagctgataaattcagtacagttccagtatacaaaatcaacataaaaaaatcagtagcatttctgtgtgccaatagtaaacaatatgaaaaagaaattagaaaagtaatcccacttacagtagccacacgtaaaattaaatatctaggaagtaaccaaagaagatcattacaaagatctctgtaatgaaaactctaaaacgctgatgaaagaaattaaagaggacat-aaaaatggaaaaatgtttcatgtttatggattggaagaatcagtattgttaaaatgtccgtactacctaaagcaatctactgattcaatgcaatccctagcgaaatgccaatgacattcttcacaga---aacaacaacaacaaaaaa-tccgaaaattcatgttggaccacaaaatactcagaataactgaagctctcctaattaaaaagaaacaaactggaggaatcagattacctgacttcaaattatactacagagctatagtaaccaaaacagcatggtactagcataaaaacagacacatagaccagcggaacagaatagagaatccagaaacaaatctgcacatctatagcaaactcatgttcgacaaaggtaccaagaacatacactggggaaaagacagtctcttcaataaatggtgctgggaaaacttgacagtcatatgcagaagaatgaagctggattcctgtcttttgccataaaaaagttaaaaaaattatgtcaagtatcttctctgatcacaatggactataactaaaaatcgataacaaggaattgtggaaactccaccaacacatgggaattaaacaatgtgcccctgaatgaccaacaggtcaatgaaaaaattaagaatgaaattaaacaatttcttgaaacaaatggcgatggcaacgcagcatacgaaacctgtgggatgtagtgaaagaagtactaagaggaaaatttatagctctaagtgcctaaatcaaaaaagtagaaaaacttcaaataaataacctaatgatacatcttaaagaactagaaaagaaggagctaaccaaacccataattagaaggacacaaatcataaatatcagagcagaaataaaatgaagttgaaatgaagaaaagaatacaaaagatcaatggaaagaaaagttggtttttctaaaaggtaaatgaaattggcaagccttcaggcaggctaagagaaaaagaagacccaaataaaatcagaggtgaaaaagtaggcattacaactgatattgcagaaattcaaagggtcattagagactatgaacaactatatgtcaataaattagaaaatctggaagaaatagataagtttgcaggctggacgcggtggctcatgactgtaatcccagcactttgggaggctgaggcaggtggatcacttgagatcgtgattttgagaccagtctggccaacatggtgaaactccatctctactaaaaatacaaaaattaaccaggcgtggtgttgcgtgcttgtaattccagccacttgggaggctgaggcacgagaatcacttgagcc-tgggaggtgaaggttgcagtgagctgagatcatgttactgcactccagcctgggtgacagaatgagactgtgtctcaggga-gga-----aaaaaaaaaaaaaagcaaaaggaaaaagcaatggataatttcacaggcacatacagacttccaaggttgaaccatgaagaaatccagaacctgaacgtaccaataacaggtaatgagattgaaactgtaataataaaaagtcttccagcaaagaaaag-cccgggacccaatggcttcactgctgaattttaccaaacatttaaa---gaactattaccaatcctagtgaaactattctgaaaaatagaggagaagggaatacttccaaaa-tattctaaaaggcctgata----cctgataccaaaaccacacaaagacatgatcaaaaaag-aaaacaggccagtatcccagatgaacattgatgc-aaaaatactccacaaaataccaggaaaccgaattcagcaacacatgaaaaagatcattcttcttgaccaaagtggggtttatccccgggatgccaggatggttcactatatccaaatcaatcagtttgatacatcatatcaatagaatgaaggataaaaaaccgtatgatcatttaaattcatgctaaaaaggcgtttgataaaatttgacatcctttcataataaaaaccct----aaactggttacagaaggaacacacctcaacgcaataaaagctatatatgactgatgtacagctagt---ata----tgaaaggtgaaaaactgaaagcctttcctctaagatctggaacaagacaaggatgcccactgtcaccactgttattcaatataatactggaagcccttgttagaggagttagataagagagagaaataaaggccgggtgcagtggctcacacctgtaatcccagcactttgggaggctgaggtgagt-gatcacttgagatcaggaatttgagaccagcctggtcaacatggtgataccctatcgctactaaaaatataaaaattagctgagtgtggtggcgggtacctgttgtcccagctacttgggaggttgaggcacggaaatcgcttgaaccccggaggcggagattgctgtgagctgagattgtcccactatattccagcct-gggctacagagcaagactccatctcag-aaaaaaataaaa--aaataaaaaaaaaataaaa---ataaagggcatccaaattagaaatgaagaagccaaattattcttgtttgcagatgattgttatatttggaaaaacctaaaaactccaccaaaaattgattagaactaataaattcagtaaaattgcagggtactaaattaacatactaaaatcagtaacatttcttttttt-----------ttttttttt
i chlSab2.chr26             C 0 I 2756
s manLeu1.NW_012102332v1       422978 3632 -   3636681 atagatatttctagaacgtttcattctgatggctgcagaatgtgcattgttttctttagcacatggatcatccacaaagatagaccatatgttaggccactaaataagtcattaaaaattcaaaacttgatactaaaagcagacaaagacacatcaaagaaagaaaaccacaagccagtgtctctgatgaatattgatgcaaatatcctcaacaaaatactagcaaagcaaattcagcaatacattagaaagatcattcattgtgaccaagtgggatttatccctgggatacaaggatgattcaacatatgcaagtcaattgatgtgatacctcgtatcaacagaaggataaaaaccatgtg--tatttcaattgatgctgaaaaagcatttgataaaattcaacatcctttcatgataaaaatctgttaaaactggttatggaagaaacatacctcaacataataaaagccatatatgatagacccacagctagtatcatactgaatggtgaaaaactgaaagcctttcctccaa-atctggaacatgacaaggatgctcagtgtggccaccgttatgcaacatagtactggaagttcttgctagagcaatgagacaagagaaagaaataaaaggcatccacattggaaaggaagaagtcaaattatccttg-tttgcagatgatatgattttatatttggaaaaacctaaagactccacaagaaaatgattagagctgataaattcagtacagttccagtatacaaaatcaacataaaaaaatcagtagcatttctgtgtgccaatagtaaacaatatgaaaaagaaattagaaaagtaatcccatttacagtagccacacgtaaaattaaatacctaggaagtaaccaaagaagatcattacaaagatctctgtaatgaaaactctaaaacgctgatgaaagaaattaaagaggacacaaaaaatggaaaaatgtttcatgtttatggattggaagaatcagtattgttaaaatgtccatactacccaaagcaatctactgattcaatgcaatccctagcgaaatgccaatgacattcttcacaga---aacaacaacaacaaaaaa-tccgaaaattcatgttggaccacaaaagactcagaataactgaagctctcctaattaaaaagaaacaaactggaggaatcagattacctgacttcaaattatactatagagctatagtaaccaaaacagcatggtactagcacaaaaacagacacatagaccagtggaacagaatagagaatccagaaacaaatctgcacatctacagcgaactcatgttcgacaaaggtaccaagaacatacactggggaaaagacagtctcttcaataaatggtgctgggaaaacttgacagtcatatgcagaagaatgaagctagattcctgtcttttgccataaaaaagttaaaaaaattatgtcaagtatcttctctgatcacaatggactataactaaaaatcgataacaaggaattgtggaaactccaccaacacatgggaattaaacaatgtgcccctgaatgaccaacaggtcaatgaaaaaattaagaatgaaattaaacaatttcttgaaacaaatggcgacggcaacgcagcatacgaaacctgtgggatatagtgaaagaagtactaagaggaaaatttatagctctaagtgcctaaatcaaaaaagtagaaaaacttcaaataaataacctaatgatacatcttaaagaactagaaaagaaggagctaaccaaacccataattagacggacacaaatcataaatatcagagcagaaataaaatgaagttgaaatgaagaaaagaatacaaaagatcaatgaaaagaaaagttggtttttctaaaagataaatgaaattggcaagccttcaggcaggctaagagaaaaagaagacccaaataaaatcagaggtgaaaaagtaggcattacaactgatattgcagaaattcaaagggtcgttagagactatgaacaactatatgtcaataaattggaaaatctggaagaaatagataagtttgcaggctggatgcggtggctcatgactgtaatcccagcactttgggaggttgaggcaggtggatcacttgagatcgtgattttgagaccagtctggccaacatggtgaaactccatatctactaaaaatacaaaaattaaccaggcgtggtgttgcgtgcttgtaattccagccacttgggaggctgaggcacgagaatcacttgagcc-tgggaggtgaaggttgcagtgagctgagatcatgttactgcactccagcctgggtgacagagtgagactgtgtctcagggaggga-----aaaaaaaaaaaaaagcaaaaggaaaaagcaatggataatttcacaggcacatacagacttccaaggttgaaccatgaagaaatccagaacctgaacataccaataacaggtaatgagattgaaactgtaataataaaaagtcttccagcaaagaaaag-cccgggacccaatggcttcactgctgaattttaccaaacatttaaa---gaactattaccaatcctagtgaaactattctgaaaaatagaggtgaagggaatacttctaaacttattctaaaaggcctgata----cctgataccaaaaccagacaaagacataatcaaaaaag-aaaacaggccagtatcccagatgaacattgatgcaaaaaatactccacaaaataccaggaaaccgaattcagcaacacatgaaaaagatcattcttcatgaccaaagtggggtttatccccgggatgccaggatggttcaccatatccaaatcaatcagtttgatacatcatatcaatagaatgaaggataaaaaaccgtatgatcatttaaattcatgctaaaaaggcgtttgataaaatttgacatcctttcataataaaaaccct----aaactggttatagaaggaacacacctcaacgcaataaaagccatatatgactgatgcacagctagt---atac---tgaaaggtgaaaaactgaaagcctttcctctaagatctggaacaagacaaggatgcccactgtcgccactgttattcaatataatactggaagcccttgttagaggagttagataagagagagaagtaaaggccggatgcagtggctcacacctgtaatcccagcactttgggaggctgaggtgagtggatcacttgaggtcaggaatttgagaccagcctggtcaacatggtgataccctatcgctactaaaaatataaaaattagctgagtgtggtagcgggtacctgttgttccagctacttgggaggttgaggcagggaaatcgcttgaaccccggaggcggagattgctgtgagctgagattgtgccactatattccagcct-gggctacagagcaagactccatctcag-aaaaaaataaaa--aa-------------aaaa---ataaagggcatccaaattggaaatgaagaagccaaattattcttgtttgcagatgattgttatatttggaaaaacctaaaaactccaccaaaaaatgattagaactaataaattcagtaaaattgcagggtactaaattaacatactaaaatcagtaacatttctttcttt-----------ctttc----
i manLeu1.NW_012102332v1    C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434773 1692 +  16154928 I
e canFam3.chr3               59932196  759 -  91889043 I
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e otoGar3.GL873689             355123  306 +   3845361 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e colAng1.NW_012115278v1       401842 8766 -   4457520 I
e rheMac8.chr7              164239791 6526 - 169600520 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55215966 6879 + 190850796 I
e macFas5.chr7              165560602 6522 - 171882078 I

a score=4368324.000000
s hg38.chr15_KI270851v1_alt    156481 1855 +    263054 tttttttttttttttgagatggagtctcactctgtggcccaggctggaaagcaatggcgcaatctcggctcactgcaacctctgcctcctgggttcaagcgatccgcctgtgttagccgcctgagtagctgggattacaggcgcctgccaccaggcctggctaatttttgtatttttagtagagacagggtttcaccacattggccaggctggtctcgaactcctgacctcaggtgatccgcctgcctcggcctcccaaagtgctgggattacaggtatgagccactttgcccagccaaatcagtagcatttctatatgtcaacagtgaacaatatgaaaaat--aaatcaagaaaaataattccatttataatagctacaaataaagtaaaatacgtaggaataaacctaacccaagaagtgaaaagatctctaccacgaaaactgtaaaacattgatgcagaaaattgaagaagacacacagaaaaggaaaagatactctgtgttcatggattggaagaatcaatattgttaaaatgtctgtactacccaaagcaatctacaggttcaatgtaatccctatcaaaataccaatgacattcttcacagaaatag--aaaaaaaaaatcctgaaatttgtatggaatcacaa--gagacagaatagccaaagccatcctgagcaaaaaacaaaactggagaaattgcattacctgacttaaaattatactacagtcacttcctggtcttttttggcttagatcaagtgcaaagtttactagaaaggtat-accaaaacagcatggtactggtataaaaacagacacctagaccaatggaacagaatagagaacccagaaacagatctatacatctacagtgaactcacctttgacagaggtgcccggaggatacatgagggaaaggatagcctcattgataaatggtgctgggaaaatggggcacccatatgcagaaaaatgaaactagaccactatctctcaccatatacgaaaatcacatcaaaatggagtaaagacttaaacctaagacttcagactatgaaagtgctaaaagaaaacattggggagactctccaggacattgcactgggtagtgatttcttgagtaata-cttcgtaaacacaggcaaccaaagctaaaatggacaagtgggatcacattgagttaaaaag---ctgcacagcaaaggaaacaatcaacaaaatgaagagacaacccacagaatggg-agaaaatatttgcaaactacccatctgacaaaggattaataaccagaatatataattagcttaagcaactctatagg--aaaaaaatctaataatccaataagaatgggcaaaagatttgaatagacatttctcaaaagaagatatacaaatgacaaacaggcagtacgaacaggtgctcaacatggttggtcatcagagacatgcaaatcaaaactataatgagatattatctcaccctaattaaaatggcttatatccaaaag----acaagaacaaatgctggcaagaatatagagaaaagggaacccttgtgcactgttggtgggaatgtaaattagcacagccattatggagattagcttggaggttcctcaaaaaactaaaaataggactatcatatgattcagcaatcccactggtaggtatatacccagaggaaagaatatcagtatgttgaagaaatatgtacactctcatgtttattgcagcactattctcaatagccaagatttggaagcaacctaagtgt-tcccagcagatgaatggatgaagaaaatgtggtatatatactcaacggagtactattcaaccatgaaaaagaatgggatact-gccgttt
s panTro5.chr15              73729111 1853 -  83230942 tttttttttttttttgagatggagtctcactctgtggcccaggctggaaagcaatggtgcaatctcggctcactgcaacctctgcctcctgggttcaagcgatcctcctgccttagccgcctgagtagctggcattacaggcgcccgccaccaggcctggctaatttttgtatttttagtagagacagggtttcaccacattggccaggctggtcttgaactcctgacctcaggtgatccgcctgcctcggcctcccaaagtgctgggattacaagtatgagccactgtgcctggccaaatcagtggcatttctatatgtcaacagtgaacaatatgaaaaat------caagaaaaataattccatctataatagctacaaataaagtaaaatacgtaggaataaaactaacccaagaagtgaaaagatctctaccacgaaaactgtaaaacagtgatgcagaaaattgaagaagacacacaaaaaaggaaaagatactcagtgttcatggattggaagaatcaatattgttaaaatgtctgtactacccaaagcaatctacaggttcaatgtaatccctatcaaaataccaatgacattcttcacagaaatag--aaaaaaaaaatcctgaaatttgtatggaatcacaaaagagacagaatagccaaagccatcctgagcaaaaaacaaaactggagaaactgcattacctgacttaaaattatactacagtcacttcctggtcttttttggcttagatcaagtgcaaagtttactagaaaggtat-accaaaacagcatggtactggtataaaaacagacacctagaccaatggaacagaatagagaacccagaaacagatccatacatctacagtgaactcacctttgacagaggtgcccggaggatacatgagggaaaggatagcctcattgataaatggtgctgggaaaatgggacacccatatgcagaaaaatgaaactagaccgctctctctcaccatacacgaaaatcacatcaaaatggagtaaagacttaaacctaagacttcagactatgaaagtgctaaaagaaaacattggggagactctccaggacattgcactgggtaatgatttcttgagtaata-cttcgtaaacacaggcaaccaaagctaaaatggacaagtgggatcacattgagttaaaaag---ctgcacagcaaaggaaacaatcaacaaaatgaagagacaacccacagaatggg-agaaaatatttgcaaactacccatctgacaagggattaataaccagaatatataattagcttaagcaactctataag--aaaaaaatctaataatccaataagaatgggcaaaagatttgaatagacatttctcaaaagaagatatacaaatgacaaacaggcaatacgaacaggtgctcaacatggttggtcatcagagaaatgcaaatcaaaactataatgagatattatctcaccctaattaaaatggcttatatccaaaag----acaagaacaaatgctggcaagaatatagagaaaagggaacccttgtgcactgttggtgggaatgtaaattagcacagccattatggagattagcttggaggttcctcaaaaaactaaaaataggactatcatatgattcagcaatcccactggtaggtatatagccagaggaaagaatatcagtatgttgaagaaataggtacactctcatgtttattgcagcactattctcaatagccaagatttggaagcaacctaagtgt-tcccagcagatgaatggatgaagaaaacgtggtatatatactcaatggagtactattcaaccataaaaaagaatgggatact-gccgttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74032680 1851 -  99763055 tttttttttttttttgagatggagtctcactctgtggcccaggctggaaagcaatggcgcaatctcggctcactgcaacctctgcctcctgggttcaagcgatcctcctgccttagccgcctgagtagctggcattacaggcgcctgccaccaggcctggctaatttttgtatttttagtagagacagggtttcaccacattggccaggctggtcttgaactcctgacctcaggtgatccgcctgcctcggcctcccaaagtgctgggattacaagtatgagccactgtgcccggccaaatcagtagcatttctatatgtcaacagtgaacaatatgaaaaat------caagaaaaataattccatttataatagctacaaataaagtaaaatacgtaggaataaaactaacccaagaagtgaaaagatctctaccacgaaaactgtaaaacagtgatgcagaaaattgaagaagacacacaaaaaaggaaaagatactcagtgttcatggattggaagaatcaatattgttaaaatgtctgtactacccaaagcaatctacaggttcaatgtaatccctatcaaaataccaatgacattcttcacagaaatag---aaaaaaaaatcctgaaatttgtatggaatcacaaaagagacagaatagccaaagccatcctgagcaaaaaacaaaactggagaaactgcattacctgacttaaaattatactacagtcacttcctggtcttttttggcttagatcaagtgcaaagtttactagaaaggtat-accaaaacagcatggtactggtataaaaacagacacctagaccaatggaacagaatagagaacccagaaacagatccatacatctacagtgaactcacctttgacagaggtgcccggaggatacatgagggaaaggatagcctcattgataaatggtgctgggaaaatgggacacccatatgcagaaaaatgaaactagaccgctctctctcaccatacacgaaaatcacatcaaaatggagtaaagacttaaacctaagacttcagactatgaaagtgctaaaagaaaacattggggagactctccaggacattgcactgggtaatgatttcttgagtaata-cttcgtaaacacaggcaaccaaagctaaaatggacaagtgggatcacattgagttaaaaag---ctgcacagcaaaggaaacaatcaac-aaatgaagagacagcccacagaatgag-agaaaatatttgcaaactacccatctgacaagggattaataaccagaatatataattagcttaagcaactctataag--aaaaaaatataataatccaataagaatgggcaaaagatttgaatagacatttctcaaaagaagatatacaaatgacaaacaggcaatacgaagaggtgctcaacatggttggtcatcagagaaatgcaaatcaaaactataatgagatattatctcaccctaattaaaatggcttatatccaaaag----acaagaacaaatgctggcaagaatatagagaaaagggaacccttgtgcactgttggtgggaatgtaaattagcacagccattatggagattagcttggaggttcctcaaaaaactaaaaataggactatcatatgattcagcaatcccactggtaggtatatagccagaggaaagaatatcagtatgttgaagaaataggtacactctcatgtttattgcagcactattctcaatagccaagatttggaagcaacctaagtgt-tcccagcagatgaatggatgaagaaaacgtggtatatatactcaatggagtactattcaaccataaaaaagaatgggatact-gccgttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        81507 1858 -    281578 -ttttttttttttttgagatggagtctcactctgtggcccaggctgggaagcaatggcacaatctcggctcactgcaacctctgcctcctgggttcaagcgatcctcctgccttagctgcctgagtagctggcattacaggtgcccgccaccaggcctggctaatttttgtatttttagtagagacagggtttcaccacattagccaggctggtcttgaactcctgacctcaggtgatccgcctgcctcggcctcccaaagtgctgggattacaggtatgagccactgtgcctggccaaatcagtagcatttctatatgtcaacagtgaacaatatgaaaaat--aaatcaagaaaaataattccatttataatagctacaaataaagtaaaatacgtaggaataaacctaacccaagaagtgaaaagatctctaccacgaaaactgtaaaacattgatgcagaaaattgaagaagacacacaaaaaaggaaaagatactccatgttcatggattgggagaatcaatattgttaaaatgtctgtactacccaaagcaatctacaggttcaatgtaatccctatcaaaataccaatgacattcttcacagaaatagaaaaaaaaaaaatcctgaaatttgtatggaatcacaaaagagacagaatagccaaagccatcctgagcaaaaaacaaaactggagaaattgcattacctgacttaaaattatactccagtcacttcctggtcttttttggcttagatcaagtgcaaagtttactagaaaggtat-accaaaacagcatggtactggtataaaaacagacacctagaccaatggaacagaatagagaacccagaaacagatccatacatctacagtgaactcacctttgacagaggtgcccggaggatacatgagggaaaggatagcctcattgataaatggtgctgggaaaatgggacacccatatgcagaaaaatgaaactagaccgctatctctcaccatatacgaaaatcacatcaaaatggagtaaagacttaaacctaagacttcagactatgaaagtgctaaaagaaaacattggggagactctccaggacgttgcactgggtaatgatttcttgagtaata-cttcgtaaacacaggcaaccaaagctaaaatggacaagtgggatcacattgagttaaaaag---ctgcacagcaaaggaaacaatcagcaaaatgaagagacaacccacagaatggg-agaaaatatttgcaaactacccatctgacaagggattaataaccagaatatataattagcttaagcaactctatagg--aaaaaaatctaataatccaataagaatgggcaaaagatttgaatagacatttctcaaaagaagatatacaaatgacaaacaggcaatacgaacaggtgctcaacatggttggtcatcagagaaatgcaaatcaaaactataatgagatattatctcaccctaattaaaatggcttctatccaaaag----acaagaacaaatgctggcaagaatatagagaaaagggaacccttgtgcactgttggtgggaatgtaaattagcacagccattatggagattagcttggaggttcctcaaaaaactaaaaataggactatcatatgattcagcaatcccactggtaggtatatacccagaggaaagaatatcagtatgttgaagaaatatgtacactctcatgtttattgcagcactattctcaatagccaagatttggaagcaacctaagtgt-tcccagcagatgaatggatgaagaaaatgtggtatatatactcaatggagtactattcaaccataaaaaagaatgggatact-gccgttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70939085 1842 + 121039945 tttttttttttttttgagatggagtctcactctgtggcccaggctggaaagcaatggcgcaatctcggctcactgcaacctctgcctcctgggttcaagcgatcctcctgccttagccgcctgagtagttgggattacaggcgcctgccgccaggtctggctgatttttgtatttttagtagagacggggtttcaccacattggccaggctggtcttgaactcctgacctcaggtgatccgactgcctcagcctcccaaagtgctgggattacaggtatgagccactgtgcctggccaaatcagtagcatttctatatgtcaacagtgaacaatatgaaaaatttaaatcaagaaaaataattccatttataatagctacaaataaagtaaaatacgtaggaataaacctaacccaagaagtgaaaagatctcggccttgaaaac--taagacattgatgcagaaaattgaagaagacacacaaaaaaggaaaagatactccatgttcatgaattggaagaatcaatattgttaaaacgtctgtactacccaaagcaatctacaggttcagtgtaatccctatcaaaataccaatgacattcttcacagaaatag---aaaaaaaaatcctgaaatttatatggcatcacaaaagagac--aatagccaaagccatcctgagcaaaaaacaaaactggagaaatgtcattacctgactttaaattatactataatcacttcctggtctttttgggcttagatcaagtgcgaagtttactagaaaggtat-accaaaacagcatgatactggtataaaaacagacacatagaccactggaacagaatagagaacccaaaaacagatccatacatctacagtgaactcacctttgacagaggtgcccggaggatacatgagggaaaagatagcctcattgataaatggtgctgggaaaatgggacacccatatgcagaaaaatgaagctagaccgctatctctcaccgtatacaaaaatcacatcaaaatggagta-------------aagacttcagactatgaaagtgctaaaagaaaacattggggagactctccaggacattgcactgggtaatgatttcttgagtaatagcgtcgtaaacacaggcaaccaaagctaaaatggacaagtggggtcacatcgagttaaaaagcttctgcacagcaaaggaaacaacccacaaaatgaagagacaacccacagaatgggaaaaaaatatttgcaaactacacatctgacaagggattaataaccagaatatataattagctcaagcaactctatagg--aaaaaaatctaataatccaataaaaaggggcaaaagattggaatagacatttctcaaaagaagatatacagatgacaaacaggcaatatgaacaggtgctcaacatgattgatcgtcagagaagtgcaaatcaaaactacaatgggatattatctcaccctaattaaaatggcttatatccaaaag----acaagaacaaatgctggcaaggatatagagaaaagggaacccttgtgcactgttggtgggaatataaattagcacagccattatggagattagcttggaggttcctcaaaaaactaaaaataagactgtcatatgattcagcaatcccactggtaggtatatgcccagaggcaagaatatcagtatgttgaagaaatatgtacactctcatgtttattgcagcactattctcaatagccaagatttggaagcaacgtaagtgt-tcccagcagatga----atgaagaaaatgtggtatatacactcaatggagtactactaagtcat-aaaaagaatgggatactggtcgttt
i nomLeu3.chr6              C 0 I 894
s macNem1.NW_012011934v1       413419 1839 +   2379783 --tttttttttttttgaggtggagtctcactctgtggtgcaggctggaaagcagtggcacactcttggctcactgcaacctctgcctcctaggttcaagcgatcctcctgccttaaccacctgagtagctgggattacaggcgcctgccaccacacctggctagtttttgtatttttagtacagacatggtttcaccacgttggccagactggtct--------tgacctcaggtgatccgccagcctcggcctcccaaagtgctgggattacaggtatgagccactgcacccggccaagtcagtagcatttctatatgtcaacagtgaacagtatgagaaat--aaatcaagaaaaatgattccatttataatagctacaaataaagtaaaatacgtaggaataaacctaacccaagaagtgaaaagatctctaccatgaaaactgtaaagcattgatgcaggaaattgaagaagacacacaaaaaaggaaaagatactccatgttcatggattggaagaatcaatattgttaaaatgtctgtactacccagagcaatctacaggttcaatgtaatccgtatcaaaataccaataacattcttcacagaaatag---aaaaaaaaatcctgaaatttatatggaatcataaaagag----aatagccaaagccatcttgagcaaaaaacaaaactggagaaattgcattacctgacttgaaattatactacaatcacttcctggtcttttttggcttagatcaagtgcaaagtttactacaaaggtataaccaacagagcatggtactggtataaaaacagacacgtcgaccagtggaacagaatagagaacccagaaat-----catacatctacagtgaactcatcttt----ggggcctccggaggatgcatgagggaaaggatagtcttactgatgaatggtgctgggaaaatgagacacccatatgcagaaaaattaaattagactgctctctgtcaccacatacaaaaatcacgccaaaatagagtaaagacttatgcctaagacttcagactatgaaaatgctaaaagaaaacattggggaaactctccaggacattgcactgggtaatgatttcttgagtaata-cttcataaacacaggcacccaaagctaaaatggacacatggggtcacatcaagttaaaaagcttctgcacagcaaaggaaacagtcaacaaaatgaaaagacaacccacagaatggg-agaaaatacttgcaaattacccatcggacaaaggattaataaccagaatatataagcagctcaagcaactctgtaggaaaaaaaaatctaataatccaatacaaatgggcaaaagatttgaatagacatttct-----gaagatatacaaatgacaaacaggcaatatgagcaggtgctcaacacgagtgatcatcagagaaatgcaaatcaaaactacaatgagatattatctcaccctaattaaaatggcttatatccaaaagacaaacaagaacaaatgctggcaaggatatagagaaaagggaacccttgtacgctgttggtgggaatataaattagcacagccattatggagattagcttggaggttcctcaaaaaattaaaaataggactgtcatatgattcagcagtcccactggtaggtatatacccagaggaaagaatatcagtatgttgaagaaatatgtacattctcatgtttgttgcagcactattttcaatagccaagattttgaagcgaccttagtgtcccccagcagatgaacaggtgaagaaaatgtagtatatatactcaatggagtactgttcaactgtaaaaaagaatgggatact-gtcgttt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       378718 1850 +   4116138 tttttttttttttttgaggtggagtctcacgctgtggcgcaggctggaaagcagtggcacactcttggctcactgcaacctctgcctcctaggttcaagcgatcctcctgccttaaccacctgagtagctgggattacaggcgcctgccaccacacctggctagtttttgtatttttagtacagacatggtttcaccacgttggccagactggtcttgaactcctgacctcaggtgatccgccagcctcggcctcccaaagtgctgggattacaggtatgagccactgcacccggccaaatcagtagcatttctgtatgtcaacagtgaacagtatgagaaat--aaatcaagaaaaatgattccatttataatagctacaaataaagtaaaatacgtaggaataaacctaacccaagaagtgaaaagatctctaccatgaaaactgtaaagcactgatgcaggaaattgaagaagacacacaaaaaaggaaaagatactccatgttcatggattggaagaatcaatattgttaaaatgtctgtactacctagagcaatctacaggttcaatgtaatccctatcaaaataccaatgacattcttcacagaaatag----aaaaaaaatcctgaaatttatatagaatcataaaagag----aatagccaaagccatcctgagcaaaaaacaaaactggagaaattgcattacctgacttgaaattatactacaatcacttcctggtcttttttggcttagatcaagtgcaaagtttactacaaaggtataaccaacacagcatggtactggtataaaaacagacacgtcgaccaatggaacagaatagagaacccagaaataaatccatacatctacagtgaactcatcttt----gaggcatccggaggatacatgagggaaaggatagtcttattgatgaatggtgctgggaaaatgagacacccatatgcagaaaaattaaattagactgctctctgtcaccacatacaaaaatcacgtcaaaatagggtaaagacttatgcctaagacttcagactatgaaaatgctaaaagaaaacattggggaaactctccaggacattgcactgggtaatgatttcttgagtaata-cttcataaacacaggcacccaaagctaaaatggacacatggggtcacatcaagttaaaaagcttctgcacagcaaaggaaacagtcaacaaaatgaaaagacaacccacagaatggg-agaaaatacttgcaaattacccattggacaaggaattaataaccagaatatata---agctcaagcaactctgtaggaaaaaaaaatctaataatccaatacaaatgggcaaaagatttgaatagacatttct-----gaagatacacaaatgacaaacaggcaatatgagcaggtgctcaacatgagttatcatcagagaaatgcaaatcaaaactacaatgagatattatctcaccctaattaaaatggcttatatccaaaagacaaacaagaacaaatgctggcaaggatatagagaaaagggaacccttgtacgctgttggtgggaatataaattagcacagccattatggagattagcttggaggttcctcaaaaaactaaaaataggactgtcatatgattcagcaatcccactggtaggtatatacccagaggaaagaatatcagtatgttgaagaaatatgtacattctcatgtttgttgcagcactattttcaatagccaagatttggaagcgaccttagtgtcccccagcagatgaacaggtgaagaaaatgtagtatatatactcaatggagtactgttcaaccataaaaaagaatgggatact-gtcgttt
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       426610 1855 -   3636681 tttttttttttttttgaggtggagtctcactctgtggcgcaggctggaaagcaatggcacactcttggctcactgcaacctctgcctcctaggttcaagcgatcctcctgccttaaccacctgagtagctgggattacaggcgcctgccaccacacctggctagtttttgtatttttagtacagacatggtttcaccacgttggccagactggtcttgaactcctgacctcaggtgatccgccagcctcggcctcccaaagtgctgggattacaggtatgagccactgcacccggccaaatcagtagcatttctatatgttaacagtgaacagtatgagaaat--aaatcaagaaaaatgattccatttataatagctacaaataaagtaaaatacgtaggaataaacctaacccaagaagtgaaaagatctctatcgtgaaaactgtaaagcattggtgcaggaaattgaagaagacacacaaaaaaggaaaagatactccatgttcatggattggaagaatcaatattgttaaaatgtctgtactacccagagcaatctacaggttcagtgtaatccctatcaaaataccaatgacattcttcacagaaatag--aaaaaaaaaatcctgaaatttatatggaatcataaaagag----aatagccaaagccatcctgagcaaaaaacaaaactggagaaattgcattacgtgacttgaaattatactacaatcacttcctggtcttttttggcttagatcaagtgcaaagtttactacaaaggtataaccaacacagcatggtactggtataaaaacagacacgtcgaccaatggaacagaatagagaacccagaaataaatccatacatctacagtgaactcatcttt----gaggcatccggaggatacatgagggaaaggatagtcttattaatgaatggtgctgggaaaatgagacacccatatgcagaaaaattaaattagactgctctctgtcaccacatacaaaaatcacgtcaaaatagagtaaagacttatgcctaagacttcagactatgaaaatgctaaaagaaaacattggggaaactctccaggacattgcactgggtaatgatttcttgagtaata-cttcataaacacaggcacccaaagctaaaatggacacatggggtcacatcaagttaaaaagcttctgcacagcaaaggaaacagtcaacaaaatgaaaagacaacccacagaatggg-agaaaatacttgcaaattacccatcggacaagggattaataaccagaatatataagcagctcaagcaactctgtaggaaaaaaaaatctaataatccaatacaaatgggcaaaagatttgaatagacatttct-----gaagatatacagatgacaaacaggcaatatgagcaggtgctgaacatgagttatcatcagagaaatgcaaatcaaaactacaatgagatattatctcaccctaattaaagtggcttatatccaaaagacaaacaagaacaaatgctggcagggatatagagaaaagggaacccttgtacgctgttggtgggaatataaattagcacagccattatggagattagcttggaggttcctcaaaaaactaaaaataggactgtcatatgattcagcaatcccactggtaggtatatacccagaggaaagaatatcagtatgttgaagaaatatgtacattctcatgtttgttgcagcactattttcaatagccaagatttggaagcgaccttagtgtcccccagcagatgaacaggtgagggaaatgtagtatatatactcaatggagtactgttcaaccataaaaaagaatgggatact-gtcgttt
i manLeu1.NW_012102332v1    C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434773 1692 +  16154928 I
e canFam3.chr3               59932196  759 -  91889043 I
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e otoGar3.GL873689             355123  306 +   3845361 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e colAng1.NW_012115278v1       401842 8766 -   4457520 I
e rheMac8.chr7              164239791 6526 - 169600520 I
e chlSab2.chr26              53810992 2756 +  58131712 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55215966 6879 + 190850796 I
e macFas5.chr7              165560602 6522 - 171882078 I

a score=647575.000000
s hg38.chr15_KI270851v1_alt    158336 363 +    263054 gcaacaacatggatagaactggaggtcgttatgttaagtcaggaacagaatgtcatgagccagacccagaaaatcgaactttgcatgttctcacttatttgtaggtgctaagcaaatgaaagtaattgaactcatggagatagagtagaatgatggttatcagagactgggaaggataaagtgggggtgaagtgcggatggttaatgggtat-aaaaatggagttagatagggctgggcacagtggcttacgcctgtaatcccagctctttgggaggccaagtcaggtggatc---atgaggtcaagagacccagaccatcctggccaacacggtgaaaccccatctctaccaaaaatacaaaaatt
s panTro5.chr15              73730964 359 -  83230942 gcaacaacatggatagaactggaggtcgttatgttaagtcaggaaccgaatgtcatgagccagacccagaaaatcgaactttgcatgttctcacttatttgtaggtgctaagcaaatgaaagtaattgaactcatggagatagagtagaatgatggttatcagagactgggaaggataaagtgggggtgaagtgcggatggttaatgggtat-aaaaatggagttag----ggctgggcacagtggctgatgcctgtaatcccagctctttgggagggcaaggcaggtggatc---atgaggtcaagagacccagaccatcctggccaacacggtgaaaccccatctctaccaaaaatacaaaaatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74034531 359 -  99763055 gcaacaacatggatagaactggaggtcgttatgttaagtcaggaaccgaatgtcatgagccagacccagaaaatcgaactttgcatgttctcacttatttgtaggtgctaagcaaatgaaagtaattgaactcatggagatagagtagaatgatggttatcagagactgggaaggataaagtgggggtgaagtgcggatggttaatgggtat-aaaaatggagttag----ggctgggcacagtggctgacgcctgtaatcccagctctttgggagggcaaggcaggtggatc---atgaggtcaagagacccagaccatcctggccaacacggtgaaaccccatctctaccaaaaatacaaaaatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        83365 359 -    281578 gcaacaacatggatagaactggaggtcattatgttaagtcaggaacagaatgtcatgagccagacccagaaaatcgaactttgcatgttctcacttatttgtaggtgctaagcaaatgaaagtaattgaactcatggagatagagtagaatgatggttatcagagactgggaaggataaagtgggagtgaagtgcggatggttaatgggtat-aaaaatggagttag----ggctgggcacagtggctgacgcctgtaatcccagctctttgggaggccaaggcaggtggatc---atgaggtcaagagacccagaccatcctggccaacacggtgaaaccccatctctaccaaaaatacaaaaatt
i gorGor5.CYUI01000141v1    C 0 C 0
s macNem1.NW_012011934v1       415258 367 +   2379783 gcaacaacatggatacaactggaggtcattatgttaagtcagggacagaatgtcatgagccagatccagaaaaacaaactttgcatgttctcactaatttgtaggagctaagcaaatgaaagcaattgaactcatggagatagagtagaatgatggttatcagagacagggaaggataaagtgggggtgaagtacagacagttaatgggtataaaaaatggaattagatagggctgggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcatgatgaggtcaagagacccagaccatcctgaccgacatggtgaaaccccatctctaccaaaactacaaaaatt
i macNem1.NW_012011934v1    C 0 M 930
s cerAty1.NW_012001462v1       380568 366 +   4116138 gcaacaacatggatacaactggaggtcattatgttaagtcagggacagaatgtcatgagccagatccagaaaaacaaactttgcatgttctcactaatttgtaggagctaagcaaatgaaagcaattgaactcatggagatagagtagaatgatggttatcagagacagggaaggataaagtgggggtgaagtacagacagttaatgggtat-aaaaatggaattagatagggctgggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcatgatgaggtcaagagacccagaccatcctgaccgacatggtgaaaccccatctctaccaaaactacaaaaatt
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       428465 364 -   3636681 gcaacaacatggatacaactggaggtcattatgttaagtcagggac--aatgtcatgagccagatccagaaaaacaaactttgcatgttctcactaatttgtaggagctaagcaaatgaaagcaattgaactcatggagatagagtagaatgatggttatcagagacagggaaggataaagtgggggtgaagtacagacagttaatgggtat-aaaaatggaattagatagggctgggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcatgatgaggtcaagagaccgagaccatcctgaccgacatggtgaaaccccatctctaccaaaactacaaaaatt
i manLeu1.NW_012102332v1    C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434773 1692 +  16154928 I
e canFam3.chr3               59932196 759 -  91889043 I
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e otoGar3.GL873689             355123 306 +   3845361 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e nomLeu3.chr6               70940927 894 + 121039945 I
e colAng1.NW_012115278v1       401842 8766 -   4457520 I
e rheMac8.chr7              164239791 6526 - 169600520 I
e chlSab2.chr26              53810992 2756 +  58131712 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55215966 6879 + 190850796 I
e macFas5.chr7              165560602 6522 - 171882078 I

a score=189540.000000
s hg38.chr15_KI270851v1_alt    158699 161 +    263054 agctgggtgtggtggtgtgagcctgtagtcccagctactcgggaggctgaggcaggagaaacccttgaacccagaaggcaaaggttgcagtgagctgagatcgcacaactgcactccagcttagtgccagaacgagatccgtctc-caaaaaaaaaaGA---GTT
s panTro5.chr15              73731323 164 -  83230942 agctgggtgtggtggtgtgagcctgtagtcccagctactctggaggctgaggcaggagaaacccttgaacccagaaggcaaaggttgcagtgagctgagattgcacaactgcactccagcttagtgccagaacgagatccgtctc-aaaaaaaaaaaaaaaagtt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74034890 159 -  99763055 agctgggtgtggtggtgtgagcctgtagtcccagctactctggaggctgaggcaggagaaacccttgaacccagaaggcaaaggttgcagtgagctgagattgcacaactgcactccagcttagtgccagaacgagatccgtctc-aaaaaaaaaaaaG-----T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        83724 162 -    281578 agctgggtgtggtggtgtgagcctgtagtcccagctactccggaggctgaggcaggagaaacccttgaacccagaaggcaaaggttgcagtgagctgagatcgcacaactgcactccagcttagtgccagaacgagatccgtctc-aaaaaaaaaaaaa--agtg
i gorGor5.CYUI01000141v1    C 0 C 0
s cerAty1.NW_012001462v1       380934 162 +   4116138 agctgggtattgtggcatgagcctgtagtccctgctactcgggaggctgaggcaggagaatcgcttgaacctgaaaggtgaaggttgcactgagtcaagatcgcagcactgcactccagcctagcgccagagcaagatccgtctc-aaaaaaaaaaaag--agtt
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       428829 163 -   3636681 agctgggtatggtggcatgagcctgtagtccctgctactcgggaggctgaggcaggagaatcgcttgaacctgaaaggtgaaggttgcactgagccaagatcgcagcactgcactccagcctagcgccagagcaagatccgtctcaaaaaaaaaaaaag--agtt
i manLeu1.NW_012102332v1    C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434773 1692 +  16154928 I
e canFam3.chr3               59932196 759 -  91889043 I
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e otoGar3.GL873689             355123 306 +   3845361 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e nomLeu3.chr6               70940927 894 + 121039945 I
e colAng1.NW_012115278v1       401842 8766 -   4457520 I
e macNem1.NW_012011934v1       415625 930 +   2379783 M
e rheMac8.chr7              164239791 6526 - 169600520 I
e chlSab2.chr26              53810992 2756 +  58131712 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55215966 6879 + 190850796 I
e macFas5.chr7              165560602 6522 - 171882078 I

a score=12625.000000
s hg38.chr15_KI270851v1_alt    158860 7 +    263054 AGATAGA
s panTro5.chr15              73731487 7 -  83230942 agataga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74035049 7 -  99763055 TGATAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        83886 7 -    281578 agataga
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70941821 7 + 121039945 aaatagc
i nomLeu3.chr6              I 894 C 0
s cerAty1.NW_012001462v1       381096 7 +   4116138 agataga
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       428992 7 -   3636681 agataga
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr3               55222845 7 + 190850796 aaatagt
i calJac3.chr3              I 6879 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434773 1692 +  16154928 I
e canFam3.chr3               59932196 759 -  91889043 I
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e otoGar3.GL873689             355123 306 +   3845361 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e colAng1.NW_012115278v1       401842 8766 -   4457520 I
e macNem1.NW_012011934v1       415625 930 +   2379783 M
e rheMac8.chr7              164239791 6526 - 169600520 I
e chlSab2.chr26              53810992 2756 +  58131712 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e macFas5.chr7              165560602 6522 - 171882078 I

a score=12300.000000
s hg38.chr15_KI270851v1_alt    158867 8 +    263054 ATATATAA
s panTro5.chr15              73731494 8 -  83230942 atatataa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74035056 8 -  99763055 GTATATAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        83893 8 -    281578 atatataa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70941828 8 + 121039945 ccatgtag
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165567124 7 - 171882078 atatata-
i macFas5.chr7              I 6522 I 2
s cerAty1.NW_012001462v1       381103 8 +   4116138 atgtataa
i cerAty1.NW_012001462v1    C 0 I 183
s manLeu1.NW_012102332v1       428999 8 -   3636681 atgtataa
i manLeu1.NW_012102332v1    C 0 I 284
s calJac3.chr3               55222852 8 + 190850796 tcatgtaa
i calJac3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434773 1692 +  16154928 I
e canFam3.chr3               59932196 759 -  91889043 I
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e otoGar3.GL873689             355123 306 +   3845361 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e colAng1.NW_012115278v1       401842 8766 -   4457520 I
e macNem1.NW_012011934v1       415625 930 +   2379783 M
e rheMac8.chr7              164239791 6526 - 169600520 I
e chlSab2.chr26              53810992 2756 +  58131712 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=6070.000000
s hg38.chr15_KI270851v1_alt    158875 7 +    263054 CCCATAT
s panTro5.chr15              73731502 7 -  83230942 CCCatat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74035064 7 -  99763055 CCCATAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        83901 7 -    281578 CCCatat
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70941836 7 + 121039945 gccatat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165567133 3 - 171882078 ccc----
i macFas5.chr7              I 2 C 0
s calJac3.chr3               55222860 7 + 190850796 cccatgc
i calJac3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434773 1692 +  16154928 I
e canFam3.chr3               59932196 759 -  91889043 I
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e otoGar3.GL873689             355123 306 +   3845361 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e colAng1.NW_012115278v1       401842 8766 -   4457520 I
e manLeu1.NW_012102332v1       429007 284 -   3636681 I
e cerAty1.NW_012001462v1       381111 183 +   4116138 I
e macNem1.NW_012011934v1       415625 930 +   2379783 M
e rheMac8.chr7              164239791 6526 - 169600520 I
e chlSab2.chr26              53810992 2756 +  58131712 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=14810.000000
s hg38.chr15_KI270851v1_alt    158882 4 +    263054 ATAT
s panTro5.chr15              73731509 4 -  83230942 atat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74035071 4 -  99763055 ATAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        83908 4 -    281578 atat
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70941843 4 + 121039945 atat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164246317 4 - 169600520 atat
i rheMac8.chr7              I 6526 C 0
s macFas5.chr7              165567136 4 - 171882078 atat
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       381294 4 +   4116138 atat
i cerAty1.NW_012001462v1    I 183 C 0
s chlSab2.chr26              53813748 4 +  58131712 atat
i chlSab2.chr26             I 2756 C 0
s colAng1.NW_012115278v1       410608 4 -   4457520 atat
i colAng1.NW_012115278v1    I 8766 C 0
s calJac3.chr3               55222867 3 + 190850796 ata-
i calJac3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434773 1692 +  16154928 I
e canFam3.chr3               59932196 759 -  91889043 I
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e otoGar3.GL873689             355123 306 +   3845361 I
e cebCap1.NW_016107707v1       296045 7428 -   2086007 I
e manLeu1.NW_012102332v1       429007 284 -   3636681 I
e macNem1.NW_012011934v1       415625 930 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=5005.000000
s hg38.chr15_KI270851v1_alt    158886 1 +    263054 A
s panTro5.chr15              73731513 1 -  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74035075 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        83912 1 -    281578 a
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70941847 1 + 121039945 a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164246321 1 - 169600520 a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165567140 1 - 171882078 a
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       381298 1 +   4116138 a
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53813752 1 +  58131712 a
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115278v1       410612 1 -   4457520 a
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       303473 1 -   2086007 a
i cebCap1.NW_016107707v1    I 7428 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434773 1692 +  16154928 I
e canFam3.chr3               59932196 759 -  91889043 I
e aotNan1.NW_018503298v1       361948 6850 +   3831555 I
e otoGar3.GL873689             355123 306 +   3845361 I
e manLeu1.NW_012102332v1       429007 284 -   3636681 I
e macNem1.NW_012011934v1       415625 930 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55222870 0 + 190850796 C

a score=164527.000000
s hg38.chr15_KI270851v1_alt    158887 33 +    263054 TA--------CATACAACTAGTGTGTATCCACAGAAGTT------------------AA
s panTro5.chr15              73731514 44 -  83230942 ta--tatatacataCAACTAGTGTGTATCCACAGAAGTT-------------Taaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74035076 51 -  99763055 TA--------CATACAACTAGTGTGTATCCACAGAAGTTNNNNNNNNNNNNNNNNNNNN
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        83913 44 -    281578 tatatatatacataCAACTAGTGTGTATCCACAGAAGTT---------------AAAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70941848 39 + 121039945 ta------cacatacaactagtgtgtatccacagaagtt--------------aaaaaA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164246322 31 - 169600520 ta--------catacaactagtgtgtatccacagaagtt--------------------
i rheMac8.chr7              C 0 I 5
s macFas5.chr7              165567141 31 - 171882078 ta--------catacaactagtgtgtatccacagaagtt--------------------
i macFas5.chr7              C 0 I 7
s cerAty1.NW_012001462v1       381299 31 +   4116138 ta--------catacaactagtgtgtatccacagaagtt--------------------
i cerAty1.NW_012001462v1    C 0 I 3
s chlSab2.chr26              53813753 31 +  58131712 ta--------catacaactagtgtgtatccacagaagtt--------------------
i chlSab2.chr26             C 0 I 4
s colAng1.NW_012115278v1       410613 31 -   4457520 ta--------catacaactagtgtgtatccatagaagtt--------------------
i colAng1.NW_012115278v1    C 0 I 2
s calJac3.chr3               55222870 29 + 190850796 ----------catgcaactagtgtgtatctacagaagtt--------------------
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       303474 31 -   2086007 ta--------catacagctagtgtgtatctacagaagtt--------------------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       368798 31 +   3831555 ta--------catacaactagtctgtatctacagaagtt--------------------
i aotNan1.NW_018503298v1    I 6850 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434773 1692 +  16154928 I
e canFam3.chr3               59932196 759 -  91889043 I
e otoGar3.GL873689             355123 306 +   3845361 I
e manLeu1.NW_012102332v1       429007 284 -   3636681 I
e macNem1.NW_012011934v1       415625 930 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=38352.000000
s hg38.chr15_KI270851v1_alt    158920 7 +    263054 AAAAAAA
s panTro5.chr15              73731558 7 -  83230942 aaaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74035127 7 -  99763055 AAAAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        83957 7 -    281578 AAAAAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70941887 7 + 121039945 AAAAAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164246358 7 - 169600520 AAAAAAA
i rheMac8.chr7              I 5 C 0
s macFas5.chr7              165567179 7 - 171882078 AAAAAAA
i macFas5.chr7              I 7 C 0
s cerAty1.NW_012001462v1       381333 7 +   4116138 aaAAAAA
i cerAty1.NW_012001462v1    I 3 C 0
s chlSab2.chr26              53813788 7 +  58131712 aAAAAAA
i chlSab2.chr26             I 4 C 0
s manLeu1.NW_012102332v1       429291 7 -   3636681 AAAAAAA
i manLeu1.NW_012102332v1    I 284 C 0
s colAng1.NW_012115278v1       410646 5 -   4457520 --aaaAA
i colAng1.NW_012115278v1    I 2 C 0
s calJac3.chr3               55222899 3 + 190850796 ----aaa
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       303505 2 -   2086007 -----aa
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       368829 6 +   3831555 -aaaaaA
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434773 1692 +  16154928 I
e canFam3.chr3               59932196 759 -  91889043 I
e otoGar3.GL873689             355123 306 +   3845361 I
e macNem1.NW_012011934v1       415625 930 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=946222.000000
s hg38.chr15_KI270851v1_alt    158927 133 +    263054 AAAAGATGGGCAAACATCTGT--CTCTTTT--AATTAAAAATGGC----------TTTTGTTTT-----------------GCCAGACAAGGGAGCTTCTGTCACATACGCAGTTTTCAGAATGGATGCCTTCCCCCAGTGTCTGAAATGCTCCCTTTTCCTGT-----------
s panTro5.chr15              73731565 143 -  83230942 aaaaGATGGGCAAACATCTGTGTCTCTTTT--AATTAAAAATGGC----------ttttttttt---------ttttttttGCCAGACAAGAGAGCTTCTGTCGCATACGCAGTTTTCAGAATGGATGCCTTCCCCCAGTGTCTGAAATGCTCCCTTTTCCTGT-----------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74035134 143 -  99763055 AAAAGAGTGGCAAACATCTGTGTCTTCTTTTAAATTAAAAGTGGC----------TTTTTTTTT----------TTTTTTTGCCAGACAAGAGAGCTTCTGTCGCATACGCAGTTTTCAGAATGGATGCCTTCCCCCAGTGTCTGAAATGCTCCC-TTTCCTGT-----------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        83964 152 -    281578 AAAAGATGGGCAGACATCTGTGTCTCTTTT--AATTAAAAATGGC----------ttttttttttttttttttttttttttGCCAGACAAGGGAGCTTCTGTTGCATATGCAGTTTTCAGAATGGATGCTTTCCCCCAGTGTCTGAAATGCTCCCTTTTCCTAT-----------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70941894 151 + 121039945 AAAAGATGGGCAAACATCTGTGTCTCTTTT--AATTAAAAATGGC----------ttttttttt-ttttttttttttttttGCCAAACAAGGGAGCTTCTGTCGCATACGCAGTTTTCAGAATGGATGCCTTCCCCCAGTGTCTGAAATGCTCCCTTTTCCTGT-----------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164246365 144 - 169600520 AAAAGATGGGCAAACA------TCTCTTTT--AATTAAAAATGGCttttttttttttttttttt----------tttttttGCCAGACAAGGGGGCTTCTGTTGCAT--ACAGTTTTCAGGATGGATGCCTTCCCCCAGTGTCTGAAATGCCCCCTTTTCCTGT-----------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165567186 144 - 171882078 AAAAGATGGGCAAACA------TCTCTTTT--AATTAAAAATGGCttttttttttttttttttt----------tttttttGCCAGACAAGGGGGCTTCTGTTGCGT--ACAGTTTTCAGGATGGATGCCTTCCCCCAGTGTCTGAAATGCCCCCTTTTCCTGT-----------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       381340 135 +   4116138 AAAAGATGGGCAAACA------TCTCTTTT--AATTAAAAATGGC-----------TTTTTTTT----------TTTTTTTGCCAGACAAGGGGGCTTCTGTTGCATACACAGTTTTCAGGATGGATGCCTTCCCCCAGTGTCTGAAATGCCCCCTTTTCCTGT-----------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53813795 136 +  58131712 AAAAGATGGGCAAACA------TCTCTTTT--AATTAAAAATGGC----------TTTTTTTTT----------TTTTTTTGCCAGACAAGGGGGCTTCTGTTGCATACACAGTTTTCAGGATGGATGCCTTCCCCCAGTGTCTGAAATGCCCCCTTTTCCTGT-----------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       429298 139 -   3636681 AAAAGATGGGCAAACA------TCTCTTTT--AATTAAAAATGGC-------tttttttttttt----------tttttttGCCAGACAAGGGGGCTTCTGTTGCATACACAGTTTTCAGGATGGATGCCTTCCCCCAGTGTCTGAAATGCCCCCTTTTCCTGT-----------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       410651 141 -   4457520 AAAAGATGGGCAAACATCTGAGTCTCTTTT--AATTAAAAATGGC-----------TTTTTTTT----------TTTTTTTGCCAGACAAGGGGGCTTCTGTTGCATACACAGTTTTCAGAATGGATGCCTTCCCCCAGTGTCTGAAATGACCCCTTTTCCTGT-----------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55222902 137 + 190850796 aaAAAATGGGCGAACATACTGGTCTCTTTT--AATTAAAAATGCC--------------TTTTT----------TTTTTTTTCCAGACAAGAGGGCTTCTGTTGCATACGTAGTTTTCAGAATGGATGCCTTCCCCCA-TGTCTGAAATGCTGTCTTTTCCTGT-----------
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       303507 133 -   2086007 aaaAAATGGGCAAACATATTGGTCTCTTTT--AATTAAAAATGC------------------TT----------TTTTTTGGCCAAACAAGAGGGCTTCTGTTGCATTTGCAGTTTTCAGAATGGATGCCTTCCCCCA-TGTCTGAAATGCTGTCTTTTCCTGT-----------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       368835 141 +   3831555 AAAAAATGGGCGAACATATTGATCTCCTTT--AATTAAAAATGCC----------TTTTTTTTT----------TTTTTTTGCCAGACAAGAGGGCTTCTGTTGCATATGCAGTTTTCAGAATGGATGCCTTCCCCCA-TGTCTGAAATGCTGTCTTTTCCTGT-----------
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59932955 143 -  91889043 aaaagatggccaaagagatgtgcctttTTT--AGTGTAAGGTGTA----------TTGTGTTTA----------T----------GATAAGAGGGCTTCTGTTGTACCTGCAGTTTTCAGAATGGAGGCCTTCTCTGGGTGTCCACCAGGCCCCTGCCCCTTGTTGGCTGCTTGC
i canFam3.chr3              I 759 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13434773 1692 +  16154928 I
e otoGar3.GL873689             355123 306 +   3845361 I
e macNem1.NW_012011934v1       415625 930 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=263102.000000
s hg38.chr15_KI270851v1_alt    159060 35 +    263054 TCTGGG-AAGCCTTTTCTGACTCACAAATGTTGACA
s panTro5.chr15              73731708 35 -  83230942 TCTGGG-AAGCCTTTTCTGACTCACAAATGTTGACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74035277 35 -  99763055 TCTGGG-AAGCCTTTTCTGACTCACAAATGTTGACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        84116 35 -    281578 TCTGGG-AAGCCTTTTCTGACTCACAAATGTTGACA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70942045 35 + 121039945 TCTGGG-AAGCGTTTTCTGACTCACAAATGTTGACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164246509 32 - 169600520 TCTGG----GCCTTTTCTGACTCACAAATGTTGATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165567330 32 - 171882078 TCTGG----GCCTTTTCTGACTCACAAATGTTGATA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       381475 32 +   4116138 TCTGG----GCCTTTTCTGACTCACAAATGTTGACA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53813931 32 +  58131712 TCTGG----GCCTTTTCTGACTCACAAATGTTGACA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       429437 32 -   3636681 TCTGG----GCCTTTTCTGACTCACAAATGTTGACA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       410792 32 -   4457520 TCTGG----GCCTTTTCTGACTCATAAATGTTGACA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55223039 35 + 190850796 TCTGGG-AAAGCTTTTCTGACTCACAAATGCTGACG
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       303640 35 -   2086007 TCTGGG-AAAGCTTTTCTGACTCACAAATGCTGATG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       368976 36 +   3831555 TCTGGGAAAAGCTTTTCTGACTAACAAATGCTGATG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13436465 35 +  16154928 TCTGGG-AAAACTTTTCTGACTCACAAATGCTGACA
i proCoq1.NW_012148396v1    I 1692 I 1477
s canFam3.chr3               59933098 35 -  91889043 TCTGAG-AAGCCTGTTCTGACTCCTGAATACCGACA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e otoGar3.GL873689             355123 306 +   3845361 I
e macNem1.NW_012011934v1       415625 930 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=2202245.000000
s hg38.chr15_KI270851v1_alt    159095 348 +    263054 AGCAAAGGCATTTTTGATTTTGATGCTCACAGTTATT-ATAATTATTATAAATTTGGCCAGGAGTCCCTATCA-TCTTTGAACAGCTGC-----------------------------tttttttttttttttttttttttttttttttgagataaagtcttgctc-tgtcacccaggctggagtgcagtggcacagtcttggcccactgtaacctccgcctcctgggttcaggctattctcctgcctcagcctcccaagtagctgggattatgggcg-cctgccaccatgcccagctaatttttgtatttttagaagagatggggtttcggcatgttggctaggctggtctcgaac--tcctgacctcaagtgatctgcccg
s panTro5.chr15              73731743 332 -  83230942 AGCAAAGGCGTTTTTGATTTTGATGCTCACAGTTATT-ATAATTATTATAAATTTGGCCAGGAGTCCCTATCAGTCTTTGAACAGCTGC-----------------------------tttttttttttttt-----------------gaggtaaagtcttgctc-tgtcacccaggctggagtgcggtggcatagtctcggcccactgcaaccttggcctcctgggttcaggctattctcctgcctcagcctcccaagtagctgggattatgggcg-cctgccaccatgcccagctaatttttgtatctttagaagagacggggtttcagcatgttggctaggctggtctcgaac--tcctgacctcaagtgatctgcccg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74035312 334 -  99763055 AGCAAAGGCGTTTTTGATTTTGATGCTCACAGTTATT-ATAATTATTATAAATTTGGCCAGGAGTCCCTATCAGTCTTTGAACAGCTGC-----------------------------tttccttttttttt----------------tgaggtaaagtcttgctc-tgtcacccaggctggagtgcagtggcatagtctcggcccactgcaaccttggcctcctgggttcaggctattctcctgcctcagcctcccaagtagctgggattatgggcgtcctgccaccatgcccagctaatttttgtatttttagaagagacggggtttcagcatgttggctaggctggtctcaaac--tcctgacctcaagtgatctgcccg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        84151 348 -    281578 AGCAAAGGCGTTTTTGATTTTGATGCTCACAGTTCTT-ATAATTATTATAAATTTGGCCAGGAGTCCCTATCAGTCTTTGAACAGCTGC-----------------------------tttttttttttttt-ttttttttttttttttgaggtaaagtcttggtc-tgtcacccaggctggagtgcagtggcatagtctcggcccactgcaacttcggcctcctgggttcaggctattctcctgcctcagcctcccaagtagctgggattatgagcg-cctgccaccatgcccagctaatttttgtatttttagaagagacggggtttcagcatgttggctaggctggtctcgaac--tcctgacctcaagtgatctgcccg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70942080 340 + 121039945 AGCAAAGGCGTTTTTGATTTTGATGCTCACAGTTATT-ATAATTATTATAAATTTGGCCAGGAgtccctatcagtctttgaacagctgc-----------------------------cttttttttttttt---------ttttttttgagataaagtcttgctc-tgtcacccaggctggagtgcagtggcacagtctcagcccactacaacctccgcctcctgggttcaggctcttgccctgcctcagcctcccgagtagctgggattatgggtg-cctgccaccatgcccaactacttttcgtatttttagaagagacagggtttcaccatgttggctaggctggtctcgaac--tcctgacctcaagtgatcggcctg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164246541 329 - 169600520 AGCAAAGGTGTTTTTGATTTTGATGTTCACAGTTATT-ATAATTATTATAAATTTGGCCAGGAGTccctatcagtctttgaacagctgc-----------------------------tttttttttttttt---------------ttgagataaagtcttgctc-tgtcacccaggctggagtgcagtggcacagtcttggcccactgcaacctccgcctcctgggttcaagctattctcctgcctcagcctcccgagtagctgggattatgggca-tctgccaccatgcccaactaatttttgtagttttagaagagatgaggtttcaccatgtt-----ggctggtcttgaac--tcctgacctcaagtgatctgcccg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165567362 329 - 171882078 AGCAAAGGTGTTTTTGATTTTGATGTTCACAGTTATT-ATAATTATTATAAATTTGGCCAGGAgtccctatcagtctttgaacagctgc-----------------------------tttttttttttttt---------------ttgagataaagtcttgctc-tgtcacccaggctggagtgcagtggcacagtcttggcccactgcaacctccgcctcctgggttcaagctattctcctgcctcagcctcccgagtagctgggattatgggca-tctgccaccatgcccaactaatttttgtagttttagaagagatgaggtttcaccatgtt-----ggctggtcttgaac--tcctgacctcaagtgatctgcccg
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       381507 337 +   4116138 AGCAAAGGTGTTTTTGATTTTGATGTTCACAGTTATT-ATAATTATTATCAATTTGGCCAGGAGTccctatcagtctttgaacagctgc---------------------cttttttttttttttttttttt---------------ttgagataaagtcttgctc-tgtcacccaggctggagtgcagtggcacagtcttggcccactgcaacctccacctcctgggttcaagctattctcctgcctcagcctcccgagtagctgggattatgggca-tctgccaccatgcccaactaatttttgtagttttagaagagacgaggtttcaccatgtt-----ggctggtcttgaac--tcatgacctcaagtgatctgcccg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53813963 362 +  58131712 AGCAAAGGTGTTTTTGATTTTGATGTTCACAGTTATT-ATAATTATTATAAATTTGGCCAGGAgtccctatcagtctgtgaacagctgcTTTGtgtttttttttgtttttttttgttttttttgtttttttt---------------ttgagataaagtcttg-tt-tgtcacccaggctggagtgccgtggcacagtcttggcccactgcaacctctgcctcctgggttcaagctattctcctgcctcagcctcccgagtagctgggattatgggca-tctgccaccatgcccaactaatttttgtagttttagaagagacgaggtttcaccatgttggccaggctggtcttgaac--tcctgacctcaagtgatctgccca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       429469 330 -   3636681 AGCAAAGGTGTTTTTGATTTTGATGTTCACAGTTATT-ATAATTATTATAAATTTGGCCAGGAGTccctatcagtctttgaacagctgc----------------------------ttttttttttttttt---------------ttgagataaagtcttactc-tgtcacccaggctggagtgcagtggcacagtcttggcccactgcaacctccgcctcctgggttcaagctattctcctgcctcagcctccagagtagctgggattatgggca-tctgccaccatgcccaactaatttttgtagttttagaagagacgaggtttcaccatgtt-----ggctggtcttgaac--tcctgacctcaagtgatctgcccg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       410824 332 -   4457520 AGCAAAGGTGTTTTTGATTTTGATGCTCACAGTTATT-ATAATTATTATAAATTTGGCCAGGAgtccctatcagtctttgaacagctgc-------------------------------tttttttttttt---------------ttgagataaagtcttgctc-tgtcacccaggctggagtgcagtggcacagtcttggcccactgcagcctccgcctcctgggttcaggctgttctcctgcctcagcctcccaagtagctgggattatgggca-tctgtcaccacgcccaactaatttttgtagttttagaagagatgaggtttcaccatgttggccaggctggtcttgaac--tcctgacgttaagtgatctgcctg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55223074 325 + 190850796 AGCAAAGCTGGTTTTCATGTTGATATTCACAGTGGTT-GTAATTATTTTAAATTTGGCC-GGAGTCTTTATCAGTCTTTGAATAGCttt-----------------------------tttttttt-----------------------gagatgaagtctcgctcttgttatcctggctggaatgcagtggcacaatctcagctcactgcaactttcgcctcctgggttcaagctattctcctgcctcagcctactgagtacctggggttacaggcg-cctgccaccatgcccaactaatttttgtatttttagtaaagacggggttttgcgatgttggccaggctgatctcaaac--tcctgacctcaagtgatctgcca-
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       303675 338 -   2086007 AACAAAGGTGGTTTTCATTTTGATACTCACAGTTGTTAATAATTATTTTAAAGCTGGCCGGGAGTCTTTATCAGTCTTTTAATAGCttt-----------------------------tttttttttttttt-----------tttttggagacgaagtctcgctcttgatatcctggttagagtgcagt-gcacaatcttggctcactgcaacttttgcctcctgggttcaagcgattctcctgcctcagcctactgagtagctggggttacaggtg-cctgccaccatgcccaaataatttttgtatttttagtaaagacggggttttgcgatgttggccaggctgatctcaaac--tcctgacctcaagtgatctgcca-
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       369012 330 +   3831555 AGCAAAGGTGGTTTTCATTTTGATATTCACAGTTGTT-ATAATTATTTTAAATTTGGCCGGGAGTCTTTATCAGTCTTTCAATAGCttt-----------------------------ttttttttttttt------------------gagatgaagtctcgctcttgttatcgtggctggagtacagt-gcacaatctcggctcactgcaactttcgcctcctgagttcaagctattctcctgcctcagcctactgagtagctggggttacaggca-tctgccaccatgcccaactaatttttgtatttttagtaaagacggagttttgcgatgttggccaggctgatctcaaac--tcctgacctcaagtgatctgcca-
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59933133 164 -  91889043 AGTGAGAGCATTTTTGCTTTTTGTTTTT-TATCTTTG-AATAtcattgtggacttg------------------------------tgt-----------------------------ttttatttattttt-----------------------------------------------------gcagt--------------ccactgcagtttt----------------------------------------------------------gta-ttt----tgatgctcag--aattgttttaaatttagccagtaggG----TCGCCATA------AGGCT----TTAAACTTTTTTGGTTCCAA------------
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I
e otoGar3.GL873689             355123 306 +   3845361 I
e macNem1.NW_012011934v1       415625 930 +   2379783 M
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=1949168.000000
s hg38.chr15_KI270851v1_alt    159443 249 +    263054 cctcagcctcccaaaatgctaggattataggcgtgagccaccgcacctggccATGTTTGAGGAAACAGCTTTTTCTTTGAGGAAA----------caggctcatctttgtctgccctggcccttgaatctactta-ttt-tcccaagagccctagcgtcttttatcgggaaatggttctaagagaccaaaatctgggtg-------------ccgctgtcagattgcctttgattctag-tccttt-aaaaaacagagtaagcaaatatattcaaa
s panTro5.chr15              73732075 249 -  83230942 cctcagcctcccaaaatgctaggattataggcgtgagccaccgcacctggccATGTTTGAGGAAACAGCTTTTTCTTTGAGGAAA----------caggctcatctttgtctgccctggcccttgaatctactta-ttt-tcccaagagccctagcgtcttttatcgggaaatggttctgagagaccaaaatctgggtg-------------ccgctgtcagattgcctttgattctag-tccttt-aaaaaacagagtaagcaaatatattcaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74035646 248 -  99763055 cctcagcctcccaaaatgctaggattataggcgtgagccaccgcacctggccATGTTTGAGGAAACAGCTTTTTCTTTGAGGAAA----------caggctcatctttgtctgccctggcccttgaatctactta-ttt-tccgaagagccctagcgtcttttatcgggaaatggttctgagagaccaaaatctgggtg-------------ccgctgtcagattgcctttgattctag--ccttt-aaaaaacagagtaagcaaatatattcaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        84499 250 -    281578 cctcagcctcccaaaatgctaggattataggcgtgagccaccgcacctggccATGTTTGAGGAAACAGCTTTTTCTTTGAGGAAA----------caggatcatctttgtctgccctggcccttgaatctactta-ttt-tcccaagagccctagcgtcttttattgggaaatggttctgagagaccaaaatctgggtg-------------ccgctgtcagattgcctttgattctag-tcctttaaaaaaacagagtaagcaaatatattcaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70942420 253 + 121039945 cctcagcctcccaaagtgctaggattataggcgtgagccactgcacctggccgtg--------aacagctttttctttgaggaaacaagatattccaggctcatcttggtctgccctggcccttgaatctactta-ttt-tcccaagagccctagtgtcttttattgggaaatagttctgagagaccaaaatctgggtgt------------ttgctgtcagattgccattgattctag-tcctttcaaaaaacagagtaagcaaatatattcaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164246870 251 - 169600520 cctcagcctcccatagtgctacgattataggcgtgagctaccgcacctggccatg--------agtagctttttctttgaggaaacaagatattccagactcatctttgtgtgccccggcccttgaatctcat---ttt-ccccaagagtcctagcttcttttattgggaaatggtactcagagaccaaaatctgggtgc------------ctgaggtcaggttgccattgattctgg-tccttccaaaaaacagagtaagcaaacatatgcaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165567691 251 - 171882078 cctcagcctcccatagtgctacgattataggcgtgagctaccgcacctggccatg--------agtagctttttctttgaggaaacaagatattccagactcatctttgtctgccccggcccttgaatctcat---ttt-ccccaagagtcctagcttcttttattgggaaatggtactcagagaccaaaatctgggtgc------------ctgaggtcaggttgccattgattctgg-tccttccaaaaaacagagtaagcaaacatatgcaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       416555 251 +   2379783 cctcagcctcccatagtgctacgattataggcgtgagctaccgcacctggccATG--------AGtagctttttctttgaggaaacaagatattccagactcatctttgtctgccccggcccttgaatctcat---ttt-ccccaagagtcctagcttcttttattgggaaatggtactcagagaccaaaatctgggtgc------------ctgaggtcaggttgccattgattctgg-tccttccaaaaaacagagtaagcaaacatatgcaaa
i macNem1.NW_012011934v1    M 930 C 0
s cerAty1.NW_012001462v1       381844 251 +   4116138 cctcagcctcccgtagtgctacgattataggcgtgagctaccgcacctggccatg--------agtagctttttctttgaggaaacaagatattccagactcatctttgtctgccccggcccttgaatctcat---ttt-ccccaagagtcctagctgcttttattgggaaatggtactcagagaccaaaatctgggtgc------------ctgaggtcaggttgccattgattctgg-tccttccagaaaacagagtaagcaaacatatgcaaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53814325 251 +  58131712 cctcagcctcccatagtgccacgattataggtgtgagctaccgcaccgggccatg--------aatagctttttctttgaggaaacaagatattccagactcatctttgtctgccctggcccttgaatctcat---tta-ccccaagagtcctagcttcttttattgggaaatggtactcagagaccaaaatctgggtgc------------ctgaggtcaggttgccattgattatag-tccttccaaaaaacagagtaagcaaacatatgcaaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       429799 251 -   3636681 cctcagcctcccgtagtgctacgattataggcgtgagctaccgcacctggccatg--------agtagctttttctttgaagaaacaagatattccagactcatctttgtgtgccccggcccttgaatctcat---ttt-ccccaagagtcctagcttcttttattgggaaatggtactcagagaccaaaatctgggtgc------------ctgaggtcaggttgccattgattctgg-tccttccaaaaaacagagtaagcaaacatacgcaaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       411156 251 -   4457520 cctcagcctcccatagtgctaggattataggcatgagccaccgcacctggccatg--------aatagctttttgtatgaggaaacaagatattctagactcatctttgtctgctctggcccttgaatcttat---ttt-ccccaagagtcctagcttcttttgttgggaaatggtactcagagaccaaaatctgggtgc------------ctgatgtcaggttgctattgattctgg-tccttccaaaaaacagagtaaacaaacatatgcaaa
i colAng1.NW_012115278v1    C 0 I 329
s calJac3.chr3               55223399 254 + 190850796 ccttggcctcccaaaatcctaggattacaggcgtgagcctccacaccaggccttg--------aacagctttttctttgaggaaataagatattccaggctcatctttgtctgccctggcccttgaatctacctatttt-ccccaagagccctggtttcttttagtggtaaatggtactcagagaccagtatctggatac------------ttgctgtcagattgccattgattctag-tcctttccaaaaacagagtaagcaaatacatCCAAA
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       304013 255 -   2086007 cttcggcctcctaaaatcctaggattacaggtgtaagcctccgcaccaggccttg--------aacagctttttctttgaggaaacaagatattccaggctcatctttgtctgccctggcccttgaatctacctattttcccccaagagcgctggtttgttttagtggtaaatggtactcagagaccagtatctggatac------------ttgctgtcagattgccattgattctag-tcctttccaaaaacagagtaagcaaatatattcaaa
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       369342 254 +   3831555 cctcgacctcccataatcctaggattacaggcgtgagcctccacATGAGgccttg--------aacagctttttctttgaggaaacaagatattccaggcttatctttgtctgccctggcccttgaatctacctatttt-gcctaagagccctggtttcttttagtggtaaatggtactcagagaccagtatctggatac------------ttgctgtcagattgccattgattctag-tcctttccaaaaacagagtaagtaaatatattcaaa
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59933297 185 -  91889043 -----------------------------------------------------------------------------------Cacaaaatattccaggctcatctt-gtttaccctgacccttgaatcagcctt-ttc-ccccaagagcccaggttttgttcactgggaagtaagacttgaaaactggtatctgggtgctgagggtactcattgctttcaaagtgttattcattctagattctttccaaagac-----aagcagatatattcaaa
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I
e otoGar3.GL873689             355123 306 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=1841.000000
s hg38.chr15_KI270851v1_alt    159692 1 +    263054 -a
s panTro5.chr15              73732324 1 -  83230942 -a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74035894 1 -  99763055 -a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        84749 1 -    281578 -a
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70942673 1 + 121039945 -a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164247121 1 - 169600520 -a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165567942 1 - 171882078 -a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       416806 1 +   2379783 -a
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       382095 1 +   4116138 -a
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53814576 1 +  58131712 -a
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       430050 1 -   3636681 -a
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr3               55223653 1 + 190850796 -A
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       304268 1 -   2086007 -a
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       369596 1 +   3831555 -a
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59933482 1 -  91889043 t-
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I
e otoGar3.GL873689             355123 306 +   3845361 I
e colAng1.NW_012115278v1       411407 329 -   4457520 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=72519.000000
s hg38.chr15_KI270851v1_alt    159693 8 +    263054 ataaagtt
s panTro5.chr15              73732325 8 -  83230942 ataaagtt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74035895 8 -  99763055 ataaagtt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        84750 8 -    281578 ataaagtt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70942674 8 + 121039945 ataaagtt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164247122 8 - 169600520 ataaagtt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165567943 8 - 171882078 ataaagtt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       416807 8 +   2379783 ataaagtt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       382096 8 +   4116138 ataaagtt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53814577 8 +  58131712 ataaagtt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       430051 8 -   3636681 ataaagtt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       411736 8 -   4457520 ataaagtt
i colAng1.NW_012115278v1    I 329 C 0
s calJac3.chr3               55223654 8 + 190850796 GTAAAGTT
i calJac3.chr3              C 0 C 0
s cebCap1.NW_016107707v1       304269 8 -   2086007 gtaaagtt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       369597 8 +   3831555 gtaaagtt
i aotNan1.NW_018503298v1    C 0 I 637
s canFam3.chr3               59933483 7 -  91889043 ataaacT-
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I
e otoGar3.GL873689             355123 306 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=18221.000000
s hg38.chr15_KI270851v1_alt    159701 2 +    263054 ca
s panTro5.chr15              73732333 2 -  83230942 ca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74035903 2 -  99763055 ca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        84758 2 -    281578 ca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70942682 2 + 121039945 ca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164247130 2 - 169600520 ca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165567951 2 - 171882078 ca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       416815 2 +   2379783 ca
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       382104 2 +   4116138 ca
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53814585 2 +  58131712 ca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       430059 2 -   3636681 ca
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       411744 2 -   4457520 ca
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr3               55223662 2 + 190850796 TA
i calJac3.chr3              C 0 n 0
s cebCap1.NW_016107707v1       304277 2 -   2086007 ca
i cebCap1.NW_016107707v1    C 0 I 701
s canFam3.chr3               59933490 2 -  91889043 CA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I
e aotNan1.NW_018503298v1       369605 637 +   3831555 I
e otoGar3.GL873689             355123 306 +   3845361 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=426883.000000
s hg38.chr15_KI270851v1_alt    159703 79 +    263054 ----tagatttccaatttaagttgtttttcaaaatttctttgattttttttcctcttttcca-ctgaaaaccttAAtttttttt
s panTro5.chr15              73732335 79 -  83230942 ----tagatttccaatttaagttgtttttcaaaatttctttgattttttttcctcttttcca-ctgaaaaccttAAtttttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74035905 78 -  99763055 ----tagatttccaatttaagttgtttttcaaaatttctttgattttttttcctcttttcca-ctgaaaacc-taatttttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        84760 79 -    281578 ----tagatttccaatttaagttgtttttcaatatttctttgattttttttcctcttttcca-ctgaaaaccttaatttttttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70942684 78 + 121039945 ----tagatttccaatttaagttgtttttcaaaatttctttga-tttttttcctcttttcca-ctgaaaaccttaattATTATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164247132 78 - 169600520 ----tagatttccaatttaagttgtgtttcaaaatttctttga-tagttttcctcttttata-ctgaaaaccttaattattatt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165567953 78 - 171882078 ----tagatttccaatttaagttgtgtttcaaaatttctttga-tagttttcctcttttata-ctgaaaaccttaattattatt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       416817 78 +   2379783 ----tagatttccaatttaagttgtgtttcaaaatttctttga-tagttttcctcttttata-ctgaaaaccttaattattatt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       382106 78 +   4116138 ----tagatttccaatttaagttgtgtttcaaaatttctttga-tagttttcctcttttata-ctgaaaaccttaattattatt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53814587 78 +  58131712 ----tagatttccaatttaagttgtgtttcaaaatttctttga-tagttttcctcttttata-ctgaaaaccttaattattatt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       430061 78 -   3636681 ----tagatttccaatttaagttgtgtttcaaaatttctttga-tagttttcctcttttata-ctgaaaaccttaattattatt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       411746 78 -   4457520 ----tagatttccaatttaagttgtttttcaaaatttctttga-tatttttcctcttttata-ctgaaaacctttattattatt
i colAng1.NW_012115278v1    C 0 C 0
s canFam3.chr3               59933492 81 -  91889043 TATTAAGAATTCGAATTTACTTTATTCTTAAAAATGTCCTTGATTTTTAAATCTCTTTTACACCTAAAAACCTTTTTTTCT---
i canFam3.chr3              C 0 I 237
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I
e aotNan1.NW_018503298v1       369605 637 +   3831555 I
e otoGar3.GL873689             355123 306 +   3845361 I
e cebCap1.NW_016107707v1       304279 701 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55223664  0 + 190850796 I

a score=1383629.000000
s hg38.chr15_KI270851v1_alt    159782 270 +    263054 tttttttttttttttttttttttttttttgagatggagtctcgttctgtttacccaggctggagcacagtgacataatctcggctcactgaaacctctgcctcctgggttcatgctagtcttctgcttcagcctcccgagtgactgggattacaggcatgcaccagcacacccggctaatttttcatatttttagtagagatggggtttcaccatgttggccaggctggtcatgaactcctgatctcaagtgatttacctgccttggcct
s panTro5.chr15              73732414 257 -  83230942 tttttttttttttttt-------------gagatggagtctcgttctgtttacccacgctggagcgcagtgacataatctcggctcactgaaacctctgcctcctgggttcatgctagtcttctgcttcagcctcccgagtgactgggattacaggcatgcaccagcacacccggctaattttttgtatttttagtagagatggggtttcaccgtgttggccaggctggtcatgaactcctgacctcaagtgatttacctgccttggcct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74035983 245 -  99763055 tttt-------------------------gagatggagtctcgttctgtttacccaggctggagcgcagtgacataatctcggctcactgaaacctctgcctcctgggttcatgctagtcttctgcttcagcctcccgagtgactgggattacaggcatgcaccagcacacccggctaattttttgtatttttagtagagatggggtttcaccgtgttggccaggctggtcatgaactcctgacctcaagtgatttacctgccttggcct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        84839 262 -    281578 ttttttttttttttttttttt--------gagatggagtctcgttctgtttacccatgctggagcgcagtgacataatctcggctcactgaaacctctgcctcctgggttcatgctagtcttctgcttcagcctcccgagtgactgggattacaggcatgcaccagcacacctggctaattttttatatttttagtagagatggagtttcaccatgttggccaggctggtcatgaactcctgatctcaagtgatttacctgccttggcct
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70942762 255 + 121039945 ATTATTAttttttt---------------gagatggagtctcgctctgtttacccaggctggagtgcagtgacacaatctctgctcactgaaacctctgcctcctgggttcatgctattcttctgcttcagcctcccaagtgactgggattacaggcatgcaccagcacacctggctaattttttatatttttagtagaggtggggtttcaccatgttggccaggctggtcatgaactcctgacctcaagtgatttacctgccttggcct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164247210 252 - 169600520 attattattgtttt---------------gagatagagtctcgctctatttgcccaggctggagtgcattggcacaatctcggctcactgaaacctctgcttcctgggttcgtgcta---ttctgcttcagcctcccgagggactgggattacaggcatataccagcacacctggctaattttttctatttttagtagaggtggggtttcaccatgttggccaggctggtcatgaactcctgacctcaaatgatttacctaccttggtct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165568031 252 - 171882078 attattattgtttt---------------gagatagagtctcgctctatttgcccaggctggagtgcattggcacaatctcggctcactgaaacctctgcttcctgggttcgtgcta---ttctgcttcagcctcccgagggactgggattacaggcatataccagcacacctggctaattttttctatttttagtagaggtggggtttcaccatgttggccaggctggtcatgaactcctgacctcaaatgatttacctaccttggtct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       416895 252 +   2379783 attattattgtttt---------------gagatagagtctcgctctatttgcccaggctggagtgcattggcaccatctcggctcactgaaacctctgcttcctgggttcgtgcta---ttctgcttcagcctcccgagggactgggattacaggcatataccagcacacctggctaattttttctatttttagtagaggtggggtttcaccatgttggccaggctggtcatgaactcctgacctcaaatgatttacctaccttggtct
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       382184 252 +   4116138 attattattgtttt---------------gagatagagtctcgctctatttgtccaggctggagtgcattggcacaatctcggctcactgaaacctctgcttcctgggttcgtgcta---ttctgcttcagcctcccgagggactgggattacaggcatataccagcacacctggctaattttttctgtttttagtagaggtggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatttacctaccttggtct
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53814665 252 +  58131712 attattattgtttt---------------gagatagagtctcgctctatttgcccaggctggagtgcattggcacaatctcggctcactgaaacctctgcctcctgggttcgtgcta---ttctgcttcagcctcccgagggactgggattacaggcatataccagcacacctggccaattttttctatttttagtagaggtggggtttcaccatgttggtcaggctggtcatgaactcctgacctcaagtgatttacctaccttggtct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       430139 252 -   3636681 attattattgtttt---------------gagatagagtctcgctctgtttgcccaggctggagtgcattggcacaatctcggctcactgaaacctctgcttcctgggttcgtgcta---ttctgcttcagcctcccgagggactgggattacaggcatataccagcacacctggctaattttttctattcttagtagaggtggggtttcaccatgttggccaggctggtcatgaactcctgacctcaagtgatttacctaccttggtct
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       411824 252 -   4457520 attattattgtttt---------------gagatagagtctcgctctgtttgcccaggctggagtgcattggcacaatctcgtctcactgaaacctctgcctcctgggttcgtgcta---gtctgcttcagcctcccgagggactgggattacaggcatgcaccagcacacctggctaagtttttatatttttagtagaggtggggtttcaccatgttggccaggctggtcatgaactcctgacctcaagtgatttacctaccttggcct
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I
e canFam3.chr3               59933573 237 -  91889043 I
e aotNan1.NW_018503298v1       369605 637 +   3831555 I
e otoGar3.GL873689             355123 306 +   3845361 I
e cebCap1.NW_016107707v1       304279 701 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55223664   0 + 190850796 I

a score=1247823.000000
s hg38.chr15_KI270851v1_alt    160052 228 +    263054 gccaaatgctgggattacgggtgtgagccaccatggccggccTAAAACCTTAATTTCTGAGAACATTTAATACTTTATCATAAACATGTTTTATTGTATTTACACTGCTTTATTGTGCAACATGAAGTAGTTCTAAAATTGTGAGAGTGTTATCAATACCGATAAAt----------atttta-tttttcat-tatag--tatattctattaatgatatGTAGTTCAAAAGTCCCTTGACAT
s panTro5.chr15              73732671 228 -  83230942 gccaaatgctgggattacgggtgtgagccaccgtggccggccTAAAACCTTAATTTCTAAGAACATTTAATACTTTATCATAAACATGTTTTATTGTATTTACACTGCTTTATTGTGCAACATGAAGTAGTTCTAAAATTGTGACAGTGTTATCAATACCGATAAAT----------ATTTTA-TTTTTCAT-TATAG--TATATTCTATTAATGATATGTAGTTCAAAAGTCCCTTGACAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74036228 230 -  99763055 gccaaatgctgggattacggatgtgagccaccgtggccggcctaaaaccttaatttctaagaacatttaatactttatcataaacatgttttattgtatttacactgctttattgtgcaacatgaagtagttctaaaattgtgacagtgttatcaataccgataaat----------atttta-tttttcat-tatagtatatattctattaatgatatgtagttcaaaagtcccttgacat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        85101 228 -    281578 gccaaatgctgggattacgggtgtgagccaccatggctggcctaaaaccttaatttctaagaacatttaatactttatcataaacatgttttatcgtatttacactgctttattgtgcaacatgaagtagttctaaaattgtgacagtgttatcaacaccaataaat----------atttta-ttttccat-tatag--tatattctattaatgatatgtagttcaaaagtcccttgacat
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70943017 229 + 121039945 cccaaatgccgggattataggtgtgagccaccatggccagccTAAAACCTTAATTTCTAATAACATTTAATACTTTATCATAAACACGTTTTATTGTATTTACATTGCTTTATTGTGCAACATGAAGTAGTTCTAAAATTGTGACAATATTACCAATACCAATAAAt----------ataagattttttcat-tatag--tatattctattaatgatatataGTTCAAAAGTCCCTTGACAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164247462 233 - 169600520 cccaaatgctgggattataggtgttagccaccatgactggcctaaagtcttaatttctaataacatttaatactttatcataaacatgttttattgtatttacgttgctttattgtgcaacatgaagtagttctaaaattgtgataatattatcaataccaataaata-----taagatttta-tttttcat-tatag--tatattctattaattatgtatagttcaaaagtcccttgacat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165568283 233 - 171882078 cccaaatgctgggattataggtgttagccaccatgactggcctaaagtcttaatttctaataacatttaatactttatcataaacatgttttattgtatttacgttgctttattgtgcaacatgaagtagttctaaaattgtgataatattatcaataccaataaata-----taagatttta-tttttcat-tatag--tatattctattaattatgtatagttcaaaagtcccttgacat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       417147 233 +   2379783 cccaaatgctgggattataggtgttagccaccatgactggcctaaagtcttaatttctaataacatttaatactttatcataaacatgttttattgtatttacattgctttattgtgcaacatgaagtagttctaaaattgtgacaatattatcaataccaataaata-----taagatttta-tttttcat-tatag--tatattctattaattatgtatagttcaaaagtcccttgacat
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       382436 233 +   4116138 cccaaatgctgggattacaggtgttagccaccatgactggcctaaagtcttaatttctaataacatttaatactttatcataaacatgttttattgtatttacattgctttattgtgcaacatgaagtagttctaaaattgtgacaatattatcaataccaataaata-----taagatttta-tttttcat-tatag--tatattctattaattatgtatagttcaaaagtcccttgacat
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53814917 227 +  58131712 cccaaatgctgggattacaggtgttagccaccatgactggcctaaagtcttaatttctaataacatttaatactttatcataaacatgttttattgtatttacattgctttattgtgcaacatgaagtagttctaaaattgtgacaatattat------caataaata-----taagatttta-tttttcat-tatag--tatattctattaattatgtatagttcaaaagtcccttgacat
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       430391 233 -   3636681 cccaaatgctgggattacaggtgttagccaccatgactggcctaaagtcttaatttctaataacatttaatactttatcataaacatgttttattgtatttacattgctttattgtgcaacatgaagtagttctaaaattgtgacaatattatcaataccaataaata-----taagatttta-tttttcat-tatag--tatattctattaattatgtatagttcaaaagtcccttgacat
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       412076 230 -   4457520 cccaaatgctgggattacaggtgttagccaccgtgactggcctaaagtcttaatttctaataacatttaatactttatcatgaacatgttttattgtatttacattgctttattgtgcaacgtga---agttctaaaattgtgacaatattatcaataccaataaata-----taagatttta-tttttcat-tatag--tatattctattaattatgtatagttcaaaagtcccttgacat
i colAng1.NW_012115278v1    C 0 C 0
s canFam3.chr3               59933810 167 -  91889043 gccataggcaggcgctaaaccgctaagccacccagg-------GATACCCCtagttttaaga--------------------------ttttaatgt------------------------------taatactacaat--------tatcaataagaccaatgagtaaagtttaagattttt-ttttccccataaag--tatatttgactaaagatgtgtaatt-gaaaggctcctgaaat
i canFam3.chr3              I 237 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I
e aotNan1.NW_018503298v1       369605 637 +   3831555 I
e otoGar3.GL873689             355123 306 +   3845361 I
e cebCap1.NW_016107707v1       304279 701 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55223664   0 + 190850796 I

a score=1714370.000000
s hg38.chr15_KI270851v1_alt    160280 267 +    263054 ACTTTTCTTTGT-atatgcatgggttaatttgcttgttgccagttgtaggttttgc-ttttttatgatttaattttaatttttgaggatgaaagt-ca--tgtatgtttcagaagtaaagacatctaaagtatactcacaatgttgttgctttttctggt-c-ctgctgcctttgtccatgtcccc-tccccatttccccgtaggtagtcattggtacttgctttcggtttatcttttcaga---gcatatgcacgtgtgtgtgtttgtgtgtgtgtc
s panTro5.chr15              73732899 267 -  83230942 ACTTTTCTTTGT-ATGTGCAtgggttaatttgcttgttgccagttgtaggttttgc-ttttttatgatttaattttaatttttgaggatgaaagt-ca--tgtatgtttcagaagtaaagacatataaagtatactcacaatattgttgctttttctggt-c-ctgctgcctttgtccatgtcccc-tccccatttccccgtaggtagtcattggtacttgcttttggtttatcttttcaga---gcacatgcacgtgtgtgtgtttgtgtgtgtgtc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74036458 267 -  99763055 acttttctttgt-atgtgcatgggttaatttgcttgttgccagttgtaggttttgc-ttttttatgatttaattttaatttttgaggatgaaagt-ca--tgtatgtttcagaagtaaagacatataaagtatactcacaatattgttgctttttctggt-c-ctgctgcctttgtccatgtcccc-tccctatttccccgtaggtagtcattggtacttgcttttggtttatcttttcaga---gcacatgcacgtgtgtgtgtttgtgtgtgtgtc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        85329 267 -    281578 acttttctttgt-atgtgcatgggttaatttgcttgttgccagttgtaggttttgc-ttttttatgatttaattttaatttttgaggatgaaagt-ca--tgtatgtttcagaagtaaagacatataaagtatactcacaatgttgttgctttttctggt-c-ctgctgcctttgtccatgtcccc-tccccatttccccgtaggtagtcattggtacttgcttttggtttatcttttcaga---gcacgtgcgcgtgtgtgtgtttgtgtgtgtgtc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70943246 263 + 121039945 ACTTTTCTTTGT-atatgcatgggttaatttgcttgttgccagttgtaggttttgc-ttttttatgatttaattgtaatttttgaggatgaaagt-ca--tgtatgtttcagaagtaaagacatataaagtatactcacaatgttgt---tttttct-gt-c-ctgctgcctttgtccatgtcccc-tccccatttccccgtaggtagtcattggtacttgcttttggtttatcttttcaga---gcacatgcacgtgtccgcgtttgtgtgtgtgtc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164247695 263 - 169600520 acttttctttgt-atatgcgtgggttaatttgcttgttgccagttgtaggttttgc-ttttttataatttaattttaatttttgaggatgaaagt-ca--tgtatatttcagaagtaaagaca--caaagtatacttaaaatgttgttgctttttctggt-c-ctgctgcctttgcccatatcccc-tccccatttccttacaggtagtcattgatacttgcttttggtttatctttttaga---gcacatgcatgtgtgtttgtt--tgtgtgtgtc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165568516 263 - 171882078 acttttctttgt-atatgcgtgggttaatttgcttgttgccagttgtaggttttgc-ttttttataatttaattttaatttttgaggatgaaagt-ca--tgtatatttcagaagtaaagaca--caaagtatacttaaaatgttgttgctttttctggt-c-ctgctgcctttgcccatatcccc-tccccatttccttacaggtagtcattgatacttgcttttggtttatctttttaga---gcacatgcatgtgtgtttgtt--tgtgtgtgtc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       417380 263 +   2379783 acttttctttgt-atatgcgtgggttaatttgcttgttgccagttgtaggttttgc-ttttttataatttaattttaatttttgaggatgaaagt-ca--tgtatatttcagaagtaaagaca--caaagtatacttaaaatgttgttgctttttctggt-c-ctgctgcctttgcccatatcccc-tccccatttccttacaggtagtcattgatacttgcttttggtttatctttttaga---gcacatgcatgtgtgtttgtt--tgtgtgtgtc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       382669 263 +   4116138 acttttctttgt-atatgcgtgggttaatttgcttgttgccagttgtaggttttgc-ttttttataatttaattttcatttttgaggatgaaagt-ca--tgtatatttcagaagtaaagaca--caaagtatacttaaaatgttgttgctttttctggt-c-ctgctgcctttgcccatatcccc-tccccatttccttacaggtagtcattgatacttgcttttggtttatctttttaga---gcacatgcatgtgtgtttgtt--tgtgtgtgtc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53815144 263 +  58131712 acttttctttgt-atatgcgtgggttaatttgcttgttgccagttgtaggttttgc-ttttttataatttaattttaatttttgaggatgaaagt-ca--tgtatatttcagaagtaaagaca--caaagtatacttaaaatgttgttgctttttctggt-c-ctgctgcctttgcccatatcccc-tccccatttccccacaggtagtcattgatacttgcttttggtttatctttataga---gcacatgcatgtgtgtgtgtt--tgtgtgtgtc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       430624 260 -   3636681 acttttctttgt-atatgcgtgggttaatttgcttgttgccagttgtaggttttgc-ttttttataatttaattttaatttttgaggatgaaagt-ca--tgtatatttcagaagtaaagaca--caaagtatacttaaaa---tgttgctttttctggt-c-ctgctgcctttgcccatatcccc-tccccatttccttacaggtagtcattgatacttgcttttggtttatctttttaga---gcacatgcatgtgtgtttgtt--tgtgtgtgtc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       412306 263 -   4457520 acttttctttgt-atgtgcgtgggttaatttgcttgttgccagttgtaggttttgc-ttttttatgatttaattttaatttttgaggatgaaagt-ca--tgtatatttcagaagtaaagaca--caaagtatacttaaaatattgttgctttttctggt-c-ctgctgcctttgcccctatcccc-tccccatttccccacaggtagtcattgatacttgcttttggtttatcttttcaga---gcacatgcatgtgtgtttgtt--tgtgtgtgtc
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             355429 251 +   3845361 ACATTTCTTTTT-ATATACAGGGGTTAATTTGCATGTTGCCAGTTGTAGGTTTTGCTTTTTTTATGAATTA------ATTTTTGAGGATGTAAGCATT--TGTATGTTTTATAAGTAAAGACCTACGAAGTCATCTCTCAG---TTTTGCCTTCAGTGGTCC-CTGCTGCCTTCA-CCACAACCCC-CCTCAGGCTCCCCACAGGTCAGCTGTGTTATTTGCTCGTGGCTTAtcttttcagatatgtgcacacacgtgt---------tgtatgt---
i otoGar3.GL873689          I 306 C 0
s canFam3.chr3               59933977 242 -  91889043 acttttctttgtgataaacataagttaatttgcttgttaccagttgtagattttgc-ttttttatgatttaattttaatttttgaagatgaaaat-catttatatgtttcagaagtaaaaa----tatagtttactcaaaa---tcttgctttcataaat-ctctactgctgt-----gtagccctgtcacagttgtcttatcattagtaatcattatttgtttctggtttatctttctaga---gcaca------------------tatgtgtgtc
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I
e aotNan1.NW_018503298v1       369605 637 +   3831555 I
e cebCap1.NW_016107707v1       304279 701 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I
e calJac3.chr3               55223664   0 + 190850796 I

a score=7098.000000
s hg38.chr15_KI270851v1_alt    160547 1 +    263054 t
s panTro5.chr15              73733166 1 -  83230942 t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74036725 1 -  99763055 t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        85596 1 -    281578 t
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70943509 1 + 121039945 t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164247958 1 - 169600520 t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165568779 1 - 171882078 t
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       417643 1 +   2379783 t
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       382932 1 +   4116138 t
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53815407 1 +  58131712 t
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115278v1       412569 1 -   4457520 t
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154447372 1 - 158406734 t
i calJac3.chr6              n 0 C 0
s canFam3.chr3               59934219 1 -  91889043 t
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I
e aotNan1.NW_018503298v1       369605 637 +   3831555 I
e otoGar3.GL873689             355680 0 +   3845361 C
e cebCap1.NW_016107707v1       304279 701 -   2086007 I
e manLeu1.NW_012102332v1       430884 0 -   3636681 C
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=39404.000000
s hg38.chr15_KI270851v1_alt    160548 8 +    263054 tttttttc
s panTro5.chr15              73733167 8 -  83230942 tttttttc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74036726 8 -  99763055 tttttttc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        85597 8 -    281578 tttttttc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70943510 8 + 121039945 tttttttc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164247959 8 - 169600520 ttcttttc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165568780 8 - 171882078 ttcttttc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       417644 8 +   2379783 ttcttttc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       382933 8 +   4116138 gtcttttc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53815408 8 +  58131712 ttcttttc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       430884 4 -   3636681 ----tttc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       412570 8 -   4457520 tttttttc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154447373 8 - 158406734 ttatttat
i calJac3.chr6              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I
e canFam3.chr3               59934220 0 -  91889043 C
e aotNan1.NW_018503298v1       369605 637 +   3831555 I
e otoGar3.GL873689             355680 0 +   3845361 C
e cebCap1.NW_016107707v1       304279 701 -   2086007 I
e saiBol1.JH378292             274062 8736 -   2682657 I

a score=264525.000000
s hg38.chr15_KI270851v1_alt    160556 57 +    263054 tttt-------------tttttttttttaacaccgagtctcgctcttatcaactcaggct-gagtgctgtg--
s panTro5.chr15              73733175 67 -  83230942 ttttctttctttt--tttttttttttttaacaccgagtctcgctcttgtca-ctcaggct-gagtgcagtg--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74036734 63 -  99763055 tttt----ctttt--tttttttttttttaacaccgagtctcgctcttgtca-ctcaggct-gagtgcagtg--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        85605 64 -    281578 tttt----ctttt-ctttttatttttttaacaccgagtctcgctcttgtca-ctcaggct-aagtgcagtg--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70943518 65 + 121039945 tttc----tttttttttttttttttttttgagacgagtctcgctgttgtca-ctcaggct-gagtgcagtg--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164247967 58 - 169600520 tttt----c-------ttttttttttttgagaccgagtcttgttcttgtca-ctgaggct-gagtgcagtg--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165568788 58 - 171882078 tttt----c-------ttttttttttttgagaccgagtcttgttcttgtca-ctgaggct-gagtgcagtg--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       417652 56 +   2379783 tttt----c---------ttttctttttgagaccgagtcttgttcttgtca-ctgaggct-gagtgcagtg--
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       382941 56 +   4116138 tttt----c---------ttttttttttgagaccgagtcttgttcttgtca-ctgaggct-gagtgcagtg--
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53815416 56 +  58131712 tttt----c---------ttttttttttgagaccgagtcttgttcttgtca-ctgaggct-gagtgcagtg--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       430888 56 -   3636681 tttt----c---------ttttttttttgagaccgagtcttgttcttgtca-ctgaggct-gagtgcagtg--
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       412578 59 -   4457520 tttt----c------tttttttttttttgagaccaagtcttgttcttgtca-ctgaggct-gagtgcagtg--
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154447381 56 - 158406734 -------------ttatttatttattttgagatggagtctcgctc-cgttg-cccaggctggactgcagtg--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             282798 56 -   2682657 -------------tttattattttttttgagatggagtctcgctc-tgttg-cccaggctggactgcagtg--
i saiBol1.JH378292          I 8736 C 0
s otoGar3.GL873689             355680 54 +   3845361 -------------tctttttcttgttttcacacgtaagttagcatatatat----agtct-ga-tgcactgtg
i otoGar3.GL873689          C 0 I 85
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I
e canFam3.chr3               59934220  0 -  91889043 C
e aotNan1.NW_018503298v1       369605 637 +   3831555 I
e cebCap1.NW_016107707v1       304279 701 -   2086007 I

a score=448626.000000
s hg38.chr15_KI270851v1_alt    160613 63 +    263054 gtgcgatcttggctcactgcaacctctgcctcctgggttcaagcaattctcttgcctcggctt
s panTro5.chr15              73733242 63 -  83230942 gtgcgatctcggctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagctt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74036797 63 -  99763055 gtgcgatctcggctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagctt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        85669 63 -    281578 gtgcgatctcggctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagctt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70943583 63 + 121039945 gtgcgatcttggctcactgcaacctctgcctcctggtttcaagtgattctcctgcctcagctt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164248025 63 - 169600520 gcatgatctcagcttactgcaacctccacctcctgggttcaagcgattctcctgcctcagcct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165568846 63 - 171882078 gcatgatctcagcttactgcaacctccacctcctgggttcaagcgattctcctgcctcagcct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       417708 63 +   2379783 gcatgatctcagcttactgcaacctccacctcctgggttcaagcgattctcctgcctcagcct
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       382997 63 +   4116138 gcatgatctcagcgtactgcaacctccacctcctgggttcaagggattctcctgcctcagcct
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53815472 63 +  58131712 gcgcaatctcagcttattgcaacctccacctcctgggttcaagcgattctcctgcctcagcct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       430944 63 -   3636681 gcatgatctcagcgtactgcaacctccacctcctgggttcaagcgattctcctgcctcagcct
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       412637 63 -   4457520 gcgcgatctcagcttactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcct
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154447437 60 - 158406734 gcgcagtctcagctcactgaaacctccgcctcctgggttcaagctatt---ctgccttagcct
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             282854 63 -   2682657 gcacaatctcagctcactgaaacctcctcctcctgggttcaagctattctcctgccttagcct
i saiBol1.JH378292          C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I
e canFam3.chr3               59934220  0 -  91889043 C
e aotNan1.NW_018503298v1       369605 637 +   3831555 I
e otoGar3.GL873689             355734 85 +   3845361 I
e cebCap1.NW_016107707v1       304279 701 -   2086007 I

a score=852088.000000
s hg38.chr15_KI270851v1_alt    160676 128 +    263054 cgtgagtagctgggattataggcgcccgccaccacgcctggctaa--ttttttgtatt--------------------tttagttgggacggcgtttcaccgtgtt---ggccaggctggtctcaaattcctgatcccccgtgatgtgccccg
s panTro5.chr15              73733305 128 -  83230942 cctgagtagctgggattacaggcgcccgccaccacgcctggctaa--ttttttgtatt--------------------tttagttgggatggggtttcaccgtgtt---ggccaggctggtctcaaattcctgatcccccgtgatgtgccccg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74036860 128 -  99763055 cctgagtagctgggattacaggcgcccgccaccacgcctggctaa--ttttttgtatt--------------------tttagttgggacggggtttcaccgtgtt---ggccaggctggtctcaaattcctgatcccccgtgatgtgcccca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        85732 128 -    281578 cctgagtagctgggattacaggcgcccgccaccacgcctggctaa--ttttttgtatt--------------------tttagttgggacggggtttcaccgtgtt---ggccaggctggtctcaaattcctgatcccccgtgatgtgccccg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70943646 130 + 121039945 cctgagtagctgggattacaggcgcctgccaccaagcctggctaattttttttgtatt--------------------tttagttgggatggggtttcaccatgtt---ggccaggctggtctcaaattcctgatcccaggtgatctgcccgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164248088 129 - 169600520 cctgagtagctgggattacaggcgcatgccaccatacctggctaa-ttcttttgtatt--------------------tttagtagagatggggtttcaccgtgtt---ggccaggctggtctcaaattcctcatctcaggtgatctgcccct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165568909 129 - 171882078 cctgagtagctgggattacaggcgcatgccaccatacctggctaa-ttcttttgtatt--------------------tttagtagagatggggtttcaccgtgtt---ggccaggctggtctcaaattcctcatctcaggtgatctgcccct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       417771 129 +   2379783 cctgagtagctgggattacaggcgcatgccaccatacctggctaa-ttcttttgtatt--------------------tttagtagagatggggtttcaccgtgtt---ggccagtctggtctcaaattcctcatctcaggtgatctgcccct
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383060 129 +   4116138 cctgagtagctgggattacaggcgcatgccaccatacctggctaa-ttcttttgtatt--------------------tttagtagagatggggtttcaccgtgtt---ggccaggctggtctcaaattcctcatctcaggtgatctgcccct
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53815535 129 +  58131712 cctgagtagctgggattacaggcgcatgccaccatacctggctaa-ttcttttgtatt--------------------tttagtagagatggagtttcaccgtgtt---ggccaggctggtctcaaattcctcatctcaggtgatctgccccc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431007 129 -   3636681 cctgagtagctgggattacaggcgcatgccaccatacctggctaa-ttcttttgtatt--------------------tttagtagagatggggtttcaccgtgtt---ggccaggctggtctcaaattcctcatctcaggtgatctgcccct
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       412700 129 -   4457520 cctgagtagctgggattacaggcgcatgccaccatacctggctta-tttttttgtatt--------------------tttagtagagatggggtttcaccgtgtt---ggccaggctggtctcaaattcctcatctcaggtgatctgccccc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154447497 146 - 158406734 cccgagtatctaggattacaggcatgttccaccacacctggctaa--ttctttgtatttttgtttgtttatttatttgtttattagagacagggtttcaccatgtt---ggccaggatggtcttgatctcctgacttc--gtgatccgcctgc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             282917 146 -   2682657 cctgagtaactgggattagaggcatgtgccgccacacctggctaa--ttctttgtatttttgtttgtttatttatttatttattagagtcggggtttcaccatgtt---ggccaggatggtcttgatctcctgacctc--gtgatccgcctgc
i saiBol1.JH378292          C 0 C 0
s otoGar3.GL873689             355819 144 +   3845361 TGAGGGTAAATGAGATT-------TTCTTCCCCATATATCTttta--tttattttatttttatttatttatttatttatttTTTGAGACAAGAGTTTAACTATgtcacagctcacagcaacctcaaactgttgggcttaagtgattctcttgc
i otoGar3.GL873689          I 85 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I
e canFam3.chr3               59934220   0 -  91889043 C
e aotNan1.NW_018503298v1       369605 637 +   3831555 I
e cebCap1.NW_016107707v1       304279 701 -   2086007 I

a score=423720.000000
s hg38.chr15_KI270851v1_alt    160804 59 +    263054 ctcggcctccca-aagtgct-gggatgacaagcatgagccacctcgcctgaccacg----tgtca
s panTro5.chr15              73733433 59 -  83230942 ctcggcctccca-aagtgct-gggattacaagcatgagccacctcgcccggccacg----tgtca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74036988 59 -  99763055 ctcggcctccca-aagtgct-gggattacaagcatgagccacctcgcccggccacg----tgtca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        85860 59 -    281578 cttggcctccca-aagtgct-gggattacaagcatgagccacctcgccccgccacg----tgtca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70943776 59 + 121039945 ctcggcctccca-aagtgct-gggattacaagcatgagccacctcgcccgaccacg----tgtcc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164248217 60 - 169600520 cttggcctcccgtaagtgct-gggattacaggcatgagcgacttcgccggaccacg----tgtct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569038 60 - 171882078 cttggcctcccgtaagtgct-gggattacaggcatgagcgacttcgccggaccacg----tgtct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       417900 60 +   2379783 cttggcctcccgtaagtgct-gggattacaggcatgagcgacttcgccggaccacg----tgtct
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383189 60 +   4116138 cttggcctcccgtaagtgct-gggattacaggcatgagcgacttcgccggaccacg----tgtct
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53815664 60 +  58131712 cttggcctcccgtaagtgct-gggatcacaggcatgagcgacttcgctggaccacg----tgtct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431136 60 -   3636681 cttggcctcctgtaagtgct-gggattacaggcatgagcgacttcgccggaccacg----tgtct
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       412829 60 -   4457520 cttggcctcccataagtgct-gggattacaggcatgagtgacctcgccggaccacg----tgtct
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154447643 59 - 158406734 ttcggcctccca-aagtgca-cagattccagacatgagccactgtgcctggccACG----TTTTT
i calJac3.chr6              C 0 I 1
s saiBol1.JH378292             283063 63 -   2682657 ctcggcttccca-gactgtt-tggactacagacatgagccactgtgcccggccACGTTTTTTTTT
i saiBol1.JH378292          C 0 I 1
s aotNan1.NW_018503298v1       370242 59 +   3831555 ctcggcctccca-aagtgct-cggattacagacatgagccactgtgcctggccACG----TTTTT
i aotNan1.NW_018503298v1    I 637 I 3
s otoGar3.GL873689             355963 52 +   3845361 ctctgcctccct-agtagctggggattttaggcgc-cgccacaacacccggcta-----------
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I
e canFam3.chr3               59934220  0 -  91889043 C
e cebCap1.NW_016107707v1       304279 701 -   2086007 I

a score=124642.000000
s hg38.chr15_KI270851v1_alt    160863 10 +    263054 tttttcttgt
s panTro5.chr15              73733492 10 -  83230942 tttttcttgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037047 10 -  99763055 tttttcttgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        85919 10 -    281578 tttttcttgt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70943835  9 + 121039945 tttttctt-t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164248277 10 - 169600520 tttttcttgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569098 10 - 171882078 tttttcttgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       417960 10 +   2379783 tttttcttgt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383249 10 +   4116138 tttttcttgt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53815724 10 +  58131712 tttttcttgt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431196 10 -   3636681 tttttcttgt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       412889 10 -   4457520 tttttcttgt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154447703 10 - 158406734 TTTTTCTTGT
i calJac3.chr6              I 1 C 0
s saiBol1.JH378292             283127 10 -   2682657 TTTTTTTTGT
i saiBol1.JH378292          I 1 C 0
s cebCap1.NW_016107707v1       304980 10 -   2086007 TTTTTCTTGT
i cebCap1.NW_016107707v1    I 701 C 0
s aotNan1.NW_018503298v1       370304 10 +   3831555 TTTTTCTTGT
i aotNan1.NW_018503298v1    I 3 C 0
s otoGar3.GL873689             356015  9 +   3845361 -tttttttgt
i otoGar3.GL873689          C 0 I 71
s canFam3.chr3               59934220 10 -  91889043 tttttctcgt
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I

a score=1537254.000000
s hg38.chr15_KI270851v1_alt    160873 167 +    263054 atgttacataagaggtagaatagtatttatactattatgca------ccttttcattta----tatttctt-ggaTGACTTTCATGAAATGTAAAATGATTAAGTCACTAATTCAGTAAATCATTGATTTTATTACTGAATGATCGAATACATAAGGGGGATTGAGATTTTTT-----CCCAT
s panTro5.chr15              73733502 168 -  83230942 atgttacataagaggtagcatagtatttatactattatgca------ccttttcattta----tatttctt-ggaTGACTTTCATGAAATGTAAAATGATTAAATCACTAATTCAGTAAATCATTGATTTTATTACCGAATGATCGAATACATAAGGGGGATTGAGATTTTTT----TCCCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037057 168 -  99763055 atgttacataagaggtagcatagtatttatactattatgca------ccttttcattta----tatttctt-ggaTGACTTTCATGAAATGTAAAATGATTAAATCACTAATTCAGTAAATCATTGATTTTATTACCGAATGATGGAATACATAAGGGGGATTGAGATTTTTT----TCCCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        85929 168 -    281578 atgttacataagaggtagaatagtatttatactattatgca------ccttttcattta----tatttctt-ggaTGACTTTCATGAAATGTAAAATGATTAAATCACTAATTCAGTAAATCATTGATTTTATTACCAAATGATCGAATACATAAGGGGGATTGAGATTTTTT----TCCCAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70943844 168 + 121039945 atattacttaagaggtagcatagtatttacactattatgca------ccttttcactta----tatttctt-ggaTGACTTTCATGAAATGTAAAATGATTAAGTCACTAATTTAGTAAATCATTGATTTTATTACTAAGTGATTGAATACCTAAGGGGGATTGAGGTTTTTT----TCCCGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164248287 168 - 169600520 atgttacacaagaggtagcctagtattgacactattatgca------ccttttcacttt----tatttctt-ggaTGACTTTCATGAAATGTAAAATGATTAAGTCACTAATTTAGTAAATCATTGATTTTATTACTGAGTGATTGAATACATAAGAGAGATTGAGATTTTTT----TCCCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569108 168 - 171882078 atgttacacaagaggtagcctagtattgacactattatgca------ccttttcacttT----TATTTCTT-GGATGACTTTCATGAAATGTAAAATGATTAAGTCACTAATTTAGTAAATCATTGATTTTATTACTGAGTGATTGAATACATAAGAGAGATTGAGATTTTTT----TCCCAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       417970 168 +   2379783 atgttacacaagaggtagcctagtattgacactattatgca------ccttttcacttt----tatttctt-ggaTGACTTTCATGAAATGTAAAATGATTAAGTCACTAATTTAGTAAATCATTGATTTTATTACTGAGTGATTGAATACATAAGAGAGATTGAGATTTTTT----TCCCAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383259 168 +   4116138 atgttacacaagaggtagcctagtattgacactattatgca------ccttttcacttt----tatttctt-ggaTGACTTTCATGAAATGTAAAATGATTAAGTCACTAATTTAGTAAATCATTGATTTTATTACTGAGTGATTGAATACATAAGAGAGATTGAGATTTTTT----TCCCTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53815734 168 +  58131712 atgttacacaagaggtagcctagtattgacactattatgca------ccttttcactta----tatttctt-ggaTGACTTTCATGAAATGTAAAATGATTAAGTCACTAATTTAGTAAATCATTGATTTTATTACTGAGTGATTGAATACATAAGGGAGATTGAGATTTTTT----TCCCAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431206 168 -   3636681 atgttacacaagaggtagcctagtattgacactattatgca------ccttttcacttt----tatttctt-ggaTGACTTTCATGAAATGTAAAATGATTAAGTCACTAATTTAGTAAATCATTGATTTTATTACTGAGTGATTGAATACATAAGAGAGATTGAGATTTTTT----TCCCAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       412899 161 -   4457520 atgttacacaaggggtagcctagtattgacactattgtgca------ccttttcactta----tatttctt-ggaTGACTTTCATGAAATGT-------TTAAGTCACTAATTTAGTAAATCATTGATTTTATTACTGAGTGATTGAATACATAAGGGGGATTGAGATTTTTT----TCCCAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154447713 162 - 158406734 ATATTACACGAGAAGTAGCATAATATTTATACTATTAT---------TATTTTCATTTA----CATTTCCT-GGGTGATTTTCATTAAATGTAAAATGGTTAAGTCACTAATTTACTAAATCATTGATTTTATTAATGAATGATTGAATACATAAGGGGGATTGAG---TTTT----TTTCAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             283137 162 -   2682657 ATGTTACATGAGAGCTAGCATAGTG-TTACACCATTAT---------TATTTTCATTGA----CCTTTCCT-GGATGATTTTCGTTAAATGTAAAATGGTTAAGTCACTAATTTACTAAATCATTGATTTTATTAATGAATGATTGAATACATAAGGGGGATTGAGA--TTTT----TTTAAC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       304990 162 -   2086007 ATGTCACACAAGAGGTAGGATAGTATGTACACTATTAT---------TACTCTCATTTA----CATTTCCT-GGATGATTTTCATTAAATGTAAAATGGTTAAGTCACTAATTTACTAAATCATTGATTTTATTAATGAATGATTCAATACATAAGGTGGATTGAG---TTTT----TTTCAT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       370314 162 +   3831555 ATGTTACACGAGAGGTAGCATAGTATTTACACTattat---------tattttcattta----catttcct-ggatgattttcattAAATGTAAAATGGTTAAGTCACTAATTTACTAAATCATTGATTTTATTAATGAATGATTGAATACATAAGGGGGATTGAG---TTTT----TTTCAT
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59934230 135 -  91889043 atcttatgtagaagttagcatcatttatatactattatgcgctgtgcctttttcatttaactgtattttttggGATGATTTTCATTAAATG------------------------------------------------ATGATTGAATATATGAAAAGAAATGAGATTTTTTAAAAAATCAT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I
e otoGar3.GL873689             356024  71 +   3845361 I

a score=397360.000000
s hg38.chr15_KI270851v1_alt    161040 34 +    263054 -ATCATTCTTTAAAAATTGCAGTGTGAG-------TGTGAGC
s panTro5.chr15              73733670 34 -  83230942 -ATCATTCTTTAAAAATTGCAATGTGAG-------TGTGAGC
i panTro5.chr15             C 0 I 11
s panPan2.chr15              74037225 34 -  99763055 -ATCATTCTTTAAAAATTGCAATGTGAG-------TGTGAGC
i panPan2.chr15             C 0 I 11
s gorGor5.CYUI01000141v1        86097 34 -    281578 -ATCATTCTTTAAAAATTGCAATGTGAG-------TGTGAGC
i gorGor5.CYUI01000141v1    C 0 I 11
s nomLeu3.chr6               70944012 34 + 121039945 -ATCATTCTTTAAAAACTGCAGTGTGAG-------CGTGAGC
i nomLeu3.chr6              C 0 I 9
s rheMac8.chr7              164248455 34 - 169600520 -ATCATTCTTTAAAAATTGCAATGTGAG-------TGTGAGC
i rheMac8.chr7              C 0 I 11
s macFas5.chr7              165569276 34 - 171882078 -ATCATTCTTTAAAAATTGCAATGTGAG-------TGTGAGC
i macFas5.chr7              C 0 I 11
s macNem1.NW_012011934v1       418138 34 +   2379783 -ATCATTCTTTAAAAATTGCAATGTGAG-------TGTGAGC
i macNem1.NW_012011934v1    C 0 I 11
s cerAty1.NW_012001462v1       383427 34 +   4116138 -ACCATTCTTTAAAAATTGCAGTGTGAG-------TGTGAGC
i cerAty1.NW_012001462v1    C 0 I 11
s chlSab2.chr26              53815902 34 +  58131712 -ATCATTCTTTAAAAATTGCAGTGTGAG-------TGTGAGC
i chlSab2.chr26             C 0 I 11
s manLeu1.NW_012102332v1       431374 34 -   3636681 -ACCATTCTGTAAAAATTGCAATGTGAG-------TGTGAGC
i manLeu1.NW_012102332v1    C 0 I 11
s colAng1.NW_012115278v1       413060 34 -   4457520 -ATCATTCTTTAAAAATTACAGTGTGAG-------TGTGAGC
i colAng1.NW_012115278v1    C 0 I 11
s calJac3.chr6              154447875 34 - 158406734 -ATCATTCTTGAAAAATTGCAGTGTGAG-------TGTGAGC
i calJac3.chr6              C 0 I 11
s saiBol1.JH378292             283299 34 -   2682657 -ATCGTTCTTGAAAAATTGCAGTGTGAG-------TGTGAGC
i saiBol1.JH378292          C 0 I 11
s cebCap1.NW_016107707v1       305152 34 -   2086007 -ACCATTCTTGAAAAATTGCAATGTGAG-------TATGAGC
i cebCap1.NW_016107707v1    C 0 I 11
s aotNan1.NW_018503298v1       370476 34 +   3831555 -ATCATTCTTGAAAAATTGCAATGTGAG-------TGTGAGC
i aotNan1.NW_018503298v1    C 0 I 11
s otoGar3.GL873689             356095 33 +   3845361 -ATGATTCTT-AAGAACTGAATGGTGAG-------TGTGAGC
i otoGar3.GL873689          I 71 I 11
s canFam3.chr3               59934365 42 -  91889043 AATCATTCTTTAAGAATTGCATTGTATGATCATTCTGTAAGT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I
e proCoq1.NW_012148396v1     13436500 1477 +  16154928 I

a score=44487.000000
s hg38.chr15_KI270851v1_alt    161074 3 +    263054 TTA
s panTro5.chr15              73733715 3 -  83230942 TTA
i panTro5.chr15             I 11 C 0
s panPan2.chr15              74037270 3 -  99763055 TTA
i panPan2.chr15             I 11 C 0
s gorGor5.CYUI01000141v1        86142 3 -    281578 TTA
i gorGor5.CYUI01000141v1    I 11 C 0
s nomLeu3.chr6               70944055 3 + 121039945 TTA
i nomLeu3.chr6              I 9 C 0
s rheMac8.chr7              164248500 3 - 169600520 TTA
i rheMac8.chr7              I 11 C 0
s macFas5.chr7              165569321 3 - 171882078 TTA
i macFas5.chr7              I 11 C 0
s macNem1.NW_012011934v1       418183 3 +   2379783 TTA
i macNem1.NW_012011934v1    I 11 C 0
s cerAty1.NW_012001462v1       383472 3 +   4116138 TTA
i cerAty1.NW_012001462v1    I 11 C 0
s chlSab2.chr26              53815947 3 +  58131712 TTA
i chlSab2.chr26             I 11 C 0
s manLeu1.NW_012102332v1       431419 3 -   3636681 TTA
i manLeu1.NW_012102332v1    I 11 C 0
s colAng1.NW_012115278v1       413105 3 -   4457520 TTA
i colAng1.NW_012115278v1    I 11 C 0
s calJac3.chr6              154447920 3 - 158406734 TTA
i calJac3.chr6              I 11 C 0
s saiBol1.JH378292             283344 3 -   2682657 TTA
i saiBol1.JH378292          I 11 C 0
s cebCap1.NW_016107707v1       305197 3 -   2086007 TTA
i cebCap1.NW_016107707v1    I 11 C 0
s aotNan1.NW_018503298v1       370521 3 +   3831555 TTA
i aotNan1.NW_018503298v1    I 11 C 0
s proCoq1.NW_012148396v1     13437977 3 +  16154928 TTA
i proCoq1.NW_012148396v1    I 1477 C 0
s otoGar3.GL873689             356139 3 +   3845361 TTG
i otoGar3.GL873689          I 11 C 0
s canFam3.chr3               59934407 3 -  91889043 TTA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116206668 3555 + 116334831 I

a score=3178718.000000
s hg38.chr15_KI270851v1_alt    161077 198 +    263054 TCTCGTTTATCATTGCCAGCTTGCATTCACAAGAGATGGGCTCTGTGGTCTGTGGAATGAAATGGTTAAAGATGGAGAAATTGTATACACTGGAACAGAATCAACCCAGAACGGATAGCTCCCTCCTGGAAAAGGTAAGGGCCTTTAACTAGTG-TTTTTTATTTGGTAAAGACCATTATAAAATGCATTTTATAGAAA
s panTro5.chr15              73733718 198 -  83230942 TCTCGTTTATCATTGCCAGCTTGCATTCACAAGAGATGGGCTCTGTGGTCTGTGGAATGAAATGGTTAAAGATGGAGAAATTGTATACACTGGAACAGAATCAACCCAGAACGGAGAGCTCCCTCCTAGAAAAGGTAAGGGCCTTTAACTAGTG-TTTTTTATTTGGTAAAGACCATTATAAAATGCATTTTATAGAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037273 198 -  99763055 TCTCGTTTATCATTGCCAGCTTGCATTCACAAGAGATGGGCTCTGTGGTCTGTGGAATGAAATGGTTAAAGATGGAGAAATTGTATACACTGGAACAGAATCAACCCAGAACGGAGAGCTCCCTCCTAGAAAAGGTAAGGGCCTTTAACTAGTG-TTTTTTATTTGGTAAAGACCATTATAAAATGCATTTTATAGAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86145 198 -    281578 TCTCGTTTATCATTGCCAGCTTGCATTCACAAGAGATGGGCTCTGTGGTCTGTGGAATGAAATGGTTAAAGATGGAGAAATTGTATACACTGGAACAGAATCAACCCAGAACGGAGAGCTCCCTCCTAGAAAAGGTAAGGGCCTTTAACTAGTG-TTTTTTATTTGGTAAAGACCATTATAAAATGCATTTTATAGAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70944058 198 + 121039945 TCTCGTTTATCGTTGCCAGCTTGCATTCACAAGAGATGGGCTCTGTGGTCTGTGGAATGAAATGGTTAAAGATGGAGAAATTGTATACACTGGAACAGAATCAACCCAGAACGGAGAGCTCCCTCCTAGAAAAGGTAAGGGCCTTTAACTAGTG-TTTTTTATTTTGTAAAGACCATTATAAAATGCATTTTATAGAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164248503 198 - 169600520 TCTCGTTTATCATTGCCAGCTTGCATTCACAAGAGATGGGCTCTGTGGTCTGTGGAACGAAATGGTTAAAGATGGAGAAATTGTATACACTGGAACAGAGTCAACCCAGAACGGAGAGCTTCCTCCTAGAAAAGGTAAGGGCCTTTAACTAGTG-TTTTTTATTTTGTAAAGACCATTATAAAATGCATTTTATAGAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569324 198 - 171882078 TCTCGTTTATCATTGCCAGCTTGCATTCACAAGAGATGGGCTCTGTGGTCTGTGGAACGAAATGGTTAAAGATGGAGAAATTGTATACACTGGAACAGAATCAACCCAGAACGGAGAGCTTCCTCCTAGAAAAGGTAAGGGCCTTTAACTAGTG-TTTTTTATTTTGTAAAGACCATTATAAAATGCATTTTATAGAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       418186 198 +   2379783 TCTCGTTTATCATTGCCAGCTTGCATTCACAAGAGATGGGCTCTGTGGTCTGTGGAACGAAATGGTTAAAGATGGAGAAATTGTATACACTGGAACAGAATCAACCCAGAACGGAGAGCTTACTCCTAGAAAAGGTAAGGGCCTTTAACTAGTG-TTTTTTATTTTGTAAAGACCATTATAAAATGCATTTTATAGAAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383475 198 +   4116138 TCTCGTTTATCATTGCCAGCTTGCATTCACAAGAGATGGGCTCTGTGGTCTGTGGAACGAAATGGTTAAAGATGGAGAAATTGTATACACTGGAACAGAATCAACCCAGAACGGAGAGCTTCCTCCTAGAAAAGGTAAGGGCCTTTAACTAGTG-TTTTTTATTTTGTAAAGACCATTATAAAATGCATTTTATAGAAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53815950 198 +  58131712 TCTCGTTTATCATTGCCAGCTTGCATTCACAAGAGATGGGCTCTGTGGTCTGTGGAACGAAATGGTTAAAGATGGAGAAATTGTATACACTGGAACAGAATCAACCCAGAACGGAGAGCTTCCTCCTAGAAAAGGTAAGGGCCTTTAACTAGTG-TTTTTTATTTTGTAAAGACCATTATAAAATGCATTTTATAGAAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431422 198 -   3636681 TCTCGTTTATCATTGCCAGCTTGCATTCACAAGAGATGGGCTCTGTGGTCTGTGGAACGAAATGGTTAAAGATGGAGAAATTGTATACACTGGAACAGAATCAACCCAGAACGGAGAGCTTCCTCCTAGAAAAGGTAAGGGCCTTTAACTAGTG-TTTTTTATTTTGTAAAGACCATTATAAAATGCATTTTATAGAAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       413108 198 -   4457520 TCTCGTTTATCATTGCCAGCTTGCATTCACAAGAGATGGGCTCTGTGGTCTGTGGAACGAAATGGTTAAAGATGGAGAAATTGTATACACTGGAACAGAATCAACCCAGAATGGAGAGCTCCCTCCTAGAAAAGGTAAGGGCCTTTAACTAGTG-TTTTTTATTTTGTAAAGACCATTATAAAATGCATTTTATAGAAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154447923 198 - 158406734 TCTTGTTTATTATTGCCAGCTTGCTTTCACGAGAGATGGACTCTGTGGTTTGTGGAATGAAATGGTTAAAGATGGAGAAATTGTATACACTGGAACAGAATCAACCCAGAACGGAGAGCTCCTTACTAGAAAAGGTAAGGGACTTTAACTAGTG-TTTTTTATTTTGCAAAGCCCATTATAAAATGCATTTTATAGAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             283347 198 -   2682657 CCTTGTTTGTCATTGCCAGCTTGCTTTCACGAGAGATGGACTCTGTGGTTTGTGGAATGAAATGGTTAAAGATGGAGAAATTGTATACACTGGAACAGAATCATCCCAGAACGGAGAGCTCCCTGCTAGAAAAGGTAAGGGCCTTTAACTAGTG-TTTTTTATTTTGTAAAGACCACTATAAAATGCATTTTATAGAAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       305200 198 -   2086007 CCTCGTTTATCATTACCAGCTTGCTTTCACGAGAGATGGACTCTGTGGTTTGTGGAATGAAATGGTTAAAGATGGAGAAATTGTATACACTGGAACAGAATCAACCCAGAACGGAGAGCTCCCTACTAGAAAAGGTAAGGGCCGTTAACTAGTG-TTTTTTATTTTGTAAAGACCACTTTAAAATGCGTTTTATAGAAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       370524 198 +   3831555 TCTTGTTTATCATTGCCAGCTTGCTTTCACGAGAGATGGACTCTGTGGTTTGTGGAATGAAATGGTTAAAGATGGAGAAATTGTATACACTGGAACAGAATCAACCCAGAATGGAGAGCTCCCTACTAGAAAAGGTAAGGGCCTTTAACTAGTG-TTTTTTATTTTGTAAAGACCATTATAAAATGCATTTTACAGAAG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116210223 198 + 116334831 TCTTGTTTATCGTTGGCAGCTTGCATTCACAAGAGATGGGCTCTGTGGTCTGTGGAATGAAATGGTTAAAGATGGAGAAATTGTATATACTGGGACAGAATTAACTCAGAATGGAGAACTCCCTCCTAGAAAAGGTAAGGGCCTTTAACTAGTA-TTTTTCATTTTGTAAACACCATTATAAATTGTATTATATAGAAA
i micMur3.chr9              I 3555 I 56
s proCoq1.NW_012148396v1     13437980 199 +  16154928 TCTTGTTTATCATTGGCAGCTTGCATTCACAAGAGATGGGCTCTGTGGTCTGTGGAATGAAATGGTTAAAGATGGAGAAATTGTATATACTGGGACAGAATTAACCCAGAATGGAGAACTCCCTCCTAGAAAAGGTAAGGGCCTTTAATTAGTATTTTTTCATTTTGTAAAGACCATTATAAATTGTATTTTATAGAAA
i proCoq1.NW_012148396v1    C 0 I 1
s otoGar3.GL873689             356142 197 +   3845361 TCTTGTTTGTCATTGCCAGCTTGCTTTCACAAGAGATGGGCTCTGTGGTCTGTGGAATGAAATGGTTAAAGACGGAGAAATTGTATATACTGGGACAGAATTACCGCCGAATGGAGAGCTCCCTCCTAGAAAAGGTAA-GGCCTTTAAAGAGTA-TTTTTTACTTTGTAAAGACCATTATAATTTGTATTTTACAGAAT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59934410 198 -  91889043 TGTTATTTATCATTACTAGCTTGCATTCACAAGAGATGGGCTCTGTGGCTTGTGGAATGAAATGGTTAAAGATGGAGAAATTATATATATGGGGACAGAATTAAACCAGAATGGAGAGCTTCCTCCTAGAAAAGGTAAGGACCTTTTACTAGTA-GTTCTCATTTTGTAAAGATCTTTATAAGTTGTATTTTATAGAAA
i canFam3.chr3              C 0 C 0

a score=31122.000000
s hg38.chr15_KI270851v1_alt    161275 2 +    263054 TT
s panTro5.chr15              73733916 2 -  83230942 TT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037471 2 -  99763055 TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86343 2 -    281578 TT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70944256 2 + 121039945 TT
i nomLeu3.chr6              C 0 M 1167
s rheMac8.chr7              164248701 2 - 169600520 TT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569522 2 - 171882078 TT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       418384 2 +   2379783 TT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383673 2 +   4116138 TT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816148 2 +  58131712 TT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431620 2 -   3636681 TT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       413306 2 -   4457520 TT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154448121 2 - 158406734 TT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             283545 2 -   2682657 TT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       305398 2 -   2086007 TT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       370722 2 +   3831555 TT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13438180 2 +  16154928 TT
i proCoq1.NW_012148396v1    I 1 C 0
s otoGar3.GL873689             356339 2 +   3845361 TT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59934608 2 -  91889043 TT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116210421 56 + 116334831 I

a score=20281.000000
s hg38.chr15_KI270851v1_alt    161277 3 +    263054 TTG
s panTro5.chr15              73733918 3 -  83230942 TTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037473 3 -  99763055 TTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86345 3 -    281578 TTG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164248703 3 - 169600520 TTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569524 3 - 171882078 TTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       418386 3 +   2379783 TTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383675 3 +   4116138 TTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816150 3 +  58131712 TTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431622 3 -   3636681 TTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       413308 3 -   4457520 TTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154448123 3 - 158406734 TTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             283547 3 -   2682657 TTG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       305400 3 -   2086007 CTG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       370724 3 +   3831555 TTG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13438182 2 +  16154928 -TT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             356341 2 +   3845361 -TT
i otoGar3.GL873689          C 0 I 1
s canFam3.chr3               59934610 1 -  91889043 -T-
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116210421 56 + 116334831 I
e nomLeu3.chr6               70944258 1167 + 121039945 M

a score=1726043.000000
s hg38.chr15_KI270851v1_alt    161280 136 +    263054 TAATGTGCTATAGGAACAGGAGC-TTTGAGCTTAACTCTTTGAAGTTTTGCTTTTTACTTTGGAGATTGTTGTCTAAA--ATGGTAGTTAATA---CAAGCTGCCCGGATTTTATTGTTTTACGTGAATTGAAGGCATTTTT
s panTro5.chr15              73733921 136 -  83230942 TAATGTGCTATAGGAACAGGAGC-TTTGAGCTTAACTCTTTGAAGTTTTGCTTTTTACTTTGGAGATTGTTGTCTAAA--ATGGTAGTTAATA---CAAGCTGCCCGGATTTTATTGTTTTACGTGAATTGAAGGCATTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037476 136 -  99763055 TAATGTGCTATAGGAACAGGAGC-TTTGAGCTTAACTCTTTGAAGTTTTGCTTTTTACTTTGGAGATTGTTGTCTAAA--ATGGTAGTTAATA---CAAGCTGCCCGGATTTTATTGTTTTACGTGAATTGAAGGCATTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86348 136 -    281578 TAATGTGCTATAGGAACAGGAGC-TTTGAGCTTAACTCTTTGAAGTTTTGCTTTTTACTTTGGAGATTGTTGTCTAAA--ATGGTAGTTAATA---CAAGCTGCCCGGATTTTATTGTTTTACGTGAATTGAAGGCATTTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164248706 136 - 169600520 TAATGCGCTATAGGAATAGGAGC-TTTGAGCTTAACTCTTTGAAGTTTTGCTTTTTACTTTGGAGATTGTTGTCTAAA--ATGGTAGTTAATA---CAAGCTGCCCGGATTTTATTGTTTTATGTGAATTGAAGGCATTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569527 136 - 171882078 TAATGCGCTATAGGAATAGGAGC-TTTGAGCTTAACTCTTTGAAGTTTTGCTTTTTACTTTGGAGATTGTTGTCTAAA--ATGGTAGTTAATA---CAAGCTGCCCGGATTTTATTGTTTTATGTGAATTGAAGGCATTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       418389 136 +   2379783 TAATGCGCTATAGGAATAGGAGC-TTTGAGCTTAACTCTTTGAAGTTTTGCTTTTTACTTTGGAGATTGTTGTCTAAA--ATGGTAGTTAATA---CAAGCTGCCCGGATTTTATTGTTTTATGTGAATTGAAGGCATTTTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383678 136 +   4116138 TAATGCGCTATAGGAATAGGAGC-TTTGAGCTTAACTCTTTGAAGTTTTGCTTTTTACTTTGGAGATTGTTGTCTAAA--ATGGTAGTTAATA---CAAGCTGCCCGGATTTTATTGTTTTATGTGAATTGAAGGCATTTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816153 136 +  58131712 TAATGCGCTATAGGAATAGGAGC-TTTGAGCTTAACTCTTTGAAGTTTTGCTTTTTACTTTGGAGATTGTTGTCTAAA--ATGGTAGTTAATA---CAAGCTGCCTGGATTTTATTGTTTTATGTGAATTGAAGGCATTTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431625 136 -   3636681 TAATGCGCTCCAGGAATAGGAGC-TTTGAGCTTAACTCTTTGAAGTTTTGCTTTTTACTTTGGAGATTGTTGTCTAAA--ATGGTAGTTAATA---CAAGCTGCCCGGATTTTATTGTTTTATGTGAATTGAAGGCATTTTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       413311 136 -   4457520 TAATGCGCTATAGGAATAGGAGC-TTTGAGCTTAACTCTTTGAAGTTTTGCTTTTTACTTTGGAGATTGTTGTCTAAA--ATGGTAGTTAATA---CAAGCTGCCCGGATTTTATTGTTTTATGTGAATTGAAGATATTTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154448126 136 - 158406734 TAATGTGCTATAGGAACAGGAAC-TTTGACCTTACCTCTTTGAAGTTTTGCTTTTTACTCTGGAGATTGTTGTCTAAA--ATGGTAGTTAATA---CAAGCTGCCTGGATTTTCTTGTTTTATGTGAATTGAAGGTATTATT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             283550 136 -   2682657 TAATGTGCTATAGGAACAAGAGC-TTCGAGCTTACCTCTTTCAAGTTTTGCCTTTTACTTTGGAGATTGTTATCTAAA--ATGGTCGTTAACA---CAAGCTGCCTGGATTGTATTGTTTTATGTGAATTGAAGGCATTTTT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       305403 135 -   2086007 TAATGTGCTGTAGGAACAGGAAC-TTCGAGCTTACCTCTTTGAAG-TTTGCCTTTTACTTTGGAGATTGTTGTCTAAA--ATGGTAGCTAATA---CAAGCTGCCTGGATTTTATTGTTTTATGTGAATTGAAGACATTTTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       370727 136 +   3831555 TAATGTGCTATAGGTACAGGAAC-TTCGAGCTTACCTCTTTGAAGTTTTGCTTTTTACTTTGGAGATTGTTGTCTAAA--ATGGTAGTTAATA---CAAGCTGCCTGGATTTTATTGTTTTATGTGAATTGAAGGCATTTTT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116210477 140 + 116334831 TAATGTGCTATAGGAACAGGAGCTTTTGAACATAACTCTTTGAAGTTTTATTTTTCACTTTGATGATTGTTTTCTAAA--ATGATAGTTAATATTATAAACTACTTGGATTTCATTGTTTTATGTGAATTGAAGGCAGTTTT
i micMur3.chr9              I 56 C 0
s proCoq1.NW_012148396v1     13438184 140 +  16154928 TAATGTGCTATAGGAACAGGAGCTTTTGAACATAACTCTTTGAAGTTTTGTTTTTCACTTTGATGATTGTTGTCTAAA--ATGATAGTTAATATTATAAACTATGTGGATTTTATTGTTTTATGTGAATTGAAGGCATTTTT
i proCoq1.NW_012148396v1    C 0 I 182
s otoGar3.GL873689             356344 137 +   3845361 TAATGTGCTGTAGGAATGGAAGCTTTTGAACAAAACTCTATGAAGTTTTGTTTTTCA-TTTGATTATT-TTGTCTAAA--ATGATAGTTAATATTTTAAACCACATGGATATTATTGTTTTGTATGTACCGAAGGCATTTT-
i otoGar3.GL873689          I 1 C 0
s canFam3.chr3               59934611 134 -  91889043 TAATGTGCAATAGGAATAGGAGTGTCTAAATATAACTCT-TGAAATTTTGTTTT---CACTGGAGATTGTTGTCTGCATTACAGTAAACATTA---TGAACTACCTGGATTTCATTGCTCTTTGTAAA-TGAAGGTCTTTTC
i canFam3.chr3              C 0 C 0
e nomLeu3.chr6               70944258 1167 + 121039945 M

a score=325710.000000
s hg38.chr15_KI270851v1_alt    161416  33 +    263054 ATTGCAAAACCGTCTTGCTGC---------------------------------------------------------------------------------------------------ATTTGTGGTGTT
s panTro5.chr15              73734057  33 -  83230942 ATTGCAAAACCATCTTGCCGC---------------------------------------------------------------------------------------------------ATTTGTGGTGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037612  33 -  99763055 ATTGCAAAACCATCTTGCCGC---------------------------------------------------------------------------------------------------ATTTGTGGTGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86484  33 -    281578 ATTGCAAAACCATCTTGCTGC---------------------------------------------------------------------------------------------------ATTTGTGGTGTT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164248842  33 - 169600520 ATTGCAAAACCGTCTTGCTGC---------------------------------------------------------------------------------------------------ATTTGTGGTGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569663  33 - 171882078 ATTGCAAAACCGTCTTGCTGC---------------------------------------------------------------------------------------------------ATTTGTGGTGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       418525  33 +   2379783 ATTGCAAAACCGTCTTGCTGC---------------------------------------------------------------------------------------------------ATTTGTGGTGTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383814  33 +   4116138 ATTGCAAAACCTTCTTGCTGC---------------------------------------------------------------------------------------------------ATTTGTGGTGTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816289  33 +  58131712 ATTGCAAAACCGTCTTGCTGC---------------------------------------------------------------------------------------------------ATTTGTGGTGTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431761  33 -   3636681 ATTGCAAAACCGTCTTGCTGC---------------------------------------------------------------------------------------------------ATTTGTGGTGTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       413447  33 -   4457520 ATTGCAAAACCGTCTTGCTGC---------------------------------------------------------------------------------------------------ATTTGTGGTGTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154448262  33 - 158406734 ATTGCAAAACCATCTTGCTGC---------------------------------------------------------------------------------------------------ATTTGTGGTGTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             283686  33 -   2682657 ATTGCAAAACCATCTTGCTGC---------------------------------------------------------------------------------------------------ATGTGTGGTGTT
i saiBol1.JH378292          C 0 I 138
s cebCap1.NW_016107707v1       305538  32 -   2086007 A-TGCAAAACCATCTTGCCGC---------------------------------------------------------------------------------------------------ATTTGTGGTGTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       370863  33 +   3831555 ATTGCAAAACCATCTTGCTGC---------------------------------------------------------------------------------------------------ATTTGTGGTGTT
i aotNan1.NW_018503298v1    C 0 I 140
s micMur3.chr9              116210617  33 + 116334831 GTTGTAAAACCACCTGTCTGT---------------------------------------------------------------------------------------------------ATTTGTAGTGTT
i micMur3.chr9              C 0 I 153
s otoGar3.GL873689             356481  32 +   3845361 ATTGTACCACCACTTGGCTGC---------------------------------------------------------------------------------------------------ATTT-TGGTGTC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59934745 132 -  91889043 ATTGCAAAGCTACCTTGCTGTGGTGTCCTTCCCAGTTAATATTTCTTTTTAAGTTTTGTAATATATCTTGCTTTGGCTAACTGTAAATAATGATTATTATAAGATTGAGTGGAAACGATGATTTCTGAAATT
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13438324 182 +  16154928 I
e nomLeu3.chr6               70944258 1167 + 121039945 M

a score=42904.000000
s hg38.chr15_KI270851v1_alt    161449  4 +    263054 --------CTTT-----
s panTro5.chr15              73734090  4 -  83230942 --------CTTT-----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037645  4 -  99763055 --------CTTT-----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86517  4 -    281578 --------CTTT-----
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164248875  4 - 169600520 --------CTTT-----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569696  4 - 171882078 --------CTTT-----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       418558  4 +   2379783 --------CTTT-----
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383847  4 +   4116138 --------CTTT-----
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816322  4 +  58131712 --------CTTT-----
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431794  4 -   3636681 --------CTTT-----
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       413480  4 -   4457520 --------CTTT-----
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154448295  4 - 158406734 --------TTTT-----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             283857  4 -   2682657 --------CTTT-----
i saiBol1.JH378292          I 138 C 0
s cebCap1.NW_016107707v1       305570  4 -   2086007 --------CTTT-----
i cebCap1.NW_016107707v1    C 0 I 127
s aotNan1.NW_018503298v1       371036  4 +   3831555 --------CTTT-----
i aotNan1.NW_018503298v1    I 140 C 0
s micMur3.chr9              116210803  4 + 116334831 --------CTTT-----
i micMur3.chr9              I 153 C 0
s proCoq1.NW_012148396v1     13438506  4 +  16154928 --------CTTT-----
i proCoq1.NW_012148396v1    I 182 C 0
s otoGar3.GL873689             356513  4 +   3845361 --------TTTT-----
i otoGar3.GL873689          C 0 I 455
s canFam3.chr3               59934877 17 -  91889043 TTTCCTGGCTCTCCTGT
i canFam3.chr3              C 0 C 0
e nomLeu3.chr6               70944258 1167 + 121039945 M

a score=11504.000000
s hg38.chr15_KI270851v1_alt    161453 1 +    263054 G
s panTro5.chr15              73734094 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037649 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86521 1 -    281578 G
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164248879 1 - 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569700 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       418562 1 +   2379783 G
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383851 1 +   4116138 G
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816326 1 +  58131712 G
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431798 1 -   3636681 G
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       413484 1 -   4457520 G
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154448299 1 - 158406734 A
i calJac3.chr6              C 0 I 138
s saiBol1.JH378292             283861 1 -   2682657 G
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       371040 1 +   3831555 G
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116210807 1 + 116334831 G
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13438510 1 +  16154928 G
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59934894 1 -  91889043 G
i canFam3.chr3              C 0 C 0
e otoGar3.GL873689             356517 455 +   3845361 I
e cebCap1.NW_016107707v1       305574 127 -   2086007 I
e nomLeu3.chr6               70944258 1167 + 121039945 M

a score=162633.000000
s hg38.chr15_KI270851v1_alt    161454 19 +    263054 GGGGTGTATTAAACACT-TA
s panTro5.chr15              73734095 19 -  83230942 GGGGTGTATTAAACACT-TA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037650 19 -  99763055 GGGGTGTATTAAACACT-TA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86522 19 -    281578 GGGGTGTATTAAACACT-TA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164248880 19 - 169600520 GGAGTATATTAAACACT-TT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569701 19 - 171882078 GGAGTATATTAAACACT-TT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       418563 19 +   2379783 GGAGTATATTAAACACT-TT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383852 19 +   4116138 GGAGTATATTAAACACT-TT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816327 19 +  58131712 GGAATATATTAAACACT-TT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431799 19 -   3636681 GGAGTATATTAAACACT-TT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       413485 19 -   4457520 GGAGTATATTAAACACT-TT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154448438 20 - 158406734 GGAGTATATTATACACGTTT
i calJac3.chr6              I 138 C 0
s saiBol1.JH378292             283862 19 -   2682657 GGAGTATATTTCATACA-TT
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       371041 19 +   3831555 GGAGTGTATTACACACA-TT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116210808 19 + 116334831 GAAGTGTATAAAACACT-TT
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13438511 19 +  16154928 GGAGTGTGTAAAACACT-TT
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59934895 19 -  91889043 GCAACATATAAAACACT-TT
i canFam3.chr3              C 0 C 0
e otoGar3.GL873689             356517 455 +   3845361 I
e cebCap1.NW_016107707v1       305574 127 -   2086007 I
e nomLeu3.chr6               70944258 1167 + 121039945 M

a score=54245.000000
s hg38.chr15_KI270851v1_alt    161473 4 +    263054 TTGG
s panTro5.chr15              73734114 4 -  83230942 TTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037669 4 -  99763055 TTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86541 4 -    281578 TTGG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164248899 4 - 169600520 TTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569720 4 - 171882078 TTGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       418582 4 +   2379783 TTGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383871 4 +   4116138 TTGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816346 4 +  58131712 TTGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431818 4 -   3636681 TTGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       413504 4 -   4457520 TTGG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154448458 4 - 158406734 TTGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             283881 4 -   2682657 TTGG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       305701 4 -   2086007 TTGG
i cebCap1.NW_016107707v1    I 127 C 0
s aotNan1.NW_018503298v1       371060 4 +   3831555 TTGG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116210827 4 + 116334831 TTAG
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13438530 4 +  16154928 TTAG
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59934914 4 -  91889043 TTGG
i canFam3.chr3              C 0 C 0
e otoGar3.GL873689             356517 455 +   3845361 I
e nomLeu3.chr6               70944258 1167 + 121039945 M

a score=499255.000000
s hg38.chr15_KI270851v1_alt    161477 45 +    263054 AAGCCTTTGG-CC---------------------------------------------TGCAAGGAAATGCCATTGAACAATCTTATTTAG
s panTro5.chr15              73734118 45 -  83230942 AAGCCTTTGG-CC---------------------------------------------TGCAAGGAAATGCCATTGAACAATCTTATTTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037673 45 -  99763055 AAGCCTTTGG-CC---------------------------------------------TGCAAGGAAATGCCATTGAACAATCTTATTTAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86545 45 -    281578 AAGCCTTTGG-CC---------------------------------------------TGCAAGGAAATGCCATTGAACAATATTATTTAG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164248903 45 - 169600520 AAGCCTTTGC-CC---------------------------------------------TGCAACGAAATGCCACTGAACGATCTTATTTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569724 45 - 171882078 AAGCCTTTGC-CC---------------------------------------------TGCAACGAAATGCCACTGAACGATCTTATTTAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       418586 45 +   2379783 AAGCCTTTGC-CC---------------------------------------------TGCAACGAAATGCCACTGAACGATCTTATTTAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383875 45 +   4116138 AAGCCTTTGC-CC---------------------------------------------TGCAACAAAATGCCACTGAACGATCTTATTTAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816350 45 +  58131712 AAGCCTTTGC-CC---------------------------------------------TGCAACGAAATGCCACTGAACGATCTTATTTAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431822 45 -   3636681 AAGCCTTTGC-CC---------------------------------------------TGCAACGAAATGCCACTGAACGATCTTATTTAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       413508 45 -   4457520 AAGCCTTTGG-CC---------------------------------------------TGCAACGAAATGCCACTGAACAATCTTATTTAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154448462 44 - 158406734 AAGCCTTTGG-CC---------------------------------------------TGCAAGG-AATGCCAGTGAACAATCTTATTTAG
i calJac3.chr6              C 0 I 315
s saiBol1.JH378292             283885 45 -   2682657 AATCCTTTGG-CC---------------------------------------------TGCAAGGAAATGCCAGTGAACAATCTTACTTAG
i saiBol1.JH378292          C 0 I 1
s cebCap1.NW_016107707v1       305705 45 -   2086007 AAGCCTTTGG-CC---------------------------------------------TGCAAGGAAATGGCAGTGAACAATCTTATTTAG
i cebCap1.NW_016107707v1    C 0 I 3527
s aotNan1.NW_018503298v1       371064 45 +   3831555 AAGCCTTTGG-CC---------------------------------------------TGCAAGGAAATGCCAGTGAACAATCTTATTTAG
i aotNan1.NW_018503298v1    C 0 I 1
s micMur3.chr9              116210831 45 + 116334831 AAGCCTTTGG-TC---------------------------------------------CACAAGGAAATGCCAGTGAGCAATCTTACTTAG
i micMur3.chr9              C 0 I 147
s proCoq1.NW_012148396v1     13438534 45 +  16154928 AATCCTTTGG-CC---------------------------------------------CACAAAGAAATGGCAATGAGCAATCTTATTTAG
i proCoq1.NW_012148396v1    C 0 I 839
s otoGar3.GL873689             356972 38 +   3845361 aaGCCTTTGGTTT---------------------------------------------TGCAAGGAAATGCCAGTGAACAATC--------
i otoGar3.GL873689          I 455 C 0
s canFam3.chr3               59934918 88 -  91889043 AAGTCTTTCA-CCCATGGATTAGACTTGGCCCCTTATTTGATTTAATCTTGTATTTTTCATAGGGAAATACCAGCAAATA--CTCGTTTAG
i canFam3.chr3              C 0 C 0
e nomLeu3.chr6               70944258 1167 + 121039945 M

a score=-10445.000000
s hg38.chr15_KI270851v1_alt    161522 2 +    263054 -CG
s panTro5.chr15              73734163 2 -  83230942 -CG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037718 2 -  99763055 -CG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86590 2 -    281578 -CG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164248948 2 - 169600520 -TA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569769 2 - 171882078 -TA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       418631 2 +   2379783 -TA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383920 2 +   4116138 -TA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816395 2 +  58131712 -TA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431867 2 -   3636681 -TA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       413553 2 -   4457520 -TA
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             283931 1 -   2682657 -C-
i saiBol1.JH378292          I 1 C 0
s aotNan1.NW_018503298v1       371110 1 +   3831555 -C-
i aotNan1.NW_018503298v1    I 1 C 0
s canFam3.chr3               59935006 2 -  91889043 GC-
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116210876 147 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e otoGar3.GL873689             357010 0 +   3845361 C
e cebCap1.NW_016107707v1       305750 3527 -   2086007 I
e nomLeu3.chr6               70944258 1167 + 121039945 M
e calJac3.chr6              154448506 315 - 158406734 I

a score=91311.000000
s hg38.chr15_KI270851v1_alt    161524 10 +    263054 TTGTAGTTTT
s panTro5.chr15              73734165 10 -  83230942 TTGTAGTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037720 10 -  99763055 TTGTAGTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86592 10 -    281578 TTGTAGTTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164248950 10 - 169600520 TTGTAGTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569771 10 - 171882078 TTGTAGTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       418633 10 +   2379783 TTGTAGTTTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383922 10 +   4116138 TTGTAGTTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816397 10 +  58131712 TTGTAGTTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431869 10 -   3636681 TTGTAGTTTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       413555 10 -   4457520 TTGTAGTTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154448821 10 - 158406734 TTGTAGTTTT
i calJac3.chr6              I 315 C 0
s saiBol1.JH378292             283932 10 -   2682657 TTGTAGTTTT
i saiBol1.JH378292          C 0 M 1872
s aotNan1.NW_018503298v1       371111 10 +   3831555 TTGTAGtttt
i aotNan1.NW_018503298v1    C 0 I 326
s otoGar3.GL873689             357010  9 +   3845361 -TGTGGTCAT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59935008 10 -  91889043 CTATTGTTAC
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116210876 147 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e cebCap1.NW_016107707v1       305750 3527 -   2086007 I
e nomLeu3.chr6               70944258 1167 + 121039945 M

a score=19147.000000
s hg38.chr15_KI270851v1_alt    161534 6 +    263054 -GCATGC
s panTro5.chr15              73734175 6 -  83230942 -GCATGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037730 6 -  99763055 -GCATGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86602 6 -    281578 -GCATGC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164248960 6 - 169600520 -GAAAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569781 6 - 171882078 -GAAAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       418643 6 +   2379783 -GAAAGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383932 6 +   4116138 -GAAAGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816407 6 +  58131712 -GAAAGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431879 6 -   3636681 -GAAAGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       413565 6 -   4457520 -GAAAGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154448831 6 - 158406734 -GAGAGA
i calJac3.chr6              C 0 C 0
s otoGar3.GL873689             357019 6 +   3845361 -GAAAAT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59935018 6 -  91889043 GAAAAG-
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116210876 147 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e aotNan1.NW_018503298v1       371121 326 +   3831555 I
e cebCap1.NW_016107707v1       305750 3527 -   2086007 I
e nomLeu3.chr6               70944258 1167 + 121039945 M
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=92884.000000
s hg38.chr15_KI270851v1_alt    161540 11 +    263054 TCAATAGGACT
s panTro5.chr15              73734181 11 -  83230942 TCAATAAGACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037736 11 -  99763055 TCAATAAGACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86608 11 -    281578 TCAATAAGACT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164248966 11 - 169600520 TCAGTAAGACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569787 11 - 171882078 TCAGTAAGACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       418649 11 +   2379783 TCAGTAAGACT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383938 11 +   4116138 TCAGTAAGACT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816413 11 +  58131712 TCGGTAAGACT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431885 11 -   3636681 TCAGTAAGACT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       413571 11 -   4457520 TCGATAAGACT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154448837 11 - 158406734 TCAATAAGACT
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       309277 11 -   2086007 TCAATAAGACT
i cebCap1.NW_016107707v1    I 3527 C 0
s otoGar3.GL873689             357025 11 +   3845361 TCAGTAAGATT
i otoGar3.GL873689          C 0 I 3
s canFam3.chr3               59935024 11 -  91889043 TCAACAAGACT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116210876 147 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e aotNan1.NW_018503298v1       371121 326 +   3831555 I
e nomLeu3.chr6               70944258 1167 + 121039945 M
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=738739.000000
s hg38.chr15_KI270851v1_alt    161551  93 +    263054 ATCATTAGGTTGTTCATAACAGTGGCTGTG---------TTTCAGAGTCCCCATTGAGG-----TTT---AAAAAAATGGATGCTTGTATACACCCTAAACTT-GTTGAAT
s panTro5.chr15              73734192  93 -  83230942 ATCATTATGTTGTTCATAACAGTGGCTGTG---------TTTCAGAGTCCCCATTGAGG-----TTT---AAAAAAATGGATGCTTGTATACACCCTAAAATT-ATTGAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037747  93 -  99763055 ATCATTATGTTGTTCATAACAGTGGCTGTG---------TTTCAGAGTCCCCATTGAGG-----TTT---AAAAAAATGGTTGCTTGTATACACCCTAAACTT-GTTGAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86619  93 -    281578 ATCATTAGGTTGTTCACAACAGTGGCTGTG---------TTTCAGAGTCCCCATTGAGG-----TTT---AAAAAAATGAATGCTTGTATATACCCTAAACTT-GTTGAAT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164248977  93 - 169600520 ATCATTAGGTTGTTCATAACTGTGGCTGTG---------TTTCAGAATCCCCATTGAGG-----TTT---AAAAAAATGGGTGCTTGTATACACCCTAAACTT-GTTGAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165569798  93 - 171882078 ATCATTAGGTTGTTCATAACTGTGGCTGTG---------TTTCAGAATCCCCATTGAGG-----TTT---AAAAAAATGGGTGCTTGTATACACCCTAAACTT-GTTGAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       418660  93 +   2379783 ATCATTAGGTTGTTCATAACTGTGGCTGTG---------TTTCAGAATCCCCATTGAGG-----TTT---AAAAAAATGGGTGCTTGTATACACCCTAAACTT-GTTGAAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       383949  93 +   4116138 GTCATTAGgttgttcataactgtggctgtg---------tttcagaatccccattgagg-----ttt---aaaaaaatgggtgcttgtatacaccctaaactt-gttgaat
i cerAty1.NW_012001462v1    C 0 I 1588
s chlSab2.chr26              53816424  94 +  58131712 ATCATTAGGTTGTTCATAACTGTGGCTGGG---------TTTCAGAATCCCCATTGAGG----TTTT---AAAAAAATGGGTGCTTGTATACACCCTAAACTT-GTTGAAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       431896  93 -   3636681 ATCATTAGGTTGTTCATAACTGTGGCTGTG---------TTTCAGAATCCCCATTGAGG-----TTT---AAAAAAATGGGTGCTTGTATACACCCTACACTT-GTCGAAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       413582  94 -   4457520 GTCATTAGGTTGTTCATAACTGTGGCTGTG---------TTTCAGAATCCCCATTGAGG-----TTT--AAAAAAAATGGGTGCTTGTATACACCCTAAACTT-GTTGAAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154448848  97 - 158406734 ATCGTTAGGTTGTTCATAACTGTGGCTGTG---------TGTCAGAATCACTATTGAGG-TTTTTTT---TAAAAAATGGGTGCTTGTATATACCCTAAACTT-GGTGAAT
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       309288  97 -   2086007 ATTGTTAGGTTGTTCATAACTGTGG-TGTG---------TGTCAGAATCACTATTGAGGTTTTTTTT---TAAAAAATGGGTGCTTGTATATACTCTAAACTT-GGTGAAT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       371447  98 +   3831555 ATCATTAGGTTGTTCATAACTGTGGCTATG---------TGTCAGAATCACTATTGAGGTTTTTTTT---AAAAAAATGGGTGCTTGTATATACCCTAAGCTT-GGTGAAT
i aotNan1.NW_018503298v1    I 326 C 0
s otoGar3.GL873689             357039 106 +   3845361 GTCGTTTGCTGGTTCTTGACTTTGTCAGGATATATCAGTTATCAGAATCACCGTCAAGG--CTGTAC---AGGGAAATACATGCCTGTACCCACCCCAAACTCAATTGCCT
i otoGar3.GL873689          I 3 C 0
s canFam3.chr3               59935035  93 -  91889043 ATCATTcagttgttcttgactttggccatg---------agtcagaa--actgttgagg-----ctttaaaaagaaatggatgtctgtaccc-caccagacct-gtagaat
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116210876 147 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e nomLeu3.chr6               70944258 1167 + 121039945 M
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=26223.000000
s hg38.chr15_KI270851v1_alt    161644 4 +    263054 CTGA
s panTro5.chr15              73734285 4 -  83230942 CTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037840 4 -  99763055 CTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86712 4 -    281578 CTGA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164249070 3 - 169600520 -TGG
i rheMac8.chr7              C 0 I 141
s macFas5.chr7              165569891 3 - 171882078 -TGG
i macFas5.chr7              C 0 I 141
s macNem1.NW_012011934v1       418753 3 +   2379783 -TGG
i macNem1.NW_012011934v1    C 0 I 1
s cerAty1.NW_012001462v1       385630 3 +   4116138 -CGG
i cerAty1.NW_012001462v1    I 1588 I 1
s chlSab2.chr26              53816518 3 +  58131712 -TGG
i chlSab2.chr26             C 0 I 1
s manLeu1.NW_012102332v1       431989 3 -   3636681 -TGG
i manLeu1.NW_012102332v1    C 0 I 1
s colAng1.NW_012115278v1       413676 3 -   4457520 -TGG
i colAng1.NW_012115278v1    C 0 I 1
s calJac3.chr6              154448945 4 - 158406734 CTGA
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       309385 4 -   2086007 CTGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       371545 4 +   3831555 CTGA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             357145 4 +   3845361 CTGA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59935128 4 -  91889043 ctga
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116210876 147 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e nomLeu3.chr6               70944258 1167 + 121039945 M
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=140421.000000
s hg38.chr15_KI270851v1_alt    161648 18 +    263054 AAAGATCCTTGGTTGAGA
s panTro5.chr15              73734289 18 -  83230942 AAAGATCCTTGGTTGAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037844 18 -  99763055 AAAGATCCTTGGTTGAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86716 18 -    281578 AAAGATCCTTGGTTGAGA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164249214 18 - 169600520 AAAGATCCTTGGTTGAGA
i rheMac8.chr7              I 141 C 0
s macFas5.chr7              165570035 18 - 171882078 AAAGATCCTTGGTTGAGA
i macFas5.chr7              I 141 C 0
s macNem1.NW_012011934v1       418757 18 +   2379783 AAAGATCCTTGGTTGAGA
i macNem1.NW_012011934v1    I 1 I 755
s cerAty1.NW_012001462v1       385634 18 +   4116138 AAAGATCCTTGGTTGAGA
i cerAty1.NW_012001462v1    I 1 C 0
s chlSab2.chr26              53816522 18 +  58131712 AAAGATCCTTGGTTGAGA
i chlSab2.chr26             I 1 C 0
s manLeu1.NW_012102332v1       431993 18 -   3636681 AAAGATGCTTGGTTGAGA
i manLeu1.NW_012102332v1    I 1 I 211
s colAng1.NW_012115278v1       413680 18 -   4457520 AAAGATCCTTGGTTGAGA
i colAng1.NW_012115278v1    I 1 I 783
s calJac3.chr6              154448949 16 - 158406734 --AAAGCCTTGCTTGAGA
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       309389 16 -   2086007 --AAAGCCTTGCTTGAGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       371549 16 +   3831555 --AAAGCCTTGCTTGAGA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             357149 16 +   3845361 --ACAGCTTGGGTTGGGA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59935132 16 -  91889043 --AAGTCCCCTCTTGAGA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116210876 147 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e nomLeu3.chr6               70944258 1167 + 121039945 M
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=9038.000000
s hg38.chr15_KI270851v1_alt    161666 4 +    263054 ACCA
s panTro5.chr15              73734307 4 -  83230942 ACCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037862 4 -  99763055 ACCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86734 4 -    281578 ACCA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164249232 4 - 169600520 CCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570053 4 - 171882078 CCCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       385652 4 +   4116138 CCCG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816540 4 +  58131712 CCCA
i chlSab2.chr26             C 0 I 210
s calJac3.chr6              154448965 4 - 158406734 CCCA
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       309405 4 -   2086007 CCCA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       371565 4 +   3831555 CCCA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             357165 4 +   3845361 TTCA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59935148 1 -  91889043 -T--
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116210876 147 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e nomLeu3.chr6               70944258 1167 + 121039945 M
e colAng1.NW_012115278v1       413698 783 -   4457520 I
e manLeu1.NW_012102332v1       432011 211 -   3636681 I
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=3465.000000
s hg38.chr15_KI270851v1_alt    161670 1 +    263054 C
s panTro5.chr15              73734311 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037866 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86738 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164249236 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570057 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       385656 1 +   4116138 T
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816754 1 +  58131712 T
i chlSab2.chr26             I 210 C 0
s calJac3.chr6              154448969 1 - 158406734 T
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       309409 1 -   2086007 T
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       371569 1 +   3831555 T
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             357169 1 +   3845361 C
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59935149 1 -  91889043 C
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116210876 147 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e nomLeu3.chr6               70944258 1167 + 121039945 M
e colAng1.NW_012115278v1       413698 783 -   4457520 I
e manLeu1.NW_012102332v1       432011 211 -   3636681 I
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=72580.000000
s hg38.chr15_KI270851v1_alt    161671 11 +    263054 TGTTGAAGTTC
s panTro5.chr15              73734312 11 -  83230942 TGTTGAAGTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037867 11 -  99763055 TGTTGAAGTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86739 10 -    281578 TGTTGAAGTT-
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164249237 11 - 169600520 TGTTGAAGTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570058 11 - 171882078 TGTTGAAGTTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       385657 11 +   4116138 TGTTGAAGTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816755 11 +  58131712 TGTTGAAGTTT
i chlSab2.chr26             C 0 C 0
s calJac3.chr6              154448970 11 - 158406734 TGTTGAAGTTT
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       309410 11 -   2086007 TGTTGAAGTTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       371570 11 +   3831555 TGTTGAAGTTT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116211023 11 + 116334831 TGTTGAAGTTT
i micMur3.chr9              I 147 C 0
s otoGar3.GL873689             357170 11 +   3845361 TGCAGAAGTTT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59935150 11 -  91889043 TGCCAAAATTT
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e nomLeu3.chr6               70944258 1167 + 121039945 M
e colAng1.NW_012115278v1       413698 783 -   4457520 I
e manLeu1.NW_012102332v1       432011 211 -   3636681 I
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=391701.000000
s hg38.chr15_KI270851v1_alt    161682 52 +    263054 GTTGGTCCCCCTGCTTGAGAGTCATCAACGTGGATAAAGCTACCACTTTAGA
s panTro5.chr15              73734323 52 -  83230942 GTTGGTCCCCCTGCTTGAGAGTCATCAACGTGAATAAAGCTACCACTTTAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037878 52 -  99763055 GTTGGTCCCCCTGCTTGAGAGTCATCAACGTGGATAAAGCTACCACTTTAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86749 52 -    281578 GTTGGTCCCCCTACTTGAGAGTCATCAACGTGGATAAAGCTACCACTTTAGA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164249248 52 - 169600520 GTTGGTCCTCCTACTTGAGAGTCATCAACATGGATAAAGCTACCACTTTAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570069 52 - 171882078 GTTGGTCCTCCTACTTGAGAGTCATCAACATGGATAAAGCTACCACTTTAGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       385668 52 +   4116138 GTTGGTCCTCCTACTTGAGAGTCATCAACATGGATAAAGCTACCACTTTAGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816766 52 +  58131712 GTTGGTCCTCCTACTTGAGAGTCATCAACATGGATAAAGCTACCACTTTAGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       432222 52 -   3636681 GTTGGTCCTCCTACTTGAGAGTCATCAACATGGATAAAGCTACCACTTTAGA
i manLeu1.NW_012102332v1    I 211 C 0
s calJac3.chr6              154448981 52 - 158406734 GTTGGTCCACCTACTTGAAAGTCATCAACATGGATAAAGCTACTACCTTAGA
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       309421 52 -   2086007 GTTGGTCCACCTACTTGAGAGTCATCAACATGGAGAAAGCTACTACCTTAGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       371581 52 +   3831555 GTTGGTCCACCTACTTGAGAGTCAACAACATGGATAAAGCTACTACCTTAGA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116211034 49 + 116334831 GTTGCTCCCCCTACTTAAAAGTCCTCAAGATGGATAAAGCT---ACTTTAGA
i micMur3.chr9              C 0 C 0
s otoGar3.GL873689             357181 48 +   3845361 GTTAGTCCCACTACTT-GAAGTCATCATGGTGGATAAAGCT---GCTTTAGA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59935161 51 -  91889043 GTTAGTCCCACTATTTGAAAGTCATGAAGGTGGATAAAAATAGTACTTTAA-
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e nomLeu3.chr6               70944258 1167 + 121039945 M
e colAng1.NW_012115278v1       413698 783 -   4457520 I
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=59002.000000
s hg38.chr15_KI270851v1_alt    161734 8 +    263054 AAGTATTT
s panTro5.chr15              73734375 8 -  83230942 AAGTATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037930 8 -  99763055 AAGTATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86801 8 -    281578 AAGTATTT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164249300 8 - 169600520 AGGTATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570121 8 - 171882078 AGGTATTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       385720 8 +   4116138 AGGTATTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816818 8 +  58131712 AGGTATTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       432274 8 -   3636681 AGGTATTT
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154449033 8 - 158406734 AAGTATTT
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       309473 8 -   2086007 AAGTATTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       371633 8 +   3831555 AAGTATTT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116211083 8 + 116334831 AAGTATTT
i micMur3.chr9              C 0 I 1146
s canFam3.chr3               59935212 8 -  91889043 AAGTAGTT
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e otoGar3.GL873689             357229 0 +   3845361 C
e nomLeu3.chr6               70944258 1167 + 121039945 M
e colAng1.NW_012115278v1       413698 783 -   4457520 I
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=239391.000000
s hg38.chr15_KI270851v1_alt    161742 45 +    263054 ---ATTCTA-----------Agttgaaata--gctcagttg----------ggagagcattag--------tctgaaga
s panTro5.chr15              73734383 45 -  83230942 ---ATTCTA-----------Agttgaaata--gctcagttg----------ggagagcattag--------tctgaaga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037938 45 -  99763055 ---ATTCTA-----------Agttgaaata--gctcagttg----------ggagagcattag--------tctgaaga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86809 45 -    281578 ---ATTCTA-----------Agttgaaata--gctcagttg----------ggagagcattag--------tctgaaga
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164249308 45 - 169600520 ---CTTCTC-----------Agttgaaata--gctcagttg----------ggagagcattag--------actgaaga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570129 45 - 171882078 ---CTTCTC-----------Agttgaaata--gctcagttg----------ggagagcattag--------actgaaga
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       385728 45 +   4116138 ---CTTCTC-----------Agttgaaata--gctcagttg----------ggagagcattag--------actgaaga
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816826 45 +  58131712 ---CTTCTA-----------Agttgaaata--gctcagttg----------ggagagcattag--------actgaaga
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       432282 45 -   3636681 ---CTTCTC-----------Agttgaaata--gctcagttg----------ggagagcattag--------actgaaga
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154449041 45 - 158406734 ---CTTCTA-----------Agctgaaata--gctcagttg----------ggggagtgttac--------actgaaga
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       309481 45 -   2086007 ---CTTCTA-----------Agctgaaata--gctcagctg----------ggagagtgttag--------actgaaga
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       371641 45 +   3831555 ---CTTCTA-----------Agctgaaata--gctcagttg----------ggagagtgttag--------actgaaga
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59935220 79 -  91889043 ATTTTTCTCTTTGTAGAATGAATTGAGATAGTGTCCATTTGAAAATACACTGGAAAACATTAGTATATTTTTTTGGGTA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e otoGar3.GL873689             357229  0 +   3845361 C
e nomLeu3.chr6               70944258 1167 + 121039945 M
e colAng1.NW_012115278v1       413698 783 -   4457520 I
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=36245.000000
s hg38.chr15_KI270851v1_alt    161787 9 +    263054 AAGTAtttc
s panTro5.chr15              73734428 9 -  83230942 AAGTAtttc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037983 9 -  99763055 AAGTAtttc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86854 9 -    281578 AAGTAtttc
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164249353 9 - 169600520 AAGTATTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570174 9 - 171882078 AAGTATTTC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       385773 9 +   4116138 AAGTATTTC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816871 9 +  58131712 AAGTATTTC
i chlSab2.chr26             C 0 C 0
s calJac3.chr6              154449086 9 - 158406734 CACTATTTC
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       309526 9 -   2086007 CACTATTTC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       371686 9 +   3831555 CACTATTTC
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59935299 9 -  91889043 TAGCATGTA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e otoGar3.GL873689             357229 0 +   3845361 C
e nomLeu3.chr6               70944258 1167 + 121039945 M
e colAng1.NW_012115278v1       413698 783 -   4457520 I
e manLeu1.NW_012102332v1       432327 0 -   3636681 C
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=6265.000000
s hg38.chr15_KI270851v1_alt    161796 9 +    263054 ----ttcttcttt
s panTro5.chr15              73734437 9 -  83230942 ----ttcttcttc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037992 6 -  99763055 ----ttcttc---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86863 9 -    281578 ----ttcttcttc
i gorGor5.CYUI01000141v1    C 0 I 2
s cebCap1.NW_016107707v1       309535 9 -   2086007 ----TTCTTCTTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       371695 9 +   3831555 ----TTCTTCTTT
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59935308 9 -  91889043 ATAGTTTTT----
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e otoGar3.GL873689             357229 0 +   3845361 C
e nomLeu3.chr6               70944258 1167 + 121039945 M
e colAng1.NW_012115278v1       413698 783 -   4457520 I
e manLeu1.NW_012102332v1       432327 0 -   3636681 C
e cerAty1.NW_012001462v1       385782 0 +   4116138 C
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e rheMac8.chr7              164249362 0 - 169600520 C
e chlSab2.chr26              53816880 0 +  58131712 C
e saiBol1.JH378292             283942 1872 -   2682657 M
e calJac3.chr6              154449095 0 - 158406734 C
e macFas5.chr7              165570183 0 - 171882078 C

a score=910.000000
s hg38.chr15_KI270851v1_alt    161805 1 +    263054 t
s panTro5.chr15              73734446 1 -  83230942 t
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86874 1 -    281578 t
i gorGor5.CYUI01000141v1    I 2 C 0
s cebCap1.NW_016107707v1       309544 1 -   2086007 T
i cebCap1.NW_016107707v1    C 0 I 11
s canFam3.chr3               59935317 1 -  91889043 T
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e aotNan1.NW_018503298v1       371704 0 +   3831555 C
e otoGar3.GL873689             357229 0 +   3845361 C
e nomLeu3.chr6               70944258 1167 + 121039945 M
e panPan2.chr15              74037998 0 -  99763055 C
e colAng1.NW_012115278v1       413698 783 -   4457520 I
e manLeu1.NW_012102332v1       432327 0 -   3636681 C
e cerAty1.NW_012001462v1       385782 0 +   4116138 C
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e rheMac8.chr7              164249362 0 - 169600520 C
e chlSab2.chr26              53816880 0 +  58131712 C
e saiBol1.JH378292             283942 1872 -   2682657 M
e calJac3.chr6              154449095 0 - 158406734 C
e macFas5.chr7              165570183 0 - 171882078 C

a score=3640.000000
s hg38.chr15_KI270851v1_alt    161806 4 +    263054 tttt
s panTro5.chr15              73734447 4 -  83230942 tttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74037998 4 -  99763055 tttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86875 4 -    281578 tttt
i gorGor5.CYUI01000141v1    C 0 C 0
s canFam3.chr3               59935318 4 -  91889043 TTTT
i canFam3.chr3              C 0 I 721
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e aotNan1.NW_018503298v1       371704 0 +   3831555 C
e otoGar3.GL873689             357229 0 +   3845361 C
e cebCap1.NW_016107707v1       309545 11 -   2086007 I
e nomLeu3.chr6               70944258 1167 + 121039945 M
e colAng1.NW_012115278v1       413698 783 -   4457520 I
e manLeu1.NW_012102332v1       432327 0 -   3636681 C
e cerAty1.NW_012001462v1       385782 0 +   4116138 C
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e rheMac8.chr7              164249362 0 - 169600520 C
e chlSab2.chr26              53816880 0 +  58131712 C
e saiBol1.JH378292             283942 1872 -   2682657 M
e calJac3.chr6              154449095 0 - 158406734 C
e macFas5.chr7              165570183 0 - 171882078 C

a score=156063.000000
s hg38.chr15_KI270851v1_alt    161810 288 +    263054 tttttttgggaaggagtcttgctctgtcgctgaggctggagtgcagtggcgcgatctcagctcactgcaagctccacctcctgggttcatgccattctcctgcctcagcctcccaagtagctgggactacaggtgtccaccaccacgcccggctaattttttgtattttttagtagagacagggtttcaccgtgttagccaggatggtctcaatctcctgacctcgtgatccgcccgcctcagcctcccaaagtgctgggattataggcgtgagccaccgtgcctggc
s panTro5.chr15              73734451 288 -  83230942 tttttgggggaaggagtcttgctctgttgctgaggctggagtgcagtggcgcgatctcagctcactgcaagctccacctcccgggttcatgccattctcctgcctcagcctcccaagtaggtgggactacaggcgcccgccaccacgcccggctaattttttgtattttttagtagagacagggtttcaccgtgttaaccaggatggtctcaatctcctgacctcgtgatccgcccgcctcagcctcccaaagtgctgggattataggcgtgagccaccgtgcctggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74038002 288 -  99763055 ttttggggggaaggagtcttgctctgttgctgaggctggagtgcagtggcgcgatctcagctcactgcaagctccacctcccgggttcatgccattctcctgcctcagcctcccaagtaggtgggactacaggcgcccgccaccacgcccggctaattttttgtattttttagtagagacagggtttcaccgtgttagccaggatggtctcaatctcctgacctcgtgatccgcctgcctcagcctcccaaagtgctgggattataggcgtgagccactgtgcctggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        86879 288 -    281578 tttttttgagatggagtcttgctctgtcgctgaggctggagtgcagtggcgcgatctcagctcactgcaagctccacctcctgggttcgtgccattctcctgcctcagcctcccaagtagctgggacttcaggcgcccgccaccacgcccggctaattttttgtattttttagtagagacagggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatctgcccgcctcagcctcccaaagcgctgggattgtaggcgtgagccaccgtgcctggc
i gorGor5.CYUI01000141v1    C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e aotNan1.NW_018503298v1       371704   0 +   3831555 C
e otoGar3.GL873689             357229   0 +   3845361 C
e cebCap1.NW_016107707v1       309545  11 -   2086007 I
e nomLeu3.chr6               70944258 1167 + 121039945 M
e colAng1.NW_012115278v1       413698 783 -   4457520 I
e manLeu1.NW_012102332v1       432327   0 -   3636681 C
e cerAty1.NW_012001462v1       385782   0 +   4116138 C
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e rheMac8.chr7              164249362   0 - 169600520 C
e chlSab2.chr26              53816880   0 +  58131712 C
e saiBol1.JH378292             283942 1872 -   2682657 M
e calJac3.chr6              154449095   0 - 158406734 C
e macFas5.chr7              165570183   0 - 171882078 C

a score=11485.000000
s hg38.chr15_KI270851v1_alt    162098 9 +    263054 AAGTATTTA
s panTro5.chr15              73734739 9 -  83230942 AAGTATTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74038290 9 -  99763055 AAGTATTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        87167 9 -    281578 AAGTATTTC
i gorGor5.CYUI01000141v1    C 0 C 0
s manLeu1.NW_012102332v1       432327 9 -   3636681 AAGTATTTC
i manLeu1.NW_012102332v1    C 0 C 0
s otoGar3.GL873689             357229 9 +   3845361 AAGTATTTC
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e aotNan1.NW_018503298v1       371704 0 +   3831555 C
e cebCap1.NW_016107707v1       309545 11 -   2086007 I
e nomLeu3.chr6               70944258 1167 + 121039945 M
e colAng1.NW_012115278v1       413698 783 -   4457520 I
e cerAty1.NW_012001462v1       385782 0 +   4116138 C
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e rheMac8.chr7              164249362 0 - 169600520 C
e chlSab2.chr26              53816880 0 +  58131712 C
e saiBol1.JH378292             283942 1872 -   2682657 M
e calJac3.chr6              154449095 0 - 158406734 C
e macFas5.chr7              165570183 0 - 171882078 C

a score=43595.000000
s hg38.chr15_KI270851v1_alt    162107 9 +    263054 TTCTTCTTT
s panTro5.chr15              73734748 9 -  83230942 TTCTTCTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74038299 9 -  99763055 TTCTTCTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        87176 9 -    281578 TTCTTCTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164249362 9 - 169600520 TTCTTCTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570183 9 - 171882078 TTCTTCTTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       385782 9 +   4116138 TTCTTCTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816880 9 +  58131712 TTCTTCTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       432336 9 -   3636681 TTCTTCTTT
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154449095 9 - 158406734 TTCTTCTTT
i calJac3.chr6              C 0 C 0
s otoGar3.GL873689             357238 9 +   3845361 CTCTTCTCT
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e aotNan1.NW_018503298v1       371704 0 +   3831555 C
e cebCap1.NW_016107707v1       309545 11 -   2086007 I
e nomLeu3.chr6               70944258 1167 + 121039945 M
e colAng1.NW_012115278v1       413698 783 -   4457520 I
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=65747.000000
s hg38.chr15_KI270851v1_alt    162116 12 +    263054 -TGTGGAATGAAT
s panTro5.chr15              73734757 12 -  83230942 -TGTGGAATGAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74038308 12 -  99763055 -TGTGGAATGAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        87185 12 -    281578 -TGTGGAATGAAT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164249371 12 - 169600520 -TGTAGAATGAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570192 12 - 171882078 -TGTAGAATGAAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       385791 12 +   4116138 -TGTAGAATGAAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816889 12 +  58131712 -TGTAGAATGAAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       432345 12 -   3636681 -TGTAGAATGAAT
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154449104 12 - 158406734 -TGTGGAATGAAT
i calJac3.chr6              C 0 C 0
s aotNan1.NW_018503298v1       371704 12 +   3831555 -TGTGGAATGAAT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             357247 13 +   3845361 TCTTGGAATGAAT
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e cebCap1.NW_016107707v1       309545 11 -   2086007 I
e nomLeu3.chr6               70944258 1167 + 121039945 M
e colAng1.NW_012115278v1       413698 783 -   4457520 I
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=170973.000000
s hg38.chr15_KI270851v1_alt    162128 27 +    263054 TGGGATGGTGTCCACTTGAAAATACTT
s panTro5.chr15              73734769 27 -  83230942 TGGGATGGTGTCCACTTGAAAATACAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74038320 27 -  99763055 TGGGATGGTGTCCACTTGAAAATACAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        87197 27 -    281578 TGGGATGGTGTCCACTTGAAAATACAT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164249383 27 - 169600520 TGGTATAGTGTCCACTTGAAAATACAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570204 27 - 171882078 TGGTATAGTGTCCACTTGAAAATACAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       385803 27 +   4116138 TGGGATAGTGTCCACTTGAAAATACAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816901 27 +  58131712 TGGGATAGTGTCCACTTGAAAATACAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       432357 27 -   3636681 TGGGATAGTGTCCACTTGAAAATACAT
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154449116 27 - 158406734 TGGGATAGCATCCGCTTGAAAACATAT
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       309556 27 -   2086007 TGGGATAGTGTCCACGTGAAAATACCT
i cebCap1.NW_016107707v1    I 11 C 0
s aotNan1.NW_018503298v1       371716 27 +   3831555 TGGGATAGTGTCCACTTGAAAATACAT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             357260 27 +   3845361 TGGGATAGTGTGCACTTGAAAACACAT
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e nomLeu3.chr6               70944258 1167 + 121039945 M
e colAng1.NW_012115278v1       413698 783 -   4457520 I
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=445171.000000
s hg38.chr15_KI270851v1_alt    162155 81 +    263054 GGGgaccgggcgcggtggatcgtgcctgtaattccagcactttgggaggctgaggcgggcagatcatttgaggttgggagt
s panTro5.chr15              73734796 81 -  83230942 GGGGATcgggcgtggtggatcatgcctgtaattccagcactttgggaggctgaggcaggcagatcatttgaggttgggagt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74038347 81 -  99763055 GGGGATcgggcgtggtggatcatgcctgtaattccggcactttgggaggctgaggcaggcagatcatttgaggttgggagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        87224 81 -    281578 GGGgaccgggcgtggtggatcatgcctgtaattccagcactttgggaggctgaggcgggcagatcatttgaggttgggagt
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164249410 81 - 169600520 GGGgaccgggtgcggtggatcatgcctgtaattccagcactttgggaggctgaggcaggcagatcatttgaggttgggagt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570231 81 - 171882078 GGGgaccgggtgcggtggatcatgcctgtaattccagcactttgggaggctgaggcaggcagatcatttgaggttgggagt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       385830 81 +   4116138 GGGgaccgggtgcggtggatcatgcctgtaattccagcactttgggaggctgaggcaggcagatcatttgaggttgggagt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53816928 81 +  58131712 GGGgactgggtgcggtggatcatgcctgtaattccagcactttgggaggctgaggcaggcagatcatttgaggttgggagt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       432384 81 -   3636681 GGGgaccgggtgcggtggatcatgcctgtaattccagcacttagggaggctgaggcaggcagatcatttgaggttggaagt
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154449143 81 - 158406734 GGGggctggccgtagtggatcatgcctataatctcagcaatatgggaggctaaggcgggcagatcatttgaggttgggagt
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       309583 81 -   2086007 GGGggctggctgtagtggatcatgcctataatctcagcaatgtgggaggctgaggcgggcagatcatttgaggttgggagt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       371743 81 +   3831555 GGGggctggctgtagtggatcatgcatataatctcagcaatgtgggaggctgaggtgggcagatgatttgaggttgggagt
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e otoGar3.GL873689             357287  0 +   3845361 C
e nomLeu3.chr6               70944258 1167 + 121039945 M
e colAng1.NW_012115278v1       413698 783 -   4457520 I
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=71262.000000
s hg38.chr15_KI270851v1_alt    162236 11 +    263054 ttgagaccagc
s panTro5.chr15              73734877 11 -  83230942 ttgagaccagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74038428 11 -  99763055 ttgagaccagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        87305 11 -    281578 ttgagaccagc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70945425 11 + 121039945 ttgagactagc
i nomLeu3.chr6              M 1167 C 0
s rheMac8.chr7              164249491 11 - 169600520 ttgagaccagc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570312 11 - 171882078 ttgagaccagc
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       385911 11 +   4116138 ttgagaccagc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53817009 11 +  58131712 ttgagaccagc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       432465 11 -   3636681 ctgagaccagc
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154449224 11 - 158406734 tagagaccagc
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       309664 11 -   2086007 tagagaccagc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       371824 11 +   3831555 taaagaccagc
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e otoGar3.GL873689             357287  0 +   3845361 C
e colAng1.NW_012115278v1       413698 783 -   4457520 I
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=1549273.000000
s hg38.chr15_KI270851v1_alt    162247 230 +    263054 ctggccaacatggtgaaaccccgtctctactaaaaaatacaaaaattagccaggcatagtggcgggcgcctgtaatcccagctacttgggagggcacggcaggagaattgcttggagccgggaggtggaggttgcagtgagcagatattgtgctactgcactccagcctgggtgac-agagtgagactccatctcaaaaaaa---aaaaaacaaaaaacacaaaaCAAA-------CCATG
s panTro5.chr15              73734888 231 -  83230942 ctggccaacatggtgaaaccccgtctctactaaaaaatacaaaaattagccaggcatagtggcgggcacctgtaatcccagctacttgggagggcacggcaggagaattgcttggagccgggaggtggaggttgcagtgagcagatattgtgctactgcactccagcctgggtgac-agagtgagactccatctcaaaaaaa--caaaaaacaaaaaacacaaaacaaa-------CCATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74038439 231 -  99763055 ctggccaacatggtgaaaccccgtctctactaaaaaatacaaaaattagccaggcatagtggcgggcacctgtaatcccagctacttgggagggcacggcaggagaattgcttggagccgggaggtggaggttgcagtgagcagatattgtgctactgcactccagcctgggtgac-agagtgagactccatctcaaaaaaa--caaaaaacaaaaaacacaaaacaaa-------CCATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        87316 233 -    281578 ctggccaacatggtgaaaccccgtctctactaaaaaatacaaaaattagccaggcatagtggtgggcacctgtaatcccagctacttgggagggcacggcaggagaattgcttggagccgggaggtggaggttgcagtgagcagatattgtgctactgcactccagcctgggtgac-agagtgagactccatctcaaaaaaaaaaaaaaaacaaaaaacacaaaaCAAA-------CCATG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70945436 224 + 121039945 ctggccaacatggtgaaaccccatctctactaaaaaatacaaaaattagtcaggcgtagtggtgggcgcctgtaatcccagctacttgggagggcaaggcaggagaattgcttgaagccaggaggtggaggttgcactgagcagatattgtgctcctgcactccagcctgggcgac-agagtgagactccgtctcaaaaaaa---------caaaaaacacaaaacaaa-------CCATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164249502 217 - 169600520 ctggccaacatggtgaaaccccgtctatactaaaaaatacaaaaattagccaggcatggtggcgggcgcctgtaatcccagcttcttgggaggccaaggcaggagaattgcttgaacccaggaggtggaggttgcagtgagctgagattgtgttactgcactccagcctgggtgac-agagtgagactgcatctaaaaaaaa----------------accaaaacaaa-------CCATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570323 217 - 171882078 ctggccaacatggtgaaaccccgtctatactaaaaaatacaaaaattagccaggcatggtggcgggcgcctgtaatcccagcttcttgggaggccaaggcaggagaattgcttgaacccaggaggtggaggttgcagtgagctgagattgtgttactgcactccagcctgggtgac-agagtgagactgcatctaaaaaaaa----------------aacaaaacaaa-------CCATG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       385922 216 +   4116138 ctggccaacatggtgaaaccccgtctatactaaaaaatacaaaaattagccaggcatggtggcgggcgcctgtaatcccagcttcttgggaggccaaggcaggagaattgcttgaacccaggaggtggaggttgcagtgagctgagattgtgttactgcactccagcctgagtgac-agagtgagactgcatct-aaaaaaa----------------accaaaacaaa-------CCATG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53817020 217 +  58131712 ctggccaacatggtgaaaccccgtctatactaaaatatacaaatattagccaggcatggtggcgggcgcctgtaatcccagcttcttgggaggccaaggcaggagaattgcttgaacccaggaggtggaggttgcagtgagctgagattgtgttactgcattccagcctgggtgac-agagtgagactgcatctaaaaaaaa----------------accaaaacaaa-------CCATG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       432476 217 -   3636681 ctggccaacatggtgaaaccccgtctatactaaaaaatacaaaaattagccaggcatggtggcgggcgcctgtaatcccagcttcttgggaggccaaggcaggagaattgcttgaacccaggaggtggaggttgcagtgagctgagattgtgttactgcactccagcctgggtgac-agagtgagactgcatctaaaaaaaa----------------accaaaacaaa-------CCATG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       414481 217 -   4457520 ctggccaacatggtgaaaccccatctctactaaaaaatacaaaaattagccaggcatggtggcgggcgcctgtaatcctagcttcttgggaggccaaggcaggagaattgcttgaacccaggaggtggaagttgcagtgagctgagattgtgttactgcactccagcctgggtgac-ggagtgagactacatctaaaaaaaa----------------accaaaacaaa-------CCATG
i colAng1.NW_012115278v1    I 783 C 0
s calJac3.chr6              154449235 221 - 158406734 ctggccaatacagtgaaaccccatctgtacta-aaaatacaaaaattagccaggcatggtggtggatgcctgtaatcccaggttcttgggtggctgagacaggagaattgcttgaacccgggaggtggaggttacagtgagctgagattatgccactgcattccagcctgggcgacaagagtgagactgcatctcaaaaaca-------------------aaaacaaacaaaaGTCCATG
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       309675 221 -   2086007 ctggccaatatgatgaaaccccatctctactacaaaatacaaaaattagccaggcatggtggtggatgcctgtaatcctaggtacatgggaggctgagacaggagaattgcttgaacccaggaggtggaggttgcagtgagctgagattatgccactgcactgcagcctgggcgac-agagtgagactccatctcaaaaaca-------------------aaaacaaaCGAAAGTCCATG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       371835 220 +   3831555 ctggccaatatggtgaaaccccatctctacta-aaaatacaaaaattagccaggcatggtggtggatgcctgtaatcccaagtacttgggaggctgagacaggagaattgcttgaacccaggaggtggaggttgcagtgagccgagattatgccgctgcactccagcctgggcgac-agagtgagactccatctcaaaaaca-------------------aaaacaaacaaaaGTCCATG
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e otoGar3.GL873689             357287   0 +   3845361 C
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=357968.000000
s hg38.chr15_KI270851v1_alt    162477 53 +    263054 GGAAAAAGTATTAGTCTCCCTCTTCAGTTTCAGTGTCAAGCAGAGTTACCT--GT
s panTro5.chr15              73735119 53 -  83230942 GGAAAAAGTATTAGTCTCCCTTTTCAGTTTCAGTGTCAAGCAGAGTTACCT--GT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74038670 53 -  99763055 GGAAAAAGTATTAGTCTCCCTTTTCAGTTTCAGTGTCAAGCAGAGTTACCT--GT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        87549 53 -    281578 GGAAAAAGTATTAGTCTCCCTTTTCAGTTTCAGTGTCAAGCAGAGTTACCT--GT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70945660 53 + 121039945 GGAAAAAGTATTAGTCTCCCTTTTCAGTTTCAATGGCAAGCAGAGTTACCC--GT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164249719 48 - 169600520 GGAAAAAGTATTAGTCTCCCTTTTCAGTTTCAGTGTCAAGC--AGTTACC-----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570540 48 - 171882078 GGAAAAAGTATTAGTCTCCCTTTTCAGTTTCAGTGTCAAGC--AGTTACC-----
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       386138 51 +   4116138 GGAAAAAGTATTAGTTTCCCTTTTCAGTTTCAGTGTCAAGC--AGTTACCT--Gt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53817237 51 +  58131712 GGAAAAAGTATTAGTCTCCCTTTTCAGTTTCAGTGTCAAGC--AGTTACCC--GT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       432693 49 -   3636681 GGAAAAAGTATTAGTCTCCCTTTTCAGTTTCAGTGTCAAGC--AGTTACCC----
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       414698 48 -   4457520 GGAAAAAGTATTAGTCTCCCTATTCAGTTTCAGTGTCAAGC--AGTTACC-----
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154449456 50 - 158406734 GGAAAAA-TATTAGTCTCCCTTTTCAGTTTCAATGTCAAGCAGAGTTACCC----
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       309896 51 -   2086007 GAAAAAAGTATTAGTCTCCCTTTTCAGCTTCAATGTCAAGCAGAGTTACCC----
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       372055 53 +   3831555 GGAAAAAGTATTAGTCTCCCTTTTCAGTTTCAATGTCAAGCAGAGTTACCCTT--
i aotNan1.NW_018503298v1    C 0 I 8
s otoGar3.GL873689             357287 51 +   3845361 GGAAAACATAATAGTGTGTCTATTCAGTTACAGCATCTAGC--AGTTATTT--CT
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=6370.000000
s hg38.chr15_KI270851v1_alt    162530 23 +    263054 GTtttta-ttttaatttatttttt
s panTro5.chr15              73735172 18 -  83230942 GTTTTTA------ATTTATTTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74038723 18 -  99763055 GTTTTTA------ATTTATTTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        87602 18 -    281578 GTTTTTA------ATTTATTTTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70945713 24 + 121039945 Gtttttttttttaatttatttttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164249767 15 - 169600520 CTTTTTT--------TTTTTTTT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570588 16 - 171882078 CTTTTTT--------TTTTTTTTA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       386189 16 +   4116138 ttttttt--------tttttttta
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53817288 16 +  58131712 GTTTTTT--------TTTTTTTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       432742 16 -   3636681 GTTTTTT--------TTTTTTTTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       414746 16 -   4457520 CGTGGTT--------TTTTTTTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154449506  6 - 158406734 ------------------TTTTAA
i calJac3.chr6              C 0 I 4
s cebCap1.NW_016107707v1       309947  6 -   2086007 ------------------TTTTTA
i cebCap1.NW_016107707v1    C 0 I 4
s otoGar3.GL873689             357338  4 +   3845361 -----------------GTTT---
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e aotNan1.NW_018503298v1       372108  8 +   3831555 I
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=478062.000000
s hg38.chr15_KI270851v1_alt    162553 111 +    263054 atatttGTTTGAAAATATTcacacacacacacacacacacaca--------------cacacacaATAACTGACAGA-CGTGTACAGTGAGTGGCTGCAGACCCACCTCCA----TGTTCTG----CCACCGTA
s panTro5.chr15              73735190 103 -  83230942 ATATTTGTTTGAAAATATTcacacacacacacacacacacaca----------------------ATAACTGACAGA-CGTGTACAGTGAGTGGCTGCAGACCCACCTCCA----TGTTCTG----CCACCGTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74038741 101 -  99763055 ATATTTGTTTGAAAATATTcacacacacacacacacacaca------------------------ATAACTGACAGA-CGTGTACAGTGAGTGGCTGCAGACCCACCTCCA----TGTTCTG----CCACCGTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        87620  99 -    281578 ATATTTGTTTGAAAATATTcacacacacacacacacaca--------------------------ATAAATGACAGA-CGTGTACAGTGAGTGGCTGCAGACCCACCTCCA----TGTTCTG----CCACCGTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70945737 125 + 121039945 atatttgtttGAAAATATTCTcacacacacacacacacacacacacacacacacacacacacacaATAACTGACAGA-TGTGTACAGTGAGTGGCTGCGGACCCACCCCTG----TGTTCTG----CCACCATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164249782  69 - 169600520 ATGTGTGTTTGAAAATATTCACACACACACGCACA------------------------------ATAACTGACAGA-CGTGTACAGTGAGTGGCTGCA----------------------------------G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570604  69 - 171882078 ATGTGTGTTTGAAAATATTCACACACACACGCACA------------------------------ATAACTGACAGA-CGTGTACAGTGAGTGGCTGCA----------------------------------G
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       386205  69 +   4116138 atgtttgtttGAAAATATTCACACACACACGCACA------------------------------ATAACTGACAGA-CGTGTACAGTGAGTGGCTGCG----------------------------------G
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53817304  94 +  58131712 ACGTTTGTTTGAAAATATTCACACACACACGCACA------------------------------ATAACTGACAGA-CGTGTACAGTGAGTGGCTGCAGACTCACCCCCA----TGTTCT-----CCACCGTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       432758  69 -   3636681 ATGTTTGTTTGAAAATATTCACACACACACGCACA------------------------------ATAACTGACAGA-CGTGTACAGTGAGTGGCTGCG----------------------------------G
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       414762  94 -   4457520 ATGTTTGTTTGAAAATATTCACACACACATGCACA------------------------------ATAACTGACAGA-CGTGTACAGTGAGTGGCTGCAGACTCACCCCTA----TGTTCT-----CCACCGTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154449516  94 - 158406734 ATATTTGTTTGAAAATGTTAACACTTACACACA--------------------------------GTAGCTGAAAGACCGTGTGCAGTGAATGACTGCAGACCCACCCCAG----TGTTCTG----CCACTGCG
i calJac3.chr6              I 4 C 0
s cebCap1.NW_016107707v1       309957  97 -   2086007 ATATTTGTTTGAAAATATTAACACTTACGCACA--------------------------------GTAGCTGAAAGA-CGTGTGCAGTGAGTGGCTGCAGACCCACCCCCGCTCATGTTCTG----CCACTACG
i cebCap1.NW_016107707v1    I 4 C 0
s aotNan1.NW_018503298v1       372116  91 +   3831555 ATATTTGTTTGAAAATATTAACAC--ACACACA--------------------------------TTAGCTGAAAGA-CGTGTGCAGTGAGTGGCTGCAGACCCACCCCCG----TGTTCTG----CCACTGCG
i aotNan1.NW_018503298v1    I 8 C 0
s otoGar3.GL873689             357342  95 +   3845361 -TGtttgtttgaaaattttcacacatgcacaga--------------------------------atagctgaaaga-ccag-acagtgggctgccacacatccaccCCAG----TCCTTTGGCTTCCCCCTTG
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e macNem1.NW_012011934v1       418775 755 +   2379783 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=986112.000000
s hg38.chr15_KI270851v1_alt    162664 123 +    263054 ----------TTTGGCTCCACATCCTGCTGTCTGTCCATCCACCGTTTG-TCTCACC-TAGctc-cttagacact-catgtatgtaat-tgattctagttcaactt--tgtttttgactttcaggtaaaatttatatata
s panTro5.chr15              73735293 123 -  83230942 ----------TTTGGCTCCACATCCTGCTGTCTGTCCATCCACCGTTTG-TCTCACC-TAGctc-cttagacact-catgtatataat-tgattctagttcaactt--tgtttttgactttcaggtaaaatttatatata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74038842 123 -  99763055 ----------TTTGGCTCCACATCCTGCTGTCTGTCCATCCACCGTTTG-TCTCACC-TAGctc-cttagacact-catgtatgtaat-taattctagttcaactt--tgtttttgactttcaggtaaaatttatatata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        87719 123 -    281578 ----------TTTGGCTCCACATCCTGCTGTCTGTCCATCCACCGTTTG-TCTCACC-TAGctc-cctagacact-catgtatgtaat-tgattctagttcaactt--tgtttttgactttcaggtaaaatttatatata
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70945862 124 + 121039945 ----------TTTGGCTCCATATCCTGCTGTCTGTCCATCCACTGTTTGTTTTCACC-TAGctc-cttagacact-catgtatgtaat-tgattctagttcaactt--tgtttttgactttcaggtaaaatttatatata
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164249851 125 - 169600520 ----------TTTGGCTCCACATCCTGCCGTCTGTCCATCCACTGTTTG-TCTCACC-TAGctc-cttagacact-catgtatgtaat-tgattttagttaaactttatgtttttgactttcaggtaaaatttatatata
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570673 125 - 171882078 ----------TTTGGCTCCACATCCTGCCGTCTGTCCATCCACTGTTTG-TCTCACC-TAGctc-cttagacact-catgtatgtaat-tgattttagttaaactttatgtttttgactttcaggtaaaatttatatata
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       419530 121 +   2379783 ----------TTTGGCTCCACATCCTGCCGTCTG-CCATCCACTGTTT----TCACCGTAGCTC-C-TAGAC-CT-CATGTATGTAATATGATTTTAGTTAAACtttatgtttttgactttcaggtaaaatctatatata
i macNem1.NW_012011934v1    I 755 I 18
s cerAty1.NW_012001462v1       386274 125 +   4116138 ----------TTTGGCTCCACATCCTGCCGTCTGTCCATCCACTGTTTG-TCTCACC-TAGctc-cttagacact-catgtatgtaat-tgattttagttaaactttatgtttttgactttcaggtaaaatttatatata
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53817398 125 +  58131712 ----------TTTGGCTCCACATCCTGCCGTCTGTCCATCCACTGTTTG-TCTCACC-TAGctc-cttagacact-catgtatgtaat-tgattttagttaaactttatgtttttgactttcaggtaaaatttatatata
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       432827 125 -   3636681 ----------TTTGGCTCCACATCCTGCCGTCTGTCCATCCACTGTTTG-TCTCACC-TAGctc-cttagacact-catgtatgtaat-tgattttagttaaactttatgtttttgactttcaggtaaaatttatatata
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       414856 124 -   4457520 ----------TTTGGCTCCACATCCTG-TGTCTCTCCATCCACTGTTTG-TCTCACC-TAGctc-cttagacact-catgtatgtaat-tgattctagttcaactttatgtttttgactttcaggtagaatttatatata
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154449610 113 - 158406734 ----------TTTGACTCCACATCTTG-------TCCATCCACTG-----TCTCACC-TAGTTc-cttagacact-caagtatgtcat-taattccagttcagctttata-ttttgactttcaggtaaaatttatgtata
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       310054 113 -   2086007 ----------TTTGGCTCCATATCTTG-------TCCATCCATTG-----TCTCGCC-TAGTTc-cttagacact-caagtatgtcat-taattccagttcagctttata-ttttgactttcaggtaaaatttatgtata
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       372207 113 +   3831555 ----------TTTGGCTCCACATCTTG-------TCCATCCACTG-----TCTCACC-TAGTTc-cttagacact-caagtatgtcag-taattccagttcagctttata-ttttgactttcaggtaaaatttatgtata
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             357437 131 +   3845361 GTCACAGGCTCCTGGATCCACATCGTTCCGTCCTTCCATTC-CTGCACAATCTCACC-GGGGTCTCTTCGGCACTCcatatgtatcat-taactcaggtttagttt------tttgtcttataggtaaaatttatgtatg
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=121756.000000
s hg38.chr15_KI270851v1_alt    162787 25 +    263054 atgaaatgtatcta-ttttgagttta
s panTro5.chr15              73735416 25 -  83230942 atgaaatgtatcta-ttttgagttta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74038965 25 -  99763055 atgaaatgtatcta-ttttgagttta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        87842 25 -    281578 atgaaatgtatcta-ttttgagttta
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70945986 25 + 121039945 atgaaatgcatcta-ttttgagttta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164249976 20 - 169600520 atgaaacgcatc------tgagttca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570798 20 - 171882078 atgaaacgcatc------tgagttca
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       386399 20 +   4116138 atgaaacgcatc------tgagttca
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53817523 20 +  58131712 atgaaacgcatc------tgagttca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       432952 20 -   3636681 atgaaacgcatc------tgagttca
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       414980 25 -   4457520 atgaaacgcatcta-ttttgagttca
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154449723 25 - 158406734 atg-aatgcatctgtttttgagttta
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       310167 26 -   2086007 atgaaatgcacctgtttttgagttta
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       372320 26 +   3831555 atgaaatgcatttgtttttgagttta
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             357568 25 +   3845361 atgcaatgaataca-ttttaagtttg
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e macNem1.NW_012011934v1       419651 18 +   2379783 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=263661.000000
s hg38.chr15_KI270851v1_alt    162812 31 +    263054 ccatttcacaagtt-ttgacaaat-gtaacc--cg
s panTro5.chr15              73735441 31 -  83230942 ccatttcacaagtt-ttgacaaat-gtaacc--cg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74038990 31 -  99763055 ccatttcacaagtt-ttgacaaat-gtaacc--cg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        87867 31 -    281578 ccatttcacaagtt-ttgacaaat-gtaacc--cg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70946011 31 + 121039945 ccatttcacaagtt-ttgacaaat-gtaacc--tg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164249996 31 - 169600520 ccatttcacaagtt-ttgacaaat-gtaacc--tg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570818 31 - 171882078 ccatttcacaagtt-ttgacaaat-gtaacc--tg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       419669 33 +   2379783 ccatttcacaagttcttgacaaatggtaacc--tg
i macNem1.NW_012011934v1    I 18 C 0
s cerAty1.NW_012001462v1       386419 31 +   4116138 ccatttcacaagtt-ttgacaaat-gtaacc--tg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53817543 31 +  58131712 ccatttcacaagtt-ttgacaaat-gtaacc--tg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       432972 31 -   3636681 ccatttcacaagtt-ttgacaaat-gtaacc--tg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       415005 33 -   4457520 ccatttcacaagtt-ttgacaaat-gtaacctgtg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154449748 31 - 158406734 ccatttcacaagtt-ttcataaac-gtaacc--tg
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       310193 30 -   2086007 ccatttcacaagtt-ttgataaat-gtaacc--g-
i cebCap1.NW_016107707v1    C 0 T 2652
s aotNan1.NW_018503298v1       372346 29 +   3831555 cc-tttcacaa-tt-ttgataaat-gtaacc--tg
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             357593 29 +   3845361 ccatcccatgagtg-ttgaaaaag-gtaacc----
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=1689444.000000
s hg38.chr15_KI270851v1_alt    162843 211 +    263054 tgtaacccacatctttatcatgact-cttgctcagaaagttctctggtgtc-----ctgccccttcttcccagaggcaatagctggcctgatgtttctccagcattgacaaattgcgcctgttcta-gaactcc-atacatggaatcatgtagtcgggttcttctgtgtcttggcttctttc-actctgtttagtgcttttgattttcatG-------TTTTTT--TTT
s panTro5.chr15              73735472 208 -  83230942 tgtaacccacatctttatcatgagt-cttgctcagaaagttctctggtgtc-----ctgccccttcttcccagaggcgatagctggcctgatgtttctccagcattgacaaattgcgcctgttcta-gaactcc-atacatggaatcatgtagtcgggttcttctgtgtct-ggcttctttc-actctgtttagtgcttttgattttcat---------cTTTT--TTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74039021 207 -  99763055 tgtaacccacatctttatcatgagt-cttgctcagaaagttctctggtgtc-----ctgccccttcttcccagaggcaatagctggcctgatgtttctccagcattgacaaattgcgcctgttcta-gaactgc-atacatggaatcatgtagtcgggttcttctgtgtct-ggcttctttc-actctgtttagtgcttttgattttcat----------cTTT--TTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        87898 210 -    281578 tgtaacccacatctttatcatgacg-cttgctcagaaagttctctggtgtc-----ctgccccttcttcccagaggcaatagctggcctgatgtttctccagcattgacaaattgcgcctgttcta-gaactcc-atacatggaatcatgtagtcgggttcttctgtgtct-gacttctttc-actctgtttagtgcttttgattttcatc-------TTTTTT--TTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70946042 210 + 121039945 tgtaacccacatctttatcatgact-cttgctcagaaagttctctggtgtc-----ctgccccttcttcccagaggcagtagctggcctgatgtttctccagcattgacaaattgcacctgttcta-gaactcc-ataaatggaatcatgtagtcaggttcttctgtgtct-ggcttctttctactttgtgtagtgcttttgattttcat--------cTTTTT--TTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164250027 214 - 169600520 tgtaacccacatctttatcatgact-cttgctcagaaagttctctcgtgtc-----ctgccccttcttcccagagtcaataactggtctgatgtttctctagcattgacagattgtgccagttcta-gaactcc-ataaattgaatcatgtagtcaggttcttctgtgtct-ggcttctttc-actctgcatagtgcttttgattttcatc---tttttttttt--ttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165570849 211 - 171882078 tgtaacccacatctttatcatgact-cttgctcagaaagttctctcgtgtc-----ctgccccttcttcccagagtcaataactggtctgatgtttctctagcattgacagattgtgccagttcta-gaactcc-ataaattgaatcatgtagtcaggttcttctgtgtct-ggcttctttc-actctgcatagtgcttttgattttcatc------TTTTTTT--TTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       419702 202 +   2379783 tgtaacccacatctttatcatgactccttgctcagaaagtttcctc-tgtc-----ctgccccttcttccca-agtcaataactgct-tgatgttcctctagcattgacagattgtgccagttctatgaactcc-ataaa-tgaatcatgtagtcaggt--ctctgtgtct-gg-ttctttc-actctgcatagtgctttga--tttcatc--------TTTTT--TTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       386450 212 +   4116138 tgtaacccacatctttatcatgact-cttgctcagaaagttctctcgtgtc-----ctgccccttcttcccagagtcagtaactggtctgatgtttctctagcattgacagattgtgccagttcta-gaactcc-ataaattgaatcatgtagtcaggttcttctgtgtct-ggcttctttc-actctgcatagtgcttttgattttcatc-----TTTTTTTT--TTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53817574 217 +  58131712 tgtaacccacatctttatcatgact-cttgctcagaaagttctctcgtgtc-----ctgccccttcttcccagagtcagtaactggtctgatgtttctctagcattgacagattgtgccagttcta-gaactcc-ataaattgaatcatgtagtcaggttcttctgtgtct-ggcttctttc-actctgcatagtgcttttgattttcatctttgtttttTTTT--TTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       433003 210 -   3636681 tgtaacccacatctttatcatgact-cttgctcagaaagttctctcgtgtc-----ctgccccttcttcccagagtcaataactggtctgatgtttctctagcattgacagattgtgccagttcta-gaactcc-ataaattgaatcatgtagtcaggttcttctgtgtct-ggcttctttc-actctgcatagtgcttttgattttcatc-------TTTTTT--TTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       415038 208 -   4457520 tgtaacccacatctttatcatgact-cttgctcggaaagttctctcgtgtc-----ctgccccttcttcccagagtcaataactggtctgatgtttctctaacattgacagattgtgccggttcta-gaactcc-ataaattgaatcatgtagtcaggttcttctgtgtct-gacttctttc-actctgcatagtgcttttgattttcatc---------TTTT--TTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154449779 211 - 158406734 tgtaaaccacatctttatcgtgact-cgtg-ttagaaacttctgttgtgtc-----ctgccccttcttcccagaggcaacagctggcctgatctttctccagcattggctaattgtgcctgtttta-gaactcc-ataaatggaatcatgtaggcaggctcttctgtgtgt-gtcgtctttc-actctgcatagtgtttttgatttttacc-------cttttttgttt
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       307571 206 -   2086007 TGTAACCCACATCTTTATCATGACT-CTTGCTTGGAAACTTCTCTTGTGTc-----ctgccc---cttcccagaggcaacagctggcctgatctttctccagcattggctaattgtgcctgtttta-gaactcc-ataaatgg-atcctgtaggcaggctcttctgtgtgt-gtcgtctttc-actctgcacagtgtttttgattttcatc-------cTTCTT--TTT
i cebCap1.NW_016107707v1    T 2652 C 0
s aotNan1.NW_018503298v1       372375 207 +   3831555 tgtaacccacatctttatcatgact-cttgcttagaaacttctcttgtgtc-----ctgccccttcttcccagaggcaacagctggcctgatcttcctccagcattggctaattgtgcctgtttta-gaactcc-ataaatggaatcatgtaggcaggctctgctgtgtgt-gtcgtctttc-actctgcatagtatttttgattttcatc-------cTT-----TTT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             357622 185 +   3845361 --taaacc----tttTATTA------CTCACTTG--AACCTTTTTGGGGTCTATGGctgtccttactgcccagaggcattggctggtctgat------------------agttttgtttgttcta-gaacttctgtgagtggagtcacatagtcacgtgtgctcttgtct-ggctgctttc-atgctgcatgatgcttttgattctcttt-------tctttt--ttt
i otoGar3.GL873689          C 0 I 29
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=638211.000000
s hg38.chr15_KI270851v1_alt    163054 89 +    263054 TTTTAAACAACATAATGGGTTTATATTTAATATAGCACTTCTCATCAGGAGG-TGTTACTCAGTTAATATAAAG-----TTTTTATTAACATTAA
s panTro5.chr15              73735680 89 -  83230942 TTTTAAACAACATAATGGGTTTATATTTAATATAGCACTTCTCATCAGGAGG-TGTTACTCAGTTAATATAAAG-----TTTTTTTTAACATTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74039228 88 -  99763055 TTTTAAACAACATAATGGGTTTATATTTAATATAGCACTTCTCATCAGGAGG-TGTTACTCAGTTAATATAAAG-----TTTTT-TTAACATTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        88108 89 -    281578 TTTAAAACAACATAATGGGTTTATATTTAATATAGCACTTCTCATCAGGAGG-TGTTACTCAGTTAATGTAAAG-----TTTTTTTTAACATTAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70946252 89 + 121039945 TTTTTAACAACATAATGGGTTTATATTTAATATAGCACTTCTCATCAGGAGG-TGTTACTCAGTTAATATAAAG-----TTTTTTTTAACATTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164250241 90 - 169600520 tttttAACAACATAATAGGTTTATATTTAATATAGCACTTCTCATCGGGAGG-TATTACTCAGTTAATATAAAG----TTTTTTTTTAACATTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165571060 90 - 171882078 TTTTTAACAACATAATAGGTTTATATTTAATATAGCACTTCTCATCGGGAGG-TATTACTCAGTTAATATAAAG----TTTTTTTTTAATATTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       419904 83 +   2379783 TTTTTAACACAGTAATAGGTTTATA-TTAATATAGCACTTCTCATCTGGAGG---TTACTCAG-TAATATAAAT----TTTTTTT---ACATTAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       386662 90 +   4116138 TTTTTAACAACATAATAGGTTTATATTTAATATAGCACTTCTCATCGGGAGG-TATTACTCAGTTAATATAAAG----TTTTTTTTTAACATTAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53817791 94 +  58131712 TTTTAAACAACATAATAGGTTTATATTTAATATAGCACTTCTCATTGGGAGG-TATTACTCAGTTAATATAAAGTTTTTTTTTTTTTAACATTAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       433213 88 -   3636681 TTTTAAACAACATAATAGGTTTATATTTAATATAGCACTTCTCATCGGGAGG-TATTACTCAGTTAATATAG------TTTTTTTTTAACATTAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       415246 86 -   4457520 TTTTAAACAACATAATAGGTTTATATTTAATATAGCACTTCTCATAGGGAGG-TATTAC--------TATAAAGTTTTTTATTTTTTAACATTAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154449990 89 - 158406734 tgtttaacaacatagt-agtttatGTTTAACATAGCACTTCTCATCAGGAGGATGTTACTCAGTTAATACAACG-----TTTCTTTTAACATGGA
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       307777 90 -   2086007 TGTTTAACAACATAATGGGTTTATGTTTAATATAGCCCTTCTCATCAGGAGGATATCGCTCAGTTAATACAACG-----TTACTTTTAACATTGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       372582 90 +   3831555 TTTTTAACAACATAATGGGTTTATGTTTAATATAACACTTCTCATCAGGAGGCTATTACTCAGTTAATATAACG-----TTTCTTCTAACATTGA
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e otoGar3.GL873689             357807 29 +   3845361 I
e saiBol1.JH378292             283942 1872 -   2682657 M

a score=869959.000000
s hg38.chr15_KI270851v1_alt    163143  94 +    263054 A-TCTCTTTTCCATGTCAATGTCTATAGTGTTTT-------------TTTTTTCTTTAACATTAAGTCTTTTCTCCATTTCAGTATTAGATACACTGAATACATTTTT
s panTro5.chr15              73735769  94 -  83230942 A-TCTCTTTTCCATGTCAATGTCTGTAGTGTTTT-------------TTTTTTCTTTAACATTAAGTCTTTTCTCCATTTCAGTATTAGATACACTGAATACATTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74039316  92 -  99763055 A-TCTCTTTTCCATGTCAATGTCTGTAGTG--TT-------------TTTTTTCTTTAACATTAAGTCTTTTCTCCATTTCAGTATTAGCTACACTGAATACATTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        88197  94 -    281578 A-TCTCTTTTCCATGTCAATGTCTATAGTGTTTT-------------TTTTTTCTTTAACATTAAGTCTTTTCTCCATTTCAGTATTAGATACACTGAATACATTTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70946341  94 + 121039945 A-TCTCGTTTCCATGTCAATGTCCATAGTGTTTT-------------TTTTTTCTTTAACATTAAGTCTTTTCTCCATTTCAGTATTAGATACACTGAATACATTGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164250331 107 - 169600520 A-TATCTTTTCCATGTCAGTGTCTATAGTGCTTTTTGTTTTGTTTTGTTTTTTCTTTAACATTAAGTCTTTTCTCCATTTCAGTATTAGATACACTGAATACATTTTT
i rheMac8.chr7              C 0 I 18
s macFas5.chr7              165571150 107 - 171882078 A-TATCTTTTCCATGTCAGTGTCTATAGTGCTTTTTGTTTTGTTTTGTTTTTTCTTTAACATTAAGTCTTTTCTCCATTTCAGTATTAGATACACTGAATACATTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       419987 101 +   2379783 ATTATCTTTTCCATGTCAGTGTC-ATA----TCTTTGTGTTTTGTTGTTTTTTCTTTAACATTAAGTC-TTCCTCCATTTCAGTATTAGATACACTG-ATACATTTTT
i macNem1.NW_012011934v1    C 0 T 82126
s cerAty1.NW_012001462v1       386752 107 +   4116138 A-TATCTTTTCCATGTCAGTGTCTATAGTGCTTTTTGTTTTGTTTTGTTTTTTCTTTAACATTAAGTCTTTTCTCCATTTCAGTATTAGATACACTGAATACATTTTT
i cerAty1.NW_012001462v1    C 0 I 19
s chlSab2.chr26              53817885 107 +  58131712 A-TCTCTTTTCCATGTCAGTGTCTATAGTGCTTTTTGTTTTGTTTTGTTTTTTCTTTAACATTAAGTCTTTTCTCCATTTCAGTATTAGATACACTGAATACATTTTT
i chlSab2.chr26             C 0 I 19
s manLeu1.NW_012102332v1       433301 107 -   3636681 A-TATCTTTTCCATGTCAGTGTCTATAGTGCTTTTTGTTTTGTTTTGTTTTTTCTTTAACATTAAGTCTTTTCTCCATTTCAGTATTAGATACACTGAATACATTTTT
i manLeu1.NW_012102332v1    C 0 I 19
s colAng1.NW_012115278v1       415332 107 -   4457520 A-TCTCTTTTCCATGTCAGTGTCTATAGAGCTTTTTGTTTTGTTTTGTTTTTTCTTTAACGTTAAGTCTTTTCTCCATTTCAGTATTAGATACACTGAATACATTTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154450079  92 - 158406734 A-TGTCTTTTCCATGTCAATGTCTATAGTGGTTT---------------TTTTTTTTTACATTAAGTCTTTTCTCCATTTCAGTATTAGATATACTGAATACATTTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             285825 100 -   2682657 A-TCTCTTTTCCATGTCAATGTCTATAGTGGttt-------tttatttatttatttttaCAGTAAGTCTTTTCTCCATTTCAGTATTAGATACACTGAATACATTTTT
i saiBol1.JH378292          M 1872 C 0
s cebCap1.NW_016107707v1       307867 107 -   2086007 A-TCTCTTTTCCATGTCAATGTCTATAGTGGGtttttttgtttttttgttttttttttACATTAAGTCTTTTCTCTATTTCAGTATTAGATACACTGAATACATTTTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       372672  96 +   3831555 A-TCTCTTTTCCATGTCAATGTCTATAGTGGTTT-----------TTTTTTTTTTTTTACATTAAGTCTTTTCTCTATTTCAGTATTAGATACACTGAATACATTTTT
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e otoGar3.GL873689             357807  29 +   3845361 I

a score=16310.000000
s hg38.chr15_KI270851v1_alt    163237 17 +    263054 CTAAATGA-TTTT--TTTTC
s panTro5.chr15              73735863 17 -  83230942 CTAAGTGA-TTTT--TTTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74039408 17 -  99763055 CTAAGTGA-TTTT--TTTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        88291 17 -    281578 CTAAGTGA-TTTT--TTTTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70946435 18 + 121039945 CTAAATGATTTTT--TTTTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165571257 15 - 171882078 TGAAAATT-TTTT--TTT--
i macFas5.chr7              C 0 C 0
s colAng1.NW_012115278v1       415439 17 -   4457520 TGAAATGT-TTTT--TTTTC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154450171 16 - 158406734 CTGAA-TA-TTTTAATTT--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             285925 17 -   2682657 CTGAATTT-TTTTTTTTT--
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       307974 14 -   2086007 CTGAA-TA-TTTT--TTT--
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       372768 15 +   3831555 CTGAATTT-TTTT--TTT--
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e otoGar3.GL873689             357807 29 +   3845361 I
e manLeu1.NW_012102332v1       433408 19 -   3636681 I
e cerAty1.NW_012001462v1       386859 19 +   4116138 I
e macNem1.NW_012011934v1       420088 82126 +   2379783 T
e rheMac8.chr7              164250438 18 - 169600520 I
e chlSab2.chr26              53817992 19 +  58131712 I

a score=5358.000000
s hg38.chr15_KI270851v1_alt    163254 2 +    263054 TT
s panTro5.chr15              73735880 2 -  83230942 TT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74039425 2 -  99763055 TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        88308 2 -    281578 TT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70946453 2 + 121039945 TG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165571272 2 - 171882078 TT
i macFas5.chr7              C 0 C 0
s calJac3.chr6              154450187 2 - 158406734 TT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             285942 2 -   2682657 TT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       307988 2 -   2086007 TT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       372783 2 +   3831555 TC
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e otoGar3.GL873689             357807 29 +   3845361 I
e colAng1.NW_012115278v1       415456 0 -   4457520 C
e manLeu1.NW_012102332v1       433408 19 -   3636681 I
e cerAty1.NW_012001462v1       386859 19 +   4116138 I
e macNem1.NW_012011934v1       420088 82126 +   2379783 T
e rheMac8.chr7              164250438 18 - 169600520 I
e chlSab2.chr26              53817992 19 +  58131712 I

a score=425024.000000
s hg38.chr15_KI270851v1_alt    163256 153 +    263054 TCCAGAGATAAAAGTTTCCCTTTTTGGCTGACTATTGGATATCTGAAT-----------TTGGGAGATGAC-----AAAAGTCTAATAAAAATACAGAGAACAGACTCAGTGATTTAGGAGGCAGTGATTACGACTGAACAGTGGCGATTTCCTAGGATTCTGGGCAAA
s panTro5.chr15              73735882 153 -  83230942 TCCAGAGATAAAAGTTTCCCTTTTTGGCTGACTATTGGATATCTAAAT-----------TTGGGAGATGAC-----AAAAGTCTAATAAAAATACAGAGAACAGACTCAGTGATTTAGGAGGCAGTGATTACGACTGAACAGTGGCGATTTCCTAGGATTCTGGGCAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74039427 153 -  99763055 TCCAGAGATAAAAGTTTCCCTTTTTGGCTGACTATTGGATATCTAAAT-----------TTGGGAGATGAC-----AAAAGTCTAATAAAAATACAGAGAACAGACTCAGTGATTTAGGAGGCAGTGATTACGACTGAACAGTGGCGATTTCCTAGGATTCTGGGCAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        88310 153 -    281578 TCCAGAGATAAAAGTTTCCCTTTTTGGCTGACTATTGGATATCTAAAT-----------TTGGGAGATGAC-----AAAAGTCTAATAAAAATACAGAGAACAGACTCAGTGATTTAGGAGGCAGTGATTACAACTGAACAGTGGCGATTTCCTAGGATTCTGGGCAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70946455 164 + 121039945 CCCAGAGATAGAAGTTTCACTTTTTGGCTGACTATTGGGTATCTAAATACAATATTAACTTGGGAGATGAC-----AAAAGTCTAATAAAAATACAGAGAACAGACTCAGTGATTTAGGAGGCAGTGATTACAACTGAACAGTGGCGATTTCCTAGGATTCTGGGCAAA
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6              154450189 165 - 158406734 CCCAGAGATAGAAGTTTCCTTTTTTGGCTG----TTTGATATCTAAATACAATATTAACTTGGGAGATAACAAAACAAAAGTCTAATAAAAATACAGAGAACAGACTCAGTGGTTCAGGAGGCAGTGATTACAACTGAATTGTGGTGATATCCTAGGATTCTGGGCAGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             285944 165 -   2682657 CCCAGAGATAGAAGTTTCCTTTTTTGGCTG----CTTGATATCTAAATACAATATTAACTTGGGAGATAACAAAACAAAAGTCTAATAAAAATACAGAGAACAGACTTAGTGGTTCAGGAGGCAGTGATTACAACTGAATCGTGGTGATATCCTAGGATGCTGGGCAAA
i saiBol1.JH378292          C 0 I 156
s cebCap1.NW_016107707v1       307990 165 -   2086007 CCTAGAGATAGAATTTTCCTTTTTTGGCTG----CCTGATATCTAAATAGAATATTAACTTGGGAGATAACAAAACAAAAGTCTAATAAAAATACAGAGAACAGACTCAGTGGCTCACGAGGCTGTGATTACAACTGAATTGTGGTGATATCCTAGGATTCTGGGCAAA
i cebCap1.NW_016107707v1    C 0 I 150
s aotNan1.NW_018503298v1       372785 163 +   3831555 CCCAGAGATAGAAGTTTCCTTTTTTGGCTG----TTTGATATCTAAATACAATATTAACTTGGGAGATAACAAAAGAAAAGTCTAATAAAAATACAGAGAACAGACTC--TGGTTCAAGAGGCAGTGATTACAACTGAATCTTGGTGATATCCTAGGATTCTGGGCAAA
i aotNan1.NW_018503298v1    C 0 I 161
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e otoGar3.GL873689             357807  29 +   3845361 I
e colAng1.NW_012115278v1       415456   0 -   4457520 C
e manLeu1.NW_012102332v1       433408  19 -   3636681 I
e cerAty1.NW_012001462v1       386859  19 +   4116138 I
e macNem1.NW_012011934v1       420088 82126 +   2379783 T
e rheMac8.chr7              164250438  18 - 169600520 I
e chlSab2.chr26              53817992  19 +  58131712 I
e macFas5.chr7              165571274   0 - 171882078 C

a score=2730.000000
s hg38.chr15_KI270851v1_alt    163409 2 +    263054 AT
s panTro5.chr15              73736035 2 -  83230942 AT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74039580 2 -  99763055 AT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        88463 2 -    281578 AT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70946619 2 + 121039945 AT
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6              154450354 2 - 158406734 AT
i calJac3.chr6              C 0 I 156
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e aotNan1.NW_018503298v1       372948 161 +   3831555 I
e otoGar3.GL873689             357807 29 +   3845361 I
e cebCap1.NW_016107707v1       308155 150 -   2086007 I
e colAng1.NW_012115278v1       415456 0 -   4457520 C
e manLeu1.NW_012102332v1       433408 19 -   3636681 I
e cerAty1.NW_012001462v1       386859 19 +   4116138 I
e macNem1.NW_012011934v1       420088 82126 +   2379783 T
e rheMac8.chr7              164250438 18 - 169600520 I
e chlSab2.chr26              53817992 19 +  58131712 I
e saiBol1.JH378292             286109 156 -   2682657 I
e macFas5.chr7              165571274 0 - 171882078 C

a score=716812.000000
s hg38.chr15_KI270851v1_alt    163411 264 +    263054 CCATTTATGTACCAATTTGTTCCCATTTCATGGAATCAACTCAGAAAGTAAAACTCTCCTACTT-ACTAATTCTTGGAAACTTTCAGACACCAAAGCTTACATTT-AGTTTCAGTAGCACAAAGGTTTTCAGGGTGAGGTTTCATTCATTAGGCCCTTCAAAGTCACATCTGTTCATTTTTATCTTTCGTGCGTATACCCGCAAGCAAGTACAAACACCTGTAATACTGAGAACCACACCTTTTAACGAGAGAGCAGTTGCATCAC
s panTro5.chr15              73736037 264 -  83230942 CCATTTATGTACCAATTTGTTCCCATTTCATGGAATCAACTCAGAAAGTAAAACTCTCCTACTT-ACTAATTCTTGGAAACTTTCAGACACCAAAGCTTACATTT-AGTTTCAGTAGCACAAAGGTTTTCAGGGTGAGGTTTCATTCATTAGGCCCTTCAAAGTCACATCTGTTCATTTTTATCTTTCGTGCGTATACTCGCAAGCAAGTACAAACGCCTGTAATACTGAGAACCACACCTTTTAACGAGAGAGCAGTTGCATCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74039582 264 -  99763055 CCATTTATGTACCAATTTGTTCCCATTTCATGGAATCAACTCAGAAAGTAAAACTCTCCTACTT-ACTAATTCTTGGAAACTTTCGGACACCAAAGCTTACATTT-AGTTTCAGTAGCACAAAGGTTTTCAGGGTGAAGTTTCATTCATTAGGCCCTTCAAAGTCACATCTGTTCATTTTTATCTTTCGTGCGTATACTCGCAAGCAAGTACAAACGCCTGTAATACTGAGAACCACACCTTTTAACGAGAGAGCAGTTGCATCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        88465 264 -    281578 CCATTTATGTACCAATTTGTTCCCATTTCATGGAATCAACTCAGAAAATAAAACTCTCCTGCTT-ACTAATTCTTGGAAACTTTCAGACACCAAAGCTTACATTT-AGTTTCAGTAGCACAAAGGTTTTCAGGGTGAGGTTTCATTCATTAGGCCCTTCAAAGTCACATCTGTTCATTTTTATCTTTCGTGCGTATACTCGCAAGCAAGTACAAACGACTGTAATACTGAGAAACACACCTTTTAACGAGAGAGCAGTTGCAACAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70946621 264 + 121039945 CCATTTATGTACCAATTTGTTCCCATTTCATGGAATCAACTCAGAAAGTAAAACTCTCCTACTT-ACTAATTCTTGGAAACTTTCAGACACCAAAGCTTACATTT-AGTTTCAGTAGCACAAAGGTCTTCAGGGTGAGGTTTCATTCATTAGACCCTTCAAAGTCACATCTGTTCATTTTTTTCTTTCGTGTGTATACTCGCAAGCAAGTACAAATGCCTGTAATACTGAGAACCACACCTTTTAACGAGACAGCAGTTGCATCAC
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6              154450512 262 - 158406734 CCATTTATGTATCAATTTGTTCCCATTTCATGGAGACAACAAAGAATGTAAAACTCCCCTGCTTAAGTGATTCTTAGAAACTTTCAGACATTGAAGCTTAGGTTT-AGCTCCAATAGTAC-AAGGTTTTCAGGGTGAGGTTTCATTCGTTAGGCTCTTCAAAGTGACATCTGTTCATTTT--TCTTTCATGCATATACCCTCAAGCAGGCGCGCATACCTGTGATACTGAGAACCACACGGTTTAACGAGAGAGCAGTTGCATCAA
i calJac3.chr6              I 156 C 0
s saiBol1.JH378292             286265 263 -   2682657 CCATTTATGTATCAGTTTGTTCCCATTTCATGGAAACAACAAAGAATGTAAAACTCTTCTACTTAAGTGATTCTTGGAAACTTTCAGACACTGAGGCTTAGGTTT-AGCTCCAATAGCACAAAGGTTTCCAGGGTGAGGTTTCATTCATTAGGCTCTTCAAAGTCACGTCTGTTCATTTC--CCCTTGATGCATATACCCTCAAGCAGACGCATTTAGCTGTGATACTGAGAACCACACTGTCTCATGAGAGAGCAGTTACATCAA
i saiBol1.JH378292          I 156 C 0
s cebCap1.NW_016107707v1       308305 263 -   2086007 CCATTTATATATCAATTTGTTCCCATTTCATGGAAACAACAAAGAATATAAAACTCCCCTACTTAACTGATTCTTGGAAACTTTCAGACACTGAAGCTTAGGTTT-ATCTCCAATAGCACAAAGGTTTTCAGGGTGAGGTTTCATTCATTAGGCTCTTCAAAGTCACATCTGTTCATTTT--TCTTTCATGCATATACTCTCAAGCAGGCGCAAACAGCTGTGATACTGAGAACCACACTGTTTAGTGAGAGAGCAGTTGCATCAA
i cebCap1.NW_016107707v1    I 150 I 40
s aotNan1.NW_018503298v1       373109 260 +   3831555 CCATATATGTATCAATTTGTTCCCATTTCATGGA---AACAAAGAATGTAAAACTCCCCTACTTAACTGATTCTTGGAAACTTTCAGACACTGAAGCTTAGGTTTGAGCTCCAATAGCACAAAGGTTTTCAGGGTGAGGTTTCATTCATTAGGCTCTTCAAAGTCACATCAGTTCATTTT--TCTTTCATGCATATACCCTCAAGCAGGCGCAAATACCTGTGATACTGAGAACCACACC-TTTAACGAGAGAGCAGTTGCATCAA
i aotNan1.NW_018503298v1    I 161 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e otoGar3.GL873689             357807  29 +   3845361 I
e colAng1.NW_012115278v1       415456   0 -   4457520 C
e manLeu1.NW_012102332v1       433408  19 -   3636681 I
e cerAty1.NW_012001462v1       386859  19 +   4116138 I
e macNem1.NW_012011934v1       420088 82126 +   2379783 T
e rheMac8.chr7              164250438  18 - 169600520 I
e chlSab2.chr26              53817992  19 +  58131712 I
e macFas5.chr7              165571274   0 - 171882078 C

a score=78851.000000
s hg38.chr15_KI270851v1_alt    163675 46 +    263054 TGGCTTCCACTGCCTTGACAGCAGGCAGCACCAAAAGCAGTGACAT
s panTro5.chr15              73736301 46 -  83230942 TGGCTTCCACTGCCTTGACAACAGGTAGCACCAAAAGCAGTGACAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74039846 46 -  99763055 TGGCTTCCACTGCCTTGACAACAGGTAGCACCAAAAGCAGTGACAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        88729 46 -    281578 TGGCTTCCACTGCCTTGACAACAGGCAGCACCAAAAGCAGTGACAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70946885 46 + 121039945 TGGCTTCCACTGCCTTGACAACAGGCAGCACCAAAAGCACTGACAT
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6              154450774 40 - 158406734 -GACTT---CTGTTTAGACAATGGGCAGCACCAGAAGCAGTGAC--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             286528 40 -   2682657 -GACTT---CTGTTTAGATAACGGGCAGCACCAGAAGCAGTGAT--
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       373369 40 +   3831555 -GACTT---CTGTTTAGACAACGGGCAGCACCAGAAGCAGTGAC--
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e otoGar3.GL873689             357807 29 +   3845361 I
e cebCap1.NW_016107707v1       308568 40 -   2086007 I
e colAng1.NW_012115278v1       415456  0 -   4457520 C
e manLeu1.NW_012102332v1       433408 19 -   3636681 I
e cerAty1.NW_012001462v1       386859 19 +   4116138 I
e macNem1.NW_012011934v1       420088 82126 +   2379783 T
e rheMac8.chr7              164250438 18 - 169600520 I
e chlSab2.chr26              53817992 19 +  58131712 I
e macFas5.chr7              165571274  0 - 171882078 C

a score=8595.000000
s hg38.chr15_KI270851v1_alt    163721 6 +    263054 AAGGAC
s panTro5.chr15              73736347 6 -  83230942 AAGGAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74039892 6 -  99763055 AAGGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        88775 6 -    281578 AAGGAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70946931 6 + 121039945 AAGGAC
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011934v1       337962 6 +   2379783 AAGGAC
i macNem1.NW_012011934v1    T 82126 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e aotNan1.NW_018503298v1       373409 0 +   3831555 C
e otoGar3.GL873689             357807 29 +   3845361 I
e cebCap1.NW_016107707v1       308568 40 -   2086007 I
e colAng1.NW_012115278v1       415456 0 -   4457520 C
e manLeu1.NW_012102332v1       433408 19 -   3636681 I
e cerAty1.NW_012001462v1       386859 19 +   4116138 I
e rheMac8.chr7              164250438 18 - 169600520 I
e chlSab2.chr26              53817992 19 +  58131712 I
e saiBol1.JH378292             286568 0 -   2682657 C
e calJac3.chr6              154450814 0 - 158406734 C
e macFas5.chr7              165571274 0 - 171882078 C

a score=119989.000000
s hg38.chr15_KI270851v1_alt    163727 34 +    263054 TAAGGACAATTGTG-TTGAAACTGAGGTCATGATG
s panTro5.chr15              73736353 34 -  83230942 TAAGGACAATTGTG-TTGAAACTGAGGTCATGATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74039898 34 -  99763055 TAAGGACAATTGTG-TTGAAACTGAGGTCATGATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        88781 34 -    281578 TAAGGACAATTGTG-TTGAAATTGAGGTCATGATG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70946937 34 + 121039945 TAAGGACAGTTGTG-TTGAAACTGAGGTCATGATG
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011934v1       337968 34 +   2379783 TAAGGACAGTTGTG-TTGCAACTGAGGTCATGATG
i macNem1.NW_012011934v1    C 0 C 0
s calJac3.chr6              154450814 35 - 158406734 TAAAGACAATTGTGTTTGAAACTGACGTCGTGATT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             286568 34 -   2682657 TAAGGACAACTGTG-CTGAAACTGAGGTTATGATT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       308608 34 -   2086007 TAAGGACACTTGTG-TTGAAACTGAGGTCATGATT
i cebCap1.NW_016107707v1    I 40 C 0
s aotNan1.NW_018503298v1       373409 34 +   3831555 TAAGGACAATTGTA-TTGAAACTGAGGTCATGATT
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e otoGar3.GL873689             357807 29 +   3845361 I
e colAng1.NW_012115278v1       415456  0 -   4457520 C
e manLeu1.NW_012102332v1       433408 19 -   3636681 I
e cerAty1.NW_012001462v1       386859 19 +   4116138 I
e rheMac8.chr7              164250438 18 - 169600520 I
e chlSab2.chr26              53817992 19 +  58131712 I
e macFas5.chr7              165571274  0 - 171882078 C

a score=430073.000000
s hg38.chr15_KI270851v1_alt    163761 157 +    263054 TTGGGATTTTGAGGGCTGAATGTTCC-AAGTAAGTGGTATATATAGAATTCTCTCTGACTTGAAATTTTCCCTTTCTGGACCTCTGGATGCTGAGGCTAAGAGTGTCCATATGACAGTGTCTTCCAAGACAGGAATCAGCAACCTTTTTTT--GTTTTTC------
s panTro5.chr15              73736387 158 -  83230942 TTGGGATTTTGAGGGCTGAATGTTCC-AAGTAAATGGTATATATAGAATTCTCTCTGACTTGAAATTTTCCCTTTCTGGACCTCTGGATGCTGAGGCTAAGAGTGTCCATATGACAGTGTCTTCCAAGACAGGAATCAGCAACCTTTTTTT--TTTTTTT-----A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74039932 162 -  99763055 TTGGGATTTTGAGGGCTGAATGTTCC-AAGTAAATGGTATATATAGAATTCTCTCTGACTTGAAATTTTCCCTTTCTGGACCTCTGGATGCTGAGGCTAAGAGTGTCCATATGACAGTGTCTTCCAAGACAGGAATCAGCAACCttttttt--ttttttt-ttttA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        88815 163 -    281578 TTGGGATTTTGAGGGCTGAATGTTCC-AAGTAAATGGTATATATAGAATTCTCTCTGACTTGAAATTTTCTCTTTCTGGACCTCTGGATGCTGAGGCTAAGAGTGTCCATATGACAGTGTCTTCCAAGACAGGAATCAGCAACCttttttt--ttttttttttttA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70946971 162 + 121039945 TTGGGATCTTGAGGGCTGAATGTTCC-AAATAAATGGTACATATAGAATTCTCTCTGACTTGAAATTTTCCCTTTCTGGACCTCCGGATGCTGAGGCTAAGAGTGTCCATATGACAGTGTCTTCCAAGACAGGAATCAGCAACCTTTTTAT--TTTTTTT-TTTTA
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6              154450849 152 - 158406734 TTGGGGTCTTGAGGGCTAAAGGTTCC-AAAGAAATGGTATATACAGAATTCTATCTGACTGGAAATTTCCCTTTTCTAGACCTCTGGGTGCTGAGGCTGA----GTCCATATGACAGTGCCTTCCATGACAGGAATCGGCATCCTTTTTTT---------CTTCCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             286602 163 -   2682657 TTGGGGTCTTGAGGGCTAAAGTTTCC-AAAGAAATGGTATATATAGAATTCTATCTGACTTGAAATTTTCCTTTTCTGGACCTCTGGATGCTGAGGCTAAGAGTGTCCATATGACAATGCCTTCCATGGCAGGAATCAGCATCCTTTTTTT--TTTTTTCTTTCTA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       308642 165 -   2086007 TTGGGGTCTTGAGGGCTAAAGTTTCC-AAAGAAATGGTATATATAGAATTCTATATGACTTGAAATTTTCCTTTTATAGACCTCTGGATGCTGAGGCTAAGGGTGTCCATATGACAATGCCTTCCATGGCAGGAATCAGCATCCtttttttttttttttttttCCA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       373443 159 +   3831555 TTGGGGTCCTGAGGGCTAAAGTTTCCAAAAAAAATGGTATATATAGAATTCTATCTGACTTGAAATTTTCCTTTTCTAGACCTCTGGATGCTGAGGCTAAGAGTGTCCATATGACAATGCCTTCCATGTCAGGAATCAGCATCCTTTTTTT-------TTTTTCCA
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13438579 839 +  16154928 I
e canFam3.chr3               59935322 721 -  91889043 I
e otoGar3.GL873689             357807  29 +   3845361 I
e colAng1.NW_012115278v1       415456   0 -   4457520 C
e manLeu1.NW_012102332v1       433408  19 -   3636681 I
e cerAty1.NW_012001462v1       386859  19 +   4116138 I
e macNem1.NW_012011934v1       338002   0 +   2379783 C
e rheMac8.chr7              164250438  18 - 169600520 I
e chlSab2.chr26              53817992  19 +  58131712 I
e macFas5.chr7              165571274   0 - 171882078 C

a score=104273.000000
s hg38.chr15_KI270851v1_alt    163918 27 +    263054 TGTATCAGTAATTCATTCTGTATATTT
s panTro5.chr15              73736545 27 -  83230942 TGTATCAGTAATTCATTCTGTATATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040094 27 -  99763055 TGTATCAGTAATTCATTCTGTATGTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        88978 27 -    281578 TGTATCAGTAATTCATTCTGTTTATTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947133 27 + 121039945 TGTATCAGTAATTCATTCTGTATATTT
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6              154451001 27 - 158406734 CGTATCAGTAATTCATTCTGTATATTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             286765 27 -   2682657 CGTATCAGTAATTCATTCTGTATATTT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       308807 27 -   2086007 TGTATCAGTAATTCATTCTGTATATTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       373602 27 +   3831555 CGTGTCAGTAATTCATTCTGTGTATTT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13439418 27 +  16154928 tgtatcagtagttcattcTGTATATTT
i proCoq1.NW_012148396v1    I 839 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e canFam3.chr3               59935322 721 -  91889043 I
e otoGar3.GL873689             357807 29 +   3845361 I
e colAng1.NW_012115278v1       415456  0 -   4457520 C
e manLeu1.NW_012102332v1       433408 19 -   3636681 I
e cerAty1.NW_012001462v1       386859 19 +   4116138 I
e macNem1.NW_012011934v1       338002  0 +   2379783 C
e rheMac8.chr7              164250438 18 - 169600520 I
e chlSab2.chr26              53817992 19 +  58131712 I
e macFas5.chr7              165571274  0 - 171882078 C

a score=400913.000000
s hg38.chr15_KI270851v1_alt    163945 102 +    263054 TAAAAAGTTTTA-ACCTCTTCTTCCTAGCCCTCCAGTATTTGTTTATAAATTAAaac---gtttcccaaagtgttttctgtgaaacaatagttctaaaagg--tgctc
s panTro5.chr15              73736572 102 -  83230942 TAAAAAGTTTTA-ACCTCTTCTTCCTAGCCCTCCAGTATTTGTTTATAAATTAAaac---gtttcccaaagtgttttctgtgaaacaatagttctaaaagg--tgctc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040121 102 -  99763055 TAAAAAGTTTTA-ACCTCTTCTTCCTAGCCCTCCAGTATTTGTTTATAAATTAAaac---gtttcccaaagtgttttctgtgaaacagtagttctaaaagg--tgctc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89005 102 -    281578 TAAAAAGTTTTA-ACCTCTTCTTCCTAGCCCTCCAGTATTTGTTTATAAATTAAAAC---GTTTCCCTAAGTGTTTTCTGTGAAACAATAGTTCTAAAAGG--TGCTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947160 102 + 121039945 TAAAAAGTTTTA-ACCTCTTGTTCCTAGCCCTCCAGTGTTTGTTTATAAGTTAAaac---gtttcccaaagtgttttctgtgaaacaatagttctaaaagg--tgctc
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6              154451028 102 - 158406734 TAAGAAGTTTTA-GCCTCTTCCTCCTAGCCCTCCAGTATTTGTTAATTAGTTAAaac---gtttcccaaagtgttttctgtgaaaccttagttctaaaaga--tgctc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             286792 102 -   2682657 TAAGAAGTTTTA-GCCTCTTCCTCCTGGCCCTCCAGTATTTGTTAATTAATTAAAAT---GTTTCCTAAAATGTTTTCTGTGAAACCTTTGTTCTAAAAGA--TGCTC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       308834 104 -   2086007 TAAGAAGTTTTA-ACCTCTTCCTCCTAGCCCTCCAGTATTTGTTAATTAATTAAaac---gtttcccaaagtgttttctgtgaaaccttagttctaaaagatgtgctc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       373629 102 +   3831555 TAAAAAGTTTTA-GCCTCTTCCTCCTAGCCCTCCAGTATTTGTTAATTAATTAAaat---gtttcccaaagtgttttctgtgaaaccttagttctaaaaga--tactc
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13439445  98 +  16154928 TAAAAAGTTTTA---TACTTCCTTTTAGCCCTCCAGTATAT-----TAAATTAAAAcaatatttcccaaagtgttttccatgaaacaatagctctaaaaga--tgctc
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59936043 102 -  91889043 taaaaAGTTTTCCATCACTTCTTCACAGCCCTCTAGTATTTGTTAATGAATT-Aaac---atttcccaaaatgtttttcatcaaacactagttgtgaaaga--tactc
i canFam3.chr3              I 721 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e otoGar3.GL873689             357807  29 +   3845361 I
e colAng1.NW_012115278v1       415456   0 -   4457520 C
e manLeu1.NW_012102332v1       433408  19 -   3636681 I
e cerAty1.NW_012001462v1       386859  19 +   4116138 I
e macNem1.NW_012011934v1       338002   0 +   2379783 C
e rheMac8.chr7              164250438  18 - 169600520 I
e chlSab2.chr26              53817992  19 +  58131712 I
e macFas5.chr7              165571274   0 - 171882078 C

a score=4664.000000
s hg38.chr15_KI270851v1_alt    164047 1 +    263054 t
s panTro5.chr15              73736674 1 -  83230942 t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040223 1 -  99763055 t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89107 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947262 1 + 121039945 t
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165571274 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s calJac3.chr6              154451130 1 - 158406734 t
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             286894 1 -   2682657 T
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       308938 1 -   2086007 t
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       373731 1 +   3831555 t
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13439543 1 +  16154928 t
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59936145 1 -  91889043 t
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e otoGar3.GL873689             357807 29 +   3845361 I
e colAng1.NW_012115278v1       415456 0 -   4457520 C
e manLeu1.NW_012102332v1       433408 19 -   3636681 I
e cerAty1.NW_012001462v1       386859 19 +   4116138 I
e macNem1.NW_012011934v1       338002 0 +   2379783 C
e rheMac8.chr7              164250438 18 - 169600520 I
e chlSab2.chr26              53817992 19 +  58131712 I

a score=268566.000000
s hg38.chr15_KI270851v1_alt    164048 27 +    263054 aagaaaaGCTAAGTACATGGCAAAATC
s panTro5.chr15              73736675 27 -  83230942 aagaaaaGCTAAGTACATGGCAAAATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040224 27 -  99763055 aagaaaaGCTAAGTACATGGCAAAATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89108 26 -    281578 AAGAAAAGCTAAGTAAAT-GCAAAATC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947263 27 + 121039945 aagaaaaGCTAAGTACATAGCAAAATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164250456 27 - 169600520 AAGAAAAGCTAAGTACATGGAAAAATC
i rheMac8.chr7              I 18 C 0
s macFas5.chr7              165571275 27 - 171882078 AAGAAAAGCTAAGTACATGGAAAAATC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       386878 27 +   4116138 AAGAAAAGCTAAGTACATGGAAAAATC
i cerAty1.NW_012001462v1    I 19 C 0
s chlSab2.chr26              53818011 27 +  58131712 AAGAAAAGCTAAGTACATGGAAAAATC
i chlSab2.chr26             I 19 C 0
s manLeu1.NW_012102332v1       433427 27 -   3636681 AAGAAAAGCTAAGTACATGGAAAAATC
i manLeu1.NW_012102332v1    I 19 C 0
s colAng1.NW_012115278v1       415456 27 -   4457520 AAGAAAAACTAAGTACATGGAAAAATC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154451131 27 - 158406734 aagaaaaGCTAAGTACATGGAAAAATC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             286895 27 -   2682657 AAGAAAAGCTAAGTACATGGAAAAATC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       308939 27 -   2086007 aagaaaagCTAAGTACATGGAAAAATC
i cebCap1.NW_016107707v1    C 0 I 3656
s aotNan1.NW_018503298v1       373732 26 +   3831555 aagaaaaGCTAAGTACAT-GAAAAATC
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13439544 27 +  16154928 aagaaaaGCTAATTACATAGAAAAATC
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59936146 17 -  91889043 gagaaaaaCTATTTACA----------
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e otoGar3.GL873689             357807 29 +   3845361 I
e macNem1.NW_012011934v1       338002  0 +   2379783 C

a score=146296.000000
s hg38.chr15_KI270851v1_alt    164075 14 +    263054 CAAAGTATATGTTT
s panTro5.chr15              73736702 14 -  83230942 CAAAGTATATGTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040251 14 -  99763055 CAAAGTATATGTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89134 14 -    281578 CAAAGTATATGTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947290 14 + 121039945 CAAAGTATATGTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164250483 14 - 169600520 CAAAGTATATGTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165571302 14 - 171882078 CAAAGTATATGTTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       386905 14 +   4116138 CAAAGTATATGTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53818038 14 +  58131712 CAAAGTATATGTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       433454 14 -   3636681 CAAAGTATATGTTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       415483 14 -   4457520 CAAAGTGTATGTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154451158 14 - 158406734 CAAAGTATATGTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             286922 14 -   2682657 CAAAGTATATGTTT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       312622 14 -   2086007 CAAAGTATATGTTT
i cebCap1.NW_016107707v1    I 3656 C 0
s aotNan1.NW_018503298v1       373758 14 +   3831555 CAAAGTATATGTTT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13439571 14 +  16154928 CAAAGTATATTTTT
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               59936163  1 -  91889043 -------------T
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e otoGar3.GL873689             357807 29 +   3845361 I
e macNem1.NW_012011934v1       338002  0 +   2379783 C

a score=99210.000000
s hg38.chr15_KI270851v1_alt    164089 8 +    263054 TATTCATT
s panTro5.chr15              73736716 8 -  83230942 TATTCATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040265 8 -  99763055 TATTCATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89148 8 -    281578 TATTCATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947304 8 + 121039945 TATTCATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164250497 8 - 169600520 TATTCATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165571316 8 - 171882078 TATTCATT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       386919 8 +   4116138 TATTCATT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53818052 8 +  58131712 TATTCATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       433468 8 -   3636681 TATTCATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       415497 8 -   4457520 TATTCATT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154451172 8 - 158406734 TATTCATT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             286936 8 -   2682657 TATTCATT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       312636 8 -   2086007 TATTCATT
i cebCap1.NW_016107707v1    C 0 I 1
s aotNan1.NW_018503298v1       373772 8 +   3831555 TATTCATT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13439585 8 +  16154928 TATTCATT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             357836 8 +   3845361 tatatatt
i otoGar3.GL873689          I 29 C 0
s canFam3.chr3               59936164 8 -  91889043 TTCTTATT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e macNem1.NW_012011934v1       338002 0 +   2379783 C

a score=109012.000000
s hg38.chr15_KI270851v1_alt    164097 11 +    263054 ACATTTGATGA
s panTro5.chr15              73736724 11 -  83230942 ACATTTGATGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040273 11 -  99763055 ACATTTGATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89156 11 -    281578 ACATTTGATGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947312 11 + 121039945 ACATTTGATGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164250505 11 - 169600520 ACATTTGATGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165571324 11 - 171882078 ACATTTGATGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       386927 11 +   4116138 ACATTTGATGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53818060 11 +  58131712 ACGTTTGATGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       433476 11 -   3636681 ACATTTGATGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       415505 11 -   4457520 ACATTTGATGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154451180 11 - 158406734 GCATTTGATGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             286944 11 -   2682657 GCATTTGATGA
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       373780 11 +   3831555 GCATTTGATGA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13439593 11 +  16154928 ACATTTGATGA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             357844  7 +   3845361 atatata----
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59936172 11 -  91889043 ATATTTGATGA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e cebCap1.NW_016107707v1       312644  1 -   2086007 I
e macNem1.NW_012011934v1       338002  0 +   2379783 C

a score=1365.000000
s hg38.chr15_KI270851v1_alt    164108 5 +    263054 Atttt
s panTro5.chr15              73736735 5 -  83230942 ATAtt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040284 5 -  99763055 ATAtt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89167 5 -    281578 ATAtt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947323 5 + 121039945 Atttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164250516 4 - 169600520 tt-tt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165571335 4 - 171882078 tt-tt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       386938 4 +   4116138 At-tt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53818071 4 +  58131712 At-tt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       433487 4 -   3636681 At-tt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       415516 4 -   4457520 At-tt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154451191 4 - 158406734 AA-TC
i calJac3.chr6              C 0 I 1
s saiBol1.JH378292             286955 4 -   2682657 AA-TT
i saiBol1.JH378292          C 0 I 1
s aotNan1.NW_018503298v1       373791 4 +   3831555 AA-TT
i aotNan1.NW_018503298v1    C 0 I 1
s otoGar3.GL873689             357851 4 +   3845361 at-tt
i otoGar3.GL873689          C 0 I 1
s canFam3.chr3               59936183 5 -  91889043 ATATT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13439604 0 +  16154928 C
e cebCap1.NW_016107707v1       312644 1 -   2086007 I
e macNem1.NW_012011934v1       338002 0 +   2379783 C

a score=13090.000000
s hg38.chr15_KI270851v1_alt    164113 2 +    263054 t-t
s panTro5.chr15              73736740 2 -  83230942 t-t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040289 2 -  99763055 t-t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89172 2 -    281578 t-t
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947328 2 + 121039945 t-t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164250520 3 - 169600520 tgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165571339 2 - 171882078 t-t
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       386942 2 +   4116138 t-t
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53818075 2 +  58131712 t-t
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       433491 2 -   3636681 t-t
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       415520 2 -   4457520 t-t
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             286960 2 -   2682657 T-T
i saiBol1.JH378292          I 1 C 0
s aotNan1.NW_018503298v1       373796 2 +   3831555 T-T
i aotNan1.NW_018503298v1    I 1 C 0
s otoGar3.GL873689             357856 2 +   3845361 t-t
i otoGar3.GL873689          I 1 C 0
s canFam3.chr3               59936188 2 -  91889043 T-T
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13439604 0 +  16154928 C
e cebCap1.NW_016107707v1       312644 1 -   2086007 I
e macNem1.NW_012011934v1       338002 0 +   2379783 C
e calJac3.chr6              154451195 1 - 158406734 I

a score=6695.000000
s hg38.chr15_KI270851v1_alt    164115 1 +    263054 t
s panTro5.chr15              73736742 1 -  83230942 t
i panTro5.chr15             C 0 I 4
s panPan2.chr15              74040291 1 -  99763055 t
i panPan2.chr15             C 0 I 4
s gorGor5.CYUI01000141v1        89174 1 -    281578 t
i gorGor5.CYUI01000141v1    C 0 I 4
s nomLeu3.chr6               70947330 1 + 121039945 t
i nomLeu3.chr6              C 0 I 4
s rheMac8.chr7              164250523 1 - 169600520 t
i rheMac8.chr7              C 0 I 4
s macFas5.chr7              165571341 1 - 171882078 t
i macFas5.chr7              C 0 I 4
s cerAty1.NW_012001462v1       386944 1 +   4116138 t
i cerAty1.NW_012001462v1    C 0 I 4
s chlSab2.chr26              53818077 1 +  58131712 t
i chlSab2.chr26             C 0 I 4
s manLeu1.NW_012102332v1       433493 1 -   3636681 t
i manLeu1.NW_012102332v1    C 0 I 4
s colAng1.NW_012115278v1       415522 1 -   4457520 t
i colAng1.NW_012115278v1    C 0 I 4
s saiBol1.JH378292             286962 1 -   2682657 T
i saiBol1.JH378292          C 0 I 1878
s otoGar3.GL873689             357858 1 +   3845361 c
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59936190 1 -  91889043 T
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13439604 0 +  16154928 C
e aotNan1.NW_018503298v1       373798 0 +   3831555 C
e cebCap1.NW_016107707v1       312644 1 -   2086007 I
e macNem1.NW_012011934v1       338002 0 +   2379783 C
e calJac3.chr6              154451195 1 - 158406734 I

a score=34406.000000
s hg38.chr15_KI270851v1_alt    164116 6 +    263054 tgtttt
s panTro5.chr15              73736747 6 -  83230942 tgtttt
i panTro5.chr15             I 4 C 0
s panPan2.chr15              74040296 6 -  99763055 tgtttt
i panPan2.chr15             I 4 C 0
s gorGor5.CYUI01000141v1        89179 6 -    281578 tgtttt
i gorGor5.CYUI01000141v1    I 4 C 0
s nomLeu3.chr6               70947335 6 + 121039945 tgtttt
i nomLeu3.chr6              I 4 C 0
s rheMac8.chr7              164250528 6 - 169600520 tgtttt
i rheMac8.chr7              I 4 C 0
s macFas5.chr7              165571346 6 - 171882078 tgtttt
i macFas5.chr7              I 4 C 0
s cerAty1.NW_012001462v1       386949 6 +   4116138 tgtttt
i cerAty1.NW_012001462v1    I 4 C 0
s chlSab2.chr26              53818082 6 +  58131712 tgtttt
i chlSab2.chr26             I 4 C 0
s manLeu1.NW_012102332v1       433498 6 -   3636681 tgtttt
i manLeu1.NW_012102332v1    I 4 C 0
s colAng1.NW_012115278v1       415527 6 -   4457520 tgtgtt
i colAng1.NW_012115278v1    I 4 C 0
s otoGar3.GL873689             357859 6 +   3845361 tctttt
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59936191 6 -  91889043 TTCTTT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13439604 0 +  16154928 C
e aotNan1.NW_018503298v1       373798 0 +   3831555 C
e cebCap1.NW_016107707v1       312644 1 -   2086007 I
e macNem1.NW_012011934v1       338002 0 +   2379783 C
e saiBol1.JH378292             286963 1878 -   2682657 I
e calJac3.chr6              154451195 1 - 158406734 I

a score=1002011.000000
s hg38.chr15_KI270851v1_alt    164122 228 +    263054 ttcctctcgagagggagtcttgttctgtcgctcaggctggggtgcagcggcatgattttggctcactgcaaccccttcctctcgggttcaagcagttctc-tgcctcagcctcctgagtactcagctaggattacaggcgccctccaccatgcccagctaattgttgaatttttagtaaagacggagtttcaccatcttggtcaggctggtcttgaactcc-tgacctca
s panTro5.chr15              73736753 224 -  83230942 ttcctctcgagagggagtcttgttctgtcgctcaggctggagtgcagcagcatgattttggctcactgcaaccactgcctccccggttcaagcagttctc-tgcctcagcctcctgagt----agctaggattacaggcaccctccgccatgcccagctaattgttgtatttttaataaagacggagtttcaccatcttggtcaggctggtcttgaactcc-tgacctca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040302 224 -  99763055 ttcctctcgagagggagtcttgttctgtcgctcaggctggagtgcagcagcatgattttggctcactgcaaccactgcctccccggttcaagcagttctc-tgcctcagcctcctgagt----agctaggattacaggcaccctccaccatgcccagctaattgttgtatttttaataaagacggagtttcaccatcttggtcaggctggtcttgaactcc-tgacctca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89185 225 -    281578 ttcctctcgagagggagtcttgctctgtcgctcaggctggagtgcagcggcatgattttggctcactgcaaccactgcctccccggttcaagcagttctc-tgcctcagcctcctgagt----agctaggattacaggcaccctccaccatgctcagctaattgttgtatttttaataaagacggagtttcaccatcttggtcaggctggtcttgaactccttgacctca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947341 224 + 121039945 ttcctctcgagagggagtcttgctctgtcgctcaggctggagtgcagtggcatgatcttggctcactgcaaccactgcctcctgggttcaagcagttccc-tgccttagcctcctgaat----agctaggattacaggcgccctccaccacgcccagctaattgttgtatttttagtaaagacggagtttcaccatcttggtcaggctggtcttgaactcc-tgatctca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164250534 214 - 169600520 ttcctgtcgtgagggagtcttgttctgttgctcaggctggagggcagtggcatgatctcggctcactgcaaccactgcctcctg---------agttctc-tgcctcagcctcctgggt----agctgggattacaggtgccctccaccacgcccagctaattgttgtatttttagtaaagacgga-tttcaccatcttggccaggctggtctcgaacttg-tgacctca
i rheMac8.chr7              C 0 I 2
s macFas5.chr7              165571352 214 - 171882078 ttcctgtcgtgagggagtcttgttctgttgctcaggctggagggcagtggcatgatctcggctcactgcaaccaccgcctcctg---------agttctc-tgcctcagcctcctgggt----agctgggattacaggtgccctccaccacgcccagctaattgttgtatttttagtaaagacgga-tttcaccatcttggccaggctggtctcgaacttg-tgacctca
i macFas5.chr7              C 0 I 2
s cerAty1.NW_012001462v1       386955 214 +   4116138 ttcctctcgtgagggagtcttgttctgttgctcaggctggagggcagtggcatgatctcggctcactgcaaccaccgcctcctg---------agttctc-tgcctcagcctcctgggt----agctgggattacaggtgccctccaccacgcccagctaattgttgtatttttagtaaagacgga-tttcaccatcttggccaggctggtctcgaacttg-tgacctca
i cerAty1.NW_012001462v1    C 0 I 576
s chlSab2.chr26              53818088 214 +  58131712 ttcctctcgtgagggagtcttgttctgttgctcaggctggagggcagtggcatgatctcggctcactgcaacctccgcctcccg---------agttctc-tgcctcagcctcctgggt----agctgggattacaggtgccctccaccacgcccagctaattgttgtatttttagtaaagatgga-tttcaccatcttggccaggctggtctcgaacttg-tgacctca
i chlSab2.chr26             C 0 I 2
s manLeu1.NW_012102332v1       433504 214 -   3636681 ttcctctcgtgagggagtcttgttctgttgctcaggctggaggccagtggcatgatctcggctcactgcaaccaccgcctcctg---------agttctc-tgcctcagcctcctgggt----agctgggattacaggtgccctccaccacgcccagctaattgttgtatttttagtaaagacgga-tttcaccatcttggccaggctggtctcgaacttg-tgacctca
i manLeu1.NW_012102332v1    C 0 I 2
s colAng1.NW_012115278v1       415533 223 -   4457520 ttcctctcgcgagggagtcttgctctgttgcttaggctggagggcagtggcatgatctcggctcactgcaaccactgcctgccgggttcaagcagttctc-tgcctcagcctcctgggt----agctgggattacaggtgccctccaccacgcccagctaattgttgtattatcagtaaagacgga-tttcaccatcttggccaggctgatctcgaacttg-tgacctca
i colAng1.NW_012115278v1    C 0 I 575
s otoGar3.GL873689             357865 156 +   3845361 ttttt------agacagtctcactttgtcccccttggtagagtgctgtggcatcat---aagtcacagcattcgcaaactcatgggctcaagggatcctcttgcctca--------------------------------------------------------------ttttagtagagatagagtctcac--tcttgctcaggctggtctcaaactcc-tgagcaca
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13439604   0 +  16154928 C
e canFam3.chr3               59936197   0 -  91889043 C
e aotNan1.NW_018503298v1       373798   0 +   3831555 C
e cebCap1.NW_016107707v1       312644   1 -   2086007 I
e macNem1.NW_012011934v1       338002   0 +   2379783 C
e saiBol1.JH378292             286963 1878 -   2682657 I
e calJac3.chr6              154451195   1 - 158406734 I

a score=163405.000000
s hg38.chr15_KI270851v1_alt    164350 45 +    263054 --taa----cccacctcggcctcc--caaagtgctgggtttacaggtgtgagc
s panTro5.chr15              73736977 49 -  83230942 --tgatctgcccacctcggcctcc--caaagtgctgggtttacaggtgtgagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040526 49 -  99763055 --tgatctgcccacctcggcctcc--caaagtgctgggtttacaggtgtgagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89410 49 -    281578 --tgatctgcccacctcggcctcc--caaagtgctgggtttacaggtgtgagc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947565 51 + 121039945 --tgatctgcccaccttggcctccgacaaagtgctgggattgcaggtgtgagc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164250750 49 - 169600520 --tgatcctctcaccttggcctcc--caaagtgctaggattacagatgtgagc
i rheMac8.chr7              I 2 C 0
s macFas5.chr7              165571568 49 - 171882078 --tgatcctctcaccttggcctcc--caaagtgctaggattacagatgtgagc
i macFas5.chr7              I 2 C 0
s chlSab2.chr26              53818304 49 +  58131712 --tgatcctctcaccttggcctcc--caaagtgctaggattacagatgtgagc
i chlSab2.chr26             I 2 I 525
s manLeu1.NW_012102332v1       433720 49 -   3636681 --tgatcctctcaccttggcctcc--caaagtgctaggattacagatgtgagc
i manLeu1.NW_012102332v1    I 2 C 0
s otoGar3.GL873689             358021 51 +   3845361 ggtgatgtacctgccttggcctcc--tggagtgctgggattataggtgtgagc
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13439604  0 +  16154928 C
e canFam3.chr3               59936197  0 -  91889043 C
e aotNan1.NW_018503298v1       373798  0 +   3831555 C
e cebCap1.NW_016107707v1       312644  1 -   2086007 I
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e macNem1.NW_012011934v1       338002  0 +   2379783 C
e saiBol1.JH378292             286963 1878 -   2682657 I
e calJac3.chr6              154451195  1 - 158406734 I

a score=32132.000000
s hg38.chr15_KI270851v1_alt    164395 14 +    263054 caccatgcccagcc
s panTro5.chr15              73737026 14 -  83230942 caccatgcccggcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040575 14 -  99763055 caccatgcccggcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89459 14 -    281578 caccatgcctggcc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947616 14 + 121039945 caccatgcccggcc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164250799 14 - 169600520 tatcgcgcccagcc
i rheMac8.chr7              C 0 I 512
s macFas5.chr7              165571617 14 - 171882078 tatcgcgcccagcc
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012102332v1       433769 14 -   3636681 tatcgtgcccagcc
i manLeu1.NW_012102332v1    C 0 T 75194
s otoGar3.GL873689             358072 13 +   3845361 caccg-gcctggcc
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13439604  0 +  16154928 C
e canFam3.chr3               59936197  0 -  91889043 C
e aotNan1.NW_018503298v1       373798  0 +   3831555 C
e cebCap1.NW_016107707v1       312644  1 -   2086007 I
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e macNem1.NW_012011934v1       338002  0 +   2379783 C
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e calJac3.chr6              154451195  1 - 158406734 I

a score=1500.000000
s hg38.chr15_KI270851v1_alt    164409 1 +    263054 C
s panTro5.chr15              73737040 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040589 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89473 1 -    281578 C
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947630 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s otoGar3.GL873689             358085 1 +   3845361 C
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116211091 1146 + 116334831 I
e proCoq1.NW_012148396v1     13439604 0 +  16154928 C
e canFam3.chr3               59936197 0 -  91889043 C
e aotNan1.NW_018503298v1       373798 0 +   3831555 C
e cebCap1.NW_016107707v1       312644 1 -   2086007 I
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e manLeu1.NW_012102332v1       433783 75194 -   3636681 T
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e macNem1.NW_012011934v1       338002 0 +   2379783 C
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e calJac3.chr6              154451195 1 - 158406734 I
e macFas5.chr7              165571631 0 - 171882078 C

a score=1050.000000
s hg38.chr15_KI270851v1_alt    164410 1 +    263054 A
s panTro5.chr15              73737041 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040590 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89474 1 -    281578 A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947631 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165571631 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s micMur3.chr9              116212237 1 + 116334831 a
i micMur3.chr9              I 1146 C 0
s otoGar3.GL873689             358086 1 +   3845361 A
i otoGar3.GL873689          C 0 I 128
e proCoq1.NW_012148396v1     13439604 0 +  16154928 C
e canFam3.chr3               59936197 0 -  91889043 C
e aotNan1.NW_018503298v1       373798 0 +   3831555 C
e cebCap1.NW_016107707v1       312644 1 -   2086007 I
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e manLeu1.NW_012102332v1       433783 75194 -   3636681 T
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e macNem1.NW_012011934v1       338002 0 +   2379783 C
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e calJac3.chr6              154451195 1 - 158406734 I

a score=8352.000000
s hg38.chr15_KI270851v1_alt    164411 3 +    263054 CAT
s panTro5.chr15              73737042 3 -  83230942 CAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040591 3 -  99763055 CAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89475 3 -    281578 CAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947632 3 + 121039945 CAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165571632 3 - 171882078 GAt
i macFas5.chr7              C 0 C 0
s cebCap1.NW_016107707v1       312645 3 -   2086007 CAT
i cebCap1.NW_016107707v1    I 1 C 0
s micMur3.chr9              116212238 3 + 116334831 cat
i micMur3.chr9              C 0 C 0
s otoGar3.GL873689             358215 3 +   3845361 CAT
i otoGar3.GL873689          I 128 C 0
e proCoq1.NW_012148396v1     13439604 0 +  16154928 C
e canFam3.chr3               59936197 0 -  91889043 C
e aotNan1.NW_018503298v1       373798 0 +   3831555 C
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e manLeu1.NW_012102332v1       433783 75194 -   3636681 T
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e macNem1.NW_012011934v1       338002 0 +   2379783 C
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e calJac3.chr6              154451195 1 - 158406734 I

a score=13470.000000
s hg38.chr15_KI270851v1_alt    164414 8 +    263054 TTGATGA-A
s panTro5.chr15              73737045 8 -  83230942 TTGATGA-A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040594 8 -  99763055 TTGATGA-A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89478 8 -    281578 TTGATGA-A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947635 8 + 121039945 TTAATGA-A
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165571635 6 - 171882078 tt--tgt-a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       338002 8 +   2379783 TTGATGA-A
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       358589 8 -   3636681 TTGATGA-A
i manLeu1.NW_012102332v1    T 75194 C 0
s cebCap1.NW_016107707v1       312648 8 -   2086007 TTGATGA-T
i cebCap1.NW_016107707v1    C 0 C 0
s micMur3.chr9              116212241 8 + 116334831 ttgatgac-
i micMur3.chr9              C 0 C 0
s otoGar3.GL873689             358218 7 +   3845361 TTGATCA--
i otoGar3.GL873689          C 0 C 0
e proCoq1.NW_012148396v1     13439604 0 +  16154928 C
e canFam3.chr3               59936197 0 -  91889043 C
e aotNan1.NW_018503298v1       373798 0 +   3831555 C
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e calJac3.chr6              154451195 1 - 158406734 I

a score=14136.000000
s hg38.chr15_KI270851v1_alt    164422 3 +    263054 TTT
s panTro5.chr15              73737053 3 -  83230942 TTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040602 3 -  99763055 TTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89486 3 -    281578 TTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947643 3 + 121039945 TTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165571641 3 - 171882078 ttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       338010 3 +   2379783 TTT
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       358597 3 -   3636681 TTT
i manLeu1.NW_012102332v1    C 0 C 0
s cebCap1.NW_016107707v1       312656 3 -   2086007 TTT
i cebCap1.NW_016107707v1    C 0 C 0
s micMur3.chr9              116212249 3 + 116334831 ttt
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13439604 3 +  16154928 CTT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             358225 1 +   3845361 --T
i otoGar3.GL873689          C 0 C 0
e canFam3.chr3               59936197 0 -  91889043 C
e aotNan1.NW_018503298v1       373798 0 +   3831555 C
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e calJac3.chr6              154451195 1 - 158406734 I

a score=11628.000000
s hg38.chr15_KI270851v1_alt    164425 2 +    263054 TT
s panTro5.chr15              73737056 2 -  83230942 TT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040605 2 -  99763055 TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89489 2 -    281578 TT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947646 2 + 121039945 TT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165571644 2 - 171882078 tt
i macFas5.chr7              C 0 I 469
s macNem1.NW_012011934v1       338013 2 +   2379783 TT
i macNem1.NW_012011934v1    C 0 I 1
s manLeu1.NW_012102332v1       358600 2 -   3636681 TT
i manLeu1.NW_012102332v1    C 0 I 1
s calJac3.chr6              154451196 2 - 158406734 TT
i calJac3.chr6              I 1 C 0
s cebCap1.NW_016107707v1       312659 2 -   2086007 TT
i cebCap1.NW_016107707v1    C 0 C 0
s micMur3.chr9              116212252 2 + 116334831 tt
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13439607 2 +  16154928 TT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             358226 2 +   3845361 AT
i otoGar3.GL873689          C 0 C 0
e canFam3.chr3               59936197 0 -  91889043 C
e aotNan1.NW_018503298v1       373798 0 +   3831555 C
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I

a score=6006.000000
s hg38.chr15_KI270851v1_alt    164427 1 +    263054 T
s panTro5.chr15              73737058 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040607 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89491 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947648 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011934v1       338016 1 +   2379783 T
i macNem1.NW_012011934v1    I 1 C 0
s manLeu1.NW_012102332v1       358603 1 -   3636681 T
i manLeu1.NW_012102332v1    I 1 C 0
s calJac3.chr6              154451198 1 - 158406734 T
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       312661 1 -   2086007 T
i cebCap1.NW_016107707v1    C 0 C 0
s micMur3.chr9              116212254 1 + 116334831 t
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13439609 1 +  16154928 T
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             358228 1 +   3845361 T
i otoGar3.GL873689          C 0 C 0
e canFam3.chr3               59936197 0 -  91889043 C
e aotNan1.NW_018503298v1       373798 0 +   3831555 C
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e macFas5.chr7              165571646 469 - 171882078 I

a score=55918.000000
s hg38.chr15_KI270851v1_alt    164428 9 +    263054 TGTCTTTTG
s panTro5.chr15              73737059 9 -  83230942 TGTCCTTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040608 9 -  99763055 TGTCCTTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89492 9 -    281578 TGTCCTTTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947649 9 + 121039945 TGTCCTTTG
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011934v1       338017 9 +   2379783 CGTCCTTTG
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       358604 9 -   3636681 CGTTCTTTG
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154451199 9 - 158406734 TGTCCTTTG
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       312662 9 -   2086007 TGTCCTTTG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       373798 9 +   3831555 TGTCCTTTG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116212255 9 + 116334831 tgtcttttg
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13439610 9 +  16154928 TGTCTTTTG
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             358229 9 +   3845361 TTTCCTTTG
i otoGar3.GL873689          C 0 C 0
e canFam3.chr3               59936197 0 -  91889043 C
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e macFas5.chr7              165571646 469 - 171882078 I

a score=118335.000000
s hg38.chr15_KI270851v1_alt    164437 17 +    263054 TTCTTTTAAAAATCATG--
s panTro5.chr15              73737068 17 -  83230942 TTCTTTTAAAAATCATG--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040617 17 -  99763055 TTCTTTTAAAAATCATG--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89501 17 -    281578 TTCTTTTAAAAATCATG--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947658 17 + 121039945 TTCTTTTAAAAATCATG--
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011934v1       338026 17 +   2379783 TTCTTTTAAAAATTATG--
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       358613 17 -   3636681 TTCTTTTAAAAATTATG--
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154451208 17 - 158406734 TTCTTTTAAAAATCGTG--
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       312671 17 -   2086007 TTCTTTTAAACATCGTG--
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       373807 17 +   3831555 TTCTTTTAAAAATCGTG--
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116212264 17 + 116334831 ttctttCAAAAATCATG--
i micMur3.chr9              C 0 I 8
s proCoq1.NW_012148396v1     13439619 17 +  16154928 TTCTTTTAAAAATCATG--
i proCoq1.NW_012148396v1    C 0 I 2
s otoGar3.GL873689             358238 17 +   3845361 TTCTTTTAAAAATGATA--
i otoGar3.GL873689          C 0 I 2
s canFam3.chr3               59936197 19 -  91889043 CTCTTTTGAAAATCATGTG
i canFam3.chr3              C 0 C 0
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e macFas5.chr7              165571646 469 - 171882078 I

a score=18156.000000
s hg38.chr15_KI270851v1_alt    164454 5 +    263054 G-TTGG
s panTro5.chr15              73737085 5 -  83230942 A-TTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040634 5 -  99763055 A-TTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89518 5 -    281578 A-TTGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947675 5 + 121039945 G-TTGG
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011934v1       338043 5 +   2379783 G-TTAG
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       358630 5 -   3636681 G-TTAG
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154451225 6 - 158406734 GTTTAG
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       312688 5 -   2086007 G-TTAT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       373824 5 +   3831555 G-TTAG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13439638 5 +  16154928 G-TTAA
i proCoq1.NW_012148396v1    I 2 I 1
s otoGar3.GL873689             358257 5 +   3845361 A-TTAG
i otoGar3.GL873689          I 2 C 0
s canFam3.chr3               59936216 5 -  91889043 G-TTAG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116212281 8 + 116334831 I
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e macFas5.chr7              165571646 469 - 171882078 I

a score=272485.000000
s hg38.chr15_KI270851v1_alt    164459 40 +    263054 AAAGCAGAGCAT----AATTGTTCTTTATGTAGATCCCAACTGA
s panTro5.chr15              73737090 40 -  83230942 AAAGCAGAGCAT----AATTGTTTTTTATGTAGATCCCAACTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040639 40 -  99763055 AAAGCAGAGCAT----AATTGTTTTTTATGTAGATCCCAACTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89523 40 -    281578 AAAGCAGAGCAT----AATTGTTTTTTATGTAGATCCCAACTGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947680 40 + 121039945 AAAGCAGAGCAT----AATTGTTCTTTATGTAGATCCCAACTGA
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011934v1       338048 40 +   2379783 AAAGCAGAGCAT----AATTGTTCTTTATGTAGATCCCAAGTGA
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       358635 40 -   3636681 AAAGTAGAGCAT----AATTGTTCTTTATGTAGATCGCAACTGA
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154451231 40 - 158406734 AAAGCAGAGCAT----AGTTGTTCTTTATGTAGATCCCAAATGA
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       312693 40 -   2086007 AAAGCAGAGCAT----AATTGTTCTTTATGTAGATCCCAAATAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       373829 39 +   3831555 AAAGCAGATCAT----GATTGTTCTTC-TGTAGATCCCAAATGA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116212289 44 + 116334831 AAAGCAAAGCATGAAAAATTGTTCTTTATGTAGATCCCAACTGA
i micMur3.chr9              I 8 I 5011
s proCoq1.NW_012148396v1     13439644 40 +  16154928 AAAGCAAAGCAT----AATTGTTCTTTATGTAGATCCCAACTGA
i proCoq1.NW_012148396v1    I 1 C 0
s otoGar3.GL873689             358262 40 +   3845361 AAAGCAAAGCAT----AATTGTGCTTTATGTAGATTCCAACTGA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59936221 38 -  91889043 AAAGCAAAGCCT----AAT--TTTTTAATATAAGTCCCAACTGA
i canFam3.chr3              C 0 C 0
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e macFas5.chr7              165571646 469 - 171882078 I

a score=56821.000000
s hg38.chr15_KI270851v1_alt    164499 15 +    263054 TTGGGATTGTTAGGG
s panTro5.chr15              73737130 15 -  83230942 TTCGGGGTGTTAGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040679 15 -  99763055 TTCGGGGTGTTAGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89563 15 -    281578 TTCGGGGTGTTAGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70947720 14 + 121039945 TT-GGGTTGTTAGGG
i nomLeu3.chr6              C 0 M 824
s macNem1.NW_012011934v1       338088 15 +   2379783 TTGGGGTTTTTAGGG
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       358675 15 -   3636681 TTGGGGTTTTTAGGG
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154451271 15 - 158406734 CTGGGGTTTTTAGGG
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       312733 15 -   2086007 TTGGGATTTTTAGGG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       373868 15 +   3831555 TTGGGATTTTTAGGG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13439684 15 +  16154928 ATGGGATTTTGGGGG
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             358302 15 +   3845361 ATGGGGTTTTGGAGG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59936259 13 -  91889043 --ATAGTTTTTGGGG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e macFas5.chr7              165571646 469 - 171882078 I

a score=92875.000000
s hg38.chr15_KI270851v1_alt    164514 27 +    263054 AGA-----TGTTTTGGCATTCAGTAAATGTTT
s panTro5.chr15              73737145 27 -  83230942 AGA-----TATTTTGACATTCAATAAATGTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040694 27 -  99763055 AGA-----TATTTTGACATTCAATAAATGTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89578 27 -    281578 AGA-----TATTTTGACATTCAATAAATGTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s macNem1.NW_012011934v1       338103 27 +   2379783 AGA-----TTTTTTGGCATTCAGTAAATGTTT
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       358690 27 -   3636681 AGA-----TTTTTTGGCATTCAGTAAATGTTT
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154451286 32 - 158406734 AGATTTTTTTTTTTGGCATTTAGTAAATGTTT
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       312748 29 -   2086007 AGA---TTTTTTTTGGCATTTAGTAAATGTTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       373883 29 +   3831555 AGT---TGTTTTTTGGCATTTAGTAAATGTTT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13439699 27 +  16154928 ACA-----TTTTTTGGCATTAAGTAAAAGTTT
i proCoq1.NW_012148396v1    C 0 I 1553
s otoGar3.GL873689             358317 26 +   3845361 ACA------TTTTTGGCATTAAGTAAAAGTTT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59936272 22 -  91889043 --------GTCTTGAGTATTCAGTAAGTTT--
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e nomLeu3.chr6               70947734 824 + 121039945 M
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e macFas5.chr7              165571646 469 - 171882078 I

a score=2818.000000
s hg38.chr15_KI270851v1_alt    164541 1 +    263054 T
s panTro5.chr15              73737172 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040721 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89605 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s macNem1.NW_012011934v1       338130 1 +   2379783 T
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       358717 1 -   3636681 T
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154451318 1 - 158406734 T
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       312777 1 -   2086007 T
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       373912 1 +   3831555 T
i aotNan1.NW_018503298v1    C 0 I 4298
s otoGar3.GL873689             358343 1 +   3845361 C
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59936294 1 -  91889043 C
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13439726 1553 +  16154928 I
e nomLeu3.chr6               70947734 824 + 121039945 M
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e macFas5.chr7              165571646 469 - 171882078 I

a score=20679.000000
s hg38.chr15_KI270851v1_alt    164542 6 +    263054 TGTTTT
s panTro5.chr15              73737173 6 -  83230942 TGTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040722 6 -  99763055 TGTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89606 6 -    281578 TGTTCT
i gorGor5.CYUI01000141v1    C 0 C 0
s macNem1.NW_012011934v1       338131 6 +   2379783 TGTTTT
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       358718 6 -   3636681 TGTTTT
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154451319 6 - 158406734 TATTTT
i calJac3.chr6              C 0 I 1779
s cebCap1.NW_016107707v1       312778 6 -   2086007 TATTTT
i cebCap1.NW_016107707v1    C 0 I 1127
s otoGar3.GL873689             358344 6 +   3845361 TATTTT
i otoGar3.GL873689          C 0 I 1689
s canFam3.chr3               59936295 6 -  91889043 TATTTT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13439726 1553 +  16154928 I
e aotNan1.NW_018503298v1       373913 4298 +   3831555 I
e nomLeu3.chr6               70947734 824 + 121039945 M
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e macFas5.chr7              165571646 469 - 171882078 I

a score=1314.000000
s hg38.chr15_KI270851v1_alt    164548 1 +    263054 C
s panTro5.chr15              73737179 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040728 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89612 1 -    281578 C
i gorGor5.CYUI01000141v1    C 0 C 0
s macNem1.NW_012011934v1       338137 1 +   2379783 C
i macNem1.NW_012011934v1    C 0 I 82809
s manLeu1.NW_012102332v1       358724 1 -   3636681 C
i manLeu1.NW_012102332v1    C 0 I 75569
s canFam3.chr3               59936301 1 -  91889043 T
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13439726 1553 +  16154928 I
e aotNan1.NW_018503298v1       373913 4298 +   3831555 I
e otoGar3.GL873689             358350 1689 +   3845361 I
e cebCap1.NW_016107707v1       312784 1127 -   2086007 I
e nomLeu3.chr6               70947734 824 + 121039945 M
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e calJac3.chr6              154451325 1779 - 158406734 I
e macFas5.chr7              165571646 469 - 171882078 I

a score=2396.000000
s hg38.chr15_KI270851v1_alt    164549 5 +    263054 CATTA
s panTro5.chr15              73737180 5 -  83230942 CATTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040729 5 -  99763055 CATTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89613 5 -    281578 CATTA
i gorGor5.CYUI01000141v1    C 0 C 0
s canFam3.chr3               59936302 5 -  91889043 GGTTT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13439726 1553 +  16154928 I
e aotNan1.NW_018503298v1       373913 4298 +   3831555 I
e otoGar3.GL873689             358350 1689 +   3845361 I
e cebCap1.NW_016107707v1       312784 1127 -   2086007 I
e nomLeu3.chr6               70947734 824 + 121039945 M
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e manLeu1.NW_012102332v1       358725 75569 -   3636681 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e macNem1.NW_012011934v1       338138 82809 +   2379783 I
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e calJac3.chr6              154451325 1779 - 158406734 I
e macFas5.chr7              165571646 469 - 171882078 I

a score=18155.000000
s hg38.chr15_KI270851v1_alt    164554 22 +    263054 TTAAGACTATGAATATTTTATT
s panTro5.chr15              73737185 22 -  83230942 TTAAGACTATGAATATTTCATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040734 22 -  99763055 TTAAGACTATGAATATTTCATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89618 22 -    281578 TTAAGACTATGAATATTTTATT
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              165572115 22 - 171882078 TTAAAATTATGAATGTTGCATT
i macFas5.chr7              I 469 C 0
s canFam3.chr3               59936307 22 -  91889043 GGCATGTTATGTGCTTTTTATT
i canFam3.chr3              C 0 I 24766
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13439726 1553 +  16154928 I
e aotNan1.NW_018503298v1       373913 4298 +   3831555 I
e otoGar3.GL873689             358350 1689 +   3845361 I
e cebCap1.NW_016107707v1       312784 1127 -   2086007 I
e nomLeu3.chr6               70947734 824 + 121039945 M
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e manLeu1.NW_012102332v1       358725 75569 -   3636681 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e macNem1.NW_012011934v1       338138 82809 +   2379783 I
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e calJac3.chr6              154451325 1779 - 158406734 I

a score=13822.000000
s hg38.chr15_KI270851v1_alt    164576 30 +    263054 TTATTTTCTGAGACAGGGTCTCAGAATTTG
s panTro5.chr15              73737207 30 -  83230942 TTATTTTCTGAGACAGGGTCTCAGAATTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040756 30 -  99763055 TTATTTTCTGAGACAGGGTCTCAGAATTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89640 30 -    281578 TTATTTTCTGAGACAGGGTCTCAGAATTTG
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              165572137  6 - 171882078 TTTTTT------------------------
i macFas5.chr7              C 0 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13439726 1553 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e aotNan1.NW_018503298v1       373913 4298 +   3831555 I
e otoGar3.GL873689             358350 1689 +   3845361 I
e cebCap1.NW_016107707v1       312784 1127 -   2086007 I
e nomLeu3.chr6               70947734 824 + 121039945 M
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e manLeu1.NW_012102332v1       358725 75569 -   3636681 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e macNem1.NW_012011934v1       338138 82809 +   2379783 I
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e calJac3.chr6              154451325 1779 - 158406734 I

a score=2386.000000
s hg38.chr15_KI270851v1_alt    164606 4 +    263054 TCAA
s panTro5.chr15              73737237 4 -  83230942 TCAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040786 4 -  99763055 TCAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89670 4 -    281578 TCAA
i gorGor5.CYUI01000141v1    C 0 C 0
s calJac3.chr6              154453104 4 - 158406734 TCGT
i calJac3.chr6              I 1779 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13439726 1553 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e aotNan1.NW_018503298v1       373913 4298 +   3831555 I
e otoGar3.GL873689             358350 1689 +   3845361 I
e cebCap1.NW_016107707v1       312784 1127 -   2086007 I
e nomLeu3.chr6               70947734 824 + 121039945 M
e colAng1.NW_012115278v1       415756 575 -   4457520 I
e manLeu1.NW_012102332v1       358725 75569 -   3636681 I
e cerAty1.NW_012001462v1       387169 576 +   4116138 I
e macNem1.NW_012011934v1       338138 82809 +   2379783 I
e rheMac8.chr7              164250813 512 - 169600520 I
e chlSab2.chr26              53818353 525 +  58131712 I
e saiBol1.JH378292             286963 1878 -   2682657 I
e macFas5.chr7              165572143 0 - 171882078 C

a score=1679630.000000
s hg38.chr15_KI270851v1_alt    164610 250 +    263054 ATTTGTAAAATTTATAGCCAGATGTAGGGTaggggtggcctactttctgtaaagggccagatagtaaatattttaagctctcaatggaccctatggtctctgtcatagccatgggaccttgcagctgtagtgccagagtagccacagacaatactacgtcagcgggct-ggggacgttcattctgtaaac-tttatttatggacacgaaaagatgaagtccacagaatgtttgcaagtcacaaaatactgtt
s panTro5.chr15              73737241 250 -  83230942 ATATGTAAAATTTATAGCCAGATGTAGGGTgggggtggcctactttctgtaaagggccagacagtaaatattttaaggtctcagtggaccctatggtctctgtcatagccatgggaccttgcagctgtagtgccagagtagccacagaccatactacgtcagcgggca-ggggacgttcattctgtaaac-tttatttatggacacgaaaagatgaagtccacagaatgtttgcaagtcacaaaatactgtt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74040790 250 -  99763055 ATATGTAAAATTTATAGCCAGATGTAGGGTgggggtggcctactttctgtaaagggccagatagtaaatattttaaggtctcagtggaccctatggtctctgtcatagccatgggaccttgcagctgtagtgccagagtagccacagacaatactacgtcagcgggca-ggggacgttcattctgtaaac-tttatttatggacacgaaaagatgaagtccacagaatgtttgcaagtcacaaaatactgtt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89674 250 -    281578 ATATGTAAAATTTATAGCCAGATGTAGGGTaggggtggcctactttctgtaaagggccagatagtaaatattttaaggtctcagtggatcctatggtctctgtcatagccatgggaccttgcagctgtagtgccagagtagccacagacaatactacgtcagcgggca-ggggacgttcattctgtaaac-tttatttatggacacgaaaagatgaagtccacagaatgtttgcaagtcacaaaatactgtt
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164251325 250 - 169600520 ATTTGTAAAATTTATAGCCAGATGGAGGGTaggggtggcatactttctctaaagggccagatagtaaatattttaagctctcagtgaaccatatggtctctgtcatagccaggggcccttgcagctgtagtgcgaaagtagccacagacaacactacgtcagtgggca-ggggaggttcattctgtaaac-ttgatttatggacaccaaaagatgacgttcacagaatgtttgcaagtcacaaactactgtt
i rheMac8.chr7              I 512 C 0
s macFas5.chr7              165572143 250 - 171882078 ATTTGTAAAATTTATAGCCAGATGGAGGGTaggggtggcatactttctctaaagggccagatagtaaatattttaagctctcagtgaaccatatggtctctgtcatagccaggggcccttgcagctgtagtgcgaaagtagccacagacaacactacgtcagtgggca-ggggaggttcattctgtaaac-ttgatttatggacaccaaaagatgacgttcacagaatgtttgcaagtcacaaactactgtt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       420947 250 +   2379783 ATTTGTAAAATTTATAGCCAGATGGAGGGTaggggtggcatactttctctaaagggccagatagtaaatattttaagctctcagtgaaccatatggtctctgtcatagccaggggcccttgcagctgtagtgcgaaagtagccacagacaacactatgtcagtgggca-ggggaggttcattctgtaaac-ttgatttatggacaccaaaagatgacgttcacaaaatgtttgcaagtcacaaactactgtt
i macNem1.NW_012011934v1    I 82809 C 0
s cerAty1.NW_012001462v1       387745 250 +   4116138 ATTTGTAAAATTTATAGCCAGATGGAGGGTaggggtggcatactttctctaaagggccagatagtaaatattttaagctctcagtgaaccatatggtctctgtcatagccaggggcccttgcagctgtagtgcgaaagtagccacagacaacactacgtcagtgggca-ggggaggttcattctgtaaac-ttgatttatggacaccaaaagatgacgttcacagaatgtttgcaagtcacaaactactgtt
i cerAty1.NW_012001462v1    I 576 C 0
s chlSab2.chr26              53818878 250 +  58131712 ATTTGTAAAATTTATAGCCAGATGGAGGGTaggggtagcatactttctctaaagggccagatagtaaatattttaagctctcagtgaaccatatggtctctgtcatagccaggggcccttgcagctgtagtgcgaaagtagccacagacaacactacgtcagtgggca-ggggaagttcattctgtaaac-tttatttatggacaccaaaagatgacgttcacagaatgtttgcaagtcacaaaccactgtt
i chlSab2.chr26             I 525 C 0
s manLeu1.NW_012102332v1       434294 250 -   3636681 ATTTGTAAAATTTATAGCCAGATGGAGGATaggggtggcatactttctctaaagggccagatagtaaatattttaagctctcagtgaaccatatggtctctgtcatagccaggggcccttgcagctgtagtgcgaaagtagccacagacaacactacgtcagtgggca-ggggaggttcattctgtaaac-ttgatttatggacaccaaaagatgacgttcacagaatgtttgcaagtcacaaactactgtt
i manLeu1.NW_012102332v1    I 75569 C 0
s colAng1.NW_012115278v1       416331 245 -   4457520 ATTTGTAAAATTTATAGCCAGATATAGGGTaggggtggcacactttctctaaagggccagatagtcaatactttaagctctcagtggaccatatggtctctgtcatagccaggggcccttgcagctgtagtgcgaaagtagccacagacaatactgtgtcagtgggca-ggggaggttcattctgtaaac-tttatttatggacactaaaagatgacgt-----gaatgtttgcaagtcacaaactactgtt
i colAng1.NW_012115278v1    I 575 C 0
s calJac3.chr6              154453108 247 - 158406734 ATTTGTAAAATTTATAGCCGGATGTAGGGcaggggtgtcatgctttttctaaagggtcagctagtaaatattttaagctctcagtgcaccatctggtctctttcatagtcatgggaccttgcagctgtagtgccaaagcagccacagacggga----gtcactgggcagggggaagttcattttgtgaac-tttatttatggacaccaaaagatgaggttcacagaatgtttacaagccacaaaatactgtt
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       313911 246 -   2086007 ATTTGTAAAATTTATAGCCAGATGTAGGGcaggagtggcatgctttgtctaaaggtccagctagtaaatattttaagctctcagtgcaccatctggtctctgtcatagtcacgggaccttgcagctgtagtgccaaagtagccacagacggga----gtcactgggca-gaggaagttcattttgtgaac-tttatttatggacaccaaaagatgaggttcacagaatgtttacaagccacaaaatactgtt
i cebCap1.NW_016107707v1    I 1127 I 2999
s otoGar3.GL873689             360039 232 +   3845361 ATTTGTAAAATTGTTAGCATAGTATAGAGTAAGAGTggcatactttgtgtagaggactggatggtaggtattttaagcttc--gtgggccttatggcctctgtcataaccat-----------gttacattgctaaagtagcttcagacaata----gtaaacaaggatgtggctatataccaaggaaacttttattaatggacaccaataggtgaagaacacataatgtttacaagtcatgaaatatt---
i otoGar3.GL873689          I 1689 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13439726 1553 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e aotNan1.NW_018503298v1       373913 4298 +   3831555 I
e nomLeu3.chr6               70947734 824 + 121039945 M
e saiBol1.JH378292             286963 1878 -   2682657 I

a score=42053.000000
s hg38.chr15_KI270851v1_alt    164860 8 +    263054 tttctttt
s panTro5.chr15              73737491 8 -  83230942 tttctttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041040 8 -  99763055 tttctttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89924 8 -    281578 tttctttt
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164251575 8 - 169600520 ttcctttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165572393 8 - 171882078 ttcctttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       421197 8 +   2379783 ttcctttt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       387995 8 +   4116138 ttcctttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53819128 8 +  58131712 ttcctttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       434544 8 -   3636681 ttcctttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       416576 8 -   4457520 ttcctttt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154453355 8 - 158406734 tttcttct
i calJac3.chr6              C 0 C 0
s otoGar3.GL873689             360271 5 +   3845361 tttct---
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13439726 1553 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e aotNan1.NW_018503298v1       373913 4298 +   3831555 I
e cebCap1.NW_016107707v1       314157 2999 -   2086007 I
e nomLeu3.chr6               70947734 824 + 121039945 M
e saiBol1.JH378292             286963 1878 -   2682657 I

a score=72181.000000
s hg38.chr15_KI270851v1_alt    164868 10 +    263054 gattattttt
s panTro5.chr15              73737499 10 -  83230942 gattattttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041048 10 -  99763055 gattatgttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89932 10 -    281578 gattattttt
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164251583 10 - 169600520 gattattttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165572401 10 - 171882078 gattattttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       421205 10 +   2379783 gattattttt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       388003 10 +   4116138 gattattttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53819136 10 +  58131712 gattattttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       434552 10 -   3636681 gattattttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       416584 10 -   4457520 gattattttt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154453363  8 - 158406734 --tttttttt
i calJac3.chr6              C 0 I 850
s saiBol1.JH378292             288841 10 -   2682657 GATTATTTTT
i saiBol1.JH378292          I 1878 C 0
s aotNan1.NW_018503298v1       378211 10 +   3831555 gatcattttt
i aotNan1.NW_018503298v1    I 4298 C 0
s otoGar3.GL873689             360276  2 +   3845361 --------tt
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13439726 1553 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e cebCap1.NW_016107707v1       314157 2999 -   2086007 I
e nomLeu3.chr6               70947734 824 + 121039945 M

a score=55392.000000
s hg38.chr15_KI270851v1_alt    164878 8 +    263054 caattatt
s panTro5.chr15              73737509 8 -  83230942 caattatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041058 8 -  99763055 caattatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89942 8 -    281578 caattatt
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164251593 8 - 169600520 caatcatt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165572411 8 - 171882078 caatcatt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       421215 8 +   2379783 caatcatt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       388013 8 +   4116138 caatcatt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53819146 8 +  58131712 caatcatt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       434562 8 -   3636681 caatcatt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       416594 8 -   4457520 caatcatt
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             288851 8 -   2682657 CATTCATT
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       378221 8 +   3831555 caattatt
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             360278 8 +   3845361 tgattatt
i otoGar3.GL873689          C 0 I 19
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13439726 1553 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e cebCap1.NW_016107707v1       314157 2999 -   2086007 I
e nomLeu3.chr6               70947734 824 + 121039945 M
e calJac3.chr6              154453371 850 - 158406734 I

a score=1650228.000000
s hg38.chr15_KI270851v1_alt    164886 266 +    263054 aaaaactata-aaaTACGGTggctgggcgtggtggctcacacctgtaatcccagcacttttggaggctgaggcaggcg----gatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccc-catctctactgaaaac-aaaaaattagccgggcatggtgatgcacccctgtaatcccagctcctc-ggaggttgaggcatgagaatcacttgaacctgggagaatcgcttgagcctgggaggcagaggttgtggtgagc
s panTro5.chr15              73737517 266 -  83230942 aaaaactata-aaaTACGGTggccgggcgtggtggctcacacctgtaatcccagcacttttggaggccgaggcaggcg----gatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccc-catctctactaaaaac-aaaaaattagccgggcatggtgatgcacgcctgtaatcccagctcctt-gggggctgaggcacgagaatcacttgaacttgggagaatcacttgaacctgggaggcagaggttgtggtgagt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041066 266 -  99763055 aaaaactata-aaaTACGGTggctgggcgtggtggctcacacctgtaatcccagcacttttggaggccgaggcaggcg----gatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccc-catctctactaaaaac-aaaaaattagccgggcatggtgatgcacgcctgtaatcccagctcctt-gggggctgaggcacgagaatcacttgaacttgggagaatcacttgaacctgggaggcagaggttgtggtgagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        89950 266 -    281578 aaaaactata-aaatacggtggccgggcgtggtggctcacacctgtaatcccagcacttttggaggccgaggcaggcg----gatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccc-catctctactaaaaac-aaaaaattagccgggcatggtgatgcacgcctataatcccagctcctt-gggggctgaggcacgagaatcacttgaacttgggagaatcacttgaacctgggaggcagaggttgtggtgagt
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164251601 266 - 169600520 aaaaaatata-aaaTACGGTggccgggcgtggtggcttacaccagtaatcccagcactttgggaggccaaggtgggtg----gatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccc-catctctactaaaaac-aaaaaattagctgggcatgatggtgcacgcctgtaatcccagctactc-agaggctgaggcacgagaatcatttgaacccggaagaattgcctgaacctgggaggtggaggttgtggtgagc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165572419 266 - 171882078 aaaaaatata-aaaTACGGTggccgggcgtggtggcttacaccagtaatcccagcactttgggaggccaaggtgggtg----gatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccc-catctctactaaaaac-aaaaaattagctgggcatgatggtgcacgcctgtaatcccagctactc-agaggctgaggcacgagaatcatttgaacccgggagaattgcctgaacctgggaggtggaggttgtggtgagc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       421223 266 +   2379783 aaaaaatata-aaaTACGGTggccgggcgtggtggcttacaccagtaatcccagcactttgggaggccaaggtgggtg----gatcacctgaggtcaggagtttgagaccagcctggccaatatggtgaaaccc-catctctactaaaaac-aaaaaattagctgggcatgatggtgcacgcctgtaatcccagctactc-agaggctgaggcacgagaatcatttgaacccgggagaattgcctgaacctgggaggtggaggttgtggtgagc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       388021 266 +   4116138 aaaaaatata-aaaTACGGTggccgggcgtggtggcttacaccagtaatcccagcactttgggaggccaaggtgggtg----gatcacctgaggtcaggagtttgagaccagcctggccaacacggtgaaaccc-catctctactaaaaac-aaaaaattagctgggcatgatggtgcacgcctgtaatcccagctactc-agaggctgaggcacgagaatcatttgaacccgggagAATTGCCTGAATCTGGGAGGTGGAGGTTGTGGTGAGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53819154 266 +  58131712 aaaaaatata-aaaTACGGTggccgggcgtggtggcttacaccagtaatcccagcactttgggaggccgaggtgggtg----gatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccc-catctctactaaaaac-aaaaaattagctgggcatggtggtgcacgcctgtaatcccagctactc-agaggctgaggcacaagaatcatttgaacccgggagaattgcctgaacgtgggaggcggaggttgtggtgagc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       434570 266 -   3636681 aaaaaatata-aaaTACGGTggccggacgtggtggcttacaccagtaatcccagcactttgggaggccaaggtgggtg----gatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccc-catctctactaaaaac-aaaaaattagctgggcatgatggtgcacgcctgtaatcccagctactc-agaggctgaggcacgagaatcatttgaacccgggagaattgcctgaacctgggaggtggaggttgtggtgagc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       416602 267 -   4457520 aaaaaatata-aaaTACGGTGTCGgggcgtggtggctcacaccggtaatccaagcactttgggaggccgaggtgggtg----gatcatctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccc-catctctactaaaaacaaaaaaattaactgggcatgatggtgcacgcctgtaatcccagctactc-agagtctgaggcacgagaatcactttaacccgggagaattgcctgaacttgggaggcagaggttgtggtgagc
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             288859 260 -   2682657 TAAAAATATA-AAATACTATggctgggtgtgatggctcacacctgtaatctcagcactttgggaggctgaggcagttacatcgatcacctgaggccaggagttcaagaactgcctggctaacatggtgaaaccctcatctctactaaaaag-aaaaaattagctgggcatgttggtacacacttgtaatcccagctactagggggactgaggcaggagaatc------------gagaatcgcttgaacctgggtggtggaggttgtggtgagc
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       378229 257 +   3831555 taaaaatatgtaaatactatggctgggtgtgatggctcacagctgtaatctcagcactttgggaggctgaggcaggtg----ggtcacctgaggccaggagttcaagaactgcctgaccaacatggtgaaaccctcatctctactaaaaag-aaaaaattatctgagcatggtggtacacgcttgtaatcccagctacttgggaggctgaggcaggagaatc------------gagaatcgcttaaacctgggtggtggaggttgtggtgagc
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13439726 1553 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e otoGar3.GL873689             360286  19 +   3845361 I
e cebCap1.NW_016107707v1       314157 2999 -   2086007 I
e nomLeu3.chr6               70947734 824 + 121039945 M
e calJac3.chr6              154453371 850 - 158406734 I

a score=56317.000000
s hg38.chr15_KI270851v1_alt    165152 10 +    263054 caagaCTC--CA
s panTro5.chr15              73737783 10 -  83230942 caagaCTC--TG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041332 10 -  99763055 caagaCTC--TG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        90216  8 -    281578 caagact----g
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164251867 10 - 169600520 caagaCTC--TG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165572685 10 - 171882078 caagaCTC--TG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       421489 10 +   2379783 caagaCTC--TG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       388287 10 +   4116138 CAAGACTC--TG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53819420 10 +  58131712 caagaCTC--TG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       434836 10 -   3636681 caagaCTC--TG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       416869 10 -   4457520 caagaCTC--TG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154454221 10 - 158406734 cgaaactc--cg
i calJac3.chr6              I 850 C 0
s saiBol1.JH378292             289119 12 -   2682657 caagaCTCTATG
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       378486 12 +   3831555 caagaCTCTATG
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13439726 1553 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e otoGar3.GL873689             360286 19 +   3845361 I
e cebCap1.NW_016107707v1       314157 2999 -   2086007 I
e nomLeu3.chr6               70947734 824 + 121039945 M

a score=136010.000000
s hg38.chr15_KI270851v1_alt    165162 20 +    263054 TCTCAAAAGAACAACAAAAC---
s panTro5.chr15              73737793 20 -  83230942 TCTCAAAAGAACAACaaaag---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041342 20 -  99763055 TCTCAAAAGAACAACaaaag---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        90224 20 -    281578 tctcaaaagaacaacaaaag---
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70948558 19 + 121039945 TCTCAAAAGAAC-ACaaaag---
i nomLeu3.chr6              M 824 C 0
s rheMac8.chr7              164251877 20 - 169600520 TCTCAAAAGAACAACAAAAG---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165572695 20 - 171882078 TCTCAAAAGAACAACaaaag---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       421499 20 +   2379783 TCTCAAAAGAACAACAAAAG---
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       388297 20 +   4116138 TCTCAAAAGAACAACAAAAG---
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53819430 20 +  58131712 TCTCAAAAGAACAagaaaag---
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       434846 20 -   3636681 TCTCGAAAGAACAACAAAAG---
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       416879 20 -   4457520 TCTCAAAAGAACAACAAAAG---
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154454231 18 - 158406734 tctcaaaaaaaaaaaaaG-----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             289131 19 -   2682657 TCTCAAAAAAAAaaaaaga----
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       378498 23 +   3831555 TCTCAAAAAAAAAAAAaaaaatg
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13439726 1553 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e otoGar3.GL873689             360286 19 +   3845361 I
e cebCap1.NW_016107707v1       314157 2999 -   2086007 I

a score=599696.000000
s hg38.chr15_KI270851v1_alt    165182 113 +    263054 TAAAATACTTTCTCTGTGTTcagaccatacacaaaaaggctgtgggctgggtttgtcctg-tgggctgtggttAGTGACcacaca------------------------------cacacacacaca------------------------------------------------------------------------cacacacacacacacac
s panTro5.chr15              73737813 120 -  83230942 taaaatactttccctgttttcagaccatacacaaagaggctgtgggctgggtttgtcctg-tgggctgtggttagtgaccccCCC--ACCGC---------------------CTCCCCCCCACTCC------------------------------------------------------------------------CCCCCACACACACGTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041362 120 -  99763055 taaaatactttccctgttttcagaccatacacaaagaggctgtgggctgggtttgtcctg-tgggctgtggttagtgaccccCCC--ACCGC---------------------CTCCCCCCGACTCC------------------------------------------------------------------------CCCTCACACACACGTAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        90244 127 -    281578 taaaatactttccctgttttcagaccatacacaaagaggctgtgggctgggtttgtcctg-tgggctgtggttagtgaccccCCT-CACCGC---------------------CTCCCCCCcacccccacaca------------------------------------------------------------------cacacacacacacGTAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70948577 137 + 121039945 taaaatactttctctgctttcagaccatacacaatgaggctgtgggctgggtttggcccc-tgggctgtgattAGTGCTCCCCCTCCCCCGC------------GGGCGCGcacacacacacacacacacaca------------------------------------------------------------------cacacacacacacGTAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164251897 123 - 169600520 taaaatactttctttcctttcagaccatacagaaagaggctgtggactgggtttggcccc-tgggctgtggttAGTGACcacaca----------------------------cacacacgcacacatacacacg----------------------------------------------------------------tgcacacatacaTGTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165572715 123 - 171882078 taaaatactttctttcctttcagaccatacagaaagaggctgtggactgggtttggcccc-tgggctgtggttAGTGACcacaca----------------------------cacacacgcacacatacacacg----------------------------------------------------------------tgcacacatacaTGTAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       421519 124 +   2379783 taaaatactttctttcctttcagaccatacagaaagaggctgtggactgggtttggccccgtgggctgtggttAGTGACcacaca----------------------------cacacacgcacacatacacacg----------------------------------------------------------------tgcacacatacaTGTAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       388317 123 +   4116138 taaaatactttctttcctttcagaccatacagaaagaggctgtggactgggtttggcccc-tgggctgtggttAGTGACcacaca----------------------------cacacacgcacacatacacaca----------------------------------------------------------------tgcacacatacaTGTAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53819450 123 +  58131712 taaaatactttctttcctttcagaccatacagaaagaggctgtggactgggtttggcccc-tgggctgtggttAGTGACcacaca----------------------------tacacacgcacacatacacaca----------------------------------------------------------------tgcacacatacaTGTAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       434866 123 -   3636681 taaaatactttctttcctttcagaccatacagaaagaggctgtggactgggtttggcccc-tgggctgtggttAGTGACcacaca----------------------------cacacacgcacacatacacaca----------------------------------------------------------------tgcacacatacaTGTAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       416899 137 -   4457520 taaaatactttctttcctttcaggccatacagaaagaggctgtggactgggtttggcccc-tgggctgtggttAGTGACcacaca----------------------------cacacacgcacacacacacacgcacac----------------------------------------------aTACT----CACATGCACACATACATGTAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154454249 214 - 158406734 TGAAATGATttctttgctttcagatcatacacaaacaggctgtgggctggatttggcccg-tgggctgtggtGAGTGACCACATA-CATATCGGGAAGCGTCTGGGGCTATGGTGAGTGACCACACATACATAGGGCAGCGTCTGGGGCTGTGGTGAGTGACCACACACACCTAGGGCAGCATCTGGGGCTGTGGTGAGTGACCACACACACATAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             289150  91 -   2682657 tgaaatactttgtttgctttcagctcatacagaaacaggctgtgggctggatttggcccc-t----------------------------------------------------------------------------------------------------------------------------gggctgttgtGAGTGACCACACGCAGGTAG
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       378521  91 +   3831555 tgaaatactttctttgctttcacatcatacacaaacaggctgtgggctgggtttggcccc-t----------------------------------------------------------------------------------------------------------------------------aggctgtggtGAGTGACCACGCACACATAG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             360305  71 +   3845361 taaactcctttctttgcatttggagtacacatga-cagtctgcaggctggattgggcgcc-tggactgtGTAT-----------------------------------------------------------------------------------------------------------------------------------------------
i otoGar3.GL873689          I 19 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13439726 1553 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e cebCap1.NW_016107707v1       314157 2999 -   2086007 I

a score=594601.000000
s hg38.chr15_KI270851v1_alt    165295 58 +    263054 GGCAGAGTCTGGCATTCAGAGCCAGCACCTGTGTTCTCACCTGAG-CCGTGTTCCTGGC
s panTro5.chr15              73737933 58 -  83230942 GACAGAGTCTGGCCTTTAGAACCAGCACCTGTGTTCTCACCTGAG-CTGTGTTCCTGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041482 58 -  99763055 GACAGAGTCTGGCCTTTAGAACCAGCACCTGTGTTCTCACCTGAG-CTGTGTTCCTGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        90371 58 -    281578 GACAGAGTCTGGTCTTTAGAACTAGCACCTGTGTTCTCACCTGAG-CTGTGTTCCTGGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70948714 55 + 121039945 GGCAGAGTCTGGCATTTACAGCCAGCACCTGTGTTCT---CTGAG-CTGTCTTCCTGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164252020 58 - 169600520 TGCAGAGTCTGGCATTTAGTGCCAGCACCTGTGTTCTTACCTGAG-CTGTGTTCCTGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165572838 58 - 171882078 TGCAGAGTCTGGCATTTAGTGCCAGCACCTGTGTTCTTACCTGAG-CTGTGTTCCTGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       421643 58 +   2379783 TGCAGAGTCTGGCATTTAGTGCCAGCACCTGTGTTCTTACCTGAG-CTGTGTTCCTGGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       388440 58 +   4116138 TGCAGAGTCTGGCATTTAGTGCCAGCACCTGTGTTCTCACCTGAG-CTGTGTTCCTGGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53819573 58 +  58131712 TGCAGAGTCTGGCATTGAGTGCCAGCACCTGTGTTCTCACCTGAG-CTGTGTTCCTGGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       434989 58 -   3636681 TGCAGAGTCTGGCATTTAGTGCCAGCACCTGTGTTCTCACCTGAG-CTGTGTTCCTGGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       417036 58 -   4457520 TGCAGAGTCTGGCATTTAGTGCCAGCACCTGTGTTCTCACCTGAG-CTGTGTTCCTGGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154454463 58 - 158406734 GGCAGCGTCTGGCATTTAGAGCCAGCACCTGTGTTCTCACCTCAG-CTGTGTCCCTGGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             289241 58 -   2682657 GGCAGAGTCTGGCTTTTAGAGCCCGCACCTGTGTTCTCACCTGAG-CTGTGTTCCTGGC
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       378612 58 +   3831555 GGCAGAGTGTGGCATTTAGAGCCAGCCCCTGTGTTCTCACCTGAG-CTGTGTTCCTGGC
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13441279 59 +  16154928 GGCAGAGTCTGACATTTAGAGCCAACACTTGAGTTGTCACCTGAGTCCgtgttcttggc
i proCoq1.NW_012148396v1    I 1553 I 1411
s otoGar3.GL873689             360376 59 +   3845361 GGTTGAGTCTGCCATTTAGAAGCAATACTTGTGTTGTCACCAGAGTCTGTGTTCCTGGC
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e canFam3.chr3               59936329 24766 -  91889043 I
e cebCap1.NW_016107707v1       314157 2999 -   2086007 I

a score=196894.000000
s hg38.chr15_KI270851v1_alt    165353 25 +    263054 TGGGTTCTACTCTGTATTCTGTGAC
s panTro5.chr15              73737991 25 -  83230942 TGGGTTCTACTCTGTATTCTGTGAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041540 25 -  99763055 TGGGTTCTACTCTGTATTCTGTGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        90429 25 -    281578 TGGGTTCTATTCTGTATTCTGTGAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70948769 25 + 121039945 CGGGTTCTACTCTGTATTCTGTGAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164252078 25 - 169600520 TGGGTTCTGCTCTGTATtctgtgat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165572896 25 - 171882078 TGGGTTCTGCTCTGTATtctgtgat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       421701 25 +   2379783 TGGGTTCTGCTCTGTATtctgtgat
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       388498 25 +   4116138 TGGGTTCTGCTCTGTATtctgtgat
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53819631 25 +  58131712 TGGGTTCTACTCTGTATtctgtgat
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       435047 25 -   3636681 TGGGTTCTGCTCTGTATTTTGTGAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       417094 25 -   4457520 TGGGTTCTACTCTGTGTTCTGTGAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154454521 17 - 158406734 TGGGTTCTACTCTGTAT--------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             289299 17 -   2682657 TGGGTTCTGctctgtat--------
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       378670 25 +   3831555 TGGGTTCTGCTCTGTATTCTGTGAC
i aotNan1.NW_018503298v1    C 0 I 1685
s otoGar3.GL873689             360435 22 +   3845361 CAGGACCTACTCTGTCAGCTGT---
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13441338 1411 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e cebCap1.NW_016107707v1       314157 2999 -   2086007 I

a score=213440.000000
s hg38.chr15_KI270851v1_alt    165378 27 +    263054 TCGAGGTGTCTACCTTGGTAAACTGGA
s panTro5.chr15              73738016 27 -  83230942 CCAAGGTGTCTACCTTGGTAAACTGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041565 27 -  99763055 CCAAGGTGTCTACCTTGGTAAACTGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        90454 27 -    281578 CCAAGGTGTCTACCTTGGTAAACTGAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70948794 27 + 121039945 CTGAGGTGTCTACCTTGGTAAACTGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164252103 27 - 169600520 cccaggtgtctaccttggtaaactgga
i rheMac8.chr7              C 0 I 764
s macFas5.chr7              165572921 27 - 171882078 cccaggtgtctaccttggtaaactgga
i macFas5.chr7              C 0 I 764
s macNem1.NW_012011934v1       421726 27 +   2379783 cccaggtgtctaccttggtaaactgga
i macNem1.NW_012011934v1    C 0 I 764
s cerAty1.NW_012001462v1       388523 27 +   4116138 cccaggtgtctaccttggtaaactgga
i cerAty1.NW_012001462v1    C 0 I 763
s chlSab2.chr26              53819656 27 +  58131712 cccaggtgtctaccttggtaaactgga
i chlSab2.chr26             C 0 I 3497
s manLeu1.NW_012102332v1       435072 27 -   3636681 CCCAGGTGTCTACCTTGGTAAACTGGA
i manLeu1.NW_012102332v1    C 0 I 763
s colAng1.NW_012115278v1       417119 27 -   4457520 CCCAGATGTCTACCTTGGTAAACTGGA
i colAng1.NW_012115278v1    C 0 I 763
s calJac3.chr6              154454538 19 - 158406734 --------TCTACTTTGGTAAACTGGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             289316 19 -   2682657 --------tctaccttggtaaactgga
i saiBol1.JH378292          C 0 C 0
s otoGar3.GL873689             360457 23 +   3845361 ----GGAGTCTGCCTTGGTAAACTGTA
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13441338 1411 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e aotNan1.NW_018503298v1       378695 1685 +   3831555 I
e cebCap1.NW_016107707v1       314157 2999 -   2086007 I

a score=28085.000000
s hg38.chr15_KI270851v1_alt    165405 3 +    263054 ggc
s panTro5.chr15              73738043 3 -  83230942 ggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041592 3 -  99763055 ggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        90481 3 -    281578 ggc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70948821 3 + 121039945 ggc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164252894 3 - 169600520 ggc
i rheMac8.chr7              I 764 C 0
s macFas5.chr7              165573712 3 - 171882078 ggc
i macFas5.chr7              I 764 C 0
s macNem1.NW_012011934v1       422517 3 +   2379783 ggc
i macNem1.NW_012011934v1    I 764 C 0
s cerAty1.NW_012001462v1       389313 3 +   4116138 ggc
i cerAty1.NW_012001462v1    I 763 C 0
s chlSab2.chr26              53823180 3 +  58131712 ggc
i chlSab2.chr26             I 3497 C 0
s manLeu1.NW_012102332v1       435862 3 -   3636681 ggc
i manLeu1.NW_012102332v1    I 763 C 0
s colAng1.NW_012115278v1       417909 3 -   4457520 ggc
i colAng1.NW_012115278v1    I 763 C 0
s calJac3.chr6              154454557 3 - 158406734 GAC
i calJac3.chr6              C 0 I 20133
s saiBol1.JH378292             289335 3 -   2682657 ggc
i saiBol1.JH378292          C 0 I 1161
s otoGar3.GL873689             360480 3 +   3845361 GAC
i otoGar3.GL873689          C 0 I 7838
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13441338 1411 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e aotNan1.NW_018503298v1       378695 1685 +   3831555 I
e cebCap1.NW_016107707v1       314157 2999 -   2086007 I

a score=6006.000000
s hg38.chr15_KI270851v1_alt    165408 1 +    263054 t
s panTro5.chr15              73738046 1 -  83230942 t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041595 1 -  99763055 t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        90484 1 -    281578 t
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70948824 1 + 121039945 t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164252897 1 - 169600520 t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165573715 1 - 171882078 t
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       422520 1 +   2379783 t
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       389316 1 +   4116138 t
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53823183 1 +  58131712 t
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       435865 1 -   3636681 t
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       417912 1 -   4457520 t
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13441338 1411 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e aotNan1.NW_018503298v1       378695 1685 +   3831555 I
e otoGar3.GL873689             360483 7838 +   3845361 I
e cebCap1.NW_016107707v1       314157 2999 -   2086007 I
e saiBol1.JH378292             289338 1161 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=691055.000000
s hg38.chr15_KI270851v1_alt    165409 108 +    263054 gttttagtttgcattcccgctgacaatctgtcacgtttctgttgctctgtgtctttgttagcacttggtgttatcagtgatttttagttgagcca-ttctaacaagtct
s panTro5.chr15              73738047 108 -  83230942 gttttagtttgcattcccactggcaatctgtaacatttctcttggtctgtgtctttgttagcacttggtattatcagtgttgtttagttgagcca-ttctaacaagtct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041596 108 -  99763055 gttttagtttgcattcccactggcaatctgtaacatttctcttggtctgtgtctttgttagcacttggtattatcagtgttgtttagttgagcca-ttctaacaagtct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        90485 109 -    281578 gttttagtttgcattcccactggcaatctgtaacatttctcttggtctgtgtctttgttagcacttggtgttatcagtgttttttagttgagccatttctaacaagtct
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70948825 108 + 121039945 gttttagtttgcattcccactggcaatctgtcacgtttctgttgctctgtgtctttgttagcacttggtgttatcagtgttttttagttgagcca-ttctagcaagtct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164252898 108 - 169600520 gttttagtttgcattcccactggcaatctgtcatgtttctgttgctttgtgtctttgttagctcttggtgttatcagtgatttttagttgagcca-ttctaacaagtct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165573716 108 - 171882078 gtttttgtttgcattcccactggcaatctgtcatgtttctgttgctttgtgtctttgttagctcttggtgttatcagtgatttttagttgagcca-ttctaacaagtct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       422521 108 +   2379783 gttttagtttgcattcccactggcaatctgtcatgtttctgttgctttgtgtctttgttagctcttggtgttatcagtgatttttagttgagcca-ttctaacaagtct
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       389317 108 +   4116138 gttttagtttgcattcccactggcaatctgtcatgtttctgttgctttgtgtctttgttagctcttggtgttatcagtgatttttagttgagcca-ttctaacaagtct
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53823184 108 +  58131712 gttttagtttgcattcccactggcaatctgtcatgtttctgttgctttgtgtctttgttagctcttggtgttatcagtgattttttgttgagcca-ttgtaacaagtct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       435866 108 -   3636681 gttttagtttgcattcccactggcaatctgtcatgtttctgttgctttgtgtctttgttagctcttggtgttatcagtgatttttagttgagcca-ttctaacaagtct
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       417913 108 -   4457520 gttttagtttgcattcccactggcaatctgtcatgtttctgttgctttgtgtctttgttagctcttggtgttatcagtgatttttagttaagcca-ttctaacaagtct
i colAng1.NW_012115278v1    C 0 C 0
s aotNan1.NW_018503298v1       380380 106 +   3831555 gttttagtttgcattcccactggcaatctgtgatgtttctgttgtact-tgcctttgtcag-acttggtgttatcagtgttttttagtttggtca-ttctaacaagtct
i aotNan1.NW_018503298v1    I 1685 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e proCoq1.NW_012148396v1     13441338 1411 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e otoGar3.GL873689             360483 7838 +   3845361 I
e cebCap1.NW_016107707v1       314157 2999 -   2086007 I
e saiBol1.JH378292             289338 1161 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=465436.000000
s hg38.chr15_KI270851v1_alt    165517 69 +    263054 agtgggatctcattgtggttttaatttgcaattctgtaatggctaacaatgctgaata-----tcatgttcttt
s panTro5.chr15              73738155 69 -  83230942 agtgggatctcattgtggttttaatttgcaattctgtaatggctaacaatgctgaata-----tcatgttattt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041704 69 -  99763055 agtgggatctcattgtggttttaatttgcaattctgtaatggctaacaatgctgaata-----tcatgttcttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        90594 69 -    281578 agtgggatctcattgtggttttaatttgcaattctgtaatggctaacaatgctgaata-----tcatgttcttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70948933 69 + 121039945 agtgggatttcattgtggttttaatatgcaattctgtaatggctaacgatgctgaata-----tcatgttcttc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164253006 66 - 169600520 agtgggatctcattgtggtttaaatttgcatttccgtaatggctaatgatgctgaata-----tcatgttc---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165573824 66 - 171882078 agtgggatctcattgtggtttaaatttgcatttccgtaatggctaatgatgctgaata-----tcatgttc---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       422629 66 +   2379783 agtgggatctcattgtggtttaaatttgcatttccgtaatggctaatgatgctgaata-----tcatgttc---
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       389425 66 +   4116138 agtgggatctcattgtggtttaaatttgcatttccgtaatggctaatgatgctgaata-----tcatgttc---
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53823292 66 +  58131712 agtgggatctcattgtggtttaaatttgcatttccgtaatggctaatgatgttgaata-----tcatgttc---
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       435974 66 -   3636681 agtgggatctcattgtggtttaaatttgcatttccgtaatggctaatgatgctgaata-----tcatgttc---
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       418021 66 -   4457520 agtgggatctcattgtggtttaaatttgcatttccgtaacggctaatgatgctgaata-----tcatgttc---
i colAng1.NW_012115278v1    C 0 C 0
s aotNan1.NW_018503298v1       380486 74 +   3831555 agtgggagttcgttgtgattttaatttgcatttccataatggctaacaatgctgaatatcttttcatgttcttc
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13442749 74 +  16154928 agtgggatcttattgtggttttagtttgcatttccttaatggctaatgatgttgaatctcttttcatgttcttg
i proCoq1.NW_012148396v1    I 1411 C 0
e micMur3.chr9              116212333 5011 + 116334831 I
e canFam3.chr3               59936329 24766 -  91889043 I
e otoGar3.GL873689             360483 7838 +   3845361 I
e cebCap1.NW_016107707v1       314157 2999 -   2086007 I
e saiBol1.JH378292             289338 1161 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=95278.000000
s hg38.chr15_KI270851v1_alt    165586 10 +    263054 tttgccactc
s panTro5.chr15              73738224 10 -  83230942 tttgccactc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041773 10 -  99763055 tttgccactc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        90663 10 -    281578 tttgccactc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70949002 10 + 121039945 tttgccactc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164253072 10 - 169600520 tttgccactc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165573890 10 - 171882078 tttgccactc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       422695 10 +   2379783 tttgccactc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       389491 10 +   4116138 tttgccactc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53823358 10 +  58131712 tttgccactc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       436040 10 -   3636681 tttgccactc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       418087 10 -   4457520 tttgccactc
i colAng1.NW_012115278v1    C 0 C 0
s aotNan1.NW_018503298v1       380560 10 +   3831555 tttgccactc
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116217344 10 + 116334831 tttgccaccc
i micMur3.chr9              I 5011 C 0
s proCoq1.NW_012148396v1     13442823 10 +  16154928 tttgccatcc
i proCoq1.NW_012148396v1    C 0 C 0
e canFam3.chr3               59936329 24766 -  91889043 I
e otoGar3.GL873689             360483 7838 +   3845361 I
e cebCap1.NW_016107707v1       314157 2999 -   2086007 I
e saiBol1.JH378292             289338 1161 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=131094.000000
s hg38.chr15_KI270851v1_alt    165596 15 +    263054 ttgtatcctctgtg-a
s panTro5.chr15              73738234 15 -  83230942 ttgtatcctctgtg-a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041783 15 -  99763055 ttgtatcctctgtg-a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        90673 15 -    281578 ttgtatcctctgtg-a
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70949012 16 + 121039945 ttgtatcctttgtgaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164253082 16 - 169600520 ttgtatcctctgtgaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165573900 16 - 171882078 ttgtatcctctgtgaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       422705 16 +   2379783 ttgtatcctctgtgaa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       389501 16 +   4116138 ttgtatcctctgtgaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53823368 16 +  58131712 ttgtatcctctgtgaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       436050 16 -   3636681 ttgtatcctctgtgaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       418097 16 -   4457520 ttgtatcctctgtgaa
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       317156 16 -   2086007 ttgcatCCTCTGTGCA
i cebCap1.NW_016107707v1    I 2999 C 0
s aotNan1.NW_018503298v1       380570 16 +   3831555 ttgtatcctctgtgca
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116217354 15 + 116334831 ttgtatcctctgtgg-
i micMur3.chr9              C 0 I 4
s proCoq1.NW_012148396v1     13442833 15 +  16154928 ttgtatcctctgtgg-
i proCoq1.NW_012148396v1    C 0 I 4
e canFam3.chr3               59936329 24766 -  91889043 I
e otoGar3.GL873689             360483 7838 +   3845361 I
e saiBol1.JH378292             289338 1161 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=460179.000000
s hg38.chr15_KI270851v1_alt    165611 42 +    263054 gtttctgttcagatcttttgcacaGAAAAAGCTGTATCATGG
s panTro5.chr15              73738249 42 -  83230942 gtttctgttcagatcttttgTACAGAAAAAGCTGTATCATGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041798 42 -  99763055 gtttctgttcagatcttttgcacaGAAAAAGCTGTATCATGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        90688 42 -    281578 gtttctgttcagatcttttgcacaGAAAAAACTGTATCATGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70949028 42 + 121039945 gtttctgttcagatcttttgcacaGAAAAAACTGTATCTTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164253098 42 - 169600520 gtttctgttcagatcttttgcacaGAAGCAGCTGTATCATGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165573916 42 - 171882078 gtttctgttcagatcttttgcacaGAAGCAGCTGTATCATGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       422721 42 +   2379783 gtttctgttcagatcttttgcacaGAAGCAGCTGTATCATGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       389517 42 +   4116138 gtttctgttcagatcttttgcacaGAAGCAGCTGTATCATGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53823384 42 +  58131712 gtttctgttcagatcttttgcacaGAAGAAGCTGTATCATGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       436066 42 -   3636681 gtttctgttcagatcttttgcacaGAAGCAGCTGTATCATGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       418113 42 -   4457520 gtttctgttcagatcttttgcacaGAAGAAGCTGTATCATGG
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       317172 42 -   2086007 GTTTCTGTTCAGATTTTTTGCACAGAAAAAGCTGTATCATAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       380586 42 +   3831555 gtttctgttcagattttttgcacaGAAAAAGCTGTATCATAG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116217373 42 + 116334831 gtttctgtttaaatcttttgcATAGAGAAAGCTGTATCATGG
i micMur3.chr9              I 4 C 0
s proCoq1.NW_012148396v1     13442852 42 +  16154928 atttctgtttaaatcttttgcATAGAAAATGCTGTATCATGG
i proCoq1.NW_012148396v1    I 4 C 0
s otoGar3.GL873689             368321 42 +   3845361 GTTTCTGTTTAAATTTTTGACGCAGAAAAACGTGTATCTTGG
i otoGar3.GL873689          I 7838 C 0
e canFam3.chr3               59936329 24766 -  91889043 I
e saiBol1.JH378292             289338 1161 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=455926.000000
s hg38.chr15_KI270851v1_alt    165653 42 +    263054 AACCAGTAAAATAACCAAGGAGAGGTTGATTAAAG-----TTCTGTT
s panTro5.chr15              73738291 42 -  83230942 AACCAGTAAAATAACCAAGGAGAGGTTGATTAAAG-----TTCTGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041840 42 -  99763055 AACCAGTAAAATAACCAAGGAGAGGTTGATTAAAG-----TTCTGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        90730 42 -    281578 AACCAGTAAAATAACCAAGGAGAGGTTGATTCAAG-----TTCTGTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70949070 42 + 121039945 AACCAGTAAAATAACCAAGGAGAGGTTGATTAAAG-----TTCTGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164253140 42 - 169600520 AACCAGTAAAATAACCAAGGAGAGGTTGATTAAAG-----TTCTGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165573958 42 - 171882078 AACCAGTAAAATAACCAAGGAGAGGTTGATTAAAG-----TTCTGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       422763 42 +   2379783 AACCAGTAAAATAACCAAGGAGAGGTTGATTAAAG-----TTCTGTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       389559 42 +   4116138 AACCAGTAAAATAACCAAGGAGAGGTTGATTAAAG-----TTCTGTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53823426 42 +  58131712 AACCAGTAAAATAACCAAGGAGAAGTTGATTAAAG-----TTCTGTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       436108 42 -   3636681 AACCAGTAAAATAACCAAGGAGAGGTTGATTTAAG-----TTCTGTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       418155 42 -   4457520 AACCAGTAAAATAACCAAGGAGAGGTTGATTAAAG-----TTCTGTT
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             290499 47 -   2682657 AACCAGTAAAATAGCCAAGGAAAGGTCGGTTAAAGCTCTCTTCTGTT
i saiBol1.JH378292          I 1161 C 0
s cebCap1.NW_016107707v1       317214 36 -   2086007 AACCAGTAAAATAGCCAAGG-----------AAAGCTCTGTTCTGTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       380628 47 +   3831555 AACCAGTAAAATAGCCAAGGAAAGGTCAGTTAAAGCTCTGTTGTGTT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116217415 42 + 116334831 AACTAGTTAAATAGCCAAGGAGAAGTTAGTTAAAG-----CTCTGTT
i micMur3.chr9              C 0 I 5
s proCoq1.NW_012148396v1     13442894 42 +  16154928 AACTAGTTAAATAGCCAAAGAGAAGTTAGTTAAAG-----CTCTGTT
i proCoq1.NW_012148396v1    C 0 I 6756
s otoGar3.GL873689             368363 36 +   3845361 AACTGCTTAAATAGCCAAGGAGAAGTT------AG-----CTCTATT
i otoGar3.GL873689          C 0 I 9
e canFam3.chr3               59936329 24766 -  91889043 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=923566.000000
s hg38.chr15_KI270851v1_alt    165695 91 +    263054 TATAACCCTAGAAgattcctgccctagggatatggga-tggctgaacgtaggaca-ccgacactggacagatgaaatagcagtttattagtca
s panTro5.chr15              73738333 91 -  83230942 TATAACCCTAGAAgattcctgccctagggatatggga-tggctgaacgtaggaca-ctgacactggacagatgaaatagcagtttattagtca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041882 91 -  99763055 TATAACCCTAGAAgattcctgccctagggatatggga-tggctgaacgtaggaca-ctgacactggacagatgaaatagcagtttattagtca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        90772 91 -    281578 TATAACCCTAGAAgattcctgccctagggatatggga-tggctgaacgtaggaca-ctgacactggacagatgaaatagcagtttattagtca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70949112 91 + 121039945 TATAACCCTAGAAgattcctgccctagggatatggga-tggctgaacataggaca-ccgacactggacagatgaaatagcagtttattagtca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164253182 91 - 169600520 TATAACCCTAGAAgattcctgccctagggatatggga-tggctgaacataggaca-ccgacactggacagatgaaatagcagtttattagtga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165574000 91 - 171882078 TATAACCCTAGAAgattcctgccctagggatatggga-tggctgaacataggaca-ccgacactggacagatgaaatagcagtttattagtga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       422805 91 +   2379783 TATAACCCCAGAAgattcctgccctagggatatggga-tggctgaacataggaca-ccgacactggacagatgaaatagcagtttattagtca
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       389601 91 +   4116138 TATAACCCTAGAAgattcctgccctagggatatggga-tggctgaacataggaca-ctgacactggacagatgaaatagcagtttattagtca
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53823468 91 +  58131712 TATAACCCTAGAAgattcctgccctagggatatggga-tggctgaacataggaca-ctgacactggacagatgaaatagcagtttattagtca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       436150 91 -   3636681 TATAACCCTAGAAgattcctgccctagggatatggga-tggctgaacataggaca-ctgacactggacagatgaaatagcagtttattagtca
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       418197 91 -   4457520 TATAACCCTAGAAgattcctgccctagggatatggga-tggctgaacataggaca-ctgacactggacagatgaaatagccgtttattagtca
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             290546 83 -   2682657 TATGACCCTAGAggagtcctgccctagggatatgggc-tggctgaacacaggacg-cttgctttggacagatgaaatagc--------agtca
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       317250 83 -   2086007 TATAACCCTAGAAgatttctgccctaggaatatgggc-tggctgaacacaggacg-ctagcactggacagatgaaatagc--------agtca
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       380675 83 +   3831555 TATAACCCTAGAAgattcctgccctagggatatgggt-tggctgaacacaggacg-ctagcactggacagatgaaatagc--------agtca
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116217462 93 + 116334831 TATAACCCTAGgggattcctgtgctagggtcatggggttggctgaacacatgacacctggtgctggacagatgagataacagcttattagtca
i micMur3.chr9              I 5 I 5564
s otoGar3.GL873689             368408 90 +   3845361 AATAACCCTAGgggattcctgtgctgggcttatgggaatggctgaa-atgcaactcctgactctgg--agatgaaacagcagcttgttagtga
i otoGar3.GL873689          I 9 C 0
e proCoq1.NW_012148396v1     13442936 6756 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=2529440.000000
s hg38.chr15_KI270851v1_alt    165786 298 +    263054 cgcatgctcacagccct-ggggtgg--gggacaccgcatgccacacg-------ggggctgcacttgggaacagagcgaaccacgaggggctgtgggaggcacatt----ttgtagtaacaggagggtgagatgaccttgctt-ccatgggaagatgtgactggcttgtttgaataactctggg--ccggcag--------------------ggatgagcaggctggggtcgggtttccgcgataagga-ggttgtttggctttgggatcttatccgtgagagcagagctcaggggagaccttgtggttaggctatttgaggccttcttgatttt
s panTro5.chr15              73738424 300 -  83230942 tgcatgctcacagccctgggggtgg--gggacactgcatgccacatg-------ggggctgcacttgggaacagagtgaaccacgaggagctgtgggaggcacatt----ttgtagtaagaacagggtgaggtgaccttgcttcccatgggaagatgtgactggcttgtttgaataactctggg--ccggcag--------------------ggatgagcaggctggggtcgggtctccgcgataagga-ggttgtttggctttgggatcttatccgtgagagcagagctcaggggagaccttgtggttaggctatttgaggccttcttgatttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74041973 300 -  99763055 tgcatgctcacagccctgggggtgg--gggacactgcatgccacatg-------ggggctgcacttgggaacagagtgaaccacgaggagctgtgggaggcacatt----ttgtagtaagaacagggtgaggtgaccttgcttcccatgggaagatgtgactggcttgtttgaataactctggg--ccggcag--------------------ggatgagcaggctggggtcgggtctccgcgataagga-ggttgtttggctttgggatcttatccgtgagagcagaactcaggggagaccttgtggttaggctatttgaggccttcttgatttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        90863 299 -    281578 cgcatgctcacagccct-ggggtgg--gggacactgcatgccacatg-------ggggctgcacttgggaacagagtgaaccacgaggggctgtgggaggcacatt----ttgtagtaagaacagagtgaggtgaccttgcttcccatgggaagacgtgactggcttgtttgaataactctggg--ccggcag--------------------ggatgagcaggctggggtcgggtttccgcgataagga-ggttgtttggctttgggatcttatccgtgagagcagagctcaggggagaccttgtggttaggctatttgaggccttcttgatttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70949203 295 + 121039945 cgcatgctcacagccctgggggtcg--gggacaccgcatgtcacacg-------ggggctgcacttgggaacagagtgaaccacgaggggctgtgggaggcacatt----ttgtagtaagaagagggtgaggtgaccttgctt-ccatgggaagatgtgattggcttgtttgaataactctggg--ctggcag--------------------ggatgagcaggctggggtcgggtctccgtgataagga-ggttgtttggctttgggatcttatccgtgggagcagagctcgggggagac----tggttaggctatttgaggccttcttgatttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164253273 300 - 169600520 tgcatgctcacagccctggaggtgg--gggacaccgcatgccacacg-------ggggctgcacttgggaacagagtgaaccaccaggggctgtgggaggcacatt----ttgtagtaagaagagggtgagatgactttgctt-ccatgggaagatgtgattggcttgtttgaataactctggg--ccggcag--------------------ggatgagcaggctggggttgggtctccatgataaggagggttgtttggctttgggaccttatccgtgggagcagagctggagggagaccttgtggttaggctatttgaggccttcttgatttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165574091 300 - 171882078 tgcatgctcacagccctggaggtgg--gggacaccgcatgccacacg-------ggggctgcacttgggaacagagtgaaccaccagaggctgtgggaggcacatt----ttgtagtaagaagagggtgagatgactttgctt-ccatgggaagatgtgattggcttgtttgaataactctggg--ccggcag--------------------ggatgagcaggctggggtcgggtctccatgataaggagggttgtttggctttgggaccttatccgtgggagcagagctggagggagaccttgtggttaggctatttgaggccttcttgatttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       422896 300 +   2379783 cgcgtgctcacagccctggaggtgg--gggacaccgcatgccacacg-------ggggctgcacttgggaacagagtgagccaccaggggctgtgggaggcacatt----ttgtagtaagaagagggtgagatgactttgctt-ccgtgggaagatgtgattggcttgtttgaataactctggg--ccggcag--------------------ggatgagcaggctggggtcgggtctccatgataaggagggttgtttggctttgggaccttatccgtgggagcagagctcgggggagaccttgtggttaggctatttgaggccttcttgatttt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       389692 300 +   4116138 tgcatgctcacagccctggaggtgg--gggacacggcatgccacacg-------ggggctgcacttgggaacagagtgagccaccaggggctgtgggaggcacatt----ttgtagtaagaagagggtgagatgactttgctt-ccatgggaagatgtgattggcttgtttgaataactctggg--ccggcag--------------------ggatgagcaggctggggtcggctgtctgtgataaggagggttgtttggctttgggaccttatccgtgggagcagagctggggggagaccttgtggttaggctatttgaggccttcttgatttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53823559 300 +  58131712 tgcatgctcgcagccctggaggtgg--gggacaccgcatgccacacg-------ggggctgcactggggaacagagtgaaccaccaggggctgtgggaggcacatt----ttgtagtaagaagagggtgagatgactttgctt-ccatgggaagatgtgattggcttgtttgaataactctggg--ccagcag--------------------ggatgagcaggctggggtcgggtctccatgataaggagggttgtttggctttgggaccttatccgtgggagcagagctcgggggagaccttgtggttaggctatttgaggccttcttgatttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       436241 300 -   3636681 tgcatgctcacagccctggaggtgg--gggacaccgcatgccacacg-------ggggctgcacttgggaacagagtgaaccaccaggggctgtgggaggcacatt----ttgtagtaagaagagggtgagatgactttgctt-ccatgggaagatgtgattggcttgtttgaataactctggg--ccggcag--------------------ggatgagcaggctggggtcgggtctccatgataaggagggttgtttggctttgggaccttatccgtgggagcagagctggggggagaccttgtggttaggctatttgaggccttcttgatttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       418288 300 -   4457520 cgcatgctcacagccctggaggtgg--gggacaccgcatgccacatg-------ggggctgcacttgggaacagagtgagccaccaggggctgtgggaggcacatt----ttgtagtaagaagagggtgagatgactttgctt-ccatgggaagatgtgattggcttgtttgaataactctggg--ccggcgg--------------------ggatgagcaggctggggtcgggtctccatgataaggagggttgtttggctttgggaccttatccgtgggagcagagctcgggggagaccttgtggttaggctatttgaggccttcttgatttt
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             290629 290 -   2682657 cagatgctcacaaccc--gggtggg--gggacaccacatgccacacg-------gaggctatacctgggaa---------ccaccaggggctgtgagaggtaactt----ttttactaactggagggtgacatgaccttggttcctgtgggaagatgtgattggcttgtttggattactctggg--ctggcat--------------------ggatgggcaggatgctgtctggtctctgtgatgaggaggattgtttggctttgggaccttatccgtggaaccagagcttggaggagactttgcagttaggctcttggaagctttcttgatttt
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       317333 290 -   2086007 cagatgctcacaaccc--gggtggg--gggacaccacatgccacacg-------gaggctatgcctggtaa---------ccaccaggggctgtgagaggtaactt----ttttactaactggagagtgaggtgaccttggttcctgtgggaagttgtgattggcttgtttgaattactctggg--ctggcat--------------------ggatgagcaggatgctatccagtctccgtgatgaggaggattgtttgactttgggaccttatctgtgggagcagagctcagaggagaccttgcagttaggctgttcaaagccttcttgatttt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       380758 267 +   3831555 cagatgctcacaaccc--gggtggg--gggacaccacatgccacacg---------------------------------------ggggctgtgagaggtaactt----ttttactaacaggagggtgagatgaccttggttcctgtggaaagatgtgattggcttgtttgaattactctggg--ccggcac--------------------ggacgagcaggatggtggccggtctccgtgatgaggaggattgtttggctttgagaccttatccatgggagcagagctcggaggagaccttgtggttaggctgtttgaagcctccttgattat
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             368498 328 +   3845361 tgtatactcacagctcaggggatgagtggggtacagacagccacagggccacatgtggctgtgcttgggagc--agtgtaccatagggagcca-gagaggcatacgtacatagtaggagcaggagggtgggaggaccctggctcctatgggaaggtatgattggctca-gtgtgtaactctgtggcctgacagggatccaaagccactgttcaggatgagcaggacggtgcctggtc-ctatgggcaggagggttgcttggctttgggacttta-ctgtgggagcacag-tggggagggagcctatggttaggc-atttgaTTTTTTTTTTTTTTT
i otoGar3.GL873689          C 0 I 272
e micMur3.chr9              116217555 5564 + 116334831 I
e proCoq1.NW_012148396v1     13442936 6756 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=2296729.000000
s hg38.chr15_KI270851v1_alt    166084 280 +    263054 --------------------------accaatgtcaaggcagcacgtaatatttagtcttaatttcaggccacacGAGAAATTCTTCtgta----------tctactttccgtggcacttttcaaaaggttttgtccttagtgtttagcag-ttgattatgatgtgcctcgt----catggcttcctttggatttatcttgtgtgggc--------tttgtgcagattcttcagtctgcctgggtttatgtcatttgctgaacctaggaagttttcagccattagttctttggatatttttttcagcatt-caccttttctctc--ttGTTA
s panTro5.chr15              73738724 280 -  83230942 --------------------------accaatgtcaaggcagcacgtaatatttagtcttaatttcaggccacacGAGACATTCTTCtgta----------tctactttccgtggcacttttcaaaaggtttcgtccttagtgtttagcag-ttgattatgatgtgcctcgt----catggcttcctttggatttatcttgtgtgggc--------tttgtgcagattcttcaatctgcctgggtttctgtcattcgctgaacctaggaagttttcagccattagttctttggatatttttttcagcatt-caccttttctctc--ctGTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74042273 280 -  99763055 --------------------------accaatgtcaaggcagcacgtaatatttagtcttaatttcaggccacacGAGACATTCTTCtgta----------tctactttccgtggcacttttcaaaaggttttgtccttagtgtttagcag-ttgattatgatgtgcctcgt----catggcttcctttggatttatcttgtgtgggc--------tttgtgcagattcttcaatctgcctgggtttatgtcattcgctgaacctaggaatttttcagccattagttctttggatatttttttcagcatt-caccttttctctc--ctGTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        91162 280 -    281578 --------------------------accaatgtcaaggcagcacgtaatatttagtcttaatttcaggccacacGAGACATTCTTCTATA----------TCCACtttccatggcacttttcaaaaggttttatccttagtgtttagcag-ttgattatgatgtgcctcgt----catggcttcctttggatttatcttgtgtgggc--------tttgtgcagattcttcaatctgcctgggtttatgtcatttgctgaacttaggaagttttcagccattagttctttggatatttttttcagcatt-caccttttctctc--ctctTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70949498 268 + 121039945 --------------------------accaacgtcaaggcagcacgtaatattt------------aggccACACAAGACATTCTTCTATA----------TCTACtttctgtggcacttttcaaaaggttttgtccttagtgtttagcag-ttgattatgatgtgcctcgt----catggcttcctttggatttatcttgtttgggc--------tttgcacagattcttccatctgcctaggtttatgtcatttgctgaacccaggaagttttcagccattagttctttggatatttttttcagcatt-caccttttctctc--ctGTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164253573 271 - 169600520 --------------------------actgacgtcaaggcagcacgtaatatttagccttaatttcgggccccacaacacaCTCTTCTATA----------CCTGCtttctgtggcacttttcagaaggttttgtccttagtgtttagcag-ttgattatgatgtgcctagt----catggcttcttttggatttatcttgtttgggc------------------ttcttcagtctgcctaggtttatgccatttgctgaacttaggaagttttcagcccttagttctttggatatttttttcagcattataccttttctttc--ctGTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165574391 271 - 171882078 --------------------------actgacgtcaaggcagcacataatatttagccttaatttcgggccccacaacacaCTCTTCTATA----------CCTGCtttctgtggcacttttcagaaggttttgtccttagtgtttggcag-ttgattatgatgtgcctagt----catggcttcttttggatttatcttgtttgggc------------------ttcttcagtctgcctaggtttatgccatttgctgaacttaggaagttttcagcccttagttctttggatatttttttcagcattataccttttctttc--ctGTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       423196 289 +   2379783 --------------------------actgacgtcaaggcagcacgtaatatttagccttaatttcgggccctacaacacaCTCTTCTATA----------CCTGCtttctgtggcacttttcagaaggttttgtccttagtgtttagcag-ttgattatgatgtgcctagt----catggcttcttttggatttatcttgtttgggcttcttcagtctgcctagattcttcagtctgcctaggtttatgccatttgctgaacttaggaagttttcagccattagttctttggatatttttttcagcattataccttttctttc--ctGTTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       389992 289 +   4116138 --------------------------accgacgtcaaggcagcacgtaatatttagccttaatttcgggccccacaacacaCTCTTCTATA----------CCTGCtttctgtggcacttttcagaaggttttgtccttagtgtttagcag-ttgattatgatgtgcctagt----catggcttcttttggatttatcttgtttgggcttcttcagtctgcctagattcttcagtctgcctaggtttatgccatttgctgaacttaggaagttttcagccattagttctttggatatttttttcagcattataccttttctttc--ctGTTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53823859 289 +  58131712 --------------------------actgacgtcaaggcagcacgtaatatttagccttaatttcgggccccacgacacaCTCTTCTATA----------CCTGCtttctgtggcacttttcagaaggttttgtcctttgtgtttagcag-ttgattatgatgtgcctagt----catggcttcttttggatttatcttgtttgggcttcttcagtctgcctagattcttcagtctgcctaggtttatgtcatttgctgaacttaggaagttttcagccattagttctttggatatttttttcagcattataccttttctttc--ctGTTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       436541 289 -   3636681 --------------------------actgacgtcaaggcagcacgtaatatttagccttgatttcgggccccacaacacaCTCTTCTACA----------CCTGCtttctgtggcacttttcagaaggttttgtccttagtgtttagcag-ttgattatgatgtgcctagt----catggcttcttttggatttatcttgtttgggcttcttcagtctgcctagattcttcagtctgcctaggtttatgccatttgctgaacttaggaagttttcagccattagttctttggatatttttttcagcattataccttttctttc--ctGTTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       418588 289 -   4457520 --------------------------actgacgtcaaggcagcacgtaatatttagccttaatgtcgggccccacaacacaCTCTTCTATA----------CCTGCtttctgtggcacttttcggaaacttttgtccttagtgtttagcag-ttgattatgatgtgcctagt----catgacttcttttggatttatcttgtttgggcttcttcagtctgcctagattcttcagtctgcctaggtttatgtcatttgctgaacttgggaagttttcagccattagttctttggatatttttttcagcattgtaccttttctttc--ctGTTA
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             290919 273 -   2682657 --------------------------actgatgtc-aggcagtacaaa-----cagccttaatttcaggccacacaccacaTTCTTCtgta----------tccactttatgtggcacctttcaaaaggttttgtcctcgttggttagcag-ttaattacgatgtgcctagt----catgtctgcctttggatttgtctcgtgtgagc--------tttgtgcgggttcttcgaacttcgaaggttaatgtcatt-gctcaacttaggaagttttcagccattagttctttggat-tttttttcagcattgtacctcttctctc--ctgctA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       317623 273 -   2086007 --------------------------actgatgtc-aggcagtacaaa-----cagccttaatttcaggccacacaccacaTTCTTCTATA----------TCCACtttctgtggcacctttcaaaaggttttgtcctggctgattagcat-ttgactacgatgtgcctagt----catggcttcctttggatttatcttgtttgggc--------tttgcgcagattcttcgaactgccaaggttaatgtcatt-gctcaacttaggaagttttcagccattagttctttggat-tttttttcagcattgtactctttctcTC--TTGCTA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       381025 272 +   3831555 --------------------------actgatgtc-aggcagcacaaa-----cagccttaatttcaggccgcacaccacaTTCTTCTGTA----------TCCACtttctgtggcacctttcaaaaggttttgtccttgctgattagcag-ttgattacgatgtgcctagt----catggcttcctttggatttatcttgtttgggc--------tttgcgcagattctttgaactgccagggttaatgtcatt-gctcaacttaggaagttttcaaccattagttctttggg--ttttttccagcattgtaacttttctgtc--ctgctA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             369098 312 +   3845361 acaggtgccgagccAGGCATTTGAGGccagatgtgaaggccacacacaggactaagccttaatttcaggccacacaccacaTTGTcctgtagataacacatctttctttctcaggcacttttc--aaggttttttctttggt-tttagcagtttgattatgatgtgtctggctgggcacagctgtctttggacttatcttgtctgagg--------tttgctcatagtcttca---------ggtttatgtcttttgataaacttaggagatttgtagccagtccttcttgcagcatttctgtcagcggcataccttttccctcttctgttg
i otoGar3.GL873689          I 272 C 0
e micMur3.chr9              116217555 5564 + 116334831 I
e proCoq1.NW_012148396v1     13442936 6756 +  16154928 I
e canFam3.chr3               59936329 24766 -  91889043 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=36306.000000
s hg38.chr15_KI270851v1_alt    166364 3 +    263054 tta
s panTro5.chr15              73739004 3 -  83230942 tta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74042553 3 -  99763055 tta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        91442 3 -    281578 tta
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70949766 3 + 121039945 tta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164253844 3 - 169600520 tta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165574662 3 - 171882078 tta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       423485 3 +   2379783 tta
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       390281 3 +   4116138 tta
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53824148 3 +  58131712 tta
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       436830 3 -   3636681 tta
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       418877 3 -   4457520 tta
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291192 3 -   2682657 Cta
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       317896 3 -   2086007 Cta
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       381297 3 +   3831555 Cta
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116223119 3 + 116334831 tta
i micMur3.chr9              I 5564 C 0
s proCoq1.NW_012148396v1     13449692 3 +  16154928 tta
i proCoq1.NW_012148396v1    I 6756 C 0
s otoGar3.GL873689             369410 3 +   3845361 tta
i otoGar3.GL873689          C 0 I 7854
e canFam3.chr3               59936329 24766 -  91889043 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=1168490.000000
s hg38.chr15_KI270851v1_alt    166367 119 +    263054 acctgtggggtctgtgctaattctaggtagttagtttcagaa-ttgaattgcactgtgggacacaaagctgggtgtcgcagagaactggagaattgcttggtgcaaaagtccatacattt
s panTro5.chr15              73739007 119 -  83230942 acctgtggggtctgtgctaattctaggtagttagtttcagaa-ttgaattgcactgtgggacacacagctgggtgtcgcagagaactggagaattacttggtgcaaaagtccatgcattt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74042556 119 -  99763055 acctgtggggtctgtgctaattctaggtagttagtttcagaa-ttgaattgcactgtgggacacacagctgggtgtcgcagagaactggagaattacttggtgcaaaagtccgtgcattt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        91445 119 -    281578 acctgtggggtctgtgctaattctaggtagttagtttcagaa-tcgaattgcactgtgggacacaaagctgggtgtcgcagagaactggagaattgcttggtgcaaaagtccacgcattt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70949769 119 + 121039945 acctgtggggtctgtgctaattctaggtagttagtttcagaatttgaattgcactgtgggacacacagctgggtgtcgcagagaactggagaattgctt-gtgcaaaagtccatacattt
i nomLeu3.chr6              C 0 M 1223
s rheMac8.chr7              164253847 116 - 169600520 acctgtggggtc--tgctaattctaggtagttagtttcagaa-ttgaattgcactgtgggacacgtagatgggtgttgcagagaact-gagaattgccttgtgcaaaagtccatccattt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165574665 116 - 171882078 acctgtggggtc--tgctaattctaggtagttagtttcagaa-ttgaattgcactgtgggacacgtagatgggtgttgcagagaact-gagaattgccttgtgcaaaagtccatccattt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       423488 117 +   2379783 acctgtggggtc--tgctaattctaggtagttagtttcagaa-ttgaattgcactgtgggacacatagctgggtgtcccagagaactggagaattgcctggtgcaaaagtccatccattt
i macNem1.NW_012011934v1    C 0 I 13
s cerAty1.NW_012001462v1       390284 118 +   4116138 acctgtggggtctgtgctaattctaggtagttagtttcagaa-ttgaattgcactgtgggacacgtagatgggtgttgcagagaact-gagaattgccttgtgcaaaagtccatccattt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53824151 118 +  58131712 acctgtggggtctgtgctaattctaggtagttagtttcagaa-ctgaattgcactgtgggacacgtagatgggtgttgcagagaact-gagaattgccttgtgcaaaagtccatccattt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       436833 118 -   3636681 acctgtggggtctgtgctaattctaggtagttagtttcagaa-ttgaattgcactgtgggacacgtagatgggtgttgcagagaact-gagaattgccttgtgcaaaagtccatccattt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       418880 119 -   4457520 acctgtggggtctgtgctaattctaggtagttagtttcagaa-ttgaattgcactgtgggacacatagctgggtgtcccagagaactggagaattgccaggtgcaaaagtccatccattt
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291195 111 -   2682657 acctgtggggtccgtgccaattctagg----tagtttgagaa-ttgaattgcattgttgggcgca----taggtgttgcagggaactggagaattgcttgatgcaaaagtccatacattt
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       317899 111 -   2086007 acctgtgaggtctgtgccagttctagg----taatttcagaa-ttgaattgcattgttggacaca----taggtgttgcagagaactggagaattgcttgatgcaaaagtccatacattt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       381300 115 +   3831555 acctgtggggtctgtgccaattctagg----tagtttcagaa-ttgaattgcattgttggacacatagctaggtattgcagagaactggagaattgcttgatgcagaaatccatacattt
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116223122 118 + 116334831 acctgtgggatctgggctggttctaggtggatagtgtcagaa-ttgaattaaactgttggacacatag-ttgttgtcgcagagaactggagaattgcttggtgtgaaaatccatacattt
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13449695 118 +  16154928 acctgtggggtctgagctgattctaggtggttagtgtcagaa-ttgaattgaattgttggacacatag-ttgttgtctcagagaactggagaattgcttggtgtgaaaatccatacattt
i proCoq1.NW_012148396v1    C 0 C 0
e canFam3.chr3               59936329 24766 -  91889043 I
e otoGar3.GL873689             369413 7854 +   3845361 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=321250.000000
s hg38.chr15_KI270851v1_alt    166486 33 +    263054 ggtgtcagaagtgttataaacagaggaactgtt
s panTro5.chr15              73739126 33 -  83230942 ggtgtcagaaatgttgtaaacagaggaactgtt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74042675 33 -  99763055 ggtgtcagaaatgttgtaaacagaggaactgtt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        91564 33 -    281578 ggtgtcagaaatgttgtaaacagaggaactgtt
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164253963 33 - 169600520 ggtgtcagaagtgttgtaaACAGAGGATCTGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165574781 33 - 171882078 ggtgtcagaagtgttgtaaACAGAGGATCTGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       423618 33 +   2379783 GGTGTCAGAAGTGTTGTAAACAGAGGATCTGTT
i macNem1.NW_012011934v1    I 13 C 0
s cerAty1.NW_012001462v1       390402 33 +   4116138 ggtgtcagaagtgttgtaaACAGAGGATCTGTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53824269 33 +  58131712 ggtgtcagaagtgttgtaaACAGAGGATCTGTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       436951 33 -   3636681 ggtgtcagaagtgttgtaaACAGAGGATCTGTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       418999 33 -   4457520 ggtgtcagaagtgttgtaaACAGAGGATCTGTT
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291306 33 -   2682657 ggtgtcagaagtgttgtaaacagaggaactgtt
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       318010 33 -   2086007 ggtgtcagaagtgttgtaaACAGAGGAGCTATT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       381415 33 +   3831555 ggtgtcacaagtgttgtaaacagaggaactgtt
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116223240 33 + 116334831 ggtgtcagaaatgttgtaagtagagaGCTAGTT
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13449813 33 +  16154928 ggtgtcacaagtgttgtgagtagaggaatagtt
i proCoq1.NW_012148396v1    C 0 C 0
e canFam3.chr3               59936329 24766 -  91889043 I
e otoGar3.GL873689             369413 7854 +   3845361 I
e nomLeu3.chr6               70949888 1223 + 121039945 M
e calJac3.chr6              154454560 20133 - 158406734 I

a score=105164.000000
s hg38.chr15_KI270851v1_alt    166519 9 +    263054 tCCTTCGAG
s panTro5.chr15              73739159 9 -  83230942 tCCTTCGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74042708 9 -  99763055 tCCTTCGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        91597 9 -    281578 tcctttGAG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164253996 9 - 169600520 TCCTTAGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165574814 9 - 171882078 TCCTTAGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       423651 9 +   2379783 TCCTTAGAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       390435 9 +   4116138 TCCTTAGAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53824302 9 +  58131712 TCCTTAGAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       436984 9 -   3636681 TCCTTAGAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       419032 9 -   4457520 TCCTTAGAG
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291339 9 -   2682657 tCCTTAGAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       318043 9 -   2086007 TCCTTAGAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       381448 9 +   3831555 tCCTTAGAG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116223273 9 + 116334831 TCCTTAGAG
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13449846 9 +  16154928 tCCTTAGAG
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             377267 9 +   3845361 TCCTTAGAG
i otoGar3.GL873689          I 7854 C 0
e canFam3.chr3               59936329 24766 -  91889043 I
e nomLeu3.chr6               70949888 1223 + 121039945 M
e calJac3.chr6              154454560 20133 - 158406734 I

a score=729658.000000
s hg38.chr15_KI270851v1_alt    166528 83 +    263054 ATTTTTAGATAGTC---ATTATTTGTAATCTGGATGGGATATCATGTCTTTCCCCGATTGAGATACATTTTTCTAATTATGTTG-TT
s panTro5.chr15              73739168 83 -  83230942 ATTTTTAGATAGTC---ATTATTTGTAATCTGGATGGGATATCGTGTCTTTCACCGATTGAGATACATTTTTCTAATTATGTTG-TT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74042717 83 -  99763055 ATTTTTAGATAGTC---ATTATTTGTAATCTGGATGGGATATCGTGTCTTTCACCGATTGAGATACATTTTTCTAATTATGTTG-TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        91606 83 -    281578 ATTTTTAGATAGTC---ATTATTTGTAATCTGGATGGGATACTGTGTCTTTCACCGATTGAGATACATTTTTCTAATTATGTTG-TT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254005 81 - 169600520 ATTTTTAGGCACTT---GTTATTTGTAATTTGGATGGGATATCATGTCTTTCACCGATTTCGATACATTTTTC---TTATGTTGTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165574823 81 - 171882078 ATTTTTAGGCACTC---GTTATTTGTAATTTGGATGGGATATCATGTCTTTCACCGATTTTGATACATTTTTC---TTATGTTGTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       423660 84 +   2379783 ATTTTTAGGCACTC---GTTATTTGTAATTTGGATGGGATATCATGTCTTTCACCGATTTTGATACATTTTTCTAATTATGTTGTTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       390444 84 +   4116138 ATTTTTAGGCACTC---ATTATTTGTAATTTGGATGGGATATCATGTCTTTCACCGATTTCGATACATTTTTCTAATTATGTTGTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53824311 80 +  58131712 ATTTTTAGGCACTC---ATTATTTGTAATTTGGATGGGATATCATGTCTTTCACCGATTTCGATACATT----TAATTATGTTGTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       436993 84 -   3636681 ACTTTTAGGCACTC---ATTATTTGTAATTTGGATGGGATATCATGTCTTTCACCGATTTCGATACATTTTTCTAATTATGTTGTTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       419041 84 -   4457520 ATTTTTAGGCACTC---ATTATTTGTAATTTGGATGGGATATCATGTCTTTCACTGATTTCGATACATTTTTCTAATTATGTTGTTT
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291348 84 -   2682657 ATTTTTAGATACTC---ATTATTTGTAATCTGGGTGGGATATAATGTCTTTCACAGATTGAGATACATTTTTCTGATTGCGTAGTTT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       318052 84 -   2086007 ATTCTTAGATACTC---ATTATTTGTAATCTGGATGGGATATAATGTCTTTCACAGATTTAGCTACATTTTTCTGATTGCGTGGTTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       381457 84 +   3831555 TTTTTTAGATACTC---ATTATTTGTAATCTGGATGGGATATAATGTCTTTCACAGATTTAGATACGTTTTTCTGGTTGCGTGGTTT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116223282 86 + 116334831 ATTTTTAGATACTCCTTATTGTTTATAATCTTAATGGGATGTAATTTCTTTCACAGATTTAGATATATATTTCTAATTGTGTCATT-
i micMur3.chr9              C 0 I 18
s proCoq1.NW_012148396v1     13449855 86 +  16154928 ATTTTTAGATACTCCTTATTGTTTATAATCTGAATGGGATGTAATTTCTTTCACGGATTTAGATATATATTTCTAATTATGTCATT-
i proCoq1.NW_012148396v1    C 0 I 17
s otoGar3.GL873689             377276 71 +   3845361 ATATTTAGATACCACTTGCTATTTAT------AATGGAATATAATTTCTTTCACAGATATAGCTATATATTTCTCAT----------
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59961095 79 -  91889043 ATTTTTAGATACTTCTTACTGTTTGTAATTT------GATAGAATCTCTTCCACAGATT-AAATGTATATGTCTAATTATTTCATT-
i canFam3.chr3              I 24766 C 0
e nomLeu3.chr6               70949888 1223 + 121039945 M
e calJac3.chr6              154454560 20133 - 158406734 I

a score=118946.000000
s hg38.chr15_KI270851v1_alt    166611 22 +    263054 AGA----CATTTAGTCACAGCCTTCT
s panTro5.chr15              73739251 22 -  83230942 AGA----CATTTAGTCACAGCCTTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74042800 22 -  99763055 AGA----CATTTAGTCACAGCCTTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        91689 22 -    281578 AGA----TGTTTAGTCACAGCCTTCT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254086 22 - 169600520 GGA----TGTTTAGTAATAGCCTTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165574904 22 - 171882078 GGA----TGTTTAGTAATAGCCTTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       423744 22 +   2379783 GGA----TGTTTAGTAATAGCCTTGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       390528 22 +   4116138 GGA----TGTTTAGTAATAGCCTTGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53824391 22 +  58131712 GGA----TGTTTAGTAATAGCCTTGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       437077 22 -   3636681 GGA----TGTTTAGTAATAGCCTTGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       419125 22 -   4457520 GGA----TGTTTAGTAATAGCCTTGT
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291432 26 -   2682657 ACAAAGTTATTTAGTAACAGCCTTCT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       318136 26 -   2086007 AGACAGTTATTTAGTAACAGCCTTCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       381541 26 +   3831555 GGACAGTTATTTAGTAACAGCCTTCT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             377347 19 +   3845361 -----GTCATTTAG--ACAGCTGTTT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59961174 22 -  91889043 ----AAGAAAATAATGAGTGCCTTTG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116223368 18 + 116334831 I
e proCoq1.NW_012148396v1     13449941 17 +  16154928 I
e nomLeu3.chr6               70949888 1223 + 121039945 M
e calJac3.chr6              154454560 20133 - 158406734 I

a score=5650.000000
s hg38.chr15_KI270851v1_alt    166633 1 +    263054 G
s panTro5.chr15              73739273 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74042822 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        91711 1 -    281578 G
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254108 1 - 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165574926 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       423766 1 +   2379783 G
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       390550 1 +   4116138 G
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53824413 1 +  58131712 G
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       437099 1 -   3636681 G
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       419147 1 -   4457520 G
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291458 1 -   2682657 A
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       318162 1 -   2086007 G
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       381567 1 +   3831555 A
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13449958 1 +  16154928 A
i proCoq1.NW_012148396v1    I 17 C 0
s otoGar3.GL873689             377366 1 +   3845361 A
i otoGar3.GL873689          C 0 I 1
s canFam3.chr3               59961196 1 -  91889043 A
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116223368 18 + 116334831 I
e nomLeu3.chr6               70949888 1223 + 121039945 M
e calJac3.chr6              154454560 20133 - 158406734 I

a score=851630.000000
s hg38.chr15_KI270851v1_alt    166634 83 +    263054 TGATGGAATGTGTTTACACTTCAAGGTTAAGGTTAGTTCTCTCTTCTCTTCGCTTACTGTGTAAGGAGTTTTATGACAGTTGT
s panTro5.chr15              73739274 83 -  83230942 TGATGGAACGTGTTTACACTTCAAGGTTAAGGTTAGTTCTGTCTTCTCTTCGCTTACTATGTAAGGAGTTTTATGACAGTTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74042823 83 -  99763055 TGATGGAACGTGTTTACACTTCAGGGTTAAGGTTAGTTCTGTCTTCTCTTCGCTTACTATGTAAGGAGTTTTATGACAGTTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        91712 83 -    281578 TGATGGAGCGTGTTTACACTTCAAGGTTAAGGTTAGTTCTCTCTTCTCTTCGCTTACTATGTAAGGAGTTTTATGACAGTTGT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254109 83 - 169600520 TAATGGAACGTGTTTACACTTCAAGGTTAAGGTTAGTTCTCTCTGCTCTTCGCTTACTATGTAAGGAGTTTTATGACAGTTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165574927 83 - 171882078 TAATGGAACGTGTTTACACTTCAAGGTTAAGGTTAGTTCTCTCTGCTCTTCGCTTACTATGTAAGGAGTTTTATGACAGTTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       423767 83 +   2379783 TAATGGAACGTGTTTACACTTCAAGGTTAAGGTTAGTTCTCTCTGCTCTTCGCTTACTATGTAAGGAGTTTTATGACAGTTGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       390551 83 +   4116138 TAATGGAACGTGTTTACACTTCAAGGTTAAGGTTAGTTCTCTCTGCTCTTCGCTTACTATGTAAGGAGTTTTATGACAGTTGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53824414 83 +  58131712 TAATGGAATGTGTTTACACTTCAAGGTTAAGGTTAGTTCTCTCTGCTCTTCGCTTACTATGTAAGGAGTTTTATGATAGTTGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       437100 83 -   3636681 TAATGGAACGTGTTTACACTTCAAGGTTAAGGTTAGTTCTCTCTGCTCTTCGCTTACTATGTAAGGAGTTTTATGACAGTTGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       419148 79 -   4457520 TGATGGAACGTGTTTACACTTCAAGGTTAAGGTGAGTTCTCTCTTCTCTTCG----CTATGTAAGGAGTTTTATGACAGTTGT
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291459 83 -   2682657 TGGTAGGATGCATTTATACTTCAAAGTTAAGGTTAGTTCTCTCTTCTCTTTGCTTATTACGTAAGGAGTTTTATGACAGTTGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       318163 83 -   2086007 TGGTAGGATGCATTTACACTTCAAAATTAAGGTTAGTTCTCTCTTCTCTTTGCTTATTATGTAAGGAGTTTTATGACAGTTGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       381568 83 +   3831555 TGGTAGGATGCATTTACACTTCAAAGTTAAGGTTAGTTCTCTCTTCTGTTTGCTTATTATGTAAGGAGTTTTATGACAGTTGT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116223386 72 + 116334831 TGATAGGATGTGTTTACAC------TTTAAGGTTAGTTCTTTC--CTCTTCATTTGCTATGTAAGGAGTTTTATGGC---TGT
i micMur3.chr9              I 18 C 0
s proCoq1.NW_012148396v1     13449959 81 +  16154928 TGATAGGATGTGTTTATACTTCAAGTTTAAGGTTGGTTCTTTC--CTTTTCACTTGCTATGTAAGGAGTTTTATGGCTGTTGT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             377368 78 +   3845361 TAAT--GATATATTTATAC-TCAAGTTCATCATTGCTTCTTTC--CTCTTCACTTGCTATGTAAGGAGTTTTGTGGCCATTGT
i otoGar3.GL873689          I 1 C 0
s canFam3.chr3               59961197 74 -  91889043 GGATAGGACACATTTATACTTCAAGGTTTAGGTT---------CTGTCTTTATTTGCATTATAAGGAGTTTCATGACATTTGT
i canFam3.chr3              C 0 I 419
e nomLeu3.chr6               70949888 1223 + 121039945 M
e calJac3.chr6              154454560 20133 - 158406734 I

a score=959067.000000
s hg38.chr15_KI270851v1_alt    166717 84 +    263054 TTTTGACTGAAACTTGACATTGTCAGTGGCCTAAAGTGATTTTTCTCAGCTTTTCCTTTGTGTCCCAGTGCTCTTGAATTATGC
s panTro5.chr15              73739357 84 -  83230942 TTTTGACTGAAACTTTACATTGTCAGTGGCCTAAAGTGATTTTTCTCAGCTTTTCCTTTGTTTCCCAGTGCTCTTGAATTATGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74042906 84 -  99763055 TTTTGACTGAAACTTTACATTGTCAGTGGCCTAAAGTGATTTTTCTCAGCTTTTCCTTTGTTTCCCAGTGCTCTTGAATTATGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        91795 84 -    281578 TTTTGACTGAAACTTAACATTGTCAGTGGCCTAAAGTCATTTTTCTCAGCTTTTCCTTTGTGTCCCAGTGCTCTTGAGTTATGC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254192 84 - 169600520 TTTTGACTGAAACTTCACATCGTCAGTGGCCTAAAGTCATTGTTCTCAGCTTTTCCTTTGTGTCCCAGTGCTCTTGAATTCTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165575010 84 - 171882078 TTTTGACTGAAACTTCACATCGTCAGTGGCCTAAAGTCATTGTTCTCAGCTTTTCCTTTGTGTCCCAGTGCTCTTGAATTCTGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       423850 84 +   2379783 TTTTGACTGAAACTTCACATCGTCAGTGGCCTAAAGTCATTGTTCTCAGCTTTTCCTTTGTGTCCCAGTGCTCTTGAGTTCTGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       390634 84 +   4116138 TTTTGACTGAAACTTCACATTCTCAGTGGCCTAAAGTCATTGTTCTCAGCTTTTCCTTTGTGTCTCAGTGCTCTTGAATTCTGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53824497 84 +  58131712 TTTTGACTGAAACTTCACATTGTCAGTGGCCTAAAGTCATTGTTCTCAGCTTTTCCTTTGTGTCCCAGTGCTCTTGAATTCTGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       437183 84 -   3636681 TTTTGACTGAAACTTCACATTGTCAGTGGCCTAAAGTCATTGTTCTCAGCTTTTCCTTTGTGTCCCAGTGCTCTTGAATTCTGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       419227 84 -   4457520 TTTTGACTGAAACTTCACATTGTCAGTGGCCTAAAGTCTTTGTTCTCAGCTTTTCCTTTGTGTCCCAGTGCTCTTGAATTCTGC
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291542 84 -   2682657 TTTTGACTGAAACTTTACATTGTCGGTGGCCTAAAGTCGTTTTCCTCAGCTTTTCCTTTGTGTCCCAGTGCTCTTGAATTATGC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       318246 84 -   2086007 TTTTGACTGAAACTTTACATTGTTGGTGGCCTAAAGTCATTTTTCTCAGCTTTTCCTTTGTGTCCCAGTGCTCTTGAATTATGC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       381651 84 +   3831555 TTTTGACTGAAACTTTTCATTGTCGGTGGCCTGAAGTCATTTTTCTCAGTTTTTCCTTTGTGTCCCAGTGCTTTTGAATTATGC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116223458 82 + 116334831 TCTTGACTGAAACTTTAAATTGTTAATGGCCTAAAGTCATTGTTCTTAACTTTTTCTTTCTGT--CAGTGCTCCTGAATTATCC
i micMur3.chr9              C 0 I 6
s proCoq1.NW_012148396v1     13450040 82 +  16154928 TCTTGACTGAAACTTTAAATTGTTAATGGCCTAAAGTCATTGTTGTTAACTTTTCCTTTCTGT--CAATGCCCCTGAATTATAC
i proCoq1.NW_012148396v1    C 0 I 2
s otoGar3.GL873689             377446 84 +   3845361 TCTTGACTGAAACTTTAAATTGTCAGCGGCCTAAAGTCATTGTTCTCAACTTGTCCTTTGTGTTGCCATTCTCCTGCATCACGC
i otoGar3.GL873689          C 0 I 2
s canFam3.chr3               59961690 83 -  91889043 tcttgactgaAACTTTAAATTGTTGGTGGCCTAAAGTCACAGTTTCCAACTTTTT-TGTGTGTCCCAAAGCTCCTGAATTATAC
i canFam3.chr3              I 419 C 0
e nomLeu3.chr6               70949888 1223 + 121039945 M
e calJac3.chr6              154454560 20133 - 158406734 I

a score=-1039.000000
s hg38.chr15_KI270851v1_alt    166801 4 +    263054 --CAGC
s panTro5.chr15              73739441 4 -  83230942 --TATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74042990 4 -  99763055 --TGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        91879 4 -    281578 --TATC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254276 4 - 169600520 --TCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165575094 4 - 171882078 --TCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       423934 4 +   2379783 --TCTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       390718 4 +   4116138 --TCTC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53824581 4 +  58131712 --TCTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       437267 4 -   3636681 --TCTC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       419311 4 -   4457520 --TCTC
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291626 4 -   2682657 --CGTA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       318330 4 -   2086007 --CATA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       381735 4 +   3831555 --CATA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13450124 3 +  16154928 --TGT-
i proCoq1.NW_012148396v1    I 2 I 1
s otoGar3.GL873689             377532 3 +   3845361 --TGT-
i otoGar3.GL873689          I 2 I 1
s canFam3.chr3               59961773 6 -  91889043 TTTGTC
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116223540 6 + 116334831 I
e nomLeu3.chr6               70949888 1223 + 121039945 M
e calJac3.chr6              154454560 20133 - 158406734 I

a score=1987822.000000
s hg38.chr15_KI270851v1_alt    166805 185 +    263054 AGTGACAGTGCCCCTGCATAGCAGTGCTTCCCAGTTGGCAGTGGAGTAGGGCCTTGTAAAGAGTTAAAA---GATTTTTGAATCATACTCTTGTTCTACACCCTCCCTTTTCCCATGGATACAC-AAGC-ACTGGGACTCACTGGATAAAAGCAATT----GGTGTGAAATTGAAGTAGGTAAATATGAAAGAC
s panTro5.chr15              73739445 185 -  83230942 AGTCACAGTGCCCCTGCATAGCAGTGCTTCCCAGTTGGCAGTGGAGTAGGGCCTTGTAAAGAGTTAAAA---GATTTTTGAATCATACTCCTGTTCTGCACCCTCCCTTTTCCCATGGATACAC-AAGC-ATTGGGACTCACTGGATAAAAGCAATT----GGTGTGAAATTGAAGTAGGTAAATATCAAAGAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74042994 185 -  99763055 AGTCACAGTGCCCCTGCATAGCAGTGCTTCCCAGTTGGCAGTGGAGTAGGGCCTTGTAAAGAGTTAAAA---GATTTTTGAATCATACTCCTGTTCTGCACCCTCCCTTTTCCCATGGGTGCAC-AAGC-ATTGGGACTCACTGGATAAAAGCAATT----GGTGTGAAATTGAAGTAGGTAAATATCAAAGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        91883 185 -    281578 AGTCACAGTGCCCGTGCATAGCAGTGCTTCCCAGTTGGCAGTGGAGTAGGGCCTTGTAAAGAGTTAAAA---GATTTTTGAATCATACTCCTGTTCTACACCCTCCCTTTTCCCATGGATACAC-AAGC-ATTGGGACTCACTGGATAAAAGCAATT----GGTGTGAAATTGAAGTAGGTAAATATCAAAGAC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254280 185 - 169600520 AGTGACAGCGCCCCTGCATAGCAGTGCTTCTCAGTTGGCAGTGGAGTAGGGCCTTGTAAAGAGTTGAAA---GATTTTTGAATCATACTCCTGTTCTACACCCTCCCTTTTCCCATGTATACAC-AAGC-ATTGGGACTCACTGGAAAAAGGCAATT----GGTGTGAAATTGAAGTAGGTAAATATCAAAGAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165575098 185 - 171882078 AGTGACAGCGCCCCTGCATAGCAGTGCTTCTCAGTTGGCAGTGGAGTAGGGCCTTGTAAAGAGTTGAAA---GATTTTTGAATCATACTCCTGTTCTACACCCTCCCTTTTCCCATGTATACAC-AAGC-ATTGGGACTCACTGGAAAAAGGCAATT----GGTGTGAAATTGAAGTAGGTAAATATCAAAGAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       423938 185 +   2379783 AGTGATAGCGCCCCTGCATAGCAGTGCTTCTCAGTTGGCAGTGGAGTAGGGCCTTGTGAAGAGTTGAAA---GATTTTTGAATCATACTCCTGTTCTACACCCTCCCTTTTCCCATGTATACAC-AAGC-ATTGGGACTCACTGGAAAAAGGCAATT----GGTGTGAAATTGAAGTAGGTAAATATCAAAGAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       390722 185 +   4116138 AGTGACAGCGCCCCTGCATAGCAGTGCTTCTCAGTTGGCAGTGGAGTAGGGCCTTGTAAAGAGTTGAAA---GATTTTTGAATCATACTCCTGTTCTACACCCTCCCTTTTCCCATGTATACAC-AAGC-ATTGGGACTCACTGGAAAAAGGCAATT----GGTGTGAAATTGAAGTAGGTAAATATCAAAGAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53824585 185 +  58131712 AGTGACAGCGCCCCTGCATAGCAGTGCTTCTCAGTTGGCAGTGGAGTAGGGCCTTGTAAAGAGTTGAAA---GATTTTTGAATCATACTCCTGTTCTACACCCTCCCTTTTCCCATGTATACAC-AAGC-ATTGGGACTCACTGGAAAAAGGCAATT----GGTGTGAAATTGAAGTAGGTAAATATCAAAGAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       437271 185 -   3636681 AGTGACAGCGCCCCTGCATAGCAGTGCTTCTCAGTTGGCAGTGGAGTAGGGCCTTGTAAAGAGTTGAAA---GATTTTTGAATCATACTCCTGTTCTACACCCTCCCTTTTCCCATGTATACAC-AAGC-ATTGGGACTCACTGGAAAAAGGCAATT----GGTGTGAAATTGAAGTAGGTGAATATCAAAGAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       419315 185 -   4457520 AGTGACAGTGCCCCTGCATAGCAGTGCTTCTCAGCTGGCAGTGGAGTAGGGCCTTGTAAAGAGTTAAAA---GATTTTTGAATCATACTCCTGTTCTACACCCTCCCTTTTCCCATGTATACAC-AAGC-ATTGGGACTCACTGGAAAAAAGCAATT----GGTGTGAAATTGAAGTAGGTAAATATCAAAGAC
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291630 185 -   2682657 AGTGACAGTGCCCCTGCACAGCAGTGGTTCTCACTTGGCAGCGGAGTAGGGCATCGTAAAGAGTTAAAA---GATTTTTGAATCGAACTCCTGTTCTGCACCCTCCCTTTTCCCAGGGATACAC-AAGC-ATTGGGACTCCCTGGATAAAAGCCATT----GGTGTGAAATTGAAGTAGGTAACTATCAAAGAC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       318334 186 -   2086007 AGTGACAGTGCCCCTGCATAGCAGTGGTTCTCACTTGGCTATGGAGTAGGGCATTGTAAAGAGTTAAAA---GATTTTTGAATCGAACTCCTGTTCTGTACCCTCCCTTTTCCCATGGATACACAAAGC-ATTGGGACTCCTTGGATAAAAGCAATT----GGTGTGAAATTGAAGTAGGTAACTATCAAAGAC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       381739 185 +   3831555 AGTGGCAGTGCCCCTGCATAGCAGTGGTTCTCACTTGGCAGTGGAGTAGGGCATCATAAAGATTTAAAA---GATTTTTGAATTGAACTCCTGTTCTGCACCCTCCCATTTCCCATGGATACAC-AAGC-ATTGGGACTCCCTGGATAAAAGCAATT----GATGTGAGATTGAAGTAGGTAACTATCAAAGAC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116223546 188 + 116334831 AGTGGTAATAGCCCTGTGTAGCAGTAGTTCTCAGTTGGCAGTGGAGTAGGACATTGCATACAGTTAAACAATGATTTTTTAATCTTACCCCGATACCATGTCCTCCCCTTTCCCGTGGACACAC-AAGCAATTGAGCTTCACTGGATAAAAGCAATT----AGTGTGAAATTCAAGTGGGTAAATATCAAAGA-
i micMur3.chr9              I 6 C 0
s proCoq1.NW_012148396v1     13450128 188 +  16154928 AGTGGTAATGGCCCTGTGTAGCAAT-GTTCTCAGTTGGCAGTGGAGTAGGTCATTGCATACAGTTAAACAATGATTTTTGAATCTTACCCCCATTCCATGTCCTCCCCTTTCCTGTGGACATAC-AAGCAATTGAGCTTCACTGGATAAAAGCAATT----AGTGTGAAATTCAAGTGGGTAAATATCAAAGAC
i proCoq1.NW_012148396v1    I 1 I 262
s otoGar3.GL873689             377536 193 +   3845361 CCTGGTGGTGGTCCTGTGTAGCCATAGTTCTCAGTTGGCAGTGCAGGAAGCCATTGTGTACAGTTAAAAAATGGTTTTTGAATCCTACTCACATTCCATGTCCTTCCCTTTCCTGTAGACACAC-AAACAATTGATATTCACTGGATAAAAACAATTATCCAGTGTGAAGTTTAAGTGGGTAAATATCAAAGAC
i otoGar3.GL873689          I 1 C 0
s canFam3.chr3               59961779 179 -  91889043 AATGATTGTGGTCCTGTATAGCAGTGGTTCTCAGTTG---ATGGAATATGGCAATATATAGAGTTAAAA-ATGGTTTTTGAATCATGCTCCCATTTCACATCTT--CTATTCTTTTGGACACAG-CAGT---TGGGGATCACTGAATAAAAGTAGTT----CACATGAAATTCAATTAGGTAA-CATCAAGGAC
i canFam3.chr3              C 0 C 0
e nomLeu3.chr6               70949888 1223 + 121039945 M
e calJac3.chr6              154454560 20133 - 158406734 I

a score=592321.000000
s hg38.chr15_KI270851v1_alt    166990 58 +    263054 TTAAGTTTCTCAGTTAAGAAATGTACTAGGAAGTAGATGGAATGTCATTTTGGAAGAC
s panTro5.chr15              73739630 58 -  83230942 TTAAGTTTCTCAGTTGAGAAATGTACTAGGAAGTAGATGGAATATCACTTTGGAAGAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74043179 58 -  99763055 TTAAGTTTCTCAGTTGAGAAATGTACTAGGAAGTAGATGGAATATCACTTTGGAAGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        92068 58 -    281578 TTAAGTTTCTCAGTTGAGAAATGTACTAGGAAGTAGATGGAATATCACTTTGGAAGAC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254465 57 - 169600520 -TAAGTTTCTCAGTTGTGAAGTGTACTAGGAAGTTGATGGAATATCATTTTGGAAGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165575283 57 - 171882078 -TAAGTTTCTCAGTTGTGAAGTGTACTAGGAAGTTGATGGAATATCATTTTGGAAGAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       424123 57 +   2379783 -TAAGTTTCTCAGTTGTGAAGTGTACTAGGAAGTTGATGGAATATCATTTTGGAAGAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       390907 57 +   4116138 -TAAGTTTCTCAGTTGTGAAGTGTACTAGGAAGTTGATGGAATATCATTTTGGAAGAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53824770 57 +  58131712 -TAAGTTTCTCAGTTGTGAAGTGTACTAGGAAGTTGATGGAATATCATTTTGGAAGAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       437456 57 -   3636681 -TAAGTTTCTCAGTTGTGAAGTGTACTAGGAAGTTGATGGAATATCATTTTGGAAGAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       419500 57 -   4457520 -TAAGTTTCTCAGTTGTGAAATGTACTAGGAAGTTGATGGAATATCATTTTAGAAGAC
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291815 57 -   2682657 -TAAGTTTCTCAGTTGTGAAATCTAGTAGGAAGTTGATGGAATATCATTTTGGAAGCC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       318520 57 -   2086007 -TAAGTTTCTCAGTTGTGAAATCTAGTAGGAAGTTGATGGAATATCATTTTGGAAGCC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       381924 57 +   3831555 -TGAGTTTCTCGGTTGTGAAATCTGGTAGGAAGTTGATGGAATATCATTTTGGAAGCC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116223734 58 + 116334831 TAAAATTTCTCAGTTGTGAAATCTAATAGGAAATTAATGGAATATCATTTTGGAAGAC
i micMur3.chr9              C 0 I 125
s otoGar3.GL873689             377729 57 +   3845361 -CAAATTTCTCATTTGTAAAATCTAGTAGGAAATTGATGGAATATCATTTTGGAATAC
i otoGar3.GL873689          C 0 I 2
s canFam3.chr3               59961958 54 -  91889043 -TAAGTTTATTAGTTGTGAAATGTGGTAGGAAATTGATGGAATAT---TTTAGAAGAC
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13450316 262 +  16154928 I
e nomLeu3.chr6               70949888 1223 + 121039945 M
e calJac3.chr6              154454560 20133 - 158406734 I

a score=160022.000000
s hg38.chr15_KI270851v1_alt    167048 17 +    263054 ATCCTTTA---AATAATTTG
s panTro5.chr15              73739688 17 -  83230942 ATGCTTTA---AATAATTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74043237 17 -  99763055 ATGCTTTA---AATAATTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        92126 17 -    281578 ATGCTTTA---AATAATTTG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254522 17 - 169600520 ATGCTTTG---AATAATTTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165575340 17 - 171882078 ATGCTTTG---AATAATTTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       424180 17 +   2379783 ATGCTTTG---AATAATTTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       390964 17 +   4116138 ATGCTTTG---AATAATTTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53824827 17 +  58131712 ATGCTTTG---AATAATTTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       437513 17 -   3636681 ATGCTTTG---AATAATTTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       419557 17 -   4457520 ATGCTTTG---AATAATTTG
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291872 17 -   2682657 ATGCTTTA---AATAATTTG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       318577 17 -   2086007 ATGCTTTA---AATAATTTG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       381981 17 +   3831555 ATGCTTTA---AATAATTTG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             377788 17 +   3845361 ATGCTTTA---AAGAATTTG
i otoGar3.GL873689          I 2 I 4
s canFam3.chr3               59962012 20 -  91889043 CTGCTTCAAGGAAGAATTTG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116223792 125 + 116334831 I
e proCoq1.NW_012148396v1     13450316 262 +  16154928 I
e nomLeu3.chr6               70949888 1223 + 121039945 M
e calJac3.chr6              154454560 20133 - 158406734 I

a score=62056.000000
s hg38.chr15_KI270851v1_alt    167065 19 +    263054 ----TTGTATTGGtttc--------t-------------------------------------------ttttt
s panTro5.chr15              73739705 24 -  83230942 ----TTATATTGGtttc---tttttt-------------------------------------------ttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74043254 24 -  99763055 ----TTATATTGGtttc---tttttc-------------------------------------------ttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        92143 27 -    281578 ----TTATATTGGtttcttttttttt-------------------------------------------ttttt
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254539 22 - 169600520 ----TTATATCGGtttc---tttttc---------------------------------------------ttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165575357 22 - 171882078 ----TTATATCGGtttc---tttttc---------------------------------------------ttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       424197 20 +   2379783 ----TTATATCGGtttc---tttttc-----------------------------------------------t
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       390981 22 +   4116138 ----TTATATCGGtttc---tttttc---------------------------------------------ttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53824844 20 +  58131712 ----TTATATTGGtttc---tttttc-----------------------------------------------t
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       437530 21 -   3636681 ----TTATATCGGtttc---tttttc----------------------------------------------tt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       419574 20 -   4457520 ----TTATATTGGtttc---tttttc-----------------------------------------------t
i colAng1.NW_012115278v1    C 0 C 0
s aotNan1.NW_018503298v1       381998 67 +   3831555 ----ATATATTGGTTTC---TTTATTAAAATTATACTTGATCTGTTACAGGTATGATTGATGTAttttatttta
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             377809 19 +   3845361 ----ATATATTGGTTAC---TTTATT------------------------------------------------
i otoGar3.GL873689          I 4 I 23
s canFam3.chr3               59962032 23 -  91889043 AATGATATGTAAATTTC---TTTTTt------------------------------------------------
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116223792 125 + 116334831 I
e proCoq1.NW_012148396v1     13450316 262 +  16154928 I
e cebCap1.NW_016107707v1       318594  0 -   2086007 C
e nomLeu3.chr6               70949888 1223 + 121039945 M
e saiBol1.JH378292             291889  0 -   2682657 C
e calJac3.chr6              154454560 20133 - 158406734 I

a score=74267.000000
s hg38.chr15_KI270851v1_alt    167084 17 +    263054 tttttttttgag-atgga-
s panTro5.chr15              73739729 17 -  83230942 tttttttttgag-acaga-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74043278 17 -  99763055 ttttttttgtag-acaga-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        92170 17 -    281578 tttttttttgag-acaga-
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254561 17 - 169600520 tttttttttgct-acaga-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165575379 17 - 171882078 tttttttttgct-acaga-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       424217 17 +   2379783 tttttttttgct-acaga-
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       391003 17 +   4116138 tttttttttgct-acaga-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53824864 17 +  58131712 tttttttttgct-acgga-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       437551 17 -   3636681 tttttttttgct-acaga-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       419594 18 -   4457520 tttttttttgataacgga-
i colAng1.NW_012115278v1    C 0 C 0
s aotNan1.NW_018503298v1       382065 17 +   3831555 tttttttttgag-acgga-
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59962055 17 -  91889043 -ttttttttaag-gttgta
i canFam3.chr3              C 0 I 207
e micMur3.chr9              116223792 125 + 116334831 I
e proCoq1.NW_012148396v1     13450316 262 +  16154928 I
e otoGar3.GL873689             377828 23 +   3845361 I
e cebCap1.NW_016107707v1       318594  0 -   2086007 C
e nomLeu3.chr6               70949888 1223 + 121039945 M
e saiBol1.JH378292             291889  0 -   2682657 C
e calJac3.chr6              154454560 20133 - 158406734 I

a score=1434433.000000
s hg38.chr15_KI270851v1_alt    167101 274 +    263054 gtctcgctctgtcacccaggctggagtgcagtggcatgatctcagcacactgcaagctctgcctcccaggttcacaccattctcctgcctcagcctcccgagtagctgggaatacaggcgcctgccatcatgctcagctaa-ttttttgtatttttagtagagacgaggtttcaccgtgttagccaggatggtgtcgatatcctgacctcctgatccacccgccatggcttcccaaagtgctgggattacaggcatgagccaccacgcccggccA
s panTro5.chr15              73739746 275 -  83230942 gtctcgctctgtcacccaggctggagtgcagtggcatgatctcagctcactgcaagctctgcctcccgggttcacgccattctcctgccttagcctcctgagtagctgggactacaggcgcccgccaccacggctggttaatttttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatccacccgccatggcttcccaaagtgctgggattacaggcgtgagccaccacgcctggccG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74043295 274 -  99763055 gtctcgctctgtcacccaggctggagtgcagtggcgtgatctcagctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccacggctggctaa-ttttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatccacccgccatggcttcccaaagtgctgggattacaggcgtgagccaccacgcctggccG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        92187 273 -    281578 gtct-gctctgtcacccaggctggagtgcagtggcgtgatctcagctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccacggctggctaa-ttttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatccacccgccatggcttcccaaagtgctgggattacaggcgtgagccaccatgcctggccG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254578 273 - 169600520 gtcttgctctgttgcccagactggagtacagtggcgccatctcgggtcactgcaagctctgcctccagggttcacaccattgtcctgcctcagcctcccgggtagctgggattacaggtgcccgccatcatgcctggctaa-ttttttgtg-ttttagtagagacagggtttcactgttttagccaggatggtcttgatcttctgaccttgtgatctacccgtcttggcttcccagaatgctgggattacaggcatgagcccctgtgcccggGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165575396 273 - 171882078 gtcttgctctgttgcccagactggagtacagtggcgccatctcgggtcactgcaagctctgcctccagggttcacaccattgtcctgcctcagcctcccgggtagctgggattacaggtgcccgccatcatgcctggctaa-ttttttgtg-ttttagtagagacagggtttcactgtgttagccaggatggtcttgatcttctgaccttgtgatctacccgtcttggcttcccagaatgctgggattacaggcatgagcccctgtgcccggGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       424234 273 +   2379783 gtcttgctctgttgcccagactggagtacagtggcgccatctcgggtcactgcaagctctgcctccagggttcacaccattgtcctgcctcagcctcccgggtagctgggattacaggcgcccgccatcatgcctggctaa-ttttttgtg-ttttagtagagacagggtttcactgtgttagccaggatggtcttgatcttctgaccttgtgatctacccgtcttggcttcccagaatgctgggattacaggcatgagcccctgtgcccggGTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       391020 274 +   4116138 gtcttgctctgttgcccagactggagtacagtggcaccatctcgggtcactgcaagttctgcctccagggttcacaccattgtcctgcctcagcctcccgggtagctgggattacaggcgcccgccatcatgcctggctaa-ttttttgtatttttagtagagacagggtttcactgtgttagccaggatggtcttgatctcctgaccttgtgatctgcccgtcttggcttcccaaaatgctgggattacaggcgtgagcccctgtgcccggGTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53824881 274 +  58131712 gtcttgctctgttgcccagactggagtacagtggcaccatctcgggtcactgcaagctctgcctccagggttcacaccattgtcctgcctcagtctcctgggtagctgggattataggcgcccgccatcatgcctggctaa-ttttttgtatttttagtggagacagggtttcaccgtgttagccaggatggtcttgatctcctgaccttgtgatctacccgtcttggcttcccaaaatgctgggattacaggcatgagcccctgtgcccggGTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       437568 274 -   3636681 gtcttgctctgttgcccagactggagtacagtggcaccatctcgggtcactgcaagctctgcctccagggttcacaccattgtcctgcctcagcctcccgggtagctgggattacaggcgcccgccatcatgcctggctaa-ttttttgtatttttagtagagacagggtttcactgtgttagccaggatggtcttgatctcctgaccttgtgatctgcccgtcttggcttcccaaaatgctgggattacaggcatgagcccctgtgcccggGTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       419612 274 -   4457520 gtcttgctctgttgcccagactggagtacagtggcgccatctccggtcactgcaagccctgcctccagggttcacaccattgtcctgcctcagcctcccaggtagctgggattacaggcgcccgccatcatgcctggctaa-ttttttgtatttttagtagagacagggtttcaccatgttagccaggatggtcttgatctcctgaccttgtgatctacccgtcttggcttcccaaaatgctgggattacaggcatgagcccccgtgcctggGTG
i colAng1.NW_012115278v1    C 0 C 0
s aotNan1.NW_018503298v1       382082 270 +   3831555 gtttcgctc-gttacccacgctggagtgcaatggcgcgatctcggctcactgtaacctccgcctcctgggttcaggcaattctcctgcctcagcctcctgagtagctgggattacaggcacgcgccaccgtgcccagctaa-ttttttgta---ttagtagagacggggtttcaccatgttgaccaggatggtctcgatctcttgacctcgtgatccacctgcctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggccA
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116223792 125 + 116334831 I
e proCoq1.NW_012148396v1     13450316 262 +  16154928 I
e canFam3.chr3               59962072 207 -  91889043 I
e otoGar3.GL873689             377828  23 +   3845361 I
e cebCap1.NW_016107707v1       318594   0 -   2086007 C
e nomLeu3.chr6               70949888 1223 + 121039945 M
e saiBol1.JH378292             291889   0 -   2682657 C
e calJac3.chr6              154454560 20133 - 158406734 I

a score=63822.000000
s hg38.chr15_KI270851v1_alt    167375 9 +    263054 ATATATTGG
s panTro5.chr15              73740021 9 -  83230942 ATATATTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74043569 9 -  99763055 ATATATTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        92460 9 -    281578 ATATATTGG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254851 9 - 169600520 ATATATTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165575669 9 - 171882078 ATATATTGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       424507 9 +   2379783 ATATGTTGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       391294 9 +   4116138 ATATATTGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53825155 9 +  58131712 ATATATTGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       437842 9 -   3636681 ATATATTGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       419886 9 -   4457520 ATATATTGG
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291889 9 -   2682657 ATATATTGG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       318594 9 -   2086007 ATATATTGG
i cebCap1.NW_016107707v1    C 0 C 0
e micMur3.chr9              116223792 125 + 116334831 I
e proCoq1.NW_012148396v1     13450316 262 +  16154928 I
e canFam3.chr3               59962072 207 -  91889043 I
e aotNan1.NW_018503298v1       382352 0 +   3831555 C
e otoGar3.GL873689             377828 23 +   3845361 I
e nomLeu3.chr6               70949888 1223 + 121039945 M
e calJac3.chr6              154454560 20133 - 158406734 I

a score=80171.000000
s hg38.chr15_KI270851v1_alt    167384 11 +    263054 TTTCTTTATGA
s panTro5.chr15              73740030 11 -  83230942 TTTCTTTATGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74043578 11 -  99763055 TTTCTTTATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        92469 11 -    281578 TTTCTTTATGA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254860 11 - 169600520 TTTCTTTATGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165575678 11 - 171882078 TTTCTTTATGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       424516 11 +   2379783 TTTCTTTATGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       391303 11 +   4116138 TTTCTTTATGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53825164 11 +  58131712 TTTCTTTATGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       437851 11 -   3636681 TTTCTTTATGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       419895 11 -   4457520 TTTCTTTATGA
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291898 11 -   2682657 TTTCTTTATTG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       318603 11 -   2086007 TTTCTTTATTA
i cebCap1.NW_016107707v1    C 0 C 0
s canFam3.chr3               59962279 11 -  91889043 TTACTTCATAA
i canFam3.chr3              I 207 C 0
e micMur3.chr9              116223792 125 + 116334831 I
e proCoq1.NW_012148396v1     13450316 262 +  16154928 I
e aotNan1.NW_018503298v1       382352  0 +   3831555 C
e otoGar3.GL873689             377828 23 +   3845361 I
e nomLeu3.chr6               70949888 1223 + 121039945 M
e calJac3.chr6              154454560 20133 - 158406734 I

a score=205707.000000
s hg38.chr15_KI270851v1_alt    167395 33 +    263054 AAATTATACTGGATCTGTTACAGGTATGATTGA
s panTro5.chr15              73740041 33 -  83230942 AAATTATACTGGGTCTGTTAGAGGTATGATTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74043589 33 -  99763055 AAATTATACTGGGTCTGTTAGAGGTATGATTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        92480 33 -    281578 AAATTATACTGGGTCTGTTACAGGTATGATTGA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254871 33 - 169600520 AAAGTGTACTGGATCTGTTACAGGTGTGACTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165575689 33 - 171882078 AAAGTGTACTGGATCTGTTACAGGTGTGACTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       424527 33 +   2379783 AAAGTGTACTGGATCTGTTACAGGTGTGACTGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       391314 33 +   4116138 AAAGTGTACTGGATCTGTTACAGGTGTGACTGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53825175 33 +  58131712 AAATTGTACTGGATCTGTTACAGGTGTAACTGA
i chlSab2.chr26             C 0 I 346
s manLeu1.NW_012102332v1       437862 33 -   3636681 AAAGTGTACTGGATCTGTTACAGGTGTGACTGT
i manLeu1.NW_012102332v1    C 0 I 64
s colAng1.NW_012115278v1       419906 33 -   4457520 AAATTGTACTGGATCTGTTACAGGTGTGACTGA
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291909 33 -   2682657 AAATTGTACTGGATCTGTTACAGGTATGATTGA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       318614 33 -   2086007 AAATTGTATTGGATCTGTTACAGGTATGATTGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       382352  1 +   3831555 --------------------------------A
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             377851 31 +   3845361 AAATCACACTGGATCTTGTATAGTTATA--TAA
i otoGar3.GL873689          I 23 C 0
s canFam3.chr3               59962290 31 -  91889043 --AACACAGTGTACTTTTTGTGGTAGTGATTCA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116223792 125 + 116334831 I
e proCoq1.NW_012148396v1     13450316 262 +  16154928 I
e nomLeu3.chr6               70949888 1223 + 121039945 M
e calJac3.chr6              154454560 20133 - 158406734 I

a score=186482.000000
s hg38.chr15_KI270851v1_alt    167428 26 +    263054 TGTATTTTA-TTTTTA-AGTTGTCAAGC
s panTro5.chr15              73740074 26 -  83230942 TGTATTTTA-TTTTTA-AGTTGTCCAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74043622 26 -  99763055 TGTATTTTA-TTTTTA-AGTTGTCCAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        92513 26 -    281578 TGTATTTTA-TTTTTA-AGTTGTCCAAC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254904 26 - 169600520 TGTATTTTA-TTTTTA-AGTGGGCAAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165575722 26 - 171882078 TGTATTTTA-TTTTTA-AGTGGGCAAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       424560 26 +   2379783 TGTATTTTA-TTTTTA-AGTGGGCAAAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       391347 26 +   4116138 TGTATTTTA-TTTTTA-AGTGGGCAAAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53825554 26 +  58131712 TGTATTTTA-TTTTTA-AGTGGGCAAAC
i chlSab2.chr26             I 346 C 0
s manLeu1.NW_012102332v1       437959 26 -   3636681 TGTATTTTA-TTTTTA-AGTTGTCAAAC
i manLeu1.NW_012102332v1    I 64 C 0
s colAng1.NW_012115278v1       419939 26 -   4457520 TGTATTTTA-TTTTTA-AGTGGGCAAAC
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291942 27 -   2682657 TGTATTTTATTTTTTA-CGTTTTCAAAC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       318647 27 -   2086007 TATATTTTATTTTTTA-AGTTGTCAAAC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       382353 27 +   3831555 TGTATTTTATTTTTTA-AGTTGTCAAAC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             377882 22 +   3845361 --TATGT---TTTTTA-AATCATCAAAC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59962321 25 -  91889043 --TATTATT-TTCTTGTAATCATCAAAC
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116223792 125 + 116334831 I
e proCoq1.NW_012148396v1     13450316 262 +  16154928 I
e nomLeu3.chr6               70949888 1223 + 121039945 M
e calJac3.chr6              154454560 20133 - 158406734 I

a score=281499.000000
s hg38.chr15_KI270851v1_alt    167454 31 +    263054 ATTCAGTTAATCATGTGTG-T---TGTAACT-----TTTC------
s panTro5.chr15              73740100 31 -  83230942 ATTCAGTTAATGATGTGTG-T---TGTAACT-----TTTC------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74043648 31 -  99763055 ATTCAGTTAATGATGTGTG-T---TGTAACT-----TTTC------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        92539 31 -    281578 ATTCAGTTAATGATGTGTG-T---TGTAACT-----TTTT------
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254930 31 - 169600520 ATTCAATTAATGATGTGTG-T---TGTAACT-----TTTC------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165575748 31 - 171882078 ATTCAATTAATGATGTGTG-T---TGTAACT-----TTTC------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       424586 31 +   2379783 ATTCAATTAATGATGTGTG-T---TGTAACT-----TTTC------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       391373 31 +   4116138 ATTCAATTAATGATGTGTG-T---TGTAACT-----TTTC------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53825580 31 +  58131712 ATTCAATTAATGATGTGTG-T---TGTAACT-----TTTC------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       437985 31 -   3636681 ATTCAGTTAATGATGTGTG-T---TGTAACT-----TTTC------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       419965 31 -   4457520 ATTCAGTTAATGATGTGTG-T---TGTAACT-----TTTC------
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             291969 39 -   2682657 ATTCAGTTAATGATGTGTG-TGTATGTAACTTTTCATTTT------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       318674 40 -   2086007 ATTCAGTTAATGATATGTGTTGTATGTAACTTTTCATTTC------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       382380 36 +   3831555 ATTCAGTTAATGATGTGTG-T---TGTAACTTTGCATTTC------
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116223917 31 + 116334831 ATTCAGTTAATGATGTGTG-T---TGTAATT-----TTTC------
i micMur3.chr9              I 125 I 114
s otoGar3.GL873689             377904 31 +   3845361 CATTGGTTAATGATGTGTG-T---TGTACCA-----TTTC------
i otoGar3.GL873689          C 0 I 5
s canFam3.chr3               59962346 35 -  91889043 ATTCAACTAATGATGTAAC-T-----TAACC-----TTTCCATTTC
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13450316 262 +  16154928 I
e nomLeu3.chr6               70949888 1223 + 121039945 M
e calJac3.chr6              154454560 20133 - 158406734 I

a score=142634.000000
s hg38.chr15_KI270851v1_alt    167485 13 +    263054 GGGGAGGGACATT
s panTro5.chr15              73740131 13 -  83230942 GGGGAGGGACATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74043679 13 -  99763055 GGGGAGGGACATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        92570 13 -    281578 GGGGAGGGACATT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254961 13 - 169600520 GGGGAGGGACATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165575779 13 - 171882078 GGGGAGGGACATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       424617 13 +   2379783 GGGGAGGGACATT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       391404 13 +   4116138 GGGGAGGGACATT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53825611 13 +  58131712 GGGGAGGGACATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       438016 13 -   3636681 GGGGAGGGACATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       419996 13 -   4457520 GGGGAGGGACATT
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             292008 13 -   2682657 GGGGAGGGACATT
i saiBol1.JH378292          C 0 I 16612
s cebCap1.NW_016107707v1       318714 13 -   2086007 GGGGAGGGACATT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       382416 13 +   3831555 GGGGAGAGACATT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             377940 13 +   3845361 TGGGAGGGACATT
i otoGar3.GL873689          I 5 C 0
s canFam3.chr3               59962381 13 -  91889043 TGGGAGGGACATT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116223948 114 + 116334831 I
e proCoq1.NW_012148396v1     13450316 262 +  16154928 I
e nomLeu3.chr6               70949888 1223 + 121039945 M
e calJac3.chr6              154454560 20133 - 158406734 I

a score=268532.000000
s hg38.chr15_KI270851v1_alt    167498 37 +    263054 TGC--AGAGGCT----AACGG-TATGACATTCTGAAAAGCGGTG
s panTro5.chr15              73740144 37 -  83230942 TGC--AGAGACT----AATGG-TATGGCATTCTGAAAAGCGGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74043692 37 -  99763055 TGC--AGAGACT----AATGG-TATGGCATTCTGAAAAGCGGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        92583 37 -    281578 TGC--AGAGACT----AACGG-TATGACATTCTGAAAAGTGGTT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164254974 37 - 169600520 TGC--AGAGACT----AATGG-TATGGCATTCTGAAAAGCAGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165575792 37 - 171882078 TGC--AGAGACT----AATGG-TATGGCATTCTGAAAAGCAGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       424630 37 +   2379783 TGC--AGAGACT----AATGG-TATGGCATTCTGAAAAGCAGTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       391417 37 +   4116138 TGC--AGAGACT----AATGG-TATGGCATTCTGAAAAGCAGTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53825624 37 +  58131712 TGC--AGAGACT----AATGG-TATGGCATTCTGAAAAGCAGTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       438029 37 -   3636681 TGC--AGAGACT----AATGG-TATGGCATTCTGAAAAGCAGTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       420009 37 -   4457520 TGC--AGAGACT----AATGG-TATGGCATTCTGAAAAGCAGTT
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       318727 41 -   2086007 TGC--AAAGACTCACAAATGG-TATGGCATTTTGAAAAGCAGTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       382429 41 +   3831555 TGC--AAAGACTGACAAATGG-TATGGCATTTTGAAAAGCAGTT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             377953 44 +   3845361 TGCAAAGAGACTGACAAGTGGCTATTGCATTTTGGAAAGCAATA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59962394 44 -  91889043 TGCAAAGAGACTGACAAGTGGATGCTACAATTTGAAAAGGaatt
i canFam3.chr3              C 0 I 22
e micMur3.chr9              116223948 114 + 116334831 I
e proCoq1.NW_012148396v1     13450316 262 +  16154928 I
e nomLeu3.chr6               70949888 1223 + 121039945 M
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=508628.000000
s hg38.chr15_KI270851v1_alt    167535 58 +    263054 ACAGA---TTAAAAAATTTTTAATTCTGCAGATGATAGTGTCGA---ACCAAGTGGGACAAAGA
s panTro5.chr15              73740181 58 -  83230942 ACAGA---TTAAAAAATTTTTAATTCTGCAGATGATAGTGTCGA---ACCAAGTGGAACAAAGA
i panTro5.chr15             C 0 I 3
s panPan2.chr15              74043729 58 -  99763055 ACAGA---TTAAAAAATTTTTAATTCTGCAGATGATAGTGTCGA---ACCAAGTGGAACAAAGA
i panPan2.chr15             C 0 I 3
s gorGor5.CYUI01000141v1        92620 58 -    281578 ACAGA---TTAAAAAATTTTTAATTCTGCAGATGATAGTGTCGA---ACCAAGTGGAACAAAGA
i gorGor5.CYUI01000141v1    C 0 I 3
s rheMac8.chr7              164255011 58 - 169600520 ACAGA---TTAAAATATTTTTAATTCTGCAGATGATAGTGTCGA---ACCGAGTGgaacaaaga
i rheMac8.chr7              C 0 I 3
s macFas5.chr7              165575829 58 - 171882078 ACAGA---TTAAAATATTTTTAATTCTGCAGATGATAGTGTCGA---ACCGAGTGgaacaaaga
i macFas5.chr7              C 0 I 3
s macNem1.NW_012011934v1       424667 58 +   2379783 ACAGA---TTAAAATATTTTTAATTCTGCAGATGATAGTGTCGA---ACCGAGTGGAACAAAGA
i macNem1.NW_012011934v1    C 0 I 3
s cerAty1.NW_012001462v1       391454 58 +   4116138 ACAGA---TTAAAATATTTTTAATTCTGCAGATGATAGTGTCGA---ACCGAGTGGAACAAAGA
i cerAty1.NW_012001462v1    C 0 I 3
s chlSab2.chr26              53825661 58 +  58131712 ACAGA---TTAAAATATTTTTAATTCTGCAGATGATAGTGTCGA---ACCAAGTGGAACAAAGA
i chlSab2.chr26             C 0 I 3
s manLeu1.NW_012102332v1       438066 58 -   3636681 ACAGA---TTAAAATATTTTTAATTCTGCAGATGATAGTGTCGA---ACCGGGTGgaacaaaga
i manLeu1.NW_012102332v1    C 0 I 3
s colAng1.NW_012115278v1       420046 58 -   4457520 ACAGA---TTAAAATATTTTTAATTCTGCAGATGATAGTGTCGA---ACCAAGTGGAACAAAGA
i colAng1.NW_012115278v1    C 0 I 3
s cebCap1.NW_016107707v1       318768 58 -   2086007 ATAGA---TTTAAAATTTTTTAATTCTACAGATGATAGTGTTGA---ACAAAGTGGAACAAAGA
i cebCap1.NW_016107707v1    C 0 I 3
s aotNan1.NW_018503298v1       382470 58 +   3831555 ATAGA---TTTAAAAATTTTTAATTCTACAGATGATAGTGTTGA---ACAAAGTGGAGCAAAGA
i aotNan1.NW_018503298v1    C 0 I 3
s proCoq1.NW_012148396v1     13450578 61 +  16154928 ACAGA---TTTAAAAATTTTTAATTCTCCAGATGATGGTGTTGATGCTCAAAGTGGATCAAAGA
i proCoq1.NW_012148396v1    I 262 I 3
s otoGar3.GL873689             377997 60 +   3845361 ACAGA---TTTAACAA-TTTTAATTTTCCAGATGATGGTGTTGATACTCAAAGTGGAACAAAGA
i otoGar3.GL873689          C 0 I 3
s canFam3.chr3               59962460 64 -  91889043 atagatttttaaaaaaaaatttattttCCAGATGATGGTGTTGATACTCAAAGTGGAACAAAGA
i canFam3.chr3              I 22 C 0
e micMur3.chr9              116223948 114 + 116334831 I
e nomLeu3.chr6               70949888 1223 + 121039945 M
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=1527587.000000
s hg38.chr15_KI270851v1_alt    167593 136 +    263054 ---AAGATCTGAATGACAAAGAGAAAAAAGATGAAGAAGAAACTCCTGCACCTATATATAGGGCCAAGTCAATTCTGGACAGCTGGGTATGGGGCAAGCAACCAGGTGATCTTGCGAA------TTTTGGCACTTTGGAAAGGTT
s panTro5.chr15              73740242 136 -  83230942 ---AAGATCTGAATGACAAAGAGAAAAAAGATGAAGAAGAAACTCCTGCACCTATATATAGGGCCAAGTCAATTCTGGACAGCTGGGTATGGGGCAAGCAACCAGGTAATCTTGTGAA------TTTTAGCACTTTGGAAAGGTT
i panTro5.chr15             I 3 C 0
s panPan2.chr15              74043790 136 -  99763055 ---AAGATCTGAATGACAAAGAGAAAAAAGATGAAGAAGAAACTCCTGCACCTATATATAGGGCCAAGTCAATTCTGGACAGCTGGGTATGGGGCAAGCAACCAGGTAATCTTGTGAA------TTTTGGCACTTTGGAAAGGTT
i panPan2.chr15             I 3 C 0
s gorGor5.CYUI01000141v1        92681 136 -    281578 ---AAGATCTGAATGACAAAGAGAAAAAAGATGAAGAAGAAACTCCTGCACCTATATATAGGGCCAAGTCAATTCTGGACAGCTGGGTATGGGGCAAGCAACCAGGTAATCTTGTGAA------TTTTGGCACTTTGGAAAGGTT
i gorGor5.CYUI01000141v1    I 3 C 0
s rheMac8.chr7              164255072 137 - 169600520 ---aagatatgaatgacaaagagaaaaaggatgaagaagaaaCTCCTGCACCTGTATATAGGGCCAAGTCAATCCTGGAAAGCTGGGTATGGGGCAAGCAACCAGGTAATCTTGTGAGT-----TTTTGGCACTTTGGAAAGCTT
i rheMac8.chr7              I 3 C 0
s macFas5.chr7              165575890 136 - 171882078 ---aagatatgaatgacaaagagaaaaaggatgaagaagaaaCTCCTGCACCTGTATATAGGGCCAAGTCAATCCTGGAAAGCTGGGTATGGGGCAAGCAACCAGGTAATCTTGTGAG------TTTTGGCACTTTGGAAAGCTT
i macFas5.chr7              I 3 C 0
s macNem1.NW_012011934v1       424728 136 +   2379783 ---AAGATATGAATGACAAAGAGAAAAAGGATGAAGAAGAAACTCCTGCACCTGTATATAGGGCCAAGTCAATCCTGGAAAGCTGGGTATGGGGCAAGCAACCAGGTAATCTTGTGAG------TTTTGGCACTTTGGAAAGCTT
i macNem1.NW_012011934v1    I 3 C 0
s cerAty1.NW_012001462v1       391515 136 +   4116138 ---AAGATATGAATGACAAAGAGAAAAAGGATGAAGAAGAAACTCCTGCACCTGTATATAGGGCCAAGTCAATCCTGGAAAGCTGGGTATGGGGCAAGCAACCAGGTAATCTTGTGAG------TTTTGGCACTTTGGAAAGCTT
i cerAty1.NW_012001462v1    I 3 C 0
s chlSab2.chr26              53825722 136 +  58131712 ---AAGATATGAATGACAAAGAGAAAAAGGATGAAGAAGAAACTCCTGCACCTGTATATAGGGCCAAGTCAATCCTGGAAAGCTGGGTATGGGGCAAGCAACCAGGTAATCTTGTGAG------TTTTGGCACTTTGGAAAGCTT
i chlSab2.chr26             I 3 C 0
s manLeu1.NW_012102332v1       438127 136 -   3636681 ---aagatatgaatgacaaagagaaaaaggatgaagaagaaaCTCCTGCACCCGTATATAGGGCCAAGTCAATCCTGGAAAGCTGGGTATGGGGCAAGCAACCAGGTAATCTTGTGAG------TTTTGGCACTTTGGAAAGCTT
i manLeu1.NW_012102332v1    I 3 C 0
s colAng1.NW_012115278v1       420107 136 -   4457520 ---AAGATATGAATGACAAAGAGAAAAAAGATGAAGAAGAAACTCCTGCACCTGTATATAGGGCCAAGTCAATTCTGGAAAGCTGGGTATGGGGCAAGCAACCAGGTAATCTTGTGAG------TTTTGGCACTTTGGAAAGCTT
i colAng1.NW_012115278v1    I 3 C 0
s cebCap1.NW_016107707v1       318829 136 -   2086007 ---AAGATCTGAATGACAAAGAGAAAAAAGATGAAGAAGAAACTCCTGCACCTGTATATAGGGCCAAATCAATTCTGGAGAGCTGGGTATGGGGCAGGCAACCAGGTAATCTTCTGAG------TTTTGGCAATTTCGAAAGCTT
i cebCap1.NW_016107707v1    I 3 C 0
s aotNan1.NW_018503298v1       382531 136 +   3831555 ---AAGATCTGAACGACAAAGAGAAAAAAGATGAAGAAGAAACGCCTGCACCTGTATATAGGGCCAAATCAATTCTGGAGAGCTGGGTATGGGGCAAGCAACCAGGTAATCTTCTGAG------TTTTGACAATTTTGAAAGCTT
i aotNan1.NW_018503298v1    I 3 C 0
s micMur3.chr9              116224062 136 + 116334831 ---AAGATCTGAATGACAAAGAGAAAAAGGATGAAGAAGATGCTCCTGCACCTGTTTACAGGGCCAAATCAATCCTGGAGAGCTGGGTATGGGGCAAGCAACCAGGTAATCTTCTAAG------TTTTGGTGCTTTGGAAAGCTT
i micMur3.chr9              I 114 C 0
s proCoq1.NW_012148396v1     13450642 136 +  16154928 ---AAGATCTGAATGACAAAGAGAAAAAGGATGAAGAAGATGCTCCTGCACCTGCTTACAGGGCCAAATCAATTCTGGAGAGCTGGGTATGGGGCAAGCAGCCAGGTAATCTTCTGAG------TTTTGATGCTTTGGAAAGCTT
i proCoq1.NW_012148396v1    I 3 C 0
s otoGar3.GL873689             378060 135 +   3845361 ---AAGATCTGAATGACAAAGAGAAAAAGGATGAAGAGGAAACTCCTGCACCTGTGTACAGGGCCAAGTCAATCCTGGAGAGCTGGGTATGGGGCAGGCAGCCAGGTAATCTTCTGAG-------TTTGGTGCTTTGGAAAACTT
i otoGar3.GL873689          I 3 C 0
s canFam3.chr3               59962524 142 -  91889043 AAGAAGATCTGAATGACAAAGAGAAAAAAGATGAAGAAGAAACTCCTGCACCTGCATGTAGGGCCAAATCAATCCTAGAGAGCTGGGTGTGGGGCAAGCAACCAGGTA---TTATGAACTGAGATTCTGGTACTTTGGAAAGCTT
i canFam3.chr3              C 0 C 0
e nomLeu3.chr6               70949888 1223 + 121039945 M
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=152073.000000
s hg38.chr15_KI270851v1_alt    167729 14 +    263054 GATCTGACACTCCC
s panTro5.chr15              73740378 14 -  83230942 GATCTGACGCTCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74043926 14 -  99763055 GATCTGACGCTCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        92817 14 -    281578 GATCTGACGCTCCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70951111 14 + 121039945 GATCTGACACTCCC
i nomLeu3.chr6              M 1223 C 0
s rheMac8.chr7              164255209 14 - 169600520 GATCTGATATTCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165576026 14 - 171882078 GATCTGATATTCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       424864 14 +   2379783 GATCTGATATTCCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       391651 14 +   4116138 GATCTGATACTCCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53825858 14 +  58131712 GATCTGATACTCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       438263 14 -   3636681 GATCTGATACTCCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       420243 14 -   4457520 GATCTGATACTCCT
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       318965 14 -   2086007 GATCTGACACTCCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       382667 14 +   3831555 TATCTAACACTCCT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116224198 14 + 116334831 GAACTGACACTCCC
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13450778 14 +  16154928 GATCTGACACTCCC
i proCoq1.NW_012148396v1    C 0 I 3790
s otoGar3.GL873689             378195 14 +   3845361 CATCTGACACTCTT
i otoGar3.GL873689          C 0 I 6
s canFam3.chr3               59962666 14 -  91889043 GATCTGGCACCTCT
i canFam3.chr3              C 0 C 0
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=12376.000000
s hg38.chr15_KI270851v1_alt    167743 1 +    263054 T
s panTro5.chr15              73740392 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74043940 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        92831 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70951125 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164255223 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165576040 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       424878 1 +   2379783 T
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       391665 1 +   4116138 T
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53825872 1 +  58131712 T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       438277 1 -   3636681 T
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       420257 1 -   4457520 T
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       318979 1 -   2086007 T
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       382681 1 +   3831555 T
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116224212 1 + 116334831 T
i micMur3.chr9              C 0 I 14849
s otoGar3.GL873689             378215 1 +   3845361 T
i otoGar3.GL873689          I 6 C 0
s canFam3.chr3               59962680 1 -  91889043 T
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=380530.000000
s hg38.chr15_KI270851v1_alt    167744 47 +    263054 TTCTAAATAACTTGAATGGATTCTT-----------AGTATTTTTTTGGTAACAATTT
s panTro5.chr15              73740393 47 -  83230942 TTCTAAATAACTTGGATGGATTCTT-----------AGTATTTTTTTGGTAACAATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74043941 47 -  99763055 TTCTAAATAACTTGGATGGATTCTT-----------AGTATTTTTTTGGTAACAATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        92832 47 -    281578 TTCTAAATAACTTGGATGGATTCTT-----------AGTATTTTTTTGGTAACAATTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70951126 46 + 121039945 TTCTAAATAACTTGGAAGGATTCTT-----------AATATTTTTTTGGTAACAA-TT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164255224 47 - 169600520 TTCTATATAACTTGGATGGATTCTT-----------AGTATTTTTTTGGTAACAATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165576041 47 - 171882078 TTCTATATAACTTGGATGGATTCTT-----------AGTATTTTTTTGGTAACAATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       424879 47 +   2379783 TTCTATATAACTTGGATGGATTCTT-----------AGTATTTTTTTGGTAACAATTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       391666 47 +   4116138 TTCTATATAACTTGGATGGATTCTT-----------AGTATTTTTTTGGTAACAATTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53825873 47 +  58131712 TTCTATATAACTTGGATGTATTCTT-----------AGTatttttttggtaacaattt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       438278 47 -   3636681 TTCTATATAACTTGGATGGATTCTT-----------AGTATTTTTTTGGTAACAATTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       420258 47 -   4457520 TTCTATATAACTTGGATGGATTCTT-----------AGTATTTTTTTGGTAACAATTT
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       318980 47 -   2086007 TTCTAAATAACTTGGATGGATTATT-----------CGTATTTTTTTGGTAACAATTT
i cebCap1.NW_016107707v1    C 0 I 12746
s aotNan1.NW_018503298v1       382682 47 +   3831555 TTCTAAATAACTTGGATGGATTATT-----------AGTATTTTTTTGGTAACAATTT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             378216 52 +   3845361 TTCTGAATACCTTTGGTGAACTTTTTGAGGGAGGAGGGTA------GGATCAGAATTT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59962681 44 -  91889043 TTCTAGATACCATAGATGGATTTTG--------------TTGTTGTTGTTACTGAATC
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=258505.000000
s hg38.chr15_KI270851v1_alt    167791 49 +    263054 TTTAAAAACTAATT-AAAAAATTTAAATattgtggtaaa----atatacatacc
s panTro5.chr15              73740440 49 -  83230942 TAAAAAAAGTAAAT-AAAAAATTTAAATattgtggtaaa----atatacatacc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74043988 49 -  99763055 TAAAAAAAGTAAAT-AAAAAATTTAAATattgtggtaaa----atatacatacc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        92879 49 -    281578 TTAAAAAAGTAAAT-AAAAAATTTAAATattgtggtaaa----atatacatacc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70951172 49 + 121039945 TATAAAAAGTAATT-AAAAAttttaaatattgtggtaaa----acatacatacc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164255271 43 - 169600520 TTAAAAATTTAATT----AAAtttaaatatt---gtaaa----atatacatacc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165576088 43 - 171882078 TTAAAAATGTAATT----AAAtttaaatatt---gtaaa----atatacatacc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       424926 43 +   2379783 TTAAAAATGTAATT----AAAtttaaatatt---gtaaa----atgtacatacc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       391713 43 +   4116138 TTAAAAATGTAATT----AAAtttaaatatt---gtaaa----atatacatacc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53825920 43 +  58131712 ttaaaaatgtaatt----aaatttaaatatt---gtaaa----atatacatacc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       438325 43 -   3636681 TTAAAAATGTAATT----AAAtttaaatatt---gtaaa----atatacatacc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       420305 46 -   4457520 TTAAAAATGTAATT-AAAAAAtttaaatatt---gtaaa----atatacatacc
i colAng1.NW_012115278v1    C 0 C 0
s aotNan1.NW_018503298v1       382729 50 +   3831555 AAAAAAATATAATTAAAAAGTTTTAAACattgtggtaaa----atatacatacc
i aotNan1.NW_018503298v1    C 0 I 14077
s otoGar3.GL873689             378268 49 +   3845361 TCTGaaatttaatt-taaatttttttGCATTGTGATAAA----ATACATGTAAC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59962725 53 -  91889043 TTAAAAGTTTAACT-TAAATTTTTTCATATCATGGTAAACTCTATATACATaca
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=483765.000000
s hg38.chr15_KI270851v1_alt    167840  80 +    263054 atgtaacttaccgtttt---------------------------------------------------------------------------------------------aaccagttttatgtgtacagttcattggcattaaatatattgacattgttgcccagccatcac
s panTro5.chr15              73740489  80 -  83230942 ataaaacttaccgtttt---------------------------------------------------------------------------------------------aaccatttttatgtgtagagttcattggcatgaagtatattcacattgttgcccagccatcac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74044037  80 -  99763055 ataaaacttaccgtttt---------------------------------------------------------------------------------------------aaccatttttatgtatagagttcattggcatgaagtatattcacattgttgcccagccatcac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        92928  80 -    281578 ataaaacttaccgtttt---------------------------------------------------------------------------------------------aaccatttttatgtgtacagttcattggcattaagtatattcacattgttgcccagccatcac
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70951221  80 + 121039945 gtaaaacttaacgtttt---------------------------------------------------------------------------------------------aaccatttttatgtgtacagttcattggcattaaatatattcacattgttacccagccatcac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164255314  80 - 169600520 ataaagcttaccgtttt---------------------------------------------------------------------------------------------aaccatttttaggtgtacagttcattggcattaagtatattcacatggttacccagccatcac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165576131  80 - 171882078 ataaagcttaccgtttt---------------------------------------------------------------------------------------------aaccatttttaggtgtacagttcattggcattaagtatattcacatggttacccagccatcac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       424969  80 +   2379783 ataaagcttaccgtttt---------------------------------------------------------------------------------------------aaccatttttaggtgtacagttcattggcattaagtatattcacatggttacccagccatcac
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       391756  80 +   4116138 ataaagcttaccgtttt---------------------------------------------------------------------------------------------agccatttttatgtgtacagttcattggcattaagtatattcacatggttacccagccatcac
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53825963  80 +  58131712 ataaagcttaccgtttt---------------------------------------------------------------------------------------------aaccatttttatgtgtacagttcattggcattaagtatattcacatggttacccagccatcac
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       438368  80 -   3636681 ataaagcttaccgtttt---------------------------------------------------------------------------------------------aaccatttttatatgtacagttcattggcattaagtatattcacatggttacccagccatcac
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       420351  80 -   4457520 ataaagcttaccgtttt---------------------------------------------------------------------------------------------aaccatttttatgtgtacagttcattggcattaagtatattcacatgattacccagccatcac
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             378317 173 +   3845361 ATAAAACTTACTATTTCTTTTTTCTTTTGTTTTTATTAAATTGTAGCTGTGTACATCAATGCAATCATGGGGTACAAAGGGCTGGTTTTATATAaaaaagtactattttaaatcacttttaagtgaacagttcaatggctttagataaattgacattgttgcccagccatcac
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59962778  58 -  91889043 ------------------------------------------------------------------------------------------------------------------atttttaaatatacag-tcagggacattaaacatgttcacattgttttgtaatcatcac
i canFam3.chr3              C 0 I 21503
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=389055.000000
s hg38.chr15_KI270851v1_alt    167920  69 +    263054 GCTTGACTAA--------------------------------ttagagacagaatctcactgtgttgcccaggccg-------------------------------gtctta---tactcctggcttcacagga
s panTro5.chr15              73740569  69 -  83230942 GCTTGACTAA--------------------------------ttagagacagaatctcactgtgttgcccaggctg-------------------------------gtctta---tactcctggcttcaaggga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74044117  69 -  99763055 GCTTGACTAA--------------------------------ttagagacagaatctcactgtgttgcccaggctg-------------------------------gtctta---tactcctggcttcaaggga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        93008  68 -    281578 GCTTGACTAG--------------------------------Ttagagacagaatctcactgtgttg-ccaggctg-------------------------------gtctta---tactcctggcttcaaggga
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70951301  72 + 121039945 GCTTGACTAA--------------------------------ttagagacagaatctcactgtgttgcccaggctg-------------------------------gttctgtgctactcctggcttcagggga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164255394  69 - 169600520 AGTTGACTAA--------------------------------ttaaagacagaatctcactgtgttgtccaggctg-------------------------------gtctta---tactcctggcttcaaggga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165576211  69 - 171882078 AGTTGACTAA--------------------------------ttaaagacagaatctcactgtgttgtccaggctg-------------------------------gtctta---tactcctggcttcaaggga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       425049  69 +   2379783 AGTTGACTAA--------------------------------ttaaagacagaatctcactgtgttgtccaggctg-------------------------------gtctta---tactcctggcttcaaggga
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       391836  69 +   4116138 AGTTGACTAA--------------------------------ttaaagacagaatctcactgtgttgtccaggctg-------------------------------gtctta---tactcctggcttcaaggga
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53826043  69 +  58131712 AGTTGACTAA--------------------------------Ttaaagacagaatctcactgtgttgtccaggctg-------------------------------gtctta---tactcctggcttcaaggga
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       438448  69 -   3636681 AGTTGACTAA--------------------------------ttaaagacagaatctcactgtgttgtccaggctg-------------------------------gtctta---tactcctggcttcaaggga
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       420431  69 -   4457520 AGTTGACTAA--------------------------------ttaaagacagaatctcactgtgttgtccattctg-------------------------------gtctta---tactcctggcttcaaggga
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             378490 132 +   3845361 ccaccatccacctctaggattttttctatttctctctcttttttagagacaggatcttgctctgtttctcaggctggaaggcagtggtacagtcacagttcagtgcagcctga---aactcctggactcaaggga
i otoGar3.GL873689          C 0 I 170
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=897337.000000
s hg38.chr15_KI270851v1_alt    167989 170 +    263054 tcttcctgcctcagactcctgagttgctgagatttcggatgtgagccatcgcacctggcactatgtgtaactttttgaggaagcagtaaactg-ttttccacagtggctacattgttttacattcttgcagcagtatactaaggttccaatttctccacaccctcaccaac
s panTro5.chr15              73740638 170 -  83230942 tctccctgcctcacactcctgagttgctgcgatttcaggtgtgagccatcgcacctggcActacgtgtaactgtttgaggaagcagtaaactg-ttttccacagtggctacattgttttatattcttgcagcggtatactaaggttcccatttctccacaccctcaccaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74044186 170 -  99763055 tctccctgcctcacactcctgagttgctgcgatttcaggtgtgagccatcgcacctggcActacgtgtaactgtttgaggaagcagtaaactg-ttttccacagtggctacattgttttatattcttgcagcggtatgctaaggttcccatttctccacaccctcaccaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        93076 170 -    281578 tctccctgcctcacactcctgagttgctgagatttcaggtgtgagccatcgcacctggcActacgtgtagctgtttgaggaagcagtaaactg-ttttccacagtggctacattgttttatattcttgcagcggtatgctaaggttcccatttctccacaccctcaccaac
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70951373 170 + 121039945 tcttcctgcctcagactcctgagttgctgagatttcaggtgtgagccatcgcacctggcACTACCTGtaactttttgaggaagcagtaaactg-ttttccacagtggctacattgttttacattcttgcagcagtatactaaggttccaatttcttcatgccctcaccaac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164255463 149 - 169600520 tcttcctgcctcagactcctgagttgctgagatttcaggtgTAA--------------------ATG-aaatttttgaggaaccagtaaactg-ttttccacagtggctacattgttttacattcttgcagcagtataccaaggttccaatttctccatatcctcaccaac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165576280 149 - 171882078 tcttcctgcctcagactcctgagttgctgagatttcaggtgTAA--------------------ATG-aaatttttgaggaaccagtaaactg-ttttccacagtggctacattgttttacattcttgcagcagtataccaaggttccaatttctccatatcctcaccaac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       425118 170 +   2379783 tcttcctgcctcagactcctgagttgctgagatttcaggtgtaagccattgtacctggcActacatgtaactttttgaggaaccagtaaactg-ttttccacagtggctacattgttttacattcttgcagcagtataccaaggttccaatttctccatatcctcaccaac
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       391905 170 +   4116138 tcttcctgcctcagactcctgagttgctgagatttcaggtgtaagccattgtacctggcActacatgtaactttttgaggaaccagtaaacta-ttttccacagtggttacattgttttacattcttgcagcagtataccaaggttccaatttctccatatcctcaccaac
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53826112 170 +  58131712 tcttcctgcctcagactcctgagttgctgagatttcaggtgtaagccattgtacctggcactacatgtaactttttgaggaaccagtaaactg-ttttccacagtggttacattgttttacattcttgcagcagtataccaaggttccaatttctccataccctcaccaac
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       438517 170 -   3636681 tcttcctgcctcagactcctgagttgctgagatttcaggtgtaagccattgtacctggcATTACATGtaactttttgaggaaccagtaaactg-ttttccacagtggctacattgttttacattcttgcagcagtataccaaggttccaatttctccatatcctcaccaac
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       420500 171 -   4457520 tcttcctgcctcagactcctgagttgctgagatttcaggtgtaagccattgtacctggcactacatgtaactttttgaggagccagtaaactgtttttccacagtggctacattgttttacattcttgcagcagtctaccaaggttccaatttctccacaccctcaccaac
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             378622 170 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=941110.000000
s hg38.chr15_KI270851v1_alt    168159 167 +    263054 actttttgttttctgatgatagccatcctaatttgtgtgagtaggtacagcatctcatt--gttttgatttg------------------------tatttccctgt----------------------------------tgattagtcatgctga--gcatctttttacatgcttattggccatttgtatacattcactggagaaatgtctattcaaa-----tcctttgcc--------
s panTro5.chr15              73740808 167 -  83230942 actttttgttttctgatgatagccatcctaatttgtgtgagtaggtacagcatctcatt--gttttgatttg------------------------catttccctgt----------------------------------tgattagtcatgctga--gcatctttttacatgcttattgaccatttgtatacattcactggagaaatgtctattcaaa-----tcctttgcc--------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74044356 167 -  99763055 actttttgttttctgatgatagccatcctaatttgtgtgagtaggtacagcatctcatt--gttttgatttg------------------------catttccctgt----------------------------------tgattagtcatgctga--gcatctttttacatgcttattgaccatttgtatacattcactgcagaaatgtctattcaaa-----tcctttgcc--------
i panPan2.chr15             C 0 I 21
s gorGor5.CYUI01000141v1        93246 167 -    281578 actttttgttttctgatgatagccatcctaagttgtgtgagtaggtatagcatctcatt--gttttgatttg------------------------catttccctgt----------------------------------tgattagtcatgctga--gcatctttttacatgcttattgaccatttgtatacattcactggagaaatgtctattcaaa-----tcctttgcc--------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70951543 167 + 121039945 actttttcttttctgatgatagccatcctaatttgtgtgagtaggtacagcatctcatt--gttttgatttg------------------------tattttcctgt----------------------------------tgattagtcatgctga--gcatctttttacatgcttattgaccgttcgtatacattgactggagaaatgtctattcata-----tcctttgcc--------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164255612 174 - 169600520 acttttttttttctgatgatagccatcctaatttttgtgagtaggtacagcatctcatt--gttttgatttgc-----------------atttcccatttccctgt----------------------------------tgattagtcattctga--gcatctttttacatgcttattgaccattactatacattcactggagaaatgtctattcaaa-----tcctttgcc--------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165576429 174 - 171882078 actttttcttttctgatgatagccatcctaatttttgtgagtaggtacagcatctcatt--gttttgatttgc-----------------atttcccatttccctgt----------------------------------tgattagtcattctga--gcatctttttacatgcttattgaccattactatacattcactggagaaatgtctattcaaa-----tcctttgcc--------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       425288 174 +   2379783 actttttcttttctgatgatagccatcctaatttttgtgagtaggtacagcatctcatt--gttttgatttgc-----------------atttcccatttccctgt----------------------------------tgattagtcattctga--gcatctttttacatgcttattgaccattactatacattcactggagaaatgtctattcaaa-----tcctttgcc--------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       392075 174 +   4116138 actttttcttttctgatgatagccatcctaatttttgtgagtaggtacagcatctcatt--gttttgatttgc-----------------atttcccatttccctgt----------------------------------tgattagtcattctga--gcatctttttacatgcttattgaccattactatacattcactggagaaatgtctattcaaa-----tcctttgcc--------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53826282 174 +  58131712 actttttcttttctgatgatagccatcctaatttttgtgagtaggtacagcatctcatt--gttttgatttgc-----------------atttcccatttccctgt----------------------------------tgattagtcattctga--gcatctttttacatgcttattgaccattactatacattcactggagaaatgtctattcaaa-----tcctttgcc--------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       438687 174 -   3636681 actttttcttttctgatgatagccatcctaatttttgtgagtaggtacagcatctcatt--gttttgatttgc-----------------atttcccatttccctgt----------------------------------tgattagtcattctga--gcatctttttacatgcttattgaccattactatacattcactggagaaatgtctattcaaa-----tcctttgcc--------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       420671 174 -   4457520 actttttcttttctgatgatagccatcctaatttttgtgagtaggtacagcatctcatt--gttttgatttgc-----------------atttcccatttccctgt----------------------------------tgattagtcattctga--gcatctttttacatgcttattgaccattagtatacattcactggagaaatgtctactcaaa-----tcctttgcc--------
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             378792 230 +   3845361 ATTCTTTGCTTCTTATTTTTATCTTGCATAATTT-----AGTTTTTACAATGCCTGATTCATTTttaatttttaaaatacacatggaagaaatgactattttcttataaagaatgatagactgtaaagtagaactttgacctgacctcccatcccaattgcagttttctac-tgagagttagccactgttaccagtttgctg------tgcatgttcagactttttcctttgcataggcata
i otoGar3.GL873689          I 170 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=955182.000000
s hg38.chr15_KI270851v1_alt    168326 211 +    263054 -------cGttttttgtt--tttttttttttttggggagatggagtttggctcttgttgcc-------cacgctggagtgcagt-ggtgcaatcttggctcattgcaacctccacctcccaggttcaagtgattctcctgcctcatcctcccgagtagctgggattacaggtgtccgccactgtgcctggctaattttttgtatttttagtagagacgaagtttcact
s panTro5.chr15              73740975 209 -  83230942 -------TGGtttttttt--ttttttttttttt--ggagatggagtttggctcttgttgcc-------caggctggagtgcagt-ggtgcaatcttggctcattgcaatctccacctcccaggttcaagtgattctcctgcctcatcctcccgagtagctgggattacaggtgtccgccaccatgcctggctaattttttgtatttttagtagagacgaagtttcact
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        93413 204 -    281578 -------------TGttt--ttttttttttttt--ggagatggagtttggctcttgttgcc-------caggctggagtgcagtgggtgcaatcttggctcattgcaacctccacctcccaggttcaagtgattctcctgcctcatcctcccgagtagctgggattacaggtgtccgccaccatgcctggctaattttttgtatttttagtagagatgaagtttcact
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70951710 210 + 121039945 -------cGttttttttt--ttttttttttttt-gggagacggagtttggctcttgttgcc-------caggctggaatgcagt-ggtgcaatcttggctcattgcaacctccacctcccaggttcaagtgattctcctgactcagcctcccgagtagctgggattacaggtgtccgccaccgtgcctggctaattttttgtgtttttagtagagacggggtttcact
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164255786 200 - 169600520 ----------------ca--tttttttttcttt--ggagacagagtttggctcttgttgcc-------caggctggagtgcagt-ggtgcaatctcggctcattgcaagctctgcctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggtgcctgccactgtgcctggctaattttttgtatttctagtagagacaaggtttcact
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165576603 200 - 171882078 ----------------ca--tttttttttcttt--ggagacagagtttggctcttgttgcc-------caggctggagtgcagt-ggtgcaatctcggctcattgcaagctctgcctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggtgcctgccactgtgcctggctaattttttgtatttctagtagagacaaggtttcact
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       425462 200 +   2379783 ----------------ca--tttttttttcttt--ggagacagagtttggctcttgttgcc-------caggctggagtgcagt-ggtgcaatcttggctcattgcaagctctgcctcctgagttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggtgcctgccactgtgcctggctaattttttgtatttctagtagagacgaggtttcact
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       392249 200 +   4116138 ----------------ca--tttttttttcttt--ggagacagagtttggctctcgttgcc-------caggctggagtgcagt-ggtgcaatctcggctcattgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggtgcctgccactgtgcctggctaattttttgtatttttagtagagacgaggtttcact
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53826456 202 +  58131712 ----------------catttttttttttcttt--ggagacagagtttggctcttgttgcc-------caggctggagtgcagt-ggtgcaatcttggctcattgcaacctctgcctgctgggttcaagtgattctcttgcctcagcctcccgagtagctgggattataggtgtctgccaccgtgcctggctaattttttgtatttttagtagagacgaggtttcact
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       438861 200 -   3636681 ----------------ca--tttttttttcttt--ggagacagagtttggctctcgttgcc-------caggctggagtgcagt-ggtgcaatctcggctcattgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggtgcctgccactgtgcctggctaattttttgtatttttagtagagacgaggtttcact
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       420845 200 -   4457520 ----------------ca--tttttttttcttt--ggagacagagtttggctcttgttgcc-------caggctggagtgcagt-ggtgcaatctcggctcattgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggtgcctgccaccgtgcctggctaattttttgtatttttagtagagacgaggtttcacT
i colAng1.NW_012115278v1    C 0 I 18
s otoGar3.GL873689             379022 185 +   3845361 cGttttttgtatttttta--tttttttattttt----------atttttttttttGGTGACAGTGAGTctgggtagagtgcttt-ggc---atcatagctcagaattacctcaaaagactgggctcaagggatactcttttctcagcttaccg--------------------------acaacgacaggctagtttttc-tgtttttagtagagatagggtcttgct
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74044523  21 -  99763055 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=463798.000000
s hg38.chr15_KI270851v1_alt    168537 104 +    263054 atgttagccaggctggtcttgaactcctgacttcaggtgatccacccaccttggcctcctaaagtgct-gtattacaggtatgagccactgtgcct-ggccCTTTT
s panTro5.chr15              73741184 105 -  83230942 atgttagccaggctggtcttgaactcctgacctcaggtgatccacccaccttggcctcctaaagtgctggtattacaggcatgagccactgcacct-ggccCTTTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        93617 105 -    281578 atgttagccaggctggtcttgaactcctgacctcaggtgatccacccaccttggcctcctaaagtgctggtattacaggcatgagccactgcacct-ggccCTTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70951920 105 + 121039945 atgttggccaggctggtgttgaactcctgacctcaggtgatccacccaccttggcctcctaaagtgctggtattacagggatgagccactgtgcct-ggccCTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164255986 105 - 169600520 atgttggccaggctggtcttgaactcctgacctcaagtgatccacccacctcggcctcccaaagtgctggtattacaggcatgagccactgcgcct-ggccctttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165576803 105 - 171882078 atgttggccaggctggtcttgaactcctgacctcaagtgatccacccacctcggcctcccaaagtgctggtattacaggcatgagccactgcgcct-ggccctttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       425662 105 +   2379783 atgttggccaggctggtcttgaactcctgacctcaagtgatccacccacctcggcctcccaaagtgctggtattacaggcatgagccactgcgcct-ggccctttt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       392449 105 +   4116138 atgttggccaggctggtcttgaactcctgacctcaagtgatccacccacctcggcctcccaaagtgctggtattacaggcatgagccactgcgcct-ggccctttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53826658 105 +  58131712 atgttggccaggctggtcttgaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctggtattacaggcatgagccactgcgcct-ggccCTTTT
i chlSab2.chr26             C 0 I 98
s manLeu1.NW_012102332v1       439061 105 -   3636681 atgttggccaggctggtcttgaactcctgacctcaagtgatccacccacctcggcctcccaaagtgctggtattacaggcatgagccactgcgcct-ggccctttt
i manLeu1.NW_012102332v1    C 0 C 0
s otoGar3.GL873689             379207 102 +   3845361 ---ttgctcgggctagtctcaaactcctaagcttagacaatctacccaccttgccctctcagagtgcctggatgacagatgtgagccaccaagccTCAGTTCATA-
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74044523  21 -  99763055 I
e colAng1.NW_012115278v1       421045  18 -   4457520 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=3960.000000
s hg38.chr15_KI270851v1_alt    168641 2 +    263054 -GC
s panTro5.chr15              73741289 2 -  83230942 -GC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        93722 2 -    281578 -GC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70952025 2 + 121039945 -GC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164256091 2 - 169600520 -gc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165576908 2 - 171882078 -gc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       425767 2 +   2379783 -gc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       392554 2 +   4116138 -gc
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       439166 2 -   3636681 -gc
i manLeu1.NW_012102332v1    C 0 C 0
s otoGar3.GL873689             379309 2 +   3845361 GG-
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74044523 21 -  99763055 I
e colAng1.NW_012115278v1       421045 18 -   4457520 I
e chlSab2.chr26              53826763 98 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=3600.000000
s hg38.chr15_KI270851v1_alt    168643 1 +    263054 C
s panTro5.chr15              73741291 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        93724 1 -    281578 C
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70952027 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164256093 1 - 169600520 c
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011934v1       425769 1 +   2379783 c
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       392556 1 +   4116138 c
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       439168 1 -   3636681 c
i manLeu1.NW_012102332v1    C 0 C 0
s otoGar3.GL873689             379311 1 +   3845361 C
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74044523 21 -  99763055 I
e colAng1.NW_012115278v1       421045 18 -   4457520 I
e chlSab2.chr26              53826763 98 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I
e macFas5.chr7              165576910 0 - 171882078 C

a score=-2113.000000
s hg38.chr15_KI270851v1_alt    168644 1 +    263054 -C
s panTro5.chr15              73741292 1 -  83230942 -t
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        93725 1 -    281578 -t
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70952028 1 + 121039945 -t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164256094 1 - 169600520 -c
i rheMac8.chr7              C 0 T 97801
s otoGar3.GL873689             379312 1 +   3845361 A-
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74044523 21 -  99763055 I
e colAng1.NW_012115278v1       421045 18 -   4457520 I
e manLeu1.NW_012102332v1       439169 0 -   3636681 C
e cerAty1.NW_012001462v1       392557 0 +   4116138 C
e macNem1.NW_012011934v1       425770 0 +   2379783 C
e chlSab2.chr26              53826763 98 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I
e macFas5.chr7              165576910 0 - 171882078 C

a score=113827.000000
s hg38.chr15_KI270851v1_alt    168645 176 +    263054 tttcttttttttttttttttttttggagacagagtcttgttctgtcacccaggctggagtacagtggcatgatcttggcttactgcaacctccaccttccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgggcaccaccacacccagctaatt
s panTro5.chr15              73741293 175 -  83230942 ttttttttttttttttttttcttt-gagacggagtcttgttctgtcgcccaggctggagtacagtggcgtgatcttggctcactgcaacctccgcttcccgggttcatgccattctcctgcctcagcctccccagtagctgggactacaggcgtgcaccaccacacctggctaatt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        93726 175 -    281578 ttttttttttttttttttttcttt-gagacggagtcttgttctgtcgcccaggctggagtacagtggcgtgatcttggctcactgcaacctccgcttcccgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcgtgcaccaccacgcctggctaatt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70952029 170 + 121039945 ttttttttttttttttttt------gagatggagtcttgttctgttgcccaggctggagtacagtggcgtgatctcggctcactgcaatctccacttcccgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggtgtgcaccaccatgcccagctaatt
i nomLeu3.chr6              C 0 C 0
s otoGar3.GL873689             379313 163 +   3845361 ---TACttttttttctttt------tagacagattctcactgtgtcgcccttggtagagtaccgtggc---atcacagctcatagcaatcccaaactcatgtgcttaagcagttctcttgcctcagcctcctaagtagctgggattataggtgtccaccacaacgcacagctatt-
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74044523  21 -  99763055 I
e colAng1.NW_012115278v1       421045  18 -   4457520 I
e manLeu1.NW_012102332v1       439169   0 -   3636681 C
e cerAty1.NW_012001462v1       392557   0 +   4116138 C
e macNem1.NW_012011934v1       425770   0 +   2379783 C
e rheMac8.chr7              164256095 97801 - 169600520 T
e chlSab2.chr26              53826763  98 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I
e macFas5.chr7              165576910   0 - 171882078 C

a score=1883.000000
s hg38.chr15_KI270851v1_alt    168821 1 +    263054 C
s panTro5.chr15              73741468 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        93901 1 -    281578 C
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70952199 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165576910 1 - 171882078 c
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              53826861 1 +  58131712 c
i chlSab2.chr26             I 98 C 0
s colAng1.NW_012115278v1       421063 1 -   4457520 c
i colAng1.NW_012115278v1    I 18 C 0
s otoGar3.GL873689             379476 1 +   3845361 t
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74044523 21 -  99763055 I
e manLeu1.NW_012102332v1       439169 0 -   3636681 C
e cerAty1.NW_012001462v1       392557 0 +   4116138 C
e macNem1.NW_012011934v1       425770 0 +   2379783 C
e rheMac8.chr7              164256095 97801 - 169600520 T
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=45542.000000
s hg38.chr15_KI270851v1_alt    168822 16 +    263054 CATTTTTTAAT---------------------------TGAGT-----
s panTro5.chr15              73741469 16 -  83230942 CATTTTTTAAT---------------------------TGAGT-----
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        93902 16 -    281578 CATTTTTTAAT---------------------------TGAGT-----
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70952200 43 + 121039945 CATTTTTTAATGGAATTAAAAAACAAAAAACTGCACAAGGAGT-----
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165576911 16 - 171882078 cattttttaat---------------------------taagt-----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       425770 16 +   2379783 cattttttaat---------------------------taagt-----
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       392557 16 +   4116138 cattttttaat---------------------------taagt-----
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53826862 16 +  58131712 cattttttaat---------------------------taagt-----
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       439169 16 -   3636681 cattttttaat---------------------------taagt-----
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       421064 16 -   4457520 cattttttaat---------------------------taagt-----
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             379477 20 +   3845361 -tgttgttgtt---------------------------ttagttgtca
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74044523 21 -  99763055 I
e rheMac8.chr7              164256095 97801 - 169600520 T
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=52393.000000
s hg38.chr15_KI270851v1_alt    168838 9 +    263054 TTTTTGTTT
s panTro5.chr15              73741485 9 -  83230942 TTTTTGTTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        93918 9 -    281578 TTTTTGTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70952243 9 + 121039945 TTTTTGTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164158294 9 - 169600520 tttttgttt
i rheMac8.chr7              T 97801 C 0
s macFas5.chr7              165576927 9 - 171882078 tttttgttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       425786 9 +   2379783 tttttgttt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       392573 9 +   4116138 tttttgttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53826878 9 +  58131712 tttttgttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       439185 9 -   3636681 tttttgttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       421080 9 -   4457520 tttttgttt
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             379497 9 +   3845361 ttgttgttt
i otoGar3.GL873689          C 0 I 1760
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74044523 21 -  99763055 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=92560.000000
s hg38.chr15_KI270851v1_alt    168847 19 +    263054 TGGGTTATAGGAGTTCCTT
s panTro5.chr15              73741494 19 -  83230942 TGGGTTATAGGAGTTCTTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        93927 19 -    281578 TGGATTATACGAGTTCTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70952252 19 + 121039945 TGGGTTATAGGAGTTCTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164158303 19 - 169600520 tgggttataggagttcttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165576936 19 - 171882078 tgggttataggagttcttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       425795 19 +   2379783 tgggttataggagttcttt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       392582 19 +   4116138 tgggttataggagttcttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53826887 19 +  58131712 tgggttacaggagttcttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       439194 19 -   3636681 tgggttataggagttcttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       421089 19 -   4457520 tgggttataggagttcttt
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             379506 1760 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74044523 21 -  99763055 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=670078.000000
s hg38.chr15_KI270851v1_alt    168866 133 +    263054 ATCATGGATGGACTTTCATAATCTCTTCCCTTTCTCCAACCCAGTAAAACCCATATATTTATTCTTTGCTTAC-TTTTTT-GTGTGTAATTGAATTTTTTAAAATGTCTGATGCATTTTCGTTCCAATTAAAAAT
s panTro5.chr15              73741513 132 -  83230942 ATCATGGATGGACTTTCATAATCTCTTCCCTTTATCCAGCCCAGTAAAAACCATACATTTATTCTTTGCTTAC-TTTTTT-TTGTGTAATTCAATTTTTT-AAATGTCTAATGCATTTTCGTTCCAATTAAAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74044544 131 -  99763055 ATCATGGATGGACTTTCATAATCTCTTCCCTTTATCCAGCCCAGTAAAAACCATACATTTATTCTTTGCTTAC-TTTTTT--TGTGTAATTCAATTTTTT-AAATGTCTAATGCATTTTCGTTCCAATTAAAAAT
i panPan2.chr15             I 21 C 0
s gorGor5.CYUI01000141v1        93946 132 -    281578 ATCATGGATGGACTTTCATAATCTCTTCCCTTTATCCAGCCCAGTAAAACCCATACATTTATTCTTTGCTTAC-CTTTTT-TTGTGTAATTCAATTTTTT-AAATGTCTAATGCATTTTCGTTCCAATTAAAAAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70952271 133 + 121039945 ATCATGGATGGACTTTCATAATCTCTTCCCTTTATCCAACCTAGTAAAACCCAAATATTTATTCTTTGCCTCC-TTTTTTTTTGTGTAATTCAATTTTTT-AAATGTCTGATGCATTTTCGTTCCAATTAAAAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164158322 132 - 169600520 atCATGGATGGACTTTCATAATCTCTTCCCTTTATCCAACCCTATAAAACCCATATATTTATTCTTTGCTTGC-TTTATT-TTGTATAAATCAATTTTTT-AAATGTCTGATGCATTTTCTTTCCAATTAAAAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165576955 131 - 171882078 atTGTGGATGGA-GTTCATAATCTTTTGCCTTTATCCAAACCAGTAAAACCCATATATTTGTTCTATGCATAC-TTTTTT-TTGTGTAATTCAATTTTTG-AAATGTCTGATGCATTTTTGTTCCAATTAAAAAT
i macFas5.chr7              C 0 I 1574
s macNem1.NW_012011934v1       425814 131 +   2379783 atTGTGGATGGA-GTTCATAATCTTTTGCCTTTATCCAAACCAGTAAAACCCATATATTTGTTCTATGCATAC-TTTTTT-TTGTGTAATTCAATTTTTG-AAATGTCTGATGCATTTTTGTTCCAATTAAAAAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       392601 132 +   4116138 atTGTGGATGGACTTTCATAATCTTTTGCCTTTATCCAAACCAGTAAAACCCATATATGTATTCTATGCATAC-TTTTTT-TTGTGTAATTCAATTTTTG-AAATGTCTGATGCATTTTTGTTCCAATTAAAAAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53826906 132 +  58131712 atTGTGGATGGACTTTCATAATCTTTTGCCTTTATCCAAACCAGTAAAACCCATATATTTATTCTATGCTTAC-TTTTTT-TTGTGTAATTCAATTTTTG-AAATGTCTGATGCATTTTTGTTCCAATTAAAAAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       439213 133 -   3636681 atTGTGGATGGACTTTCATAATCTTTTGCCTTTATCCAAACCAGTAAAACCCATATATTTATTCTATGCATACTTTTTTT-TTGTGTAATTCAATTTTTG-AAATGTCTGATGCATTTTTGTTCCAATTAAAAAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       421108 132 -   4457520 atCGTGGATGGACTTTCGTAATCTCTTGCCTTTATCCAAACCAGTAAAACCCATGTATTTATTCTCTGCTTAC-TTTTGT-TTGTGTAATTCAGTTTTTT-AAATGTCTGATGCATTTTTGTTCCAATTAAAAAT
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             379506 1760 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=187608.000000
s hg38.chr15_KI270851v1_alt    168999 45 +    263054 ATACATCAAATAAATGTTTTCTTATAAAAATGTATGGATTATAAA
s panTro5.chr15              73741645 40 -  83230942 atacatagaata-----tttcttataaaaatgtatagattataaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74044675 40 -  99763055 ATACATAGAATA-----TTTCTTATAAAAATGTATAGATTATAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        94078 40 -    281578 ATACATAGAATA-----TTTCTTATAAAAATGTATAGGTTATAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70952404 40 + 121039945 ATACGTAGTATA-----Tttcttataaaaatgtatagattataaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164158454 45 - 169600520 ATACATGGAATAAATGTTTTCTTATAAAAATGTATAGATTATAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165578660 45 - 171882078 aTACATGGAATAAATGTTTTTTTATAAAAATATATAGATTATAAA
i macFas5.chr7              I 1574 C 0
s macNem1.NW_012011934v1       425945 45 +   2379783 ATACATGGAATAAATGTTTTTTTATAAAAATATATAGATTATAAA
i macNem1.NW_012011934v1    C 0 T 86084
s cerAty1.NW_012001462v1       392733 44 +   4116138 atacatggaataaatgtttttttataaaaatacatagactataa-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53827038 44 +  58131712 ATACATGGAATAAATGTTGTTTTATAAAAATATATAGATTATAA-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       439346 44 -   3636681 atacatggaataaatgtttttttataaaaatacatagattataa-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       421240 44 -   4457520 ATACATGGAATAAAT-TTTTTTAATAAAAATATATAGATTATAAA
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             379506 1760 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=2548.000000
s hg38.chr15_KI270851v1_alt    169044 1 +    263054 A
s panTro5.chr15              73741685 1 -  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74044715 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        94118 1 -    281578 A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70952444 1 + 121039945 a
i nomLeu3.chr6              C 0 C 0
s cerAty1.NW_012001462v1       392777 1 +   4116138 a
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53827082 1 +  58131712 A
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       439390 1 -   3636681 a
i manLeu1.NW_012102332v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             379506 1760 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e colAng1.NW_012115278v1       421284 0 -   4457520 C
e macNem1.NW_012011934v1       425990 86084 +   2379783 T
e rheMac8.chr7              164158499 0 - 169600520 C
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I
e macFas5.chr7              165578705 0 - 171882078 C

a score=1428391.000000
s hg38.chr15_KI270851v1_alt    169045 297 +    263054 GCAGAAATTTCACCTGGCTGCCCACCCCAATTTCAG-TTTTCCTCTAAGAGTTAGCCACTATTATCCCTTCAGAGTGGATATTCAGGCTTTTCTTTCCTGGCATG----GACATACATATGTAAATGTACATATataaaaataattagtgacaccatgcatggtagctcacgcctgtaatcccagcactttgggacgctgaggtgagagaattgcttgaggccatcagtttgaagctgcagtgatctatgattgtgcctctacactccagcctgggtgacagggtgagaccctgtctcttaa---
s panTro5.chr15              73741686 293 -  83230942 gcagaaatttcacctgactgcccaccccaatttcag-ttttcctctaagagttagccactattatcccttcggtgtggatattcagggttttttttccttgcatg----gacatacatatgtaaatgtacatatataaaaataATTTGTGACACCCGCcatggtagctcacgcctgtaatcccagcactttgggatgctgaggtgagagaattgcttgaggccagcagtttgcggctgcagtgatctatgattgtgcctctacactccagcctgggtgacagggt----ctctgtttcttaa---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74044716 292 -  99763055 GCAGAAATTTCACCTGACTGCCCACCCCAATTTCAG-TTTTCCTCTAAGAGTTAGCCACTATTATCCCTTCGGTGTGGATATTCAGGGTTTTTTTTCCTTGCATG----GACATACATATGTAAATGTACATACATAAAAATAATTTGTGACgcccgccatggtagctcacgcctgtaatcccagcactttgggatgctgaggtgagagaattgcttgaggccagcagtttgcggctgcagtgatctatgattgtgcctctacactccagcctgggtgacagggt----ctctgtttctt-a---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        94119 294 -    281578 GCAGAAATTTCACCTGACTGCCCACCCCAATTTCAGTTTTTCCTCTAAGAGTTAGCCACTATTATCCCTTCGGTGTGGATATTCAGGGTTTTTTTTCCTTGCATG----GACATACATATGTAAATGTACATATATAAAAATAATTTGTGACgcccgccatggtagctcacacctgtaatcccagcactttgggatgctgaggtgagagaattgcttgaggccagcagtttgcggctgcagtgatctatgattgtgcctctacactccagcctgggtgacagggt----ctctgtctcttaa---
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70952445 297 + 121039945 gcaaaaatttcacctgactgctcaccccaatttcag-ttttcctgtaagagtgagccactgttatcccttcagtgtggatattcagacttttttttccttgcatg----gacatacatatgtaaatgtacatatataaaaataATTTGTGACAccaggcatggtagctcacgcctgtaatcccagcactttgggacactgaggtgagagaattgcttgaggccagcagtttgtggctgcagtgatctatgattatgccacgacactccagcctgggtgacagggtgagaccctgcctcttaa---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164158499 294 - 169600520 GTAGAGATTTCACCTGACTGCCCACCCCAATTTCAG-TTTTCCTCCAAGAGTTAGCCAGTATTATCCCTTCGGTGTGGCTATTCAGACTTACTTTTCCTTGCATG----GACATACATGTGTAAATGTACATGTATTAACATAATTTTTGATgccaggcatggtagctcatgcctggaattccagcactttgggaccttgaggtgagagaattgcttgaggccagcggttggaagctgcagtgaac--tgattgtgccgctacactccagcatgggtgacagggtaagaccctgtgtctt-a---
i rheMac8.chr7              C 0 I 99179
s macFas5.chr7              165578705 281 - 171882078 GCAGAAATTTCACCTGACTGCCCACCCAAATTTCAG-TTTTCCTCTAAGAGTTAGCCACTATTATCCCTTCGGTGTGGATATTCAGACTTTCTTTTCCTTGCATG----GACGTACATGTGTAAATGTACATATATAAAAATAATTTGTGACACCAggcttg--------cacctgtaatcccagcactttgggacgctgaggtgagagaattacttgaggccagcagtttgaagctgcagtgatctatgattgtgcctcta--------cctgggtgacagagtcagaccctgtctctt-aa--
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011934v1       339906 294 +   2379783 GTAGAGATTTCACCTGACTGCCCACCCCAATTTCAG-TTTTCCTCCAAGAGTTAGCCAGTATTATCCCTTCAGTGTGGCTATTCAGACTTACTTTTCCTTGCATG----GACATACATGTGTAAATGTACATGTATTAACATAATTTTTGATgccaggcatggtagctcatgcctggaattccagcactttgggaccgtgaggtgagagaattgcttgaggccagcggttggaagctgcagtgaac--tgattgtgccgctacactccagcatgggtgacagggtaagaccctgtgtctt-a---
i macNem1.NW_012011934v1    T 86084 C 0
s cerAty1.NW_012001462v1       392778 281 +   4116138 gcagaaatttcacctgactgcccacccaaatttcag-ttttcctctaagagttagccactattatcccttcggtgtggatattcagactttcttttccttgcatg----gacgtacatgtgtaaatgtacatatataaaaataATTTGTGACACCAggcttg--------cacctgtaatcccagcactttgggacgctgaggtgagagaattacttgaggccagcagtttgaagctgcagtgatctatgattgtgcctcta--------cctgggtgacagagtcagaccctgtctctt-a-a-
i cerAty1.NW_012001462v1    C 0 I 326
s chlSab2.chr26              53827083 284 +  58131712 GCAGAAATTTCACCTGACTGCCCACCCAAATTTCAG-TTTTCCTCTAAGCGTTAGCCACTATTATCCCTTAGGTGTGGATATTCAGACTTTCTTTTCCTTGCATGTGTAAATGTACATGTGT-AATGTACATATATAAAAATAATTTGTGACACCAggcttg--------cacctgtaatcccagcactttgggacgctgaggtgagagaattacttgaggccagcagtttgaagctgcagtgatctatgattgtgcctcta--------cctgggtgacagagtcagaccctgtctctt-a--a
i chlSab2.chr26             C 0 I 1
s manLeu1.NW_012102332v1       439391 281 -   3636681 gcagaaatttcacctgactgcccacccaaatttcag-ttttcctctaagagttagccactattatcccttcggtgtggatattcagactttcttttccttgcatg----gacgtacatgtgtaaatgtacatatataaaaataATTTGTGACACCAggcttg--------cacctgtaatcccagcactttgggacgctgaggtgagagaattacttgaggccagcagtttgaagctgcagtgatctatgattgtgcctcta--------cctgggtgacagagtcagaccctgtctctt-a--a
i manLeu1.NW_012102332v1    C 0 I 323
s colAng1.NW_012115278v1       421284 280 -   4457520 GCAGAAATGTCACCTGACTGCCCACCCAAATTTCAG-TTTTCCTCTAAGATTTAGCCACTATTATCCTTTCGGTGTGGATATTCAGACTTTCTTTTCCTTGCATG----GACATACATGTGTAAATGTACATATATAAAAATAATTTGTGACGCCAggcttg--------cacctgtaatcccagcactttgggatgctgaggtgagagaattacttgaggccagcagtttgaagctgcagtgatctatgattgtgcctcca--------cctgggtgacagggtcagaccctgtctcaa-g---
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             379506 1760 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=60654.000000
s hg38.chr15_KI270851v1_alt    169342 11 +    263054 aaaaaaaTTCG
s panTro5.chr15              73741979 11 -  83230942 aaaaaaaTTCG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74045008 11 -  99763055 aaaaaaaTTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        94413 11 -    281578 aaaaaaaTTCG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70952742 11 + 121039945 aaaaaaaTTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164257972 11 - 169600520 aaaaaaaTTCG
i rheMac8.chr7              I 99179 C 0
s macFas5.chr7              165578987 11 - 171882078 aaaaaaaTTCG
i macFas5.chr7              I 1 I 311
s macNem1.NW_012011934v1       340200 11 +   2379783 aaaaaaaTCTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       393385 11 +   4116138 aaaaaaaTTCG
i cerAty1.NW_012001462v1    I 326 C 0
s chlSab2.chr26              53827368 11 +  58131712 aaaaaaaTTCG
i chlSab2.chr26             I 1 C 0
s manLeu1.NW_012102332v1       439995 11 -   3636681 aaaaaaaTTCG
i manLeu1.NW_012102332v1    I 323 C 0
s colAng1.NW_012115278v1       421564 11 -   4457520 aaaaaaaTTCA
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             379506 1760 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=1867938.000000
s hg38.chr15_KI270851v1_alt    169353 344 +    263054 TATTtggggttagtagtagtacctacctcataggttattatgggatcagtacagtaggccagacaaagtgcgtatgctattattttgcatgtagtaagtacCAGCATATACTACCTGTTATCCAGAAATTTGCTGAAATGTGCCttgtattttctctctttcgattttgatcagtcttcctagaagtcatcagtttgag-ttttttcaaagaaccagttgttggttttattgattttgtttgttttctttttcattgatttctgctttactctttattatttccttttttctgctggctttgggttccatttgttcttctgtctcttctagtttcttaaggtaaa
s panTro5.chr15              73741990 340 -  83230942 TATTtggggttaatagtagtacctacctcgtaggttattataggatcagcacagtaggccagacaaagtgcgtatgctattatcttgcatgtagtaagtacCAGCATGTACTACCTGTTATCCAGAAATGTGCTGAAATGTGCCttgtattttctctctttccgtttggatcagtcttcccagaagttatcaatttgag-ttttttcaaagaaccagttgttggttttattgat----tttgttttctttttcattgatttctgctttactctttattatttccttttttctgctggctttgggttccatttgctcttctgtctttcctagtttcttaagataaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74045019 340 -  99763055 TATTtggggttaatagtagtacctacctcgtaggttattataggatcagcacagtaggccagacaaagtgcgtatgctattatcttgcatgtggtaagtacCAGCATGTACTACCTGTTATCCAGAAATGTGCTGAAATGTGCCttgtattttctctctttccgtttggatcagtcttcccagaagttatcaatttgag-ttttttcaaagaaccagttgttggttttattgat----tttgttttctttttcattgatttctgctttactctttattatttccttttttctgctggctttgggttccatttgctcttctgtctttcctagtttcttaagataaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        94424 340 -    281578 TATTT-gggttaatagtagtacctacctcgtaggttgttataggatcagtacagtaggccagacaaagtgcgtatgctattatcttgcatgtagtaagtacCAGCATGTACTACCTGTTATCCAGAAATGTGCTGAAATGTGCCttgtattttctctctttccgtttggatcagtcttcccagaagttatcagtttgagtttttttcaaagaaccagttgttggttttattgat----tttgttttctttttcattgatttctgctttactctttattatttccttttttctgctggctttgggttccatttgctcttctgtctttcctagtttcttaaggtaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70952753 337 + 121039945 TATTtggggttaatagtagtacctacctcgtagtttattatgggatcagtacagtaggccagacaaagtgtgtatgctattatcttgcatgtagtaagtacCAGCATATACTACCTGTTATCCAGAAGTTTGCTGAAATGTGCCTtgtgttt--tctctttctgttttgatcagtctt-ctagaagttatcagtttgag-ttttttcagagaacctgttgttggttttgttaat----tttgttttctttttcattgatttctgctttactctttattatttccttttttctgctggctttgggttccatttgctcttctgtctcttctagtttcttaaggtaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164257983 340 - 169600520 TATCTGCAGTtaataatagtacccactttgtaggttattatgggatcagtacagtaggccaggcaaagtgcgtatgctattatcttgcatgtagtaagtaccagcacata----ctgttatCCAGAAATTTGCTGAAATGTGCCttgtattttctctctttccattttgttcagtcttagtagaagttatcagtttgag-ttttttcaaagagccagttgttggttttagtgattttgtttgttttctttttcattgatttctgctttactctttattatttccttttttctgctggctttgggttccatttactcttctgtctcttctagtttcttaaggtaaa
i rheMac8.chr7              C 0 I 5
s macFas5.chr7              165579309 344 - 171882078 TATCTGCAGTtaataatagtacccactttgtaggttattatgggatcagtacagtaggccaggcaaagtgcgtatgctattatcttgcatgtagtaagtaccagcacatactgtctgttatCCAGAAATTTGCTGAAATGTGCCttgtattttctctctttccattttgttcagtcttagtagaagttatcagtttgag-ttttttcaaagagccagttgttggttttagtgattttgtttgttttctttttcattgatttctgctttactctttattatttccttttttctgctggctttgggttccatttactcttctgtctcttctagtttcttaaggtaaa
i macFas5.chr7              I 311 I 5
s macNem1.NW_012011934v1       340211 340 +   2379783 TGTCTGCGGTTgataatagtacccacctcgtaggttattatgggatcagtacagaaggccaggcaaagtgcgtatcctattatcttgcatgtagtaagtacCAGTGTAGACCACCTGTTATCCAGAAATTTGCTGAAATATGCCttgcactttctctctttccattttgatcagtcttactagaagttaccagtttgag-ttttttcaaagagccagttgttggttttattgat----tttgttttctttttcattgatttctgctttattatttattatttccatttttctgcttgctttaagttccatttgctcttctgtctcttctagtttcttaaggtaaa
i macNem1.NW_012011934v1    C 0 I 88013
s cerAty1.NW_012001462v1       393396 344 +   4116138 TATCTGCAGTtaataatagtacccactttgtaggttattatgggatcagtacagtaggccagacaaagtgcgtatgctattatcttgcatgtagtaagtaccagcacatactgtctgttatCCAGAAATTTGCTGAAATGTGCCttgtattttctctctttccattttgttcagtcttactagaagttatcagtttgag-ttttttcaaagagccagttgttggttttagtgattttgtttgttttctttttcattgatttctgctttactctttattatttccttttttctgctggctttgggttccatttactcttctgtctcttctagtttcttaaggtaaa
i cerAty1.NW_012001462v1    C 0 I 5
s chlSab2.chr26              53827379 344 +  58131712 TATCTGCAGTtaataatagtacccactttgtaggttattatgggaccagtacagtaggccaggcaaagtgcatatgctattatcttgcatgtagtaagtaccagcacatactgtctgttatCCAGAAATTTGCTGAAATGTGCCttgtattttctctttttccattttgttcagtcttactagaagttatcagtttgag-ttttttcaaagagccagttgttggttttagtgattttgtttgttttctttttcattgatttctgctttactctttattatttccttttttctgctggctttgggttccatttactcttctgtctcttctagtttcttaaggtaaa
i chlSab2.chr26             C 0 I 5
s manLeu1.NW_012102332v1       440006 344 -   3636681 TATCTGCAGTtaataatagtacccactttgtaggttattatgggatcagtacagtaggccagacaaagtgcgtatgctattatcttgcatgtagtaagtaccagcacatactgtctgttatCCAGAAATTTGCTGAAATGTGCCttgtattttctctctttccattttgttcagtcttactagaagttatcagtttgag-ttttttcaaagagccagttgttggttttagtgattttgtttggtttctttttcattgatttctgctttactctttattatttccttttttctgctggctttgggttccatttactcttctgtctcttctagtttcttaagttaaa
i manLeu1.NW_012102332v1    C 0 I 5
s colAng1.NW_012115278v1       421575 344 -   4457520 TATCTGCAGTtaataatagtacccactttgtagtttattatgggatcagtacagtaggccaggcaaagtgcgtatgctgttatcttgcatgtagtaagtaccagcacatactgcctgttatCTAGAAATTTGCTGAAATGTGCCttgtattttctctctctccattttgttcagtcttactagaagttatcagtttgag-ttttttcaaagagccagttgttggttttagtgattttgtttgtttcctttttcattgatttctgctttactctttattatttccttttttctgctggctttgggttccatttgctcatctgtctcttctagtttcttaaggtaaa
i colAng1.NW_012115278v1    C 0 I 5
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             379506 1760 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=1732346.000000
s hg38.chr15_KI270851v1_alt    169697 366 +    263054 ggcttagatcattgacttcagattttttgtcttttctaacaagtgttcaagactataatataaatttccctctaagcattgtttagccacatttcacaaatttggaaatgtttattcattttcatcttcattcagttgaaaatattttctaatttcccttttaatttcttcttttactcacttattatttggaaatgtgttatttcatttccaaatatttggggattttcaaatatctcctgttaacaatttctaaattagttgtagtcagagaacatattctgtgatttcaatgctgaggcttgtctgaagccccagaatatggtgcattctgtggaatgtttcatgcacatgtaataagaatgt
s panTro5.chr15              73742330 362 -  83230942 ggcttagatcattgactttagattttttgtcttttctaacaagtgttcaaaactataatataaatttccctctaagcattgtttagccacatttcacaaatttggaaatttttattcattttcatcttcattcagttgaaaatattttctaatttcccttttaatttcttcttttacctgcttattatttggaaat-tgttatttcatttcccagtatttggggattttcaaatatctcctgtt---aatttctaaattagttgtagtcagagaacatattctgtgatttcaatgttgaggcttgtctgaagccccagaatatggtgtattctgtggaatgtttcatgcacacataataagaatgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74045359 362 -  99763055 ggcttagatcattgactttagattttttgtcttttctaacaagtgttcaaaactataatataaatttccctctaagcattgtttagccacatttcacaaatttggaaatgtttattcattttcatcgtcattcagttgaaaatattttctaatttcccttttaatttcttcttttacccgcttattatttggaaat-tgttatttcatttcccagtatttggggattttcaaatatctcctgtt---aatttctaaattagttgtagtcagagaacatattctgtgatttcaatgttgaggcttgtctgaagccccagaatatggtgtattctgtggaatgtttcatgcacacataataagaatgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        94764 362 -    281578 ggcttagatcattgactttagattttttgtcttttctaacaagtattcaaaactataatataaatttccctctaagcattgtttagccacatttcacaaatttggaaatgtttattcattttcatcttcattcagttgaaaatattttctaatttcccttttaatttcttcttttacctgcttattatttggaaat-tgttatttcatttccaagtatttggggattttcaaatatctcctgtt---gatttctaaattagttgtagtcagagaacatattctgtgatttcaatgttgaggcttgtctgaagccccagaatatggtgtattctgtggaatgtttcatgcacacataataagaatgt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70953090 366 + 121039945 ggcttagatcatggactttagattttttgtcttttctaacaagtgttcaaaactataatatgaatttccctctaagcattgtttagccacatttcacaaatttggaaatgtttattcattttcatcttcattcaggtgaagatattttctaatttcccttttactttcttcttttacccacttattatttggaaatgtattatttcatttccaaatatttggggattttcaagtatttcctgttagcaatttctaaattagttgtagtcagagaacatattctgtgatttcaatgttgaggcttgtcttaagccccagaatatggtgtattctgtggaatgtttcgtgcacacgtaataagaatgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164258328 364 - 169600520 agcttagatcattgactttcgattttctgtcttttctaacaagtgttcaaaactataatataaatttccctctaagcattgtttagccacatttcacaaatttggaaatgtttattcattttcatcttcattcagttgaaaatattttctaatttcccttttaatttcttcttttacccacttattatttggaaatgtgttatttcattttgaaatatttggggattttcaaatatctcctgttaacaatttctaaattggttgtagtcagagaacatattctgtgatttcattgttgaggcttgtcttaagccccagaatatggtgtattctgtggaatgtttcatgcacacgtaataagaa--t
i rheMac8.chr7              I 5 C 0
s macFas5.chr7              165579658 364 - 171882078 agcttagatcattgactttcgattttctgtcttttctaacaagtgttcaaaactataatataaatttccctctaagcattgtttagccacatttcacaaatttggaaatgtttattcattttcatcttcattcagttgaaaatattttctaatttcccttttaatttcttcttttacccacttattatttggaaatgtgttatttcattttgaaatatttggggattttcaaatatctcctgttaacaatttctaaattggttgtagtcagagaacatattctgtgatttcattgttgaggcttgtcttaagccccagaatatggtgtattctgtggaatgtttcatgcacacgtaataagaa--t
i macFas5.chr7              I 5 C 0
s cerAty1.NW_012001462v1       393745 364 +   4116138 agcttagatcattgactttcgattttctgtcttttctaacaagtgttcaaaactagaatataaatttccctctaagcattgtttagccacatttcacaaatttggaaatgtttattcattttcatcttcattcagttgaaaatattttctaatttcccttttaatttcttcttttacccacttattatttggaaatgtgttatttcattttcaaatatttggggattttcaaatatctcctgttaacaatttctaaattggttgtagtcagagaacatattctgtgatttcattgttgaggcttgtcttaagccccagaatatggtgtattctgtggaatgtttcatgcacacgtagtaagaa--t
i cerAty1.NW_012001462v1    I 5 C 0
s chlSab2.chr26              53827728 364 +  58131712 agcttagatcattgactttcgattttctgtcttttctaacaagtgttcaaaactataatataaatttccctctaagcattgtttagccacatttcacaaatttggaaatgtttattcattttcatcttcattcagttgaaaatattttctaatttcccttttaatttcttcttttacccacttattatttggaaatgtgttatttcatttccaaatatttggggattttcaaatatctcctgttaacaatttctaaattggttgcagtcagagaacatattctgtgatttcattgttgaggcttgtcttaagccccagaatatggtgtattctgtggaatgtttcatgcacacgtaataagaa--t
i chlSab2.chr26             I 5 C 0
s manLeu1.NW_012102332v1       440355 364 -   3636681 agcttagatcattgactttcgattttctgtcttttctaacaagtgttcaaaactataatataaatttccctctaagcattgtttagccacatttcacaaatttggaaatgtttattcattttcatcttcattcagttgaaaatattttctaatttcccttttaatttcttcttttacccacttattatttggaaatgtgttatttcattttcaaatatttggggattttcaaatatctcctgttaacaatttctaaactggttgtagtcagagaacatattctgtgatttcattgttgaggcttgtcttaagccccagaatatggtgtattctgtggaatgtttcatgcacacgtaataagaa--t
i manLeu1.NW_012102332v1    I 5 C 0
s colAng1.NW_012115278v1       421924 364 -   4457520 atcttagataattgactttacattttctgtcttttccaacaagtgttcaaaactataatataaatttccctctaagcattgtttagccacatttcacaaatttggaaatgtttattcattttcatcttcattcagttgaaaatattttctaacttcccttttaatttcttcttttacccacttactatttggaaatatgttatttcatttccaaatatttggggattttcaaatatctcctgttaacaatttctaaattagttgtagtcagagaacatattctgtgatttcaatgttgaggcttgtcttaagccccagaatatggtgtattctgtggaatgtttcatgcacacgtaataagaa--t
i colAng1.NW_012115278v1    I 5 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             379506 1760 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e macNem1.NW_012011934v1       340551 88013 +   2379783 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=968892.000000
s hg38.chr15_KI270851v1_alt    170063 231 +    263054 ggctgggtgcagtggctcctgcctgtaatctcaacactttgggaggctgaagtgggtggattacttgaggtcaggagttcgagaccagcctggccaacata-gtgaaaccctgtctctacgaaacat-acaaaaattagctgggtgtggtggtgggtgcctgtaatc------------------------------tcgattgcaccc------------------------ctg---------cactttagtctgggtgacaaagcaagactacatctc--aaaaaaaaa----aaaaaa
s panTro5.chr15              73742692 227 -  83230942 ggctgggtgtggtggctcatgcctgtaatcccaacactttgggaggctgaggtgggtggattacttgaggtcaggagttcgagaccagcctggccaacatg-gtgaaaccctgtctctatgaaacat-acaaaaattagctgggtgtggtggtgggtgcctgtaatc------------------------------ttgattgcaccc------------------------ctg---------cactttagtctgggtgacaaagcgagactacatctc------aaaaa----aaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74045721 225 -  99763055 ggctgggtgtggtggctcatgcctgtaatcccaacactttgggaggctgaggtgggtggattacttgaggtcaggagttcgagaccagcctggccaacatg-gtgaaaccctgtctctatgaaacat-acaaaaattagctgggtgtggtggtgggtgcctgtaatc------------------------------ttgattgcaccc------------------------ctg---------cactttagtctgggtgacaaagcgagactacatctc--------aaa----aaaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        95126 227 -    281578 ggctgggtgtggtggctcatgcctataatcccaacactttgggagtctgaggtgggtggattacttgaggtcaggagttcgagaccagcctggcccacatg-gtgaaaccctgtctctatgaaacat-acaaaaattagctgggtgtggtggtgggtgcctgtaatc------------------------------ttgattgcaccc------------------------ctg---------cactttagtctgggtgacaaagcaagactacatctc------aaaaa----aaaaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70953456 229 + 121039945 ggctgggtgcggtggcccatgcttgtaatctcaacactttgggaggcttaggtgggtagattacttgaggtcaggagttcgagaccagcctagccaacatg-atgaaaccttgtctctacgaaacat-acaaaaattagctgggtgtggtggtgggtgcctgtaatc------------------------------TTgattgcaccc------------------------ctg---------ctctttagtctgggtgacaaagcgagactacatctc----aaaaaaa----aaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164258692 226 - 169600520 ggctgggtgctgtggctcatgcctgtaatcccagcactttgggaggctgaggtgggtggattacttgaggtcaggagttcaagaccagcctggccaacatg-gtgaaacc--gtctctaccaaacataacaaaaattagctgggtgtggtggtgggcacttgtaatc------------------------------tcgattgcaccc------------------------ctg---------cactttattctgggtgacaaagtgagactacatctc------aaaaa----aaaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165580022 226 - 171882078 ggctgggtgctgtggctcatgcctgtaatcccagcactttgggaggctgaggtgggtggattacttgaggtcaggagttcaagaccagcctggccaacatg-gtgaaacc--gtctctaccaaacataacaaaaattagctgggtgtggtggtgggcacttgtaatc------------------------------tcgattgcaccc------------------------ctg---------cactttattctgggtgacaaagtgagactacatctc------aaaaa----aaaaaa
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       394109 139 +   4116138 ggctgggtgctgtggctcatgcctgtaatcccagcactttgggaggctgaggtgggtggattacttgaggtcaggagttcaagaccagcctggccaacatg-gtgaaacc--gtctctaccaaacataaca------------------------------------------------------------------------------------------------------------------------------------------------------------aaaaA----AAAAAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53828092 228 +  58131712 ggctgggtgctgtggctcatgcctgtaatcccagcactttgggaggctgaggtgggtggattacttgaggtcaggagttcaagaccagcctggccaacatg-gtgaaacc--atctctaccaaacataaaaaaaattagctgggtatggtggtgggcacttgtaatc------------------------------tcgattgcaccc------------------------ctg---------cactttattctgggtgacaaagtgagactacatttc------aaaaaa--gaaaaaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       440719 227 -   3636681 ggctgggtgctgtggctcatgcctgtaatcccagcactttgggaggctgaggtgggtggattactttaggtcaggagttcaagagcagcctggccaacatg-gtgaaacc--gtctctaccaaacataacaaaaattagctgggtgtggtggtgggcacttgtaatc------------------------------tcgattgcaccc------------------------ctg---------cactttagtctgggtgacaaagtgagactacatctc------aaaaaa---aaaaaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       422288 229 -   4457520 ggctgggtgctgtggctcatgcctgtaat-ccagcactttgggaggctgaggtgggtggattacttgaggtcaggagttcaagaccagcctggccaacatg-gtgaaacc--gtctctaccaaacataacaacaattagctgggtgtggtggtgggcgcttgtaatc------------------------------tcgattgcgccc------------------------ctg---------cactttagtctgggtgacaaagtgagactacatctc------aaaaaaaaaaaaaaa
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             381266 281 +   3845361 ggtcaggtgctggggcttacttctgtagtcctagcactctgggaggctgaggctagtggattgctggagctcactggttcgagaccagcc---ccaacaagagtgagaccccacctcta-------------aaaatagccaggtgttgtggcaggtgcctgtaatcccagccatttgggaggctgtgacaagagaattgcttgggcccaagggtttgaggttgttgtgagctctgacgccatgacactccaccgagggtgacaaa-tgagaccctgtcttccaaaaaaaaa----aaaaaa
i otoGar3.GL873689          I 1760 I 175
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e macNem1.NW_012011934v1       340551 88013 +   2379783 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=1527961.000000
s hg38.chr15_KI270851v1_alt    170294 318 +    263054 gtgtattttgctgctctgtaaagcttagtgagatca----agttgatagtg---ttcaggtatccttgacttgaaatagttttctgcctgcttgttctagtcactgttaggagaggagttgaactaacacacaaggttggcttaccacattagtttgacatgaatctcagagatgttacccgtagctgattacttagtaactttaaagatacaagtaatatcctcacttgtgtgctcaggcaaagtggggagagatgtgggagagtctgtgcaacccccgcaggtccatcctctttgagcccggcctgcgagatg-agacctctca
s panTro5.chr15              73742919 318 -  83230942 gtgtgttttgctgctctgtaaagcttaatgagatca----agttgatagtg---ttcaggtatccttgacttgaaataattttctgcctacttgttctattcactgttaggagaggagttgaactaacacacaaggttggcttactacattagtttgacatgaatctcagagatcttacccgtacctgattatttagtaactttaaagatacaagttatatcctcacttgtgtgctcaggcaaagtggggagagatgtgggagagtctgtgcaactcctgtaggtccgtcctCTTTGAACCCCGCCTGAGAGATG-AGACCTCTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74045946 318 -  99763055 gtgtgttttgctgctctgtaaagcttaatgagatca----agttgatagtg---ttcaggtatccttgacttgaaataattttctgcctacttgttctattcactgttaggagaggagttgaactaacacacaaggttggcttactacattagtttgacatgaatctcagagatcttacccatacctgattatttagtaactttaaagatacaagttatatcctcacttgtgtgctcaggcaaagtggggagagatgtgggagagtctgtgcaactcctgcaggtccgtcctCTTTGAACCCCGCCTGAGAGATG-AGACCTCTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        95353 318 -    281578 gtgtgttttgctgctctgtaaagcttaatgagatca----agttgatagtg---ttcaggtatccttgccttgaaacaattttctgtctacttgttctattcactgttaggagaggagttgaactaacacacaaggttggcttactacattagtttgacatgaatctcagagatcttacccgtacctgattatttagtaactttaaagatacaagttatatcctcacttgtgtgctcaggcaaagtggggagagatgtgggagagtctgtgcaactcctgcaggtccgtcctctttgaaccctgcctgagagatg-agacctctca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70953685 313 + 121039945 GTGTATTTTGCTGCTCTGTAAAGCTTAATGAGATCA----AGTTGATAGTG---TTCAGGCATCCTTGACTTGAAATAATTTTCTGCCTACTTGTTCTATTCACTATTAGGAGAGGAGTtgaactaacacacaaggttggcttaccacattagtttgacatgaatctccgagatcttacccgtacctgattacttagtaactttaaagatacaagtagtatcctcacttgtgtgctcaggcaaagtggggagagatgtgggagagtctgtggaactcctgcaggtccgtcctccttgAGCC------AAGGCGTGTAGTCATCTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164258918 318 - 169600520 aagtattttgctgctctgtaacgcttagtgagatca----agttgtcagtg---ttcaggtatccttgacttgaaataattttctgcctacttgttctattcactgttaggagaggagttgaactaacacgcaaggttggattaccacgttagtttgatgtgaatctcagagattttatcagtaccagattacttaggaactttaaagatacaagtaatatcctcacttgtgtgctcaggcaaagcaggaagagatatgggacagtctgtgcaactcccccaggttcgtcctGTTTGAACTCCGCCTGAGAGATG-AGACCTCTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165580248 318 - 171882078 aaGTATTTTGCTGCTCTGTAACGCTTAGTGAGATCA----AGTTGTCAGTG---TTCAGGTATCCTTGACTTGAAAtaattttctgcctacttgttctattcactgttaggagaggagttgaactaacacgcaaggttggattaccacattagtttgatgtgaatctcagagattttatcagtaccagattacttaagaactttaaagatacaagtaatatcctcacttgtgtgctcaggtaaagcaggaagagatatgggacagtctgtgcaactcccccaggttcgtcctGTTTGAACTCCGCCTGAGAGATG-AGACCTCTCA
i macFas5.chr7              C 0 I 1425
s cerAty1.NW_012001462v1       394248 318 +   4116138 GTGTATTTTGCTGCTCTGTAACGCTTAGTGAGATCA----AGTTGTCAGTG---TTCAGGTATCCTTGACTTGAAAtaattttctgcctacttgttctattcactgttaggagaggagttgaactaacacgcaaggttggattaccacattagtttgacgtgaatctcagagattttatcggtaccagattacttaggaactttaaagatacaagtaatatcctcacttgtgtgctcaggcaaagcaggaagagatatgggacagtctgtgcaactcccccaggtccgtcctGTTTGAACTCCGCCTGAGAGATG-AGACCTCTCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53828320 317 +  58131712 GTGTATTTTGCTGCTCTGTAACGCTTAGTGAGATCA----AGTTGTCAGTG---TTCAGGTATCCTTGACTTGAAAtaattttctgcctacttgttctattcactgttaggagaggagttgaactaacacgcaaggttggattaccacattggtttgacgtgaatctcagatattttatcagtaccagattacttaggaactttaaagatacaagtaatatcctcacttgtgtgctcaggcaaagcaggaagagatat-ggacagtctgtgcaactcccccaggtccgtcctGTTTGAACTCCGCCTGAGAGATG-AGACCTCTCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       440946 318 -   3636681 GTGTATTTTGCTGCTCTGTAATGCTTAGTGAGATCA----AGTTGTCAGTG---TTCAGGTATCCTTGACTTGAAAtaattttctgcctacttgttctattcactgttaggagaggagttgaactaacacgcaaggttggattaccacattagtttgacgtgaatctcagagattttatcggtaccagattacttaggaactttaaagatacaagtaatatcctcacttgtgtgctcaggcaaagcaggaagagatatgggacagtctgtgcaactcccccaggtccgtcctGTTTGAACTCCGCCTGAGAGATG-AGACCTCTCA
i manLeu1.NW_012102332v1    C 0 I 665
s colAng1.NW_012115278v1       422517 310 -   4457520 GTGTATTTTGCTGCTCTGTAAAGCTTAGTGAGATCA----GGTTGTCATTG---TTCAGGTATGCTTGACTTGAAATAATTTTCTGCCTACTTGTTCTAGTCACTGTTAGGAGAGGAGTtgaactaacacacacggttggattaccacattagtttgacatgaatctcacaga--------gtaccagattacttaggaactttaaagatacaagtaatatcctcacttgtgtgctcaggcaaagcaggaagagatatgggacagtctgtgcaactcccccaggtccgtcctGTTTGAACTCTGCCTGAGAGATG-AGACCTCTCA
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             381722 268 +   3845361 gtatattttgcagctctgtgaaactta--gagatcaagttagttgacagtgtttttcagacattcttggtttgaaataattttgtgcccactttt----attactatggggagaggagtTGTACtaacacctgagattggattatcacatcatagagacatg--tgtcagagatcttacctggat----------------------------agccatatcctcacttgtatgcacaggcaaagcccg--gagataggagacggtcagagcagctccc-taggtctgtcttctttgtgctcaggct-------------------
i otoGar3.GL873689          I 175 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e macNem1.NW_012011934v1       340551 88013 +   2379783 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=21010.000000
s hg38.chr15_KI270851v1_alt    170612 4 +    263054 ctga
s panTro5.chr15              73743237 4 -  83230942 CTGA
i panTro5.chr15             C 0 I 122
s panPan2.chr15              74046264 4 -  99763055 CTGA
i panPan2.chr15             C 0 I 122
s gorGor5.CYUI01000141v1        95671 4 -    281578 ctga
i gorGor5.CYUI01000141v1    C 0 I 80
s nomLeu3.chr6               70953998 4 + 121039945 CTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164259236 4 - 169600520 CTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165581991 4 - 171882078 CTGA
i macFas5.chr7              I 1425 C 0
s cerAty1.NW_012001462v1       394566 4 +   4116138 CTGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53828637 4 +  58131712 CTGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       441929 4 -   3636681 CTGA
i manLeu1.NW_012102332v1    I 665 C 0
s colAng1.NW_012115278v1       422827 4 -   4457520 CTGA
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             381990 0 +   3845361 C
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e macNem1.NW_012011934v1       340551 88013 +   2379783 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=11000.000000
s hg38.chr15_KI270851v1_alt    170616 2 +    263054 gg
s panTro5.chr15              73743363 2 -  83230942 GG
i panTro5.chr15             I 122 C 0
s panPan2.chr15              74046390 2 -  99763055 GG
i panPan2.chr15             I 122 C 0
s gorGor5.CYUI01000141v1        95755 2 -    281578 GG
i gorGor5.CYUI01000141v1    I 80 C 0
s nomLeu3.chr6               70954002 2 + 121039945 GG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164259240 2 - 169600520 GG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165581995 2 - 171882078 GG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       394570 2 +   4116138 GG
i cerAty1.NW_012001462v1    C 0 I 383
s chlSab2.chr26              53828641 2 +  58131712 GG
i chlSab2.chr26             C 0 I 760
s manLeu1.NW_012102332v1       441933 2 -   3636681 GG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       422831 2 -   4457520 GG
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             381990 0 +   3845361 C
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e macNem1.NW_012011934v1       340551 88013 +   2379783 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=11185.000000
s hg38.chr15_KI270851v1_alt    170618 7 +    263054 cgtgtgg
s panTro5.chr15              73743365 7 -  83230942 CGTGTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74046392 7 -  99763055 CGTGTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        95757 7 -    281578 CGTGTCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70954004 7 + 121039945 TGTGTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164259242 7 - 169600520 TGCGTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165581997 7 - 171882078 TGCGTCC
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012102332v1       441935 7 -   3636681 TGCGTCG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       422833 7 -   4457520 CGCGTCC
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             381990 0 +   3845361 C
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e cerAty1.NW_012001462v1       394572 383 +   4116138 I
e macNem1.NW_012011934v1       340551 88013 +   2379783 I
e chlSab2.chr26              53828643 760 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=13095.000000
s hg38.chr15_KI270851v1_alt    170625 3 +    263054 tcc
s panTro5.chr15              73743372 3 -  83230942 TCc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74046399 3 -  99763055 TCc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        95764 3 -    281578 TCc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70954011 3 + 121039945 TCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164259249 3 - 169600520 TCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165582004 3 - 171882078 TCc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       428564 3 +   2379783 TCC
i macNem1.NW_012011934v1    I 88013 C 0
s manLeu1.NW_012102332v1       441942 3 -   3636681 TCc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       422840 3 -   4457520 TCC
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             381990 0 +   3845361 C
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e cerAty1.NW_012001462v1       394572 383 +   4116138 I
e chlSab2.chr26              53828643 760 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=26291.000000
s hg38.chr15_KI270851v1_alt    170628 5 +    263054 tctca
s panTro5.chr15              73743375 5 -  83230942 tctca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74046402 5 -  99763055 tctca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        95767 5 -    281578 tctca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70954014 5 + 121039945 TCTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164259252 5 - 169600520 TCTCA
i rheMac8.chr7              C 0 I 1882
s macFas5.chr7              165582007 5 - 171882078 tctca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       428567 5 +   2379783 TCTCG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       394955 5 +   4116138 tctca
i cerAty1.NW_012001462v1    I 383 C 0
s manLeu1.NW_012102332v1       441945 5 -   3636681 tctca
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       422843 5 -   4457520 TCTCA
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             381990 5 +   3845361 tcttc
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e chlSab2.chr26              53828643 760 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=62701.000000
s hg38.chr15_KI270851v1_alt    170633 13 +    263054 ctgaggtgtgtcg
s panTro5.chr15              73743380 13 -  83230942 ctgaggtgtgtcg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74046407 13 -  99763055 ctgaggtgtgtcg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        95772 13 -    281578 ctgaggtgtgtcg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70954019 13 + 121039945 CTGAGGTGTGTCG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164261139 13 - 169600520 CTGAGGTGCGTCC
i rheMac8.chr7              I 1882 C 0
s macFas5.chr7              165582012 13 - 171882078 ctgaggtgcgtcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       428572 13 +   2379783 CTGAGGTGCGTCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       394960 13 +   4116138 ctgaggtgtgtcc
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       441950 13 -   3636681 ctgaggtgtgtcc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       422848 13 -   4457520 CTGAGGTGCGTCG
i colAng1.NW_012115278v1    C 0 I 587
s otoGar3.GL873689             381995 13 +   3845361 aagaggtgtgcag
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e chlSab2.chr26              53828643 760 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=42496.000000
s hg38.chr15_KI270851v1_alt    170646 9 +    263054 tcatctcac
s panTro5.chr15              73743393 9 -  83230942 tcctctcac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74046420 9 -  99763055 tcctctcac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        95785 9 -    281578 tcctctcac
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70954032 9 + 121039945 TCCTCTCAC
i nomLeu3.chr6              C 0 I 807
s rheMac8.chr7              164261152 9 - 169600520 TCTTCTCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165582025 9 - 171882078 tcttctcac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       428585 9 +   2379783 TCTTCTCGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       394973 9 +   4116138 tcatctcac
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       441963 9 -   3636681 tcatctcac
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       423448 9 -   4457520 tcatctcac
i colAng1.NW_012115278v1    I 587 C 0
s otoGar3.GL873689             382008 9 +   3845361 tcaccttgc
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e chlSab2.chr26              53828643 760 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=574049.000000
s hg38.chr15_KI270851v1_alt    170655 133 +    263054 tgcaca---aggagcattaaggatgtgcagtgttcccgttttgtagtcag----------atagtttatacaccttagggaaccttttccagggagccatgtcccataagtccatggattttaggtatgtttaccaaacacaatcc
s panTro5.chr15              73743402 133 -  83230942 tgcaca---aggagcattaaggatgtgcagtgtttcccttttgtagtcag----------atagtttatacaccttagggaacgttttccagggagccatgtcccgtaagtccatggattttaggtatgtttaccaaacacaatcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74046429 133 -  99763055 tgcaca---aggagcattaaggatgtgcagtgtttcccttttgtagtcag----------atagtttatacaccttagggaacgttttccagggagccatgtcccgtaagtccatggattttaggtatgtttaccaaacacaatcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        95794 133 -    281578 tgcaca---aggagcgttaaggatgtgcagtgtttcccttttgaagtcag----------atagtttatacaccttagggaacgttttccagggagccatgtcccgtaagtccatggattttaggtatgtttaccaaacacaatcc
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164261161 133 - 169600520 TGCAca---agtagcattaaggatgcgtagtgtttccgttttgtagtcaa----------atagtttatacactttagggaactttttccagggaaccatgtcccataagtccatggattttaggtatgtttaccaaacacaatcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165582034 133 - 171882078 tgcaca---agtagcattaaggatgcgtagtgtttccgttttgtagtcaa----------atagtttatacactttagggaactttttccagggaaccatgtcccataagtccatggattttaggtatgtttaccaaacacaatcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       428594 133 +   2379783 TGCACA---AGTAGCATTAAGGATGCGTAGTGtttccgttttgtagtcaa----------atagtttatacactttagggaactttttccagggaaccgtgtcccataagtccatggattttaggtatgtttaccaaacacaatcc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       394982 133 +   4116138 tgcaca---agtagcattaaggatgcgtagtgtttccgttttgtagtcaa----------atagtttatacactttagggaaccttttccagggaaccgtgtcccataagtccatggattttaggtatgtttaccaaacacaatcc
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       441972 133 -   3636681 tgcaca---agtagcattaaggatgcgtagtgtttccgttttgtagtcaa----------atagtttatacactttagggaatgttttccagggaaccatgtcccataagtccttggattttaggtatgtttaccaaacacaatcc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       423457 133 -   4457520 tgcaca---agtagtgttaaggatgcgtagtgtttccgttttgtaatcaa----------atagtttatacactttagggaaccttttccagggaaccatgtcccgtaagtccatggattttaggtatgtttaccaaacacaatcc
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             382017 143 +   3845361 ---atagtgaggagcatttagggtatatggtgtctccattttataaactgtataattaccttagtatatagaccttatagaaccttttccagggagccatctcccacagacatatgggttttaggtatatttacccaaagcaatct
i otoGar3.GL873689          C 0 I 224
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e nomLeu3.chr6               70954041 807 + 121039945 I
e chlSab2.chr26              53828643 760 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=1972754.000000
s hg38.chr15_KI270851v1_alt    170788 496 +    263054 taaactaaccac-----------------------------------------------atcttgctaaaaacatttcatagataaggacacttctcctagcaaataccagtcatttatttacagagaagccagtctcagtgttgtggg-agatcagccccagtgactgg---ctttatttcccaggagtatctccATTGTGCTGGGGAGGCATGAAGAGCAATTTCACTGCTTAGTTCCTCTTTCTTCTgaggagaattgaaatctctcatgctaattatggattattttctttcagctctgcaggttttgcttcatgtatttgagaa---tgttataaggtgcatgcacttttaggatttttacgccatattcataaatttgacccccttaatctccggtgacattctttgttgtgaagtcaccttggtctgactac-tctcctttcttctgatttggtgtttgcgtggtgtgtttgccaggtttagcttttttcactttcaaactttgtgtatgtgtaaagtagatttctttcaggtatcatttaatt
s panTro5.chr15              73743535 500 -  83230942 taaactaaccac-----------------------------------------------atcttgctaaaaacatttcatagataaggacacttctcttagcgaataccagtcatttatttatagagaagccagtctcagcgttctggggagatcagccccagcgactgg---ctttatttcccaggagtatctccatcgtgctggggaggcatgaagagcaatttcactgcttagttcctctttcttctcaggagaattgaaatctctcatgctaattatggattattttctctcagctctgcaggttttgcttcatgtatttgagaactatgttataaggtgcatgcacttttaggatttttacatcatatttgtaaatttgaccccctttatctccagtgacattctttgttgtgaagtcaccttggtctgactac-tctcctttcttctgatttggtgtttgcgtggtgtgtttgccaagtttagcttttttcactttcaacctttgtgtatgtgtaaagtgcatttctttcaggtatcatataatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74046562 487 -  99763055 taaactaaccac-----------------------------------------------atcttgctaaaaacatttcatagataaggacacttctcttagcgaataccagtcatttatttatagagaagccagtctcagcgttctggggagatcagccccagcgactgg---ctttatttcccaggagtatctccatcatgctggggaggcatgaagagcaatttcactgcttagttcctctttcttctcaggagaattgaaatctctcatgctaattatggattattttctctcagctctgcaggttttgcttcatgtatttgagaactatgttataaggtgcatgcacttttaggatttttacatcatatttgtaaatttgaccccctttatctccagtgacattctttgttgtgaagtcaccttggtctgactac-tctcctttcttctgatttg-------------gtgtttgccaagtttagcttttttcactttcaacctttgtgtatgtgtaaagtgcatttctttcaggtatcatataatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        95927 500 -    281578 taaactaaccac-----------------------------------------------atcttgctaaaaacatttcatagataaggacacttcgcttagcgaataccagtcatttatttatagagaagccagtctcagcgttctggggagatcagccccagcgactgg---ctttatttcccaggagtatctccatcgtgctggggaggcatgaagagcaatttcactgcttagttcctctttcttctcaggagaattgaaatctctcatgctaattatggattattttctctcagctctgcaggttttgcttcatgtatttgagaactatgttataaggtgcatgcacttttaggatttttacatcgtatttgtaaatttgaccccctttatctctggtgacattctttgttgtgaagtcaccttggtctgactac-tctcctttcttctgatttggtgtttgcgtggtgtgtttgccaagtttagcttttttcactttcaacctttgtgtatgtgtaaagtggatttctttcaggtatcatataatt
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164261294 496 - 169600520 taaactaaccac-----------------------------------------------atcttgctaaaaacatttcatagataaggactctt---ctagcaaataccagtcatttatttacagagaagccggtctcagcattctggggagatcaggcccagcgactgg--cctttgtttccctggggtatctccattgtgctggggaggcatgaaaagcaatttcactgcttagttcatctttcttcTgaggagaattgaaa--tctcatgccagttacagattattttctttcagctctgcagtttttgcttcatgtatttgagaactgtgttatacgatgcacgcacttttaggatttttacatcattttcgtaaatttgaccccctttatctctggtgacgttctttgttgtgaagtcaccttggtttgactac-tatcctttcttctgatttggtatttgtgtggtgtgtttgccaggtttagcttttttcactttcaacctttgtgtatgtgtgaagtggatttctttcaggtatcatataatt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165582167 496 - 171882078 taaactaaccac-----------------------------------------------atcttgctaaaaacatttcatagataaggactctt---ctagcaaataccagtcatttatttacagagaagccggtctcagcattctggggagatcaggcccagcgactgg--cctttgtttccctggggtatctccattgtgctggggaggcatgaaaagcaatttcactgcttagttcatctttcttcTgaggagaattgaaa--tctcatgccaattacagattattttctttcagctctgcagtttttgcttcatgtatttgagaactgtgttatacgatgcacgcacttttaggatttttacatcattttcgtaaatttgaccccctttatctctggtgatgttctttgttgtgaagtcaccttggtttgactac-tatcctttcttctgatttggtatttgtgtggtgtgtttgccaggtttagcttttttcactttcaacctttgtgtgtgtgtgaagtggatttctttcaggtatcatataatt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       428727 495 +   2379783 taaactaaccac-----------------------------------------------atcttgctaaaaacatttcatagataaggactctt---ctagcaaataccagtcatttatttacagagaagccggtctcagcattctggggagatcaggcccggcgactgg--cctttgtttccctggggtatctccattgtgctggggaggcatgaaaagcagtttcactgcttagttcatctttcttcTgaggagaatggaaa--tctcatgccgattacagattcttttctttcagctctgcagtttttgcttcatgtatttgagaactgtgttatacgatgcacgcacttttaggatttttacatcattttcgtaaatttgaccccctttatctctggtgacgttctttgttgtgaagtcaccttggtttgactac-tgtcctttcttctgatttggtatttgtgtggtgtgtttgccaggtttagcttttttcactttcaacctttgtgtatgtgtgaagtggatttctttca-gtatcatataatt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       395115 499 +   4116138 taaactaaccac-----------------------------------------------atcttgctaaaaacatttcatagataaggactcttctcctagcaaataccagtcatttatttacagagaagccggtctcagcattctggggagatcaggcccagcgactgg--cctttgtttccctggagtagctccGTTGTGCTGGGGAGGCATGAAAAGCAATTTCACTGCTTAGTTCATCTTTCTTCTgaggagaattgaaa--tctcatgctaattacagatgattttctttcagctctgcggtttttgtttcatgtatttgagaactgtgttatacgatgcacgcacttttaggatttttacatcattttcgtaaatttgaccccctttatctctggtgacgttctttgttgtgaagtcaccttggtttgactac-tatcctttcttctgatttggtatttgtgtggtgtgtttgccaggtttagcttttttcactttcaacctttgtgtatgtgtgaagtggatttctttcaggtatcatataatt
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       442105 499 -   3636681 taaactaaccac-----------------------------------------------atcttgctaaaaacatttcataggtaaggattcttctcctagcaaataccagtcatttatttacagagaagccggtctcagcattctggggagatcaggcccagcgactgg--cctttgtttccctggagtagctccGTTGTGCTGGGGAGGCATGAAAAGCAATTTCACTGCTTAGTTCATCTTTCTTCTgaggagaattgaaa--tctcatgctaattacagattattttctttcagctctgcggtttttgtttcatgtatttgagaactgtgttatacgatgcacgcacttttaggatttttacatcattttcgtaaatttgaccccctttatctctggtgacgttctttgttgtgaagtcaccttggtttgactac-tatcctttcttctgatttggtatttgtgtggtgcgtttgccaggtttagcttttttcactttcaacctttgtgtatgtgtgaagtggatttctttcaggtatcatataatt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       423590 499 -   4457520 taaactaaccac-----------------------------------------------atcttgctaaaaacatttcatagataaggactcttctcctagcaaataccagtcatttatttacagagaagccagtctcagcattctggggagatcagccccagcgactgg--cctttgtttccctggagtatctccattgtgctggggaggcatgaaaagcaatttcactgcttagttcatctttcttcTgaggagaattgaaa--tctcatgctaattacagattattttttttcagctctgcagtttttgcttcatgtatttgagaactgtgttatacgatgcacacacttttaggatttttatgtcattttcgtaaatttgaccccctttatctccggtgacgttctttgttgtgaagtcaccttggtttgactac-tatcctttcttctgatttggtgtttgtgtgatgtgtttgccaggtttagcttttttcactttcaacctttgtgtatgtgtgaagtggatttctttcaggtatcatatgatt
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             382384 508 +   3845361 tgaacccaccaccctcagtatttggggctggcgccctactcactgagccacaggtgctgcccttgc-aaaaatatttcatagataatgattcctctcctaacaaaggccagtagtttatttactaagaagactgtcttggcgttccagagggatcagatccagtcgctagtcccctttcttcccT---GTGTCTTTGCTGCGATGTTGAGAAGTGCTGAGCTGTCTGGCAACCAGGACCTCCTTCCT----GGGAGTATTGAACTCTCTTGTGTTAACAATGTA----TTTTTTTGAGTTTT-----TTTTGCTTCTTATATTTTAAATCTGTTTTGAAGATTG--TTCACTGTTATGATTCTTATGTC----------ATTTGACCCCTTT--CTTCTGCTGATA--CTTCATTCTGAATTGAGGCTGGTTTGACTGCTTGACGCACCTtttcatttggtgtttgcatg----gtttatactgttcacattttt--ggtttcaacctgtgtctgtctgtaaagtgggtttcatgtagacatcagtt----
i otoGar3.GL873689          I 224 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e nomLeu3.chr6               70954041 807 + 121039945 I
e chlSab2.chr26              53828643 760 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=1085890.000000
s hg38.chr15_KI270851v1_alt    171284 224 +    263054 aggtcttgcttc-tttattcaccctgacaacctctgttttttatttggaatctttagactacttgggtttaaATCTATCATCTCTGGCGTTTTCAGT-TACATCTTT-CACTTGTCACTGCCCACTCTCAAATGGTATTACACTGCCTGAGCCGCGGGGCAGTGCTCTGACTGTAGCTTCCTGCTTCTGACATGTTCT------TGGTTGGTAGTGTTGCTGTGTC--ATGTCCA
s panTro5.chr15              73744035 224 -  83230942 aggtcttgcttc-tttattcaccctggcaacctctgttttttatttggaatctttagactacttgggtttaaATCTATCGTctctggcgttttcagt-tacatcttt-cacttgtcactgtccactctcaaatggtattacactgcctgagccgcggggcagtgctctgaccgtagcttcctccttctgacatgttct------tggttggtagtgttgctgtgtc--atgtcca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74047049 223 -  99763055 aggtcttgcttc-tttattcaccctggcaacctctg-tttttatttggaatctttagactacttgggtttaaATCTATCATctctggcgttttcagt-tacatcttt-cacttgtcactgtccactctcaaatggtattacactgcctgagccgcggggcagtgctctgaccgtagcttcctgcttctgacatgttct------tggttggtagtgttgctgtgtc--atgtcca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        96427 224 -    281578 aggtcttgcttc-tttattcaccctgacaacctctgttttttatttggaatctttagactacttgggtttaaaTCTATCATctctggtgttttcagt-tacatcttt-cacttgtcaccgtccactctcaaatggtattacactgcctgagccgtggggcagtgctctgaccgtagcttcctgcttctgacatgttct------tggttggtagtgttgctgtgtc--atgtcca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70954848 222 + 121039945 aggttttgcttcatgtatt-----tgagaacctctgttttttgTTCGGAATCTTTAGACTACTTGGGTTTAAATCTATCATctctggcgttttcagt-tacatcttt-cacttgtcactgtccactctcaaatggtattacactgcctgagctgcggggcagtgctctgaccgtagtttcccgcttctgacatgttct------tggttggtagtgttgctgtgtcatatgtcca
i nomLeu3.chr6              I 807 C 0
s rheMac8.chr7              164261790 226 - 169600520 aggtcttgcttc-tttattcagcctgacaacctctggtttttacttggagtctttagaccacttgggtttaaatctgtcatctctggggttttccgc-tacatcttt-cacttgtcgctgtctactctctaatggtattaccctgcctgagccttggggcagttctctgactacggcttcctgcttctgacctgttct------tggttggttgtgttgctgtgtcatatatcca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165582663 226 - 171882078 aggtcttgcttc-tttattcagcctgacaacctctggtttttacttggagtctttagaccacttgggtttaaATCTGTCATctctggggttttccgc-tacatcttt-cacttgtcgctgtctactctctaatggtattaccctgcctgagccttggggcagttctctgactacggcttcctgcttctgacctgttct------tggttggttgtgttgctgtgtcatatatcca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       429222 226 +   2379783 aggtcttgcttc-tttattcagcctgacaacctctggtttttacttggagtctttagaccatttgggtttaaatctgtcatctctggggttttccgc-tacatcttt-cacttgtCGCTGTCTACTCTCTAATGGCATTACCCTGCCTGAGCCTTGGGGCAGTTCTCTGACTACGGCTTCCTGCTTCTGACCTGTTCT------TGGTTGGttgtgttgctgtgtcatatatcca
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       395614 226 +   4116138 aggtcttgcttc-tttattcagcctgacaacctctggtttttacttggagtctttagaccacttgggtttaaatctgtcatctctggggttttccgc-tacatcttt-cacttgtcgctgtctactctctaatggtattaccctgcctgagccttggggcagttctctgactacggcttcctgcttctgacctgttct------tggttggttgtgttgctgtgtcatatatcca
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       442604 224 -   3636681 aggtcttgcttc-tttattcagcctgacaacctctggtttttacttggagtctttagaccacttgggtttaaatctgtcatctctggggttttccgc-tacatcttt-cacttgtCGCTGTCTACTCTC--ATGGTATTACCCTGCCTGAGCCTTGGGGCAGTTCTCTGACTACGGCCTCCTGCTTCTGACCTGTTCT------TGGTTGGttgtgttgctgtgtcatatatcca
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       424089 226 -   4457520 aggtcttgcttc-tttattcagcctgacaacctctgtttgttacttggaatctttagaccactGGGGTTTAAATCTGTCATCTCTGGGGTGTTCAGC-TACATCTTT-CACTTGTCGCTGTCCACTCTCTAATGGTATTACCCTGCCTGAGCCTCGGGGCAGTTCTCTGACCATGGCTTCCTGCTTCTGACCTGTTCT------TGGTTGGttgtgttgctgtgtcatatatcca
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             382892 226 +   3845361 gggctttgcttc-tttacccaatcta-----ctctgtcttttatttggaatgtgtaggccatttcggtttaaATTCACCATCTCTGATGTTTGCAGTGTGCATCTTCAAACTTGCCATTGTCCACCTTCAAATGTTACCATACC-CCTGAGCCACCATGCAGTGTTCTGGCTGTGGCTTCCTGCTTCTTCCCTGTTCTTCTCCCTTCTTGAAGATGTTCCTTTACC--ATTTCCA
i otoGar3.GL873689          C 0 I 114
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e chlSab2.chr26              53828643 760 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=5172637.000000
s hg38.chr15_KI270851v1_alt    171508 1234 +    263054 AGTGAAacatggtataaaccccacaatatgatgtttttgtttttgctttaaataggcaattacattttttcccctcaaatttgaaaagagaaaaaaaag------tctttttttttttt------gagacggagttttgctgttgttgcccagactggagtgtaatggcacaatctcagctcactgcaacctccgccacccaggttcaagcgagtctcctgcctcagcctccctagtagctgggattacagacacacaccaccgtgcctggctaacgtttttgtatttttagtagagacagggtttcactatgtttgccaggttcgcctc-gaactcctgaccttaggtgatccacgtgcctcagccacccttaagtgctgggattataggattataggtgtgagccaccacacctggc--cTCttttttttttttttttt--------------------------------------------------gaggcggagttctggtcttgttgcccaggctgccaggatggagtgcaatggcatgatcttggctcactgcagcctctgcctcctgggttcaaacgatt---ctggctcagcctcccgagtagctgggattacaggcatacgccaccacacctggctaattttgtatttttgagtagagacatggtttcgtcatgttggtcaggctggtttcgaactcctgacctcaggtgatccacccacctcggcctcccaaagagccaccatggctggccaaaaaaaagttttttatgttaactttcat-tttaccattatgggcccttaaggttttg-tttctgtcccagctaccttgtgttatcatgttccttcagtttgaagatctccc---tttaccatttctagattttctgacagagaagtttttcagtctgtctgggtatcaattttggctttatctctgaCTCTACACAAATCACTTTGTCTCACCTTGGGCCTCTCATGTATAAAATAGGAATAAGTggccgggtgcagaggctcatgcctgtaatcccagcactttgggaggctgagacgggcggatcatgaggtcaggagatcgagaccatcctggctaacgtggtgaaaccctgtctctac-taaagatac-aaaaaaattagctgggcgtgg-tggtgggcacctgtagtcccagctact-cgggaagctcaggcaggagaatggcatgaacccaggaggcggagcttgcagtgagccaagattgcaccac--cactgtagcctgggtgacagggtgagactccatctcaaaacaaaaaaaacaaa-------c
s panTro5.chr15              73744259 1239 -  83230942 agtgaaacatggtataaaccccacaatatgatgtttttgtttttgctttaaataggcaattacattttttcccctcaaatttgaaaagagaaaaaaa-g------tcttttttttttttttttttgagatggagttttgctgttgttgcccaggctggagtgtaatggcacaatctcagctcactgcaacctccgccacgcgggttcaagcgagtctcctgcctcagcctccctagtagctgggattacaggcacgcaccaccgtgcctggctaatgtttttgtatttttagtagagacagggtttcgctgtgtttgccaggctcgcctc-gaactcatgaccttaggtgatccacgtgcctcagccacccttaagtgctgggattataggattataggtgtgagccaccacacctggc--cTCttttttttttttttttt-------------------------------------ttttttttttttcgatatggagttttgcttttgttggccaggctgccaggatggagtgcaatggcatgatcttggctcactgcaacctctgcctcccggattcaagcaatt---ctggctcagcctcccgagtagctgggattacaggcatgcgccaccacacctggctaattttgtatttttgagtagagacatggtttcgtcatgttggtcaggctggtctcgaactcctgatct----------gcctgccttggccttccaaatagtcactatggctggccagaaaaaagttttttatgttaacttacat-tttaccattatgggcccttaaggttttg-tttctgtcccagctgccttgtgttatcgttttccttcagtttgaagatctccc---tttaccgtttctagatctgctgacagagaagtttttcagtctatctgggtatcaattttggctctatctctgaCTCTACACAAATCACTTTGTCTCACCTTGGGCCTCTCATGTATAAAGTAGGAATAAGTggctgggagcagtggctcatgcct--aatcccagcactttgggaggctgaggtgggtggatcatgatgtcaggagatcgagaccatgctggctaacacggtgaaaccccgtctctac-taaagatac-aaaaaaattagctgggcgtgg-tggtgggcacctgtagtcccagctact-cgggaagctcaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagccaagattgcaccac--cactctagcctgggtgacagggtgagactccatctcaaaacaaaaaaaaaaaa--------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74047272 1273 -  99763055 agtgaaacatggtataaaccccacaatatgatgtttttgtttttgctttaaataggcaattacattttTTCCCCTCAAATTTGAAAAGAGAAAAAAAAG------TCtttttttttttt----ttgagatggagttttgctgttgttgcccaggctggagtgtaatggcacaatctcagctcactgcaacctccgccacgcaggttcaagcgagtctcctgcctcagcctccctagtagctgggattacaggcacgcaccaccgtgcctggctaatgtttttgtatttttagtagagacagggtttcacggtgtttgccaggctcgcctt-gaactcatgaccttaggtgatccacgtgcctcagccacccttaagtgctgggattataggattataggtgtgagccaccacacctggc--cCtttttttttttttttntttttnttttntttNNNNNNNNNNNNNNNNNNNNtttttttttttttttcttgatacggagttttgctcttgttggccaggctgccaggatggagtgcaatggcatgatcttggctcactgcaacctctgcctcctgggttcaagcgatt---ctggctcagcctcccgagtagctgggattacaggcatgcgccaccacacctggctaattttgtatttttgagtagagacatggtttcgtcatgttggtcaggctggtctcgaactcctgatcc----------gcctgccttggccttccaaaTAGTCACTATGGCTGGCCagaaaaaagttttttatgttaacttacat-tttaccattatgggcacttaaggttttg-tttctgtcccagctgccttgtgttatcattttccttcagtttgaagatctccc---tttaccgtttctagatctgctgacagagaagtttttcagtctgtctgggtatcaattttggctctatctctgaCTCTACACAAATCACTTTGTCTCACCTTGGGCCTCTCATGTATAAAGTAGGAATAAGTggctgggagcagtggctcatgcct--aatcccagcactttgggaggctgaggtgggtggatcatgatgtcaggagatcgagaccatgctggctaacacggtgaaaccccgtctctac-taaagatac-aaaaaaattagctgggcgtgg-tggtgggcacctgtagtcccagctact-cgggaagctcaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagccaagattgcaccac--cactctagcctgggtgacagggtgagactccatctcaaaacaaaaaaaaaaaa--------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        96651 1221 -    281578 agtgaaacatggtataaaccccacaatatgatgtttttgtttttgctttaaataggcaattacattttTTCCCCTCAAATTTGAAAAGAGAAAAAAAAG------TCtttttttttttt-----tgagatggagttttgctgttgttgcccaggctggagtgtaatggcacaatctcagctcactgcaacctccaccacgcgggttcaagtgagtctcctgcctcagcctccctagtagctgggattacaggcacacaccaccgtgcccagctaatgtttttgtatttttagtagagacagggtttcactatgtttgccaggctcgcctc-gaactcctgaccttaggtgatccacgtgcctcagccacccttaagtgctgggattataggattataggtgtgagccaccacacctggc--cTCtttttttttt---------------------------------------------------------gatatggagttttgctcttgttgcccaggctgccaggatggagtgcaatggcatgatcttggctcactgcaacctctgcctcctgggttcaagcgatt---ctggctcagcctcccgagtagctgggattacaggcatgtgccaccacacctggctaattttgtatttttgagtagagacatggtttcgtcatgttggtcaggctggtctcgaactcctgatcc----------acctgccttggccttccaaaTAGCCACCATGGCTGGCCAGAAAAAAGTTTTTTATGTTAACTTACGT-TTTACCATTATGGGCCCTTAAGGTTTTG-TTTCTGTCCCAGCTGCCTTGTGTTATCGTTTTCCTTCAGTTTGAAGATCTCCC---TTTACCGTTTCTAGATCTGCTGACAGAGAAGTTTTTCAGTCTGTCTGGGTATCAATTTTGGCTTTATCTCTGACTCTACACAAATCACTTTGTCTCACCTTGGGCCTCTCATGTATAAAGTAGGAATAAGTggctgggagcagtggctcacgcct--aatcccagcactttgggaggctgaggtgggtggatcatgatgtcaggagatcgagaccatgctggctaacacggtgaaaccctgtctctttgtaaagatac-aaaaaaattagctgggcgtgg-tggtggccacctgtagtcccagctact-cgggaagctcaggcaggagaatggcgtgaacccaggaggcggagcttgcagtaagccaagattgcaccac--cactctagcctgggtgacagggtgagactccatctcaaaacaaaaacaaaaaa---aaaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70955070 1240 + 121039945 agtgaaacatagtataaaccccacaatatgatgtttttgtttttgctttaaataggcaattatattttttcccctcaaatttgaaaagagaaaaaaaag------tctttttttttttt-tttttgagatggagttttgctcttgttgcccaggctggagtgtaatgacacaatctcagctcactgcaacctccgccacccgggttcaagtgagtctcctgtctcagcctccctagtagctgggattacaggcactccccaccgtgcctggctaatgtttttgtatttttagtagagacagcgtttcactacgtttgccaggctcgcctc-gaactcctgactttaggtgatccacctgcctcagctaccc-taagtgctgggattataggattataggtgtgagccaccacacttggc--cTCttttttttttttttttt---------------------------------------------tttttgagacagagttttgc---------ccaggctgccaggctggagtgcaatggcatgatcttgactcactgcaacctctgcctcctgggttcaagcaatt---ctggctcagcctcccgagtagctgggattacaggcatgtgc--ccacacctggctaattttgtatttttgagtagagacatggtttcgtcatgttggtcaggctggtctcgaactcctgacctcagttgatccacccgccttggcctcccaaagagccaccatgactggccagaaaaaagttttttatgttaacttacat-tttaccattgtgggcccttaagggtttg-tttctatcccagctgccttgtgttatcattttccttcagtttgaagatctccc---tttaccgtttctaaatctgctgacagagaagtttttcggtctgcctgggtatcgattttggctttatctcaGACTCTACACAAATCACTTGGTCTCACCTTGGGCCTCTCATGTATAAAATAGGAATAAGTggctgggcgcagtgtttcacgcctgtaatcccggcaccttgggaggctgaggcaggcggatcatgaggtcagaagatcgagaccatcctggctaacacagtgaaaccccgtctctac-taaagatacaaaaaaaattagccgggcatgg-tggtggacacctgtattcccagctact-caggaagctcaggcaggagaatggcatgaacccaggaggcggaggttgcagtgagccaagattgcaccac--cactctagcctgggtgacagagtgagactccatctcaaaacaaaacaaaaaaacaaaacaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164262016 1228 - 169600520 agtgaaacatggtgtaaaccccacaatatgctgtttttgtttatgctttaaataggcaattacattttttcccctcaaaattgaaaagaaaaaaaagtctttttttttttttttttttt-----tgagacagagttttgctcttgttgcccaggctagagtgcaatggcatgatctcagctcactgcaacctccacctcctgggtttaagcagttctcctgcctcagcctccctagtatctgggattacaggcacaccccactatgcccagctaatgtttttgtatttttagtggagacagggtttcaccatgttggccaggctggcctc-taactcctgaccttaggtgatccacctgcctcagcctccc-aaagtgctg--------gaattataggcgtg-accaccacacccggc--ttttttttttt-----------------------------------------------------------gagatggagttttgcttttgttgcccaggctgccaggctggagtgcaatggcgcaatcttggctcactgcaatctctgcctcctgggtccacgctattctcctggttcagcctcccgagtcgctgggattacaggcatttgccaccacacatggctaattttgtatttttgagtagagacagggtttcatcatgttggtcaagctggt---gaactcctgacctcagatgatccacccgcctgggcctcccaaagagccaccctgagtggccaaataaaagtattgtatgttaacctacatgtttgccattttgggcccttaaggttttg-tttatagcccagctgccttctggtatcattttccttcagtttgaagatctccctaatttaccatttctagatctgctggcagagaagtttttcagtctgtttgggtatcAATTTTGGCTTTATCTCTGACTCTACACAAATCACTTTGTCTCACCTTGGGCCTCTCATGTATAAAATCGG--CAAGTggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggccaggagattgagaccatcctggctaatatggtgaaaccccatctctac-taaagatac-aaaaacattagccggggatggttggcaggcgcctatagtcccatcttctgggggaggctcaggcaggagaatagcatgaacctgggaggcccaggttgcagtgagccaagatcgtgctgttgcattccagcctgggtgacagagtgagactctgtctcaaaaaaaaaaaaaaaaa---a----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165582889 1228 - 171882078 agtgaaacatggtgtaaaccccacaatatgctgtttttgtttatgctttaaataggcaattacattttttcccctcaaaattgaaaagaaaaaaaaagtcttttttttttttttttttt-----tgagacagagttttgctcttgttgcccaggctagagtgcaatggcatgatctcagctcactgcaacctccacctcctgggttcaagcagttctcctgcctcagcctccctagtatctgggattacaggcacaccccactatgcccagctaatgtttttgtatttttagtggagacagggtttcaccatgttggccaggctggcctc-taactcctgaccttaggtgatccacctgcctcagcctccc-aaagtgctg--------gaattataggcgtg-gccaccacacccggc--ttttttttttt-----------------------------------------------------------gagatggagttttgcttttgttgcccaggctgccaggctggagtgcaatggcgcaatcttggctcactgcaatctctgcctcctgggtccacgctattctcctggttcagcctcccgagtcgctgggattacaggcatttgccaccacacatggctaattttgtatttttgagtagagacagggtttcatcatgttggtcaggctggt---gaactcctgacctcagatgatccacccgcctgggcctcccaaagagccaccttgagtggccaaataaaagtattgtatgttaacctacatgtttgccattttgggcccttaaggttttg-tttatagcccagctgccttctggtatcattttccttcagtttgaagatctccctaatttaccatttctagatctgctggcagagaagtttttcagtctgtttgggtatcaattttggctttatctctgaCTCTACACAAATCACTTTGTCTCACCTTGGGCCTCTCATGTATAAAATCGG--CAAGTggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggccaggagattgagaccatcctggctaatatggtgaaaccccatctctac-taaagatac-aaaaacattagccggggatggttggcaggcgcctatagtcccatcttctgggggaggctcaggcaggagaatagcatgaacctgggaggctcaggttgcagtgagccaagatcgtgctgttgcattccagcctgggtgacagagtgagactctgtctcaaaaaaaaaaaaaaaaa---a----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       429448 1212 +   2379783 agtgaaacatggtgtaaaccccacaatatgctgtttttgtttatgctttaaataggcaattacattttttcccctcaaaattgaaaagaaaaaaaaagtc-----tttttttttttttt-----tgagacagagttttgctcttgttgcccaggctagagtgcaatggcatgatctcagctcactgcaacctccgcctcctgggttcaagcagttctcctgcctcagcctccctagtatctgggattacaggcacaccccactatgcccagctaatgtttttgtatttttagtggagacagggtttcaccatgttggccaggctggcctc-taactcctgaccttaggtgatccacctgcctcagcctccc-aaagtgctg--------gaattataggcatg-gccaccacacccggc--ttttttttttt-----------------------------------------------------------gagatggagttttgcttttgttgcccaggctgccaggctggagtgcaatggtgcaatcttggctcactgcaacctctgcctcctgggtccacgctattctcctggttcagcttcccgagtcgctgggattacaggcatttgccaccacacatggctaattttgtatttttgagtagagacagggtttcatcatgttggtcaggctggt---gaactcctgacctcagatgatccacccgcctgggcctcccaaagagccaccttgagtggccaaataaaagtattttatgttaacctacatgtttaccattttgggcccttaaggttttgttttatagcccagctgccttctggtatcattttccttcagtttgaagatctccctaatttaccatttctagatctgctggcagagaagtttttcagtctgtttgggtatcaattttggctttatctctgaCTCTACACAAATCACTTTGTCTCACCTTGGGCCTCTCATGTATAAAATCGG--CAAGTggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggccaggagattgagaccatcctggctaatatggtgaaaccccatctctac-taaagatac-aaaaacattagccggggatggttggcaggcgcctatagtcccatcttctgggggaggctcaggcaggagaatagcatgaacctgggaggctcaggttgcagtgagccaagatcgtgctgttgcattccagcctgggtgacagagtgagactctgtctcaaaaaa-------------------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       395840 1217 +   4116138 agtgaaacatggtgtaaaccccacaatatgctgtttttgtttatgctttaaataggcaattacattttttcccctcaaaattgaaaagagaaaaaaaagtctttttttttttttttttt-----tgagacagagttttgctcttgttgcccaggctagagtgcaatggcatgatctcagctcactgcaacctccgcctcctgggttcaagcaattctcctgcctcagcctccctagtatctgggattacaggcacaccccactatgcccagttaatgtttttgtatttttagtggagacagggtttcaccatgttggccaggctggcctc-taactcctgaccttaggtgatccacctgcctcagcctccc-aaagtgctg--------gaattacaggcgtg-gccaccacacccggc--ttttttttttt-----------------------------------------------------------gagatggagttttgcttttgttgcccaggctgccaggctggagtgcaatggcgcaatcttggctcactgcaacccctgcctcctgggtccacgctattctcctggttcagcctcccgagtcgctggaattacaggcatttgccaccacacatggctaattttgtatttttgagtagagacagggtttcatcatgttggtcaggctggt---gaactcctgacctcagatgatccacccgcctgggcctcccaaagagccaccttgagtggccaagtaaaagtattgtatgttaacctacatgtttaccattttgggcccttaaggttttg-tttatagcccagctgccttctggtatcattttccttcagtttgaagatctccctaatttaccatttctagatctgctggcagagaagtttttcagtctgtttgggtatcaattttggctttatctctgaCTCTACACAAATCACTTTGTCTCACCTTGGGCCTCTCATGTATAAAATCAG--CAAGTggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcatgaggccaggagattgagaccatcctggctaatatggtgaaaccccatctctac-taaagatac-aaaaaaattagcgggggatggttggcaggcacctatagtcccatcttctgggggaggctcaggcaggagaatggcatgaacctgggaggctcaggttgcagtgagccgagatcgtgctgttgcattccagcctgggtgacagagtgagactctgtctcaaaaaa--------------a----
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       442828 1217 -   3636681 agtgaaacatggtgtaaaccccacaatatgctgtttttgtttatgctttaaataggcaattacattttttcccctcaaaattgaaaagagaaaaaaaag------tctttttttttttt-----tgagacagagttttgctcttgttacccaggctagagtgcaatggcatgatctcagctcactgcaacctccgcctcctgggttcaagcaattctcctgcctcagcctccctagtatctgggattacaggcacaccccactatgcccagctaatgtttttgtatttttagtggagacagggtttcaccatgttggccaggctggcctc-taactcctgaccttaggtgatccacctgcctcagcctccc-aaagtgctg--------gaattataggcgtg-gccaccacacccggc--ttttttttttt-----------------------------------------------------------gagatggagttttgcttttgttgcccaggctgccaggctggagtgcaatggcgcaatcttggctcactgcaacctctgcctcctgggtccacgctattctcctggttcagcctcccgagtcgctgggattacaggcatttgccaccacacatggctaattttgtatttttgagtagagacagggtttcatcatgttggtcaggctggt---gaactcctgacctcagatgatccacccgcctgggcctcccaaagagccaccttgagtggccaaataaaagtattgtatgttaacctacatgtttaccattttgggcccttaaggttttg-tttatagcccagctgccttctggtatcattttccttcagtttgaagatctccctaatttaccatttctagatctgctggcagagaagtttttcagtctgtttgggtatcAATTTTGGCTTTATCTCTGACTCTACACAAATCACTTTGTCTCACCTTGGGCCTCTCATGTATAAAATCAG--CAAGTggctgggcgcggtggctcacacctgtaatcccagcactttgggaggctgaggcgggcggatcatgaggccaggagattgagaccatcctggctaatatggtgaaaccccatctctac-taaagatac-aaaaaaattagccggggttggttggcaggcgcctatagtcgcatcttctgggggaggctcaggcaggagaatggcatgaacctgggaggctcaggttgcagtgagccgagatcgtgctgttgcattccagcctgggtgacagagtgcgactctgtctcaaaaaaaaaaaaa------------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       424315 1222 -   4457520 aatgaaacatggtgtaaaccccacaatatgctgtttttgtttatgctttaaataggcaattacattttttcccctcaaaattgaaaagagaaaaaaaaa------agtctttttttttt-----tgagacagagttttgctcttgttgcccaggctggagtgcagtggcatgatctcagctcactgcaacctcctcctcctgggttcaagcaattctcctgccccagtcttcctagtagctgggattacaggcacaccccaccatgcccaactaatgtttttgtatttttagtggagacagggtttcaccatgttggccaggctggcctcttaactcctaaccttaggtgatccacctgcctcagcctccc-aaagtgctg--------gaattataggcgtgagccaccacacccggcttttttttttttt-----------------------------------------------------------gagatggagttttgcttttgttgcccaggctgccaggctagagtgcaatggcgcaatcttggttcacttcaacctctgcctcctgggtccacgctattctcctggctcagcttcccgagtcgctggggtcacaggcatgtgccaccacacatggttacttttgtatttttgagtaaagacagggtttcatcatgttggtcaggctggt---gaactcctgacctcagatgatccacctgcctgggcctcccaaagagccaccttgagtggccaaataaaaatattgtatgttaacctacatgtttaccattttgggcccttaaggttttg-tttatatcccagctgccttctggtatgattttccttcagtttgaagatctccttaatttaccatttctagatctgctggcagagaagtttttcagtctgtctgggtatcaattttggctttatctctgaCTCTACACAAATCACTTTGTCTCACCTTGGGCCTCTCATGTATAAAATCAGAATAAGTggctgggcgcggtggctcacgcctgtagtcccagcactttgggaggctgacgcgggcggattacgaggccaggagattgagaccatcctggctaatatggtgaaaccccatctctac-taaagatac-aaaaaaattagctggggatggttggcaggcgcctgtagtcccatcttct-ggggaggctcaggcaggagaatggcatgaacctgggaggctcaggttgcagtgagctgagatcgtgctgctgcactccagcctgggtgacagagtgagactctgtctcaaaaaaaaaaaaa------------
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             383118  114 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e chlSab2.chr26              53828643  760 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=184576.000000
s hg38.chr15_KI270851v1_alt    172742 48 +    263054 aaaaaaaaGGAataagtataatata--atgtaaataattaaAAt-------tatata
s panTro5.chr15              73745498 45 -  83230942 ---aaaGAGGAataagtataatata--atgtaaataattaaAAt-------tatata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74048545 45 -  99763055 ---aagaaGGAataagtataatata--atgtaaataattaaAAt-------tatata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        97872 48 -    281578 aaaaaaGAGGAATAAGTATAATATA--ATGTAAACAATTAAAAt-------tatata
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70956310 48 + 121039945 acaaaAAAGGAataagtataatata--atgtaaataattaaaat-------TGTAta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164263244 55 - 169600520 aaaaaaaaGGAataagtataatata--atgtaaataattaaaattatataatatata
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165584117 55 - 171882078 aaaaaaaaGGAATAAGTATAATATA--ATGTAAATAATTAAAATTATATAATATATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       430660 18 +   2379783 ---------------------------------------aaaaTTATATAATatata
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       397057 55 +   4116138 aaagaaaagaaataagtataatata--atgtaaataattaaaattatattatatata
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53829403 48 +  58131712 aaaaaaaaaaaaaaaGTATAATATA--ATGTAAATAATTAAAAt-------tatata
i chlSab2.chr26             I 760 C 0
s manLeu1.NW_012102332v1       444045 48 -   3636681 -------aGGAataagtataatata--atgtaaataattaaaattatGTTATatata
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       425537 54 -   4457520 ---aaaaaGGAATAAGtataatataatatgtaaataattaaaattatatgatatata
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             383118 114 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=746568.000000
s hg38.chr15_KI270851v1_alt    172790 138 +    263054 taaaataagtgaaag----tac----ttactcagagagttgctgtgcaaatgacatgaa--ataatgcatttgaagctcttaagtcagtgcctggcaca-aatgtttgataaagatt---tgttgtgattTTAAAA-ATCTGTTATTTT-------GCCT
s panTro5.chr15              73745543 134 -  83230942 taaaataagtgaaag----tac----tta----gagagttgctgtgcaactgacatgaa--gtaatgcatttgaagctcctaagtcagtgcctggcaca-aatgtttgataaacatt---tgttgtgattTTAAAA-ATCTGTTGTTTT-------GCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74048590 134 -  99763055 taaaataagtgaaag----tac----tta----gagagttgctgtgcaactgacatgaa--gtaatgcatttgaagctcctaagtcagtgcctggcaca-aatgtttgataaacatt---tgttgtgattTTAAAA-ATCTGTTGTTTT-------GCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        97920 134 -    281578 taaaataagtgaaag----tac----tta----gagagttgctgtgcaactgacatgaa--gtaatgcatttgaagctcctaagtcagtgcctggcaca-aatgtttgataaacatt---tgttgtgattTTAAAA-ATCTGTTGTTTT-------GCCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70956358 140 + 121039945 taaaataagtgaaag----tac----ttactcagagagttgctgtggaaatgacatgaaatataatgcatttgaagctcctaagtcagggcctggcaca-aatgtttgataaacatt---tgttgtgattTTAAAA-ATCTGTTGTTTT-------GCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164263299 134 - 169600520 taaaataaatgaaag----tac-----ca----gagagttgctgtgcaaatgacatgaa--ataatgcacttgaagctcctaagtcagtgcctggcacatactgtttgataaacatt---tgttgtgattTTAAAA-ATCTGTTGTTTT-------TCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165584172 134 - 171882078 TAAAATAAATGAAAG----TAC-----ca----gagagttgctgtgcaaatgacatgaa--ataatgcacttgaagctcctaagtcagtgcctggcacatactgtttgataaacatt---tgttgtgattTTAAAA-ATCTGTTGTTTT-------TCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       430678 139 +   2379783 taaaataaatgaaag----tacttactca----gagagttgctgtgcaaatgacatgaa--ataatgcacttgaagctcttaagtcagtgcctggcacatactgtttgataaacatt---tgttgtgattTTAAAA-ATCTGTTGTTTT-------TCCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       397112 132 +   4116138 taaaataaatgaaag----tac----tca----gagagttgctgtgcaaatgacatgaa--ataatgcacttgaagctcctaagtcagtgcctggcacatactgtttgataaacatt---tgttgtgattTTAAAA-ATC---TGTTTT-------TCCC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53829451 136 +  58131712 taaaataagtgaaagtacttac----tca----gagagttgctgtgcaaatgacatgaa--ataatgcacttgaagctcctgagtcagtgcctggcacatactgtttgataaacatt---tgttgtgattTTAAAA-ATC---TGTTGT-------TTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       444093 132 -   3636681 taaaataaatgaaag----tac----tca----gagagttgctgtgcaaatgacatgaa--ataatgcacttgaagctcctaagtcagtgcctggcacatactgtttgataaacatt---tgttgtgattTTAAAA-ATC---TGTTTT-------TCCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       425591 135 -   4457520 taaaataaGTGAAAG----TAc----tca----gagagttgctgtgcaaatgacatgaa--ataatgcgcttgaagctcctaaatcagtgcctggcacatattgtttgataaacatt---tattgtaattTTAAAA-ATCTGTTGTTTT-------TCCC
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             383232 149 +   3845361 tataattaataaaag----tac----ttactcagagggttgttgtgaagatgagatgaa--atgctgtgtatgacagtcctaactcagtgcctggcaagcacagtGTG-TAGATGTTTGGTGCTGTGATTTTAAAATATTTTCTGTTTTgggcagcgcct
i otoGar3.GL873689          I 114 I 106
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=1870891.000000
s hg38.chr15_KI270851v1_alt    172928 308 +    263054 TTCTCCATGTTTCCCCTCACCTAGGTATCAAAGTACCTACAGTTATGGGTGGGTAACTAG-ACTAAAAAT-GTACCTTTCTTGCTCAGATTAAAGCCCGGCTTA-----TTGACTCAGGGC-AGCTTTAATC-----GGTTTAT-TTGGAAGCTCTGCTTGTTCACAGGTACAGAGCTTTTGCAGAACCGACTCTGTACCTGGCAGCCTTGAAGGGGCTTGGATTCAAAGCATATTCTTGAGCCACGCCATCTTTAA-TCAAACTGCAGGTGGAATTTGTAGCTGTTAGAATAGCTCCTATTCCTTTCATTTCTTTTTCTGTT
s panTro5.chr15              73745677 313 -  83230942 TTCTCCTTGTTTCCCCTCACCTAGGTATCAAAGTACCTACAGTTATGGGTGGGTAACTAG-ACCGGAAAT-ACACCTTTCTTGCTCAGATTAAAGCCCAGCTTA-----TTGACTCAGGGT-GGCTTTAATGAAGAGGGTTTAC-TTGGAAGCTCTGCTTGCTCACAGGTACAGAGCTTTCGCAGAACCGACTCTCTACCTGGCAGCCTTGAAGGGGCTTGGATTCAAAGCATATTCTTGAGCCACGCCATCTTTAA-TCAAACTGCAGGTGGAATTTGTAGCTGTTAGAATAGCTCCTATTCCTTTCATTCCTTTTTCTGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74048724 313 -  99763055 TTCTCCTTGTTTCCCCTCACCTAGGTATCAAAGTACCTACAGTTATGGGTGGGTAACTAG-ACCCGAAAT-ACACCTTTCTTGCTCAGATTAAAGCCCAGCTTA-----TTGACTCAGGGT-GGCTTTAATGAAGAGGGTTTAC-TTGGAAGCTCTGCTTGCTCACAGGTACAGAGCTTTCGCAGAACCGACTCTCTACCTGGCAGCCTTGAAGGGGCTTGGATTCAAAGCATATTCTTGAGCCACGCCATCTTTAA-TCAAACTGCAGGTGGAATTTGTAGCTGTTAGAATAGCTCCTATTCCTTTCATTCCTTTTTCTGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        98054 313 -    281578 TTCTCCTTGTTTCCCCTCACCTAGGTATCAAAGTACCTACAGTTATGGGTGGGTAACTAG-ACCCGAAAT-ACACCTTTCTTGCTCAGACTAAAGCCCAGCTTA-----TTGACTCAGGGT-GGCTTTAATGAAGAGGGTTTAC-TTGGAAGCTCTGCTTGCTCACAGGTACAGAGCTTTAGCAGAACCGACTCTCTACCTGGCAGCCTTGAAGGGGCTTGGATTCAAAGCATATTCTTGAGCCACGCCATCTTTAA-TCAAACTGCAGGTGGAATTTGTAGCTGTTAGAATAGCTCCTATTCCTTTCATTACTTTTTCTGTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70956498 313 + 121039945 TTCTCCTTCTTTCCCCTCACCTAGGTATCAAAGTACCTACAGTTATGGGTGGGTAACTAG-ACCAAAAAT-ACGCCCTTCTTGCTGAGATTAAAGCCTGGCTTA-----TTGACTCAGGGT-GGCTTTAATGAAGTGGGTTTAC-TTGGAAGCTCTGCTTGCTCACAGGTACAGAGCTTTCGCAGAACTGACTCTCTACCTGGCAGCCTTGAAGGGGCTTGGATTCAAAGCATATTCTTCAGCCACGTCATCTTTAA-TCAAACTGCAGGTGGAATTTGTAGCTTTTAGAATAGCTCCTATTCCTTTCATTCCTTTTTCTGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164263433 314 - 169600520 TTCTCCTTCTTTCCCCTCACCTAGGCATCAAAGTACCTACAGTTATGGGTGTGTAATTAG-ATCAAAAATAATACCTTTCTTGCTCAGATTAAAGCCCAGCTTA-----TTGACTCACGGT-GGCTTTAATGAAGAGGGTTTTCTTTGGAAGCTCTGCTTGCTCACAGGTACAGAGCTTTCGCAGAGCCAGCTCTCTACCTGGCAGCCTTGAAGGAGCTTGAATCAAAAGCATATTCTTGAGCCATGTCATCTTTAA-TCAAACTGCAGGTGGAATTTGTAGCTTTTAGAATAGCTCCTATTCCTTTCATTCCTTTTT-TCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165584306 314 - 171882078 TTCTCCTTCTTTCCCCTCACCTAGGCATCAAAGTACCTACAGTTATGGGTGTGTAATTAG-ATCAAAAATAATACCTTTCTTGCTCAGATTAAAGCCCAGCTTA-----TTGACTCACGGT-GGCTTTAATGAAGAGGGTTTTCTTTGGAAGCTCTGCTTGCTCACAGGTACAGAGCTTTCGCAGAGCCAGCTCTCTACCTGGCAGCCTTGAAGGAGCTTGAATCAAAAGCATATTCTTGAGCCATGTCATCTTTAA-TCAAACTGCAGGTGGAATTTGTAGCTTTTAGAATAGCTCCTATTCCTTTCATTCCTTTTT-TCTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       430817 314 +   2379783 TTCTCCTTCTTTCCCCTCACCTAGGCATCAAAGTACCTACAGTTATGGGTGTGTAATTAG-ATCAAAAATAATACCTTTCTTGCTCAGATTAAAGCCCAGCTTA-----TTGACTCACGGT-GGCTTTAATGAAGAGGGTTTTCTTTGGAAGCTCTGCTTGCTCACAGGTACAGAGCTTTCGCAGAGCCAGCTCTCTACCTGGCAGCCTTGAAGGAGCTTGGATTAAAAGCATATTCTTGAGTCACATCATCTTTAA-TCAAACTGCAGGTGGAATTTGTAGCTTTTAGAATAGCTCCTATTCCTTTCATTCCTTTTT-TCTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       397244 314 +   4116138 TTCTCCTTCTTTCCCCTCACCTAGGCATCAAAGTACCTACAGTTATGGGTGTGTAATTAG-ATCAAAAATAATACCTTTCTTGCTCAGATTAAAGCCCAGCTTA-----TTGACTCACGGT-GGCTTTAATGAAGAGGGTTTTCTTTGGAAGCTCTGCTTGCTCACAGGTACAGAGCTTTTGCAGAGCCAGCTCTCTACCTGGCAGCCTTGAAGGAGCTTGAATCAAAAGCATATTCTTGAGCCATGTCATCTTTAA-TCAAACTGCAGGTGGAATTTGGAGCTTTTAGAATAGCTCCTATTCCTTTCATTCCTTTTT-TCTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53829587 314 +  58131712 CCCTTCTCCTTTCCTCTCACCTAGGCATCAAAGTACCTACAGTTATGGGTGTGTAATTAG-ATCAAAAATAATACCTTTCTTGCTCAGATTAAAGCCCAGCTTA-----TTGACTCAGGGT-GGCTTTAATGAAGAGGGTTTTCTTTGGAAGCTCTGCTTGCTCACAGGTACAGAGCTTTCGCAGAGCCAGCTCTCTACCTGGCAGCCTTGAAGGAGCTTGAATCAAAAGCATATTCTTGAGCCATGTCATCTTTAA-TCAAACTGCAGGTGGAATTTGTAGCTTTTAGAATAGCTCCTATTCCTTTCATTCCTTTTT-TCTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       444225 314 -   3636681 TTCTCCTTCTTTCCCCTCACCTAGGCATCAAAGTATCTACAGTTATGGGTGTGTAATTAG-ATCAAAAATAATACCTTTCTTGCTCAGATTAAAGCCCAGCTTA-----TTGACTCACAGT-GGCTTTAATGAAGAGGGTTTTCTTTGGAAGCTCTGCTTGCTCACAGGTACAGAGCTTTCGCAGAGCCAGCTCTCTACCTGGCAGCCTTGAAGGAGCTTGAATCAAAAGCATATTCTTGAGCCATGTCATCTTTAA-TCAAACTGCAGGTGGAATTTGGAGCTTTTAGAATAGCTCCTATTCCTTTCATTCCTTTTT-TCTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       425726 314 -   4457520 TTCTCCTTCTTTCCCCTCACCTAGGCATCAGAGTACCTACAGTTATGGGTGTGTAATTAG-ATCAAAAATAATACCTTTCTTGCTCAGATTAAAGCCCAGCTTA-----TTGATTCAGGGT-GGCTTTAATGAAGAGGGTTTTCTTTGGAAGCTCTGCTTGCTCACAGGTACAGAGCTTTCGCAGAGCCAGCTCTCTACCTGGCAGCCTTGAAGGAGCTTGAATCAAAAGCATATTCTTGAGCCATGTCATCTTTAA-TCAAACTGCAGGTGGAATTTGTAGCTTTTAGAATAGCTCCTGTTCCTTTCATTCCTTTTT-TCTT
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             383487 321 +   3845361 CTCTCCTTCCTTTACCCCTCCTAGGCATTGAGGTGCTCAAGGCTAGGGGTGGGCAAGTAGAACCATAAATTGTACCTCTTCTGCTCATA-TGGAGCCCAGACTGACACCTTGACTTAGGGTGGGCTTTAGTGGAGAGGGTTTCCTCTGGGGGCAGTGCTTGCTTCTAGGAGTGGAGCTCACTCAGAACCAGCTGTTTACTTGGCAGCCTCCAGGGACCTAGGATTTAAAGCATATTCTTAAGATAGGGAGTCTTGAAGTCAAACTGCAAGTGGAATTTATATTTTTTAG-ATTGCATCCCTTTCTTTCATTTTTTTAACTTTT
i otoGar3.GL873689          I 106 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13450792 3790 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=397468.000000
s hg38.chr15_KI270851v1_alt    173236  62 +    263054 TTTT--------------------------------------TACTCTTCCATCTCAGCCT-AAAAAGAAAAACACGTTAATTT-GAGCCATAGGAATTTAG
s panTro5.chr15              73745990  62 -  83230942 TTTT---------------------------------------GCTCTTTCATCTCAACCG-AAAAAGAAAAACACATTAATTTTGAGCCATAGGAATTTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74049037  62 -  99763055 TTTT---------------------------------------GCTCTTTCATCTCAACCG-AAAAAGAAAAACACATTAATTTTGAGCCATAGGAATTTAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        98367  62 -    281578 TTTT---------------------------------------GCTCTTTCATCTCAACCG-AAAAAGAAAAACACATTAATTTTGAGCCATAGGAATTTAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70956811 100 + 121039945 TTTTTGCTCTTCCATCTCAACCTAAAAAGAAAATCTGTTTTTTGCTCTTCTGTCTCAACCT-AAAAAGAAAAACACATTAATTT-GAGCCATAGGAATTTAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164263747  61 - 169600520 TTTT---------------------------------------GCTCTTCCAGCTCAACCT-AAAAAGAGAAACACATTAATTT-GAGCCATGGGAATTTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165584620  61 - 171882078 TTTT---------------------------------------GCTCTTCCAGCTCAACCT-AAAAAGAGAAACACATTAATTT-GAGCCATGGGAATTTAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       431131  61 +   2379783 ATTT---------------------------------------GCTCTTCCAGCTCAACCT-AAAAAGAGAAACACATTAATTT-GAGCCATGGGAATTTAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       397558  61 +   4116138 TTTT---------------------------------------GCTCTTCCAGCTCAACCT-AAAAAGAGAAACACATTAATTT-GAGCCATGGGAATTTAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53829901  61 +  58131712 TTTT---------------------------------------GCTCTTCCAGCTCAACCT-AAAAAGAGAAACACATTAATTT-GAGCCATGGGAATTTAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       444539  61 -   3636681 TTTT---------------------------------------GCTCTTCCAGCTCAACCT-AAAAAGAGAAACACATTAATTT-GAGCCATGGGAATTTAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       426040  61 -   4457520 TTTT---------------------------------------GCTCTTCCAGCTCAACCT-AAAAAGAGAAACACATTAATTT-GAGCCATGGGAATTTAG
i colAng1.NW_012115278v1    C 0 C 0
s proCoq1.NW_012148396v1     13454582  63 +  16154928 TTTT--------------------------------------TGCTCTTCCATCTCAACCTAAAAAAGAAAAACACATTAATTT-GAACCATAGGAATTTAG
i proCoq1.NW_012148396v1    I 3790 I 245
s otoGar3.GL873689             383808  56 +   3845361 -------------------------------------------GTTCT--CATCTCAACCGAAAAAAGAAAAACACATTAATTT-AAACCATAGGATCTTAG
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=1366317.000000
s hg38.chr15_KI270851v1_alt    173298 244 +    263054 AATTTGTTTTTTCTTTTGCTTAGATATGTTTGACTAAAGCTTCCTTTTTCACAGGTTTATttttt-ccaacattttatt--atg-----aaa----aaaatatatacagaaaagttgaaagaattttacagcgcgcacccacatattcaccacctaagattgtgccgctggcatcatcccacgtgctttatcaccgttctctccaccttttcatccttctattcatcca---tcagtccctcacatttttttt-gcaatg
s panTro5.chr15              73746052 245 -  83230942 AACTTGTTTTTTCTTTTGCTTAGATACGTTTGACTAAAGCTTCCTTTTTCACAGGTTTATTtttttccaacgttttatt--atg-----aaa----aaaat-tatacagaaaagttgaaagaattttacagcgcgcacccacatattcaccacctgagactgtgccgctggcattatcccacgtgctttatcaccgctctctccaccttttcgtccctctattcatcca---tcagtccctcacatttttttttgcaatg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74049099 245 -  99763055 AACTTGTTTTTTCTTTTGCTTAGATACGTTTGACTAAAGCTTCCTTTTTCACAGGTTTATTtttttccaacgttttatt--atg-----aaa----aaaat-tatacagaaaagttgaaagaattttacagcgcgcacccacatattcaccacctgagactgtgccgctggcattatcccacgtgctttatcaccgctctctccaccttttcgtccctctattcatcca---tcagtccctcacatttttttttgcaatg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        98429 243 -    281578 AACTTGTTTTTTCTTTTGCTTAGATACGTTTGACTAAAGCTTCCTTTTTCACAGGTTTATttttt-ccaacgttttatt--atg-----aaa----aaaat-tatacagaaaagttgaaagaattttacagtgcgcacccacgtattcaccacctgagactgtgccgctggcattatcccacgtgctttatcaccgctctctcgaccttttcgtccctctattcatcca---tcagtccctcacatttttttt-gcaatg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70956911 243 + 121039945 AACTTGTTTTTTCTTTTGCTTAGATATGTTTGACTAAAGCTTCCTTTTTCACAGGTTTATttttt-ccaacattttatt--atg-----aaa----caaatatatacagaaaagttgaaagaattttacagtgcacacccacatattcaccacctaagattgtgctgctggcatcatcccacgtgctttatcaccgctctctccaccttttcgtccctctattcatcca---tcagtccctcatattttttt--gcaatg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164263808 241 - 169600520 AACTTGTTTTTTCTTTTGCTTAGATGTGTTTGACTAAAGCTTCCTTTTTCACAGATTTATttttt-ccaacattttatt--atg-----aaa----aaaa--aaaacagaaaagttgaaagagttttacagtgcgcacccacgtattgaccacctaagactgtgccgctggcgttatcccacattctttatcacagctctctccaccttttcgtgcctctattcatcca---tcagtccctcacattcttttt--cagtg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165584681 241 - 171882078 AACTTGTTTTTTCTTTTGCTTAGATGTGTTTGACTAAAGCTTCCTTTTTCACAGATTTATttttt-ccaacattttatt--atg-----aaa----aaaa--aatacagaaaagttgaaagagttttacagtgcgcacccacgtattgaccacctaagactgtgccgctggcgttatcccacattctttatcacagctctctccaccttttcgtgcctctattcatcca---tcagtccctcacatttttttt--cagtg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       431192 241 +   2379783 AACTTGTTTTTTCTTTTGCTTAGATGTGTTTGACTAAAGCTTCCTTTTTCACAGATTTATttttt-ccaacattttatt--atg-----aaa----aaaa--aatacagaaaagttgaaagagttttacagtgcgcacccacatattgaccacctaagactgtgccgctggcgttatcccacattctttatcacagctctctccaccttttcctgcctctattcgtcca---tcagtccctcacatttttttt--cagtg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       397619 246 +   4116138 AACTTGTTTTTTCTTTTGCTTAGATGTGTTTGACTAAAGCTTCCTTTTTCACAGATTTATttttt-ccaacattttatt--atgaaaaaaaa----aaaa--aatacagaaaagttgaaagagttttacagtgcgcacccacgtattgaccacctaagactgtgccgctggcgttatcccacattctttatcacagctctctccaccttttcgtgcctgtattcatcca---tgagtccctcacatttttttt--cagtg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53829962 240 +  58131712 AACTTGTTTTTTCTTTTGCTTAGATGTGTTTGACTAAAGCTTCCTTTTTCACAGATTTATttttt-ccaacattttatt--atg------aa----aaaa--aatacagaaaagttgaaagagttttacagtgcgcacccacgtattgaccacctaagactgtgccgctggcgttatcccacattctttatcacagctctctccaccttttcgtgcctctattcatcca---tcagtccctcacatttttttt--cagtg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       444600 241 -   3636681 AACTTGTTTTTTCTTTTGCTTAGATGTGTTTGACTAAAGCTTCCTTTTTCACAGGTTCATttttt-ccaacattttatt--atg-----aaa----aaaa--aatacagaaaagttgaaagagttttacagtgcgcacccacgtattgaccacctaagactgtgccgctggcgttatcccacattctttatcacagctctctccaccttttcgtgcctctattcatcca---tgagtccctgacatttttttt--cagtg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       426101 241 -   4457520 AACTTGTTTTTTCTTTTGCTTAGATGTGTTTGACTAAAGCTTCCTTTTTCACAGATTTATttttt-ccaacattttatt--atg-----aaa----aaaa--tatacagaaaatttgaaagaattttacattgcgcacccacgtattgaccacctaagactgtgccactggcattatcccacattctttatcacagctctctccactttttcgtgcctctattcatcca---tcagtccctcacatttttttt--cagtg
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             383864 228 +   3845361 GACTTGTATTTTCTTTGATTTCGA--------GTTGGAATTATCTTTTCTCCTAAATTGttgttt-tcaactttttttttaatg-----aaaagttaaaa--catacagggaagttgaaagaattttagagcaagagcc-----acttacctt----gactgcaccactggcatttactctcccactttatcaccgct-tctccacctctttgc-cctctgtacatccaggctcctccccctactctgcccca--ca---
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13454645 245 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=599378.000000
s hg38.chr15_KI270851v1_alt    173542 79 +    263054 tttccaaggagacctctggacacttgcttctcaacattgcagcgtgtaggccctcagcaggagttcaGAAGTGCACATT
s panTro5.chr15              73746297 79 -  83230942 tttccaaggagacctctggacacttgcttctcaacgttgcagcgtgtaggccctcagcaggagttcaGAAGTGCACATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74049344 79 -  99763055 tttccaaggagacctctggacacttgcttctcaacgttgcagcgtgtaggccctcagcaggagttcaGAAGTGCACATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        98672 79 -    281578 tttccaaggagacctctggacacttgcttctcaacattgcagcgtgtaggccctcagcaggagttcaGAAGTGCACATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70957154 79 + 121039945 tttccaaagagacccctggacacttgcttctcagcattgcagcatgtaggccctcagcaggagttcaGAAGTACACATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164264049 75 - 169600520 tttccaaggagacctctggaca----cttctcagcattgcagcgtgtaggccctcagcaggagttcaGAGGTGCACATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165584922 75 - 171882078 tttccaaggagacctctggaca----cttctcaacattgcagcgtgtaggccctcagcaggagttcaGAGGTGCACATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       431433 79 +   2379783 tttccaaggagacctctggacacttgcttctcaacattgcagcgtgtaggccctcagcaggagttcaGAGGTGCACATT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       397865 79 +   4116138 tttccaaggagacctctggacacttgcttctcaacattgcagcgtgtaggccctcagcaggagttcaGAGGTGCACATT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53830202 79 +  58131712 tttccaaggagacctctggacacttgcttctcaacattgcagcgtgtaggccctcagcaggagttcaGAGGTGCACATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       444841 79 -   3636681 tttccaaggagacctctggacacttgcttctcaacattgcagcgtgtaggccctcagcaggagttcaGAGGTGCACATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       426342 79 -   4457520 tttccaaggagacctctggacacttgcttctcaacattgcagcatgtaggccctcagcaggagttcaGAGGTGCACATT
i colAng1.NW_012115278v1    C 0 C 0
s proCoq1.NW_012148396v1     13454890 79 +  16154928 tttccaaggagacttccagacacttgcccctcaacactgcagtgtgcaggtcctcagcaggagttcaGAAGGGCATACT
i proCoq1.NW_012148396v1    I 245 I 29
s otoGar3.GL873689             384092 79 +   3845361 tgtccaaggagacttccggacacttgcccctcaacactgtagcctgcaggtcctcagcaggggttcaGCACTGCACACT
i otoGar3.GL873689          C 0 I 1
e micMur3.chr9              116224213 14849 + 116334831 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=192952.000000
s hg38.chr15_KI270851v1_alt    173621 29 +    263054 TCACAGTGAA-CCTTCTGAGAGTGTTGACA
s panTro5.chr15              73746376 29 -  83230942 TCACAGTGAA-CCTTCTGAGAGTGTTGACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74049423 29 -  99763055 TCACAGTGAA-CCTTCTGAGAGTGTTGACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        98751 29 -    281578 TCACAGTGAA-CCTTCTGAGAGTGTTGACA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70957233 29 + 121039945 TCACAGTGAA-CCTTCTGAGAGTGTTGACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164264124 29 - 169600520 TCACAGTGAA-CCTTCTGGGAGTGTTGACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165584997 29 - 171882078 TCACAGTGAA-CCTTCTGGGAGTGTTGACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       431512 29 +   2379783 TCACAGTGAA-CCTTCTGGGAGTGTTGACA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       397944 29 +   4116138 TCACAGTGAA-CCTTCTGGGAGTGTTGACA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53830281 29 +  58131712 TCACAGTGAA-CCTTCTGGGAGTGTTGACA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       444920 29 -   3636681 TCACAGTGAA-CCTTCTGGGAGTGTTGACA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       426421 29 -   4457520 TCACACTGAA-CCTTCTGGGAGTGTTGACA
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             384172 30 +   3845361 CCTCAGTGGGCCCTTCTGGGAGTTTTGACA
i otoGar3.GL873689          I 1 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13454969 29 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=181719.000000
s hg38.chr15_KI270851v1_alt    173650 26 +    263054 GATCACAGCTTTTCTTTTTGTCT-AAT
s panTro5.chr15              73746405 26 -  83230942 GATCACAGCTTTTCTTTTTGTCT-AAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74049452 26 -  99763055 GATCACAGCTTTTCTTTTTGTCT-AAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        98780 26 -    281578 GATCACAGCTTTTCTTTTTGTCT-AAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70957262 21 + 121039945 GCTGACAGCTTTTCTTTTTGT------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164264153 26 - 169600520 GATCACAGCTTTTCTTTTTGTCT-AAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165585026 26 - 171882078 GATCACAGCTTTTCTTTTTGTCT-AAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       431541 26 +   2379783 GATCACAGCTTTTCTTTTTGTCT-AAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       397973 26 +   4116138 GATCACAGCTTTTCTTTTTGTCT-AAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53830310 26 +  58131712 GATCACAGCTTTTCTTTTTGTCT-AAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       444949 26 -   3636681 GATCACAGCTTTTCTTTTTGTCT-AAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       426450 26 -   4457520 GATCACAGCTTTTCTTTTTGTCT-AAC
i colAng1.NW_012115278v1    C 0 C 0
s proCoq1.NW_012148396v1     13454998 26 +  16154928 GATCATGGCTTTTCTTTTTGTCT-AAC
i proCoq1.NW_012148396v1    I 29 C 0
s otoGar3.GL873689             384202 27 +   3845361 GATCATAGCTTTTTTTTTTGtctcaac
i otoGar3.GL873689          C 0 I 184
e micMur3.chr9              116224213 14849 + 116334831 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=264185.000000
s hg38.chr15_KI270851v1_alt    173676 40 +    263054 GAAAAGGGCTTGCTGGCCATTGGGTGTTGTAATCTCT------TAG
s panTro5.chr15              73746431 40 -  83230942 GAAAAGGGCTTGCTGGCCATTGGGTGTTGTAATCTTT------TAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74049478 40 -  99763055 GAAAAGGGCTTGCTGGCCATTGGGTGTTGTAATCTTT------TAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        98806 40 -    281578 AAAAAGGGCTTGCTGGCCTTTGGGTGTTGTAATCTTT------TAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70957283 28 + 121039945 ------------CTGGCCATTGGGTGTTGTAATCTCT------TAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164264179 40 - 169600520 GAAAAGGGCTTGCTGGCCATTGGGTGTTGTAATCTCT------TAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165585052 40 - 171882078 GAAAAGGGCTTGCTGGCCATTGGGTGTTGTAATCTCT------TAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       431567 37 +   2379783 GAAAA-GGCTTGCTGGCCAT--GGTGTTGTAATCTCT------TAG
i macNem1.NW_012011934v1    C 0 I 16911
s cerAty1.NW_012001462v1       397999 40 +   4116138 GAAAAGGGCTTGCTGGCCATTGGGTGTTGTAATCTCT------TAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53830336 40 +  58131712 GAAAAGGGCTTGCTGGCTATTGGGTGTTGTAATCTCT------TAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       444975 40 -   3636681 GAAAAGGGCTTGCTGGCCATTGGGTGTTGTAATCTCT------TAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       426476 40 -   4457520 GAAAAGGGCTTGCTGGCCATTGGGTGTTGTAATGTCT------TAG
i colAng1.NW_012115278v1    C 0 C 0
s proCoq1.NW_012148396v1     13455024 46 +  16154928 AGAAAGGATTTGCTGGGCATACGGTGCTGTAATCTCTTACGAGTAG
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             384413 40 +   3845361 GAAAGGGGTTTGCTGGGCATGTGGTGTTGTAATCTCT------TGG
i otoGar3.GL873689          I 184 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=1085162.000000
s hg38.chr15_KI270851v1_alt    173716 211 +    263054 --------------GAGAGTAAACTCTTAGTAAC---TATCTAAATCATTCTTAATGATTCTCTCTGCTGTATAAA-TAGGTCTGGGAGGACCCTTTCTGACATTCTTGTTGGCATAGGTTttagcttaaggtgttgtaaatgctgtttatcaagatgatgaagttcccatttgttgctattttctgagaatt------tttatcattcacgag-----tattgaattttgtcatttgct
s panTro5.chr15              73746471 211 -  83230942 --------------GAGAGTAAACTCTTAGTAAC---TATCTAAATCATTCTTAATGATTCTCTCTGCCGTGTAAA-TAGGTCTGGGAGGACCCTTTCTGACATTGTTTTTGGCATAGGTTttagcttaaggtgttgtaaatgctgtttatcaagatgatgaagttcccgtttgttgctattttctgagaatt------tttatcattcatgag-----tattgaattttgtcatttgct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74049518 211 -  99763055 --------------GAGAGTAAACTCTTAGTAAC---TATCTAAATCATTCTTAATGATTCTCTCTGCCGTGTAAA-TAGGTCTGGGAGGACCCTTTCTGACATTGTTTTTGGCATAGGTTttagcttaaggtgttgtaaatgctgtttatcaagatgatgaagttcccgtttgttgctattttctgagaatt------tttatcattcatgag-----tattgaattttgtcatttgct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        98846 211 -    281578 --------------GAGAGTAAACTCTTAGTAAC---TATCTAAGTCATTCTTAATGATTCTCTCTGCCATGTAAA-TAGGTCTGGGAGGACCCTTTCTGACATTGTTTTTGGCATAGGTTttagcttaaggtgttgtaaatgctgtttatcaagatgttgaagttcccgtttgttgctattttctgagaatt------tttatcattcatgag-----tattgaattttgtcatttgct
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70957311 208 + 121039945 --------------GAGAGTAAACTCTTATTAAC---TATCTAAATCATTCTTAATGATTCTTTCTGCTGTGTAAA-TAGGTCTGGGAGGACCCTTTCTGACGTtg---ttagcataggttttagcttaaggtattgtaaatgctatttatcaagatgatgaagttcccatttgttgcaattttctgagaatt------tttatcattcatgag-----tattgaattttgtcatttgct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164264219 209 - 169600520 --------------GACAGTAAACTCTTAGTAAC---TATCTAAATCATTCTTAATGATTCACTCTGCAGTGTAAAGTAGGTCTAGGAGGACCCTTTCTGACATTGCTGTTagcataagttttagcttaaggttttgtaaatgctgtttatcaaga---tgaagttcccatttattgctattttctgagaatt------tttattatgtatgag-----tattgaattttgttatttgct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165585092 209 - 171882078 --------------GACAGTAAACTCTTAGTAAC---TATCTAAATCATTCTTAATGATTCACTCTGCAGTGTAAAGTAGGTCTAGGAGGACCCTTTCTGACGTTGCTGTTagcataagttttagcttaaggttttgtaaatgctgtttatcaaga---tgaagttcccatttattgctattttctgagaatt------tttattatgtatgag-----tattgaattttgttatttgct
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       398039 209 +   4116138 --------------GACAGTAAACTCTTAGTGAC---TATCTAAATCATTCTTAATGATTCACTCTGCAGTGTAAAGTAGGTCTAGGAGGACCCTTTCTGACATTGCTGTTagcataagttttagcttacggttttgtaaatgctgtttatcagga---tgaagttcccatttattgctattttctgagaatt------tttattatgcatgag-----tattgaattttgttatttgct
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53830376 209 +  58131712 --------------GACAGTAAACTCTTAGTGAC---TATCTAAATCATTCTTAATGATTCACTCTGCAGTGTAAAGTAGGTCTAGGAGGACCCTTTCTGACATTGCTGTTagcataagttttagcttaaggttttgtaaatgctgtttatcaaga---tgaagttcccatttattgctattttctgagaatt------tttattatgcatgag-----tattgaattttgttattggct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       445015 209 -   3636681 --------------GACAGTAAACTCTTAGTGAC---TATCTAAATCATTCTTAATGATTCACTCTGCAGTGTAAAGTAGGTCTAGGAGGACCCTTTCTGACATTGCTGTTagcataagttttagcttaaggttttgtaaatgctgtttatcagga---tgaagttcccatttattgctattttctgagaatt------tttattatgtatgag-----tattgaattttgttatttgct
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       426516 209 -   4457520 --------------GACAGTAAACTCTTAGTGAC---TATCTAAATCATTCTTAATGATTCATTCTGCAGTGTAAAGTAGGTCTAGGAGGACCCTTTCTGACATTGTTGTTagcataagttttagcttaaggttttgtaaatgctgtttatcaaga---tgaagttcccatttattgctattttctgagaatt------tttattatgcatgag-----tattgaattttgttatttgct
i colAng1.NW_012115278v1    C 0 C 0
s proCoq1.NW_012148396v1     13455070 217 +  16154928 TGTTGGAATCTTAGTAGAATCTACTCTAAGTGATTATTATCTAAATCATTCTCAGTGCTTCTCTCTGCTGTGTAAGCTGAATCTAAGGGGACCTTTTCTGACATCACTGATAGCACAGGttt------------ttgtaaatgctatttatcaaggtgaggaagttcccatttgttcttactttctgagagtt------tttattgtgaatgag-----tgttgaattttgtcaagtgct
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             384453 199 +   3845361 TGTTGGATTCT-------------GCTAAGTGACTGTTATCTCAG------TCGGTGATCCTCTCTGCTGAGTGAGGTAAGGCTCAGAGGACCTTTTCTGGTGTCACTGTTAGCATAGGTCC------------TTGCACATGGTATTTATCAAGGGAACGAGGCTCCCATTTGTTCTCAC--TCTGAGTGttcttttgttttttgagatagagttctctgtcacatttggt--------
i otoGar3.GL873689          C 0 I 38
e micMur3.chr9              116224213 14849 + 116334831 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=117887.000000
s hg38.chr15_KI270851v1_alt    173927 24 +    263054 ttttctaaatcaattgatatgtaa
s panTro5.chr15              73746682 24 -  83230942 ttttctaaatcaattgatatgtaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74049729 24 -  99763055 ttttctaaatcaattgatatgtaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        99057 24 -    281578 ttttctaaatcaattgatatgtaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70957519 24 + 121039945 ttttctaaatcaactgatatgtaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164264428 24 - 169600520 ttttctaaatcaattgataggtaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165585301 24 - 171882078 ttttctaaatcaattgataggtaa
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       398248 24 +   4116138 ttttctaaatcaattgataggtaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53830585 24 +  58131712 ttttctaaatcaattgataggtaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       445224 24 -   3636681 ttttctaaatcatttgataggtaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       426725 24 -   4457520 ttttctaaatcaggtgataggtaa
i colAng1.NW_012115278v1    C 0 C 0
s proCoq1.NW_012148396v1     13455287 20 +  16154928 ttttctaaatcaactaattg----
i proCoq1.NW_012148396v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             384652 38 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=239567.000000
s hg38.chr15_KI270851v1_alt    173951 39 +    263054 ttatgtgatttttgttctttagtctattaatagggtggg
s panTro5.chr15              73746706 39 -  83230942 ttatgtgatttttgttctttagcctattaatagggtggg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74049753 39 -  99763055 ttatgtgatttttgttctttagcctattaatagggtggg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        99081 39 -    281578 ttatgtgatttttgttctttagcctattaatagggtggg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70957543 39 + 121039945 ttatgtgatttttgttctttagcctattaatagggtggg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164264452 39 - 169600520 tcatgcgatttttgttctttagcctattaatagggtggg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165585325 39 - 171882078 tcatgcgatttttgttctttagcctattaatagggtggg
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       398272 39 +   4116138 tcatgtgatttttgttctttagcctattaatagggtggg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53830609 39 +  58131712 tcatgcgatttttgttctttagcctattaatagggtggg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       445248 39 -   3636681 tcatgcgatttttgttctttagcctattaatagggtggg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       426749 39 -   4457520 tcatgcgatttttgttctttagcctattaatagggtggg
i colAng1.NW_012115278v1    C 0 C 0
s proCoq1.NW_012148396v1     13455307 39 +  16154928 tcatgcagtttttgttgtttagcctgttaataaggtggg
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             384690 39 +   3845361 tcaagtgatcttcttaccttagcctcccaagtagctggg
i otoGar3.GL873689          I 38 I 780
e micMur3.chr9              116224213 14849 + 116334831 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=551369.000000
s hg38.chr15_KI270851v1_alt    173990 106 +    263054 ttac----attgatatttgactgttgaaccagctttgcattcctggaatgaaactacttggcgatgatgtggaattctttttatatattgtttacttctacttgctaata
s panTro5.chr15              73746745 106 -  83230942 ttac----attgatttttgactgttgaacccactttacattcctggaatgaaactacttggcaatgatgtggaattctttttatatattgtttaattctacttgctaata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74049792 106 -  99763055 ttac----attgatttttgactgttgaacccactttacattcctggaatgaaactacttggcaatgatgtggaattctttttatatattgtttaattctacttgctaata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        99120 106 -    281578 ttac----attgatttttgactgttgaacccactttacattcctggaatgaaactacttggcaatgatgtggaattctttttatatattgtttaattctacttgctaata
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70957582 106 + 121039945 ttat----gttgacttttgactgttgaaccagctttgcattcctggaatgaaactacttggcgatgatgtggaattctttttatatattgtttagttctacttgctaata
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164264491 106 - 169600520 ttac----attgatttttgactgttgaaccagctttgcattcctgaaatgaaactacttggcgatgatgtggaattctttttatattttgtttaattttacttgcttgta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165585364 106 - 171882078 ttac----attgatttttgactgttgaaccagctttgcattcctgaaatgaaactacttggcgatgatgtggaattctttttatattttgtttaattttacttgcttgta
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       398311 106 +   4116138 ttac----attgatttttgactgttgaaccagctttgcattcctgaaatgaaactacttggtgatgatgtgaaattctttttatattttgtttaattttacttgcttgta
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53830648 105 +  58131712 ttac----attgctttttgactgttgaaccagctttgcattcctgaaatgaaactacttggcgatgatttgaaattctttttatatattgtttaa-tttacttgcttgta
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       445287 104 -   3636681 ttac----attgatttttgactgttgaaccaactt--cattcctggaatgaaactacttggtgatgatgtgaaattctttttatattttgtttaattttacttgcttgta
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       426788 106 -   4457520 ttac----attgatttttgactgttgaaccagctttgcattcctgaaatgaaactacttggcaatgatgtggaattctttttatatattgtttaattttacttgcttgta
i colAng1.NW_012115278v1    C 0 C 0
s proCoq1.NW_012148396v1     13455346 109 +  16154928 ttacatcgattgatttttgactgttgaaccagctttgcatccctggaat-aaaccagttggtgatgatgtctacttctttttatatattgcttaattctacttgctaata
i proCoq1.NW_012148396v1    C 0 I 15489
e micMur3.chr9              116224213 14849 + 116334831 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             384729 780 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=240841.000000
s hg38.chr15_KI270851v1_alt    174096 130 +    263054 attcactgaatatttttgtgtctatatatatattaag-----gtatattgttctgtagtttgtactgtctttaggtacggtacctaatattagcttcttaaaatgctaatattagc-tctaatattagcttcttaa
s panTro5.chr15              73746851 123 -  83230942 attcgctgtatatttttgtgtgtctctata-------------tatattgttctgtagtttgtactgtctttaggtacagtacctaatattagcttcttaaaatgTTAATATTAGCTTCTAATATTAGCTTCTTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74049898 123 -  99763055 attcgctgtatatttttgtgtctctctcta-------------tatattgttctgtagtttgtactgtctttaggtacagtacctaatattagcttcttaaaatgTTAATATTAGCTTCTAATATTAGCTTCTTAA
i panPan2.chr15             C 0 I 15176
s gorGor5.CYUI01000141v1        99226 119 -    281578 attcgctgtatatttttgtg----tctata-------------tatattgttctgtactttgtactgtctttaggtacagtacctaatattagcttcttaaaatgttaatattagcttctaatattagcttcttaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70957688 105 + 121039945 attaactgaatatttttgcctctatatatatagagagagagagtatattgttctgtagtttgcactgtctttaggttcgatgtc------------------atgctaatattagc-------------ttcttaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164264597  80 - 169600520 aataattgaatatttttgtatgtctctgtatatataaag----tatattgttctgtagtttgtactgtcttttggtttgatatc----------------------------------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165585470  80 - 171882078 aataattgaatatttttgtatgtctctgtatatataaag----tatattgttctgtagtttgtactgtctttaggtttgatatc----------------------------------------------------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       398417  80 +   4116138 aataactgaatatttttgtgtgtctctgtatatataaag----tatattgttctgtagtttgtactgtctttaggttcgatatc----------------------------------------------------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53830753  80 +  58131712 aatcactgaatatttttgtgtgtctctgtatatataaag----tatattgttctgtagtttgtactgtctttaggttcgatatc----------------------------------------------------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       445391  80 -   3636681 aataactgaatatttttgtgtgtctctgtatatataaag----tatattgttctgtagtttgtactgtctttaggttcgatatc----------------------------------------------------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       426894  80 -   4457520 attctctgaatatttttgtgtgtctctgtatatataaag----tatattgttctgtagtttgtactgtctttaagttcgatatc----------------------------------------------------
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             384729 780 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=1260911.000000
s hg38.chr15_KI270851v1_alt    174226 418 +    263054 aa-------------------tgctaatattggc---------------tctaatattagcttcttaaaa-----tgctaatattggc---------------tctaatattagcttcttaat-----------------------------------------atgaattgggaagtttttccttttctagtttccagaagagattgttttgagtctgtgttaattcttttttaatgtttgatggaattatccagtgagttcatttggatctggtaatttctttttttttttgggattctttgaattatgaattcagttttcttgatagtggtagagctattcaaatgatctattttatatttggtgagttgtggtaatttgcattatttgaggaataagtctattttgcccaagttgtcaaagttatgtgtgtagagttgttcctagtaattcctaattatcttttttcatatctttagagcctgtttcatcactaatgttgggtaattta
s panTro5.chr15              73746974 506 -  83230942 TATTAGCTTCTTAATATTAGCTTCTAATATTAGCTTCTTAATATTAGCTTCTAATATTAGCTTCTTAATATTAGCTTCTAATATTAGCTTCTTAATATTAGCTTCTAATATTAGCTTCTTAATATTAGCTTCTAATATTAGCTTCTtaatattagcttcttaaaatgaattgggaagtttttcctcttctagtttccagaagagattgttttgagtccgtgttaattcttttttaatgtttgatggaattatccagtgagttcatttgggtctggtaatttcttttttttc---gggttctttgaattatgaattcagttttcttgatagtggtagggctattcaaatgatctattttatatttggtgagttgtggtaatttgtattatttgaggaataagtccattttgcccaagttgtcaaagttacatgtgtagagttgttcctagtaattcctaattatcttttttggtatctttagagtccgtttcatcactaat----ggtaattta
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        99345 426 -    281578 --------------tattagcttctaatattagc--------------ttctaatattagcttcttaatattagcttctaatattagctt-------------cttaatattagcttcttaaa-----------------------------------------atgaattgggaagtttttcctcttctagtttccagaagagattgttttgagtccgtgttaattcttttttaatgtttgatggaattatccagtgagttcatttgggtctggtaatttcttttttttc---ggattctttgaattatgaattcagctttcttgatagtgatagggctattcaaatgatcgattttatatttggtgagttgtggtaatttgtattatttgaggaataagtccattttgcccaagttgtcaaattta-atgtgtagagttgttcctagtaattcctaattatcttttttggtatctttagagtccgtttcatcactaatgtt-ggtaattta
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70957793 346 + 121039945 -------------------------------------------------------------------------------------------------------------------------------------------------------------------aatgaattgggaagtttttcctcttctagtttccagaagagattgttttgagtctgtgttaattcttttttaatgtttgatggaattttccagtgagttcatttgggtctggtaatttcttttttttg---ggattctttgaattatgaattcagttttcttgatggtggtagggctattcaaatgatctatttcatatttgctgagttgtggtaatttgtattatttgaggaataagtctattttgcccaagttgtcaaaattatgtgtgtagagttgttcctagtaattcctaattatcttttttggtatctttagagcccatttcatcactaatgtt-ggtaattta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164264677 367 - 169600520 -----------------------------------------------------------------------------------------------------atgctaatattagcttcttaaa-----------------------------------------atgaattgggaggtttttcctcttctagtttctggaagagattgttttcagtctgtattaattattttttaatgtttgatggaattatccagtgaattcatttgagtctggtaatttctttttttgg---ggattcttagaattaggaattcagttttcttgagagtggtagggctgttcaaataatctattttatatttggtgagttgtggtaatttgtattatttgaggaataagtccattttgcccaagatgtcaaagttgcgtgtgtagagttgtacctagtaattcttaattatcttttttgatatcttcagagcctgtttcaacactaatgtt-ggtaattta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165585550 367 - 171882078 -----------------------------------------------------------------------------------------------------atgctaatattagtttcttaaa-----------------------------------------atgaattgggaggtttttcctcttctagtttctggaagagattgttttcagtctgtattaattattttttaatgtttgatggaattatccagtgaattcatttgagtctggtaatttctttttttgg---ggattcttagaattaggaattcagttttcttgagagtggtagggctgttcagataatctattttatatttggtgagttgtggtaatttgtattatttgaggaatgagtccattttgcccaagatgtcaaagttgcgtgtgtagagttgtacctagtaattcttaattatcttttttgatatcttcagagcctgtttcaacactaatgtt-ggtaattta
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       398497 367 +   4116138 -----------------------------------------------------------------------------------------------------atgctaatattagcttcttaaa-----------------------------------------atgaattgggaggtttttcctcttctagtttctggaagagattgttttcagtctgtattaattattttttaatgtttgatggaattatccagtgaattcatttgagtctggtaatttctttttttgg---ggattcttagaattaggcattcagttttcttgagagtggtagggctgttcaaataatctattttatatttggtgagttgtggtaatttgtattatttgaggaataagtccattttgcccaagatgtcaaagttgcgtgtgtagagttgtacctagtaattcataattatcttttttgatatcttcagagcctgtttcaacactaatgtt-ggtaattta
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53830833 366 +  58131712 -----------------------------------------------------------------------------------------------------atgctaatattagcttcttaaa-----------------------------------------atgaattgggaggtttttcctcttctagtttctggaagagattgttttcagtctgtattaattattttttaatgtttgatggaattatccagtgaattcatttgagtctggtaatttc-ttttttgg---ggattcttagaattaggaattcagttttcttgagagtggtagggctgttcaaataatctattttatatttggtgagttgtggtaatttgtattatttgaggaataagtccattttgcccaagatgtcaaagttacatgtgtagagttgtacctagtaattcttaattatcttttttgatatcttcagagcctgtttcaacactaatgtt-ggtaattta
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       445471 367 -   3636681 -----------------------------------------------------------------------------------------------------atgctaatattagcttcttaaa-----------------------------------------atgaattgggaggtttttcctcttctagtttctggaagagattgttttcagtctgtattaattattttttaatgcttgatggaattatccagtgaattcatttgagtatggtaatttctttttttgg---gaattcttagaattaggaattcagttttcttgagagtggtagggctgttcaaataatctattttatatttggtgagttgtggttatttgtattatttgaggaataagtccattttgcccaagatgtcaaagttgcgtgtgtagagttgtacctagtaattcgtaattatcttttttgatatcttcagagcctgtttcaatactaatgtt-ggtaattta
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       426974 367 -   4457520 -----------------------------------------------------------------------------------------------------atgctaatattagtttcttaaa-----------------------------------------atgaattgggaggtttttcctcttctagtttccggaagagattgttttcagtctgtgttaattattttttaatgtttgatggaattatccagtcaattcatttgagtctggtaatttctttttttgg---ggattcttagaattacaaattcagttttcttgagagtggtagggctattcaaataatatattttatatttggtgagttgtggtaatttgtattatttgaggaataagtccattttgcccaagatgtcaaagttacgtgtgtagagttgtacctagtaattcttcattatctcttttgatatcttcagagcctgtttcaacactaatgtt-ggtaattta
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             384729 780 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74050021 15176 -  99763055 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=1129107.000000
s hg38.chr15_KI270851v1_alt    174644 305 +    263054 tgtc---------ttttttttttttttgtcagtcttgcttagagaggtgtgtcagttttattgatcttttcaaagaaccagctttttgctttactgtttattgtttttctgttttcac----------tttgtttctactcttaccttaattatttcttcctttctgcttatttttgggttgattttgctattttt-aattttcttttaggttgtcaacgtgggcacttatattattgattt----gtttccaagtttctaatgtaccattcatttagtgctgtaaatttgtctctc---gtcac----ccactgtagctctttcccatacatttt
s panTro5.chr15              73747480 302 -  83230942 tgtc------tttttttttttttttttgtcagtcttgcttagagaggtttgtcagttttattgatcttttcaaagaaccagctttttgctttactgtttattggttttctgtttacac----------tttgtttctactcttcccttaattatttcttcttttctgcttacttttgggttgattttgctattttt---ctttcttttaggttgtcgaggcgggcacttatattattgattt----gtttccaagtttctaatgtaccatttatttagtgctgtaaatt----tctc---atcac----ccactgtagctctttcccatgcatttt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        99771 302 -    281578 tgtc------tttctttttttttttttgtcagtcttgcttagagaggtttgtcagttttattgatcttttcaaagaagcagctttttgctttactgtttattggttttctgttttcac----------tttgtttctactctttccttaattatttcttcctttctgcttacttttgggttgattttgctattttt--tgtttcttttaggttgtcgagg-ggacacttatattattgattt----gtttccaagtttctaatgtaccattcatttagtgctgtaaatt----tctc---atcac----ccactgtagctctttcccatgcatttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70958139 304 + 121039945 tgtc--tgcttttttttttttttttttgtcagtcttgctt----aggtgtgtcagttttattgatcttttcaaagaaccagctttttgctttactgtttattgtttttctgttttcac----------tttgtttctactcttagcttaattatttcttactttctgcttacttttgggttgattttgctattttt---ttttcttttagattgtcgaggtgggcacttacattattaattg----gtttccaagtttctaatgtgccattcatttagtgctgtaaatt--tctctc---atcac----ccactgtagctctttcccatacatttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164265044 306 - 169600520 tgtc-------tttttttttttttttggtcagtcttgcttagagaggtgtgtcagttttattgatcttttcaaagatccagctttttgctttactgtttattgtttttctgttttcactttg-tttcttttgtttctactcttaccttaattatctcttcctttctacttacttttgggtttattttgcta-tttt----tttcttttaggttgctgagg-gggcacttatattattgattt----gtttccaagtttctaatgtaccatttatttagtgctgtaaatt----tctc----tcac----ccactgtagctctttcccatacatttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165585917 306 - 171882078 tgtc-------tttttttttttttttggtcagtcttgcttagagaggtgtgtcagttttattgatcttttcaaagatccagctttttgctttactgtttattgtttttctgttttcactttg-tttcttttgtttctactcttaccttaattatctcttcctttctacttacttttgggtttattttgcta-tttt----tttcttttaggttgctgagg-gggcacttatattattgattt----gtttccaagtttctaatgtaccatttatttagtgctgtaaatt----tctc----tcac----ccactgtagctctttcccatacatttt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       398864 314 +   4116138 tgtcttttttttttttttttttttttggtcagtcttgcttagagaggtgtgtcagttttattgatcttttcaaagatccagctttttgctttactgtttattgtttttctgttttcactttg-tttcttttgtttctactcttaccttaattatttcttcctttctacttacttttgggtttattttgctattttt----tttcttttaggttgctgagg-gggcacttatattattgattt----gtttccaagtttctaatgtaccatttatttagtgctgtaaatt----tctc----tcac----ccactgtagctctttcccatacatttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53831199 300 +  58131712 tgtc---------tttttttttttttggtcagtcttgcttagagaggtgtgtcagttttattgatcttttcagagatccagctttttgctttactgtttattgtttttctgttttcactttg-tttcttttgtttctact-----cttaattatttcttcctttctacttacttttgggtttattttgctattttt----tttcttttaggttgctgagg-gggtacttatattattgattt----gtttccaagtttctaatgtaccatttgtttagtgctgtaaatt----tctc----tcac----ccactgtagctctttcccatacatttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       445838 312 -   3636681 tgtc--ttttttttttttttttttttggtcagtcttgcttagagaggtgtgtcagttttattgatcttttcaaagatccagctttttgctttactgtttattgtttttctgttttcactttg-tttcttttgtttctactcttaccttaattatttcttcctttctgcttacttttgggtttattttgctattttt----tttcttttaggttgctgagg-gggcacttatattattgattt----gtttccaagtttctaatgtaccatttatttagtgctgtaaatt----tctc----tcac----ccactgtagctctttcccatacatttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       427341 282 -   4457520 tgtc-tgtttttttttttttttttttggtcagtcttgcttagagagatgtgtcagtgttattgatcttttcagag-------------------------------ttctgttttcactttg-tttcttttgtttctactcttaccttaattatttcttcctttc----tacttttgggtttattttgctattttt----tttcttttaggttgttgagg-gggcacttatattattgattt----gtttccaagtttctaatgtgccatttatttagtgctgtaaatt----tctctctgtcac----ccactgtagctctttcccgtacatttt
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             385509 307 +   3845361 catc--gCCTGTtctcttttttctttgctcactcttgctt--agaggtgtgtcagttttattgatatttttaaagaa-cagctttttccttcacttattttt--ctttatttttccattttgatcttccttgtttctgct-----cttcattacatcttcccttt---ttacttttgggtt-attttgct--ttttaaaaaaaatactaggtttttcaggtggggccttatattattgatttgaaagtttctacttttctgatgtacc---cgtttagggctataaagt----tctc----ttacatcactacttgagtattttcctacaCTTTtt
i otoGar3.GL873689          I 780 I 22272
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74050021 15176 -  99763055 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=5588724.000000
s hg38.chr15_KI270851v1_alt    174949 1494 +    263054 gatgtattgtacttgcattttctctcagttcacaatatattttaaaatttcccttgagactttctctttgatccatgggttatgtagaagtttattgtttagtttctgagagttaggcaattttcctgtaattgttctcttgttgacttcagatttgttcccattgtttgagggaacatatgctgtg-tgattttaatttcaaaaaatttgttaggtttgttttatgcctcaggatatgttctaacttagtatttgttttgtggatacttgaaaagattatgtattctgttattattggctggagtgttctataaattttgattggctctagttgatggatggtgatgttgcgttctatatcctggcagcttttctgtctcctaattttatcagctgtagagagagattttgaggtctccaactataaaagtataaatgtctttttctcctttcggttctattcattgtttttttgtttgtttggtgtctgcacgtttcgaattgctgtgtcttaatggtggattgaccaagttctcattttgtaatgttgccgttggttcctggtaattatc---tttttttttttttt----------------gagacggagtttcgctccttttgcccaggcaggagtgaagtggcatgatctcagctcactgcaacttccgaccctaccaggttcaagtgattctcctgcctcagcctcctgagaagctgggattataggcttctgccatcacacccagctaatttttgtatttttagtagagatggggttttgccatattggccaggctggtctcaaactcctga--------gatccacccaccttggcctcccaaagtgctaggagtacaggcgtgagccactgtgcccggccctcctggtaattatctttgttctgaagtttactttatttgttataaatatagccaactcctgctgtcctttcagtaatgtttgcatgatc----tttttttttctatacttctattttcagtttgcctgtttgaagtcactttcttatggacaacatatagttggatcatgttctctagtctactctcctag----tgtcttttaattgatgtatttagattgtttacatttaatttaatgtc---attgataaattgaggcttaacactgccattttgttttgcattttctatttcttctgtttttcattttttcggtttggttcttcctggctctctgtggtttacttgaccatttttagcattctatttcatctgtagtgttttagagtgtatctttttgtatagcttttttagtggcttttctaggtaatatattgcatacagattgagcatctgtaaacccaaaatccaaaatctgaaatgccccaaaattcgaaactttatggcactccagcatgacgcccccaaattgaaaattccattcataagtacttagcatgaactttgtttcatgcacaaaat------------------------------------------------------tactaagcatgctatataaaattaccttcaggctctgtgtataagtta------------------tatataaaa
s panTro5.chr15              73747782 1509 -  83230942 gatgtattgtacttgcattttctctcagttcagaatatattttaaaatttcccttgagacttcctctttgatccatggattatttagaagtttattgtttagtttctgagagttaggcaattttcctgtaattgttctcttgttgacttctaatttgtttccattgtttgagggaacatatgctgtg-tgattttaatttcaaaaaatttgttaggtttgttttatgcctcagaatatgttctaacttagtatttgttttgtggatgcttgaacagattatgtattctgctgttattggctggagtgttctgtaaattttgattggatccagttgattgatggtgatgttgaattctatatcctggcagcttttctgtcttctaattttatcagctgtagagagagactttgaggtctccaactataaaagtataaatgtctttttctcctttcagttctattcattgtttctttgtttgtttggtgtatgcacgttttgaattgctgcgtcttaatggtggattgaccaagttctcattttgtaatgttgccatctgttcctggtaattatc---tttttttttttttt----------tttcccgagacggagtttcgctccttttgcccaggcaggagtgaagtggcgcgatctcagctcactgcaacctccaagcccaccgggttcaagtgattcccctgcctcagcctcctgagtagctgggattataggcatctgccatcacacctagctactttttgtatttttagtagagatggggttttgccatgttggccaggctggtctcagactcctga--------gatccacccaccttggcctcccaaagtgctaggattacaggcgtgagccactgtgcccggccttcctggtaattatctttgctctgaagtttactttatttgatataaatgtagccaacttctgctgtcctttcagtaatgtttgcatgatc--tttttttttttctatacttctattttcagtttgcctgtttgaagtcactttcttatggacaacatatagttggatcatgttctctagtctgctctcctggtgtctgtcttttaattgatgcatttagactgtttacatttaatttaatgtcattattagtaaactgaggcttaacactgccattttgttttgtattttctatttcttctgtttttcattttttcggtttggttcttcctgtctctctgtggtttacttgaccatttttagcattctattttatctgtagtgttttagagtgtatctttttgtatagcttctttagtggcttttctaggtaatatgttacatacagattgagcatctctaaacccaaaatccaaaatctgaaatgccccaaaatttgaaactttttggcactccagcatgatgcccccaaattgaaaattccattcataagtacttagcacgaactttgtttcatgcacaaaat------------------------------------------------------tattaagcatgctgtataaaattaccttcaggctctgtgtataagtta------------------tatataaaa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       100073 1516 -    281578 gatgtattgtactttcattttctctcagttcagaatatattttaaaatttcccttgagacttcctctttgatccatggattatttagaagtttactgtttagtttctgagagttaggcaattttcctgtaattgttctcttgttgacttctaatttttttccattgtttgagggaacatatgctgtg-tgattttaatttcaaaaaatttgttaggtttgttttatgcctcagaatatgttctaacttagtatttgttttgtggatgcttgaacagattatgtattctgctgttattggctggagtgttctgtaaattttgattggatccagttgattgatggtgatgttgaattctatatcctggcagcttttctgtcttctaattttatcagctgtagagagagacttggaggtctctaactataaaagtataaatgtctttttctcctttcagttctattcattgtttctttgtttgtttggtgtatgcacgttttgaattgctgcatcttaatagtggattgaccaagttctcattttgtaatgttgccatctgttcctggtaattatc---tttttttttttttttttttttctttttttcgagacggagtttcgctccttttgcccaggcaggggtgaagtggcgcgatctcagctcactgcaacctccaaccccaccgggttcaagtgattctcctgcctcagcctcctgagtagctgggattataggcatctgccatcacacctagctactttttgtatttttagtagagatggggttttgccatgttggccaggctggtctcagactcctga--------gatccacccaccttggcctcccaaagtgctaggattacaggagtgagccactgtgcccggcctttctggtaattatctttgctctgaagtttactttatttgatataaatgtagccaacttctgctgtcctttcagtaatgtttgcatgatc--tttttttttttctatacttctattttcagtttgcctgtttgaagtcactttcttatggacaacatatagttggatcatgttctctagtctgctctcctggtgtctgtcttttaattgatgcatttagac-gtttacatttaatttaatgtcattattagtaaactgaggcttaacactgccattttgttttgtattttctatttcttctgtttttcattttttcggtttggttcttcctg--tctctgtggtttacttgaccatttttagcattctattttatctgtagtgttttagagtgtatctttttgtatagcttttttagtggcttttctaggtaatatgttacatacagattgagcatctctaaacccaaaatccaaaatctgaaatgccccaaaatttgaaactttttggcactccagcatgacgcccccaaattgaaaattccattcataagtacttagcacgaactttgtttcatgcacaaaat------------------------------------------------------tattaagcatgctctataaaattaccttcaggctccgtgtataagtta------------------tatataaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70958443 1490 + 121039945 gatgtattgtacttgcattt--tctcagtttagaatatattttaaaatttccctcgagacttcctctttgatccatgggttatgtagaagtttattgtttagtttctgagagttaggcaattttcctgtga----tctcttgctgacttctgatttctttctattgtctgagggaacgtatgctgtg-tgattttaatttcaaaaaaattgttaggtttgttttatgcctcagattgtgttctaacttagtatttgttttgtggatacttgaaaagattatgtattctg---ttattggccagagtgttctataaattttgattggatctagttgattgatggtgatgttgagttctatatcctggcagcttttctgtctccaaa---tatcagctgtagagagagattttgaggtctccaactataaaagtataaatgtctttttctcctttcagttctattcattgtttt----tttgtttggtgtatgcacgtttcgaattgctgcgtcctaatggtggatcgaccaagttctcattttgtaatgttgccatctgttcctggtaattatt---attattattttttt-------------ttcgagacggagttttgctccttttccccaggcaggagtgaagtggaacgatctcagctcactgcaacctccgaccccactgggttcaagtgattctcctgcctcagcctcctgagtagctgggattataggcatccgccatcacattcagctaatttttgtatttttagtagagatggggttttgccatgttggccaggctggtctcaaactcctga--------gatccacccgccttggcctcccaaagtgctaggattacaggcgtgagccactgtgcccggccctcctggtaattatctttgttctgaagtttactttatttgatataaatgtagccaacttctgctgtcctttcaataatgtttgcatgatcttttttttttttcctatacttctattttcagtttgcctgtttgaagtcactttcttatggacaacacgtagttggatcatgttctctagtctgctctcctggtgtctgtcttttaattgatgtatttagac--tttacattcaatttaatgtcattattggtaaactgaggcttaacactgccattttgttttgtgttttctatttcttctgtttttcattttttcggtttggttcttcctggctctctctggtttacttgaccatttttagcattctattttatctgtagtgttttagagcgtatctttttgtatatcttttttagtggcttttctaggtaatatattacatacagattgaccatctctaaacccaaaatccaaaatctgaaatgccccaaaattcaaaactttttggcactccagcatgatgcccccaaattggaaattccattcataaatgcttagcatgaactttgtttcatgcacaaaat------------------------------------------------------tattaagcatgctatataaaattaccttcaggctctgtgtataaggta------------------tatataaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164265350 1493 - 169600520 gatgtattgtatttgcattttctctcagttcagaatatattttaaaattttccttgagacttcctctttgatccatgggttatttagaagtttattgtttagtttctgagagttaggcaattttcctgtaattgttctcttgttgacttctaatttgtttccattgtttgagggaacataggctgtg-tgactttaatttcaaaaaatttgttaggtttgttttatgcctcagaatatgttctaacttagtatttgttttgtggatacttgaaaagattttgtattctgctgttactgactggagtgttgtataaattttgattggatctagttgattgatggtgatgttgagttctatatcctggcagtttttctgtctcctaattttatcagctgtagagggagattttgaggtctccaactat----------atgtctttttctcctttcagttctgttcattgtttt--tgtttgtttggtgtatacatgtttcgaattgct-cctcttaacggtggattgaccaagttcttattttataatgttgccatctgttcctggtaattatc---tttttttttttttt----------------gagacggagttttgctccttttgcccaggcaggagtgaagtggcgcgatctcagctcactgcaacgtctgaccccactgggttcaagtgattctcctgcctcagcctcctgagtagctggaattataggcatccgccgtcaggtccagctaatttttgtacttttagtagagatggggttttgccatgttgaccagtctggtctcaaactcctgagctcgggtgatccaccccccttggcctcccaaagtgctaggattacaggcgtgagccactgtgcctggccctactgataattatctttgctctgaagtttactttatttgatataaatgtagccaacttctgctgtcctttcagtaatgtttgcatgatc----tttctttttctatacttctgttttcagtttgcctgtttgaagtcactttcttatggacaacatgtagctgcatcatgttctctagtctactctgccagtgtctgtcttttaattgatgtatttagactgtttacatttaatttaatgtc---attggtaaattgaggcttaacactgccattttgtttggtattttctgtttcttctggttttcattttttcggttcggttcttcctgcctctctgtggtttacttgaccatttttagcattctattttatttatagtgttttagagtgtatctttttgtatagcttttttagtgacttttctaggtgatatattacatgcagattgagcatctctgaaccctaaatccaaaatctgaaatgcctcaaaatttgaaactttttggcaccccagcgtgatgcccccaagttgaaaattccatttgtaagtacttagcatgaactttgtttcatacaaaaaat------------------------------------------------------tattaagcattctatataaaattaccttcaggctctgtgtataaggta------------------tgtataaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165586223 1492 - 171882078 gatgtattgtacttgcattttctctcagttcagaatatattttaaaattttccttgagacttcctctttgatccatgggttatttagaagtttattgtttagtttctgagagttaggcaattttcctgtaattgttctcttgttgacttctaatttgtttccattgtttgagggaacataggctgtg-tgactttaatttcaaaaaatttgttaggtttgttttatgcctcagaatatgttctaacttagtatttgttttgtggatacttgaaaagattttgtattctgctgttactgactggagtgttgtataaattttgattggatctagttgattgatggtgatgttgagttctatatcctggcagtttttctgtctcctaattttatcagctgtagagggagattttgaggtctccaactat----------atgtctttttctcctttcagttctgttcattgtttt--tgtttgtttggtgtatacatgtttcgaattgct-cctcttaacggtggattgaccaagttcttattttataatgttgccatctgttcctggtaattat----tatttttttttttt----------------gagacggagttttgctccttttgcccaggcaggagtgaagtggcgcgatctcagctcactgcaacgtctgaccccactgggttcaagtgattctcctgcctcagcctcctgagtagctggaattataggcatccgccgtcaggtccagctaatttttgtacttttagtagagatggggttttgccatgttgaccagtctggtctcaaactcctgagctcgggtgatccaccccccttggcctcccaaagtgctaggattacaggcgtgagccactgtgcctggccctactgataattatctttgctctgaagttcactttatttgatataaatgtagccaacttctgctgtcctttcagtaatgtttgcatgatc----tttctttttctatacttctgttttcagtttgcctgtttgaagtcactttcttatggacaacatgtagctgcatcatgttctctagtctactctgccagtgtctgtcttttaattgatgtatttagactgtttacatttaatttaatgtc---attggtaaattgaggcttaacactgccattttgtttggtattttctgtttcttctggttttcattttttcggttcggttcttcctgcctctctgtggtttacttgaccatttttagcattctattttatttatagtgttttagagtgtatctttttgtatagcttttttagtgacttttctaggtgatatattacatgcagattgagcatctctgaaccctaaatccaaaatctgaaatgcctcaaaatttgaaactttttggcaccccagcgtgatgcccccaagttgaaaattccatttgtaagtacttagcatgaactttgtttcatacaaaaaat------------------------------------------------------tattaagcattctatataaaattaccttcaggctctgtgtataaggta------------------tgtataaaa
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       399178 1495 +   4116138 gatgtattgtacttgcattttctctcagttcagaatatattttaaaattttccttgagacttcctctttgatccatgggttatttagaagtttattgtttagtttctgagagttaggcaattttcctgtaattgttcttttgttgacttctaatttgtttccattgtttgagggaacataggctgtgttgactttaatttcaaaaaatttgttaggtttgttttatgcctcagaatatgttctaacttagtatttgttttgtggctacttgaaaagattttgtattctgctgttactgactggagtgttctataaattttgattggatctagttgattgatggtgatgttgagttctatatcctggcagtttttctgtctcctaattttatcagctgtagagggagattttgaggtctccaactat----------atgtctttttctcctttcagttctgttcattgtttt--tgtttgtttggtgtatacatgtttcgaattgctgcctcttaacggtggattgaccaagttcttattttataatgttaccatctgttcctggtaattatc---tttttttttttttt----------------gagacagagttttgctccttttgcccaggcaggagtgaagtggcacgatctcagctcactacaacgtctgacccccctgggttcaagtgattctcctgcctcagcctcctgagtagctggaattataggcatccgccatcaggtccagctaatttttgtatttttagtagagatggggttttgccatgttgaccagtctggtctcaaactcctgagctcgggtgatccacccccgttggcctcccaaagtgctaggattacaggcgtgagccactgtgcctggccctagtgataattttctttgctctgaagtttactttatttgatataaatgtaaccaacttctgctgtcctttcagtaatgtttgcatgatc----tttctttttctatacttctgttttcagtttgcctgtttgaagtcactttcttatggacaacatgtagctgcatcatgttctctagtctactctgccagtgtctgtcttttaattgatgtatttagactgtttacatttaatttaatgtc---attggtaaattgaggcttaacactgccattttgtttggtattttctgtttcttctgtttttcatttttttggttcggttcttcctggctctctgtggtttacttgaccatttttagcattctattttatctatagcgttttagagtgtatctttttgtatagcttttttagtgacttttctaggtgatatattacatgcagattaagcatctctgaaccctaaatccaaaatctgaaatgccccaaaatttgaaactttttggcaccccagcgtgatgcccccaagttgaaaattccattcataagtacttagcatgaactttgtttcatacaaaaaat------------------------------------------------------tattaagcattctatataaaattaccttcaggctctgtgtataaggta------------------tgtataaaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53831499 1487 +  58131712 gatgtattgtacttgcattttctctcagttcagaatatattttaaaattttccttgagacttcctctttgatccatgggttatttagaagtttattgttt----------agtt-ggcaattttcctgtaattgttcttttgttgacttctaatttatttccattgtttgagggaacataggctgtg-tgactttaatttcaaaaaatttgttaggtttgttttatgcctcagaatatgttctaacttagtatttgttttgtggatacttgaaaagattttgtattctgctgttattgactggagtgttctataaattttgattggatctagttgattgatggtgatgttgagttctatatcctggcagtttttctgtctcctaattttatcaactgtagagggagattttgaggtctccaactat----------atgtctttttctccttttagttctgttcattgtttt--tgtttgtttggtatatacatgtttcgaattgctgcgtcttaacggtggattgaccaagttcttattttataatgttgccatctgttcctggtaattatc---t-tttttttttttt----------------gagacggagttttgctccttttgcccaggcaggagtgaagtggcacgatctcagctcactgcaacctctgaccccaccgggttcaagtgatt-------------ctcctgagtagctggaattataggcatccgccatcaggtccagctaatttttgtatttttagtagagatggggttttgccatgttgaccagtctggtctcaaactcctgagctcgggtgatccacccaccttggcctcccaaagtgctaggattacaggcgtgagccactgtgcctggccctactgataattatctttgctctgaagtttactttatttgatataaatgtagccaacttctgctgtcctttcagtaatgtttgcatgatc----tttctttttctatacttctgttttcagtttgcctgtttgaagtcactttcttatggataacatgtagctgcatcatgttctctagtctactctgccagtgtctgtcttttaattgatgtatttagactgtttacatttaatttaatgtc---attggtaaattgaggcttaacactgccattttgtttggtattttctgtttcttctgtttttcattttttcggttcggttcttcctggctctctgtggtttacttgaccatttttagcattctattttatctatagtgttttagagtgtatctttttgtatagcttttttagtgacttttctaggtgatatattacatacagattgagcatctctgaaccctaaatccaaaatctgaaatgccccaaaatttgaaactttttggcaccccagcgtgatgcccccaagttgaaaattccattcataagtacttagcatgaactttgtttcatacaaaaaat------------------------------------------------------tattaagcattctatataaaattaccttcaggctctgtgtataaggtatacacatattaagcattctatataaaa
i chlSab2.chr26             C 0 I 37
s manLeu1.NW_012102332v1       446150 1535 -   3636681 gatgtattgtacttgcattttctctcagttcagaatatattttaaaattttccttgagacttcctctttgatccatgggttatttagaagtttagtttct-------gagagttaggcaattttcctgtaat-----tcttgttgacttctaatttgtttccattgtttgagggaacataggctgtgttgactttaatttcaaaaaatttgttaggtttgttttatgcctcagaatatgttctaacttagtatttgttttgtggatacttgaaaagattttgtattctgctgttactgactggagtgttctataaattttgattggatctagttgattgatggtgatgttgagttctatatcctggtggcttttctgtctcctaattttatcagctgtagagggagattttgaggtctccaactat----------atgtctttttctcctttcagttctgttcattgtttt--tgtttgtttggtgtatacatgtttcgaattgctgcctcttaacggtggattgaccaagttcttattttataatgttgccatctgttcctggtaattatc-----tttttttttttt----------------gagacagagttttgctccttttgcccaggcaggagtgaagtggcacgatctcagctcactgcaacgtctgaccccactgggttcaagtgattctcctgcctcagcctcctgagtagctggaattataggcatccgccatcaggtccagctaatttttgtatttttagtagagatggggttttgccgtgttgaccagtctggtctcaaactcctgagctcgggtgatccaccccccttggcctcccaaagtgctaggattacaggcgtgagccactgtgcctggccctagtgataattttctttgctctgaagtttactttatttgatataaatgtagccaacttctgctgtcctttcagtaatgtttgcatgatc----tttctttttctatacttctgttttcactttgcctgtttgaagtcactttcttgtggacaacatgtagctgcatcatgttctctagtctactctgccagtgtctgtcttttaattgatgtatttagactgtttacatttaatttaatgtc---attggtaaattgaggcttaacactgccattttgtttggtattttctgtttcttctgtttttcatttttttggttcggttcttcctggctctctgtggtttacttgaccatttttagcattctattttatctatagtgttttggagtgtatctttttgtatagcttttttagtgacttttctaggtgatatattacatgcagattaagcatctctgaaccctaaatccaaaatctgaaatgccccaaaatttgaaactttttggcaccccagcgtgatgcccccaagttgaaaattccattcataagtacttatcatgaactttgtttcatacaaaaaattattaagcattctatataaaattaccttcaggctctgtgtataaggtatacacatattaagcattctatataaaattaccttcaggctctgtgtataaggta------------------tatataaaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       427623 1498 -   4457520 gatgtattgtacttgcattttctctcagttcagaatgtattttaaaatttcccttgagacttcctctttgatgcatgggttatttagaagtttattgtttagtttctgagagttggacaattttcctgtaattgttctcttgttgacttctaatttgtttccattgtttgagggaacatatgctgtg-tgactttaatttcaaaaaatttgttaggtttgttttatgcctcagaatatgttctaacttagtatttgttttgtggatacttgaaaagattatgtattctgctgttattggctggagtgttctataaattttgattggatctagttgattgatggtgatgttgagttctatatcctggcagtttttctgtctcctaattttatcagctgtggagggagattttgaggtctccaactat----------atatctttttctcctttcagttctgttcattgtttt--tgtttgtttggtgtatgcatgtttcgaattgctgcatcttaacggtggattgaccaagttcttattttgtaatgttgccatctgttcctggtaattatcttttttttttttttttt----------------gagacggagttttgctgcttttgcccaggcaggagtgaagtggcgtgatctcagctcactgcaacctctgaccccactgggttcaagtgattctcctgcctcagcctcctgagtagctggaattataggcgtctgccatcaggcccagctaatttttgtatttttagtagagatggggttttgccatgttggctagtctgttctcaaactcctgagctcgggtgatccacccaccttggcctcccaaagtgctaggattacaggcgtgagccactgtgcccggccctactggtaattatctttgctctgaagtttactttatttgatataaatgtagccaacttctgctgtcctttcagt--tgtttgcctgatc----tttctttttctatacttctgttttcagtttgcctgtttgaagtcactttcttatggacaacatgtagctgcatcatgttctctagtctactctgccagtgtctgtcttttaattgatgtatttagactgtttacatttaatttaatgtcattattggtaaattgaggcttaacactgccattttgttctgtattttctgtttcttctgtttttcattttttcggttcggttcttcctggctctctgtgatttacttgaccatttttagcattctattttacctgtagtgttttagagtgtatctttttgtatagctttcttagtgacttttctaggtgatatattacatacagattgagcatctctgaaccctaaatccaaaatctgaaatgccccaaaatttgaaactttttggcaccccagcatgatgcccccaagttgaaaattccattcataagtacttagcatgaactttgtttcatacaaaaaat------------------------------------------------------tattaagcattctgtataaaattaccttcaggctctgtgtatacggta------------------tatataaaa
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             385816 22272 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74050021 15176 -  99763055 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=16704.000000
s hg38.chr15_KI270851v1_alt    176443 5 +    263054 cataa
s panTro5.chr15              73749291 5 -  83230942 cataa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       101589 5 -    281578 cataa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70959933 5 + 121039945 cataa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164266843 5 - 169600520 cataa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165587715 5 - 171882078 cataa
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       400673 5 +   4116138 cataa
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       447685 5 -   3636681 cataa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       429121 5 -   4457520 cataa
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             385816 22272 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74050021 15176 -  99763055 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e chlSab2.chr26              53832986 37 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=3603950.000000
s hg38.chr15_KI270851v1_alt    176448 948 +    263054 atgaatgtatttagacttgggtcctatccccaaaatatctcattatttatatgcagatattcctaaatctgataaaaatctgaaatttggaacacttgtgctcctgagcattttataagggacactcagcctgtgtatgtatgaacacttatcagattttacctgatgttgtcatttaccagcttcagggatatagaaactacctcccttgatgttcctttatgttcttctgttcataatatacttgccttaaatatttcatttacttacattgataaccacatatgacaatgttataatttttggttgaaccttcagacgtaatttagcaaagtcaagaggtgagggaaaagtctattgtatttatgcgttggtgtgcttgtcat-ctcctccttccagaagttccagggttttcttctttgatggttgccattctgcttagagaacttccattagcctttcttttggtgtgggtcttctggtgacaaattctgtttcacttcctctgagaatgttttgctttccttttcattcctgaaggacatttttgctggatataagaattctgggttaatggttcttttcatcgcttgaaaaatattttgtactttcagctgggctccatggtttctgatgagaaattcgctgtcatttgacttgttaatccacgatagttacggcactgtttttgtttagtggcttttgaaatgttttgtcttttg-ttttttggagtttgattattatatgtcttagtttggatttctttgggttcatcctgtttagggtttgcttacgttagatctgtagatttatgtctcttgccaaatttgggaacttgtaagccatcacttcatggagtacagtttcagccccaccttctttctcctgtcccttcgt--gagttcagtgaccggagttgttatagtcccataggtccccgagactgtttt
s panTro5.chr15              73749296 939 -  83230942 atgaatgtatttagacttgggtcctatccccaaaatatctc---atttatatgcaaatattcctaaatctgataaaaatctgaaatttggaacacttgtgctcctgagcattttataagggacactcaacctgtgtatatatgaacacttatcagattgtacctggtgttgtcatttaccagcttcagggatatagaaactacctcccttgacgttcctttatgttctcctgttcataacatacttgccttaaatatttcatttacttacattgataaccgcatatgacaatgttataatttttggttgaaccttcagacgtaatttagcaaagtcaagaggtgagggaaaagtctattgtatttatgcattggtgtgcttgtcat-ctcctccttccggaagttccagggtt---ttctttgatggttgccattctgcttagagaacttccattagcc-ttcctttggtgtgggtcttctggtgacaaatcctgtttcacttcctctgagaatgttttgctttccttttcattcccgaaggacatttttgctggatataagaattctgggttaatggttcttttcattgtttgaaaaatattttgtactttcagctgggctccatggtttctgatgagaaattcgctgtcatttgacttgttaatgcacgatagttaaggca--gtttttgtttagtggcttttgaaatgttttgtcttttg-ttttttggagtttgattattatatgtcttagtttggatttctttgggttcatcctgtttagggtttgcttaccttagatctgtagatttatgtctcttgccaaatttgggaacttttaagccatcacttcatagagtacagtttcaaccccaccttctttctcctgtcccttcgt--gagttcagtgaccggagttgttatagtcctataggtccccaagactggttt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       101594 943 -    281578 atgaatgtatttagacttgggtcctatccccaaaatatctcattatttatatgcagatattcctaaatctgataaaactctgaaatgtggaacacttgtgctcctgagcattttataagggacactcaacctgtgtatatatgaacacttatcagattgtacctggtgttgtcatttaccagcttcagggatatagaaactacctcccttgacgttcctttatgttctcctgttcataacatacttgccttaaatatttcatttacttacattgataaccacatatgacaatgttataatttttggttgaaccttcagacataatttagcaaagtcaagaggtgagggaaaagtctattgtatttatgtgttggtgtgcttgtcat-ctcctccttccggaagttccagggtt---ttctttgatggttgccattctgcttagagaacttccattagcctttcttttggtgtgggtcttctggtgacaaatcctgtttcacttcctctgagaatgttttgctttccttttcattcccgaaggacatttttgctggatataagaattctgggttaatggttcttttcattgtttgaaaaatattttgtactttcagctgggctccatggtttctgatgagaaattcgctgtcatttgacttgttaatgcacgatagttaaggca--gtttttgtttagtggcttttgaaatgttttgtcttttg-ttttttggagtttgattattatatgtcttagtttggatttctttgggttcatcctgtttagggtttgcttaccttagatctgtagatttatgtctcttgctaaatttgggaacttttaagccatcacttcgtagagtacagtttcaaccccaccttctttctcctgtcccttcgt--gagttcagtgaccggagttgttatagtcccataggtccccaagactgtttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70959938 948 + 121039945 atgaatatatttcaacttgggtcctatccccagaatatctcattatttatatgcaaatattcctaaatctgataaaaatctccaatgcggaacacttgtgctcctgagcattttataagggacactcagcctgtgtatgtatgaacatttatcagattgtacttggtgttgtcatttaccagctttagggatatagaaactacctcctttgacgttcctttatgttctcctgttcaaaatatacctgccttaaatatttcatttgcttacgttgataaccacatatgacaatgttacaatttttggttgaaccttcagacataatttagcaaagtcaagaggtgagggaaaagtctattgtatttatgcagtggtgtgcttgtcat-ctcctccttctgaaagttccagggttttcttctttgatggttgccattctgcttagagaacttccattagcctttcttttggtgtgggtcttctggtgacaaattctgttttacttcctctgagaatgttttgctttccttttcattcctgaaggacatttttgctggatataagaattctgggttaatggttcttttcattgtttgaaaaatattttgtactttcagctgggctccatggtttctgatgagaaattcactgtcatttgacttgttaatccatgatagttaaggca--gtttttgtttagtggcttttgaaatgttttgtcttttg-ttttttggagtttgactattatatgtcttagtttggatttctttgggttcatcctgtttagggcttgcttaccttagatctgtaaatttatgtctcttgccaaatttgggaacttttaagccatcactttgtagagtacagtttcaaccccaccttctttctcctgtcccttcgtgagagttcagtgaccagagttgttatagtcccataagtccctgaaactggttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164266848 948 - 169600520 atgaatgtatttagacttgggtcctatccccaaaatatctcattatttacatgcaaatattcctaaatctgataaaaatctg-aatgtggaacacttgggctcctgagcgttttgtaagggacactcaacctgtgtgtgtatgaacacttaccagattgtacctagtgttgtcatttaccagcttctgggatatagaaactaccttcctttatgttcctttatgttctccttttcataatatatttgccttaagtatttcatttgcttacattgataaccacatatgacagtgttataatttttggttgaacccttagacataatttagcaaagtcaagaggtgaggaaaaagtgtattgtatttatgcataggtgtgcgtgtcatgctcttctttctggaagttccagggttttcttgtttgatggttgccattctgcttaaagaacttccattagcctttcttttggtgtgtgtcttctggtgacaaattctgttttacttcctctgagaatgttttgctttccttttcattcctgaaggacatttttcctggatataagaattctgtggtaatggttcttttcatcatttgaaaaatatttcgtactttcagctggggtccatggtatctgatgagaaattcgctgtcatttgacttgttaatccacaatagctaaggtactgtttttctttagtggcttttgaaatgttttgtcttctg-ttttttggagtttgattatgatatgtcttagattggatttctttgggttcatcctgtttagggtttgcttactttagatctgtagatttatgtcttttgccaaatttgggaacttctaagccatcacttcttagagtacagtttcaagcccgccttctttctcctgtcccttcct--gagttcagtgaccagagttgttatagtcccacaggtctccgagactgtttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165587720 948 - 171882078 atgaatgtatttagacttgggtcctatccccaaaatatctcattatttacatgcaaatattcctaaatctgataaaaatctg-aatgtggaacacttgggctcctgagcgttttgtaagggacactcaacctgtgtgtgtatgaacacttaccagattgtacctagtgttgtcatttaccagcttctgggatatagaaactaccttcctttatgttcctttatgttctccttttcataatatatttgccttaagtatttcatttgcttacattgataaccacatatgacagtgttataatttttggttgaacccttagacataatttagcaaagtcaagaggtgaggaaaaagtgtattgtatttatgcataggtgtgcgtgtcatgctcttctttctggaagttccagggttttcttgtttgatggttgccattctgcttaaagaacttccattagcctttcttttggtgtgtgtcttctggtgacaaattctgttttacttcctctgagaatgttttgctttccttttcattcctgaaggacatttttcctggatataagaattctgtggtaatggttcttttcatcatttgaaaaatatttcgtactttcagctggggtccatggtatctgatgagaaattcgctgtcatttgacttgttaatccacaatagctaaggtactgtttttctttagtggcttttgaaatgttttgtcttctg-ttttttggagtttgattatgatatgtcttagattggatttctttgggttcatcctgtttagggtttgcttactttagatctgtagatttatgtcttttgccaaatttgggaacttctaagccatcacttcttagagtacagtttcaagcccgccttctttctcctgtcccttcct--gagttcagtgaccagagttgttatagtcccacaggtctccgagactgtttt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       400678 948 +   4116138 atgaatgtatttagacttgggtcctatccccaaaatatctcattatttacatgcaaatattcctaaatctgataaaaatctg-aatgtggaacacttgggctcctgagcgttttgtaagggacactcaacctgtgtgtgtatgaacacttatcagattgtacctagtgttgtcatttaccagcttctgggatatagaaactaccttcctttatgttcctttatgttctccttttcataatatatttgccttaagtatttcatttgcttacattgataagcacatatgacagtgttataatttttggttgaaccctcagacataatttagcaaagtcaagaggtgaggaaaaagtgtattgtatttatgcataggtgtgcgtgtcatgctcttctttctggaagttccagggttttcttctttgatggttgccattctgcttaaagaacttccattagcctttcttttggtgtgtgtcttctggtgacaaattctgttttacttcctctgagaatgttttgctttctttttcattcctgaaggacatttttcctggatataagaattctgtggtaatggttcttttcatcatttgaaaaatatttcgtactttcagccagggtccatggtatctgatgagaaattcgctgtcatttgacttgttaatccacaatagcaaaggtactgtttttctttagtggcttttgaaatgttttgtcttctg-ttttttggagtttgattatgatatgtcttagattggatttctttgggttcatcctgtttagggtttgcttactttagatctgtagatttatgtcttttgccaaatttgggaacttctaagccatcacttcttagagtacagtttcaaccccgccttctttctcctgtcccttcct--gagttcagtgaccagagttgttacagtcccataggtctccgagactgtttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53833023 950 +  58131712 atgaatgtatttagacttgggtcctatccccaaactatctcattatttacatgcaaatattcctaaatctgataaaaatctgaaatgtggaacacttgggttcctgagcgttttgtaagggacactcaacctgtgtgtgtatgaacacttatcagattgtacctagtgttgtcatttaccagcttctgggatatagaaactaccttcctttatgctcctttatgttctccttttcataatatatttgccttaagtatttcatttgcttacattgataaccacatatgacagtgttataatttttggttgaaccttcagacataatttagcaaagtcaagaggtgaggaaaaagtgtattgtatttatacatagctgtgcgtgtcatgctcttctttctggaagttccagggttttcttgtttgatggttgccattctgcttagagaacttccattagcctttcttttggtgtgtgtcttctggtgacaaattctgttttacttcctctgagaatgttttgctttccttttcattcctgaaggacatttttcctggatataagaattctgtggtaatggttcttttcatcatttgaaaaatatttcgtactttcagccggggtccatgatatctgatgagaaattcgctgtcatttgacttgttaatccacaatagctaaggtactgtttttctttagtggcttttgaaatgttttgtcttctgtttttttggagtttgattatgatatgtcttagattggatttctttgggttcatcctgtttagggtttgcttactttagatctgtagatttatgtcttttgccaaatttgggaacttttaagccatcacttcttagagtacagtttcaaccctgccttctttctcctatcccttcct--gagttcagtgaccagagttgttatagtcccataggtctccgagacggtttt
i chlSab2.chr26             I 37 I 61
s manLeu1.NW_012102332v1       447690 948 -   3636681 atgaatgtatttagacttgggtcctatccccaaaatatctcattatttacatgcaaatattcctaaatctgataaaaatctg-aatgtggaacacttgggctcctgagcgttatgtaagggacactcaacctgtgtgtgtatgaacacttatcagattgtacctagtgttgtcatttaccagcttctgggatatagaaactaccttcctttatgttcctttatgttcttcttttcataatatatttgccttaagtatttcatttgcttacattgataagcacatatgacagtgttataatttttggttgaaccctcagacataatttagcaaagtcaagaggtgaggaaagagtctactgtatttatgcgtaggtgtgcgtgtcatgctcttctttctggaagttccagggttttcttgtttgatggttgccattctgcttaaagaacttccattagcctttcttttcgtgtgtgtcttctggtgacaaattctattttacttcctctgagaatgttttgctttctttttcatttctgaaggacatttttcctggatataagaattctgtggtaatggttcttctcatcatttgaaaaatattttatactttcagctggcctccatggtatctgatgagaaattcgctgtcatttgacttgttaatccacaatagctaaggtactgtttttctttagtggcttttgaaatgttttgtcttctg-ttttttggagtttgattatgatatgtcttagattggatttctttgggttcatcctgtttagggtttgcttactttagatctgtagatttatgtcttttgccaaatttgggaacttctaagccatcacttcttagagtacagtttcaaccccgccttctttctcctgtcccttcct--gagttcagtgaccagagttgttatagtcccataggtctccgagactgtttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       429126 948 -   4457520 atgaatgtatttcgacttgagtcctatccccaaaatatctcattatttacatgcaaatattcctaaatctgataaaaatctgaaatgtgcaacacttgtgctcctgagcgttttgtaagggacactcagcctgtgtgtgtatgaacacttatcagattgtacctagtgttgtcatttaccagcttctgggatatagaaactaccttcctttatgttcctttatgttctccttttcataatatatttgccttaaatatttcatttgcttacattgataaccacatatgacagtgttataatttttggttgaaccttcagacatagtttagcaaagtcaagaggtgaggaaaaagtgtattgtatttatgcataggtatacgtgtcatgcttttctttttggaagttccagggttttcttgtttgatggttgccattctgcttagagaacttccattagcctttcttttggtgtgggtcttctggtgacaaattctgttttatttcctctgagaatgttttgctttccttttcattcctgaaggacatttttcctggatataagaattctgtggtaatggttcttttcatcatttgaaaaatatttcgtactttcagccgggccccatggtatctgatgagaaattcgctgtcatttgacttgttaatccgcaatagctaaggtactgtttttctttagtggcttttgaaatgttttgtcttttg-ttttttggagtttgattatgatatgtcttagattggatttctttgggttcatcctgtttagggtttgcttacctt-gatctgtagatttatgtctcttgccaaatttggggacttttaagccatcacttcttagagtacagtttcaaccccgccttctttctcctgtcacttcct--gagttcagtgatcagagttgttgtagtcccataggtccctgagactgtttg
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             385816 22272 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74050021 15176 -  99763055 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=2548.000000
s hg38.chr15_KI270851v1_alt    177396 1 +    263054 t
s panTro5.chr15              73750235 1 -  83230942 t
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       102537 1 -    281578 t
i gorGor5.CYUI01000141v1    C 0 I 1
s nomLeu3.chr6               70960886 1 + 121039945 t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164267796 1 - 169600520 t
i rheMac8.chr7              C 0 I 54
s cerAty1.NW_012001462v1       401626 1 +   4116138 t
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       448638 1 -   3636681 t
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       430074 1 -   4457520 t
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             385816 22272 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74050021 15176 -  99763055 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e chlSab2.chr26              53833973 61 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I
e macFas5.chr7              165588668 0 - 171882078 C

a score=910.000000
s hg38.chr15_KI270851v1_alt    177397 1 +    263054 t
s gorGor5.CYUI01000141v1       102539 1 -    281578 t
i gorGor5.CYUI01000141v1    I 1 C 0
s cerAty1.NW_012001462v1       401627 1 +   4116138 t
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       448639 1 -   3636681 t
i manLeu1.NW_012102332v1    C 0 I 72
s colAng1.NW_012115278v1       430075 1 -   4457520 t
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             385816 22272 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e nomLeu3.chr6               70960887 0 + 121039945 C
e panPan2.chr15              74050021 15176 -  99763055 I
e panTro5.chr15              73750236 0 -  83230942 C
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e rheMac8.chr7              164267797 54 - 169600520 I
e chlSab2.chr26              53833973 61 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I
e macFas5.chr7              165588668 0 - 171882078 C

a score=910.000000
s hg38.chr15_KI270851v1_alt    177398 1 +    263054 t
s gorGor5.CYUI01000141v1       102540 1 -    281578 t
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70960887 1 + 121039945 t
i nomLeu3.chr6              C 0 C 0
s cerAty1.NW_012001462v1       401628 1 +   4116138 t
i cerAty1.NW_012001462v1    C 0 I 12764
s colAng1.NW_012115278v1       430076 1 -   4457520 t
i colAng1.NW_012115278v1    C 0 I 64
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             385816 22272 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74050021 15176 -  99763055 I
e panTro5.chr15              73750236 0 -  83230942 C
e manLeu1.NW_012102332v1       448640 72 -   3636681 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e rheMac8.chr7              164267797 54 - 169600520 I
e chlSab2.chr26              53833973 61 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I
e macFas5.chr7              165588668 0 - 171882078 C

a score=24035.000000
s hg38.chr15_KI270851v1_alt    177399 42 +    263054 gtttgtttgtttgttttGCGGGTAC----ATTGCTTTCTTTCtccc
s panTro5.chr15              73750236 41 -  83230942 -ttttttttttttttttgctgggac----atttctttctttctctc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       102541 42 -    281578 tttttttttttttttttgctgggac----atttctttctttctctc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70960888 42 + 121039945 ttttttttttttttctttcGGGGAC----ATTTCTTTTCTTCTTCC
i nomLeu3.chr6              C 0 I 11487
s macFas5.chr7              165588668 41 - 171882078 -----ttttttttttttgtggggacatatatttctttctttctttc
i macFas5.chr7              C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             385816 22272 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74050021 15176 -  99763055 I
e colAng1.NW_012115278v1       430077 64 -   4457520 I
e manLeu1.NW_012102332v1       448640 72 -   3636681 I
e cerAty1.NW_012001462v1       401629 12764 +   4116138 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e rheMac8.chr7              164267797 54 - 169600520 I
e chlSab2.chr26              53833973 61 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=4203.000000
s hg38.chr15_KI270851v1_alt    177441  64 +    263054 t----------------------------------------tcccgtcctgtcctatcccatcccgtcctgtcctatcccgtcccatcccgtcccttcccgtcT--
s panTro5.chr15              73750277 104 -  83230942 ttcccttcccatcccgtcccatccagtcccatcccgtcccatcccttcctgtcccttcccatcccttcccgtcccttcccatcccttcccgtcccttcccatct--
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       102583  84 -    281578 ttcccttcccatcccatccca--------------------tccagtcctgtcccgtcccatcccttcccatcccttcccatcccttcccgtcctttcccatct--
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              165588709  15 - 171882078 -------------------------------------------------------------------------------------------ttttttttttttttt
i macFas5.chr7              C 0 I 5
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             385816 22272 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e nomLeu3.chr6               70960930 11487 + 121039945 I
e panPan2.chr15              74050021 15176 -  99763055 I
e colAng1.NW_012115278v1       430077  64 -   4457520 I
e manLeu1.NW_012102332v1       448640  72 -   3636681 I
e cerAty1.NW_012001462v1       401629 12764 +   4116138 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e rheMac8.chr7              164267797  54 - 169600520 I
e chlSab2.chr26              53833973  61 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=273.000000
s hg38.chr15_KI270851v1_alt    177505 1 +    263054 T
s panTro5.chr15              73750381 1 -  83230942 t
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       102667 1 -    281578 t
i gorGor5.CYUI01000141v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             385816 22272 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e nomLeu3.chr6               70960930 11487 + 121039945 I
e panPan2.chr15              74050021 15176 -  99763055 I
e colAng1.NW_012115278v1       430077 64 -   4457520 I
e manLeu1.NW_012102332v1       448640 72 -   3636681 I
e cerAty1.NW_012001462v1       401629 12764 +   4116138 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e rheMac8.chr7              164267797 54 - 169600520 I
e chlSab2.chr26              53833973 61 +  58131712 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I
e macFas5.chr7              165588724 5 - 171882078 I

a score=2800.000000
s hg38.chr15_KI270851v1_alt    177506 1 +    263054 c
s panTro5.chr15              73750382 1 -  83230942 c
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       102668 1 -    281578 c
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164267851 1 - 169600520 c
i rheMac8.chr7              I 54 C 0
s macFas5.chr7              165588729 1 - 171882078 c
i macFas5.chr7              I 5 C 0
s chlSab2.chr26              53834034 1 +  58131712 c
i chlSab2.chr26             I 61 C 0
s manLeu1.NW_012102332v1       448712 1 -   3636681 c
i manLeu1.NW_012102332v1    I 72 C 0
s colAng1.NW_012115278v1       430141 1 -   4457520 c
i colAng1.NW_012115278v1    I 64 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             385816 22272 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e nomLeu3.chr6               70960930 11487 + 121039945 I
e panPan2.chr15              74050021 15176 -  99763055 I
e cerAty1.NW_012001462v1       401629 12764 +   4116138 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=222697.000000
s hg38.chr15_KI270851v1_alt    177507 84 +    263054 ggagtctctgcctgtttcccaggctgga-------gtgcagtgc-acgttctcggctcactgcaactgccgcctccctagttcgaatgattc
s panTro5.chr15              73750383 84 -  83230942 ggagtctctccctgtttcccaggctgga-------gtgcaatgg-acgttctcggctcactgcaaccgccgcctccctagttcgaatgattc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       102669 84 -    281578 ggagtctctccctgtttcccaggctgga-------gtgcaatgg-acgttctcggctcactgcaaccgccgcctccctagttcgaatgattc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70972417 85 + 121039945 ggagtctcactctgtcgcccaggctgga-------gtgcagtggcgtgatctcggctcactgtaagctgggcctcccgggttcacaccattc
i nomLeu3.chr6              I 11487 C 0
s rheMac8.chr7              164267852 92 - 169600520 ggagtctctccctgtttcccaggctggagtgcaatgtgcaatggcacgatctcagctcactgcaaccgcctccccccgagttcgaacgattc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165588730 92 - 171882078 ggagtctctccctgtttcccaggctggagtgcaatgtgcaatggcacgatctcagctcactgcaaccgcctccccccgagttcgaacgattc
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              53834035 85 +  58131712 ggagtctctccctgtttcccaggatgga-------gtgcaatggcacgatctcagctcactgcaaccgcctccccccgagttcgaacgattc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       448713 85 -   3636681 ggagtcgctccctatttcccaggctgga-------gtgcaatggcacgatctcagctcactgcaaccgcctccccccgagttcgaacgattc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       430142 85 -   4457520 ggagtctctccctatttcccaggctgga-------gtgcaatggcacgatctcggctcactgcagccgcctccccctgagttcaaacgattc
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             385816 22272 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e panPan2.chr15              74050021 15176 -  99763055 I
e cerAty1.NW_012001462v1       401629 12764 +   4116138 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=86793.000000
s hg38.chr15_KI270851v1_alt    177591 19 +    263054 tcctgtctgagcctctcga
s panTro5.chr15              73750467 19 -  83230942 ttctgtctcagcctctcga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74065197 19 -  99763055 tcctgcctcagcctcccga
i panPan2.chr15             I 15176 C 0
s gorGor5.CYUI01000141v1       102753 19 -    281578 ttctgtctcagcctctcga
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70972502 19 + 121039945 tcctgcctcagcctcccga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164267944 19 - 169600520 tcctgtctcagcctctcga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165588822 19 - 171882078 tcctgtctcagcctctcga
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       414393 19 +   4116138 tcctgcctcagcctccaga
i cerAty1.NW_012001462v1    I 12764 C 0
s chlSab2.chr26              53834120 19 +  58131712 tcctgtctcagcctctcga
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       448798 19 -   3636681 tcctgtctcagcctctcga
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       430227 19 -   4457520 tcctgtctcagcctcttga
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             385816 22272 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e macNem1.NW_012011934v1       431604 16911 +   2379783 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=594475.000000
s hg38.chr15_KI270851v1_alt    177610 118 +    263054 gtagctgggattataggtacccgccaccatgcccagct--ca--gttttatatttttaatagagatgaggtttcaccatgttggccagggtggtctcaaagtcctaaccttgtgatctgcct
s panTro5.chr15              73750486 118 -  83230942 gtagctgggattataggtgcccgccaccatgcccgggt--ca--gttttgtatttttaatagagatggggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccgcct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74065216 120 -  99763055 gtagctgggactacaggcgcccaccaccaagcccagctaata--tatttgtatttttagtaaagatggggtttcaccatgttacccaggatggtctcgatctctcgaccttgtgatccgcct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       102772 118 -    281578 gtagctgggattataggtgcccgccaccatgcccggct--ca--gttttgtgtttttaatagagatggggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccgcct
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70972521 120 + 121039945 gtagctgggactacaggcacccgccaccaagcccagctaatt--tttttgtatttttagtagtgatggggtttcaccatgttagcaaggatggtctcgatctcctgaccttgtgatccacct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164267963 118 - 169600520 gtagctgggattacaggtgcctgccaccatgcccagct--ca--tttttgtatttttaatagagatcgggtttcaccatgttggccaggctagtttcaaactcctgaccttgtgatccgcct
i rheMac8.chr7              C 0 I 13267
s macFas5.chr7              165588841 118 - 171882078 gtagctgggattacaggtgcctgccaccatgcccagct--ca--tttttgtatttttaatagagatcgggtttcaccatgttggccaggctagtttcaaactcctgaccttgtgatccgcct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       448515 120 +   2379783 gtagctgggactacaggtgcccgccaccacgcccagct--aatttttttgtatttttagtagagatgaggtttcaccgtgttagccaggatggttttgatctcctgaccttgtgatccgcgc
i macNem1.NW_012011934v1    I 16911 C 0
s cerAty1.NW_012001462v1       414412 120 +   4116138 gtagctgggactacaggtgcccgccaccacgcccagct--aatttttttgtatttttagtagagataaagtttcaccgtgttagccaggatggtcttgatctcctgaccttgtgatccgcgc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53834139 118 +  58131712 gtagctgggattacaggtgcctgccaccatgcccagct--ca--tttttgtatttttaatagagatcgggtttcaccatgttggccaggctagtttcaaactcctgaccttgtgatccgcct
i chlSab2.chr26             C 0 I 12213
s manLeu1.NW_012102332v1       448817 118 -   3636681 gtagctgagattacaggtgcctgccaccatgcccagct--ca--tttttgtatttttaatagagatcgggtttcaccatgttggccaggctagtttcaaactcctgaccttgtgatccgcct
i manLeu1.NW_012102332v1    C 0 I 12642
s colAng1.NW_012115278v1       430246 118 -   4457520 gtagctgggattacaggtgcccgccaccatacccagct--ca--tttttgtatttttaatagagatcgggtttcaccatgttggccaggctagtttcaaactcctgaccttgtgatccgcct
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             385816 22272 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=25866.000000
s hg38.chr15_KI270851v1_alt    177728 7 +    263054 gcctcgg
s panTro5.chr15              73750604 7 -  83230942 gcctcgg
i panTro5.chr15             C 0 I 11273
s panPan2.chr15              74065336 7 -  99763055 gcgcctg
i panPan2.chr15             C 0 I 6
s gorGor5.CYUI01000141v1       102890 7 -    281578 gcctcgg
i gorGor5.CYUI01000141v1    C 0 I 11233
s nomLeu3.chr6               70972641 7 + 121039945 gcctcgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164281348 7 - 169600520 gcctagg
i rheMac8.chr7              I 13267 C 0
s macFas5.chr7              165588959 7 - 171882078 accttag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       448635 7 +   2379783 gcctagg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       414532 7 +   4116138 gcctagg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53846470 7 +  58131712 gcctcgg
i chlSab2.chr26             I 12213 C 0
s manLeu1.NW_012102332v1       461577 7 -   3636681 gcctagg
i manLeu1.NW_012102332v1    I 12642 C 0
s colAng1.NW_012115278v1       430364 7 -   4457520 accttag
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             385816 22272 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=112914.000000
s hg38.chr15_KI270851v1_alt    177735 20 +    263054 cctcccaaagtgctgggatt
s panTro5.chr15              73761884 20 -  83230942 cctcccaaagtgctgggatt
i panTro5.chr15             I 11273 C 0
s panPan2.chr15              74065349 20 -  99763055 cctcccaaagtgctgggatt
i panPan2.chr15             I 6 C 0
s gorGor5.CYUI01000141v1       114130 20 -    281578 cctcccaaagtgctgggatt
i gorGor5.CYUI01000141v1    I 11233 C 0
s nomLeu3.chr6               70972648 20 + 121039945 cctcttgaagtgctgggatt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164281355 20 - 169600520 cctcccaaagtgctgggagt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165588966 20 - 171882078 cctcccaaagtgctgggatt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       448642 20 +   2379783 cctcccaaagtgctgggagt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       414539 20 +   4116138 cctcccaaagtgccgggagt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53846477 20 +  58131712 cctcccaaagtgccgggagt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       461584 20 -   3636681 cctcccaaagtgctgggagt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       430371 20 -   4457520 cctcccaaagtgctgggatt
i colAng1.NW_012115278v1    C 0 I 12763
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             385816 22272 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=28725.000000
s hg38.chr15_KI270851v1_alt    177755 6 +    263054 acaggt
s panTro5.chr15              73761904 6 -  83230942 acaggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74065369 6 -  99763055 acaggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       114150 6 -    281578 acaggc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70972668 6 + 121039945 acaggc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164281375 6 - 169600520 acaggg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165588986 6 - 171882078 acagct
i macFas5.chr7              C 0 I 13307
s macNem1.NW_012011934v1       448662 6 +   2379783 acaggg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       414559 6 +   4116138 acaggc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53846497 6 +  58131712 acaggc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       461604 6 -   3636681 acaggc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       443154 6 -   4457520 acaggt
i colAng1.NW_012115278v1    I 12763 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             385816 22272 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=105369.000000
s hg38.chr15_KI270851v1_alt    177761 19 +    263054 gtgagccaccatgcccagc
s panTro5.chr15              73761910 19 -  83230942 gtgagccaccatgcccagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74065375 19 -  99763055 gtgagccaccatgcccagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       114156 19 -    281578 gtgagccaccatgcccagc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70972674 19 + 121039945 gtgagccaccatgcccagc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164281381 19 - 169600520 gtgagccaccgcgcccggc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165602299 19 - 171882078 gtgagccaccgcgcccggc
i macFas5.chr7              I 13307 C 0
s macNem1.NW_012011934v1       448668 19 +   2379783 gtgagccaccgcgcccggc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       414565 19 +   4116138 gtgagccaccgcgcccggc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53846503 19 +  58131712 gtgagccaccgcgcccggc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       461610 19 -   3636681 gtgagccaccgcacctggc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       443160 19 -   4457520 gtgagccgccgcgcccggc
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116224213 14849 + 116334831 I
e proCoq1.NW_012148396v1     13455455 15489 +  16154928 I
e canFam3.chr3               59962836 21503 -  91889043 I
e aotNan1.NW_018503298v1       382779 14077 +   3831555 I
e otoGar3.GL873689             385816 22272 +   3845361 I
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154454560 20133 - 158406734 I

a score=271280.000000
s hg38.chr15_KI270851v1_alt    177780 23 +    263054 cTATTATTTGGCAGTCTTTAAAC
s panTro5.chr15              73761929 23 -  83230942 cTATTATTTGGCAGTCTTTAAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74065394 23 -  99763055 cTATTATTTGGCAGTCTTTAAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       114175 23 -    281578 cTATTATTTGGCAGTCTTTAAAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70972693 23 + 121039945 cTATTATTTGGCAGTCTTTAAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164281400 23 - 169600520 cTATTATTTGGCAGCCTTTAAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165602318 23 - 171882078 cTATTATTTGGCAGCCTTTAAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       448687 23 +   2379783 cTATTATTTGGCAGCCTTTAAAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       414584 23 +   4116138 cTATTATTTGGCAGCCTTTAAAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53846522 23 +  58131712 cTAGTATTTGGCAACCTTTAAAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       461629 23 -   3636681 cTATTATTTGGCAGCCTTTAAAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       443179 23 -   4457520 cTATTATTTGGCAGCCTTTAAAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154474693 23 - 158406734 CTATTATTTGATGGTCTTTAAAC
i calJac3.chr6              I 20133 C 0
s aotNan1.NW_018503298v1       396856 23 +   3831555 CTATTATTTGACGGTCTTTAAAC
i aotNan1.NW_018503298v1    I 14077 C 0
s micMur3.chr9              116239062 21 + 116334831 CTATTATTTGGCAGTCTTT--AC
i micMur3.chr9              I 14849 C 0
s proCoq1.NW_012148396v1     13470944 23 +  16154928 CTATTATTTGTCAGTCTTTAAAC
i proCoq1.NW_012148396v1    I 15489 C 0
s otoGar3.GL873689             408088 23 +   3845361 CTATTATTTGGCAGTGTTTAAAC
i otoGar3.GL873689          I 22272 C 0
s canFam3.chr3               59984339 21 -  91889043 CTATCACTTGGCAGTCTTTAA--
i canFam3.chr3              I 21503 C 0
e cebCap1.NW_016107707v1       319027 12746 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=1849302.000000
s hg38.chr15_KI270851v1_alt    177803 157 +    263054 TAATGATAATAGGGGTCTTCTGCCTTTAGAAGAATTAGAACTGTGATTTAATTTGCAAATGAAAGTAGGTGTTCTCCAGAGTGGGCAACATTTAGATTAAAATAAAGG-T-----TTTGGTTTTAGATTTCAAGGCCAGCTTGAGATGCTGTGCTGGGTTCCC
s panTro5.chr15              73761952 157 -  83230942 TAATGATAATAGGGCTCTTCTGCCTTTAGAAGAATTAGAACTATGATTTAATTTGCAAATGAAAGTAGCTGTTCTCCAGAGTGGGCAACGTTTAGATTAAAATAAAGG-T-----TTTGGTTTTAGATTTCAAGGCCAGCTTGAGATGCTGTGCTGGGTTCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74065417 157 -  99763055 TAATGATAATAGGGCTCTTCTGCCTTTAGAAGAATTAGAACTATGATTTAATTTGCAAATGAAAGTAGCTGTTCTCCAGAGTGGGCAACGTTTAGATTAAAATAAAGG-T-----TTTGGTTTTAGATTTCAAGGCCAGCTTGAGATGCTGTGCTGGGTTCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       114198 157 -    281578 TAATGATAATAGGGCTCTTCTGCCTTTAGAAGAATTAGAACTATGATTTAATTTGCAAATGAAAGTAGGTGTTCTCCAGAGTGGGCAACGTTTAGATTAAAATAAAGG-T-----TTTGGTTTTAGATTTCAAGGCCAGCTTGAGATGCTGTGCTGGGTTTCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70972716 152 + 121039945 TAATAATAATAGTGCTCTTCTGCCTTTAGAAGCATTAGAAGTATGATTTAATTTGCAAATGAAAGTAGGTGTTCTCCAGAGTGGGCAACATTTAGAC-----TAAAGG-T-----TTTGGTTTTGGATTTCAAGGCCAGCTTGAGATGCTGTGCTGGGTTCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164281423 149 - 169600520 TAATGATAATAGGGCTCTTCTGCCTTTTGAAGAATTAGAGCTGTGATTTAATTTGCAAATGAAAGTAGGTGTTCTCCAGAGTGGG--------ATATTAAAATAAAGA-T-----TTTGGTTTTAGCTTTCAAGGCCAGCTTGAGATGCTGTGCTGGGTTTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165602341 149 - 171882078 TAATGATAATAGGGCTCTTCTGCCTTTTGAAGAATTAGAGCTGTGATTTAATTTGCAAATGAAAGTAGGTGTTCTCCAGAGTGGG--------ATATTAAAATAAAGA-T-----TTTGGTTTTAGCTTTCAAGGCCAGCTTGAGATGCTGTGCTGGGTTTCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       448710 149 +   2379783 TAATGATAATAGGGCTCTTCTGCCTTTTGAAGAATTAGAGCTGTGATTTAATTTGCAAATGAAAGTAGGTGTTCTCCAGAGTGGG--------ATATTAAAATAAAGA-T-----TTTGGTTTTAGCTTTCAAGGCCAGCTTGAGATGCTGTGCTGGGTTTCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       414607 149 +   4116138 TAATGATAATAGGGCTCTTCTGCCTTTTGAAGAATTAGAGCTGTGATTTAATTTGCAAATGAAAGTAGGTGTTCTCCAGAGTGGG--------ATATTAAAATAAAGA-T-----TTTGGTTTTAGCTTTCAAGGCCAGCTTGAGATGCTGTGCTGGGTTTCC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53846545 149 +  58131712 TAATGATAATAGGGGTCTTCTGCCTTTTGAAGAATTAGAGCTGTGATTTAATTTGCAAATGAAAGTAGGTGTTCTCCAGAGTGGG--------AGATTAAAATAAAGA-T-----TTTGGTTTTAGCTTTCAAGGTCAGCTTGAGATGCTGTGCTGGGTTCCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       461652 149 -   3636681 TAATGATAATAGGGCTCTTCTGCCTTTTGAAGAATTAGAGCTGTGATTTAATTTGCAAATGAAAGTAGTTGTTCTCCAGAGTGGG--------ATATTAAAATAAAGA-T-----TTTGGTTTTAGCTTTCAAGGCCAGCTTGAGATGCTTTGCTGGGTTTCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       443202 149 -   4457520 TAATGGTAATAGGGCTCTTCTGCCTTTTGAAGAATTAGAACTGTGATTTGATTTGCAAATGAAAGTAGGTGTTCTCCAGAGTGGG--------AGATTAAAATAAAGG-T-----TTTGGTTTTAGATTTCAAGGCCAGCTTGAGATGCTGTGCTGGGTTCCC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154474716 157 - 158406734 TAATGATAATAGGGCTCTTCTGCCTTTAGAAGATTTAGAACTGTGATTTAATAGGGAAATGAAAGTCGGTGTTCTCCAGAGTGAGCAACATTTAGATTAAAATAAAGG-T-----TTTTGTTTTAGATTTCAAGACCAGTTTGAGATGCTGTGCTGGGTTCCC
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       331773 157 -   2086007 TAATGATAATAGGGCTCTTTTGCCTTTAGAAGATTTAGAACTGTGATTTAATAGGCAAGTGAAAGTAGGTGTTCTCCAGAGTGAGCAACATTTAGATTAAAATAAAGG-T-----TTTTGCTTTAGATTTCAAGACCATTTTGAGATGCTGTGCTGGGTTCCC
i cebCap1.NW_016107707v1    I 12746 C 0
s aotNan1.NW_018503298v1       396879 157 +   3831555 TAATGGTAATAGGGCTCTTCTGCCTTTAGAAGATTTAGAACTGTGATTTAATAGGCAAATGAAAGTAGGTGTTGTCCAGAGTGAGCAACATTTAGATTAAAATAAAGG-T-----TTTTGTTTTAGATTTCAAGACCAGTTTGAGATGCTGTGCTGGGTTCCC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116239083 156 + 116334831 TAATGATAATAAGGCTCTTCTGCCTTTAGAAGAATTAGAACTATGACTTAATTTGCAAATGAAATTAAGTTTTCTCCAGAGTGGATAACATTTAGATGAAAATAAGGG-------TTTTTTTTTAGTTTTCAAGGCCAAGTTAAGGTGCTGTGCTGTGTTCCC
i micMur3.chr9              C 0 I 216
s proCoq1.NW_012148396v1     13470967 158 +  16154928 TAATGATAATAAGGCTCTTCTGCCTTCAGAAGAATTAGAACTATAACTTAATTTGCAAATGAAATTAAGTTTTCTCCAGAGTGGACAACATTTAGATTAAAATAAGGGGT-----TTTGTTTTTAGTTTTCAAAGCCAAGTTAAGGTGCTGTGCTGTGTTCCC
i proCoq1.NW_012148396v1    C 0 I 217
s otoGar3.GL873689             408111 156 +   3845361 TCATGATAATAAGGCTGTTCTGCTTTTAGAAGAATTAGAACTACGACTTAATTTGCAAATGAAATTAAGTATTCTCTGG-------AACATTTAGATTAAAACAAAGGGTTTTGCTTTTGTTTTAGTATTCAAGGCCAGGTTAAGGTGCTGTGCTGTGTTCCC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59984360 148 -  91889043 ---TGGGAATAAGGCTACTCTGCTTTTAGAAGAATTATATTTGTTACTTAATGTGCGAGTAACATTAGGT-TACTCCAGGGTGGGTGGCATTTAGGTTAAAATAA--G-T--------GGTTTTGGTTTGCAAAACCAGGTTAAGGTGCAGTGCTGTGTTCCT
i canFam3.chr3              C 0 C 0
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=2322804.000000
s hg38.chr15_KI270851v1_alt    177960 270 +    263054 ACAGAGGTGGTTCTGCCTTT------CTCCAGGGGTCCTAGGCTTGTAGAGTGGTTTGGTCATGTT-AGTAATCTGTGTGGATTCAACTTACCTATGGTATCATAAATGTAT-ACATGCACAGTCAATGTTGTGTACA--TGTATACAGCAGATTTAGAGATTTATACAGT----TTATATGCTGCATAAATATATAGACGTATAGTATAACTGTATCATCAACA-TTGTCATTTGATGGGTCAAATGA---------------------------GTC--------------------------AATACCAAA--ATATAAAGCGTGGGTAAAA---AACTG
s panTro5.chr15              73762109 277 -  83230942 ACAGAGGTGGTTCTGCCTTT------CTCCAGGGGTCCTAGGCCTGTAGGGCGGTTTGGTCATGTT-AGTAATCTGTGTGGATCCATCTTACCTGTGGTATCATAAATGTAT-ACATGCGCAGTCAATGTTGTGTATG--CGTGTACAGCAAATTTAGACATTTACACAGTCAGTTTATATGCTGCATAAATATATAGATGTATAGTATAACTGTATCATCGACA-TTGTCATTTGATGGGTCAAATGA---------------------------GTC--------------------------AATACCAAA--ATATAAAGAGTGGTTAAAGGTTAATTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74065574 277 -  99763055 ACAGAGGTGGTTCTGCCTTT------CTCCAGGGGTCCTAGGCCTGTAGGGCGGTTTGGTCATGTT-AGTAATCTGTGTGGATCCATCTTACCTGTGGTATCATAAATGTAT-ACATGCGCAGTCAATGTTGTGTATG--CGTGTACAGCAAATTTAGACATTTACACAGTCAGTTTATATGCTGCATAAATATATAGATGTATAGTATAACTGTATCATCGACA-TTGTCATTTGATGGGTCAAATGA---------------------------GTC--------------------------AATACCAAA--ATATAAAGAGTGGTTAAAGGTTAATTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       114355 277 -    281578 ACAGAGGTGGTTCTGCCTTT------CTCCAGGGGTCCTAGGCCTGTAGGGCGGTTTGGTCATGTT-AGTAATCTGTGTGGATCCATCTTACCTGTGGTATCATAAATGTAT-ACATGCGCAGTCAATGTTGTGTATG--CGTGTACAGCAAATTTAGACATTTACACAGTCAGTTTATATGCTGCATAAATATATAGATGTATAGTATAACTGTATCATTGACA-TTGTCATTTGATGGGTCAAATGA---------------------------GTC--------------------------AATACCAAA--ATATAAAGAGTGGTTAAAGGTTAATTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70972868 275 + 121039945 ACAGAGGTGGTTCTGCCTTT------CTCCAGGGGTCCTAGGCCTGTAGGGTGGTTTGGTTGTGTT-AGTAATCTGTGTGGATTCAACTTACCTGTGGTATCATAAATGTAT-ATACGCACAGTCAATGTTGTGTACA--TGTATGCAGCAAATTTAGACATTTACACAGTCAGTTTATATGCTGCATAAATATATAGATGTATAGTGTAACTGTATCATCAGCA-TTGTCATTTGATGGGTCAAATGA---------------------------GTC--------------------------AATACCAAA--ATAT--AGAGTGGTTAAAGGTTAATTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164281572 273 - 169600520 CCAGAGGTGGTTCTGCCTTT------CTCCAGGGGTCCTAGGCCTGTGGGGTGGTTTGGTTGTGTT-AGTAATCTGTGTGGATTCAACTTACCTGTGGTATCATAAATGTAT-ACATGCACAGTCAATGTTGTGGACA--TGTATACCACAAACTTAGACAGTTACC----CAGTTTATATGCTGCATTAATATGTAGATGTGTAGTATAACTGTATCATCAACA-TTGTCATTTGATGTGTCAGATGA---------------------------GTC--------------------------AATACCAAA--ATATAAAGAGTGGTTAAAGGCTAATTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165602490 273 - 171882078 CCAGAGGTGGTTCTGCCTTT------CTCCAGGGGTCCTAGGCCTGTGGGGTGGTTTGGTTGTGTT-AGTAATCTGTGTGGATTCAACTTACCTGTGGTATCATAAATGTAT-ACATGCACAGTCAATGTTGTGGACA--TGTATACCACAAACTTAGACAGTTACC----CAGTTTATATGCTGCATAAATATGTAGATGTGTAGTATAACTGTATCATCAACA-TTGTCATTTGATGTGTCAGATGA---------------------------GTC--------------------------AATACCAAA--ATATAAAGAGTGGTTAAAGGCTAATTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       448859 273 +   2379783 CCAGAGGTGGTTCTGCCTTT------CTCCAGGGGTCCTAGGCCTGCGGGGTGGTTTGGTTGTGTT-AGTAATCTGTGTGGATTCAACTTACCTGTGGTATCATAAATGTAT-ACATGCACAGTCAATGTTGTGGACA--TGTATACCACAAACTTAGACAGTTACC----CAGTTTATATGCTGCATAAATATGTAGATGTGTAGTATAACTGTATCATCAACA-TTGTCATTTGATGTGTCAGATGA---------------------------GTC--------------------------AATACCAAA--TTATAAAGAGTGGTTGAAGGCTAATTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       414756 273 +   4116138 CCAGAGGTGGTTCTGCCTTT------CCCCAGGGGTCCTAGGCCTGTGGGGTGGTTTGGTTGTGTT-AGTAATCTGTGTGGATTCAACTTACCTGTGGTATCATGAATGTAT-ACATGCACAGTCAATGTTGTGGACA--TGTATACCACAAACTTAGACAGTTACC----CAGTTTATATGCTGCATAAATATGTAGATGTGTAGTATAACTGTATCATCAACA-TTGTCATTTGATGTGTCAGATGA---------------------------GTC--------------------------AATACCAAA--ATATAAAGAGTGGTTAAAGGCTAATTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53846694 277 +  58131712 CCAGAGGTGGTTCTGCCTTT------CTCCAGGGGTCCTAGGCCTGTGGGGTGGTTTGGTTGTGTT-AGTAATCTGTGTGGATTCAACTTACCTGTGGTATCATAAATGTAT-ACATGCACAGTCAGTGTTGTGGACA--TGTACACCACAAACTTAGACATTTACCCAGTCAGTTTATATGCTGCATAAATATGTAGATGTGTAGTATAACTGTATCATCAACA-TTGTCATTTGATGTGTCAGATGA---------------------------GTC--------------------------AATACCAAA--ATATAAAGAGTGGTTAAAAGCTAATTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       461801 274 -   3636681 CCAGAGGTGGTTCTGCCTTT------CTCCAGGGGTCCTAGGCCTGTGGGGTGGTTTGGTTGTGTTAAGTAATCTGTGTGGATTCAACTTACCTGTGGTATCATAAATGTAT-ACATGCACAGTCAGTGTTGTGGACA--TGTATATCACAAACTTAGACAGTTACC----CAGTTTATATGCTGCATAAATATGTAGATGTGTAGTATAACTGTATCATCAACA-TTGTCATTTGATGTGTCAGATGA---------------------------GTC--------------------------AATACCAAA--ATATAAAGAGTGGTTAAAGGCTAATTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       443351 277 -   4457520 ACAGAGGTGGTTCTGCCTTT------CTCCAGGGGTCCTAGGCCTGTGGGGTGGTTTGGTTGTGTT-AGTAATCTGTGTGGATTCAACTTACCTGTGGTATCAGAAATGTAT-ACATGCACAGTCAGTGTTGTGGACA--TGTATACCACAAACTTAGACATTTACCCAGTCAGTTTATATGCTGCATAAATATGTAGATGTGTAGTATAACTGTATCATCGACA-TTGTCGTTTGATGTGTCAGATGA---------------------------GTC--------------------------AATACCAAA--ATATAAAGAGTGGTTAAAGGCTCATTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154474873 273 - 158406734 ACAGAGGTGGTTCTGCCTTT------CTCCAGGAGTCTTAGGCCTGTAGGGTGGTTTGGCCGTGTT-AGTAATTTGTGTGGATTCACCTTACCTGTGGTGTCATAAATGTAT-GCATGCACAGTCCGTGTTGTGTACG--TGCATACAGCAAATGTATTCACTTATA----CAGTTTATATGCTGCATAAATATGTAGCTGTATAGTGTAACTGCATCATCAACA-TTGTCATTTGATGAGCAAAATGA---------------------------GGA--------------------------CATAACAAA--ATATAAAGAGTCGTTAAAGGCTGACTA
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       331930 272 -   2086007 ACAGAGCTGGTTCTGCCTTT------CTCCAGGAGTCTTAGGCCTGTAGGGTGGTTTGGCTGTGTT-AGTAATTTGTGTGGATTCAGCTTACCTGTGGTGTCATAAATGTTT-GCATGCATAGTCCATGTTGTGTACA--TTTATACAGCTAATGTATACACTTACA----CAGTTTATATGCTGCATAAATATGTAGGTGTATAGTATACCTGCATCATCAGCA-TTGTCATTTGATGA-CCAAATGC---------------------------GTA--------------------------AATAACAAA--ATATAAAGAGTGGTTGAAGGCTGACTA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       397036 262 +   3831555 ACAGAGGTGG--------TT------CTCCAGGAGTCTTAGGCCTGTAGGGAGGTTTGGCTGTGTT-AGTAATTTGTGTGGATTCAACTTACCTGTGGTGTCATAAATGTAT-GCATGCACAGTCAAGGTTGTGTACA--TGTATACAGCAGATGTATACACTTATA----CAGTTTATATGCTGCATAAATATGTAGATGTCTAGTATAACTGCACCATCAACA-TTGTCATTTGATGACCAAAATGA---------------------------GTA--------------------------AATAACAAA--ATATAAAGAG-GGTTAAAGGCTGAC--
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             408267 230 +   3845361 TTAGAGCTCGCTCTGCGTTT------CTC-----------------TGGGGTGGTTTAGCTGTATT-CGTGACGCGTGTGGAGTT--TGTGCCTATGGAGTAA---------------------CAAGGCTGTGCACA--GTTACGCAGTAGATGTAG------------------------------AGATGTGCAGATGTGTA-------TTTGTCATTAACA-TTGTTATCTGATAGCCAGAATGAGCACATTTACAGATAATGCATAACTCTGCT--------------------------AGTACCAAATTATATAAAAATTGGTTAAAGGCCAATTG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59984508 278 -  91889043 AGGAAGCTTGCTTTGTATTCTGAGGGCTCTTGGAGGGTTGAGCCTACAAAGTGTCTGGGCCATGTC-ATTGACCTGAGTGGAGTA----TGCACATGG-GTAATAGATGTGCAAAATGTGCAGGCACTGCTGTGTGTAGTGTTTTATAGCAAA------------------------------TGTGTAAATATGTAGATGTGTAGTGTCACTGCATCAATAACACTTCTCATTTGATGACCAAAAGGA---------------------------GTAGATTTACAGATAATGCCTAACTGTTGAGTACCAAA--ATATAAAGAATGGTTAAGGGCTAATTG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116239239 216 + 116334831 I
e proCoq1.NW_012148396v1     13471125 217 +  16154928 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=3567343.000000
s hg38.chr15_KI270851v1_alt    178230 277 +    263054 TGTTA-CTTTAGTTTTTCCCACCATTTCTGA--ATTTTTGTTTACTTTTCCTTTCTAGCTTTTGTCTGGTCCTCTGAGCCCCAGTGAGAGTTTCCTGAGGTACCTCACCCTTCCACAAGACAACAGGCTTGCCATTGATCTGCAACAAATGGCGGTTGTTGTCATGGCCCATTTAGACCGTCTGGCTACACCCTGTAGATGCCTCCTCTGTGTAGCTCTCCGACGTCTCATAAG--GTGTGTGCAAGAACCGTG----TTCTCCATGTGT-TTTGTAGCTAGTACCA
s panTro5.chr15              73762386 276 -  83230942 TGTTAACTTTAATTTTTCCCACCATTTCCGA--ATGTTTGTTTACTTTTCCTTTCTAGCTTTTGTCTGGCCCTCTGAGCCCCAATGAGAGTTTCCTGAGGTACCTCACCCTTCCACAAGACAACGAGCTTGCCATTGATCTGCGACAAACGGCGGTTGTTGTCATGGCCCATTTAGACCGTCTGGCTACGCCCTGTA--TGCCTCCACTGTGTAGCTCTCCGACGTCTCATAAG--GTGTGTGCAAGAACCGTG----TTCTCCATGTGT-TTTGTAGCTAGTACCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74065851 276 -  99763055 TGTTAACTTTAATTTTTCCCACCATTTCCGA--ATGTTTGTTTACTTTTCCTTTCTAGCTTTTGTCTGGCCCTCTGAGCCCCAATGAGAGTTTCCTGAGGTACCTCACCCTTCCACAAGACAACGAGCTTGCCATTGATCTGCGACAAACGGCGGTTGTTGTCATGGCCCATTTAGACCGTCTGGCTACGCCTTGTA--TGCCTCCACTGTGTAGCTCTCCGACGTCTCATAAG--GTGTGTGCAAGAACCGTG----TACTCCATGTGT-TTTGTAGCTAGTACCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       114632 278 -    281578 TGTTAACTTTAATTTTTCCCACCATTTCCGA--ATGTTTGTTTACTTTTCCTTTCTAGCTTTTGTCTGGCCCTCTGAGCCCCAATGAGAGTTTCCTGAGGTACCTCACCCTTCCACAAGACAACGAGCTTGCCATTGATCTGCGACAAACGGCGGTTGTTGTCATGGCCCATTTAGACCGTCTGGCTACGCCCTGTA--TGCCTCCGCTGTGTAGCTCTCCGACATCTCATAAGGTGTGTGTGCAAGAACCGTG----TTCTCCATGTGT-TTTGTAGCTAGCACCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70973143 275 + 121039945 TGTTA-CTTTAATTTTTCCCACCATTTCCGA--ATGTTTGTTTACTTTTCCTTTCTAGCTTTTGTCTGGCCCTCTGAGCCCCAATGAGAGTTTCCTGAGGTACCTCACCCTTCCTCAAGACAACGAGCTTGCCATTGATCTGCGACAAACGGCGGTTGTTGTCATGGCCCATTTAGACCGTCTGGCTACGCCCTGTA--TGCCTCCGCTGTGTAGCTCTCCGACGTCTCATAAG--GTGTGTGCAAGAACCGTG----TTCTCCATGTGT-TTTGTAGCTAGTACCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164281845 265 - 169600520 TGTCA-CTTTAATT----------TTTCTGA--ATGTTTGTTTACTTTTCCTTTCTAGCTTTTGTCTGGTCCCCTGAGCCCCAACGAGAGTTTCCTGAGGTACCTCACCCTTCCACAAGACAACGAGCTTGCCATTGACCTGCGACAGACGGCGGTTGTCGTCATGGCCCACTTAGACCGTCTGGCTACGCCCTGTA--TGCCTCCGCTGTGCAGCTCTCCGACGTCTCATAAG--GTGTGTGAAAGAACCACG----TTCTCCTTGTGT-TTTGTGGCTAGTACCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165602763 265 - 171882078 TGTCA-CTTTAATT----------TTTCTGA--ATGTTTGTTTACTTTTCCTTTCTAGCTTTTGTCTGGTCCCCTGAGCCCCAACGAGAGTTTCCTGAGGTACCTCACCCTTCCACAAGACAACGAGCTTGCCATTGACCTGCGACAGACGGCGGTTGTCGTCATGGCCCACTTAGACCGTCTGGCTACGCCCTGTA--TGCCTCCGCTGTGCAGCTCTCCGACGTCTCATAAG--GTGTGTGCAAGAACCACG----TTCTCCTTGTGT-TTTGTGGCTAGTACCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449132 265 +   2379783 TGTCA-CTTTAATT----------TTTCTGA--ATGTTTGTTTACTTTTCCTTTCTAGCTTTTGTCTGGTCCCCTGAGCCCCAACGAGAGTTTCCTGAGGTACCTCACCCTTCCCCAAGACAGCGAGCTTGCCATTGACCTGCGACAGACGGCGGTTGTCGTCATGGCCCACTTAGACCGTCTGGCTACGCCCTGTA--TGCCTCCGCTGTGCAGCTCTCCGACGTCTCATAAG--GTGTGTGCAAGAACCACG----TTCTCCTTGTGT-TTTGTGGCTAGTACCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415029 265 +   4116138 TGTCA-CTTTAATT----------TTTCTGA--ATGTTTGTTTACTTTTCCTTTCTAGCTTTTGTCTGGTCCCCTGAGCCCCAACGAGAGTTTCCTGAGGTACCTCACTCTTCCACAAGACAACGAGCTTGCCATTGACCTGCGACAGACGGCGGTTGTCGTCATGGCCCACTTAGACCGTCTGGCTACGCCCTGTA--TGCCTCCGCTGTGCAGCTCTCCGACGTCTCATAAG--GTGTGTGCAAGAACCACG----TTCTCCATGTGT-TTTGTGGCTAGTACCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53846971 265 +  58131712 TGTCA-CTTTAATT----------TTTCTGA--ATGTTTGTTTACTTTTCCTTTCTAGCTTTTGTCTGGCCCCCTGAGCCCCAACGAGAGTTTCCTGAGGTACCTTACCCTTCCACAAGACAATGAGCTTGCCATTGACCTGCGACAGACGGCGGTTGTCGTCATGGCCCACTTAGACCGTCTGGCTACGCCCTGTA--TGCCTCCGCTGTGCAGCTCTCCGACGTCTCATAAG--GTGTGTGCAAGAACCACG----TTCTCCATGTGT-TTTGTGGCTAGTACCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462075 265 -   3636681 TGTCA-CTTTAATT----------TTTCTGA--ATGTTTGTTTACTTTTCCTTTCTAGCTTTTGTCTGGTCCCCTGAGCCCCAACGAGAGTTTCCTGAGGTACCTCACTCTTCCACAAGACAACGAGCTTGCCATTGACCTGCGACAGACGGCGGTTGTCGTCATGGCCCACTTAGACCGTCTGGCTACGCCCTGTA--TGCCTCCGCTGTGCAGCTCTCCGACGTCTCATAAA--GTGTGTGCAAGAACCACG----TTCTCCATGTGT-TTTGTGGCTAGTACCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       443628 265 -   4457520 TGTCA-CTTTAATT----------TTTCCGA--TTGTTTGTTTACTTTTCCTTTCTAGCTTTTGTCTGGCCCCCTGAGCCCCAACGAGAGTTTCCTGAGGTACCTCACCCTTCCGCAAGACAACGAGCTTGCCATTGATCTGCGACAGACGGCGGTTGTCGTCATGGCCCACTTAGACCGTCTGGCCACGCCCTGTA--TGCCTCCGCTGTGTAGCTCTCCGACGTCTCATAAG--GTGTGTGCAGGAACCACG----TTCTCCGTGTGT-TTTGTGGCTAGTACCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154475146 271 - 158406734 TATTA-CTTTAAATTTCCCCACCATTTCTGA--A----TGTTTACTTTTCCTTTCTAGCTTTTGTCTGGCCCTCTGAGCCCCAATGAGAGTTTCCTGAGGTACCTCACACTTCCGCAAGACAACGAGCTTGCCATTGATCTGCGGCAAACAGCGGTTGTCGTCATGGCCCATTTAGACCGCCTGGCCGCACCCTGTA--TGCCTCCGCTGTGTAGCTCTCCGACGTCCCATAAG--GTGTGTGCAAGAATAATG----TTCTGCGTGTGT-TTTGCAGCTAGTACCA
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       332202 273 -   2086007 TGTTA-CTTTAAATTTCCCCACCATTTCTGA--AAGTTTGTTTACTTTTCCTTTCTAGCTTTTGTCTGGCCCTCTGAGCCCCAATGAGAGTTTCCTGAGGTACCTCACCCTTCCGCAAGACAACGAGCTTGCCATTGATCTGCGGCAAACAGCGGTTGTTGTCATGGCCCATTTAGACCGCCTAGCCACGCCCTGTA--TGCCTCCGCTGTGCAGCTCTCCGGCGTCCCATAAG--GTGTGTGCAAGAACAGTG----TTCTGC--GTGT-TTTGCAGCTAGGGCCG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       397298 274 +   3831555 TGTTA-CTTTAAATTTCCCCACCATTTCTGA--ATGTTTGTTTACTTTTCCTTTCCAGCTTTTGTCTGGCCCTCTGAGCCCCAATGAGAGTTTCCTGAGGTACCTCACCCTTCCGCAAGATAACGAGCTTGCCATTGATCTGCGGCAAACAGCGGTTGTCGTCATGGCCCATTTAGACCGCCTGGCCACGCCCTGTA--TGCCTCCGCTGTGCAGCTCTCCGACGTCCCATAAG--GTGTGCGCGAGAACAGTG----TTCTGCGTGTG--TTTGCAGCTAGTACCT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116239455 275 + 116334831 TGTTA-CTTTAGTTTTTCCCACCATTTCTGA--ATGTTTGTTTACTTTTCTTGTCTAGCTTTTGTCTGGCCCACTGAGCCCCAATGAGAGTTTCCTGCGGTACCTTACTCTTCCACAAGACAATGAGCTCGCCATTGATTTGCGGCAAACAGCTGTTGTTGTCATGGCCCATTTAGACCGCCTGGCTACACCCTGTA--TGCCTCCTCTGTGTAGCTCTCCGACGTCGCATAAG--GTATGTGGGAGAACAGTG----TTCTTCACATGT-TCTGTAGTTAGTACCA
i micMur3.chr9              I 216 I 145
s proCoq1.NW_012148396v1     13471342 277 +  16154928 TGTTA-CTTTAGTTTTTCCCACCATTTCTGAATATGTTTGTTTACTTTTCTTGTGTAGCTTTTGTCTGGCCCACTGAGCCCCAATGAGAGTTTCCTGCGGTACCTTACTCTTCCACAAGACAATGAGCTTGCCATTGATTTGCGGCAAACAGCTGTTGTTGTCATGGCCCATTTAGACCGCCTGGCTACACCCTGTA--TGCCTCCTCTGTGTAGCTCTCCGACGTCGCATAAG--GTATGTGGGAAAATGGTG----TTCTTCACGTGT-TCTGTAGTTACTACCA
i proCoq1.NW_012148396v1    I 217 C 0
s otoGar3.GL873689             408497 276 +   3845361 TGTTA-CTTTAGTTTTTCCCACCATTTATGAATATGTTTGTTTACTTTTC--ATCTAGCTTTTGTCTGGCCCCCTAAGTCCCAATGAGAGTTTCCTGCGCTACCTTACCCTTCCACAAGACAACGAGCTCGCCATTGATTTGCGGCAGACAGCAGTTATTGTCATGGCCCATTTAGACCGCCTGGCCACGCCCTGTA--TGCCACCGCTGTGTAGCTCTCCAACGTCGCATAAG--GTACGTGGAGGAACAGTG----TTCTTCCTGTGTGTCTGCAGTGGGTGCCA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59984786 279 -  91889043 TGTTA-CTTTAATTTTTCCACCATTCTCAAG--AAGCCTGTTTACTTTTCTTCTGTAGCTTTTGTCTGGTCCTCTGAGCCCCAATGAGAGTTTCCTGAGGTACCTTACTCTTCCACAAGACAATGAGCTCGCCATTGACTTAAGACAAACTGCAGTTGTTGTCATGGCCCATTTAGACCGCCTGGCTACTCCCTGTA--TGCCACCTCTGTGTAGCTCACCAACATCTCATAAG--GTACGTGTGATAGCAGTGTTTCTTCTTTGTATGT-TGTATAGATAGTAGCA
i canFam3.chr3              C 0 C 0
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=477248.000000
s hg38.chr15_KI270851v1_alt    178507  60 +    263054 CTTGTAGGTTCTCATCC-----------------TGGGCCC----GTGT----------------GGAGAC-----------TTGTTTTTTCTGGTATTGGTAGGGGG
s panTro5.chr15              73762662  60 -  83230942 CCTGTAGGTTCTCATCC-----------------TGGGCCC----GTGT----------------GGAGAC-----------TTGCTTTTTCTGGTATTGGTAGGGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74066127  60 -  99763055 CCTGTAGGTTCTCATCC-----------------TGGGCCC----GTGT----------------GGAGAC-----------TTGCTTTTTCTGGTATTGGTAGGGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       114910  59 -    281578 CTTGTAGGTTCTCATCC-----------------TGGGCCT----GTGT----------------GGAGAC-----------TTG-TTTTTCTGGTATTGGTAGGGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70973418  60 + 121039945 CTTCTAGGTTCTCATGC-----------------TGGGCCC----GTGT----------------GGAGAC-----------TTGCTTTTTCTGGTATTGATGGGGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164282110  60 - 169600520 CTTCTAGGTTGTCATCC-----------------TGGGCCC----GTGT----------------GGAGAC-----------TTGCGTTTTCTGGTGTTGATGGGGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603028  60 - 171882078 CTTCTAGGTTGTCATCC-----------------TGGGCCC----GTGT----------------GGAGAC-----------TTGCGTTTTCTGGTGTTGATGGGGGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449397  60 +   2379783 CTTCTAGGTTGTCATCC-----------------TGGGCCC----GTGT----------------GGAGAC-----------TTGCGTTTTCTGGTGTTGATGGGGGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415294  60 +   4116138 CCTCTAGGTTGTCATCC-----------------TGGGCCC----GTGT----------------GGAGAC-----------TTGCGTTTTCTGGTGTTGATGGGGGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847236  60 +  58131712 CTTCTAGGTTGTCATCC-----------------TGGGCCC----GTGT----------------GGAGAC-----------TTGCGTTTTCTGGTGTTGATGGGGGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462340  60 -   3636681 CTTCTAGGTTGTCATCC-----------------TGGGCCC----GTGT----------------GGAGAC-----------TTGCGTTTTCTGGTGTTGATGGGGGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       443893  60 -   4457520 CTTCTAGGTTCTCATCC-----------------TGGGCCC----GTGT----------------GGAGAC-----------TTGCGTTTTCTGGTGTTGATGAGGGG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154475417  59 - 158406734 CTGCCAGGTTCTCATCC-----------------TGGGCCC----GTGT----------------GGAGAC-----------TCACTTTTTCTGGTATTGGGC-GGGG
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       332475  59 -   2086007 CCGCCGGGTTCTCATCC-----------------TGGGCCC----CTGT----------------GGAGAC-----------TCGCGTTTTCTGGTATTGGTC-GGGG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       397572  59 +   3831555 CTGCCGGGTTCTCATCC-----------------TGGGCCT----GTGT----------------GGAGAC-----------GTGCTTTTGCTGGTATTGGTC-GAGG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13471619  48 +  16154928 TGCCTAGATTCTCATTC-----------------TCTGCAT----GTGT----------------GGAGAC-----------------TTATTGGTGGTGTC------
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             408773 102 +   3845361 CTCCTAGGTTCTCGTTCTGGGATTGGTGGTGGCTTCTGCCTTACAGttttttttttttttttttgggagacagagtctcaagctatcatccttggtagagtg------
i otoGar3.GL873689          C 0 I 186
s canFam3.chr3               59985065  59 -  91889043 CTCTTAGATTCTCACTC-----------------TGTGCTG----ATAT----------------GGAGAC-----------TCAGTTTCTCTGGTGTTGGGGGTAG-
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116239730 145 + 116334831 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=175209.000000
s hg38.chr15_KI270851v1_alt    178567 23 +    263054 AGCTGGCC--------------------------------------TGTGG-TTTTTAAACG-
s panTro5.chr15              73762722 23 -  83230942 AGCTGGCC--------------------------------------TGTGG-TTTTTAAACA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74066187 23 -  99763055 AGCTGGCC--------------------------------------TGTGG-TTTTTAAACA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       114969 23 -    281578 AGCTGGCC--------------------------------------TGTGG-TTTTTAAACA-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70973478 23 + 121039945 AGCTGGCT--------------------------------------TGTGG-TTTTTAAACG-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164282170 22 - 169600520 AGCTGGCT--------------------------------------TGTGG--TTTTAAATG-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603088 22 - 171882078 AGCTGGCT--------------------------------------TGTGG--TTTTAAATG-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449457 22 +   2379783 ACCTGGCT--------------------------------------TGTGG--TTTTAAATG-
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415354 22 +   4116138 AGCTGGCC--------------------------------------TGTGG--TTTTAAATG-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847296 22 +  58131712 AGCTGGCT--------------------------------------TGTGG--TTTTAAATG-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462400 22 -   3636681 AGCTGGCC--------------------------------------TGTGG--TTTTAAATG-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       443953 22 -   4457520 AGCTGGCT--------------------------------------TGTGA--TTTTAAACG-
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154475476 23 - 158406734 AGCTGGCT--------------------------------------TGTGT-TTTTCAAATG-
i calJac3.chr6              C 0 I 274
s cebCap1.NW_016107707v1       332534 23 -   2086007 AGCTGGCT--------------------------------------TGTGT-TTTTTAAACG-
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       397631 23 +   3831555 AGCTGGCT--------------------------------------TGTGT-TTTTTAAACG-
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13471667 23 +  16154928 ATCTGGCT--------------------------------------TAAAG-TTTTTAAACA-
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             409061 61 +   3845361 atatggctagcgcccttacccactgagctacGAGTGCCACCCTGGCTTAAG-TTTTTAAACA-
i otoGar3.GL873689          I 186 C 0
s canFam3.chr3               59985124 25 -  91889043 AGCTGGCT--------------------------------------TATAGCTTTTTAAATCT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116239730 145 + 116334831 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=7279.000000
s hg38.chr15_KI270851v1_alt    178590 1 +    263054 T
s panTro5.chr15              73762745 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74066210 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       114992 1 -    281578 C
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70973501 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164282192 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603110 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449479 1 +   2379783 T
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415376 1 +   4116138 T
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847318 1 +  58131712 T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462422 1 -   3636681 T
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       443975 1 -   4457520 T
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       332557 1 -   2086007 T
i cebCap1.NW_016107707v1    C 0 I 259
s aotNan1.NW_018503298v1       397654 1 +   3831555 T
i aotNan1.NW_018503298v1    C 0 I 257
s proCoq1.NW_012148396v1     13471690 1 +  16154928 T
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             409122 1 +   3845361 T
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59985149 1 -  91889043 T
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116239730 145 + 116334831 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154475499 274 - 158406734 I

a score=70267.000000
s hg38.chr15_KI270851v1_alt    178591 8 +    263054 GTTTGCAG
s panTro5.chr15              73762746 8 -  83230942 GTTTGCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74066211 8 -  99763055 GTTTGCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       114993 8 -    281578 GTTTGCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70973502 8 + 121039945 GTTTGCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164282193 8 - 169600520 GTTTGCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603111 8 - 171882078 GTTTGCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449480 8 +   2379783 GTTTGCAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415377 8 +   4116138 GTTTGCAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847319 8 +  58131712 GTTTGCAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462423 8 -   3636681 GTTTGCAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       443976 8 -   4457520 GTTTGCAG
i colAng1.NW_012115278v1    C 0 C 0
s proCoq1.NW_012148396v1     13471691 8 +  16154928 GTTTGCAG
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             409123 8 +   3845361 GTTTGTAG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59985150 8 -  91889043 GTATATGG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116239730 145 + 116334831 I
e aotNan1.NW_018503298v1       397655 257 +   3831555 I
e cebCap1.NW_016107707v1       332558 259 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154475499 274 - 158406734 I

a score=24752.000000
s hg38.chr15_KI270851v1_alt    178599 2 +    263054 TT
s panTro5.chr15              73762754 2 -  83230942 TT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74066219 2 -  99763055 TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       115001 2 -    281578 TT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70973510 2 + 121039945 TT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164282201 2 - 169600520 TT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603119 2 - 171882078 TT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449488 2 +   2379783 TT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415385 2 +   4116138 TT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847327 2 +  58131712 TT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462431 2 -   3636681 TT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       443984 2 -   4457520 TT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154475773 2 - 158406734 TT
i calJac3.chr6              I 274 C 0
s aotNan1.NW_018503298v1       397912 2 +   3831555 TT
i aotNan1.NW_018503298v1    I 257 C 0
s proCoq1.NW_012148396v1     13471699 2 +  16154928 TT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             409131 2 +   3845361 TT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59985158 2 -  91889043 TT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116239730 145 + 116334831 I
e cebCap1.NW_016107707v1       332558 259 -   2086007 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=782442.000000
s hg38.chr15_KI270851v1_alt    178601 77 +    263054 GAAGGTGTTATCCGTGTTGAGAGTGAG-TGATGAGCAAGCTGAGGCGCACA-GGCCTGGCGACCCAACCTGGGGGCCCG
s panTro5.chr15              73762756 77 -  83230942 GAAGGTGTTATCCGTGTTGAGAGTGAG-TGATGAGCAAGCTGAGGCGCACA-GGCCTGGCGACCCAACCTGGGGGCCCG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74066221 77 -  99763055 GAAGGTGTTATCCGTGTTGAGAGTGAG-TGATGAGCAAGCTGAGGCGCACA-GGCCTGGCGACCCAACCTGGGGGCCCG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       115003 77 -    281578 GAAAGTGTTATCCGTGTTGAGAGTGAG-TGATGAGCAAGCTGAGGCGTACA-GGCCTGGCGACCCAACCTGGGGGCCCG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70973512 77 + 121039945 GATGGTGTTATCCATGTTGAGAGTGAA-TGATGAGCAAGCTGAGGCACACA-GGACTGGGGACCCAACCTGGGGGCCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164282203 77 - 169600520 GAAGGTGTTATCCGTGTTGAGAGTGAG-TGATGAGCAAGCTGAGGTGCACA-GGCCTGGGGACCCAATCTGGGGGCCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603121 77 - 171882078 GAAGGTGTTATCCGTGTTGAGAGTGAG-TGATGAGCAAGCTGAGGTGCACA-GGCCTGGGGACCCAATCTGGGGGCCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449490 77 +   2379783 GAAGGTGTTATCCGTGTTGAGAGTGAG-TGATGAGCAAGCTGAGGTGCACA-GGCCTGGGGACCCAATCTGGGGGCCCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415387 76 +   4116138 GAAGGTGTTATCCGTGTTGAGAGTGAG-TGATGAGCAAGCTGAGGTGCACA-GGCCTGGGGACCCAATCTGGGGG-CCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847329 77 +  58131712 GAAGGTGTTATCCGTGTTGAGAGTGAG-TGATGAGCAAGCTGAGGTGCACA-GGCCTGGGGACCCAATCTGGGGGCCCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462433 76 -   3636681 GAAGGTGTTATCCGTGTTGAGAGTGAG-TGATGAGCAAGCTGAGGTGCACA-GGCCTGGGGACCCAATCTGGGGG-CCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       443986 78 -   4457520 GAAGGTGTTATCCATGTTGAGAGTGAGTTGGTGAGCAAGCTGAGGTGCACA-GGCCTGGGGACCCAATCTGGGGGCCCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154475775 77 - 158406734 TAAGGTGTTACCAGTGTTGAGAGTGAG-TGATGACCAGGCTGAGGCGCACA-GGCCTGGGGACCCACCCTGGGGGTGCA
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       332817 77 -   2086007 GAAGGTGTTACCAATGTTGAGAGTGAG-TGATGAGCAGGCTGAGGTGCACA-GGCCTGGGGACCCACCCTGGGGGCACA
i cebCap1.NW_016107707v1    I 259 C 0
s aotNan1.NW_018503298v1       397914 77 +   3831555 GAAGGTGTTACCAATGTTGAGAGTGAG-TGGTGAGCAGGCTGAGGCGCACA-GGCCTGGGGACCCACCCTGGGGGCGCA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13471701 64 +  16154928 CAAGGTGTTGCC-------------AG-TGGTGAGTAAGCCGAGGTGCACAGGGCCCAAGGACCCAATCTGGGTCCCC-
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             409133 64 +   3845361 TAAGGTGTTGCC-------------TG-TGGTGAGCAAGCTGAGATGCACAAGGCCTAAGGACCCACCCTCAGTCTCA-
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59985160 77 -  91889043 TAAGGTGTTGTCAATGATCAGAATGAG-TGATGAGCAAGCTGAGGTGCACAGGGATTTAGGATCCAATCCATTGTCCC-
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116239730 145 + 116334831 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=432691.000000
s hg38.chr15_KI270851v1_alt    178678 36 +    263054 GG-TTCCAGGTTCAGGTGGCACAGCCCCAGAGAGCTC
s panTro5.chr15              73762833 36 -  83230942 GG-TTCCAGGTTCAGGTGGCACAGCCCCAGAGAGCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74066298 36 -  99763055 GG-TTCCAGGTTCAGGTGGCACAGCCCCAGAGAGCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       115080 36 -    281578 GG-TTCTAGGTTCAGGTGGCACAGCCCCAGAGAGCTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70973589 36 + 121039945 GG-TTCCAGGTTCAGGTGGCAGAGCCCCAGAGGGCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164282280 36 - 169600520 GG-TTCCAGGTTCAGGTGGCACAGCCCCAGAGAGCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603198 36 - 171882078 GG-TTCCAGGTTCAGGTGGCACAGCCCCAGAGAGCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449567 36 +   2379783 GG-TTCCAGGTTCAGGTGGCACAGCCCCAGAGAGCTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415463 36 +   4116138 GG-TTCTAGGTTCAGGTGGCACAGCCCCAGAGAGCTC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847406 36 +  58131712 GG-TTCCAGGTTCAGGTGGCACAGCCCCAGAGAGCTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462509 36 -   3636681 GG-TTCTAGGTTCAGGTGGCACAGCCCCAGAAATCTC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       444064 36 -   4457520 GG-TTCCAGGTTCAGGTGGCACAACCCCAGAGAGCTC
i colAng1.NW_012115278v1    C 0 I 1296
s calJac3.chr6              154475852 37 - 158406734 GGTTTCCAGGTTCAGCTGGCACAGCTGGAGAGAGCTC
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       332894 37 -   2086007 GGTTTCCAGGTTCAGCTGGCACAGCCGGAGAGAGCTC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       397991 37 +   3831555 GGTTTCCAGGTTCAGCTGGCACAGCCAGAGAGAGCTC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116239875 36 + 116334831 GG-TTCCAGATTCAGGAGACACAGCCCCAGAGAGCTC
i micMur3.chr9              I 145 C 0
s proCoq1.NW_012148396v1     13471765 36 +  16154928 GG-TTCCAGGTTCAGGAGGCACATCCCCAGAGAGCTC
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             409197 34 +   3845361 -A-GTTGAGATTTAGGAGG-GCGTCCCTGGAGAGCTT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59985237 36 -  91889043 AG-TTCTAGAATCAGGAGATGTGTCCCCAGAGAGCTC
i canFam3.chr3              C 0 C 0
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=329255.000000
s hg38.chr15_KI270851v1_alt    178714 32 +    263054 CCCTTTATC--C--AC--AGCCCCAGGCCCTCCCACCT
s panTro5.chr15              73762869 32 -  83230942 CCCTTTATC--C--AC--AGCCCCAGGCCCTCCCACCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74066334 32 -  99763055 CCCTTTATC--C--AC--AGCCCCAGGCCCTCCCACCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       115116 32 -    281578 CCCTTTATC--C--AC--AGCCCCAGGCCCTCCCACCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70973625 32 + 121039945 CCCTTTATC--C--AC--AGCCCCAGGCCCTCCCACCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164282316 32 - 169600520 CCCTTTATC--C--AC--AGCCCCAGGCCCTCCCACCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603234 32 - 171882078 CCCTTTATC--C--AC--AGCCCCAGGCCCTCCCACCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449603 32 +   2379783 CCCTTTATC--C--AC--AGCCCCAGGCCCTCCCACCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415499 32 +   4116138 CCCTTTATC--C--AC--AGCCCCAGGCCCTCCCACCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847442 32 +  58131712 CCCTTTATC--C--AC--AGCCCCAGGCCCTCCCACCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462545 32 -   3636681 CCCTTTATC--C--AC--AGCCCCAGGCCCTCCCACCT
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154475889 34 - 158406734 CCCTTTATC--C--ACATAGCCTCAGGCCCTCCCACCT
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       332931 34 -   2086007 CCCTTGATC--C--ACATAGCCCCAGGCCCACCCACCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398028 34 +   3831555 CCCTTTATC--C--ACATAGCCCCAGGCCCTCCCCGCT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116239911 33 + 116334831 ACCCTTACC-AC--AC--AGCCACAGGCCATCTCACCT
i micMur3.chr9              C 0 I 25
s proCoq1.NW_012148396v1     13471801 32 +  16154928 ACCCTTATC--C--TT--ATCTGCAGGCCATCCCACCT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             409231 33 +   3845361 GCCCTTATCCAC--AC--AGCTCTAGG-CATCCCACCT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59985273 34 -  91889043 TCCTTTATA--CAAAC--AACTGCATGCCATTCTGCCT
i canFam3.chr3              C 0 C 0
e colAng1.NW_012115278v1       444100 1296 -   4457520 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=220091.000000
s hg38.chr15_KI270851v1_alt    178746 28 +    263054 TCTGCA-GGGGGTTCCACAGCCTTCTTCA
s panTro5.chr15              73762901 28 -  83230942 TCTGCA-GGGGGTTCCACAGCCTTCTTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74066366 28 -  99763055 TCTGCA-GGGGGTTCCACAGCCTTCTTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       115148 28 -    281578 TCTGCA-GGGGGTTCCACAGCCTTCTTCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70973657 28 + 121039945 TCTGCA-GGGGCTTCCACAGTCATCTTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164282348 28 - 169600520 TCTGCA-GGGGGTTCCACAGCCTACTTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603266 28 - 171882078 TCTGCA-GGGGGTTCCACAGCCTACTTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449635 28 +   2379783 TCTGCA-GGGGGTTCCACAGCCTTCTTTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415531 28 +   4116138 TCTGCA-GGGGGTTCCACAGCCTTCTTTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847474 28 +  58131712 TCTGCA-GGGGGTTCCACAGCCTTCTTTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462577 28 -   3636681 TCTGCA-GGGGGTTCCACAGCCTTCTTTA
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154475923 20 - 158406734 TCCACG-GGGGCTTCC--------TGTCA
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       332965 28 -   2086007 TCCGCA-GGGGCTTCCACAGCCTTCTTTC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398062 25 +   3831555 TCCGAA-GGGGCTTCCACAGC---CTTTC
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13471833 28 +  16154928 TCTGCA-GGGAGGTCCAGAGCCTCTTTTG
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             409264 28 +   3845361 TCTGCA-GGGAGGCCTGGAGCCTCTTCTG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59985307 29 -  91889043 TCCTCACAGAGGTTCCAGTGCCTTTTTTG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116239944 25 + 116334831 I
e colAng1.NW_012115278v1       444100 1296 -   4457520 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=526907.000000
s hg38.chr15_KI270851v1_alt    178774 51 +    263054 ---------TACTCTGAACGCAGGCTGTCTTAGTATGTCATGCTGGTTATAGTAGTGACA
s panTro5.chr15              73762929 51 -  83230942 ---------TACTCTGAACGCGGACTGTCTTAGTATGTAATGCTGGTGATAGTAGTGACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74066394 51 -  99763055 ---------TACTCTGAACGCGGACTGTCTTAGTATGTAATGCTGGTGATAGTAGTGACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       115176 51 -    281578 ---------TACTCTGAACGCGGACTGTCTTAGTATGTAATGCTGGTGATAGTAGTGACA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70973685 51 + 121039945 ---------TACTCTGAACGTGGGCTGTCTTAGTATGTAATGCTGATTATAGTAGTGACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164282376 51 - 169600520 ---------TACTCTGAATGCAGACTGTCTTAGTATGTAATGCTGGTTATGGTAGTGACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603294 51 - 171882078 ---------TACTCTGAATGCAGACTGTCTTAGTATGTAATGCTGGTTATGGTAGTGACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449663 51 +   2379783 ---------TACTCTGAATGCAGACTGTCTTAGTATGTAATGCTGGTTATGGTAGTGACA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415559 51 +   4116138 ---------TACTCTGAATGCAGACTGTCTTAGTATGTAATGCTGGTTATGGTAGTGACA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847502 51 +  58131712 ---------TACTCTGAATGCAGACTGTCTTAGTATGTAATGCTGGTTATGGTAGTGACA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462605 51 -   3636681 ---------TACTCTGAATGCAGACTGTCTTAGTATGTAATGCTGGTTATGGTAGTGACA
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154475943 51 - 158406734 ---------TAGTCTGAACATGGGCTGTCTTAGTATGTAATGCTGCTTATAGCAGGGACA
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       332993 51 -   2086007 ---------TAGTCTGAACACGGGCTGCCTTAGTATGTAATGCTGCGTATAGCAGTGACA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398087 51 +   3831555 ---------TAGTCTGAACATGGGCTGTCTTAGTTTGTAATGCTGCTTATAGCAGTGACA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116239969 51 + 116334831 ---------TACTCTGAACATGGACTGTCTTAGTATGTAATGCTGGTTATGGTACTGACA
i micMur3.chr9              I 25 C 0
s proCoq1.NW_012148396v1     13471861 51 +  16154928 ---------TACTCTGAACATGGGCTGTCTTAGTATGTAATGCTGGTTATGGTACTGACA
i proCoq1.NW_012148396v1    C 0 I 564
s otoGar3.GL873689             409292 50 +   3845361 ---------TGCCTTGAGCATGGGCTGTCTTTGTA-GGAATGCAAGTTGTGGTACTGACT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59985336 53 -  91889043 TAAAGTAGGGGCTCAGACCATGAACTGTCTTG-------ATGCTGCTAAGAGCAGTGATA
i canFam3.chr3              C 0 C 0
e colAng1.NW_012115278v1       444100 1296 -   4457520 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=43230.000000
s hg38.chr15_KI270851v1_alt    178825 5 +    263054 GTATA-
s panTro5.chr15              73762980 5 -  83230942 Gtata-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74066445 5 -  99763055 Gtata-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       115227 5 -    281578 Gtata-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70973736 5 + 121039945 GTATA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164282427 5 - 169600520 GTATA-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603345 5 - 171882078 GTATA-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449714 5 +   2379783 GTATA-
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415610 5 +   4116138 GTATA-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847553 5 +  58131712 GTATA-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462656 5 -   3636681 GTATA-
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154475994 5 - 158406734 GTATA-
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333044 5 -   2086007 GTGTA-
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398138 5 +   3831555 GTATA-
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116240020 5 + 116334831 Ctata-
i micMur3.chr9              C 0 C 0
s otoGar3.GL873689             409342 5 +   3845361 GTACA-
i otoGar3.GL873689          C 0 I 1496
s canFam3.chr3               59985389 4 -  91889043 --ACAC
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13471912 564 +  16154928 I
e colAng1.NW_012115278v1       444100 1296 -   4457520 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=17416.000000
s hg38.chr15_KI270851v1_alt    178830 2 +    263054 AT
s panTro5.chr15              73762985 2 -  83230942 at
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74066450 2 -  99763055 at
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       115232 2 -    281578 at
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70973741 2 + 121039945 AT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164282432 2 - 169600520 AT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603350 2 - 171882078 AT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449719 2 +   2379783 AT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415615 2 +   4116138 AT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847558 2 +  58131712 AT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462661 2 -   3636681 AT
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154475999 2 - 158406734 AT
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333049 2 -   2086007 AT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398143 2 +   3831555 AT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116240025 1 + 116334831 -t
i micMur3.chr9              C 0 I 12
e proCoq1.NW_012148396v1     13471912 564 +  16154928 I
e canFam3.chr3               59985393 0 -  91889043 C
e otoGar3.GL873689             409347 1496 +   3845361 I
e colAng1.NW_012115278v1       444100 1296 -   4457520 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=59958.000000
s hg38.chr15_KI270851v1_alt    178832 12 +    263054 TATG-TATTATAT
s panTro5.chr15              73762987 12 -  83230942 tata-tgttatat
i panTro5.chr15             C 0 I 118
s panPan2.chr15              74066452 12 -  99763055 tata-tgttatat
i panPan2.chr15             C 0 I 125
s gorGor5.CYUI01000141v1       115234 12 -    281578 tata-tgttatat
i gorGor5.CYUI01000141v1    C 0 I 153
s nomLeu3.chr6               70973743 12 + 121039945 tata-tattatat
i nomLeu3.chr6              C 0 I 144
s rheMac8.chr7              164282434 12 - 169600520 TCTA-TATTCTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603352 12 - 171882078 TCTA-TATTCTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449721 13 +   2379783 TCTATTATTCTAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415617 12 +   4116138 TCTA-TATTCCAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847560 12 +  58131712 TCTA-TATTCTAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462663 12 -   3636681 TCTA-TATTCTAT
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154476001 12 - 158406734 TATA-TATCATAT
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333051 12 -   2086007 TATA-TATCGTGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398145 11 +   3831555 TATA--ATCATAT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116240038 12 + 116334831 tatg-tattatat
i micMur3.chr9              I 12 I 4
s otoGar3.GL873689             410843  7 +   3845361 TATG------TAC
i otoGar3.GL873689          I 1496 I 4
e proCoq1.NW_012148396v1     13471912 564 +  16154928 I
e canFam3.chr3               59985393  0 -  91889043 C
e colAng1.NW_012115278v1       444100 1296 -   4457520 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=643549.000000
s hg38.chr15_KI270851v1_alt    178844 135 +    263054 CTCTTATGTAATAGTAATGGTA------GTGATTTGCATGTGTGGAGCACCTGTAGGGTGCAGGCCCGCTGAGGACCTCATGCACGCTGTTG---TATCTCATTATGTCAATGAGAAAACTGCCTTTGGGA----ATGGTAGTGAACT
s panPan2.chr15              25893085 141 +  99763055 CTGTTACATAATAGTAATGGTAATAATAGTGATTTGCGTGTGTGGAGCACCTGTAGGGTGCAGGCCCGCTGAGGACCTCATGCACGCTGTTG---TATCTCATTATGTCAATGAGAAAACTGCCTTTGGGA----ATGGTAGTGAACT
i panPan2.chr15             I 16210 C 0
s rheMac8.chr7              164282446 141 - 169600520 CTGTTATGTAATAGTAATGGTAATAGTAGTGATTTGCGTGTGTGGAGCACCTGTAGGGTGCAGGCCCGCTGAGGACCTCATGCACGCTATTG---TGGATCACTATGTCAATGATAAAACTGCCTTTGGGA----ATGGTAGTGAAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603364 141 - 171882078 CTGTTATGTAATAGTAATGGTAATAGTAGTGATTTGCGTGTGTGGAGCACCTGTAGGGTGCAGGCCCGCTGAGGACCTCATGCACGCTATTG---TGGATCACTATGTCAATGATAAAACTGCCTTTGGGA----ATGGTAGTGAACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449734 141 +   2379783 CTGTTATGTAATAGTAATGGTAATAGTAGTGATTTGCGTGTGTGGAGCACCTGTAGGGTGCAGGCCCGCTGAGGACCTCATGCACGCTATTG---TGGATCACTATGTCAATGATAAAACTGCCTTTGGGA----ATGGTAGTGAACT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415629 141 +   4116138 CTGTTATGTAATAGTAATGGTAATAGTAGTGATTTGCGTGTGTGGAGCACCTGTAGGGTGCAGGCCCGCTGAGGACCTCATGCACGCTATTG---TGGATCACTGTGTCAATGATAAAACTGCCTTTGGGA----ATGGTAGTGAACT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847572 141 +  58131712 CTGTTATGTAATAGTAATGGTAATAGTAGTGATTTGCGTGTGTGGAGCACCTGTAGGGTGCAGGCCTGCTGAGGACCTCATGCACGCTGTTG---TGGATCATTATGTCAATGAGAAAACTGCCTTTGGGA----ATGGTAGTGAACT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462675 141 -   3636681 CTGTTATGTAATAGTAATGGTAATAGTAGTGATTTGCGTGTGTGGAGCACCTGTAGGGTGCAGGCCCGCTGAGGACCTCATGCACGCTATTG---TGGATCACTATGTCAATGATAAAACTGCCTTTGGGA----ATGGTAGTGAACT
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154476013 140 - 158406734 CTGTTCTGTAATAGTAATGGTCAGAGTAGTAATTTGCGTGTGTGGAGCACCAGTGAGGTGCATGCTCACTGAGGACCTCA-GCATACTGTTG---TAGCTCATTATATCGGTGAGAAAACTGCAGTTGGGA----ATAGTAGTGAACT
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333063 124 -   2086007 CTGTTCTGTGATAGTAATGGTC----------------TGTGTGGAGCACCAGTGAGGTGCACGCTCGCTGAGGATCTCA-GCATGCCTTTG---TAGCTCATTATGTCGCTGAGAAAACTGCAGTTGGAA----ATAGTAGTGAGCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398156 139 +   3831555 CTGTTCTGTAATAGTAGTGGTC-AGGTAGTAATTTGCGTGTGTGGAGCACCAGTGACGTGCATGCTCACTGAGGACCTCA-GTGTGCTGTTG---TAGCTCATTATGTCGGTGAGAAAACTGCAGTTGGGA----GTACTAGTGAACT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116240054 131 + 116334831 -------------GTGATGGTAATAGGAGTGGTCTACGTGGGTGGAGAGCCTTTGGAGTGTAGGCCCACTGAGGACCTCACACATGCTGTGGTGTCTGATCATTGTGTCAATGAGAAAACTGCCGTTTGAG----ATGGTAGTGGACT
i micMur3.chr9              I 4 I 1078
s otoGar3.GL873689             410854  88 +   3845361 -------------ATGATGGTAATAATAGTGGTCTATGTGTGCAGAGAGCCTTTGG-----GTGCTCACTAAGGACCTCATA-------------TTCCCCCATGTGTTCATGG------------CTGGG-----------------
i otoGar3.GL873689          I 4 C 0
s canFam3.chr3               59985393 111 -  91889043 -----------------------------TAGTCCACATGTATGAAGAGCC--TACCATGCAGGCCCCTTGAGGACTTCCCACATGTAGTTG---CATCTGATCATCACAATGATCAGGGGGA---TGGGATGGGATGGCAGTGgatt
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13471912 564 +  16154928 I
e nomLeu3.chr6               70973755 144 + 121039945 I
e panTro5.chr15              73762999 118 -  83230942 I
e gorGor5.CYUI01000141v1       115246 153 -    281578 I
e colAng1.NW_012115278v1       444100 1296 -   4457520 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=195197.000000
s hg38.chr15_KI270851v1_alt    178979 44 +    263054 TTGCCAGTGCAGA-ACAGTAATCCTAGTTTTGAATCCAGATT-T-TT
s panPan2.chr15              25893226 44 +  99763055 TTGCCAGTGCAGA-ACAGTAATCCTAGTTTTGAATCCAGATT-T-TT
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164282587 44 - 169600520 TTCCTAGGGTAGA-ACAGTAATCCTAGTTTTGAATCCAGATT-T-TT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603505 45 - 171882078 TTCCTAGGGTAGA-ACAGTAATCCTAGTTTTGAATCCAGATTAT-TT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449875 44 +   2379783 TTCCTAGGGTAGA-ACAGTAATCCTAGTTTTGAATCCAGATT-T-TT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415770 44 +   4116138 TTCCTAGGGTAGA-ACAGTAATCCTAGTTTTGAATCCAGATT-T-TT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847713 44 +  58131712 TTGCTAGGGTAGA-ACAGTAATCCTAGTTTTGAATCCAGATT-T-TT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462816 44 -   3636681 TTCCTAGGGTAGA-ACAGTAATCCTAGTTTTGAATCCAGATT-T-TT
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154476153 45 - 158406734 TTGCCAGGGTATA-AGAGTCATCCTAGTTTTCAATCCAGATT-TCTC
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333187 45 -   2086007 TTGCCAGGGTATA-ACAGTCATCCTCGTTTTCAACTCAGATT-TCTC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398295 45 +   3831555 TTGCCAGGGTATA-ACAGCCATCCTAGTTTTCGATCCAGATT-TCTC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             410942 38 +   3845361 -------GTCATACAGAGTAATCCTAGTTTTAAACTCAGGTT-T-CT
i otoGar3.GL873689          C 0 I 310
s canFam3.chr3               59985504 43 -  91889043 tttccagggtcac-acaagaat-ttggatttgtatccaggtt-t-tc
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116240185 1078 + 116334831 I
e proCoq1.NW_012148396v1     13471912 564 +  16154928 I
e nomLeu3.chr6               70973755 144 + 121039945 I
e panTro5.chr15              73762999 118 -  83230942 I
e gorGor5.CYUI01000141v1       115246 153 -    281578 I
e colAng1.NW_012115278v1       444100 1296 -   4457520 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=241957.000000
s hg38.chr15_KI270851v1_alt    179023 39 +    263054 CTAACATTTTATTTCTAG-TATAAAGAGTATTT--ATTTTGT
s panPan2.chr15              25893270 39 +  99763055 CTAACATTTTATTTCTAG-TATGAAGAGTATTT--ATTTTGT
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164282631 39 - 169600520 TTAGCATTTTATTTCTAA-TATGAAGAGTattt--attttgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603550 39 - 171882078 TTAGCATTTTATTTCTAA-TATGAAGAGTattt--attttgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449919 39 +   2379783 TTAGCATTTTATTTCTAA-TATGAAGAGTattt--attttgt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415814 39 +   4116138 TTAACATTTTATTTCTAA-TATGAAGAGTattt--attttgt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847757 39 +  58131712 TTAACATTTTATTTCTAA-TATGAAGAGTATTT--ATTTTGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462860 39 -   3636681 TTAACATTTTATTTCTAA-TATGAAGAGTattt--attttgt
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154476198 35 - 158406734 TTAACATTTTATTGCTAA-TAGGAAGAG----T--GTTTTGT
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333232 35 -   2086007 TTAACATTTTATTGCTGA-TATGAAGAG----T--attttgt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398340 35 +   3831555 TTAACATTTTATTGCTAA-TATGAAGAG----T--ATTTTGT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116241263 39 + 116334831 ctaacttttAATTTTTAA-TATAAAGAGTATTT--ATTTTGT
i micMur3.chr9              I 1078 C 0
s proCoq1.NW_012148396v1     13472476 39 +  16154928 cTAACTTTTTATTTTTAA-TATAAAGAGTATTT--ATTTTGT
i proCoq1.NW_012148396v1    I 564 I 60
s otoGar3.GL873689             411290 40 +   3845361 cTAGCttttaatttttacttataaaaaatattc--attttat
i otoGar3.GL873689          I 310 C 0
s canFam3.chr3               59985547 40 -  91889043 ctaac-tTTTAAATTTAT-CATGATGTATATTTTAATTTCAT
i canFam3.chr3              C 0 C 0
e nomLeu3.chr6               70973755 144 + 121039945 I
e panTro5.chr15              73762999 118 -  83230942 I
e gorGor5.CYUI01000141v1       115246 153 -    281578 I
e colAng1.NW_012115278v1       444100 1296 -   4457520 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=16562.000000
s hg38.chr15_KI270851v1_alt    179062 2 +    263054 TT
s panPan2.chr15              25893309 2 +  99763055 TT
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164282670 2 - 169600520 tt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603589 2 - 171882078 tt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449958 2 +   2379783 tt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415853 2 +   4116138 tt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847796 2 +  58131712 TT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462899 2 -   3636681 tt
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154476233 2 - 158406734 TT
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333267 2 -   2086007 tt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398375 2 +   3831555 TT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116241302 2 + 116334831 TT
i micMur3.chr9              C 0 I 536
s otoGar3.GL873689             411330 2 +   3845361 tt
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59985587 2 -  91889043 TT
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13472515 60 +  16154928 I
e nomLeu3.chr6               70973755 144 + 121039945 I
e panTro5.chr15              73762999 118 -  83230942 I
e gorGor5.CYUI01000141v1       115246 153 -    281578 I
e colAng1.NW_012115278v1       444100 1296 -   4457520 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=165651.000000
s hg38.chr15_KI270851v1_alt    179064 50 +    263054 TACAGTCATT-----------------AAAAAAAAAAA-ATACAGTCACATGGTTCAAAAATCAAACC
s panPan2.chr15              25893311 51 +  99763055 TACAGTCATT-----------------AAAAAAAAAAGGATACAGTCACATGGTTCAAAAATCAAACC
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164282672 44 - 169600520 tacaattt-------------------aaaaaaaaaag-----agtcacatggttcaaaaatcaaaac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603591 40 - 171882078 tacaataa-------------------aaaaaaa---------agtcacatggttcaaaaatcaaaac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       449960 44 +   2379783 tacaataa-------------------aaaaaaaaaag-----agtcacatggttcaaaaatcaaaac
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415855 43 +   4116138 tacaataa-------------------aaaaaaa-aag-----agtcacatggttcaaaaatcaaaac
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847798 44 +  58131712 TACAATCA-------------------AAAAAAAAAAG-----AGTCACATGGTTCAAAAATCAAAAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462901 43 -   3636681 tacaat-a-------------------aaaaaaaaaag-----agtcacatggttcaaaaatcaaaac
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154476235 51 - 158406734 TATAGTCATT-----------------AAAAAAAAAGTAATACAGTCACATGGTTCAAAAATCAAAAC
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333269 50 -   2086007 tatagtcatt------------------aaaaaaaagtaatacagtcacatggttcaaaaatcaaaac
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398377 51 +   3831555 TATAGTCATT-----------------AAAAAAAAAGTAATAGAGTCACATGGTTCAAAAATCAAAAC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             411332 56 +   3845361 gatagtaatt---------tttttttCAAATAAGTAGT---ATAGTCCCATAGTTGAGAAGTCAGAAT
i otoGar3.GL873689          C 0 I 2
s canFam3.chr3               59985589 63 -  91889043 TATAGTCATAGTCATTTGTTTCTTTTCCAACTAAGTAT-----ATTCACATGGTTCAAAAATCAAAAT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116241304 536 + 116334831 I
e proCoq1.NW_012148396v1     13472515 60 +  16154928 I
e nomLeu3.chr6               70973755 144 + 121039945 I
e panTro5.chr15              73762999 118 -  83230942 I
e gorGor5.CYUI01000141v1       115246 153 -    281578 I
e colAng1.NW_012115278v1       444100 1296 -   4457520 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=160823.000000
s hg38.chr15_KI270851v1_alt    179114 25 +    263054 TAGGCAGAGACACACTGTCGCTTCC
s panPan2.chr15              25893362 25 +  99763055 TAGGCAGAGACACACTGTCGCTTCC
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164282716 25 - 169600520 taggcagagacacactgttgcttcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603631 25 - 171882078 taggcagagacacactgtcgcttcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450004 25 +   2379783 taggcagagacacactgtcgcttcc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415898 25 +   4116138 taggcagagacacactgtcgcttcc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847842 25 +  58131712 TAGGCAGAGACACACTGTCGCTTCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462944 25 -   3636681 taggcagagacacactgtcgcttcc
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154476286 25 - 158406734 TAGGCAGAGACACCCTGTTGCTTCC
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333319 25 -   2086007 taggcagagacacactgttgcttcc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398428 23 +   3831555 TAGGCAGAGACACA--GTTGCTTCC
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13472575 25 +  16154928 TAGGCAGAGACACACTGTCACTTCC
i proCoq1.NW_012148396v1    I 60 I 488
s otoGar3.GL873689             411390 17 +   3845361 CAGGTGGAGATACACTG--------
i otoGar3.GL873689          I 2 C 0
s canFam3.chr3               59985652 25 -  91889043 TAAGTGCAAAGACGCTGTTACTTCC
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116241304 536 + 116334831 I
e nomLeu3.chr6               70973755 144 + 121039945 I
e panTro5.chr15              73762999 118 -  83230942 I
e gorGor5.CYUI01000141v1       115246 153 -    281578 I
e colAng1.NW_012115278v1       444100 1296 -   4457520 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=574989.000000
s hg38.chr15_KI270851v1_alt    179139 128 +    263054 -CCTGCCCACCCCTTCCAC--CCATTTTCCCACCTGCT-CCCTCTGACTTTCC-AGTCTCCTCTGTAACCTCC--T--TGTTCTCTGGCATGAGTAC-----------------------------------------GTTCGTGGTAGCATGCTTCATTACTTGTGTTGCTTGTTTT
s panPan2.chr15              25893387 128 +  99763055 -CCTGCCCACCCCTTCCAC--CCATTTTCCCACCTGCT-CCCTCTGACTTTCC-AGTCTCCTCTATAACCTCC--T--TGTTCTCTGGAATGAGTAC-----------------------------------------GTTCGTGGTAGCATGCTGCATTACTTGTGTTGCTTGTTTT
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164282741 125 - 169600520 -cttgcccaccccttctac--ccagtttcccacctgcc-ccctCTCACTTTTC-AGTCTCCTCTGTAACCTCC--T--TGTTCTCTGGAATGACTAT-----------------------------------------GCTAGTGGTAGCATGTTGCATTACTTGTGTTGCTTAT---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603656 125 - 171882078 -cttgcccaccccttctac--ccagtttcccacctgcc-ccctCTCACTTTTC-AGTCTCCTCTGTAACCTCC--T--TGTTCTCTGGAATGACTAT-----------------------------------------GCTAGTGGTAGCATGTTGCATTACTTGTGTTGCTTAT---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450029 125 +   2379783 -cttgcccaccccttctac--ccagtttcccacctgcc-ccctCTCACTTTTC-AGTCTCCTCTGTAACCTCC--T--TGTTCTCTGGAATGACTAT-----------------------------------------GCTAGTGGTAGCATGTTGCATTACTTGTGTTGCTTAT---
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       415923 125 +   4116138 -cttgcccaccccttctac--ccagtttcccacctgcc-ccctCTCACTTTTC-AGTCTCCTCTGTAACCTCC--T--TGTTCTCTGGAATGACTAT-----------------------------------------GCTAGTGGTAGCATGTTGCATTACTTGTGTTGCTTAT---
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847867 120 +  58131712 -CTTGCCCACCCCTTCTAC--CCAGTTTCCCACCTGCC-CCCTCTCACTTTTC-AGTCTCCTCTGTAACCTCC--T--TGTTCTCTGGAATGAGTAC------------------------------------------CTAGTGGTAGCAGGTTGCGTTACTTGTGGTG----T---
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       462969 125 -   3636681 -cttgcccaccccttctac--ccagtttcccacctgcc-ccctCTCACTTTTC-AGTCTCCTCTGTAACCTCC--T--GGTTCTCTGGAATGACTAT-----------------------------------------GCTAGTGGTAGCATGTTGCATTACTTGTGTTGCTTAT---
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154476311 124 - 158406734 -CCTGCCCACCGCATCTAC--CCCGTTTCCCACCTGCT-CCTCCTCA-GTTTT-AGTCTCATCTGTAGCCTCC--T--TATTCTCCGGAATGAGTAT-----------------------------------------GCTAGTggtagcatgttgcattacttgtgttgcttgt---
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333344 125 -   2086007 -cctgcccaccatgtccac--ccagtttcccacctgct-cctCCTCACTTTTT-AGTCTCATCTGCAGCCTCC--T--TATTCTCTGGAGTGAGTAT-----------------------------------------GCTagtggtagcatgttgcattacttgtgttgcttgt---
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398451 125 +   3831555 -CCTGCCCACCACATCTAC--CTGGTTTCCCACCTGTT-CCTTCTCACTTCTT-AGTCTCATCTGTAGCCTCC--T--TATTCTCTGGAATGAGTAT-----------------------------------------GCTGGTggtagcatgttgcattacttgtgttgcttgt---
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             411407 163 +   3845361 ------CCACCTCCTGCCC--CAGTTTCCCTGCCTGCT-TGTCCTTACTTTCT-AGTCTTTTCTGTGACCCTCTGT--CGTTGCCTGGACTGATTATACAGGTACACATAACATGGGTAAACTTGATGTCCATTCTGTGTTAGCAGTGGCACGTTGCATTTCTTCTGTAGCTTGT---
i otoGar3.GL873689          C 0 I 407
s canFam3.chr3               59985677 118 -  91889043 TCCTTCCTGTCCTCTTATCTACTGGTTTTACACCTGCTGCTTTTTTACTTTTCTAGTCTCTCACATATCCTTT--TAGCATTCTCTGGAATAA--AT-----------------------------------------GTTATTGGTAGCATGT--CATAGcttg-------------
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116241304 536 + 116334831 I
e proCoq1.NW_012148396v1     13472600 488 +  16154928 I
e nomLeu3.chr6               70973755 144 + 121039945 I
e panTro5.chr15              73762999 118 -  83230942 I
e gorGor5.CYUI01000141v1       115246 153 -    281578 I
e colAng1.NW_012115278v1       444100 1296 -   4457520 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=353961.000000
s hg38.chr15_KI270851v1_alt    179267 92 +    263054 TTGTTTTTtttttttaacta-accatatata-ctggag----taccttatcag--agtgtccctctttgtttttataaatcagcttagtcttcagtgtgt
s panPan2.chr15              25893515 92 +  99763055 TTTTTGTTTttttttcacta-accatatata-ctggag----tactttatcag--agtgtctctctttgtttttataaatcagcttagtcttcagtgtgt
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164282866 84 - 169600520 --------Ttttttttacta-accatatata-ctggag----tactttatcag--agtgtcactatttgtttttataaagtagcttactcttcagtgtgc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603781 84 - 171882078 --------Ttttttttacta-accatatata-ctggag----tactttatcag--agtgtcactatttgtttttataaagtagcttactcttcagtgtgc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450154 84 +   2379783 --------Ttttttttacta-accatatata-ctggag----tactttatcag--agtgtcactatttgtttttataaagtagcttactcttcagtgtgc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       416048 84 +   4116138 --------Ttttttttacta-accatatata-ctggag----tactttatcag--agtgtcactatttgtttttataaagtagcttactcttcagtgtgc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53847987 85 +  58131712 -------GTGttttttacta-accatatgta-ctggag----tactttatcag--agtgtcactatttgtttttataaagtagcttactcttcagtgtgc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       463094 85 -   3636681 -------TTtttttttacta-accatatata-ctggag----tactttatcag--agtgtcactatttgtttttataaagtagcttactcttcagtgtgc
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154476435 82 - 158406734 ---------ttttttcacta-accatgtata-ctggaa----tactttatgag--agcatcgctc-ttgtttttataaagcagcttagtattcagcgtgt
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333469 84 -   2086007 ---------ttttttcacta-accatatttacctggag----tactttatgag--agcattgctctttgtttttataaagcaccttagtattcagtgtgt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398576 83 +   3831555 ---------ttttttcactg-accgtatata-ctgaag----tactttatgag--agcatcgctctttgtttttataaagcagcttagtattcagtgtgc
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59985795 90 -  91889043 --------ttcttttcactacacagtatata-ctgaggagcttgctctattagtaaacagaactttttttattt-taaagcaactcagtattccatgttt
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116241304 536 + 116334831 I
e proCoq1.NW_012148396v1     13472600 488 +  16154928 I
e otoGar3.GL873689             411570 407 +   3845361 I
e nomLeu3.chr6               70973755 144 + 121039945 I
e panTro5.chr15              73762999 118 -  83230942 I
e gorGor5.CYUI01000141v1       115246 153 -    281578 I
e colAng1.NW_012115278v1       444100 1296 -   4457520 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=98288.000000
s hg38.chr15_KI270851v1_alt    179359 18 +    263054 ggatgtgtc-----ttttatctg
s panPan2.chr15              25893607 18 +  99763055 ggatgtgtc-----ttttatgta
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164282950 18 - 169600520 ggatgtgtc-----ttttatgtg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603865 18 - 171882078 ggatgtgtc-----ttttatgtg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450238 18 +   2379783 ggatgtgtc-----ttttatgtg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       416132 18 +   4116138 ggatgtgtc-----ttttatgtg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53848072 18 +  58131712 ggatgtgtc-----ttttatgtg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       463179 18 -   3636681 ggatgtgtc-----ttttatgtg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       445396 18 -   4457520 GGATATGTC-----TTTTATGTG
i colAng1.NW_012115278v1    I 1296 C 0
s calJac3.chr6              154476517 18 - 158406734 ggatgtgtc-----tttttcttt
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333553 18 -   2086007 ggatatgtc-----ttttatgtg
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398659 18 +   3831555 ggatgtgtc-----ttttatgtt
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               59985885 23 -  91889043 gcatctatcatgatttttgtttg
i canFam3.chr3              C 0 I 1353
e micMur3.chr9              116241304 536 + 116334831 I
e proCoq1.NW_012148396v1     13472600 488 +  16154928 I
e otoGar3.GL873689             411570 407 +   3845361 I
e nomLeu3.chr6               70973755 144 + 121039945 I
e panTro5.chr15              73762999 118 -  83230942 I
e gorGor5.CYUI01000141v1       115246 153 -    281578 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=22484.000000
s hg38.chr15_KI270851v1_alt    179377 12 +    263054 tctttctttagt
s panPan2.chr15              25893625 12 +  99763055 tctttctttagt
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164282968 12 - 169600520 tttttctttagt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603883 12 - 171882078 tttttctttagt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450256 12 +   2379783 tttttctttagt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       416150 12 +   4116138 tttttctttagt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53848090 12 +  58131712 tttttctttagt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       463197 12 -   3636681 tttttctttagt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       445414 12 -   4457520 TCTTTCTTTAGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154476535 11 - 158406734 ttcttttttgt-
i calJac3.chr6              C 0 I 356
s cebCap1.NW_016107707v1       333571  2 -   2086007 gt----------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398677  2 +   3831555 gt----------
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116241304 536 + 116334831 I
e proCoq1.NW_012148396v1     13472600 488 +  16154928 I
e canFam3.chr3               59985908 1353 -  91889043 I
e otoGar3.GL873689             411570 407 +   3845361 I
e nomLeu3.chr6               70973755 144 + 121039945 I
e panTro5.chr15              73762999 118 -  83230942 I
e gorGor5.CYUI01000141v1       115246 153 -    281578 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=266475.000000
s hg38.chr15_KI270851v1_alt    179389 58 +    263054 gagtctcttattggtggacacttgggcttattgccacaatgttgctatacaaatagtg
s panPan2.chr15              25893637 58 +  99763055 gagtctcttattggtggacacttgggcttattgccacaatgttgctatacaaatagtg
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164282980 58 - 169600520 gagtctcttattggtggacacttgggcttactgccacagtgttgctatacaagtagta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603895 58 - 171882078 gagtctcttattggtggacacttgggcttactgccacagtgttgctatacaagtagtg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450268 58 +   2379783 gagtctcttattggtggacacttgggcttactgccacagtgttgctatacaagtagtg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       416162 58 +   4116138 gagtctcttattggtggacacttggtcttactgccacagtgttgctatacaagtagtg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53848102 58 +  58131712 gagtctcttattggtggacacttgggcttactgccacagtgttgctatacaagtagtg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       463209 58 -   3636681 gagtctcttattggtggacacctgggcttactgccacagtgttgctatacaagtagtg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       445426 58 -   4457520 GAGTCTCTTATTGGTGGACACTGGGGCTTACTGCCACAGTGTTGCTGTACGAGTAGTG
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       333573 57 -   2086007 gagtctcttattggtggacgcttgg-cttattgccacagtatttctatacaaataggg
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398679 57 +   3831555 gagtctcttattggtgggcacttgg-cttattgccacagtattgctatacaaatagtg
i aotNan1.NW_018503298v1    C 0 C 0
e micMur3.chr9              116241304 536 + 116334831 I
e proCoq1.NW_012148396v1     13472600 488 +  16154928 I
e canFam3.chr3               59985908 1353 -  91889043 I
e otoGar3.GL873689             411570 407 +   3845361 I
e nomLeu3.chr6               70973755 144 + 121039945 I
e panTro5.chr15              73762999 118 -  83230942 I
e gorGor5.CYUI01000141v1       115246 153 -    281578 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154476546 356 - 158406734 I

a score=13095.000000
s hg38.chr15_KI270851v1_alt    179447 3 +    263054 ctg
s panPan2.chr15              25893695 3 +  99763055 ctg
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164283038 3 - 169600520 ctg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603953 3 - 171882078 ctg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450326 3 +   2379783 ctg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       416220 3 +   4116138 ctg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53848160 3 +  58131712 ctg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       463267 3 -   3636681 ctg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       445484 3 -   4457520 CTG
i colAng1.NW_012115278v1    C 0 C 0
s aotNan1.NW_018503298v1       398736 3 +   3831555 ctg
i aotNan1.NW_018503298v1    C 0 I 42
e micMur3.chr9              116241304 536 + 116334831 I
e proCoq1.NW_012148396v1     13472600 488 +  16154928 I
e canFam3.chr3               59985908 1353 -  91889043 I
e otoGar3.GL873689             411570 407 +   3845361 I
e cebCap1.NW_016107707v1       333630 0 -   2086007 C
e nomLeu3.chr6               70973755 144 + 121039945 I
e panTro5.chr15              73762999 118 -  83230942 I
e gorGor5.CYUI01000141v1       115246 153 -    281578 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154476546 356 - 158406734 I

a score=285958.000000
s hg38.chr15_KI270851v1_alt    179450 87 +    263054 AGggtcgggtgtagtggctcacgcctgtaatcccagcactttgggaggtcgaggtgggtggatcacctgaggttgggagtttgagat
s panPan2.chr15              25893698 87 +  99763055 AGggtccggtgtggtggctcacgcctgtaatcccagcactttgggaggtcgaggtgggtggatcacctgaggttgggagtttgagat
i panPan2.chr15             C 0 n 0
s rheMac8.chr7              164283041 87 - 169600520 AGggtcgggtgtggtggctcacgcctgtaatcccagcactttggaaggcctaggtgggcggatcacccgaggttgggagtttgagac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165603956 87 - 171882078 agggtcgggtgtggtggctcacgcctgtaatcccagcactttggaaggcctaggtgggcggatcacccgaggttgggagtttgagac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450329 87 +   2379783 AGggtcgggtgtggtggctcacgcctgtaatcccagcactttggaaggcctaggtgggcggatcacccgaggttgggagtttgagac
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       416223 87 +   4116138 AGggtcgggtgtggtggctcacgcctgtaatcccagcactttggaaggcctaggtgggcggatcacccgaggttgggagtttgagac
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53848163 87 +  58131712 agggtcgggtgtggtggctcacgcctgtaatcccagcactttggaaggcctaggtgggcggatcacccgaggttgggagtttgagac
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       463270 87 -   3636681 AGggtcgggtgtggtggctcacgcctgtaatcccagcactttggaaggcctaggtgggcggatcacccgaggttgggagtttgggac
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       445487 87 -   4457520 AGggtcgggtgtggtggctcacgcctgtaatcccagcactttgggaggcctaggtgggcggatcacccgaggttgggagtttgagac
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116241304 536 + 116334831 I
e proCoq1.NW_012148396v1     13472600 488 +  16154928 I
e canFam3.chr3               59985908 1353 -  91889043 I
e aotNan1.NW_018503298v1       398739 42 +   3831555 I
e otoGar3.GL873689             411570 407 +   3845361 I
e cebCap1.NW_016107707v1       333630  0 -   2086007 C
e nomLeu3.chr6               70973755 144 + 121039945 I
e panTro5.chr15              73762999 118 -  83230942 I
e gorGor5.CYUI01000141v1       115246 153 -    281578 I
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154476546 356 - 158406734 I

a score=1221647.000000
s hg38.chr15_KI270851v1_alt    179537 219 +    263054 cagcctggccaacttggagaaaccccgtctctactaaaaaatacaaaaattagcagggcgtggtgacgggtgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccgagatcgcgccactgcactccagggtgggcaacaagagtgaaactccatctcaa---acaacaacaacagaaa---aC
s panTro5.chr15              73763117 225 -  83230942 cagcctggccaacttggagaaaccctgtctcaacttaaaaatacaaaaattagctgggtgtggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagccaagatcgcgccattgcactgcagcctgggcaacaagcgtgaaaccccatctcaacaaacaacaacaacaaaaacaaaC
i panTro5.chr15             I 118 C 0
s panPan2.chr15              74066589 225 -  99763055 cagcctggccaacttggagaaaccctgtctcaacttaaaaatacaaaaattagctgggtgtggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagccaagatcgcgccattgcactgcagcctgggcaacaagcgtgaaaccccatctcaacaaacaacaacaacaaaaacaaaC
i panPan2.chr15             I 125 C 0
s gorGor5.CYUI01000141v1       115399 225 -    281578 cagcctggccaacttggagaaaccctgtctcaacttaaaaatacaaaaattagctgggcgtggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagccaagatcgcgccattgcactgcagcctgggcaacaagcgtgaaaccccatctcaacaaacaacaacaacaaaaacaaaC
i gorGor5.CYUI01000141v1    I 153 C 0
s nomLeu3.chr6               70973899 225 + 121039945 cagcctggccaccttggagaaaccccgtctcaactaaaaaatacaaaaattagctgggcatggtggcacatgcctgtaatcccagctactcaggagtctgaggcaggagaatcacttgaacctgggaggtggaggttgcaatgagccaagatcgcaccattgcactccagcctgggcaacaagcatgaaactccatctcaaaaaacaacaacaacaaaaaCACAC
i nomLeu3.chr6              I 144 C 0
s rheMac8.chr7              164283128 222 - 169600520 cagcctggccaacttggagaaaccccgtctcaactaaaaaatacaaaaattatccgggcttggtggcacatgcctgtaatcccagctgctcgggaggctgaggtaggagaatcactggaacctgggaggcagacgttgctgtgagccaagatcgcaccattgcactccagcctgggcaacaagagtgaaactccatctcga---acaacaacaataacaacaaaC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165604043 222 - 171882078 cagcctggccaacttggagaaaccccgtctcaactaaaaaatacaaaaattagccgggcttggtggcacatgcctgtaatcccagctgctcgggaggctgaggtaggagaatcactggaacctgggaggcagacgttgctgtgagccaagatcgcaccattgcactccagcctgggcaacaagagtgaaactccatctcga---acaacaacaataacaacaaac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450416 222 +   2379783 cagcctggccaacttggagaaaccctgtctcaactaaaaaatacaaaaattagccgggcttggtggcacatgcctgtaatcccagctgctcgggaggctgaggtaggagaatcactggaacctgggaggcagacgttgctgtgagccaagatcgcaccattgcactccagcctgggcaacaagagtgaaactccatctcaa---acaacaacaataacaacaaaC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       416310 222 +   4116138 cagcctggccaacttggagaaaccccatctcaactaaaaaatacaaaaattagccgggcttggtggcacatgcctgtaatcccagctgctcgggaggctgaggtaggagaatcactggaacctgggaggcagaggttgctgtgagccaagatcgcaccattgcactccagcctgggcaacaagagtgaaactccatctcaa---acaacaacaataacaacaaaC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53848250 222 +  58131712 cagcctggccaacttggagaaaccccgtctgaactgaaaaatacaaaaattagccgggcttggtggcacatgcctgtaatcccagctgctcgggaggctgaggtaggagaatcactggaacctgggtggcagaagttgctgtgagccaagatcgcaccattgcactccagcctgggcaacaagagtgaaactccatctcaa---acaacaacaataacaacaaac
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       463357 221 -   3636681 cagcctggccaacttggagaaaccccgtctcaactaaaaaatacaaaaattagccgggcttggtggcacatgcctgtaatcccagctgctcgggaggctgaggtaggagaatcactggaacctgggaggcagaggttgctgtgagccaagatcgcaccattgcactccagcctgggcaacaagagtgaaactccatctcaa---acaacaacaataa-aGCAAAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       445574 222 -   4457520 cagcctggccaacttggagaaaccccgtctcaactaaaaaatacaaaaattagccgggcttggtggcatatgcctgtaatcccagctgctcgggaggctgaggtaggagaatcgctggaacctgggaggcagaggttgcggtcagccaagatcgcactattgcgctccagcctgggcaacaagagtgaaactccatctcaa---acaacaacaataacaacaaaC
i colAng1.NW_012115278v1    C 0 C 0
e micMur3.chr9              116241304 536 + 116334831 I
e proCoq1.NW_012148396v1     13472600 488 +  16154928 I
e canFam3.chr3               59985908 1353 -  91889043 I
e aotNan1.NW_018503298v1       398739  42 +   3831555 I
e otoGar3.GL873689             411570 407 +   3845361 I
e cebCap1.NW_016107707v1       333630   0 -   2086007 C
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154476546 356 - 158406734 I

a score=71514.000000
s hg38.chr15_KI270851v1_alt    179756 10 +    263054 ACAAATAGTA
s panTro5.chr15              73763342 10 -  83230942 ACAAATAGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74066814 10 -  99763055 ACAAATAGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       115624 10 -    281578 ACAAATAGTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70974124 10 + 121039945 ACAAATAGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164283350 10 - 169600520 ACAAATAGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165604265 10 - 171882078 acaaatagtg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450638 10 +   2379783 ACAAATAGTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       416532 10 +   4116138 ACAAATAGTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53848472 10 +  58131712 acaaatagtg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       463578 10 -   3636681 ACAAATAGTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       445796 10 -   4457520 ACAAATAGTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154476902 10 - 158406734 acaaatagtg
i calJac3.chr6              I 356 C 0
e micMur3.chr9              116241304 536 + 116334831 I
e proCoq1.NW_012148396v1     13472600 488 +  16154928 I
e canFam3.chr3               59985908 1353 -  91889043 I
e aotNan1.NW_018503298v1       398739 42 +   3831555 I
e otoGar3.GL873689             411570 407 +   3845361 I
e cebCap1.NW_016107707v1       333630  0 -   2086007 C
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=324663.000000
s hg38.chr15_KI270851v1_alt    179766 47 +    263054 CTGCAAGGCCTGGCCTGGAACACGTGTCCTCC-ATGTGTGCACGCGTG
s panTro5.chr15              73763352 48 -  83230942 CTGCAAGGCCTGACCTGGAACACGTGTCCTCCCATGTGTGCACATGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74066824 47 -  99763055 CTGCAAGGCCTGACCTGGAACACGTGTCCTCC-ATGTGTGCACGTGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       115634 47 -    281578 CTGCAAGGCCTGACCTGGAACACGTGTCCTCC-ATGTGTGCACGTGTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70974134 45 + 121039945 CTGCAAGGCCTGACCTCGAACACGTGTCCTCC-ATGTGTGCAC--GTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164283360 47 - 169600520 CTGCAGGGCCTGCCCTGGAACACGTGTGCTCC-ATGTGTGCATGCGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165604275 47 - 171882078 ctgcaggGCCTGCCCTGGAACACGTGTGCTCC-ATGTGTGCACGCGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450648 47 +   2379783 CTGCAGGGCCTGCCCTGGAACACGTGTGCTCC-ATGTGTGCACGCGTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       416542 47 +   4116138 CTGCAGGGCCTGCCCTGGAACACGTGTGCTCC-ATGTGTGCACGCGTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53848482 47 +  58131712 ctgcaggGCCTGCCCTGGAACACGTGTGCTGC-ATGTGTGCACGCGTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       463588 47 -   3636681 CTGCAGGGCCTGCCCTGGAACACGTGTGCTCC-ATGTGTGCACGCGTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       445806 47 -   4457520 CTGCAGGCCCTGCCCTGGAACACGCGTGCTCC-ACGTGTGCATGCATG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154476912 47 - 158406734 ctgcagggcctgaccttgtacatgtgtcttcc-tcgtgtgcacacgtg
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333630 47 -   2086007 ctgcagggcctgacctcgtacatgtgtcttcc-ttgtgtgcacacgtg
i cebCap1.NW_016107707v1    C 0 C 0
e micMur3.chr9              116241304 536 + 116334831 I
e proCoq1.NW_012148396v1     13472600 488 +  16154928 I
e canFam3.chr3               59985908 1353 -  91889043 I
e aotNan1.NW_018503298v1       398739 42 +   3831555 I
e otoGar3.GL873689             411570 407 +   3845361 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=104134.000000
s hg38.chr15_KI270851v1_alt    179813 14 +    263054 TGTGCCTGTGCACA
s panTro5.chr15              73763400 14 -  83230942 TGTGCCCGTGCACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74066871 14 -  99763055 TGTGCCCGTGCAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       115681 14 -    281578 TGTGCCCGTGCACA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70974179 14 + 121039945 TGTGCCTGTGCACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164283407 14 - 169600520 TGTGCCTGTGCACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165604322 14 - 171882078 TGTGCCTGTGCACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450695 14 +   2379783 TGTGCCTGTGCACA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       416589 14 +   4116138 TGTGCCTGTGCACA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53848529 14 +  58131712 TGTGCCTTTGCCCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       463635 14 -   3636681 TGTGCCTGTGCACA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       445853 13 -   4457520 TGTGCCCGTTC-CA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154476959 14 - 158406734 tgTGTCTGTGCACG
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333677 14 -   2086007 tgtgtCTGTGCACG
i cebCap1.NW_016107707v1    C 0 C 0
s otoGar3.GL873689             411977 14 +   3845361 TGTGCCTGTGTGTG
i otoGar3.GL873689          I 407 C 0
e micMur3.chr9              116241304 536 + 116334831 I
e proCoq1.NW_012148396v1     13472600 488 +  16154928 I
e canFam3.chr3               59985908 1353 -  91889043 I
e aotNan1.NW_018503298v1       398739 42 +   3831555 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=1244279.000000
s hg38.chr15_KI270851v1_alt    179827 153 +    263054 TGCACAGGTGGGGATGGACCTCGTGTGGGCTGGTTGTCACCAGATTGCTCCTGTACATCTTGA-TTTCTCTCACCACCAATAGGGATGCTGGTCTCCCAGCCTTGTGTGTGGGCTTTTGGGATTTTGCCTGCTAAAGCACAAAGTGGTGACCCC
s panTro5.chr15              73763414 153 -  83230942 TGCACAGGTGGGGAGGCACCTAGTGTGGGCTGGTTGTCACCAGATTGCTCCCGTACAAGTTGA-TTTCTCTCACCACCAACATGGATGCTGGTCTCCCAGCCTTGTGTGTGGGCTTTTGGGATTTTGCCTGCTAAAGCACAAAATGGTGACCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74066885 153 -  99763055 TGCACAGGTGGGGAGGCACCTAGTGTGGGCTGGTTGTCACCAGATTGCTCCCGTACAAGTTGA-TTTCTCTCACCACCAACATGGATGCTGGTCTCCCAGCCTTGTGTGTGGGCTTTTGGGATTTTGCCTGCTAAAGCACAAAATGGTGACCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       115695 153 -    281578 TGCACAGGTGGGGATGCACCTAGTGTGGGCTGGTTGTCACCAGATTGCTCCCGTACAAGTTGA-TTTCTCTCACCACCAACATGGATGCTAGTCTCCCAGCCTTGTGTGTGGGCTTTTGGGATTTTGCCTGCTAAAGCACAAAATGGTGACCCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70974193 153 + 121039945 TGCACAGGTGGGGATGCACCTAGTGTGGGCTGGTTGTCACCAGATTGCTCCCGTACAACTTGA-TTTCTCTCACCACCAACACGGATGCTGGTCTCCCAGCCTTGTGTGTGGGCTTTTGGGATCTTGCCTGCTAAAGCACAAAATGGTGACCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164283421 154 - 169600520 TGCGCAGGTGGGGATGCACCTAGTGTGGGCTGGTTGTCACCAGGTTGCTCCTGCACAACTTGATTTTTTCTCACCACCAATAGGGATGCTGGTCTCCCTGCCTCGTGTGTGGGCTTTTGGGATTTTGCCTCCTAAAGCACAAGATGGTGACCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165604336 154 - 171882078 TGCGCAGGTGGGGATGCACCTAGTGTGGGCTGGTTGTCACCAGGTTGCTCCTGCACAACTTGATTTTTTCTCACCACCAATAGGGATGCTGGTCTCCCTGCCTCGTGTGTGGGCTTTTGGGATTTTGCCTCCTAAAGCACAAGATGGTGACCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450709 154 +   2379783 TGCGCAGGTGGGGATGCACCTAGTGTGGGCTGGTTGTCACCAGGTTGCTCCTGCACAACTTGATTTTTTCTCACCACCAATAGGGATGCTGGTCTCCCTGCCTCGTGTGTGGGCTTTTGGGATTTTGCCTCCTAAAGCACAAGATGGTGACCCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       416603 154 +   4116138 TGCGCAGGTGGGGATGCACCTAGTGTGGGCTGGTTGTCACCAGGTTGCTCCTGCACAACTTGATTTTTTCTCACCACCAATAGGGATGCTGGTCTCCCTGCCTTGTGTGTGGGCTTTTGGGATTTTGCCTCCTAAAGCACAAGATGGTGATCCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53848543 152 +  58131712 TGCGCAGGTGGGGATGCACCCAGTGTGGGCTGGTTGTCACCA-GTTGCTCCTGCACGACTTGA-TTTCTCTCACCGCCGACACGGATGCTGGTCTCCCAGCCTCGCGTGTGGGCTTTTGGGATTTTGCCTCCTAAAGCACAAGATGGTGACCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       463649 153 -   3636681 TGCGCAGGTGGGGATGCACCTAGTGTGGGCTGGTTGTCACCAGGTTGCTCCTGCACGACTTGA-TTTCTGTCACCGCCGACACGGATGCTGGTCTCCCTGCCTCGTGTGTGGGCTTTTGGGATTTTGCCTCCTAAAGCACAAGATGGTGACCCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       445866 148 -   4457520 TGCATAGGTGGGGATGCACCTAGTGTGGGCT-GTTGTCACCAGGTTGCTCCT----CACTTGA-TTTCTCTCACCGCCAACACGGATGCTGGTCTCCCAGCCTCGCGTGTGGGCTTTTGGGATTTTGCCTCCTAAAGCGCAAGATGGTGACCCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154476973 143 - 158406734 TGCACAGGTGGGGATGTGTCTAGTGCGGGCTGCTTGTCACCAGATTGCTCCTGTACAACTTGA-TTTCTCTTACCACCAATAGGGATGCTGGCCTCCCAGCCTTGTGCATGGGCTTTCGGGATTTTGCCTGCTAAGGCACGAAA----------
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333691 143 -   2086007 TGCACAGGTGGGAATGTGTCCAGTGCGGGCTGCTTGTCACCAGATTGCTCCTGTGCGACTTGA-TTTCTCTCACCACCAGGAGGGATGCTGGCCTCCCAGCCTTGTGCATGGGCTTTTGGGATTTTGCCTGCTAAGGCACAAAA----------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398781 143 +   3831555 tGCACAGGTGGGGATGTGTCTAGTGCGGGCTGCATGTCACCAGATTGCTCCTGTACAACTTGA-TTTCTGTCACCACCGATAGGGATGCTGGCCTCCCAGCCTTGTGCGTGGGCTTTTGGGATTTTGCCTGCTAAGGCACAAAA----------
i aotNan1.NW_018503298v1    I 42 C 0
s otoGar3.GL873689             411991 117 +   3845361 CACACTGCTGCCAGTGGCCCCAGCGTGGGCT-----------GATTGCTCC-------------TTATCACCCCCACCCACAGAGCT-CTTATTTCCCAGTCT--------GGTAGTTGGGTTTTTGCCTGTTACGGCACAAAA----GTACCT
i otoGar3.GL873689          C 0 C 0
e micMur3.chr9              116241304 536 + 116334831 I
e proCoq1.NW_012148396v1     13472600 488 +  16154928 I
e canFam3.chr3               59985908 1353 -  91889043 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=11537.000000
s hg38.chr15_KI270851v1_alt    179980 2 +    263054 GA
s panTro5.chr15              73763567 2 -  83230942 GA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74067038 2 -  99763055 GA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       115848 2 -    281578 GA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70974346 2 + 121039945 CG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164283575 2 - 169600520 GA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165604490 2 - 171882078 GA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450863 2 +   2379783 GA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       416757 2 +   4116138 GA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53848695 2 +  58131712 GA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       463802 2 -   3636681 GA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       446014 2 -   4457520 GA
i colAng1.NW_012115278v1    C 0 C 0
s micMur3.chr9              116241840 2 + 116334831 GA
i micMur3.chr9              I 536 C 0
s otoGar3.GL873689             412108 2 +   3845361 GG
i otoGar3.GL873689          C 0 C 0
e proCoq1.NW_012148396v1     13472600 488 +  16154928 I
e canFam3.chr3               59985908 1353 -  91889043 I
e aotNan1.NW_018503298v1       398924 0 +   3831555 C
e cebCap1.NW_016107707v1       333834 0 -   2086007 C
e saiBol1.JH378292             292021 16612 -   2682657 I
e calJac3.chr6              154477116 0 - 158406734 C

a score=480014.000000
s hg38.chr15_KI270851v1_alt    179982 42 +    263054 TATAGTTTGAGCATTTTAAAATATATTAGTATTTAAGGGCCA
s panTro5.chr15              73763569 42 -  83230942 TATAGTTTGAGCATTTAAAAATATATTAGTATTTAAGGGCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74067040 42 -  99763055 TATAGTTTGAGCATTTAAAAATATATTAGTATTTAAGGGCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       115850 42 -    281578 TATAGTTTGAGCATTTAAAAATATATTAGTATTTAAGGGCCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70974348 42 + 121039945 TATAGTTTGAGCATTTAAAAATATATTGGTATTTAAGGGCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164283577 42 - 169600520 TGTAGTTTGAGCATTTTAAAATATATTAGTATTTAAGGGCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165604492 42 - 171882078 TGTAGTTTGAGCATTTTAAAATATATTAGTATTTAAGGGCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450865 42 +   2379783 TGTAGTTTGAGCATTTTAAAATATATTAGTATTTAAGGGCCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       416759 42 +   4116138 TGTAGTTTGAACATTTTAAAATATATTAGTATTTAAGGGCCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53848697 42 +  58131712 TGTAGTTTGAGCATTTTAAAATATATTAGTATTTAAGGGCCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       463804 42 -   3636681 TGTAGTTTGAGCATTTTAAAATATATTAGTATTTAAGGGCCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       446016 42 -   4457520 TGTAGTTTGAGCATTTTAAAGTATATTAGTATTTAAGGGCCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154477116 40 - 158406734 --TAACTTGAGCATTTAAAAGTATATTAGTATTTAAGGGCCA
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333834 40 -   2086007 --TAATTTGAGCATTTAAAAATATATTAGTATTTAAGGGCCA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398924 40 +   3831555 --TAATTTGAGCATTTTAAAATATGTTAGTATTTAAGGGCCG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116241842 36 + 116334831 TACAGTTTGAGCATTTTAAAATA------TATTTAAGGGCCA
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13473088 36 +  16154928 TATAGTCTGAGCATTTTAAAATA------TATTTAAGGGCCA
i proCoq1.NW_012148396v1    I 488 C 0
s otoGar3.GL873689             412110 36 +   3845361 TGTAGTTTGAGCGTTTTAAAATA------CATTTAAAGGTCA
i otoGar3.GL873689          C 0 C 0
e canFam3.chr3               59985908 1353 -  91889043 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=279366.000000
s hg38.chr15_KI270851v1_alt    180024 23 +    263054 TTTATACTACTTTTTAATGGGCT
s panTro5.chr15              73763611 23 -  83230942 TTTATAGTACTTTTTAATGGGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74067082 23 -  99763055 TTTATAGTACTTTTTAATGGGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       115892 23 -    281578 TTTATAGTACTTTTTAATGGGCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70974390 23 + 121039945 TTTATAGTACTTTTTAATGGACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164283619 23 - 169600520 TTTATAGTACTTTTTAATGGGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165604534 23 - 171882078 TTTATAGTACTTTTTAATGGGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450907 23 +   2379783 TTTATAGTACTTTTTAATGGGCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       416801 23 +   4116138 TTTATAGTACTTTTTAATGGGCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53848739 23 +  58131712 TTTGTAGTACTTTTTAATGGGCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       463846 23 -   3636681 TTTATAGTACTTTTTAATGGGCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       446058 23 -   4457520 TTGATAGTACTTTTTAATAGGCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154477156 23 - 158406734 CTTATACTACCTTCTAATGGGCT
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333874 23 -   2086007 CTTATACTACTTTCTAATGGGCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398964 23 +   3831555 CTTATACTACTTTCTAATGGACT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116241878 23 + 116334831 TTTGTACTACTTTTTATTGGGCT
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13473124 23 +  16154928 TTTGTACTACTTTTTAGTGGGCT
i proCoq1.NW_012148396v1    C 0 I 29376
s otoGar3.GL873689             412146 23 +   3845361 TTTGTACTATTTTTTACTGGGCT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59987261 23 -  91889043 TTTATATTTCTCTTTAGTGGTTT
i canFam3.chr3              I 1353 C 0
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=149900.000000
s hg38.chr15_KI270851v1_alt    180047 11 +    263054 CTGT-----TGAAATG
s panTro5.chr15              73763634 16 -  83230942 CTGTTAAAATGAAATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74067105 16 -  99763055 CTGTTAAAATGAAATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       115915 16 -    281578 CTGTTAAAATGAAATC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70974413 16 + 121039945 CTGTTAAAATGAAATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164283642 16 - 169600520 CTGTTAAAATGAAATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165604557 16 - 171882078 CTGTTAAAATGAAATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450930 16 +   2379783 CTGTTAAAATGAAATG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       416824 16 +   4116138 CTGTTAAAATGAAATG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53848762 16 +  58131712 CTGTTAAAATGAAATG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       463869 16 -   3636681 CTGTTAAAATGAAATG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       446081 16 -   4457520 CTGTTAAAATGAAATG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154477179 16 - 158406734 CTGTTAAAATGAAATG
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333897 16 -   2086007 CTGTTAAAATGAAATG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       398987 16 +   3831555 CTGTTAAAATGAAATG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116241901 11 + 116334831 GTGTTAAAATG-----
i micMur3.chr9              C 0 I 29276
s otoGar3.GL873689             412169 11 +   3845361 GTGTTAAAATG-----
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59987284 11 -  91889043 CTATTAAAATG-----
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=250186.000000
s hg38.chr15_KI270851v1_alt    180058 28 +    263054 -----CAATGGAAATGGAAAAATAGCCTGTTCA
s panTro5.chr15              73763650 28 -  83230942 -----CAATGGAAATGGAAAAATAACCTGTTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74067121 28 -  99763055 -----CAATGGAAATGGAAAAATAACCTGTTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       115931 28 -    281578 -----CAATGGAAATGGAAAAATAACCTGTTCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70974429 28 + 121039945 -----CAATGGAAATGGAAAAATAACCTGTTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164283658 28 - 169600520 -----CAATGGAAATGGAAAAATTACGTGTTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165604573 28 - 171882078 -----CAATGGAAATGGAAAAATAACGTGTTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450946 28 +   2379783 -----CAATGGAAATGGAAAAATAACGTGTTCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       416840 28 +   4116138 -----CAATGGAAATGGAAAAATAACGTGTTCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53848778 28 +  58131712 -----CAATGGAAATGGAAAAATAACGTGTTCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       463885 28 -   3636681 -----CAATGGAAATGGAAAAATAACGTGTTCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       446097 28 -   4457520 -----CGATGGAAATGGAAAAATAACCTGTTCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154477195 28 - 158406734 -----CAGTGGAAATGGAAAAGTAACCTGCCCC
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       333913 28 -   2086007 -----CAGTGGAAATGGAAAAATAACCTGCCCC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       399003 28 +   3831555 -----CAGTGGAAATGGAAAAATAACCTGCCCC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             412180 24 +   3845361 -----CAATGT-TATGGAAAGATA---TGTTTA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59987295 31 -  91889043 AAATGCTGTGGAA--GAATTAATTACCTGTTCA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116241912 29276 + 116334831 I
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I
e saiBol1.JH378292             292021 16612 -   2682657 I

a score=283437.000000
s hg38.chr15_KI270851v1_alt    180086 25 +    263054 GTTGCTTCATCATACCTGTTAAATG
s panTro5.chr15              73763678 25 -  83230942 GTTGCTTCATCTTACCTGTTAAATG
i panTro5.chr15             C 0 I 29320
s panPan2.chr15              74067149 25 -  99763055 GTTGCTTCATCTTACCTGTTAAATG
i panPan2.chr15             C 0 I 29373
s gorGor5.CYUI01000141v1       115959 25 -    281578 GTTGCTTCATCATACCTGTTAAATG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70974457 25 + 121039945 GTTGCTTCATCTTACCTGTTAAATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164283686 25 - 169600520 GTTGCTTCATCATACCTGTTAAATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165604601 25 - 171882078 GTTGCTTCATCATACCTGTTAAATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450974 25 +   2379783 GTTGCTTCATCATACCTGTTAAATG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       416868 25 +   4116138 GTTGCTTCATCGTACCTGTTAAATG
i cerAty1.NW_012001462v1    C 0 I 29864
s chlSab2.chr26              53848806 25 +  58131712 GTTGCTTCATCATACCTGTTAAATG
i chlSab2.chr26             C 0 I 30133
s manLeu1.NW_012102332v1       463913 25 -   3636681 GTTGCTTCATCATACCTGTTAAATG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       446125 25 -   4457520 GTTGCTTCATCATACCTGTTAAATG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154477223 25 - 158406734 GTTGCTTCATCCCACTGGTATAATG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             308633 25 -   2682657 GTTGCTTCATCATACTGGTTAAATG
i saiBol1.JH378292          I 16612 C 0
s cebCap1.NW_016107707v1       333941 25 -   2086007 GTTGTTACATCATACTGGTTAAATG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       399031 25 +   3831555 ATTGCTTCATCATACTGATTAAATG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             412204 25 +   3845361 GTCACCTCATTTTACCTATTAACTG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59987326 25 -  91889043 GTTACTTCATCTTACCTGTTAACTA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116241912 29276 + 116334831 I
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I

a score=95555.000000
s hg38.chr15_KI270851v1_alt    180111 15 +    263054 CAGTAATATGGCATG
s gorGor5.CYUI01000141v1       115984 15 -    281578 AGGTAATACAGGATG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               70974482 15 + 121039945 AGGTAATACAGCATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164283711 15 - 169600520 AGGTAATACAGCGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165604626 15 - 171882078 AGGTAATACAGCGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       450999 15 +   2379783 AGGTAATACAGCGTG
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       463938 15 -   3636681 AGGTAATACAGCGTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       446150 15 -   4457520 AGGTAATACGGCATG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154477248 15 - 158406734 AGGTAATATAGCATG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             308658 15 -   2682657 AGGTAATATGGCATG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       333966 15 -   2086007 AGGTAATATGGCATG
i cebCap1.NW_016107707v1    C 0 I 33237
s aotNan1.NW_018503298v1       399056 15 +   3831555 AGGTAATATGGCATG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             412229 15 +   3845361 AGTTAATATAGAATA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59987351 15 -  91889043 AGGTAATATGGGATG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116241912 29276 + 116334831 I
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I
e panPan2.chr15              74067174 29373 -  99763055 I
e panTro5.chr15              73763703 29320 -  83230942 I
e cerAty1.NW_012001462v1       416893 29864 +   4116138 I
e chlSab2.chr26              53848831 30133 +  58131712 I

a score=19749.000000
s hg38.chr15_KI270851v1_alt    180126 4 +    263054 GTAC
s gorGor5.CYUI01000141v1       115999 4 -    281578 GTAC
i gorGor5.CYUI01000141v1    C 0 I 29417
s nomLeu3.chr6               70974497 4 + 121039945 GTAC
i nomLeu3.chr6              C 0 I 29774
s rheMac8.chr7              164283726 4 - 169600520 GTAC
i rheMac8.chr7              C 0 I 31594
s macFas5.chr7              165604641 4 - 171882078 GTAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       451014 4 +   2379783 GTAC
i macNem1.NW_012011934v1    C 0 I 39716
s manLeu1.NW_012102332v1       463953 4 -   3636681 GTAC
i manLeu1.NW_012102332v1    C 0 I 35630
s colAng1.NW_012115278v1       446165 4 -   4457520 GTAC
i colAng1.NW_012115278v1    C 0 I 32153
s calJac3.chr6              154477263 4 - 158406734 GTAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             308673 4 -   2682657 GTAT
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       399071 4 +   3831555 GTAT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             412244 4 +   3845361 TTAT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               59987366 4 -  91889043 TTAT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116241912 29276 + 116334831 I
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I
e cebCap1.NW_016107707v1       333981 33237 -   2086007 I
e panPan2.chr15              74067174 29373 -  99763055 I
e panTro5.chr15              73763703 29320 -  83230942 I
e cerAty1.NW_012001462v1       416893 29864 +   4116138 I
e chlSab2.chr26              53848831 30133 +  58131712 I

a score=8255.000000
s hg38.chr15_KI270851v1_alt    180130 2 +    263054 ga
s panTro5.chr15              73793023 2 -  83230942 ga
i panTro5.chr15             I 29320 C 0
s panPan2.chr15              74096547 2 -  99763055 ga
i panPan2.chr15             I 29373 C 0
s gorGor5.CYUI01000141v1       145420 2 -    281578 ga
i gorGor5.CYUI01000141v1    I 29417 C 0
s nomLeu3.chr6               71004275 2 + 121039945 ga
i nomLeu3.chr6              I 29774 C 0
s macFas5.chr7              165604645 2 - 171882078 CA
i macFas5.chr7              C 0 C 0
s calJac3.chr6              154477267 2 - 158406734 GA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             308677 2 -   2682657 GA
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       399075 2 +   3831555 GA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             412248 2 +   3845361 GA
i otoGar3.GL873689          C 0 I 43164
s canFam3.chr3               59987370 2 -  91889043 GA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116241912 29276 + 116334831 I
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I
e cebCap1.NW_016107707v1       333981 33237 -   2086007 I
e colAng1.NW_012115278v1       446169 32153 -   4457520 I
e manLeu1.NW_012102332v1       463957 35630 -   3636681 I
e cerAty1.NW_012001462v1       416893 29864 +   4116138 I
e macNem1.NW_012011934v1       451018 39716 +   2379783 I
e rheMac8.chr7              164283730 31594 - 169600520 I
e chlSab2.chr26              53848831 30133 +  58131712 I

a score=4500.000000
s hg38.chr15_KI270851v1_alt    180132 1 +    263054 g
s panTro5.chr15              73793025 1 -  83230942 g
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74096549 1 -  99763055 g
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       145422 1 -    281578 g
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71004277 1 + 121039945 g
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165604647 1 - 171882078 G
i macFas5.chr7              C 0 I 30595
s calJac3.chr6              154477269 1 - 158406734 G
i calJac3.chr6              C 0 I 34838
s saiBol1.JH378292             308679 1 -   2682657 G
i saiBol1.JH378292          C 0 I 34284
s aotNan1.NW_018503298v1       399077 1 +   3831555 G
i aotNan1.NW_018503298v1    C 0 I 31544
s canFam3.chr3               59987372 1 -  91889043 G
i canFam3.chr3              C 0 I 43313
e micMur3.chr9              116241912 29276 + 116334831 I
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I
e otoGar3.GL873689             412250 43164 +   3845361 I
e cebCap1.NW_016107707v1       333981 33237 -   2086007 I
e colAng1.NW_012115278v1       446169 32153 -   4457520 I
e manLeu1.NW_012102332v1       463957 35630 -   3636681 I
e cerAty1.NW_012001462v1       416893 29864 +   4116138 I
e macNem1.NW_012011934v1       451018 39716 +   2379783 I
e rheMac8.chr7              164283730 31594 - 169600520 I
e chlSab2.chr26              53848831 30133 +  58131712 I

a score=92191.000000
s hg38.chr15_KI270851v1_alt    180133 103 +    263054 atggggtttcactgtgttagccaggatggtctcgatctcctgacttcatgatctgcccgcctcggcctcccaaagtgctgggattataggcatgagccaccgc
s panTro5.chr15              73793026 103 -  83230942 atggggtttcaccgtgttagccaggatggtctcgatctcctgacctggtgatctgcccaccttggcctcccaaagtgctgggattacaggcgtgagccactgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74096550 103 -  99763055 atggggtttcaccgtgttagccaggatggtctcgatctcctgacctggtgatctgcccaccttggcctcccaaagtgctgggattacaggcgtgagccactgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       145423 103 -    281578 atggggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatctgcccaccttggcctcccaaagtgctgggattacaggcgtgagccaccgc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71004278 103 + 121039945 atggggtttcaccgtgttagccaggatagtctcgatctcctgacctcgtgatctgcccaccttggcctcccaaagtgctgagattacaggcgtgagccaccgc
i nomLeu3.chr6              C 0 C 0
e micMur3.chr9              116241912 29276 + 116334831 I
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I
e canFam3.chr3               59987373 43313 -  91889043 I
e aotNan1.NW_018503298v1       399078 31544 +   3831555 I
e otoGar3.GL873689             412250 43164 +   3845361 I
e cebCap1.NW_016107707v1       333981 33237 -   2086007 I
e colAng1.NW_012115278v1       446169 32153 -   4457520 I
e manLeu1.NW_012102332v1       463957 35630 -   3636681 I
e cerAty1.NW_012001462v1       416893 29864 +   4116138 I
e macNem1.NW_012011934v1       451018 39716 +   2379783 I
e rheMac8.chr7              164283730 31594 - 169600520 I
e chlSab2.chr26              53848831 30133 +  58131712 I
e saiBol1.JH378292             308680 34284 -   2682657 I
e calJac3.chr6              154477270 34838 - 158406734 I
e macFas5.chr7              165604648 30595 - 171882078 I

a score=4275.000000
s hg38.chr15_KI270851v1_alt    180236 4 +    263054 gccc
s panTro5.chr15              73793129 4 -  83230942 gccc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74096653 4 -  99763055 gccc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       145526 4 -    281578 gccc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71004381 4 + 121039945 gccc
i nomLeu3.chr6              C 0 C 0
s canFam3.chr3               60030686 4 -  91889043 GCAT
i canFam3.chr3              I 43313 C 0
e micMur3.chr9              116241912 29276 + 116334831 I
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I
e aotNan1.NW_018503298v1       399078 31544 +   3831555 I
e otoGar3.GL873689             412250 43164 +   3845361 I
e cebCap1.NW_016107707v1       333981 33237 -   2086007 I
e colAng1.NW_012115278v1       446169 32153 -   4457520 I
e manLeu1.NW_012102332v1       463957 35630 -   3636681 I
e cerAty1.NW_012001462v1       416893 29864 +   4116138 I
e macNem1.NW_012011934v1       451018 39716 +   2379783 I
e rheMac8.chr7              164283730 31594 - 169600520 I
e chlSab2.chr26              53848831 30133 +  58131712 I
e saiBol1.JH378292             308680 34284 -   2682657 I
e calJac3.chr6              154477270 34838 - 158406734 I
e macFas5.chr7              165604648 30595 - 171882078 I

a score=-6802.000000
s hg38.chr15_KI270851v1_alt    180240 3 +    263054 ggc-
s panTro5.chr15              73793133 2 -  83230942 t-c-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74096657 2 -  99763055 t-c-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       145530 3 -    281578 ggc-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71004385 3 + 121039945 agc-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165635243 2 - 171882078 -ga-
i macFas5.chr7              I 30595 I 1
s canFam3.chr3               60030690 3 -  91889043 -GAA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116241912 29276 + 116334831 I
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I
e aotNan1.NW_018503298v1       399078 31544 +   3831555 I
e otoGar3.GL873689             412250 43164 +   3845361 I
e cebCap1.NW_016107707v1       333981 33237 -   2086007 I
e colAng1.NW_012115278v1       446169 32153 -   4457520 I
e manLeu1.NW_012102332v1       463957 35630 -   3636681 I
e cerAty1.NW_012001462v1       416893 29864 +   4116138 I
e macNem1.NW_012011934v1       451018 39716 +   2379783 I
e rheMac8.chr7              164283730 31594 - 169600520 I
e chlSab2.chr26              53848831 30133 +  58131712 I
e saiBol1.JH378292             308680 34284 -   2682657 I
e calJac3.chr6              154477270 34838 - 158406734 I

a score=234477.000000
s hg38.chr15_KI270851v1_alt    180243 77 +    263054 TGATtggattattttaaagcataactctgtctttaaaacattttaaggtattttacctcttaatgataaggatttta-------
s panTro5.chr15              73793135 77 -  83230942 tgattggattattttaaagcgtaattctgtctttaaaacattttaaggcattttacctcttaatgataaggatttta-------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74096659 76 -  99763055 tgattggattattttaaagcataattctgtctttaaaacattttaaggcattttacctcttaatgataagga-ttta-------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       145533 66 -    281578 tgattggattattttaaagcataattctgt----------ttttaaggcattttacctcttaatgataagga-ttta-------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71004388 76 + 121039945 cgattggattattttgaagcataactctgtctttaaaacattttaaggcattttacctcttaatgataagga-ttta-------
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165635246 77 - 171882078 tgattggattattctaaagcataactctgtctttaaaacattttaaagcattttacatcttaatgataaggatttaa-------
i macFas5.chr7              I 1 C 0
s cerAty1.NW_012001462v1       446757 77 +   4116138 TGATtggattattctaaagcataactctgtctttaaaacattttaaggcattttacatcttaatgataaggatttaa-------
i cerAty1.NW_012001462v1    I 29864 C 0
s manLeu1.NW_012102332v1       499587 77 -   3636681 TGATtggattattctaaagcataactctgtctttaaaacattttaaggcattttacatcttaatgataaggatttaa-------
i manLeu1.NW_012102332v1    I 35630 C 0
s colAng1.NW_012115278v1       478322 77 -   4457520 TGATtggattattctaaagcataactctgtctttaaaacattttaaggcattttacatcttaatgataaggatttaa-------
i colAng1.NW_012115278v1    I 32153 C 0
s canFam3.chr3               60030693 79 -  91889043 TGATTGAATCATCTT-AAGCATATCTCT----TTAAAACATTTTGACAGGTACtacctgttaatgatcagaactttttttggtg
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116241912 29276 + 116334831 I
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I
e aotNan1.NW_018503298v1       399078 31544 +   3831555 I
e otoGar3.GL873689             412250 43164 +   3845361 I
e cebCap1.NW_016107707v1       333981 33237 -   2086007 I
e macNem1.NW_012011934v1       451018 39716 +   2379783 I
e rheMac8.chr7              164283730 31594 - 169600520 I
e chlSab2.chr26              53848831 30133 +  58131712 I
e saiBol1.JH378292             308680 34284 -   2682657 I
e calJac3.chr6              154477270 34838 - 158406734 I

a score=5005.000000
s hg38.chr15_KI270851v1_alt    180320 1 +    263054 a
s panTro5.chr15              73793212 1 -  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74096735 1 -  99763055 a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       145599 1 -    281578 a
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71004464 1 + 121039945 a
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165635323 1 - 171882078 a
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       446834 1 +   4116138 a
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       499664 1 -   3636681 a
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       478399 1 -   4457520 a
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154512108 1 - 158406734 A
i calJac3.chr6              I 34838 C 0
s canFam3.chr3               60030772 1 -  91889043 a
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116241912 29276 + 116334831 I
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I
e aotNan1.NW_018503298v1       399078 31544 +   3831555 I
e otoGar3.GL873689             412250 43164 +   3845361 I
e cebCap1.NW_016107707v1       333981 33237 -   2086007 I
e macNem1.NW_012011934v1       451018 39716 +   2379783 I
e rheMac8.chr7              164283730 31594 - 169600520 I
e chlSab2.chr26              53848831 30133 +  58131712 I
e saiBol1.JH378292             308680 34284 -   2682657 I

a score=31934.000000
s hg38.chr15_KI270851v1_alt    180321 9 +    263054 aaaaaccct
s panTro5.chr15              73793213 9 -  83230942 aaaaaccct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74096736 9 -  99763055 aaaaaccct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       145600 9 -    281578 aaaaaccct
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71004465 9 + 121039945 aaaaactct
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165635324 9 - 171882078 gaaaaccct
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       446835 9 +   4116138 gaaaaccct
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       499665 9 -   3636681 gaaaaccct
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       478400 9 -   4457520 gaaaactct
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154512109 9 - 158406734 AAAAACCaa
i calJac3.chr6              C 0 I 2
s saiBol1.JH378292             342964 9 -   2682657 AAAAAccac
i saiBol1.JH378292          I 34284 I 2
s canFam3.chr3               60030773 7 -  91889043 tgaaacc--
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116241912 29276 + 116334831 I
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I
e aotNan1.NW_018503298v1       399078 31544 +   3831555 I
e otoGar3.GL873689             412250 43164 +   3845361 I
e cebCap1.NW_016107707v1       333981 33237 -   2086007 I
e macNem1.NW_012011934v1       451018 39716 +   2379783 I
e rheMac8.chr7              164283730 31594 - 169600520 I
e chlSab2.chr26              53848831 30133 +  58131712 I

a score=86976.000000
s hg38.chr15_KI270851v1_alt    180330 13 +    263054 acaatatcattat
s panTro5.chr15              73793222 13 -  83230942 acaatatcattat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74096745 13 -  99763055 acaatatcattat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       145609 13 -    281578 acaatatcattat
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71004474 13 + 121039945 acaatatcattat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165635333 13 - 171882078 acaatatcattat
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       446844 13 +   4116138 acaatatcattat
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       499674 13 -   3636681 acaatatcattat
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       478409 13 -   4457520 acaatatcattat
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154512120 13 - 158406734 acaatactgttat
i calJac3.chr6              I 2 C 0
s saiBol1.JH378292             342975 13 -   2682657 acattatcattat
i saiBol1.JH378292          I 2 C 0
s cebCap1.NW_016107707v1       367218 13 -   2086007 acaatatcattat
i cebCap1.NW_016107707v1    I 33237 C 0
s aotNan1.NW_018503298v1       430622 13 +   3831555 acaatatcattat
i aotNan1.NW_018503298v1    I 31544 C 0
s canFam3.chr3               60030780 10 -  91889043 ataatgttat---
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116241912 29276 + 116334831 I
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I
e otoGar3.GL873689             412250 43164 +   3845361 I
e macNem1.NW_012011934v1       451018 39716 +   2379783 I
e rheMac8.chr7              164283730 31594 - 169600520 I
e chlSab2.chr26              53848831 30133 +  58131712 I

a score=662316.000000
s hg38.chr15_KI270851v1_alt    180343 87 +    263054 cctgtctataagattaacagtgattccttaatc-taacatgcagtccatgttacattttcct--ggactatctcaaaaatgcctttttta-
s panTro5.chr15              73793235 87 -  83230942 cttgtctataagattaacagtgattccttaatc-taacatgcaatccatgttacattttcct--ggactatctcaaaaatgcctttttta-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74096758 87 -  99763055 cttgtctataagattaacagtgattccttaatc-taacatgcaatccattttacattttcct--ggactatctcaaaaatgcctttttta-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       145622 87 -    281578 cctgtctataagattaacagtgattccttaatc-taacatgcaatccatgttacattttcct--ggactatctcaaaaatgcctttttta-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71004487 87 + 121039945 cctgtttgtaagattaacagtcattccttaatc-taacatgcaatccatgttacattttcct--ggactatctcaaaaatgcctttttta-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165635346 87 - 171882078 cctgtctattagattaacagtgatcccttaatc-taacatgcagtccatattacgttttcct--ggactatctcaaaaatgcctttttta-
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       446857 87 +   4116138 cgtgtctattagattaacagtgatcccttaatc-taacatgcagtccatattacattttcct--ggactgtcttaaaaatgcctttttta-
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       499687 87 -   3636681 cctgtctattagattaacagtgatcccttaatc-taacatgcagtccatattacattttcct--ggactatctcaaaaatgcctttttta-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       478422 87 -   4457520 cctgtctattagattaacagtgatcccttaatc-taacatgcagtccatattacattttcct--ggactatctcaaaaatgcctttttta-
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154512133 88 - 158406734 cctgtctataagattaacagtgattccttaatcttaacatgcagtttgtgttacattttcct--ggactatctcaaaaatgcctttttta-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             342988 87 -   2682657 cctatctataagattaacagtgattccttaatc-taacatgcagtctgtgttacattttcct--ggactatctcaaaaatgccttttcta-
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       367231 82 -   2086007 cc-----ataagagtaacagtgattctttaatc-tgtcatgcagcccgtgttacattgtcct--ggactatctcaaaaatgcctttttta-
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       430635 89 +   3831555 cctgtctataagattaacagtgattccttaatc-taacatgcagtccgcgttacattttccgaaggactatctcaaaaatgcctttttta-
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             455414 87 +   3845361 cctatctacaagattaatagtgattccttaatc-taacacactgtctatgttaaattttcct--ggactgtctcaaaaatgccttgtatt-
i otoGar3.GL873689          I 43164 C 0
s canFam3.chr3               60030790 82 -  91889043 tctgtcca--aaattaa---tgattcttcagtg-taacatgtaatccatgttcaattttcct--gcattatct-aaaaatgcctttttgtt
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116241912 29276 + 116334831 I
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I
e macNem1.NW_012011934v1       451018 39716 +   2379783 I
e rheMac8.chr7              164283730 31594 - 169600520 I
e chlSab2.chr26              53848831 30133 +  58131712 I

a score=6677721.000000
s hg38.chr15_KI270851v1_alt    180430 890 +    263054 ggtg---------------gtaattttgaattaagacctgagcatgttctgcgtattggcattgcttgacatatgcttctagtctc--tttccccaaacaacatggctccaggccctcttctccctgtctctgatcataccgttttctttttcaaagaagcaggttggttattttggagaacttcacattttctgaacttggttgattgcattctcttattctagaccaacatgttcttctgttagttacat------taatctgctggttagatctagaggtttggttggatttgaattcagtctcg--------ttggggcggtgttatgtctggggtcatgctgcatgctttctgt----tggctcaggaggcctgtaatgctcggtggctccccgctttagttctgtgaagctagaccagggaattcatgtgttgcgtat--cctctataaaatcccctaccaaccttgccctctgctgtctggttagcaggaggtacaatttgtacag-caaggacataatctaagcttgacttct-tgaactgccacctccctttaactatttttcataatattgagttggtatcctagcacttgcataggtgaccaccactcaggttttc----------------------------------------------------------------ttttttttgagtatttttatgaactaacagacttttattgatttggtgtttc--------------TTTTCTtttttagc-tt---tttccccctttaatgtgtaa-atatatacatttaaaggcataaatgccctcaagcatgcatttagttgtatgtcaccaatttcgatctgcagtattttg-att---attaactg-aacacattttctaattttcatagtca-tttttt-cttagaattttgggttacttataagtgtatcttgtaattttcaaatatgtggatgaatatttttatttTCTGTGTATACAGAGTCATTTTTAT
s panTro5.chr15              73793322 843 -  83230942 ggtg---------------gtaattttgaattaggacctgagcatgttctcagtgttgacattgcttgacatgtgcttccagtctt--tctccc--aacaacatggctccaggccctcctctccctgt----gatcataccattttctttttcaaagaaggaggttggttattttggagaacttcacattttctgaacttggttgattgcattctcttattctagaccaacatgttcttctgttagttacat------taatctgctggttagatctagaggtttggttggatttgaattcagtctca--------ttggggcggtgttatgtctggggtcatgctgcatgctttctgt----tggctcaggaggcctgtaatgctcggtggctccccgctttagttctgtgaagctagaccagggaattcatgtgttgcgtat--cctctataaaatcccctaccaaacttgccctctgctgtctggttagcaggaggtacaatttgtacag-gaaggacataatctaagcttgacttct-tgaactgccacctccctttaactatttttcataatattgagttggtatcctagcacttgcataggtgaccaccactcaggttttc----------------------------------------------------------------ttttttt-gagtatttttatgaactaatagacttttattgatttggtgttt-----------------ttcttttttagc-tt---tttccctct----------a-atatacacatttaaaggcattaatgccctcaagcatgcatttagttgtatgtcaccaatttcgatctgcagtattttg-att---attaattg-aacacattttctaattttcatagtca-tttttttcttagaattttgggttacttataagtgtattttataattttcaaatatgtggatgaat----------------------------tttttat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74096845 844 -  99763055 ggtg---------------gtaattttgaattaggacctgagcatgttctcagtgttgacattgcttgacatgtgcttccagtctt--tctccc--aacaacatggctccaggccctcctctccctgt----gatcataccgttttctttttcaaagaaggaggttggttattttggagaacttcacattttctgaacttggttgattgcattctcttattctagaccaacatgttcttctgttagttacat------taatctgctggttagatctagaggtttggttggatttgaattcagtctca--------ttggggcggtgttatgtctggggtcatgctgcatgctttctgt----tggctcaggaggcctgtaatgctcggtggctccccgctttagttctgtgaagctagaccagggaattcatgtgttgcgtat--cctctataaaatcccctaccaaccttgccctctgctgtctggttagcaggaggtacaatttgtacag-gaaggacataatctaagcttgacttct-tgaactgccacctccctttaactatttttcataatattgagttggtatcctagcacttgcataggtgaccaccactcaggttttc----------------------------------------------------------------ttttttt-gagtatttttatgaactaatagacttttattgatttggtgtct----------------tttcttttttagc-tt---tttccctct----------a-atatacacatttaaaggcattaatgccctcaagcatgcatttagttgtatgtcaccaatttcgatctgcagtattttg-att---attaattg-aacacattttctaattttcatagtca-tttttttcttagaattttgggttacttataagtgtattttataattttcaaatatgtggatgaat----------------------------tttttat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       145709 844 -    281578 ggtg---------------gtaattttgaattaggacctgagcatgttctctgtgttgacattgcttgacatgtgcttccagtctt--tctccc--aacaacatggctccaggccctcctctccctgt----gatgataccgttttctttttcaaagaagcaggttggttattttggagaacttcacattttctgaacttggttgattgcattctcttattctagaccaacatgttcttctgttagttacat------taatctgctggttagatctagaggtttggttggatttgaattcggtctcg--------ttggggcggtgttatgtctggggtcatgctgcatgctttctgt----tggctcaggaggcctgtaatgctcagtggctccccactttagttctgtgaagctagaccagggaattcatgtgttgcgtat--cctctataaaatcccctaccaaccttgccctctgctgtctggttagcaggaggtacaatttgtacag-gaaggacataatctaagcttgacttct-tgaactgccacctccctttaactatttttcataacattgagttggtatcctagcacttgcataggtgaccaccactcaggttttc----------------------------------------------------------------ttttttt-gagtatttttatgaactaatagacttttattgatttggtgttt----------------tttcttttttagc-tt---tttccctct----------g-atatacacatttaaagacataaatgccctcaagcatgcatttagttgtatgtcaccaattttgatctgcagtattttg-att---attaattg-aacacattttctaattttcatagtca-tttttttcttagaattttgggttacttataagtgtattttataattttcaaatatgtggatgaat----------------------------tttttat
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71004574 850 + 121039945 ggtg---------------gtaattttaaattaagacctgagcatgttctgcgtattggcattggttgacatatgcttctagtctc--tttcccccaacaacgtggctccaggccctcctctccctgtctctgatcatacagttttctttttcaaagaagcaggttggttattttggaaaacttcacattttctgaacttggttgattgcattctcttattctagaccaacatgttcttctgttagttacat------taatctgctggttagatctagagggttggttggatttgaattcagtctcg--------ttggggcggtgttatgtctggagtcatgctgcatgctttctgt----tggctcaggaggcttgtaatgctcggtggctccctgctttagttctgtgaagctagaccagggaattcatgtgttgcatat--cctctataaaatcccctaccaaccttgccttctgctgtctggttagcaggaggtacaatttgtacag-gaaggacatagtctaagctcggcttct-tgaactgccacctccctttaactatttttcataatattgagttggtatcctagcacttgcatagatgaccaccactcaggttttc----------------------------------------------------------------ttttttt-gagtatttttatgagctaatagacttttattgattcggtgtttc--------------ttttcttttttagc-tt---tttccccct----------a-atctacacatttaaaggcataaatgccctcaagcatgcatttagttgtatgacaccaattttgatctgcagtattttt-att---attaattg-aacacattttctaattttcatagtct-tttttttcttagaattttgggttacttataagtgtattttataattttcaaatatgtggatgaat----------------------------ttttt--
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165635433 852 - 171882078 ggtg---------------gtaattttgaattaggacctgagcatgttctgcgtattggcattggttgacatatgcttctagtctc--tttaccccaacaacatggctccaggccctcctctccctgtctctgatcatactgttttctttttcaaagaaacaggttggttattttggagaacttcacattttctgaacttggttggttgcattctc--attctagaccaacacgttcttctgttagttacat------tcgtctgctggttagatctagaggtttggctgggtttgaatgcagtctca--------ttgggtcggtgttatgtctggagtcatgctgcatgctttctgt----tggctcaggaggcctgtaatgcttggtggctccccgctttagttctgtgacgctagaccagggaattcatgtgttgcgtgt--cctctataaaatcccctaccaaccttgtcctctgctgtctggttagcaggaggtaccatttgtacag-gaaggacatgatctaagcttgacttct-tgaactgccacttccctttaactatttttcataatattgagttggtatcctagcacttccaaaggtgaccaccagtcaggttttc----------------------------------------------------------------ttatttt-gagtatttttatgaaccaatagacttttattgatttggtgtttc--------------TTTTCTtttttagc-tt---tttccccct----------a-atatacacatttaaaggcataaatgccctcaagcatgcatttagttgtatgtcacc-attttgatctgcagtattttt-attatcattaattg-aacacattttctaatttccatagtca-tttttt-cttagaattttgggttacttctaagtgagctttgtaattttcaaatatgtggatgaat---------------------------atttttat
i macFas5.chr7              C 0 I 4
s cerAty1.NW_012001462v1       446944 852 +   4116138 ggtg---------------gtaattttgaattaggacctgagcatgttctgcgtattggcattggttgacgtatgcttctagtctc--tttaccccaacaacatggctccaggccctcctctccctgtctctgatcatactgttttctttttcaaagaaacaggttggttattttggagaacttcacattttctgaacttggttgactgcattctc--attctagaccaacacgttcttctgttagttacat------tcgtctgctggttagatctagaggtttggctggatttgaatgcagtctcg--------ttgggtcgatgttatgtctggagtcatgctgcatgctttctgt----tggctcaggaggcctgtaatgcttggtggctccccgctttagttctgtgacgctagaccagggaattcatgtgttgcgtgt--cctctataaaatcccctaccaaccttgtcctctgctgtctggttagcaggaggtaccatttgtacag-gaaggacatgatctaagcttgacttct-tgaactgccacttccctttaactatttttcataatattgagttggtatcctagcacttccaaaggtgaccaccagtcaggttttc----------------------------------------------------------------ttttttt-gagtatttttatgaaccaatagacttttattgatttggtgtttc--------------ttttcttctttagc-tt---tttccccct----------a-atatacacatttaaaagcataaatgccctcaagcatgcatttagttgtatgtcacc-attttgatctgcagtattttt-attatcattaattg-aacacattttctaatttccatagtca-tttttt-cttagaattttgggttacttctaagtgagctttgtaattttcaaatatgtggatgaat---------------------------atttttat
i cerAty1.NW_012001462v1    C 0 I 4
s chlSab2.chr26              53878964 844 +  58131712 ggtg---------------gtgattttgaattaggacctgagcatgttctgcgtattggcattggttgacgtatgcttctagtctc--tttaccccaacagcatggctccaggccctcctttccctgtctctgatcatactgttttctttttcaaagaaacaggttggttattttggagaacttcacattttctgaacttggttgattgcattctc--gttctagaccaacatgttcttctgttagttacat------tcctctgctggttagatctaga-gtttggctggatttgaatgcaatctca--------gtgggtcggtgttatgtctggagt-------cgtgctttctgt----tggctcaggaggcctgtaatgcttggtggctccccgctttagttctgtgacgctagaccagggaattcatgtgttgcgtgt--cctctgtaaaatcccctaccaaccttgtcctctgctgtctggttagcaggaggtaccatttgtacag-gaaggacataatctaagcttgacttct-tgaactgccacttccctttaactatttttcataatattgagttggtatcctagcacttccaaaggtgaccactagtcaggttttc----------------------------------------------------------------ttttttt-gagtatttttatgaaccaatagacttttattgatttggtgtttc--------------ttttcttttttagc-tt---tttccccct----------a-atatacacatttaaaggcataaatgcccacaagcatgcatttagttgtatgtcacc-attttgatctgcagtattttt-attatcattaattg-aacacattttctaatttccatagtca-tttttt-cttagaattttgggttacttctaagtgagctttgtaattttcaaatatgtggatgaat---------------------------atttttat
i chlSab2.chr26             I 30133 I 4
s manLeu1.NW_012102332v1       499774 852 -   3636681 ggtg---------------gtaattttgaattaggacctgagcatgttctgcgtattggcattggttgacgtatgcttctagtctc--tttaccccaacaacatggctccaggccctcctctccctgtctctgatcatactgttttctttttcaaagaaacaggctggttattttggagaacttcacattttctgaacttggttgattgcattctc--attctagaccaacacgttcttctgttagttacat------ttgtctgctggttagatctagaggtttggctggatttgaatgcagtctcg--------ttgggtcgatgttatgtctggagtcatgctgcatgctttctgt----tggctcaggaggcctgtaatgcttggtggctccccgctttagttctgtgatgctagaccagggaattcatgtgttgcgtgt--cctctataaaatcccctaccaaccttgtcctctgctgtctggttagcaggaggtaccatttgtacag-gaaggacatgatctaagcttgacttct-tgaactgccacttccctttaactatttttcataatattgagttggtatcctagcactttcaaaggtgaccaccaatcaggttttc----------------------------------------------------------------ttttttt-gagtatttttatgaaccaatagacttttattgatttggtgtttc--------------ttttcttctttagc-tt---tttccccct----------a-atatacacatttaaaggcataaatgccctcaagcatgcatttagttgtatgtcacc-attttgatctgcagtattttt-attgtcattaattg-aacacattttctaatttccatagtca-tttttt-cttagaattttgggttacttctaagtgagctttgtaattttcaaatatgtggatgaat---------------------------atttttat
i manLeu1.NW_012102332v1    C 0 I 4
s colAng1.NW_012115278v1       478509 854 -   4457520 ggtg---------------gtaatagtgaattaggacctgagcatgttctgcgtattggcattggttgatgtatgcttctagtctc--tttctcccaacaacatggctccaggccctcctctccctgtctctgatcatgctgttttctttttcaaagaaacaggttggttattttggagaacttcgcattttctgaacttggttgattgcattctc--attctagaccaacatgttcttctgttagttacat------tcatctgctggttagatctagaggtgtggctggatttgaatgcagtctca--------ttgggtcggtgttatgtctggagtcatgctgcatgctttctgt----tgactcaggaggcctgtaatgcttggtggctccccgctttagttccgtgacgctagaccagggaattcatgtgttgcgtgt--cctctataaaatcccctaccaaccttgtcctctgctgtctggttagcaggaggtaccatttgtacag-gaaggacatgatctaagcttgacttct-tgaactgccacctccctttaactatttttcataatattgagttggtatcctagcacttccaaaggtgaccaccagtcaggttttc----------------------------------------------------------------ttttttt-gagtatttttacgaaccaatagacttttatcgatttggtgtttc--------------TTTTCTtttttagcttt---tttccccct----------a-atatacacatttaaaggcataaatgccctcaagcatgcatttagttttatgtcaccaattttgatctgcactattttt-attatcattcattg-aacacattttctaatttccatagtca-tttttt-cttagaattttgggttacttctaagtgagctttgtaattttcaaatatgtggatgaat---------------------------atttttat
i colAng1.NW_012115278v1    C 0 I 4
s calJac3.chr6              154512221 858 - 158406734 ggtg---------------gtaattttgaatgaggacccgagcaagttctgtgtgttggcattggttgacatatgcttctaggctc--tttcctctaacaacatggctccaggccctcgtctccctgtctctgatcatactgttttctttttcaaagaagtagatgggttattttggggaacttcacagtttctgaacttggttgattgcattctcttactccagtccaatgtgttcttctattagttaaat-ttctctagtctgctggttagatctagaggtttggttggattTGAACTCAGTCTTG--------TTGGGTCAGGGTTATGTCTGAAGTCATGCTGCATGCATTCTGT----TGGCTCAGGAGGCCTGTCATGCTCAGTGGCTCCCCACTTTAGTTCTGTGAAGATAGACCGGGGAATTGATGTGTTATATGT--CCTCTGTAAAATCCCCGACCAACCtttccctcagctgtctggtgagcaggaggt--agtttgttcag-ggaggacatgacctaagcttgacttac-tgcaccgccacctccttttaactatttttcatggtactgagttgatatcctagcacttccaaaggtgaccaCTACTCGGgttttc----------------------------------------------------------ttttttttttttt-gagtatttttatgtactaatggactgttactggtttggtgtttttta-----------ttttcttttttagc-tt--cccccccccc----------a-acatatacatttaaaggcgtaaataccctcaagcatacatttagctgtatgtcaccaattttgttttgcaatattttt-attatcattaatttcagcacatttgctaattttcatagtca-ttattttcttggaattttg-----------agtgtattttgtcattttcaaatatgtgggtgaat---------------------------attttta-
i calJac3.chr6              C 0 I 1
s saiBol1.JH378292             343075 880 -   2682657 ggtg---------------gcaattttgaatgaggacctgagcaagttgtgtgtgttggcattggttgacataagcttctaggctc--tttcctctaacagcacggctccaggccctcctctccctgtctctgatcatactattttctttttcaaagaagcagataggttattttggggaacttgacattttctgaacttgcttgattgcattctcttaccctagtccaacatgttcttctatgagtttcat-ttctctagtctgctggttagatctggaggtttggttggatttgaattcagtcttg--------ttgggtcggtgttatgtctgaagtcatgctgcctgcattgtgt----tggctcaggaggcccatcgtgctcagtggctccccgcctcagttctgtgaaggtagaccagggaattcatgtgttacatgt--cctctgtaaaatccccgaccaacctttccctcagctgtctggtgagcaggaggtacagtttgttcaa-gaaggatgtgatctaagcttgacttac-tgaaccgccacctccttttcactatttttcataatactgagttgatatcctagcacttgcaaaggtgaccactcctcgggttttct-------ttctttttct------------------------------------tttttttcttttttttt-gagtatttttatgaactaatagacttttattggtttggtgttcttta-----------ttttcttttttcgc-tt-----tccccgc----------a-atatatacatttaaaggcgtaaataccctcaagcatagatttagctgtatgtcaccaattttgatttgtgatatttttaattaccattaatttcaacacagtttctaattttcatagtca-ttttttcctcggaattttgggttacttataagtatattttgtaattttcaaatatgtgg----at---------------------------attttta-
i saiBol1.JH378292          C 0 I 1
s cebCap1.NW_016107707v1       367313 867 -   2086007 ggtg---------------gtaattttgaatgaggacctgagcaagttctgtgtgttggcattggttgacatatgcgtctaggctc--tttcctctaacaacatggctccaggccctcctctccctgtctctgatcgtactgttttctctttcaaagaagcagattggttattttggggaacttcacgttttctgaacttggttgattgcattctcgtactctactccaacatgttcttctatgagtttcat-ttctctagtctgctggttagatctagaggtttggttggatttgaattcggtcttg--------ttgggtccgtgttatgtctgaagtcatgctgcatgcgttctgt----tggctccggaggcctgtcatgctcagtggctccctgctttagttctgtgaagatagaccggggaattcacgtgttatatgt--cctccataaaatccccgaccaacctttcactcagctgtctggtgaccaggagctacagtttgttcag-gaaggacatgatctaagcttgacttac-tgaagtgccacc-ccttttaactcttttgcataatattgagttgatatcctagtgcttccaaaggtgaccactactcgggttttc-------------------------------------------------------tttctttctttttttt-gagtatttttatgaatgaatagacttttatttgtttggtgttttt-------------ttttcttttttagc-tt----tccccccc----------a-atatatacatttaaaggcgtaaataccctcaagcatacatttagctgtatgtcaccaattttgatttgccatattttt----attattaatttcaacacattttctaattttcatagtcattttttttcttggaattttgggttacttataagtatattttgtagttttcaaatatgtggatggat---------------------------attttta-
i cebCap1.NW_016107707v1    C 0 I 1
s aotNan1.NW_018503298v1       430724 868 +   3831555 ggtg---------------gtaattttgaatgaggacctgagcgagttctgtgtgttggcattggttgacatatgcttctaggctc--tttcctctaacaacatggctccaggccctcctctccctgtctctgatcatactgttttctttttcaaagaagcagattggttattttggggaacttcgcattttctgaatgtggttgattgcattctcttactctagtccaacatgttcttctattagttacat-ttctctagtctgccggttagatctagaggtctagttggatttgaattcggtcttg--------ttgggtccgcgttatgtctgaagtcatgctgcatgcattctct----tggctcaggaggcctgtcatgctcagcggctccccgctttagttctgtgaagatagaccggggaattcacgtgttacatgt--cctctataaaatccccgaccaacctttccctcagctgtctggtgagcaggaggtacagtttgttcag-gtaggacatgatctaagcttgacttac-tgaactgccacctccttttaactatttttcataatactgagttgatattttagcacttccaaaggtgaccactactcgggttttc---------------------------------------------------------tttctttttttttt-gagtatttttatgaactaatagacttttattggtttggtgtttttta-----------ttttcttttttagc-tc------cccccc----------a-atatatgcatttaaaggtgtaaataccctcaagcatacatttagctgtatgtcaccaattttgatttgcaatattttt-attatcattaatttcaacacattttctaattttcatagtca-tttttttcttggaattttgggttacttttaagtatattttctaattttcaaatatgtggatgaat---------------------------attttta-
i aotNan1.NW_018503298v1    C 0 I 1
s otoGar3.GL873689             455501 827 +   3845361 ggtg---------------gtgatttcgagtcagggtctgagcagggtacaggtg--ggaagtgggtgctg-atgccccggccgcc--tttccc--agcagcagagcccc-tgctctcctctccctgtgtctggccatactgttct-ttcttcagagaagcagggcacttgttctggagaatttcacattttctgaacttggttgatcacattccc--ttcctagtccagcatgttcttctatcagttatattttctctgatctgctggtcagatctagaggtttgtctgtctttggatcta--tttg--------ttgggtctgaatcatgtctaaagtcatgctgtgtgctctctgt----tgGGT---GGGGGCTGTGGTGCTGGGTG---CCCACCTTCAGTTCTG------------------CCCATGCAGTGTCTGT--CCTCTGTAAGATTCTGTACCCACCTGGGTGCCTGctgtctgggtagcaggagttgtagtttgcacag-ggagggcgtgatccatgtgaaatttct-----cccccactccccttgaaccgttcttcatgatactgagctggtgtcctggcacttcca-aggtgccca---gttaggtttt-----------------------------------------------------------------tttttat-aagtatcgttatgaattaaga---tttTATTGATTTGGTATTATTTAACTTGTTTACTGTttgttttctagc-tt---gtcctttca----------gcatatatacctttaaagggataaatgccctcaagcacatggttagctgtttgtcaccagatttaatttgtagtattttt-atc---attcacttcagtgcgttttctaatttccaaaatca-tttttc-cttggaattttgggttccattgaaatgtattttgtaatttttaaatatatgaggaatt---------------------------gtttttat
i otoGar3.GL873689          C 0 I 12
s canFam3.chr3               60030872 903 -  91889043 ggtgtgtgtgtttttttttttaatttagagtcaagatctaaacatgttttgcatgttacagttggttga--tacccttccattctctatttcctttaatggtataactctaggccttc-tctcc---tctttggtcatactattta-tttgtcaaagaaccagggcatttgttctggagaattatacatatcatgattttggttgattgctctctcttcttttggtctaatg------tctattggttatactctccctaaatagctggttatatgtatagggttgatgagatttgagtacagatttgggttcagttttggttagagt-gtgtctgaggtcatgatgtgtgcttcttgtttcattgcttctgaggcctgtgattcagggtgaccccac-cttcagttctgttcccatggaccagggagttcatatatatagtcttacctctataatatcccctagcagccttGCTCTC----------------------ACAATTTGCACAGCTTAGGACATGATCCTAACTGGATTCCCCTCctcaatcatctccccttatc-atttctca-aatattgagttggtgtcctagtgcttgcaaaggtgacca---atgagGTATcctccctccctcccttttcttcctcaatccctcctttccttccttcATATTGTCTCTTTTCATTTTTCTTCTT-TTGTATCATTATGAGCTCATAAAATTTTATTGATTTGATATtc---------------actaagtttttagc-ttttcttttttcct----------a-tcatatattcttaaaggtataaatgccctcaaacatttatttagctatata-----agtgttgttctatagtattttt-attattgttcattg-----catttt----tttccatagtca-tttttttctgggaattttggatgatttat------gtttcataattttcaaatttgtagagaatt------------------------tttatttttgt
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116241912 29276 + 116334831 I
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I
e macNem1.NW_012011934v1       451018 39716 +   2379783 I
e rheMac8.chr7              164283730 31594 - 169600520 I

a score=1386073.000000
s hg38.chr15_KI270851v1_alt    181320 162 +    263054 TTTATTTTGAATGAATTTTTGAAAACCTatttgtaatttaactgcattgtagtcagcacacatgctctgtaagtttatttctttgaaatctgttgagatttactctatggcctggc--atggcccgatttggtaTTCATGCTGCCTAGA------------------CTTtttttt-----------------aaagca
s panTro5.chr15              73794165 161 -  83230942 tt-attttgaatgaatttttgaaaacctatttctaatttaactgcattgtagtcagcacacatgctctgtaaatttatttctttgaaatctgttgagatttgctctgtggcctggc--atggcccgatttggtattcatgctgcctaga------------------ttttttttt-----------------aaagca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74097689 160 -  99763055 tt-attttgaatgaatttttgaaaacctatttctaatttaactgcattgtagtcagcacacatgctctgtaaatttatttctttgaaatctgttgagatttgctctgtggcctggc--atggcccgatttggtaTTCATGCTGCCTAGA-------------------TTtttttt-----------------aaagca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       146553 161 -    281578 tt-attttgaatgaatttttgaaaacctatttctaatttaactgcattgtagtcagcacatatgctctgtaagtttatttctttgaaatctgttgagatttgctctgtggcctggc--atggcccgatttggtaTTCATGCTGCCTAGA------------------TTTtttttt-----------------aaagca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71005424 158 + 121039945 ---attttgaatgaacttttgaaaacctatttctaatttaactgcattgtagtcagcacacatgctctgtaactttatttctttgaaatctgttgagatttgctctatggcctggc--atggcccgatttgatatTCATGCTGCCTAGA-------------------TTtttttt-----------------aaagca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164315324 142 - 169600520 tt-attttggatgaatttttaaaaacctatttctaatttaactgcattgtcatcagcacacgtgctctgtaagtttatttctttgaaatttgttgatatttgctctatggcctggc--atggccagatttggtaTTCATGCTGCC------------------------------------------------------
i rheMac8.chr7              I 31594 C 0
s macFas5.chr7              165636289 142 - 171882078 tt-attttggatgaatttttaaaaacctatttctaatttaactgcattgtcatcagcacacgtgctctgtaagtttatttctttgaaatttgttgatatttgctctatggcctggc--atggccagatttggtaTTCATGCTGCC------------------------------------------------------
i macFas5.chr7              I 4 C 0
s macNem1.NW_012011934v1       490734 142 +   2379783 tt-attttggatgaatttttaaaaacctatttctaatttaactgcattgtcatcagcagacgtgctctgtaagtttatttctttgaaatttgttgatatttgctctatggcctggc--atggccagatttggtaTTCATGCTGCC------------------------------------------------------
i macNem1.NW_012011934v1    I 39716 C 0
s cerAty1.NW_012001462v1       447800 142 +   4116138 tt-attttggatgaatttttaaaaacctatttctaatttaactgcattgttgtcagcacacgtgctctgtaagttgatttctttgaaatttgttgagatttgctctatggcctggc--atggccagatttgataTTCATGCTGCC------------------------------------------------------
i cerAty1.NW_012001462v1    I 4 C 0
s chlSab2.chr26              53879812 142 +  58131712 tt-attttggatgaatttttaaaaacctatttctaatttaactgcattgtcgtcagcacacgtgctctgtaagttgatttctttgaaatttgttgagatttgctctatggcctggc--atggccagatttgataTTCATGCTGCC------------------------------------------------------
i chlSab2.chr26             I 4 C 0
s manLeu1.NW_012102332v1       500630 142 -   3636681 tt-attttggatgaatttttaaaaacctatttctaatttaactgcattgtcgtcagcacacgtgctctgtaagttgatttctttgaaatttgttgagatttgctctatggcctggc--atggccagatttgataTTCATGCTGCC------------------------------------------------------
i manLeu1.NW_012102332v1    I 4 C 0
s colAng1.NW_012115278v1       479367 142 -   4457520 tt-attttggatgaatttttaaaaacctatttctaatttaactgcattgtcgtcagcacacgtgctctgtaagtttatttctttgaaatttgctgagatttgctctatggcctggc--atggccagatttgataTTCATGCTGCC------------------------------------------------------
i colAng1.NW_012115278v1    I 4 C 0
s calJac3.chr6              154513080 160 - 158406734 tt-atttgggttaaatttttaaaaatgtatttctaatttagctgcattgtagtctgcatacatgctctgtaagtttatttatttgaaatcgattgagatttgctccatggcctggc--atggccatatttgatattcatgctgcctgga-------------------tgcttttt-----------------aaagca
i calJac3.chr6              I 1 C 0
s saiBol1.JH378292             343956 156 -   2682657 gt-atttggtataaatttttaaaaacatatttctaatttaactgcattgtagtctgcatacatgctctgtaa----ctttatttgaaaccgattgagagttgctctgtggcctggc--atggccatatttgataTTCATGCTGCCTGGA-------------------TGCTTTTT-----------------AAAGCA
i saiBol1.JH378292          I 1 C 0
s cebCap1.NW_016107707v1       368181 160 -   2086007 tt-atttgggataaatttttaaaaatgtatttctaatttaactgcattgtagtctgcatacatgctctgtaactttctttatttgaaaccgcttgagagttgctctgtggcctggc--atggccatatttgatattcatgctgcctgga-------------------tgctttta-----------------aaagca
i cebCap1.NW_016107707v1    I 1 C 0
s aotNan1.NW_018503298v1       431593 160 +   3831555 tt-atttgagataaatttttaaaaatgtatttctaatttaactgcattgtagtcttcatacatgctctgtaactttatttatttgaaattgattgagatttgctctgtggcctggc--atggccatatttgataTTCATGCTGCCTGGA-------------------tgcttttt-----------------aaagca
i aotNan1.NW_018503298v1    I 1 C 0
s otoGar3.GL873689             456340 136 +   3845361 -----------------------------tttctagtttaatggcatttt---------acaagttctataacttcacttctttgaaatctgttgagatttgttctgtggcctagcatatggcctgatttgatagtcatactg-------------------------tgttttttgggtttatttgaaataaaaatca
i otoGar3.GL873689          I 12 C 0
s canFam3.chr3               60031775 156 -  91889043 -----------------------tacttatttgtaatttaactgcattatagtcagtgcacatactc--taactttattcctttgaaattt-ttaagatttatttcattgcctggtgtatggtcagatttgCAATTCATGCTACTCAGGTGATGTTGTTTTTGGTATTTGTTTTAT-----------------AAATTG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116241912 29276 + 116334831 I
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I

a score=331307.000000
s hg38.chr15_KI270851v1_alt    181482 56 +    263054 ttctatat-ttaacagaatttgtatgtgtggtattagtttcagagctaggtatgtat
s panTro5.chr15              73794326 56 -  83230942 ttctatat-ttaacagaatttgtatgtgtggtattagtttcagagctaggtatgtat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74097849 56 -  99763055 ttctatat-ttaacagaatttgtatgtgtggtattagtttcagagctaggtatgtat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       146714 56 -    281578 ttctatat-ttaacagaatttgtatgtgtggtattagtttcagagctaggtatgtat
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71005582 56 + 121039945 ttctatat-ttaatagaatttgtatgtgtggtattagtttcagagctaggtgtgtat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164315466 35 - 169600520 ----------------------TGTGTGTGGTATTGGTTTCAGAGCCAGGTATGCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165636431 35 - 171882078 ----------------------TGTGTGTGGTATTGGTTTCAGAGCCAGGTATGCAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       490876 35 +   2379783 ----------------------TGTGTGTGGTATTGGTTTCAGAGCCAGGTATGCAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       447942 35 +   4116138 ----------------------TGTGTGTGGTATTGGTTTCAGAGCCAGGTATACAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53879954 35 +  58131712 ----------------------TGTGTGTGATATTGGTTTCAGAGCCAGGTACACAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       500772 35 -   3636681 ----------------------TGTGTGTGGTATTGGTTTCAGAGCCAGGTATACAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       479509 35 -   4457520 ----------------------TGTGTGTGGTATTGGTTTCAGAGCCAGGTATGCAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154513240 56 - 158406734 ttctgtat-tcAATAGAATTTGTATTTGTGGTGTTAGTCACAGAGCTAGGAATGTGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             344112 55 -   2682657 -TCTGTAT-TTAATAGAATTTGTATTGGTGGTGGTagttacagagctaggaatgtgt
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       368341 56 -   2086007 tTCAATAT-TTAATAGAATTTGTATTTGTGGTGTTAGTTACAGAGCTAGGAATGTAT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       431753 56 +   3831555 ttctgtat-ttaatagaatttgtgtttgtggtgttagttacagagctaggaatgtat
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             456476 55 +   3845361 ttctctaa-ttaataggaatt-tctttgtcatattagttactgagatagtaatgtta
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60031931 55 -  91889043 TTACATATCTTCAGTGCATTTTTGCTTGTGGTATTAGTT--ATAGTTAAACCCATAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             419711 55 +    563711 ttttatatccttgctgaatttttgtttatgttgttagctacagagt--ggcatgtta
i dasNov3.JH562051          N 0 C 0
e micMur3.chr9              116241912 29276 + 116334831 I
e proCoq1.NW_012148396v1     13473147 29376 +  16154928 I

a score=1138617.000000
s hg38.chr15_KI270851v1_alt    181538 75 +    263054 ttctcccattgtgattgtggatttgtttatttctgcttgtagttctttcaCACAGTTTGTTCTTTTCATTTTACC
s panTro5.chr15              73794382 75 -  83230942 ttctcccattgtgattgtgggtttgtttatttctgcttgtagttctttcaCACAGTTTGTTCTTTTCATTTTACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74097905 75 -  99763055 ttctcccattgtgattgtgggtttgtttatttctgcttgtagttctttcaCACAGTTTGTTCTTTTCATTTTACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       146770 75 -    281578 ttctcccattgtgattgtgggtttgtttatttctgcttgtagttctttcaCACAGTTTGTTCTTTTCATTTTACC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71005638 75 + 121039945 ttctcccattgtgattgtggatttgtttatttctgcttgtggttctttcaCACAGTTTGTTCTTTTCATTTTACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164315501 75 - 169600520 TTCTCTCATTGTGATTGTGGATTTGTTTATATCTGCTTGTAGTTCTTTCACACAGTTTGTTCTTTTCATTTTACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165636466 75 - 171882078 TTCTCTCATTGTGATTGTGGATTTGTTTATATCTGCTTGTAGTTCTTTCACACAGTTTGTTCTTTTCATTTTACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       490911 75 +   2379783 TTCTCTCATTGTGATTGTGGATTTGTTTATATCTGCTTGTAGTTCTTTCACACAGTTTGTTCTTTTCATTTTACC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       447977 75 +   4116138 TTCTCTCATTGTGGTTGTGGATTTGTTTATATCTGCTTGTAGTTCTTTCACACAGTTTGTTCTTTTCATTTTACC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53879989 75 +  58131712 TTCTCTCATTGTGGTTGTGGATTTGTTTATACCTGCTTGTAGTTCTTTCACACAGTTTGTTCTTTTCATTTTACC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       500807 75 -   3636681 TTCTCTCATTGTGGTTGTGGATTTGTTTATATCTGCTTGTAGTTCTTTCACACAGTTTGTTCTTTTCATTTTACC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       479544 75 -   4457520 TTCTCTCATTGTGATTGTGGATTTGTTTATTTCTGTTTGTAGTTTTTTCACACAGTTTGTTCTTTTCATTTTACC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154513296 74 - 158406734 TTCT-CCATTGTGATTGTGGATTTGTTTATTTTTGCTTGTGGTTCTTTGACATGGTTTGTTCTTTTCACTTTACC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             344167 75 -   2682657 ttctcccattgtgattgtggatttgtttatttttgcttgtagttctttcaCACGGTTTGTTCTTTTCGTTTTACC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       368397 75 -   2086007 TTCTCGCATTGTGATTGTGGTTTTGTTTATTTTTGCTTGTAGTTCTTTCACACAGTTTGTTCTTTTCATTTTACC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       431809 75 +   3831555 ttctcccattgtgattgtggatttgtttatttttgcttgtagttctttcaCACGGTTTGTTCTTTTCATTTTACC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116271188 68 + 116334831 TTCTCTCATTGTGATTGTAGATTTATGTA---CTTCTTGTAGTTCTTTCACACA----GTTGTTTTCATTTTATC
i micMur3.chr9              I 29276 C 0
s proCoq1.NW_012148396v1     13502523 75 +  16154928 ttctcccattgtgattgtggatttatctatttctccttgtagttctttcaCACAGTTTGTTGTTTTCATTTTATC
i proCoq1.NW_012148396v1    I 29376 C 0
s otoGar3.GL873689             456531 74 +   3845361 ttttcccattatgactg-ggatttatttatttctccttgtagatctttcacacaatttgttgttttCAAACTGTA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60031986 70 -  91889043 -----CCATTATGGTTATGGATTTGTCTGTTTCCATTTATAGTTCTTTTGCATGATTTGTTCTGATTGTTTTATC
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             419766 74 +    563711 atctcctactgtgaaaggggatttgtctttttctccttttagttctttcaCGCAATTTGTTCTCG-CATTTTATC
i dasNov3.JH562051          C 0 C 0

a score=8277017.000000
s hg38.chr15_KI270851v1_alt    181613 528 +    263054 TGTTGA-----TTGATCAATGGACTGAT-TCTGGTTTCTGTATATACAGAGTCATTTTTTACAGGTCAGAACTGTAGAAATAATGAGAAAGTGACACTTGTACGCATAGCTGATTTGGAGAACCATAATAACGATGGAGGCTTCTAGACTGTGATTGACGGGAAAGTGTATGATATAAAGGACTTCCAGACACAGTCGTTAACAGAAAATAGTATTCTTGGTAAGA---TTACACT-TGTTATTTCCTGGTTAAAAGTTACAGCCTGTATCATTTTAAGC-AGAGTATTTGGCTTA---TAAATGATTCCTTTAGTTTTGTGCCA-GCC-CCCGCATAT-TTTAATGTATCTG-TGGCTTTGGTGTC-TGTCTTATCAACAAATTCA-G--CACATTCGAAGAATTTCCTTTCATTATGT---------------------ATCTTTTG----------TTTTAATA--------------------------CTTG---GAA------------------------------------------CTCATTT----CAAGTTC-----------CGAGTTGGCCCAGGCAACCCTGGG-AGACAGTGGGAGGTCATTATA-----------------------------------------------------TTCTGGTAACCCTCACTTTTGAGTTAAGA-GCCTAACTTATTTCCTACT
s panTro5.chr15              73794457 528 -  83230942 TGTTGA-----TTGATCAATGGACTGAT-TCTGGTTTCTGTATATACAGAGTCATTTTTTACAGGTCAGAACTGTAGAAATAATGAGGAAGTGACACTTATACGCAAAGCTGATTTGGAGAACCATAATAAAGATGGAGGCTTCTGGACTGTGATTGACGGGAAAGTGTATGATATAAAGGACTTCCAGACACAGTCATTAACAGGAAATAGTATTCTTGGTAAGA---TTACACT-TCTTATTTCCTGGTTAAAAGTTACAGCCTGTATCATTTTAAGC-AGAGTATTTGGCTTA---TAAATGATTTCTTTAGTTTTGTGCCA-GCC-CCCACATAT-TTTAATGTATCTG-TGGCTTCGATGTC-TGTCTTATCAACAAATTCA-G--CACATTTGAAGAATTTCCTTTGATTATGC---------------------ATTTTTTG----------TTTTAATA--------------------------CTTG---GAA------------------------------------------CTCATTT----CAAGTTC-----------CGAGTTGGCCCAGGCAACCCTGGG-AGACAGTGGAAGGTCATTATA-----------------------------------------------------CTCTGGTAACCCTCACTTTTGAGTTAAGC-GCCTAACTTATTTCCTATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74097980 528 -  99763055 TGTTGA-----TTGATCAATGGACTGAT-TCTGGTTTCTGTATATACAGAGTCATTTTTTACAGGTCAGAACTGTAGAAATAATGAGGAAGTGACACTTATACGCAAAGCTGATTTGGAGAACCATAATAAAGATGGAGGCTTCTGGACTGTGATTGACGGGAAAGTGTATGATATAAAGGACTTCCAGACACAGTCGTTAACAGGAAATAGTATTCTTGGTAAGA---TTACACT-TGTTATTTCCTGGTTAAAAGTTACAGCCTGTATCATTTTAAGC-AGAGTATTTGGCTTA---TAAATGATTTCTTTAGTTTTGTGCCA-GCC-CCCGCATAT-TTTAATGTATCTG-TGGCTTTGGTGTC-TGTCTTATCAACAAATTCA-G--CACATTTGAAGAATTTCCTTTGATTATGC---------------------ATTTTTTG----------TTTTAATA--------------------------CTTG---GAA------------------------------------------CTCATTT----CAAGTTC-----------TGAGTTGGCCCAGGCAACCCTGGG-AGACAGTGGAAGGTCATTATA-----------------------------------------------------CTCTGGTAACCCTCACTTTTGAGTTAAGC-GCCTAACTTATTTCCTATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       146845 528 -    281578 TGTTGA-----TTGATCAATGGACTGAT-TCTGGTTTCTGTATATACAGAGTCATTTTTTACAGGTCAGAACTGTAGAAATAATGAGGAAGTGACACTTATACGCAAAGCTGATTTGGAGAACCATAATAAAGATGGAGGCTTCTGGACTGTGATTGACGGGAAAGTGTATGATATAAAGGACTTCCAGACACAGTCGTTAACAGGAAATAGTATTCTTGGTAAGA---TTACACT-TCTTATTTCCTGGTTAAAAGTTACAACCTATATCATTTTAAGC-AGAGTATTTGGCTTA---TAAATGATTTCTTTAGTTTTGTGCCA-GCC-CCCGCATAT-TTTAATGTATCTG-TGGCTTCGATGTC-TGTCTTATCAACAAATTCA-G--CACATTTGAAGAATTTTCTTTGATTATGC---------------------ATTTTTTG----------TTTTAATA--------------------------CTTG---GAA------------------------------------------CTCATTT----CAAGTTC-----------TGAGTTGGCCCAGGCAACCCTGGG-AGACAGTGGAAGGTCATTATA-----------------------------------------------------CTCTGGTAACCCTCACTTTTGAGTTAAGC-GCCTAACTTATTTCCTATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71005713 529 + 121039945 TGTTGA-----TTGATCGATGGACTGAT-TCTGGTTTCTGTATGTACAGAGTCATTTTTTACAGGTCAGAACTGTAGAAATAATGAGGAAGTGACACTTATACGCAAAGCTGATTTGGAGAACCATAATAAAGATGGAGGCTTCTGGACTGTGATTGATGGGAAAGTATATGATATAAAGGACTTCCAGACACAGTCGTTAACAGGAAATAGTATTCTTGGTAAGA---TTACACT-TCTTACTTCCTGATTAAAAGTTACATCCTGTATCGTTTTAAGC-AGAGTATTTGGCTTA---TAAATGATTTCTTTAGTTTTGTGCCA-GCCACCCACATAT-TTTAATGTATCTG-TGGCTTTGGTGTC-TGTCTTATCAACAAATTCA-G--CACATTTGAAGAATTTCATTTCATTATGC---------------------ATTTTTTG----------TTTTAATA--------------------------CTTG---AAA------------------------------------------CTCATTT----CAAGTTC-----------TGAGTTGGCCCAGGCAACGCTGGG-AGACAGTGGGAGGTCATTATA-----------------------------------------------------CTCTGGTAACCCTCACTTTTGAGTTAAAC-GCCTAACTTATTTCCTACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164315576 527 - 169600520 TGTTGA-----TTGATCGATGGACTGAT-TCTGGTTTCTGTATATACAGAGTCATTTTTTACAGGTCAGAACTGTAGAAATAATGAAGAAGTGACGCTTATACGCAAAGCTGATTTGGAGAACCATAATAAAGATGGAGGCTTCTGGACTGTGATTGAGGGGAAAGTGTATGATATCAAGGACTTCCAGACGCAGTCGTTAACAGGAAATAGTATTCTTGGTGAGA---TTACACT-TCTGATTTCATGGTTAAAAGTTATAGCCTGTGT-ATTTTAAGC-AGAGTATTTGGTTTA---TAAATGATTTCTTTAGTTTTGTGCCA-GCC-CCCACATAT-TTTAGTGTATCTG-TGGCTTTGGTGTC-TGTCTTATCAACAAATTCA-G--CACATTTGAAGAATTTCCTATCATTATGC---------------------ATTTTTTG----------TTTTAAGA--------------------------CTTG---GAA------------------------------------------CTCATTT----CAAGTTC-----------TGAGTTGGCCCAGGCAACCCTGAG-AGACAGTGGGAGGTCATTATC-----------------------------------------------------CTCTGGTAACCCTCACTTTTGAGTTAAGC-GCCTAACTTGTTTCCTACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165636541 527 - 171882078 TGTTGA-----TTGATCGATGGACTGAT-TCTGGTTTCTGTATATACAGAGTCATTTTTTACAGGTCAGAACTGTAGAAATAATGAAGAAGTGACGCTTATACGCAAAGCTGATTTGGAGAACCATAATAAAGATGGAGGCTTCTGGACTGTGATTGAGGGGAAAGTGTATGATATAAAGGACTTCCAGACGCAGTCGTTAACAGGAAATAGTATTCTTGGTGAGA---TTACACT-TCTGATTTCATGGTTAAAAGTTATAGCCTGTGT-ATTTTAAGC-AGAGTATTTGGCTTA---TAAATGATTTCTTTAGTTTTGTGCCA-GCC-CCCACATAT-TTTAATGTATCTG-TGGCTTTGGTGTC-TGTCTTATCAACAAATTCA-G--CACATTTGAAGAATTTCCTATCATTATGC---------------------ATTTTTTG----------TTTTAAGA--------------------------CTTA---GAA------------------------------------------CTCATTT----CAAGTTC-----------TGAGTTGGCCCAGGCAACCCTGAG-AGACAGTGGGAGGTCATTATC-----------------------------------------------------CTCTGGTAACCCTCACTTTTGAGTTAAGC-GCCTAACTTGTTTCCTACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       490986 527 +   2379783 TGTTGA-----TTGATCGATGGACTGAT-TCTGGTTTCTGTATATACAGAGTCATTTTTTACAGGTCAGAACTGTAGAAATAATGAAGAAGTGACGCTTATACGCAAAGCTGATTTGGAGAACCATAATAAGGATGGAGGCTTCTGGACTGTGATTGAGGGGAAAGTGTATGATATAAAGGACTTCCAGACGCAGTCGTTAACAGGAAATAGTATTCTTGGTGAGA---TTACACT-TCTGATTTCATGGTTAAACGTTATAGCCTGTGT-ATTTTAAGC-AGAGTATTTGGCTTA---TAAATGATTTCTTTAGTTTTGTGCCA-GCC-CCCACATAT-TTTAATGTATCTG-TGGCTTTGGTGTC-TGTCTTATCAACAAATTCA-G--CACATTTGAAGAATTTCCTATCATTATGC---------------------ATTTTTTG----------TTTTAAGA--------------------------CTTG---GAA------------------------------------------CTCATTT----CAAGTTC-----------TGAGTTGGCCCAGGCAACCCTGAG-AGACAGTGGGAGGTCATTATC-----------------------------------------------------CTGTGGTAACCCTCACTTTTGAGTTAAGC-GCCTAACTTGTTTCCTACT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       448052 528 +   4116138 TGTTGA-----TTGATCGATGGACTGAT-TCTGGTTTCTGTATATACAGAGTCATTTTTTACAGGTCAGAACTGTAGAAATAATGAAGAAGTGACGCTTATACGCAAAGCTGATTTGGAGAACCATAATAAAGATGGAGGCTTCTGGACTGTGATTGACGGGAAAGTGTATGATATAAAGGACTTCCAGACGCAGTCGTTAACAGGAAATAGTATTCTTGGTGAGA---TTACACT-TCTTATTTCATGGTTAAAAGTTATAGCCTGTGTCATTTTAAGC-AGAGTATTTGGCTTA---TAAATGATTTCTTTAGTTTTGTGCCA-GCC-CCCACATAT-TTTAATGTATCTG-TGGCTTTGATGTC-TGTCTTATCAACAAATTCA-G--CACATTTGAAGAATTTCCTATCATTATGC---------------------ATTTTTTG----------TTTTAAGA--------------------------CTTG---GAA------------------------------------------CTCATTT----CAAGTTC-----------TGAGTTGGCCCAGGTAACCCTGAG-AGACAGTGGGAGGTCATTATC-----------------------------------------------------CTCTGGTAACCCTCACTTTTGAGTTAAGC-ACCTAACTTATTTCCTGCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53880064 529 +  58131712 TGTTGA-----TTGATCGGTGGACTGAT-TCTGGTTTCTGTATATACAGAGTCATTCTTTACAGGTCAGAACTGTAGAAATAATGAAGAAGTGACGCTTATACGCAAAGCTGATTTGGAGAACCATAATAAAGATGGAGGCTTCTGGACTGTGATTGACGGGAAAGTGTATGATATAAAGGACTTCCAGACGCAGTCGTTAACAGGAAGTAGTATTCTTGGTGAGA---TTACACT-TCTTATTTCATGGTTAAAAGTTATAGCCTGTGTCATTTTAAGC-AGAGTATTTGGCTTA---TAAATGATTTCTTTAGTTTTGTGCCA-GCC-CCCACATAATTTTAATGTATCTG-TGGCTTTGGTGTC-TGTCTTATCAACAAATTCA-G--CACATTTGAAGAATTTCCTATCATTATGC---------------------ATTTTTTG----------TTTTAAGA--------------------------CTTG---GAA------------------------------------------CTCATTT----CAAGTTC-----------TGAGTTGGCCCAGGCAACCCTGGG-AGACAGTGGGAGGTCATTATA-----------------------------------------------------CTCTGGTAACCCTCACTTTTGAGTTAAGC-GCCTAACTTATTTCCTACT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       500882 528 -   3636681 TGTTGA-----TTGATCGATGGACTGAT-TCTGGTTTCTGTATATACAGAGTCATTTTTTACAGGTCAGAACTGTAGAAATAATGAAGAAGTGACGCTTATACGCAAAGCTGATTTGGAGAACCATAATAAAGATGGAGGCTTCTGGACTGTGATTGACGGGAAAGTGTATGATATAAAGGACTTCCAGACGCAGTCGTTAACAGGAAATAGTATTCTTGGTGAGA---TTACACT-TCTTATTTCATGGTTAAAAGTTATAGCCTGTGTCATTTTAAGC-AGCGTATTTGGCTTA---TAAATGATTTCTTTAGTTTTGTGCCA-GCC-CCCACATAG-TTTAATGTATCTA-TGGCTTTGGTGTC-TGTCTTATCAACAAATTCA-G--CACATTTGAAGAATTTCCTATCATTATGC---------------------GTTTTTTG----------TTTTAAGA--------------------------CTTG---GAA------------------------------------------CTCATTT----CAAGTTC-----------TGAGTTGGCCCAGGCAACCCTGAG-AGACAGTGGGAGGTCATTATC-----------------------------------------------------CTCTGGTAACCCTCACTTTTGAGTTAAGC-GCCTAACTTATTTCCTACT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       479619 581 -   4457520 TGTTGA-----TTGATCGATGGACTGAT-TCTGGTTTCTGTATATACAGAGTCATTTTTTACAGGTCAGAACTGTAGAAATAATGAAGAAGTGACGCTTATACGCAAAGCTGATTTGGAGAACCATAATAAAGATGGAGGCTTCTGGACTGTGATTGACGGGAAGGTGTACGATATAAAGGACTTCCAGACGCAGTCGTTAACAGGAAATAGTATTCTTGGTGAGA---TTACACT-TCTTATTTCATGGTTAAAAGTTATAGCCTGTGTCGTTTTAAGC-AGAGTATTTGGCTTA---TAAATGATTTCTTTAGTTTTGTGCCA-GCC-CCCACATAT-TTTAATGTATCTG-TGGATTTGGTGTC-TGTCTTATCAACAAATTCA-G--TACATTTGAAGAATTTCCTATCATTATGC---------------------ATTTTTTG----------TTTTAACA--------------------------CTTG---GAA------------------------------------------CTCATTT----CAAGTTC-----------TGAGTTGGCCCAGGCAACGCTGGG-AGACAGTGGGAGGTCATTATTTCAAGTTCTGAGTTGGCCCAGGCAACGCTGGGAGACAGTGGGAGGTCATTATACTCTGGTAACCCTCACTTTTGAGTTAAGC-GCCTAACTTACTTCCTACT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154513370 513 - 158406734 TATTGA-----TTGATCGATGGACTGAT-TCTGCTTTCTGTATATACAGAGTCATTTTTTACAGGTCAGAACTGTAGAAATAATGAGGAAGTAACACTTATACGCAAAGCTGATTTGGAGAACCATAATAAAGATGGAGGCTTCTGGACTGTGATTGATGGGAAAGTGTATGATATAAAGGACTTCCAGACTCAGTCGTTAACAGGAAATAGTATTCTTGGTAAGT---TATACCT-TCTTATTTAATGGTTAGAAGTTACAGCATGTGTCATTTTAAGC-AGAGTATTTGGC------------------TTAGTCTTGTGCTA-GCC-CCCACATAT-TTTAATGTATCTG-TAACTTTGGTGTT-TATCTTATCAACAAATTCA-G--CACATTTGAAGAATGTGCTATCATTATGC---------------------ATTTTTTG----------TTTTAATA--------------------------CTGG---GAA------------------------------------------CTCATTT----CAAGTTC-----------TGAGTTGACCAAGGCAACTCTGGG-AGACAGTGGGAGGTCATTATA-----------------------------------------------------CTCTGGTAACCCTCACCTTTGAGTTAAGT-GCCTAACTTATTTCCTACT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             344242 511 -   2682657 TATTGA-----TTGATCGATGGACTGAT-TCTGCTTTCTGTATATGCAGAGTCATTTTTTACAAGTCAGAACTGTAGAAATAATGAGGAAGTAACACTTATACGCAAAGCTGATTTGGAGAACCATAATAAAGATGGAGGCTTCTGGACTGTGATTGATGGGAAAGTGTATGACATAAAGGACTTCCAGACTCAGTCGTTAACAGGAAATAGTATTCTTGGTAAGG---TTACCCT-TCTTATTTAGTGGTTAGAAGTCACAGCATGTGTCATTTTAAGC-AGAGTATTTGGC------------------TTAGTTTGGTGCTA-GCC-CCCACGTA--TTTAATGTATCTG-TAACTTTGGTGTT-TATCTTACCAACAAATTCA-G--CACATTTGAAGAATTTCCTGTCATTACGC---------------------ATTTTTTG----------TTTTAATA--------------------------CTGG---GAA------------------------------------------CTCATTT----CAAGTTC-----------TGAGTTGACCCAGGCGACTCTGGG-AGACAGTGGGAGGTCATTCTA-----------------------------------------------------CTCTGGTAGCCCTCAACTTTGAGTTCAGC-GCCTAACTTA-TTCCTACT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       368472 509 -   2086007 T----A-----TTGATCGATGGACTGAT-TCTACTTTCTGTATATACAGAGTCATTTTTTACAGGTCAGAACTGTAGAAATAATGAGGAAGTAACACTGATACGCAAAGCTGATTTGGAGAACCATAATAAAGATGGAGGCTTCTGGACTGTGATTGATGGGAAAGTGTATGATATAAAGGACTTCCAGACTCAGTCGTTAACAGGAAATAGTATTCTCGGTAAGG---TTACCCT-TCTTATTTAATGGTTAGAAGTTACAGCATGTGTCATTTCAAGC-AGAGTATTTGGC------------------TTAGTTTTGTGCTA-GCC-CCCACATAT-TTTAATGTGTCTG-TAACTTTGGTGTT-TATCTTATCAACAAATTCA-G--CACATTTGAAGAATTTCCTATCATTATGC---------------------ATGTTTTG----------TTTTAATA--------------------------CTGG---GAA------------------------------------------CTCATTT----CAAGTTC-----------TGAGTTGACGCAGGCAACTCTGGG-AGACAGTGGGAGGTCATTATA-----------------------------------------------------CTCTGCTAACCCTCACCTTTGAGTTAAGC-GCCTAACTTATTTCCTACT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       431884 513 +   3831555 TATTGA-----TTGATCGATGGACTGAT-TCTGCTTTCTGTATATACAGAGTCATTTTTTACAGGTCAGAACTGTAGAAATAATGAGGAAGTAACACTTATACGCAAAGCTGATTTGGAGAACCATAATAAAGATGGAGGCTTCTGGACTGTGATTGATGGGAAAGTGTATGATATAAAGGACTTCCAGACTCAGTCGTTAACAGGAAACAGTATTCTTGGTAAGG---TTACCCT-TCTTATTTAATGATTAGAAGTTACAGCATGTGTCATTTTAAGC-AGAGTATTTGGC------------------TTAATTTTGTGCTA-GGC-CCCACATAT-TTTAATGTATCTG-TAACTTTGGTGTT-TATCTTATAAACAAATTCA-G--CACATTTGAAGAATTTCCTATCATTATGC---------------------ATTTTTTG----------TTTTAATG--------------------------CTGG---GAA------------------------------------------CTCATTT----CAAATTC-----------CGAGTTAACCCAGGCAACTCTGGG-AGACAGTGGGAGGTCATTATA-----------------------------------------------------TTCTGGTAACCCTCACCTTTGAGTTAAGC-GCCTAACTTATTTCCTACT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116271256 536 + 116334831 Tattga-----ttgattgattgattgat-tTTGGTTTCTCTATATACAGAATCATTTTTTACAGGTCAGAACTGTAGAAATAATGAGGAAGTGACGCTTATACGCAAAGCTGATTTGGAGAACCACAATAAAGATGGAGGCTTCTGGACTGTGATTGATGGGAAAGTGTATGACATAAAGGACTTCCAGACACAGTCATTAACAGGAAATAGTATTCTTGGTAAGG---CCGCATTATTTTACTTCATGATTAAAAGTTGCAA--TGTGTTATTTAAAGT-AGAGCATTTGGCTTATAGTAAAGGATCTCTTTAATACTGCTCCA-GCC-CGTACACAT-TTTAATGTATCTGTTGACTTTGGTGTCTTGTCTTATCAACAAATTCAGG--CACATTTGAAGAATTTCTTATCATTATGC---------------------ATTTTTC-----------TTCCAATA--------------------------TTTGTTAGAA------------------------------------------CTTATTC----CAAGTTC-----------CAAGTTGGCCTAGATAACCCTGGG-TGAGGGTTAGAGATCATTATA-----------------------------------------------------CTCTGGTAACCCTCGCTGATGAGTTAACCTGCCTAACTTATTTTCTATT
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13502598 532 +  16154928 T----a-----ttgattgattgattgat-tttgattTCTCTATATGCAGAATCATTTTTTACAGGTCAGAACTGTAGAAATAATGAGGAAGTGACGCTTATACGTAAAGCTGATTTGGAGAACCACAATAAAGATGGAGGCTTCTGGACTGTGATTGATGGGAAAGTGTATGACATAAAGGACTTCCAGACACAGTCGTTAACGGGAAATAGTATTCTTGGTAAGG---CTGCATTTTTTCACTCCATGGTTAAAAGTTGTAA--CGTATCATTTTAAGC-AGAGCATTTGGCTTATAATAAATGATCTCTTTAATTCTGCTCGA-GCC-CCTACACAT-TTTAATGTATCTGTTGACTTTGGTGTC-CATCTTATCAGCAAATTCAGG--CATATTTGAAGAATTTCTCATCATTATGC---------------------ATTTTTTG----------TTCCAATA--------------------------CTTGTTGGAA------------------------------------------CTTGTTC----CAAGTTC-----------TGAGTTGGCCCAGATAACCCTGGG-AGAGAGTGAAAGATCATTATA-----------------------------------------------------CTCTGGTAACCCTCGCTTATGAGTTAACCTGTCTAACTTAATTCCTATT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             456605 511 +   3845361 T--TGA-----TTGATTAACTGATTGAT-TTTGCTTTCTCTATATACAGAGTCATTTTTTACAGGTCAGAATTGTAGAAATAATGAGGAAGTGACACTTATACGCAAAGCTGATCTAGAGAACCACAACAAAGATGGAGGCTTCTGGACTGTGATTGACGGGAAAGTCTATGACATAAAGGACTTCCAGACCCAGTCGCTCACAGGAAATAGCATTCTGGGTAAGG---TCACATT-TTTTACTCCATGGCTAAAAGTTGCAA--TGTGTCGTTTTATGCAAGGGTGTTTGGCTTA---TAAATGATCTCTTTAATTCTGCTTCA-GTC-CCTGCATAT-TTTAATATATGTG---------------TGACTTACCAAGAAATTCAGG--TACATTTGAAGAA-TTCTCAC--TGATAT---------------------ACTTTTTG----------TTTCAATG--------------------------TTTGTGGGGA------------------------------------------CTTA-------CCAGTTC-----------TGTGTTGGCCCAGACAAATCTGGGAAGAGGGTGAGAGATCATTGTA-----------------------------------------------------CTCTGGTAA-CCTCACTTTGGAGTTCACCTGCCTAACTTACTTCCTACT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56131119 611 + 145441459 TGTTGAGACATTTGATCTGATGACTGATGTTTGGTTTCTATTTCTTTAGAGTCATTTTTCACTGGTCAGAACTGTAGAAATAATGAGGAGGTAACACTGATACGCAAAGCTGATTTGGAGAACCATAATAAAGATGGTGGCTTCTGGACTGTAATTGATGGAAAAGTATATGGTATAAAAGACTTTCAGACACAATCCTTAACAGGAAATAGTATACTGGGTAAGGCTTTTTTACT-TTTTATTCCATTGTTAAAAATTGCATTATGTGTGATTTTAAGT-AAAGTCCACAGTTTA---TGAATAAGTTGTTAAATTT------A-GCC-C---CAGGT-TTAACAAAATCTG-GGACTTTGGT-TC-TGGCTTCACAACAAGTTTA-GGTTCAAGTTGAAGAATTTCTCATCATCAAGCTTTTCTTCCTGTTGTTTttttattttttg----------agataagagttttctccgtgtagctcttggctgtcttg---gaatcttgtagaccaggctggccttgcactcagagatctgcctgtctctttttccccaagtactTTGTAGAACTTGAGTTGCCCGAGGCAAGCGTGGG-AGA--GTGGCAG---ATTCTT-----------------------------------------------------CCGAGACAGC-----------------GA-CCCAGACTCACTTCCTGTC
i mm10.chr7                 N 0 C 0
s canFam3.chr3               60032056 535 -  91889043 TATTGA-----TTCAT--------TGAT-TTTGGTTTCTGTATATACAGAGTCTTTTTTTACAGGTCAGAACTGTAGAAATAATGAGGAGGTGACACAGATACGCAAAGCTGATTTGGAGAACCACAATAAAGATGGAGGCTTCTGGACTGTGATCGATGGGAAAGTGTATGATATAAAGGACTTCCAGACACAGTCATTAACAGGAAATAGTATTCTTGGTAAGG---CTTCACT-TTCCACTTCATGGTTAAAAGTTGTAACATGTACCATTTTGAGC-AGAGCATTTGGCTTT---TAAGTGATTAGTTGAGTTTTGCTCCA-GCC-TCTATACAT-TTTAATCTGCTGG-TAACTCTGATGTC-TGTCCTATCAGTAAATTCAAG--CACATTTGAAGAATTTCTCATCATTGTGC---------------------ATTTTTTGTTTGTGTTTTTTTCAATA--------------------------CTTGTTGGAA------------------------------------------CTTGTTT----CAAGTCC-----------TGAGTTGGCCCATGCAGCTTTGGG-GGAGAGAGAAAGATCATTATA-----------------------------------------------------CTTTGATAACCCTCACTTTGAAGTTAACCTGCCTTATCTATTTCCTACT
i canFam3.chr3              C 0 I 234
s dasNov3.JH562051             419840 474 +    563711 ----TA-----TGTATTTATTCATTGAT-TTTGGTTTCTGTATATACAGAGTCATTTTTTACAGGTCAGAACTGTAGAAATAATGAGGAAGTGACACTTATACGCAAAGCTGATTTGGAGAACCACAATAAAGATGGAGGCTTCTGGACAGTGATTGATGGGAAAGTGTATGATATAAAGGACTTTCAGACGCAGTCTTTAACAGGGAATAGCATTCTTGGTAAGT---CTCAGTG-TTTGACCTCAGGGTTAAAAGTTGCATTGTGAGTCATTTTAAGC-AGAACATCTGGCTTA---TAAATGGTTCCTTTATCACTACTCCATTCC-CCTGCACAT-TTTGATGTAGGTT-TGACTTTGG-GTC-TGTCTTGTCAACTCATTTA-G-CCACACTTGAAGAATTTCTAGTCATTATGC---------------------AT-TTTTG----------TT---------------------------------------GAG------------------------------------------CCC--------TTAGTTT-----------TGAGTTGCTCTTAGCAA----GAG-AG------------------------------------------------------------------------C--------CCCTCAC-TCTGAGTT-----ATCTAGTTTATTTCCCTCT
i dasNov3.JH562051          C 0 C 0

a score=3451401.000000
s hg38.chr15_KI270851v1_alt    182141 194 +    263054 CACT--------------------------------------ATTTCT--CCTGTAGCTCTTCAGGCAAGCTGAATTGAACTCATGTTGCT----------TTT-TCCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAAGACACCCGGGAATCCATGCACGCATTTTGTGTTGGCCAGTATTTGGAGGTGAGGCTGTA----TGCCTTGAG
s panTro5.chr15              73794985 194 -  83230942 CACT--------------------------------------GTTTCT--CCTATATCTCTTCAGGCAAGCTGAATTGAACTCATGTTGCT----------TTT-TCCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAAGACACCCGGGAATCCATGCACGCGTTTTGTGTTGGCCAGTATTTGGAGGTGAGGCTGTA----TGCCTTGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74098508 194 -  99763055 CACT--------------------------------------GTTTCT--CCTATATCTCTTCAGGCAAGCTGAATTGAACTCATGTTGCT----------TTT-TCCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAAGACACCCGGGAATCCATGCACGCGTTTTGTGTTGGCCAGTATTTGGAGGTGAGGCTGTA----TGCCTTGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       147373 194 -    281578 CACT--------------------------------------GTTTCT--CCTATATCTCTTCAGGCAAGCTGAATTGAACTCATGTTGCT----------TTT-TCCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAAGACACCCGGGAATCCATGCACGCGTTTTGTGTTGGCCAGTATTTGGAGGTGAGGCTGTA----TGCCTTGAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71006242 194 + 121039945 CACT--------------------------------------GTTTCT--CCTATAGCTCTTCAGGCAAGCTGAATTGAACTCATGTTGCT----------TTT-TCCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAAGACACCCGGGAATCCATGCACGCATTTTGTGTTGGCCAATATTTGGAGGTGAGGCTGTA----TGGCTTGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164316103 194 - 169600520 CACT--------------------------------------GTTTCT--CCTATAGCTCTTCAGGCAAATTGAACTGAACTCATGTTGCT----------TTT-TCCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAAGACACGCGGGAATCCATGCACGCGTTTTGTGTTGGCCAGTATCTGGAGGTGAGGCTATA----TGCCTTGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165637068 194 - 171882078 CACT--------------------------------------GTTTCT--CCTATAGCTCTTCAGGCAAATTGAACTGAACTCATGTTGCT----------TTT-TCCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAAGACACGCGGGAATCCATGCACGCGTTTTGTGTTGGCCAGTATCTGGAGGTGAGGCTATA----TGCCTTGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       491513 194 +   2379783 CACT--------------------------------------GTTTCT--CCTATAGCTCTTCAGGCAAATTGAACTGAACTCATGTTGCT----------TTT-TCCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAAGACACGCGGGAATCCATGCACGCGTTTTGTGTTGGCCAGTATCTGGAGGTGAGGCTATA----TGCCTTGAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       448580 194 +   4116138 CACT--------------------------------------GTGTCT--CCTATAGCTCTTCAGGCAAATTGAACTGAACTCATGTTGCT----------TTT-TCCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAAGACACTCGGGAATCCATGCATGCGTTTTGTGTTGGCCAGTATCTGGAGGTGAGGCTATA----TGCCTTGAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53880593 194 +  58131712 CACT--------------------------------------GTTTCT--CCTGTAGCTCTTCAGGCAAATTGAACTGAACTCATGTTGCT----------TTT-TCCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAAGACACTCGGGAATCCATGCACGCGTTTTGTGTTGGCCAATATCTGGAGGTGAGGCTATA----TGCCTTGAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       501410 194 -   3636681 CACT--------------------------------------GTTTCT--CCTATAGCTTTTCAGGCAAATTGAACTGAACTCATGTTGCT----------TTT-TCCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAAGACACTCGGGAATCTATGCATGCGTTTTGTGTTGGCCAGTATCTGGAGGTGAGGCTATG----TGCCTTGAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       480200 194 -   4457520 CACT--------------------------------------GTTGCT--CCTATAGCTCTTCAGGCAAATTGAATTGAACTCATGTTGCT----------TTT-TCCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAAGACACTCGGGAATCCATGCACGCGTTTTGTGTTGGCCAATATCTGGAGGTGAGGCTATA----TGCCTTGAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154513883 194 - 158406734 CACT--------------------------------------GTTTCT--ACTAAAGCTCTTTAGATAAATTGAGTTGAACTCATGCTGCT----------TTT-TTCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAAGACACCCGGGAATCCATGCATGCATTTTGTGTCGGCCAGTATTTGGAGGTGAGGCCTTG----TGCCTTGAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             344753 194 -   2682657 CCCT--------------------------------------GTTTCT--ACTAAAGCTCTTTAGGTAAATTGAATCGAACTCACGTTGTT----------TTT-TTCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAAGACACCCGGGAATCCATGCATGCGTTTTGTGTTGGCCAGTATTTGGAGGTGAGGCTGTA----TGCCTTGAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       368981 194 -   2086007 CACT--------------------------------------GTTTCT--ACTAAAGCTCTTTAGGTAAATTAAATTGAACTCATGTTGCT----------TTT-TTCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAAGACACCCGGGAATCCATGCATGCATTTTGTGTCGGCCAGTATTTGGAGGTAAGGCTGTA----TGCCTTGAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       432397 194 +   3831555 TACT--------------------------------------GTTTCT--ACTAAAGCTCTTTAGGTAAATTGAATTGAACTCATGTTACT----------TTT-TTCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAAGACACCCGGGAATCCATGCATGCGTTTTGTGTCGGCCAGTATTTGGAGGTGAGGCTGTA----TGCCTTGAA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116271792 194 + 116334831 CACC--------------------------------------ATTTCT--GTTATGGCTATCTAGGCAAATTGTACAGAAGTCATGTTGCT----------TTT-TCCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTACAGTTTGAAGACACGCGGGATTCAATGCATGCATTTTGTGTTGGACAGTATTTGGAGGTGAGACTGTG----TGCCCTGAG
i micMur3.chr9              C 0 I 101
s proCoq1.NW_012148396v1     13503130 194 +  16154928 CACC--------------------------------------ATTTCT--GCTATGGCTTTCTAGGCAAATTGTATAGAAGTCATGTTGCT----------TTT-TCCCTTTTTGTTTCAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAAGACACACGGGATTCAATGCATGCATTTTGTGTTGGACAGTATTTGGAGGTGAGGCTGTG----TGCTCTGAG
i proCoq1.NW_012148396v1    C 0 I 27
s otoGar3.GL873689             457116 194 +   3845361 TGCT--------------------------------------GTTTCT--ACTGTGGCTGTCTAGGCAAATCGTATTGAAGTCACGTTGCT----------TTT-TTCATTTTTATTTTAGCTCAATTTGCAGGGGAAGATCCAGTAGTAGCTTTGGAAGCTGCTTTGCAATTTGAAGACACACGAGATTCAATGCATGCGTTTTGTGTTGGCCAGTATTTGGAGGTGAGGCTATG----TCCCCTGAG
i otoGar3.GL873689          C 0 I 1
s mm10.chr7                  56131730 196 + 145441459 TTCT--------------------------------------GTCTATGAACTAGAGCTGT----GCAAGCTGCACTGAACTCATACTGCT----------CTT-CCCCTTTTTGTTTTAGCTCAGTTTGCAGGGGAAGATCCAGTGGTCGCTCTGGAGGCAGCTTTGCAGTTTGAAGACACACAGGAATCCATGCATGCCTTCTGTGTTGGCCAGTATTTGGAGGTGAGGCTGTGGGCCTGCTTTGTG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60032825 233 -  91889043 cacttaactgactgagcctcccaggagccccTCCTACTAGACATTTCT--AATGCAGGTATCTGGGCAAATAGCATTGAAGTAATACTGCT----------TTTGTTCTTTTTTGCTTTAGCTCAGTTTGCAGGGGAAGACCCAGTGGTAGCTTTGGAAGCTGCTTTGCAGTTTGAGGACACTCGGGAGTCGATGCATGCCTTCTGTGTTGGCCAGTATCTGGAGGTGAGGCTGTG----TGCAGTAGG
i canFam3.chr3              I 234 I 1
s dasNov3.JH562051             420314 196 +    563711 -AGC--------------------------------------GTTCCT--ACTATTGCTGTCTAGGCAAATGGTGTCCAAGCCACATTACTTAGTAAGGGCTTT-TTTCTTTTTGTTTCAGCTCAGTTTGCAGGAGAAGATCCTGTCGTTGCTTTGGAAGCAGCTTTGCAGTTTGAAGACACCCGGGAGTCGATGCATGCGTTTTGTGTTGGCCAGTATTTGGAGGTGAGGCTGTG----TG-------
i dasNov3.JH562051          C 0 C 0

a score=18698.000000
s hg38.chr15_KI270851v1_alt    182335 2 +    263054 TG
s panTro5.chr15              73795179 2 -  83230942 TG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74098702 2 -  99763055 TG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       147567 2 -    281578 TG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71006436 2 + 121039945 TG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164316297 2 - 169600520 TG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165637262 2 - 171882078 TG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       491707 2 +   2379783 TG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       448774 2 +   4116138 TG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53880787 2 +  58131712 TG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       501604 2 -   3636681 TG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       480394 2 -   4457520 TG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514077 2 - 158406734 TG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             344947 2 -   2682657 TG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       369175 2 -   2086007 TG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       432591 2 +   3831555 TG
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56131926 2 + 145441459 TG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60033059 1 -  91889043 C-
i canFam3.chr3              I 1 C 0
s dasNov3.JH562051             420510 2 +    563711 TA
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116271986 101 + 116334831 I
e proCoq1.NW_012148396v1     13503324 27 +  16154928 I
e otoGar3.GL873689             457310 1 +   3845361 I

a score=213812.000000
s hg38.chr15_KI270851v1_alt    182337 25 +    263054 --ATGCAGAGGATGGCAGGGGATA------CCC
s panTro5.chr15              73795181 25 -  83230942 --ATGCAGAGGATGGCAGGGGATA------CCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74098704 25 -  99763055 --ATGCAGAGGATGGCAGGGGATA------CCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       147569 25 -    281578 --ATGCAGAGGATGGCAGGGGATA------CCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71006438 25 + 121039945 --ATGCAGAGGATGGCAGAGGATA------CCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164316299 25 - 169600520 --ATGCCGAGGATAGCAAGGGAGA------CCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165637264 25 - 171882078 --ACGCCGAGGATAGCAAGGGAGA------CCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       491709 25 +   2379783 --ACGCCGAGGATAGCAAGGGGGA------CCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       448776 25 +   4116138 --ACGCAGAGGATAGCAAGGGATA------CCC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53880789 25 +  58131712 --ACGCAGAGGATAGCAAGGGATG------CCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       501606 25 -   3636681 --ATGCAGAGGATAGCAAGGGATA------CCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       480396 25 -   4457520 --ACGCAGAGGATAGCAGGGGATA------CCC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514079 25 - 158406734 --TCACACAGGATGTCAGGGGATA------CCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             344949 25 -   2682657 --CCACACGGGATGTCAGGGGATA------CCC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       369177 25 -   2086007 --TCACACAGGATGTCAGGGGATA------CCC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       432593 25 +   3831555 --TCACACAGGATGTCAGGGGATG------CCC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             457311 23 +   3845361 --ACAC-GAGGACATT-GGGGAGA------CCC
i otoGar3.GL873689          I 1 I 2
s mm10.chr7                  56131928 17 + 145441459 ---------AAATAG-AGGAGGTG------CCC
i mm10.chr7                 C 0 I 2
s canFam3.chr3               60033060 31 -  91889043 --TCATCATGGATGTCAGGGGAGAGAGATCCTC
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             420512 26 +    563711 GGGCACAG-GAACGTCAAGGGGTA------CCT
i dasNov3.JH562051          C 0 I 6
e micMur3.chr9              116271986 101 + 116334831 I
e proCoq1.NW_012148396v1     13503324 27 +  16154928 I

a score=769352.000000
s hg38.chr15_KI270851v1_alt    182362 72 +    263054 TCTGTGT-GTTTGTGATAGGAATA-TTTGGATCTAGAAGTACTGAT-ATCTGGGTCTTTT---GCGGGG-----------CATTAGGGA
s panTro5.chr15              73795206 72 -  83230942 TCTGTGT-GTTTGTGATAGGAATA-TTTGGATCTAGAAGTACTGAC-ATCTGGGTCTTTT---GTGGGG-----------CATTAGGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74098729 72 -  99763055 TCTGTGT-GTTTGTGATAGGAATA-TTTGGATCTAGAAGTACTGAC-ATCTGGGTCTTTT---GTGGGG-----------CATTAGGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       147594 72 -    281578 TCTGTGT-GTTTGTGATAGGAATA-TTTGGATCTAGAAGTACTGAT-ATCTGGGTCTTTT---GTGGGG-----------CATTAGGGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71006463 73 + 121039945 TCTGTGT-GTTTGTGATAGGAATA-TTTGGATCTAGAAGTACTGATAATCTGGGTCTTTT---GGGGGG-----------CATTAGGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164316324 73 - 169600520 TCTGTGTGGTTTGTGACAGGAATA-TTTGGATCCAGAAGTACTGAT-ATCTGTGTCTTTT---GGGGGG-----------CATTAGGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165637289 73 - 171882078 TCTGTGTGGTTTGTGACAGGAATA-TTTGGATCCAGAAGTACTGAT-ATCTGTGTCTTTT---GGGGGG-----------CATTAGGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       491734 73 +   2379783 TCTGTGTGGTTTGTGACGGGAATA-TTTGGATCCAGAAGTACTGAT-ATCTGTGTCTTTT---GGGGGG-----------CATTAGGGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       448801 73 +   4116138 TCTGTGTGGTTTGTGACAGGAATA-TTTGGATCCAGAAGTACTGAT-ATCTGTGTCTTTT---GGGGGG-----------CATTAGGGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53880814 73 +  58131712 TCTGTGTGGTTTGTGACAGGAATA-TTTGGATCCAGAAGTACTGGT-ATCTGTGTCTTTT---GGGGGG-----------CATTAGGGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       501631 73 -   3636681 TCTGTGTGGTTTGTGACAGGAATA-TTTGGATCCAGAAGTACTGAT-ATCTGTGTCTTTT---GGGGGG-----------CATTAGGGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       480421 72 -   4457520 TCTGTGT-GTTTGGGACAAGAATA-TTTGGATTCAGAAGTACTGAT-ATCTGTGTCTTTT---GAGGGG-----------CATTAGGGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514104 74 - 158406734 TGTGTGT-GTTTGTGACAGGAATA-TTTGCATCCAGAAGTACTGAC-AGCGGGGTCTTTTGA-GGGGGG-----------CATTAGGGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             344974 74 -   2682657 TGTGTGT-ATTTGGCGTAGGAATA-TTTGGATCCGGAAGTACTGAT-AGCGGGGTCTTTTGA-GGGGGG-----------CGTTAGGGA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       369202 74 -   2086007 TGTGTGT-GTTTGTGATAGGAATA-TTTGGATCCAGAAGCACTGAC-AGCGGGGTCTTTTGA-GGGGGG-----------CATCAGGGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       432618 74 +   3831555 TGTGTGT-GTTTGTGATAGGAATA-TTTGGATCCAGAAGTACTGAC-AGCGGAGTCTTTTGA-GGGGGG-----------CATTAGGGA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13503351 72 +  16154928 TCTGTAT-GCTTGTGATAGGGTGA-TTTTGACCCTAAAGTACTGAT-ATTTGGGACCTTT---GTGGGG-----------CATTTAGCG
i proCoq1.NW_012148396v1    I 27 I 1
s otoGar3.GL873689             457336 65 +   3845361 CAAGTGT-GTTTGTGATAGGATGG-TTTTGACCTTAAAGTCCTGAT--------ACCTTT---GTGGGG-----------TATTAAGTG
i otoGar3.GL873689          I 2 I 1
s mm10.chr7                  56131947 61 + 145441459 CTTAAGT-GCCTGTTATGGTATGACTTTTTACTTAGTTATACTAAT-A---------------GTTGGA-----------CATAAAATA
i mm10.chr7                 I 2 C 0
s canFam3.chr3               60033091 83 -  91889043 TCCGTAT-ATCTGTGATAGGTGGT-TTTTG-CCCTGAAGTACTGAT-AGCTGGGCCTTTTGATGTGGGGGATGGATG--TCATTAAGTG
i canFam3.chr3              C 0 I 9
s dasNov3.JH562051             420544 74 +    563711 TCTGCAT-GTTGGTGATGGATGAG-TTTTG-CCCTCAATTACTGAT-A------TTTTAT---GGGGGG--TGGGTGGCTTGTAAGTGA
i dasNov3.JH562051          I 6 C 0
e micMur3.chr9              116271986 101 + 116334831 I

a score=2196074.000000
s hg38.chr15_KI270851v1_alt    182434 160 +    263054 TAAATATAAAGATCCTTTAGAAG-TTTTGTCATAAATGAATTTACATTTATTCATGTTAAGATCTGTGATGTACTGGTCT--TGAAAGATTG-TTTTTTAAATGATCAATTTGTGAGAAATATAGGCAGTGTTCCACA---------AGAAAAGAGGTTAAACTTTGGT--------------------CTTA
s panTro5.chr15              73795278 160 -  83230942 TAAATATAAAGATCCTTTAGAAG-TTTTGTCATAAATGAATTTACATTTATTCACGTTAAGATCTGTGATGTACTGGTCT--TGAAAAATTG-TTTTTTAAATGATCAATTTGTGAGAAATAGAGACAGTGTTCCACA---------AGAAAAGAGGTTAAACTTTGGT--------------------CTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74098801 160 -  99763055 TAAATATAAAGATCCTTTAGAAG-TTTTGTCATAAATGAATTTACATTTATTCACGTTAAGATCTGTGATGTACTGGTCT--TGAAAAATTG-TTTTTTAAATGATCAATTTGTGAGAAATATAGGCAGTGTTCCACA---------AGAAAAGAGGTTAAACTTTGGT--------------------CTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       147666 160 -    281578 TAAATATAAAGATCCTTTAGAAG-TTTTGTCATAAATGAATTTACATTTATTCATGTTAAGATCTGTGATGTACTGGTCT--TGAAAAATTG-TTTTTTAAATGATCAATTTGTGAGAAATATAGACAGTGTTCCACA---------AGAAAAGAGGTTAAACTTTGGT--------------------CTTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71006536 160 + 121039945 TAAATTTAAAGATCCTTTAGAAG-TTTTGTCATAAATGAATTTACATTTATTCATGTTAAGATCTGTGATGTACTGGTCT--TGAAAGATTG-TTTTTTAAATGATCAATTTGTGAGAAATATAGACAGTGTTCTACA---------AGAAAAGAGGTTAAACTTTGGT--------------------CTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164316397 158 - 169600520 TAAATATAAAGATCCTTTAGAAG-TTTTGTCATAAATGAATTTACATTTATTCATGTTAAGATCTGTGATGTATTGGTCT--TGAAAGATTG-TTTTTTAAATGATCAATT--TGAGAAATATAGACAGTGTTCCACA---------AGAAAAGAGGTTAAACTTTGGT--------------------CTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165637362 158 - 171882078 TAAATATAAAGATCCTTTAGAAG-TTTTGTCATAAATGAATTTACATTTATTCATGTTAAGATCTGTGATGTATTGGTCT--TGAAAGATTG-TTTTTTAAATGATCAATT--TGAGAAATATAGACAGTGTTCCACA---------AGAAAAGAGGTTAAACTTTGGT--------------------CTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       491807 158 +   2379783 TAAATATAAAGATACTTTAGAAG-TTTTGTCATAAATGAATTTACATTTATTCATGTTAAGATCTGTGATGTATTGGTCT--TGAAAGATTG-TTTTTTAAATGATCAATT--TGAGAAATATAGACAGTGTTCCACA---------AGAAAAGAGGTTAAACTTTGGT--------------------CTTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       448874 158 +   4116138 TAAATATAAAGATCCTTTAGAAG-TTTTGTCATAAATGAATTTACATTTATTCATGTTAAGATCTGTGATGTATTGGTCT--TGAAAGATTG-TTTTTTAAATAATCAATT--TGAGAAATATAGACAGTGTTCCACA---------AGAAAAGAGGTTAAACTTTGGT--------------------CTTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53880887 158 +  58131712 TAAATATAAAGATCCTTTAGAAG-TTTTGTCATAAATGAATTTACATTTATTCATGTTAAGATCTGTGATGTATTGGTCT--TGAAAGATTG-TTTTTTAAATAATCAATT--TGAGAAATATAGACAGTGTACCACA---------AGAAAAGAGGTTAAACTTTGGT--------------------CTCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       501704 158 -   3636681 TAAATATAAAGATCCTTTAGAAG-TTTTGTCATAAATGAATTTACATTTATTCATGTTAAGATCTGTGATGTATTGGTCT--TGAAAGATTG-TTTTTTAAATAATCAATT--TGAGAAATATAGACAGTGTTCCACA---------AGAAAAGAGGTTAAACTTTGGT--------------------CTTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       480493 158 -   4457520 TAAATATAAAGATCCTTTAGAAG-TTTTGTTATAAATGAATTTACATTTATTCATGTTAAGATCTGTGATGTATTGGTCT--TGAAAGATTG-TTTTATAAATGATCAATT--TGAGAAATATAGACAGTGTTCCACA---------AGAAAAGAGGTTAAACTTTGGT--------------------CTTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514178 165 - 158406734 TAAATAGAAGGATCCTTTAGAAG-TTTTTTCATAAGTGAATTTACATTTATTCATGTTAAGATTTAGGATGTGCTGGTCT--TGAAAGACTA-TTTTTTAAATGACTAGTTTGTGAGAAATGTAAATAGTGTTCCACA---------AGAAAAGAGGTTAAACTTTTGTTCTGA---------------CTTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             345048 164 -   2682657 TAAATAGAAGGATCCTTTAGAAG-TTTTTTCATAAATGAATTTAGATTTATTCATGGTAAGGTTTTTGATGTGCTGGTCT--TGAAAGAGTG-TTTTTTAAATGACCAATTTGTGAGAAA-ATAGACAGTGTTCCACA---------GGAAAAGAGGTTAAACCTTTGTCTTGA---------------CTTA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       369276 161 -   2086007 TAAATAGAAGGATCTTTTAGAAGTTTTTTTCATAAATGAATTTACATTTATTCATGTTAAGATTTTTGATGTGCTGGTCT--TGAAAGATTG-TTTTTTAAATGACCAATTTGTGAGAAATATAGACAGTGTTCCACA---------AGAAAAGAGGTTAAACTTTTGT--------------------CTTA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       432692 166 +   3831555 TAAATAGAAGGATCCTTTAGAAGTTTTTTTCATAAATGAATTTACATTTATTCATGTTAAGATTTTTGATGTGCTGGTCT--TGAAAGACTGTTTTTTTAAATGAC-AATTTGTGAGAAATATAGACAATGTTCCATG---------AGAAAAGACGTTAAACTTTTGTCTTGA---------------CTTA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116272087 176 + 116334831 TAAACATAAAGATCCTTTAGAAG-TTGTTTCCTAAATGAATTTACATTTATTCTT---AAGACTGATGATATGCTGGTCT--TAAAAAATTA-TTTTAAAAATTATGAATTTGTAAGAAATATAGATAC--TTCCACA--------TAAAAAAGAGGTTAAACTTTGATCTTTACAATTTTCTTGTAAGCTAA
i micMur3.chr9              I 101 C 0
s proCoq1.NW_012148396v1     13503424 176 +  16154928 TAAAAATAAAAATCCTTTAGAAG-TTGTTTCATAAGTGAATTTACATTTATTCTT---AAGACTTATGATGTGCTGGTCT--TAAAAAATTA-TTTTAAAAATTATTAATTTATAAGAAATATAGACAC--TTCCACA--------CAAAAAAGATGTTAAACTTTGGTTTTTACAATTTTCTTATAAGCTTA
i proCoq1.NW_012148396v1    I 1 C 0
s otoGar3.GL873689             457402 175 +   3845361 AAAACATAAAGATCCTTTAGAAA-TTACTTCATAAATGACTTTACATTTATTCTTGTCAAGATTTATGATGTGCTGGTCT--TGAAAAATTA-TTTTAGAAATT----ATTTGTAAGAAATAAAGACAT--TTTCACA--------TAGAAAAGAGGTTAAACTTCAGTCTTTACAATTTTTTTGTAAGCTTA
i otoGar3.GL873689          I 1 C 0
s mm10.chr7                  56132008 148 + 145441459 -----TTTATGTTGGCTTAGGA--TTTTTTGACAAATAAATTTGCATTT-TATGTGTTAAGGTTTATTATATACAAGT-T--TGAAGAGTTA-------------ACAACATGCCAGAAATAGAGA-AATGTTCAAAAAAAAAGAAAAGAAAAGACATTAAAGTTTGTC--------------------CTTA
i mm10.chr7                 C 0 I 94
s canFam3.chr3               60033183 182 -  91889043 AACATATGAAGAT-CTTTAGAGA-TTTCTTTGTAAATGAATTTACATTTTTTCATGTTAAGATTTACGAAGTATTGGTCT--TGAAAAACCA-TTTCAAAAATTGTTAATTTGTTGTAAAGGTGGACACTTTTCCACA------CATAAAAAAGAAGGTAACCTTTGGTCTTTACAATTTCATTGTAAACTTA
i canFam3.chr3              I 9 C 0
s dasNov3.JH562051             420618 179 +    563711 TAAGCATAAAGATAATTTATAA--TTTTTTCATAAGTGAACATAAAATCATTCATGTTAAGAGTCATGTTA-ACTATTATGATGAAAAACTA--TTTAGAAATTGTTAATTTATAAGAAATATAGGTAATGTTTCACA---------CACAAAAAGGTTAACCTTTGGTTTTTACAATTTTGTTGTAAGCGTA
i dasNov3.JH562051          C 0 C 0

a score=828093.000000
s hg38.chr15_KI270851v1_alt    182594 59 +    263054 TGTAGAAATTTGGAATGGCTTATAATCTTGAGGTA----------TGTATTTTTTGGG----AAGAACTATGT
s panTro5.chr15              73795438 58 -  83230942 TGTAGAAATTTGGAATGGCTTATAATCTTGAGGTA-----------GTATTTTTTGGG----AAGAACTATGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74098961 58 -  99763055 TGTAGAAATTTGGAATGGCTTATAATCTTGAGGTA-----------GTATTTTTTGGG----AAGAACTATGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       147826 59 -    281578 TGTAGAAATTTGGAATGGCTTATAATCTTGAGGTA----------TGTATTTTTTGGG----AAGAACTATGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71006696 59 + 121039945 TGTAGAAATTTGGAATGGCTTATTATCTTGAGGTA----------TGTATTTTTTGGG----AAGAACTATGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164316555 59 - 169600520 TGTAGAAATTTGGAATGGCTTATTATCTTGCGGTA----------TGTATATTTTGGG----AAGAACTATGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165637520 59 - 171882078 TGTAGAAATTTGGAATGGCTTATTATCTTGCGGTA----------TGTATATTTTGGG----AAGAACTATGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       491965 59 +   2379783 TGTAGAAATTTGGAATGGCTTATTATCTTGCGGTA----------TGTATATTTTGGG----AAGAACTATGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449032 59 +   4116138 TGTAGAAATTTGGAATGGCTTATTATCTTGCGGTA----------TGTATATTTTGGG----AAGAACTATGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881045 59 +  58131712 TGTAGAAATTTGGAATGGCTTATTATCTTGCGATA----------TGTATATTTTGGG----AAGAACTATGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       501862 59 -   3636681 TGTAGAAATTTGGAATGGCTTATTATCTTGCGGTA----------TGTATATTTTGGG----AAGAACTATGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       480651 59 -   4457520 TGTAGAAATTTGGAATGGCTTATCATCTTGCGGTA----------TGTATATTTGGGG----AAGAACTATGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514343 59 - 158406734 TGTAGAAATTTGGAATGGCTTATTGTCTTGAGGTA----------TGTACTTTTTGGG----AAGAAATATGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             345212 59 -   2682657 TGAAGAAATTTGGAATGGCTTATTATCTTGAGGTA----------TGTATTTTTTGGG----AAGAAATATGC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       369437 59 -   2086007 TGTAGGAATTTGGAATGGCTTATTATCTTGAGGTA----------TGTATTTTTTGGG----AAGAAATATGC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       432858 59 +   3831555 TGTAGAAATTTGGAATGGCTTATTATCTTGAGGTA----------TATATTTTTTGGG----AAGAAATATGC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116272263 58 + 116334831 TGTAGAAGTTTGGAATGGCTTACTATCTTGAGGTA----------TAT-TTTTTTGGG----AAGAACTATAA
i micMur3.chr9              C 0 I 15759
s proCoq1.NW_012148396v1     13503600 58 +  16154928 TGTAGAAATTTGGAATGGCTTACTATCTTGAGGTA----------TAT-TTTTTTGGG----AACAATTATAT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             457577 62 +   3845361 TTTAGAAATTTGGAATGGCTTACTATATTGATGTA----------TTT-TGGGGTGGGGGGAAAGAATTGTAT
i otoGar3.GL873689          C 0 I 289
s canFam3.chr3               60033365 56 -  91889043 TGTAGAAATTTGAAATGCCTTATTATCTTG-GTTA----------GGT--TTTTTGGG----AAGAGCTATCT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             420797 68 +    563711 TATAGACATTTGTGATGGCTTACCATCCTGAATAAAAAAAGCTTTTGTAT-TTCTGTG----AAGAGCTATAT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132156 94 + 145441459 I

a score=606829.000000
s hg38.chr15_KI270851v1_alt    182653 38 +    263054 AGAAGTGTAATTCTTTACAATAGAAAT-ATGTCCTTCCT
s panTro5.chr15              73795496 38 -  83230942 AGAAGTGTAATTCTTTACAGTAGAAAT-ATGTCCTTCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099019 38 -  99763055 AGAAGTGTAATTCTTTACAGTAGAAAT-ATGTCCTTCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       147885 38 -    281578 AGAAGTGTAATTCTTTACAGTAGAAAT-ATGTCCTTCCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71006755 38 + 121039945 AGAAGTGTAATTCTTTACAATAGAAAT-ATATCCTTCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164316614 38 - 169600520 AGAAGTGTAATTCTTGGCAATAGAAAT-ATGTCCTTCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165637579 38 - 171882078 AGAAGTGTAATTCTTGGCAATAGAAAT-ATGTCCTTCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492024 38 +   2379783 AGAAGTGTAATTCTTGGCAATAGAAAT-ATGTCCTTCCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449091 38 +   4116138 AGAAGTGTAATTCTTGGCAATAGAAAT-ATGTCCTTCCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881104 39 +  58131712 AGAAGTGTAATTCTTGGCAATAGAAATAATGTCCTTCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       501921 38 -   3636681 AGAAGTGTAATTCTTGGCAATAGAAAT-ATGTCCTTCCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       480710 38 -   4457520 AGAAGTGTAATTCTTTGCAATAGAAAT-ATGTCCTTCCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514402 38 - 158406734 AGAAGTGTAATCCTTTAGAATAGAAAT-ATGTCCTTCCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             345271 38 -   2682657 AGAAGTGTAATCCTTTAGAGTAGAAAT-ATGTCCTTCCT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       369496 38 -   2086007 AGAAGTGTAATCCTTTAGAATAGAAAT-ATGTCCTTCCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       432917 38 +   3831555 AGAAGTGTAATCCTTTAGAATAGAAAT-ATATCCTTCCT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116288080 38 + 116334831 AGAAGTGTAATTCTTTACAATAGAAAT-ATATCCTTCCT
i micMur3.chr9              I 15759 I 273
s proCoq1.NW_012148396v1     13503658 38 +  16154928 AGAAGTGTAATTCTTTACAGTAGAAAT-ATGTCCTTCCT
i proCoq1.NW_012148396v1    C 0 I 198
s otoGar3.GL873689             457928 38 +   3845361 AGAAATGTAATTCTTTACAATAGAAAT-ATGTCCTTCCG
i otoGar3.GL873689          I 289 C 0
s canFam3.chr3               60033421 38 -  91889043 AGTAGCATAACTCTTTAGAATAGAAGT-ATGTCCTACAT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             420865 38 +    563711 AACACCATAGTTCTTTAGAATAGGAAT-ATGTCCTTTAT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132156 94 + 145441459 I

a score=1867178.000000
s hg38.chr15_KI270851v1_alt    182691 167 +    263054 ATGTATTCACGAACACATAGAATT------TATATATTGGGATTAGCTTACTAGGTA--------TCGACAAGTAATAAGATGTATTAAATGCCATTAGGGCAGG---GCTTAAAACAGTTTATGAAGGGGAGAATTAACTTTG--C-TGTAAAT----ATCTT-CTGTGACTGAAAA-----------AG-----------------TTGAACTCTTGC
s panTro5.chr15              73795534 167 -  83230942 ATGTATTCACGAACACATAGAATT------TATATATTGGGATTAGCTTACTAGGTA--------TCGACAAGTAATAAGATGTATTAAATGCCATTAGGGCAGG---GCTTAAAACAGTTTATGAAGGGGAGAATTAACTTTG--C-TGTAAAT----ATCTT-CTGTGACTGGAAA-----------AG-----------------TTGAACTCTTAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099057 167 -  99763055 ATGTATTCACGAACACATAGAATT------TATATATTGGGATTAGCTTTCCAGGTA--------TCGACAAGTAATAAGATGTATTAAATGCCATTAGGGCAGG---GCTTAAAACATTTTATGAAGGGGAGAATTAACTTTG--C-TGTAAAT----ATCTT-CTGTGACTGGAAA-----------AG-----------------TTGAACTCTTAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       147923 167 -    281578 ATGTATTCATGAACACATAGAATT------TATATATTGGGATTAGCTTTCCAGGTA--------TCGACAAGTAATAAGATGTATTAAATGCCATTAGGGCAGG---GTTTAAAACAGTTTATGAAGGGGAGAATTACCTTTG--C-TGTAAAT----ATCTT-ATGTGACTGGAAA-----------AG-----------------TTGAACTCTTGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71006793 167 + 121039945 ATGTATTCATGAACGCATAGAATT------TATATATTGGGATTAGCTTTCCAGGTA--------TCCACAAGTAATAAAATGTATTAAATGCCATTAGGGCAGG---GCTTAAAGCATTTTATGAAGGGGAGAATTAATTTTG--C-TGTAAAT----ATCTT-CTGTGACTGGAAA-----------AG-----------------TTGAACTCTTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164316652 173 - 169600520 ATGTATTCACGAACACATAGAATTTATATATATATATTGGGATTAGCTTTCCAGATA--------TCCATAAGTAATAAAATGTATTAAATGCCATTAGGGCAGG---GCTTAAAGCATTTTATGAAGGGGAGAATTAACTTTG--C-TGTAAAT----ATCTT-CTGTGACTGGAAA-----------AG-----------------TTGAACTCTTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165637617 173 - 171882078 ATATATTCACGAACACATAGAATTTATATATATATATAGGGATTAGCTTTCCAGATA--------TCCATAAGTAATAAAATGTATTAAATGCCATTAGGGCAGG---GCTTAAAGCATTTTATGAAGGGGAGAATTAACTTTG--C-TGTAAAT----ATCTT-CTGTGACTGGAAA-----------AG-----------------TTGAACTCTTGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492062 171 +   2379783 ATGTATTCACGAACACATAGAATT--TATATATATATTGGGATTAGCTTTCCAGATA--------TCCATAAGTAATAAAATGTATTAAATGCCATTAGGGCAGG---GCTTAAAGCATTTTATGAAGGGGAGAATTAACTTTG--C-TGTAAAT----ATCTT-CTGTGACTGGAAA-----------AG-----------------TTGAACTCTTGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449129 167 +   4116138 ATGTATTCATGAACACATAGAATT------TATATATTGGGATTAGCTTTCCAGATA--------TCCATAAGTAATAAAATGTATTAAATGCCATTAGGGCAGG---GCTTAAAGCATTTTATGAAGGGGAGAATTAACTTTG--C-TGTAAAT----ATCTT-CTGTGACTGGAAA-----------AG-----------------TTGAACTCTTGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881143 167 +  58131712 ATGTATTCACGAACACATAGAATT------TATATATTGGGATTAGCTTTCCAGATA--------TCCATAAGTAATAAAATGTATTAAATGCCATTAGGGCAGG---GCTTAAAGCATTTTATGAAGGGGGGAATTAACTTTG--C-TGTAAAT----ATGTT-CTGTGACTGGAAA-----------AG-----------------TTGAACTCTTGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       501959 167 -   3636681 ATGTATTCATGAACACATAGAATT------TATATATTGGGATTAGCTTTCCAGATA--------TCCATAAGTAATAAAATGTATTAAATGCCATTAGGGCAGG---GCTTAAAGCATTTTATGAAGAGGAGAATTAACTTTG--C-TGTAAAT----ATCTT-CTGTGACTGGAAA-----------AG-----------------TTGAACTCTTGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       480748 167 -   4457520 ATGTATTCACGAACACATAGAATT------TATATATTGGGATCAGCTTTCCAGATA--------TCCACAAGTAATAAAATGTATTAAATGCCATTAGGGCAGG---GCTGAAAGCATTTTATGAAGGGGAGAATTAACTTTG--C-TGTAAAT----GTCTT-CTGTGACTGGAAA-----------AG-----------------TTGAACTCTTGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514440 166 - 158406734 GTGTATTCACGAACAAATGGAATT------TATATATTGGGACTAGCTTTCCAGGTA--------TCCACAAGTAATAAAGTGTATTAAGTGGCAGAAGGGCAGG---GCTTAAAGCA-TTTATGGAGGGGAAAAGTAACTTTG--C-TGTAAAT----ATCTT-CTGTGAGTGGAAA-----------AG-----------------TTGAACTCTTGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             345309 170 -   2682657 ATGTATTTACGAACACATGGGATT------TATATATTGGGATTAGCTTTCCAGGTA--------TCCACAAGTAATAAAATGTATTAAATGCCATGAGGGCAGGCTTAATTAAAGCATTTTATGAAGGGGAAAATTAACTTTG--C-TGTAAAT----ACCTT-CTGTGAGTGGAAA-----------AG-----------------TTGAACTCTTGC
i saiBol1.JH378292          C 0 I 3
s cebCap1.NW_016107707v1       369534 167 -   2086007 ATGTATTTACGAACACATGGAATT------TATATATTGGGATTGGCTTTCCAGGTA--------TCCACAAGTAATAAAATGTATTAAATGCCATAAGGGCAGG---CTTTAAAACATTTTATGAGGGGGAAAATTAACTTTG--C-TGTAAAT----ATCTT-CTGTGAGTGGAAA-----------AG-----------------GTGAACTCTTGC
i cebCap1.NW_016107707v1    C 0 I 4
s aotNan1.NW_018503298v1       432955 167 +   3831555 ACGTATTCACGAACACACGGAATT------TATATATTGGGATTAGCTTTCCAGGTA--------TCCACAAGTAATAAAATGTATTAAATGCCATAAGGGCAGG---GCTTAAAGCATTTTATGAAGGGGAAAATTAACTTTG--C-TGTAAAT----ACCTT-CTGTGAGTGGAAA-----------AG-----------------TTGAACTCTTGC
i aotNan1.NW_018503298v1    C 0 I 2
s otoGar3.GL873689             457966 156 +   3845361 ATGTATTCATGAGCAT-TGGAGTT------TATATATTGGGATTGGCCTTCTAAATATTTAAATGTCCAGAAGTAATAAAATTCATTAAGTGCCAT-------------------------------GGGGAAGATTAGCTTTGGTT-TGTAAAT-------TG-GTGTTACTAGAAAACTTTAAGAATAT-----------------TTGAACTCTTAC
i otoGar3.GL873689          C 0 I 3
s canFam3.chr3               60033459 156 -  91889043 ----ATGCTTGAGCTT-TGGAATT------TATATATTGGGATTGGTTTTCCAGGTATGAA----TCCAGAAGTAATAAAATTTATTAAGTGCC--------------ACTTAATGC-TTTCATGAAGGGGAAGA-----------T-TATAAATTATCATCTA-ATACGAATGACAG-----------AGT------TTATTTTCATTTGAACAC----
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             420903 192 +    563711 ACATATTCATGAGT-CTTAGACTT------TATATATTGTGATTGGCTTTCCAGGTTTATATC--TCAGAAGGTAGTATAATTCATTGAATGCTGCAGGAATAGG---GCTTAAGGCATTTTATAAATAGGGAAAATTACTTTG--CTTGTAAAT---TGTCTTAATGGGACTGGAAG-----------AGTTTAAGATTATTTTTATTTGGACTTTAGC
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132156  94 + 145441459 I
e micMur3.chr9              116288118 273 + 116334831 I
e proCoq1.NW_012148396v1     13503696 198 +  16154928 I

a score=292224.000000
s hg38.chr15_KI270851v1_alt    182858 36 +    263054 -------TTTTTTCA--GAGTTTGATTTTTGTTAGAATAAATTTC
s panTro5.chr15              73795701 36 -  83230942 -------TTTTTTCA--GAGTTTGATTTTTGTTAGAATAAATTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099224 36 -  99763055 -------TTTTTTCA--GAGTTTGATTTTTGTTAGAATAAATTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148090 36 -    281578 -------TTTTTTCA--AAGTTTGATTTTTGTTAGAATAAATTTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71006960 36 + 121039945 -------TTTTTTCA--GAGTTTGGTTTTTGTTAGAATAAATTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164316825 36 - 169600520 -------TTTTTTCA--GAGTTCGATTTTTGTTAGAATAAATTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165637790 36 - 171882078 -------TTTTTTCA--GAGTTCGATTTTTGTTAGAATAAATTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492233 36 +   2379783 -------TTTTTTCA--GAGTTCGATTTTTGTTAGAATAAATTTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449296 36 +   4116138 -------TTTTTTCA--CAGTTCGATTTTTGTTAGAATAAATTTC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881310 36 +  58131712 -------TTTTTTCA--GAGTTCGATTTTTGTTAGAATAAATTTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502126 36 -   3636681 -------TTTTTTCA--GAGTTCGATTTTTGTTAGAATAAATTTC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       480915 36 -   4457520 -------TTTTTTCA--GAGTTCGATTTTTGTTAGAATAAATTTC
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             345482 25 -   2682657 -------tttttt-------ttttttttttatGAG------TTTC
i saiBol1.JH378292          I 3 C 0
s cebCap1.NW_016107707v1       369705 35 -   2086007 -------TTTTTTAT--GAGTTTCATTTTTGTTAGAATAA-TTTC
i cebCap1.NW_016107707v1    I 4 C 0
s aotNan1.NW_018503298v1       433124 36 +   3831555 -------TTTTTTAT--GAGTTTCATTTTTGTTAGAATAAGTTTC
i aotNan1.NW_018503298v1    I 2 C 0
s otoGar3.GL873689             458125 33 +   3845361 -------TGTTTGGC--GAGTTTGCTTTTCA--GGAATAAATTT-
i otoGar3.GL873689          I 3 C 0
s canFam3.chr3               60033615 37 -  91889043 -------TTTTCTAATTGGGTTTCCTTTTTGTTAGCATAAATTT-
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             421095 38 +    563711 TTTTTTTTTTTTTAATGGGCTTGGTTTTTTGTGAGAAT-------
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132156 94 + 145441459 I
e micMur3.chr9              116288118 273 + 116334831 I
e proCoq1.NW_012148396v1     13503696 198 +  16154928 I
e calJac3.chr6              154514606  0 - 158406734 C

a score=514415.000000
s hg38.chr15_KI270851v1_alt    182894 52 +    263054 ATTTCCTCTACAT---------------------GTGTGGTCACAGTCCACT---------AAT-----ACTTGTCATCGAATACT-----T
s panTro5.chr15              73795737 52 -  83230942 ATTTCCTCTACAT---------------------GTGTGGTCATAGTCCACT---------AAT-----ACTTGTCATCGAATACT-----T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099260 52 -  99763055 ATTTCCTCTACAT---------------------GTGTGGTCACAGTCCACT---------AAT-----ACTTGTCATCGAATACT-----T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148126 52 -    281578 ATTTCCTCTACAT---------------------GTGTGGTCACAGTCCACT---------AAT-----ACTTGTCATCGAATACT-----T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71006996 52 + 121039945 ATTTCCTCTATAT---------------------GTGTGGTCACAGTCCACT---------AAT-----ACTTGTCATCGAATACT-----T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164316861 57 - 169600520 ATTTCCTCCACAT---------------------GTGTGGTCACAGTCCACT---------AAT-----ACTTGTCATCGAACACTTGTCGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165637826 57 - 171882078 ATTTCCTCCACAT---------------------GTGTGGTCACAGTCCACT---------AAT-----ACTTGTCATCGAACACTTGTCGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492269 57 +   2379783 ATTTCCTCCACAT---------------------GTGTGGTCACAGTCCACT---------AAT-----ACTTGTGATCGAACACTTGTCGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449332 57 +   4116138 ATTTCCTCCACAT---------------------GTGTGGTCACAGTCCACT---------AAT-----ACTTGTCATCGAACACTTGTCGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881346 57 +  58131712 ATTTCCTCCACAT---------------------GTGTGGTCACAGTCCACT---------AAT-----ACTTGTCATCGAACACTTCTCGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502162 57 -   3636681 ATTTCCTCCACAT---------------------GTGTGGTCACAGTCCACT---------AAT-----ACTTGTCATCGAACACTTGTCGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       480951 56 -   4457520 ATTTCCT-CACAT---------------------GTGTGGTCACAGTCCACT---------AAT-----ACTTGTCATTGAATAGTTGTCGT
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             345507 57 -   2682657 ATTTCCTCCATGT---------------------GTGTGGTCACGGTCCACT---------AAT-----AGTTGTGATCAAGTACCTGCCAC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       369740 57 -   2086007 ATTTCCTCCATGT---------------------GTGTGGTCACGGTCCACT---------AAT-----ACTTGTCATCGAGTACCTGCCAT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433160 57 +   3831555 ATTTCCTTCACAT---------------------GTGCGGTTACGGTCCACT---------AAT-----ACTTGTCATCGAGTACCTGCCAT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13503894 52 +  16154928 ATTTTCTCCACAT---------------------GTGTGGTCATGGTTCATT---------AAT-----ACTTGTCAACTAATACTT-----
i proCoq1.NW_012148396v1    I 198 I 366
s otoGar3.GL873689             458158 71 +   3845361 ATTTTTTCCACATGCGTGGAGATGGTTACCACAAGTGTGGTCATGGTTA--T---------CAC-----ACTTTTTAGCTGATGCTT-----
i otoGar3.GL873689          C 0 I 5
s canFam3.chr3               60033652 47 -  91889043 ATTTCCTCTGCAT---------------------ATGTGGTCATAGTTCACTACGCACAGCAAT-----TCTT-------------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             421133 50 +    563711 ATTTCCTTCATAT---------------------CTGTGGTCATGATTCACT---------AATTAGGAATCTGT-----AATAC-------
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132156 94 + 145441459 I
e micMur3.chr9              116288118 273 + 116334831 I
e calJac3.chr6              154514606  0 - 158406734 C

a score=191944.000000
s hg38.chr15_KI270851v1_alt    182946 20 +    263054 GTCATAGTTTTGTTGCCCAG
s panTro5.chr15              73795789 20 -  83230942 GTCATAGTTTTGTTGCCCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099312 20 -  99763055 GTCATAGTTTTGTTGCCCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148178 20 -    281578 GTCATAGTTTTGTTGCCCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007048 20 + 121039945 GTCATAGTTTTGTTGCCCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164316918 20 - 169600520 GTCATAGTTTTGTTGCCCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165637883 20 - 171882078 GTCATAGTTTTGTTGCCCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492326 20 +   2379783 GTCATAGTTTTGTTGCCCAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449389 20 +   4116138 GTCATAGTTTTGTTGCCCAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881403 20 +  58131712 GTCATAGTTTTGTTGCCCAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502219 20 -   3636681 GTCATAGTTTTGTTGCCCAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481007 15 -   4457520 GTCATAGTTTTGTTG-----
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             345564 20 -   2682657 TTCACAGTTCTGTTGCCCAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       369797 20 -   2086007 GTCACAGTTTTGTTGCCCAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433217 20 +   3831555 GTCACAGTTTTGTTGCCCAG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             458234 20 +   3845361 GTCACATTTTTGTCTCTCAT
i otoGar3.GL873689          I 5 C 0
s canFam3.chr3               60033699 20 -  91889043 GTTATATTTTTGGCTTTTGG
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             421183 16 +    563711 GTCATATTTCTTCTTA----
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132156 94 + 145441459 I
e micMur3.chr9              116288118 273 + 116334831 I
e proCoq1.NW_012148396v1     13503946 366 +  16154928 I
e calJac3.chr6              154514606  0 - 158406734 C

a score=411206.000000
s hg38.chr15_KI270851v1_alt    182966 30 +    263054 TGGGTTCTTTATGCATGTAACAATTCATTA
s panTro5.chr15              73795809 30 -  83230942 TGGGTTCTTTATGCATGTAACAATTCATTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099332 30 -  99763055 TGGGTTCTTTATGCATGTAACAATTCATTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148198 30 -    281578 TGGGTTCTTTATGCATGTAACAATTCATTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007068 30 + 121039945 TGGGTTCTTTATGCGTGTAACAATTCATTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164316938 30 - 169600520 TGTGTTACTTATGCATGTAACAATTCATTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165637903 30 - 171882078 TGTCTTCCTTATGCATGTAACAATTCATTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492346 30 +   2379783 TGTGTTCCTTATGCATGTAACAATTCATTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449409 30 +   4116138 TGTGTTCCTTATGCATGTAACAATTCATTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881423 30 +  58131712 TGTGTTCCTTATGCATGTAACAATTCATTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502239 29 -   3636681 TGT-TTCCTTGTGCATGTAACAATTCATTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481022 26 -   4457520 ----TTCTTTATGCATGTAACAATTCATTA
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             345584 30 -   2682657 TGGTTTCCTTATGCATATAACAATTCATTA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       369817 30 -   2086007 TGGGTTCCTTATGCATATAACAATTCATTA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433237 30 +   3831555 TGGGTTCCTTATGCATATAACAATTCATTA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116288391 30 + 116334831 TGGGTTCTTTATACCTGTAACAGTTCATTA
i micMur3.chr9              I 273 C 0
s proCoq1.NW_012148396v1     13504312 30 +  16154928 TGGGTTCTTTATGCATATAACAGTTCGTTA
i proCoq1.NW_012148396v1    I 366 C 0
s otoGar3.GL873689             458254 30 +   3845361 TAGGTTCTTTATTCATGTAACAACTCATTA
i otoGar3.GL873689          C 0 I 184
s canFam3.chr3               60033719 30 -  91889043 GGGGTTATTTATGCATGTAACAATTCAGTA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             421199 30 +    563711 TTGGTTCCCTATACATATAATAATTCAGTG
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132156 94 + 145441459 I
e calJac3.chr6              154514606  0 - 158406734 C

a score=140308.000000
s hg38.chr15_KI270851v1_alt    182996 10 +    263054 TACTTTCTGA
s panTro5.chr15              73795839 10 -  83230942 TACTTTCTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099362 10 -  99763055 TACTTTCTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148228 10 -    281578 TACTTTCTGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007098 10 + 121039945 TACTTTCTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164316968 10 - 169600520 CATTTTCTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165637933 10 - 171882078 CATTTTCTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492376 10 +   2379783 TATTTTCTGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449439 10 +   4116138 TATTTTCTGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881453 10 +  58131712 TATTTTCTGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502268 10 -   3636681 TACTTTCTGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481048 10 -   4457520 TATTTTCTGA
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             345614 10 -   2682657 GATTTTCTGA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       369847 10 -   2086007 TATTTTCTGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433267 10 +   3831555 TATTTTCTCA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116288421 10 + 116334831 TATTTACTGA
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13504342 10 +  16154928 TATTTTCTGA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             458468 10 +   3845361 tattttttga
i otoGar3.GL873689          I 184 I 123
s canFam3.chr3               60033749 10 -  91889043 TATGTTCTGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             421229 10 +    563711 TGCTTTCTGA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132156 94 + 145441459 I
e calJac3.chr6              154514606  0 - 158406734 C

a score=336235.000000
s hg38.chr15_KI270851v1_alt    183006 32 +    263054 AGCATGGTGTACAGTCACTTTGGAAAC----TGATT----
s panTro5.chr15              73795849 32 -  83230942 AGCATGGTGTACAGTCACTTTGGAAAC----TGATT----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099372 32 -  99763055 AGCATGGTGTACAGTCACTTTGGAAAC----TGATT----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148238 32 -    281578 AGCATGGTGTACAGTCACTTTGGAAAC----TGATT----
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007108 32 + 121039945 AGCATGGTGTACAGTCATTTTGGAAAC----TGATT----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164316978 32 - 169600520 AGCATGGTGTACAGTCACTTTGGAAAC----TGACT----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165637943 32 - 171882078 AGCATGGTGTACAGTCACTTTGGAAAC----TGACT----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492386 32 +   2379783 AGCATGGTGTACAGTCACTTTGGAAAC----TGACT----
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449449 32 +   4116138 AGCATGGTGTACAGTCACTTTGGAAAC----TGACT----
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881463 32 +  58131712 AGCATGGTGTACAGTCACTTTGGAAAC----TGACT----
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502278 32 -   3636681 AGCATGGTGTACAGTCACTTTGGAAAC----TGACT----
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481058 32 -   4457520 AGCATGGTGTACAGTCACTTTGGAAAC----GGACT----
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             345624 16 -   2682657 AGCA----------------TGGAAAC----TGATT----
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       369857 16 -   2086007 AGCA----------------TGGAAAC----TGATT----
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433277 16 +   3831555 AGCA----------------TGGAAAC----TGATT----
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116288431 32 + 116334831 AGCATTGTGTACACTCACTTTGGAAAC----AGATT----
i micMur3.chr9              C 0 I 227
s proCoq1.NW_012148396v1     13504352 32 +  16154928 AGCATTGTGTACGGTCACTTTGGAAAC----TGATT----
i proCoq1.NW_012148396v1    C 0 I 1
s otoGar3.GL873689             458601 36 +   3845361 AGAATTGTCTACAATCACTTTGGAAACGATTTGATT----
i otoGar3.GL873689          I 123 I 1
s canFam3.chr3               60033759 31 -  91889043 AGTATTGT-TACAGTCACTCTGGAAAC----TTCTT----
i canFam3.chr3              C 0 I 8
s dasNov3.JH562051             421239 39 +    563711 AGCATTGTGCACAATCACTCTGCAAAC-TTCTGTTTGATA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132156 94 + 145441459 I
e calJac3.chr6              154514606  0 - 158406734 C

a score=651351.000000
s hg38.chr15_KI270851v1_alt    183038 63 +    263054 -CCTAAGGAATATTCTAGCCAAATCATGTATCTGTGGTTTAGTTTTTCTACA-GTAGGGCTGTGC
s panTro5.chr15              73795881 63 -  83230942 -CCTAAGGAATATTCTAGCCAAATCATGTATCTGTGGTTTAGTTTTTCTACA-GTAGGGCTGTGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099404 63 -  99763055 -CCTAAGGAATATTCTAGCCAAATCATGTATCTGTGGTTTAGTTTTTCTACA-GTAGGGCTGTGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148270 63 -    281578 -CCTAAGGAATATTCTAGCCAAATCATGTATCTGTGGTTTAGTTTTTCTACA-GTAGGGCTGTGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007140 63 + 121039945 -CCTAAGGAATATTCTAGCCAAATCATGTATCTGTACTTTAGTTTTTCTACA-GTAGGGCTGTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317010 62 - 169600520 -CCTAAGGAATATTCCAGCCAAATCATGTATCTGTGCTTTAGTTTTTCTACA--TAGGGCTGTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165637975 62 - 171882078 -CCTAAGGAATATTCCAGCCAAATCATGTATCTGTGCTTTAGTTTTTCTACA--TAGGGCTGTGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492418 62 +   2379783 -CCTAAGGAATATTCCAGCCAAATCATGTGTCTGTGCTTTAGTTTTTCTACA--TAGGGCTGTGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449481 62 +   4116138 -CCTAAGGAATATTCCAGCCAAATCATGTGTCTGTGCTTTAGTTTTTCTACA--TAGGGCTGTGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881495 62 +  58131712 -CCTAAGGAATATTCCAGCCAAATCATGTGCCTGTGCTTTAGTTTTTCTACA--TAGGGCTGTGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502310 62 -   3636681 -CCTAAGGAATATTTCAGCCAAATCATGTGTCTGTGCTTTAGTTTTTCTACA--TAGGGCTGTGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481090 62 -   4457520 -CCTAAGGAATATTCCAGCCAAATCATGTATCTGTGCTTTAGTTTTTCTACA--TAGGGCTGTGC
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             345640 60 -   2682657 -CCTAAGGAATATTCTAGGCAG---ACGTATCTGTGCTTTGGTTTTTCTAGG-GTAGGGCTGTGC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       369873 60 -   2086007 -CCTAAGGAGTATTCTAGGCAA---ATGTATCTGTCCTTTAGTTTTTCTAGG-GCCGGGCTGTGC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433293 60 +   3831555 -CCTAAGGAATATTCTAGGCAA---ATGTATTTGTGCTTTAGTTTTTCTAGG-GCAGGACTGTGC
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13504385 64 +  16154928 -TCTAAGAAATGTCCTGTCCAAGTCATTTATCTGTGCTTTGGTTTTTCTACCAGTAGAGCTGTGC
i proCoq1.NW_012148396v1    I 1 I 153
s otoGar3.GL873689             458638 64 +   3845361 -TCTAAGAAATGTTCTAGCCAAGTTGTTCATGTGTACTTTGATTTTTCCACCATTACACCTGTGC
i otoGar3.GL873689          I 1 C 0
s canFam3.chr3               60033798 62 -  91889043 -TGTAAGGAATTCTCTAGTTAATTTGTTTATATGAGCTTTGATTTTATCACCAGTAGAACTGT--
i canFam3.chr3              I 8 C 0
s dasNov3.JH562051             421278 64 +    563711 CTCTAAGGAAATTTCTAACTGAGTAGTTTATCTGTGCTTTGTCATTTCCCCA-GTAGAGCTATGC
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132156 94 + 145441459 I
e micMur3.chr9              116288463 227 + 116334831 I
e calJac3.chr6              154514606  0 - 158406734 C

a score=384652.000000
s hg38.chr15_KI270851v1_alt    183101 39 +    263054 GGTTGCTGCCTGCTTTATAGGGCATGT-G-GGTTTATATGG
s panTro5.chr15              73795944 39 -  83230942 AGTTGCTGCCTGCTTTACTGGGCATGT-G-GGTTTATGTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099467 39 -  99763055 AGTTGCTGCCTGCTTTACTGGGCATGT-G-GGTTTATGTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148333 39 -    281578 AGTTGCTGCCTGCTTTACTGGGCATGT-G-GGTTTATGTGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007203 39 + 121039945 AGTTGCTGCCTGCCTTATAGGGCATGT-G-GGTTTATGTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317072 39 - 169600520 AGTTGCTGCCTGCTTTCTAGGGCGTGT-G-GGTTTCTGTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638037 39 - 171882078 AGTTGCTGCCTGCTTTCTAGGGCGTGT-G-GGTTTCTGTGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492480 39 +   2379783 AGTTGCTGCCTGCTTTCTAGGGCGTGT-G-GGTTTCTGTGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449543 39 +   4116138 AGTTGCTGCCTGCTTTCTAGGGCGTGT-G-GGTTTCTGTGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881557 39 +  58131712 AGTTGCTGCCTGCTTTCTAGGGCGTGT-G-GGTTTCTGTGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502372 39 -   3636681 AGTTGCTGCCTGCTTTCTAGGGCGTGT-G-GGTTTCTGTGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481152 39 -   4457520 AGTTGCTGCCTGCTTTCTAGGGCGTGT-G-GGTTTCTGTGG
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             345700 38 -   2682657 AGTTGCTGCCTGCTTCATAGGGCGT-T-G-GGTTTATGTGG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       369933 38 -   2086007 AGTTGCTGCCTGCCTCATAGGGCAT-T-G-GGTTTATGTGG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433353 38 +   3831555 AGTTGCTGCCTGCTTCATAGGGTGT-T-G-GGTTTATGTGG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             458702 40 +   3845361 GTTTACCATCTGCTTTGCAGGGTGTGCAG-GGTTTATGTGG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60033860 33 -  91889043 --TTACTGTCTGCTTTGTAGGGTGTGT-GTGGTTTA-----
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             421342 40 +    563711 ATTTACTTTCTGCTTTGTAGGGTGTGC-ATGGTTTATATAG
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132156 94 + 145441459 I
e micMur3.chr9              116288463 227 + 116334831 I
e proCoq1.NW_012148396v1     13504449 153 +  16154928 I
e calJac3.chr6              154514606  0 - 158406734 C

a score=365467.000000
s hg38.chr15_KI270851v1_alt    183140 36 +    263054 TATCTG-CTGTTAC--TTGGGCACAGCAGCACCAACTCA---
s panTro5.chr15              73795983 36 -  83230942 TATCTG-CTGTTAC--TTGGGCACAGCAGCACCAACTCA---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099506 36 -  99763055 TATCTG-CTGTAAC--TTGGGCACAGCAGCATCAACTCA---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148372 36 -    281578 TATCTG-CTGTTAC--TTGGGCACAGCAGCATCAACTCA---
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007242 36 + 121039945 TATCTG-CTGTTAC--TTGGGCACAGCAGCATCAACTCA---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317111 36 - 169600520 CATCTG-CTGTTCC--TTGGGCACAGCAGCATCGAGTCG---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638076 36 - 171882078 CATCTG-CTGTTCC--TTGGGCACAGCAGCATCGAGTCG---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492519 36 +   2379783 CATCTG-CTGTTCC--TTGGGCACAGCAGCATCGAGTCG---
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449582 36 +   4116138 CATCTG-CTGTTAC--TTGGGCACAGCAGCATCGACTTG---
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881596 36 +  58131712 CATCTG-CTGTTAC--TTGGGCACAGCAGCATCGACTCG---
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502411 36 -   3636681 CATCTG-CTGTTAC--TTGGGCACAGCAGCATCGACTCG---
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481191 36 -   4457520 CATCTG-CTGTTAC--TTGGGCACAGCAGCATCAGCTCC---
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             345738 38 -   2682657 TGTCTG-ATGTTACCTTTGGGCACAGCAGCATCCGCTCG---
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       369971 36 -   2086007 TATCTG-ATGTTAC--TTGGGCACAGCAGCATCAACTTG---
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433391 36 +   3831555 TATCTG-ATGTTAC--TTGGGCACAGCAGCATCAACTTG---
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             458742 37 +   3845361 TTTCAG-CTGTTACC-TTGGGCACAGCAGCATAATCTCA---
i otoGar3.GL873689          C 0 I 3
s mm10.chr7                  56132250 36 + 145441459 TATATG-CAGTTTG--TTGGTTGCTATAACATAAACTCA---
i mm10.chr7                 I 94 C 0
s canFam3.chr3               60033893 34 -  91889043 TATCTT-CTGTTAT--TTTGG--CAGCAGCATGAGCTCA---
i canFam3.chr3              C 0 I 3
s dasNov3.JH562051             421382 40 +    563711 TATTTGCCTGTTAT--TTTAATATGGCAGCATAAGCTCATTA
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116288463 227 + 116334831 I
e proCoq1.NW_012148396v1     13504449 153 +  16154928 I
e calJac3.chr6              154514606  0 - 158406734 C

a score=353108.000000
s hg38.chr15_KI270851v1_alt    183176 32 +    263054 TTACAGGATGGAGGGGCAGAACGCCCAGAGCA
s panTro5.chr15              73796019 32 -  83230942 TTACAGGATGGAGGGGCAGAATGCCCAGAGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099542 32 -  99763055 TTACAGGATGGAGGGGCAGAATGCCCAGAGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148408 32 -    281578 TTACAGGATGGAGGGGCAGAATGCCCAGAGCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007278 32 + 121039945 TTACAGGATGGAGGGGCAGAACGCCCAGAGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317147 32 - 169600520 TTACCGGATGGAGGGGCAGAACACCCAGAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638112 32 - 171882078 TTACCGGATGGAGGGGCAGAACACCCAGAGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492555 32 +   2379783 TTACCGGATGGAGGGGCAGAACACCCAGAGCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449618 32 +   4116138 TTACAGGATGGAGGGGCAGAACACCCAGAGCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881632 32 +  58131712 TTACAGGATGGAGGGGCAGAACACCCAGAGCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502447 32 -   3636681 TTACAGGATGGAGGGGCAGAACACCCAGAGCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481227 32 -   4457520 TTACAGGATGGAGGGGCAGAACACCCAGAGCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514606 31 - 158406734 TTACGGAATGGA-GGGTGGAATGCCCAGAGCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             345776 31 -   2682657 TTACGGAATGGA-GGGTAGAACACCCAGAGCA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370007 31 -   2086007 TTACGGAATGGA-GGGTAGAACGCCCAGGGCA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433427 31 +   3831555 TTACGGAATGGA-GGGTAGAACTCCCAGAGCA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             458782 30 +   3845361 TTATAGGGTGTA--GATGGCGCACCCAGAGCA
i otoGar3.GL873689          I 3 C 0
s mm10.chr7                  56132286 24 + 145441459 TTATGGGATGTG--------CTAACAAATACA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60033930 32 -  91889043 TAATAGGATATAGAAGGAGAGTGTCCAGAGCA
i canFam3.chr3              I 3 I 53
s dasNov3.JH562051             421422 32 +    563711 TTACAGGATGTAGGAATAGGGAGCTGAGAGTA
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116288463 227 + 116334831 I
e proCoq1.NW_012148396v1     13504449 153 +  16154928 I

a score=195873.000000
s hg38.chr15_KI270851v1_alt    183208  40 +    263054 --CCC-CTGGGCTC--A--------------------CGTGCGG-TACAGCTGCAGGAGAG-------------------------------------------------------------------------------------------------------------AGCTG
s panTro5.chr15              73796051  41 -  83230942 --CCC-CTGGGCTC--A--------------------CATGCGGTTACAGCTGCAGGACAG-------------------------------------------------------------------------------------------------------------AGCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099574  41 -  99763055 --CCC-CTGGGCTC--A--------------------CGTGCGGTTACAGCTGCAGGACAG-------------------------------------------------------------------------------------------------------------AGCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148440  41 -    281578 --CCC-CTGGGCTC--A--------------------CGTGCGGTTACAGCTGCAGGACAG-------------------------------------------------------------------------------------------------------------AGCTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007310  40 + 121039945 --CCC-CTGGGTGC--A--------------------CATGCGG-TACAGCTGCAGGACAG-------------------------------------------------------------------------------------------------------------AGCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317179  41 - 169600520 --CCC-CTGGGCTC--A--------------------CATGGTGGTACAGCTGCAGGACAG-------------------------------------------------------------------------------------------------------------AGCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638144  41 - 171882078 --CCC-CTGGGCTC--A--------------------CATGGTGGTACAGCTGCAGGACAG-------------------------------------------------------------------------------------------------------------AGCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492587  41 +   2379783 --CCC-CTGGGCTC--A--------------------CATGGTGGTACAGCTGCAGGACAG-------------------------------------------------------------------------------------------------------------AGCTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449650  40 +   4116138 --CCC-C-GGGCTC--A--------------------CATGGTGGTACAGCTGCAGGACAG-------------------------------------------------------------------------------------------------------------AGCTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881664  41 +  58131712 --CCC-CTGGGCTC--A--------------------CATGGTGGTACAGCTGCAGGACAG-------------------------------------------------------------------------------------------------------------AGCTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502479  41 -   3636681 --CCC-CTGGGCTC--A--------------------CATGGTGGTACAGCTGCAGGACAG-------------------------------------------------------------------------------------------------------------AGCTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481259  41 -   4457520 --CCC-CTGGGCTC--A--------------------CATGGTGGTACAGCTGCAGGACAG-------------------------------------------------------------------------------------------------------------AGCTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514637  41 - 158406734 ---CC-CTGGGCTC--A--------------------CATGGTGGTACAGCTGCAGGACAGA------------------------------------------------------------------------------------------------------------AGCTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             345807  23 -   2682657 ---CC-CTGGGCT----------------------------------------CAGCACAGC------------------------------------------------------------------------------------------------------------AGCTG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370038  41 -   2086007 ---CC-CTGGGCTC--A--------------------CATGGTGGTACAGCTGCAGGACAGA------------------------------------------------------------------------------------------------------------AGCTA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433458  40 +   3831555 ---CC-CTGGGCTC--A--------------------CATGGTGGTACAGCTGCAGGACAGA------------------------------------------------------------------------------------------------------------GG-TG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             458812 153 +   3845361 --CCCACTTGTCTTCAG--------------------CATGGCTGTGCATTTTAAGGACATAAGCTATTCCTTTTTTTttttttttttttttttgcagtaccgggtttgaacctgtcacctccggtatatggagccggcaccctactcctttgagccacaggtgccacccAGCTG
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56132310  43 + 145441459 --TTT-TTGTTCTG--A-------------------TCGTGATAGACAATCTTAGGCACATA------------------------------------------------------------------------------------------------------------AGCTG
i mm10.chr7                 C 0 I 6
s dasNov3.JH562051             421454  53 +    563711 CTCAC-CTGCTTTT--ATCAGATCTTTAAGTCTTGGTTAAGATGGTA-ACCTGTAGG----------------------------------------------------------------------------------------------------------------------
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116288463 227 + 116334831 I
e proCoq1.NW_012148396v1     13504449 153 +  16154928 I
e canFam3.chr3               60033962  53 -  91889043 I

a score=49022.000000
s hg38.chr15_KI270851v1_alt    183248 3 +    263054 TCC
s panTro5.chr15              73796092 3 -  83230942 TCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099615 3 -  99763055 TCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148481 3 -    281578 TCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007350 3 + 121039945 TCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317220 3 - 169600520 TCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638185 3 - 171882078 TCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492628 3 +   2379783 TCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449690 3 +   4116138 TCC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881705 3 +  58131712 TCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502520 3 -   3636681 TCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481300 3 -   4457520 TCC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514678 3 - 158406734 TCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             345830 3 -   2682657 TCC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370079 3 -   2086007 TCC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433498 3 +   3831555 TCC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116288690 3 + 116334831 TCC
i micMur3.chr9              I 227 C 0
s otoGar3.GL873689             458965 3 +   3845361 TTC
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56132359 3 + 145441459 TTT
i mm10.chr7                 I 6 C 0
s canFam3.chr3               60034015 3 -  91889043 TCT
i canFam3.chr3              I 53 C 0
s dasNov3.JH562051             421507 3 +    563711 TCT
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13504449 153 +  16154928 I

a score=401908.000000
s hg38.chr15_KI270851v1_alt    183251 24 +    263054 TTTTGGTTTTATGTTTTTAATTAA
s panTro5.chr15              73796095 24 -  83230942 TTTTGGTTTTATGTTTTTAATTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099618 24 -  99763055 TTTTGGTTTTATGTTTTTAATTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148484 24 -    281578 TTTTGGTTTTATGTTTTTAATTAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007353 23 + 121039945 -TTTGGTTTTATGTTTTTAATTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317223 24 - 169600520 TTTTAGTTTTATGTTTTTAATTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638188 24 - 171882078 TTTTAGTTTTATGTTTTTAATTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492631 24 +   2379783 TTTTAGTTTTATGTTTTTAATTAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449693 24 +   4116138 TTGTAGTTTTGTGTTTTTAATTAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881708 24 +  58131712 TTTTAGTTTTATGTTTTTAATTAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502523 24 -   3636681 TTGTAGTTTTATGTTTTTAATTAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481303 20 -   4457520 TTTTAGTTTTATGTTT----TTAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514681 24 - 158406734 TTTCGGTTTTACGTTTTTAATTGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             345833 24 -   2682657 TTTTGGTTTTAAGTTTTTAATTGA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370082 24 -   2086007 TTTTGGTTTTAAGTTTTTAATTGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433501 24 +   3831555 TTTTGGTTTTAAGTTTTTAATTGA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116288693 24 + 116334831 TTTTAGTTTTATGTTTTTAATTAA
i micMur3.chr9              C 0 I 30
s proCoq1.NW_012148396v1     13504602 24 +  16154928 TTTTAGTTTTATGTTTTTAATTAA
i proCoq1.NW_012148396v1    I 153 C 0
s otoGar3.GL873689             458968 24 +   3845361 CTTTAGTTTGATGTTTTTGATTAA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56132362 24 + 145441459 TTTTGATGTTGTAATTTTAATTAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60034018 24 -  91889043 TTTTGGTTTTATGTTTTTAATTAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             421510 24 +    563711 TTCTGGCTTTATGTTTTTAATAAA
i dasNov3.JH562051          C 0 C 0

a score=433715.000000
s hg38.chr15_KI270851v1_alt    183275 31 +    263054 TTCTGTTTCCTCAGATTGATGATTAAATTTA
s panTro5.chr15              73796119 31 -  83230942 TTCTGTTTCCTCAGATTGATGATGAAATTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099642 31 -  99763055 TTCTGTTTCCTCAGATTGATGATGAAATTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148508 31 -    281578 TTCTGTTTCCTCAGATTGATGATGAAATTTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007376 31 + 121039945 TTCTGTTTCCTCAGATTGATGATGAAATTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317247 31 - 169600520 TTCTGTTTCCTCAGATTGATGATGAAATTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638212 31 - 171882078 TTCTGTTTCCTCAGATTGATGATGAAATTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492655 31 +   2379783 TTCTGTTTCCTCAGATTGATGATGAAATTTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449717 31 +   4116138 TTCTGTTTCCTCAGATTGATGATGAAATTTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881732 31 +  58131712 TTCTGTTTCCTCAGATTGATGATGAAATTTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502547 31 -   3636681 TTCTGTTTCCTCAGATTGATGATGAAATTTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481323 31 -   4457520 TTCTGTTTCCTCAGATTGATGATGAAATTTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514705 31 - 158406734 TTCTGTTTCCTCAGAGTGATGATGAAACTTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             345857 31 -   2682657 TTCTGTTTCCTCAGAGTGATGATGAAACTTA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370106 31 -   2086007 TTCTGTTTCCTCAGAGTGATGATGAAACTTA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433525 31 +   3831555 TTCTGTTTCCTCAGAGTGATGATGAAACTTA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13504626 30 +  16154928 CCCCATTTCCTTAGACCGATGATGAAATTT-
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             458992 30 +   3845361 CTTCATTTTCTCAGACTGATGATGAATTTT-
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56132386 26 + 145441459 TTTTGTTTTCTGA-----ACCAACAAATTAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60034042 31 -  91889043 CCCTATTTTCTCAGACTCCTAATGAAATTTA
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             421534 31 +    563711 CCCTTGTTTTTCTCACTGATGATGAAATTTA
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116288717 30 + 116334831 I

a score=3378285.000000
s hg38.chr15_KI270851v1_alt    183306 169 +    263054 -TTTTTCCAGCCTGACCAAGAAGGCGTCACCATACCAGATCTGGGGAGTCTCTCCTCACCTCTGATAGACACAGAGAGGAATCTGGGCCTGCTTCTCGGATTACACGCTTCCTATTTAGCAATGAGCACACCGCTGTCTCCTGTCGAGATTGAATGTGCCAGTAAGAAAA
s panTro5.chr15              73796150 169 -  83230942 -TTTTTCCAGCCTGACCAAGAAATCGTCACCATACCAGATCTGGGGAGTCTCTCTTCACCTCTGATAGACACAGAGAGGAATCTGGGCCTGCTTCTCGGATTACACGCTTCCTATTTGGCAATGAGCACACCGCTGTCTCCTGTCGAGATTGAATGTGCCAGTAAGAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099673 169 -  99763055 -TTTTTCCAGCCTGACCAAGAAATCGTCACCATACCAGATCTGGGGAGTCTCTCTTCACCTCTGATAGACACAGAGAGGAATCTGGGCCTGCTTCTCGGATTACACGCTTCCTATTTGGCAATGAGCACACCGCTGTCTCCTGTCGAGATTGAATGTGCCAGTAAGAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148539 169 -    281578 -TTTTTCCAGCCTGACCAAGAAATCGTCACCATACCAGATCTGGGGAGTCTCTCTTCACCTCTGATAGACACAGAGAGGAATCTGGGCCTGCTTCTCGGATTACACGCTTCCTATTTGGCAATGAGCACACCGCTGTCTCCTGTCGAGATTGAATGTGCCAGTAAGAAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007407 169 + 121039945 -TTTTTCCAGCCTGACCAAGAAGTTGTCACCATACCAGATCTGGGAAGTCTCTCTTCACCTCTGATAGACACAGAGAGGAATCTGGGCCTGCTTCTCGGATTACACGCTTCCTATTTAGCAATGAGCACACCGTTGTCTCCTGTCGAGATTGAATGTGCCAGTAAGAAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317278 169 - 169600520 -TTTTTCCAGCCTGACCAAGAAGTTGTCACCATACCAGACCTGGGAAGTCTCTCTTCACCTCTGATAGACACAGAGAGGAATCTGGGCCTGCTTCTTGGATTACACGCCTCCTATTTAGCAATGAGCACACCGCTGTCTCCTGTTGAGATTGAATGTGCCAGTAAGAAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638243 169 - 171882078 -TTTTTCCAGCCTGACCAAGAAGTTGTCACCATACCAGACCTGGGAAGTCTCTCTTCACCTCTGATAGACACAGAGAGGAATCTGGGCCTGCTTCTTGGATTACACGCCTCCTATTTAGCAATGAGCACACCGCTGTCTCCTGTTGAGATTGAATGTGCCAGTAAGAAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492686 169 +   2379783 -TTTTTCCAGCCTGACCAAGAAGTTGTCACCATACCAGACCTGGGAAGTCTCTCTTCACCTCTGATAGACACAGAGAGGAATCTGGGCCTGCTTCTTGGATTACACGCCTCCTATTTAGCAATGAGCACACCGCTGTCTCCTGTTGAGATTGAATGTGCCAGTAAGAAAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449748 169 +   4116138 -TTTTTCCAGCCTGACCAAGAAGTTGTCACCATACCAGATCTGGGAAGTCTCTCTTCACCTCTGATAGACACAGAGAGGAATCTGGGCCTGCTTCTTGGATTACACGCCTCCTATTTAGCAATGAGCACACCGCTGTCTCCTGTTGAGATTGAATGTGCCAGTAAGAAAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881763 169 +  58131712 -TTTTTCCAGCCTGACCAAGAAGTTGTCACCATACCAGATCTGGGAAGTCTCTCTTCACCTCTGATAGACACAGAGAGGAATCTGGGCCTGCTTCTTGGATTACACGCCTCCTATTTAGCAATGAGCACACCGCTGTCTCCTGTTGAGATTGAATGTGCCAGTAAGAAAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502578 169 -   3636681 -TTTTTCCAGCCTGACCAAGAAGTTGTCACCATACCAGATCTGGGAAGTCTCTCTTCACCTCTGATAGACACAGAGAGGAATCTGGGCCTGCTTCTTGGATTACACGCCTCCTATTTAGCAATGAGCACACCGCTGTCTCCTGTTGAGATTGAATGTGCCAGTAAGAAAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481354 169 -   4457520 -TTTTTCCAGCCTGACCAAGAAGTTGTCACCATACCAGATCTGGGAAGTCTCTCTTCACCTCTGATAGACACAGAGAGGAATCTGGGCCTGCTTCTTGGATTACACGCCTCCTATTTAGCAATGAGCACCCCGCTGTCTCCTGTTGAGATTGAATGTGCCAGTAAGAAAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514736 169 - 158406734 -TTTTTCCAGCCTGACCAAGAAGTTGTCACCATACCAGATCTCGGAAGTCTCTCTTCACCTCTGATAGACACAGAGAGGAATCTGGGCCTGCTTCTTGGATTACACGCTTCCTATTTAGCAATGAGCACGCCGCTGTCTCCTGTCGAGATCGAATGTGCCAGTAAGAAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             345888 169 -   2682657 -TTTTTCCAGCCTGATCAAGAAGTTGTCACCATACCAGATTTGGGAAGTCTCTCTTCACCTCTAATAGACACAGAGAGGAATCTGGGCCTGCTTCTCGGATTACATGCTTCCTATTTAGCAATGAGCACGCCGCTGTCTCCTGTCGAGATCGAATGTGCCAGTAAGAAAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370137 169 -   2086007 -TTTTTCCAGCCTGACCAAGAAGTTGTGACCATACCAGATCTGGGAAGTCTCTCTTCACCTCTGATAGACACAGAGAGGAATCTGGGCCTGCTTCTCGGATTACACGCTTCCTATTTAGCAATGAGCACGCCGCTGTCTCCTGTCGAGATCGAATGTGCCAGTAAGAAAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433556 169 +   3831555 -TTTTTCCAGCCTGACCAAGAAGTTGTCACCATACCAGATCTGGGCAGTCTCTCTTCACCTCTGATAGACACAGAGAGGAATCTGGGCCTGCTTCTCGGATTACACGCTTCCTATTTAGCAATGAGCACGCCGCTGTCTCCTGTCGAGATCGAATGTGCCAGTAAGAAAA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116288747 169 + 116334831 -TTTTTCTAGCCTGACCAAGAAGTTGTTACCATACCGGATCTGGGAAGTCTCTCTTCACCTCTGATAGACACAGAGAGGAATCTGGGCCTGCTCCTTGGGTTACACGCTTCCTACTTAGCAGTGAGCACGCCACTGTCTCCTGTCGAGGTCGAATGTGCCAGTAAGAAAA
i micMur3.chr9              I 30 I 134
s proCoq1.NW_012148396v1     13504656 169 +  16154928 -TTTTTCTAGCCTGACCAAGAAGTTGTTACCATACCAGATCTGGGAAGTCTCTCTTCACCTCTGATAGACACAGAGAGGAATCTGGGCCTGCTCCTTGGGTTACACGCTTCCTACTTAGCAGTGAGCACGCCGCTGTCTCCTGTCGAGGTCGAATGTGCCAGTAAGAAAA
i proCoq1.NW_012148396v1    C 0 I 108
s otoGar3.GL873689             459022 169 +   3845361 -TCTTTGTAGCCTGACCAAGAGGTGGTCACCGTACCAGATCTGGGAAGTCTGTCTTCACCTCTGATAGACACAGAGCGGAATCTGGGCCTGCTTCTTGGATTACATGCTTCCTATTTAGCAATGAGTACGCCACTGTCTCCTGTCGAGGTCGAATGTGCCAGTAAGAAAA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56132412 169 + 145441459 -TTTTTCCAGCCTGACCAAGAAGTTGTTACCATACCAGATCTTGGAAGTTTGTCTTCACCACTGATTGACACAGAGAGGAACCTGGGCCTACTTCTTGGATTGCATGCTTCTTATTTAGCAATGAGCACACCACTATCTCCTGTGGAGGTTGAATGCGCCAGTAAGAACA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60034074 169 -  91889043 -CTTTCCAAGCCTGACCAAGAAGTTGTTACCATACCAGATCTGGGAAGTCTCTCTTCACCTCTAATAGACACAGAGAGGAATCTGGGCCTGCTTCTCGGATTACATGCTTCCTATTTGGCTATGAGCACACCACTGTCTCCAGTCGAGATCGAATGTGCCAGTAAGAAAA
i canFam3.chr3              I 1 C 0
s dasNov3.JH562051             421565 170 +    563711 TTTTTCCCAGCCTGATCAAGAAGTCGTTACCATACCAGACCTGGGAAGTCTCTCTTCACCTCTTATAGACACAGAGAGAAATCTGGGCCTTCTCCTCGGATTACATGCCTCCTACTTGGCAATGAGTACACCGTTGTCTCCTGTTGAGGTTGAATGTGCCAGTAAGAAAA
i dasNov3.JH562051          C 0 C 0

a score=237302.000000
s hg38.chr15_KI270851v1_alt    183475 21 +    263054 TCTT----TACTTTTTG----CT----AATTAG
s panTro5.chr15              73796319 21 -  83230942 TCTT----TGTTTTTTG----CT----GATCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099842 21 -  99763055 TCTT----TGCTTTTTG----CT----GATCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148708 21 -    281578 TCTT----TGCTTTTTG----CT----GATCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007576 21 + 121039945 TCTT----TGCTTTTTG----CT----GATTAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317447 25 - 169600520 TCTTTTTGTGCTGTTTG----CT----GATTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638412 21 - 171882078 TCTT----TGCTGTTTG----CT----GATTAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492855 21 +   2379783 TCTT----TGCTGTTTG----CT----GATTAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449917 21 +   4116138 TCTT----TGCTGTTTG----CT----GATTAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881932 21 +  58131712 TCTT----TGCTGTTTG----CT----GATTAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502747 21 -   3636681 TCTT----TGCTGTTTG----CT----GATTAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481523 21 -   4457520 TCTT----TGCTGTTTG----CT----GATTAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514905 21 - 158406734 TCTT----TGCTTTTTG----CT----GATTAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             346057 21 -   2682657 TCTT----TGCTTTTTG----CT----GATTAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370306 21 -   2086007 TCTT----TGCTTTCTG----CT----GATTAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433725 21 +   3831555 TCCT----TTCTTTTTG----CT----GATTAG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             459191 24 +   3845361 -TTT----TGTTCTCTG----CTAACCGATTAG
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56132581 21 + 145441459 AATT----TATTTTTTG----TT----AACCAG
i mm10.chr7                 C 0 I 117
s canFam3.chr3               60034243 17 -  91889043 ATTT----TGCTTTCTG----CT----AA----
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             421735 25 +    563711 ATTC----TACTTTCTGTGAACT----GATTAG
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116288916 134 + 116334831 I
e proCoq1.NW_012148396v1     13504825 108 +  16154928 I

a score=389221.000000
s hg38.chr15_KI270851v1_alt    183496 34 +    263054 CAGATTTTTTTTTTTTTGAACTGT-AAGTGCCATT
s panTro5.chr15              73796340 32 -  83230942 CAGA--TTATTTTTTTTGAACTGT-AAGTGCCATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099863 31 -  99763055 CAGA--TTA-TTTTTTTGAACTGT-AAGTGCCATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148729 32 -    281578 CAGA--TTATTTTTTTTGAACTGT-AAGTGCCATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007597 32 + 121039945 CAGA--TTATTTTTTTTGAACTGT-AAGTGCCATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317472 32 - 169600520 CAGA--TTATTTTTTTTGAACTGT-AAGTGCCATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638433 32 - 171882078 CAGA--TTATTTTTTTTGAACTGT-AAGTGCCATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492876 32 +   2379783 CAGA--TTATTTTTTTTGAACTGT-AAGTGCCATT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449938 32 +   4116138 CAGA--TTATTTTTTTTGAACTGT-AAGTGCCATT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881953 32 +  58131712 CAGA--TTATTTTCTTTGAACTGT-AAGTGCCATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502768 32 -   3636681 CAGA--TTATTTTTTTTGAACTGT-AAGTGCCATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481544 32 -   4457520 CAGA--TTATTATTTTTGAACTGT-AAGTGCCATT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514926 32 - 158406734 CAGA--TTATTGTTTTTGAACTGT-AAGTGCCATT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             346078 32 -   2682657 CAGA--TTATTGTTTTTGAACTGT-AAGTGTCATT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370327 32 -   2086007 CAGA--TTATTGTTTTTGAACTGT-AACCGTCATT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433746 32 +   3831555 CAGA--TTATTGTTTTTGAACTGT-AAGTGCCATT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             459215 33 +   3845361 CAGA--TTATTTTAGATGAACCATGAAGTGCCACC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034260 31 -  91889043 CAG---CTACTTTAGCTGAGCTGT-AAGTGCCATT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             421760 32 +    563711 CACA--TTATTTTAGTAGAGCCTT-AAGTGCCATT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116288916 134 + 116334831 I
e proCoq1.NW_012148396v1     13504825 108 +  16154928 I

a score=64430.000000
s hg38.chr15_KI270851v1_alt    183530 5 +    263054 AAGAG
s panTro5.chr15              73796372 5 -  83230942 AAGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099894 5 -  99763055 AAGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148761 5 -    281578 AAGAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007629 5 + 121039945 AAGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317504 5 - 169600520 AAGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638465 5 - 171882078 AAGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492908 5 +   2379783 AAGAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449970 5 +   4116138 AAGAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881985 5 +  58131712 AAGAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502800 5 -   3636681 AAGAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481576 5 -   4457520 AAGAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514958 5 - 158406734 AAGAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             346110 5 -   2682657 AAGAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370359 5 -   2086007 AAGAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433778 5 +   3831555 AGGAG
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60034291 5 -  91889043 TAGAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             421792 5 +    563711 AAGAG
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116288916 134 + 116334831 I
e proCoq1.NW_012148396v1     13504825 108 +  16154928 I
e otoGar3.GL873689             459248 0 +   3845361 C

a score=12376.000000
s hg38.chr15_KI270851v1_alt    183535 1 +    263054 T
s panTro5.chr15              73796377 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099899 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148766 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007634 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317509 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638470 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492913 1 +   2379783 T
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449975 1 +   4116138 T
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881990 1 +  58131712 T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502805 1 -   3636681 T
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481581 1 -   4457520 T
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514963 1 - 158406734 T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             346115 1 -   2682657 T
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370364 1 -   2086007 T
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433783 1 +   3831555 T
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60034296 1 -  91889043 T
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116288916 134 + 116334831 I
e proCoq1.NW_012148396v1     13504825 108 +  16154928 I
e dasNov3.JH562051             421797 0 +    563711 C
e otoGar3.GL873689             459248 0 +   3845361 C

a score=689341.000000
s hg38.chr15_KI270851v1_alt    183536 70 +    263054 GGGAGAGggccaggcacagtggttcatgcctgtaatcccagcactttgggaggttgtggcacgtggattg
s panTro5.chr15              73796378 70 -  83230942 GGGAGAGggccaggcacagtggttcatgcctgtaatcccagcactttgggaggttgtggcacgtggattg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74099900 70 -  99763055 GGGAGAGggccaggcacagtggttcatgcctgtaatcccagcagtttgggaggttgtggcacgtggattg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148767 70 -    281578 GGGAGAGggccaggcacagtggttcatgcctgtaatcccagcagtttgggaggttgtggcacgtggattg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007635 70 + 121039945 GGGAGAGggccaggcacagtggttcatgcctgtaatcccggcactttgggaggttgtgacacgtgcattg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317510 70 - 169600520 GGGAGAGggccaggcacagtggttcttgcctgtaatcccagcactttgggaggttgaggcaggtgaattg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638471 70 - 171882078 GGGAGAGggccaggcacagtggttcttgcctgtaatcccagcactttgggaggttgaggcaggtgaattg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492914 70 +   2379783 GGGAGAGggccaggcacagtggttcttgcctgtaatcccagcactttgggaggttgaggcgggtgaattg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       449976 70 +   4116138 GGGAGAGggccaggcacagtggttcttgcctgtaatcccagcactttgggaggttgaggcaggtgaattg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53881991 69 +  58131712 GGGAGAGgaccaggcacagtggttcttgcctgtaatcccagcactttgggaggttgaggca-gtgaattg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502806 70 -   3636681 GGGAGAGggccaggcacagtggttcttgcctgtaatcccagcactttgggaggttgaggcaggtgaattg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481582 70 -   4457520 GGGAGAGggccaggcacaggggttcttgcctgtaatcctagcactttgggaggttgaggcaggtgaattg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154514964 70 - 158406734 TGGAGAGggccagacgcagtggctcatgcctgtaatcccagcactgtgggaggctgaggcaggtggatta
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             346116 70 -   2682657 GGAAGAGggccagacacagtggctcatgcctgtaatcccagcactttgggaggctgaggcaggtggatta
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370365 70 -   2086007 GGGAGAGggccagacacagtggctcatgcctgtaatcccagccctttgggaggctgaggcaggtggatta
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433784 70 +   3831555 GGGAGAGggtcagacacagtggctcatgcctgtaattccagcacttcgggaggctgaggcaggtgcatta
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116288916 134 + 116334831 I
e proCoq1.NW_012148396v1     13504825 108 +  16154928 I
e dasNov3.JH562051             421797  0 +    563711 C
e canFam3.chr3               60034297  0 -  91889043 C
e otoGar3.GL873689             459248  0 +   3845361 C

a score=1661105.000000
s hg38.chr15_KI270851v1_alt    183606 196 +    263054 cttgagatcaagattttgagaccagcctgggcaacatggca-----aaaccccatctctac-aaaaaacacaaaaattagccaggcatgttggcacgtatttgtagtcccagatactcaggaggctgaggtaggaggattgcttgagcctgggaggttgaggctgcagtgagtcatgatcataccactgcactc----cagcctgg
s panTro5.chr15              73796448 200 -  83230942 cttgaggtcaagagtttgagaccagcctgggcaacatggca-----aaaccccatctctac-aaaaaacacaaaaattagccaggcatgttggcacgtatttgtagtcccagatactcaggaggctgaggtaggaggatcgcttgagcctgggaggttgaggctgcagtgagtcatgatcataccactgcactccagGCagcctgg
i panTro5.chr15             C 0 I 66
s panPan2.chr15              74099970 196 -  99763055 cttgaggtcaagagtttgagaccagcctgggcaacatggca-----aaaccccatctctac-aaaaaacacaaaaattagccaagcatgttggcacgtatttgtagtcccagatactcaggaggctgaggtaggaggatcgcttgagcctgggaggttgaggctgcggtgagtcatgatcataccactgcactc----cagcctgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       148837 197 -    281578 cttgaggtcaagagtttgagaccagcctgggcaacatggca-----aaaccccatctctacaaaaaaacacaaaaattagccaggcatgttggcacgtatttgtagtcccagatactcaggaggctgaggtaggaggatcgcttgagcctgggaggttgaggctgcagtgagtcatgatcatagcactgcactc----cagcctgg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007705 201 + 121039945 cttgaggtcaagagtttgaggccagcctgggcaagaggctggtctcaaaccccatgtctac-aaaaaatacaaaaattaaccaggcatggtggcatgtacctgtagtcccagatactcaggaggctgaggtaggaggatcacttgagcctgggaggttgaggctgcagtgagtcatgatgataccactgcactc----cagcctga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317580 185 - 169600520 cttgaggtcaagagtttgagaccagcctgggcaacatggca-----aaaccccatctctac-a--------aaaaattagccaggcatggtggcacgtacgt---gtcgcagatactcaagaggctgaggtaggaggatcgcttgagcctgggaggttgaggctgcagtgagttgtgattgtaccgctgcactc----cagcctgg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638541 188 - 171882078 cttgaggtcaagagtttgagaccagcctgggcaacatggca-----aaaccccatctctac-a--------aaaaattagccaggcatggtggcacgtacgtgtcgtcgctgatactcaagaggctgaggtaggaggatcgcttgagcctgggaagttgaggctgcagtgagttgtgattgtaccgctgcactc----cagcctgg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       492984 195 +   2379783 cttgaggtcaagagtttgagaccagcctgggcaacatggca-----aaaccccatctctac-aaaaaatacaaaaattagccaggcgtgttggc-cgttcgtgtcgtcgcagatactcaggaggctgaggtaggaggatcgcttgagcctgggaggttgaggctgcagtgagttgtgattgtaccactgcactc----cagcctgg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450046 196 +   4116138 cttgaggtcaagagtttgagaccagcctgggcaacatggca-----aaaccccatctctac-aaaaaatacaaaaattagccaggcatggtggcacgtacgtgtagtcgcagatactcaagaggctgaggtaggaggatcgcttgagcctgggaggttgaggctgcagtgaggtgtgatcataccactgcactc----cagcctgg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882060 196 +  58131712 cttgaggtcaagagtttgagaccagcctgggcaacatggca-----aaaccccatctctac-aaaaaatacaaaaattagccaggcatggtggcacgtacatgtagtcgcagatactcaagaggctgaggtaggaggatcacttgagcctgggaggttgaggctgcagtgagtcgtgatcataccactgcactc----cagcctgg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       502876 196 -   3636681 cttgaggtcaagagtttgagaccagcctgggcaacatggca-----aaaccccatctctac-aaaaaatacaaaaattagccaggcatggtggcacgtacgtgtagtcgcagatactcaagaggctgaggtaggaggatcgcttgagcctgggaggttgaggctgcagtgagttgtgatcataccactgcactc----cagcctgg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481652 196 -   4457520 cttgacgtcaagagtttgagaccagcctgggcaacatggca-----aaaccccatctctac-aaaaaatacaaaaattagccaggcatggtggcacgtacgtgtagtcgcagatactcaagaggctgaggtaggaggatcgcttgagcctgggaggttgaggctgcagtgagtcatgatcataccactgcactc----cagcctgg
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346186 196 -   2682657 cgtgaggtcaagagtttgagaccaacctgggcaacatggca-----aaaccccatctctac-caaaaatacaaaaattagccaggcatggtggcacatgcctgtagtccgagatactcaggaggctgaggtaggaggatcgcttgagcctgggagtttgaggctgcagtgagccatgatcacactactgcactc----catcctca
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370435 196 -   2086007 cttgaggtcaagagtttgagaccaacctggggaacatggca-----aaaccccatctctac-aaaaaacacaaaaattaggaaggcatggtggcccatacctgtagtctgagatactgaggaggctgaggtaggaggatcgcttgagcctgggagcttgaggctgcagtgagccacggtcacactgctgcactc----caacctcg
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       433854 196 +   3831555 cttgaggtcaagagattgagaccaacctgggcaacatggca-----aaaccctatctctac-aaaaaatacaaaaattagccaggcatggtggcacatacctatagtccgagatacttaggaggctgaggtaggaggatcacttgagcctgggaggttgaggctgcagtgagccatgatcacactactgcactc----caacctgg
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116288916 134 + 116334831 I
e proCoq1.NW_012148396v1     13504825 108 +  16154928 I
e dasNov3.JH562051             421797   0 +    563711 C
e canFam3.chr3               60034297   0 -  91889043 C
e otoGar3.GL873689             459248   0 +   3845361 C
e calJac3.chr6              154515034   0 - 158406734 C

a score=70997.000000
s hg38.chr15_KI270851v1_alt    183802 10 +    263054 gtgacagagc
s panPan2.chr15              74100166 10 -  99763055 gtgacagaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149034 10 -    281578 gtgacagagc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007906 10 + 121039945 gtgacagagc
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7              164317765 10 - 169600520 gtgacacagc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638729 10 - 171882078 gtgacacagc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493179 10 +   2379783 gtgacacagc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450242 10 +   4116138 gtgacacagc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882256 10 +  58131712 gtgacacagc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503072 10 -   3636681 gtgacacagc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481848 10 -   4457520 gtgacacagc
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346382 10 -   2682657 gtggcagagc
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370631 10 -   2086007 gtggcagagc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434050 10 +   3831555 gtggcagagc
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116288916 134 + 116334831 I
e proCoq1.NW_012148396v1     13504825 108 +  16154928 I
e dasNov3.JH562051             421797  0 +    563711 C
e canFam3.chr3               60034297  0 -  91889043 C
e otoGar3.GL873689             459248  0 +   3845361 C
e panTro5.chr15              73796648 66 -  83230942 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=110755.000000
s hg38.chr15_KI270851v1_alt    183812 13 +    263054 aagactctctctt
s panTro5.chr15              73796714 13 -  83230942 aagactctctctt
i panTro5.chr15             I 66 C 0
s panPan2.chr15              74100176 13 -  99763055 aagactctctctt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149044 13 -    281578 aagagtctctctt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007917 11 + 121039945 aaga--ctgtctt
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr7              164317775 13 - 169600520 aagactctctctt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638739 13 - 171882078 aagactctctctt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493189 13 +   2379783 aagactctctctt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450252 13 +   4116138 aagactctctctt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882266 13 +  58131712 aagactctctctt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503082 13 -   3636681 aagactctctctt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481858 13 -   4457520 aagactctctctt
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346392 13 -   2682657 aagactctctctt
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370641 13 -   2086007 aagactcactctt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434060 13 +   3831555 aagactctctctt
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116288916 134 + 116334831 I
e proCoq1.NW_012148396v1     13504825 108 +  16154928 I
e dasNov3.JH562051             421797  0 +    563711 C
e canFam3.chr3               60034297  0 -  91889043 C
e otoGar3.GL873689             459248  0 +   3845361 C
e calJac3.chr6              154515034  0 - 158406734 C

a score=5499.000000
s hg38.chr15_KI270851v1_alt    183825 1 +    263054 t
s panTro5.chr15              73796727 1 -  83230942 t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100189 1 -  99763055 t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149057 1 -    281578 t
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007928 1 + 121039945 t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317788 1 - 169600520 t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638752 1 - 171882078 t
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493202 1 +   2379783 t
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450265 1 +   4116138 t
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882279 1 +  58131712 t
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503095 1 -   3636681 t
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481871 1 -   4457520 t
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346405 1 -   2682657 t
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370654 1 -   2086007 a
i cebCap1.NW_016107707v1    C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116288916 134 + 116334831 I
e proCoq1.NW_012148396v1     13504825 108 +  16154928 I
e dasNov3.JH562051             421797 0 +    563711 C
e canFam3.chr3               60034297 0 -  91889043 C
e aotNan1.NW_018503298v1       434073 0 +   3831555 C
e otoGar3.GL873689             459248 0 +   3845361 C
e calJac3.chr6              154515034 0 - 158406734 C

a score=42588.000000
s hg38.chr15_KI270851v1_alt    183826 6 +    263054 aaaaaa
s panTro5.chr15              73796728 6 -  83230942 aaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100190 6 -  99763055 aaaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149058 6 -    281578 aaaaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007929 6 + 121039945 aaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317789 6 - 169600520 aaaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638753 6 - 171882078 aaaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493203 6 +   2379783 aaaaaa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450266 6 +   4116138 aaaaaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882280 6 +  58131712 aaaaaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503096 6 -   3636681 aaaaaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481872 6 -   4457520 aaaaaa
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       370655 6 -   2086007 aaaaaa
i cebCap1.NW_016107707v1    C 0 I 4
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116288916 134 + 116334831 I
e proCoq1.NW_012148396v1     13504825 108 +  16154928 I
e dasNov3.JH562051             421797 0 +    563711 C
e canFam3.chr3               60034297 0 -  91889043 C
e aotNan1.NW_018503298v1       434073 0 +   3831555 C
e otoGar3.GL873689             459248 0 +   3845361 C
e saiBol1.JH378292             346406 0 -   2682657 C
e calJac3.chr6              154515034 0 - 158406734 C

a score=1571013.000000
s hg38.chr15_KI270851v1_alt    183832 290 +    263054 GCAGGAGATggcc-aggcagtggctcatgcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggagttcaagaccagcctggccaatgtggtgaaaccccatgtctactaaaaatgc-aaaaattagctgggtgtggtgacgggtgcctgtaatcctaggtactcgggaggctgaggt-aggagaattgcttgaacccaggagacggaggttgcagtgagctgagatcacgccactgcactccagcctgggtgacaagagcgagactcggtctc
s panTro5.chr15              73796734 280 -  83230942 GTAGGAGATggcc--ggcagtggctcatgcctgtaat-ccagcactttgg--agctgaggcgggtggat-acctgaggtcaggagttcaagaccggcctggccaatgtggtgaaaaccactgtctactaaaaatgcaaaaaattagctgg--ctggtga-gggtgcctgtaatcc-agttactcgggaggctgaggtaaggagaa-tgcttgaacccaggagacggaggttgcagttagc-gagacgccgccactgcactcaagcctgggtgat-agagcgagactccgtctc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100196 290 -  99763055 GTAGGAGATggcc-gggcagtggctcatgcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggagttcaagaccggcctggccaatgtggtgaaaccccatgtctactaaaaatgc-aaaaattagctgggcgtggtgacaggtgcctgtaatcccagttactcgggaggctgaggt-aggagaattgcttgaacccaggagacggaggttgcagtgagccgagatcgcgccactgcactcaagcctgggtgacaagagcgagactccatctc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149064 290 -    281578 GTAGGATATggcc-aggcggtggttcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcaggagtccaagaccagcctggccaatgtggtgaaaccccatgtctactaaaaatgc-aaaaattagctgggcgtggtgacgggtgcctgtaatcccagttactcgggaggctgaggt-aggagaattgcttgaacccaggagacggaggttgcagtgagccgagatcgcgccactgcactccagcctgggtgacaagagcgagactccgtctc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71007935 290 + 121039945 GTAGGAGATggccaaggtggtagctgatgcctgtaatcccagtcctttgg-aggctgaggtgggtggatcacctgaggtcaggaattcaggaccagcctggccaaggtagtgaaaccccatgtctactaaaaatgc-aaaaattagctgggtggggtgacgggtgcctgtagtcccagttactcgggaggctgaggt-aggagaattgcttgaacccaggagacggaggttgcagtgagctgagatcgcaccactgcactccagcctgggtgagaagagtgagaccccgtctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164317795 290 - 169600520 GTAGGAGATggcc-aggtggcggctcatgcctgtaatcccagcaatttgggaggctgaggcaggtgaatcacctgaggtcaggagtttgagaccagcctggtcaacgtggtgaaaccccatgtctactaaaaatgc-aaaaattagctgggcatggtgacgggcgcctgtaatcccagttactcggaaggctgaggt-aggagaattgcttgaacccaggagacagaggttataatgagccgagatcacgccactgcactctagcctgggtgacaagagcgagactccgtctc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165638759 290 - 171882078 GTAGGAGATggcc-aggtggcggctcatgcctgtaatcccagcaatttgggaggctgaggcaggtgaatcacctgaggtcaggagtttgagaccagcctggtcaacgtggtgaaaccccatgtctactaaaaatgc-aaaaattagctgggcatggtgacgggcgcctgtaatcccagttactcggaaggctgaggt-aggagaattgcttgaacccaggagacagaggttataatgagccgagatcacgccactgcactctagcctgggtgacaagagcgagactccgtctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493209 290 +   2379783 GTAGGAGATggcc-aggtggcggctcatgcctgtaatcccagcaatttgggaggctgaggcaggtgaatcacctgaggtcaggagtttgagaccagcctggtcaacgtggtgaaaccccatgtctactaaaaatgc-aaaaattagctgggcatggtgacgggcgcctgtaatcccagttactcggaaggctgaggt-aggagaattgcttgaagccaggagacagaggttataatgagccgagatcacgccactgcactctagcctgggtgacaagagcgagactccgtctc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450272 290 +   4116138 GTAGGAGATggcc-aggtggtggctcatgcctgtaatcccagcaatttgggaggctgaggcaggtgaatcacctgaggtcaggagtttgagaccagcctggtcaacgtggtgaaaccccatgtctactaaaaatgc-agaaattagctgggcatggtgacgggcgcctgtaatcccagttactcggaaggctgaggt-aggagaattgcttgaacacaggagacagaggttataatgagccgagatcacgccactgcactctagcctgggtgacaagagcgagactccatctc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882286 290 +  58131712 GTAGGAGATggcc-aggtggtggctcatgcctgtaatcccagcaatttgggaggctgaggcaggtgaatcacctgaggtcaggagtttgagacccgcctggtcaacgtggtgaaaccccatgtctactaaaaatgc-aaaaattagctgggcatggtgaggggcgcctgtaatcccagttactcggaaggctgaggt-aggagaattgcttgaacccaggagacagaggttataatgagccgagatcacgccactgcactctagcctgggtgacaagagcgagactccgtctc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503102 290 -   3636681 GTAGGAGATggcc-aggtggtggctcatgcctgtaatcccagcaatttgggaggctgaggcaggtgaatcacctgaggtcaggagtttgagaccagcctggtcaacgtggtgaaaccccatgtctactaaaaatgc-aaaaattagctgggcatggtgacgggcgcctgtaatcccagttactcggaaggctgaggt-aggagaattgctcgaacacaggagacagaggttataatgagccgagatcacgccactgcactctagcctaggtgacaagagcaagactccgtctc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       481878 290 -   4457520 GTAGGAGATggcc-aggtggtggctcatgcctgtaatcccagcaatttaggaggctgaggcaggtggataacctgaggtcaggagtttgagaccagcctggtcaacgtggtgaaatcccaagtctactaaaaatgc-aaaaattagctgggcatggtaacgggcacctgtaatcccagttactcggaaggctgaggt-aggagaattgcttgaacccaggagacggaggttataatgagctgagatcacgccactgcactacagcctgggtgacaagagcgagactccgtctc
i colAng1.NW_012115278v1    C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116288916 134 + 116334831 I
e proCoq1.NW_012148396v1     13504825 108 +  16154928 I
e dasNov3.JH562051             421797   0 +    563711 C
e canFam3.chr3               60034297   0 -  91889043 C
e aotNan1.NW_018503298v1       434073   0 +   3831555 C
e otoGar3.GL873689             459248   0 +   3845361 C
e cebCap1.NW_016107707v1       370661   4 -   2086007 I
e saiBol1.JH378292             346406   0 -   2682657 C
e calJac3.chr6              154515034   0 - 158406734 C

a score=273.000000
s hg38.chr15_KI270851v1_alt    184122 1 +    263054 a
s nomLeu3.chr6               71008225 1 + 121039945 a
i nomLeu3.chr6              C 0 C 0
s aotNan1.NW_018503298v1       434073 1 +   3831555 a
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116288916 134 + 116334831 I
e proCoq1.NW_012148396v1     13504825 108 +  16154928 I
e dasNov3.JH562051             421797 0 +    563711 C
e canFam3.chr3               60034297 0 -  91889043 C
e otoGar3.GL873689             459248 0 +   3845361 C
e cebCap1.NW_016107707v1       370661 4 -   2086007 I
e panPan2.chr15              74100486 0 -  99763055 C
e panTro5.chr15              73797014 0 -  83230942 C
e gorGor5.CYUI01000141v1       149354 0 -    281578 C
e colAng1.NW_012115278v1       482168 0 -   4457520 C
e manLeu1.NW_012102332v1       503392 0 -   3636681 C
e cerAty1.NW_012001462v1       450562 0 +   4116138 C
e macNem1.NW_012011934v1       493499 0 +   2379783 C
e rheMac8.chr7              164318085 0 - 169600520 C
e chlSab2.chr26              53882576 0 +  58131712 C
e saiBol1.JH378292             346406 0 -   2682657 C
e calJac3.chr6              154515034 0 - 158406734 C
e macFas5.chr7              165639049 0 - 171882078 C

a score=182.000000
s hg38.chr15_KI270851v1_alt    184123 2 +    263054 aa
s nomLeu3.chr6               71008226 2 + 121039945 aa
i nomLeu3.chr6              C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116288916 134 + 116334831 I
e proCoq1.NW_012148396v1     13504825 108 +  16154928 I
e dasNov3.JH562051             421797 0 +    563711 C
e canFam3.chr3               60034297 0 -  91889043 C
e aotNan1.NW_018503298v1       434074 0 +   3831555 C
e otoGar3.GL873689             459248 0 +   3845361 C
e cebCap1.NW_016107707v1       370661 4 -   2086007 I
e panPan2.chr15              74100486 0 -  99763055 C
e panTro5.chr15              73797014 0 -  83230942 C
e gorGor5.CYUI01000141v1       149354 0 -    281578 C
e colAng1.NW_012115278v1       482168 0 -   4457520 C
e manLeu1.NW_012102332v1       503392 0 -   3636681 C
e cerAty1.NW_012001462v1       450562 0 +   4116138 C
e macNem1.NW_012011934v1       493499 0 +   2379783 C
e rheMac8.chr7              164318085 0 - 169600520 C
e chlSab2.chr26              53882576 0 +  58131712 C
e saiBol1.JH378292             346406 0 -   2682657 C
e calJac3.chr6              154515034 0 - 158406734 C
e macFas5.chr7              165639049 0 - 171882078 C

a score=4642.000000
s hg38.chr15_KI270851v1_alt    184125  6 +    263054 aaaaaa------------
s panTro5.chr15              73797014  3 -  83230942 ---aaa------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100486  4 -  99763055 --aaaa------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149354  4 -    281578 --aaaa------------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008228  6 + 121039945 aaaaaa------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318085  4 - 169600520 --aaaa------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639049  4 - 171882078 --aaaa------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493499  4 +   2379783 --aaaa------------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450562 16 +   4116138 --aaaaaaaaaaaaaaag
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882576  5 +  58131712 -aaaaa------------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503392  3 -   3636681 ---aaa------------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482168  4 -   4457520 --aaaa------------
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346406  4 -   2682657 --aaaa------------
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       434074  5 +   3831555 -aaaaa------------
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             459248  6 +   3845361 AGAGAG------------
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116288916 134 + 116334831 I
e proCoq1.NW_012148396v1     13504825 108 +  16154928 I
e dasNov3.JH562051             421797  0 +    563711 C
e canFam3.chr3               60034297  0 -  91889043 C
e cebCap1.NW_016107707v1       370661  4 -   2086007 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=30294.000000
s hg38.chr15_KI270851v1_alt    184131 4 +    263054 aaaa
s panTro5.chr15              73797017 4 -  83230942 ataa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100490 4 -  99763055 taaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149358 4 -    281578 taaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008234 4 + 121039945 aaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318089 4 - 169600520 aaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639053 4 - 171882078 aaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493503 4 +   2379783 aaaa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450578 4 +   4116138 aaaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882581 4 +  58131712 aaaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503395 4 -   3636681 aaaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482172 4 -   4457520 aaaa
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346410 4 -   2682657 aaaa
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       434079 4 +   3831555 aaaa
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             459254 4 +   3845361 TAAG
i otoGar3.GL873689          C 0 C 0
s dasNov3.JH562051             421797 4 +    563711 AAAA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116288916 134 + 116334831 I
e proCoq1.NW_012148396v1     13504825 108 +  16154928 I
e canFam3.chr3               60034297 0 -  91889043 C
e cebCap1.NW_016107707v1       370661 4 -   2086007 I
e calJac3.chr6              154515034 0 - 158406734 C

a score=12376.000000
s hg38.chr15_KI270851v1_alt    184135 1 +    263054 a
s panTro5.chr15              73797021 1 -  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100494 1 -  99763055 a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149362 1 -    281578 a
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008238 1 + 121039945 a
i nomLeu3.chr6              C 0 I 16
s rheMac8.chr7              164318093 1 - 169600520 a
i rheMac8.chr7              C 0 I 13
s macFas5.chr7              165639057 1 - 171882078 a
i macFas5.chr7              C 0 I 13
s macNem1.NW_012011934v1       493507 1 +   2379783 a
i macNem1.NW_012011934v1    C 0 I 13
s cerAty1.NW_012001462v1       450582 1 +   4116138 a
i cerAty1.NW_012001462v1    C 0 I 13
s chlSab2.chr26              53882585 1 +  58131712 a
i chlSab2.chr26             C 0 I 13
s manLeu1.NW_012102332v1       503399 1 -   3636681 a
i manLeu1.NW_012102332v1    C 0 I 13
s colAng1.NW_012115278v1       482176 1 -   4457520 a
i colAng1.NW_012115278v1    C 0 I 286
s saiBol1.JH378292             346414 1 -   2682657 a
i saiBol1.JH378292          C 0 I 3
s aotNan1.NW_018503298v1       434083 1 +   3831555 a
i aotNan1.NW_018503298v1    C 0 I 3
s otoGar3.GL873689             459258 1 +   3845361 A
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034297 1 -  91889043 A
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             421801 1 +    563711 A
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116288916 134 + 116334831 I
e proCoq1.NW_012148396v1     13504825 108 +  16154928 I
e cebCap1.NW_016107707v1       370661 4 -   2086007 I
e calJac3.chr6              154515034 0 - 158406734 C

a score=293789.000000
s hg38.chr15_KI270851v1_alt    184136 48 +    263054 GGAGAGGAGGATTCAACACA-GTTGATGATGACAAAAAAAAA----AATAATA
s panTro5.chr15              73797022 48 -  83230942 GGAGAGGAGGATTCAACACAGGCTGatgatgat-aaaataat----aataata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100495 48 -  99763055 GGAGAGGAGGATTCAACACA-GCTGatgatgataaaaataat----aataata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149363 48 -    281578 GGAGAGGGGGATTCAACACA-GCTGatgatgataaaaataat----aataata
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008255 45 + 121039945 GGAGAGGAGGATTCAACACA-GTTGATGATGATAAA---AAA----AATAATA
i nomLeu3.chr6              I 16 C 0
s rheMac8.chr7              164318107 50 - 169600520 GGAGAGGAGGATTCAACACA-G-TGATGATGATAAAAAAAAA-AAAAATAATA
i rheMac8.chr7              I 13 C 0
s macFas5.chr7              165639071 49 - 171882078 GGAGAGGAGGATTCAACACA-G-TGATGATGATAAAAAAAA--AATAATAATA
i macFas5.chr7              I 13 C 0
s macNem1.NW_012011934v1       493521 51 +   2379783 GGAGAGGAGGATTCAACACA-G-TGatgatgataaaaaaaaataataataata
i macNem1.NW_012011934v1    I 13 C 0
s cerAty1.NW_012001462v1       450596 51 +   4116138 GGAGAGGAGGATTCAACACA-G-TGATGATGATAAAAAAAAAAAATAATAATA
i cerAty1.NW_012001462v1    I 13 C 0
s chlSab2.chr26              53882599 50 +  58131712 GGAGAGGAGGATTCAACACA-G-TGATGATGATGAAAAAAAA-TAAAATAATA
i chlSab2.chr26             I 13 C 0
s manLeu1.NW_012102332v1       503413 49 -   3636681 GGAGAGGAGGATTCAACACA-G-TGatgatgataaaaaaata--ataataata
i manLeu1.NW_012102332v1    I 13 C 0
s colAng1.NW_012115278v1       482463 47 -   4457520 GGAGAGGAGGATTCAACACA-GTTGATGATGATTAAAAAAAA-----ATAATA
i colAng1.NW_012115278v1    I 286 C 0
s saiBol1.JH378292             346418 40 -   2682657 GGAGAGTAGGATTCAACACG-GTTGATGATGGTAAGA------------AATA
i saiBol1.JH378292          I 3 C 0
s cebCap1.NW_016107707v1       370665 40 -   2086007 GGAAAGTAGGATTCAACACA-GCTGAGGATGATGAGA------------AATA
i cebCap1.NW_016107707v1    I 4 C 0
s aotNan1.NW_018503298v1       434087 40 +   3831555 GGAGAGTAGGATTCAACACC-GTTGATGATGATCAGA------------AATA
i aotNan1.NW_018503298v1    I 3 C 0
s otoGar3.GL873689             459259 39 +   3845361 GAGGAAGAAGAATCAACGAG-GTTCTTTGTGACAAAAATG-------------
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034298 48 -  91889043 GGAGAAGAAGAATCAGCACA-GTTGTTGGTGAGTAAAAATAA----GATAGTG
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             421802 40 +    563711 GAGAAAGAAAAATCAGCACA-GTTGCTAAGAAAAAATAAGA------------
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116288916 134 + 116334831 I
e proCoq1.NW_012148396v1     13504825 108 +  16154928 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=187976.000000
s hg38.chr15_KI270851v1_alt    184184 22 +    263054 AGGATAGTGAGACTCAA-TCAGG----
s panTro5.chr15              73797070 22 -  83230942 aGGATAGTGAGACTCAA-TCAGG----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100543 22 -  99763055 aGGATAGTGAGACTCAA-TCAGG----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149411 22 -    281578 aGGATAGTGAGACTCAA-TCAGG----
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008300 22 + 121039945 AGGATAGTGAGACTCAA-TCAGG----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318157 22 - 169600520 AGGATAGTGAGACTCAA-TCCGG----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639120 22 - 171882078 AGGATAGTGAGACTCAA-TCCGG----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493572 22 +   2379783 aGGATAGTGAGACTCAA-TCCGG----
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450647 22 +   4116138 AAGATAGTGAGACTCAA-TCCGG----
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882649 22 +  58131712 AGGATAGTGAGACTCAA-TCCGG----
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503462 18 -   3636681 aGGAT----AGACTCAA-TCCGG----
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482510 22 -   4457520 AGGGTAGTGAGACTCAA-TCCGG----
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346458 23 -   2682657 AGGATAGGGAAACTGAACTCAGT----
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370705 23 -   2086007 AGGATAGGGAGACTGAACTCAGT----
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434127 23 +   3831555 AGGTTAGTGAGACTCAACTCAGT----
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13504933 22 +  16154928 AGGATAGTGAGACTCAG-CTAGT----
i proCoq1.NW_012148396v1    I 108 C 0
s otoGar3.GL873689             459298 22 +   3845361 AGTATAGGGAGACTCAG-CTGGT----
i otoGar3.GL873689          C 0 I 4
s canFam3.chr3               60034346 21 -  91889043 -AGATTAAGAGACTAAG-CCAAG----
i canFam3.chr3              C 0 I 4
s dasNov3.JH562051             421842 20 +    563711 ------ATGAGACTAAA-CCACTAAAT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116288916 134 + 116334831 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=856629.000000
s hg38.chr15_KI270851v1_alt    184206 68 +    263054 TAGAAACAGCTG-TGAGTGGTTGTCATTTGCCCTCATGGT-CTG-------TTGCTGCAGAGGAAGCTAAAAAGTGT
s panTro5.chr15              73797092 67 -  83230942 TAG-AACAGCTGTTGAGT-GTTGTCATTTGCCCTCATGGTCCTG-------TTGCTGCAGAGGAAGCT-AAAAGTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100565 68 -  99763055 TAGAAACAGCTG-TGAGTGGTTGTCATTTGCCCTCATGGT-CTG-------TTGCTGCAGAGGAAGCTAAAAAGTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149433 68 -    281578 TAGAAACAGCTG-TGAGTGGTTGTCATTTGCCCTCATGGT-CTG-------TTGCTGCAGAGGAAGCTAAAAAGTGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008322 58 + 121039945 TAGAAACAGCTG-----------TCATTTGCCCTCATGGT-CTG-------TTGCTGCAGAGGAAGCTAAAAAGTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318179 68 - 169600520 TAGAAACAGCTG-TGAGTGGCTGTCATTTGCCCTCATGGT-CTG-------TTGCTGCAGAGGAAGCTAAAAAGTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639142 68 - 171882078 TAGAAACAGCTG-TGAGTGGCTGTCATTTGCCCTCATGGT-CTG-------TTGCTGCAGAGGAAGCTAAAAAGTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493594 68 +   2379783 TAGAAACAGCTG-TGAGTGGCTGTCATTTGCCCTCATGGT-CTG-------TTGCTGCAGAGGAAGCTAAAAAGTGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450669 68 +   4116138 TAGAAACAGCTG-TGAGTGGCTGTCATTTGCCCTCATGGT-CTG-------TTGCTGCAGAGGAAGCTAAAAAGTGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882671 68 +  58131712 TAGAAACAGCTG-TGAGTGGCTGTCATTTGCCCTCATGGT-CTG-------TTGCTGCAGAGGAAGCTAAAAAGTGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503480 68 -   3636681 TAGAAACAGCTG-TGAGTGGCTGTCATTTGCCCTCATGGT-CTG-------TTGCTGCAGAGGAAGCTAAAAAGTGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482532 68 -   4457520 TAGAAACAGCTG-TGAGTGGCTGTCATTTGCCCTCATGGT-CTG-------TTGCTGCAGAGGAAGCTAAAAAGTGT
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346481 68 -   2682657 TGGAGTTAGCTG-TGAATGGCTGTCATTTGCCCTCATGGT-TCA-------TTGCTACAGAGGAAGCTAAAACGTGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370728 68 -   2086007 TAGGGGTAGCTG-TGAGTGGCTGTCATTTGCCCTCGTGGT-TTG-------TTGCTACAGAGGAAGCTAAAAAGTGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434150 68 +   3831555 TAGAGTTAGCTG-GGAGTGGCTGACATTTGCCCTCACGGT-TTG-------TTGCTACAGAGGAAGCTAAAAAGTGT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116289050 67 + 116334831 TAGAAATAGCTG-TGAGTGGCTTTCATTTGCTCTCATGGT-CTG--------GGCCGCAGAGGAAGCTAAAGAGTGT
i micMur3.chr9              I 134 I 249
s proCoq1.NW_012148396v1     13504955 67 +  16154928 TAGAAATAGCTG-TGAGTGGCTTTCATTTGCTCTCATGGT-CTA--------GGCTGCAAAGGAAGCTAAAGAGTGT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             459324 64 +   3845361 TAGAGACAGCTG-TGAGTGGCTGTCATCTGCTGTCAT-GT-CTG--------GGCCACAGAGGAAGCTAAGATGT--
i otoGar3.GL873689          I 4 C 0
s canFam3.chr3               60034371 75 -  91889043 TAGAAATAGCTG-TTAGTGGCTTTCATTTGCTCTCATGAC-CTGTGACATGTGACAGCCGGGGAAGCTAACAGGTGC
i canFam3.chr3              I 4 C 0
s dasNov3.JH562051             421862 64 +    563711 TTGAAGCACCTG-TGGGTAGCAATCAATT----TATTGAT-CTT-------TGGCCACAGAGGAAGCTAGCTAGTGT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=4793.000000
s hg38.chr15_KI270851v1_alt    184274 1 +    263054 -G
s panTro5.chr15              73797159 1 -  83230942 -G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100633 1 -  99763055 -G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149501 1 -    281578 -G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008380 1 + 121039945 -G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318247 1 - 169600520 -G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639210 1 - 171882078 -G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493662 1 +   2379783 -G
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450737 1 +   4116138 -G
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882739 1 +  58131712 -G
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503548 1 -   3636681 -G
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482600 1 -   4457520 -G
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346549 1 -   2682657 -G
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370796 1 -   2086007 -G
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434218 1 +   3831555 -G
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13505022 1 +  16154928 -G
i proCoq1.NW_012148396v1    C 0 I 250
s otoGar3.GL873689             459388 1 +   3845361 -G
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034446 1 -  91889043 -A
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             421926 1 +    563711 T-
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116289117 249 + 116334831 I
e calJac3.chr6              154515034 0 - 158406734 C

a score=72242.000000
s hg38.chr15_KI270851v1_alt    184275 15 +    263054 CAGGAATGTCT-A---CCC
s panTro5.chr15              73797160 16 -  83230942 CAGGAATGCATCA---CCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100634 15 -  99763055 CAGGAATGTCC-A---CCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149502 15 -    281578 CAGGAATGTCT-A---CCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008381 15 + 121039945 CAGGAATGTCT-A---CCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318248 15 - 169600520 CAGGAATGTCT-A---CCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639211 15 - 171882078 CAGGAATGTCT-A---CCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493663 15 +   2379783 CAGGAATGTCT-A---CCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450738 15 +   4116138 CAGGAATGTGT-A---CCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882740 15 +  58131712 CAGGAATGTCT-A---CCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503549 15 -   3636681 CAGGAATGTGT-A---CCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482601 15 -   4457520 CGGGAATGTCT-A---CCC
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346550 12 -   2682657 TGGGAATATCT-A------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370797 12 -   2086007 CGGGAATATCC-A------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434219 15 +   3831555 CAGGAATATCT-AGCC---
i aotNan1.NW_018503298v1    C 0 I 43
s otoGar3.GL873689             459389 15 +   3845361 CAGGAAGGTCT-C---AGC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034447  9 -  91889043 TTGGAAGAT----------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             421927 15 +    563711 CAAGAGTGACA-G---TCC
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116289117 249 + 116334831 I
e proCoq1.NW_012148396v1     13505023 250 +  16154928 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=110017.000000
s hg38.chr15_KI270851v1_alt    184290 20 +    263054 GTCTGCCC-TTGG-TGGTCTCA------
s panTro5.chr15              73797176 20 -  83230942 GTCTACCC-GTGG-TGGTCTCA------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100649 21 -  99763055 GTCTACCCTGTGG-TGGTCTCA------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149517 21 -    281578 GTCTACCTTGTGG-TGGTCTCA------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008396 21 + 121039945 ATCTACCCTGTGG-TGATCTCA------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318263 21 - 169600520 GTCTACCCTGTGG-TGGTCTCA------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639226 21 - 171882078 GTCTACCCTGTGG-TGGTCTCA------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493678 21 +   2379783 GTCTACCCTGTGG-TGGTCTCA------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450753 21 +   4116138 GTCTACCCTGTGG-TGGTCTCA------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882755 21 +  58131712 GTCTACCCTGTGG-TGGCCTCA------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503564 21 -   3636681 GTCTACCCTGTGG-TGGTCTCA------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482616 21 -   4457520 GTCTACCCTGTGG-TGGTCTCA------
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346562 16 -   2682657 -----GCCTGTGG-TGGCCTCA------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370809 16 -   2086007 -----GCCTGTGG-TGGCCTCC------
i cebCap1.NW_016107707v1    C 0 C 0
s otoGar3.GL873689             459404 13 +   3845361 ----GCCATG-----AGTCTCG------
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034456 19 -  91889043 -TGTGCTATGT-G-TGCTCTGA------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             421942 20 +    563711 --------TGCAGCCAGGCTCATTCTGC
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116289117 249 + 116334831 I
e proCoq1.NW_012148396v1     13505023 250 +  16154928 I
e aotNan1.NW_018503298v1       434234 43 +   3831555 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=151683.000000
s hg38.chr15_KI270851v1_alt    184310 19 +    263054 CGTA-TTGCAGCCTCTGCCT
s panTro5.chr15              73797196 19 -  83230942 TGTA-TTGCAGCTCTTGCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100670 19 -  99763055 CATA-TTGCAGCCTCTGCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149538 19 -    281578 CATA-TTGCAGCCTCTGCCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008417 19 + 121039945 CGTA-CTGCAGCCTCTGCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318284 19 - 169600520 CATG-TTGCAGCCTCTGCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639247 19 - 171882078 CATG-TTGCAGCCTCTGCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493699 19 +   2379783 CATG-TTGCAGCCTCTGCCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450774 20 +   4116138 CATATTTGCAGCCTCTGCCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882776 19 +  58131712 CATG-TCGCAGCCTCTGCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503585 20 -   3636681 CATATTTGCAGCCTCTGCCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482637 19 -   4457520 CATA-TTGCAGCCTCTGCCC
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346578 19 -   2682657 CATG-TTACAGCCCCTGCCC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370825 19 -   2086007 CACG-TTACAGCCTCTGCCC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434277 19 +   3831555 CATG-TTACAGCCTCTGCCT
i aotNan1.NW_018503298v1    I 43 C 0
s otoGar3.GL873689             459417 19 +   3845361 CTTA-CCACATCCTCTCACA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034475 18 -  91889043 -CTT-TTGCTTCCTGTGACA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             421962 19 +    563711 CAGG-TTTCAACATCAACTC
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116289117 249 + 116334831 I
e proCoq1.NW_012148396v1     13505023 250 +  16154928 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=619646.000000
s hg38.chr15_KI270851v1_alt    184329 53 +    263054 GATGGGCCCAGCATGGCTTTTGTCTCCCTGCATGCCCAGAAATTGCACAGAAT
s panTro5.chr15              73797215 50 -  83230942 GATGGG-CCAGCCAGGCTTTTGTCTCCCTG-ATG-CCAGAAATTGCACAGAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100689 53 -  99763055 GATGGGCCCAGCATGGCTTTTGTCTCCCTGCATGCCCAGAAATTGCACAGAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149557 53 -    281578 GATGGGCCCAGCATGGCTTTTGTCTCCCTGCATGCCCAGAAATTGCACAGAAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008436 53 + 121039945 GATGGGCCCAGCATGGCTTTTGTCTCCCTGCATGCCCAGAAATTGCACAGAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318303 53 - 169600520 GATGGGCGCAGCATGGCTTTTGTCTCCCTACATGCCCAGAAGTTGCACAGAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639266 53 - 171882078 GATGGGCGCAGCATGGCTTTTGTCTCCCTACATGCCCAGAAGTTGCACAGAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493718 53 +   2379783 GATGGGCGCAGCGTGGCTTTTGTCTCCCTACATGCCCAGAAGTTGCACAGAAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450794 53 +   4116138 GATGGGCGCAGCATGGCTTTTGTCTCCCTACATGCCCAGAAGTTGCACAGAAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882795 53 +  58131712 GATGGGCGCAGCGTGGCTTTTGTCTCCCCACATGCCCAGAAGTTGCACAGAAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503605 53 -   3636681 GATGGGCGCAGCATGGCTTTTGTCTCCCTACATGCCCAGAAGTTGCACAGAAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482656 53 -   4457520 GATGGGCGCAGCATGGCTTTTGTCTGCCTACATGCCCAGAAATTGCACAGGAT
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346597 53 -   2682657 GTCAGACCCAGCATGGCTTTCGTCTCCCTGCACGCCCACAAATTGCACAGAAT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370844 53 -   2086007 ATTGGGCCCAGCATGGCTTTCGTCTCCCTGCACGCCCACAAATTGCACAGAAT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434296 53 +   3831555 GATGGGCCCAGCATGGCTTTTGTCTCCCTGCACGCCCACAAATTGCACAGAAT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116289366 53 + 116334831 GATGGGCTTAGCATGGCTGTCATCTTCCTGCGTGCCCAGAAGTTGCACAGAAT
i micMur3.chr9              I 249 I 50
s proCoq1.NW_012148396v1     13505273 53 +  16154928 GATGGGCCCAGCATGGCTGTCATCTTCCTGCGTGCCCAGAAGTTGCACAGAAT
i proCoq1.NW_012148396v1    I 250 C 0
s otoGar3.GL873689             459436 53 +   3845361 GATGGACCCAGGGTGGCCGTCGTCTTCCTGTGTGCCCGGAATTTGCACAGAAT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034493 34 -  91889043 GATGGGCTTAACTGGGCTGTCGTTTCTATGTGAT-------------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             421981 43 +    563711 ---------AGTGTGCCTGT-GCCTCTCTGCACCTCCAGAAATCATCCCTAAT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=28198.000000
s hg38.chr15_KI270851v1_alt    184382 2 +    263054 GT
s panTro5.chr15              73797265 2 -  83230942 GT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100742 2 -  99763055 GT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149610 2 -    281578 GT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008489 2 + 121039945 GT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318356 2 - 169600520 GT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639319 2 - 171882078 GT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493771 2 +   2379783 GT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450847 2 +   4116138 GT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882848 2 +  58131712 GT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503658 2 -   3636681 GT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482709 2 -   4457520 GT
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346650 2 -   2682657 GT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370897 2 -   2086007 GT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434349 2 +   3831555 GT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13505326 2 +  16154928 GT
i proCoq1.NW_012148396v1    C 0 I 57
s otoGar3.GL873689             459489 2 +   3845361 GT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034527 2 -  91889043 AT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             422024 2 +    563711 AT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116289419 50 + 116334831 I
e calJac3.chr6              154515034 0 - 158406734 C

a score=475403.000000
s hg38.chr15_KI270851v1_alt    184384 64 +    263054 GGATCAGCT-GTCCT----CTCA-GGGAAGAGCA-TACTATTTGAGCAC---TGCGTTTT--------------TACCAGACCAGGCT
s panTro5.chr15              73797267 65 -  83230942 GGATTCGCTAGTCCT----CTCA-GGCGAACGCATTACTA-CTGAGGAC---TGTGTTTT--------------TACCAGACAAGGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100744 64 -  99763055 GGATTAGCT-GTCCT----CTCA-GGGAACAGCA-TTCTACTTGAGGAC---TGTGTTTT--------------TACCAGACCAGGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149612 64 -    281578 GGATTAGCT-GTCCT----CTCA-GGGAACAGCA-TTCTACTTGAGGGC---TGTGTTTT--------------TACCAGACCAGGCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008491 64 + 121039945 GGATCAGCT-GTCCT----CTCA-GGGAACAGCA-TTCTATTTGAGGAC---TGCGTTTT--------------TACCAGACCAGGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318358 64 - 169600520 GGATCAGCT-GTCCT----CTCA-GGGGACAGCA-TTCTATTTGAGGAC---TGCGTTTT--------------TACCAGACCAGGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639321 64 - 171882078 GGATCAGCT-GTCCT----CTCA-GGGGACAGCA-TTCTATTTGAGGAC---TGCGTTTT--------------TACCAGACCAGGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493773 64 +   2379783 GGATCAGCT-GTCCT----CTCA-GGGGACAGCA-TTCTATTTGAGGAC---TGCGTTTT--------------TACCAGACCAGGCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450849 64 +   4116138 GGATCAGCT-GTCCT----CTCA-GGGGACAGCA-TTCTATTTGAGGAC---TGCGTTTT--------------TACCAGACCAGGCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882850 64 +  58131712 GGATCGGCT-GTCCT----CTCA-GGGGTCAGCA-TTCTATTTGAGGAC---TGCGTTTC--------------TACCAGACCAGGCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503660 64 -   3636681 GGATCAGCT-GTCCT----CTCA-GGGGACAGCA-TTCTATTTGAGGAC---TGTGTTTT--------------TACAAGACCAGGCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482711 62 -   4457520 GGATCAGCT-GCCCT----CTT---GGGACAGCA-TTCTATTTGAGGAC---TGCGTTTT--------------TACCAGACCAGGCT
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346652 54 -   2682657 GGATCAGCC-ATCCT----GTCG-GGGAACAGCA-TCCTATTTGAGGAC---TGTGTTTT--------------TACC----------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370899 54 -   2086007 GCATCAGCC-ATCCT----GTCA-GGGAACAGCA-TCCTATTTGAGGAC---TGTGTTTT--------------TACC----------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434351 58 +   3831555 GGATCAGCC-ATCCTACCAACCA-GGGAACAGCA-TCCTATTTGAGGTC---TTTGTTTT--------------TACC----------
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             459491 47 +   3845361 -GGTTGGCT-GTTCC----TACAGGGGAATAGCA-TTCTGCTTGAGAGCAAATG----------------------------------
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034529 59 -  91889043 GGATTGGTT-ATTTC----TGTT-GGTAATGGCA-TTCTGTTTTAGAAT---TGTGTTTT--------------TACTAGACT-----
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             422026 76 +    563711 GGGTCGTCT-TTTCT----TATC-AGGGAGAGCC-TTCTGTTTGAGGAC---TGTTTTTTTTTAACAGACTTTGTACCAAATAAAT--
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116289419 50 + 116334831 I
e proCoq1.NW_012148396v1     13505328 57 +  16154928 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=65095.000000
s hg38.chr15_KI270851v1_alt    184448 9 +    263054 CAAGGCAGT
s panTro5.chr15              73797332 9 -  83230942 CAAGTCAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100808 9 -  99763055 CAAGTCAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149676 9 -    281578 CAAGTCAGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008555 9 + 121039945 CAAGTCAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318422 9 - 169600520 CAAGTCACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639385 9 - 171882078 CAAGTCACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493837 9 +   2379783 CAAGTCACC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450913 9 +   4116138 CAAGTCACT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882914 9 +  58131712 CAAGTCACT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503724 9 -   3636681 CAAGTCACT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482773 9 -   4457520 CAAGTCACT
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346706 7 -   2682657 --AGTCAGC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370953 7 -   2086007 --AGTCAGC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434409 7 +   3831555 --AGTTAGC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116289469 9 + 116334831 CAAGTCAGT
i micMur3.chr9              I 50 C 0
s otoGar3.GL873689             459538 9 +   3845361 CAAGGCAGG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034588 4 -  91889043 CAAA-----
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             422102 9 +    563711 TAGAGCAAT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e proCoq1.NW_012148396v1     13505328 57 +  16154928 I
e calJac3.chr6              154515034 0 - 158406734 C

a score=446117.000000
s hg38.chr15_KI270851v1_alt    184457 41 +    263054 TATATTTCAGGATGGCAGCCTTTGTAACCACCTAAAATAAT
s panTro5.chr15              73797341 37 -  83230942 T-TATTTCAGGATGGCAGCCTTTGTAA-CACCT-AAATAA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100817 41 -  99763055 TATATTTCAGGATGGCAGCCTTTGTAACCACCTAAAATAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149685 41 -    281578 TATATTTCAGGATGGCAGCCTTTGTAACCACCTAAAATAAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008564 41 + 121039945 TATATTTCAGGATGGCAGCCTTTGTAACCACCTAAAATAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318431 41 - 169600520 TATATTTCAGGGTGGCAACCTTTGTAACCACCTAAAATAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639394 41 - 171882078 TATATTTCAGGGTGGCAACCTTTGTAACCACCTAAAATAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493846 41 +   2379783 TATATTTCAGGGTGGCAACCTTTGTAACCACCTAAAATAAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450922 41 +   4116138 TATATTTCAGGATGGCAACCTTTGTAACCACCTAAAATAAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882923 41 +  58131712 TATATTTCAGGATGGCAACCTTTGTAACCACCTAAAATAAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503733 41 -   3636681 TATATTTCAGGATGGCAACCTTTGTAACCACCTAAAATAAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482782 41 -   4457520 TATATTTCAGGATGGCAACCTTTGTAACCACCTAAGATAAT
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346713 24 -   2682657 TCTATTTCCGGATGGCAGCCTTG-----------------T
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370960 24 -   2086007 TATATTTCCAGATGGCAGCCTTT-----------------T
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434416 41 +   3831555 TATATTTCGGGATGGCAGCCTTTGTAACTACCTAAAATAAT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116289478 41 + 116334831 TATATTTTGGAATGGCAACCTTTGTAATAACCTAAAATAAT
i micMur3.chr9              C 0 I 33
s proCoq1.NW_012148396v1     13505385 41 +  16154928 TATATTTTGGAATGGCAGCCTTTGTAATCACCTAAAATAAT
i proCoq1.NW_012148396v1    I 57 I 33
s otoGar3.GL873689             459547 41 +   3845361 TATATTTTGGAATGGCAGCTTTTGTAATCACTTACAATAAG
i otoGar3.GL873689          C 0 I 1
s canFam3.chr3               60034592 41 -  91889043 TACATTTTGGGATTGTAACCTTTTTAATCACCTTAAGTGAA
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             422111 33 +    563711 TGCAACT--------CAATCTTTGTTATCACCTAAAATTAT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=310539.000000
s hg38.chr15_KI270851v1_alt    184498 32 +    263054 --AAGCTTCTTTCTGTCTCCTAAGATGTGTTTCC
s panTro5.chr15              73797378 31 -  83230942 --AAGTTTC-TTCTGACTCCTAAGATGGGTTTAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100858 32 -  99763055 --AAGTTTCTTCCTGTCTCCTAAGATGGGTTTAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149726 32 -    281578 --AAGTTTCTTCCTGTCTCCTAAGATGGGTTTAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008605 31 + 121039945 --AAATTTCTTCCTGTTTCCT-AGATGGGTTGAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318472 32 - 169600520 --AAGTTTCTTCCTGTCTCCTAAGATGGGTTTAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639435 32 - 171882078 --AAGTTTCTTCCTGTCTCCTAAGATGGGTTTAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493887 32 +   2379783 --AAGTTTCTTCCTGTCTCCTAAGATGGGTTTAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450963 32 +   4116138 --AAGTTTCTTCCTGTCTCCTAAGATGGGTTTAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882964 32 +  58131712 --AAGTTTCTTCCTGTCTCCTAAGATGGGTTTAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503774 32 -   3636681 --AAGTTTCTTCCTGTCTCCTAAGATGGGTTTAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482823 32 -   4457520 --AAGTGTCTTCCTGTGTCCTAAGATGGGTTTAC
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346737 32 -   2682657 --AAGTTTCCTCCTGTGCCCTAAGATGGGTTTAC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       370984 32 -   2086007 --AAGTTTCTTCCTGTGTCCTAAGATGGGTTTAC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434457 32 +   3831555 --AAGTTTCTTCCTGTGTCCTAAGATGGGTTTAC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             459589 32 +   3845361 --AAGTTGTTCCATACCCTATAAGATGGATTTAA
i otoGar3.GL873689          I 1 C 0
s canFam3.chr3               60034634 26 -  91889043 --AAATTTCTCCAT-----TTAAGGTGGATTAA-
i canFam3.chr3              I 1 C 0
s dasNov3.JH562051             422144 34 +    563711 ACAAATTTCCCCATGTCCCATAAAATGGGTTTGA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116289519 33 + 116334831 I
e proCoq1.NW_012148396v1     13505426 33 +  16154928 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=504164.000000
s hg38.chr15_KI270851v1_alt    184530 39 +    263054 ATTTTCCTTCATGTAGTTGTGCATTTC-CCA----TCTGTCTGT
s panTro5.chr15              73797409 38 -  83230942 ATTTTCCTTCATATAG-TGTGCATGTT-CCA----TCTGTCTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74100890 39 -  99763055 ATTTTCCTTCATATAGTTGTGCATTTC-CCA----tctgtctgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149758 39 -    281578 ATTTTCCTTCATATAGTTGTGCATTTC-CCA----tctgtctgt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008636 43 + 121039945 ATTTTCCTTCATGTAGTTGTGCATTTC-CCAtctgtctgtctgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318504 39 - 169600520 ATTTTTCTTCATGTAGTTGTGCATTTC-CCA----TCTGTCTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639467 39 - 171882078 ATTTTTCTTCATGTAGTTGTGCATTTC-CCA----TCTGTCTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493919 39 +   2379783 ATTTTTCTTCATGTAGTTGTGCATTTC-CCA----TCTGTCTGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       450995 39 +   4116138 ATTTTTCTTCATGTAGTTGTGCATTTC-CCA----TCTGTCTGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53882996 43 +  58131712 ATTTTTCTTCACGTAGTTGTGCATTTC-CCAtctgtctgtctgt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503806 39 -   3636681 ATTTTTCTTCATGTAGTTGTACATTTC-CCA----TCTGTCTGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482855 39 -   4457520 ATTTTTCTTCATGTAGTTGTGCATTTC-CCA----TCTGTCTGT
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346769 39 -   2682657 ATTTTTCTTCATGTAGTTGCGCAGTTT-GCA----GCTGTCTGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371016 39 -   2086007 ATTTTTCTTCATGTAGTTGCGCATTTC-GCA----GCTGTCTGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434489 39 +   3831555 ATTTTTCTTCATGTAGTTGCGCATTTC-CCA----GCTGTCTGT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116289552 39 + 116334831 ATTTTTCTTCATATAGTTGTACATTTC-TCA----TCTGTCTGT
i micMur3.chr9              I 33 C 0
s proCoq1.NW_012148396v1     13505459 39 +  16154928 ATTTTTCTTCATGCAGTTGTACATTTC-TCA----TCTGTCTGT
i proCoq1.NW_012148396v1    I 33 I 640
s otoGar3.GL873689             459621 39 +   3845361 ATTTTTCTTCATGTAATTGCACATAGC-CCA----TCTGTCTGC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034660 32 -  91889043 AGTTCTCTTTGTGTATTTGTACATTTC-TCA----AT-------
i canFam3.chr3              C 0 I 3
s dasNov3.JH562051             422178 40 +    563711 ATTTTTCTTCATGTGTTTATATCTTTCTTCA----CCTGCTTGt
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=92943.000000
s hg38.chr15_KI270851v1_alt    184569 12 +    263054 CTGTCCATCCAT
s panTro5.chr15              73797447 12 -  83230942 CTGTCCGTCCGT
i panTro5.chr15             C 0 I 1
s panPan2.chr15              74100929 12 -  99763055 ctgtccgtccgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149797 12 -    281578 ctgtccgtccgt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008679 12 + 121039945 ctgtctgtccgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318543 11 - 169600520 CTAT-CGTCCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639506 12 - 171882078 CTATCCGTCCAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493958 12 +   2379783 CTATCCGTCCAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451034 12 +   4116138 CTATCCATCCAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883039 12 +  58131712 ctgtccgtcCAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503845 12 -   3636681 CTATCCGTCCAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482894 12 -   4457520 CTATCCGTCCGC
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346808 12 -   2682657 CTGTCCATGCCT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371055 12 -   2086007 CTGTCTGTGCCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434528 12 +   3831555 CTATCCGTGCCT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116289591 12 + 116334831 TTatccatccat
i micMur3.chr9              C 0 I 77
s otoGar3.GL873689             459660 12 +   3845361 TCATGTATTCGT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034695  8 -  91889043 CCAGCTAT----
i canFam3.chr3              I 3 C 0
s dasNov3.JH562051             422218 12 +    563711 ccatccatccat
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=75774.000000
s hg38.chr15_KI270851v1_alt    184581 10 +    263054 GTGAGC-AGCT----
s panTro5.chr15              73797460 10 -  83230942 GTGAGC-AGCT----
i panTro5.chr15             I 1 C 0
s panPan2.chr15              74100941 10 -  99763055 gtgAGC-AGCT----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149809 10 -    281578 gtgAGC-AGCT----
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008691 10 + 121039945 gtgAGC-AGCT----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318554 10 - 169600520 GTGAGC-AGCT----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639518 10 - 171882078 GTGAGC-AGCT----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493970 10 +   2379783 GTGAGC-AGCT----
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451046 10 +   4116138 GTGAAC-AGCT----
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883051 10 +  58131712 GTGAGC-AGCT----
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503857 10 -   3636681 GTGAGC-AGCT----
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482906 10 -   4457520 GTGAGC-AGCT----
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346820 10 -   2682657 GTGAGC-TGCT----
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371067 10 -   2086007 GTGAGC-TGCT----
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434540 10 +   3831555 GTGAGC-TGCT----
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             459672 10 +   3845361 CCAAGA-AGCA----
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034703 10 -  91889043 -TCAGCAAGTA----
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             422230 10 +    563711 ----cc-atccatcc
i dasNov3.JH562051          C 0 I 60
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116289603 77 + 116334831 I
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=87854.000000
s hg38.chr15_KI270851v1_alt    184591 8 +    263054 TCTGTTGA
s panTro5.chr15              73797470 8 -  83230942 TCTGTTGA
i panTro5.chr15             C 0 I 218
s panPan2.chr15              74100951 8 -  99763055 TCTGTTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149819 8 -    281578 TCTGTTGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008701 8 + 121039945 TCTGTTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318564 8 - 169600520 TCTGTTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639528 8 - 171882078 TCTGTTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493980 8 +   2379783 TCTGTTGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451056 8 +   4116138 TCTGTTGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883061 8 +  58131712 TCTGTTGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503867 8 -   3636681 TCTGTTGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482916 8 -   4457520 TCTGTTGA
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346830 8 -   2682657 TCTCTTGA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371077 8 -   2086007 TCTCTTGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434550 8 +   3831555 GCTCTTGA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             459682 8 +   3845361 TTTGTTGA
i otoGar3.GL873689          C 0 I 3
s canFam3.chr3               60034713 8 -  91889043 TCTGTTGA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116289603 77 + 116334831 I
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I
e dasNov3.JH562051             422240 60 +    563711 I
e calJac3.chr6              154515034 0 - 158406734 C

a score=31332.000000
s hg38.chr15_KI270851v1_alt    184599 22 +    263054 GCATTTGCCTGGTGCCGTTACC
s panPan2.chr15              74100959 22 -  99763055 ACAGTTGCCTGGTGCAGTTACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149827 17 -    281578 ACAGTTGCCCGGTGCAG-----
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008709 22 + 121039945 GCAGTTGCCTGGTGCAGTTACC
i nomLeu3.chr6              C 0 I 3
s rheMac8.chr7              164318572  8 - 169600520 GCAGTCGC--------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639536  8 - 171882078 GCAGTCGC--------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493988  8 +   2379783 GCAGTCGC--------------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451064  8 +   4116138 GCAGTCGC--------------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883069  8 +  58131712 GCAGTCGC--------------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503875  8 -   3636681 GCAGTCGC--------------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482924  8 -   4457520 GCAGTCGC--------------
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346838  8 -   2682657 GCAGTTGC--------------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371085  8 -   2086007 GCAGTTGC--------------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434558  8 +   3831555 GCAGTTGC--------------
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             459693  8 +   3845361 GTAGTTGT--------------
i otoGar3.GL873689          I 3 I 9
s canFam3.chr3               60034721  5 -  91889043 ---GTAAC--------------
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116289603 77 + 116334831 I
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I
e dasNov3.JH562051             422240 60 +    563711 I
e panTro5.chr15              73797478 218 -  83230942 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=517.000000
s hg38.chr15_KI270851v1_alt    184621 3 +    263054 ATA
s panPan2.chr15              74100981 3 -  99763055 ATG
i panPan2.chr15             C 0 C 0
s otoGar3.GL873689             459710 3 +   3845361 ATG
i otoGar3.GL873689          I 9 C 0
s canFam3.chr3               60034726 3 -  91889043 TTA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116289603 77 + 116334831 I
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I
e dasNov3.JH562051             422240 60 +    563711 I
e aotNan1.NW_018503298v1       434566 0 +   3831555 C
e cebCap1.NW_016107707v1       371093 0 -   2086007 C
e nomLeu3.chr6               71008731 3 + 121039945 I
e panTro5.chr15              73797478 218 -  83230942 I
e gorGor5.CYUI01000141v1       149844 0 -    281578 C
e colAng1.NW_012115278v1       482932 0 -   4457520 C
e manLeu1.NW_012102332v1       503883 0 -   3636681 C
e cerAty1.NW_012001462v1       451072 0 +   4116138 C
e macNem1.NW_012011934v1       493996 0 +   2379783 C
e rheMac8.chr7              164318580 0 - 169600520 C
e chlSab2.chr26              53883077 0 +  58131712 C
e saiBol1.JH378292             346846 0 -   2682657 C
e calJac3.chr6              154515034 0 - 158406734 C
e macFas5.chr7              165639544 0 - 171882078 C

a score=11672.000000
s hg38.chr15_KI270851v1_alt    184624 32 +    263054 CGAGGTGTTCAGGATACAGTGATAGATAGGAC
s panPan2.chr15              74100984 32 -  99763055 CGAGGTGTTCAGGTTGCAGTGATGGGTAGGAC
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               71008734 32 + 121039945 CAAGGTGTTCAGGATGCAGTGACGGATAGGAC
i nomLeu3.chr6              I 3 C 0
s otoGar3.GL873689             459713 32 +   3845361 CTGGGAGTTCAGGACACAGAGGCAGCCAGGAC
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116289603 77 + 116334831 I
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I
e dasNov3.JH562051             422240 60 +    563711 I
e canFam3.chr3               60034729  0 -  91889043 C
e aotNan1.NW_018503298v1       434566  0 +   3831555 C
e cebCap1.NW_016107707v1       371093  0 -   2086007 C
e panTro5.chr15              73797478 218 -  83230942 I
e gorGor5.CYUI01000141v1       149844  0 -    281578 C
e colAng1.NW_012115278v1       482932  0 -   4457520 C
e manLeu1.NW_012102332v1       503883  0 -   3636681 C
e cerAty1.NW_012001462v1       451072  0 +   4116138 C
e macNem1.NW_012011934v1       493996  0 +   2379783 C
e rheMac8.chr7              164318580  0 - 169600520 C
e chlSab2.chr26              53883077  0 +  58131712 C
e saiBol1.JH378292             346846  0 -   2682657 C
e calJac3.chr6              154515034  0 - 158406734 C
e macFas5.chr7              165639544  0 - 171882078 C

a score=26811.000000
s hg38.chr15_KI270851v1_alt    184656 24 +    263054 ACACCTCTGCTTTCTGGTGCCGTT--------
s panPan2.chr15              74101016 24 -  99763055 ACGCCTCTGCTTTCTGGTGCCATT--------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149844  2 -    281578 ----------------------TT--------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008766 24 + 121039945 ACGCCTGTGCTTTCAGCTGCTGCT--------
i nomLeu3.chr6              C 0 T 59
s rheMac8.chr7              164318580 11 - 169600520 -------------CTGGTGCAGTT--------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639544 11 - 171882078 -------------CTGGTGCAGTT--------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       493996 11 +   2379783 -------------CTGGTGCAGTT--------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451072 11 +   4116138 -------------CTGGTGCAGTT--------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883077 11 +  58131712 -------------CTGGTGCAGTT--------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503883 11 -   3636681 -------------CTGGTGCAGTT--------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482932 11 -   4457520 -------------CTGGTGCAGTT--------
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346846 11 -   2682657 -------------TTGGTGTGGTT--------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371093 11 -   2086007 -------------TTGGTGCGGTT--------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434566 11 +   3831555 -------------TTGGTGCGGTT--------
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             459745 24 +   3845361 GTGCCTCTGTCCACAGGTATTGTT--------
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034729  6 -  91889043 ------------------CGAGTT--------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             422300 19 +    563711 -------------gcattgctgtttgcaagtc
i dasNov3.JH562051          I 60 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116289603 77 + 116334831 I
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I
e panTro5.chr15              73797478 218 -  83230942 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=25926.000000
s hg38.chr15_KI270851v1_alt    184680 3 +    263054 ACC
s panPan2.chr15              74101040 3 -  99763055 ACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149846 3 -    281578 ACC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164318591 3 - 169600520 ACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639555 3 - 171882078 ACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       494007 3 +   2379783 ACC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451083 3 +   4116138 ACC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883088 3 +  58131712 ACC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503894 3 -   3636681 ACC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482943 3 -   4457520 ACC
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346857 2 -   2682657 -CC
i saiBol1.JH378292          C 0 I 1
s cebCap1.NW_016107707v1       371104 2 -   2086007 -CC
i cebCap1.NW_016107707v1    C 0 I 1
s aotNan1.NW_018503298v1       434577 2 +   3831555 -CC
i aotNan1.NW_018503298v1    C 0 I 1
s canFam3.chr3               60034735 3 -  91889043 ACC
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             422319 3 +    563711 acc
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116289603 77 + 116334831 I
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I
e otoGar3.GL873689             459769 0 +   3845361 C
e nomLeu3.chr6               71008790 59 + 121039945 T
e panTro5.chr15              73797478 218 -  83230942 I
e calJac3.chr6              154515034 0 - 158406734 C

a score=285943.000000
s hg38.chr15_KI270851v1_alt    184683 37 +    263054 ATGCGAGGTGTTCAGGATGC---AGTGATGG-GTAGGACAC
s panPan2.chr15              74101043 37 -  99763055 ATGCGAGGTGTTCAGGATGC---AGTGATAG-ATAGGACAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149849 37 -    281578 ATGCGAGGTGTTCAGGATGC---AGTGATGG-GTAGGACAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008731 37 + 121039945 ATGCAAGGTGTTCAGGATGC---AGTGACGG-ATAGGACAC
i nomLeu3.chr6              T 59 C 0
s rheMac8.chr7              164318594 37 - 169600520 ACGCTAGGTGTTTGGGATGC---AGGGATGG-ATGGGACAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639558 37 - 171882078 ACGCTAGGTGTTTGGGATGC---AGGGATGG-ATGGGACAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       494010 37 +   2379783 ACGCTAGGTGTTTGGGATGC---AGGGATGG-ATGGGACAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451086 37 +   4116138 ACgctaggtgtttgggatgc---agggatgg-ataggacac
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883091 37 +  58131712 ACgctaggtgtttgggatgc---agggatgg-ataggacac
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503897 37 -   3636681 ACgctaggtgtttgggatgc---agggatgg-ataggacac
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482946 37 -   4457520 ACGCTAGGTGTTCGGGGTGC---AGGGATGG-ATAGGACAC
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346860 37 -   2682657 ATCCTAGGTGTTCAGGATGC---AGGGACGG-TTAGGACAC
i saiBol1.JH378292          I 1 C 0
s cebCap1.NW_016107707v1       371107 37 -   2086007 Atgctaggtgttcaggatgc---agggacgg-ataggacac
i cebCap1.NW_016107707v1    I 1 C 0
s aotNan1.NW_018503298v1       434580 37 +   3831555 Atgctaggtgttcaggatgc---agggacgg-ataggacac
i aotNan1.NW_018503298v1    I 1 C 0
s canFam3.chr3               60034738 39 -  91889043 ATATGAGGTGCTCA--ATGCATTAGGCATGGAATTAAACAT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             422322 37 +    563711 ttgataggcatttggaattc---aaagatgg-ctaagacaa
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116289603 77 + 116334831 I
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I
e otoGar3.GL873689             459769  0 +   3845361 C
e panTro5.chr15              73797478 218 -  83230942 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=301617.000000
s hg38.chr15_KI270851v1_alt    184720 36 +    263054 GCCTCTGCTTTCAG-----CTGCT----GCTTGT----TGATGAGCCAC
s panPan2.chr15              74101080 36 -  99763055 ACCTCTGCTTTCAG-----CTGCT----TCTTGT----TGATGAGCCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149886 36 -    281578 GCCTCTGCTTTCAG-----CTGCT----TCTTGT----TGATGAGCCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008768 36 + 121039945 GCCTGTGCTTTCAG-----CTGCT----GCTTGT----TGATGAGCCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318631 36 - 169600520 GCCTCCACTTTCAG-----CTGCT----GCTTGT----TGATGAGCCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639595 36 - 171882078 GCCTCCACTTTCAG-----CTGCT----GCTTGT----TGATGAGCCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       494047 36 +   2379783 GCCTCCACTTTCAG-----CTGCT----GCTTGT----TGATGAGCCAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451123 36 +   4116138 gcctccactttcaG-----CTGCT----GCTTGT----TGATGAGCCAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883128 36 +  58131712 gcctccactttcaG-----CTGCT----GCTTGT----CGATGAGCCAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503934 36 -   3636681 gcctccactttcaG-----CTGCT----GCTTGT----TGATGAGCCAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       482983 36 -   4457520 GCCTCCACTTTCAG-----CTGCT----GCTTGT----TGATGAGCCAG
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346897 36 -   2682657 GCTTCTGCCTTCAG-----CTGCT----TCTTGC----GGATGAGCCAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371144 36 -   2086007 gcctccgccttcag-----ctgtt----tcttgt----ggatgaggcag
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434617 33 +   3831555 atctctgccttcaG-----CTGCT----TCTT-------GATGAGCCAG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116289680 40 + 116334831 gcctctgccttaag-----ctgctgctggtttga----tgatgagccgg
i micMur3.chr9              I 77 C 0
s otoGar3.GL873689             459769 17 +   3845361 ----------------------------GTTTGA----TGATGAGCCAG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034777 40 -  91889043 ATCTCTGCCTTTAG-----GTGCT----TTTTATGTGATGATGAGCCAG
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             422359 39 +    563711 --gcccgccttcatggtacctcct----atctga----tggtgagcaga
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I
e panTro5.chr15              73797478 218 -  83230942 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=1000626.000000
s hg38.chr15_KI270851v1_alt    184756 94 +    263054 CATTCTAAGCAGG-TCACATTAC----AAGGTGGTGAATGGTGAAATGGAGATGTTCATACATGG-TTCTG--GGAGAAGAAAG--GCTTCACA---TTGGCAGCAG
s panTro5.chr15              73797696 97 -  83230942 CATTCTAAGCAGGGTCACGTTAC----AAGGTG-TGAATGGTGAAATGGAGACGTTCATACGTGGTTTTTG--GGAGAAGAAAGGCGCTTCACA---CTGGCAGCAG
i panTro5.chr15             I 218 I 276
s panPan2.chr15              74101116 94 -  99763055 CATTCTAAGCAGG-TCACGTTAC----AAGGTGGTGAATGGTGAAATGGAGACGTTCATACGTGG-TTTTG--GGAGAAGAAAG--GCTTCACA---CTGGCAGCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       149922 94 -    281578 CATTCTAAGCAGG-TCACGTTAC----AAGGTGGTGAATGGTGAAATGGAGACGTTCATACGTGG-TTTTG--GGAGAAGAAAG--GCTTCACA---CTGGCAGCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008804 94 + 121039945 CATTCTAAGCAGG-TCACGTTGC----AAGGTGGTGAATGGTGAAATGGAGACGTTCATATGTGG-TTCTG--GGAGAAGAAAG--GCTTCACA---TTGGCAGCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318667 94 - 169600520 CATTCTAAGCAGG-TCACGTTAC----AGGGTGGTGAATGGTGAAATGGAGACATTCATACATGG-TTCTG--GGAGAAGAAAG--GCTTCACA---TTGGCAGCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639631 94 - 171882078 CATTCTAAGCAGG-TCACGTTAC----AGGGTGGTGAATGGTGAAATGGAGACATTCATACATGG-TTCTG--GGAGAAGAAAG--GCTTCACA---TTGGCAGCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       494083 94 +   2379783 CATTCTAAGCAGG-TCACGTTAC----AGGGTGGTGAATGGTGAAATGGAGACATTCATACATGG-TTCTG--GGAGAAGAAAG--GCTTCACA---TTGGCAGCAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451159 94 +   4116138 CATTCTAAGCAGG-TCACGTTAC----AGGGTGGTGAATGGTGAAATGGAGACATTCATACATGG-TTCTG--GGAGAAGAAAG--GCTTCACA---TTGGCAGCAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883164 94 +  58131712 CATTCTAAGCAGG-TCACGTTAC----AGGGTGGTGAATGGTGAAATGGAGACATTCATACATGG-TTCTG--GGAGAAGAAAG--GCTTCACA---TTGACAGCAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       503970 94 -   3636681 CATTCTAAGCTGG-TCACGTTAC----AGGGTGGTGAATGGTGAAATGGAGACATTCATACATGG-TTCTG--GGAGAAGAAAG--GCTTCACA---TTGGCAGCAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       483019 94 -   4457520 CATTCTAAGCAGG-TCACGTTAC----AGGGTGGTGAATGGTGAAATGGAGACATTCATACATGG-TTCTG--GGAGAAGAAAG--GCTTCATA---TTGGCAGTAG
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             346933 94 -   2682657 TGTTCTAAGCAGC-TCACGTTAC----AGGGTGGTCAGTGGTGAAATAGAGACTCTCATACGTGG-TTCTG--GAGGAAGAAAC--GCTTCACA---TTGGCATCAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371180 94 -   2086007 TGTTCTAAGCAGG-TCACGTTAC----GGGGTGGTGAATGGTGAAATAGAGACTTTCATACGTGG-TTCTG--GAGGAAGAAAG--GCTTCACA---TTGGCCGCAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434650 94 +   3831555 TGTTCTAAGGAGG-TCACGTTAC----GGGGTGGGGAATGGTGAAATAGGGACTTTCATACGTGG-TTCTG--GAGGAAGAAAG--GCTTCACA---TTGGCAGCAG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116289720 94 + 116334831 cattctaagcaga-tcaggatac----agggtggtaaatgatgaaatggggacactcataagtgg-ttctg--gggcaagaaag--gcTTCACA---GTGACAACAG
i micMur3.chr9              C 0 C 0
s otoGar3.GL873689             459786 87 +   3845361 GATGCTGAGCAGA-TGGAGATACATATATGGCTGTAAATGATG-----------TTCGTAAGTGG-TTTTC--GGGGAGGAAAG--GCTTTGCA---ATGGCAGCAA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034818 92 -  91889043 TATTATCA-TAGA-TCAGTACGC----AGTGTGGTAGAGGATAAAATGGAGACATTTATAACTGG-TTCTGATGGGGAGGAAAG-----CCACA---TCAGAGGTGG
i canFam3.chr3              I 1 I 5
s dasNov3.JH562051             422398 80 +    563711 cattatagtcaga-taaggacat----agtgtgataaatgtttaggtgga-------------gg-tgttg-----gaagaaaa--gcttccgaGAGTTGGCAGCA-
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=700470.000000
s hg38.chr15_KI270851v1_alt    184850 80 +    263054 TCCTGAAATTGCG----------------TGAGAGAGCATTCTGGGCAGAAAACACA---GGAGTGTCAAGGGCACTGCTGAGAGGAGCAGGGCTTTCC
s panPan2.chr15              74101210 80 -  99763055 TCCTGAAATTGCA----------------TGAGGGAGCATTCTGGGCAGAAAACACA---GGAGTGTCAAGGGCACTGCTGAGAGGAGCAGGGCTTTCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150016 80 -    281578 TCCTGAAATTGCG----------------TGAGGGAGCATTCTGGGCAGAAAACACA---GGAGTGTCAAGGGCAATGCTGAGAGGAGCAGGGCTTTCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008898 80 + 121039945 TCCTGAAATTGCG----------------TGAGGGAGCATTCTGGGCAGAAAATGCA---GGAGTGTCAAGGGCACTGCTGAGAGGAGCAGGGCTTTCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318761 80 - 169600520 TCCTGAAATTGCG----------------TGAGGGAGCATTCTGGACAGAAAACGCA---GGGGTGTCAAGGGCACTGCTGAGAGGAGCAGGGCTTTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639725 80 - 171882078 TCCTGAAATTGCG----------------TGAGGGAGCATTCTGGACAGAAAACGCA---GGGGTGTCAAGGGCACTGCTGAGAGGAGCAGGGCTTTCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       494177 80 +   2379783 TCCTGAAATTGCG----------------TGAGGGAGCATTCTGGACAGAAAACGCA---GGGGTGTCAAGGGCACTGCTGAGAGGAGCAGGGCTTTCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451253 80 +   4116138 TCCTGAAATTGCG----------------TGAGGGAGCATTCTGGACAGAAAACGCA---GGGGTGTCAAGGGCGCTGCTGAGAGGAGCAGGGCTTTCC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883258 79 +  58131712 TCCTGAAATTGCG----------------TGCGGGAGCATTCTGGA-AGAAAACGCA---GGGGTTTCAAGGGCACTGCTGAGAGGAGCAGGGCTTTCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       504064 80 -   3636681 TCCTGAAATTGCG----------------TGAGGGAGCATTCTGGACAGAAAACGCA---GGGGTGTCAAGGGCACTGCTGAGAGGAGCAGGGCTTTCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       483113 80 -   4457520 TCCTGAATTTGCG----------------TGAGGGAGCATTCTGGACAGAAAACGCA---GGGGTGTCAAGGGCACTGCTGAGAGGAGCAGGGCTTTCC
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             347027 80 -   2682657 TCCTGAAGTTGGG----------------TGAGGGGCCATTCTGGGCAGAAAATGCA---GGGGTGTGAAAGGCGCTGCTGAGAGGAGCAGGGCTCTCC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371274 80 -   2086007 TCCTGAAGTTGGG----------------TGAGGGGGCATTCTGGGCAGAAAATGCA---GGGGTGTGAAAGGCGCTGCTGAGAGGAGCAGGGCTTTCC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434744 80 +   3831555 TCCTGAAGTCGGG----------------TGAGGGGGCATTCTGGGCAGAAAATGCA---TGGGTGTGAAAGGCGCTGCTGAGAGGGGCAGGGCTTTCC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116289814 79 + 116334831 CCCTGGAACTGAG----------------TGTGAGAGCATTCTGGGCAG-AAACATG---GCAGTGTGAGGGGCACTGCTGAGAGGAGCAGGGGTTTCC
i micMur3.chr9              C 0 I 161
s otoGar3.GL873689             459873 71 +   3845361 CCCTGG-ATTGAG-----------------GTGTAGGTGTTCTGGGCAG-AACCTTG---GGGGTGTGAAGGGCACTGCTGGGAGCAGCAGGA------
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60034915 90 -  91889043 TCATGAAATTGGAGTCGCAGCAAACTGGCTGTATGAACCTTATGGGCAGAAA---CA---CGTGTGTGAGGGACATTGTTGAGAAAAGTGGGGCTT---
i canFam3.chr3              I 5 C 0
s dasNov3.JH562051             422478 39 +    563711 -----------AG----------------TGTCTGAGACTT-------GAAAATGAAATTGGAGTCCC---GACAC-----------------------
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I
e panTro5.chr15              73797793 276 -  83230942 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=531917.000000
s hg38.chr15_KI270851v1_alt    184930 81 +    263054 TGCTGCTTGCAGGAG-TGGGTGTG-GC--------AG-AGGCTTGC-AGGGAAGGAGGATCTTGGTGTCCATACAGCCCCCCGTT---GGGCGGAC
s panPan2.chr15              74101290 82 -  99763055 TGCTGCTTTCGAGAG-TGGGTGTC-GC--------AGAAGGCTTGC-AGGGAAGGAGGATCTTGGTGTCCACACAGCCCCCCGTT---GGGTGGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150096 82 -    281578 TGCTGCTTTCGAGAG-TGGGTGTG-GC--------AGAAGGCTTGC-GGGGAAGGAGGATCTTGGTGTCCACACAGCCCCCGGTT---GGGTGGAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71008978 81 + 121039945 TGCTGCTTGCAAGAG-TGGGTGTG-GC--------AG-AGGCTTGC-AGGGAAGGAGGATTTTGGTGTCCACACAGCCCCCCGTT---GGGTGGAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318841 82 - 169600520 TGCTGCTTGTGAGAG-TGGGTGTG-GC--------AGAAGGCTGGT-GGGGAAGGAGGATCTTGATGCCCACACAGCCCCCCGTT---GGGTGGAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639805 82 - 171882078 TGCTGCTTGTGAGAG-TGGGTGTG-GC--------AGAAGGCTGGT-GGGGAAGGAGGATCTTGATGCCCACACAGCCCCCCGTT---GGGTGGAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       494257 82 +   2379783 TGCTGCTTGTGAGAG-TGGGTGTG-GC--------AGAAGGCTGGT-GGGGAAGGAGGATCTTGATGCCCACACAGCCCCCCGTT---GGGTGGAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451333 82 +   4116138 TGCTGCTTGTGAGAG-TGGGTGTG-GC--------AGAAGGCTGGT-GGGGAAGGAGGATCTTGGTGCCCACACAGCCCCCCGTT---GGGTGGAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883337 82 +  58131712 TGCCGCTTGTGAGAG-TGGGTGTG-GC--------AGAAGGCTGGT-GGGGAAGGAAGATATTGGTGCCCACACAGCCCCCCGTT---GGGTGGAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       504144 82 -   3636681 TGCTGCTTGTGAGAG-TGGGTGTG-GC--------AGAAGGCTGGT-GGGGAAGGAGGATCTTGGTGCCCACACAGCCCCCCATT---GGGTGGAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       483193 82 -   4457520 TGCTGCTTGTGAGAG-TGGGTGTG-GC--------AGAAGGCTGGT-GGGGAAGGAGGATCTTGGTGCCCACACAGCCCCCCGTT---GGGTGGAC
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             347107 83 -   2682657 TGCTGGTCTTGCGAG-TGGGTGTG-GC--------AGAAGGCTGGTCGGGGACGGAAGATCTTGCTGCTTGCACAGCCCCGCATT---GGGCGGAC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371354 81 -   2086007 TGCCGCTCGTGAGAG-TGGGTGTG-GC--------GGAAGGCTGGTCGGGGAAGGA--ATCTTGGCGCTCACACAGCCCCTCATT---GGGCAGAC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434824 83 +   3831555 TGCTGCTCGTGAGAG-TGGATGTG-GC--------AGAAGGCTGGTCGGGGAAGGAAGATCTTGGCACCTACACGGCCCTGCATT---GGGCGGAC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             459944 51 +   3845361 ---------------------GTG-TC--------A-----------AGGGCAGGCTGGCCTCAGTG-CTGGACAGCCCCATGTG---CAGTGGGC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60035005 91 -  91889043 --CTAGTTATTCGTG-TATGTGTA-CCGTCAGGAGAGAAGGCTAGT-GGGCAGTGATAGCCATGGTACCTGGTCAGCTCAGCCTTCTGGAGCAAGC
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             422517 30 +    563711 -ACTGGGTGTGAGAGCTGTCTGTGAGC--------AGAA---------------------------------------------------------
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116289893 161 + 116334831 I
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I
e panTro5.chr15              73797793 276 -  83230942 I
e calJac3.chr6              154515034  0 - 158406734 C

a score=156156.000000
s hg38.chr15_KI270851v1_alt    185011 17 +    263054 CTTTGTGCA-GTGCTAGG
s panPan2.chr15              74101372 17 -  99763055 CTTTGTGCA-GTGCTAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150178 17 -    281578 CTTTGTGCA-GTGCTGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009059 17 + 121039945 CTTTGTGCA-GTGCTGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318923 17 - 169600520 CTTTGTGCA-GTGCTGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639887 17 - 171882078 CTTTGTGCA-GTGCTGGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       494339 17 +   2379783 CTTTGTGCA-GTGCTGGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451415 17 +   4116138 CTTTGTGCA-GTGCTGGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883419 17 +  58131712 CTTTGTGCA-GTGCTGGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       504226 17 -   3636681 CTTTGTGCA-GTGCTGGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       483275 17 -   4457520 CTTTGTGCA-GTGCTGGG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154515034 17 - 158406734 cTCTGTGCA-GTGCTGGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             347190 16 -   2682657 -TTTGTGCA-GTGCTGGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371435 17 -   2086007 CTTTGTGCA-GTGCTGGG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434907 17 +   3831555 CTTTGTGCA-GTGCTGGA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             459995 11 +   3845361 CCTTGGG-------TGCA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60035096 18 -  91889043 CTTGGTGTGCATGCTGGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             422547 16 +    563711 GCATGTG-A-GTGTGAGG
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56132602 117 + 145441459 I
e micMur3.chr9              116289893 161 + 116334831 I
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I
e panTro5.chr15              73797793 276 -  83230942 I

a score=875573.000000
s hg38.chr15_KI270851v1_alt    185028 101 +    263054 TGCTGGGCTGCCTGTGGTGCCCTCTGAGGTGTC------TGCTTCCTTCCCTCCTCCTCAAGGCTC---AT--TGC-----TTGCC---AGAAGATGGGCTTTGTTTAAATTGGCAAGGA
s panPan2.chr15              74101389 101 -  99763055 TGCTGGGCTGCCTGTGGTGCCCTCTGAGGTATC------TGCTTCCTTCCCTCCTCCTCAAGGCTC---AT--TGC-----TTGCC---AGAAGATGGGCTTTGTTTAAATTGGCAAGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150195 101 -    281578 TGCTGGGCTGCCTGTGGTGCCCTCTGAGGTATC------TGCTTCCTTCCCTCCTCCTCAAGGCTC---AT--TGC-----TTGCC---AGAAGATGGGCTTTGTTTAAATTGGCAAGGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009076 101 + 121039945 TGCTGGGCTGCCTGTGGTGCCCTCTGAGGTGCC------TGCTTCCCTCCCTCCTCTTCAAGGCTC---AT--TGC-----TTGCC---AGAAGACGGGCTTTGTTTAAATTGGCAAGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164318940 101 - 169600520 TGCTGGGCTGCCTGTGGTGCCCTCTGAGGTGGC------AGCTTCCCTCCCTCCTCCTCGAGGCTC---GT--TGC-----TTGCC---AGAAGATGAGCTTTGCTTAAATTGGCAAGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165639904 101 - 171882078 TGCTGGGCTGCCTGTGGTGCCCTCTGAGGTGGC------AGCTTCCCTCCCTCCTCCTCGAGGCTC---GT--TGC-----TTGCC---AGAAGATGAGCTTTGCTTAAATTGGCAAGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       494356 101 +   2379783 TGCTGGGCTGCCTGTGGTGCCCTCTGAGGTGGC------AGCTTCCCTCCCTCCTCTTCGAGGCTC---GT--TGC-----TTGCC---AGAAGATGAGCTTTGCTTAAATTGGCAAGGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451432 101 +   4116138 TGCTGGGCTGCCTGTGGTGCCCTCTGAGGTGGC------AGCTTCCCTCCCTCCTCCTTGAGGCTC---GT--TGC-----TTGCC---AGAAGATGGGCTTTGCTTAAATTGGCAAGGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883436 101 +  58131712 TGCTGGGCTGCCTGTGGTGCCCTCTGAGGTGGC------AGCTTCCCTCCCTCCTCCTCGAGGCTC---GT--TGC-----TTGCC---AGAAGATGGGCTTTGCTTAAATTGGCAAGGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       504243 101 -   3636681 TGCTGGGCTGCCTGTGGTGCCCTCTGAGGTGGC------AGCTTCCCTCCCTCCTCCTCGAGGCTC---GT--TGC-----TTGCC---AGAAGATGGGCTTTGCTTAAATTGGCAAGGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       483292 101 -   4457520 TGCTGGGCTGCCTGTGGTGCCCTCTGAGGTGGC------AGCTTCTCTCCTTCCTCCTCGAGGCTC---AT--TGC-----TTGCC---AGAAGATGGGCTTTGCTTAAATTGGCAAGGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154515051 100 - 158406734 TGCTGGGCTGCCTGTGGGGCCCTCTGAGGCAGG------TGCTTCCCTCACTCCTCCTTGAGGCTC---GT--TAC-----TTGCC---AG-AGATGGGCTTTGCTTAAATTGACAAGGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             347206  99 -   2682657 TGGTGGGCT-CCTGTGGGGCCCTCTGAGGCAGG------TGCTTCCCTCACTCCTCCTTGAGGCTT---GT--TGC-----TTGCC---AG-AGATGGGCTTTGCTTAAATTGGCAAGAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371452  99 -   2086007 TGGTGGGCT-TCTGTGGGGCCCTCTGAGGCAGG------TGCTTCCCTCACTCCTCCTTGAGGCTC---GT--TGC-----TTGCC---AG-AGATGGGCTTTGCTTAAATTGGCAAGTA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       434924  96 +   3831555 TGCTGGGCT----GTGGGGCCCTCTGAGTCAGG------TGCTTCCCTCACTCCTCCTTGAGGCTC---GT--TGC-----TTGCC---AC-AGATGGGCTTTGCTTAAATTGGCAAGGA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             460006  92 +   3845361 TGCTGGGCG--CTGTGTGGCCTTC--------C------TGCTGCCCACCTTCATTCTGGAGACGT---AC--TG-------TGCCTTGGGAAGACAGGCTTCACGTAGATTGGCAAGGA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56132719  99 + 145441459 TGCTAAGTTGCCTGTGAACTAGACTG-------------TATTACTTGTATTCCTCCCTGAAACTT---GT--CATACATAGTAAT---GGAGGATGAGTTTCACATAAGTCAGCAAAGG
i mm10.chr7                 I 117 C 0
s canFam3.chr3               60035114 106 -  91889043 ---TGTTCTGCTTGTAGAGCCTTTGGGGGTGGCGGGGAATGGACTCATCCTCTCCCTCAAAGACTT---GTAGTAC-----TGTGG---GGAAGATAGGCTTCTTCTAAATCAGCAAAGA
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             422563  60 +    563711 ---------------GGCATCACTGAGAGTAGC------AG-------------------AGATTTCAAGC--TGC-----TTACT---GGGGAAGGGGTATTGATGAGA----------
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116289893 161 + 116334831 I
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I
e panTro5.chr15              73797793 276 -  83230942 I

a score=635584.000000
s hg38.chr15_KI270851v1_alt    185129 68 +    263054 GGGCAGGGCTGGCGAGCTCCAGGG-------CAG--------AGGGTGCCATGGGC--CCTGGCAGGT--GGGTCCG---ATCCACAGGA
s panTro5.chr15              73798069 68 -  83230942 GGGCAGTGGTGGCGAGTTCC-GGG-------CAG--------AGGG-GCCATGGGCTGCCTGGCACGG--TGGTCCG---ATCCACAGGA
i panTro5.chr15             I 276 C 0
s panPan2.chr15              74101490 68 -  99763055 GGGCAGGGCTGGCGAGCTCCAGGG-------CAG--------AGGGTGCCATGGGC--CCTGGCAGGT--GGGTCCG---ATCCACAGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150296 68 -    281578 GGGCAGGGCTGGCGAGTTCCAGGG-------CAG--------AGGGTGCCATGGGC--CCTGGCAGGT--GGGTCCA---ATCCACAGGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009177 68 + 121039945 GGGCAGGGCTGGCGAGCTCCAGGG-------CAG--------AGGGTGCCATGGGC--CCTGGCAGGT--GAGTCCG---ATCTACAGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164319041 68 - 169600520 GGGCAGGGCTGGCGAGCTTCAGGG-------CAA--------AGGGTGCCATGGGC--CCTGGCAGGT--GGGTCCG---ATCCACAGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165640005 68 - 171882078 GGGCAGGGCTGGCGAGCTCCAGGG-------CAA--------AGGGTGCCATGGGC--CCTGGCAGGT--GGGTCCG---ATCCACAGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       494457 68 +   2379783 GGGCAGGGCTGGCGAGCTCCAGGG-------CAA--------AGGGTGCCATGGGC--CCTGGCAGGT--GGGTCCG---ATCCACAGGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451533 68 +   4116138 GGGCAGGGCTGGTGAGCTCCAGGG-------CAA--------AGGGTGCCATGGGC--CCTGGCAGGT--GGGTCCG---ATCCACAGGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883537 68 +  58131712 GGGCAGGGCTGGTGAGCTCCAGGG-------CAA--------AGGGTGCCATGGGC--CCTGGCAGGT--GGGTCCG---ATCCAGAGGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       504344 68 -   3636681 GGGCAGGGCTGGTGAGCTCCAGGG-------CAA--------AGGGTGCCATGGGC--CCTGGCAGGT--GGGTCCG---ATCCACAGGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       483393 68 -   4457520 GGGCAGGGCTGGCGAGCTCCAGGG-------CAA--------AGGGTGCCATGGGC--CCTGGCAGGT--GGGTCCG---ATCCACAGGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154515151 67 - 158406734 AGGCAGGGCTGGTGAGCTCCAGGG-------AAG--------AGGGTGCCATGGAC--CCTGGCAGGT--GGGT-CT---GTCCACAGGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             347305 68 -   2682657 GGGCAGGGCTGGTGAGCTCCAGGG-------CAG--------AGGGTGCCATGGGC--CCTGGCAGGT--GGGTGGT---ATCCGCAGGA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371551 68 -   2086007 GGGCAGGGCTGGTGAGCTCCAGGG-------CAG--------AGGGTGCCATGGGC--CCTGGCAGGT--GGATCTG---ATCCACAGGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       435020 68 +   3831555 GGGCAGGACTGGTGAGCTCCAGGG-------CAG--------AGGGTGCCATGGGC--CCTGGCAGGT--GGGTCTG---ATCCACAGGA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             460098 79 +   3845361 GGGTCCAACTGGAGAGCTCTAGGG-------TAGCAGGAACAGAGGTGGTGTAGGC--CTTCGTGGGG--AGGCATGGCCATCCACGGAG
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56132818 51 + 145441459 ---AGGAGCTTGAAGACTCTAGGG-------TTA--------GATGAATGAAAGGC--ACT-----------GTGCA---ATTCA-----
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60035221 77 -  91889043 GGTGGGAAATGAGAAGAGTCAGAGTAAAGAACAG--------AAGATGCTATGGGC--TCTAGTGAATGAGGGCCTA---ACCTACTCTA
i canFam3.chr3              I 1 I 2
s dasNov3.JH562051             422623 11 +    563711 -----------------------------------------------------GGC--TCAGGCAG------------------------
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116289893 161 + 116334831 I
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I

a score=577951.000000
s hg38.chr15_KI270851v1_alt    185197 54 +    263054 G--GATCAGAGGCTTATCTTGGAGCAGTAA---GGAGGGGCTG----TCC-TGTG-CTTAAAGAG
s panTro5.chr15              73798137 59 -  83230942 GATGTTCAGAGCTTTCTTTTGGAGCAGTAA-CAGGAAGGGCTGC---TCC-TGTG-CTTAAAGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74101558 54 -  99763055 G--GATCAGAGGCTTATCTTGGAGCAGTAA---GGAGGGGCTG----TCC-TGTG-CTTAAAGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150364 54 -    281578 G--GATCAGAGGCTTATCTTGGAGCAGTAA---GGAGGGGCTG----TCT-TGTG-CTTAAAGAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009245 52 + 121039945 G--GATCAGAGGCTTATCTTGGAGCAGTAA---GGAGGGGCTG----TCC-TGTG-CTTAA--AG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164319109 54 - 169600520 G--GATCAGAGGCTTATCTTGGAGCAGTAA---GGAGGGGCTG----TCC-TGTG-CTTAAAGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165640073 54 - 171882078 G--GATCAGAGGCTTATCTTGGAGCAGTAA---GGAGGGGCTG----TCC-TGTG-CTTAAAGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       494525 54 +   2379783 G--GATCAGAGGCTTATCTTGGAGCAGTAA---GGAGGGGCTG----TCC-TGTG-CTTAAAGAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451601 54 +   4116138 G--GATCAGAGGCTTATCTTGGAGCTGTAA---GGAGGGGCTG----TCC-TGTG-CTTAAAGAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883605 54 +  58131712 G--GATCACAGGCTTATCTTGGAGCAGTAA---GGAGGGGCTG----TCC-TGTG-CTTAAAGAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       504412 54 -   3636681 G--GATCAGAGGCTTATCTTGGAGCAGTAA---GGAGGGGCTG----TCC-TGTG-CTTAAAGAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       483461 47 -   4457520 G--GATCAGAGGCTTATCTTGGAGCAGTAA---GGAGGGGCTG----TCC-TGT--------GAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154515218 54 - 158406734 G--GATCAGAGGCTTATCTTGGAGCAGTAA---GGAGGGGCTG----TCC-TGTG-CCTAAAGAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             347373 54 -   2682657 G--GATCAGAGGCTTATCTTGGAGCAGTCA---GGAGGGGCTG----CCC-TGTG-GCTAAAGAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371619 52 -   2086007 G--GATCAGA--CTTATCTTGGAGCAGTAA---GGGGGGGCTG----TCC-TGTG-CCTAAAGAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       435088 54 +   3831555 G--GATCAGAGGCTTATCTTAGGGCAGTGA---GGAGGGGCTG----TCC-TGTG-CCTAAAGAG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116290054 55 + 116334831 G--GATCAGAAGCTTGTCTTTGAGCGATAA---GGAGGGGCTC----TCC-TGTGATTTAAATAG
i micMur3.chr9              I 161 C 0
s otoGar3.GL873689             460177 53 +   3845361 G--GATCAGAAGCACATCTTGGAGAGAGAA---AGAGGGGCAG----TGT-AGTGTTTTAAGT--
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56132869 57 + 145441459 ---GCTCAGAAGCTTGTCTTTGGGGGATAA---AAGGTGCTTGCTAATTC-TTTC-TATAGCACA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60035300 58 -  91889043 G--CATCAGAAGCCACCTTTAGAGCAGTATTTTTGAGTGATTA----GAA-AGAGTTTTAAATGT
i canFam3.chr3              I 2 C 0
s dasNov3.JH562051             422634 43 +    563711 ------CAGAGGCC--TCTGGGAG---------AGTGGAACTG----TCCTTGTC-CTCACACAG
i dasNov3.JH562051          C 0 I 112
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I

a score=236658.000000
s hg38.chr15_KI270851v1_alt    185251 25 +    263054 AGGGGGCCAGAGAGAGTCGGCATTG
s panTro5.chr15              73798196 22 -  83230942 AGGGGGCC-GAG-GAGTCGGCATT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74101612 25 -  99763055 AGGGGGCCAGAGAGAGTCGGCATTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150418 25 -    281578 AGGGGGCCAGAGAGAGTCGGCATTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009297 25 + 121039945 AGGGGGCCAGAGAGAGTCGGCATTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164319163 25 - 169600520 AGGGGGCCAGGGAGAGTCGGCACTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165640127 25 - 171882078 AGGGGGCCAGGGAGAGTCGGCACTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       494579 25 +   2379783 AGGGGGCCAGGGAGAGTCGGCACTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451655 25 +   4116138 AGGGGGCCAGGGAGAGTCGGCACTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883659 25 +  58131712 AGGGGGCCAGGGAGAGTCGGCACTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       504466 25 -   3636681 AGGGGGCCAGGGAGAGTCGGCACTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       483508 25 -   4457520 AAGGGGCCAGGGAGAGTCGGCACTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154515272 25 - 158406734 AGAGGGCCGGGGAGAGTCGGTGTTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             347427 25 -   2682657 AGAGGGCTGGGGAGAATCGGCGTCG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371671 25 -   2086007 AGAGGGCCGGGGAGAGTCGACGTTG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       435142 25 +   3831555 AGAGGGCCGGGGAGAGTCGGCATTG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116290109 24 + 116334831 AGAGAGCCAGGGAGAGTTGAGTCA-
i micMur3.chr9              C 0 C 0
s otoGar3.GL873689             460230 22 +   3845361 --GGAGTCGGGATGGGGCAGATCA-
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56132926 23 + 145441459 AGGTGATTAGGGCACCTCAGCTT--
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60035358 25 -  91889043 AGAGATCTAGGGAAGGTCATCATCA
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13505498 640 +  16154928 I
e dasNov3.JH562051             422677 112 +    563711 I

a score=1115304.000000
s hg38.chr15_KI270851v1_alt    185276 85 +    263054 GATTAGTGTTTCAGAAGAACG-AATGTGGTGTGTTGGGGAATGCTCCTGAGTGCTCTA-AAATCTAAAT-GTCCAGTAAAAGAACAC-T
s panTro5.chr15              73798218 83 -  83230942 -ATTA--GTTTCAGAAGAACGAAATGTGGTGAGGTTGTG-ATGCTCCTGAGTGCTCTG-AAAACTAAATGGTCCAGTAAAGAACGAC-T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74101637 85 -  99763055 GATTAGTGTTTCAGAAGAACG-AATGTGGTGGGTTGTGGAATGCTCCTGAGTGCTCTA-AAATCTAAAT-GTCCAGTAAAAGAACAC-T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150443 85 -    281578 GATTAGTGTTTCCGAAGAACG-AATGTGGTGGGTTGTGGAATGCTCCTGAGTGCTCTA-AAATCTAAAT-GTCCAGTAAAAGAACAC-T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009322 85 + 121039945 GATTAGTGTTTCAGAAGAATG-AATGTGGTGGGTGGGGGAATGCTCCTGAGTGCTCTA-AAATCTAAAT-GTCCAGTAAAAGAACAC-T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164319188 85 - 169600520 GATTTGTGTTTCAGAAGAACG-CATGTGGTGGGTTGGGGAATGATCCTGAGTGCTCTA-AAATCTTAAT-GTCCAGTAAAAGAACAC-T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165640152 85 - 171882078 GATTTGTGTTTCAGAAGAACG-CATGTGGTGGGTTGGGGAATGATCCTGAGTGCTCTA-AAATCTTAAT-GTCCAGTAAAAGAACAC-T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       494604 85 +   2379783 GATTTGTGTTTCAGAAGAACG-CATGTGGTGGGTTGGGCAATGATCCTGAGTGCTCTA-AAATCTTAAT-GTCCAGTAAAAGAACAC-T
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451680 86 +   4116138 GATTTGTGTTTCAGAAGAACG-CATGTGGTGGGTTGGGGAATGATCCTGAGTGCTCTA-AAATCTTAAT-GTCCAGTAAAAGAACACTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883684 86 +  58131712 GATTTGTGTTTCAGAAGAACG-CATGTGGTGGGTTGGGGAATGATCCTGAGTGCTCTA-AAATCTTAAT-GTCCAGTAAAAGAACACTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       504491 85 -   3636681 GATTTGTGTTTCAGAAGAACG-CATGTGGTGGGTTGGGGAATGATCCTGAGTGCTCTG-AAATCTTAAT-GTCCAGTAAAAGAACAC-T
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       483533 85 -   4457520 GATTTGTGTTTCAGAAGAATG-CATGTGGTGGGTTGGGGAATGATCCTGAGTGCTCTA-AAATCTAAGT-GTCCAGTAAAAGAACAC-T
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154515297 83 - 158406734 GATT--TGTTTCAGAAGAACA-AACGTGGTGGTTTGGGGAATGCTCCTGAGTGCTCTA-AAATCTCCAC-GACCAGTAAAAGAACTC-T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             347452 85 -   2682657 GATTTGTGTTTCAGAAGAACA-AATGTGGTGGTTTGGGGAATGCTCGTGAGTGCTCTA-AAATCTACAC-GTCCGGTAAAGGAACAC-T
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371696 85 -   2086007 GATTTGTTTTTCAGAAGAACA-AATGTGGTGATTTGGGGAATGCTCCTGAGTGCTCTA-AAATCTGCAC-GTCAGGTAAAAGAACAC-T
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       435167 85 +   3831555 GATTTGTGTTTCAGAAGAACA-AATGTGGTGGTTTGGGGAATGCTTCTGAGTGCTCTA-AAATCTACAC-GTCCAGTAAAAGAACAC-T
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116290133 85 + 116334831 GATTTGTGTTTTAGAAGAATT-AATGTGGTGGTTTAGGGAATGCTCCTGAGTGCTCTA-AAATCTAAAT-GTCCAGTAAAAGAACAC-T
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13506138 85 +  16154928 GATTCGTGTTTTAGAATAATT-AATGTGGTGGTTTAGGGAATGCTCCTGAATGCTCTA-AAATCTAAAT-GTCCAGTAAAAGAACAC-T
i proCoq1.NW_012148396v1    I 640 I 205
s otoGar3.GL873689             460252 85 +   3845361 GATTTGTGATTCAGAAGAATT--ATGCGGTGGTGTAGGGAATGTTCTCAAATGCTCTAGAAATCCAAAT-GTCCAGTAAAAGAACAC-T
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56132949 76 + 145441459 -----GTGTTTTAGAAGAATT-GATACAGCCATTTGTGAAA-GTTCCCTAGCACT-TC-AAATCTAGAT-ATCCAATAAGAGCACT---
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60035383 82 -  91889043 GATTTGTGTTTTAG---AATT-AATGTGGCACTTTGGAGAATGTTTGTGAATGCTCTA-ATCGCTAAAT-TTCCATTAAAAGAATGT-T
i canFam3.chr3              C 0 C 0
e dasNov3.JH562051             422677 112 +    563711 I

a score=121592.000000
s hg38.chr15_KI270851v1_alt    185361 8 +    263054 AAGTGCAT
s panTro5.chr15              73798301 8 -  83230942 AAGTGCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74101722 8 -  99763055 AAGTGCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150528 8 -    281578 AAGTGCAT
i gorGor5.CYUI01000141v1    C 0 I 1
s nomLeu3.chr6               71009407 8 + 121039945 AAGTGCAT
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7              164319273 8 - 169600520 AAGTGCAT
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              165640237 8 - 171882078 AAGTGCAT
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011934v1       494689 8 +   2379783 AAGTGCAT
i macNem1.NW_012011934v1    C 0 I 1
s cerAty1.NW_012001462v1       451766 8 +   4116138 AAGTGCAT
i cerAty1.NW_012001462v1    C 0 I 1
s chlSab2.chr26              53883770 8 +  58131712 AAGTGCAT
i chlSab2.chr26             C 0 I 1
s manLeu1.NW_012102332v1       504576 8 -   3636681 AAGTGCAT
i manLeu1.NW_012102332v1    C 0 I 1
s colAng1.NW_012115278v1       483618 8 -   4457520 AAGTGCAT
i colAng1.NW_012115278v1    C 0 I 1
s calJac3.chr6              154515380 8 - 158406734 AAGTGCGT
i calJac3.chr6              C 0 I 1
s saiBol1.JH378292             347537 8 -   2682657 AAGTGCAT
i saiBol1.JH378292          C 0 I 1
s cebCap1.NW_016107707v1       371781 8 -   2086007 AAGTGCAT
i cebCap1.NW_016107707v1    C 0 I 1
s aotNan1.NW_018503298v1       435252 8 +   3831555 AAGTGCAT
i aotNan1.NW_018503298v1    C 0 I 1
s micMur3.chr9              116290218 8 + 116334831 AAGTACAT
i micMur3.chr9              C 0 I 220
s otoGar3.GL873689             460337 8 +   3845361 GAGTGCGT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56133025 8 + 145441459 GAAAGCAT
i mm10.chr7                 C 0 I 1
s canFam3.chr3               60035465 8 -  91889043 GAGTACAT
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13506223 205 +  16154928 I
e dasNov3.JH562051             422677 112 +    563711 I

a score=351201.000000
s hg38.chr15_KI270851v1_alt    185369 39 +    263054 -CCCGC-TTT-GATTGCT--TGGAT----------TT-GGAGCAGTAT-TTG-AT--AA
s panTro5.chr15              73798309 42 -  83230942 -CCCGC-TTTGGATTGCTTGTGGAT----------TT-GGAGCAGTAT-TTG-AT--AA
i panTro5.chr15             C 0 I 120
s panPan2.chr15              74101730 39 -  99763055 -CCCGC-TTT-GATTGCT--TGGAT----------TT-GGAGCAGTAT-TTG-AT--AA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150537 39 -    281578 -CCCGC-TTT-GATTGCT--TGGAT----------TT-GGAGCGGTAT-TTG-AT--AA
i gorGor5.CYUI01000141v1    I 1 C 0
s nomLeu3.chr6               71009416 39 + 121039945 -CCCGC-TTT-GATTGCT--TGGAT----------TT-GGAGCAGTAT-TTG-AT--AA
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr7              164319282 39 - 169600520 -CCCAC-TTT-GATGGCT--TGGAT----------TT-GGAGCAGTAT-TTG-AT--AA
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              165640246 39 - 171882078 -CCCAC-TTT-GATGGCT--TGGAT----------TT-GGAGCAGTAT-TTG-AT--AA
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011934v1       494698 39 +   2379783 -CCCAC-TTT-GATGGCT--TGGAT----------TT-GGAGCAGTAT-TTG-AT--AA
i macNem1.NW_012011934v1    I 1 C 0
s cerAty1.NW_012001462v1       451775 39 +   4116138 -CCCAC-TTT-GATGGCT--TGGAT----------TT-GGAGCAGTAT-TTG-AT--AA
i cerAty1.NW_012001462v1    I 1 C 0
s chlSab2.chr26              53883779 39 +  58131712 -CCCAC-TTT-GATGGCT--TGGAT----------TT-GGAGCAGTAT-TTG-AT--AA
i chlSab2.chr26             I 1 C 0
s manLeu1.NW_012102332v1       504585 39 -   3636681 -CCCAC-TTT-GATGGCT--TGGAT----------TT-GGAGCAGTAT-TTG-AT--AA
i manLeu1.NW_012102332v1    I 1 C 0
s colAng1.NW_012115278v1       483627 39 -   4457520 -CCCAC-TTT-GATGGCT--TGGAT----------TT-GGAGCAGTAT-TTG-AT--AA
i colAng1.NW_012115278v1    I 1 C 0
s calJac3.chr6              154515389 38 - 158406734 -CCTGC-TTT-GCTTGCT--TGGAT----------TT-GGATCAATAT-TTGTGA----
i calJac3.chr6              I 1 C 0
s saiBol1.JH378292             347546 37 -   2682657 -CCTGC-TTT-GGTTGCT--TGGAT----------TT-GGATCAGTAT-TTG-GT----
i saiBol1.JH378292          I 1 C 0
s cebCap1.NW_016107707v1       371790 37 -   2086007 -CCTGC-TTT-GGCTGCT--TGGAT----------TT-GGATCCATAT-TTG-GT----
i cebCap1.NW_016107707v1    I 1 C 0
s aotNan1.NW_018503298v1       435261 39 +   3831555 -CCTGC-TTT-GATTGCT--TGGAT----------TT-GGATCAATAT-TTG-GTAA--
i aotNan1.NW_018503298v1    I 1 C 0
s otoGar3.GL873689             460345 40 +   3845361 -CCCACATGT-GACTGCT--TGGGT----------TT--GAGCAACATGTCG-GC--AA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56133034 48 + 145441459 -CCAAA-TTT-GATTGCT--GGAGTGATTAGCAGATT-AGATTAG-AT-TTA-CT--AA
i mm10.chr7                 I 1 I 3
s canFam3.chr3               60035473 42 -  91889043 CCCAGA-TTT-AATTGCT--TGGGT----------TTTGGAGGATTATTTTG-AT--AG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116290226 220 + 116334831 I
e proCoq1.NW_012148396v1     13506223 205 +  16154928 I
e dasNov3.JH562051             422677 112 +    563711 I

a score=347178.000000
s hg38.chr15_KI270851v1_alt    185408 33 +    263054 CACAGATCGTTAATAGAGATCTGTAGTGGTGCA
s panPan2.chr15              74101769 33 -  99763055 CACAGATCGTTAATAGAGATCTGTAGTGGTGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150576 33 -    281578 CACAGATCATTAATAGATATCTGTAGTGGTGCA
i gorGor5.CYUI01000141v1    C 0 I 26
s nomLeu3.chr6               71009455 33 + 121039945 CACAGATCGTTAATAGAGATCTGTGGTGGTGCA
i nomLeu3.chr6              C 0 I 26
s rheMac8.chr7              164319321 33 - 169600520 CACAGATCGTTAATGGAGATCTGTAGTGGTGCA
i rheMac8.chr7              C 0 I 26
s macFas5.chr7              165640285 33 - 171882078 CACAGATCGTTAATGGAGATCTGTAGTGGTGCA
i macFas5.chr7              C 0 I 26
s macNem1.NW_012011934v1       494737 33 +   2379783 CACAGATCGTTAATGGAGATCTGTAGTGGTGCA
i macNem1.NW_012011934v1    C 0 I 26
s cerAty1.NW_012001462v1       451814 33 +   4116138 CACAGATCGTTAATGGAGATCTGTAGTGGTGCA
i cerAty1.NW_012001462v1    C 0 I 26
s chlSab2.chr26              53883818 33 +  58131712 CACAGATCGTTAATGGAGATCTGTAGTGGTGCA
i chlSab2.chr26             C 0 I 26
s manLeu1.NW_012102332v1       504624 33 -   3636681 CACAGATCGTTAATGGAGATCTGTAGTGGTGCA
i manLeu1.NW_012102332v1    C 0 I 26
s colAng1.NW_012115278v1       483666 33 -   4457520 CACAGATCGTTCACAGAGATCTGTAGTGGTGCA
i colAng1.NW_012115278v1    C 0 I 26
s calJac3.chr6              154515427 33 - 158406734 CACAGATCACTGATAGAGATCTGTAGTGGTGCA
i calJac3.chr6              C 0 I 108
s saiBol1.JH378292             347583 33 -   2682657 GACAGATCATTAATAGAGATGTGTAGTGGTGCA
i saiBol1.JH378292          C 0 I 28
s cebCap1.NW_016107707v1       371827 33 -   2086007 GACAGATCGTTAATACAGATGTGTAATGGTGCA
i cebCap1.NW_016107707v1    C 0 I 42
s aotNan1.NW_018503298v1       435300 33 +   3831555 CACAGATCATTAATAGAGATCTGTAGTGGTGCA
i aotNan1.NW_018503298v1    C 0 I 26
s otoGar3.GL873689             460385 33 +   3845361 CACAGCTCACTGATAAAAATCTATAGTGATGTG
i otoGar3.GL873689          C 0 I 22
s mm10.chr7                  56133085 33 + 145441459 ATTAGGTCCTCAGTGAAAGCCTGCAGTAATGTT
i mm10.chr7                 I 3 I 24
s canFam3.chr3               60035515 33 -  91889043 CACAGGTCATTGAAAAAGACTTGTAGCAATGTA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116290226 220 + 116334831 I
e proCoq1.NW_012148396v1     13506223 205 +  16154928 I
e dasNov3.JH562051             422677 112 +    563711 I
e panTro5.chr15              73798351 120 -  83230942 I

a score=430783.000000
s hg38.chr15_KI270851v1_alt    185441  60 +    263054 --------------------------------CTCCCTCAAGTTG-CCATAAGCAGTTGTAAT------TAACATTCGCA-------------------------------------CTGGTTGATCCCAT---GCCTT--------------
s panPan2.chr15              74101802  60 -  99763055 --------------------------------CTCCCTCAAGTTG-CCATAAGCAGTTGTAAT------TAACATTCGCA-------------------------------------CTGGTTGATCGCAT---GCTTT--------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150635  60 -    281578 --------------------------------CTCCCTCAAGTGA-CCATAAGCAGTTGTAAT------TAACATTCTCA-------------------------------------CTGGCTGATCTAGT---GTCTT--------------
i gorGor5.CYUI01000141v1    I 26 C 0
s nomLeu3.chr6               71009514  60 + 121039945 --------------------------------CTCCCTCGAGTGA-CCACAAGCAGTTGTAAT------TAACATTCACA-------------------------------------CTGGCCGATCCCAT---GCCTT--------------
i nomLeu3.chr6              I 26 C 0
s rheMac8.chr7              164319380  60 - 169600520 --------------------------------CTCCCTCAAGTTA-CCATAGGCAGTTGTAAT------TGGCATTTGCA-------------------------------------CTGGCTGATCCCAT---GCCTT--------------
i rheMac8.chr7              I 26 C 0
s macFas5.chr7              165640344  60 - 171882078 --------------------------------CTCCCTCAAGTTA-CCATAGGCAGTTGTAAT------TGGCATTTGCA-------------------------------------CTGGCTGATCCCAT---GCCTT--------------
i macFas5.chr7              I 26 C 0
s macNem1.NW_012011934v1       494796  60 +   2379783 --------------------------------CTCCCTCAAGTTA-CCATAGGCAGTTGTAAT------TGGCATTTGCA-------------------------------------CTGGCTGATCCCAT---GCCTT--------------
i macNem1.NW_012011934v1    I 26 C 0
s cerAty1.NW_012001462v1       451873  60 +   4116138 --------------------------------CTCCCTCAAGTTA-CCATAGGCAGTTGTAAT------TGACATTCGCA-------------------------------------CTGGCTGATCCCAT---GCCTT--------------
i cerAty1.NW_012001462v1    I 26 C 0
s chlSab2.chr26              53883877  60 +  58131712 --------------------------------CTCCCTCAAGTTA-CCATAGGCAGTTGTAAT------TGACATTCACA-------------------------------------CTGGCTGATCCCAT---GCCTT--------------
i chlSab2.chr26             I 26 C 0
s manLeu1.NW_012102332v1       504683  60 -   3636681 --------------------------------CTCCCTCAAGTTA-CCATAGGCAGTTGTAGT------TGACATTCACA-------------------------------------CTGGCTGATCCCAT---GCCTT--------------
i manLeu1.NW_012102332v1    I 26 C 0
s colAng1.NW_012115278v1       483725  60 -   4457520 --------------------------------CTCCCTCAAGTTA-CCGTAGGTAGTTGTAAT------CAGCATTCGCA-------------------------------------CTGGCTGATCCCAT---GCCTT--------------
i colAng1.NW_012115278v1    I 26 C 0
s calJac3.chr6              154515568  61 - 158406734 --------------------------------CTCTGTCCAGTTA-CCGTAAGCAGTTGTAAT------TAACATTCGCAG------------------------------------CTGGCTGATCTGGT---GCCTT--------------
i calJac3.chr6              I 108 C 0
s saiBol1.JH378292             347644  61 -   2682657 --------------------------------CGCCCTCCAGTCA-CCATAAGCAGCTGTAAT------TCACGTTTGCAG------------------------------------CTGGCTGATCTGGC---GCCTT--------------
i saiBol1.JH378292          I 28 C 0
s cebCap1.NW_016107707v1       371902  61 -   2086007 --------------------------------CGCCCTCCAGTTA-CCGTAAGCAGCTGTAAT------TCACGTTCACGG------------------------------------CTGGCTGATCTGGC---ACCTT--------------
i cebCap1.NW_016107707v1    I 42 C 0
s aotNan1.NW_018503298v1       435359  61 +   3831555 --------------------------------CTCCCTCCAGTTA-CCATAAGCAGTTGTAAT------TAACATTCGCAG------------------------------------CTGGCTGAACTGGT---GCCTT--------------
i aotNan1.NW_018503298v1    I 26 C 0
s otoGar3.GL873689             460440  77 +   3845361 --------------------------------TTTCCTCCATTTA-TCATCAGTAGTTGTCAT------TAACTTTCCCTG-----ACAGT----GGCATGT-------------TCTTGTCAGATCTGACTGAGCCT---------------
i otoGar3.GL873689          I 22 C 0
s mm10.chr7                  56133142  98 + 145441459 --------------------------------TTTCCTTCAGTGAGACATAAGCAGCTATAAT------TAATACTCCTAACTCCCACAACAAAAGGTATATATATTCCTGTCAGACTTACCTGATCCTGC---ATCTT--------------
i mm10.chr7                 I 24 I 7
s canFam3.chr3               60035548 111 -  91889043 CAAACTGACTTCACTTTTTTGATCAACCTTTCTTTACTCCAGTTA-TTATA-GCAGTTAGAATGAGCACTCATATTTGCA-------------------------------------CTGAGGGATAGCAT---GTTCTTAGAGTCTGGCCAT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116290226 220 + 116334831 I
e proCoq1.NW_012148396v1     13506223 205 +  16154928 I
e dasNov3.JH562051             422677 112 +    563711 I
e panTro5.chr15              73798351 120 -  83230942 I

a score=44170.000000
s hg38.chr15_KI270851v1_alt    185501 4 +    263054 GCAC
s panTro5.chr15              73798471 4 -  83230942 GCAC
i panTro5.chr15             I 120 C 0
s panPan2.chr15              74101862 4 -  99763055 GCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150695 4 -    281578 TCAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009574 4 + 121039945 GCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164319440 4 - 169600520 GCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165640404 4 - 171882078 GCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       494856 4 +   2379783 GCAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451933 4 +   4116138 GCAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883937 4 +  58131712 GCGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       504743 4 -   3636681 GCAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       483785 4 -   4457520 GCAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154515629 4 - 158406734 GCAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             347705 4 -   2682657 GCAC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371963 4 -   2086007 ACAC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       435420 4 +   3831555 GCAC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             460517 4 +   3845361 GTAC
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56133247 4 + 145441459 ACAG
i mm10.chr7                 I 7 C 0
s canFam3.chr3               60035659 2 -  91889043 --GC
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116290226 220 + 116334831 I
e proCoq1.NW_012148396v1     13506223 205 +  16154928 I
e dasNov3.JH562051             422677 112 +    563711 I

a score=107120.000000
s hg38.chr15_KI270851v1_alt    185505 9 +    263054 CACGCACAG
s panTro5.chr15              73798475 9 -  83230942 CACGCACAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74101866 9 -  99763055 CACGCTCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150699 9 -    281578 CACGCACAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009578 9 + 121039945 CATGCACAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164319444 9 - 169600520 TACGCACAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165640408 9 - 171882078 TACGCACAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       494860 9 +   2379783 TACGCACAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451937 9 +   4116138 TACGCACAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883941 9 +  58131712 TACACACAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       504747 9 -   3636681 TACGCACAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       483789 9 -   4457520 TATGCACAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154515633 9 - 158406734 CACACTCAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             347709 9 -   2682657 CACACACAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371967 9 -   2086007 CACACACAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       435424 9 +   3831555 CACACACAG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             460521 9 +   3845361 CACCTGCAA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56133251 9 + 145441459 TACACACAG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60035661 9 -  91889043 TCTACACAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             422789 9 +    563711 TGTACACAG
i dasNov3.JH562051          I 112 C 0
e micMur3.chr9              116290226 220 + 116334831 I
e proCoq1.NW_012148396v1     13506223 205 +  16154928 I

a score=151691.000000
s hg38.chr15_KI270851v1_alt    185514 23 +    263054 GTCTCCTTTCCAGTCCATCGGCC
s panTro5.chr15              73798484 17 -  83230942 GTCGCCTTTC------ATCGGCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74101875 23 -  99763055 GTCTCCTTTCCAGTCCATTGGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150708 17 -    281578 GTCTCCTTTC------ATCGGCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009587 23 + 121039945 GTCTCCTTTCCAGTCCATCGGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164319453 23 - 169600520 GTCTCCTTTCCAGTCCATTAGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165640417 23 - 171882078 GTCTCCTTTCCAGTCCATTAGCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       494869 23 +   2379783 GTCTCCTTTCCAGTCCATTAGCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451946 23 +   4116138 GTCTCCTTTCCAGTCCATCAGCC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883950 23 +  58131712 GTCTCCTTTCCAGTCCGTTAGCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       504756 23 -   3636681 GTCTCCTTTCCAGTCCATTAGCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       483798 23 -   4457520 GTCTCCTTTCCAGTCCATTAGCC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154515642  8 - 158406734 GTCTCCTT---------------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             347718  8 -   2682657 GTCTCCTT---------------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371976  8 -   2086007 GTCCCCTT---------------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       435433  8 +   3831555 GTCTCCTT---------------
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13506428 23 +  16154928 GTCTCCTTTCCAGCCTGTTGGAT
i proCoq1.NW_012148396v1    I 205 C 0
s otoGar3.GL873689             460530 13 +   3845361 GTCTCCCTTCTAA----------
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56133260 22 + 145441459 CTCTCCTTTCCAGTCTTTTGCT-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60035670 23 -  91889043 GTCTCCTTTATAGTCGACTGGAT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             422798 23 +    563711 ATCTCTTTTCCAGTTCATTAGGT
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116290226 220 + 116334831 I

a score=1686244.000000
s hg38.chr15_KI270851v1_alt    185537 148 +    263054 CTCC-CATCT-CCAAGGATC--------TATCCTTCATTACAGATTGTGTGTT---TCTTA-AATA-TTTTCTCCTTTTCATTCCTTTA-TAA-GTG-CTCTAGG-AATACATAGCCTACCCTGAGGATGTAA-TTCTTTGTAGAAACCCTTCAGATGTG----CTGTTCC-C
s panTro5.chr15              73798501 148 -  83230942 CTCC-CATCT-CCAAG-ATC--------TATCCTTCATTACAGATTGTGTGTC---TTTTA-AATAGTTTTCTCCTTTC---TTCTTTA-TAATGTGGCTCTAAGCGATACG-AGCCTACCTTGAGGATGTTA-TTCTTTGTTAGAAACCTTCAGATGTG----CTGTTCCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74101898 148 -  99763055 CTCC-CATCT-CCAAGGATC--------TATCCTTCATTACAGATTGTGTGTT---TGTTA-AATA-TTTTCTCCTTTTCATTCCTTTA-TAA-GTG-CTCTAGG-AATACGTAGCCTACCCTGAGGATGTAG-TTCTTTGTAGAAACCCTTCAGATGTG----CTGTTCC-C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150725 148 -    281578 CTCC-CATCT-CCAAGGATC--------TATCCTTCATTACAGATTGTGTGTT---TGTTA-AATA-TTTTCTCCTTTTCGTTCTTTTA-TAA-GTG-CTCTAGG-AATACGTAGCCTACCCTGAGGATGTAG-TTCTTTGTAGAAACCCTTCAGATGTG----CTGTTCC-C
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009610 144 + 121039945 CTCC-CATCT-CCAAGGATC--------TATCCTTCATTAAAGATTGTGTGTT---TGTTA------TTTTCTCCTTTTCATTCCTTTA-TAA-GTG-CTCCAGG-AATACGTAGCCTACCCTGAGGATGTAA-TTCTTTGTAGAAACCCTTCAGATGTG----CTGTTCC-C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164319476 146 - 169600520 CTCC-CATCT-CTAAGGATC--------TATCCTTCATTAAAGAT--GGTGTT---TGTTA-AATA-TTTTCTTCTTTTCATTCCTTTA-TAA-GTG-GTCTAGG-AATACATAGCCTACCCTGAGGATGTAA-TTCTTTGTGGAAACCCTTCAGATGTG----CTGTTCC-C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165640440 146 - 171882078 CTCC-CATCT-CTAAGGATC--------TATCCTTCATTAAAGAT--GGTGTT---TGTTA-AATA-TTTTCTTCTTTTCATTCCTTTA-TAA-GTG-GTCTAGG-AATACATAGCCTACCCTGAGGATGTAA-TTCTTTGTGGAAACCCTTCAGATGTG----CTGTTCC-C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       494892 146 +   2379783 CTCC-CATCT-CTAAGGATC--------TATCCTTCATTAAAGAT--GGTGTT---TGTTA-AATA-TTTTCTTCTTTTCATTCCTTTA-TAA-GTG-GTCTAGG-AATACATAGCCTACCCTGAGGATGTAA-TTCTTTGTGGAAACCCTTCAGATGTG----CTGTTCC-C
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       451969 146 +   4116138 CTCC-CATCT-CTAAGGATC--------TATCCTTCATTAAAGAT--TGTGTT---TGTTA-AATA-TTTTCTTCTTTTCATTCCTTTA-TAA-GTG-GCCTAGG-AATACATAGCCTACCCTGAGGATGTAA-TTCTTTGTGGAAACCCTTCAGATGTG----CTGTTCC-C
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53883973 146 +  58131712 CTCC-CATCT-CTAAGGATC--------TATCCTTCATTAAAGAT--TGTGTT---TGTTA-AATG-TTTTCTTCTTTTCATTCCTTTA-TAA-GTG-GTCTAGG-AATACATAGCCTACCCTGAGGATGTAA-TTCTTTGTGGAAACCCTTCAGATGTG----CTGTTCC-C
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       504779 145 -   3636681 CTCC-CATCT-CTAAGGATC--------TATCCTTCATTAAAGAT--TGTGTT---TGTTA-AATA-TTTTCTTCTTTTCATTCCTTTA-TAA-GTG-GTCTAGG-AATACATAGCCTACCCTGAGGATGTAA-TTC-TTGTGGAAACCCTTCAGATGTG----CTGTTCC-C
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       483821 146 -   4457520 CTCC-CATCT-CTAAGGATC--------TATCCTTCATTAAAGAT--TGTGTG---TGTTA-AATA-TTTTCTTCTTTTCATTCCTTTA-TAA-GTG-GTCTAGG-AATACATAGCCTACCCTGAGGATGTAA-TTCTTTGTAGAAACCCTTCAGATGTG----CTGTTCC-C
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154515650 133 - 158406734 -------------AAGGATC--------TATCTTTCATTAAAGAT----TGTG---TGTTA-AATA-TTTTCTCCTTCTTGTTCCTTTA-TAA-ATG-CTCTCGG-AATATGTAGCCTACCTTGAGGATGTAA-TTGTTTGTAGAAACCGTTCCGGTGCG----CCATTCC-C
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             347726 137 -   2682657 -------------AAGGATC--------TGTCTTTCATTACAGATTGCGTGTG---TGTTA-AATA-CTTTCTCCTTCTTGTTCCTTTA-TAA-ATG-CTCTAGG-AATATGTAGCCTGCCTCGAGGATGTAA-GTCTTTGTAGAAACCCTTCAGATGCG----CTATTCC-C
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       371984 128 -   2086007 -------------AAGGATC--------TCTCTTTCATTACAGATTGCGTGTG---TGTTA-AATA-TTTTCTCCTCCTTGTTCCTTTA-CAA-ATG-CTCTAGG-AATATGTAGCCTACCTCGAGGATGTAA-GTCTGTGTAGAAACCCTTCAGATGC--------------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       435441 137 +   3831555 -------------AAGGATC--------TATCTTTCATTAAAGATTGCGTGTT---TGTTA-AATA-TTTTCTTCTTCTTGTTCCTTTA-TAA-ATG-CTCTAGG-AATATGTAGCCTACCTTGAGGATGTAA-TTATTTGTAGAAACCCTTCAGATGCG----CTATTCC-C
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116290446 147 + 116334831 CTCC-CATCT-CTAAGGATC--------TATCCTTTAATAAAGATTGTGTGT----TGTTA-AATA-TTCTCTTATTCTTGTTACTTTA-TAA-ATG-CTCTAGG-AATATGTAGCCTACCCTGAGGATGTTT-TTCTTTGTAGAAACCCTTCAGGTATG----CTGTTCC-C
i micMur3.chr9              I 220 I 185
s proCoq1.NW_012148396v1     13506451 147 +  16154928 CTCC-CATCT-CTAAGGATC--------TATCCTTTAATAAAGATTGTGTGT----TGTTA-AATA-TTCTCTCATTCTTGTTACTTTA-TAA-ATG-CTCTAGG-AATATGTAGCCTACCCTGGGGATATTT-TTCTTTGTAGAAACCCTTCAGGCATG----CTGTTCC-C
i proCoq1.NW_012148396v1    C 0 I 1
s otoGar3.GL873689             460543 133 +   3845361 -----------------ATC--------TCTCCTTCACTAAAGACTGTGTGT----TGTTA-AAGA-TTCTCTTATTCTTCCTACTTTA-TAA-ATG-CTTTAGG-AGTATGCTGCCTACCTTGAGGCTGGTTATTTTTTGTAGAAACCCTTCAAGAGTG----CTGTTCT-C
i otoGar3.GL873689          C 0 I 1
s mm10.chr7                  56133282 131 + 145441459 TTCC-TATTA-GTAAGATTT--------TTTTTTTTGATGATGATTGTGGGTT---TGTTAAAATA-TTGTCTTGTTTCTTTAGTTTTA-TGA-ACA-ATCCAGA----------------TTGAAGATG----GTTTTTATAGAAACTTTTCAGGCATG----CTGTCTC-T
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60035693 141 -  91889043 TTCC-GATCTCCCAAGGATC--------TCTCTTAC---TAAGATCCCATGTTGTATGTTT-AGCA-GTCTGCCATTTTTATTACTAGA-TTA--TG-CTCTAGG-GAAATATGGCTTGCCCTGA------CT-GTCTTTGTAG-ATCCCTTCTCACGTG----CTGTTTT-C
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             422821 164 +    563711 CTCCATGTCT-CTAAGGATCTAGCAGTTTATCCCTTATTAAAAACTGAATATTGTATGTTC-AGTA-TTCCGTCCTTCTTATTTCTTTATTTA-TTG-CTTTTTATAATATTTGGTCTGTCCTAGAAATGTT--TGCTTTCTTTTACCCATTCATGTGTGCCTACTGTTCC--
i dasNov3.JH562051          C 0 C 0

a score=197776.000000
s hg38.chr15_KI270851v1_alt    185685 16 +    263054 TGCCTGGATACTCAGC
s panTro5.chr15              73798649 12 -  83230942 TGT---GATAC-CAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74102046 16 -  99763055 TGCCTGGATACTCAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150873 16 -    281578 TGCCTGGATACTGAGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009754 16 + 121039945 TGCCTGGATACTCAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164319622 16 - 169600520 TGCCTGGATACTCAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165640586 16 - 171882078 TGCCTGGATACTCAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       495038 16 +   2379783 TGCCTGGATACTCAGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       452115 16 +   4116138 TGCCTGGATACTCAGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53884119 16 +  58131712 TGCCTGGATACTCAGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       504924 16 -   3636681 TGCCTGGATACTCAGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       483967 16 -   4457520 TGCCTGGATACTCAGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154515783 16 - 158406734 TGCCTGGGTACTCAGC
i calJac3.chr6              C 0 I 6
s saiBol1.JH378292             347863 16 -   2682657 TGCCTGGATACTCAGC
i saiBol1.JH378292          C 0 I 6
s cebCap1.NW_016107707v1       372112 15 -   2086007 -TCCTGGATACTCAGC
i cebCap1.NW_016107707v1    C 0 I 6
s aotNan1.NW_018503298v1       435578 16 +   3831555 TGCCTGGATACTCAGC
i aotNan1.NW_018503298v1    C 0 I 17
s proCoq1.NW_012148396v1     13506599 16 +  16154928 TGCCTGGATGCTCAGT
i proCoq1.NW_012148396v1    I 1 C 0
s otoGar3.GL873689             460677 15 +   3845361 TGCCTGGATGCTGAG-
i otoGar3.GL873689          I 1 C 0
s mm10.chr7                  56133413 16 + 145441459 TGTCCGCATGCTCAGT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60035835 16 -  91889043 TACCTGGATGCTCAGT
i canFam3.chr3              I 1 C 0
s dasNov3.JH562051             422985  3 +    563711 -ACC------------
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116290593 185 + 116334831 I

a score=41101.000000
s hg38.chr15_KI270851v1_alt    185701 5 +    263054 GTCTG
s panTro5.chr15              73798661 5 -  83230942 GTTCG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74102062 5 -  99763055 GTGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150889 5 -    281578 GTCTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009770 5 + 121039945 GTCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164319638 5 - 169600520 GTCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165640602 5 - 171882078 GTCTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       495054 5 +   2379783 GTCTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       452131 5 +   4116138 GTCTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53884135 5 +  58131712 GTCTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       504940 5 -   3636681 GTCTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       483983 5 -   4457520 GTCTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154515805 5 - 158406734 GTCTG
i calJac3.chr6              I 6 I 6
s saiBol1.JH378292             347885 5 -   2682657 GTCTG
i saiBol1.JH378292          I 6 I 6
s cebCap1.NW_016107707v1       372133 5 -   2086007 GTCTG
i cebCap1.NW_016107707v1    I 6 I 6
s proCoq1.NW_012148396v1     13506615 3 +  16154928 --CTT
i proCoq1.NW_012148396v1    C 0 I 2
s mm10.chr7                  56133429 5 + 145441459 ATCTT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60035851 5 -  91889043 GTTTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             422988 5 +    563711 TTCTC
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116290593 185 + 116334831 I
e aotNan1.NW_018503298v1       435594 17 +   3831555 I
e otoGar3.GL873689             460692 0 +   3845361 C

a score=358911.000000
s hg38.chr15_KI270851v1_alt    185706 30 +    263054 GGTCTT-ATTCCTCATCTTA----GCTCAGTTGTT
s panTro5.chr15              73798666 31 -  83230942 GGTCTTCATTCCTCATCTTA----GCTCAGTTGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74102067 30 -  99763055 GGTCTT-ATTCCTCATCTTA----GCTCAGTTGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150894 30 -    281578 GGTCTT-ATTCCTCATCTTA----GCTCAGTTGTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009775 30 + 121039945 GGTCTT-ATTCCTCATCTTA----GCTCAGTTGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164319643 30 - 169600520 GGTCTT-ATTCCCCATCTTA----GCTCAGTTATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165640607 30 - 171882078 GGTCTT-ATTCCCCATCTTA----GCTCAGTTATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       495059 30 +   2379783 GGTCTT-ATTCCCCATCTTA----GCTCAGTTATT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       452136 30 +   4116138 GGTCTT-ATTCCCCATCTTA----GCTCAGTTATT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53884140 30 +  58131712 GGTCTT-ATTCCCCATCTTA----GCTCAGTTATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       504945 30 -   3636681 GGTCTT-ATTCCCCATCTTA----GCTCAGTTATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       483988 30 -   4457520 GGTCTT-ATTCCCCATCTTA----GCTCAGTTATT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154515816 30 - 158406734 GGTCTT-ATTCCTCATCTTA----TCTCAGTTTTT
i calJac3.chr6              I 6 C 0
s saiBol1.JH378292             347896 30 -   2682657 GGTCTT-ATTCCTCATCTTA----CCTTGGTTGTT
i saiBol1.JH378292          I 6 C 0
s cebCap1.NW_016107707v1       372144 25 -   2086007 GGTCTT-ATTCCTCATCTTA---------GTTGTT
i cebCap1.NW_016107707v1    I 6 C 0
s aotNan1.NW_018503298v1       435611 30 +   3831555 GGTCTT-ATTCCTCATCTTA----TCTCAGTTGTT
i aotNan1.NW_018503298v1    I 17 C 0
s proCoq1.NW_012148396v1     13506620 30 +  16154928 TTTCTT-ATTCCGGATCTCA----GCTCAGTTGTC
i proCoq1.NW_012148396v1    I 2 C 0
s otoGar3.GL873689             460692 21 +   3845361 ----------CTGGGTCTCA----GCTCAGTAGCG
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56133434 34 + 145441459 TGTCTT-ATTCTAGAACTCAGAATGCTCAGTTGTC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60035856 30 -  91889043 TGTCTT-TATCTAAATCTCA----GCTCAGTTGTC
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             422993 30 +    563711 TGTCTC-ATCCCAGAGCTCA----CCTTAGGAGGT
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116290593 185 + 116334831 I

a score=97491.000000
s hg38.chr15_KI270851v1_alt    185736 7 +    263054 GCTTCCA
s panTro5.chr15              73798697 7 -  83230942 GCTTCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74102097 7 -  99763055 GCTTCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150924 7 -    281578 GCTTCCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009805 7 + 121039945 GCTTCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164319673 7 - 169600520 GCTTCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165640637 7 - 171882078 GCTTCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       495089 7 +   2379783 GCTTCCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       452166 7 +   4116138 GCTTCCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53884170 7 +  58131712 GCTTCCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       504975 7 -   3636681 GCTTCCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       484018 7 -   4457520 GCTTCCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154515846 7 - 158406734 GCTTCCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             347926 7 -   2682657 GCTTCCA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       372169 7 -   2086007 GCTTCCA
i cebCap1.NW_016107707v1    C 0 C 0
s proCoq1.NW_012148396v1     13506650 7 +  16154928 GTCTCCA
i proCoq1.NW_012148396v1    C 0 I 125
s otoGar3.GL873689             460713 7 +   3845361 AGTTCCG
i otoGar3.GL873689          C 0 I 3
s mm10.chr7                  56133468 7 + 145441459 ACTTCCT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60035886 7 -  91889043 ACTTCCA
i canFam3.chr3              C 0 I 3
s dasNov3.JH562051             423023 7 +    563711 GTTGCTA
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116290593 185 + 116334831 I
e aotNan1.NW_018503298v1       435641 0 +   3831555 C

a score=1065713.000000
s hg38.chr15_KI270851v1_alt    185743 124 +    263054 --CAAGTCCCTCACTGACCCTCAGAATAGCGGTGG---TCTGTCTTCCAGTCTCCCTGGTA-C-CC-CC-ATAGTCATCTGTTGCA--CAGTT-TTGGACTTGAAATCCTGTGATTAATTGTGTCAGC-GGTGCCCT
s panTro5.chr15              73798704 122 -  83230942 --CAAG--CCTTACTGACCCCCAGAATAGCGGTGG---TCTGTCTTCCAGTCTCCCTGGTA-CTCC-CC-ATAGTCATC-GTTGCA-ATAGTT-TTGGACT-GAAATCCTG-GATTAGTTGTGTCAGCCGGTGCCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74102104 126 -  99763055 --CAAGTCCCTTACTGACCCCCAGAATAGCGGTGG---TCTGTCTTCCAGTCTCCCTGGTA-C-CC-CC-ATAGTCATCCGTTGCACATAGTT-TTGGACTTGAAATCCTGCGATTAGTTGTGTCAGC-GGTGCCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       150931 126 -    281578 --CAAGTCCCTTACTGACCCCCAGAATAGCGGTGG---TCTGTCTTCCAGTCTCCCTGGTA-C-CC-CC-ATAGTCATCCGTTGCACATAGTT-TTGGACTTGAAATCCTGTGATTAGTTGTGTCAGC-AGCACCCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009812 126 + 121039945 --CAAGTCCATTACCGACCCTCAGAATAGCGGTGA---TCTGTCTTCCAGTCTCCCTGGTA-C-CC-CC-ATAGTCATCCATTGCACATAGTT-TCAGACTTGAAATCCTGTGATTAGTTGTGTCAGT-GGTGCCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164319680 126 - 169600520 --CAAGCCCCTTACTGATCCTCAGAACAGCAGTGG---TCTGTCTTCCAGTCTCCCTGGTA-C-CC-CC-ACAGTCATCCGTTGCACACAGTT-TCGGACTTGAAATCCTGTGATTAGTTGTGTCAGC-GGTGCCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165640644 126 - 171882078 --CAAGCCCCTTACTGATCCTCAGAACAGCAGTGG---TCTGTCTTCCAGTCTCCCTGGTA-C-CC-CC-ACAGTCATCCGTTGCACACAGTT-TCGGACTTGAAATCCTGTGATTAGTTGTGTCAGC-GGTGCCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       495096 126 +   2379783 --CAAGCCCCTTACTGATCCTCAGAACAGCAGTGG---TCTGTCTTCCAGTCTCCCTGGTA-C-CC-CC-ACAGTCATCCGTTGCACACAGTT-TCGGACTTGAAATCCTGTGATTAGTTGTGTCAGT-GGTGCCCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       452173 126 +   4116138 --CAAGTCCCTTACTGACCCTCAGAACAGCAGTGG---TCTGTCTTCCAGTCTCCCTGGTA-C-CC-CC-ACAGTCATCCGTTGCACACAGTT-TCGGACCTGAAATCCTGTGATTAGTTGTGTCAGC-GGTGCCCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53884177 125 +  58131712 --CAAGTCCCTT-CTGACCCTCAGAACAGCAGTGG---TCTGTCTTCCAGTCTCCCTGGTA-C-CC-CC-ACAGTCATCCGTTGCACACAGTT-TCGGACCTGAAATCCTGTGATTAGTTGTGTCAGC-GGTGCCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       504982 126 -   3636681 --CAAGTCCCTTACTGACCCTCAGAACAGCAGTGG---TCTGTCTTCCAGTCTCCCTGGTA-C-CC-CC-ACACTCATCCGTTGCACACAGTT-TCGGACCTGAAATCCTGTGATTACTTGTGTCAGC-GGTGCCCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       484025 126 -   4457520 --CAAGTCCCTTACTGACCCTCAGAACAGCAGTGG---TCTATCTTCCAGTCTCCCTGGTA-C-CC-CC-ACAGTCATCCGTTACACACAGTT-TCGGACTTGAAATCCTGTGATTAGTTGCGTCAGC-GGTGCCCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154515853 119 - 158406734 --CAAGTCCTTTACTGAGCCTCAGAATAGTGGTGG---TCTCTCATCCAGTCTCCCTGGTA-C-CC-CA-ATAGTCA-------AACATAGTT-TCAGACTTGAAATCCTGTGATTAGTTGTGTCAGT-GGTGCCCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             347933 119 -   2682657 --CAAGTCCTTTACTGAGCCTCACAATAGTGGTGG---TCTGTCATCGAGTCACCCTGGTA-C-CC-CG-ATAGTCA-------AACATACTT-TCAGACTTGGAATCCTGTGATTAGATGTGTCCGT-GGTGCCCT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       372176 119 -   2086007 --CAAGTCCTATACTGAGCCTCAGAATGGTGGTGG---TCTGTCATCCAGTCTCCCTGGTA-C-CC-TG-ATAGTCA-------AACATACTT-TCAGACTTGGAATCCTGTGATTAGTTGTGTCCGT-GGTGCCCT
i cebCap1.NW_016107707v1    C 0 C 0
s otoGar3.GL873689             460723 123 +   3845361 --CAAGTGCTTTACTGATTTTCAGAGTAATGATGG---TCT-CCTGCCGCTTGCTCTTGTGTC-CC-CT-GTGGTCCTCAGATGCC--TAGTC-TCACAGCTGAAACTGAGTGGGTGG-TGAGTGAGT-GTTGCCCC
i otoGar3.GL873689          I 3 C 0
s mm10.chr7                  56133475 105 + 145441459 ---------CTT-----CCTTTAGCACAGTGGTGATTTTCTGCCTTCATGCCCTTGATATG-C-CT-CT-GCTGTCTTCC-----------CT-TCACAACTGGAGTTGAGTGCTGAGCTCTGTAAGG-GGAGCTT-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60035896 128 -  91889043 --CAAATTTTTTACTGAATCTTCGAATAGTGGAGG---TTTTGCTGCTGACCACTGTTGTG-C-CCACT-ATAGTACTTTGTAGCATACAGTTATCCCAGTTCAAGTTGAATGATTACTTGTATAAGT-GTTCCCCA
i canFam3.chr3              I 3 I 2
s dasNov3.JH562051             423030 127 +    563711 TGGGAACCCTTTCCTGATCCTCAGAATAGGTGAGG---CCTCTCTGCTGTACACTTTCATG-C-CC-CCTGTAGCACTTTGATGCATACCG---TCATCACTGAAAGGTAGTGATGGGTTGTGTAAGC-AGTGCTGT
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116290593 185 + 116334831 I
e proCoq1.NW_012148396v1     13506657 125 +  16154928 I
e aotNan1.NW_018503298v1       435641   0 +   3831555 C

a score=1748.000000
s hg38.chr15_KI270851v1_alt    185867 1 +    263054 -T
s panTro5.chr15              73798826 1 -  83230942 -T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74102230 1 -  99763055 -T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       151057 1 -    281578 -T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009938 1 + 121039945 -T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164319806 1 - 169600520 -T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165640770 1 - 171882078 -T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       495222 1 +   2379783 -T
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       452299 1 +   4116138 -T
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53884302 1 +  58131712 -T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       505108 1 -   3636681 -T
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       484151 1 -   4457520 -T
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154515972 1 - 158406734 -T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             348052 1 -   2682657 -T
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       372295 1 -   2086007 -T
i cebCap1.NW_016107707v1    C 0 C 0
s proCoq1.NW_012148396v1     13506782 1 +  16154928 -C
i proCoq1.NW_012148396v1    I 125 C 0
s otoGar3.GL873689             460846 1 +   3845361 -C
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56133580 1 + 145441459 -T
i mm10.chr7                 C 0 C 0
s dasNov3.JH562051             423157 1 +    563711 A-
i dasNov3.JH562051          C 0 I 1
e micMur3.chr9              116290593 185 + 116334831 I
e canFam3.chr3               60036024 2 -  91889043 I
e aotNan1.NW_018503298v1       435641 0 +   3831555 C

a score=497154.000000
s hg38.chr15_KI270851v1_alt    185868 44 +    263054 TGCTGCCTTCCCTGTTAGAATGTGCA-CCTCAGTCTTCACACGGT
s panTro5.chr15              73798827 43 -  83230942 TGCTGCCTTCC-TGTTAGAATTGGCA-CCTCAGTCTTCACACGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74102231 44 -  99763055 TGCTGCCTTCCCTGTTAGAATGTGCA-CCTCAGTCTTCACACCGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       151058 44 -    281578 TGCTGCCTTCCTTGTTAGAATGTGCA-CCTCAGTCTTTACACGGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009939 44 + 121039945 TGCTGCCCTCCCTGTTAGAATGTGCA-ACTCAGTCTTCACACGGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164319807 44 - 169600520 TGCTGCCCTCCCTGTTACAATGTGCA-ACTCAGTCTTCACACGGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165640771 44 - 171882078 TGCTGCCCTCCCTGTTACAATGTGCA-ACTCAGTCTTCACACGGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       495223 44 +   2379783 TGCTGCCCTCCCTGTTACAATGTGCA-ACTCAGTCTTCACACGGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       452300 44 +   4116138 TGCTGCCCTCCCTGTTACAATGTGCA-ACTCAGTCTTCACACGGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53884303 44 +  58131712 TGCTGCCCTCCCTGTTACAATGTGCA-ACTCAGTCTTCACACGGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       505109 44 -   3636681 TGCTGCCCTCCCTGTTACAATGTGCA-ACTCAGTCTTCACACAGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       484152 44 -   4457520 TGCTGCCCTGCCTGTTACAATGTGCA-ACTCAGTCTTCACATGGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154515973 44 - 158406734 TGCCGCTCTCCCTGTTAGAATGTGCC-ACTCAGTCTTTGCACAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             348053 44 -   2682657 TGCTGCTCTCCGTGATAGAATGTGCC-ACCCAGTCTTTGCACAGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       372296 44 -   2086007 TGCTGCTCTCCCTGTCAGAATGTGCC-ACCCAGTCTTCGCACGGT
i cebCap1.NW_016107707v1    C 0 C 0
s micMur3.chr9              116290778 44 + 116334831 TGCTGCTCTCCCTGGTAGAATGGGAA-TCTCAGTCTTCAGACAGT
i micMur3.chr9              I 185 C 0
s proCoq1.NW_012148396v1     13506783 44 +  16154928 TGCTGCTCTCCCTGTTGGAATGGGAA-TCCCAGTCTTCAGACAGT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             460847 31 +   3845361 ------------TGCTGGAAC-GGAA-TCCCTGGCTCCAGACAGT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56133581 28 + 145441459 ------------TGTTGTGGT----A-CCCGAGTCTTCAGATGGT
i mm10.chr7                 C 0 I 860
s canFam3.chr3               60036026 45 -  91889043 TGCTGCTCTCCCTGTTAAAATGCAAAGTCCCAGTCTTCACACAGT
i canFam3.chr3              I 2 C 0
s dasNov3.JH562051             423159 32 +    563711 TGCTGAGCTCCCTG-------------TCCTAGTCTTCACATGAA
i dasNov3.JH562051          I 1 C 0
e aotNan1.NW_018503298v1       435641  0 +   3831555 C

a score=1849437.000000
s hg38.chr15_KI270851v1_alt    185912 163 +    263054 ACCTGTGGAACCAGGCAGCTGCAGGCAGAGCACAGGTATCC-AGAGAA-TGTTGGACTGG---AACTACGAT--CCTGAGTTCTGATGCCATGCCTGAG-GCGTGTGGACTCACCAGAAAG--------TGTGT---TCACGTAGATAGA-GGAATTATAAGTCAACCTGTGTAA----ACATGTTA
s panTro5.chr15              73798870 164 -  83230942 ATCTGTGGAACCAG-CAGCTGCAGGCAGAGCACAGGTATAC-AGTGAA-TGCTGGACTGG---AACTACGGTTACCTGA-TTCTGATGCCATGC-TGAGTGCGTGTGGAATCACCAGAA-G--------TGTGTATTTCACGTAGATAGA-GGAATTATAAGTCAAC-TGTGTAA----ACATGTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74102275 163 -  99763055 ATCTGTGGAACCAGGCAGCTGCAGGCAGAGCACAGGTATCC-GGTGAA-TGCTGGACTTG---AACTACGAT--CCTGAGTTCTGATGCCATGCCTGAA-GCGTGTGGAATCACCAGAAAG--------TGTGT---TCACGTAGATAGA-GGAATTATAAGTCAACCTGTGTAA----ACATGTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       151102 163 -    281578 ATCTGTGGAACTAGGCAGCTGCAGGCAGAGCACAGGTATCC-AGTGAA-TGCTGGACTGG---AACTACGAT--CCTGAGTTCTGATGCCATGCCTGAA-GCGTGTGGAATCACCAGAAAG--------TGTGT---TCACGTAGATAGA-GGAATTATAAGTCAACCTGTGTAA----ACATGTTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71009983 163 + 121039945 ATCTGTGGAACCAGGCAGCTGCAGGCAGAGCACAGGTATCC-AGTGAA-TGTTGGACTGG---AACTACGAT--CCTGAGTTCTGATGCCATGCCTGAA-GCGTGTGAAATCACCAGAAAG--------TGTGT---TCACATAGACAGA-GGAATCATAAGTCAACCTGTGTAA----ACGTGTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164319851 163 - 169600520 ATCCGTGGAACCCGGCAGCTGCAGGCAGAGCACAGGTATCC-AGTGAA-TGTTGGGCTGG---GACTACGAT--CCTGAGTTCCAGTGCCATGCCTGAG-GCGTGTGGAATCACCAGGAAG--------TGTGT---TCACGTAGATAGA-GGAATTATAAGTCAACCTGTGTAA----ACATGTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165640815 163 - 171882078 ATCCGTGGAACCCGGCAGCTGCAGGCAGAGCACAGGTATCC-AGTGAA-TGTTGGGCTGG---GACTACGAT--CCTGAGTTCCAGTGCCATGCCTGAG-GCGTGTGGAATCACCAGGAAG--------TGTGT---TCACGTAGATAGA-GGAATTATAAGTCAACCTGTGTAA----ACATGTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       495267 163 +   2379783 ATCCGTGGAACCTGGCAGCTGCAGGCAGAGCACAGGTATCC-AGTGAA-TGTTGGGCTGG---GACTACGAT--CCTGAGTTCCAGTGCCATGCCTGAG-GTGTGTGGAATCACCAGGAAG--------TGTGT---TCACGTAGATAGA-GGAATTATAAGTCAACCTGTGTAA----ACATGTTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       452344 162 +   4116138 ATCTGTGGAACCTGGCAGCTGCAGGCAGAGCACAGGTATCC-AGTGAA-TGTTGGGCTGG---GACTACGAT--CCTGAGTTCCAGTGCCATGCCTGAG-GCGTGTGGAATCACCAGGAA---------TGTGT---TCATGTAGATAGA-GGAATTATAAGTCAACCTGTGTAA----ACATGTTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53884347 162 +  58131712 ATCTGTGGAACCCGGCAGCTGCAGGCAGAGCACAGGTATCC-AGTGAA-TGTTGGGCTGG---GACTACGAT--CCTGAGTTCCAGTGCCATGCCTGAG-GCGTGCGGAATCACCAGGAG---------TGTGT---TCACGTAGATAGA-GGAATTATAAGTCAACCTGTGTAA----ACATGTTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       505153 162 -   3636681 ATCTGTGGAACCCGGCAGCTGCAGGCAGAGCACAGGTATCC-AGTGAA-TGTTGGGCTGG---GACTACGAT--CCTGAGTTCCAGTGCCATGCCTGAG-GCATGTGGAATCACCAGGAG---------TGTGT---TCACGTAGATAGA-GGAATTATAAGTCAACCTGTGTAA----ACATGTTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       484196 163 -   4457520 ATCTGTGGAACCCGGCAGCTGCAGGCAGAGCACAGGTATCC-AGTGAA-TGTTGGGCTGG---GACTATGAT--CCTGAGTTCCAGTGCCATGCCTGAG-GCGTGTGGAATCACCAGGAAG--------TGTGT---TCACGTAGATAGA-GGAATTATAAGTCAACCTGTGTAA----ACGTGCTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154516017 174 - 158406734 GTCTGTGCAGCCAGGCAGCTGCAGGCAGAGGACAGGGGTCC-AGTGAA-TGTTGGACTGG---GCCTATGAT--CCTCAGTTCTGATGCCATGCCTGAG-GCATGTGGAATCACCAGAAAGTGTT-ACCTGTGT---TCACATAGATGGA-GGAATCATAAGTCAACCTGTGTAAACAGACATGTTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             348097 174 -   2682657 ATCTGTGCAGCCTGGCAGCTGCAGGCAGAGGGCAGGTGTCC-AGTGGA-TGTTGGATTGG---AACCACAAT--CCTGTGTTCTGATGCCATGCCTGAG-GCATGTGGAGTCACCAGAAAGTGTT-ACCTGTGT---TCACGCAGATGGA-GGAATTATAAGTCAGCCTGTGTAAACAGACACGTTA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       372340 174 -   2086007 ATCTGTGCAGCCAGGCAGCTGTAGGCAAAGGACAGGTGTCC-AGTGGA-TTTTGGACTGG---AACGATGAT--CCTGAGTTCTGATGCCATGCCTGAG-GCATGTGGAATCACCAGAAAGTGTT-ACCTGTGT---TCACATAGATGGA-GGAATCATAAGTCAGCCTGTGTAAACAGACATGTTA
i cebCap1.NW_016107707v1    C 0 C 0
s micMur3.chr9              116290822 165 + 116334831 ATCTGTGGAACCAGGCATCTCTGTGCAGAGTACAGGGATCC-AGTAAA-TGTTGGGCTAG---AACT---GT--CCTGAGTTGTGATACCATGCTTAAG-GCGTGTTGAATAACCAG-AAGTGTTAACCTGTGT---TAACATAGATAGT-GGAATTGTAAGTCAGTTTGTGTAA------ATATCA
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13506827 164 +  16154928 ATCTGTGGAACCAGGCAGTTCCATGCAGAGTGCAGGGATCT-AGTAAA-TGTTGGGCTGG---AACT---GT--CCTGAGTC-TGATACCATGCTTAAG-GTATGTTGAATAACCAGAAAGTGTT-ACCTGTGT---TAACATAGATAGT-GGAATTGTAAGTCAGTCTGTGTAA------ATATTA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             460878 168 +   3845361 GTTTGTGGAGCTGGGCAGCTCCACGCAGAGTACAGGGATCC-AGCGAACTGTTGGGTTGGAAAAACT---GT---ATGAGTTCTGATACCACACTTGAG-GTGTACTGAGTAACCAGAAAGTGTT-ACCTGTGT---TCATATAGATGGT-GGAATTGTAAGTCAGTCTGTGTAA------ATGTTA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60036071 158 -  91889043 ATTTGTGGTACCTGTCAGCTCCATGCTTGAC-CAAGTGTCCGAGTAGA-TGTTGGACTGG---AACTACTGT-------GTTCTGACACCATGCTTACA-GTGTAGTGAAGAACCGGAAC---------TGTTT---TCATACAGATACAGGGAAGTATAAGCTAGTTTCTGTAA----ATATGATA
i canFam3.chr3              C 0 I 3
s dasNov3.JH562051             423191 163 +    563711 GACTGCAGAACCAAACAGCTCCAAGCATAGAGTAGGTATCC-AGTAAA-TGTTGGACTGG---AAATATTAC--ACTAAATCCTGATATTATGCCTAAA--TATTTTGAACAACCAGAAAGTGTT-ACCTGGTT---TCACATAGACATA-GGAATTACAAGTC----TATATAA----GTATGT--
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56133609 860 + 145441459 I
e aotNan1.NW_018503298v1       435641   0 +   3831555 C

a score=265093.000000
s hg38.chr15_KI270851v1_alt    186075 19 +    263054 GGTGGAGCTCTTTCATATG
s panTro5.chr15              73799034 19 -  83230942 GGTGGAGCTTTTCCATATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74102438 19 -  99763055 GGTGGAGCTCTTTCATATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       151265 19 -    281578 GGTGGAGCTCTTTCATATG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71010146 19 + 121039945 GGTGGAGCTCTTTCATATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164320014 19 - 169600520 GGTGGAGCTCTTTCATACG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165640978 19 - 171882078 GGTGGAGCTCTTTCATACG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       495430 19 +   2379783 GGTGGAGCTCTTTCATACG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       452506 19 +   4116138 GGTGGAGCTCTTTCATATG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53884509 19 +  58131712 GGTGGAGCTCTTTCATATG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       505315 19 -   3636681 GGTGGAGCTCTTTCATATG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       484359 19 -   4457520 GGTGGAGCTCTTTCATATG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154516191 19 - 158406734 GGTGGAGCCGTTTCATATG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             348271 19 -   2682657 GGTGGAGCCCTTGCGTATG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       372514 19 -   2086007 GGTGGAGCCCTTTCATATG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       435641 19 +   3831555 GGTGGAGCCCTTTCATATG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116290987 19 + 116334831 GATGTAACTCTTTCATATG
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13506991 19 +  16154928 GATGTAACTCTTTCATGTG
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             461046 19 +   3845361 GATGTAGCTCTTTTATAGG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60036232 19 -  91889043 AATATGACTCTTTAATATG
i canFam3.chr3              I 3 C 0
s dasNov3.JH562051             423354 10 +    563711 ---------CTCTCATAAA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56133609 860 + 145441459 I

a score=12555431.000000
s hg38.chr15_KI270851v1_alt    186094 780 +    263054 AATGATGCT-GA--ATTTCACCTT-CTAAATTGAGTGTTCAGTTGAGCA-TC--------TTTTTTTTTTTT-TAGTATTTATT-TTG-AGTTGTG--CACTTGAGTTTCTCTTTCATGTTTGCGTGTGCAT-TTTCTAGAATGGCTTCAGTCATCCATCTTCTCTGGAGGCCTGCAGACCAGCCAGATCCACTACAGCTACAACGAGGAGAAAGACGAGGA-CCACTGCAGCTCCCCAGGGGG--CACACCTGCCAGCAAATCTCGACTCTGCTCCCACAGACGGGCCCTGGGGGACCATTCCCAGGCATTTCTGCAAGCCATTGC-AGACAACAACATTCAGGATCACAA-CGTGAAGGTGAGCT---------------------------AGGCCTGCCCCCACTGC---------CACCTCAGTGCTCTGTTTATCTGA-GGACTTT-GACATAGGAATACTTATGTGCTCTTTGGTTAACAC--AGCA-CAGACTTTGTTT--------------------CATGTATTATTTGGAG----GGT-----TTTGAGGTGAGAACCTGATTG-------------------TGT-TAA-CATGCTAGCGAGGCTTCAGAAGCATTAGTGATTGC---AAGTGCGTCAGAAGCTGTGGCAT---GTTT-AAGATTTGTGAAGACTCACT-GGGTTT-CCCTGAAGTTACTTCCAGCTGTTCCTGTTGCAGGACTTTTTGTGTCAAATAG-AAAGGTACTGTAGGCAGTGCCATTTGACCACACCGATCATGTTTCCCCCCGAGCATCCCG-TGGAAGAGGTCGGTCGCTTGCTGTT-ATGTTGCCTCTTAAAACAT-GAAGATTTAGGTAAGGAGCTCAATATCTTTGTACTTTAG-CTACACTGC
s panTro5.chr15              73799053 784 -  83230942 AATGATGCTTGA--ATTTCACCTTTCTTAAATG-GTGTTCATTTGAGCA-TC--------TTTTTTTGTTTT-TAGTATTTATT-TTG-AGTTGTG--CACTTGAGTTTCTCTTTCATGTTTGCGT-TGCATATTTCTAGAATGGCTTCAGTCATCCATCTTCTCTGGAGGCCTGCAGACCAGCCAGATCCACTACAGCTACAACGAGGAGAA-GACGAGGAACCACTGCAGCTCCCCAGGGGGGGCACACCTGC-AGCAAATCTCGACTCTGCTCCCACAGACCGGCCCTGGGGGACCATTCCCAGGCATTTCTGCAAGCCATTGCCAGACAACAACAT--AGGATCACAAACGTGAAGGTGAGCT---------------------------AGGCCTGCCCCCACTGC---------CACCTCAG--CTCTGTTTATCTGACGGACTTTTGACATAGGAATACTTATGTGCTCTTTGGTTAA-AC--AGCAACAGACTTTGTTT-------------------TCATGTATTATTTGGAG----GGT-----TTTGAGGTGAGAACCTGATTG-------------------TAT-TAA-CATGCTAGCGAG-CTTCA-AAGCATTAGTGATTGC---AAGTGCGTCAGAAGCTGTGGCAT---GTTTTAAGATTTGTGAAGACTCACT-GGGCTGGCTCTGAAGTTACTTCCAGCTGTTTCTGTTGCAGGACTTTTTGTGTCAAATAG-AAAGGTACTGTAGGCAGTGCCATTTGACCACACCGATCATGTTTCCCCCTGAG-ATCCCGGTGGAAG--GTCGGTCGCTTGCTGTTTATGTTGGCTCTTAAAACATCGAAGATTTAGGTAAGGAGCTCGATATCTGTGTACTTTAGGCTACACTGC
i panTro5.chr15             C 0 I 1
s panPan2.chr15              74102457 783 -  99763055 AATGATGCT-GA--ATTTCACCTT-CTAAATTGAGTGTTCAGTTGAGCATTC--------TTTTTTTTTGTT-TAGTATTTATT-TTGTAGTTGTG--CACTTGAGTTTCTCTTTCATGTTTGCGTGTGCAT-TTTCTAGAATGGCTTCAGTCATCCATCTTCTCTGGAGGGCTGCAGACCAGCCAGATCCACTACAGCTACAACGAGGAGAAAGACGAGGA-CCACTGCAGCTCCCCAGGGGG--CACACCTGCCAGCAAATCTCGACTCTGCTCCCACAGACGGGCCCTGGGGGACCATTCTCAGGCATTTCTGCAAGCCATTGC-AGACAACAACATTCAGGATCACAA-CGTGAAGGTGAGCT---------------------------AGGCCTGCCCCCACTGC---------CACCTCAGTGCTCTGTTTATCTGA-GGACTTT-GACATAGGAATACTTATGTGCTCTTTGGTTAACAC--AGCA-CAGACTTTGTTT--------------------CATGTGTTATTTGGAG----GGT-----TTTGAGGTGAGAACCTGATTG-------------------TAT-TAA-CATGCTAGCGAGGCTTCAGAAGCATTAGTGATTGC---AAGTGCGTCAGAAGCTGTGGCAT---GTTT-AAGATTTGTGAAGACTCACT-GGGTGG-CTCTGAAGTTAATTCCAGCTGTTTCTGTTGCAGGACTTTTTGTGTCAAATAGAAAAGGTACTGTAGGCAGTGCCATTTGACCACACCGATCATGTTTCCCCCTGAGCATCCCG-TGGAAGAGGTCGGTCGCTTGCTGTT-ATGTTGCCTCTTAAAACAT-GAAGATTTAGGTAAGGAGCTCGATATCTGTGTACTTTAG-GCACACTGC
i panPan2.chr15             C 0 I 1
s gorGor5.CYUI01000141v1       151284 781 -    281578 AATGATGCT-GA--ATTTCACCTT-CTAAATTGAGTGTTCAGTTGAGCA-TC--------TTTTTTTTTTTTCTAGCATTTATT-TTG-AGTTGTG--CACTTGAGTTTCTCTTTCATGTTTGCGTGTGCAT-TTTCTAGAATGGCTTCAGTCATCCATCTTCTCTGGAGGCCTGCAGACCAGCCAGATCCACTACAGCTACAACGAGGAGAAAGACGAGGA-CCACTGCAGCTCCCCAGGGGG--CACACCTGCCAGCAAATCTCGACTCTGCTCCCACAGACGGGCCCTGGGGGACCATTCCCAGGCATTTCTGCAAGCCATTGC-AGACAACAACATTCAGGATCACAA-CGTGAAGGTGAGCT---------------------------AGGCCTGCCCCCACTGC---------CACCTCAGTGCTCTGTTTATCTGA-GGACTTT-GACATAGGAATACTTACGTGCTCTTTGGTTAACAC--AGCA-CAGACTTTGTTT--------------------CATGTATTATTTGGAG----GGT-----TTTGAGGTGAGAACCTGATTG-------------------TGT-TAA-CATGCTAGCGAGGCTTCAGAAGCATTAGTGATTGC---AAGTGCGTCAGAAGCTGTGGCAT---GTTT-AAGATTTGTGAAGACTCACT-GGGTGG-CTCTGAAGTTACTTCCAGCTGTTTCTGTTGCAGGACTTTTTGTGTCAAATAG-AAAGGTACTGTAGGCAGTGCCATTTGACCACACCGATCATGTTTCCCCCTGAGCATCCCG-TGGAAGAGGTCGGTCGCTTGCTGTT-ATGTTGCCTCTTAAAACAT-GAAGATTTAGGTAAGGAGCTCAATATCTGTGTACTTTAG-GTACACTGC
i gorGor5.CYUI01000141v1    C 0 I 1
s nomLeu3.chr6               71010165 780 + 121039945 AATGATGCT-GA--ATTTCACCTT-CTAAATTGAGTGTTCAGTTGAGCA-TC--------TTTTTTTTTTTT-TAGTATTTATT-TTG-AGTTGTG--CACTTGAGTTTCTCTTTCATGTTTGCATGTGCAT-TTTCTAGAATGGCTTCAGTCATCCATCTTCTCTGGAGGCCTGCAGACCAGCCAGATCCACTACAGCTACAACGAGGAGAAAGACGAGGA-CCACTGCAGCTCCCCAGGGGG--CACACCTGCCAGCAAATCTCGACTCTGCTCCCATAGATGGGCCCTGGGGGACCATGCTCAGGCATTTCTGCAAGCCATTGC-AGACAATAACATTCAGGATCACAA-CGTGAAGGTGAGCT---------------------------AGGCCTGCCCCCACTGC---------CACCTCAGTGCTCTGTTTATCTGA-GGACTTT-GACATAGGAGTACTTATGTGCTCTTTGGTTAACAT--AGCA-CAGACTTTGTTT--------------------CATGTATTATTTGGAG----AGT-----TTTGAGGTGAGAACCTGATTG-------------------TGT-TAA-CATGCTAGTGAGGCTTCAGAAGCATTACTGATTGC---AAGTGCATCAGAAGCTGTGGCAT---GTTT-CAGATTTGTGAAGACTCACT-GGGCGG-CCCTGAAGTTACCTCCAGCTGTTTCTGTTGCAGGACTTTTTGTGTCAAATAG-AAAGGTACTGTAGGCAGTGCCATTTGACCACACCGATCATGTTTCCCCCCGAGCATCCCG-TGGAAGAGGTCGGTCGCTTGCTGTT-ATGTTGCCTCTTAAAACAT-GAAGATTTAGGTAAGGAGCTCAATATCTGTGTATTTTAG-CTACACTGC
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7              164320033 782 - 169600520 AATGATGCT-GA--ATTTCACCTT-CTAAATTGAGTGATCAGTTGAGCA-TC-tttttttttttcttttttt-tAGTA-----T-TTG-AGTTCTG--CACTTGAGTTTCTCTTTCATGTTTGCGTGTGCAT-TTTCTAGAGTGGCTTCAGTCATCCATCTTCTCTGGAGGCCTGCAGACTAGCCAGATCCACTACAGCTACAACGAGGAGAAAGATGAGGA-CCACTGCAGCTCCCCAGGGGG--CACACCTGCCAGCAAATCTCGACTCTGCTCCCACAGACGGGCCCTGGGGGACCATTCCCAGGCGTTTCTGCAAGCCATTGC-AGACAATAACATTCAGGATCACAA-CGTGAAGGTGAGCT---------------------------AGGCCTCCCCCCACTGC---------CACCTCAGTGCTCTGTTTATCTGA-GGACTTT-GACATAGGAATACTTATGTGCTCTTTGGTTAACGT--AGCA-CAGGCGTTGTTT--------------------CATGTATTATTTAGAG----GGT-----TTTGAGGTGAGAACCTGATTC-------------------TGT-TAA-CACGCTAGTGAGGCTTCAGAAGCATTACTGATTGC---AAGTGCGTCAGAAGCTGTGGCAT---GTTT-AAGATTTGTGAAGACTCTCT-GGGCGG-CCCTGAAGTTACCTCCCGCTGTTTCTGTTGCAGGACTTTTTGTGTCAAATAG-AAAGGTACTGTAGGCAGTGCCATCTGACCACACCGATCACGTTTCCTCCGGAGCATCCCG-TGGAAGAGGTCGGTCGCTTGCTGTT-ATGTTGCCTCTTAAAACAT-GAAGATTTAGGTATGGAGCTCAATATCTGTGTACTTTAG-CTACACTGC
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              165640997 781 - 171882078 AATGATGCT-GA--ATTTCACCTT-CTAAATTGAGTGATCAGTTGAGCA-TC--ttttttttttcttttttt-tAGTA-----T-TTG-AGTTGTG--CACTTGAGTTTCTCTTTCATGTTTGCGTGTGCAT-TTTCTAGAGTGGCTTCAGTCATCCATCTTCTCTGGAGGCCTGCAGACTAGCCAGATCCACTACAGCTACAACGAGGAGAAAGATGAGGA-CCACTGCAGCTCCCCAGGGGG--CACACCTGCCAGCAAATCTCGACTCTGCTCCCACAGACGGGCCCTGGGGGACCATTCCCAGGCATTTCTGCAAGCCATTGC-AGACAATAACATTCAGGATCACAA-CGTGAAGGTGAGCT---------------------------AGGCCTCCCCCCACTGC---------CACCTCAGTGCTCTGTTTATCTGA-GGACTTT-GACATAGGAATACTTATGTGCTCTTTGGTTAACAT--AGCA-CAGGCGTTGTTT--------------------CATGTATTATTTAGAG----GGT-----TTTGAGGTGAGAACCTGATTC-------------------TGT-TAA-CACGCTAGTGAGGCTTCAGAAGCATTACTGATTGC---AAGTGCGTCAGAAGCTGTGGCAT---GTTT-AAGATTTGTGAAGACTCTCT-GGGCGG-CCCTGAAGTTACCTCCCGCTGTTTCTGTTGCAGGACTTTTTGTGTCAAATAG-AAAGGTACTGTAGGCAGTGCCATCTGACCACACCGATCACGTTTCCTCCGGAGCATCCCG-TGGAAGAGGTCGGTCGCTTGCTGTT-ATGTTGCCTCTTAAAACAT-GAAGATTTAGGTATGGAGCTCAATATCTGTGTACTTTAG-CTACACTGC
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011934v1       495449 781 +   2379783 AATGATGCT-GA--ATTTCACCTT-CTAAATTGAGTGATCAGTTGAGCA-TC--ttttttttttcttttttt-tAGTA-----T-TTG-AGTTGTG--CACTTGAGTTTCTCTTTCATGTTTGCGTGTGCAT-TTTCTAGAGTGGCTTCAGTCATCCATCTTCTCTGGAGGCCTGCAGACTAGCCAGATCCACTACAGCTACAACGAGGAGAAAGATGAGGA-CCACTGTAGCTCCCCAGGGGG--CACACCTGCCAGCAAATCTCGACTCTGCTCCCACAGACGGGCCCTGGGGGACCATTCCCAGGCATTTCTGCAAGCCATTGC-AGACAATAACATTCAGGATCACAA-CGTGAAGGTGAGCT---------------------------AGGCCTCCCCCCACTGC---------CACCTCAGTGCTCTGTTTATCTGA-GGACTTT-GACATAGTAATACTTATGTGCTCTTTGGTTAACAT--AGCA-CAGGCGTTGTTT--------------------CATGTATTATTTAGAG----GGT-----TTTGAGGTGAGAACCTGATTC-------------------TGT-TAA-CATGCTAGTGAGGCTTCAGAAGCATTACTGATTGC---AAGTGCGTCAGAAGCTGTGGCAT---GTTT-AAGATTTGTGAAGACTCTCT-GGGCGG-CCCTGAAGTTACCTCCCGCTGTTTCTGTTGCAGGACTTTTTGTGTCAAATAG-AAAGGTACTGTAGGCAGTGCCATCTGACCACACCGATCACGTTTCCTCCGGAGCATCCCG-TGGAAGAGGTCGGTCGCTTGCTGTT-ATGTTGCCTCTTAAAACAT-GAAGATTTAGGTATGGAGCTCAATATCTGTGTACTTTAG-CTACACTGC
i macNem1.NW_012011934v1    C 0 I 1
s cerAty1.NW_012001462v1       452525 784 +   4116138 AATGATGCT-GA--ATTTCACCTT-CTAAATTGAGTGATCAGTTGAGCA-TC----tttttttttctttttt-tagtatttatt-ttG-AGTTGTG--CACTTGAGTTTCTCTTTCATGTTTGCGTGTGCAT-TTTCTAGAGTGGCTTCAGTCATCCATCTTCTCTGGAGGCCTGCAGACTAGCCAGATCCACTACAGCTACAACGAGGAGAAAGATGAGGA-CCACTGCAGCTCCCCAGGGGG--CACACCTGCCAGCAAATCTCGACTCTGCTCCCACAGACGGGCCCTGGGGGACCATTCCCAGGCTTTTCTGCAAGCCATTGC-AGACAATAACATTCAGGATCACAA-CGTGAAGGTGAGCT---------------------------AGGCCTCCCCCCACTGC---------CACCTCAGTGCTCTGTTTATCTGA-GGACTTG-GACATAGGAATACTTATGTGCTCTTTGGTTAACAT--AGCA-CAGGCGTTGTTT--------------------CATGTATTATTTGGAG----GGT-----TTTGAGGTGAGAACCTGATTC-------------------TGT-TAA-CATGCTAGTGAGGCTTCAGAAGCATTACTGATTGC---AAGTGTGTCAGAAGCTGTGGCAT---GTTT-AAGATTTGTGAAGACTCTCT-GGGCGG-CCCTGAAGTTACCTCCCGCTGTTTCTGTTGCAGGACTTTTTGTGTCAAATAG-AAAGGTACTGTAGGCAGTGCCATCTGACCACACCGATCACGTTTCCTCCTGAGCATCCTG-TGGAAGAGGTCGGTCGCTTGCTGTT-ATGTTGCCTCTTAAAACAT-GAAGATTTAGGTATGGAGCTCAATATCTGTGTACTTTAG-CTATACTGC
i cerAty1.NW_012001462v1    C 0 I 1
s chlSab2.chr26              53884528 788 +  58131712 AATGATGCT-GA--ATTTCACCTT-CTAAATTGAGTGATCAGTTGAGCA-TCtttttttttttttctttttt-tagtatttatt-ttG-AGTTGTG--CACTTGAGTTTCTCTTTCATGTTTGCATGTGCAT-TTTCTAGAGTGGCTTCAGTCATCCATCTTCTCTGGAGGCCTGCAGACTAGCCAGATCCACTACAGCTACAACGAGGAGAAAGATGAGGA-CCACTGCAGCTCCCCAGGGGG--CACACCTGCCAGCAAATCTCGACTCTGCTCCCACAGACGGGCCCTGGGGGACCATTCCCAGGCATTTCTGCAAGCCATTGC-AGACAATAACATTCAGGATCACAA-CGTGAAGGTGAGCT---------------------------AGGCCTCCCCTCACTGC---------CACCTCAGTGCTCTGTTTATCTGA-GGACTTT-GACATAGGAATAATTATGTGCTCTTTGGTTAACAT--AGCA-CAGGCGTTGTTT--------------------CATGTATTATTTGGAG----GGT-----TTTGAGGTGAGAACCTGATTC-------------------TGT-TAA-CATGCTAGTGAGGCTTCAGAAGCATTACTGATTGC---AAGTGTGTCAGAAGCTGTGGCAT---GTTT-AAGATTTGTGAAGACTCTCT-GGGCGG-CCCTGAAGTTACCTCCCACTGTTTCTGTTGCAGGACTTTTTGTGTCAAATAG-AAAGGTACTGTAGGCAGTGCCATCTGACCACACCGATCACGTTTCCTCCTGAGCATCCCG-TGGAAGAGGTCGGTCGCTTGCTGTT-ATGTTGCCTCTTAAAACAT-GAAGATTTAGGTATGGAGCTCAATATCTGTGTACTTTAG-CTATACTGC
i chlSab2.chr26             C 0 I 1
s manLeu1.NW_012102332v1       505334 781 -   3636681 AATGATGCT-GA--ATTTCACCTT-CTAAATTGAGTGATCAGTTGAGCA-TC----tttttttttctttttt-tagtatttatt-ttG-AGTTGTG--CACTTGAGTTTCTTTTTCATGTTTGCGTGTGCAT-TTTCTAGAGTGGCTTCAGTCATCCATCTTCTCTGGAGGCCTGCAGACTAGCCAGATCCACTACAGCTACAACGAGGAGAAAGATGAGGA-CCACTGCAGCTCCCCAGGGGG--CACACCTGCCAGCAAATCTCGACTCTGCTCCCACAGACGGGCCCTGGGGGACCATTCCCAGGCATTTCTGCAAGCCATTGC-AGACAATAACATTCAGGATCACAA-CGTGAAGGTGAGCT---------------------------AGGCCTCCCCCCACTGC---------CACCTCAGTGCTCTGTTTATCTGA-GGACTTG-GACATAGGAATACTTATGTGCTCTTTGGTTAACAT--AGCA-CAGGCGTTGTTT--------------------CATG---TATTTGGAG----GGT-----TTTGAGGTGAGAACCTGATTC-------------------TGT-TAA-CATGCTAGTGAGGCTTCAGAAGCATTACTGATTGC---AAGTGTGTCAGAAGCTGTGGTAT---GTTT-AAGATTTGTGAAGACTCTCT-GGGCGG-CCCTGAAGTTACCTCCCGCTGTTTCTGTTGCAGGACTTTTTGTGTCAAATAG-AAAGGTACTGTAGGCAGTGCCATCTGACCACACCGATCACGTTTCCTCCGGAGCATCCCG-TGGAAGAGGTCGGTCGCTTGCTGTT-ATGTTGCCTCTTAAAACAT-GAAGATTTAGGTATGGAGCTCACTATCTGTGTACTTTTG-CTATACTGC
i manLeu1.NW_012102332v1    C 0 I 1
s colAng1.NW_012115278v1       484378 784 -   4457520 AATGATGCT-GA--ATTTCACCTT-CTAAATTGAGTGATCAGTTGAGCA-TC----ttttttttcttttttt-tagtatttatt-ttG-AGTTGTG--CACTTGAGTTTCTCTTTCATGTTTGCGTGTGCAT-TTTCTAGAGTGGCTTCAGTCATCCATCTTCTCTGGAGGCTTGCAGACTAGCCAGATCCACTACAGCTACAACGAGGAGAAAGATGAGGA-CCACTGCAGCTCCCCAGGGGG--CACACCTGCCAGCAAATCTCGACTCTGCTCCCACAGACGGGCCCTGGGGGACCATTCCCAGGCATTTCTGCAAGCCATTGC-AGACAATAACATTCAGGATCACAA-CGTGAAGGTGAGCT---------------------------GGGCCTCCCCCGACTGC---------CACCTCAGTGCTCTGTTTATCTGA-GGATTTT-GACATAGGAATACTTATGTGCTCTTTGGTTAACAT--AGCA-CAGGCGTTGTTT--------------------CATGTATTATTTGGAG----GGT-----TTTGAGGTGAGATCCTGATTC-------------------TGT-TAA-CATGCTAGTGAGGCTTCGGAAGCATTACTGATTGC---AAGTGCATCAGAAGCTGTGGCAT---GTTT-AAGATTTGTGAAGACTCTCT-GGGCGG-CCCTGAGGTTACCTCCAGCTGTTTCCGTTGCAGGACTTTTTGTGTCAAATAG-AAAGGTACTGTAGGCAGTGCCATTTGACCACACCGATCACGTTTCCGCCTGAGCATCCCG-TGGAAGAGGTCGGTCGCTTGCTGTT-ATGTTGCCTCTTAAAACAT-GAAGATTTAGGTATGGAGCTCAATATCTGTGTACTTTAG-CTACACTGC
i colAng1.NW_012115278v1    C 0 I 1
s calJac3.chr6              154516210 781 - 158406734 AGTGATGCT-GA--ATTCCACCTT-CTAAATTGAGTGTGCAGTGGAGCA-TC---------TTTTTTGTTTT-TAGTATTTATT-TTG-AGCCGTG--CGCTGGAGTTTCTCTTTCATGTTTGTGTGTGTGT-TTTCTAGAATGGCTTCAGTCGTCCATCTTCTCTGGAGGTCTGCAGACCAGCCAGATCCACTACAGCTACAATGAGGAGAAAGACGAGGA-CCACTGCAGCTCTCCAGGGGG--CACCCCTGCCAGCAAGTCTCGACTCTGCTCCCACAGACGGGCCCTGGGCGACCATTCCCAGGCGTTTCTGCAAGCCGTCGC-AGACAATAACATTCAGGATCACAA-CGTGAAGGTGAGTG---------------------------AGGCCTCTCCGCACTGC---------CACCTCAGTGTTCTGTTTATCTGA-GGACCTG-GACACAGGAATACCTATGTGCACTTTGCCTAACATATAGCA-CAGACTTTGTTT--------------------CTTGTATTATTTGGAG----AGT-----TTTGAGGTGAGAACCTGATTC-------------------TGT-TAA-CATGCTAGTGAGACTTCAGAAGCATTACTGATTGC---GAGTGCATCAGAAGCTGTGGAAT---GTTT-AGGATTTGTGAAGACTCAGT-GGGTGG-CCCTGAAGTTACCTCCAGCTGTTTCTGTTTCAGGACTTTTTGTGTCAAATAG-AAAGGTACTGTAGGCAGTGCCACTTGACCACACCGATCACGTTTCCCCCCGAGCATCCCG-TGGAAGAGGTCGGTCGCTTGCTGTT-GTGTTGCCTCTTAAAACAT-GAAGATTTAGGTATGGAACTCATTGTCTGTGTGCTTTAT-CTATACTGC
i calJac3.chr6              C 0 I 1
s saiBol1.JH378292             348290 780 -   2682657 AGTGATGCT-GA--ATTCCACTTT-CTAAATTGAGTGTGCAGTTGAGCG-TC---------TTTTTTGTTGG-TTGTATTTATT-TTG-AGCTGTG--CGCTGGAGTTTCTCTTTCATGTTTGTGTGTGCCT-TTTCTAGAATGGCTGCAGTCGTCCATCTTCTCTGGAGGCCTGCAGACCAGCCAGATCCACTACAGCTACAACGAGGAGAAAGACGAGGA-CCACTGCAGCTCTCCAGGGGG--CACCCCTGCCAGCAAGTCTCGACTCTGCTCCCACAGACGGGCCCTGGGCGACCATTCCCAGGCGTTCCTGCAAGCCGTCGC-AGACAATAACATTCAGGATCACAA-TGTGAAGGTGAGTG---------------------------AGGCCTCCCCGCACTG----------CACCTCGGCGTTCTGTGTGTCTGA-GGACTGG-GACGTAGGAATACCTATGTGCGCTTTGCCTGACGTGTAGCA-CAGGCTGTGTTT--------------------CATGTATTATTTGGAG----AGT-----TTGGAGGTGAGAACCTAATTC-------------------TGT-TAA-CATGCTAGTGAGGCTTCAGAAGCGTTACTGACTGC---AGGTGCATCAGAACCTGTGGCAT---GTTT-AGGATTTGTGAAGACTCACT-GGGTGG-CCCTCAAGTTACCTCCAGCTGTTTCTGTTTCAGGACTTTTTGTGTCAAATAG-AGAGGTACTGTAGGCAGTGCCACTTGACCACACCGATCACGTTTCCCCCCGAGCATCCCG-TGGAAGAGGTCGGTCGCTTGCTGTT-ATGTTGCCTCTTAAAGCAT-GAAGATTTAGGTATGGAACTCCTTGTCTGTGTACTTCAG-CTGTGCTGC
i saiBol1.JH378292          C 0 I 1
s cebCap1.NW_016107707v1       372533 780 -   2086007 AGTGATGCT-GA--GTTCCACCTT-CTAAATTGAGTGTGCAGTTGAGCA-TC---------TTTTTTGTTTT-TAGTATTTATT-TTG-AGCTGTG--CACTGGAGTTTCTCTTTCACGTTTGTGTGTGCAT-TTTTCAGAATGGCTTCAGTCGTCCATCTTCTCTGGAGGCCTGCAGACCAGCCAGATCCACTACAGCTACAACGAGGAGAAAGATGAGGA-CCACTGCAGCTCTCCAGGGGG--TACCCCTGCCAGCAAGTCTCGACTCTGCTCCCACAGACGGGCCCTGGGCGACCATTCCCAGGCGTTTCTGCAAGCCGTCGC-AGACAATAACATTCAGGATCACAA-CGTGAAGGTGAGTG---------------------------AGGCCTCCCGGCACTG----------CACCTCAGTGTTGTGTGTATCTGA-GGACTTG-GACATAGGAATACCTATGTACGCTTTGCCTAACATATAGCA-CAGACTTTGTTT--------------------CATGTATTATTTGGAG----AGT-----TTTGAGGTGAGAACCTGATTC-------------------TGT-TAA-CATGCTAGTGAGGCTTCAGAAGCATTACCGATTGC---AAGTGCATCAGAAGCTGTGGCAT---GTTT-AGGATTTGTGAAGACTCACT-GGGTGA-CCCTCAAGTTACCTCCAGATGTGTCTCTTTCAGGACTTTCTGTGTCAAATAG-AGAGGTACTGTAGGCAGTGCCACTTGACCACACCGATCACGTTTCCCCCCGAGCATCCCG-TGGAAGAGGTCGGTCGCTTGCTGTT-ATGTTGCCTCTTAAAACAT-GAAGATTTAGGTATGGAACTCATTGTCTGTGTACTTCAG-CTGTGCTGC
i cebCap1.NW_016107707v1    C 0 I 1
s aotNan1.NW_018503298v1       435660 781 +   3831555 AGTGTTGCT-GA--ATTCCACCTT-CTAAATTGAGTGTGCAGTTGAGCA-TC---------TTTCTTGTTTT-TAGTATTTATT-TTG-AGCTGTG--CACTGGAGTTTCTCTTTGATGTTTGTGTGTGCAT-TTTCTAGAATGGCTTCAGTCGTCCATCTTCTCTGGAGGCCTGCAGACCAGCCAGATCCACTACAGCTACAACGAGGAGAAAGACGAGGA-CCACTGCAGCTCTCCAGGGGG--CGCCCCTGCCAGCAAGTCTCGACTCTGCTCCCACAGACGGGCCCTGGGCGACCATTCCCAGGCATTTCTGCAAGCCGTCGC-AGACAATAACATTCAGGATCACAA-TGTGAAGGTGAGCG---------------------------AGGCCTCCCCGCACTGC---------CACCTCAGTGTTATGTTTATCTGA-GGACTTG-GACATAGGAATACCTATGTGTGCTTTGCCTAACATAGAGCA-CAGACTTTGTTT--------------------CATGTATTATTTGGAG----AGT-----TTTGAGGTGAGAACCTGATTC-------------------TGT-TAA-CATGTTAGTGAGACTTCAGAAGCATTACCGATTGC---AAGTGCATCAGAAGCTGTGGCAT---GTTT-AGGATTTGTGAAGACTCACT-GGGTGG-CCCTGAAGTTACCTCCAGCTTTTTCTGTTTCAGGACTTTTTGTGTCAAATAG-AAAGGTACTGTAGGCAGTGCCACTTGACCACACCGATCACGTTTCCCCCCGAGCATCCTG-TGGAAGAGGTCGGTCGCTTGCTGTT-ATGTTGCCTCTTAAAACAT-GAAGATTTAGGTATGGAACTCATTGTCTGTGTACTTCAG-CTATACTGC
i aotNan1.NW_018503298v1    C 0 I 1
s micMur3.chr9              116291006 779 + 116334831 AATGATGTT-AA--ATTTTACCTT-GCAAAT-AAGTATTCACTTGAGCA-TC-------------TTTTTTT-CTGTATTTATTCCTG-AGTAGTA--CACTCGAGTTTCTCTTTAATGTTTGCCTGTGCAT-TTTCTAGAGTGGCTTCAGTCATCCATCTTCTCTGGAGGCCTGCAGACCAGCCAGATCCATTACAGCTACAATGAAGAGAAAGATGAGGA-CCACTGCAGCTCTCCTGGGGG--TACACCTGCCAGCAAATCTCGACTCTGCTCCCACAGACGGGCCTTGGGTGACCATTCCCAGGCATTCCTGCAGGCCATCGC-TGACAATAATATCCAGGATCACAA-TGTGAAGGTGAGCT---------------------------AGATCTCCCCA-ATTAC---------CGACTCATTATTCTGTCTAGCTGA-GGAGTTT-GACATGGGAATACTTACATGCACTTTTATTAATGT--AGCA-CAGACTTTGTTT--------------------CACATATTGTTGAGGG----GGTTGG-TTTTGAGGTGAGAAGCTAGTTT-------------------TGT-TCAACTTGCCAGTGAGGCTTTAGAAGCATTGTTAATTGC---AAGTGTATCAGAAGCTGTGGCAT---GTTT-AGGATTCATGAAAACTCACT-GGGTGG-CTCTGAAGTTACCTCTAGCCCTTTCTGTTGCAGGACTTTCTGTGTCAAATTG-AAAGGTACTGTAGGCAGTGCCACTTGACCACGCCAATCACGTTTCCTCCTGAGCATCCAG-TGGAAGAGGTTGGCCGCTTGCTGTT-ATGTTGCCTCTTAAAACAT-GAAGATTTAGGTATGGAGCTTGGTATCTGTGTGTATTAG-CCATACTGT
i micMur3.chr9              C 0 I 52
s proCoq1.NW_012148396v1     13507010 799 +  16154928 AATGATGCT-AA--GTTTCACCTT-GCAAAT-AAGTATTCACTTGAGCA-TC-------------TTTTTTT-CTGTATTTATTCCTG-AGCAGTG--CACTTGAGTTTCTCTTTAATGTTTGCCTGTGCAT-TTTCTAGAGTGGCTTCAGTCGTCTATCTTCTCTGGAGGCCTGCAGACCAGCCAGATCCATTACAGCTACAACGAAGAGAAAGACGAGGA-CCACTGCAGCTCTCCTGGGGG--TACACCTGCTAGCAAATCTCGACTCTGTTCCCACAGATGGGCCCTAGGCGACCATTCCCAGGCATTCCTGCAGGCCATCGC-TGACAATAACATCCAGGATCACAA-TGTGAAGGTGAGGT---------------------------AAATCTCCCCCTATTAC---------TGACTCATTATTCCGTCTAGCTGA-GGAATTT-GACATGGGAATACTTACATGTACTTTTATTAACAT--AGCA-CAGACTTTGTTG--------------------CACATATTTTTGGGAG----GGTTGG-TTTTGAGGTGAGAAGCTGGTTTTGAGGTGAGAAGCTGGTTCTGT-TCAGCTTGCCAATGAGGCTTTAGAAGCATTGTTAATTGC---AGGTGTATCAGAAGCTGTGGCAC---ATTT-AGGATTCATGAAGACTCACT-GGGTGG-CTCTGAAGTTACCTCCAGCCATTTCTGTTGCAGGACTTTCTGTGTCAAATTG-AAAGGTACTGTAGGCAGTGCCACTTGACCACGCCAATCACCTTTCCTCCTGAGCATCCTG-TGGAAGAGGTCGGCCGCTTGCTATT-ATGTTGCCTCTTAAAACAT-GAAGATTTAGGTATGGAGCTTGATAACTGTGTGTTTTAG-CCATACTGT
i proCoq1.NW_012148396v1    C 0 I 1
s otoGar3.GL873689             461065 775 +   3845361 ACTGATGCG-GAATATTTCACATT-CTAAATCAAGTATTTACTCGAGCA-TC-------------TTTTCTT-CCATGTTTACTCCTG-AGTAGTG--CACTCGAGTTTCTCTTTAATATTTGCCTGTGCAT-TTT-TAGAGTGGCTTCAGTCATCCATCTTCTCTGGGGGCCTACAGACCAGCCAGATCCACTACAGCTATAATGAGGAGAAAGATGAGGA-CCACTGCAGCTCTCCTGGGGG--CACACCTGCCAGCAAATCTCGACTCTGCTCCCACAGACGAGCACTGGGCGACCATTCCCAGGCATTCCTGCAGGCCATTGC-TGACAATAACACCCAGGACCACAA-TGTGAAGGTGAGCT---------------------------AGAACCCTCCCCACCCC---------CAA-TGAGTATTCTGTCTGGCTGA-GAAGTTT-GACATGGGAATATCCACATGCACTTCAGTTAATGT--AGCA-CAGGCTTTGTTT--------------------CACA---TGTTGGGAG----GGTTGG-CTTTGAGGTGAGAGACTGGTTC-------------------TGC-TTA-CTTCCCAGGAAGGCTAGAGAAGCATTACTAATTGC---CAGCAGATCAGAGGCC-TGGCAC---ATCT--GGATTTGTCAGGGCTCACT-GGGTAC-CTCTGAAGTCACCTCCAGTCATTTCTGTTGCAGGACTTTCTGTGTCAGATCG-AGAGGTGCTGTCGGCAGTGCCACTTGACCACACCTATCACGTTTCCTCCGGAGCACCCTG-TGGAGGAGGTTGGCCGCTTGCTGCT-CTGTTGTCTCTTAAAACAC-GAGGACTTAGGTATGGAGCCTGATGCCCACGTGTCTGAG-CTGTGCTGT
i otoGar3.GL873689          C 0 I 6
s mm10.chr7                  56134469 732 + 145441459 AATGCTGCT-GA--ATTTCATTTT-TGAAATTGAGTATTCAGTTCAGGA-TT----TTATCTTATTTTTCCT-GTGTGTTTATTTCTG-AAGAGTT--TATTTCAGTTTCTCTGCAATGAATACTTATACAT-TTTCTAGAGTGGCTGCAGTCATCGATTTTTTCTGGGGGTCTGCAGACCAGCCAGATTCACTACAGCTACAATGAAGAGAAAGATGAGGA-CCACTGTAGCTCTCCTGGGGG--CACACCCATCAGCAAGTCCCGACTGTGTTCTCACAGATGGGCCTTGGGTGATCATTCTCAGGCTTTCCTGCAAGCCATTGC-AGACAATAACATCCAGGACTACAA-TGTGAAGGTGAGCT---------------------------AGATT--------CTTC---------TGACTTAGCATTCT-----------GTATCTT------------------------------CAACAT--AGCA-CA------GCTT--------------------TGTGTGTTATGTGGAGATATGGT-----ATTGAGGTGATAAATTGATTC-------------------TGC-ATT-CATAAAAGTGAGGTATAG-----ATCACCTGTTGCAAAAAGTTGGGTAGAAGCTGTGGTGT---GTT--GGGGTTTGTGAAGATTTACT--CATGG-CTCTGAGGTTATCTCTATCCCTTCTTCTTGCAGGACTTTCTGTGTCAAATTG-AAAGGTACTGTAGACAGTGCCACTTGACTACACCCATCACGTTTCCTCCTGAGCATCCTG-TGGAAGAGGTTGGCCGTCTTCTGTT-ATGCTGCCTCTTAAAACAT-GAAGATTTAGGTACAGACCTTAGTATTCATGTGTTTTAA-TTACATTGT
i mm10.chr7                 I 860 I 1
s canFam3.chr3               60036251 774 -  91889043 GGTGATGCT-GA--ATTTCTCCTC-CTAAATCAGCTATTCAGTTCTTTA-TC------------TTTTATTT-CAATATTTATTTCTG-AATAGTGCACACTCAAGTTTCTTTTTAATGTTTGCATATGTAT-TTTCTAGAGTGGCTTCAGTCATCCATCTTCTCTGGAGGCCTACAGACCAGCCAGATCCACTATAGCTATAATGAGGAGAAAGACGAGGA-CCATTGTAGTTCTCCTGGGGG--CACTCCTGCCAGCAAGTCCCGACTCTGCTCCGACAGACGGGCTCTGGGTGACCATTCTCAGGCCTTCCTGCAAGCTATTGC-TGATAATAACATACAGGATCACAA-TGTGAAGGTGAG-------------------------------GCCTTC--------------------------------GTTTACTTTA-GAACTTT-GATGTGTGAATACCTTTATGTTTTTTGGTTGGCTT--AGCA-CAGACTTCTTTTTTCTTAGCACAGACTTTATTTACATATTATTTGTGG----GGCTGATTTTTGAGGTAAGAGGCTGGTTT-------------------GGTACAA-TATGCCAGTGATGTTTTAGAAGCATTGCTGATTGC---GAGTATATCAGAAATTGTGGCATGTAGTTT-GGAATTCGTAATGGCATGTTAGGGTAG-CTCTGAAGTTACCTCCAGCTGTTTCCATTACAGGACTTTTTGTGTCAAATAG-AAAGGTACTGTAGGCAGTGCCACTTGACCACACCAATCACATTTCCTCCTGAGCATCCTG-TGGAAGAGGTTGGCCGCTTACTCTT-ATGTTGCCTTTTAAAGCAT-GAAGATTTAGGTATGAAGCTTGATATC--------TTAG-CTATACTAT
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             423364 805 +    563711 AATGATTCT-AA--ATTTCAACTT-CTCAAT-----ATTGAGTTTAGCA-TC--------------TTTTTT-GAAAGCTTATTTCTG-AGTAGTA--CACTCAGAGTTCCCTTCAGTGCCTGTGTCTGTAT-TTTCTAGAGTGGCTTCAGTCATCTATCTTCTCTGGGGGCCTGCAGACCAGCCAGATCCACTATAGCTACAACGAGGAGAAAGATGAGGA-CCACTGTAGCTCCCCCGGTGG--CACTCCTGCCAGCAAATCCCGGCTATGCTCCCACAGACGGGCCCTGGGTGACCATTCTCAGGCATTCCTGCAAGCCATCGC-CGACAGTAACATTCAGGACCACAG-CGTGAAGGTGCGCTCATTGCCCAGGATCAGCCGCACAGGACAACACTCACCTTACCACACTCTGACTCTCCATAGCCTTCTCTTCCTCTTA-GGATTTT-GACTTCTGAATATATTCAAGTCCTTTGATTAATTT--AGTT-TGAAC-TTGTGT--------------------TAAATATTATTTGGAGGGATGGT-----TTTGAGGTGAAAAGCTGATTT-------------------CGT-TCA-CT-----GTACAGTTTCAGAAGCATTGCTGATGGC---AAGTGCATCAGAAGCTGTGGCAT---GTGT-AGTATTCATGAAGATGTACTAAGGTGA-CTCTGAAAAGACCTCTGGCTATTTCTGTTGCAGGACTTTCTGTGTCAAATAG-AAAGGTACTGCAAGCAGTGCCACTTAACCACACCAATCACATTTCCTCCTGAGCATCCTG-TGGAAGAGGTTGGCCGCTTGCTGTT-ATGTTGTCTCTTAAAGCAT-GAAGATTTAGGTATGAAGTTATATATTGATGTATTTTAC-TTGTACTGT
i dasNov3.JH562051          C 0 I 1

a score=636148.000000
s hg38.chr15_KI270851v1_alt    186874 53 +    263054 GATTCCTCGACTAACCTGTGGTACGTATTCATTCCTTCACTGCCCTTCTTTTA-
s panTro5.chr15              73799838 53 -  83230942 GATTCCTCGACTAACCTGAGGTACATATTCATTCCTTCCCTGCCCTTCTTTTA-
i panTro5.chr15             I 1 C 0
s panPan2.chr15              74103241 53 -  99763055 GATTCCTCGACTAACCTGAGGTACATATTCATTCCTTCCCTGCCCTTCTTTTA-
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01000141v1       152066 53 -    281578 GATTCCTCGACTAACCTGCGGTACATATTCATTCCTTCCCTGCCCTTCTTTTA-
i gorGor5.CYUI01000141v1    I 1 C 0
s nomLeu3.chr6               71010946 53 + 121039945 GATTCCTCGACTAACCTGCGGTACATATTCATTCCTTCCCTGCCCTTCTTTTA-
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr7              164320816 53 - 169600520 GATTCCTCGACTAACCTGCGGTATATATTCATTCCTTCCCTGCCCTTCTTTTA-
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              165641779 53 - 171882078 GATTCCTCGACTAACCTGCGGTATATATTCATTCCTTCCCTGCCCTTCTTTTA-
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011934v1       496231 53 +   2379783 GATTCCTCGACTAACCTGTGGTATATATTCATTCCTTCCCTGCCCTTCTTTTA-
i macNem1.NW_012011934v1    I 1 C 0
s cerAty1.NW_012001462v1       453310 53 +   4116138 GATTCCTCGACTAACCTGCGGTATATATTCATTCCTTCCCTGCCCTTCTTTTA-
i cerAty1.NW_012001462v1    I 1 C 0
s chlSab2.chr26              53885317 53 +  58131712 GATTCCTCGACTAACCTGTGGTATATATTCATTCCTTCCCTGCCCTTCTTTTA-
i chlSab2.chr26             I 1 C 0
s manLeu1.NW_012102332v1       506116 53 -   3636681 GATTCCTCGACTAACCTGCGGTATATATTCATTCCTTCCCTGCGCTTCTTTTA-
i manLeu1.NW_012102332v1    I 1 C 0
s colAng1.NW_012115278v1       485163 53 -   4457520 GATTCCTTGACTAACCTGCGGTATATATTCATTCCTTCCCTGTCCTCCTTTTA-
i colAng1.NW_012115278v1    I 1 C 0
s calJac3.chr6              154516992 47 - 158406734 GACTCCTCAACCAAGCCGTGGTA------CATTCCTTCCCTGCCCTTGTCTTA-
i calJac3.chr6              I 1 C 0
s saiBol1.JH378292             349071 53 -   2682657 GATTCCTCAACCAGGCTGTGGGACACATTCATTCCTTCCCTGCCCTTGCCTTA-
i saiBol1.JH378292          I 1 C 0
s cebCap1.NW_016107707v1       373314 53 -   2086007 GGTTCCTCAACCAAGCTGTGGTACACATTCATTCTTTCCCTGCCCTTGTCTTA-
i cebCap1.NW_016107707v1    I 1 C 0
s aotNan1.NW_018503298v1       436442 53 +   3831555 GATTCCTCAGCCAGGCTGTGGTACACATTCATTCCTTCCCTGCCCTTGTCTTA-
i aotNan1.NW_018503298v1    I 1 C 0
s proCoq1.NW_012148396v1     13507810 51 +  16154928 GGTCCTTTGACTTACATGCCATACATATTCATTCCCACCCTGCCCTTCTTT---
i proCoq1.NW_012148396v1    I 1 C 0
s otoGar3.GL873689             461846 49 +   3845361 CATCCTGTGACTGACATGTCCCATG-AGTCTTTCCCA-CCTGCCCGTCTTC---
i otoGar3.GL873689          I 6 C 0
s mm10.chr7                  56135202 53 + 145441459 GACCTTTCAAATGGCATGTGGTATACATTAATTCCTACCTTGCCTTTTCACAA-
i mm10.chr7                 I 1 C 0
s canFam3.chr3               60037026 53 -  91889043 AATTTTTTGACTGACATGCAATATGCATTCATTCTTACCTTGCCCCTTGTTTA-
i canFam3.chr3              I 1 I 1
s dasNov3.JH562051             424170 52 +    563711 GATCTCTTGACTAATGTGCAATACTCATTCATTCCTCCCCTGCCC--CTTTTAA
i dasNov3.JH562051          I 1 C 0
e micMur3.chr9              116291785 52 + 116334831 I

a score=8304851.000000
s hg38.chr15_KI270851v1_alt    186927 446 +    263054 AATGTCTTTTTACAGGTCATGTGGCATTATCTTTAGTTCATGCAGGTGCACTTGGTATTGAGCAAGTAAAGCACAGAACGTTGCCTAAGTCAGTGGTGGATGTTTGTAGAGTTGTCTACCAAGCAAAATGTTCGCTCATTAAGGTGA-TAGA---TTTTAATTCTTTTTATTCTGTGCTTTGCAGACAGTTGCTGAAATATTTGTTGTTAAAGTTGTCTTTT--CCTGGTTAACTTTGCAGACTCATCAAGAACAGGGCCGTTCTTACAAGGAGGTCTGCGCTCCTGTCATCGAA-CGT-TTGAGATTCCTCTTTAATGAATTGAGACCTGCTGTTTGTAATGACCTCTCTATAATGTCTAAGTTTAAATTGTTAAGTTCTTTGCCCCATTGGAGGAGGATAGCTCAGAAGATAATTCGAGAACCAAGG-AAAAAGAGAGGTAAGAATGTAAAA-G
s panTro5.chr15              73799891 440 -  83230942 AATGTCTTTTTACAGGT-ATGTGGCATTATCTT-AGTTCATGCAGGTGCACTTGCTAT-GAGCAAGTAAAGCACAGAACGTTGCCTAAGTCAGTGGGGGATGTTTGTAGAGTTGTCTAC-AAGCAAAATGTTCGCTCATTAAGGTGA-TAGA---TTTTAATTCTTTTTATTCTGTGCTTTGCAGACAGTTGCTGAAATATTTTGTTTTAAAGTTGTCTTTT--CCTGGTTAACTT-GCAGACTCATCAAGAACAGGGCCGTTCTTCACAGGAGGTCTGCGCTCCTGTCATCGAAACGTGTTGAGATTCCTCTTTAATGA-TTGAGACCTGCTGTTTGTAATGACCTCTCTATAATGTCTAAGTTTAAATTGTTAAGTTCTTTGCCCCGTTGGAGGAG-ATAGCTCAGAAGATAATT-GAGAACGAAGG-AAAAAGAGAGGTAAGAATGTAAAA-G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74103294 444 -  99763055 AATGTC-TTTTACAGGTCATGTGGCATTATCTTTAGTTCATGCAGGTGCACTTGGTATTGAGCAAGTAAAGCACAGAACGTTGCCTAAGTCAGTGGTGGATGTTTGTAGAGTTGTCTACCAAGCAAAATGTTCGCTCATTAAGGTGA-TAGA---TTTTAATTCTTTTTATTCTGTGCTTTGCAGACAGTTGCTGAAATATTTGTTGTTAAAGTTGTCTTTT--CCTGGTTAACTTTGCAGACTCATCAAGAACAGGGCCGTTCTTACAAGGAGGTCTGCGCTCCTGTCATCGAA-CGT-TTGAGATTCCTCTTTAATGAATTGAGACCTGCTGTTTGTAATGACCTCTCTATAATGTCTAAGTTTAAATTGTTAAGTTCTTG--CCCGTTGGAGGAGGATAGCTCAGAAGATAATTCGAGAACGAAGGAAAAAAGAGAGGTAAGAATGTAAAA-G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       152119 446 -    281578 AATGTCTTTTTACAGGTCATGTGGCATTATCTTTAGTTCATGCAGGTGCACTTGGTATTGAGCAAGTAAAGCACAGAACGTTGCCTAAGTCAGTGGTGGATGTTTGTAGAGTTGTCTACCAAGCAAAATGTTCGCTCATTAAGGTGA-TAGA---TTTTAATTCTTTTTATTCTGTGCTTTGCAGACAGTTGCTGAAATATTTGTTGTTAAAGTTGTCTTTT--CCTGGTTAACTTTGCAGACTCATCAAGAACAGGGCCGTTCTTACAAGGAGGTCTGCGCTCCTGTCATCGAA-CGT-TTGAGATTCCTCTTTAATGAATTGAGACCTGCTGTTTGTAATGACCTCTCTATAATGTCTAAGTTTAAATTGTTAAGTTCTTTGCCCCGTTGGAGGAGGATAGCTCAGAAGATAATTCGAGAACGAAGG-AAAAAGAGAGGTAAGAATGTAAAA-G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71010999 446 + 121039945 AATGTCTTTTTGCAGGTCATGTGGCATTATCTTTAGTTCATGCAGGTGCACTTGGTATTGAGCAAGTAAAGCACAGAACGTTGCCTAAGTCAGTGGTGGATGTTTGTAGAGTTGTCTACCAAGCAAAATGTTCGCTCATTAAGGTGA-TAGA---TTTTAATTCTTTTTATTCTGTGCTTTGCAGACAGTTGCTGAAATATTTGTTGTTAAAGTTGTCTTTT--CTTGGTTAACTTTGCAGACTCATCAAGAACAGGGCCGTTCTTACAAGGAGGTCTGCGCTCCTGTCATCGAA-CGT-TTGAGATTCCTCTTTAATGAATTGAGACCTGCTGTTTGTAATGACCTTTCTATAATGTCTAAGTTTAAATTGCTAAGTTCTTTGCCCCGTTGGAGGAGGATCGCTCAGAAGATAATTCGAGAACGAAGG-AAAAAGAGAGGTAAGAATGTAAAG-G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164320869 446 - 169600520 AATGTCTTTTTACAGGTCATGTGGCATTATCTTTAGTTCATGCAGGTGCACTTGGTATTGAGCAAGTAAAGCACAGAACGTTGCCTAAGTCAGTGGTGGATGTTTGTAGAGTTGTCTACCAAGCAAAATGTTCACTCATTAAGGTGA-CAGA---TTTTAATTCTTTTTATTCTGTGCTTTGCAGACAGTTGCTGAAATATTTGTTGTTAAAGTTGTCTTTT--CCTGGTTAACTTTGCAGACTCATCAAGAACAGGGCCGTTCTTACAAGGAGGTCTGCGCTCCTGTCATCGAA-CGT-TTGAGATTCCTCTTTAATGAATTGAGACCTGCTGTTTGTAATGACCTCTCTATAATGTCTAAGTTTAAGTTGTTAAGTTCTTTGCCCCGTTGGAGGAGGATAGCTCAGAAGATAATTCGAGAACGAAGG-AAAAAGAGAGGTAAGAATGTAAAA-G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165641832 446 - 171882078 AATGTCTTTTTACAGGTCATGTGGCATTATCTTTAGTTCATGCAGGTGCACTTGGTATTGAGCAAGTAAAGCACAGAACGTTGCCTAAGTCAGTGGTGGATGTTTGTAGAGTTGTCTACCAAGCAAAATGTTCACTCATTAAGGTGA-CAGA---TTTTAATTCTTTTTATTCTGTGCTTTGCAGACAGTTGCTGAAATATTTGTTGTTAAAGTTGTCTTTT--CCTGGTTAACTTTGCAGACTCATCAAGAACAGGGCCGTTCTTACAAGGAGGTCTGCGCTCCTGTCATCGAA-CGT-TTGAGATTCCTCTTTAATGAATTGAGACCTGCTGTTTGTAATGACCTCTCTATAATGTCTAAGTTTAAGTTGTTAAGTTCTTTGCCCCGTTGGAGGAGGATAGCTCAGAAGATAATTCGAGAACGAAGG-AAAAAGAGAGGTAAGAATGTAAAA-G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       496284 446 +   2379783 AATGTCTTTTTACAGGTCATGTGGCATTATCTTTAGTTCATGCAGGTGCACTTGGTATTGAGCAAGTAAAGCACAGAACGTTGCCTAAGTCAGTGGTGGATGTTTGTAGAGTTGTCTACCAAGCAAAATGTTCACTCATTAAGGTGA-CAGA---TTTTAATTCTTTTTATTCTGTGCTTTGCAGACAGTTGCTGAAATATTTGTTGTTAAAGTTGTCTTTT--CCTGGTTAACTTTGCAGACTCATCAAGAACAGGGCCGTTCTTACAAGGAGGTCTGCGCTCCTGTCATCGAA-CGT-TTGAGATTCCTCTTTAATGAATTGAGACCTGCTGTTTGTAATGATCTCTCTATAATGTCTAAGTTTAAATTGTTAAGTTCTTTGCCCCGTTGGAGGAGGATAGCTCAGAAGATAATTCGAGAACGAAGG-AAAAAGAGAGGTAAGAATGTAAAA-G
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       453363 446 +   4116138 AATGTCTTTTTACAGGTCATGTGGCATTATCTTTAGTTCATGCAGGTGCACTTGGTATTGAGCAAGTAAAGCACAGAACGTTGCCTAAGTCAGTGGTGGATGTTTGTAGAGTTGTCTACCAAGCAAAATGTTCGCTCATTAAGGTGA-CAGA---TTTTAATTCTTTTTATTCTGTGCTTTGCAGACAGTTGCTGAAATATTTGTTGTTAAAGTTGTCTTTT--CCTGGTTAACTTTGCAGACTCATCAAGAACAGGGCCGTTCTTACAAGGAGGTCTGCGCTCCTGTCATCGAA-CGT-TTGAGATTCCTCTTTAATGAATTGAGACCTGCTGTTTGTAATGACCTCTCTATAATGTCTAAGTTTAAATTGTTAAGTTCTTTGCCCCGTTGGAGGAGGATAGCTCAGAAGATAATTCGAGAACGAAGG-AAAAAGAGAGGTAAGAATGTAAAA-G
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53885370 447 +  58131712 AATGTCTTTTTACAGGTCACGTGGCATTATCTTTAGTTCATGCAGGTGCACTTGGTATTGAGCAAGTAAAGCACAGAACGTTGCCTAAGTCAGTGGTGGATGTTTGTAGAGTTGTCTACCAAGCAAAATGTTCGCTCATTAAGGTGA-CAGA---TTTTAATTCTTTTTATTCTGTGCTTTGCAGACAGTTGCTGAAATATTTGTTGTTAAAGTTGTCTTTT--CCTGGTTAACTTTGCAGACTCATCAAGAACAGGGCCGTTCTTACAAGGAGGTCTGCGCTCCTGTCATCGAA-CGT-TTGAGATTCCTCTTTAATGAACTGAGACCTGCTGTTTGTAATGACCTCTCTATAATGTCTAAGTTTAAATTGTTAAGTTCTTTGCCCCGTTGGAGGAGGATAGCTCAGAAGATAATTCGAGAACGAAGG-AAAAAGAGAGGTGAGAACGTAAAAGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       506169 446 -   3636681 AATGTCTTTTTACAGGTCATGTGGCATTATCTTTAGTTCATGCAGGTGCACTTGGTATTGAGCAAGTAAAGCACAGAACGTTGCCTAAGTCAGTGGTGGATGTTTGTAGAGTTGTCTACCAAGCAAAATGTTCGCTCATTAAGGTGA-CAGA---TTTTAATTCTTTTTATTCTGTGCTTTGCAGACAGTTGCTGAAATATTTGTTGTTAAAGTTGTCTTTT--CCTGGTTAACTTTGCAGACTCATCAAGAACAGGGCCGTTCTTACAAGGAGGTCTGCGCTCCTGTCATTGAA-CGT-TTGAGATTCCTCTTTAATGAATTGAGACCTGCTGTTTGTAATGACCTCTCTATAATGTCTAAGTTTAAATTGTTAAGTTCTTTGCCCCGTTGGAGGAGGATAGCTCAGAAGATAATTCGAGAACGAAGG-AAAAAGAGAGGTAAGAATGTAAAA-G
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       485216 446 -   4457520 AATGTCTTTTTACAGGTCATGTGGCATTATCTTTAGTTCATGCAGGTGCACTTGGTATTGAGCAAGTAAAGCACAGAACGTTGCCTAAGTCAGTGGTGGATGTTTGTAGAGTTGTCTACCAAGCAAAATGTTCGCTCATTAAGGTGA-CAGA---TTTTAATTCTTTTTATTCTGTGCTTTGCAGACAGTTGCTGAAAGATTTGTGGTTAAAGTTGTCTTTT--CCTGGTTAACTTTGTAGACTCATCAAGAACAGGGCCGTTCTTACAAGGAGGTCTGCGCTCCTGTCATCGAA-CGT-TTGAGATTCCTCTTTAATGAACTGAGACCTGCTGTTTGTAATGACCTCTCTATAATGTCTAAGTTTAAATTGTTAAGTTCTTTGCCCCGTTGGAGGAGGATAGCTCAGAAGATAATTCGAGAACGAAGG-AAAAAGAGAGGTAAGAATGTAAAA-G
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154517039 445 - 158406734 CATGTCTTTTTACAGGTCATGTGGCATTATCTTTAGTTCACGCAGGTGCACTTGGTATTGAGCAAGTAAAGCACAGAACATTGCCTAAGTCGGTGGTGGATGTTTGTAGAGTTGTCTACCAAGCAAAGTGTTCACTTATTAAGGTGA-TAGA---TTTTAATTCTTTTTCTTCTGTGCTTCGCAGACAGTTGCTGAAATCTTTGTTGTT-AAGTTGTCTTTT--CCGGGTTAACTTTGCAGACTCATCAAGAACAGGGCCGTTCTTACAAGGAGGTCTGCGCTCCTGTCATCGAA-CGT-CTGAGATTCCTCTTTAATGAACTGAGACCGGCTGTTTGTAATGACCTCTCTATAATGTCTAAGTTTAAATTGTTAAGTTCTTTGCCCCGTTGGAGGAGGATAGCTCAGAAGATAATTCGAGAACGAAGG-AAAAAGAGAGGTAAGAACGTAAAA-G
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             349124 445 -   2682657 CTTGTCTTTTTACAGGTCATGTGGCATTATCTTTAGTTCACGCAGGCGCACTTGGTATTGAGCAAGTAAAGCACAGAACGCTGCCCAAGTCGGTGGTGGATGTTTGTAGAGTTGTCTACCAAGCAAAATGCTCACTTATTAAGGTGG-TAGA---TTTTAATTATTCTTTTTGTGTGCTTCGCAGACAGTTGCTGAAATCTTTGTTGTT-AAGTTGTCTCTT--CCTGGTTAACTTTGCAGACTCATCAAGAGCAGGGCCGTTCTTACAAGGAGGTCTGCGCTCCTGTCATCGAA-CGC-CTGAGATTCCTCTTTAATGAACTGAGACCTGCTGTTTGTAATGACCTCTCTATAATGTCTAAGTTTAAATTGTTAAGTTCTTTGCCCCGTTGGAGGAGGATAGCTCAGAAGATAATTCGAGAACGAAGG-AAAAAGAGAGGTAAGAATATACAA-G
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       373367 445 -   2086007 CGTGTCTTTTTACAGGTCATGTGGCATTATCTTTAGTTCACGCAGGTGCACTTGGTATTGAGCAAGTAAAGCACAGAACATTGCCTAAGTCGGTGGTGGATGTTTGTAGAGTTGTCTACCAAGCAAAATGTTCACTTATTAAGGTGA-TAGA---TTTTAATTCTTTTTCTTGTGTGCTTCGCAGACAGTTGCTGAAATCTTTGTTGTT-GAGTTGTCTTTC--CCTGGTTAACTTTGCAGACTCATCAAGAACAGGGCCGTTCTTACAAGGAGGTCTGCGCTCCTGTCATCGAA-CGT-CTGAGATTCCTCTTTAATGAATTGAGACCTGCTGTTTGTAATGATCTCTCTGTAATGTCTAAGTTTAAATTGTTAAGTTCTTTGCCCCGTTGGAGGAGGATAGCTCAGAAGATAATTCGAGAACGAAGG-AAAAAGAGAGGTAAGAATATAAAA-G
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       436495 445 +   3831555 CGTGTCTTTTTACAGGTCATGTGGCATTATCTTTAGTTCACGCAGGTGCACTTGGTATTGAGCAAGTAAAGCACAGAACGTTGCCTAAGTCAGTGGTGGATGTTTGCAGAGTTGTCTACCAAGCAAAATGTTCACTTATTAAGGTGA-TAGA---TTTTCATTCTTTTCCTTCTGTGCTTCGCGGACAGTTGCTGAAATCTTTGTTGTT-AAGTTGTCTTTT--CCTGGTTAACTTTGCAGACTCATCAAGAACAGGGCCGTTCTTACAAGGAGGTCTGCGCTCCTGTCATCGAA-CGT-CTGAGATTCCTCTTTAATGAATTGAGACCTGCTGTTTGTAATGACCTCTCTATAATGTCTAAGTTTAAATTGTTAAGTTCTTTGCCCCGTTGGAGGAGGATAGCTCAGAAGATAATTCGAGAACGAAGG-AGAAAGAGAGGTAAGAATATAAAA-G
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116291837 442 + 116334831 AATGTGTTTTTACAGGTCATGTGGCATTATCTTTAGTTCATGCAGGTACTCTTAGTATTGAGCAAGTAAAGCACAGAACATTGCCTAAGTCAGTGGTGGATGTTTGTAGAGTCGTCTACCAAGCAAAATGCTCACTCATTAAGGTGAATAGA---TTTTAATTCTTTTTCTTCTGTGCTGTG----CAATTTCTGAGGTTTTTGTT-GCTAAGTTGTCTTTT--TCTATTTAACTTTGCAGACTCATCAAGAACAGGGCCGTTCTTATAAGGAGGTCTGTGCTCCTGTCATCGAA-CGT-TTGAGATTCCTCTTCAATGAATTGAGACCTGCTGTTTGCAATGACCTCTCCATAATGTCTAAGTTTAAACTGTTAAGTTCTTTGCCCCGTTGGAGGAGAATAGCTCAGAAGATAATTCGAGAACGAAGG-AAAAAGAGAGGTAAGAATGTAAAA-G
i micMur3.chr9              I 52 I 37
s proCoq1.NW_012148396v1     13507861 443 +  16154928 AATGTCTTTTTACAGGTCATGTAGCATTATCTTTAGTTCATGCAGGTACTCTTGGTATCGAGCAAGTAAAGCACAGAACATTGCCTAAGTCAGTGGTGGATGTGTGTAGAGTTGTCTACCAAGCAAAATGCTCACTCATTAAGGTGAATAGA---TTTTAATTCTTTTTCTTCTGTGCTGTG----CAGTTTCTGAGATATTCGTTGGTTAAGTTGTCTTTT--TCTATTTAACTTTGCAGACTCACCAAGAACAGGGCCGTTCTTACAAGGAGGTCTGTGCTCCTGTCATTGAA-CGT-TTGAGATTCCTCTTCAATGAATTGAGACCTGCTGTTTGCAATGACCTCTCTATAATGTCTAAGTTTAAACTGTTAAGTTCTTTGCCCCGTTGGAGGAGAATAGCTCAGAAGATAATTCGAGAACGAAGG-AAAAAGAGAGGTAAGAATGTAAAA-G
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             461895 443 +   3845361 --ACTGTCTTCACAGGTCACGTGGCATTGTCCTTAGTCCATGCTGGTACGCTTGGGATAGAGCAAGTGAAGCACAGGACGCTGCCTAAGTCAGTGGTGGATGTGTGTAGAGTTGTCTACCAGGCAAAGTGCTCACTCATTAAGGTGAGTAGA---CTTTAATTCTTGGTCTTTCGTGTCGTG----CAGTTTCTGAGATGTTCGTTGTTGAAGCTGTCTTTTTATCTATGTAACTTTGCAGACTCATCAAGAACAAGGCCGTTCTTACAAGGAGGTTTGTGCTCCTGTCATTGAA-CGG-TTGCGATTCCTCTTCAATGAATTGAGACCTGCTGTTTGCAATGACCTTTCCATAATGTCAAAGTTTAGACCCTTAAGTTCTCTGCCCCGTTGGAGGAGGATAGCTCAGAAGATAATTCGAGAACGAAGG-AAAAAGAGAGGTAAGAATGGAAAA-G
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56135255 441 + 145441459 AATGTC-TTTTACAGGTCATGTGGCATTATCTTTAGTTCATGTAGGTACACTTGGTATTGAGCAAGTAAAGCACAGAACATTGCCTAAATCTGTTGTGGATGTGTGTAGAGTTGTCTACCAAGCAAAATGCTCACTCATTAAGGTGAGTGGA---CTTTAATTTTTT---TTCTGTGTTGTGTAGACTGTTGCCAAAATACTTATTGTT-AAGTC-CATTTC--CTTATTTATCTTGGCAGACTCATCAAGAACAGGGCCGTTCCTACAAGGAGGTGTGTGCTCCTGTCATTGAA-CGC-TTGAGATTTCTCTTCAATGAATTGAGGCCTGCTGTTTGTAGTGACCTCTCTATAATGTCTAAGTTTAAGCTGTTAGGTTCATTACCACGTTGGAGGAGGATAGCTCAGAAGATCATTCGAGAAAGAAGG-AAAAAGAGAGGTAATAATGGAAAA-A
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60037080 433 -  91889043 AATATC-TTTTGTAGGTCACGTGGCATTATCTTTAGTTCATGCAGGAACACTTGGTATAGAGCAAGTAAAGCACAGAACATTGCCTAAATCAGTAGTGGATGTTTGTAGAGTTGTCTACCAAGCAAAATGTTCACTCATTAAGGTAAGTACA---TTTTTATTCTC----TTCTGTGCTCCGCAGATAGTTGGTAAAATATTTGGT---------ATCTTTT--CATGTTTAACTTTGTAGACGCATCAAGAACAGGGTCGTTCTTACAAGGAAGTCTGTGCTCCAGTCATCGAA-CGT-TTGAGATTCCTCTTTAATGAACTGAGACCTGCAGTTTGTAATGATCTTTCTATAATGTCCAAGTTTAAATTGTTAAGTTCTTTGCCCCGTTGGAGGAGGATAGCTCAGAAGATAATTCGAGAACGAAGG-AAGAAGAGAGGTAAGAATGTAAAA-G
i canFam3.chr3              I 1 C 0
s dasNov3.JH562051             424222 448 +    563711 AATGTC-TTTCACAGGTCATGTGGCATTATCTTTAGTTCATGCAGGTACTCTTGGTTTTGAGCAAGTCAAACACAGAACATTGCCTAAATCAGTGGTGGATGTTTGTAGAGTTGTCTACCAAGCAAAATGCTCACTAATTAAGGTAAATAAATTTTTTTAATTAGCTTTCTTCTGTGCCTTGCAGACATTTGTTGAAGTATCTGTTGTG-AAGTTGACTTTT--GGTATATAACTTTGCAGACACATCAAGAACAGGGCCGTTCTTATAAGGAGGTCTGCGCACCTGTCATCGAA-CGT-TTGAGATTCCTCTTTAATGAATTGAGACCTGCAGTGTGTAATGATCTCTCAATAATGTCTAAATTTAAGCTGTTAAGTTCTTTGCCCCGTTGGAGGAGGATAGTGCAGAAGATAATTCGAGAACGAAGG-AAAAAGAGAGGTAAGAATGTAAAA-G
i dasNov3.JH562051          C 0 C 0

a score=107840.000000
s hg38.chr15_KI270851v1_alt    187373 8 +    263054 GACAGAAG
s panTro5.chr15              73800331 8 -  83230942 GACAGAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74103738 8 -  99763055 GACAGAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       152565 8 -    281578 GACAGAAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71011445 8 + 121039945 GACAGAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321315 8 - 169600520 GACAGAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642278 8 - 171882078 GACAGAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       496730 8 +   2379783 GACAGAAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       453809 8 +   4116138 GACAGAAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53885817 8 +  58131712 GACAGAAG
i chlSab2.chr26             C 0 I 302
s manLeu1.NW_012102332v1       506615 8 -   3636681 GACAGAAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       485662 8 -   4457520 GACAGAAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154517484 8 - 158406734 GACAGAAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             349569 8 -   2682657 GACAGAAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       373812 8 -   2086007 GGCAGAAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       436940 8 +   3831555 GACAGAAG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13508304 8 +  16154928 AATAGAAA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             462338 8 +   3845361 GATGGAAA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56135696 8 + 145441459 GTTGGAAT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60037513 7 -  91889043 -GCAGGTA
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             424670 8 +    563711 GTGAGAAA
i dasNov3.JH562051          C 0 I 1
e micMur3.chr9              116292279 37 + 116334831 I

a score=24432.000000
s hg38.chr15_KI270851v1_alt    187381 2 +    263054 AT
s panTro5.chr15              73800339 2 -  83230942 AT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74103746 2 -  99763055 AT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       152573 2 -    281578 AT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71011453 2 + 121039945 AT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321323 2 - 169600520 AT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642286 2 - 171882078 AT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       496738 2 +   2379783 AT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       453817 2 +   4116138 AT
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       506623 2 -   3636681 AT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       485670 2 -   4457520 AT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154517492 2 - 158406734 AT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             349577 2 -   2682657 AT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       373820 2 -   2086007 AT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       436948 2 +   3831555 AT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13508312 2 +  16154928 AT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             462346 2 +   3845361 TG
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56135704 2 + 145441459 AT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60037521 2 -  91889043 GT
i canFam3.chr3              I 1 C 0
s dasNov3.JH562051             424679 2 +    563711 AT
i dasNov3.JH562051          I 1 C 0
e micMur3.chr9              116292279 37 + 116334831 I
e chlSab2.chr26              53885825 302 +  58131712 I

a score=16670.000000
s hg38.chr15_KI270851v1_alt    187383 1 +    263054 A
s panTro5.chr15              73800341 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74103748 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       152575 1 -    281578 A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71011455 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321325 1 - 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642288 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       496740 1 +   2379783 A
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       453819 1 +   4116138 A
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886127 1 +  58131712 A
i chlSab2.chr26             I 302 C 0
s manLeu1.NW_012102332v1       506625 1 -   3636681 A
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       485672 1 -   4457520 A
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154517494 1 - 158406734 A
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             349579 1 -   2682657 A
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       373822 1 -   2086007 A
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       436950 1 +   3831555 A
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13508314 1 +  16154928 A
i proCoq1.NW_012148396v1    C 0 I 160
s otoGar3.GL873689             462348 1 +   3845361 A
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56135706 1 + 145441459 A
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60037523 1 -  91889043 G
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             424681 1 +    563711 A
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116292279 37 + 116334831 I

a score=313874.000000
s hg38.chr15_KI270851v1_alt    187384 33 +    263054 CTATTAAAGCTTGTGCTTCACCCT-GCCACGTTG
s panTro5.chr15              73800342 34 -  83230942 CTATTAAAGCTTGTGCTTCACCCTTGCCACGTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74103749 33 -  99763055 CTATTAAAGCTTGTGCTTCACCCT-GCCACGTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       152576 33 -    281578 CTATTAAAGCTTGTGCTTCACCCT-GCCACGTTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71011456 33 + 121039945 CTATTAAAGCATGTGCTTCACCCT-GCCACGTTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321326 33 - 169600520 CTGTTAAAGCGTGTGCTTCACCCT-GCCTCGTTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642289 33 - 171882078 CTGTTAAAGCGTGTGCTTCACCCT-GCCTCGTTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       496741 33 +   2379783 CTGTTAAAGCGTGTGCTTCACCCT-GCCTCGTTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       453820 33 +   4116138 CTGTTAAAGCGTGTGCTTCACCCT-GCCTCATTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886128 32 +  58131712 CTGTTAAAGCGTGTGCTTC-CCCT-GCCTCGTCG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       506626 33 -   3636681 CTGTTAAAGCGTGTGCTTCACCCT-GCCTCGTTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       485673 33 -   4457520 CTGTTAAAGTGTGTGCTTCACCCT-GCCTTGTTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154517495 30 - 158406734 CTGTTAAAGCGTGTGCTTCACCCT-GCCTC---G
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             349580 33 -   2682657 CTGTTAAAGCGTGTGCTTCAGCCT-GCCTCGTGG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       373823 33 -   2086007 CTGTTAAAGCGTGTGCTTCACCCT-GCCTCGCTG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       436951 17 +   3831555 CTGTTAAA-----------------GCTTCGTTG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             462349 29 +   3845361 TTGTTGAAGTGTGTACTTAGCCCA-----TGTTG
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56135707 30 + 145441459 TTATTACAGTGTATACTTT---CT-GAACCTTTG
i mm10.chr7                 C 0 I 4
s canFam3.chr3               60037524 31 -  91889043 CTGTCAAAGTGTGTGCTTT--TCT-GCCATACAA
i canFam3.chr3              C 0 I 3
s dasNov3.JH562051             424682 33 +    563711 TTGTCAAAATGTTTATTTGCCTCC-TTATCGTTG
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116292279 37 + 116334831 I
e proCoq1.NW_012148396v1     13508315 160 +  16154928 I

a score=1075808.000000
s hg38.chr15_KI270851v1_alt    187417 88 +    263054 GATCTGTGATTTCAGAGTGAAGT--TTCT-CTACTGTT--------GATTCCATGTAACATTTC-TACCTGCTGCCATCA---TTTTTAT-TATAGTTAGGATT
s panTro5.chr15              73800376 87 -  83230942 GATCTGTGATTTCAGAGTGAAGT--TTCT-CTA-TGTT--------GATCCCATGTGACATTTC-TACCTGCTGCCATTC---ATTTTAT-TATAGTTATGATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74103782 87 -  99763055 GATCTGTGATTTCAGAGTGAAGT--TTCT-CTACTGTT--------GATTCCATGTGACATTTC-TACCTGCTGCCATCA----TTTTAT-TATAGTTATGATT
i panPan2.chr15             C 0 M 457
s gorGor5.CYUI01000141v1       152609 87 -    281578 GATCTGTAATTTCAGAGTGAAGT--TTCT-CTACTGTT--------GATTCCATGTAACATTTC-TACCTGCTGCCATCA---TTTTTAT-TA-AGTTACGATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71011489 89 + 121039945 GATCTGTGATTTCAGAGTGAAGT--TTCT-CTACTGTT--------GATTCCATGTGACATTTC-TACCTGCTGCCATCA---TTTTTATGTATAGTTATGATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321359 89 - 169600520 GATCTGTGATTTCAGAGTGAAGT--TTCT-CTACTGTT--------GATTCCATGTGACGTTTC-TACCTGCTGCCATCA---TTTTTATGTATAGTTACGATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642322 89 - 171882078 GATCTGTGATTTCAGAGTGAAGT--TTCT-CCACTGTT--------GATTCCATGTGACGTTTC-TACCTGCTGCCATCA---TTTTTATGTATAGTTACGATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       496774 89 +   2379783 GATCTGTGATTTCAGAGTGAAGT--TTCT-CTATTGTT--------GATTCCATGTGACGTTTC-TACCTGCTGCCATCA---TTTTTATGTATAGTTACGATT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       453853 89 +   4116138 GATCTGTGATTTCAGAGTGAAGT--TTCT-CTACTGTT--------GACTCCATGTGACGTTTC-TACCTGCTGCCATCA---TTTTTATGTATAGTTATGATT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886160 89 +  58131712 GAGCTGTGATTTCACAGTGAAGT--TTCT-CTGCTGGT--------GATTCCATGTGACGTTTC-TACCTGCTTCCATCA---TTTTTATGTATAGTTATGATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       506659 89 -   3636681 GATCTGTGATTTCAGAGTGAAGT--TTCT-CTACTGTT--------GATTCCATGTGACGTTTC-TACCTGCTGCCATCA---TTTTTATGTATAGTTATGATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       485706 89 -   4457520 GATCTGTGATTTCAGAGTGAAGT--TTCT-CTACTGTT--------GATTCCATGTGACATTTC-TACCTGCTGCCATCA---TTTTTATGTATAGTTATGATT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154517525 89 - 158406734 GATCTGTGATTTCTGAGTGGAGT--TTCT-CTGCGGTT--------GATTCCATGCCACATTTC-CACCTACTGCCATCA---TTTTTATATTTAGTTGTGATT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             349613 89 -   2682657 GATCCGTGATTTCCGAGTGAAGT--TTCT-CTGCGGGT--------GATTCCATGCCACATTTC-CAACTACTGCCGTCA---TTTCGATGTATAGTTATGATT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       373856 89 -   2086007 GATCTGTGGTTTCCAAGTGAAGT--TTCT-CTGCGGTA--------GATTCCATGCCACATTTC-CACCTACTGCCATCA---TTTTTATGTATAGTTATGATT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       436968 89 +   3831555 TATCTGTGATTTCCGAGTGAAGT--TTCT-CTGCGGTT--------GATTCCATGCCACATTCC-CACCTACTGCCATCA---TTTTTATGTATAGTTATGATT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116292316 88 + 116334831 GATCTGTGATTTCAGAGTGGAGT--TTTG-CTACTGTT--------CATTACATGTGTCGCTTC-CACCTACTGTCATAA---TTTTT-TGTGTATTTGTGATT
i micMur3.chr9              I 37 C 0
s otoGar3.GL873689             462378 77 +   3845361 GATCTATGATTTCTGAGTGGATT--TTTG-CTACTGTT--------CAT------------TTC-TACCTACTGCCATAA---TTTTTACATGTATTTATGATT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56135741 98 + 145441459 AGTCTGCGACTTCAGAGGGAAGT--TTTTGATACTGGCATGTATCAAAATGCCTGTGGCATTTC-TATGTATTGTCATAG---TATTTATGTATATTTGTGATT
i mm10.chr7                 I 4 C 0
s canFam3.chr3               60037558 90 -  91889043 AGTCTGTGATTT--GAGTGAAGCTATTCG-CTACTGGT--------CAGTACATGTGGATTTTCATGACTGCCATCATAT---TTGTTATGTGTATTTATGATT
i canFam3.chr3              I 3 C 0
s dasNov3.JH562051             424715 90 +    563711 AGTCCTTATTTTCAGATTGAAGCTATTCA-CTGCTTTT--------TGTTACATATGGCATTTC-CATACACTGCTATAGTAGTAGTTATGTGTATTGAT----
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13508315 160 +  16154928 I

a score=162807.000000
s hg38.chr15_KI270851v1_alt    187505 13 +    263054 AAATACAGACATC
s panTro5.chr15              73800463 13 -  83230942 AAATACAGAAATC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       152696 13 -    281578 AAATACAGAAATC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71011578 13 + 121039945 AAATACAGAAATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321448 13 - 169600520 AAATGCAGAAATC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642411 13 - 171882078 AAATGCAGAAATC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       496863 13 +   2379783 AAATGCAGAAATC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       453942 13 +   4116138 AAATGCAGAAATC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886249 13 +  58131712 AAATGCAGAAATC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       506748 13 -   3636681 AAATGCAGAAATC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       485795 13 -   4457520 AAATGCAGAAATC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154517614 13 - 158406734 GAATACAGAAATC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             349702 13 -   2682657 AAATACAGTAATC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       373945 13 -   2086007 AAATACAGAAATT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437057 13 +   3831555 AAATACAGAAATC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116292404 13 + 116334831 AAATACAGAAATC
i micMur3.chr9              C 0 C 0
s otoGar3.GL873689             462455 13 +   3845361 AAATGTAGAAATC
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56135839  8 + 145441459 GAAAGCAA-----
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60037648 13 -  91889043 AAATATACAGATC
i canFam3.chr3              C 0 I 220
s dasNov3.JH562051             424805 13 +    563711 AAACACAGAAATT
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13508315 160 +  16154928 I
e panPan2.chr15              74103869 457 -  99763055 M

a score=311733.000000
s hg38.chr15_KI270851v1_alt    187518 37 +    263054 TCGCTTATTTTTCCAAATGATCAGACAATGAGGCAGT-
s panTro5.chr15              73800476 34 -  83230942 TCGCTTATTTTTCCA---GATCAGACAATGAGGCAGT-
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       152709 37 -    281578 TCGCTTGTTTTTCCAAGCAATCAGACAATGAGGCAGT-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71011591 37 + 121039945 TTGCTTATTTTTCCAAGCAATCAGACAATGAGGCAGT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321461 33 - 169600520 TTGCTTATTTTTCCAAGAGAT----CAATGAGGCAGT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642424 33 - 171882078 TTGCTTATTTTTCCAAGAGAT----CAATGAGGCAGT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       496876 33 +   2379783 TTGCTTATTTTTCCAAGAGAT----CAATGAGGCAGT-
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       453955 33 +   4116138 TCGCTTATTTTTCCAAGAGAT----CAATGAGGCAGT-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886262 33 +  58131712 TCGCTTATTTTTCCAAGAGAT----CAATGAGGCAGT-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       506761 33 -   3636681 TCGCTTATTTTTCCAAGAGAT----CAATGAGGCAGT-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       485808 33 -   4457520 TCGCTTATTTTTCCAAGAGAT----CAATGGGGCAGT-
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154517627 37 - 158406734 TCGCTTGTTTTTCCAAGAGATGAGACAATGAGGCACT-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             349715 37 -   2682657 TCGCTTATTTTTCCAAGAGATCAGACAATGAGGCACT-
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       373958 37 -   2086007 TCGCTTATTTTTCCAAGAGATCAGACAATGAGGCACT-
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437070 37 +   3831555 TCACTTATTTTTCCAAGAGATCAGACAACGAGGCACT-
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116292417 36 + 116334831 TTGCTTATTTTT-TAAGAAATCAGATAGTGAAGTGAC-
i micMur3.chr9              C 0 C 0
s otoGar3.GL873689             462468 30 +   3845361 ATAC--ATTTT-----GAGATCAGCTAATGAAGCAAC-
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60037881 32 -  91889043 CTGCTTATTTTTCCAA--TATCAGATAATGATGC----
i canFam3.chr3              I 220 C 0
s dasNov3.JH562051             424818 38 +    563711 TTGCTTATTTTTCTAAGAGATTAGATAATGAATGAAAC
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135847  0 + 145441459 C
e proCoq1.NW_012148396v1     13508315 160 +  16154928 I
e panPan2.chr15              74103869 457 -  99763055 M

a score=686923.000000
s hg38.chr15_KI270851v1_alt    187555 51 +    263054 TTAGGAATTGAGTGTGGTATGATTTGATTACTAGTAAATTGATGTTG-AAAA
s panTro5.chr15              73800510 50 -  83230942 T-AGGAATTGAGTGTGGTATGATTTGATTACTAGTAAATTGATGTTG-AAAA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       152746 51 -    281578 TTAGGAATTGAGTGTGGTATGATTTGATTACTAGTAAATTGATGTTG-AAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71011628 51 + 121039945 TTAGGAATTGAGCATGGTATGATTTGATTACTAGTAAATTGATGTTG-AAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321494 51 - 169600520 TTAGGAATTGAGTGTGGTATGATTTGGTTACTAGTAAATTGATGTTG-AAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642457 51 - 171882078 TTAGGAATTGAGTGTGGTATGATTTGGTTACTAGTAAATTGATGTTG-AAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       496909 51 +   2379783 TTAGGCATTGAGTGTGGTATGATTTGGTTACTAGTAAATTGATGTTG-AAAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       453988 51 +   4116138 TTAGGAATTGAGTGTGGTATGATTTGGTTACTAGTAAATTGATGTTG-AAAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886295 51 +  58131712 TTAGGAATTGAGTGTGGTATGATTTGGTTACTAGTAAATTGATGTTG-AAAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       506794 51 -   3636681 TTAGGAATTGAGTGTGGTATGATTTGGTTACTAGTAAATTGATGTTG-AAAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       485841 51 -   4457520 TTAGGAATTGAGTGTGGTATGATTTGGTTACTAGTAAATTGATGTTG-AAAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154517664 52 - 158406734 TTAGGAATTGAGTGTGTTATGATTTGGTTACTAGTAAATTGAAGTTGAAAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             349752 52 -   2682657 TAAGGAATTGAGCGTGGTAGGATTTGGTTACTAGTAAATTGATGTTGAAAAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       373995 52 -   2086007 TTAGGAATTGAGTGTGGTATGATTTGGTTACTAGTAGATTGATGTTGAAAAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437107 52 +   3831555 TTAGGAATTGAGTGTGGTATGATTTGGTTACTAGTAAATTGATGTTGGAAAA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116292453 51 + 116334831 TTAGGAATTGAATGTGTTATGATTTGGTAACTAGCAAATTGATGCTG-AAAA
i micMur3.chr9              C 0 I 392
s proCoq1.NW_012148396v1     13508475 51 +  16154928 TTAGGAATTGAATGTGTTATGATTTGGTAACTAGTAAATTGATGCTG-AAAA
i proCoq1.NW_012148396v1    I 160 I 406
s otoGar3.GL873689             462498 49 +   3845361 TTAGGAATTGAACGTGTTATGATTTG--AACTGGTAAATTGATGCTG-ATAA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56135847 12 + 145441459 -TAGG-----------------TTTGGTTA----------------------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60037913 49 -  91889043 -TAAG-ATTGAGGGTGTTATGATTTGGTAACTAGTAAATTGATACTG-AAAA
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             424856 51 +    563711 TTTGAACTCAAATATGTTATAATCTGGTAACTAGTAAATTGATGCGG-GAAA
i dasNov3.JH562051          C 0 C 0
e panPan2.chr15              74103869 457 -  99763055 M

a score=44270.000000
s hg38.chr15_KI270851v1_alt    187606  8 +    263054 -CGTAAATA------
s panTro5.chr15              73800560  8 -  83230942 -CATAAATA------
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       152797  8 -    281578 -CATAAATA------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71011679  8 + 121039945 -CATAAATA------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321545  8 - 169600520 -CCTAAATA------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642508  8 - 171882078 -CCTAAATA------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       496960  8 +   2379783 -CCTAAATA------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454039  8 +   4116138 -CCTAAATA------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886346  8 +  58131712 -CCTAAATA------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       506845  8 -   3636681 -CCTAAATA------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       485892  8 -   4457520 -CCTAAATA------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154517716  8 - 158406734 -GGTCAATA------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             349804  8 -   2682657 -GGTAAATA------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374047  8 -   2086007 -GGTAAATA------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437159  8 +   3831555 -GGTAAATA------
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             462547  5 +   3845361 ----AGGTA------
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60037963  8 -  91889043 -GGTAAATG------
i canFam3.chr3              I 1 I 5
s dasNov3.JH562051             424907 15 +    563711 AGAAAAATACTGTAA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135859  0 + 145441459 C
e micMur3.chr9              116292504 392 + 116334831 I
e proCoq1.NW_012148396v1     13508526 406 +  16154928 I
e panPan2.chr15              74103869 457 -  99763055 M

a score=862764.000000
s hg38.chr15_KI270851v1_alt    187614 79 +    263054 ATCTTTGCTAAATTGATGGGAACAAGGAAG-TACT-TTTA-----TTA-GTTATCCTGGTA-ATGAGATATAATGGGAACATTTAAAC
s panTro5.chr15              73800568 81 -  83230942 ATCTTTACTAAATTGATGGGAACAAG-AAG-TATT-TTTA--GTATTA-GTTATCCTGGTA-ATGAGATATAATGGGAACATTTAAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104337 85 -  99763055 ATCTTTACTAAATTGATGGGAACAAGGAAGTTATT-TTTATTTTATTA-GTTATCCTGGTA-ATGAGATATAATGGGAACATTTAAAC
i panPan2.chr15             M 457 C 0
s gorGor5.CYUI01000141v1       152805 84 -    281578 ATCTTTACTAAATTGATGGGAACAAGGAAG-TATT-TTTATTTTATTA-GTTATCCTGGTA-GTGAGATATAATGGGAACATTTAAAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71011687 84 + 121039945 ATCTTTACTAAATTGATGGGAACAAGGAAG-TATT-TTTATTTTATCA-GTTATCCTGGTA-ATGAGATATAATGGGAACATTTAAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321553 84 - 169600520 ATCTTTACTAAATTGATGGGGACAAGGAAG-TATT-TTTATTTTATTA-GTTGTCCTGGTA-ATGAGATATAATGGTAACATTTAAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642516 84 - 171882078 ATCTTTACTAAATTGATGGGGACAAGGAAG-TATT-TTTATTTTATTA-GTTGTCCTGGTA-ATGAGATATAATGGTAACATTTAAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       496968 84 +   2379783 ATCTTTACTAAATTGATGGGGACTAGGAAG-TATT-TTTATTTTATTA-GTTGTCCTGGTA-ATGAGATATAATGGTAACATTTAAAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454047 84 +   4116138 ATCTTTACTAAATTGATGGGGACAAGGAAG-TATT-TTTATTTTATTA-GTTGTCCTGGTA-ATGAGATATAATGGGAACATTTAAAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886354 84 +  58131712 ATCTTTACTAAATTGATGGGGACAAGGAAA-TGTT-TTTATTTTATTA-GTTGTCCTGGTA-ATGAGATATAATGGGAACATTTAAAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       506853 84 -   3636681 ATCTTTACTAAATTGATGGGGACAAGGAAG-TATT-TTTATTTTATTA-GTTGTCCTGGTA-ATGAGATATAATGGGAACATTTAAAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       485900 84 -   4457520 ATCTTTACTAAATTGATGGGGACAAGGAAG-TATT-TTTATTTTATTA-GTTGTCCTGGTG-ATGAGATATAATGGGAACATTTAAAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154517724 78 - 158406734 ATCTTTAGTAAATTGATGGGGACTAGGAAG-------CTATTTTATTA-GTTGTCCTGGTA-ATGAGATAT-ATGGGAACATATAAAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             349812 78 -   2682657 ATCTTTACTAAATTGATGGGGACCAGGAAG-------TTATTTTATTA-GTTGTCCTGGTA-ATGAGCTAT-ATAGGAACATATAAAC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374055 78 -   2086007 ATCTTTACTGAATTGATGGGGACCAGGAAG-------TTATTTTATTA-GTTGTCCTGGTA-ATGAGATGT-ATAGGAACATAGAAAC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437167 78 +   3831555 ATCTTTACTAAATTGGTGGGGACAAGGAAG-------TTATTTTATTA-GTTGTTCTGGTA-ATGAGATAT-ATGGGAACATATAAAC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             462552 73 +   3845361 AACTTTACTAAATTGTTAGGGAAAAGGACA-TTTT-TTT-TCAAATCC-ATTGTCCTGGTA-----------ATGGGGGAATTTAAAC
i otoGar3.GL873689          C 0 I 1084
s mm10.chr7                  56135859 67 + 145441459 --TTTTAGTAAGTTGATTGGAA-----AAA-----------TTTATAACATTGTCCTGGTA-ATGAAATT--ATTGGTACATTTCATC
i mm10.chr7                 C 0 I 10
s canFam3.chr3               60037976 85 -  91889043 AGCTTTGTTAAATTGATGGGGAAAAGGAAG-TATTCTTTTTTTTATCA-CTTGTCCTGGTAAATGAAATAT-ATGGCAGTGTTTAATT
i canFam3.chr3              I 5 I 9
s dasNov3.JH562051             424922 75 +    563711 AAACTTTCTGAATTGGTGGAGAAGATGAAG-TATT--------TGTTA-GTTGTCCTGGTA-ATGAATGTTTAGTCATACAATTAA--
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116292504 392 + 116334831 I
e proCoq1.NW_012148396v1     13508526 406 +  16154928 I

a score=158227.000000
s hg38.chr15_KI270851v1_alt    187693 15 +    263054 TTATT-GCCATTCTTC
s panTro5.chr15              73800649 15 -  83230942 TTATT-GCCATTCTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104422 15 -  99763055 TTATT-GCCATTCTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       152889 15 -    281578 TTATT-GCCATTCTTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71011771 15 + 121039945 TTATT-GCCATTCTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321637 15 - 169600520 TTACG-GCCATTCTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642600 15 - 171882078 TTACG-GCCATTCTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497052 15 +   2379783 TTACG-GCCATTCTTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454131 15 +   4116138 TTACG-GCCATTCTTC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886438 15 +  58131712 TTACG-GCCATTCTTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       506937 15 -   3636681 TTACG-GCCATTCTTC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       485984 15 -   4457520 TTACT-GCCATTCTTC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154517802 15 - 158406734 TTATT-GCCATTCTTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             349890 16 -   2682657 TTATTAACCGTTCTTG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374133 15 -   2086007 TTATT-GCCATTGTTG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437245 14 +   3831555 -TATT-GCCATTCTTG
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56135936 15 + 145441459 ATATT-ACCATTTTTC
i mm10.chr7                 I 10 C 0
s canFam3.chr3               60038070 15 -  91889043 ATACT-GCCATTCTTG
i canFam3.chr3              I 9 C 0
s dasNov3.JH562051             424997 14 +    563711 -TTTT-GCAATTCTTG
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116292504 392 + 116334831 I
e proCoq1.NW_012148396v1     13508526 406 +  16154928 I
e otoGar3.GL873689             462625 1084 +   3845361 I

a score=35780.000000
s hg38.chr15_KI270851v1_alt    187708 2 +    263054 TA
s panTro5.chr15              73800664 2 -  83230942 TA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104437 2 -  99763055 TA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       152904 2 -    281578 TA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71011786 2 + 121039945 TA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321652 2 - 169600520 TA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642615 2 - 171882078 TA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497067 2 +   2379783 TA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454146 2 +   4116138 TA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886453 2 +  58131712 TA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       506952 2 -   3636681 TA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       485999 2 -   4457520 TA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154517817 2 - 158406734 TA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             349906 2 -   2682657 TA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374148 2 -   2086007 TA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437259 2 +   3831555 TA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116292896 2 + 116334831 TA
i micMur3.chr9              I 392 C 0
s proCoq1.NW_012148396v1     13508932 2 +  16154928 TA
i proCoq1.NW_012148396v1    I 406 C 0
s mm10.chr7                  56135951 2 + 145441459 TA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60038085 2 -  91889043 TA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             425011 2 +    563711 CA
i dasNov3.JH562051          C 0 C 0
e otoGar3.GL873689             462625 1084 +   3845361 I

a score=482622.000000
s hg38.chr15_KI270851v1_alt    187710 32 +    263054 AAGAAATG--TTTTT-TGTTTGGAAATATTGAGTA-------
s panTro5.chr15              73800666 30 -  83230942 AAGAAATG--TTTTT--GTTTG-AAATATTGAGTA-------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104439 31 -  99763055 AAGAAATG--TTTTT--GTTTGGAAATATTGAGTA-------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       152906 32 -    281578 AAGAAATG--TTTTT-TGTTTGGAAATATTGAGTA-------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71011788 32 + 121039945 AAGAAATG--TTTTT-TGTTTGGAAATATTGAGTA-------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321654 32 - 169600520 AAGAAATG--TTTTT-TGTTGGGAAATATTGAGTA-------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642617 32 - 171882078 AAGAAATG--TTTTT-TGTTGGGAAATATTGAGTA-------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497069 32 +   2379783 AAGAAATG--TTTTT-TGTTGGGAAATATTGAGTA-------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454148 32 +   4116138 AAGAAATG--TTTTT-TGTTGGGAAATATTGAGTA-------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886455 32 +  58131712 AAGAAATG--TTTTT-TGTTGGGAAATATTGAGTA-------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       506954 32 -   3636681 AAGAAATG--TTTTT-TGTTGGGAAATATTGAGTA-------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486001 32 -   4457520 AAGAAATG--TTTTT-TGTTGGGAAATATTGAGCA-------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154517819 33 - 158406734 AAGAAATG--TTTTTTTGTTTGGAAATACTGAGTA-------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             349908 33 -   2682657 AAGAAATG--GTTTTTTGCTTGAAAATATTGACTA-------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374150 33 -   2086007 AAGAAATG--TTTTTTTGTTTGGAAATATTGAGTA-------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437261 33 +   3831555 AAGAGATG--TTTTTTTGTTTGGAAATATTGAGTA-------
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116292898 32 + 116334831 AAGAAATG--TTTTT-TGTTTGGAAATACTGAGTA-------
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13508934 32 +  16154928 AAGAAATA--TTTTT-TGTTTAGAAATACTGAGTA-------
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             463709 32 +   3845361 AAGAAATA--TTTTT-TGTTTGGAAATACTAAGTA-------
i otoGar3.GL873689          I 1084 C 0
s mm10.chr7                  56135953 33 + 145441459 AGAAAATG--TTTTGTTGTTTTGAAGTACTGAGTA-------
i mm10.chr7                 C 0 I 558
s canFam3.chr3               60038087 31 -  91889043 AAGAAATG--TTTTT--CTTTGGAAGTATTGAGTA-------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             425013 41 +    563711 AAGAAATGAAATTTT-CCTATGGAAATAGTCAATATTGAATA
i dasNov3.JH562051          C 0 C 0

a score=1544120.000000
s hg38.chr15_KI270851v1_alt    187742 126 +    263054 TTCTGATACATGAAGAACTATAA---AGGGAAGCTA-AAA---GAGTTACTGACATTTTCCTGGAAGTAGCTGTGT--A------AGGGTACAGAAAAGT-CTTTTTGCATTA---AATCCAAATTTGAATAAAAATGCTTAGAA
s panTro5.chr15              73800696 123 -  83230942 TTCT-ATA-ATGGA-AATTATAA---AGGCAGCTAA-AAA---GAGTTACTGACATTTTCCTGGAAGTAGCTGTGTGTA------AGGCTACAGAAAAGT-CTTTTTGCATTA---AATCCAAATT-GAATAAAAATGCT-AGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104470 126 -  99763055 TTCTGATACATGGAGAATTATAA---AGGGAAGCTA-AAA---GAGTTACTGACATTTTTCTGGAAGTAGCTGTGT--A------AAGGTACAGAAAAGT-CTTTTTGCATTA---AATCCAAATTTGAATAAAAATGCTTAGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       152938 126 -    281578 TTCTGATACATGGAGAATTATAA---AGGGAAGCTA-AAA---GAGTTACTGATATTTTCCTGGAAGTAGCTGTGT--A------AGGGTACAGAAAAGT-CTTTTTGCATTA---AATCCAAATTTGAATAAAAATGCTTAGAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71011820 126 + 121039945 TTCTGATACATGGAGAATTATAA---AGGGAAGCTA-AAA---GAGTTACTGACATTTTCCTGGAAGTAGCTGTGT--A------AGGGTACAGAAAAGT-CTTTTTGCGTTA---AATCCAAATTTGAATAAAAATGCTTAGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321686 126 - 169600520 TTCTGATACATGGAGAATTAGAA---AGGGAAGCTA-AAA---GATTTATTGACGTTTTCCTGGAAGTGGCTATGT--A------AGGGTACAGAAAGGT-CTTGTTGCATTA---AATCCAAATTTGAGTAGAAATGCTTAGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642649 126 - 171882078 TTCTGATACATGGAGAATTAGAA---AGGGAAGCTA-AAA---GATTTATTGACGTTTTCCTGGAAGTGGCTATGT--A------AGGGTACAGAAAGGT-CTTGTTGCATTA---AATCCAAATTTGAGTAGAAATGCTTAGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497101 126 +   2379783 TTCTGATACGTGGAGAATTAGAA---AGGGAAGCTA-AAA---GATTTATTGACGTTTTCCTGGAAGTGGCTATGT--A------AGGGTACAGAAAGGT-CTTGTTGCATTA---AATCCAAATTTGAGTAGAAATGCTTAGAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454180 126 +   4116138 TTCTGATACGTGGAGAATTAGAA---AGGGAAGCTA-AAA---GAGTTACTGACGTTTTCCTGGAAGTGGCTATGT--A------AGGGTACAGAAAGGT-CTTGTTGCATTA---AATCCAAATTTGAGTAAAAATGCTTAGAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886487 126 +  58131712 TTCTGATACGTGGAGAATTAGAA---AGGGAAGCTA-AAA---GAGTTACTGACGTTTTCCTGGAAGTGGCTATGT--A------AGGGTACAGAAAGGT-CTTGTTGCATTA---AATCCAAATTTGAGTAAAAATGCTTAGAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       506986 126 -   3636681 TTCTGATACGTGGAGAATTAGAA---AGGGAAGCTA-AAA---GAGTTACTGACGTTTTCCTGGAAGTGGCTGTGT--A------AGGGTACAGAAAGGT-CTTGTTGCATTA---AATCCAAATTTGAGTAAAAATGCTTAGAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486033 126 -   4457520 TGCTGATACTTGGAGAATTAGAA---AGGGAAGCTA-AAA---GAGTTACTGACATTTTCCTGGAAGTGGCTATGT--A------AGGGTACAGAAAGGT-TTTGTTGCATTA---AATCCAAATTTGAGTAAAAATGCTTAGAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154517852 130 - 158406734 TTCTGATACATGGAGAATTATTACGCAGGGGAGCTA-AAA---GAGTTACTGACATTTTCGTGGAAGCAGCTGTGT--G------AGGGTACAGAAAAGT-CT--TTGCATTAAATAATCCAAATTTCAGAAAAAATGCTTAGAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             349941 130 -   2682657 TTCTGATACATGGAGAATTATTACACAGGGGAGCTG-AAA---GAGTTACTGACATTTTCATGGAAGCAGCTGTGT--G------AGGGTACAGAAAAGT-CT--TTGCATTAAATAATCCAAATTTGAGTAAAAATGCTTAGAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374183 130 -   2086007 TTCTGACACATGGAGAATTATTACACAGGGGAGCTA-AAA---GAGTTACCGACAGTTTCGTGGAAGCAGCTGTGT--G------AGGGTACGGAAAAGT-CT--TTGCATTAAATAATCCAAATTTGAGTAAAAATGCTTAGAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437294 130 +   3831555 TTCTGATACATGGAGAATTACTACACAGGGGAGCTA-AAA---GAGTGACTGACATTTTCATGGAAGCAGCTGTGT--G------AGGGTACAGAAAAGT-CT--TTGCATTAAATAATCCAAATTTGAGTAAAAATGCTTAGAA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116292930 125 + 116334831 TTCTGATATGTGGAGAATTATTATAAAAAGGAACTT-AAA---GAATTACTGATGTTTTCATATAAGTAACTGTGT--A------AGGGTATAGAAAACA-CTTTTTGCATTAAGTAATCAAAATTTAAGTAAAAATA-------
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13508966 126 +  16154928 TTCTGATATGTGGAGAATTATTATAAAAGGGAACTCAAAA---GAGTTACTGATATTTTCATGAAAATAACCGTGT--A------AGGGTACAAAAAACA-CTTTTTGCATTAAGTAATCCAAATTTAAATAAAAATA-------
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             463741 128 +   3845361 TTGTGATAAGCAGAGAATTATTATAAAAGGGAATTT-AAA---GACTTACTTTTATTTTCATGGAAGCAACTGTGT---------ATGGTACAGAAAAAAGCTTTTTGCCT----TAATCCAAATTTGAGTAAAAATGCATAGAA
i otoGar3.GL873689          C 0 T 1244
s canFam3.chr3               60038118 133 -  91889043 TTCCGATACATGGAGAATTGTTATA-AAAGTAGCTA-GAAGAGGAGTTACTAATATTTTCA-GGAAGCAGATATGT--AGTTGCTGGGATATGGAAAAGA-TTTTTTGCCTTAAATGACCAGAATTTGAATAAAAGTAC------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             425054 111 +    563711 TTCTGATACATGGGGAATTGTTATA-AAAGAGACTA-ACA---GAGTTACT---ATTTTCTCAG--------TTGT--A------AGGATATGGGGAGGG-TTTTTTGCATTA---AATCTAAATTTGAATAAAAATAC------
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I

a score=153240.000000
s hg38.chr15_KI270851v1_alt    187868 13 +    263054 ATTATAAAATAGT
s panTro5.chr15              73800819 13 -  83230942 ATTATAAAATAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104596 13 -  99763055 ATTATAAAATAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153064 13 -    281578 ATTATAAAATAGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71011946 13 + 121039945 ATTATGAAATAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321812 13 - 169600520 ATTATAAAATAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642775 13 - 171882078 ATTATAAAATAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497227 13 +   2379783 ATTATAAAATAGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454306 13 +   4116138 ATTATAAAATAGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886613 13 +  58131712 ATTATAAAATAGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507112 13 -   3636681 ATTATAAAATAGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486159 13 -   4457520 ATTATAAAATAGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154517982 11 - 158406734 ATTATAAA--AGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350071 13 -   2682657 ATTATAAAACAGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374313 13 -   2086007 ATCATAAAACAGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437424 13 +   3831555 ATTATAAAACAGT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116293055 11 + 116334831 --TATAAAATACT
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13509092 11 +  16154928 --TATAAAATACT
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               60038251  9 -  91889043 ---ATAAAATAC-
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             425165 10 +    563711 ---ATAAAATCCT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e otoGar3.GL873689             463869 1244 +   3845361 T

a score=215481.000000
s hg38.chr15_KI270851v1_alt    187881 13 +    263054 TTAGAATTTAGTC
s panTro5.chr15              73800832 13 -  83230942 TTAGAATTTAGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104609 13 -  99763055 TTAGAATTTAGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153077 13 -    281578 TTAGAATTTAGTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71011959 13 + 121039945 TTAGAATTTAGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321825 13 - 169600520 TTAGAATTTAGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642788 13 - 171882078 TTAGAATTTAGTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497240 13 +   2379783 TTAGAATTTAGTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454319 13 +   4116138 TTAGAATTTAGTC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886626 13 +  58131712 TTAGAATTTAGTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507125 13 -   3636681 TTAGAATTTAGTC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486172 13 -   4457520 TTAGAATTTAGTC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154517993 13 - 158406734 TTAGAATTTAGTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350084 13 -   2682657 TTAGAATTTAGTC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374326 13 -   2086007 TTAGAATTTAGTC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437437 13 +   3831555 TTAGAATTTAGTC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116293066 13 + 116334831 TTAGAGTTTGGTC
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13509103 13 +  16154928 TTAGAGTTCAGTC
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             462625 13 +   3845361 TTAAAATTTAAtc
i otoGar3.GL873689          T 1244 I 772
s canFam3.chr3               60038260 12 -  91889043 TTGGAATTTGGT-
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             425175 13 +    563711 CTGGAATTTTGTC
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I

a score=460087.000000
s hg38.chr15_KI270851v1_alt    187894 32 +    263054 ACTTGTGATTATAAAT-A-AACTACAGAAATTTC
s panTro5.chr15              73800845 32 -  83230942 ACTTGTGATTATAAAT-A-AACTACAGAAATTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104622 32 -  99763055 ACTTGTGATTATAAAT-A-AACTACAGAAATTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153090 32 -    281578 ACTTGTGATTATAAAT-A-AACTACAGAAATTTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71011972 32 + 121039945 ACTTGTGATTATAAAT-A-AACTACAGAAATTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321838 32 - 169600520 ACTTGTGATTATAAAT-A-AACTACAGAAATTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642801 32 - 171882078 ACTTGTGATTATAAAT-A-AACTACAGAAATTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497253 32 +   2379783 ACTTGTTATTATAAAT-A-AACTACAGAAATTTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454332 32 +   4116138 ACTTGTGATTATAAAT-A-AACTACAGAAATTTC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886639 32 +  58131712 ACTTGTGATTATAAAT-A-AACTACAGAAATTTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507138 32 -   3636681 ACTTGTGATTATAAAT-A-AACTACAGAAATTTC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486185 33 -   4457520 ACTTGTGATTATAAATAA-AACTACAGAAGTTTC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154518006 32 - 158406734 ACTTGTAATTATAAAT-A-AACTAGAGAAATTTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350097 32 -   2682657 ACTTGTAATTATAAAT-A-AACTACAGAAGTTTC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374339 32 -   2086007 ACTTGTAATTATAAAT-A-AACTACATAAATTTC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437450 32 +   3831555 ACTTGTAATTATAAAT-A-AACTACAGAAATTTC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116293079 32 + 116334831 ACTTGTGATTATAAAT-A-AACTACAGAAATTTA
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13509116 32 +  16154928 ACTTGTGATTATAAAT-A-AACTGCAGAAATTTA
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               60038272 28 -  91889043 -----TGATTATAAAT-ATGTCTACAGAAActtt
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             425188 32 +    563711 ATTTGTGATTATAAAC-C-AGTTTATAAAATGTC
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e otoGar3.GL873689             462638 772 +   3845361 I

a score=161808.000000
s hg38.chr15_KI270851v1_alt    187926 11 +    263054 TGATTATATCC
s panTro5.chr15              73800877 11 -  83230942 TGATTATAttc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104654 11 -  99763055 TGATTATAttc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153122 11 -    281578 TGATTATATAt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012004 11 + 121039945 TGATTATAttc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321870 11 - 169600520 TGATTATAttc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642833 11 - 171882078 TGATTATAttc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497285 11 +   2379783 TGATTATAttc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454364 11 +   4116138 TGATTATAttc
i cerAty1.NW_012001462v1    C 0 I 3
s chlSab2.chr26              53886671 11 +  58131712 TGATTATGttc
i chlSab2.chr26             C 0 I 1
s manLeu1.NW_012102332v1       507170 11 -   3636681 TGATTATAttc
i manLeu1.NW_012102332v1    C 0 I 1
s colAng1.NW_012115278v1       486218 11 -   4457520 TGATTATAttc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154518038 11 - 158406734 TGATCGCATTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350129 11 -   2682657 TGATTATATTC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374371 11 -   2086007 TGATTATATTC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437482 11 +   3831555 TGATTATATTC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116293111 11 + 116334831 TAATTATATTC
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13509148 11 +  16154928 TGATTATATTC
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             463410 11 +   3845361 TAAATAAAttt
i otoGar3.GL873689          I 772 C 0
s canFam3.chr3               60038300  8 -  91889043 ---ttttcttt
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             425220 11 +    563711 TGATTATATTC
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I

a score=34580.000000
s hg38.chr15_KI270851v1_alt    187937 2 +    263054 tt
s panTro5.chr15              73800888 2 -  83230942 tt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104665 2 -  99763055 tt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153133 2 -    281578 tt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012015 2 + 121039945 tt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321881 2 - 169600520 tt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642844 2 - 171882078 tt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497296 2 +   2379783 tt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454378 2 +   4116138 tt
i cerAty1.NW_012001462v1    I 3 C 0
s chlSab2.chr26              53886683 2 +  58131712 tt
i chlSab2.chr26             I 1 C 0
s manLeu1.NW_012102332v1       507182 2 -   3636681 tt
i manLeu1.NW_012102332v1    I 1 C 0
s colAng1.NW_012115278v1       486229 2 -   4457520 tt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154518049 2 - 158406734 TT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350140 2 -   2682657 TT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374382 2 -   2086007 TT
i cebCap1.NW_016107707v1    C 0 I 5
s micMur3.chr9              116293122 2 + 116334831 TT
i micMur3.chr9              C 0 I 33
s proCoq1.NW_012148396v1     13509159 2 +  16154928 TT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             463421 2 +   3845361 tt
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60038309 2 -  91889043 tt
i canFam3.chr3              I 1 C 0
s dasNov3.JH562051             425231 2 +    563711 TT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e aotNan1.NW_018503298v1       437493 0 +   3831555 C

a score=17416.000000
s hg38.chr15_KI270851v1_alt    187939 2 +    263054 tt
s panTro5.chr15              73800890 2 -  83230942 tt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104667 2 -  99763055 tt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153135 2 -    281578 tt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012017 2 + 121039945 tt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321883 2 - 169600520 tt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642846 2 - 171882078 tt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497298 2 +   2379783 tt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454380 2 +   4116138 tt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886685 2 +  58131712 tt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507184 2 -   3636681 tt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486231 2 -   4457520 tt
i colAng1.NW_012115278v1    C 0 C 0
s proCoq1.NW_012148396v1     13509161 2 +  16154928 TT
i proCoq1.NW_012148396v1    C 0 I 36
s otoGar3.GL873689             463423 2 +   3845361 tt
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60038311 1 -  91889043 -t
i canFam3.chr3              C 0 I 1
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293124 33 + 116334831 I
e dasNov3.JH562051             425233 0 +    563711 C
e aotNan1.NW_018503298v1       437493 0 +   3831555 C
e cebCap1.NW_016107707v1       374384 5 -   2086007 I
e saiBol1.JH378292             350142 0 -   2682657 C
e calJac3.chr6              154518051 0 - 158406734 C

a score=50469.000000
s hg38.chr15_KI270851v1_alt    187941 11 +    263054 tttttt---tcttt
s panTro5.chr15              73800892 10 -  83230942 tttttt----cttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104669 10 -  99763055 tttttt----cttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153137  9 -    281578 ttttt-----cttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012019 14 + 121039945 ttttttttttcttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321885 11 - 169600520 tttttt---ctttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642848 11 - 171882078 tttttt---ctttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497300 11 +   2379783 tttttt---ctttt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454382 11 +   4116138 tttttt---ctttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886687 11 +  58131712 tttttt---ctttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507186 11 -   3636681 tttttt---ctttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486233 11 -   4457520 tttttt---ctttt
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             463425 11 +   3845361 tttttt---ttttg
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60038313 11 -  91889043 tttttt---tcttt
i canFam3.chr3              I 1 I 118
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293124 33 + 116334831 I
e proCoq1.NW_012148396v1     13509163 36 +  16154928 I
e dasNov3.JH562051             425233  0 +    563711 C
e aotNan1.NW_018503298v1       437493  0 +   3831555 C
e cebCap1.NW_016107707v1       374384  5 -   2086007 I
e saiBol1.JH378292             350142  0 -   2682657 C
e calJac3.chr6              154518051  0 - 158406734 C

a score=221721.000000
s hg38.chr15_KI270851v1_alt    187952 42 +    263054 gagatggagtcttggtctgttgcca-ggctggagtgcagtggt
s panTro5.chr15              73800902 42 -  83230942 gagatggaatcttgctttgtcgccacggctggagtgcagtg-t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104679 42 -  99763055 gagatggaatcttgctttgtcgcca-ggctggagtgcagtggt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153146 42 -    281578 gagatggaatcttgctctgtcgcca-ggctggagtgcagtggt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012033 42 + 121039945 gagacagagccttgctctgtcgcca-ggctggagtgcagtggt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321896 42 - 169600520 gagacggagtcttgctctgtcacca-ggctggagtgcagtggc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642859 42 - 171882078 gagacggagtcttgctctgtcacca-ggctggagtgcagtggc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497311 42 +   2379783 gagacggagtcttgctctgtcacca-ggctggagtgcagtggc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454393 42 +   4116138 gagacggagtcttgctctgtcacca-gtctggagtgcagtggc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886698 42 +  58131712 gagacggagttttgctctgtcacca-ggctggagcgcagtggc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507197 42 -   3636681 gagacagagtcttgctctgtcacca-ggctggagtgcagtggc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486244 42 -   4457520 gagacggagtcttgctctgtcgcca-ggctggagtgcagtggc
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             463436 30 +   3845361 gagacatagtctcactctgttgccc-tg------------ggt
i otoGar3.GL873689          C 0 C 0
s dasNov3.JH562051             425233 15 +    563711 ----------------------------ATGTAGTACATTGAT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293124 33 + 116334831 I
e proCoq1.NW_012148396v1     13509163 36 +  16154928 I
e canFam3.chr3               60038324 118 -  91889043 I
e aotNan1.NW_018503298v1       437493  0 +   3831555 C
e cebCap1.NW_016107707v1       374384  5 -   2086007 I
e saiBol1.JH378292             350142  0 -   2682657 C
e calJac3.chr6              154518051  0 - 158406734 C

a score=857121.000000
s hg38.chr15_KI270851v1_alt    187994 149 +    263054 gcgatctcagctcactgcaacctccgcctcccag-gttcaaacgattcccctgcctcagccttccaagtagctgggatta---------caggcacgcgccaccactcctggctaatttttata-ttttagtagagacggagtttcaccatgttggccaa
s panTro5.chr15              73800944 156 -  83230942 gcgatctcagctcactgcaacctccgcctcccagcgttcaaacgattcccctgcctcagccttc-aagtagctgggattataggcactacaggcacgcgccaccacgcctgg-taatttttgta-ttttagtagagacggagtt-caccatgttggccaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104721 158 -  99763055 gcgatctcagctcactgcaacctccgcctcccag-gttcaaacgattcccctgcctcagccttccaagtagctgggattataggcactacaggcacgcgccaccacgcctggctaatttttgta-ttttagtagagacggagtttcaccatgttggccaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153188 158 -    281578 gcgatctcagctcactgcaacctccgcctcccag-gttcaaacgattcccctgcctcagccttccaagtagctgggattacaggcactacaggcaggcaccagcacgcctggctaatttttgta-ttttagtagagatggggtttcatcatgttggccaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012075 149 + 121039945 acaatctcagctcactgcaacctccgcctcccag-gttcaaatgattcctctctgtcagccttccaagtagctgggatta---------caggcatgcgccaccactcctggctgatttttgta-ttttagtagagacggggtttcaccatgttggccaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164321938 149 - 169600520 acgatctcagctcactgcaacctctgcctcccgg-gttcaagcgattcccctgcctcagccttccaagtagctgggatta---------taggcaagtgccaccacgcccagctaatttttgtg-ttttagtagagatagggtttcaccatgttggccga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165642901 149 - 171882078 acgatctcagctcactgcaacctccgcctcccgg-gttcaagcgattcccctgcctcagccttccaagtagctgggatta---------taggcaagtgccaccacgcccagctaatttttgtg-ttttagtagagatagggtttcaccatgttggccga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497353 149 +   2379783 acgatctcagctcactgcaacctccgcctcccag-gttcaagcgattcccctgcctcagccttccaagtagctgggatta---------taggcaagtgccaccacgcccagctaatttttgtg-ttttagtagagatagggtttcaccatgttggccga
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454435 147 +   4116138 acgatctcagctcactgcaacctccgcctcccag-gttcaagcgattcccctgcctcagccttccaagtagctgggatta---------taggcaagtgccaccacgcccagctaatttttgtg-tttcagtagagac--ggtttcaccatgttggccga
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886740 149 +  58131712 acgatctcagctcactgcaacctccgcctcccag-gttcaagcgattcccctgcctcagccttccaagtagctgggatta---------taggcaagtgccaccacgcccagctaatttttgtg-ttttagtagagagagggtttcaccatgttggccga
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507239 147 -   3636681 acgatctcagctcactgcaacctccgcctcccag-gttcaagcgattcccctgcctcagccttccaagtagctgggatta---------taggcaagtgccaccacgcctagctaatttttgtg-ttttagt--agagacggtttcaccatgttggccga
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486286 149 -   4457520 acgatctcagctcactgcaacctccgcctcccag-gttcaagcgattcccctgcctcagccttccaagtagctgggatta---------taggcaagtgccaccacgcccagctaatttttgtg-ttttagtagagacagggtttcaccatgttggccga
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             463466 147 +   3845361 aacatcataactcaccacatcctcaatctcctgg-gctcaggtgatcctcttatctcagcctcatgagtagctgggacta---------caggtgcccaccatgaaacctggctagtttttctatttttagtagagacaggtcttgctcttcct---cag
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293124  33 + 116334831 I
e proCoq1.NW_012148396v1     13509163  36 +  16154928 I
e dasNov3.JH562051             425248   0 +    563711 C
e canFam3.chr3               60038324 118 -  91889043 I
e aotNan1.NW_018503298v1       437493   0 +   3831555 C
e cebCap1.NW_016107707v1       374384   5 -   2086007 I
e saiBol1.JH378292             350142   0 -   2682657 C
e calJac3.chr6              154518051   0 - 158406734 C

a score=168777.000000
s hg38.chr15_KI270851v1_alt    188143 29 +    263054 gatggtcttgatctcctgacctcgtga----------tc
s panTro5.chr15              73801100 28 -  83230942 gatggt-ttgatctcctgacctcgtga----------tc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104879 29 -  99763055 gatggtcttgatctcctgacctcgtga----------tc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153346 29 -    281578 gatggtcttgatctcctgacctcgtga----------tc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012224 29 + 121039945 gatggtcttgatctcctgaccttgtga----------tc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164322087 29 - 169600520 gatggtcttgatcttctgacctcatga----------tg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165643050 29 - 171882078 gatggtcttgatcttctgacctcatga----------tg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497502 29 +   2379783 gatggtcttgatcttctgacctcatga----------tg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454582 29 +   4116138 gatggtcttgatctcctgacctcatga----------tg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886889 29 +  58131712 gatggtcttgatctcctgacctcatga----------tg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507386 29 -   3636681 gatggtcttgatctcctgacctcatga----------tg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486435 29 -   4457520 gatggtcttgatctcctgacctcatga----------tg
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             463613 38 +   3845361 gctggttttggacttttgatttt-tgagctcaaccagtc
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60038442 28 -  91889043 gagggacttgatc-ccagatcctggga----------tc
i canFam3.chr3              I 118 I 32
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293124 33 + 116334831 I
e proCoq1.NW_012148396v1     13509163 36 +  16154928 I
e dasNov3.JH562051             425248  0 +    563711 C
e aotNan1.NW_018503298v1       437493  0 +   3831555 C
e cebCap1.NW_016107707v1       374384  5 -   2086007 I
e saiBol1.JH378292             350142  0 -   2682657 C
e calJac3.chr6              154518051  0 - 158406734 C

a score=244202.000000
s hg38.chr15_KI270851v1_alt    188172 39 +    263054 tgcctgcctcggcctcccaaagtgctgggattacgggcg-
s panTro5.chr15              73801128 39 -  83230942 tgcctgcctcggcctcc-aaagtgctgggatacagggcgg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104908 39 -  99763055 tgcctgcctcggcctcccaaagtgctgggattacaggcg-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153375 39 -    281578 tgcctgcctcggcctcccaaagtgctgggattacaggcg-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012253 39 + 121039945 tgcctgcctcggcctcccaaagtactgggattacaggcg-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164322116 39 - 169600520 tgcctgcctcggcctcccaaagtgctgggattacaggca-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165643079 39 - 171882078 tgcctgcctcggcctcccaaagtgctgggattacaggca-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497531 39 +   2379783 tgcctgcctcggcctcccaaagtgctgggattacaggca-
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454611 39 +   4116138 tgcctgcctcggcctcccaaagtgctgggattacaggcg-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886918 39 +  58131712 tgcctgcctcggcctcccaaagtgctgggattacaggcg-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507415 39 -   3636681 tgcctgcctcggcctcccaaagtgctgggattacaggcg-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486464 39 -   4457520 tgcctgcctcggccttccaaggtgctgggattacaggcg-
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             463651 39 +   3845361 cactcacctcgacctcccagagctctaggattataggct-
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293124 33 + 116334831 I
e proCoq1.NW_012148396v1     13509163 36 +  16154928 I
e dasNov3.JH562051             425248  0 +    563711 C
e canFam3.chr3               60038470 32 -  91889043 I
e aotNan1.NW_018503298v1       437493  0 +   3831555 C
e cebCap1.NW_016107707v1       374384  5 -   2086007 I
e saiBol1.JH378292             350142  0 -   2682657 C
e calJac3.chr6              154518051  0 - 158406734 C

a score=113946.000000
s hg38.chr15_KI270851v1_alt    188211 19 +    263054 tgagccaccgcg---cctggcc---
s panTro5.chr15              73801167 19 -  83230942 tgagccactgtg---cctggcc---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104947 19 -  99763055 tgagccactgtg---cctggcc---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153414 19 -    281578 tgagccactgcg---cctggcc---
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012292 19 + 121039945 tgagccaccgct---cctggcc---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164322155 19 - 169600520 tgagccatcgcg---cccggcc---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165643118 19 - 171882078 tgagccatcgcg---cccggcc---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497570 19 +   2379783 tgagccatcgcg---cctggcc---
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454650 19 +   4116138 tgagccatcgcg---ctcggcc---
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886957 19 +  58131712 tgagccatcgcg---ctcggcc---
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507454 19 -   3636681 tgagccatcgcg---ctcggcc---
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486503 19 -   4457520 tgagccatcgcg---cctggcc---
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             463690 19 +   3845361 tgaatcacctcg---cctggcc---
i otoGar3.GL873689          C 0 I 168
s canFam3.chr3               60038502 25 -  91889043 tgagccaccaggcatcccGGAAATT
i canFam3.chr3              I 32 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293124 33 + 116334831 I
e proCoq1.NW_012148396v1     13509163 36 +  16154928 I
e dasNov3.JH562051             425248  0 +    563711 C
e aotNan1.NW_018503298v1       437493  0 +   3831555 C
e cebCap1.NW_016107707v1       374384  5 -   2086007 I
e saiBol1.JH378292             350142  0 -   2682657 C
e calJac3.chr6              154518051  0 - 158406734 C

a score=79189.000000
s hg38.chr15_KI270851v1_alt    188230 10 +    263054 TCTGATCATA
s panTro5.chr15              73801186 10 -  83230942 TCTGATCATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104966 10 -  99763055 TCTGATCATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153433 10 -    281578 TCTGATCATA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012311 10 + 121039945 TCTGATCATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164322174 10 - 169600520 TCTGATCATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165643137 10 - 171882078 TCTGATCATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497589 10 +   2379783 TCTGATCATA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454669 10 +   4116138 TCTGATCATA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886976 10 +  58131712 TCTGATCATA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507473 10 -   3636681 TCTGATCATA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486522 10 -   4457520 TCTGATCATA
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             463877 10 +   3845361 TGTGATTATA
i otoGar3.GL873689          I 168 I 16
s canFam3.chr3               60038527 10 -  91889043 TCTGATTATA
i canFam3.chr3              C 0 I 3
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293124 33 + 116334831 I
e proCoq1.NW_012148396v1     13509163 36 +  16154928 I
e dasNov3.JH562051             425248  0 +    563711 C
e aotNan1.NW_018503298v1       437493  0 +   3831555 C
e cebCap1.NW_016107707v1       374384  5 -   2086007 I
e saiBol1.JH378292             350142  0 -   2682657 C
e calJac3.chr6              154518051  0 - 158406734 C

a score=19110.000000
s hg38.chr15_KI270851v1_alt    188240 2 +    263054 TT
s panTro5.chr15              73801196 2 -  83230942 TT
i panTro5.chr15             C 0 I 3
s panPan2.chr15              74104976 2 -  99763055 TT
i panPan2.chr15             C 0 I 3
s gorGor5.CYUI01000141v1       153443 2 -    281578 TT
i gorGor5.CYUI01000141v1    C 0 I 3
s nomLeu3.chr6               71012321 2 + 121039945 TT
i nomLeu3.chr6              C 0 I 3
s rheMac8.chr7              164322184 2 - 169600520 TT
i rheMac8.chr7              C 0 I 3
s macFas5.chr7              165643147 2 - 171882078 TT
i macFas5.chr7              C 0 I 3
s macNem1.NW_012011934v1       497599 2 +   2379783 TT
i macNem1.NW_012011934v1    C 0 I 3
s cerAty1.NW_012001462v1       454679 2 +   4116138 TT
i cerAty1.NW_012001462v1    C 0 I 3
s chlSab2.chr26              53886986 2 +  58131712 TT
i chlSab2.chr26             C 0 I 3
s manLeu1.NW_012102332v1       507483 2 -   3636681 TT
i manLeu1.NW_012102332v1    C 0 I 3
s colAng1.NW_012115278v1       486532 2 -   4457520 TT
i colAng1.NW_012115278v1    C 0 I 3
s aotNan1.NW_018503298v1       437493 2 +   3831555 TT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             463903 2 +   3845361 TT
i otoGar3.GL873689          I 16 C 0
s canFam3.chr3               60038540 2 -  91889043 TT
i canFam3.chr3              I 3 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293124 33 + 116334831 I
e proCoq1.NW_012148396v1     13509163 36 +  16154928 I
e dasNov3.JH562051             425248 0 +    563711 C
e cebCap1.NW_016107707v1       374384 5 -   2086007 I
e saiBol1.JH378292             350142 0 -   2682657 C
e calJac3.chr6              154518051 0 - 158406734 C

a score=50426.000000
s hg38.chr15_KI270851v1_alt    188242 5 +    263054 ATGAC
s panTro5.chr15              73801201 5 -  83230942 ATGAC
i panTro5.chr15             I 3 C 0
s panPan2.chr15              74104981 5 -  99763055 ATGAC
i panPan2.chr15             I 3 C 0
s gorGor5.CYUI01000141v1       153448 5 -    281578 ATGAC
i gorGor5.CYUI01000141v1    I 3 C 0
s nomLeu3.chr6               71012326 5 + 121039945 ATGAC
i nomLeu3.chr6              I 3 C 0
s rheMac8.chr7              164322189 5 - 169600520 ATGAC
i rheMac8.chr7              I 3 C 0
s macFas5.chr7              165643152 5 - 171882078 ATGAC
i macFas5.chr7              I 3 C 0
s macNem1.NW_012011934v1       497604 5 +   2379783 ATGAC
i macNem1.NW_012011934v1    I 3 C 0
s cerAty1.NW_012001462v1       454684 5 +   4116138 ATGAC
i cerAty1.NW_012001462v1    I 3 C 0
s chlSab2.chr26              53886991 5 +  58131712 ATGAC
i chlSab2.chr26             I 3 C 0
s manLeu1.NW_012102332v1       507488 5 -   3636681 ATGAC
i manLeu1.NW_012102332v1    I 3 C 0
s colAng1.NW_012115278v1       486537 5 -   4457520 ATGAC
i colAng1.NW_012115278v1    I 3 C 0
s calJac3.chr6              154518051 5 - 158406734 ATGAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350142 5 -   2682657 ATGAG
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       437495 5 +   3831555 ATGAG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             463905 5 +   3845361 ACGAC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60038542 5 -  91889043 ATGAA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293124 33 + 116334831 I
e proCoq1.NW_012148396v1     13509163 36 +  16154928 I
e dasNov3.JH562051             425248 0 +    563711 C
e cebCap1.NW_016107707v1       374384 5 -   2086007 I

a score=118031.000000
s hg38.chr15_KI270851v1_alt    188247 10 +    263054 TTATACT--------------GAT
s panTro5.chr15              73801206 10 -  83230942 TTATACT--------------GAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104986 10 -  99763055 TTATACT--------------GAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153453 10 -    281578 TTATACT--------------GAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012331 10 + 121039945 TTATACT--------------GAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164322194 10 - 169600520 TTATACT--------------GAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165643157 10 - 171882078 TTATACT--------------GAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497609 10 +   2379783 TTATACT--------------GAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454689 10 +   4116138 TTATACT--------------GAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53886996 10 +  58131712 TTATACT--------------GAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507493 10 -   3636681 TTATACT--------------GAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486542 10 -   4457520 TTATACT--------------GAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154518056 10 - 158406734 TTATACT--------------GAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350147 10 -   2682657 TTACACT--------------GAT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374389 10 -   2086007 TTATACT--------------GAT
i cebCap1.NW_016107707v1    I 5 C 0
s aotNan1.NW_018503298v1       437500 10 +   3831555 TTATACT--------------GAT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             463910 24 +   3845361 TTATGTTCTTATGAATTCCACTAT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60038547 10 -  91889043 TTATACT--------------GAT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293124 33 + 116334831 I
e proCoq1.NW_012148396v1     13509163 36 +  16154928 I
e dasNov3.JH562051             425248  0 +    563711 C

a score=269135.000000
s hg38.chr15_KI270851v1_alt    188257 22 +    263054 TTACTCACAAACCTGCTTATTG
s panTro5.chr15              73801216 22 -  83230942 TTACTCACAAACCTGCTTATTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74104996 22 -  99763055 TTACTCACAAACCTGCTTATTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153463 22 -    281578 TTACGCACAAACCTGCTTATTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012341 22 + 121039945 TTACTCACAAACCTGCTTATTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164322204 22 - 169600520 TTACTCTCAAACCTGCTTATTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165643167 22 - 171882078 TTACTCTCAAACCTGCTTATTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497619 22 +   2379783 TTACTCTCAAACCTGCTTATTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454699 22 +   4116138 TTACTCTCAAACCTGCTTATTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53887006 22 +  58131712 TTACTCTCAAACCTGCTTATTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507503 22 -   3636681 TTACTCTCAAACCTGCTTATTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486552 22 -   4457520 TTACTCTCAAACCTGCTTATTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154518066 22 - 158406734 ATACTCACAGACCTGCTTATTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350157 22 -   2682657 TTACGCACAAACCTGCTTATTG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374399 22 -   2086007 TTACTCACAAACCTGCTTATTG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437510 22 +   3831555 TTACTCACAAACCTGCTTATTG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             463934 18 +   3845361 TTGTTCACAG----TCTTATAA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60038557 22 -  91889043 TTATTCACAGATCAGCTTATTA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             425248 22 +    563711 TTACTCGCAGACCAGCTTGTTA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293124 33 + 116334831 I
e proCoq1.NW_012148396v1     13509163 36 +  16154928 I

a score=90350.000000
s hg38.chr15_KI270851v1_alt    188279 6 +    263054 AACAGT
s panTro5.chr15              73801238 6 -  83230942 AACAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74105018 6 -  99763055 AACAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153485 6 -    281578 AACAGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012363 6 + 121039945 AACAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164322226 6 - 169600520 AACAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165643189 6 - 171882078 AACAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497641 6 +   2379783 AACAGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454721 6 +   4116138 AACAGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53887028 6 +  58131712 AACAGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507525 6 -   3636681 AACAGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486574 6 -   4457520 AACAGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154518088 6 - 158406734 AACACT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350179 6 -   2682657 AACAGC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374421 6 -   2086007 AACAGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437532 6 +   3831555 AACAGT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116293157 6 + 116334831 AACAAT
i micMur3.chr9              I 33 C 0
s otoGar3.GL873689             463952 6 +   3845361 AACAAT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60038579 6 -  91889043 AACAAT
i canFam3.chr3              C 0 I 4
s dasNov3.JH562051             425270 6 +    563711 AACAGA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e proCoq1.NW_012148396v1     13509163 36 +  16154928 I

a score=595923.000000
s hg38.chr15_KI270851v1_alt    188285 46 +    263054 ATT----------GATTACTGACTTTCTGATGGGCATTTT--GAAC---------AATAAGCTTATG
s panTro5.chr15              73801244 48 -  83230942 ATT----------GATTACTGAGTTTCTGATGGGCATTTTTGAAAC---------AATAAGCTTATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74105024 46 -  99763055 ATT----------GATTACTGAGTTTCTGATGGGCATTTT--GAAC---------AATAAGCTTATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153491 46 -    281578 ATT----------GATTACTGAGTTTCTGATGGGCATTTT--GAAC---------AATAAGCTTATG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012369 46 + 121039945 ATT----------AATTACTGAGTTTCTGATGGGCATTTT--GAAC---------AATAAGCTTATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164322232 46 - 169600520 ATT----------AATTACTGAGTTTCTGATGGGCATTTT--GAAC---------AATAAGCTTATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165643195 46 - 171882078 ATT----------AATTACTGAGTTTCTGATGGGCATTTT--GAAC---------AATAAGCTTATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497647 46 +   2379783 ATT----------AATTACTGAGTTTCTGATGGGCATTTT--GAAC---------AATAAGCTTATG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454727 46 +   4116138 ATT----------AATTACTGAGTTTCTGATAGGCATTTT--GAAC---------AATAAGCTTATG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53887034 46 +  58131712 ATT----------AATTACTGAGTTTCTGATGGGCAGTTT--GAAC---------AATAAGCTTATG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507531 46 -   3636681 ATT----------AATTACTGAGTTTCTGATGGGCATTTT--GAAC---------AATAAGCTTATG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486580 46 -   4457520 ATT----------AATTACTGAGTTTCTGATGGGCATTTT--GAAC---------AATAAGCTTATG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154518094 46 - 158406734 ATT----------AACTATTGATTTTCTGATGGGCATTTT--GAAC---------AATAAGTTCACA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350185 46 -   2682657 CTT----------AATTACTGATTTTCTGATGGGCATTTT--GAAC---------AGTAAGTTCACA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374427 45 -   2086007 ATT----------AATTACTGATTTTCTGGT-GGCATTTT--GAAC---------AATAAGTTCACA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437538 46 +   3831555 ATT----------AATTACTGATTTTCTGATGGGCATTTT--GAAC---------AATAAGTTCACA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116293163 46 + 116334831 ATT----------AATTACTGAGTTTTTGATGGGTATTTG--GAAC---------AATGATGTCATA
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13509199 46 +  16154928 ATT----------AATTACTGAGTTTTTGATGGGTATTTG--GAAC---------AATGGTGTCATA
i proCoq1.NW_012148396v1    I 36 C 0
s otoGar3.GL873689             463958 50 +   3845361 ATT----------AATTACTGAGTTTTTGATGGTCATTTG--GAATTAAGAAAAGACTAATG-----
i otoGar3.GL873689          C 0 I 109
s canFam3.chr3               60038589 53 -  91889043 ATTAGTTTTTTTAAATTACTGAGTTTTTGATGCACAT-----GAGC---------AATGATGTCATG
i canFam3.chr3              I 4 C 0
s dasNov3.JH562051             425276 41 +    563711 ATA----------AATTA-TGAGTTTTTTTT----ATTTT--TAGC---------AATAATAACATG
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I

a score=1916696.000000
s hg38.chr15_KI270851v1_alt    188331 149 +    263054 AAAGACTAAAGTG-TGTTAGAAGCCATCCTAATTTGATTGTTCCTGAACAAA-CC-CTACACC-ATAACAGCCTGTCTGAATGCGAGGGGTGCTCTGGATCAGGAAG-TCACAGCAGTCACACTGCTG--CGATTCCTTTAACCCAGGCATGCAGG
s panTro5.chr15              73801292 152 -  83230942 AAAGACTAAAGTG-TGTTAGAAGCCATCCTATTTTGATTGTTCCTGAACAAA-CC-CTACACC-ATAACAGCCTGTCTGAATGCGAGGGGTGCTCTGGATCAGGAAGGTCACAGCAGTCACACTGCTGTTCGATTCCTTTAACCCAGGCATGCAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74105070 149 -  99763055 AAAGACTAAAGTG-TGTTAGAAGCCATCCTAATTTGATTGTTCCTGAACAAA-CC-CTACACC-ATAACAGCCTGTCTGAATGCGAGGGGTGCTCTGGATCAGGAAG-TCACAGCAGTCATACTGCTG--CGATTCCTTTAACCCAGGCATGCAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153537 148 -    281578 AAA-ACTAAAGTG-TGTTAGAAGCCATCCTAATTTGATTGTTCCTAAACAAA-CC-CTACACC-ATAACAGCCTGTTTGAATGCGAGGGGTGCTCTGGATCAGGAAG-TCACAGCAGTCACACTGCTG--CGATTCCTTTAACCCAGGCATGCAGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012415 149 + 121039945 AAAGACGAAAGTG-TTTTAGAAGCCATCCTAATTTGATTGTTCCTGAACAAA-CC-CTACACC-ATAACAGCCTGTCTGAATCCGATGGGTGCTCTGGATCAGGAAG-TCACAGCAGTCACACTGCTG--CAATTCCTTTAACCCAGGCACGCAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164322278 148 - 169600520 AAAGACTGAAGTG-TTTTAGAAGCCAT-CTAAGTTGATTGTTCCTGAACAAA-CC-CTACACT-GTAACAGCCTGTCTGCATCCAGTGAGTACTCCGGATCAGGCAG-TCACAGCAGTCACGCTGCTG--CGATTCCTTTAACCCAGGCATGCAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165643241 148 - 171882078 AAAGACTGAAGTG-TTTTAGAAGCCAT-CTAAGTTGATTGTTCCTGAACAAA-CC-CTACACT-GTAACAGCCTGTCTGCATCCAGTGAGTGCTCCGGATCAGGCAG-TCACAGCAGTCACGCTGCTG--CGATTCCTTTAACCCAGGCATGCAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497693 148 +   2379783 AAAGACTGAAGTG-TTTTAGAAGCCAT-CTAAGTTGATTGTTCCTGAACAAA-CC-CTACACT-GTAACAGCCTGTCTGCATCCAGTGAGTGCTCCGGATCAGGCAG-TCACAGCAGTCACGCTGCTG--CGATTCCTTTAACCCAGGCATGCAGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454773 148 +   4116138 AAAGACTGAAGTG-TTTTAGAAGCCAT-CTAAGTTGATTGTTCCTGAACAAA-CC-CTACACC-GTAACAGCCTGTCTGCATCCAGTGAGTGCTCCGAATCAGGCAG-TCACAGCAGTCACGCTGCTG--CGATTCCTTTAACCCAGGCATGCAGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53887080 148 +  58131712 AAAGACTGAAGTG-TTTTAGAAGCCAT-CTAAGTTGATTGTTCCTGAACAAA-CC-CTACACC-GTAACAGCCTGTCTGCATCCAGTGAGTGCTCTGGATCAGGCAG-TCACAGCAGTCACGCTGCTG--CGATTCCTTTAACCCAGGCACGCAGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507577 148 -   3636681 AAAGACTGAAGTG-TTTTAGAAACCAT-CTAAGTTGATTGTTCCTGAACAAA-CC-CTACACC-GTAACAGCCTGTCTGCATCCAGTGAGTGCTCCGAATCAGGCAG-TCACAGCAGTCACGCTGCTG--CGATTCCTTTAACCCAGGCACACAGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486626 148 -   4457520 AAAGACTGAAGTG-TTTTAGAAGCCAT-CTAAATTGATTGTTCCTGAACAAA-CC-CTACACC-ATAACAGCCTGTCTGCATCCAGTGAGTGCTCTGGATCAGGCAG-TCACAGCAGTCACGCTGCTG--CGATTCCTTTAACCCAGGCACGCAGG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154518140 149 - 158406734 AAAGACTGAAGTG-TTGTAGAAGCCGTCCTCACTTGACGGTTCCTGGACAAA-CC-CTACACT-GTAACAGCCGTGCTGAATGAGATGGGTGCTCTGGATGAGGAAG-TCACAGCAGTCACACTGTTG--TGATTCCTTTAACCCAGGCATGCAGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350231 149 -   2682657 AAATACTGAAGTG-TTTTAGAAGCCGTCGTCACTTGACTGTTCCTGGACAAA-CC-CTACACC-GTAACAGCCGTGCTGAATCAGATGGGTGCTCTGGACTAGCACG-TCACAGCAGTCACACTGTTG--TGATTCCTTTAACCCAGGCATGCGGG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374472 149 -   2086007 AAAGACCGAAGTG-TTTTAGAAGCCACCCTCACTTGACTGTTCCTAGACAAA-CC-CTGCACT-GTGACAGTCGTGCTGAATCAGCCGGGTGCTCTGGATTAGGAAG-TCACAGCAGTCACACTGTTG--TGATTCCTTTAACCTAGGCATGCAGG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437584 149 +   3831555 AAAGACCGAAGTG-TTTTAGAAGCCATCCTCACTTGACTATTCCTGGACAAA-CC-CTACACC-GTCACAGCTGTGCTGAATCAGATGGGTGCTCTGGATTAGGAAG-TCACAGCCGTCACACTGTTG--TGATTCCTTTAACCCAGGCGTGCAGG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116293209 149 + 116334831 AAAGACTAATGTG-TTTTAAAAGCCATCCCAAAGTGATTGTTTCTGAAAAAA-CT-CTTAACCTACAATAACTTATCTGAATCTTAGGAGTGCTCT-GATCAGGAAG-TAACAGCGGTAACACTTCTG--AGATTCCTTTAACCCAGGCATCCAGG
i micMur3.chr9              C 0 I 74
s proCoq1.NW_012148396v1     13509245 150 +  16154928 AAAGACTAATGTG-TTTTAGAAGTCATCCCAAATTGATTGTTCCTGAACAAA-CC-CTTAACTTACAATAACTTGTCTGAATCCTAGAAGTGCTCTGGATCAGGAAG-TAACAACAATAACACTTCTG--AGATTCCTTTAACCCAGGCATCCAGG
i proCoq1.NW_012148396v1    C 0 I 1
s otoGar3.GL873689             464117 144 +   3845361 AAAGACTAATGTGTTTTTAGAAGCCATCCCAA----ATTGTTCCTGAACAAA-CC-TTTAACCCACAGTAACTTGTCTGAATCTTGGAAGTACTCTGG---AGGGAG-TCACAGCACTGACACTTCTA--AGATTCCTTTAACCCAGGCATCCAGG
i otoGar3.GL873689          I 109 I 1
s canFam3.chr3               60038642 143 -  91889043 AAAGATTAGCTTG-TGTTAGAAGCCATCCTGAATTGATTGTTCTTGAGCAAA-CTGTTAAGCC-ACAACAA-TTGCCTGAATCTGAGAGATGCTCCAGGTCAGGAGA-TCATGGTAGGAATGCTTCTG--AGATCTTTGGAGCAGAGGCA------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             425317 146 +    563711 AAAGAGTAACATG-CTTTAGAAGCCAACCTGTACTGTATGTTCCTGAGCAAATCC-TTTAACC-ACAACAACTTGTCCGAATACTAGAAATGCTCTGCATCAGGAAG-TCACAGCAACAGCATTTATG--AGATCCCTTTAGCCCAAGCAGA----
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I

a score=125203.000000
s hg38.chr15_KI270851v1_alt    188480 9 +    263054 AACTCAGCC
s panTro5.chr15              73801444 9 -  83230942 AACTCAGCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74105219 9 -  99763055 AACTCAGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153685 9 -    281578 AACTCAGCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012564 9 + 121039945 AACTCAGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164322426 9 - 169600520 AACTCAGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165643389 9 - 171882078 AACTCAGCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497841 9 +   2379783 AACTCAGCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454921 9 +   4116138 AACTCAGCC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53887228 9 +  58131712 AACTCAGCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507725 9 -   3636681 AACTCAGGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486774 9 -   4457520 AACTCAGCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154518289 9 - 158406734 GACTCAGCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350380 9 -   2682657 AACTCAGCC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374621 9 -   2086007 AACTCAGCC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437733 9 +   3831555 AACTCAGCC
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13509396 9 +  16154928 AACTCGGCC
i proCoq1.NW_012148396v1    I 1 I 64
s otoGar3.GL873689             464262 9 +   3845361 AACTCAGCC
i otoGar3.GL873689          I 1 I 6
s dasNov3.JH562051             425463 9 +    563711 GTCTCAGTT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293358 74 + 116334831 I
e canFam3.chr3               60038785 0 -  91889043 C

a score=457945.000000
s hg38.chr15_KI270851v1_alt    188489 51 +    263054 TGGGCCCAGG----AGACAGG-CTGCCTCGGAA-TGAGGGAGAGAGA---CTCCA-CATTT
s panTro5.chr15              73801453 49 -  83230942 TGGGCC-AGG----AGACAGG-CTGCCTCGGCA-TGAGG-AGAGAGA---CTCCA-CATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74105228 51 -  99763055 TGGGCCCAGG----AGACAGG-CTGCCTCGGCA-TGAGGGAGAGAGA---CTCCA-CATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153694 51 -    281578 CGGGCCCAGG----AGACAGG-CTGCCTCGGCA-TGAGGGAGAGAGA---CTCCA-CATTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012573 53 + 121039945 CGGGCCCAGG----AGACAGGCCTGCCTCAGCA-TGAGGGAGAGAGA---CTCCACCATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164322435 52 - 169600520 CGGGCCCA-G----AGACAGGCCTGTCTCAGCA-TGAGGGAGAGAGA---CTCCACCATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165643398 52 - 171882078 CGGGCCCA-G----AGACAGGCCTGTCTCAGCA-TGAGGGAGAGAGA---CTCCACCATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497850 52 +   2379783 CGGGCCCA-G----AGACAGGCCTGTCTCAGCA-TGAGGGAGAGAGA---CTCCACCATTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454930 52 +   4116138 CGGGCCCA-G----AGACAGGCCTGTCTCAGCA-TGAGGGAGAGAGA---CTCGACCATTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53887237 52 +  58131712 CGGGCCCA-G----AGACAGGCCTGTCTCAGCA-TGAGGGGGAGAGA---CTCCACCATTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507734 52 -   3636681 CGGGCCCA-G----AGACAGGCCTGTCTCAGCA-TGAGGGAGAGAGA---CTCCACCATTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486783 52 -   4457520 CGGGCCCA-G----AGACAGGCCTGTCTCAGCA-TGAGGGAGAGAGA---CTCCACCATTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154518298 53 - 158406734 CGGGCCCAGG----AGACAGGCGTGCCTCAGTG-TGACGGGGAGAGA---CTCCACCATTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350389 53 -   2682657 TGGGCCCGGG----AGACAGGCGTGTCTCAGTG-TGAGGGAGAGAGA---CTCCGCCATTT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374630 53 -   2086007 TGGGCCCAGG----AGACAGGTGTGTCTTGGTG-TTAAGGAGAGAGA---CTCCACCATTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437742 53 +   3831555 CGGGCCCAAG----AGACAGGCCTGTCTCAGTG-TGAGGGAGAGAGA---CTCCGCCATTT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             464277 56 +   3845361 CAGGCGCTAGAGCCAGCCAGGCCTGTCCCAGCT-TGACAGGGATGGC---TCCCTCCCCC-
i otoGar3.GL873689          I 6 I 5
s canFam3.chr3               60038785 54 -  91889043 CAGGCTTAGG----AGACTG--CCATTGCAGCG-TGAGGGAAGATGATGCCCTCACCACCC
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             425472 46 +    563711 -----TCA-G----AAGCAGGCTTGTGTCAGCTCTGAGGGAAAATGA---TCTC--CCTTG
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293358 74 + 116334831 I
e proCoq1.NW_012148396v1     13509405 64 +  16154928 I

a score=665873.000000
s hg38.chr15_KI270851v1_alt    188540 43 +    263054 --------GCCATCTCATATCCGTGGGTTCTGAGCCCACACTGTCACTTTT-
s panTro5.chr15              73801502 41 -  83230942 --------GCCATCTCATATC-GTGGGTTCTGAGCC-ACACTGTCACTTTT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74105279 43 -  99763055 --------GCCATCTCATATCCGTGGGTTCTGAGCCCACACTGTCACTTTT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153745 43 -    281578 --------GCCATCTCATATCCGTGGGTTCTGAGCCCACACTGTCACTTTT-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012626 43 + 121039945 --------GCTATCTCATATCCATGGGTTCTGAGCCCACGCTGTCACTTTT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164322487 43 - 169600520 --------GCCATCTCATATCTGTGGGTTCTGAGCCCACACTGTCACTTTT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165643450 43 - 171882078 --------GCCATCTCATATCTGTGGGTTCTGAGCCCACACTGTCACTTTT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497902 43 +   2379783 --------GCCATCTCATATCTGTGGGTTCTGAGCCCACACTGTCACTTTT-
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       454982 43 +   4116138 --------GCCATCTCGTATCCGTGGGTTCTGAGCCCACACTGTCACTTTT-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53887289 43 +  58131712 --------GCCATCTCATATCTGTGGGTTCTGAGCCCACACTGTCACTTTT-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507786 43 -   3636681 --------GCCATCTCATATCCGTGGGTTCTGAGCCCACACTGTCACTTTT-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486835 43 -   4457520 --------GCCATCTCATATCCATGGGTTCTGAGCCCACACTGTCACTTTT-
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154518351 43 - 158406734 --------GCCATCTCATGCCCGTGGGCTCTGAGCCCACACTGTCACTTTG-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350442 43 -   2682657 --------GCCATCTCATGCCGGTGGGTTCTGAGCCCACACTGTCACTTTT-
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374683 43 -   2086007 --------GCCATCTCATGCCTGTGGGTTCTGAGCCCACACTGTCACTTTT-
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437795 43 +   3831555 --------GCCATCTCATGCCCGTGGGTTCTGAGCCCACACTGTCACTTTT-
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116293432 43 + 116334831 --------GCCACCTCATGTCCATGGGTTCTGAGCCCACATTGTCACCTTT-
i micMur3.chr9              I 74 I 18
s proCoq1.NW_012148396v1     13509469 43 +  16154928 --------GCCACCTCATGTCCATGGATTCTGAGCCCACACTGTCACCTTT-
i proCoq1.NW_012148396v1    I 64 I 1
s otoGar3.GL873689             464338 43 +   3845361 --------GTCACCGCACATCCGTGGATTCTGAGCCCACAGTGTCATCTTT-
i otoGar3.GL873689          I 5 I 1
s canFam3.chr3               60038840 41 -  91889043 --------GC--TCTCACCTCCACAGATTCTGAGCCCACATTGTTACCTCT-
i canFam3.chr3              I 1 I 1
s dasNov3.JH562051             425518 51 +    563711 GCCCTCTGAACATCTTATGTT-GTGGTTTCTAAGTCCACATTGTCACCTTTT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I

a score=259397.000000
s hg38.chr15_KI270851v1_alt    188583 18 +    263054 AGAGTTT-CTTGT---GGGTTT
s panTro5.chr15              73801543 18 -  83230942 AGAGTTT-CCTGT---GGGTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74105322 18 -  99763055 AGAGTTT-CCTGT---GGGTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153788 18 -    281578 AGAGTTT-CTTGT---GGGTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012669 18 + 121039945 AGAGTTT-CTTGT---GGGTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164322530 18 - 169600520 AGAGTTT-CTTGT---GGGTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165643493 18 - 171882078 AGAGTTT-CTTGT---GGGTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       497945 18 +   2379783 AGAGTTT-CTTGT---GGGTTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       455025 18 +   4116138 AGAGTTT-CTTGT---GGGTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53887332 18 +  58131712 AGAGTTT-TTTGT---GGGTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       507829 18 -   3636681 AGAGTTT-CTTGT---GGGTTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       486878 18 -   4457520 AGAGTTT-CTTGT---GGGTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154518394 18 - 158406734 AGAGTTT-CTTGT---GGGTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350485 18 -   2682657 AGAGTTT-CTCGT---GGGTTT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       374726 19 -   2086007 AGAGTTTCCTTGT---GGGTTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       437838 18 +   3831555 AGAGTTT-CTTGT---GGGTTT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13509513 21 +  16154928 AAAGTTT-CTTGTTTTGGATTT
i proCoq1.NW_012148396v1    I 1 C 0
s otoGar3.GL873689             464382 21 +   3845361 AAAGTTC-CTTGTTTGGGGTTT
i otoGar3.GL873689          I 1 C 0
s canFam3.chr3               60038882 21 -  91889043 AAAGTTT-CTTGTTTTGGGTTT
i canFam3.chr3              I 1 C 0
s dasNov3.JH562051             425569 21 +    563711 AAAGTTT-CTTGTTGTGGATTT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293475 18 + 116334831 I

a score=3051237.000000
s hg38.chr15_KI270851v1_alt    188601 259 +    263054 --ATAGATT-------TA-TCGTGTGGTGTTTCAAGCTGGTTTTC-----------TTTTTTTTTT---GGAAATTAAGTAACTT-----------------------GAAAAGATTAAGT---GATTA-A-TATTCCTGTTGC---------tgtgtcagggatccccgagccttctctcaggcttgatga-ttcact------------aaaagg--------------actcagaagagctgttatagtcacagctgtgttttta-------------------------------------------ctgcaa--aaaggatacagattaaaatt-agcagaggg-aagggt-gcatggagggaag-tccaga-ggaaactaggcacacgctt
s panTro5.chr15              73801561 260 -  83230942 --ATAGATT-------TA-TTGTGTGTTGTTTCAAGCTGGTTTTC-----------TTTTTTTTTT-TTGGAAATTAAGTAACTT-----------------------GAAAAGATTAAGT---GAT-A-A-TATTTCTGTTGC---------tgtgtcagg-atccc-gagccttctctcagcttgaatga-ttcact------------aaaagg--------------actcagaagagctgttatagtcacagctgtgtttttt-------------------------------------------tactca--aaaggat-cagatataaatt-agcagaggggaaaggt-gcatggagggaagatccagaaggaaactaggcacacgctt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74105340 263 -  99763055 --ATAGATT-------TA-TTGTGTGTTGTTTCAAGCTGGTTTCT-----------TTTTTTTTTT---GGAAATTAAGTAACTT-----------------------GAAAAGATTAAGT---GATTA-A-TATTCCTGTTGC---------tgtgtcagggatccccgagccttctctcaggcttgatga-ttcact------------aaaagg--------------actcagaagagctgttatagtcacagctgtgtttttt-----------------------------------------acttgcaa--aaaggatacagattaaaattaagcagaggg-aagggtggcatggagggaag-tccaga-ggaaactaggcacacgctt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       153806 262 -    281578 --ATAGATT-------TA-TTGTGTGTTGTTTCAAGCTGGTTTTC-----------TTTTTTTTTT---GGAAATTAAGTAACTT-----------------------GAAAAGATTAAGT---GATTA-A-TATTCCTGTTGC---------tgtgtcagggatccccgagccttctctcaggcttgatga-ttcact------------aaaagg--------------actcagaagagctgttatagtcacagctgtgttgttt-----------------------------------------tactgcaa--aaaggatacagattaaaatt-agcagaggg-aagggt-gcatggaggggaagtccaga-ggaaactaggcacacgctt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012687 303 + 121039945 --ATAGATT-------TG-TTGTGTGTTGTTTCAAGCTGGTTTTC-----------TTTTTTTTCT--TGGAAATTAAGTAACTT-----------------------GAAAAGATTAAGT---GATTA-A-TATTCCTGTTGC---------tgtgtcagggatccccgagccttctctcaggcttgatga-ttcact------------aaaagg--------------actcagaagagctgttatactcacagctgtgtttttttttgttttgttttgtttttttgttttttttgtttttttttttaccgcaa--aaaggatacaggttaaaatt-agcaaaggg-aagggt-gcatgaagggaat-tccaga-ggaaactaggcacaagctt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164322548 264 - 169600520 --ATAGATT-------TA-TTGTGCGTTGTTTCAAGCTGGTTTTC-----------TTTTTCTTTTTTTGGAAATTAAGTAACTT-----------------------ATAAAGATTAAGT---GATTA-A-TATTCCTGTTGC---------tgtgtcagggatccccgagccctgtctcaggcttaatga-ttcact------------aaaagg--------------actcagaagagctgttatactcacagctgtggttttt-----------------------------------------tactgcaa--aaaggatacagattaagatt-agcaaaggg-aagggt-acttggagggaag-tccaga-gaaaactaggcacaagctt
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              165643511 264 - 171882078 --ATAGATT-------TA-TTGTGCGTTGTTTCAAGCTGGTTTTC-----------TTTTTCTTTTTTTGGAAATTAAGTAACTT-----------------------ATAAAGATTAAGT---GATTA-A-TATTCCTGTTGC---------tgtgtcagggatccccgagccctgtctcaggcttaatga-ttcact------------aaaagg--------------actcagaagagctgttatactcacagctgtggttttt-----------------------------------------tactgcaa--aaaggatacagattaagatt-agcaaaggg-aagggt-acttggagggaag-tccaga-gaaaactaggcacaagctt
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011934v1       497963 264 +   2379783 --ATAGATT-------TA-TTGTGCGTTGTTTCAAGCTGGTTTTC-----------TTTTTCTTTTTTTGGAAATTAAGTAACTT-----------------------ATAAAGATTAAGT---GATTA-A-TATTCCTGTTGC---------tgtgtcagggatccccgagccctgtctcaggcttaatga-ttcact------------aaaagg--------------actcagaagagctgttatactcacagctgtggttttt-----------------------------------------tactgcaa--aaaggatacagattaagatt-agcaaaggg-aagggt-acttggagggaag-tccaga-gaaaactaggcacaagctt
i macNem1.NW_012011934v1    C 0 I 1
s cerAty1.NW_012001462v1       455043 264 +   4116138 --ATAGATT-------TA-TTGTGCGTTGTTTCAAGCTGGTTTTC-----------TTTTTCTTTTTTTGGAAATTAAGTAACTT-----------------------ATAAGGATTTAGT---GATTA-A-TATTCCTGTTGC---------tgtgtcagggatccccgagccctgtctcaggcttaatga-ttcact------------aaaagg--------------actcagaagagctgttatactcacagctgtggttttt-----------------------------------------tactgcaa--aaaggatacagattaagatt-agcaaaggg-aagggt-acttagagggaag-tccaga-gaaaactaggcacaagctt
i cerAty1.NW_012001462v1    C 0 I 1
s chlSab2.chr26              53887350 262 +  58131712 --ATAGATT-------TA-TTGTGCATTGTTTCAAGCTGGTTTTC-----------TCTTTCTTTTTTTGGAAATTAAGTAACTT-----------------------ATAAAGATTAAGT---GATTA-A-TATTCCTGTTGC---------tgtgtcagggatccccgagccctgtctcaggcttaatga-ttcact------------gaaagg--------------actcagaagagctgttatactcacagctgtggttttt-----------------------------------------tacggcaa--aaaggatacagattaagatt-agcaaaggg-aagggt-acttggagggaag-t--aga-gaaaactaggcacaagctt
i chlSab2.chr26             C 0 I 1
s manLeu1.NW_012102332v1       507847 264 -   3636681 --ATAGATT-------TA-TTGTGCGTTGTTTCAAGCTGGTTTTC-----------TTTTTCTTTTTTTGGAAATTAAGTAACTT-----------------------ATAAAGATTAAGT---GATTA-A-TATTCCTGTTGC---------TCtgtcagggatccccgagccctgtctcaggcttaatga-ttcact------------aaaagg--------------actcagaagagctgttatactcacagctgtggttttt-----------------------------------------tactgcaa--aaaggatacagattaagatt-agcaaaggg-aagggt-acttagagggaag-tccaga-gaaaactaggcatgagctt
i manLeu1.NW_012102332v1    C 0 I 1
s colAng1.NW_012115278v1       486896 265 -   4457520 --ATAGATT-------TA-TTGTGTGTTGTTTCAAGCTGGttttc---ttttcttttttttttttttttGGAAATTAAGTAACTT-----------------------ATAAAGATTAAGA---GATTA-A-TATTCCTGTTGC---------tgtgtcagggatccccgagccctgtctcaggcttgataa-ttcact------------aaaagg--------------actcagaagagctgttatactcacagctgtggttttt-----------------------------------------tactgcaa--aaaggatacagattaagatt-agcaaaggg-aagggt-acatggagggaag-tccaga--------aggcacaagctt
i colAng1.NW_012115278v1    C 0 I 1
s calJac3.chr6              154518412 260 - 158406734 --ATAGATT-------TA-TTGTGTATTGTTGCAAGTTGGTTTTC-----------T-----TTTTTTTGGAAATTAAGTAACTT-----------------------ATAAATATTAAAT---GATTA-A-TATTCCTGTTGC---------tgtgtcagggatcc--------tttctcagacttgatga-ttcgct-------------aaaggactcca----caggactcagaagagctgttagactcacagttgtgggtttt-----------------------------------------tactgcaa--aaaagatacagattaaaatt-agccaaggg-gaggac-gcctggagggaag-tccaga-ggaaactaggcacaagctt
i calJac3.chr6              C 0 I 1
s saiBol1.JH378292             350503 262 -   2682657 --GTAGATT-------TA-TCGTGTATTGTTGCAAATTGGTTTTC-----------T-----TTTTTTTGGAAATTAAGTAACTT-----------------------ATAAATATTAAAT---GATTA-ATTATTCCTGTTGC---------tgtgtcagggatcc--------tttctcagacttgatga-ttcact------------aaaaggactcca----caggactctgaagagctgttagactcacagttgtgggtttt-----------------------------------------tactgcaa--aaaggatacagattaaaatt-agccaaggg-gaagat-tcctggagggaag-tcctga-ggaaactaggcacaagctt
i saiBol1.JH378292          C 0 I 1
s cebCap1.NW_016107707v1       374745 261 -   2086007 --ATAGATT-------TA-TTGTGTATAGTTGCAAGTTGGTTTTC-----------------TTTTTTTGGAAATTAAGTAACTT-----------------------ATAAATATTAAAT---GATTA-A-TATTCCTGTTGC---------tgtgtcagggatcc--------tttctcagacttgatgatttcact------------aaaaggactccg----aagaactcaggagagctgttagactcacagttgtgggtttt-----------------------------------------tactgcaa--aaaggatacagattaaaatt-agccaaggg-gaggat-gcctggagggaag-tcccga-ggaaactaggcagaagctt
i cebCap1.NW_016107707v1    C 0 I 1
s aotNan1.NW_018503298v1       437856 266 +   3831555 --ATAGATTTATTGTGTA-TTGTGTATTGTTGCAAGTTAGTTTTC-----------------TTTTTTTGGAAATTAAGTAACTT-----------------------ATAAATATTAAAT---GATTA-A-TATTCCTGTTGC---------tgtgtcaggtatcc--------tttctcagacttgatga-ttcact------------aaaaggactcta----caggactcagaagagctgttagactcacagttgtgggtttt-----------------------------------------tactgcaa--aaaggatacagattaaaatt-agccaa-gg-gaggat-gtctggagggaag-tccagg-ggaaactaggcacaagctt
i aotNan1.NW_018503298v1    C 0 I 1
s micMur3.chr9              116293493 272 + 116334831 --ATAGATT-------TA-TTGTATGATGTTTGCAGCTAGTTTTC-----------------TTTTTTTGGAAATTAAATAACTT-----------------------ATGAAGTATAAGT---AATTA-G-TTTTCCTGGTGT---------tgtgtctggggtccccaagccctctctcaggcttgatga-ttcact------------aaaaggattccagagtcaggactcagaagagctgttgtactcacagttatagtttgt-----------------------------------------tactgcaa--aaaggatacagattaaaatg-agcaaaagg-aagggt-gcatggaggaaag-tttaaa-agaaactaggcctaagttt
i micMur3.chr9              I 18 I 190
s proCoq1.NW_012148396v1     13509534 272 +  16154928 --GTAGATT-------TA-TTGTGTGATGTTTGAAGCTGGTTTTC-----------------TTTTATTGGAAATTAAATAACTT-----------------------ATGAAGTATAAGT---AATTA-G-TTTTCCTGGTGT---------tgtgtctggggtccccaagccctctctcaggcttgatga-ttcact------------agaaggactccacagacaggactcagaagagctgttatactcacagttacaatttat-----------------------------------------tactgcaa--acaggatacagattaaaatt-agcaaaagg-aagagt-gcatggaggaaag-tttaaa-agaaactaggcccaagttt
i proCoq1.NW_012148396v1    C 0 I 1
s otoGar3.GL873689             464403 314 +   3845361 --ATAGATT-------TA-TTGTATGATATTTGAAGCTAGttttcttttttcttttttttttttttttttGAAATTAAGTAACCTTACCTCTCACCCCTTTGGCTGAGATCAAGTATGTGTGAAAATTATG-ATGTTTAAGTGTGATAATTACtgtgttcagggtccccaagccctctctcagccttgatga-ttcact------------aaaaggactccacaggcaggacacagaagaactgttatact--cagttatagcttac-----------------------------------------tcctgcca--aaa------atattaaaatg-tgcagaagc-aaggtt-acat---gggaag-tccaga-agaagctaggcctgagttt
i otoGar3.GL873689          C 0 I 1
s canFam3.chr3               60038903 263 -  91889043 --AAATATT-------TAGTTGTGTTATGTTTGAAG---GTTTTT-----------TTTT--TTTTTAAGAAATTTAAGTAACTT-----------------------ATAAA-------T---GATTA-A-TATTGCTGGTGC---------TGTATTAggg-ccaccaagagcacccttaaatttgatga-ttcactgatatatggctcaatagg--------------actcagaagagctgttatactcatagttatggtttat-----------------------------------------tactttgt--a-aggatacaagttagaatt-agtaaaagg-aaaggt-gcattgagagaaa-tccaaa-ggaaactgggcctaagctt
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             425590 204 +    563711 ATATGTTTT-------TA-TTGTATGATGTCCGAAAC-------C-------------------TTAAAAAATATTAAATATGCT-----------------------GTAAAATATAAAT---AAttg-g-tta------------------tttgttag-------------------caggctcagaaa-t--atc------------agaatg-----------------------------tttactcatggttatg----tt-----------------------------------------tactgaagccaaaggataaagtttaaggtc-agcaaagggaaaaggt-acatgg-gtgaag-tccagg-agaaaccaggcacaagctt
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I

a score=589328.000000
s hg38.chr15_KI270851v1_alt    188860 53 +    263054 --tggtgtctctccccagtggcgtcacgt-------------gga--tgtgcttagctctcccagcaata
s panTro5.chr15              73801821 51 -  83230942 --tggtgtctc--cccagtggcgtcacgt-------------gga--tgtgcttagctcttccagcaaca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74105603 53 -  99763055 --tggtgtctctccccagtggcgtcacgt-------------gga--tgtgcttagctctcccagcaaca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       154068 52 -    281578 --tggtgtctctccccagtgg-gtcacgt-------------gga--tgtgcttagctctcccagcaaca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71012990 53 + 121039945 --tggtgtctccccacagtggcgtcacgt-------------gga--tgtgcttagctctcccagcaata
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164322813 53 - 169600520 --tggtgtttctccccagtggcgtcgttt-------------gga--tgtgcttcgctctcccagcaaca
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              165643776 53 - 171882078 --tggtgtttctccccagtggcgtcgttt-------------gga--tgtgcttcgctctcccagcaaca
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011934v1       498228 53 +   2379783 --tggtgtttctccccagtggcgtcgttt-------------gga--tgtgcttcgctctcccagcaaca
i macNem1.NW_012011934v1    I 1 C 0
s cerAty1.NW_012001462v1       455308 53 +   4116138 --tggtgtttctccccagtggcgtcgttt-------------gga--tgtgctttgctctcccagcaaca
i cerAty1.NW_012001462v1    I 1 C 0
s chlSab2.chr26              53887613 53 +  58131712 --tggtgtttctccccagtggcgtcattt-------------gga--tgtgcttcgctctcctagcaaca
i chlSab2.chr26             I 1 C 0
s manLeu1.NW_012102332v1       508112 53 -   3636681 --tggtgtttctccccagtggcgtcattt-------------gga--tgtgctttgctctcccagcaaca
i manLeu1.NW_012102332v1    I 1 C 0
s colAng1.NW_012115278v1       487162 53 -   4457520 --tggtatttctccccagtggcgtcgttt-------------gga--tgtgcttcgctctcccagcaaca
i colAng1.NW_012115278v1    I 1 C 0
s calJac3.chr6              154518673 52 - 158406734 --cggtgtctct-cgcagtggcgtcacgt-------------ggg--catgcttagctctcccagcagca
i calJac3.chr6              I 1 C 0
s saiBol1.JH378292             350766 53 -   2682657 --tggtgtctttccacagtggcatcacat-------------gga--cgtgcttagctctcccagcaaca
i saiBol1.JH378292          I 1 C 0
s cebCap1.NW_016107707v1       375007 53 -   2086007 --tggtgtctctctgcagtggcgtcacat-------------gga--cgtgcttagctctcccagcaaca
i cebCap1.NW_016107707v1    I 1 C 0
s aotNan1.NW_018503298v1       438123 53 +   3831555 --tggtgtctctccgcagtggcgtcacgt-------------gga--cgtgcttagctctcccagcaaca
i aotNan1.NW_018503298v1    I 1 C 0
s proCoq1.NW_012148396v1     13509807 55 +  16154928 --tggtatctcctcctagtggagtcacgt--gg---------gga--cgtgcttaggtctctcagcaaca
i proCoq1.NW_012148396v1    I 1 I 45
s otoGar3.GL873689             464718 64 +   3845361 --cgatgtctcttcccagtggagtccctt--gggtaagcagtgga--catgtgcagctctcctggcagtc
i otoGar3.GL873689          I 1 C 0
s canFam3.chr3               60039166 42 -  91889043 --------------ctagtggagctgtac-------------agaaccatgcttaattctctcagcagt-
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             425794 59 +    563711 ctagttgttctgacccagtggagtcatccccga---------tga--tgcgcttagttctctcaacaatg
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293765 190 + 116334831 I

a score=411186.000000
s hg38.chr15_KI270851v1_alt    188913 54 +    263054 gt--gtcacatcatg-tgtgaagaattgttaaccaggccagcgcacctgagcctcga
s panTro5.chr15              73801872 54 -  83230942 gt--gtcacatcatggtgtgaagaattgttaaccaggccagcgcacctgagc-tcga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74105656 54 -  99763055 gt--gtcacatcatg-tgtgaagaattgttaatcaggccagcacacctgagcctcga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       154120 51 -    281578 gt--gtcacatcatg-tgtgaagaattgttaaccaggccagcgcacctgagc---ga
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71013043 56 + 121039945 gtgggtcacatcatg-tgtgaagaattgttaaccaggccagcacacctgagcctcga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164322866 56 - 169600520 gtgtgtcacatcatg-tgtgaagagttgttaaccaggccagcgcacctgagccttga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165643829 56 - 171882078 gtgtgtcacatcatg-tgtgaagagttgttaaccaggccagcgcacctgagccttga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       498281 56 +   2379783 gtgtgtcacatcatg-tgtgaagagttgttaaccaggccagcgcacctgagccttga
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       455361 56 +   4116138 gtgtgtcacatcatg-tgtgaagagttgttaaccaggccagctcacctgagccttga
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53887666 56 +  58131712 gtgtgtcacgtcatg-tgtgaagagttgttaaccaggccagcgcacctgagccttga
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       508165 56 -   3636681 gtgtgtcacatcatg-tgtgaagagctgttaaccaggccagcgcacctgagccttga
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       487215 56 -   4457520 gtatgtcacatcatg-tgtgaagagttgttaaccaggccagcgcacctgagccttga
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154518725 43 - 158406734 gtgcatcacatcctg-------------ttgagca-gccagcgcacctgagtctcca
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350819 43 -   2682657 gcgtatcacatcccg-------------ttaacca-gccagggcacctgagccttga
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       375060 43 -   2086007 gtgcatcacatcctg-------------ttaacca-gccagggcacctgagccttga
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       438176 43 +   3831555 gtgcatcacatcctg-------------ttaacca-gccagcacacctgagccttga
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             464782 28 +   3845361 ----atgacattatg-----aagtgctgtcgagcagg--------------------
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60039208 54 -  91889043 --gagagaccacatg-tatgaagggctgtcagtcagggatgctcgcctgagccttga
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             425853 45 +    563711 --ttgtggcaacatg---cgcagtgttgccaat-------gctcacctgagccctgg
i dasNov3.JH562051          C 0 I 1
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293765 190 + 116334831 I
e proCoq1.NW_012148396v1     13509862 45 +  16154928 I

a score=722879.000000
s hg38.chr15_KI270851v1_alt    188967 84 +    263054 g-tctagagattttgtt-gggggccagtcacat-acgcaggca---gtgcccctgtgactgacctcactc---------aggctccagtgccc-cagtgc
s panTro5.chr15              73801926 83 -  83230942 gctctagagattttgtt-gggg-ccagtcacattacgcag-ca---gtgcccctgtgactgacctcactc---------agactccagtgccc--agtgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74105710 84 -  99763055 g-tctagagattttgtt-gggggccagtcacat-acgcaggca---gtgcccctgtgactgacctcactc---------agactccagtgccc-cagtgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       154171 84 -    281578 g-tctagagattttgtt-gggggccagtcacat-acgcaggca---gtgcccatgtgactgacctcactc---------agactccagtgccc-cagtgc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71013099 88 + 121039945 g-tctagagattttgtt-gggggccagtcacat-acgcagtca---gtgcccgtgtgactgacctcaatt----attg-agactccagtgccc-cagtgc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164322922 88 - 169600520 g-tctagagtttttatt-gggggccagtcacaa-gcacaggca---gtgcacatgtgactgacctcaatt----actt-agactctggtgcct-cagcgc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165643885 88 - 171882078 g-tctagagtttttatt-gggggccagtcacaa-gcacaggca---gtgcacatgtgactgacctcaatt----actt-agactctggtgcct-cagcgc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       498337 88 +   2379783 g-tctagagtttttatt-gggggccagtcacaa-gcacaggca---gtgcacatgtgactgacctcaatt----actt-agactctggtgcct-cagcgc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       455417 88 +   4116138 g-tctagagtttttatt-gggggccagtcacaa-gcacaggca---gtgcacatgtgactgacctcaatt----actt-agactctggtgcgt-cagcgc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53887722 88 +  58131712 g-tctagagtttttatt-gggggccagtcacaa-gcacaggca---atgcacatgtgactgacctcaatt----actt-agactctggtgcct-cagcgc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       508221 88 -   3636681 g-tctagagtttttatt-gggggccagtcacaa-gcacaggca---gtgcacatgtgactgacctcaatt----actt-agactctggtgcct-cagcgc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       487271 88 -   4457520 g-tctagagtttttatt-gggggccagtcacaa-gtgcaggca---gtgcacatgtgactggcctcaatt----actt-agactctggtgcct-cagcac
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154518768 84 - 158406734 g-tctagaggttttgtt-gggggccagtcacat-----aggca---ctgcctgtg----tgacctcagtcaactactc-agactccggtgccc-cagagc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350862 89 -   2682657 g-tctagaggttttgttggggggccagtcacat-----aggca---gtgcctgtgtgactgacctcaatcactcactt-agactccagcgccc-cagagc
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       375103 88 -   2086007 g-tctagaggttttgtt-gggggccagtcactt-----tggca---gtgcttgtgtgactgacctcaatcaattactc-agactccagtgccc-cagagc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       438219 88 +   3831555 g-tctagaggttttgtt-gggggccagtcacat-----aggca---gtgcctgtgtgactgacctcaatcaattactc-agattccagtgccc-cagagc
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13509907 88 +  16154928 g-tccaaggtttttatt-gggggccagtcacat-gggcgtgca---gtgcctacgtgactgacctcaatt----actt-agattccggtgccc-cagagc
i proCoq1.NW_012148396v1    I 45 I 1
s otoGar3.GL873689             464810 16 +   3845361 -------------------gggctcacccac----------------------------------------------------------gccC-------
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60039263 88 -  91889043 g-ttcaggattattatt--gggatcagtcacat-----agacatatgggcctgcatggttgctcttagtt----acttaagactcaagtatccacagtgt
i canFam3.chr3              I 1 C 0
s dasNov3.JH562051             425899 74 +    563711 g-tccaggaaattgatt-gggctttagtcatgt-aggcatgca---atgcccatgtggctgacatgagct----actc----------------cagaac
i dasNov3.JH562051          I 1 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116293765 190 + 116334831 I

a score=602825.000000
s hg38.chr15_KI270851v1_alt    189051 70 +    263054 aaaaacaagtggt-------------ccctcgcaagtcccatcattagcat-aaactacctggccagaccactgccacaaggtc
s panTro5.chr15              73802009 69 -  83230942 aaaaacaagtggt-------------ccctcgca-gtcccatcattagcat-aaactacctggccagaccactgccacaaggtc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74105794 69 -  99763055 -aaaacaagtggt-------------ccctcgcaagtcccatcattagcat-gaactacctggccagaccactgccacaaggtc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       154255 70 -    281578 aaaaacaggtggt-------------ccctcgcaagtcccatcattagcat-aaactacctggccagaccactgccacaaggtc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71013187 70 + 121039945 aaaaacaagtggt-------------ccctcgcaggtcacatgattagcat-aaactacctggccagaccactgccacaaggtc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164323010 69 - 169600520 aaaagcaagtggt-------------ccctctagagtcacatcattagcat-aatctacct-gcctgactactgccacaaggtc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165643973 69 - 171882078 aaaagcaagtggt-------------ccctctagagtcacatcattagcat-aatctacct-gcctgactactgccacaaggtc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       498425 69 +   2379783 aaaagcaagtggt-------------ccctctagagtcacatcattagcat-aatctacct-gcctgactactgccacaaggtc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       455505 69 +   4116138 aaaaacaagtggt-------------ccctctagagtcacatcattagcat-aatctgcct-gcctgactactgccacaaggtc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53887810 69 +  58131712 gaaaacaagtggt-------------ccctctagagttacatcattagcat-aatctacct-gcctgactactgccacaaggtc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       508309 69 -   3636681 aaaaacaagtggt-------------ccctctagagtcacatcgttagcat-aatctgcct-gcctgactgctgccacaaggtc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       487359 69 -   4457520 aaaaacaggtggt-------------ccctcccgagtcacatcattagcat-aatctgcct-gcctgactactgccacaaggtc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154518852 55 - 158406734 aa------------------------cccccgcaagtcacatcattagcac-acactacctggcca----agtgccccgaggtc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             350951 79 -   2682657 aaaaacaaggggtccggtcccctg-ccacccgcaagtcacatcattagcataacaccacctggcca----agtgccaccaggtc
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       375191 79 -   2086007 aaaaacaagtggtctggttccccgcccactcgcaagtcacatcgttagcat-acgctacctggcca----agtgccacaaggtc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       438307 78 +   3831555 aaaaacaagtggtctggtcctcctcccacccgcaaatcacatcattagcat-acactgcctggcca----agtgccac-aggtc
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116293955 69 + 116334831 aaaaacaggtgat-------------ctct-gtaagtcacattgttatcat-aaaccatctagtcaaactggtaccacatggtc
i micMur3.chr9              I 190 C 0
s proCoq1.NW_012148396v1     13509996 69 +  16154928 aaaaacaggtgat-------------ctct-gtaagtcacattgttatcat-aaactatctagtcaaactggtgccacatggtc
i proCoq1.NW_012148396v1    I 1 I 18
s otoGar3.GL873689             464826 63 +   3845361 AGAGCAAGGGGAT-------------CCCT-GTAAGTCACATT------AT-AAACCTTCTAGTCAGACTAGTGCCACGTGGTG
i otoGar3.GL873689          C 0 I 2
s canFam3.chr3               60039351 56 -  91889043 --aaacagataat-------------aacc-atacgtcccattgttagcat-aaactgtgtggtca---tatggcc--------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             425973 67 +    563711 acaaataggtcat-------------cact-ataaatctcattgttagtgt-aaaccatctggttc--tctgtggccccaggcc
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I

a score=79546.000000
s hg38.chr15_KI270851v1_alt    189121 6 +    263054 ctgggt
s panTro5.chr15              73802078 6 -  83230942 ctgggt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74105863 6 -  99763055 ctgggt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       154325 6 -    281578 ctgggt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71013257 6 + 121039945 ctgggt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164323079 6 - 169600520 ctgggt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165644042 6 - 171882078 ctgggt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       498494 6 +   2379783 ctgggt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       455574 6 +   4116138 ctgggt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53887879 6 +  58131712 ctgggt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       508378 6 -   3636681 ctgggt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       487428 6 -   4457520 ctgggt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154518907 6 - 158406734 ctgggt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             351030 6 -   2682657 ctgggt
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       375270 6 -   2086007 ctgggt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       438385 6 +   3831555 ctgggt
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116294024 6 + 116334831 cttggc
i micMur3.chr9              C 0 C 0
s otoGar3.GL873689             464891 6 +   3845361 CTGggc
i otoGar3.GL873689          I 2 C 0
s canFam3.chr3               60039407 6 -  91889043 ccagac
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             426040 5 +    563711 atggg-
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e proCoq1.NW_012148396v1     13510065 18 +  16154928 I

a score=2770152.000000
s hg38.chr15_KI270851v1_alt    189127 205 +    263054 gtcaggtataccaaaaa----a-----ctt-ctcaggcaggatgttccaagggctcagagctcagctcctagaag------aaggaccaatcctgaagggacagaccttcctt-gggaatttgcagggtttgagcaaccccggc-ctgctatgttagct-ctttactgcccaGATGTATTATC-ATGTTGCTTATTTTTTATATTATATGCTGAGGAGACTTAG---------------------------------------A
s panTro5.chr15              73802084 205 -  83230942 gtcaggtataccaaaaa----a-----ctttctcaggcaggatgttccaagggctcagagctcagctcctaga-g------aaggaccaatcctgaagggaca-accttcctttgggaatttgcagggtt-gagcaaccccggctctgctatgttagct-ctttactgcCACGGTGTATTATC-ATGTTGCTTATTTTTTATATTATATGCTGAGGAGATTTAG---------------------------------------A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74105869 205 -  99763055 gtcaggtataccaaaaa----a-----ctt-ctcaggcaggatgttccaagggctcagagctcagctcctagaag------aaggaccaatcctgaagggacagaccttcctt-gggaatttgcagggtttgagcaaccccggc-ctgctatgttagct-ctttactgTCCAGGTGTATTATC-ATGTTGCTTATTTTTTATATTATATGCTGAGGAGATTTAG---------------------------------------A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       154331 206 -    281578 gtcaggtataccaaaaa----a-----ctt-ctcaggcaggatgctctaagggctcagagctcagctcctagaag------aaggaccaatcctgaagggacagaccttcctt-gggaatttgcagggtttgagcaaccccggc-ctgctatgttagct-ctttactgcccaGGTGTATTATCAATGTTGCTTATTTTTTATATTATATGCTGAGGAGATTTAG---------------------------------------A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71013263 205 + 121039945 gtcaggtataacaaaaa----a-----ctt-atcaggcaggatgttccaagggctcagagctcagctcctagaag------aaggaccaatcctgaagggaccgattttcctt-gggaattggcagggtttgagcaaccctggc-ctgctgtattagct-ctttactgcccaAGTGTATTATC-ATGTTGCTTATTTTTTATATTATATGCTGAGGAGATGTAG---------------------------------------A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164323085 204 - 169600520 gtcagggataccaaaaa----a-----ctt-acca-gcaggatgttccaaggactcagagctcagctcctagaag------aaggaccaatcctgaagggacagaccttcctt-gggcttgtgcagggtttgagcaaccccagc-ctgctatgttaact-ctctactgcccaGGTGTATTATC-ATGTTGCTTATTTTTTATATTATATGCTGAGGAGATTTAG---------------------------------------A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165644048 204 - 171882078 gtcagggataccaaaaa----a-----ctt-acca-gcaggatgttccaaggactcagagctcagctcctagaag------aaggaccaatcctgaagggacagaccttcctt-gggcttgtgcagggtttgagcaaccccagc-ctgctatgttaact-ctctactgcccaGGTGTATTATC-ATGTTGCTTATTTTTTATATTATATGCTGAGGAGATTTAG---------------------------------------A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       498500 205 +   2379783 gtcagggataccaaaaa----a-----ctt-accaggcaggatgttccaaggactcagagctcagctcctagaag------aaggaccaatcctgaagggacagaccttcctt-gggcttgtgcagggtttgagcaaccccagc-ctgctatgttaact-ctctactgcccaGGTGTATTATC-ATGTTGCTTATTTTTTATATTATATGCTGAGGAGATTTAG---------------------------------------A
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       455580 205 +   4116138 gtcaggtataccaaaaa----a-----ctt-accaggcaggatgttccaaggactcagagctcagctcctagaag------aaggaccagtcctgaagggacagaccttcctt-gggcatttgcagggtttgagcaaccccagc-ctgctatgttaact-cttcactgcccaGGTGTGTTATC-ATGTTGCTTATTTTTTATATTATATGCTGAGGAGATTTAG---------------------------------------A
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53887885 205 +  58131712 gtcaggtataccaaaaa----a-----ctt-accaggcaggatgttccaaggactcagagcgcagctcctagaag------aaagaccaatcctgaagggacagaccctcctt-gggcatttgcagggtttgagcaaccccagc-ctgctatgttaact-ctttactgcccaGGTGTATTATC-ATGTTGCTTATTTTTTATATTATATGCTGAGGAGATTTAG---------------------------------------A
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       508384 205 -   3636681 gtcagggataccaaaaa----a-----ctt-accaggcaggatgttccaaggactcagagctcagctcctagaag------aaggaccaatcctgaagggacagaccttcctt-gggcatttgcagggtttgagcaaccccagc-ctgctatgttaact-cttcactgcccaGGTGTGTTATC-ATGTTGCTTATTTTTTATATTATATGCTGAGGAGATTTAG---------------------------------------A
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       487434 205 -   4457520 gtcaggtataccaaaaa----a-----ctt-accaggcaggatgttccaagcactcagagctcagctcctagaag------aaggaccaatcctgaagggacagaccttcctt-gggaatttgcagggtttgagcaaccccagc-ctgctatgttagct-ctttactgcccaGATGTATTATC-ATGTTGCCTATTTTTTATATTATATGCTGAGGAGATTTAG---------------------------------------A
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154518913 248 - 158406734 gtcaggcatgccaaaaaactta-----cct-atccagcgggatgttacaagggctcagagctcagctcctagaag------aaggaccagtcctgaagggacagaccttcctc-gggaattggcagagtttgagcaaccccggc-ctgctgtgttagct-ctttactgcccaGATGTATTATT-ATGTTGCTTATTTTGTATGTTAGATGCTGAGGAGACttatatatatttatctatataaaaatctatatttttatCTATAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             351036 206 -   2682657 gtcaagcatgccaaaaaa---a-----cgt-atccagcgggatgtgacaaaggctcagagctcagttcctagaaa------aaggaccagtcctaaagggactgaccttcctc-gggagttggcagggtttgagcaaccccagc-ctgctgtgttagct-ctttactgcccaGGTGTATTATT-AAGTTGCTTATTTTGTATGTTATATGCTTAAGAGATTTAT---------------------------------------A
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       375276 205 -   2086007 gtcgagcatgccaaaaa----a-----ctt-atccagcgggatgttacaaaggctcagagctcagttcctagaaa------aaggaccagtcctgaagggacagaccttcctc-gggaattggcagggtttgagcaaccctggt-ctactgtgttagct-ctttactgcccaGGTGTATTATT-ATGTTGCTTATTTTGTATGTTATATGCTGAGGAGATTTAC---------------------------------------A
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       438391 202 +   3831555 gtcaagcgtgccaaaaa----a-----ctt-atccagcgggatgttacaagggcccagagctcagttcctag---------aaggaccagtcctgaagggacagaccttcctc-aggaattggcagggtttgagcaaccccggc-ctgctgtgttagct-ctttactacccaGGTGTATTATT-ATGTTGCTTATTTTGTATGTTATATGCTGAGGAGATTTAG---------------------------------------A
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116294030 205 + 116334831 ctcagctacaccaaaac----a-----ctt-atcaggcaggatatttcaagggctcagagctcagtttctaggag------aaggaccagtcctgaagggacagacctttctt-gggaatttgcagggtttgaacaatccaggc-ctagtatgttagcc-cattactgTCCAGGTTTCTTATC-ATGTTGCTTATTTTTTATATTACATTCTGATGAGATTCAG---------------------------------------A
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13510083 205 +  16154928 ctcaggtataccaaaac----a-----ctt-atcaggcaagatgttgcaagggctcagagctcagtttctagaag------agggagcaatcctgaaaggacagacctttctt-gggaatttgcagggtttgagcaacccaggc-ctgctgtgttagcc-ttttattgcccaGGTTTCTTATC-ATGTTGCTTATTTTTTATATTATGCTCTGAGGAGATTTAG---------------------------------------A
i proCoq1.NW_012148396v1    I 18 I 949
s otoGar3.GL873689             464897 195 +   3845361 ttcaggcttaccaccac----a-----ctt-gcaaggcagggta-tgcagcggttcagaggtcagctt---gtag------aagcaacagtcctgcaggaacaggcctttcct-ggaaatctgcagggtttgagcagcccaggc-ctgctgtgtcagcc-tattactgcccaAGTCT-------ATAGTGCTAATTTTTCATATTATATTCTGAGGAGATTTAG---------------------------------------A
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60039413 179 -  91889043 ctcaggtatacagaaac----t-----ctt-atcaggcagaaca-----------------tcagttcataggag------ctggccaagtgctgaagggacag-----tctt-gggaatttgtagggtttgggcaacctagac-ctgctgtgttaagtgttttactgcccaGGTATATTATT-AA-----TTACATTGTTTATTATATGCTGAGAAGAAATAG---------------------------------------A
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             426045 203 +    563711 --------cacccaaaa----actactctt-aacaggcagaattattcaagggctcaaaggttattgcccaggagctggccaatagccagtcctgaa--gacaggccaatttt-tgtaatgtataggatttgagcaactcagcc-ctccttagttaacc-ctttactgcataGGGATAGT----CTATTGTTTATTATTTATGCAATATGTTGAATAAAATTAG---------------------------------------A
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I

a score=302558.000000
s hg38.chr15_KI270851v1_alt    189332 23 +    263054 CCAAAAATTTTAAAAGAGAT----AAA
s panTro5.chr15              73802289 22 -  83230942 CCAAAAATTTTAAA-GAGAT----AAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74106074 23 -  99763055 CCAAAAATTTTAAAAGAGAT----AAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       154537 23 -    281578 CCAAAAATTTTAAAAGAGAT----AAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71013468 23 + 121039945 CCAAAAATTTTAAAAGAGAG----AAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164323289 23 - 169600520 CCAAAAATTTTAAAAGAGAT----AAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165644252 23 - 171882078 CCAAAAATTTTAAAAGAGAT----AAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       498705 23 +   2379783 CCAAAAATTTTAAAAGAGAT----AAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       455785 23 +   4116138 CCAAAAATTTTAAAAGAGAT----AAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53888090 23 +  58131712 CCAACAATTTTAAAAGAGAT----AAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       508589 23 -   3636681 CCAAAAATTTTAAAAGAGAT----AAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       487639 23 -   4457520 CCAAAAATTTTAAAAGAGAT----AAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154519161 23 - 158406734 TCAAGAATTTTAAAAGAGAT----AAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             351242 23 -   2682657 CCAAGAATTTTAAAAGAGAG----AAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       375481 23 -   2086007 CCAAGAATTTTAAAAGAGGG----AAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       438593 23 +   3831555 CTAAGAATTTTAAAAGAGAT----AAA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116294235 23 + 116334831 TCAGTAATTTTTAAAGGGAT----AAA
i micMur3.chr9              C 0 I 680
s otoGar3.GL873689             465092 27 +   3845361 TCAAAAATTTTTAAAGGGATTACAAAA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60039592 23 -  91889043 CTAAAATTCTTAAAAGGGAG----TAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             426248 23 +    563711 CTAAAAACCTTGAAAGAGAG----CAA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e proCoq1.NW_012148396v1     13510288 949 +  16154928 I

a score=1509347.000000
s hg38.chr15_KI270851v1_alt    189355 194 +    263054 GTATAGGGAGGAGATTCCACATATCACAGTG--AATTCAG------------------------------------------------TT-GATTCAGTT--ACACAG---TA-----ACAGAACCACTGAACTGGACCAg-ggtggacaagcc-aggaacta---------tggg-ccaaattctacctc----ttgctggctttgggttgccc----atggactaagac-------c-tttttttttt-tttccagttt--gaaattgttatttaaaaa-ttaaa
s panTro5.chr15              73802311 193 -  83230942 GTATAGGGAGGAAATTCCACATATCACAGTG--AATTCAG------------------------------------------------TTTGATTCAGTTTACCACAG---TA-----ACAGAAC-ACTGAACTGGACCGTTGGTGGACAAGCCGAGGAACTG---------TGgggccaaattctacctc----ttgcttgctttgtgttgcc-----atggactaagac-------c-tttttttttt-----cagttt--gaaattgtt-tttaaaaa-ttaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74106097 191 -  99763055 GTATAGGGAGGCAATTCCACATATCACAGTG--AATTCAG------------------------------------------------TT-GATTCAGTT--ACACAG---TA-----ACAGAACCACTGAACTGGACCGT-ggtggacaagcc-aggaactg---------tggg-ccaaattctacctc----ttgctggctttgggttgccc----atggactaagac-------c-tttttttt-------cagttttgaaaattgttttttaaaaatttaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       154560 190 -    281578 GTATAGGGAGGAAATTCCACATATGACAGTG--AATTCAG------------------------------------------------TT-GATTCAGTT--ACACAG---TA-----ACAGAACCACTGAACTGGACCgg-ggtggacaagcc-aggaactg---------tggg-ccaaattctacctc----ttgctggctttgggttgccc----atggactaagac-------c-tttttttttt-----cagttt--gaaattgttttttaaaaa-ttaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71013491 192 + 121039945 ATATAGGGAGGAAATTCCACATATCACAGTG--AATTCAA------------------------------------------------TT-GATTCAGTT--ACACAG---TA-----ACAGAACCACTGAACTGGACCAA-ggtggacaagcc-aggaactg---------tggg-ccaaattccacctc----ttgcttgctttgtgttgccc----atggactaagac-------c-ttttttttttttttccagttt--gaaattgttttttaaaaa-tt---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164323312 195 - 169600520 ATATAGGGAGGAAATTCCACATATCACAATG--AATTCAA------------------------------------------------TT-GATTTAGTT--ACACAC---TA-----ACAGAACCCCTGAACTGGACCAg-ggtggacaagcc-aggaactg---------tggg-ccaaattccacctc----ttgtttgctttgtgttggcc----aggtactaagac-------c-ttttttttttttttccagttt--gaaattgttttttaaaaa-ttaga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165644275 195 - 171882078 ATATAGGGAGGAAATTCCACATATCACAATG--AATTCAA------------------------------------------------TT-GATTTAGTT--ACACAC---TA-----ACAGAACCCCTGAACTGGACCAg-ggtggacaagcc-aggaactg---------tggg-ccaaattccacctc----ttgtttgctttgtgttggcc----aggtactaagac-------c-ttttttttttttttccagttt--gaaattgttttttaaaaa-ttaga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       498728 194 +   2379783 ATATAGGGAGGAAATTCCACATATCACAATG--AATTCAA------------------------------------------------TT-GATTTAGTT--ACACAC---TA-----ACAGAACCCCTGAACTGGACCAg-ggtggacaagcc-aggaactg---------tggg-ccaaattccacctc----ttgtttgctttgtgttggcc----aggtactaagac-------c--tttttttttttttccagttt--gaaattgttttttaaaaa-ttaga
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       455808 196 +   4116138 ATATAGGGAGGAAATTCCACATATCACAATG--AATTCAA------------------------------------------------TT-GATTTAGTT--ACACAC---TA-----ACAGAACCCCTGAACTGGACCAg-ggtggacaagcc-aggaactg---------tggg-ccaaattccacctc----ttgtttgctttgtgttggcc----aggtactaagac-------ctttttttttttttttccagttt--gaaattgttttttaaaaa-ttaga
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53888113 193 +  58131712 ATATAGGGAGGAAATTCCACATATCACAATG--AATTCAA------------------------------------------------TT-GATTTAGTT--ACACAC---TA-----ACAGAACCCCTGAACTGGACCAg-ggtggacaagcc-aggaactg---------tggg-ccaaattccacctc----ttgtttgctttgtgttggcc----aggtactaagac-------ctttttttttttttttccagttt--gaaatttttttttataaa-tt---
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       508612 195 -   3636681 ATATAGGGAGGAAATTCCACATACCACAATG--AATTCAA------------------------------------------------TT-GATTTAGTT--ACACAC---TA-----ACAGAACCCCTGAACTGGACCAg-ggtggacaagcc-aggaactg---------tggg-ccaaattccacctc----ttgtttgctttgtgttggcc----aggtactaagac-------c-tttttttttttttcccagttt--gaaattgttttttaaaaa-ttaga
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       487662 192 -   4457520 ATATAGGGAGGAAATTCCACATATCACAATG--AATTCAA------------------------------------------------TT-GATTTAGTT--ACACAC---TA-----ACAGAACCACTGAACTGGACCAg-ggtggacaagcc-aggaactg---------tggg-ccaaattccacctc----ttgtttgctttgtgttggcc----agatactaagac-------c----tttttttttttccagttt--gaaattttttttaagaaa-ttaga
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154519184 170 - 158406734 ATACAGGGAGGAAATTCCACATATCACAGTG--AATTCAG------------------------------------------------CT-GATTCAGTT--ACACGC---TG-----ATAGA-----------GAACCGC------------C-AGGAAccg---------tggg-ccaaattccacctc----ttagttgctttgtgttgccc----atggactaagac-----------cttttttttataccagttt--gaacttgttttttttaaa-tttaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             351265 188 -   2682657 ATACAGGGAAGAAATTCCACATATCACAGTG--AATTCAG------------------------------------------------CT-GATTCAGTT--ACGCAC---TG-----ATAGA-----------GAACCGC------------C-AGGAACCG---------AGGG-CCAAATTCCGCCTCTTGATTGATTGCTTTGTGTTGCCCATGGATGGACTAAGACtttttttt-tttttttttttaaaCCAGTTT--GAACTTGTTTTTTTaaaa-tttaa
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       375504 149 -   2086007 ATACAGGGAGGAAATTTCACATATCACAGTG--AATTCAG------------------------------------------------TT-GATTCAGTT--ACACAC---TG-----ATAGA-----------GAACCAC------------C-AGGAAccg---------tggg-ccaaattccacctc----ttgattgctttgtgttgccc----atggactaagac-----------ttttt-----------------------tttttttttaa-tttaa
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       438616 177 +   3831555 ATACAGGGAGGAAATTCCACATATCACAGTG--AATTCAG------------------------------------------------TT-GATTCAGTT--ACACAC---TG-----ATAGA-----------GAACCGC------------C-AGGAAccg---------tggg-ccaaattccacctc----ttgattgctttgtgttgccc----atggactaagac---ctttt-tttttttttaaataccagttt--gaacttgttttttttaaa-tttaa
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             465119 216 +   3845361 GGATAGGGAAGAAATACCACACATGACATTGCAGATTCAGGAGAACTTTCCCTAGATG-----------------AGAAGGCAGCAGCTT-GATCCTCTT--ACGCAC---TG-----ACAGA-----------GGACGAA-AGGGCTCTAGCC-GGTGACAGGCCGATGCCTGGC-AAAGACGTgacctg----tggcttgctttgttttgctt----atgggctaagtg-------g-cttttgt---------agttt--cacattgtt-ttaaaaaa-taaaa
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60039615 236 -  91889043 AAATATGGAAGCAACAGCACATATCACATTGCAAAGTCAATAGAAATTTCCCTAATTAAAGAGACTGAC-ATAGTAAAAGACATCTAGTT-AATTCACTT--GCACAGTGATG-----ATAGAAGTCATTGCCTGGTTCAg-agtgggccagct-atggtctg----------agg-aaaaatgcagcctg----ctgcttgctgtctattgccc----gtgagctaagac-------t-agttttg--------catttt--aaatttttttttt--aaa-tcaaa
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             426271 231 +    563711 -AAAATGGAAGAAATACTCTGTTTCAGATTGCAAATACAATAGAAATTTTCCTAATTAAAGAGGCTAACAAAAAAAAGAGGTATCCAGTA-GATTCAGTT--GCACAC---TGGTGGCAAAGAACCACTGGACTAGACCAT-GATGAgcaagcc-aaatcttg---------actg-cca---tctgcttt------------tttgtattacct----atgagctaagaa-------t-ggttttta-------catttt--taaatagttttttaaaat-gcaaa
i dasNov3.JH562051          C 0 I 751
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116294258 680 + 116334831 I
e proCoq1.NW_012148396v1     13510288 949 +  16154928 I

a score=551443.000000
s hg38.chr15_KI270851v1_alt    189549 52 +    263054 agaagtatatta-ttttggcacatgaaaattacatgaagctaaaattgtagca-
s panTro5.chr15              73802504 52 -  83230942 ataagtatatta-ttttggcacatgaaaattacatgaagctaaaattgtagca-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74106288 52 -  99763055 agaagtatatta-ttttggcacatgaaaattacatgaagctaaaattgtagca-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       154750 52 -    281578 agaagtatatta-ttttggcacatgaaaattacatgaagctaaaattgtagca-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71013683 51 + 121039945 --aagtgtattatttttgacacatgaaaattacatgaagctaaaattgtagca-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164323507 53 - 169600520 agaagtatattatttttgacacatgaaaattacatgaagttaaaattgtagca-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165644470 53 - 171882078 agaagtatattatttttgacacatgaaaattacatgaagttaaaattgtagca-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       498922 53 +   2379783 agaagtatattatttttgacacatgaaaattacatgaagttaaaattgtagca-
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       456004 53 +   4116138 agaagtatattatttttgacacatgaaaattacaggaagttaaaattgtagca-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53888306 53 +  58131712 agaagtatattatttttgacacatgaaaattacatgaagttaaaattgtagca-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       508807 53 -   3636681 agaagtatattatttttgacacatgaaaattacaggaagttaaaattgtagca-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       487854 53 -   4457520 agaaatatattatttttgacacatgaaaattacattaagttaaaattgtagca-
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154519354 53 - 158406734 agaagtatattattttcgacacacaaaaattacgtgaagtacaaattgtagta-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             351453 53 -   2682657 agaagtgtattatttttgacacacaaaaattacgtggagttaagattgtagta-
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       375653 53 -   2086007 agaagtatattatttttgacacacaaagattacgtgaagttaagattgtagta-
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       438793 53 +   3831555 agaagtatattatttttgacacacaaaaatcacgtgaagttaaaattgtagta-
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             465335 52 +   3845361 agcagga-aatatttttgacacataaatattacatgaagtttaaatggcagca-
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60039851 51 -  91889043 agaa---taataagtttaataaatggaaattatatgaagtttaaattcctgcat
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116294258 680 + 116334831 I
e proCoq1.NW_012148396v1     13510288 949 +  16154928 I
e dasNov3.JH562051             426502 751 +    563711 I

a score=1990602.000000
s hg38.chr15_KI270851v1_alt    189601 247 +    263054 cc-ataaataaagttttacaggagcacag-ccacacctgttgcttta-------tctgtggttactttttgtgctacagcagcagagttgagtatttgcgac--agacagcatggcctg-aaagactcaaatgttcactct------------------------------------------------ctggcacttgaggaaga-gcttgctggcTGCCGGGCTTCCCCTGCTTCGGGGCTTCTCCCCTCGTCGCACTCTCACTT---------------------TGTCTTT--TTGTT---------C-----------TGCCAG-------------GGTGAT--CA----TT----------------------TCACTCTTGTTG--
s panTro5.chr15              73802556 190 -  83230942 cc-ataaataaagttttacaggagcacag-ccacac-tgttgcatta-------tctgtggttactttttgtgctacagcagcagagttgagtatttg--ac--agactgcatggcc--------------------------------------------------------------------------------------------------------GGGCTTCCCGTGCTTTGGGGCTTCTCCCCTCGTCGCACTCTCACTT---------------------TGTCTTT--TTGTT---------C-----------TGCCAG-------------GGTGAT--CA----TT----------------------TCACTCTTGTTG--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74106340 247 -  99763055 cc-ataaataaagttttacaggagcacag-ccacacctgttgcttta-------tctgtggttactttttgtgctacagcagcagagttgagtatttgcgac--agactgcatggcctg-aaagactcaaatgttcactct------------------------------------------------ctggcacttgaggaata-gcttgctggcTGCCGGGCTTCCCGTGCTTTGGGGCTTCTCCCCTCGTCGCACTCTCACTT---------------------TGTCTTT--TTGTT---------C-----------TGCCAG-------------GGTGAT--CA----TT----------------------TCACTCTTGTTG--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       154802 247 -    281578 cc-ataaataaagttttacaggagcacag-ccacacctgttgcttta-------tctgtggttactttttgtgctacagcagcagaattgagtatttgcgac--agactgcgtggcctg-aaagactcaaatgttcactct------------------------------------------------ctggcacttgaggaaga-gcttgctggcTGCCGGGCTTCCCGTGCTTTGGGGCTTCTCCCCTCGTCGCACTCTCACTT---------------------TGTCTTT--TTGTT---------C-----------TGCCAG-------------GGTGAT--CA----TT----------------------TCACTCTTGTTG--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71013734 245 + 121039945 cc-ataaataaagttttacgggagcacag-ccacacctgttgcttta-------tctgtggttactttttgtgctacagcagcagagttgagtatttgcaac--agactgcatggcctg-aaagactcaaatgttcactct------------------------------------------------ctggcacttgaggaaga-gctttctggcTGCCAGGCTTCCCTTGCTTCAGGGCTTCTCCCCTCATCGCACTCTCACTT---------------------TGTGTTT--TTGTT---------C-----------TGCCAT-------------GGTGAT--CA----TT----------------------TCACTCTTGT----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164323560 287 - 169600520 cc-ataaataaagttttatgggagcacag-ccacacctcttgtttta-------tttgtggttactttttgtgctacagcagcagagttgagtatttgcaat--agactgcatggcctg-aaagact----CATTCCCCCGCTGGCGCTTGAGGAAGAGCTCGCTCTGAAAGACTCAAGCGTTCGCTCTCCGGCGCTTGAGG-AGA-GCTCGCTGGCCGCCGGGCTTCCCCGGCTTCGGGGCTTCTCCCCGTGTCGCACTCTCAGTT---------------------TGTCTTT--TTGTT---------C-----------TGCC----------------TTGGT--CA----TT----------------------TCACTTTTGTGG--
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              165644523 288 - 171882078 cc-ataaataaagttttatgggagcacag-ccacacctcttgtttta-------tttgtggttactttttgtgctacagcagcagagttgagtatttgcaat--agactgcatggcctg-aaagact----CATTCCCCCACCGGCGCTTGAGGAAGAGCTCGCTCTGAAAGACTTAAGCGTTCGCTCTCCGGCGCTTGAGGAAGA-GCTCGCTGGCCGCCGGGCTTCCCCGGCTTCGGGGCTTCTCCCCGTGTCGCACTCTCAGTT---------------------TGTCTTT--TTGTT---------C-----------TGCC----------------TTGGT--CA----TT----------------------TCACTTTTGTGG--
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011934v1       498975 240 +   2379783 cc-ataaataaagttttatgggagcacag-ccacacctcttgtttta-------tttgtggttactttttgtgctacagcagcagagttgagtatttgcaat--agactgcatggcctg-aaagact----CATTCCCCCG------------------------------------------------CCGGCGCTTGAGGAAGA-GCTCGCTGGCCGCCGGGCTTCCCCGGCTTCGGGGCTTCTCCCCGTGTCGCACTCTCAGTT---------------------TGTCTTT--TTGTT---------C-----------TGCC----------------TTGGT--CA----TT----------------------TCACTTTTGTGG--
i macNem1.NW_012011934v1    C 0 I 1
s cerAty1.NW_012001462v1       456057 295 +   4116138 cc-ataaataaagttttatgggagcacag-ccacccctcttgtttta-------tttgtggttactttttgtgctacagcagcagagttgagtatttgcaat--agactgcatggcctg-aaagactcaaacattcacCCGCCAGCGCTTGAGGAAGAGCTCGCTCTGAAAGACTCAAGCGTTCGCTCTCCGGCGCTTGAGGAAGA-GCTCGCTGGCCGCCGGGCTTCCCCGGCTTCGGGGCTTCTCCCCGTGTCGCACTCTCAGTT---------------------TGTCTTT--TTGTT---------C-----------TGCCGT-------------GGTGGT--CA----TT----------------------TCACTTTTGTGG--
i cerAty1.NW_012001462v1    C 0 I 1
s chlSab2.chr26              53888359 295 +  58131712 cc-ataaataaagttttatgggagcacag-ccacacctcttgtttta-------tttgtggttactttttgtgctacagcagcagagttgagtatttgcaat--agactgcatggcctg-aaagactcacacattcacccgccggcgcttgaggaagagctcgcTCTGAAAGACTCAAGCGTTCGCTCTCCGGCGCTTGAGGAAGA-GCTCACTGGCCGCCGAGCTTCCCCGGCTTCGGGGCTTCTCCCCGTGTCGCACTCTCAGTT---------------------TGTCTTT--TTGTT---------C-----------TGCCGT-------------GGTGGT--CA----TT----------------------TCACTTTTGTGG--
i chlSab2.chr26             C 0 I 1
s manLeu1.NW_012102332v1       508860 247 -   3636681 cc-ataaataaagttttatgggagcacag-ccacacctcttgtttta-------tttgtggttactttttgtgctccagcagcagagttgagtatttgcaat--agactgcatggcctg-aaagactcaaacattcacccg------------------------------------------------ccagcgcttgaggaaga-gctcgctggccGCCGGGCTTCCCCGGCTTCGGGGCTTCTCCCCGTGTCGCACTCTCAGTT---------------------TGTCTTT--TTGTT---------C-----------TGCCGT-------------GGTGGT--CA----TT----------------------TCACTTTTGTGG--
i manLeu1.NW_012102332v1    C 0 I 1
s colAng1.NW_012115278v1       487907 244 -   4457520 cc-ataaataaagtgttatgggagcacag-ccacacctgttgtttta-------tttctggttactttttgtgctacagcagcagagttgagtatttgcaat--agactgcatggcctg-aaagactcaaatattcgctct------------------------------------------------ccggcacttga---aga-gctcgctagccgctgGGCTTCCCCGGCTTCGGGGCTTCTCCCCTTGTCGCACTCTCAGTT---------------------TGTCTTT--TTGTT---------C-----------TGCTGT-------------GGTGAT--CA----TT----------------------TCACTTTTGTGG--
i colAng1.NW_012115278v1    C 0 I 1
s calJac3.chr6              154519407 246 - 158406734 gc-ataagtgaagttttattggagcacag-ccacagctactgattta-------tctgtgtttacgttttgtgctgcaacaggggagttgagtatttgcagc--agactgcctggcctgaaaagactgtaatgttccctcc------------------------------------------------ctggcacttgaggcaga-gcttgctggcTGCCGGGCGCCCC-TGCGGCAAGGCTTCTCCCT-TGTCGTGCTCTCACTT---------------------TGTCTTT--CTGTT---------C-----------TGACAT-------------GGCGAT--CA----TT----------------------TCACTTCTGTCA--
i calJac3.chr6              C 0 I 1
s saiBol1.JH378292             351506 240 -   2682657 gc-gtaaatgaagttttattgg-----ag-ccacacctgttgattta-------tctgtggttactttttgtgctgcagcaggagagttgagtatctgcagc--agactgcctggcctggaaagactctgatgttccctcc------------------------------------------------ctggcacttggggaaga-gcttgctggcTGCCAGGCGCCCC-TGCTTCAGGGCTTCTCCCA-TGTTACAATCTCAGTT---------------------T-TCTTT--CTGTT---------C-----------TGACAT-------------GGTGAT--CA----TT----------------------TCACTTTTGTCA--
i saiBol1.JH378292          C 0 I 1
s cebCap1.NW_016107707v1       375706 245 -   2086007 gc-ataaatgaagttttattggagcgcag-ccacacctattcattta-------tctgtggttactttttgtgctgcaagaggagagttgagcatttgcagc--agactgcctggcctgaaaagactctgatgttccctcc------------------------------------------------tt-gcccttGAGGAGGA-GCCTGCTGGCTGCCAGGCGCCCC-TGCTTCAGGGCTTCTCCCC-TGTTACGCTCTCACTT---------------------TGTCTTT--CTGTT---------C-----------TGACAT-------------GGCAAT--CA----TT----------------------TCCCTTGTGTCA--
i cebCap1.NW_016107707v1    C 0 I 1
s aotNan1.NW_018503298v1       438846 243 +   3831555 gc-ataaatgaggttttattggagcacag-ccacacctattgattta-------tctgtggttactttttgtgctgcaacaggagagttgagtatttgcagc--agactgcctggcctgaaaagactCTGATGTTCCCTCC------------------------------------------------CCGGCACCTGAGGAAGA-GCTACCTGGCTGCCAGGCTCCCC---CTTCAGGGCATCTCCCT-TGTTGCACTCTCACTT---------------------TGTC-TT--CTGTT---------C-----------TGACAC-------------GGCAAT--CA----TT----------------------TCACTTTTGTCA--
i aotNan1.NW_018503298v1    C 0 I 1
s otoGar3.GL873689             465387 258 +   3845361 tctataaataaggtttttctgggttacaa-tca-----------------------------tacttttagtgcaacagtagcagagtcgagtatttacaat--ggactgaaagactcc-agagactcagctgttcactgt------------------------------------------------ccagcacttgtaggaaa-gcttgctgacgcctgGGCCGCCC-----TCCTTGCTGCTCCCT-CACAGCACTCACCTGTGCCAACACAGTGACCAGGTGCTGTCATTGCCTGTC---------C-----------TGTGAGACCACGAGAGATAGCTGATAGCT----CT----------------------TCCTTTTTGTTG--
i otoGar3.GL873689          C 0 I 1
s canFam3.chr3               60039902 238 -  91889043 cc-atgattaaaat--------------------------------------------tagctgcttttcattctgcaacagcaggattgagtatttgcaat--agac----tggcctgcaaagactaaaatattcaccat------------------------------------------------ctggctctttaagcaaatgtttgctgatt-cTGGGCTTCCCTTTCCGTAGGATCTGCCCTATCATAGCACTCTTAC-----------------------TGTCTTT--CTGTT---------CATGATGTGAAATGACAA-------------TATTAT--TA----TTGAATGTCATGTGAAAATAATGATAATTTTTACT---
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             427253 275 +    563711 cc-ataaataaagtttcattggagcacaatttacaactattcatttactttttgtctatggttacttttctttct------gcaaaattgag-agttgcagcagagactttacggcttt-caagcctagcatattcattct------------------------------------------------ctggccctttaagaaaaagtttgccaaaccctAGGCTCTACAGTCTTCAGTGCTCTCTCCACTGTAGCACTCTGACCG---------------------CGTCTTT--CTGTCTGTTGAGGAC-----------TGTTAT----TATGAGACCGGTTAG--CATAGTTT----------------------TAACTTCCTATATT
i dasNov3.JH562051          I 751 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116294258 680 + 116334831 I
e proCoq1.NW_012148396v1     13510288 949 +  16154928 I

a score=1020265.000000
s hg38.chr15_KI270851v1_alt    189848  88 +    263054 TTGAGCATTGCAATTTATAATG-TTGT-----------------TCA-GATGTTTATTTGAATGAAATATTTGT--------CCTTCATGTAAATCTAAATATGTCTTAATTTAA
s panTro5.chr15              73802746  88 -  83230942 TTGAGCATTGCAATTTATAATG-TTGT-----------------TCA-GATGTTTATTTGAATGAAATATTTGT--------CCTTCATGTAAATCTAAGTATTTCTTAATTTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74106587  88 -  99763055 TTGAGCATTGCAATTTATAATG-TTGT-----------------TCA-GATGTTTATTTGAATGAAATATTTGT--------CCTTCATGTAAATCTAAATATGTCTTAATTTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       155049  88 -    281578 TTGAGCATTGCAATTTATAATG-TTGT-----------------TCA-GATGTTTATTTGAATGAAATATTTGT--------CCTTCATGAAAATCTAAGTATTTCTTAATTTAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71013979  88 + 121039945 TTGAGCATTGCAATTTATAATG-TTGT-----------------TCA-GATGTTTATTTGAATGAAATATTTGT--------CCTTCATGCAAATCTAAGTATTTCTTAATTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164323848  88 - 169600520 TTGAGCATTGCAATTTATAATG-GTGT-----------------TCA-CATGTTTATTTGAATGAAATATTTGT--------CCTTCATGCAAATCTAAATATTTCTTAATTTAA
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              165644812  88 - 171882078 TTGAGCATTGCAATTTATAATG-GTGT-----------------TCA-CATGTTTATTTGAATGAAATATTTGT--------CCTTCATGCAAATCTAAATATTTCTTAATTTAA
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011934v1       499216  88 +   2379783 TTGAGCATTGCAATTTATAATG-GTGT-----------------TCA-CATGTTTATTTGAATGAAATATTTGT--------CCTTCATGCAAATCTAAATATTTCTTAATTTAA
i macNem1.NW_012011934v1    I 1 C 0
s cerAty1.NW_012001462v1       456353  88 +   4116138 TTGAGCATTGCAATTTATAATG-GTGT-----------------TCA-CATGTTTATTTGAATGAAATATTTGT--------CCTTCATGCAAATCTAAATATTTCTTAATTTAA
i cerAty1.NW_012001462v1    I 1 C 0
s chlSab2.chr26              53888655  88 +  58131712 TTGAGCGTTGCAATTTATAATG-GTGT-----------------TCA-CATGTTTATTTGAATGAAATATTTGT--------CCTTCATGCAAATCTAAATATTTCTTAATTTAA
i chlSab2.chr26             I 1 C 0
s manLeu1.NW_012102332v1       509108  88 -   3636681 TTGAGCATTGCAATTTATAATG-GTGT-----------------TCA-CATGTTTATTTGAATGAAATATTTGT--------CCTTCATGCAAATCTAAATATTTCTTAATTTAA
i manLeu1.NW_012102332v1    I 1 C 0
s colAng1.NW_012115278v1       488152  88 -   4457520 TTGAGCATTGCAATTTATAATG-GTGT-----------------TCA-CATGTTTATTTGAATGAAATATTTGT--------CCTTCATGCAAATCTAAATATTTCTTAATTTAA
i colAng1.NW_012115278v1    I 1 C 0
s calJac3.chr6              154519654  81 - 158406734 TTCAGCATTTTAGTTTATAATG-T--------------------TCA-CATGTTTATTTGAATGAAATACTTGT--------CCTTCATGCAAGTCTGAG----TCttaatttaa
i calJac3.chr6              I 1 C 0
s saiBol1.JH378292             351747 100 -   2682657 TTCAGCATTGTAGTTTATAATG-TCATTTCAGCATTGTAGTTTATAA-TGTGTTTATTTGAATGAAATGTTTGT---------CTTCATGCAAGTCTAAG----TCTTAATTTGC
i saiBol1.JH378292          I 1 C 0
s cebCap1.NW_016107707v1       375952  81 -   2086007 TTCAGCATTGTAATTTATAATG-T--------------------TCACCATGTTTATTTGAATGAAATATTTGT---------CTTCATGCAAGTCTAAG----TCTTAATTTAA
i cebCap1.NW_016107707v1    I 1 C 0
s aotNan1.NW_018503298v1       439090  77 +   3831555 TTCAGCATTGTAGTTTATAATG-T--------------------TCA-CATGTTTATTTGAATGAAATATTTGT--------CCTT----CAAGTCTAAG----TCTTAATTTAA
i aotNan1.NW_018503298v1    I 1 C 0
s proCoq1.NW_012148396v1     13511237  86 +  16154928 TTGAGCATTGCAGTTTACAATG-TTGT-----------------TCA-C--GTTTCTTTGAATAAAATTTTCGT--------CTTTCACGCAAATATAAGTGTTTCTTAATTTAA
i proCoq1.NW_012148396v1    I 949 C 0
s otoGar3.GL873689             465646  89 +   3845361 TTGAGCATTATAGTTTATAATGTTTGT-----------------TCA-CATGTTTCTTTGAATAAAATATTCAG--------CTTTCTTGCaaatttaagtatttcttaatttaa
i otoGar3.GL873689          I 1 C 0
s canFam3.chr3               60040140  92 -  91889043 ---AGCTTTTCAGTTGACAGTG-ATAT-----------------TTG-CATATTTGTTTTAGTAAAATATTCAGGTGCTTTAACTTTATGCAGATTTAA-TATATCGtaatttaa
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             427528  95 +    563711 TTAAACACTTCAGTTGGTAGTA-TAGT-----------------TTG-CATGTTTCCTTGGGCTAAATATTCATGTCTTCCAACTTCATACAAGtttaaatatttcttaattaa-
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56135986 558 + 145441459 I
e micMur3.chr9              116294258 680 + 116334831 I

a score=161051.000000
s hg38.chr15_KI270851v1_alt    189936 17 +    263054 AATTAATATTTAAGTG-T
s panTro5.chr15              73802834 17 -  83230942 AATTAATATTTAAGTG-T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74106675 17 -  99763055 AATTAATATTTAAGTG-T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       155137 17 -    281578 AATTAATATTTAAGTG-T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71014067 16 + 121039945 AATT-ATATTTAAGTG-T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164323936 16 - 169600520 AATT-ATATTTAAGTG-T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165644900 16 - 171882078 AATT-ATATTTAAGTG-T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       499304 16 +   2379783 AATT-ATATTTAAGTG-T
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       456441 16 +   4116138 AATT-ATATTTAAGTG-T
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53888743 16 +  58131712 AATT-ATATTTAAGTG-T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       509196 16 -   3636681 AATT-ATATTTAAGTG-T
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       488240 16 -   4457520 AATT-ATATTTAAGTG-T
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154519735 16 - 158406734 aatt-atatttaaGTG-T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             351847 11 -   2682657 AA-------TTAAGTGTT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       376033 16 -   2086007 AATT-ATATTTAAGTG-T
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       439167 16 +   3831555 AATT-ATATTTAAGTG-T
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13511323 16 +  16154928 AAAT-ATATTTAAGTA-A
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             465735 16 +   3845361 aaaa-attattaagta-a
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56136544 17 + 145441459 aattaaaagttatata-a
i mm10.chr7                 I 558 C 0
s canFam3.chr3               60040232 15 -  91889043 aatt-atgtttaaatg--
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             427623 17 +    563711 aatttttatttaaGTA-A
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116294258 680 + 116334831 I

a score=3903644.000000
s hg38.chr15_KI270851v1_alt    189953 209 +    263054 ATGATTTTTATAGTGAATGATGTTTTAAAA-CACAGTTCCTAAGAAGCCAGAATCTACGGATGATGAAGAAAAAATTGGAAACGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTCCAATAAATGTGGACAAGAGACCCATTGCAA-TTAAATCACCCAAGGTGCGGTATTTTCTGTGATTCTGAGGTTGGCTGAATAGAA
s panTro5.chr15              73802851 209 -  83230942 ATGATTTTTATAGTGAATGATGTTTTAAAA-CACAGTTCCTAAGAAGCCAGAATCTACGGATGATGAAGAAAAAATTGGAAACGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTCCAATAAATGTGGACAAGAGACCCATTGCAA-TTAAATCACCCAAGGTGCAGTATTTTCTGTGATTCTGAGGTTGGCTGAATAGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74106692 210 -  99763055 ATGATTTTTATAGTGAATGATGTTTTAAAA-CACAGTTCCTAAGAAGCCAGAATCTACGGATGATGAAGAAAAAATTGGAAATGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTCCAATAAATGTGGACAAGAGACCCATTGCAATTTAAATCACCCAAGGTGCAGTATTTTCTGTGATTCTGAGGTTGGCTGAATAGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       155154 208 -    281578 ATGATTTTTATAGTGAATGATGTTTTAAAA-CACAGTTCCTAAGAAGCCAGAATCTTCAGATGATGAAG-AAAAATTGGAAACGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTCCAATAAATGTGGACAAGAGACCCATTGCAA-TTAAATCACCCAAGGTGCAGTATTTTCTGTGATTCTGAGGTTGGCTGAATAGAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71014083 208 + 121039945 ATGATTTTTATAGTGAATG-TGTTTTAAAA-CACAGTTCCTAAGAAGCCAGAATCTACGGATGATGAAGAAAAAATTGGAAACGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTCCAATAAATGTGGACAAGAGACCCATTGCAA-TTAAATCACCCAAGGTGCAGTATTTTCTGTGATTCTGAGGTTAGCTGAATAGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164323952 209 - 169600520 ATGATTTTTATAGAAAATGATGTTTTAAAA-TACAGTTCCTAAGAAGCCAGAATCTACGGATGACGAAGAAAAAATTGGAAATGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTCCAATAAATGTGGACAAGAGACCCATTGCAA-TTAAATCACCCAAGGTGCAGTATTTTCTGTGATTCTGAGGTTAGCTGAATAGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165644916 209 - 171882078 ATGATTTTTATAGAAAATGATGTTTTAAAA-TACAGTTCCTAAGAAGCCAGAATCTACGGATGACGAAGAAAAAATTGGAAATGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTCCAATAAATGTGGACAAGAGACCCATTGCAA-TTAAATCACCCAAGGTGCAGTATTTTCTGTGATTCTGAGGTTAGCTGAATAGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       499320 209 +   2379783 ATGATTTTTATAGAAAATGATGTTTTAAAA-TACAGTTCCTAAGAAGCCAGAATCTACGGATGACGAAGAAAAAATTGGAAATGAAGAGAGCGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTCCAATAAATGTGGACAAGAGACCCATTGCAA-TTAAATCACCCAAGGTGCAGTATTTTCTGTGATTCTGAGGTTAGCTGAATAGAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       456457 209 +   4116138 ATGATTTTTATAGAAAATGATGTTTTAAAA-TACAGTTCCTAAGAAGCCAGAATCTACGGATGATGAGGAAAAAATTGGAAATGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTCCAATAAATGTGGACAAGAGACCCATTGCAA-TTAAATCACCCAAGGTGCAGTATTTTCTGTGATTCTGAGGTTAGCTGAATGGAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53888759 209 +  58131712 ATGATTTTTATAGAAAATGATGTTTTAAAA-TACAGTTCCTAAGAAGCCAGAATCTACGGATGATGAAGAAAAAATTGGAAATGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTCCAATAAATGTGGACAAGAGACCCATTGCAA-TTAAATCACCCAAGGTGCAGTATTTTCTGTGATTCTGAGGTTAGCTGAATAGAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       509212 209 -   3636681 ATGATTTTTATAGAAAATGATGTTTTAAAA-TACAGTTCCTAAGAAGCCAGAATCTACGGATGATGAAGAAAAAATTGGAAATGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTCCAATAAATGTGGACAAGAGACCCATTGCAA-TTAAATCACCCAAGGTGCAGTATTTTCTGTGATTCTGAGGTTAGCTGAATAGAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       488256 209 -   4457520 ATGATTTTTATAGAAAATGATGTCTTAAAA-TACAGTTCCTAAGAAGCCAGAATCTACGGATGATGAAGAAAAAATTGGAAACGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTCCAATAAATGTGGACAAGAGACCCATTGCAA-TTAAATCGCCCAAGGTGCAGTATTTTCTGTAATTCTGAGGTTAGCTGAATAGAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154519751 209 - 158406734 ATGATTTTTATAGCGAATCATGTTTTAAAA-CACAGTTCCTAAGAAGCCGGAATGTACAGATGATGAAGAAAAAATTGGAAATGAAGAGAGCGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTCCAATAAATGTGGACAAGAGACCCATTGCAA-TTAAATCACCCAAGGTGCAGTATTTTCTGTGATTCCGAGATTAGCTGAATAGAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             351858 209 -   2682657 AGGATTTTTATAGTGAGTCATGTTTTAAAA-CACAGTTCCTAAGAAGCCGGAATCTACAGATGATGAAGAAAAAATTGGAAATGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTCCAATAAATGTGGACAAGAGACCCATTGCAA-TCAAATCACCCAAGGTGCAGTATTTTCTGTGATTCTGAGATTAGCTGAACAGAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       376049 209 -   2086007 ATGATTTTTATAGTGAATCATGTTTTAAAA-CACAGTTCCTAAGAAGCCGGAATCTACAGATGATGAAGAAAAAATTGGAAACGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTCCAATAAATGTGGACAAGAGACCCATTGCAA-TTAAATCACCCAAGGTGCAGTATTTTCTGTGATTCTGAGATTAGCTGAATAGAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       439183 209 +   3831555 ATGATTTTTATAGTGAATCATGTTTTAAAA-CACAGTTCCTAAGAAGCCAGAATCTACAGATGATGAAGAAAAAATTGGAAATGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTCCAATAAATGTGGACAAGAGACCCATTGCAA-TTAAATCACCCAAGGTGCAGTATTTTCTGTGATTCTGAGATTAGCTGAATAGAA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116294938 209 + 116334831 ATGATTTTTATAATGAATGATGTTTTTAAA-CATAGTTCCTAAGAAACCAGAATCCACTGATGATGAAGAGAAAATTGAAAATGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTACGATAAATGTGGACAAAAGACCCATTACAA-TTAAATCACCCAAGGTGCAGTATTTTCTTTGATTCTGAGATTGAGTGACTGGAA
i micMur3.chr9              I 680 I 94
s proCoq1.NW_012148396v1     13511339 209 +  16154928 ATGATTTTTATAATGAATGATGTTTTTAAA-CATAGTTCCTAAGAAGCCAGAATCCACTGATGATGAAGAAAAAATTGAAAATGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTACGATAAATGTGGACAAAAGACCCATTACAA-TTAAATCGCCCAAGGTGCAGTATTTTCTTTGATTCTGAGATTGAATGCCTGGAA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             465751 209 +   3845361 ataatttttataaCGAATGATGTTTTTAAA-CATAGTTCCTAAGAAGCCAGAATCTACTGATGATGAAGAAAAAATTGGAAATGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCATAGTCCAATAAATGTGGACAAAAGACCCATTACTA-TTAAATCACCCAAGGTGCAGTATTTTCTGTGATTCTGAGATTGGCCGACTGGAA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56136561 198 + 145441459 atgattttta----------tgtttttaat-tataGTTCCTAAGAAACCAGAATCTATTGATAGTGAAGAAAAAATTGGAAATGAAGAGAGTGATTTAGAAGAAGCTTGTGTTTTGCCTCATAGTCCTATAAATGTAGACAAAAGACCTATTTCTA-TGAAGTCTCCCAAGGTGAAGTATGTTCTGTGTTTCTTAGATT-GCATTATAGAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60040247 205 -  91889043 ----attttataattaatGATGTTTTTAAT-CATAGTTCCTAAGAAGCCAGAATCTACTGATGATGAAGAAAAAATTGGAAATGAAGAAAGTGATTTAGAAGAAGCTTGCATTTTGCCTCACAGTCCTATAAGTGTGGACAAAAGACCCATTACAA-TTAAATCTCCTAAGGTAAAGCATTTACTATGATTTTGAGGCTGGCTAAATAAAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             427640 210 +    563711 GTGGTTTTTATAATGAATGCTTTTTTAAAATCATAGTTCCTAAAAAGCCAGAATCTACTGATGATGAAGAAAAAATTGGAAATGAAGAGAGTGATTTAGAAGAAGCTTGCATTTTGCCTCACAGTCCTATAAATATGGATAAAAGACCCATTACAA-TCAAATCACCCAAGGTAAAGTATTTTCTCTGATTTTGAGACTAAGTGGATAGAA
i dasNov3.JH562051          C 0 C 0

a score=346987.000000
s hg38.chr15_KI270851v1_alt    190162 26 +    263054 TCGTAGCATGTAGCACAGGAATCCAC
s panTro5.chr15              73803060 26 -  83230942 TCATAGCATGTAGCACAGGAATCCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74106902 26 -  99763055 TCATAGCATGTAGCACAGGAATCCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       155362 26 -    281578 TCATAGCATGTAGCAAAGGAATCCAC
i gorGor5.CYUI01000141v1    C 0 I 1
s nomLeu3.chr6               71014291 26 + 121039945 TCATAGCATGTAGCAGAGGAATCCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164324161 26 - 169600520 TCATAGCACGTAGCACAGGAATCCCC
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              165645125 26 - 171882078 TCATAGCACGTAGCACAGGAATCCCC
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011934v1       499529 26 +   2379783 TCATAGCACGTAGCACAGGAATCCCC
i macNem1.NW_012011934v1    C 0 I 1
s cerAty1.NW_012001462v1       456666 26 +   4116138 TCATAGCACGTAGCACAGGAATCCCC
i cerAty1.NW_012001462v1    C 0 I 1
s chlSab2.chr26              53888968 26 +  58131712 TCGTAGCACGTAGCACAGGAATCCCC
i chlSab2.chr26             C 0 I 1
s manLeu1.NW_012102332v1       509421 26 -   3636681 TCATAGCACGTAGCACAGGAATCCCC
i manLeu1.NW_012102332v1    C 0 I 1
s colAng1.NW_012115278v1       488465 26 -   4457520 TCATAGCACGTAGCAAAGGAATCCCC
i colAng1.NW_012115278v1    C 0 I 1
s calJac3.chr6              154519960 26 - 158406734 TCATAGCATGTAGCAAAGGAATCCAC
i calJac3.chr6              C 0 I 1
s saiBol1.JH378292             352067 26 -   2682657 TCTTAGCATGTAGCAAAGGAATCCAC
i saiBol1.JH378292          C 0 I 1
s cebCap1.NW_016107707v1       376258 26 -   2086007 TCATAGCGTGTAGCAAAGGAATCCAC
i cebCap1.NW_016107707v1    C 0 I 1
s aotNan1.NW_018503298v1       439392 26 +   3831555 TCATAGCGTGTAGCAAAGGAATCCAC
i aotNan1.NW_018503298v1    C 0 I 1
s proCoq1.NW_012148396v1     13511548 26 +  16154928 ACACAGCACATAGCAAAGGAATCCAT
i proCoq1.NW_012148396v1    C 0 I 57
s otoGar3.GL873689             465960 26 +   3845361 ACACAGCACATAGCGAAGGAATCCAT
i otoGar3.GL873689          C 0 I 11
s mm10.chr7                  56136759 23 + 145441459 --ATACTACACA-CAAATGAATCTCT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60040452 25 -  91889043 ACAAAGCACCTA-CAAAGGAACCCAC
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             427850 26 +    563711 ACACAACACATAGCACGTGAATCCCC
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116295147 94 + 116334831 I

a score=478023.000000
s hg38.chr15_KI270851v1_alt    190188 59 +    263054 -AGTCTTGTACCTCTGTACCTGAGCATCTGGAGGGA-----GGGACGGGCGGT-------TGTTA--------GAAAT-AC
s panTro5.chr15              73803086 56 -  83230942 -AGTCTTGTACCTCTGTACCTGAGCATCTGGAGGGA-----GGGACGGGCG----------GTTA--------GAAAT-AC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74106928 56 -  99763055 -AGTCTTGTACCTCTGTACCTGAGCATCTGGAGGGA-----GGGACGGGCG----------GTTA--------GAAAT-AC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       155389 59 -    281578 -AGTCTTGTACCTCTGTACCTGAGCATCTGGAGGGA-----GGGACGGGCAGT-------TGTTA--------GAAAT-AC
i gorGor5.CYUI01000141v1    I 1 C 0
s nomLeu3.chr6               71014317 59 + 121039945 -AGTCTTGTACCTCTGTACCTGAGCATGCAGAGGGA-----GGGATGGGAGGT-------TGTTA--------GAAAT-AG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164324188 59 - 169600520 -AGTCTTGTACCTCTGTACCTGAGCGTCTGGAGGGA-----GGGACGGGTGGT-------GGTTA--------GAAAT-AC
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              165645152 59 - 171882078 -AGTCTTGTACCTCTGTACCTGAGCGTCTGGAGGGA-----GGGACGGGTGGT-------GGTTA--------GAAAT-AC
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011934v1       499556 59 +   2379783 -AGTCTTGTACCTCTGTACCTGAGCGTCTGGAGGGA-----GGGACGGGTGGT-------GGTTA--------GAAAT-AC
i macNem1.NW_012011934v1    I 1 C 0
s cerAty1.NW_012001462v1       456693 59 +   4116138 -AGTCTTGTACCTCTCTACCTGAGCGTCTGGAGGGA-----GGGACGGGTGGT-------GGTTA--------GAAGT-AC
i cerAty1.NW_012001462v1    I 1 C 0
s chlSab2.chr26              53888995 52 +  58131712 -AGTCTTG--------TACCTGAGCGTCTGGAGGGA-----GGGACGGGTGGT-------GGTTA--------GAAATAAC
i chlSab2.chr26             I 1 C 0
s manLeu1.NW_012102332v1       509448 59 -   3636681 -AGTCTTGTACCTCTCTACCTGAGCGTCTGGAGGGA-----GGGACGGGTGGT-------GGTTA--------GAAAT-AC
i manLeu1.NW_012102332v1    I 1 C 0
s colAng1.NW_012115278v1       488492 59 -   4457520 -AGTCTTGTACCTCTGTACCTGAACATCTGGAGGGA-----GGGACGGGTGGT-------TGTTA--------GAAAT-AC
i colAng1.NW_012115278v1    I 1 C 0
s calJac3.chr6              154519987 58 - 158406734 -CATCTCGTACCTCTGTACCTGAGCATCTGGAGGGA------GGGTGGGCAGT-------TTTCA--------GAAAA-AA
i calJac3.chr6              I 1 C 0
s saiBol1.JH378292             352094 57 -   2682657 -CATCTCGTACCTCTGTACCTGAGCATCTGGAGGGA-------GGTGGGCGGT-------TGTTA--------GAAAA-AA
i saiBol1.JH378292          I 1 C 0
s cebCap1.NW_016107707v1       376285 57 -   2086007 -CATCTCGTACCTCTGTACCAGAGCATCTGGAGGGA-------GGTGGGCGGT-------TGTTA--------GAAAA-AA
i cebCap1.NW_016107707v1    I 1 C 0
s aotNan1.NW_018503298v1       439419 58 +   3831555 -CGTCTCGTACCTCTGTACCTGAGCATCTGGAGGGA------GGGTGGGCGGT-------TGTTA--------GAAAA-AA
i aotNan1.NW_018503298v1    I 1 C 0
s otoGar3.GL873689             465997 61 +   3845361 -GGTGTTGTGCCTTAGTCCCTGAGTATCTCTAGGGC-----AGTGAGTGTAGT----TGGTGTTG--------AAGGG-A-
i otoGar3.GL873689          I 11 C 0
s mm10.chr7                  56136782 65 + 145441459 -GGTACCATGCTGTTGTA-CTAAACACCTGCAGGGT-----AGTGAGTGTGGTGTGTTGCTATTA--------TAAGT-GT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60040478 51 -  91889043 -AGTATTGTCACTTTATTCTT---CATAGAGAGTGT-----AGCATG-----T-------TACTG--------AAAGT-AT
i canFam3.chr3              I 1 I 7
s dasNov3.JH562051             427876 73 +    563711 AAGAGCTGTAGCTCTCTGTTCCAGCATCTGCAGGGTCATGGGGGCTGTGGGGC-------TGTTGTGGTACTCAGAGT-AC
i dasNov3.JH562051          C 0 I 9
e micMur3.chr9              116295147 94 + 116334831 I
e proCoq1.NW_012148396v1     13511574 57 +  16154928 I

a score=18380.000000
s hg38.chr15_KI270851v1_alt    190247 1 +    263054 G
s panTro5.chr15              73803142 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74106984 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       155448 1 -    281578 G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71014376 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164324247 1 - 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165645211 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       499615 1 +   2379783 G
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       456752 1 +   4116138 G
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53889047 1 +  58131712 G
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       509507 1 -   3636681 G
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       488551 1 -   4457520 G
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154520045 1 - 158406734 G
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             352151 1 -   2682657 G
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       376342 1 -   2086007 G
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       439477 1 +   3831555 G
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13511631 1 +  16154928 G
i proCoq1.NW_012148396v1    I 57 C 0
s otoGar3.GL873689             466058 1 +   3845361 G
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56136847 1 + 145441459 G
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60040536 1 -  91889043 A
i canFam3.chr3              I 7 C 0
s dasNov3.JH562051             427958 1 +    563711 G
i dasNov3.JH562051          I 9 C 0
e micMur3.chr9              116295147 94 + 116334831 I

a score=2504963.000000
s hg38.chr15_KI270851v1_alt    190248 177 +    263054 GC----CCCAGTGATGCTTCATGAACTTGACTTATGATG----TCCTGGTCAGAGCTGTAGCTGGAGAAGGGTTTCC-TTTTATTTTTGGTATTAGATTGTATCATTAATTATTCAC--------CAT----TC-ATTCCTTAAATATATTCTTTGTTCCAGAAACAGTGCTGGGCCCTGTGGCTGTTAATAT-----GAACCA
s panTro5.chr15              73803143 177 -  83230942 GC----CCCAGTGATGCTTCATGAACTTGACTTATGATG----TCCTGGTCAGAGCTGTAGCTGGAGAAGGGTTTCC-TTTTATTTTTGGTATTAGATTGTATCATTAATTATTCAC--------CAT----TC-ATTCCTTAAATATATTCTTTGTTCCAGAAACAGTGCTGGGCCCTGTGGCTATTAATAT-----GAACCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74106985 177 -  99763055 GC----CCCAGTGATGCTTCATGAACTTGACTTATGATG----TCCTGGTCAGAGCTGTAGCTGGAGAAGGGTTTCC-TTTTATTTTTGGTATTAGATTGTATCATTAATTATTCAC--------CAT----TC-ATTCCTTAAATATATTCTTTGTTCCAGAAACAGTGCTGGGCCCTGTGGCTATTAATAT-----GAACCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       155449 177 -    281578 GC----CCCAGTGATGCTTCATGAACTTGACTTATGATG----TCCTGGTCAGAGCTGTAGCTGGAGAAGGGTTTCC-TTTTATTTTTGGTACTAGATTGTATCATTAATTATTCAC--------CAT----TC-ATTCCTTAAATATATTCTTTGTTCCAGAAACAGTGCTGGGCCCTGTGGCTATTAATAT-----GAACCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71014377 173 + 121039945 GC----CCCAGTGATGCTTCATGAACTTGACTTATGATG----TCCTGGTCAGAGCTGTAGCTGGAGAAGGGTTTCT-TTTTATTTTTGGTACTAGATTATATC----ATTATTCAC--------CAT----TC-ATTCCCTAAATATATTCTTTGTTCCAGAAACAGTGCTGGGCCCTGTGGCTATTAATAT-----GAACCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164324248 176 - 169600520 GC----CCCAGGGATGCTTCATGAACTGGACTTACGATG----TCCTGGTCAGAGC-GTAGCTGGAGAAGGGTTTCC-TTTTATTTTTGGTACTAGATTGTGTCATTAATTATTCAC--------CAT----TC-ATTCCTTAACTATATTCTTTGTTCCAGAAACAGTGCTGGGCACTGTGGTTATTAATAT-----GAACCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165645212 176 - 171882078 GC----CCCAGGGATGCTTCATGAACTGGACTTACGATG----TCCTGGTCAGAGC-GTAGCTGGAGAAGGGTTTCC-TTTTATTTTTGGTACTAGATTGTGTCATTAATTATTCAC--------CAT----TC-ATTCCTTAACTATATTCTTTGTTCCAGAAACAGTGCTGGGCACTGTGGTTATTAATAT-----GAACCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       499616 177 +   2379783 GC----CCCAGGGATGCTTCATGAACTGGACTTACGATG----TCCTGGTCAGAGCTGTAGCTGGAGAAGGGTTTCC-TTTTATTTTTGGTACTAGATTGTGTCATTAATTATTCAC--------CAT----TC-ATTCCTTAACTGTATTCTTTGTTCCAGAAACAGTGCTGGGCACTGTGGTTATTAATAT-----GAACCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       456753 177 +   4116138 GC----CCCAGGGATGCTTCATGAACTGGACTTACGATG----TCCTGGTCAGAGCTGTAGCTGGAGAAGGGTTTCC-TTTTATTTTTGGTACTAGATTGTGTCATTAATTATTCAC--------TAT----TC-ATTCCTTAACTATATTCTTTGTTCCAGAAACAGTGCTGGGCACTGTGGTTATTAATAT-----GAACCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53889048 177 +  58131712 GC----CCCAGGGATGCTTCATGAACTGGACTTATGGTG----TCCTGGTCAGAGCTGTAGCTGGAGAAGGGTTTCC-TTTTATTTTTGGTACTAGATTGTGTCATTAATTATTCAC--------CAT----TC-ATTCCTTAACTATATTCTTTGTTCCAGAAACAGTGCTGGGCACTGTGGTTATTAATAT-----GAACCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       509508 177 -   3636681 GC----CCCAGGGATGCTTCATGAACTGGACTTACGATG----TCCTGGTCAGAGCTGTAGCTGGAGAAGGGTTTCC-TTTTAGTTTTGGTACTCGATTGTGCCATTAATTATTCAC--------CAT----TC-GTTCCTTAACGATATTCTTTGTTCCAGAAACAGTGCCGGGCACTGTGGTTATTAATAT-----GAACCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       488552 177 -   4457520 GC----CCCAGGGATGCTTCATGAACTTGACTTGTGATG----TCCTGGTCAGAGCTGTAGCTGGAGAAGGGTTTCC-TTTTATTTTTGGTACTAGAGTGTGTCATTAATTATTCAC--------CAT----TC-ATTCCTTAACTATATTCTTTGTTCCAGAAACAGTGCTGGGCACTGTGGTTATTAATAT-----GAACCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154520046 177 - 158406734 GC----CCCAGAGATGCTTCATGAACTTGACATTTGATG----CCCTGGTCAGAGCTGTAGCTGGAGAAGGGTTTCG-TTTTATTTTTGGTACTACATTGTGTCATTGTTTATTCAC--------CAT----TA-ATTCCTCAAATGCGTTCTTTGTTCCAGAAACAGTGCTGGGCCCTGTGGCTATTAATAT-----GAACCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             352152 176 -   2682657 GC----CCCAGAGATGCTTCATGAACTTGACGTTTGATG----CCCTGGTCAGAGCTGTAGTTGGAGAAGGGTTTCG-TTTTATTTTTGGTACTACATTGTGTCATTATTTATTCAC--------CGT----TA-ATTTCTT-AATGTATTCTTTGTTCCAGAAACAGTGCTGGGCCCTGTGGCTATTAATAT-----GAACTA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       376343 177 -   2086007 GC----CCCAGAGATGCTTCGTGAACTTGACGTTTGATG----CCCTGGTCAGAGCTGTAGCTGGGGAAGGGTTTCG-TTTTATTTTTGGTACTACATTGTGTCATTATTTATTCAC--------CGT----TA-ATTCCTTAAATGTATTCTTTGTTCCAGAAACAGTGCTGGGCCCCGTGGCTATTAATAT-----GAACCA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       439478 177 +   3831555 GC----CCCAGAGATGCTTCATGAACTTGATGTTTGATG----CCCTGGTCAGAGCAGTAGCTGGAGAAGGGTTTCA-TTTTATTTTTGGTACTACATTGTGTCATTATTTATTCAC--------CAT----TA-ATTCCTCAAATGTATTCTTTGTTCCAGAAACAGTGCTGGGCCCTGTGGCTATTAATAT-----GAACCA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116295241 177 + 116334831 GC----CCCAGTGATGTTTGATGAACTTGACTTATGGTG----CCTTGGTCAGAGCCATAGTTGGAAAAGTATTTCT-TTTTATTTTTGGTACTACATTGTAtcattatttattcac--------cat----tc-attcattGAATGTATCCTTTGTTGCAGAAACTCTACTAGTCACTGAAGCTATTAATGT-----GAACCA
i micMur3.chr9              I 94 C 0
s proCoq1.NW_012148396v1     13511632 181 +  16154928 GC----CCCAGTGATGTCTGATGAACTTGACTTATGGTGCCTTCCTTGGTCAGAGCCATAGTTGGAGAAGTGTTTCT-TTTTAATTTTGGTACTACATTGTAtcattatttattcac--------cat----tc-attcattGAATGTATCCTTTGTTGCAGAAACTCTGCTAGTCCCTGAAGCTATTAATGT-----GAACCA
i proCoq1.NW_012148396v1    C 0 I 40
s otoGar3.GL873689             466059 157 +   3845361 GC----CCCAGGGATGTTTG-------------ATGGTT----CCTTGTTCAGAGCTGTAGTTGGAGAAGTGTTTTTCTTTTTATTTTAATACTATGTTGTAGCATTATTTATTCAC--------CAT----TCAATTGACTGAATGTATCTTTTGTTCTGGAAACTCTGTTAGTCTC---------CAATGT-----GAACCA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56136848 183 + 145441459 GT----CCCAGC-CTGCTTAATAAAATTGGCTGACAGTG----TTCTGGCTAGTTACACTGCTAGAAAAGTATTTCC-TTCTGTTTTTGGCTCAGTATTGATTTTTTTTCTTTTCTT--------TTTTTAATC-ATTCATTCATTTTTCTATTTGCTTGAGAAAC--TATTGGTTCCTGATGCTATTAATATTTTTAAAAGTA
i mm10.chr7                 C 0 I 1
s canFam3.chr3               60040537 175 -  91889043 GC----CCCAGTCACACCGAACACACTTGATTTATGGTG----TCCTGGTCAGACTGATAGCTGGAAAAGTGTTTCC-TTTTACATTTAGAGGTACATTGTATCATTATTCATTTAC--------CAT----TC-ATTCATTGAATGTACTTTTTGCTCCAGAAGCTGTCCTGG--TCTTAGGCTATTAATAT-----GAGTGG
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             427959 178 +    563711 GCTGTGCCCAGGGATGCTCC-TGAGCTTGACTGACGGT-----CTGTGGTCAGATTT-TAGTTTCAGTGG---TTCC-TCTCATTTGTGAGAATGTATTGTATCA-TATTCATTCACTGGTCAATCAT----TC-ATTCACCAA-TATAGCC-TTGTTCTACAAACTTTATTGGTCCC--ACACTATTAATAT-----GTGTGA
i dasNov3.JH562051          C 0 C 0

a score=423489.000000
s hg38.chr15_KI270851v1_alt    190425 42 +    263054 TAACTTAACTTAGTATGCCAAGCTAGCCTG-TTCCAACATA---TA
s panTro5.chr15              73803320 45 -  83230942 TAACTTAGCTTTGTATGCCAAGCTAGCCTG-TTCCAACATATATTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74107162 45 -  99763055 TAACTTAGCTTTGTATTCCAAGCTAGCCTG-TTCCAACATATATTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       155626 45 -    281578 TAACTTAACTTTGTATGCCAAGCTAGCCTG-TTCCAACATATATTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71014550 45 + 121039945 TAACTTAACTTCGTATGCCAAGCTAGCCTG-TTCCAACATATATTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164324424 45 - 169600520 TCACTTAATTTTGTATGCCAAGCTAGCCTG-TTCCAACATATATTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165645388 45 - 171882078 TCACTTAATTTTGTATGCCAAGCTAGCCTG-TTCCAACATATATTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       499793 45 +   2379783 TCACTTAATTTTGTATGCCAAGCTAGCCTG-TTCCAACATATATTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       456930 45 +   4116138 TCACTTAATTTTGTATGCCAAGCTAGCCTG-TTCCAACATGGATTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53889225 45 +  58131712 TCAGTTAATTTTGTATGCCAAGCTAGCCTG-TTCCAACATATATTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       509685 45 -   3636681 TCACTTAATTTTGTATGCCAAGCTAGCCTG-TTCCAACATGCATTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       488729 45 -   4457520 TAACTTAATTTTGTATACCAAGCTAGCCTG-TTCCAACATATATTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154520223 40 - 158406734 -----TAACTTTGTATGTCAAGCTAGCCTT-TCCCAACATATATCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             352328 40 -   2682657 -----CAACTTTGTATGTCAAGCTAGCCTT-TCCCAACATATATCA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       376520 40 -   2086007 -----TAACTTTGTATGTCAAGCTAGCCTT-TCCCAACATATATCA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       439655 40 +   3831555 -----TAACTTTGTATGTCAAGCTAGCCCG-TCCTAACATATATCA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116295418 37 + 116334831 -----TAACTTTGTATGCCAAGTTAGCTTG-ATTGAAAGTATA---
i micMur3.chr9              C 0 I 3
s otoGar3.GL873689             466216 37 +   3845361 -----TAACTTTGTATGGCAAGTCAGCTTG-ATTGAAAGTGTG---
i otoGar3.GL873689          C 0 I 3
s mm10.chr7                  56137032 24 + 145441459 -----------TATCTGTTA-------CTT-AATCAATGTAAA---
i mm10.chr7                 I 1 C 0
s canFam3.chr3               60040712 32 -  91889043 TAATTTAACTTTGT-------------CTA-TTCCAAACTAAGTAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             428137 44 +    563711 AAGCTGAACGTCATATATTA--TCAGTCTGTTTCCAAAGCACATTA
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13511813 40 +  16154928 I

a score=9856964.000000
s hg38.chr15_KI270851v1_alt    190467 580 +    263054 GTATAGAGATTATAAATTCACT------TATATTTATAGCATAG-------TT-TTAAAAACATGT-----ATTACTAAATTTAACGTATTTTAACCAATTTAAACCCATAAGCA-----TTATTTATATTT-TACTTGAATAAC--TTTTAGAGCACAGTTTATTATTAA-----ATAGGGTAGACTAATGATGAAAATTGTTTTCCTTTGTTAGGACAAATGGCAGCCGCTGTTGAGTACTGTTACAGGTGTTCACAAATACAAGTGGTTGAAGCAGAATGTGCAGGGTCTTTATCCGCAGTCTCCACTCCTCAGTACAATTGCTGAATTTGCCCTTAAAGAAGAGCCAGTGGATGTGGAAAA---GAGAAAGTGCCTACTAAA--AGGTAACATTTGATGAGAA-ATGCTTCTCTGCATTGGGTAATATACATAACACTTAACTGTATGCATTGATATTTTGCAGTTGGAGAGAGCAGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAATTGTATCTGGTGAGCAAGAATTTCTTACTTCCATCTGTGCCGTATGCGATGTTTTGTGGATGGCAAAGACTTATTCCTGAGGGAATCGATATAGGGTAAAAC
s panTro5.chr15              73803365 575 -  83230942 GTATAGAGATTATAAAATCACTTATAAGTATATTTATAGCATAG-------TT-TTAAAACCATGT-----ATTACTAAA----------TTTAACCAATTTAAACCTATGAGCA-----TTATTTATATTT-TACTTGAATAAC--TTTTAGAGCACAGTTTATTATTAA-----ATAGGGTAGACTAATGATGAAAATTGTTTTCCTTTGTTAGGACAAATGGCAGCCGCTGTTGAGTACTGTTACAGGTGTTCACAAATATAAGTGGTTGAAGCAGAATGTGCAGGGTCTTTATCCGCAGTCTCCACTCCTCAGTACAATTGCTGAATTTGCCCTTAAAGAAGAGCCAGTGGATGTGGAAAAAATGAGAAAGTGCCTACTAAAACAGGTAACATTTGATGAGAA-ATGCTTCTCTGCATTGGGTAATATACATAACACTTAACTGTATGCATTGATATTTTGCAGTTGGAGAGAGCAGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAA------CTGGCGAGCAAGAATTTCTTACTTCCATCTGTGCAGTATGCGATGTTTTGTGGATGGCAAAGACTTATTCCTGAGGGAATCGATATAGGGTAAAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74107207 575 -  99763055 GTATAGAGATTATAAAATCACTTATAAGTATATTTATAGCATAG-------TT-TTAAAACCATGT-----ATTACTAAA----------TTTAACCAATTTAAACCTATGAGCA-----TTATTTATATTT-TACTTGAATAAC--TTTTAGAGCACAGTTTATTATTAA-----ATAGGGTAGACTAATGATGAAAATTGTTTTCCTTTGTTAGGACAAATGGCAGCCGCTGTTGAGTACTGTTACAGGTGTTCACAAATACAAGTGGTTGAAGCAGAATGTGCAGGGTCTTTATCCGCAGTCTCCACTCCTCAGTACAATTGCTGAATTTGCCCTTAAAGAAGAGCCAGTGGATGTGGAAAAAATGAGAAAGTGCCTACTAAAACAGGTAACATTTGATGAGAA-ATGCTTCTCTGCATTGGGTAATATACATAACACTTAACTGTATGCATTGATATTTTGCAGTTGGAGAGAGCAGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAA------CTGGCGAGCAAGAATTTCTTACTTCCATCTGTGCAGTATGCGATGTTTTGTGGATGGCAAAGACTTATTCCTGAGGGAATCGATATAGGGTAAAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       155671 575 -    281578 GTATAGAGATTATAAAATCACTTATAAGTATATTTATGGCATAG-------TT-TTAAAACCATGT-----ATTACTAAA----------TTTAACCAATTTAAACCTATGAGCA-----TTATTTATATTT-TACTTGAATAAC--TTTTAGAGCACAGTTTAAAATTAA-----ATAGGGTAGACTAATGATGAAAATTGTTTTCCTTTGTTAGGACAAATGGCAGCCGCTGTTGAGTACCGTTACAGGTGTTCACAAATACAAGTGGTTGAAGCAGAATGTGCAGGGTCTTTATCCGCAGTCTCCACTCCTCAGTACAATTGCTGAATTTGCCCTTAAAGAAGAGCCAGTGGATGTGGAAAAAATGAGAAAGTGCCTACTAAAACAGGTAACATTTGATGAGAA-ATGCTTCTCTGCATTGGGTAATATACATAACACTTAACTGTATGCATTGATATTTTGCAGTTGGAGAGAGCAGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAA------CTGGCGAGCAAGAATTTCTTACTTCCATCTGTGCAGTATGCGATGTTTTGTGGATGGCAAAGACTTATTCCTGAGGGAATCGATATAGGGTAAAAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71014595 583 + 121039945 GTATAGAGATTATAAATTCACT------TACATTTATAGCATAG-------TT-TTAAAACCATGTATT-AATTACTAAATTTAACATATTTTAACCAATTTAAACCTATGAGCA-----TTATTTATGTTT-TACTTGAATAAC--TTTTAGAGCACAGTTTAATATTAA-----ATAGGGTAGACTAATGATGAAAATTGTTTTCCTTTGTTAGGACAAATGGCAGCCGCTGTTGAGTACTGTTACAGGTGTTCACAAATACAAGTGGTTGAAGCAGAATGTGCAGGGTCTTTATCCGCAGTCTCCACTCCTCAGTACAATTGCTGAATTTGCCCTTAAAGAAGAGCCAGTGGATGTGGAAAAAATGAGAAAGTGCCTACTAAAACAGGTACAATTTGATGAGAA-ATGCTTCTCTGCATTGGGTAATATACATAACACTTAACTGTATGCATTGATATTTTGCAGTTGGAGAGAGCAGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAA------CTGGCGAGCAAGAATTTCTTACTTCCATCTGTGCAGTACGCGATGTTTTGTGGATGGCAAAGACTTATTCCTGAGGGAATCGATACAGGGTAAAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164324469 593 - 169600520 GTATAGAGATTATAAATTCACTTGTAAGTATATTTATAGCATAG-------TT-TTAAAACCATGTATT-ACTTACTAAATTTAACATATTTTAACCAGTGTAAACCTGTGAACA-TTGTTTATTTATATTT-TACTTGAATAAC--TTTTAGAGCACAGTTTAATATTAA-----ATAGGATAGACTAATGATGAAAATTGTTTTCCTTTGTTAGGACAAATGGCAGCCGCTGTTGAGTACTGTTACAGGTGTTCACAAATACAAGTGGTTGAAGCAGAATGTTCAGGGTCTTTATCCGCAGTCTCCACTCCTCAGTACAATTGCTGAATTTGCCCTTAAAGAAGAGCCAGTGGATGTGGAAAAAATGAGAAAGTGCCTACTAAAACAGGTAAAGATTGAAGAGAA-ATGCTTCTGTGCATTGGGGAATGTATATAACACTTAACTGTATGCATTGATGTTTTGCAGTTGGAGAGAGCAGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAA------CTGGCAAGCAAGAATTTCTTACTTCCATCTGTGCAGTACGCGATGTTTTGTGGATGGCAAAGACTTATTCCTGAGGGAATCGATATAGGGTAAAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165645433 593 - 171882078 GTATAGAGATTATAAATTCACTTGTAAGTATATTTATAGCATAG-------TT-TTAAAACCATGTATT-ACTTACTAAATTTAACATATTTTAACCAATGTAAACCTGTGAACA-TTGTTTATTTATATTT-TACTTGAATAAC--TTTTAGAGCACAGTTTAATATTAA-----ATAGGATAGACTAATGATGAAAATTGTTTTCCTTTGTTAGGACAAATGGCAGCCGCTGTTGAGTACTGTTACAGGTGTTCACAAATACAAGTGGTTGAAGCAGAATGTTCAGGGTCTTTATCCGCAGTCTCCACTCCTCAGTACAATTGCTGAATTTGCCCTTAAAGAAGAGCCAGTGGATGTGGAAAAAATGAGAAAGTGCCTACTAAAACAGGTAAAGATTGAAGAGAA-ATGCTTCTGTGCATTGGGTAATGTATATAACACTTAACTGTATGCATTGATGTTTTGCAGTTGGAGAGAGCAGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAA------CTGGCAAGCAAGAATTTCTTACTTCCATCTGTGCAGTACGCGATGTTTTGTGGATGGCAAAGACTTATTCCTGAGGGAATCGATATAGGGTAAAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       499838 593 +   2379783 GTATAGAGATTATAAATTCACTTGTAAGTATATTTATAGCATAG-------TT-TTAAAACCATGTATT-ACTTACTAAATTTAACATATTTTAACCAATGTAAACCTGTGAACA-TTGTTTATTTATATTT-TACTTGAATAAC--TTTTAGAGCACAGTTTAATATTAA-----ATAGGATAGACTAATGATGAAAATTGTTTTCCTTTGTTAGGACAAATGGCAGCCGCTGTTGAGTACTGTTACAGGTGTTCACAAATACAAGTGGTTGAAGCAGAATGTTCAGGGTCTTTATCCGCAGTCTCCACTCCTCAGTACAATTGCTGAATTTGCCCTTAAAGAAGAGCCAGTGGATGTGGAAAAAATGAGAAAGTGCCTACTAAAACAGGTAAAAATTGAAGAGAA-ATGCTTCTGTGCATTGGGTAATGTATATAACACTTAACTGTATGCATTGATGTTTTGCAGTTGGAGAGAGCAGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAA------CTGGCAAGCAAGAATTTCTTACTTCCATCTGTGCAGTACGCGATGTTTTGTGGATGGCAAAGACTTATTCCTGAGGGAATCGATATAGGGTAAAAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       456975 593 +   4116138 GTATAGAGATGATAAATTCACTTATAAGTATATTTATAGCATAG-------TT-TTAAAACCATGTATT-ACTTACTAAATTTAACATATTTTAACCAATTTAAACCTGTGAGCA-TTGTTTATTCATATTT-TACTTGAATAAC--TTTTAGAGCACAGTTTAATATTAA-----ATAGGATAGACTAATGATGAAAATTGTTTTCCTCTGTTAGGACAAATGGCAGCCGCTGTTGAGTACTGTTACAGGTGTTCACAAATACAAGTGGTTGAAGCAGAATGTTCAGGGTCTTTATCCGCAGTCTCCACTCCTCAGTACAATTGCTGAATTTGCCCTTAAAGAAGAGCCAGTGGATGTGGAAAAAATGAGAAAGTGCCTACTAAAACAGGTAAAATTTGAAGAGAA-ATGCTTCTGTGCATTGGGTAATGTATATAACACTTAACTGTATGCATTAATACTTTGCAGTTGGAGAGAGCAGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAA------CTGGCAAGCAAGAATTTCTTACTTCCATCTGTGCAGTACGCGATGTTTTGTGGATGGCAAAGACTTATTCCTGAGGGAATCGATATAGGGTAAAAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53889270 593 +  58131712 GTATAGAGATTATAAATTCACTTATAAGTATATTTATAGCATAG-------TT-TTAAAACCATGTATT-ACTTACTAAATTTAACATATTTTAACCAATTTAAACCTGTGAGCA-TTGTTTATTTATATTT-TACTTGAATAAC--TTTTAGAGCACAGTTTAATATTAA-----ATAGGATAGACTAATGATGAAAATTGTTTTCCTTTGTTAGGACAAATGGCAGCCGCTGTTGAGTACTGTTACAGGTGTTCACAAATACAAGTGGTTGAAGCAGAATGTTCAGGGTCTTTATCCGCAGTCTCCACTCCTCAGTACAATTGCTGAATTTGCCCTTAAAGAAGAGCCAGTGGATGTGGAAAAAATGAGAAAGTGCCTACTAAAACAGGTAAAATTTGAAGAGAA-ATGCTTCTGTGCATTGGGTAATGTATATAACACTTAACTGTATGCATTGATATTTTGCAGTTGGAGAGAGCAGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAA------CTGGCAAGCAAGAATTTCTTACTTCCATCTGTGCAGTACGCGATGTTTTGTGGATGGCAAAGACTTATTCCTGAGGGAATCGATATAGGGTAAAAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       509730 593 -   3636681 GTATAGAGATTATAAATTCACTTATAAGTATATTTATAGCATAG-------TT-TTAAAACCGTGTGTT-ACTTACTAAATTTAACATATTTTAACCAATTTAAACCTGTGAGCA-TTGTTTATTTATATTT-GACTTGAATAAC--TTTTAGAGCACAGTTTAATATTAA-----ATAGGATAGACTAATGATGAAAATTGTTTTCCTCTGTTAGGACAAATGGCAGCCGCTGTTGAGTACTGTTACAGGTGTTCACAAATACAAGTGGTTGAAGCAGAATGTTCAGGGTCTTTATCCGCAGTCTCCACTCCTCAGTACAATTGCTGAATTTGCCCTTAAAGAAGAGCCAGTGGATGTGGAAAAAATGAGAAAGTGCCTACTAAAACAGGTAAAATTTGAAGAGAA-ATGCTTCTGTGCATTGGGTAATGTATATAACATTTAACTGTATGCATTAATATTTTGCAGTTGGAGAGAGCAGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAA------CTGGCAAGCAAGAATTTCTTACTTCCATCTGTGCAGTACGCGATGTTTTGTGGATGGCAAAGACTTATTCCTGAGGGAATCGATATAGGGTAAAAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       488774 593 -   4457520 GTATAGAGATTATAAATTCAATTGTAAGTATATTTATAGCATAG-------TT-TTAAAACCATGTATT-ACTTACTAAATTTAACATGTTTTAACCAATTTAAACCTGTGAGCA-TTATTTATTTATATTT-TACTTGAATAAC--TTTTAGAGCATAGTTTAATATTAA-----ATAGGATAGACTAATGATGAAAATTGTTTTCCTTTGTTAGGACAAATGGCAGCCACTGTTGAGTACTGTTACAGGTGTTCACAAATACAAGTGGTTGAAGCAGAATGTTCAGGGTCTTTATCCGCAGTCTCCACTCCTCAGTACAATTGCTGAATTCGCCCTTAAAGAAGAGCCAGTGGATGTGGAAAAAATGAGAAAGTGCCTACTAAAACAGGTAAAATTTGAAGAGAA-ATGCTTCTGTGCATTGGGTAATGTATATAACATGTAACTCTATGCATTGATATTTTGCAGTTGGAGAGAGCAGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAA------CTGGCAAGCAAGAATTTCTTACTTCCATCTGTGCAGTACGCGATGTTTTGTGGATGGCAAAGACTTATTCCTGAGGGAATCGATATAGGGTAAAAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154520263 588 - 158406734 GTATAGAGATTCTAAATTCACTTATAAGAATACTTAGAGCGTCG-------TT-TTTAAACCATGTATT-AGTTATTAAATTTGACGTATTTTAACCAATTTAAACCTATGAGCA-TTGTTTATTTATATTT-TACTCG----AC--TTTTAGAGCTCTGTTTAATATTAA-----GTAGGGTAGACTGATGATGACAGTTGTTTTCTTTTG-TAGGACAAATGGCAGCCGCTACTGAGTACAGTTTCAGGCGTTCACAAATACAAGTGGTTGAAGCAGAATGTTCAGGGTCTTTATCCGCAGTCTGCACTCCTCAGTACAATTGCTGAATTTGCTCTTAAAGAAGAGCCAGTGGATGTGGAAAAAATGAGAAAGTGTCTACTAAAACAGGTAAAATTTGATGAGAA-ATGTTTCTCTGCACTGGGCGATATACGTAACACTTAACTGTATGCATTGCTATTTTGCAGTTGGAGAGAGCAGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAA------TTGGCAAGCAAGAATTTCTTACTTCCATCTGTGCAGTACGCGATGTTTTGTGGATGGCAAAGGCTCATTCCTGAGGGAATTGATATAGGGTAAAAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             352368 593 -   2682657 GTATAGAGATTCTAAATTCACTTGTAAGAATACTTAGAGTGTCG-------TT-TTTAAACCATGTATT-AGTCATTACATTTAACATATTTTAACCAATTTAAACCTATGAGCATTTGTTTATTTGTATTT-TACTTGAATTAC--TTTTAGTGCACTGTTTAATATAAA-----GTAGGGTAGACCAGTGATGAAAATTGTTTTCTTTTG-TAGGACAAATGGCAGCCGCTACTGAGTACAGTTACAGGTGTTCACAAATACAAGTGGTTGAAGCAGAGTGTTCAGGGTCTTTATCCGCAGTCTGCACTCCTCAGTACAATTGCTGAATTTGCTCTTAAAGAAGAGCCAGTGGATGTGGAAAAAATGAGAAAGTGTCTACTAAAACAGGTAAAATTTGATGAGAA-ATGCTTCTCTGCACTGGGTAATATATGTAACACTTAACTGTATGCATTGATATTTTGCAGTTGGAGAGAGCTGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAA------TTGGCAAGCAAGAATTTCTTACTTCCATCTGTGCAGTACGCGATGTTTTGTGGATGGCAAAGGCTTATTCCTGAGGGAATTGATATAGGGTAAAAC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       376560 592 -   2086007 GTGTAGAGATTCTAAATTCACTTAAAAGAATACTTAGAGCGTCA-------TT-TTTAAACCATGTATT-AGTTATTAAATTTAACATATTTTAACCAATTTAAACCCATGAGCG-TTGTTTATTTATATTT-TACTTGAATGAG--TTTTGGATCACTGTTTAGTATTAG-----GTAGGGTAGACCAATGGTGAAAATTGTTTTATTTTG-TAGGACAAATGGCAGCCACTACTGAGTACAGTTACGGGCGTTCACAAGTACAAGTGGTTGAAGCAGAACGTTCAGGGTCTTTATCCGCAGTCTGCACTCCTCAGTACCATTGCTGAATTTGCTCTTAAGGAAGAGCCAGTGGATGTGGAAAAAATGAGAAAGTGTCTACTAAAACAGGTAACATTTGATGAGAA-CTGCTTCTCTGCACTGGGTAATATATGTAACACTTAACTGTATGCATTGATATTTTGCAGTTGGAGAGAGCTGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAA------TTGGCAAGCAGGAATTTCTTACTTCCATCTGTTCAGTACGCGGTGTTTTGTGGATGGCAAAGGCTTATTCCTGAGGGAGTTGATATAGGGTAAAAC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       439695 591 +   3831555 GTATAGAGATTCTAAATTCACTTATAAGAATACTTAGAGCATCG-------TT-TTTAAACCATGTGTT-AGTTATTAAATTTAACATATTTTAGCCAATTTAAACCTATGAGCA-TTGTTTATTTATATTT-TACTTGAATTAC--CTTTAGAGCCCTGTTTAATGTAAA-----GTAGGGTAGACTAATGATGAAAATTGCTTTCTTTTG-TAGGACAAATGGCAGCCGCTACTGAGTACAGTTACAGGCGTTCGCAGATACAAGTGGTTGAAGCAGAATGTTCAGGGTCTTTATCCGCAGTCTGCACTCCTCAGTACAATTGCTGAATTTGCTCTTAAAGAAGAGCCAGTGGATGTGGAAAAAATGAGAAAGTGTCTACTAAAACAGGTAAAATTTGATGAGAA-ATGCTTCTCTGCACTGGGTAATA-ACGTAACACTTAACTGTATGCATTGATATTTTGCAGTTGGAGAGAGCAGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAA------TTGGCAAGCAAGAATTTCTTACTTCCGTCTGTGCAGTACGCGATGTTTTGTGGATGGCAAAGGCTTATTCCTGAGGGAATTGATATAGGGTAAAAC
i aotNan1.NW_018503298v1    C 0 I 184
s micMur3.chr9              116295458 586 + 116334831 GCATAGAGATTATGAATTCAGTTATAAGGACAGCTATAGCATAG------TTT-TTTAAACCATATATT-AGTTACTAAGTTTAACATACTTTA-CCACTTTAAACCTAGTGGCA-----TTATTTATATTTATATTTGAATAACCGTTTTAGAGTGCAGGTTAATATTAA------TAGGGTAGGCTAATTTTGAAAATTATTTTCCTTTGTTAGGATAAATGGCAGCCACTGTTGAGTACAGTTACAGGTGTTCACAAATACAAGTGGTTGAAGCAGAATGTTCAGGGCCTTTATCCACAGTCTGCACTCCTCAGTACCATCGCTGAATTTGCCCTTAAAGAAGAGCCAGTGGATGTGGAAAAAATGAGAAAATGCCTACTAAAACAGGTAAAATTTGATGAGAACATGTTTCTTTTCCTTGGGTAATATGTACAACATTTAACTG------TTAATATTTTGCAGTTGGAAAGAGCAGAAGTTCGCCTGGAAGGGATAGATACGATTTTAAAA------CTGGCAAGCAAAAATTTCTTACTTCCATCTGTGCAGTATGCTATGTTTTGTGGATGGCAAAGACTTATTCCTGAGGGAATTGATATAGGGTAAAAC
i micMur3.chr9              I 3 C 0
s proCoq1.NW_012148396v1     13511853 596 +  16154928 GCATAGAGATTATGAATTCAGTTATAAGCATATCTGTAGCATAG------TTT-TTTAAACCATATATTAAGTTATTAAGTTCAACATATTTTA-CCAATTTAAACC-AGTGGCA-TTATTTATTTATATTTATATTTGAATAACTGTTTTAGAGTGCAGGTTAATATTAA------TAGGGTAGGCTAATTGTGAATATTGTTTTCCTGTGTTAGGATAAATGGCAACCACTGTTGAGTACAGTTACAGGTGTTCACAGATACAAATGGTTGAAGCAGAATGTTCAGGGCCTTTATCCGCAGTCTGCACTCCTCAGTACAATTGCTGAATTTGCCCTTAAAGAAGAGCCAGTGGATGTGGAAAAAATGAGAAAGTGCCTACTAAAACAGGTAAAATTTGATGAGAACGTGCTTCTCTTCATTGGGTAATATATACAACATTTAACTGTGTGCATTAATATTTTGCAGTTGGAAAGAGCAGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAA------CTGGCAAGCAAAAATTTCTTACTTCCGTCTGTGCAGTATGCTATGTTTTGTGGATGGCAAAGACTTATTCCTGAGGGAATTGATATAGGGTAAAAC
i proCoq1.NW_012148396v1    I 40 C 0
s otoGar3.GL873689             466256 589 +   3845361 GTGTGGAG---ATGAATTCAGTTACAGTCATGTCTATAGAGTAG--------T-TTTAAACCATGTATT-AGTTACTGAGTTTGACATATTCTA-CCAGTTTGAACCTAGTCACG-TTATTTATTTACATGTATGTTTGCGTAACTGTTTTAGAGCACAAGTTAATATTAA------TAGTGTAGGCTAATTGTGGAAATTGTTTTCCTTCATCAGGATAAGTGGCAGCCACTGTTGAGTACAGTCACAGGTGTCCACAGATACCGGTGGTTGAAACAGAACGTGCAGGGCCTTTACCCCCAGTCTGCGCTCCTCAGCACAGTCGCTGAGTTTGCCCTTAAAGAAGAGCCAGTGGATGTGGAAAAAATGAGGAAGTGCCTGCTAAAACAGGTAAAATTTGATGAGACCATGTTTCTCTTCGTTGGGT-GTTTGTATAGTATTTAACTGTGTGTGTTGGTATTTTGCAGTTGGAAAGAGCAGAGGTTCGCCTGGAAGGGATAGATACAATTTTAAAA------CTGGCAAGCAAACATTTCTTACTTCCGTCTGTGCAGTATGCAATGTTTTGTGGATGGCAAAGACTTATTCCTCAGGGGATTGATATAGGGT-AAAC
i otoGar3.GL873689          I 3 C 0
s mm10.chr7                  56137056 556 + 145441459 ATATTGACAACACAGAATGCTTTCCAAGC----------------------TT-GTGTTACAATGTTTT-GGGTTCTGATCCTAGCATAC---AAACAA--CAGAACTATTGGTA-TC--TTGTTTATATTC------AAAGAAC--TATTATAGTACACGGTAA------------TAGGTTAAACTAACTGTTTATATTGTTCTTTTTTGTTAGGATAAATGGCAACCATTGTTGAATACAGTTACAGGGGTTCATAAATATAAATGGTTAAAGCAAAATGTACAGGGCCTTTACCCACAGTCTGCACTCCTCAATACAATTGTTGAATTTGCCCTTAAAGAAGAGCCAGTAGATGTGGAAAAAATGCGGAAGTGCCTCCTAAAACAGGTAAGACTTTCTGTGGC-ACGATCCTTTGCATTGAGTCAGATAGAGCAC---TGACTGTAAATATTGTTATTTTGCAGTTGGAAAGAGCAGAGGTTCGTCTGGAAGGGATAGATACAATTCTGAAA------CTGGCAGCCAAAAGTTTTTTACTTCCTTCTGTGCAGTATGCTATGTTTTGTGGATGGCAAAGACTTATTCCTGAAGGAATTGATATAGGGTAAAGC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60040744 590 -  91889043 ATATAGAGATTATAAATTCATTTATAAGCCTATTTATGGCATAG-------TTATTTTTGCCATACATT-ACGTTTTAA-TATAAAGTATTTTA-CTAATTTTAACCTACTTCTA-T---GTATTTGTATTT-TATTTGAGTAAGTGTTTTAGAGTACAAGTTAATATTAA------TAAG-CAAACTAATGGTGAAAATGGTTTTCCTTTGTCAGGATAAATGGCAACCACTGTTGAGTACAGTTACAGGTGTGCACAAATACAAATGGTTGAAGCAGAATGTTCAAGGTCTTTATCCACAGTCTGCACTCCTCAGTACAATTGCTGAGTTTGCCCTTAAAGAGGAGCCAGTAGATGTGGAAAAAATGAGAAAGTGCCTATTAAAACAGGTAAAATTTTCTAAGAACATTCTTTTCTGCATATGATAACACACACAACACTTAACTGTATACATTGATATTTTGCAGTTGGAGAGAGCAGAAGTTCGTCTGGAAGGGATAGATACAATTTTAAAA------CTGGCAACCAAAAATTTCCTACTTCCATCTGTGCAGTATGCTATGTTCTGTGGATGGCAAAGACTTATTCCTGAGGGGATTGACATAGGGTAAAAC
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             428181 595 +    563711 GTATAGAGACTGTAAATTCATTTATAAAGGTATCTATAGCATAAAAATATAAG-TTTATACCATGT--T-AATTATTAAATTTGAAATATTTTA-CTAGTTTAAACCTATTGGTA-----TTGTTTATATTT-TACATGAGTAAC--TCTTAGAACACTATATTATGTTAATGTTAATAGGGTAAAACAAATGC---ATTTGTTTTTCTTT-TTAGGATAAATGGCAGCCATTGTTGAGTACAGTGACAGGTGTTCACAAATACAAATGGCTGAAGCAGAATGTTCAGGGCCTTTATCCACAGTCTGCTCTCCTCAGTACAATTGCTGAATTTGCTCTTAAAGAAGAGCCGGTGGATGTGGAAAAAATGAGAAAATGCTTATTAAAACAGGTAAGATTTCCTGAAAACATGCTTTTATGCATTAGATAATATGTGCAACACTAAACAGTATACTCTGATATTTTGCAGTTGGAGAGAGCAGAGGTTCGCCTGGAAGGAATAGATACAATTTTAAAA------CTGGCAACCAAAAATTTCTTACTTCCATCTGTACAGTATGCTATGTTTTGTGGATGGCAAAGACTTATTCCTGAAGGGATTGATATAGGGTAAAAC
i dasNov3.JH562051          C 0 C 0

a score=28382.000000
s hg38.chr15_KI270851v1_alt    191047 9 +    263054 GTTAGCATA
s panTro5.chr15              73803940 9 -  83230942 GTTAGCATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74107782 9 -  99763055 GTTAGCATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       156246 9 -    281578 GTTAGCATG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71015178 9 + 121039945 GTTAGCATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164325062 9 - 169600520 GTTATCCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165646026 9 - 171882078 GTTATCCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       500431 9 +   2379783 GTTATCCTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       457568 9 +   4116138 GTTATCCTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53889863 9 +  58131712 GTTATCCTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       510323 9 -   3636681 GTTATCCTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       489367 9 -   4457520 GTTATCCTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154520851 9 - 158406734 ATTATAATA
i calJac3.chr6              C 0 I 2
s saiBol1.JH378292             352961 9 -   2682657 ATTGTAATA
i saiBol1.JH378292          C 0 I 2
s cebCap1.NW_016107707v1       377152 9 -   2086007 ATTGTAATA
i cebCap1.NW_016107707v1    C 0 C 0
s micMur3.chr9              116296044 9 + 116334831 TTTATGTTT
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13512449 9 +  16154928 TTTATAACT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             466845 9 +   3845361 TTTATAACA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56137612 8 + 145441459 TTTATAAA-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60041334 9 -  91889043 TTCAGAACA
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             428776 6 +    563711 --TGTAAC-
i dasNov3.JH562051          C 0 C 0
e aotNan1.NW_018503298v1       440286 184 +   3831555 I

a score=4442814.000000
s hg38.chr15_KI270851v1_alt    191056 259 +    263054 TTTTTTTC-TTAATTAA-GGAAGCTGTGGCAACAGAATG-TTTTTCTGTAACAGTTAGAA---GTCTGGCAGTGTCCCGAGTCAAA-TTCTTTATC-TTTATTTGAAAGGGAACCTCTTACTGATTGTTTAAAGGATGTTGATTTGATCCCGCCTTTTAATCGGATGCTGCTGGAAGTCACCTTTGGCAAGCTGTACGCTTGGGCTGTTCAGAACATTCGAAATGTTTTGGTGGATGCCAGTGCCAAATTTAAAGAGCTTGGTGA--------------------------------------------------------GT
s panTro5.chr15              73803949 259 -  83230942 TTTTTTTC-TTAATTGA-GGTAGCTATGGCAACAAAATG-TTGTTCTGTAACAGTTAGAA---GTCTGGCAGTGTCCTGAGTCAAA-TTCTTTATC-TTTATTTGAAAGGGAACCTCTTACTGATTGTTTAAAGGATGTTGATTTGATCCCACCTTTTAATCGGATGCTGCTGGAAGTCACCTTTGGCAAGCTGTACGCTTGGGCTGTACAGAACATTCGAAATGTTTTGATGGATGCCAGTGCCAAATTTAAAGAGCTTGGTGA--------------------------------------------------------GT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74107791 259 -  99763055 TTTTTTTC-TTAATTAA-GGAAGCTATGGCAACAAAATG-TTGTTCTGTAACAGTTAGAA---GTCTGGCAGTGTCCCGAGTCAAA-TTCTTTATC-TTTATTTGAAAGGGAACCTCTTACTGATTGTTTAAAGGATGTTGATTTGATCCCACCTTTTAATCGGATGCTGCTGGAAGTCACCTTTGGCAAGCTGTACGCTTGGGCTGTTCAGAACATTCGAAATGTTTTGATGGATGCCAGTGCCAAATTTAAAGAGCTTGGTGA--------------------------------------------------------GT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       156255 259 -    281578 TTTTTTTC-TTAAATAA-GGTAGCTATGGCAACAAAATG-TTGTTCTGTAACAGTTAGAA---GTCTGGCAGTGTCCCGAGTCAAA-TTCTTTATC-TTTGTTTGAAAGGGAACCTCTTACTGATTGTTTAAAGGATGTTGATTTGATCCCGCCTTTTAATCGGATGCTGCTGGAAGTCACCTTTGGGAAGCTGTATGCTTGGGCTGTACAGAACATTCGAAATGTTTTGATGGATGCCAGTGCCAAATTTAAAGAGCTTGGTGA--------------------------------------------------------GT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71015187 257 + 121039945 TTTTTTTC-TTAATTAA-GGAAGCTGTGGCAACAAAA---TTGTTCTGTAACAGTTAGAA---GTCTGGCAGTGTCCCGAGTCAAA-TTCTTTATC-TTTATTTGAAAGGGAACCTCTTACTGATTGTTTAAAGGATGTTGATTTGATCCCACCTTTTAATCGGATGCTGCTGGAAGTCACCTTTGGCAAGCTATATGCTTGGGCTGTTCAGAACATTCGAAATGTTTTGATGGATGCCAGTGCCAAATTTAAAGAGCTTGGTGA--------------------------------------------------------GT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164325071 259 - 169600520 TTTTTTTC-ATAATTAA-GGAAGCTGTGGCAACAAAATG-TTGTTCTGTAGTAGTTAGAA---GTCTGGCAGTGTCCCGAGTCAAA-TTCTTTATC-TTTATTTGAAAGGGAACCTCTTACTGATTGTTTAAAGGATGTTGATTTGATCCCCCCTTTTAATCGGATGCTGCTGGAAGTCACCTTTGGCAAGCTGTATGCTTGGGCTGTTCAGAACATTCGAAATGTTTTGATGGATGCCAATGCCAAATTTAAAGAGCTTGGTGA--------------------------------------------------------GT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165646035 259 - 171882078 TTTTTTTC-ATAATTAA-GGAAGCTGTGGCAACAAAATG-TTGTTCTGTAGTAGTTAGAA---GTCTGGCAGTGTCCCGAGTCAAA-TTCTTTATC-TTTATTTGAAAGGGAACCTCTTACTGATTGTTTAAAGGATGTTGATTTGATCCCCCCTTTTAATCGGATGCTGCTGGAAGTCACCTTTGGCAAGCTGTATGCTTGGGCTGTTCAGAACATTCGAAATGTTTTGATGGATGCCAATGCCAAATTTAAAGAGCTTGGTGA--------------------------------------------------------GT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       500440 259 +   2379783 TTTTTTTC-ATAATTAA-GGAAGCTGTGGCAACAAAATG-TTGTTCTGTAGTAGTTAGAA---GTCTGGCAGTGTCCCGAGTCAAA-TTCTTTATC-TTTATTTGAAAGGGAACCTCTTACTGATTGTTTAAAGGATGTTGATTTGATCCCCCCTTTTAATCGGATGCTGCTGGAAGTCACCTTTGGCAAGCTGTATGCTTGGGCTGTTCAGAACATTCGAAATGTTTTGATGGATGCCAATGCCAAATTTAAAGAGCTTGGTGA--------------------------------------------------------GT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       457577 259 +   4116138 TTTTTTTC-ATAATTAA-GGAAGCTGTGGCAACAAAATG-TTGTTCTGTAGTAGTTAGAA---GTCTGGCAGTGTCCCGAGTCAAA-TTCTTTATC-TTTATTTGAAAGGGAACCTCTTACTGATTGTTTAAAGGATGTTGATTTGATCCCCCCTTTTAATCGGATGCTGCTGGAAGTCACCTTTGGCAAGCTGTATGCTTGGGCTGTTCAGAACATTCGAAATGTTTTGATGGATGCCAATGCCAAATTTAAAGAGCTTGGTGA--------------------------------------------------------GT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53889872 259 +  58131712 TTTTTTTC-ATAATTAA-GGAAGCTGTGGCAACAAAGTG-TTGTTCTGTAGTAGTTAGAA---GTCTGGCAGTGTCCCGAGTCAAA-TTCTTTATC-TTTATTTGAAAGGGAACCTCTTACTGATTGTTTAAAGGATGTTGATTTGATCCCCCCTTTTAATCGGATGCTGCTGGAAGTTACCTTTGGCAAGCTGTATGCTTGGGCTGTTCAGAACATTCGAAATGTTTTGATGGATGCCAATGCCAAATTTAAAGAGCTTGGTGA--------------------------------------------------------GT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       510332 259 -   3636681 TTTTTTTC-ATAATTAA-GGAAGCTGTGGCAACAAAATG-TTGTTCTGTAGTAGTTAGAA---GTCTGGCAGTGTCCCGAGTCAAA-TTCTTTATC-TTTATTTGAAAGGGAACCTCTTACTGATTGTTTAAAGGATGTTGATTTGATCCCCCCTTTTAATCGGATGCTGCTGGAAGTCACCTTTGGCAAGCTGTATGCTTGGGCTGTTCAGAACATTCGAAATGTTTTGATGGATGCCAATGCCAAATTTAAAGAGCTTGGTGA--------------------------------------------------------GT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       489376 259 -   4457520 TTTTTTTC-ATAATTAA-GGAAGCTGTGGCAACAAAATG-TTGTTCTGTAGTAGTCAGAA---GTCTGGCAGTGTCCCGAGTCAAA-TTCTTTATC-TTTATTTGAAAGGGAACCTCTTACTGATTGTTTAAAGGATGTTGATTTGATCCCCCCTTTTAATCGGATGCTGCTGGAAGTCACCTTTGGCAAGCTGTATGCTTGGGCTGTTCAGAACATTCGAAATGTTTTGATGGATGCCAATGCCAAATTTAAAGAGCTTGGTGA--------------------------------------------------------GT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154520862 310 - 158406734 TTTTTTTC-TTAGTTAA-GGAAGC--TGGGAATAAAATG-TTGTTCTGTAATAGTTAAAA---GGCTGGCAATGTCCTGAGTAAAC-CTCTTTATC-TTTATTTGAAAGGGAACCTCTCACTGATTGTTTAAAGGATGTTGATTTGATCCCACCTTTTAATCGGATGCTGCTGGAAGTCACCTTTGGCAAGCTGTATGCGTGGGCCGTTCAGAACATTCGGAATGTTTTGATGGATGCCAATGCCAAATTTAAAGAGCTTGGTGAGTTT---AAAAAACCTGAGGGTTAAAAGGCGGCATTAAAATTTATGTTGCAATAATGT
i calJac3.chr6              I 2 C 0
s saiBol1.JH378292             352972 317 -   2682657 TTTTTTCC-TTAATTAA-GGAAGCTGTGGGAACAAAATG-CTGTTCTGTCATAGTTAAAATTTGTCTGGCAGTGTCCTGAGTAAAC-GTCTTTATC-TTCATTTGAAAGGGAACCTCTCACTGATTGTTTAAAGGATGTTGATTTGATCCCACCTTTTAATCGGATGTTGCTGGAAGTCACCTTTGGCAAGCTGTATGCGTGGGCTGTTCAGAACATTCGGAATGTTTTGATGGATGCCAATGCCAAATTTAAAGAGCTTGGTGAGTTT-AAAAAAAACCTGAGGGTTAAAAGGCTGTATTAAAATTGATGTTGCAATAATGT
i saiBol1.JH378292          I 2 C 0
s cebCap1.NW_016107707v1       377161 315 -   2086007 TTTTTTTC-TTAATTAA-GGAAGCTCTGGGAACAAAG----TGTTCTGTAATAGTTAAAATTTGTCTGGCAATGTCCTGAGTAAAC-CTCTTTATC-TTCATTTGAAAGGGAACCTCTCACTGATTGTTTAAAGGATGTTGATTTGATCCCACCTTTTAATCGGATGCTGCTGGAAGTCACCTTTGGCAAGCTGTATGCGTGGGCTGTCCAGAACATTCGGAATGTTTTGATGGATGCCAATGCCAAATTTAAAGAGCTTGGTGAGTTTAAAAAAAAACCTGAGGGTTAAAAGCCTGTATTAAAATTGATGTTGCAATAATGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       440470 313 +   3831555 TTTTTTTC-TTAATTAA-GGAAGCTGTGGGAACAAAATG-TTGTTCTGTAGTAGTTAAAA---GTCTAGCAGTGTCCTGAGTAAAC-CTCTTTATC-TTTATTTGAAAGGGAACCTCTCACTGATTGTTTAAAGGATGTTGATTTGATCCCACCTTTTAATCGGATGCTGCTGGAAGTCACCTTTGGCAAGCTGTATGCGTGGGCTGTTCAGAACATTCGGAATGTTTTGATGGATGCCAATGCCAAATTTAAAGAGCTTGGTGAGTTT--AAAAAAACCTGAGGGTTAAAAGCCTGTATTAAAATTGATGTTGCAATAATGT
i aotNan1.NW_018503298v1    I 184 C 0
s micMur3.chr9              116296053 262 + 116334831 TTTTCTTAATTAATTAA-GGAAGCTGTAGCAACAAAACA-TTGTTCTATTAAAGTTAAAA---GTTTGCCATTGTCCCAAGTAAAATTTTTTTATCTTTTGTTTGAAAGGGAACCCCTTACAGATTGTTTACAGGATGTCGATTTGATCCCACCTTTTAATCGAATGCTGCTGGAAGTAACTTTTGGCAAACTGTATGCTTGGGCTGTTCAGAACATTCGAAATGTTTTGATGGATGCAAATGCCAAATTTAAAGAGCTTGGTGA--------------------------------------------------------GT
i micMur3.chr9              C 0 I 99
s proCoq1.NW_012148396v1     13512458 258 +  16154928 TTTTTC---TTAATTAA-GGAAGCTGTAGCAACAAAACA-TTGTTCTATTAAAGTTAAAA---GTCTGCCAGTGTCCCAAGTAAAA-TTTTTTATCTTTTGTTTGAAAGGGAACCCCTTACAGATTGTTTAAAGGATGTCGATTTGATCCCACCTTTTAATCGAATGCTGCTGGAAGTAACTTTTGGCAAGCTGTATGCTTGGGCTGTTCAGAATATTCGAAATGTTTTGATGGATGCAAATGCCAAATTTAAAGAGCTTGGTGA--------------------------------------------------------GT
i proCoq1.NW_012148396v1    C 0 I 54
s otoGar3.GL873689             466854 239 +   3845361 TTTGTTTC-TTAATTAA-GGGACTTATGACAACAAAACA-T-----TATTATAGTTAAAA---GT---------------GTAACA-TTTTTTCTC-ATTGTTTGAAAGGGAACCCCTTACAGATTGTTTAAAGGATGTTGATCTGATTCCACCTTTTAATCGGATGCTGCTGGAAGTAACTTTTGGCAAGCTATATGCATGGGCTATTCAGAATATTCGAAATGTTTTGATGGATGCAAATGCCAAATTTAAAGAGCTTGGTGA--------------------------------------------------------GT
i otoGar3.GL873689          C 0 I 54
s mm10.chr7                  56137620 257 + 145441459 -TTTTTTC-TCAATATG-GGAATCT-TGATAACACACTA-ATGTTCTTTTGAAGTTAAAA---GTCTGGCAGTGTCCCAAGTCAAG-TTGTGTTTC-TTTGTTTGAAAGGGAACCACTTACAGACTGTTTGAGGGATGTGGATTTGATCCCACCATTTAATCGGATGCTGCTGGAAGTGACTTTTGGCAAGCTGTATGCTTGGGCAGTTCAGAATATTCGATCTGTTCTGATGGATGCAAGTGCCAGGTTTAAAGAGCTGGGTGA--------------------------------------------------------GC
i mm10.chr7                 C 0 I 4
s canFam3.chr3               60041344 315 -  91889043 TTTTTTTA-TTAATTAAGGGAAATTGTGGCAACAAAGCATTTTTTCTATTCAAGTTAAAA---ATCTGGCAATATTCTAAGTAATA-TTCTCTATC-TTTCTTTGAAAGGGAACCTCTTACAGATTGCTTAAAGGATGTGGATTTGATCCCACCTTTTAATCGGATGCTACTGGAAGTAACTTTTGGCAAGCTATATGCTTGGGCTGTTCAGAATATTCGAAATGTTTTGATGGATGCAAATGCCAAATTTAAAGAGCTTGGTGA--GTTAAAAAAAAACATCTTCTTAAAAGGCTGTATTAAGAATGCTGTTGAAGTGATGT
i canFam3.chr3              I 1 C 0
s dasNov3.JH562051             428782 258 +    563711 -TTTTTTT-TTATTATG-GGAAATTGTAGCAACCAAACA-TTGTCCCTTTGAAGTTCAAA---GTTAGGCAGTGTTCCAATTATAA-TTCTTTATC-ATTGTTTGAAAGGGAGCCCCTTACAGATTGTTTAAAGGATGTTGATCTGATCCCACCTTTTAACCGGATGCTGCTGGAAGTAACCTTTGGCAAGCTGTATGCTTGGGCTGTTCAGAATATTCGACATGTTTTGATGGATGCAAATGCCAAATTTAAAGAGCTTGGTGA--------------------------------------------------------GT
i dasNov3.JH562051          C 0 I 89

a score=421613.000000
s hg38.chr15_KI270851v1_alt    191315 35 +    263054 CAATAATTGTATCAATG-------TTATTTTATAGTT------------TGCCT
s panTro5.chr15              73804208 35 -  83230942 CAATAATTGTATCAATG-------TTATTTTACAGTT------------TGCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108050 35 -  99763055 CAATAATTGTATCAATG-------TTATTTTATAGTT------------TGCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       156514 35 -    281578 CAATAATTGTATCAATG-------TTATTTTATAGTT------------TGCCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71015444 35 + 121039945 CAACAGTTGCATCAATG-------TTATTTTATAGTG------------TGCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164325330 35 - 169600520 CAACAATTGCATCAATG-------TTATTTTATATTT------------TGGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165646294 35 - 171882078 CAACAATTGCATCAATG-------TTATTTTATATTT------------TGGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       500699 35 +   2379783 CAACAATTGCATCAATG-------TTATTTTATATTT------------TGGCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       457836 35 +   4116138 CAACAATTGCATCAATG-------TTATTTTATATTT------------TGGCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53890131 35 +  58131712 CAACAATTGCATCAATG-------TTATTTTATATTT------------TGGCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       510591 35 -   3636681 CAACAATTGCATCAATG-------TTATTTTATATTT------------TGGCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       489635 35 -   4457520 CAACAATTGCATCAATG-------TTATTTTATATTT------------TGGCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154521172 35 - 158406734 CAGCAATTGCATCAATG-------TTATTTCATGGTT------------TGGCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353289 35 -   2682657 CAACAATTGTATCAATG-------TTATTTTATGGTT------------TGGCT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       377476 35 -   2086007 CAACAATTGTATCAATG-------TTATTTTATGGTT------------TGGCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       440783 35 +   3831555 CAACAATTGCATCAATG-------TTATTTTATGGTT------------TGGCT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13512770 35 +  16154928 CAATGATTGCATCACTG-------CTATTTCATAGCT------------TGGCC
i proCoq1.NW_012148396v1    I 54 C 0
s otoGar3.GL873689             467147 35 +   3845361 CCGTGATTATGTCACCG-------TTATTTCATAGTT------------TGGCC
i otoGar3.GL873689          I 54 C 0
s mm10.chr7                  56137881 53 + 145441459 CAAAAAGTG-ATAATTAGAAGGCTTTATTTTAAAACTGGTGTTAGGTAATGTCT
i mm10.chr7                 I 4 I 18
s canFam3.chr3               60041659 35 -  91889043 CAGTGATCACATTAGCA-------TTATTTTACAGTT------------TGGCT
i canFam3.chr3              C 0 I 1
e micMur3.chr9              116296315 99 + 116334831 I
e dasNov3.JH562051             429040 89 +    563711 I

a score=257739.000000
s hg38.chr15_KI270851v1_alt    191350 18 +    263054 TTAATTATATGTTGTGGA
s panTro5.chr15              73804243 18 -  83230942 TTAATTATATGTTGTGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108085 18 -  99763055 TTAATTATATGTTGTAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       156549 18 -    281578 TTAATTATATGTTGTGGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71015479 18 + 121039945 TTAATTATATGTTGTGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164325365 18 - 169600520 TTAATTATGTGTTGTGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165646329 18 - 171882078 TTAATTATGTGTTGTGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       500734 18 +   2379783 TTAATTATGTGTTGTGGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       457871 18 +   4116138 TTAATTATGTGTAGTGGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53890166 18 +  58131712 TTAATTATGTGTAGTGGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       510626 18 -   3636681 TTAATTATGTGTAGTGGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       489670 18 -   4457520 TTAATTATGTGTTGTGGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154521207 18 - 158406734 TGAGTTATATGCTGTGGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353324 18 -   2682657 TGAATTATATGCTGTGGA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       377511 18 -   2086007 TGAATTATATGCTGTGGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       440818 18 +   3831555 TGTATTATATTCTGCGGA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116296414 18 + 116334831 TTAGTTACATGTTGTGGA
i micMur3.chr9              I 99 C 0
s proCoq1.NW_012148396v1     13512805 18 +  16154928 TTAGTTATATGTTGTGGA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             467182 18 +   3845361 TTAGTTATATGCTGTGGA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56137952 18 + 145441459 TATACTATACGTTGTGTA
i mm10.chr7                 I 18 C 0
s canFam3.chr3               60041695 18 -  91889043 TTAATTATAAGTTGTAGA
i canFam3.chr3              I 1 C 0
e dasNov3.JH562051             429040 89 +    563711 I

a score=552899.000000
s hg38.chr15_KI270851v1_alt    191368 36 +    263054 AACTTGC--AAATGCCAATTTTTGCT-TTTGAGAAGACT
s panTro5.chr15              73804261 36 -  83230942 AACTTGC--AAATGCCAATTTTTGCT-TTTGAGAAGATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108103 36 -  99763055 AACTTGC--AAATGCCAATTTTTGCT-TTTGAGAAGATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       156567 35 -    281578 AACTTGC--AAATGCCAATTTTT-CT-TTTGAGAAGATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71015497 36 + 121039945 AACTTGC--AAATGCCAATTTTTGCT-TTTGAGAAGACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164325383 36 - 169600520 AACTTGC--AAATGCCAATATTTGCT-TTTGAGAAGACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165646347 36 - 171882078 AACTTGC--AAATGCCAATTTTTGCT-TTTGAGAAGACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       500752 36 +   2379783 AACTTGC--AAATGCCAATTTTTGCT-TTTGAGAAGACT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       457889 36 +   4116138 AACTTGC--AAATGCCAATTTTTGCT-TTTGAGAAGACT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53890184 36 +  58131712 AACTTGC--AAATGCCAATTTTCGCT-TTTGAGAAGACT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       510644 36 -   3636681 AACTTGC--AAATGCCAATTTTTGCT-TTTGAGAAGACT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       489688 36 -   4457520 AACTTGC--AAATGCCAATTTTTGCT-TTTGAGAAGACT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154521225 35 - 158406734 AACTT-C--AAATGCTAATTTTTGCT-TTTGAGAAGACT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353342 36 -   2682657 AACTTGG--AAATGCTAATTTTTGCT-TTTGAGAAGACT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       377529 36 -   2086007 AACTTGC--AAATGCTAATTTTTGCT-TTTGAGAAGACT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       440836 36 +   3831555 AACTTGC--AAATGCTAATTTTTGCT-TTTGAGAAGAAT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116296432 36 + 116334831 AACTTGC--AAATGTCAGTTTTCGCT-TTTGGGAAGACT
i micMur3.chr9              C 0 I 23
s proCoq1.NW_012148396v1     13512823 35 +  16154928 AACTTGT--AAATGTCAATTTTCGCT-TTTGGGAAGAC-
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             467200 34 +   3845361 AA-TTGC--AAGTGCC-GTTTTCACT-TTGGGAAAGACT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56137970 38 + 145441459 AATTTACAAAAAGGTTACTTTTTGCT-TTAGAAACCCGT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60041713 36 -  91889043 AACTCTC--AAATGCTGATTTTTGCTCTTTGAGAAGAC-
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             429129 36 +    563711 AATTTGT--GAATGCTGATATTTGCT-TTTATGAAGACT
i dasNov3.JH562051          I 89 C 0

a score=98796.000000
s hg38.chr15_KI270851v1_alt    191404 19 +    263054 TTAAT--AAGTTTGTACTTTG
s panTro5.chr15              73804297 21 -  83230942 TTCATTAAAGTTTGTACTTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108139 21 -  99763055 TTAATTAAAGTTTGTACTTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       156602 19 -    281578 TTAAT--AAATTTGTACTTTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71015533 18 + 121039945 TTAGT---TGTTTGTACTTTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164325419 19 - 169600520 TTAAT--AACTTTGTACTTTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165646383 19 - 171882078 TTAAT--AACTTTGTACTTTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       500788 19 +   2379783 TTAAT--AACTTTGTACTTTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       457925 19 +   4116138 TTAAT--AACTTTGTACTTTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53890220 19 +  58131712 TTAAT--AACTTTGTACTTTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       510680 12 -   3636681 TTAAT---------TACTTTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       489724 19 -   4457520 TTAAT--AACTTTGTACTTTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154521260  7 - 158406734 TTAAT--AA------------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353378  9 -   2682657 TTAAT--AACT----------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       377565  9 -   2086007 TTAAT--AACT----------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       440872  9 +   3831555 TTAAT--AACT----------
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13512858 18 +  16154928 -TAAT--AACCTTGTACATTA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             467234 19 +   3845361 TTAAT--AATTTTGTACATTA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56138008 11 + 145441459 TTATC--AGATCA--------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60041749 18 -  91889043 -TAAT--AACTTTGTACATTA
i canFam3.chr3              C 0 I 119
s dasNov3.JH562051             429165 19 +    563711 TTGAT--AATGTTATATATTA
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116296468 23 + 116334831 I

a score=8264.000000
s hg38.chr15_KI270851v1_alt    191423 7 +    263054 ---TACTTGT
s panTro5.chr15              73804318 7 -  83230942 ---TACTTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108160 7 -  99763055 ---TACTTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       156621 7 -    281578 ---TACTTGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71015551 7 + 121039945 ---TACTTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164325438 7 - 169600520 ---TACTTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165646402 7 - 171882078 ---TACTTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       500807 7 +   2379783 ---TACTTGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       457944 7 +   4116138 ---TACTTGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53890239 7 +  58131712 ---TACTTGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       510692 7 -   3636681 ---TACTTGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       489743 7 -   4457520 ---TACTTAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154521267 4 - 158406734 ------GTGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353387 4 -   2682657 ------TTGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       377574 4 -   2086007 ------TTGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       440881 4 +   3831555 ------TTGT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13512876 5 +  16154928 ---GA-TTG-
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             467253 5 +   3845361 ---GC-TTG-
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60041886 7 -  91889043 ---tacttgt
i canFam3.chr3              I 119 I 16
s dasNov3.JH562051             429184 5 +    563711 GAATA-----
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56138019 0 + 145441459 C
e micMur3.chr9              116296468 23 + 116334831 I

a score=2817392.000000
s hg38.chr15_KI270851v1_alt    191430 232 +    263054 ATAATCTATGCTGCTGTC--AGCTTTCTC---------------AGA-TTTTAAACAAAACTTT-AAAATTTAGCAGGAGACACAATGTTGAAGTACTCTAGTATA-----ACATTTTTAC----------------------ATTTTG---------------------------------------------------------------------------------------ACATTTTTATGTGTATC------ACCA--CATATCCTAAA------GTGTCTGTGTCCTATATTGATATTT-ATTTCCTGGATAGTTTGAGCATCTACAGAGAGTTGATTGGATTGGTTTTGTGGAGGAAAAGTGAGACA-TAAC
s panTro5.chr15              73804325 224 -  83230942 ATAATCTATGCTGGTGTC--AGCTTTCTC---------------AGA-TTTTAAACAAAACTTC-AAAATTTAGCAGGAGACACAATGTTGAAGTACTCTAGTATA-----ACGTTTTTAC----------------------ATTTTG-----------------------------------------------------------------------------------------------ATGTGTATC------ACCA--CATATCCTAAA------GTGTCTGTGTCCTATATTGATATTT-ATTTCCTGGATAGTTTGAGCATCTACAGAGAGTTGATTCGATTGGTTTTGTGGAGGAAAAGGGAGACA-TAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108167 224 -  99763055 ATAATCTATGCTGATGTC--AGCTTTCTC---------------AGA-TTTTAAACAAAACTTC-AAAATTTAGCAGGAGACACAATGTTGAAGTACTCTAGTATA-----ACATTTTTAC----------------------ATTTTT-----------------------------------------------------------------------------------------------ATGTGTATC------ACCA--CATATCCTAAA------GTGTCTGTGTCCTATATTGATATTT-ATTTCCTGGATAGTTTGAGCATCTACAGAGAGTTGATTCGATTGGTTTTGTGGAGGAAAAGGGAGACA-TAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       156628 224 -    281578 ATAATCTATGCTGCTGTC--AGCTTTCTC---------------AGA-TTTTAAACAAAACTTC-AAAATTTAGCAGGAGACACAATGTTGAAGTACTCTAGTATA-----ACATTTTGAC----------------------ATTTTT-----------------------------------------------------------------------------------------------ATGTGTATC------ACCA--CATATCCTAAA------GTGTCTGTGTCCTATATTAATATTT-ATTTCCTGGATAATTTGAGCATCTACAGAGAGTTGATTGGATTGGTTTTGTGGAGGAAAAGGGAGACA-TAAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71015558 232 + 121039945 ATAATCTATGCTGCTGTC--AGCTTTCTC---------------AGA-TTTTAAACTAAACTTT-AAAATTTAGCAGGAGACACAATGTTGAAGTACTCTAGTATA-----ACATTTTTAC----------------------ATTTTG---------------------------------------------------------------------------------------ACATTTTTATGTGTATC------ACCA--CATACCCTAAA------GTGTCTGTGTCCTATATTAATATTT-ATTTCCTGGATAGTTTGAGCATCTACAGAGAGTTGATTGGATTGGTTTTGTGGAGGAAAAGGGAGACA-TAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164325445 218 - 169600520 A-------------TTTC--AGCTTTCTC---------------AGA-TTTTAAACAAAACTTT-AAAATTTAGCAGGAGACACAATGTTGAAGTACTCTAGTATA-----ACATTTTTAC----------------------ATTTTG---------------------------------------------------------------------------------------ACATTTTTATGTGTATC------ACCA--CATACCCTAAA------GTGTCTGTGTCCTATATTAATA-TT-ATTTCCTGGATAGTTTGAGCATCTACAGAGAGTTGATTGGATTGGTTTTGTGGATGAAAAGTGAGACA-TAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165646409 218 - 171882078 A-------------TTTC--AGCTTTCTC---------------AGA-TTTTAAACAAAACTTT-AAAATTTAGCAGGAGACACAATGTTGAAGTACTCTAGTATA-----ACATTTTTAC----------------------ATTTTG---------------------------------------------------------------------------------------ACATTTTTATGTGTATC------ACCA--CATACCCTAAA------GTGTCTGTGTCCTATATTAATA-TT-ATTTCCTGGATAGTTTGAGCATCTACAGAGAGTTGATTGGATTGGTTTTGTGGATGAAAAGTGAGACA-TAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       500814 218 +   2379783 A-------------TTTC--AGCTTTCTC---------------AGA-TTTTAAACAAAACTTT-AAAATTTAGCAGGAGACACAATGTTGAAGTACTCTAGTATA-----ACATTTTTAC----------------------ATTTTG---------------------------------------------------------------------------------------ACATTTTTATGTGTATC------ACCA--CATACCCTAAA------GTGTCTGTGTCCTATATTAATA-TT-ATTTCCTGGATAGTTTGAGCATCTACAGAGAGTTGATTGGATTGGTTTTGTGGATGAAAAGCGAGACA-TAAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       457951 218 +   4116138 A-------------TTTC--AGCTTTCTC---------------AGA-TTTTAAACAAAACTTT-AAAATTTAGCAGGAGACACAATGTTGAAGTACTCTAGTATA-----ACATTTTTAC----------------------ATTTTG---------------------------------------------------------------------------------------ACATTTTTATGTGTATC------ACCA--CATACCCTAAA------GTGTCTGTGTCCTATATTAATA-TT-ATTTCCTGGATAGTTTGAGCATCTACAGAGAGTTGATTGGATTGGTTTTGTGGATGAAAAGCGAGACA-TAAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53890246 214 +  58131712 A-------------TTTC--AGCTTTCTC---------------AGATTTTTAAACAAAACTTT-AAAATTTAGCAGGAGACACAATGTTGAAGTACTCTAGTATA-----ACATTTTGAC----------------------GTTTTG---------------------------------------------------------------------------------------ACATTTTTATGTGTATC------ACCA--CATACTCTAAA------GTGTCTGTGTCCTATATTAATA-TT-ATTTCCTGGATAGTTTGAGCATCTACAGAGAGCT-----GATTGGTTTTATGGATGAAAAGTGAGACA-TAAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       510699 218 -   3636681 A-------------TTTC--AGCTTTCTC---------------AGA-TTTTAAACAAAACTTT-AAAATTTAGCAGGAGACACAATGTTGAAGTACTCTAGTATA-----ACATTTTTAC----------------------ATTTTG---------------------------------------------------------------------------------------ACATTTTTATGTGTATC------ACCA--CATACCCTAAA------GTGTCTGTGTCCTATATTAATA-TT-ATTTCCTGGATAGTTTGAGCATCAACAGAGAGTTGATTGGATTGGTTTTGTGGATGAAAAGTGAGACA-TAAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       489750 218 -   4457520 A-------------TTTC--AGCTTTCTC---------------AGA-TTTTAAACAAAACTTT-AAAATTTAGCAGGAGACACAATGTTGAAGTATTCTAGTATA-----ACATTTTTAC----------------------ATTTTG---------------------------------------------------------------------------------------ACATTTTTATGTGTATC------ACCA--CATACCCTAAA------GTGTCTGTGTCCTATATTAATA-TT-ATTTCCTGGATAGTTTGAGCATCTACAGAGAGTTGATTGGATTGGTTTTGTGGATGAAAAGCAGGACA-TAAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154521271 233 - 158406734 ATAATCTGTGCTGCTTTC--AGCTTTCTC---------------AGA-TTTTAAACAAAACTTT-AAAATTTAGCAGGAGACACAGTGTTGAAGTACTCTAGTAAA-----ACATTTTTGC----------------------ATTTTC---------------------------------------------------------------------------------------ACATTTT-ATGTGTATC------GCACGTCCTACCCTAAA------ATGTCTGTGTCCTATATTAATATTT-ATTTCCTGGGTAGTTTGAGCATCTACAGAGAG-TGATTGGATTGGTTTTGTGGAGGAAATGTGAGACATTAAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353391 232 -   2682657 GTAATCTGTGCCGCTTTC--AGCTTTCTC---------------AGA-TTTTAAACAAAACTTT-AAAATTTAGCAGGAGATACAGTGTTGAAGTACTCTAGTAAA-----ACATTTTTAC----------------------ATTTTC---------------------------------------------------------------------------------------ACATTTT-ATGTGTATC------ACACATCTTACCCTAAA------GTGTCTGTGTCCTATATTAATATTT-CTTTCCTGGATAGTTTGAGCATCTGCAGAGAG-TGATTGGATTGGTTTTGTGGAGCAAATGTGAGACA-TACC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       377578 232 -   2086007 ATAATCTGTGCTGCTTTC--GGCTTTCTC---------------AGA-TTTTAAACAAAACTTT-AAAATTTAGCAGGAGACACAGTGTTGAAGTACTCTAGTAAA-----ACATTTTTAC----------------------ATTTTC---------------------------------------------------------------------------------------ACATTTT-GTGTGTATC------ACACGTCTTATCCTAAA------GTGTCTGTGTCCTGTATTACTATTT-ATTTCCTGGATAGTTTGAGCACCTACAGAGAG-TGATTGGACTGGTTTTGTGGAGGAAATGTGAGACA-TAAC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       440885 232 +   3831555 ATAATCTGTGCTGCTTTC--AGCTTTCTC---------------AGA-TTTTGAACAAAACTTT-AAAATTTAGCAGGAGACACAGTGTTGAAGTACTCTAGTAAA-----ACATTTCTAC----------------------ATTTTC---------------------------------------------------------------------------------------ACATTTT-ATGTGTAGC------ACATGTCTTACCCTAAA------GTGTCTGTGTCTTATATTAACCTTT-ATTTCCTGGATAGTTTGAGCATCTACAGAGAG-TGATTGGATTGGTTTTGTGGAGGAAATGTGAGACA-TAAC
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116296491 231 + 116334831 ATAATCTGTGCTGCTCTT--AGTGTTCTA---------------AGA-TTCTAAACACAACTGT-AAAAATT--TAGAAGACACAATCTTGAAGTACTCTAATAAA-----AAGCTTTTAT----------------------ATTTTT---------------------------------------------------------------------------------------ACATTTTTATGTATATCAC----ACCA--TATACCTCAGA------GTGTCTGTGTCCTATATTAGTATTT-ATTT-CTGAATAGTTTGAGCTTCCATAGGGAAGTGCTAGGATTAATTTTGTGGAAGAAAAGTGAAACA-TAAC
i micMur3.chr9              I 23 C 0
s proCoq1.NW_012148396v1     13512881 231 +  16154928 ATAATCTGCGCTGCTCTT--AGTGTTCTA---------------TGA-TTCTAAACAAAACTGT-AAAAATT--CAGAAGACACAATCTTGAAGTACTCCAATAAA-----GAGCTTTTAT----------------------ATTTTT---------------------------------------------------------------------------------------ACATTTTTATGTGTATCAC----ACCG--TATACTTCAGA------GTGTCTGTGTCCTGTGTTAATATTT-ATTT-CTGAATAGTTTGAGCATCCACAGGGAAGTGCTAGGATTAGTTTTGTGGAAGAAAAGTGAAACA-TAAC
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             467258 326 +   3845361 ATAATTTACACTACTTTTACAGTGTT----------------------------------CTGT-GGAAATT--TAGAAG--ACAATCTTGAAGTACTTTATTAAA-----AAGCTTTTATAGCTTCACAttttttttgtgcgatttttagctagggccaggtttgaacccaccacctctggtatatggggccagcgccctactcccttgagccacaggtgccacccTATAGCTTCACATTTTTATGTGTATAACCTATACCA--TGTACCTCAGA------GTGTCTGTGTCCTATATTAATATTT-ATTT-CTGGATATTTTGAGCATTCACAGACAAGTGCTAGGATTAGTATTATGGAAGAAAAGTGAAACG-TAAC
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56138019 235 + 145441459 ATAATCTTAGGTGCTTTT--AGCCTTTTTTTTTTTTTCTTTTAAAGA-TTGAGAATAGGACTTTGAAAATTTGTCAAAATGAATAATCTCAAAATATTCTG--AAA-----AC-----TAC----------------------ATTGTT-----------------------------------------------------------------------------------------------AGGAGTATTAT----ACCA--TATTCTTTAGG------GTGTCAGTGTTGTAAACTAATACTT-TTCTTCTAGATAATTTGAGTTTCTATAGAGAAATAATAAGACTTGTTGTTTGGTAGTATAGTGAAAGA-TGGC
i mm10.chr7                 C 0 I 437
s canFam3.chr3               60041909 198 -  91889043 -ATAATTAAGGTGCTTTA--AGCTTTCTG---------------AAA-TTTTAAACAAAACTTTCAAAATTCAACAGAGGACATA----------------------------------------------------------ATCTTC-----------------------------------------------------------------------------------------------TTGTGTATCACTGATGCCA--TAAGCCCTAAA--------GTTTGTATCCTATATTAATACTTAATTTCTTGGGTAGTTTAAGTACCTGCAGAGAAATGCTAGGATTGGTCTTGTGGAAGAGAAGTGAAATA-TGAC
i canFam3.chr3              I 16 C 0
s dasNov3.JH562051             429189 247 +    563711 ATAATCTAAGCTGCACTT--GAGTTTCTC---------------AGG-TTCTAAACAGAACTTTCAAAATTTGGCCGTAGTAAAGATCTTAAAGTTTTCTAATACAAAATTACATTTTAAC----------------------ATATTT---------------------------------------------------------------------------------------TCATTTG-TTCTATATCACTTATACCA--TACTTCCTAAAATTAAAATGTCTATATCCTATAATGGTACTT-AATCCTAGGATAGTTTGAGCATCTACAAAGAAATTCTAGGATTTATTTTGTGGAAGAAAAGTGAAATG-CG--
i dasNov3.JH562051          C 0 C 0

a score=1017738.000000
s hg38.chr15_KI270851v1_alt    191662 81 +    263054 TTTTATATTTGAAATGGAAGGAATGGAATA----GGGCACC-GGTGTATTCAGA-GAGCAACATACT--AAGTCCTG-TAGACAGATGGA
s panTro5.chr15              73804549 81 -  83230942 TTTTATATTTGAAATGGAAGGAATGGAATA----GGGCACC-AGTGTATTCAGA-GAGCAACATGCT--AAGTCCTG-TAGACAGATGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108391 81 -  99763055 TTTTATATTTGAAATGGAAGGAATGGAATA----GGGCACC-AGAGTATTCAGA-GAGCAACATGCT--AAGTCCTG-TAGACAGATGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       156852 81 -    281578 TTTTATATTTGAAATGGAAGGAATGGAATA----GGGCACC-AGGGTATTCAGA-GAGCAACATGCT--AAGTCCTG-TAGACAGATGGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71015790 81 + 121039945 TTTTATATTTGAAATGGAAGGAATGGAATA----GGGCACC-AGGGTATTCAGA-GAGCAACATGCT--AAGACCTG-TAGACAGATGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164325663 85 - 169600520 TTGCATATTTGAAATGGAAGGAATGGAATAGGGCGGGCACC-AGGGTATTCGGA-GAGCAACATGCT--AAGTCCTG-TAGACAGATGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165646627 85 - 171882078 TTGCATATTTGAAATGGAAGGAATGGAATAGGGCGGGCACC-AGGGTATTCGGA-GAGCAACATGCT--AAGTCCTG-TAGACAGATGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       501032 85 +   2379783 TTGCATATTTGAAATGGAAGGAATGGAATAGGGCGGGCACC-AGGGTATTCGGA-GAGCAACATGCT--AAGTCCTG-TAGACAGATGGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       458169 81 +   4116138 TTTCATATTTGAAATGGAAGGAATGGAATA----GGGCACC-AGGGTATTCGGA-GAGCAACATGCT--AAGTCCTG-TAGACAGATGGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53890460 81 +  58131712 TTTCATATTTGAAATGGAAGGAATGGAATA----GGGCACC-AGGGTATTCGGA-GAGCAACATGCT--AAGTCCTG-TAGACAGATGGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       510917 83 -   3636681 TTTCATATTTGAAATGGAAGGAATGGAATA----GGGCACC-AGGGTATTCGGA-GAGCAACATGCTAAAAGTCCTG-TAGACAGATGGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       489968 81 -   4457520 TTTCATATCTGAAATGGAAGGAATGGAATA----GGGCACC-GGGGTATTTGGA-GAGCAACATGCT--AAGTCCTA-TAGACAGATGGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154521504 81 - 158406734 TTTTATATTTGAAATGGAAGGAATGGAATA----GGGCCCCTGGGATATTCAGA-GAGCAGCATGC---AAGTCCTG-CAGACAGATAGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353623 81 -   2682657 TTTTATATATGAAATGGAAGGAATGGAATA----GGGCCCCCAGGGTATTCAGA-GAGCAGCATGC---AAGTCCAG-CAGACAGATGGA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       377810 81 -   2086007 TTTTATATTTGAGATGGAAGGAATGGAATA----GGGCCCCCGGGATATTCAGA-GAGCAGCATGC---AAGTCCAG-CAGACAGATGGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       441117 81 +   3831555 TTTTATATTTGAAATAGAAGGAATGGAATA----GGGCCCCCGGGATGCTCAGA-GAGCAGCATGC---AAGTCCTG-CAGACAGATGGA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116296722 82 + 116334831 TGTTACATTTGAAACAAAAGGAATGGAATG----GGGCACCAGGGATATTTAGA-GAGCAGTATGCT--AAGTCTTA-CAGACAGATGGA
i micMur3.chr9              C 0 I 111
s proCoq1.NW_012148396v1     13513112 82 +  16154928 TGTTACATTTGAAATGAAAGGAATGGAATA----GGGCACCAGGGATATTTAGA-GAGCAGCATGCT--AAGTCTTA-CAGACAGATGGA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             467584 57 +   3845361 TATTGTATTTAA---------AATTGATAG----GGCCCCCAAGGATAT-----------------T--AAGTCCTA-TAGACAAGTGGA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60042107 73 -  91889043 TGTTGTATTTGAAAT----------GAATA----AGCCACCAAGGCTATTCAGAGGAGCAGTGTGAT--AAGTTTTG-CAGACAACTAAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             429436 75 +    563711 --TTACACTTGAAATGAAAGGAAT----------AGGCGCCAGGGATATTTAGAGGAGCAATGTGAT--GAGTCTTGTTAGACGGGGAG-
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56138254 437 + 145441459 I

a score=582007.000000
s hg38.chr15_KI270851v1_alt    191743 54 +    263054 ACGACCTGTGCATAGAATGCAGGGGGTAGGCCCATCGTGCAGCATGACAGAGCT-------
s panTro5.chr15              73804630 54 -  83230942 ATGACCTGTGCATAGAATGCAGGGGGTAGGCCCATCGTGCAGCATGGCAGAGCT-------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108472 54 -  99763055 ATGACCTGTGCATAGAATGCAGGGGTTAGGCCCATCGTGCAGCATGGCAGAGCT-------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       156933 54 -    281578 ACGACCTGTGCATAGAATGCAGGGGGTAGGCCCATCGTGCAGCATGACAGAGCT-------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71015871 54 + 121039945 ATGACCTGTGCATAGAATGCAGGGGGTAGGCCCATCGTGCAGCATGACAGAGCT-------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164325748 54 - 169600520 ACGACTTGTGCTTGGAGTGCAGGGGATAGGCTCATTGTGCAGCATGACAGAGCT-------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165646712 54 - 171882078 ACGACTTGTGCTTGGAGTGCAGGGGATAGGCTCATTGTGCAGCATGACAGAGCT-------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       501117 54 +   2379783 ACGACTTGTGCTTGGAGTGCAGGGGATAGGCTCATTGTGCAGCATGACAGAGCT-------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       458250 54 +   4116138 ACGACCTGTGCTTGGAGTGCAGGGGATAGGCTCATTGTGCAGCATGACAGAGCT-------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53890541 54 +  58131712 ACGACCTGTGCTTGGAGTGCAGGGGACAGGCTCATTGTGCAGCATGACAGAGCT-------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       511000 54 -   3636681 ATGACCTGTGTTTGGAGTGCAGGGGATAGGCTCATTGTGCAGCATGACAGAGCT-------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       490049 54 -   4457520 ACGACCTGTGCTTGGAGTGCAGGGGATAGGCTCATCGTGCAGCATGACAGAGCT-------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154521585 54 - 158406734 GCGACCTGTACGTGGAGTGCAGGGGGTAGACCCACCGTGCAGCACGACAGAGCT-------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353704 54 -   2682657 GCGACCTGTCTGTGGAGTGCAGGGGGTAGACCCACCGTGCGGCACACCAGAGCT-------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       377891 54 -   2086007 GCGACCTGTATGTGGAGTGCAGGGGTTAGACCCACCGTGCAGCACAGCAGAGCT-------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       441198 54 +   3831555 GCAACCTGTACGTGGAGTGCAGGGGGTAGACCCACCGTGCAGCACGACAGAGCT-------
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13513194 54 +  16154928 GAGATCCGTGCTTGGAGTGCAGGTGGTAGGACCATTGCAAAGCATGACAGAGCT-------
i proCoq1.NW_012148396v1    C 0 I 59
s otoGar3.GL873689             467641 48 +   3845361 GAGAGCTGTG--TGGGG---GGGTTGTAGGACAGTTGCAAAGCATGAC-GAGCT-------
i otoGar3.GL873689          C 0 I 8
s canFam3.chr3               60042180 54 -  91889043 AATGGGTATATGTGGATTGATGGTGGTAGGATTATTGCAAAGCAGTGCATAGCT-------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             429511 59 +    563711 ATAACTGATG--TGGAATGAAGGTGGCCACATCATTGCAAAGCAATCCAGAGTTCCCTGAT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56138254 437 + 145441459 I
e micMur3.chr9              116296804 111 + 116334831 I

a score=184427.000000
s hg38.chr15_KI270851v1_alt    191797 23 +    263054 GCCCACTC--TGTGGAAA-CCACTGA
s panTro5.chr15              73804684 23 -  83230942 GCCCACTC--TGTGGAAA-CCCCTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108526 23 -  99763055 GCCCACTC--TGTGGAAA-CCCCTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       156987 22 -    281578 GCCCACTC--TGTGGAAA-CC-CTGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71015925 23 + 121039945 GCCCACTC--TGTGGAAA-CCACTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164325802 24 - 169600520 GCACACTC--TGTGGAAATCCACTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165646766 24 - 171882078 GCACACTC--TGTGGAAATCCACTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       501171 24 +   2379783 GCACACTC--TGTGGAAATCCACTGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       458304 24 +   4116138 GCACACTC--TGTGGAAATCCACTGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53890595 24 +  58131712 GCACACTC--TGTGGAAATCCACTGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       511054 24 -   3636681 GCACACAC--TGTGGAAATCCACTGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       490103 24 -   4457520 GCCCACTC--TGTGGAAATCCACTGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154521639 23 - 158406734 GCCTACTC--TGTGGAAACCCACC-G
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353758 24 -   2682657 GCCCGCTC--TGTGGAAACCCACCGG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       377945 24 -   2086007 GCCCACTC--CGTGGAAGCCCACCGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       441252 24 +   3831555 GCCCACTC--TGTGGAAACCCACCGT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             467697 23 +   3845361 CTATATTC--CATGGAGA-CCCCTGA
i otoGar3.GL873689          I 8 C 0
s canFam3.chr3               60042234 10 -  91889043 ---AGCTG--CCTGA-----------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             429570 26 +    563711 GTCTACCCAGTATGGAAATCCACTGA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56138254 437 + 145441459 I
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I

a score=55692.000000
s hg38.chr15_KI270851v1_alt    191820 4 +    263054 AAAA
s panTro5.chr15              73804707 4 -  83230942 AAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108549 4 -  99763055 AAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157009 4 -    281578 AAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71015948 4 + 121039945 AAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164325826 4 - 169600520 AAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165646790 4 - 171882078 AAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       501195 4 +   2379783 AAAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       458328 4 +   4116138 AAAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53890619 4 +  58131712 AAAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       511078 4 -   3636681 AAAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       490127 4 -   4457520 AAAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154521662 4 - 158406734 AAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353782 4 -   2682657 AAAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       377969 4 -   2086007 AAAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       441276 4 +   3831555 AAAA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             467720 4 +   3845361 AAAA
i otoGar3.GL873689          C 0 C 0
s dasNov3.JH562051             429596 4 +    563711 AAAA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56138254 437 + 145441459 I
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I
e canFam3.chr3               60042244 0 -  91889043 C

a score=6086.000000
s hg38.chr15_KI270851v1_alt    191824 1 +    263054 T
s panTro5.chr15              73804711 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108553 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157013 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71015952 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164325830 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165646794 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       501199 1 +   2379783 T
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       458332 1 +   4116138 T
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53890623 1 +  58131712 T
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115278v1       490131 1 -   4457520 T
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154521666 1 - 158406734 C
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353786 1 -   2682657 C
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       377973 1 -   2086007 C
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       441280 1 +   3831555 C
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             467724 1 +   3845361 T
i otoGar3.GL873689          C 0 C 0
s dasNov3.JH562051             429600 1 +    563711 T
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56138254 437 + 145441459 I
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I
e canFam3.chr3               60042244 0 -  91889043 C
e manLeu1.NW_012102332v1       511082 0 -   3636681 C

a score=12001.000000
s hg38.chr15_KI270851v1_alt    191825 4 +    263054 AGTC
s panTro5.chr15              73804712 4 -  83230942 AGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108554 4 -  99763055 AGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157014 4 -    281578 AGTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71015953 4 + 121039945 AGTC
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012115278v1       490132 4 -   4457520 AGTC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154521667 4 - 158406734 AGTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353787 4 -   2682657 AGTC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       377974 4 -   2086007 AGTC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       441281 4 +   3831555 AGTC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             467725 2 +   3845361 AG--
i otoGar3.GL873689          C 0 C 0
s dasNov3.JH562051             429601 2 +    563711 AG--
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56138254 437 + 145441459 I
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I
e canFam3.chr3               60042244 0 -  91889043 C
e manLeu1.NW_012102332v1       511082 0 -   3636681 C
e cerAty1.NW_012001462v1       458333 0 +   4116138 C
e macNem1.NW_012011934v1       501200 0 +   2379783 C
e rheMac8.chr7              164325831 0 - 169600520 C
e chlSab2.chr26              53890624 0 +  58131712 C
e macFas5.chr7              165646795 0 - 171882078 C

a score=87237.000000
s hg38.chr15_KI270851v1_alt    191829 22 +    263054 AGATGTTTAGAGTAATCGCCCG
s panTro5.chr15              73804716 22 -  83230942 AGATGTTTAAAGTAATTGCCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108558 22 -  99763055 AGATGTTTAAAGTAATTGCCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157018 22 -    281578 AGATGTTTAAAGTAATTGCCCG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71015957 22 + 121039945 AGATGTTTAAAGTAATCGCCCG
i nomLeu3.chr6              C 0 I 93
s macFas5.chr7              165646795 22 - 171882078 AGATGTTTAAAGTAATCGCCAA
i macFas5.chr7              C 0 C 0
s colAng1.NW_012115278v1       490136 22 -   4457520 AGACGTTTAAAGTAATCGCCAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154521671 22 - 158406734 AGATGTTTAACGTCAACGCCGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353791 22 -   2682657 TGATGTTTAACGTCATCGCCAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       377978 21 -   2086007 AGATGTTTAA-GTCATCGCCAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       441285 22 +   3831555 AGATGTTTAACGTCATCGCCAG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             467727 20 +   3845361 --AAGCACAAAGTAATCTCTAG
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56138254 437 + 145441459 I
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I
e dasNov3.JH562051             429603  0 +    563711 C
e canFam3.chr3               60042244  0 -  91889043 C
e manLeu1.NW_012102332v1       511082  0 -   3636681 C
e cerAty1.NW_012001462v1       458333  0 +   4116138 C
e macNem1.NW_012011934v1       501200  0 +   2379783 C
e rheMac8.chr7              164325831  0 - 169600520 C
e chlSab2.chr26              53890624  0 +  58131712 C

a score=127993.000000
s hg38.chr15_KI270851v1_alt    191851 30 +    263054 TGCCTTCTGCATTACGTTTATGCTTGTATC
s panTro5.chr15              73804738 30 -  83230942 TGCTTTCTGCATTACGTTTATTCTTGTATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108580 30 -  99763055 TGCTTTCTGCATTACGTTTATTCTTGTATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157040 30 -    281578 TGCTTTCTGCATTACGTTTATTCTTGTATC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71016072 30 + 121039945 TGCTTTCTGCATTACGTTTATTTTTGCATC
i nomLeu3.chr6              I 93 C 0
s macFas5.chr7              165646817 30 - 171882078 TGCTTTCTGCATTACGTTTATTCTTGTATC
i macFas5.chr7              C 0 I 7
s colAng1.NW_012115278v1       490158 30 -   4457520 TGCTTTCTGCATTACGTTTATTCTTGTATC
i colAng1.NW_012115278v1    C 0 I 11
s calJac3.chr6              154521693 30 - 158406734 TGCTTTCTGCATTATGTATATTCTTGTATC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353813 30 -   2682657 TGTTTTCTGCATTATGTATATTCTTGTTTC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       377999 30 -   2086007 TGCTTTCTGCATTATGTATATTCTTGTATC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       441307 30 +   3831555 TGCTTTCTGCATTATGTATATTCTTGTATC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             467747 22 +   3845361 TGCTTTCTTTAGCATTTATACT--------
i otoGar3.GL873689          C 0 C 0
s dasNov3.JH562051             429603  6 +    563711 --------------CATTTA----------
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56138254 437 + 145441459 I
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I
e canFam3.chr3               60042244  0 -  91889043 C
e manLeu1.NW_012102332v1       511082  0 -   3636681 C
e cerAty1.NW_012001462v1       458333  0 +   4116138 C
e macNem1.NW_012011934v1       501200  0 +   2379783 C
e rheMac8.chr7              164325831  0 - 169600520 C
e chlSab2.chr26              53890624  0 +  58131712 C

a score=21690.000000
s hg38.chr15_KI270851v1_alt    191881 5 +    263054 CATGC
s panTro5.chr15              73804768 5 -  83230942 CATGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108610 5 -  99763055 CATGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157070 5 -    281578 CATGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71016102 5 + 121039945 CATGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165646854 5 - 171882078 CATGC
i macFas5.chr7              I 7 C 0
s calJac3.chr6              154521723 5 - 158406734 CATGC
i calJac3.chr6              C 0 T 66
s saiBol1.JH378292             353843 5 -   2682657 CATGC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       378029 5 -   2086007 CATGC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       441337 5 +   3831555 CATGC
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56138254 437 + 145441459 I
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I
e dasNov3.JH562051             429609 0 +    563711 C
e canFam3.chr3               60042244 0 -  91889043 C
e otoGar3.GL873689             467769 0 +   3845361 C
e colAng1.NW_012115278v1       490188 11 -   4457520 I
e manLeu1.NW_012102332v1       511082 0 -   3636681 C
e cerAty1.NW_012001462v1       458333 0 +   4116138 C
e macNem1.NW_012011934v1       501200 0 +   2379783 C
e rheMac8.chr7              164325831 0 - 169600520 C
e chlSab2.chr26              53890624 0 +  58131712 C

a score=700.000000
s hg38.chr15_KI270851v1_alt    191886 1 +    263054 G
s panTro5.chr15              73804773 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108615 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157075 1 -    281578 A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71016107 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165646859 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s saiBol1.JH378292             353848 1 -   2682657 G
i saiBol1.JH378292          C 0 T 67
e mm10.chr7                  56138254 437 + 145441459 I
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I
e dasNov3.JH562051             429609 0 +    563711 C
e canFam3.chr3               60042244 0 -  91889043 C
e aotNan1.NW_018503298v1       441342 0 +   3831555 C
e otoGar3.GL873689             467769 0 +   3845361 C
e cebCap1.NW_016107707v1       378034 0 -   2086007 C
e colAng1.NW_012115278v1       490188 11 -   4457520 I
e manLeu1.NW_012102332v1       511082 0 -   3636681 C
e cerAty1.NW_012001462v1       458333 0 +   4116138 C
e macNem1.NW_012011934v1       501200 0 +   2379783 C
e rheMac8.chr7              164325831 0 - 169600520 C
e chlSab2.chr26              53890624 0 +  58131712 C
e calJac3.chr6              154521728 66 - 158406734 T

a score=23163.000000
s hg38.chr15_KI270851v1_alt    191887 21 +    263054 AGAGAAATGTCAGTGGGTGTC
s panTro5.chr15              73804774 21 -  83230942 CAAGAAATGTAGGTGGGTGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108616 21 -  99763055 CAAGAAATGTAGGTGGGTGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157076 21 -    281578 CAAGAAATGTAGGTGGGTGTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71016108 21 + 121039945 CAATAAATGTCAGTGGGTGTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165646860 21 - 171882078 CAAGAAATGTAAGTAGGTGCC
i macFas5.chr7              C 0 C 0
e mm10.chr7                  56138254 437 + 145441459 I
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I
e dasNov3.JH562051             429609  0 +    563711 C
e canFam3.chr3               60042244  0 -  91889043 C
e aotNan1.NW_018503298v1       441342  0 +   3831555 C
e otoGar3.GL873689             467769  0 +   3845361 C
e cebCap1.NW_016107707v1       378034  0 -   2086007 C
e colAng1.NW_012115278v1       490188 11 -   4457520 I
e manLeu1.NW_012102332v1       511082  0 -   3636681 C
e cerAty1.NW_012001462v1       458333  0 +   4116138 C
e macNem1.NW_012011934v1       501200  0 +   2379783 C
e rheMac8.chr7              164325831  0 - 169600520 C
e chlSab2.chr26              53890624  0 +  58131712 C
e saiBol1.JH378292             353849 67 -   2682657 T
e calJac3.chr6              154521728 66 - 158406734 T

a score=6552.000000
s hg38.chr15_KI270851v1_alt    191908 2 +    263054 AA
s panTro5.chr15              73804795 2 -  83230942 AA
i panTro5.chr15             C 0 I 5
s panPan2.chr15              74108637 2 -  99763055 AA
i panPan2.chr15             C 0 I 5
s gorGor5.CYUI01000141v1       157097 2 -    281578 AA
i gorGor5.CYUI01000141v1    C 0 I 5
s nomLeu3.chr6               71016129 2 + 121039945 AA
i nomLeu3.chr6              C 0 T 88
s macFas5.chr7              165646881 2 - 171882078 AA
i macFas5.chr7              C 0 T 88
s calJac3.chr6              154521662 2 - 158406734 AA
i calJac3.chr6              T 66 C 0
s saiBol1.JH378292             353782 2 -   2682657 AA
i saiBol1.JH378292          T 67 C 0
s dasNov3.JH562051             429609 2 +    563711 AA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56138254 437 + 145441459 I
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I
e canFam3.chr3               60042244 0 -  91889043 C
e aotNan1.NW_018503298v1       441342 0 +   3831555 C
e otoGar3.GL873689             467769 0 +   3845361 C
e cebCap1.NW_016107707v1       378034 0 -   2086007 C
e colAng1.NW_012115278v1       490188 11 -   4457520 I
e manLeu1.NW_012102332v1       511082 0 -   3636681 C
e cerAty1.NW_012001462v1       458333 0 +   4116138 C
e macNem1.NW_012011934v1       501200 0 +   2379783 C
e rheMac8.chr7              164325831 0 - 169600520 C
e chlSab2.chr26              53890624 0 +  58131712 C

a score=11091.000000
s hg38.chr15_KI270851v1_alt    191910 7 +    263054 AATAGTC
s panTro5.chr15              73804802 7 -  83230942 ATCAGTC
i panTro5.chr15             I 5 C 0
s panPan2.chr15              74108644 7 -  99763055 ATTAGTC
i panPan2.chr15             I 5 C 0
s gorGor5.CYUI01000141v1       157104 7 -    281578 ATTAGTC
i gorGor5.CYUI01000141v1    I 5 C 0
s nomLeu3.chr6               71016043 7 + 121039945 ATTAGTC
i nomLeu3.chr6              T 88 C 0
s calJac3.chr6              154521664 7 - 158406734 AACAGTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353784 7 -   2682657 AACAGTC
i saiBol1.JH378292          C 0 C 0
s dasNov3.JH562051             429611 7 +    563711 AAAAATC
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56138254 437 + 145441459 I
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I
e canFam3.chr3               60042244 0 -  91889043 C
e aotNan1.NW_018503298v1       441342 0 +   3831555 C
e otoGar3.GL873689             467769 0 +   3845361 C
e cebCap1.NW_016107707v1       378034 0 -   2086007 C
e colAng1.NW_012115278v1       490188 11 -   4457520 I
e manLeu1.NW_012102332v1       511082 0 -   3636681 C
e cerAty1.NW_012001462v1       458333 0 +   4116138 C
e macNem1.NW_012011934v1       501200 0 +   2379783 C
e rheMac8.chr7              164325831 0 - 169600520 C
e chlSab2.chr26              53890624 0 +  58131712 C
e macFas5.chr7              165646883 88 - 171882078 T

a score=22691.000000
s hg38.chr15_KI270851v1_alt    191917 16 +    263054 AGATGATTAGAGTAAT
s panTro5.chr15              73804809 16 -  83230942 AGATGTTTAGAGTAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108651 16 -  99763055 AGATGTTTAGAGTAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157111 16 -    281578 AGATGTTTAGAGTAAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71016050 16 + 121039945 AGACGTTTAGAGTAAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165646795 16 - 171882078 AGATGTTTAAAGTAAT
i macFas5.chr7              T 88 C 0
s calJac3.chr6              154521671 16 - 158406734 AGATGTTTAACGTCAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353791 16 -   2682657 TGATGTTTAACGTCAT
i saiBol1.JH378292          C 0 C 0
s dasNov3.JH562051             429618  5 +    563711 ACAAG-----------
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56138254 437 + 145441459 I
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I
e canFam3.chr3               60042244  0 -  91889043 C
e aotNan1.NW_018503298v1       441342  0 +   3831555 C
e otoGar3.GL873689             467769  0 +   3845361 C
e cebCap1.NW_016107707v1       378034  0 -   2086007 C
e colAng1.NW_012115278v1       490188 11 -   4457520 I
e manLeu1.NW_012102332v1       511082  0 -   3636681 C
e cerAty1.NW_012001462v1       458333  0 +   4116138 C
e macNem1.NW_012011934v1       501200  0 +   2379783 C
e rheMac8.chr7              164325831  0 - 169600520 C
e chlSab2.chr26              53890624  0 +  58131712 C

a score=12135.000000
s hg38.chr15_KI270851v1_alt    191933 6 +    263054 TGCCCA
s panTro5.chr15              73804825 6 -  83230942 CGCCCG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108667 6 -  99763055 CGCCCG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157127 6 -    281578 CGCCCG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71016066 6 + 121039945 CGCCCG
i nomLeu3.chr6              C 0 T 93
s macFas5.chr7              165646811 6 - 171882078 CGCCAA
i macFas5.chr7              C 0 C 0
s calJac3.chr6              154521687 6 - 158406734 CGCCGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353807 6 -   2682657 CGCCAG
i saiBol1.JH378292          C 0 C 0
s canFam3.chr3               60042244 6 -  91889043 TGTCCA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56138254 437 + 145441459 I
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I
e dasNov3.JH562051             429623 0 +    563711 C
e aotNan1.NW_018503298v1       441342 0 +   3831555 C
e otoGar3.GL873689             467769 0 +   3845361 C
e cebCap1.NW_016107707v1       378034 0 -   2086007 C
e colAng1.NW_012115278v1       490188 11 -   4457520 I
e manLeu1.NW_012102332v1       511082 0 -   3636681 C
e cerAty1.NW_012001462v1       458333 0 +   4116138 C
e macNem1.NW_012011934v1       501200 0 +   2379783 C
e rheMac8.chr7              164325831 0 - 169600520 C
e chlSab2.chr26              53890624 0 +  58131712 C

a score=110816.000000
s hg38.chr15_KI270851v1_alt    191939 57 +    263054 TGCTTTCTGCGTTACGTTTAT-------TCTTGTATCCACGCACAAGAAATGTCAGTGGGTGTC
s panTro5.chr15              73804831 57 -  83230942 TGCTTTCTGCATTACGTTTAT-------TCTTGTATCCATGCAGAAGAAATGTCAGTGGTTTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108673 57 -  99763055 TGCTTTCTGCGTTACGTTTAT-------TCTTGTATCCATGCGGAAGAAATGTCAGTGGGTTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157133 57 -    281578 TGCTTTCTGCGTTACGTTTAT-------TCTTGTATCCATGCAGAAGAAATGTCAGTGGGTTTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71015979 57 + 121039945 TGCTTTCTGCATTACATTTAT-------TCTTGTATCCGTGCACAAGAAATGTAGGTAGGTGTC
i nomLeu3.chr6              T 93 C 0
s macFas5.chr7              165646817 64 - 171882078 TGCTTTCTGCATTACGTTTATTCTTGTATCTTGTATCCATGCACAAGAAATGTAAGTAGGTGCC
i macFas5.chr7              C 0 C 0
s calJac3.chr6              154521693 57 - 158406734 TGCTTTCTGCATTATGTATAT-------TCTTGTATCCATGCACAAGACATGTAAGTGGGTGCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353813 57 -   2682657 TGTTTTCTGCATTATGTATAT-------TCTTGTTTCCATGCGCAAGAAATCTAAGTGGGTGCC
i saiBol1.JH378292          C 0 C 0
s otoGar3.GL873689             467769 32 +   3845361 -----------------------------CTCGTGTCCATGCATAAGAAATTTAAACGGGT---
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60042250 25 -  91889043 TGCT------------------------TTTTGGAAATACACTGAAAAA---------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             429623 33 +    563711 TGCTTTCTGC------------------ATCTGTATCCATGCCCAAAGAAT-------------
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56138254 437 + 145441459 I
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I
e aotNan1.NW_018503298v1       441342  0 +   3831555 C
e cebCap1.NW_016107707v1       378034  0 -   2086007 C
e colAng1.NW_012115278v1       490188 11 -   4457520 I
e manLeu1.NW_012102332v1       511082  0 -   3636681 C
e cerAty1.NW_012001462v1       458333  0 +   4116138 C
e macNem1.NW_012011934v1       501200  0 +   2379783 C
e rheMac8.chr7              164325831  0 - 169600520 C
e chlSab2.chr26              53890624  0 +  58131712 C

a score=8577.000000
s hg38.chr15_KI270851v1_alt    191996 12 +    263054 AGTGCTTATTAG
s panTro5.chr15              73804888  7 -  83230942 AA-----AATAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108730  7 -  99763055 AA-----AATAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157190  7 -    281578 AA-----AATAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71016036 12 + 121039945 AATGCTTATTAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165646881 12 - 171882078 AATGCTCATTAG
i macFas5.chr7              C 0 T 98
s calJac3.chr6              154521750 12 - 158406734 AATGTTTGTTAG
i calJac3.chr6              C 0 T 93
s saiBol1.JH378292             353870 12 -   2682657 AATGTTTGTTAG
i saiBol1.JH378292          C 0 T 93
s mm10.chr7                  56138691 12 + 145441459 AGTAATTAATAA
i mm10.chr7                 I 437 C 0
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I
e dasNov3.JH562051             429656  0 +    563711 C
e canFam3.chr3               60042275  0 -  91889043 C
e aotNan1.NW_018503298v1       441342  0 +   3831555 C
e otoGar3.GL873689             467801  0 +   3845361 C
e cebCap1.NW_016107707v1       378034  0 -   2086007 C
e colAng1.NW_012115278v1       490188 11 -   4457520 I
e manLeu1.NW_012102332v1       511082  0 -   3636681 C
e cerAty1.NW_012001462v1       458333  0 +   4116138 C
e macNem1.NW_012011934v1       501200  0 +   2379783 C
e rheMac8.chr7              164325831  0 - 169600520 C
e chlSab2.chr26              53890624  0 +  58131712 C

a score=2300.000000
s hg38.chr15_KI270851v1_alt    192008 1 +    263054 T
s panTro5.chr15              73804895 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108737 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157197 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71016048 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6              154521669 1 - 158406734 T
i calJac3.chr6              T 93 C 0
s saiBol1.JH378292             353789 1 -   2682657 T
i saiBol1.JH378292          T 93 C 0
s mm10.chr7                  56138703 1 + 145441459 C
i mm10.chr7                 C 0 C 0
s dasNov3.JH562051             429656 1 +    563711 T
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I
e canFam3.chr3               60042275 0 -  91889043 C
e aotNan1.NW_018503298v1       441342 0 +   3831555 C
e otoGar3.GL873689             467801 0 +   3845361 C
e cebCap1.NW_016107707v1       378034 0 -   2086007 C
e colAng1.NW_012115278v1       490188 11 -   4457520 I
e manLeu1.NW_012102332v1       511082 0 -   3636681 C
e cerAty1.NW_012001462v1       458333 0 +   4116138 C
e macNem1.NW_012011934v1       501200 0 +   2379783 C
e rheMac8.chr7              164325831 0 - 169600520 C
e chlSab2.chr26              53890624 0 +  58131712 C
e macFas5.chr7              165646893 98 - 171882078 T

a score=5500.000000
s hg38.chr15_KI270851v1_alt    192009 1 +    263054 C
s panTro5.chr15              73804896 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108738 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157198 1 -    281578 C
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71016049 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012102332v1       511082 1 -   3636681 C
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154521670 1 - 158406734 C
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353790 1 -   2682657 C
i saiBol1.JH378292          C 0 C 0
s mm10.chr7                  56138704 1 + 145441459 C
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60042275 1 -  91889043 C
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             429657 1 +    563711 C
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I
e aotNan1.NW_018503298v1       441342 0 +   3831555 C
e otoGar3.GL873689             467801 0 +   3845361 C
e cebCap1.NW_016107707v1       378034 0 -   2086007 C
e colAng1.NW_012115278v1       490188 11 -   4457520 I
e cerAty1.NW_012001462v1       458333 0 +   4116138 C
e macNem1.NW_012011934v1       501200 0 +   2379783 C
e rheMac8.chr7              164325831 0 - 169600520 C
e chlSab2.chr26              53890624 0 +  58131712 C
e macFas5.chr7              165646893 98 - 171882078 T

a score=108940.000000
s hg38.chr15_KI270851v1_alt    192010 21 +    263054 AGATGTTTAGAGTAATTGCCC
s panTro5.chr15              73804897 21 -  83230942 AGATGTTTAGAGTAATCGCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108739 21 -  99763055 AGATGTTTAGAGTAATCGCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157199 21 -    281578 AGATGTTTAGAGTAATCGCCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71016050 21 + 121039945 AGACGTTTAGAGTAAACGCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164325831 21 - 169600520 AGATGTTTAAAGTAATCGCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165646795 21 - 171882078 AGATGTTTAAAGTAATCGCCA
i macFas5.chr7              T 98 C 0
s macNem1.NW_012011934v1       501200 21 +   2379783 AGATGTTTAAAGTAATCGCCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       458333 21 +   4116138 AGATGTTTAAAGTAATCGCCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53890624 21 +  58131712 AGATGTTTAAAGTAATCGCCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       511083 21 -   3636681 AGATGTTTAAAGTAATCGCCA
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154521671 21 - 158406734 AGATGTTTAACGTCAACGCCG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353791 21 -   2682657 TGATGTTTAACGTCATCGCCA
i saiBol1.JH378292          C 0 C 0
s mm10.chr7                  56138705  4 + 145441459 -------------AAAC----
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60042276 21 -  91889043 AGAAATTTTAAAAAATTGCTA
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             429658  6 +    563711 --ATGTGT-------------
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116296804 111 + 116334831 I
e proCoq1.NW_012148396v1     13513248 59 +  16154928 I
e aotNan1.NW_018503298v1       441342  0 +   3831555 C
e otoGar3.GL873689             467801  0 +   3845361 C
e cebCap1.NW_016107707v1       378034  0 -   2086007 C
e colAng1.NW_012115278v1       490188 11 -   4457520 I

a score=2677.000000
s hg38.chr15_KI270851v1_alt    192031 1 +    263054 G
s panTro5.chr15              73804918 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108760 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157220 1 -    281578 G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71016071 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164325852 1 - 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165646816 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       501221 1 +   2379783 A
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       458354 1 +   4116138 A
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53890645 1 +  58131712 A
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       511104 1 -   3636681 A
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154521692 1 - 158406734 G
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353812 1 -   2682657 G
i saiBol1.JH378292          C 0 C 0
s proCoq1.NW_012148396v1     13513307 1 +  16154928 G
i proCoq1.NW_012148396v1    I 59 C 0
e mm10.chr7                  56138709 0 + 145441459 C
e micMur3.chr9              116296804 111 + 116334831 I
e dasNov3.JH562051             429664 0 +    563711 C
e canFam3.chr3               60042297 1 -  91889043 I
e aotNan1.NW_018503298v1       441342 0 +   3831555 C
e otoGar3.GL873689             467801 0 +   3845361 C
e cebCap1.NW_016107707v1       378034 0 -   2086007 C
e colAng1.NW_012115278v1       490188 11 -   4457520 I

a score=299640.000000
s hg38.chr15_KI270851v1_alt    192032 33 +    263054 TGCTTTCTGCATTACATTTAT-------TCTTGTATCCAT
s panTro5.chr15              73804919 33 -  83230942 TGCTTTCTGCGTTACGTTTAT-------TCTTGTATCCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108761 33 -  99763055 TGCTTTCTGCGTTACGTTTAT-------TCTTGTATCCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157221 33 -    281578 TGCTTTCTGCGTTACGTTTAT-------TCTTGTATCCAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71016072 33 + 121039945 TGCTTTCTGCATTACGTTTAT-------TTTTGCATCCAT
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7              164325853 40 - 169600520 TGCTTTCTGCATTACGTTTATTCTTGTATCTTGTATCCAT
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              165646817 40 - 171882078 TGCTTTCTGCATTACGTTTATTCTTGTATCTTGTATCCAT
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011934v1       501222 40 +   2379783 TGCTTTCTGCATTACGTTTATTCTTGTATCTTGTATCCAT
i macNem1.NW_012011934v1    C 0 I 1
s cerAty1.NW_012001462v1       458355 40 +   4116138 TGCTTTCTGCATTACGTTTATTCTTGTGTCTTGTATCCAT
i cerAty1.NW_012001462v1    C 0 I 1
s chlSab2.chr26              53890646 40 +  58131712 TGCTTTCTGCATTACGTTTATTCTTGTATCTTGTATCCAT
i chlSab2.chr26             C 0 I 1
s manLeu1.NW_012102332v1       511105 40 -   3636681 TGCTTTCTGCATTACGTTTATTCTTGTATCTTGTATCCAT
i manLeu1.NW_012102332v1    C 0 I 1
s calJac3.chr6              154521693 33 - 158406734 TGCTTTCTGCATTATGTATAT-------TCTTGTATCCAT
i calJac3.chr6              C 0 I 2
s saiBol1.JH378292             353813 33 -   2682657 TGTTTTCTGCATTATGTATAT-------TCTTGTTTCCAT
i saiBol1.JH378292          C 0 I 3
s micMur3.chr9              116296915 33 + 116334831 TGCTTTCTGCATCATGTGTAT-------TCTTGTATCCAT
i micMur3.chr9              I 111 I 1
s proCoq1.NW_012148396v1     13513308 33 +  16154928 TGCTTTCTGCATCATGTGTAT-------TCTTGTATCCAT
i proCoq1.NW_012148396v1    C 0 I 1
s mm10.chr7                  56138709 34 + 145441459 TCCATTGTGTATTGATTGTGT------GTATTGTACCCAG
i mm10.chr7                 C 0 I 1
s canFam3.chr3               60042298 33 -  91889043 TACTTTCTGCATCATATATGT-------TTTTATATCCAC
i canFam3.chr3              I 1 I 1
e dasNov3.JH562051             429664  0 +    563711 C
e aotNan1.NW_018503298v1       441342  0 +   3831555 C
e otoGar3.GL873689             467801  0 +   3845361 C
e cebCap1.NW_016107707v1       378034  0 -   2086007 C
e colAng1.NW_012115278v1       490188 11 -   4457520 I

a score=8666.000000
s hg38.chr15_KI270851v1_alt    192065 1 +    263054 T
s panTro5.chr15              73804952 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108794 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157254 1 -    281578 C
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71016106 1 + 121039945 C
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr7              164325894 1 - 169600520 C
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              165646858 1 - 171882078 C
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011934v1       501263 1 +   2379783 C
i macNem1.NW_012011934v1    I 1 C 0
s cerAty1.NW_012001462v1       458396 1 +   4116138 C
i cerAty1.NW_012001462v1    I 1 C 0
s chlSab2.chr26              53890687 1 +  58131712 C
i chlSab2.chr26             I 1 C 0
s manLeu1.NW_012102332v1       511146 1 -   3636681 C
i manLeu1.NW_012102332v1    I 1 C 0
s colAng1.NW_012115278v1       490199 1 -   4457520 C
i colAng1.NW_012115278v1    I 11 C 0
s micMur3.chr9              116296949 1 + 116334831 C
i micMur3.chr9              I 1 C 0
s proCoq1.NW_012148396v1     13513342 1 +  16154928 C
i proCoq1.NW_012148396v1    I 1 C 0
s canFam3.chr3               60042332 1 -  91889043 C
i canFam3.chr3              I 1 C 0
e mm10.chr7                  56138743 1 + 145441459 I
e dasNov3.JH562051             429664 0 +    563711 C
e aotNan1.NW_018503298v1       441342 0 +   3831555 C
e otoGar3.GL873689             467801 0 +   3845361 C
e cebCap1.NW_016107707v1       378034 0 -   2086007 C
e saiBol1.JH378292             353846 3 -   2682657 I
e calJac3.chr6              154521726 2 - 158406734 I

a score=15561.000000
s hg38.chr15_KI270851v1_alt    192066 1 +    263054 A
s panTro5.chr15              73804953 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108795 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157255 1 -    281578 A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71016107 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164325895 1 - 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165646859 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       501264 1 +   2379783 A
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       458397 1 +   4116138 A
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53890688 1 +  58131712 A
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       511147 1 -   3636681 A
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       490200 1 -   4457520 A
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154521728 1 - 158406734 A
i calJac3.chr6              I 2 C 0
s cebCap1.NW_016107707v1       378034 1 -   2086007 A
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       441342 1 +   3831555 A
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116296950 1 + 116334831 A
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012148396v1     13513343 1 +  16154928 A
i proCoq1.NW_012148396v1    C 0 C 0
s mm10.chr7                  56138744 1 + 145441459 A
i mm10.chr7                 I 1 I 1
s canFam3.chr3               60042333 1 -  91889043 A
i canFam3.chr3              C 0 C 0
e dasNov3.JH562051             429664 0 +    563711 C
e otoGar3.GL873689             467801 0 +   3845361 C
e saiBol1.JH378292             353846 3 -   2682657 I

a score=4278382.000000
s hg38.chr15_KI270851v1_alt    192067 228 +    263054 CAAGAAATGTCAGTGGGTGCCAATGCTCATTAGGTATCCAGCCGGTTCCCCTGCAAACCATCACCAATGAGAACCCATCGGGACCGAGCCTGGGGACCATCCCGCAAGCCCACTTCCTCCTGGTGATGCTCAGCATGCTCACCCTGCAGCACAGCGCAAACAACCTTGACCTCCTGCTCAATTCCGGCACGCTGGCCCTCGCTCAGACGGCACTGCGCCTGATTGGTA
s panTro5.chr15              73804954 228 -  83230942 CAAGAAATGTCAGTAGGTGCCAATGCTCATTAGGTATCCAGCCGGTTCCCCTGCAAACCATCACCAATGAGAACCCGTCGGGACCCAGCCTGGGGACCATCCCGCAAGCCCGCTTCCTCCTGGTGATGCTCAGCATGCTCACCCTGCAGCACGGCGCAAACAACCTCGACCTTCTGCTCAATTCCGGCATGCTGGCCCTCACGCAGACGGCACTGCGCCTGATTGGTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74108796 228 -  99763055 CAAGAAATGTCAGTAGGTGCCAATGCTCATTAGGTATCCAGCCGGTTCCCCTGCAAACCATCACCAATGAGAACCCGTCGGGACCCAGCCTGGGGACCATCCCGCAAGCCCGCTTCCTCCTGGTGATGCTCAGCATGCTCACCCTGCAGCACGGCGCAAACAACCTCGACCTTCTGCTCAATTCCGGCATGCTGGCCCTCACGCAGACGGCACTGCGCCTGATTGGTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157256 228 -    281578 CAAGAAATGTCAGTAGGTGCCAATGCTCATTAGGTATCCAGCCGGTCCCCCTGCAAACCATCACCAATGAGAACCCATCGGGACCGAGCCTGGGGACCATCCCGCAAGCCCGCTTCCTCCTGGTGATGCTCAGCATGCTCACCCTGCAGCACGGCGCAAACAACCTCGACCTCCTGCTCAATTCCGGCATGCTGGCCCTCACACAGACGGCACTGCGCCTGATTGGTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71016108 228 + 121039945 CAATAAATGTCAGTGGGTGTCAATGCTTGTTAGGTATCCAGCCGGTTCCCCTGCAAACCATCACCAATGAGAACCCGTCGGGACCGAGCCTGGGGACCATCCCGCAAGCCCGCTTCCTCCTGGTGATGCTCAGCATGCTCACCCTGCAGCACGGCGCAAACAATCTCGACCTCCTGCTCAATTCTGGCATGCTGGCCCTCACGCAGACAGCACTGCGCCTGATTGGTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164325896 228 - 169600520 CAAGAAATGTAAGTAGGTGCCAATGCTCATTAGGTATCCAGCCGGTTCCCCTGCAAACCATTACCAATGAGAACCCGTCAGGACCGAGCCTGGGGACCATCCCACAAGCCCGCTTCCTCCTGGTGATGCTCAGCATGCTCACCCTGCAGCACGGCGCAAACAACCTCGACCTCCTGCTCAATTCCGGCACGCTGGCCCTCACGCAGACGGCACTGCGCCTGATTGGTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165646860 228 - 171882078 CAAGAAATGTAAGTAGGTGCCAATGCTCATTAGGTATCCAGCCGGTTCCCCTGCAAACCATTACCAATGAGAACCCGTCAGGACCGAGCCTGGGGACCATCCCACAAGCCCGCTTCCTCCTGGTGATGCTCAGCATGCTCACCCTGCAGCACGGCGCAAACAACCTCGACCTCCTGCTCAATTCCGGCACGCTGGCCCTCACGCAGACGGCACTGCGCCTGATTGGTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       501265 228 +   2379783 CAAGAAATGTAAGTAGGTGCCAATGCTCATTAGGTATCCAGCCGGTTCCCCTGCAAACCATTACCAATGAGAACCCGTCAGGACCGAGCCTGGGGACCATCCCACAAGCCCGCTTCCTCCTGGTGATGCTCAGCATGCTCACCCTGCAGCACGGCGCAAACAACCTCGACCTCCTGCTCAATTCCGGCACGCTGGCCCTCACGCAGACGGCACTGCGCCTGATTGGTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       458398 228 +   4116138 CAAGAAATGTAAGTAGGTGCCAATGCTCATTAGGTATCCAGCCGGTTCCCCTGCAAACCATTACCAATGAGAACCCGTCAGGACCGAGCCTGGGGACCATCCCACAAGCCCGCTTCCTCCTGGTGATGCTCAGCATGCTCACCCTGCAGCACGGCGCAAACAACCTCGACCTCCTGCTCAATTCCGGCACGCTGGCCCTCACGCAGACGGCGCTGCGCCTGATTGGTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53890689 228 +  58131712 CAAGAAATGTAAGTAGGTGCCAATGCTCATTAGGTATCCAGCCGGTTCCCCTGCAAACCATTACCAATGAGAACCCGTCAGGACCGAGCCTGGGGACCATCCCACAAGCCCGCTTCCTCCTGGTGATGCTCAGCATGCTCACCCTGCAGCACGGTGCAAACAACCTCGACCTCCTGCTCAATTCCGGCACGCTGGCCCTCACGCAGACGGCACTGCGCCTGATTGGTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       511148 228 -   3636681 CAAGAAATGTAAGTAGGTGCCAATGCTCATTAGGTATCCAGCCGGTTCCCCTGCAAACCATTACCAATGAGAACCCGTCAGGACCGAGCCTGGGGACCATCCCACAAGCCCGCTTCCTCCTGGTGATGCTCAGCATGCTCACCCTGCAGCACGGTGCAAACAACCTCGACCTCCTGCTCAATTCCGGCACGCTGGCCCTCACGCAGACGGCGCTGCGCCTGATTGGTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       490201 228 -   4457520 CAAGAAATGTAAGTAGGTGCCAATGCTTATTAGGTATCCAGCCGGTTCCCCTGCAAACCATTACCAACGAGAACCCGTCAGGACCGAGCCTGGGGACCATCCCACAAGCCCGCTTCCTCCTGGTGATGCTCAGCATGCTCACCCTGCAGCACGGCGCAAACAACCTCGACCTCCTGCTCAATTCCGGCACGCTGGCCCTCACGCAGACGGCACTGCGCCTGATTGGTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154521729 228 - 158406734 CAAGACATGTAAGTGGGTGCCAATGTTTGTTAGGTATCCAGCCGGTTCCCCTGCAAACCATTACCAATGAGAACCCATCAGGACCAAGCCTGGGGACCATCCCGCAAGCCCGCTTCCTCCTGGTGATGCTGAGCATGCTCACCCTGCAGCACGGTGCCAACAACCTCGACCTCCTGCTCAATTCCGGCACGTTGGCCCTCACGCAGACGACACTGCGCCTGATTGGTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             353849 228 -   2682657 CAAGAAATCTAAGTGGGTGCCAATGTTTGTTAGGTATCCAGCCGGTTCCCCTGCAAACCATTACCAATGAGAACCCGTCAGGACCAAGCCTGGGGACCATCCCGCAAGCCCGCTTCCTCCTGGTGATGCTGAGCCTGCTCACCCTGCAGCACGGCGCCAACAGCCTCAACCTCCTGCTCAACTCTGGCATGCTGGCCCTCACGCAGACCACGCTGCGCCTCATTGGTA
i saiBol1.JH378292          I 3 C 0
s cebCap1.NW_016107707v1       378035 228 -   2086007 CGAGAAATGTAAGTGGGTGCCAATGTTTGTTAGGTATCCAGCCGGTTCCCCTGCAAACCATTACCAATGAGAACCCATCAGGACCGAGTCTGGGGACCATCCCGCAAGCCCGCTTCCTCCTGGTGATGCTGAGCATGCTCACCCTGCAGCACGGCGCCAACAACCTCGACCTCCTGCTCAATTCCGGCATGCTGGCCCTCACACAGACTGCACTGCGCCTGATTGGTA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       441343 228 +   3831555 TAAGAAATGTAAGTGCATGCCAATGTTTATTAGGTATCCAGCCGGTTCCCCTGCAAACCATTACCAATGAGAACCCGTCAGGACCAAGCCTGGGGACCATCCCGCAAGCCCGCTTCCTCCTGGTGATGCTGAGTATGCTCACCCTGCAGCACGGCGCCAACAACCTCGACCTCCTGCTCAATTCCGGCACGCTGGCCCTCATGCAGACCACACTGCGCCTGATTGGTA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116296951 228 + 116334831 CAAGAAATTTAAGTGGGCGCCAATGCTTATTAGGTATCCAGCCTGTTCCCCTGCAAACAATTACCAACGAGAACCCGTCAGGACCGAGCCTGGGAACGATCCCGCAAGCACGCTTCCTCCTGGTGATGCTCAGCATGCTCACCCTGCAGCATGGAGCAAACAACCTTGACCTCCTGCTCAACTCTGGCACACTCGCCCTCACGCAGACAGCACTGCGGCTGATTGGTA
i micMur3.chr9              C 0 I 6178
s proCoq1.NW_012148396v1     13513344 228 +  16154928 CAAGAAATTTAAGTGAGCGCCAATGCTTATTAGGTATCCAGCCTGTTCCCCTGCAAACCATTACCAATGAGAACCCGTCAGGACCGAGCCTGGGGACGATCCCGCAAGCACGCTTCCTCCTGGTGATGCTCAGCATGCTCACCCTGCAGCATGGAGCAAACAACCTTGACCTCCTGCTCAACTCCGGCACGCTCGCCCTCACACAGACGGCACTGCGGCTGATTGGTA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             467801 209 +   3845361 -------------------CCAATGCTTGTTAGGTATCCAGCCTGTTCCCCTGCAAACCATCACCAATGAGAACCCGTCGGGACCAAGCCTGGGGACCATCCCACAAGCGCGCTTCCTCCTGGTGATGCTCAGCATGCTCACGCTGCAGCACGGGGCCAACAACCTCGACCTCCTACTCAACTCCGGCACCCTCGCCCTCACACAGACGGCACTGCGACTGATTGGTA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56138746 227 + 145441459 TAAGGAATTCAAA-GAATGTCAATGCTTGTTAGGTATCCAGCCTGTTCCCCTACAAACCATTACCAATGAGAACCCGGCGGGACCAAGTCTGGGTACCATCCCACAAGCTCGATTTCTTCTGGTGATGCTCAGCATGCTCACCCTGCAGCATGGTGCAAACAACCTTGACCTCCTGCTCAACTCAGGCACGCTGGCACTCACTCAGACAGCCCTAAGGCTGATCGGTA
i mm10.chr7                 I 1 C 0
s canFam3.chr3               60042334 228 -  91889043 CAAGAAATTTATGTGAGTGTCCATGCTTTTTAGGTATCCAGCCTGTCCCCCTACAAACCATTACCAATGAGAATCCATCAGGACCAAGTCTGGGGACAACCCCACAAGCTCGCTTTCTCCTGGTAATGCTCAGCATGCTCACCCTGCAGCATGGAGCAAACAACCTGAACCTCCTGTTGAACTCAGGCATGCTCGCCCTCACACAGACAGCACTTCGGCTTATTGGTA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             429664 211 +    563711 -----------------TGCCAATGCTTCTTAGGCATCCAGCCTGTTCCCCTGCAAACAATTACCAATGAGAACCCGTCGGGCCCCAGCCTCGGGACCATCCCACAAGCTCGCTTCCTCCTGGTGATGCTCAGCATGCTCACGCTGCGGCACGGTGCCCACAACCTGGACCTCCTGCTCAACTCGGGCACGCTGGCCCTCACGCAGACGGCTTTGCGGCTCATCGGTG
i dasNov3.JH562051          C 0 C 0

a score=61110.000000
s hg38.chr15_KI270851v1_alt    192295 3 +    263054 GGT
s panTro5.chr15              73805182 3 -  83230942 GGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74109024 3 -  99763055 GGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157484 3 -    281578 GGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71016336 3 + 121039945 GGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164326124 3 - 169600520 GGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165647088 3 - 171882078 GGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       501493 3 +   2379783 GGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       458626 3 +   4116138 GGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53890917 3 +  58131712 GGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       511376 3 -   3636681 GGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       490429 3 -   4457520 GGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154521957 3 - 158406734 GGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             354077 3 -   2682657 GGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       378263 3 -   2086007 GGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       441571 3 +   3831555 GGT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13513572 3 +  16154928 GGT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             468010 3 +   3845361 GGT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56138973 3 + 145441459 GGT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60042562 3 -  91889043 GGT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             429875 3 +    563711 GGT
i dasNov3.JH562051          C 0 I 1635
e micMur3.chr9              116297179 6178 + 116334831 I

a score=1143159.000000
s hg38.chr15_KI270851v1_alt    192298 144 +    263054 CTGCACTGGCTTGAGAGCCTTTGGGAA-----------------------------------------------------------------------------------------------AACGTCAAGA----TTTTGCTTTGATTTATT-------------------TTC-TTTCTTTTTTTTT------AAAAA-----------AGCTttttgtaa----------------------------------attatgg----------------taagacacaaatagcagaaag--tg--tagc------------atttt-aacgtcgcaattcagcgg
s panTro5.chr15              73805185 140 -  83230942 CTGCACCCGCTTGAGCGCCTTTGGGAA-----------------------------------------------------------------------------------------------AATGTCAAGA----ttttgctttgatttgtt-------------------ttcttttcttttttttt--------tAA-----------AGCTttttgtaa----------------------------------attatgg----------------taagacacaaat---agaaag--tg--tacc------------atttt-aacgtcgcaattcagcgg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74109027 140 -  99763055 CTGCACCCGCTTGAGCGCCTTTGGGAA-----------------------------------------------------------------------------------------------AATGTCAAGA----ttttgctttgatttgtt-------------------ttcttttcttttttttt--------tAA-----------AGCTttttgtaa----------------------------------attatgg----------------taagacacaaat---agaaag--tg--tacc------------atttt-aacgtcgcaattcagcgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157487 139 -    281578 CTGCACCTGCTTGAGCGCCCTTGGGAA-----------------------------------------------------------------------------------------------AATGTCAAGA----ttttgctttgatttctt-------------------ttcttttcttttttttt---------AA-----------AGCTGtttgtaa----------------------------------attatgg----------------taagacacaaat---agaaag--tg--tacc------------atttt-aacgtcacaattcagtgg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71016339 151 + 121039945 CTGCACTGGCTTGAGAGCCTTTGGGAA-----------------------------------------------------------------------------------------------AATGTCAAGA----ttttgctttgatatctt-------------------ttcttttcttttttttttttttttttAA-----------AGCTttttgtaa----------------------------------attatgg----------------taagacacaaatggcagaaag--tg--tacc------------atttt-aacgtcgcaattcagcgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164326127 129 - 169600520 CTGCACCGGCTTGAGAGCCTTTGGGAA-----------------------------------------------------------------------------------------------AACATCAAGA----TTTTGCTTTC------------------------------TTTTTTTTTTTTT----------------------AACTttttgtaa----------------------------------attatgg----------------taagacacaaacagcagaaag--tg--tacc------------atttt-aacgtcgcaattcagcgg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165647091 129 - 171882078 CTGCACCGGCTTGAGAGCCTTTGGGAA-----------------------------------------------------------------------------------------------AACATCAAGA----TTTTGCTTTC------------------------------TTTTTTTTTTTTT----------------------AACTTTTTGTAA----------------------------------attatgg----------------taagacacaaatagcagaaag--tg--tacc------------atttt-aacgtcgcaattcagcgg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       501496 139 +   2379783 CTGCACCGGCTTGAGAGCCTTTGGGAA-----------------------------------------------------------------------------------------------AACATCAAGA----ttttgctttctttttt--------------------ttttttttttttttttt----------------------AACTttttgtaa----------------------------------attatgg----------------taagacacaaatagcagaaag--tg--tacc------------atttt-aacgttgcaattcagcgg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       458629 143 +   4116138 CTGCACCGGCTTGAGAGCCTTTGGGAA-----------------------------------------------------------------------------------------------AACATCAAGA----ttttgctttgatttctttcc----------------ttttttttttttttttt----------------------AACTttttgtaa----------------------------------attatgg----------------taagacacaaatagcagaaag--tg--tacc------------atttt-aacgtcgcaattcagcag
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53890920 140 +  58131712 CTGCACCGGCTTGAGAGCCTTTGGGAA-----------------------------------------------------------------------------------------------AACATCAAGA----ttttggtttga----tttcct---------------ttttttttttttttttt----------------------aactttttGTAA----------------------------------attatgg----------------taagacacaaatagcagaaag--tg--tacc------------atttt-aacgtcgcaattcagcag
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       511379 144 -   3636681 CTGCACCGGCTTGAGAGCCTTTGGGAA-----------------------------------------------------------------------------------------------AACATCAAGA----ttttgctttgatttctttctt---------------ttttttttttttttttt----------------------AACTttttgtaa----------------------------------attatgg----------------taagacacaaatagcagaaag--tg--tacc------------atttt-aacgtcgcaattcagcag
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       490432 140 -   4457520 CTGCACCGGCTTGAGAGCCTTTGGGAA-----------------------------------------------------------------------------------------------AACATCAAGA----ttttgctttgatttctt-------------------tcttttttttttttttA----------------------AACTTTTTGTAA----------------------------------ATTATGG----------------TAAGACAcaaatagcagaaag--tg--tacc------------atttt-aatgtcgcaattcagcag
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154521960 126 - 158406734 CTGCACCGGCTTGAGAGCCTTTGGGAT-----------------------------------------------------------------------------------------------GATGTCAAGA----TTTTACTTTGATTTC-----------------------------TTTTTTTAA----------------------AGCTttttgtaa----------------------------------attgtgg----------------taag----aaatagtaggaag--tg--tatc------------gtttt-aactgtacaattcagtgg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             354080 157 -   2682657 CTGCACCGGCTTGAGAGCCTGTGGGAC-----------------------------------------------------------------------------------------------AACGTCAAGA----TTTTGCTTTGAtttcttttttctttctttctttcttttttttttttttttttA----------------------AGCTCtttgtaa----------------------------------attgtgg----------------taag----aaatagcaggaag--tgtttatc------------atttt-aaatttacagttcagtga
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       378266 134 -   2086007 CTGCACCGGCTTGAGAGCCTTTGGGAC-----------------------------------------------------------------------------------------------AACGTCAAGA----TTTTGCTTTGATTTC---------------------TTTCTTTTTTTTTTTAA----------------------AGCTttttgtaa----------------------------------attgtgg----------------taag----aaatagcaggaag--ta--tatc------------atttt-aactttacgattcagtgg
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       441574 128 +   3831555 CTGCACCGGCTTGAGAGCCTTTGGGAC-----------------------------------------------------------------------------------------------AACATCAAAA----TTTTGCTTTGATTTT---------------------------TTTATTTTTAA----------------------AGCTttttataa----------------------------------attgtgg----------------taag----aaatagcaggaag--tg--tgtc------------atttt-aactttacaattcagtgg
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13513575 134 +  16154928 CGGCACCAGCTTTAGGGCCT-TATGAA-----------------------------------------------------------------------------------------------AATGTCAAGA-----TTTGCTTTC--------------------------TCTCTCTCTTTTATTAA--------AAA-----------ACTTttttaaaa----------------------------------attgtgg----------------tgaagtacaaataatgtaaaa--tg--tacc------------atttt-aagtttacaattcaatgg
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             468013 135 +   3845361 TGGCACTGGCTTTAGGGCCT-CGAGAA-----------------------------------------------------------------------------------------------AATGTCAAGA-----TTTGCCTTC--------------------------TCTTTCTCTTTCCTTAA--------AAA-----------AAGTTTTTAAAG----------------------------------attatag----------------taaaatataaatgacctaaaa--tt--tgcc------------attttaaagtttacaattcaTTgg
i otoGar3.GL873689          C 0 I 969
s mm10.chr7                  56138976 317 + 145441459 TGGAATTGGCTTTGGGCCCTTTAGGAAACTGTGACTTACTTTCTCTCCTTAAAATAAAATTGTAGTAAAGTACGCATAACGTAAAAGCAAGCCTTTTAAATGTGTTGAGTTTGTAACTGAACAATATTAGGGACTTTTTTTCCTTTATTTATT-------------------TTCTTTATTTTTCTCTT--------TGATCTTGTTGCtttgttttttaagacaggatttcaccacgcatgcttagcttagagctcactatggagcctaggctgaccttgaagttaaagacatcaacaagcctt--tgcctccagagtgttgggttt-aaaggtgtgggccaccat
i mm10.chr7                 C 0 I 3
s canFam3.chr3               60042565 128 -  91889043 TGGCACTGCTTTAAGTG-ATTTATGAA-----------------------------------------------------------------------------------------------AATGTCAAGA----TTTTGCCTTC--------------------------ATGTCTTCTTTCTTTAT----------------------AA---TTTCAAA----------------------------------A----------------------TAAG-----AGTGACATAAAA--CT--TACCCTCttaacaa--ctttt-aagtttatcattcagtag
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116297179 6178 + 116334831 I
e dasNov3.JH562051             429878 1635 +    563711 I

a score=949369.000000
s hg38.chr15_KI270851v1_alt    192442 86 +    263054 tattaaatacattcacaattttctagagtcatcaccactgtctagttgtagaactttttcatcactataaatgca-------ccccat-----ttagc
s panTro5.chr15              73805325 86 -  83230942 tatcaaatacatttacgattttctagagtcatcaccactgtctagttgtagaactttttcatcactataaatgca-------ccccat-----ttagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74109167 86 -  99763055 tatcaaatacatttacgattttctagagtcatcaccactgtctagttgtagaactttttcatcactataaatgca-------caccat-----ttagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       157626 86 -    281578 tatcaaatacatttacgattttctagagtcatcaccactgtctagttgtagaactttttcatcactataaatgca-------caccAT-----TTAGC
i gorGor5.CYUI01000141v1    C 0 I 1039
s nomLeu3.chr6               71016490 86 + 121039945 tattaaatacattcacaattttctagagtcatcaccactgtctagttgtagaactttttcatcactataaatgca-------caccat-----ttagc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164326256 86 - 169600520 tattaaatacattcacacttttctagagtcatcaccaccatctagttgtagaatattttcatcactataaatgca-------ccccat-----ttagc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165647220 86 - 171882078 tattaaatacattcacacttttctagagtcatcaccaccatctagttgtagaatattttcatcactataaatgca-------ccccat-----ttagc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       501635 86 +   2379783 tattaaatacattcacacttttctagagtcatcaccaccatctagttgtagaatattttcatcactataaatgca-------ccccat-----ttagc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       458772 86 +   4116138 tattaaatacattcacacttttctagagtcatcaccaccatctagttgtagaattttttcatcactataaatgca-------ccccat-----ttagc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53891060 86 +  58131712 tattaaatacattcacatttttctagagtcatcaccaccgtctagttgtagaattttttcatcactataaatgca-------ccccat-----ttagc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       511523 86 -   3636681 tattaaatacattcacacttttctagaggcatcaccaccatctagttgtagaattttttcgtcactataaatgca-------ccccat-----ttagc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       490572 86 -   4457520 tattaaatacattcacacttttctagagtcatcaccaccgtctagttgtagaaatttttcatcactataaatgca-------ccccat-----ttagc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154522086 83 - 158406734 tattaaatacattcacggttttctagagtcatcaccactgtctggttctagaacttgttcatcactgtaaatcta-------ccccat-----tt---
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             354237 83 -   2682657 cattaaatacattcacagttctctagagtcatcaccactgtctggttctagaactttttcatcactataaatgta-------ccccat-----tt---
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       378400 83 -   2086007 tattaaatacattcacagttttctagagtcatcaccactgtctggttctagaacttgttcatcactgtaaatgta-------ccccat-----tt---
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       441702 83 +   3831555 tattaaatacattcacaattttctagagtcatcaccactgtctggttctaggattttttcatcactataaatgta-------ccccat-----tt---
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13513709 84 +  16154928 tattaagtacattcatacttttgtggaactatcactgctgtctggttctagaac--tttcatcactccagataca-------ccccat-----ttagc
i proCoq1.NW_012148396v1    C 0 C 0
s mm10.chr7                  56139296 87 + 145441459 cATCAGGGacattcatg-ttttgagcagctattactgctgtcttgtttcagaaatttttcataaacacaaattaa-------atctatgtccatt---
i mm10.chr7                 I 3 C 0
s canFam3.chr3               60042693 92 -  91889043 cattaagcacatctacaatgttgtataagcat-gccattatctagttctgtaacttttttgtcacctcaaatagaaagccacacccag-----ttagt
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116297179 6178 + 116334831 I
e dasNov3.JH562051             429878 1635 +    563711 I
e otoGar3.GL873689             468148 969 +   3845361 I

a score=87676.000000
s hg38.chr15_KI270851v1_alt    192528 12 +    263054 catcagtcctga
s panTro5.chr15              73805411 12 -  83230942 catcagtcctca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74109253 12 -  99763055 catcagtcctca
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               71016576 12 + 121039945 catcagtcctga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164326342 12 - 169600520 aatcagtcctga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165647306 12 - 171882078 aatcagtcctga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       501721 12 +   2379783 aatcagtcctga
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       458858 12 +   4116138 aatcagtcctga
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53891146 12 +  58131712 aatcagccctga
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       511609 12 -   3636681 aatcagtcctga
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       490658 12 -   4457520 aatcagtcctga
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154522169  7 - 158406734 -----gtcctga
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             354320  7 -   2682657 -----gtcctga
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       378483  7 -   2086007 -----gtcctga
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       441785  7 +   3831555 -----gtcctga
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13513793 12 +  16154928 aatcactcctca
i proCoq1.NW_012148396v1    C 0 I 33
s mm10.chr7                  56139383  9 + 145441459 tatcagtca---
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60042785 12 -  91889043 gatgattcctga
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116297179 6178 + 116334831 I
e dasNov3.JH562051             429878 1635 +    563711 I
e otoGar3.GL873689             468148 969 +   3845361 I
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I

a score=301361.000000
s hg38.chr15_KI270851v1_alt    192540 37 +    263054 ctcccctgctctccagcccctggta--gtcacaaatctg
s panTro5.chr15              73805423 37 -  83230942 ctcctctgccctccagcccctggta--gtcacaaatctg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74109265 37 -  99763055 ctcctctgccctccagcccctggta--gtcacaaatctg
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               71016588 37 + 121039945 ctcccctgccctccagcccctggta--gtcacaaatcta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164326354 37 - 169600520 ttcccctgccctccagcctctagga--gtcacaaatctg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165647318 37 - 171882078 ttcccctgccctccagcctctagga--gtcacaaatctg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       501733 37 +   2379783 ttcccctgccctccagcctctagga--gtcacaaatctg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       458870 37 +   4116138 ttcccctgccctccagcctctagga--gtcacaaatctg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53891158 37 +  58131712 ttcccctgccctccagtctctagga--gtcacaaatctg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       511621 37 -   3636681 ctcccctgccctccagcctctagga--gtcacaaatctg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       490670 37 -   4457520 ttcccctgccctccagcctctggga--gtcacaaatctg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154522176 39 - 158406734 ttcccctgccctccatccccaggcagtgtcacaaatctg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             354327 23 -   2682657 ttccgct--------------ggca--gtcacaaatctg
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       378490 37 -   2086007 ttcccctgccctccatcccctggca--gtcacaaatctg
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       441792 37 +   3831555 ttcccctgccctctatcccctggca--gtcacaaatctg
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56139392 35 + 145441459 --ctattgttgtcatgtcccagaaa--actaaaaatcag
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60042797 37 -  91889043 tttcccactcgctcagcttttggca--acaacaaatctg
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13513805 33 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e otoGar3.GL873689             468148 969 +   3845361 I
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I

a score=3297746.000000
s hg38.chr15_KI270851v1_alt    192577 316 +    263054 ctttctctgtctatggatttgcatatcccggatatttcatataaatggaatcataccatttgt-ggc-ctttgtgtctgggttatttcatttggtatatatcagtacttta----tttttatggctgaaaaagatttcattgtatgaatatataacattttgtttactcatttatctgttgatggacatttgggttggttttgccttttgacttttgtgaatagtgctgctaggaacatttatatacaagtacttgtttgaacacttgtttctagttcttttgattatacacctaggactggaa---ttacag---ggtcatatggta
s panTro5.chr15              73805460 312 -  83230942 ctttctctgtctatggatttgcatatcctggatatttcatataaatggaatcataccatttgt-ggc-ctttgtgtctgggttatttcatttggtatatatcagtacttta----tttttatggctgaaaaagatttcattgtatgaatatataacattttgt----tcatttatctgttgatggacatttgggttggttttgccttttgacttttgtgaatagtgctgctaggaacatttatatacaaatacttgtttgaatgcttgtttctagttcttttgattatacacctaggactggaa---ttacag---ggtcatatggta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74109302 316 -  99763055 ctttctctgtctatggatttgcatatcctggatatttcatataaatggaatcataccatttgt-ggc-ctttgtgtctgggttatttcatttggtatatatcagtacttta----tttttatggctgaaaaagatttcattgtatgaatatataacattttgtttattcatttatctgttgatggacatttgggttggttttgccttttgacttttgtgaatagtgctgctaggaacatttatatacaaatacttgtttgaacacttgtttctagttcttttgattatacacctaggactggaa---ttacag---ggtcatatggta
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               71016625 315 + 121039945 ctttctctgtctatggatttgcatatcctggatatttcatataaatggaatcataccatttgt-ggc-ctttgtgtctaggttatttcatgtggtatatatcagtacttta----tttttatggctg-aaaagattttattgtatgaatatataacattttgtttattcatttatctgttggtggacatttgggttggttttgccttttgacttttgtgaatagtgctgctaggaacatttagatacaaatatttgtttgaacacttgtttctagttcttttgattatacacctaggactggaa---ttacag---ggtcatatggta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164326391 307 - 169600520 ctttctctgtctatggatttgcatatcctggatatttcatataaatggaatcataccagttgt-ggc-ctttgtgtctgggttatttc---------atatcagtacttta----tttttattgctgaaaaagatttccttgtatgaatatataacattttgtttattcatttatctgttgatggacatttgggttggttttgccttttgacttttgtgaatagtgctgctaggaacatttatatacaaatacttgtttgaacacttgtttctagttcttttgattatacacctaggactggaa---ttacag---ggtcatatggta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165647355 307 - 171882078 ctttctctgtctatggatttgcatatcctggatatttcatataaatggaatcataccagttgt-ggc-ctttgtgtctgggttatttc---------atatcagtacttta----tttttattgctgaaaaagatttccttgtatgaatatataacattttgtttattcatttatctgttgatggacatttgggttggttttgccttttgacttttgtgaatagtgctgctaggaacatttatatacaaatacttgtttgaacacttgtttctagttcttttgattatacacctaggactggaa---ttacag---ggtcatatggta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       501770 313 +   2379783 ctttctctgtctatggatttgcatatcctggatatttcatataaatggaatcataccagttgt-ggc-ctttgtgtctgggttatttc---------atatcagtacttta----tttttattgctgaaaaagatttccttgtatgaatatataacattttgtttattcatttatctgttgatggacatttgggttggttttgccttttgacttttgtgaatagtgctgctaggaacatttatatacaaatacttgtttgaacacttgtttctagttcttttgattatacacctaggactggaatagttatattccagttatatggta
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       458907 305 +   4116138 ctttctctgtctatggatttgcatatcctggatatttcatataaatggaatcataccagttgt-ggc-ctttgtgtctgggttatttc---------atatcagtacttta----tttttattgctgaaaaagacttccttgtatgaatatataacattttgtttattcatttatctgttgatggacatttgggttggttttgccttttgac--ttgtgaatagtgctgctaggaacgtttatatacaaatacttgtttgaacacttgtttctagttcttttgattatacacctaggactggaa---ttacag---ggtcatatggta
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53891195 305 +  58131712 ctttctctgtctatggattcgcatatcctggatatttcatataaatggaatcataccagttgt-gac-ctttgtgtctgggttatttc---------atatcagtacttta----tttttattgctgaaaaagatttccttgtatgaatatataacattttgtttattcatttatctgttgatggacatttggattggttttgccttttgac--ttgtgaatagtgctgctaggagcatttatatacaaatacttgtttgaacacttgtttctagttcttttgattatacacttaggactggaa---ttacag---ggtcatatggta
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       511658 305 -   3636681 ctttctctgtctatggatttgcatatcctggatatttcatataaatggaatcataccagttgt-ggc-ctttgtgtctgggttatttc---------atatcagtacttta----tttttattgctgaaaaagacttccttgtatgaatatataacattttgtttattcgtttatctgttgatggacatttgggttggttttgccttttgac--ttgtgaatagtgctgctaggaacgtttatatacaaatacttgtttgaacacttgtttctagttcttttgattatacacctaggactggaa---ttacag---ggtcatatggta
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       490707 307 -   4457520 ctttctctgtctatggatttgcatatcctggatatttcatataaatggaatcataccagttgt-ggc-ctttgtgtctgggttatttc---------atatcagtacttta----tttttattgctgaaaaagatttccttgtatgaatatataacattttgtttattcatttatctgttgatggacatttgggttgattttgccttttgacttttgtggatagtgctgctaggaacatttatatacaaatacttgtttgaacacttgtttctagttcttttgattatacacctaggactggaa---ttacag---ggtcatatggta
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154522215 304 - 158406734 ctttctctgtctgtggttttgcatattctgaatatttgatataaatggaatcataccatttgt-ggc-ctttgtgtctgggctatttcattgggtttatattggtacttta----tttttatggctgaaaaagattttattgtatgaatatataacattttg--------tttatttgttgatgaacatttg----ggttttgccttttgacttttgtgaatagtgctgctaggaacatttatatacaaatatttgtttgaacacttgtttctagttcttttgattgtatatctaggactggaa---ttatag---ggtcatatggta
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             354350 310 -   2682657 ttttctctgtc--tggttttgcatatcctgaatatttcgtataaatggaatcatagcacttgt-ggc-ttttgtgtctgggttatttcatttggtatatattggtacttta----tttttatggctgaaaaagatttcattgtatgaatatataacattttgtttattcatttatttgttgatgaacacttg----ggttttgccttttgacttttgtgaatagtgctgctaggaacatttgtatacaaatatttgtttgaacacttgtttctagttattttgattatatacctaggactggaa---ttacag---agtcatatggta
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       378527 312 -   2086007 ttttctctgtctatggttttgcatatcctgaatatttcatataaatggaatcataccatttgt-ggc-ctttgtgtctgggttatttcatttggtatatgttggtacttta----tttttatggctgaaaaagatttcattgtatgaatatataacaatttgtttattcatttatttgttgatgaacatttg----ggctttgccttttgacttttgtgaatagtgctgctaggaacatttgtatacaaatatttgtttgaacacttgtttctggttcttttgattatatacctaggactggaa---ttacag---ggtcatatggta
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       441829 312 +   3831555 ttttctctgtctatggttttgcatatcctgaatatttcatataaatggaatcataccatttgt-ggc-ctttttgtctgggttatttcatttggtatatattggtacttta----tttttatggctgaagaagatttcattgtatgaatatataacattttgtttattcatttatttgttgatgaacatttg----ggttttgccttttgacttttgtgaatagtgctgctaggtacatttatatagaaatatttgtttgaacacttgtttctagttcttttgattatatacctaggactggaa---ttacag---ggtcatatggta
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13513838 302 +  16154928 ctttctctctctctggatttgcatattctggatatattatataaatgaaatcatacaatttgt-ggc-ctttgtgtctagcttatttcatttagtatatattggtac----------tttatagctgaaaaatatttcattgtataaatatacaacattttg--------tgtatctgtcaatggacatttgggttgtttctaccttttgccttttctaagtagtgctgctaggatcatatacatagaaatttttgtttgaataccagtttccagtttttttggttacatgcccaggagtggaa---ttgcag---ggtcatatgata
i proCoq1.NW_012148396v1    I 33 C 0
s mm10.chr7                  56139427 287 + 145441459 cgttctgcttcaatggatttacat-ttttgagtatttcatgtgagtgcagtcttgcaatttgtaggc-ttttatatttgagtt-------ttagtacatgacagtacttcatt-ctttttataactgaaaatg---ttattatttgcctatttgaca-------------tttatacactggtggatagatggatcgtctt--actatttactttactaagtagttttgttaggaatgtttgtatgtaaattc----ttgaatacctatttttagttcttttgtttataaa---aggagtagaa---tactga---ggtcatgtggta
i mm10.chr7                 C 0 I 334
s canFam3.chr3               60042834 307 -  91889043 ctttatc--tctgtggatttccttattctggttatttaatataaatgaaatc---caattttt-agctttttgtatctggcatatttcacttagcatgtgtcagtacttcattcctttttatggctaaaaaatattatattgtgtgaatatactacaatttattt-tcctttcatccatggttggacatttgacttgtatctgtcca-------ttgtgaatagtgctgctaggagcatttatgtacaagtttttgtttgatcacctatttctaattcttttg-ttctatatctaggagtggaa---gtgcag---ggtcatatggta
i canFam3.chr3              C 0 I 4
e micMur3.chr9              116297179 6178 + 116334831 I
e dasNov3.JH562051             429878 1635 +    563711 I
e otoGar3.GL873689             468148 969 +   3845361 I
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I

a score=461554.000000
s hg38.chr15_KI270851v1_alt    192893 47 +    263054 caactatgtgtaacttactgagaaactaccaaagttttccacagtgc
s panTro5.chr15              73805772 47 -  83230942 caactatgtgtaacttactgagaaactaccaaagttttccacagtgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74109618 47 -  99763055 taactatgtgtaacttactaagaaactaccaaagttttccacagtgc
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               71016940 47 + 121039945 caactatgtataacttactaagaaactaccaaacttttccacagtgc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164326698 47 - 169600520 caactatgtgtaacttactaagaaactaccaaacttttccacagtgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165647662 47 - 171882078 caactatgtgtaacttactaagaaactaccaaacttttccacagtgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       502083 47 +   2379783 caactatgtgtaacttactaagaaactaccaaacttttccacagtgt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       459212 47 +   4116138 caactatgtgtaacttactaagaaactaccaaacttttccacagtgt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53891500 47 +  58131712 caactatgtgtaacttactaagaaactaccaaacttttccacagtgt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       511963 47 -   3636681 caactatgtgtaacttactaagaaactaccaaacttttccacagtgt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       491014 47 -   4457520 cgactatgtgtaacttactaagaaactaccagacttttccacagtgt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154522519 47 - 158406734 caactgtgtgtaacttaagaagaaaccaccaaacttttccacagcac
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             354660 47 -   2682657 caactatgtgtaacttactaagaaactaccagacttttccacagcac
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       378839 47 -   2086007 caactatgtgtaacttactgagaaactaccagacttttccacagcac
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       442141 47 +   3831555 caactatgtgtaacttactaagaaactaccaaactcttccacagcac
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13514140 47 +  16154928 accctatgtgtaacttgctgagaaactaccaaacttttctgcagtgc
i proCoq1.NW_012148396v1    C 0 I 5147
s canFam3.chr3               60043145 37 -  91889043 ctacttttggttgct-------aaacccccagtctttgccatag---
i canFam3.chr3              I 4 C 0
e mm10.chr7                  56139714 334 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e dasNov3.JH562051             429878 1635 +    563711 I
e otoGar3.GL873689             468148 969 +   3845361 I
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I

a score=411750.000000
s hg38.chr15_KI270851v1_alt    192940 51 +    263054 catatcatttttacattcccatcaccagtgggcaggattccagggttccag
s panTro5.chr15              73805819 51 -  83230942 cgtatcatttttacattcccaccaccagtgggcaggattccagggttccag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74109665 51 -  99763055 cgtatcatttttacattcccaccaccagtgggcaggattccagggttccag
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               71016987 51 + 121039945 cgtatcatttttgtattcccaccaccagtggacaggattccagggttccag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164326745 50 - 169600520 ggtatca-ttttacattcccaccaccagtggacaggattccaaggttccag
i rheMac8.chr7              C 0 I 8
s macFas5.chr7              165647709 50 - 171882078 ggtatca-ttttacattcccaccaccagtggacaggatcccaaggttccag
i macFas5.chr7              C 0 I 8
s macNem1.NW_012011934v1       502130 50 +   2379783 ggtatca-ttttacattcccaccaccagtggacaggattccagggttccag
i macNem1.NW_012011934v1    C 0 I 8
s cerAty1.NW_012001462v1       459259 50 +   4116138 gatatca-ttttacattcccaccaccagtggacaggattccagggttccag
i cerAty1.NW_012001462v1    C 0 I 8
s chlSab2.chr26              53891547 50 +  58131712 ggtatca-ttttatattcccaccaccagtggacgggattccagggttccag
i chlSab2.chr26             C 0 I 8
s manLeu1.NW_012102332v1       512010 50 -   3636681 ggtatca-ttttacattcccaccaccagtggacagggttccagggttccag
i manLeu1.NW_012102332v1    C 0 I 8
s colAng1.NW_012115278v1       491061 50 -   4457520 gatatca-ttttacattccctccaccagtggacaggattccagggttccag
i colAng1.NW_012115278v1    C 0 I 4254
s calJac3.chr6              154522566 50 - 158406734 tgtatca-ctttacattcccactattagtggacagggttccagagtttcag
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             354707 50 -   2682657 tctatca-ctttacattcccaccagtagtgaacagggttccagagtttcag
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       378886 50 -   2086007 tgtatca-ctttacattcccactattagtggacagggttccagagtttccg
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       442188 50 +   3831555 tgtatca-ctttgcattcccaccattagtagacagggttccagagtttcag
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60043182 43 -  91889043 cattcca-ttttccattccccccagcaatggaagaggt-------ttccag
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56139714 334 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e otoGar3.GL873689             468148 969 +   3845361 I
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I

a score=932915.000000
s hg38.chr15_KI270851v1_alt    192991 145 +    263054 tttctctgcttccctgcc------aacactattttt----------------tgtgg-------------ttttctttttttttttg---------------gattaaggccatcctagcgggtgtgaagt-ggtatctcattgtgattttggtttgcatttcactaatgatgaatgac-attgagcttctttacat
s panTro5.chr15              73805870 152 -  83230942 tttctctgcttccctgcc------aacactattttt----------------tgtgg------tttttttttttctttttttttttg---------------gatgaaggccatcgtagtgggtgtgaagt-ggtatctcattgtgattttgatttgcatttcactaatgatgaatgac-attgagcttctttgcat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74109716 151 -  99763055 tttctctgcttccctgcc------aacactattttt----------------tgttg-------gttttttttttcttttttttttg---------------gatgaaggccatcgtagtgggtgtgaagt-ggtatctcattgtgattttgatttgcatttcactaatgatgaatgac-attgagcttctttgcat
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               71017038 158 + 121039945 tttatctacttccctgcc------aacactattttt----------------tgtgtttttttttcttttttttctttttgttttca---------------gattaaggccatcctagtgggtgtgaagt-ggtatctcattgtgattttgatttgcatttcactaatgatgaatgac-attgagcttctttacat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164326803 155 - 169600520 tttctctacttccctgccaacacaaacactattttt----------------tgtgg-------gatttctttttttttttttt------------------gattaagaccatcctagtgggtgtgaagt-ggtatctcattgtgattttgattcgcatttcactgatgatgaatgatgattgaacttctttacat
i rheMac8.chr7              I 8 C 0
s macFas5.chr7              165647767 155 - 171882078 tttctctacttccctgccaacacaaacactattttt----------------tgtgg-------gatttctttttttttttttt------------------gattaagaccatcctagtgggtgtgaagt-ggtatctcattgtgattttgattcgcatttcactgatgatgaatgatgattgaacttctttacat
i macFas5.chr7              I 8 C 0
s macNem1.NW_012011934v1       502188 155 +   2379783 tttctctacttccctgccaacacaaacactattttt----------------tgtgg-------gatttctttttttttttttt------------------gattaagaccatcctagtgggtgtgaagt-ggtatctcattgtgattttgattcgcatttcactgatgatgaatgatgattgaacttctttacat
i macNem1.NW_012011934v1    I 8 C 0
s cerAty1.NW_012001462v1       459317 156 +   4116138 tttctctacttccctgccaacacaaacactattttt----------------tgtgg-------gatttcttttttttttttttg-----------------gattaagaccatcctagtgggtgtgaagt-ggtatctcattgtgattttgatttgcatttcactgatgatgaatgatgattgagcttctttacat
i cerAty1.NW_012001462v1    I 8 C 0
s chlSab2.chr26              53891605 162 +  58131712 tttctctacttccctgccaacacaaacactattttt----------------tgtgg-------gatttcttttttttttttttttt-----------tttggattaagaccatcctagtgggtgtgaagt-ggtatctcattgtgattttgatttgcatttcactgataatgaatgatgattgagcttctttacat
i chlSab2.chr26             I 8 C 0
s manLeu1.NW_012102332v1       512068 158 -   3636681 tttctctacttccctgccaacacaaacactattttt----------------tgtgg-------gatttcttttttttttttttttt---------------gattaagaccatcctagtgggtgtgaagt-ggtatctcattgtgattttgattcgcatttcactgatgatgaatgatgattgaacttctttacat
i manLeu1.NW_012102332v1    I 8 C 0
s calJac3.chr6              154522616 155 - 158406734 cttctctacttc-ctgcc------aacactattttgtgtgtgtgtgtgtgtgtgtgt-------gtgtgtgtgtgtttttttt-------------------aattaaggccatcctagtgggtgtgcagt-ggtatctcattgtgattttgatttgcatttcactaatgat--------attgagcttctttacat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             354757 131 -   2682657 tttctgtacttagctgcc------aacac-----------------------tgtgt-------gtgtgtgtgtgt----------------------------ttaaggccatcctagtgggtgtgaagt-ggtatctcattgtgattttgatttgcatttcactaatgataaatgac-atcgagctgctttacat
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       378936 168 -   2086007 tttctctacttccctgcc------aacactattttgtgtgtgtgtgtgtgtgtgtgt-------gtgtgtgtgtgtgtgtgttttaa---------------aattaaggccatcctagtgggtgcgaagtgggtatctcattgtgattttgatttgcatttcactaatgatgaatgac-attgagcttctttacat
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       442238 152 +   3831555 tttctctacttccctgcc------aacaccat------------tgtgtgtgtgtgt-------gtgtgtgtgtgtttgttttt------------------aattaaggccaccctagtgggtgtgaagt-ggtatctcattgtgattttgatttgcatttcactaatgatgaatgac-attgagcttctttacat
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60043225 145 -  91889043 tttttctacatcctcacc------aacaccagttat---------------------------------------tttccttttgagaggtggggaggcaggaattgagtccatcccagttgatgtgaagt-ggtatctcattgtgg-tttgatttacattttgctaat-ataa--ggc-cttaaacatctttata-
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56139714 334 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e otoGar3.GL873689             468148 969 +   3845361 I
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I

a score=5647448.000000
s hg38.chr15_KI270851v1_alt    193136 778 +    263054 gtttgtgcttgttggccatttgtatatcttctttggagaagtgtct-------attcaagtccctttctctttattt----tttatttta-t--ttt-----tttgagacggagtctcactctgtcgcccaag-----ctggagcgca----gtggcacgatc--------------tcggctca------------ctgcaacctccacctcccgggtt------------------------caagcacttct---------------------------------tgtgcctcagcctcccaagt------agctgg--gattacagtcacacacga----------------ccacacctg---------------gctaacttttgtatttttagtagagatgggatttcgc----------catgttggc------caggctggtctgg--aactcctgacctcaggtgatct-----------------------gcctgccctg----------------------------------gcctcccagagtgctgg------------------gataacaggcgtgagccactgcgcccagccccttt-ctcctttttaaatagggttat--ttgtcgtc-atcttg---tt--------------gt----accaa-taaatgcactatataagtgtatcaaaccttt-aaagaagaattaacaccagtcctcagactcttta-aaaagttcgtgtatactagaccttcacagatctgtagacctttatcagg--------tatatcatttgagggtattttctcctgttctctggattgta-ttccct------tagat--agagaagttttttattttgatgaagttcaatttatctgtttctc-ttttgtcgtctatgcttttgatatcatatccaaaaagccatttccaaacacaaggttgatgaagatta-tcctcatgttttc-ttctg-taagttttatagtttcagctcttatatttagatctttggtccatttttagg----taatttcttttaca
s panTro5.chr15              73806022 779 -  83230942 gtttatgcttgttggccatttgtatatcttctttggagaagtgtct-------attcaagtccctttctctttattg----tttattttact--ttt-----tttgagacggagtctcactccgtcgcctagg-----ctggagcaca----gtggcacgatc--------------tcagctca------------ctgcaacctccgcctcccgggtt------------------------caagcgcttct---------------------------------catgcctcagcctcctgagt------agctgg--gattacagtcacacacca----------------ccacacctg---------------gctaatttttgtatttttagtagagatggggtttcgc----------catgttggc------caggctggtctgg--aactcctgacctcaggtgatct-----------------------gcctgccttg----------------------------------gcctcccaaagtgctgg------------------gataacagacgtgagccactgcgcccagcccgttt-ctcctttttaaatagggttat--tggtcgtc-atcttg---tt--------------gt----accaa-taaatgcactatataagtgtaccaaaccttt-aaagaagaattaacaccagtcctcagactcttta-aaaatttcgtgtatactagaccttcacagatctgtagacctttatcagg--------tatatcatttgagggtattttctcctgttctctggattgta-tttcct------tagat--agagaagttttttattttgatgaagttcaatttgtctgtttctc-ttttgtcgtctatgcttttgatatcgtatccaaaaagccatttccaaatacaaggttgatgaagatta-tcctcatgttttc-ttctg-taagttttatagttgtagctcttatatttagatctttggtccatttttagg----taatttcttttaca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74109867 780 -  99763055 gtttatgcttgttggccatttgtatatcttctttggagacgtgtct-------attcaagtccctttctctttattg----tttattttact--ttt-----tttgagacggagtctcactccgtcgcctagg-----ctggagcaca----gtggcacgatc--------------tcagctca------------ctgcaacctccgcctcccgggtt------------------------caagcgcttct---------------------------------catgcctcagcctcctgagt------agctgg--gattacagtcacacacca----------------ccacacctg---------------gctaatttttgtatttttagtagagatggggtttagc----------catgttggc------caggctggtctgg--aactcctgacctcaggtgatct-----------------------acctgccttg----------------------------------gcctcccaaagtgctgg------------------gataacagacgtgagccactgcgcccagcccgttt-ctcctttttaaatagggttat--tcatcgtc-atcttg---tt--------------gt----accaa-taaatgcactatataagtgtaccaaaccttt-aaagaagaattaacaccagtcctcagactcttta-aaaatttcgtgtatactagaccttcacagatctgtagacctttatcagg--------tatataatttgagggtattttctcctgttctctggattgta-tttcct------ttgat--agagaagttttttattttgatgaagttcaatttatctgtttctctttttgtcgtctatgcttttgatatcgtatccaaaaagccatttccaaatacaaggttgatgaagatta-tcctcatgttttc-ttctg-taagttttattgtttcagctcttgtatttagagctttggtccatttttagg----taatttcttttaca
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               71017196 785 + 121039945 gtttgtgcttgttggccatttgtatatcttctttggagaaatgtctattcaagattcaagtccctttctctttattt----tttattttatt--ttt-----tttgagacggagtctcactcagtcgcctagg-----ctggagcaca----gtggcaccatc--------------tcggctca------------ccgcaacctccgcctcccgggtt------------------------caagcgcttct---------------------------------catgcctcagtctcccgagt------agctgg--gattacagtcacacacca----------------ccacacctg---------------gctaatttttgtatttttagtagagatgtggtttcgc----------catgttggc------taggttggtctgg--aactcctgacctcaggtgatct-----------------------gcctgccttg----------------------------------gcctcccaaagtgctgg------------------gataacaggcattagccactgcgcccagccccttt-ctcctttttcagtagggttat--ttgtcgtc-atcttgttctt--------------gt----accaa-taaatgca----ataagcgtaccaaacactt-aaagaagaattaacaccagtcctcagactcttta-aaaattttgtgcatactagaccttcacagatctgtagacctttatagat--------aatatcatttgagggtattttctcctgctctctggattgta-tttcct------ttgat--agagaagttttttattttgatgaagttcagtttatctgtttctc-ttttgtcgtctatgcttttgatatcgtatccaaaaagccatttccaaatacaaggttgatgaagatta-tcctcatgttttc-ttctg-taagttttatagttttagctcttatatttagatctttggtccatttttagg----taatttcttttaca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164326958 778 - 169600520 gtttgcgcttgttggccatttgtatatcttctttggagaagtgtct-------attcaagtccctttctccttattt----tttatttta-t--ttt-----tttgagacagagtctcactctgtcgcccagg-----ctggagtgca----gtggcacaatc--------------ttggctca------------ctgcaacctccacctcccgggtt------------------------caagtgattct---------------------------------catgcctcagccttccaagt------agctgg--gattatagtcacacacca----------------ccacacctg---------------gctaatttttgtatttttagtagagatggggttttgc----------catgttggc------caggctggtctcg--aactcctgacctcgggtgatct-----------------------gcccacctcg----------------------------------gcctcccaaagtgctgg------------------gattacaggcctgagctactctacccagccccttt-gtcctttttaaatagggttgt--ttgtcatc-tttttg---tt--------------gt----atcaa-taaatgcactatataagtgtaccaaacaaat-aaagaagaattaacaccactcctcagactcttta-aaaatttcgtgtgtcctagaccttcacagatctgtagacctttatcaga--------tatataatttgaggatattttctcctgttctctggattgta-tttcct------ttgat--acagaagttttttattttgatgaagttcagtttatctgtttttc-ttttatcatctgtgcttttgatatcatatccaaaaagccatttccagatacaagattgatgaagatta-tcctcatgttttc-ttctg-taagttttatagttttagctcttacatttagatctttggtccatttttagg----taattttttttaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165647922 778 - 171882078 gtttgcgcttgttggccatttgtatatcttctttggagaagtgtct-------attcaagtccctttctccttattt----tttatttta-t--ttt-----tttgagacagagtctcactctgtcgcccagg-----ctggagtgca----gtggcacaatc--------------ttggctca------------ctgcaacctccacctcccgggtt------------------------caagtgattct---------------------------------catgcctcagccttccaagt------agctgg--gattatagtcacacacca----------------ccacacctg---------------gctaatttttgtatttttagtagagatggggttttgc----------catgttggc------caggctggtctcg--aactcctgacctcgggtgatct-----------------------gcccacctcg----------------------------------gcctcccaaagtgctgg------------------gattacaggcctgagctactgcacccagccccttt-gtcctttttaaatagggttgt--ttgtcatc-tttttg---tt--------------gt----ATCAA-TAAATGCACTATATAAGTGTACCAAACAAAT-AAAGAAGAATTAACACCACTCCTCAGACTCTTTA-AAAATTTCGTGTGTCCTAGACCTTCACAGATCTGTagacctttatcaga--------tatataatttgaggatattttctcctgttctctggattgta-tttcct------ttgat--acagaagttttttattttgatgaagttcagtttatctgtttttc-ttttatcatctgtgcttttgatatcatatccaaaaagccatttccagatacaagattgatgaagatta-tcctcatgttttc-ttctg-taagttttatagttttagctcttacatttagatctttggtccatttttagg----taattttttttaca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       502343 778 +   2379783 gtttgcgcttgttggccatttgtatatcttctttggagaagtgtct-------gttcaagtccctttctccttattt----tttatttta-t--ttt-----tttgagacagagtctcactctgtcgcccagg-----ctggagtgca----gtggcacaatc--------------ttggctca------------ctgcaacctccacctcccgggtt------------------------caagtgattct---------------------------------catgcctcagccttccaagt------agctgg--gattatagtcacacacca----------------ccacacctg---------------gctaatttttgtatttttagtagagatggggttttgc----------catgttggc------caggctggtctcg--aactcctgacctcgggtgatct-----------------------gcccacctcg----------------------------------gcctcccaaagtgctgg------------------gattacaggcctgagctactgcacccagccccttt-gtcctttttaaatagggttgt--ttgtcatc-tttttg---tt--------------gt----atcaa-taaatgcactatataagtgtaccaaacaaat-aaagaagaattaacaccactcctcagactcttta-aaaatttcgtgtgtcctagaccttcacagatctgtagacctttatcaga--------tatataatttgaggatattttctcctgttctctggattgta-tttcct------ttgat--acagaagttttttattttgatgaagttcagtttatctgtttttc-ttttatcatctgtgcttttgatatcatatccaaaaagccatttccagatacaagattgatgaagatta-tcctcatgttttc-ttctg-taagttttatagttttagctcttatatttagatctttggtccatttttagg----taattttttttaca
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       459473 778 +   4116138 gtttgcgcttgttggccatttgtatatcttctttggagaagtgtct-------attcaagtccctttctccttattt----tttatttta-t--ttt-----tttgagacagagtgtcactctgtcgcccagg-----ctggagtgca----gtggcacaatc--------------ttggctca------------ctgcaacctccacctcccgggtt------------------------caagtgattct---------------------------------catgcctcagcctcccaagt------agctgg--gattatagtcacacacca----------------ccacacctg---------------gctaatttttgtatttttagtagagatggggtttcgc----------catgttggc------caggctggtctcg--aactcctgacctcgggtcatct-----------------------gcccacctaa----------------------------------gcctcccaaagtgctgg------------------gattacaggcctgagctactgcgcccagccccttt-gtcctttttaaatagggttgt--ttgtcatc-tttttg---tt--------------gt----atcaa-taaatgcactatataagtgtaccaaacaaat-aaagaagaattaacaccagtcctcagactcttta-aaaatttcgtgtatcctagaccttcacagatctgtagacctttatcaga--------tatataatttgaggatattttctcctgttctctgtattgta-tttcct------ttgat--acagaagttttttattttgatgaagttcagtttatctgtttttc-ttttatcatctgtgcttttgatatcatatccaaaaagccatttccaaatacaatattgatgaagatta-tcctcatgttttc-ttctg-taagttttatagttttagctcttatatttagatctttggtccatttttagg----taattttttttaca
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53891767 778 +  58131712 gtttgcgcttgttggccatttgtatatcttctttggagaagtgtct-------attcaagtccctttctccttattt----tttatttta-t--ttt-----tttgagacagagtctcactctgtcgcccagg-----ctggagtgca----gtggcacaatc--------------ttggctca------------ctgcaacctccacctcccgggtt------------------------caagtgattct---------------------------------catgcctcagcctcccaagt------agctgg--gattatagtcacacacca----------------ccacacctg---------------gctaatttttatatttttagtagagatggggttttgc----------cacgttggc------caggctggtctcg--aactcctgacctcgggtgatct-----------------------gcccgcctcg----------------------------------gcctcccaaagtgctgg------------------gattacaggcctgagctgctgcacccagccccttt-gtcctttttaaatagggttgt--ttgtcatc-tttttg---tt--------------gt----ATCAA-TAAATGCACTATATAAGTGTACCAAACAAAT-AAAGAAGAATTAACACCAGTCCTCAGACTCTTTA-AAAATTTCGTGTATCCTAGACCTTCACAGATCTGTagacctttatcaga--------tatataatttgaggatattttcttctgttctctggattata-tttcct------ttgat--acagaagttttttattttgatgaagttcagtttatctgtttttc-ttttatcatctgtgcttttgatatcatatccaaaaagccatttccaaatacaagattgatgaagatta-tcctcatgttttc-ttctg-taagttttatagttttagctcttatatttagatcgttggtccatttttagg----taattttttttaca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       512226 778 -   3636681 gtttgcgcttgttggccatttgtatatcttctttggagaagtgtct-------attcaagtccctttctccttattt----tttatttta-t--ttt-----tttgagacagagtctcactctgtcgcccagg-----ctggagtgca----gtggcacaatc--------------ttggctca------------ctgcaacctccacctcccgggtt------------------------caagtgattct---------------------------------catgcctcagcctcccaagt------agctgg--gattatagtcacacacca----------------ccacacctg---------------gctaatttttgtatttttagtagagatggggtttcgc----------catgttggc------caggctggtctca--aactcctgacctcgggtgatct-----------------------gcccgcctca----------------------------------gcctcccaaagtgctga------------------gattacaggcctgagctactgcgcccagccccttt-gtcctttttaaatagggtggt--ttgtcatc-ttttta---tt--------------gt----atcaa-taaatgcactatataagtgtaccaaacaaat-aaagaagaattaacaccagtcctcagactcttta-aaaattttgtgtatcctagaccttcacagatctgtagacctttatcaga--------tatataatttgaggatattttctcctgttctctggattgta-tttcct------ttgat--acagaagttttttattttgatgaagttcagtttatctgtttttc-ttttatcatctgtgcttttgatatcatatccaaaaagccatttccaaatacaagattgatgaagatta-tcctcatgttttc-ttctg-taagttttatagttttagctcttatatttagatctttggtccatttttagg----taattttttttaca
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154522771 780 - 158406734 gtgtgtgctttttggccatttgtatatcttctttggagaagtgtct-------attcaagtccctttctccttttat----tttatttat-t--ttttaatgttacagatggaatcttactc--ttgctcagg-----ctggagtgca----gtggcacggtc--------------tcggctca------------ttgcaacccctgcctcctgggtt------------------------caagtgattct---------------------------------cgtgcctcagcttcctgagt------agctgg--gattacagtcac---------------------------cctg---------------gctaatttttgta-ttttagtagtgatggggttttgc----------catgttggc------caggctagtcttg--aactcctgacatcaggtggtct-----------------------gcatgcctcg----------------------------------gcctcccaaagtactgg------------------gatagcaggcgtgatccagtgcgcccagccccttt-ctcctttttaagtagggttgt--ttgttgtc-tttttg---tt--------------gttggcaccaa-tagatgcactatataagtataccagacattt-aaagaagaatt-acaccagttctcaaactcttta-aaaatttcgtgtgttctagaccttcacagatctgtagacctttatcagaagctactttatataattagaggatattttctcctgttctctggattgta-tatcc-------ttgatacagagaagttttctattttgaagaagttcgatttgtctg-ttttc-ttttgttgtctgtgtttttgatatcatctccaaaaagccatttccaaatacaaggttgacgaagattc-tccttatgttttc-ttctg-taagttttatagttttagctctcatatttagatctttggtctctgtttagg----taattttttttaca
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             354888 794 -   2682657 gtgtgtgtttcttggccattcgtatctcttctttggagaagtgtct-------gttcaagtccctttctccttttattttatttatttat-t--ttttaatgttacagatggaatcttactctgttgctcagg-----ctggagtgca----atggcgcggtc--------------tcggctca------------ctgcaacctctgtctcctgggtt------------------------caggtgattct---------------------------------cgtgcctcagcttcctgagt------agctgg--gattacagtcacatacca----------------ccacacctg---------------gctaatttttgta-ttctggtagagatgaggttttgc----------catgttggc------caggctagtcttg--aactcctgacattaggtggtct-----------------------gcctgcctcg----------------------------------gcctcccaaagtactgg------------------gataacaggcgtgagccaccgcgcccagccccttt-ctcctttctaagtggga------ttgtcgtc--ttttg---tt--------------gttggcaccaa-taggtgcactatataaatataccaaactttt-aaagaagaattaacaccagtgctcaaactcttta-aaaaTTTCGTGTATACTAGACCTTCACAGACCTGTagacctttatcagaggcttcttt-tataattagagggtattttctcctgttctccagattgta-tttcct------ttgatacagagaagttttctattttgaggaacttcagttggtctgtttttc-ttttgttgtctgtgtttttgatatcatatccgaaaagccatttccaaatacaaggttgatgcagatta-tccttgcgttttc-ttctg-taagttttatagttttagctctcatatttagatctttggtctatgtttagg----taattttttttaca
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       379104 786 -   2086007 gtgtgtgcttgttggccatttgtatatcttctttggtgaagtgtct-------attcaagtccctttctcctta-------tttatttAT-T--TATTAATGTTACagatggaatcttattctgttgctcagg-----ctggagtgca----gtggcacagtc--------------tcggctca------------ttgcaacctctgcctcctaggtt------------------------caagtgattct---------------------------------catgcctcagcttcctgagt------agctgg--gattacagttacatacca----------------ccacacctg---------------gctaatttttgta-ttttagtagagatggggttttgc----------catgttggc------caggctagtcttg--aactcctgacattaggtggtct-----------------------gcctgctttg----------------------------------gcctcccaaagtactgg------------------gataacaggtgtgagccactgcccccagccTCTTT-CTCCTTTTTAAGTGGGA------TTGTCGTC-TTTTTG---TT--------------GTTGGCACCAA-TAGGTGCACTATATAAGAAtaccaaatattt-aaagaagaattaacaccagtcctcaaactcttta-aaaaCTTCGTGTATACTAGACCTTCACAGATCTGTagacctttatcagaggctactttatgtaattagaggatattttctcctgttctctggattgta-tttcct------ttgatccagagacgttttctgttttgaagaagctcaatttgt----ctttc-ttttgttgtctgtgtttttgatatcatatccaaaaagccatttccaaatacaaggttgatgaagatta-tccttatgttttc-ttctgttaagctttctagttttagctctcgtatttagatctttggtctgtgttgagg----taattttttttatg
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       442390 796 +   3831555 gtgtgtgcttgttggccatttgtatatcttctttggggaagtgtct-------attcaagtcccattctccttttattttatttatttat-t-gttttaatgttacagatggaatcttactctgttgctcagg-----ctggagtgca----gtggcatggtc--------------tcggctca------------ttgcaacctctgcctcctgggtt------------------------caagtgattct---------------------------------cgtgcctcggcttcccgagt------agctgg--gattatagtcacatacca----------------ccacaccca---------------gctaatttttgta-ttttaatagagatggggttttgc----------catgttggc------caggctagtcttg--aactcctgacattaggtggtct-----------------------gcctgcctcg----------------------------------gcctcccaaagtactgg------------------gataacaggcgtgagccactgcgcccagccccttt-ctcctttttaagtagga------ttgtcgtcttttttg---tt--------------gttgacaccaa-tagatgcactatgtaagtataccgaacattt-aaaaaagaattaacaccagtcctcaaactcttta-aaaatttcgtgtatactagaccttcacagatctgtagacctttatcagaggctactttgtataattagaggatattttcttctgttctccggattgta-tttcct------ttgatacagagaagttttctattttgaagaagtttgatttgtctgtttttc-ttttgttgtctgtgtttttgatatcatatccaaaaag--gtttccaaatacaaggttgatgaagatta-tccttatgttttc-ttctg-taagtttattagttttagctctcatatctagatctttggtctatgtttagg----taatttttttaaca
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56140048 992 + 145441459 gtttttggtttttgg----ttgtttttggtttttgg--------tt-------gtttttggtttttggtttttggtt----tttggtttt-tggttt-----ttcgagacagggtttctctttatagctctggctgtcctggagctcactttgtagaccaggc--------------tggcctcgaactcagaaatccgcctgcctctgcctcccgagtTGTttttgttttcttaaagatactctatgtagctctgcttggcctgaaagtctatgctcacagagaatccttgcctctgcctctagagtgtaggcagtaggcctacTATAGATAAACATTAATGTCTTACTTCTGCTTCACTCCTGCCCAGGAATATGGGTGCTCCATTTTGAATGATTAGTGCAGC--AGACTCTGCCACTGAGTTGCACACTGGCTTCCCACATGCAACTCTCAGCAtctctggacctttgacagttttattactgtggtttggggattaaggccatctcaatgaatatgaagtgttctccagtatttttggtttgccttccaacttaatgacaaatgactttagggtctgtttacatctttgcagaaatgtcctttgcccactt-tttttttaaaaaatgagttgcaatctttgtt-tttttg---ttactggtatataggagt----actAGTTAAAAGAATTACATAA-TGAAGCAAACATTTAAAAGAAGAGTT---ACCAATTCTTAAGCTCTTCACAAAATATGTTGGGTGATAGACCCTTGCACATCTGTAGACCTTTAACAGATGT-----TCTGTGATTTGAGGATAACTT-TCCTGTCTTGTGAATTGTATTTttct------ttgatgcacaaaagttgtaacttttgatg--gtctgtctagtttcctctcc-tttggctgtctgtgcttctg---tcattgtcacgaagccagtgccaag-actaaggtggtgaaagtta---cctattactgc-ttctg-taggctttattgtttcagctcctatacgtaggtcttttgtacattttTACAAACtttacttattttaca
i mm10.chr7                 I 334 I 4692
s canFam3.chr3               60043370 579 -  91889043 ---cgtgcttgttagccatttg----tctttcttggagaacttttt-------ttt--------ttttttttaagat----tttatttatct--att-----catgacacagag----------------agg-----cagagaggca----aagacacaggcggcagagggagaagcaggctcc------------atgcaa------------gaagc------------------------ccagtg--------------------------------------tgggactcaa--tcccggga------ctccag--ga--------------------------------tcacacctg---------------g----------------------------------gc------------------t------gaaggtggcgcta--aaccgctg-------------------------------------ggccaccagg----------------------------------gctgccc-----tcttg------------------gagaac---------------tattcagaacatttgctcatttttaaattaggttat--ttgt-gtt-attgag---tt--------------gt----aggag-tg-----------------------------------------------------------cttta-tatattctggatac--------------------tagaccattatcaat--------taaatgatttgaagatacttcctccccttctatgggttgta-ttttgttttacattgatgcacagaagccttaaatattgatgaagtccagcttatctgtttttc-ttttgttgcttgtgcttttgatgttatgttcaagaaaccattgccaaacccagg--tcatgaggattactcactgtgttttcttttta-aaaattttatagtcttagttcttatatttaggtctttagtctatttctagg----caatttttaata--
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e otoGar3.GL873689             468148 969 +   3845361 I
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I

a score=1834244.000000
s hg38.chr15_KI270851v1_alt    193914 237 +    263054 cagtgtgaggtaagagtccagcctttttcttttgttgatctgattgtttcaataccacttgttgaggactgttctttccctgaagttctgggtacccttggcaaaaatcagttggctgtggatatttaggtttatttctggactctcaattacattatcacattctatatgttgataattgtgcaggtaccgccctgttttgaacattgtagttttgtact--gttttaaaattgagaa
s panTro5.chr15              73806801 237 -  83230942 cagtgtgaggtaagagtccagcctttttcttttgttgatctgattgtttcaataccacttgttgaggactgttctttccctgaagttctgggtacccttggcaaaaatcagttggctgtggatatttaggtttatttctggactctcaattacattatcacattctatatgttgataattgtgcaggtaccgccctgttttgaacattgtagttttgtact--gttttaaaattgagaa
i panTro5.chr15             C 0 N 0
s panPan2.chr15              74110647 236 -  99763055 cagtgtgaggtaagagtccaacctgttt-ttttgatgatctgattgtttcaataccacttgttgaggactgttctttccctgaagttctgggtacccttggcaaaaatcagttggctgtggatatttaggtttatttctggactctcaattacattatcacattctatatgttgataattgtgcaggtaccgccctgttttgaacattgtagttttgtact--gttttaaaattgagaa
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               71017981 237 + 121039945 cagtgtgaggtaagagtccagcctttctcttttgatgatctgattgtttcaatactgcttgttgaggactgttctttccctgaagttctcggtacccttggcaaaaatcagttggctgtagatatttaggtttatttctggactctcaattacatgatcacattctatatgttgataattatgcgggtactacactgttttgaacattgtagttttgtact--gttttaaaattgagta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164327736 236 - 169600520 ccgtgtgaggtaagagtctaacctttttcttttgattatctgattgtttcaataccacttgttgaggactgttc-ttccctgaagttctcagtacccttggcaaaaatcagttggctgtaggtatttagatttacttctggactctcaattacattatcacattctatatgtcaataattatgtgggtaccacactgttttgaacatcgtagttttgtact--gttttagcattgagaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165648700 236 - 171882078 ccgtgtgaggtaagagtctaacctttttcttttgattatctgattgtttcaataccacttgttgaggactgttc-ttccctgaagttctcagtacccttggcaaaaatcagttggctgtaggtatttagatttacttctggactctcaattacattatcacattctatatgtcgataattatgtgggtaccacactgttttgaacatcgtagttttgtact--gttttagcattgagaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       503121 236 +   2379783 ccgtgtgaggtaagagtctaacctttttcttttgattatctgattgtttcaataccacttgttgaggactgttc-ttccctgaagttctcagtacccttggcaaaaatcagttggctgtaggtatttagatttacttctggactctcaattacattatcacattctatatgtcgataattatgtgggtaccacactgttttgaacatcgtagttttgtact--gttttagcattgagaa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       460251 236 +   4116138 ccgtgtgaggtaagagtctaacctttttcttttgattatctgattgtttcaataccacttgttgaggactgttc-ttccctgaagttctcagtacccttggcaaaaatcagttggctgtaggtatttagatttacttctggactctcaattacattatcacattctatatgtcgataattatgtgggcaccacactgttttgaacatcgtagttttgtact--gttttagcattgagaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53892545 236 +  58131712 ccgtgtgaggtaagagtctaatctttttcttttgattatctgattgtttcaataccacttgttgaggactgttc-ttccctgaagttctcggtacacttggcaaaaatcagttggctgtaggtatttagatttacttctggactctcaattacattatcacattctatatgtcgataattatgtgggtaccacactgttttgaacatcgtagtttcgtact--gttttagcattgagaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       513004 236 -   3636681 ctgtgtgaggtaagagtctaacctttttcttttgattatctgattgtttcaataccacttgttgaggactgttc-ttccctgaagttctcagtacccttggcaaaaatcagttggctgtaggtatttagatttacttctggactctcaattacattatcacattctatatgtcgataattatgtgggtaccacactgttttgaacatcgtagttttgtact--gttttagcattgagaa
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154523551 237 - 158406734 cagtgtgaggtaagaattcaacctttttcttttgattatctgattgtttcaataccatttgttgaagactgttctttccctgaaggtcttagtacccttggcaaaagtcagttggctggagagacttaggtttatttctggactctcaattacattctcatattctatgtgtctataattatgtcagttccacactgttttgaacattatagttttgtact--gctttaaaattgagaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             355682 237 -   2682657 cagtgtgaggtaagagtccaacctttttcttttgattatctgattgtttcagtaccatttgttgaagaccgttctttccctgaaggtcttagtacccttggcaaaagtcagttggctggagatccttaggtttatttctggactctcaattacattctcatattctgtatgtctataattatgtgagtaccacactgtttcgaacattgtagatttgtact--gttttaaaattgagaa
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       379890 237 -   2086007 cagtgtgaggtaagagtccaacctttttcttttgattatctgattgtttcaataccatttgttgaagactgttctttccctgaaggtcttagtacccctggcaaaagtcagttggctggagattcttaggtttatttctggactctcaattacattctcatattctatatgtctataattatgtgagtatcacagtgtttcgaacattgtagatttgtact--gtttccagattgagaa
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       443186 237 +   3831555 caatgtgaggtaagagtgcagcctttttcttttgattatctgattgtttcaataccatttgttgaagactgttctttccctgaaggtcttagtacccttggcaacagtcagttggctggagagactcaggtttatttctggactctcaattacattctcatattgtatatgtctgtaattatgtgagtaccacactgtttcgaacattgtagttttgtact--gttttaaaattgagaa
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60043949 226 -  91889043 tggtgtgaggtaaggactccttttatttgttttggttatctagtcgtcctagtaccatttgttgaaaagactttttttccccaaggtcttggcccccttgtcaaaaatgatttgattataaatattttggtttatttctagactct-------atcttgttggtctgtatgtc----attatgccagtaccacattgttgtgaacac--tagctttgtggtaagttttgatatcaaaaa
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e otoGar3.GL873689             468148 969 +   3845361 I
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I

a score=2344834.000000
s hg38.chr15_KI270851v1_alt    194151 306 +    263054 gtgtg----------------ttttctttctcaagatgattttggctactttgggtcccttgcattttcacatgaacttcaaggctggcttttccatatctgcaaaaaaaga-ccattgggatttttgctaggg-----attgaatctgtagattgttttggg-aaatagtgccattttaac-aatgttaa--catccattctctgaatgtggaatgtctttccatttatttctgtcctctttaatttctttcagcaatattttattgttttacagttatcagggtaataatggcctcatagaatgaactaggtagtgttcccatatattct
s panTro5.chr15               9581269 303 +  83230942 GTGtg----------------ttttctttctcaagatgattttggctactttgggtcccttgcattttcacatgaacttcaaggctggcttttccatatctgcaaaaaaaga-ccattgggatttttgctaggg-----aatgaatctgtagattgttttggg-gaatagtgccatcttaac-aatgttaa--catccattctctgaatgtggaatgtctttccagttatttctgtcctctttaatttctttcagcaatattttatt---ttacagttatcagggtaataatggcctcacagaatgaactaggtagtgttcccatatattct
i panTro5.chr15             N 0 C 0
s panPan2.chr15              74110883 305 -  99763055 gtgtg----------------ttttctttctcaagatgattttggctactttgggtcccttgcattttcatatgaacttcaaggctggcttttccatatctgc-aaaaaaga-ccattgggatttttgctaggg-----attgaatctgtagattgttttggg-gaatagtgccattttaac-aatgttaa--catccattctctgaatgtggaatgtctttccatttatttctgtcctctttaatttctttcagcagtattttattgttttacagttatcagggtaatagtggcctcatagaatgaactacgtagtgttcccatatattct
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               71018218 305 + 121039945 gtgtg----------------ttttctttctcaagattattttgtctactttgggtcccttgcattttcatatgaacttcaaggctggcttttccatatctgc-aaaaaaga-cctttgggatttttgctaggg-----attaaatctgtagattgttttggg-gaatagtgccatcttaac-aatgttaa--catccgttctctgaatgtggaatgtctttctatttatttctgtcctctttaatttctttcagcagtattttattgttttacagttatcagggtaatagtggcctcatagaatgaactaggtagtgttcccatatattct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164327972 305 - 169600520 gtgtg----------------ttttctttctcaagattattttggcttctttgggtcccttgcattttcatatgaacatcaaggctggcttttccatatctgc-aaaaaaga-ccattgggatttttgctaggg-----attgaatctgtagattgttttggg-gaatagtgccatcttagc-aatgttaa--catccattctctgaatgtggaatgtctttccatttatttctttcctctttaatttctttcagcaatattttattgttttacagttatcagggtaataatggcctcatagaatgaactaggtagtgtacccatgtattct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165648936 305 - 171882078 gtgtg----------------ttttctttctcaagattattttggcttctttgggtcccttgcattttcatatgaacatcaaggctggcttttccatatctgc-aaaaaaga-ccattgggatttttgctaggg-----attgaatctgtagattgttttggg-gaatagtgccatcttagc-aatgttaa--catccattctctgaatgtggaatgtctttccatttatttctttcctctttaatttctttcagcaatattttattgttttacagttatcagggtaataatggcctcatagaatgaactaggtagtgtacccatgtattct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       503357 305 +   2379783 gtgtg----------------ttttctttctcaagattattttggcttctttgggtcccttgcattttcatatgaacatcaaggctggcttttccatatctgc-aaaaaaga-ccattgggatttttgctaggg-----attgaatctgtagattgttttggg-gaatagtgccatcttagc-aatgttaa--catccattctctgaatgtggaatgtctttccatttatttctttcctctttaatttctttcagcaatattttattgttttacagttatcagggtaatattggcctcatagaatgaactaggtagtgtacccatgtattct
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       460487 305 +   4116138 gtgtg----------------ttttctttctcaagattattttggcttctttgggtcccttgcattttcatatgaacatcaaggctggcttttccatatctgc-aaaaaaga-ccattgggatttttgctaggg-----attgaatctgtagattgttttggg-gaatagtgccatcttagc-aatgttaa--catccattctctgaatgtggaatgtctttccatttatttctttcctctttaatttctttcagcaatattttattgttttacagttatcagggtaataatggcctcatagaatgaactaggtagtgtacccatgtattct
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53892781 305 +  58131712 gtgtg----------------ttttctttttcaagattattttggcttctttgggtcccttgcattttcatatgaacatcaaggctggcttttccatatctgc-aaaaaaga-ccattgggatttttgctaggg-----attgaatctgtagattgttttggg-gaatagtgtcatcttagc-aatgttaa--catccattctctgaatgtggaatgtctttccatttatttctttcctctttaatttctttcagcaatattttattgttttacagttatcagggtaataatggcctcatagaatgaactaggtagtgttcccatgtattct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       513240 305 -   3636681 gtgtg----------------ttttctttctcaagattattttggcttctttgggtcccttgcattttcatatgaacatcaaggctggcttttccatatctgc-aaaaaaga-ccattgggatttttgctaggg-----attgaatctgtagattgttttggg-gaatagtgccatcttagc-aatgttaa--catccattctctgaatgtggaatgtctttccatttatttctttcctctttaatttctttcagcaatattttattgttttacagttatcagggtaataatggcctcatagaatgaactaggtagtgtacccatgtattct
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154523788 321 - 158406734 gtgtgagtcttccgaatttgtttttctttctcaagattattttggctacttcaggtcccttccacttttacgtgaacttcaaggctggcttttccatgtctgc-aaaaaaga-ctgttgcgatgtttgctaggggtggtattgaatctgtaggttgttgtggg-aaatagtgccatctt----aatgtggc--catctgctctctgaatgtggggtgtctttccatttatctcgaccctcttcaatgtctttcagcaatgtctcattgttttacagttatcagggtaatcat-gcctcatagaatg-actagggagtgtccccATATATtct
i calJac3.chr6              C 0 I 2171
s saiBol1.JH378292             355919 325 -   2682657 gtgtgagtcttccgactttgtttttcattctcaagattattttggctactttgggtcgcttctagttttacatgaacttcaaggctggtctttccttgtctgc-aaaaaaga-ctgttgggatttttgctagggatggtatttaatctgtagtttgttttggg-gaatagtaccatcttaac-aatgggat--catccattctctgaatgtgggatgcctttccattcatttcgatcctctttaatgtctttcagcaatgttttattgttttacagttatcacggtaataat-gcctcatagactgaactagggagtgttcccatatagtct
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       380127 315 -   2086007 gtgtgagtcttccaactttgtttttctttctcaagattattttggctacttcgagtcccttctagttttacatgaacttcaagtctggcttttccatgtctgc-aaaaaaga-cctttgggatttttgatagggatggtattgaatctgtacattgttttggg-gaatagtgccatcttaac-aatgtgat--cattcattctctgaatgtgggatgtc--tccatttatttcgattgtctttaatgtctttcagcaatgttttattgttttacagttatcagggtaataat-gcctcataggatgaactagggagtgtttcaa--------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       443423 325 +   3831555 gtgtgagtcttccgactttgtttttctttctcaaaattattttggctactgtgggtcccttccagttttacatgaacttgaaggctggcttttgcatgtctgc-aaaaaaga-ccgttgggatttttggtagggatggtattgaatctatagatcgttttggg-gaatagtgccatcttaac-aatgtgat--cgtccgttctctgaatgtgggatgtctttccatttatttcaatcctctttaatgtctttcagcaatgttttattgttttacagttatcagggtaataat-gcctcatagaatgaactagggagtgttcccatatattct
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60044175 316 -  91889043 --gtgagttttccaactttg-ttttttttctcaagattattttggctcttttgggtccttaggatttctatatgaatttcagggctggctttctcatgtctgt-aaacagtagctgttgggacttt--ctagaggttgtattgaatatatagattgcgttgggtgagtattgctattttaacaaatattaagtcttcctttccatgaacttgggatggctttatatttatttaggtcttctttcatttctttgagtagtattttatagttGTATTGTTATCAg----------gcctcaaagagtgagttagaaagtgttgcttccttttct
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e otoGar3.GL873689             468148 969 +   3845361 I
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I

a score=448538.000000
s hg38.chr15_KI270851v1_alt    194457 62 +    263054 gtttttagaagagtttgaggattggtgtcagttcagctttaaatgtttggtagagttgacca
s panTro5.chr15               9581572 62 +  83230942 gtttttagaagagtttcagaattggtgtcaattctgcttcaaatgtttggtagagttgacca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74111188 62 -  99763055 gtttttagaagagtttgaggattggtgtcaattctgctttaaatctttggtagagttgacca
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               71018523 62 + 121039945 gtttttagaagagtttgaggattggtgtcaattctgctttaaatgtttggtagagttgacca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164328277 62 - 169600520 gattttagaagagtttgaagattggtgtcaattttgctttaaatgtttggtagagttgacca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165649241 62 - 171882078 gtttttagaagagtttgaagattggtgtcaattttgctttaaatgtttggtagagttgacca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       503662 62 +   2379783 gtttttagaagagtttgaagattggtgtcaattttgctttaaatgtttggtagagttgacca
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       460792 62 +   4116138 gtttttagaagagtttgaggattggtgtcaattttgctttaaatgtttggtagagttgacca
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53893086 62 +  58131712 gtttttagaagagtttgaggattgatgtcaattttgctttaaatgtttggtagagttgacca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       513545 62 -   3636681 gtttttagaagagtttgaggattggcgtcaattttgctttaaatgtttggtagagttgacca
i manLeu1.NW_012102332v1    C 0 C 0
s saiBol1.JH378292             356244 62 -   2682657 ctttccagaagagttggaggattggtgtcaattctgctttaaatgtttggtagagttgacca
i saiBol1.JH378292          C 0 I 15
s cebCap1.NW_016107707v1       380442 60 -   2086007 --ctctagacgagctggaggatgggtgtcaattctgctttaaatgtttggtagagttgacca
i cebCap1.NW_016107707v1    C 0 I 3831
s aotNan1.NW_018503298v1       443748 62 +   3831555 gtttctagaggagttggaggattggtgtcagttctgctttaagtgtttggtagagttgacca
i aotNan1.NW_018503298v1    C 0 I 1377
s canFam3.chr3               60044491 62 -  91889043 atttttagaagaattagagaattggtattaatttttctttgaatgtttggtagcatttacca
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e otoGar3.GL873689             468148 969 +   3845361 I
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e calJac3.chr6              154524109 2171 - 158406734 I

a score=84080.000000
s hg38.chr15_KI270851v1_alt    194519 17 +    263054 ---------------cctaagcttttctttgt
s panTro5.chr15               9581634 17 +  83230942 ---------------cctaagcttttctttgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74111250 17 -  99763055 ---------------gctaagcttttctttgt
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               71018585 17 + 121039945 ---------------gctaagcttttctttgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164328339 17 - 169600520 ---------------gctaagcttttctttgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165649303 17 - 171882078 ---------------gctaagcttttctttgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       503724 17 +   2379783 ---------------gctaagcttttctttgt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       460854 17 +   4116138 ---------------gctaagcttttctttgt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53893148 17 +  58131712 ---------------gctaaacttttctttgt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       513607 17 -   3636681 ---------------gctaagcttttctttgt
i manLeu1.NW_012102332v1    C 0 C 0
s saiBol1.JH378292             356321 17 -   2682657 ---------------ccttagctttcctttgt
i saiBol1.JH378292          I 15 C 0
s canFam3.chr3               60044553 32 -  91889043 gttaagccatctggttctgggtttttctttgt
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e aotNan1.NW_018503298v1       443810 1377 +   3831555 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e calJac3.chr6              154524109 2171 - 158406734 I

a score=38590.000000
s hg38.chr15_KI270851v1_alt    194536 8 +    263054 tgaaagat
s panTro5.chr15               9581651 8 +  83230942 tgaaagat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74111267 8 -  99763055 tgaaagat
i panPan2.chr15             C 0 C 0
s rheMac8.chr7              164328356 8 - 169600520 tgaaagat
i rheMac8.chr7              C 0 I 2470
s macFas5.chr7              165649320 8 - 171882078 tgaaagat
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011934v1       503741 8 +   2379783 tgaaagat
i macNem1.NW_012011934v1    C 0 I 2423
s cerAty1.NW_012001462v1       460871 8 +   4116138 tgaaagat
i cerAty1.NW_012001462v1    C 0 I 2464
s chlSab2.chr26              53893165 8 +  58131712 tgaaagat
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       513624 8 -   3636681 tgaaagat
i manLeu1.NW_012102332v1    C 0 I 2464
s saiBol1.JH378292             356338 8 -   2682657 tgaaagat
i saiBol1.JH378292          C 0 C 0
s canFam3.chr3               60044585 8 -  91889043 tgagaggt
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e aotNan1.NW_018503298v1       443810 1377 +   3831555 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e nomLeu3.chr6               71018602 0 + 121039945 C
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e calJac3.chr6              154524109 2171 - 158406734 I

a score=1365.000000
s hg38.chr15_KI270851v1_alt    194544 1 +    263054 t
s panTro5.chr15               9581659 1 +  83230942 t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74111275 1 -  99763055 t
i panPan2.chr15             C 0 C 0
s chlSab2.chr26              53893173 1 +  58131712 t
i chlSab2.chr26             C 0 I 2453
s saiBol1.JH378292             356346 1 -   2682657 t
i saiBol1.JH378292          C 0 C 0
s canFam3.chr3               60044593 1 -  91889043 t
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e aotNan1.NW_018503298v1       443810 1377 +   3831555 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e nomLeu3.chr6               71018602 0 + 121039945 C
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e calJac3.chr6              154524109 2171 - 158406734 I
e macFas5.chr7              165649328 1 - 171882078 I

a score=1365.000000
s hg38.chr15_KI270851v1_alt    194545 1 +    263054 t
s panTro5.chr15               9581660 1 +  83230942 t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74111276 1 -  99763055 t
i panPan2.chr15             C 0 C 0
s macFas5.chr7              165649329 1 - 171882078 t
i macFas5.chr7              I 1 C 0
s saiBol1.JH378292             356347 1 -   2682657 t
i saiBol1.JH378292          C 0 C 0
s canFam3.chr3               60044594 1 -  91889043 t
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e aotNan1.NW_018503298v1       443810 1377 +   3831555 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e nomLeu3.chr6               71018602 0 + 121039945 C
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e calJac3.chr6              154524109 2171 - 158406734 I

a score=1820.000000
s hg38.chr15_KI270851v1_alt    194546 2 +    263054 tt
s panTro5.chr15               9581661 2 +  83230942 tt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74111277 2 -  99763055 tt
i panPan2.chr15             C 0 I 6697
s macFas5.chr7              165649330 2 - 171882078 tt
i macFas5.chr7              C 0 I 2467
s saiBol1.JH378292             356348 2 -   2682657 tt
i saiBol1.JH378292          C 0 I 214
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e canFam3.chr3               60044595 0 -  91889043 C
e aotNan1.NW_018503298v1       443810 1377 +   3831555 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e nomLeu3.chr6               71018602 0 + 121039945 C
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e calJac3.chr6              154524109 2171 - 158406734 I

a score=13754.000000
s hg38.chr15_KI270851v1_alt    194548 159 +    263054 tttttttttttctttg-agacggagtctcacactgttgcccgggctggactgcagtggcatgatctcggcccactgcaagctccgcctcccgggttcacgccattctccttccttagcctcctgagtagctgggattatagtcgccagccaccacgcccg
s panTro5.chr15               9581663 160 +  83230942 tttttttttttttttggagatggagtctcacactgttgcccgggctggactgcagtgatgtgatctcggcccactgcaagctccgcctcccgggttcacgccattctccttcctcagcctcctgagtagctgggattacagtcgcctgccaccacgcccg
i panTro5.chr15             C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e canFam3.chr3               60044595   0 -  91889043 C
e aotNan1.NW_018503298v1       443810 1377 +   3831555 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e nomLeu3.chr6               71018602   0 + 121039945 C
e panPan2.chr15              74111279 6697 -  99763055 I
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e saiBol1.JH378292             356350 214 -   2682657 I
e calJac3.chr6              154524109 2171 - 158406734 I
e macFas5.chr7              165649332 2467 - 171882078 I

a score=3521.000000
s hg38.chr15_KI270851v1_alt    194707 20 +    263054 gctaatt--ttttgtattttta
s panTro5.chr15               9581823 20 +  83230942 gctaatt--ttttgtattttta
i panTro5.chr15             C 0 C 0
s canFam3.chr3               60044595 22 -  91889043 gataattgattcagtattttta
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e aotNan1.NW_018503298v1       443810 1377 +   3831555 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e nomLeu3.chr6               71018602  0 + 121039945 C
e panPan2.chr15              74111279 6697 -  99763055 I
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e saiBol1.JH378292             356350 214 -   2682657 I
e calJac3.chr6              154524109 2171 - 158406734 I
e macFas5.chr7              165649332 2467 - 171882078 I

a score=11173.000000
s hg38.chr15_KI270851v1_alt    194727 117 +    263054 gtagagacggggtttcactgtgttagccaggatgctctcgatttcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccacggcgcctggcc
s panTro5.chr15               9581843 117 +  83230942 gtagagacggggtttcactgtgttagccaggatgctctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccacggcgcctggcc
i panTro5.chr15             C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e canFam3.chr3               60044617   0 -  91889043 C
e aotNan1.NW_018503298v1       443810 1377 +   3831555 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e nomLeu3.chr6               71018602   0 + 121039945 C
e panPan2.chr15              74111279 6697 -  99763055 I
e gorGor5.CYUI01000141v1       157712 1039 -    281578 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e saiBol1.JH378292             356350 214 -   2682657 I
e calJac3.chr6              154524109 2171 - 158406734 I
e macFas5.chr7              165649332 2467 - 171882078 I

a score=17286.000000
s hg38.chr15_KI270851v1_alt    194844 34 +    263054 tgaaagatttttaattaccgattcaatctcttta
s panTro5.chr15               9581960 34 +  83230942 tgaaagatttttaattactgattcaatctcttta
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       158751 34 -    281578 tgaaagatttttaattagcgattcaatctcttta
i gorGor5.CYUI01000141v1    I 1039 C 0
s nomLeu3.chr6               71018602 34 + 121039945 tgaaagattttaaattaccgattcaatctcttta
i nomLeu3.chr6              C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e canFam3.chr3               60044617  0 -  91889043 C
e aotNan1.NW_018503298v1       443810 1377 +   3831555 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e panPan2.chr15              74111279 6697 -  99763055 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e saiBol1.JH378292             356350 214 -   2682657 I
e calJac3.chr6              154524109 2171 - 158406734 I
e macFas5.chr7              165649332 2467 - 171882078 I

a score=155544.000000
s hg38.chr15_KI270851v1_alt    194878 244 +    263054 cttgttatggctctattcagattttctatttcttcttgagtcagtttgggtaatttat-gtttctaggaatgtgtccattttatctaggctattttatttgttggcatacagttgttcacagtgttcttttataatcttttttatttttat---gttggtagtactgtctccacttacatttctgatgttagttatttgcatcttttctctttttttttcttttttt----ttttttttttttttttgagat
s panTro5.chr15               9581994 234 +  83230942 cttgttacgggtctattcagattttctatttcttcttgagtcagtttgggtaatttat-gtttctaggaatgtgtccattttatctaggctattttatttgttggcatacagttgttcacagtgttcttttataatattttttatttttat---gttggtagtactgtctccacttacatttctgatgttagttatttgcatcttttctcttttttttc--------------ttttttttttttttgagac
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       158785 238 -    281578 cttgttacgggtctattcagattttctatttcttcttgagtcagttcgggtaatttat-gtttctaggaatgtgtccattttatttaggctattttatttgttggtatacagtagttcacagtgttcttttataatcttttttatttttat---gttggtagtactgtctccacttacatttctgatgttagttatttgcatcttcttttttttctttt------tt----ttttttttttttttttgagac
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71018636 227 + 121039945 cttgttatgggtctattcagattttctatttctttttgagtcagttcgggtaatttat-gtttctaggaatgtgtccattttatctaggctgttttatttgttggcatacagttgttcacagtgttcttttataatctcttttatttttat---gttggtaatactgtctccacttacatttctgatgttagttatttgcatcttctctcttttttttt---------------------tttttttgagac
i nomLeu3.chr6              C 0 C 0
s canFam3.chr3               60044617 251 -  91889043 tttgttataggtctattcacgttttatatttcttcttgagtcaattcagataatctgtggttcctaggaatttatccatttcatctaggttggctaatttgttggtgtataattgttcataatactcttttagagttctttttatttctgtagaatcagtagtagagtccctggtttcatttctg-ttttattttttgtcatctttttttctttgtttaatcaacctaaaagtttgtcaattttgttgatat
i canFam3.chr3              C 0 I 271
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e aotNan1.NW_018503298v1       443810 1377 +   3831555 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e panPan2.chr15              74111279 6697 -  99763055 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e saiBol1.JH378292             356350 214 -   2682657 I
e calJac3.chr6              154524109 2171 - 158406734 I
e macFas5.chr7              165649332 2467 - 171882078 I

a score=132799.000000
s hg38.chr15_KI270851v1_alt    195122 275 +    263054 ggagtctcactctgttgccaggccagagtgcagtgacacagtcttggctcactgcaacctccgcctcctggattcaagtgattctcctgcctcagcctcccaagtaagctgggactacaggcgcctgccgccaggcctggctaattttttttgtatttttagtggagatggggtttcaccatgttgaccaggatgatctaaatctcttgaccttgtgatccgcccacctcagcttcccaaagtgctgggattagaggcgtgagccaccttgactg
s panTro5.chr15               9582228 273 +  83230942 ggagtctcactctgttgccaggccggagtgcagtgacacagtctcggctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcagcctcccgagta-gctgggactacaggcgcctgccaccaggcccggctaattttttt-gtatttttagtggagacggggtttcaccatgttgaccaggatgatctaaatctcttgaccttgtgatccgcccacctcagcttcccaaagtgctggcattagaggcgtgagccaccttgactg
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       159023 272 -    281578 ggagtctcgctctcttgccaggccagagtgcagtggcacagtcttggctcactgtaacctccgcctcctgggttcaagtg-ttctcctgcctcagcctcccgaata-gctgagactacaggcacgcgccaccacgcccagctaattttttt-gtatttttagtggagatggggtttcaccatgttgaccaggatggtctcgatctcttgacctcgtgatcagcccacctcagctccccaaagtgctgggattacaggtgtgagccaccttgactg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71018863 273 + 121039945 ggagtcttgctctgttgccaggccggagtgcagtggcgcagtctcggctcactgcaacctccacctcctgggttcaagtgatcctcctgcatcagcctcccgagta-gctgggactacaggtgtgtgccaccacacccagctaattttttt-gtatttttagtggagacggggttttaccatgttgaccaggatggtctcgaactcttgacctcgcgatctgcccagctcagcttcccaaagtgctgggattacaggcgtgagccaccttgactg
i nomLeu3.chr6              C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e canFam3.chr3               60044868 271 -  91889043 I
e aotNan1.NW_018503298v1       443810 1377 +   3831555 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e panPan2.chr15              74111279 6697 -  99763055 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e saiBol1.JH378292             356350 214 -   2682657 I
e calJac3.chr6              154524109 2171 - 158406734 I
e macFas5.chr7              165649332 2467 - 171882078 I

a score=76308.000000
s hg38.chr15_KI270851v1_alt    195397 108 +    263054 gcctctttttttcttaatttacc-aaaagtttgtcagattttttgttcttgccagaaaccgaacttttggttttgtagatt---atttttctattctctatttaatttatgg
s panTro5.chr15               9582501 108 +  83230942 gcctctttttttcttaatttacc-aaaagtttctcagattttttgttcttgccagaaaccgaacttttgggtttgtagatt---atttttctattctctatttaatttatgg
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       159295 104 -    281578 gcctctttttttcttaatttacc-aagaatttgtcagattttttgttcttgccagaaaccaaacttttggttttg----tt---atttttctattctctatttaatttatgg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71019136 104 + 121039945 gcctctttttttcttaatttacc-aaaaatttgtcagattttttgttcttgccagaaaccgaacttttggttttg----tt---atttttctattctctgtttaatttatgg
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378292             356564 108 -   2682657 gctctcttttttcttaatttacctaaaagtttgtcactttttttgatcttgccaaaaaccgaacttggggtttta----ttgcgatttttctattccttatttcatttctga
i saiBol1.JH378292          I 214 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e canFam3.chr3               60044868 271 -  91889043 I
e aotNan1.NW_018503298v1       443810 1377 +   3831555 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e panPan2.chr15              74111279 6697 -  99763055 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e calJac3.chr6              154524109 2171 - 158406734 I
e macFas5.chr7              165649332 2467 - 171882078 I

a score=35602.000000
s hg38.chr15_KI270851v1_alt    195505 32 +    263054 ctgctctaatctctatcgtttccttctttctg
s panTro5.chr15               9582609 32 +  83230942 ctgctctaatctctatcgtttccttctttctg
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       159399 32 -    281578 ctgctctaatctctatcgtttccttctttctg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71019240 32 + 121039945 ctgctctaatctttatcgtttccttctttctg
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378292             356672 32 -   2682657 ccgctcttatccttattgcgtccttctttctg
i saiBol1.JH378292          C 0 C 0
s canFam3.chr3               60045139 32 -  91889043 ctgttctagtctttattatttccttctatcta
i canFam3.chr3              I 271 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e aotNan1.NW_018503298v1       443810 1377 +   3831555 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e panPan2.chr15              74111279 6697 -  99763055 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e calJac3.chr6              154524109 2171 - 158406734 I
e macFas5.chr7              165649332 2467 - 171882078 I

a score=150415.000000
s hg38.chr15_KI270851v1_alt    195537 183 +    263054 cttTGTAtttttttgtttttgtttttgtctttgttttgagacagggtcttactttgtccctcaggcccaagtacagtggcgcactcatggctcactgcagcctcaacctcctgggctcaagttatctacctgcctcagcctcccaaagtgctgggattacaggtgtgaggcacgacacctggc
s panTro5.chr15               9582641 183 +  83230942 ctttgtatttttttgtttttgtttttgtctttgttttgagacagggtcttactttgtccctcaggcccgagtacagtggcgcactcatggctcactgcagcctcaacctcctgggctcaagttatctacctgcctcagcctcccaaagtgctgggattgcaggtgtgaggtatgacacctggc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       159431 182 -    281578 ctttgtatttttttgtttttgtttttgtctttgttttgagacagggtcttacttt-tccttcaggccgaagtacagtggcacagtcatggctcactgcagcctcaacctcctgggctcaagttatccacctgcctcagcctcccaaagtgctgggattacaggtgtgaggcaccacacctggc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71019272 182 + 121039945 cttTGTAtttttttgtttttgtttttgtctttgttttgagacagggtcttacttt-tccctcaggccgaagtacagtggcgcagtcatggcttactgcagcctcaacctcctgggctcaagttatccacctgcctcagcctcccaaagtgctgggattacaggtgtgaggcaccacacctggc
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378292             356704 177 -   2682657 cttTGTA------TGtttttgtttttgtttttgttttgagactcgggcttactttgtccctcaggctgaagcacagtggcacagtcatggcttactgcagcctcaacctcctgggctcaagttacccgcctgcctcagccgcccaaagtgctgggattacaggtgggagccaccacacctggc
i saiBol1.JH378292          C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e canFam3.chr3               60045171   0 -  91889043 C
e aotNan1.NW_018503298v1       443810 1377 +   3831555 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e panPan2.chr15              74111279 6697 -  99763055 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e calJac3.chr6              154524109 2171 - 158406734 I
e macFas5.chr7              165649332 2467 - 171882078 I

a score=508183.000000
s hg38.chr15_KI270851v1_alt    195720 572 +    263054 ctaactttggtttttattgtgttcttatttttttagttcttccagatgtagag-----ttattgatttgaga----tcatcttttgtaaatgcagacttttatag--tataattgccccttttagccctgcttttggcccagcacagaagttttggtgtgttgtg------ttttcattcatctc-atagtattttctaatttcccttgtgatttcttctttgacccac-----------------------------------------------------------tgattgtttaccatgtgttgtttaattttcatatacttgtgaattttccacttttccttttgttattaatttctcatcatttccttttggttggagaaggtaacttgtatgattttcgtctgtttaaat---ttgagac----tttgtggcctaacatatggtctggtcagtctaagagagtgtcctgtggtatacttgagaagaacgtgtattctgctcttttt-ggtgaaatgttctgtatatgtctattagatctgattggtttatggtggtgttcTTTGGCTaaaa-ctgagatgctgcag--ggccagttgtcaaagtcacagtgaaaaagcaaggttttcccaagctcttataatcacatcagttt
s panTro5.chr15               9582824 566 +  83230942 ctaactttggtttttattgtgttatt----ttttagttcttccagatgtaaag-----ttattgatttgaga----tcatcttttgtaaatgcagacttttatag--tataattgccccttc-atccctgcttttggcgcagcacagaagttttggta-gttgtg------ttttcattcatctc-atagtattttctaatttcccttgtgatttcttctttgacccac-----------------------------------------------------------tggttgtttaccatgtgttgtttaattttcatatacttgtgaattttccactttttcttttgttattaatttctcatcatttccttttggttggagaaggtaacttgtatgatttgcgtctgtttaaat---ttgagac----tttgtggcctaacatatggtctggtcagtctaagagagtgttctgtggtatacttgagaagaacgtgtattctgctcttttt-ggtgagatgttctgtatatgtctattagatctgattggtttatggtggtgttcTTTGGCTaaaa-ctgagatgctgcag--ggccagttgtcaaagtcacagtgaaaaagcaaggttttcccaagctcttttaatcacatcagtct
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       159613 569 -    281578 ctaactttggtttttattgtgttatt----ttttagttcttccagatgtagagttaaattattgatctgaga----tcatcttttgtaaatgcagacttttatag--tataattgcaccttc-atccctgcttttggcgcagcacagaagttttggtatgttgtg------ttttcattcatctc-atagtattttctaatttcccttgtgatttcttctttgacctac-----------------------------------------------------------tggttgttcactgtgtgttgtttaattttcatatacttgtgaattttccacttttccttttgttattaatttc---tcatttcattttggttggagaaggtaatttgtatgattttagtctgtttaaat---ttgagac----tttgtggcctaacatatggtctggtcagtctaagagagtgttctgtggtatacttgggaagaatgtgtattctgctcttttt-ggtgagatgttctgtatatgtctattagatctgattggtttatggtggtgttcTTTGGCTaaaa-ctgagatgctgcaa--ggccagttgtcaaagtcacagtgaaaaagcaaggttttcccaagctcttttaatcacatcagtct
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71019454 575 + 121039945 ctaactttggtttttattgtgttcctatttttttagttcttccagatgtagagctaagttattgatttgaga----tcatcttttgtaaatgcagacttttatag--tataattgccccttt-tgccctgcttttggcgtagcacagaagttttggta-gttgtg------ttttcattcatctc-atagtattttctaatttcccttgtgatttcttctttgacccac-----------------------------------------------------------tggttgtttactgtgtgttatttaattttcatatacttgtgaattttccacttttccttttgttattaatttcttatcatttcattttggttggagaaggtaatttgtatgattttcgtctgtttaaat---ttgagac----tttgtggcctaacatacggtctggtcagtctaaaagagtgttctgtggtatacttgagaagaatgtgtattctgctcttttt-ggtgaaatgttctgtgtatgtctattagatctgattggtttatggtggtgttcTTTGGCTaaaa-ctgagatgctgcag--ggccagttgtcaaagtcacagtgaaaaagcaaggttttcccaagctcttttaatcacatcagtct
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378292             356881 641 -   2682657 ttaactttggtttttATCAtggtctt-cttttctagttcttccagggctagacttaagttgttgattggaga----ttgtcttttgtaaatgcatacgttcatag--aacagttgcccctgttcgccctgcttttggcgcaacacagaagttttggtatgttgtg------ttttcgttcatctcaatagtgttttctaattttccttgcgatttcttctttgacccactgatggtttactgtgtagagttgatcagcgaaagcatccggtccttagctttcccttgttgattgtttactgtgtgtgatttaattttcatatacttgtgaattttccacttttccttttgttactgatttc---tcattccattttggttggggaagataatttgtatgattttagtctgtttaaat---ataggactgatttcgtggcctaacatacagtctggtcagcctaagagagtgttctctggtatgcttgagcagaaagcgtattctgctctttttgggtgaaatgctttgtatgtgtctgttagatctgattggcttatggtgttcttcCTTGGTTAaaatctgagatgccgcaggagggctgttgtcaaaggcaaagtaaaaaagcaaggttttcccaagctctttaaacctcatcagtct
i saiBol1.JH378292          C 0 I 103
s canFam3.chr3               60045171 506 -  91889043 ctgaatttgg-gtttactgtattcttatttttctagtgtctccaagtgtagagtcaagttactaatttgagatttttcttctttttttaatgtatgcattgatagacaaaaatttccatctt-agcactgctttttctgcatcccatacgttttggtatgttgtgctttttttttaatttgtctcaaaagtatttttaaattt--ctcatgatttttttt----ccttt-----------------------------------------------------------gggcagttaagtgtatgtaatttaatttccatatacttgtgaaatttctagttttcc--ttgttactagtttc---tagtttcattct-gttagagaatgtaatttgtatgattatagtatattttgatttattgagatttattttatggtctagcatgtggtct-----atcctggaaaatgttccat-gtacctttgagaagattgagtatcctg---------------------------------------------------------------------aaat-ctgagatactgtaa--ggccagtgttccaatcca-agt-aaaaagcaaggctttcctaagctctt-tgatctcgtcaatct
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e aotNan1.NW_018503298v1       443810 1377 +   3831555 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e panPan2.chr15              74111279 6697 -  99763055 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e calJac3.chr6              154524109 2171 - 158406734 I
e macFas5.chr7              165649332 2467 - 171882078 I

a score=109296.000000
s hg38.chr15_KI270851v1_alt    196292 83 +    263054 ta-gagttcacattaatccattcaaaaatatgtatcaggccagGctgtaatcgtagcactttgggaggctcaggcgggtggatt
s panTro5.chr15               9583390 84 +  83230942 taagagttcacattaatccactcaaaaatatgtatcaggccagGctgtaatcgtagcactttgggaggctcaggcgggtggatt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       160182 83 -    281578 ta-gagttcacattaatccattcaaaaatatgtatcaggccagGctgtaatcctagcactttgggaggctgaggcgggtgggtc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71020029 83 + 121039945 ta-gagttcacattaatccattcaaaaatatgtatcaggccagGctgtaattgtagcactttgggaggctgaggcgagtggatt
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378292             357625 83 -   2682657 TA-GAGTCTGCATTCATCCATTCAAAACTATGTATCAGGCCAGGctgtaatcctagcactttaagaggcagaggcaggtgggtc
i saiBol1.JH378292          I 103 C 0
s aotNan1.NW_018503298v1       445187 83 +   3831555 TA-GAGTCCACATTCATCCATTCAAAAATATGTATCAGGCCAGGctgtaatcctagcactttgagaggcagaggcaggtgggtc
i aotNan1.NW_018503298v1    I 1377 C 0
s canFam3.chr3               60045677 75 -  91889043 tt-gtgtccaca-tgacctgttcaaaaatatgcatcaggctagaaaacaatc--agc-ctctgag----tcaggcatctggttt
i canFam3.chr3              C 0 I 364
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e panPan2.chr15              74111279 6697 -  99763055 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e calJac3.chr6              154524109 2171 - 158406734 I
e macFas5.chr7              165649332 2467 - 171882078 I

a score=277168.000000
s hg38.chr15_KI270851v1_alt    196375 237 +    263054 gcttgagctcaggagtttgagaccaacttgggcaacatagcgaaaccctctctctacaaaaaatacgaaaattagctgggcatagtggtgtgtgcctgtggtcccagctacctgggaggctgaggtgggaggattgcttgagccagggatgcagaggttgcagtgagcggagatcaagccactgcactccagcctgggctccagcctgggtgacagagtgaaatcctgtctTGGGGG
s panTro5.chr15               9583474 237 +  83230942 gcttgagctcaggagtttgagaccaacttgggcaacatagcgaaaccctgtctctaccaaaaatacgaaaactagctgggcatagtggtgtgtgcctatggtcccagctacctgggaggctgaggtggtaggattgcttgagccagggaggcagaggttgcagtgagcggagatcaagccactgcactccagcctgggctccagcctgggcgacagagtgaaatcctgtcttaGGGG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       160265 237 -    281578 gcttgagctcaggagtttgagaccaacttgggcaacatagagaaaccctgtctctacaaaaaatacaaaaactagctgggcatagtggtgtgtgcctatggtcccagctacctgggaggctgaggtggtaggattgcttgagccagggaggcagaggttgccgtgagcggagatcaagccactgcactccagcctgggctccagcctgggcgacaaagtgaaatcctgtctTGGGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71020112 237 + 121039945 gcttgagctcaggagtttgagaccaacttgggcaacatagcgaaaccttgtctctacaaaaaatacgaaaactagctgggcatagtggtgcgtgcctatggtcccagctacccgggaggctgaggtgggaggattgcttgagccagggaggcagaggttgcagtgagcagagatcaagccactgcattccagcctgggctccagcctgggcgacagagtgaaatcctgtctTGGGGT
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378292             357708 227 -   2682657 gcttgagctcaggagttcgagagcaacttgggcaacgtggcaaaaccctgtctctacaaaaaacagaaaaattacctgggcatagtggtgtgtacctgtggtcccagctacctggcaggctgaggtggaaagattttttgaaccaaggaggcagaggttgcggtaagcgg---tcggaccactgcactccagcctgggcgacagc-------acagcgtgagatcctgtctTGTGGG
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       445270 230 +   3831555 gcttgagctcaggagttcgagaccaacttgggcaatgtggtaaaaccctgtctctacaaaaaatacgaaaattacctgggcatagtggtgtgtacctgtggtcccagctacctgggagactgaggtgggaagattgtttgaaccaaggaggcagaggttgcagtaagcggagatgggaccactgcactccagcctgggtgacagc-------acagcatgagatcctgtctTGTGGG
i aotNan1.NW_018503298v1    C 0 I 25
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e canFam3.chr3               60045752 364 -  91889043 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e panPan2.chr15              74111279 6697 -  99763055 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e calJac3.chr6              154524109 2171 - 158406734 I
e macFas5.chr7              165649332 2467 - 171882078 I

a score=19423.000000
s hg38.chr15_KI270851v1_alt    196612 49 +    263054 TGGGTGGAAtctttctatctgtctgtctgtctgtct--------------------------ctctctctctctc
s panTro5.chr15               9583711 75 +  83230942 TGGGTGGAAtctttctgtctgtctgtctgtctgtctgtctgtctctctgtctctctctctctctctctctctctc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       160502 57 -    281578 TGGGGGGAATCTTtctgtctgtctgtctgtctgtctgtctgtTt------------------ctctctctctctc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71020349 53 + 121039945 CGGGGGGAAtctttctgtctatctgtctgtctgtctctct----------------------ctgtctctctctc
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378292             357935 25 -   2682657 -GAAAAAAATCTGTC----------TCTGTCTGTCT---------------------------------------
i saiBol1.JH378292          C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e canFam3.chr3               60045752 364 -  91889043 I
e aotNan1.NW_018503298v1       445500 25 +   3831555 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e panPan2.chr15              74111279 6697 -  99763055 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e calJac3.chr6              154524109 2171 - 158406734 I
e macFas5.chr7              165649332 2467 - 171882078 I

a score=148995.000000
s hg38.chr15_KI270851v1_alt    196661 161 +    263054 ------tcta----------------tat------atatatataattattttttaatttatatattatgtttatatgttgtattatgttaaatat-atatTTTAATatgtatattacagctgaaaagaatcatctagtaagggttatatctgatttcctgaggcctcattagcaaccaaaagttgcattt
s panTro5.chr15               9583786 161 +  83230942 ------tcta----------------tat------atatatataattattttttaatttatatattatgtttatatgttgtattatgttaaatat-atgttttaatatgtgtatTACAGCTGAAgagaatcatctagtaagggttatatctgatttcctgaggtctcattagcaaccaaaagttgcattt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       160559 169 -    281578 ------tctAtgtgtgtgtgtgtgtgtat------atatatata---attttttaatttatatattatatttatatgttg-----tgttaaatat-atatTTTAATatgcatattacagctgaaaataataatctagtaagggttatatctgatttcttgaggcctcgttagcaaccaaaagttgcattt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71020402 167 + 121039945 ------tcta----------------tatataaaaatatataaaattattttttaatttatgtattatatttatatgttgtattatgttaaatat-atatTTTAATatgcgtattacagctgaaaagaatcacctagtaagagttatatctgatttcttgaggcctcattagcaaccaaaagttgcattt
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378292             357960 152 -   2682657 ACATATTTGA----------------TAT------AT----------ATTTTTAAATTTA-----CATGTTTCTATGTTGGGttatattaaatat-atattttaaGACATGTATTACAGCTGAAgagaatcatccactaagagtcgtgtctgatttcttaaggcctcattagcaaccacaagtagccttt
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       445525 147 +   3831555 ------TCGa----------------tat------at----------atttttaaattta-----catatttatatgttgggttatattaaatataatattttaatatatgtatTACAGTTGAAgagaatcatccactaagagttacatctgatttctttgggcctcattagcaaccaaaagttgccttt
i aotNan1.NW_018503298v1    I 25 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e canFam3.chr3               60045752 364 -  91889043 I
e otoGar3.GL873689             468148 969 +   3845361 I
e cebCap1.NW_016107707v1       380502 3831 -   2086007 I
e panPan2.chr15              74111279 6697 -  99763055 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e calJac3.chr6              154524109 2171 - 158406734 I
e macFas5.chr7              165649332 2467 - 171882078 I

a score=275753.000000
s hg38.chr15_KI270851v1_alt    196822 134 +    263054 aaaaattacaaaagcatatctccatcgagaaatggcctttttatgttgtctacttttcccccagaggttccaataagtaaaaatcacagcacaaatcattaagtatggggacttgttctgttgataatattcat
s panTro5.chr15               9583947 134 +  83230942 aaaaattacaaaagcatatctccatcgagaaatggcctttttatgttgtctactttttccccagaggttccaataagtaaaaatcacagcacaaatcattaagtacggggacttgttctgttgatagtattcat
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       160728 134 -    281578 aaaaattacaaaagcatatctccatcgagaaatggcctttttatgttgtctactttttccccagaggttccaataaggaaaaatcacagcacaaatcattaagtatggggactagttctgttgatagtattcat
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71020569 134 + 121039945 aaaaattacaaaagcatatctccatcgagaaatggcctttttatgttgtctactttttccccagaggttccaataagtaaaaatcacagcacaaatcattaagtatggagacttgttctgttgctagtattcat
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6              154526280 122 - 158406734 aaaaattacacaagcgcatctccattgagaaatggcctttttatcttgtctacttttcccctagaggctccaataagtaa------------aaatcattaagtatggggactcgttctgttgacagtattcat
i calJac3.chr6              I 2171 C 0
s saiBol1.JH378292             358112 122 -   2682657 aacaatgacaaaagcgtatctccattgagaaatggcctttttgtgttgtctacttttcccccagaggtgccaataagtaa------------aaatcattaagtatggggacttgttctgttgatcgtattcat
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       384333 122 -   2086007 aaaaattacaaaagcgtgtctccattgagaaatggcctttttatgttgtctacttttcccccagtggctccaataagtaa------------aaatcgttaagtgtggggactcgttctgttgatagtattcat
i cebCap1.NW_016107707v1    I 3831 C 0
s aotNan1.NW_018503298v1       445672 122 +   3831555 aaaaattacaaaagagcatctcctttgagaagtggcctttttatgttgtctcctttttccccagaggctccaatgagtaa------------aaatcgttaagtatggggactcgttctgttgatagtattcat
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e canFam3.chr3               60045752 364 -  91889043 I
e otoGar3.GL873689             468148 969 +   3845361 I
e panPan2.chr15              74111279 6697 -  99763055 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e macFas5.chr7              165649332 2467 - 171882078 I

a score=276738.000000
s hg38.chr15_KI270851v1_alt    196956 111 +    263054 gtgtttaaatttcatctggcccactggctgcaaaaagcaaggaagttgtgtctcatgaatatccgtctatatttgcagcctgccctgatcagggta-------tccttcttatcattt
s panTro5.chr15               9584081 111 +  83230942 gtgtttaaatttcatctggcccactggctgcaaaaagcaaggaagttgtgtctcatgaatatccgtctgtatttgcagcctgccctgatcagggta-------tccttcttatcattt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       160862 111 -    281578 gtgtttaaatttcatctggcccactggctgcaaaaagcaaggaagttgtgtctcatgaatatccgtctatatttgcagcctgccctgatcagggta-------tccttcttgtcattt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71020703 108 + 121039945 gtgtttaaatttcatctggcccactggctgcaaaaagcaaggaagttgtgtctcatgaatatctgtctatatttgcagcttgccctgatcagcgta-------tc---cttatcactt
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6              154526402 108 - 158406734 gaatttaaattccacctggcccactggctgcgaaaagcaaggaagttgtgtctcatgaatatctgtctatatttgcaacttgccctgatcagggta-------tctctcttattt---
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             358234 108 -   2682657 gaacttaaattctgcctggcccactggctgcacgaagcaaggaagttgtgtctcatgaatatctgtctatatttgcaacttgccctgatcagggta-------tctctcttattt---
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       384455 108 -   2086007 gaatttaaattccacctggcccactggctacaaaaagcaaggaagttgtgtctcatgaatatctgtctatatttgcaacttgccctgatcagggta-------tctctcttattt---
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       445794 108 +   3831555 gaatttaaattccacctggcccactggctgcaaaaagcaaggaagttgtgtctcatgaatatctggctatatttgcaacttaccctgatcagggta-------tctctcttattt---
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60046116 113 -  91889043 gagtttaaatttgaacctgcctactggctgcagaaagcaaaggagttgtatatcatgaatacatatttatatttaccactttccttgatcaggatgatttttttctttcatat-----
i canFam3.chr3              I 364 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e otoGar3.GL873689             468148 969 +   3845361 I
e panPan2.chr15              74111279 6697 -  99763055 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I
e manLeu1.NW_012102332v1       513632 2464 -   3636681 I
e cerAty1.NW_012001462v1       460879 2464 +   4116138 I
e macNem1.NW_012011934v1       503749 2423 +   2379783 I
e rheMac8.chr7              164328364 2470 - 169600520 I
e chlSab2.chr26              53893174 2453 +  58131712 I
e macFas5.chr7              165649332 2467 - 171882078 I

a score=9555.000000
s hg38.chr15_KI270851v1_alt    197067 1 +    263054 a
s panTro5.chr15               9584192 1 +  83230942 a
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       160973 1 -    281578 a
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71020811 1 + 121039945 a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164330834 1 - 169600520 a
i rheMac8.chr7              I 2470 C 0
s macFas5.chr7              165651799 1 - 171882078 a
i macFas5.chr7              I 2467 C 0
s macNem1.NW_012011934v1       506172 1 +   2379783 a
i macNem1.NW_012011934v1    I 2423 C 0
s cerAty1.NW_012001462v1       463343 1 +   4116138 a
i cerAty1.NW_012001462v1    I 2464 C 0
s chlSab2.chr26              53895627 1 +  58131712 a
i chlSab2.chr26             I 2453 C 0
s manLeu1.NW_012102332v1       516096 1 -   3636681 a
i manLeu1.NW_012102332v1    I 2464 C 0
s calJac3.chr6              154526510 1 - 158406734 a
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             358342 1 -   2682657 a
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       384563 1 -   2086007 a
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       445902 1 +   3831555 a
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60046229 1 -  91889043 a
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e otoGar3.GL873689             468148 969 +   3845361 I
e panPan2.chr15              74111279 6697 -  99763055 I
e colAng1.NW_012115278v1       491111 4254 -   4457520 I

a score=5077087.000000
s hg38.chr15_KI270851v1_alt    197068 654 +    263054 agaaattataaacatataatattttataccagcttaatgtatacatccacatgtaacagccacaaaacataaagctatgtaaaataaaaaa-attccccccg-gttt---tggttgcaaatttattcaagcccttagcaatacattcagtctttacagagttaacagtatagctgccc-aggggctcctgggagatccacctggaatgcaactcctgtcccttccttggggccccttcctgggggccctcaagtagcggctaggctaaaggaaaggctgtttctcctgc---------------------tagtttatctaaagttttgctccagccctgggaattgaat---atccttttttgttctcttgga-agagagagaaacacaaactttttaca-ttttttggtccaccccagcccacctttgggactgtttggatctttttccctcccacctggaggagaaaactaaaatcaagggagttaccagaaccacactcctac-cccctctcagtttagcaagt--gggaaaaggggggttaaaaatctagcctact--ctcctagggttagcgctcctattttcagatccattgggaagttttacttctctcaggtgacagcagctcggcttctgttttgtgc-tacggatgactctgtagccacc---------------------------------------------------cagggcacc---------------------aaTtgt-------------------------------cagggg
s panTro5.chr15               9584193 653 +  83230942 agaaattataaacatataatattttataccagcttaatgtatacatccacatgtaacagccacaaaacataaagctatgtaaaatcaaaaa--ttcccccca-gttt---tggttgcaaatttattcaagtccttagcaatacattcagtctttacagagttaacagtatagctgccc-aggggatcctgggagatccacctggaatgcaactcctgtcccttccttggggccccttcctgggggccctaaagtagcggctaggctaaaggaaaggctgtttcccctgc---------------------tagtttatctaaagttttgctccagccctgggaattgaat---atcctttgttgctctcttgga-agagagagaaacacaaactttttaca-ttttttggtccacccaagcccacctttgggactgtttgggtctttttcccgcccacctggaggagaaaactaaaatcaagggagttaccagaaccacactcctac-cccctctcagtttagcaagt--gggaaaaggggggttaaaaatctagcctact--ctcctggggttagcactcctattttcaaatccattggtaagttttacttctctcaggtgacagcagctcagcttctgtttcatgc-tatggattactctgtagccacc---------------------------------------------------cagggcacc---------------------aaTtgt-------------------------------cagggg
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       160974 650 -    281578 agaaattataaacatataatattttataccagcttaatgtatacatccacatgtaacagccacaaaacataaagctatgcaaaatgaaaaa---ttccccca-gttt---tgcttgcgaatttatccaagtccttagcaatacattcagtctttacagagttaacagtatagctgccc-aggggatcctgggagatccacctggaatgcaactcctgtcccttccttggggccccttcctgggggccctaaagtagcggctaggctaaaggaaaggctgtttcccctgc---------------------tagtttatctaaagttttgctccagccctgggaattgaat---atcctttgttgctctcttgga-agagagagaaacacaaactttttaca-ttttttggtccacccaagcccacctttgggactgtttggatctttttccctcccacctggaggagaaaactaaaatcaagggagttaccagaaccacactcctac-cccctctcagtttagcaagt--gggaaaaggggggttaaaaatctagcctact--ctcctagggttagctctcctattttcaaatccattggtaagttttacttctctcaggtgacagcagctcggcttctgttttgtgc-tatggatga--ctgtagccacc---------------------------------------------------cagggcacc---------------------aaTtgt-------------------------------cagggg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71020812 633 + 121039945 agaaattataagcatataatattttataccagcttaatgtatacatccacatgtaacagccacaaaacataaagctatgtaaaataaaaaa---ttccccca-gttt---tggttgcaaatttattcaagcccttagcaataaattcagtctttacagagttaacagtatagctgc--------------------ccacctggaatgcaactcttgtcccttccttggggccccttcctgggggccctaaagtagcagctaggctaaaggaaaggctgtttccccctc---------------------tagtttatctgaagttttgctccagccctgggaattgaat---atccctttttgctctcttgga-agagagagaaacacaaactttttaca-ttttttggtccaccaaagcccacctttgggactgtttggatctttttccttcccacctggaggagaaaactaaaatcaagggagttaccagaaccgcactcctac-cccctctcagtttagcaagt--gggaaaaggggggttaaaaatctagcctact--ctcctagggttagctctcctattttcaaatccattggtaagttttacttctctcaggtgacagcagctcagcttctgtttcatgc-tatggatgactctgtagccacc---------------------------------------------------cagggcacc---------------------aaTtgt-------------------------------cagggg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164330835 640 - 169600520 agaaattataagcatataatattttatactaacttaatgtatacatccacatgtaacagccacaaaatat-aagctatgtaaaataaaaat---ttccccca-gttt---tggttgcaaatttcttcaagccactgg---------cagtctttacagagttaacagtataactgcgc-aggggatcctgggagattcgcctgtaatgcatctcctgtcccttccttgggacccattcttgggtcccccaaagtagcagctaggctaaaggaaaggctgtttcccctgc---------------------tagtttatgtaaagttttgctccagtcctgagaattgaat---atccttttttactctcacgg---gagagggaaacacaaactttttaca-ttttttggtcaacccaagcccacctttgggactgtttggatctttttccctcctacccagaggagaagactaaaaccaagggagttaccaggaccacactcctac-cccctctcagtttagcaagt--gggaaaaggggggttaaaaatctagcgtact--ttcctagggttagatctcccattttcaaatccattggtaaggttttcttctttcaggtgacagcagatcagcttctgtttcatgc-tgtggatgactctgtggccatc---------------------------------------------------caggGCCCC---------------------AGTtgt-------------------------------cagggg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165651800 640 - 171882078 agaaattataagcatataatattttatactaacttaatgtatacatccacatgtaacagccacaaaacat-aagctatgtaaaataaaaat---ttccccca-gttt---tggttgcaaatttcttcaagccactgg---------cagtctttacagagttaacagtataactgCGC-AGGGGATCCTGGGAGATTCGCCTGTAATGCATCTCCTGTCCCTTCCTTGGGACCCATTCTTGGGCCCCCCAAAGTAGCAGCTAGGCTAAAGGAAAGGCTGtttcccctgc---------------------tagtttatgtaaagttttgctccagtcctgagaattgaat---atccttttttactctcacgg---gagagggaaacacaaactttttaca-ttttttggtcaacccaagcccacctttgggactgtttggatctttttccttcctacccagaggagaaaactaaaaccaagggagttaccaggactgcactcctac-cccctctcagtttagcaagt--gggaaaaggggggttaaaaatctagcgtact--ttcctagggttagatctcccattttcaaatccattggtaaggttttcttctttcaggtgacagcagatcagcttctgtttcatgc-tgtggatgactctgtggccatc---------------------------------------------------caggGCCCC---------------------AGTtgt-------------------------------cagggg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       506173 640 +   2379783 agaaattataagcatataatattttatactaacttaatgtatacatccacatgtaacagccacaaaacat-aagctgtgtaaaataaaaat---ttccccca-gttt---tggttgcaaatttcttcaagccactgg---------cagtctttacagagttaacagtataactgcgc-aggggatcctgggagattcgcccgtaatgcatctcctgtcccttccttgggacccattcttgggccccccaaagtagcagctaggctaaaggaaaggctgtttcccctgc---------------------tagtttatgtaaagttttgctccagtcctgagaattgaat---atccttttttactctcacgg---gagagggaaacacaaactttttaca-ttttttggtcaacccaagcccacctttgggactgtttggatctttttccctcctacccagaggagaaaactaaaaccaagggagttaccaggaccgcactcctac-cccctctcagtttagcaagt--gggaaaaggggggttaaaaatctagcgtact--ttcctagggttagatctcccattttcaaatccattggtaaggttttcttctttcaggtgacagcagatcagcttctgtttcatgc-tgtggatgactctgtggccatc---------------------------------------------------caggGCCCC---------------------AGTtgt-------------------------------cagggg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       463344 641 +   4116138 agaaattataagcatataatattttatactaacttaatgtatacatccacatgtaatagccacaaagcataaagctatgtaaaataaaaat---ttccccca-gttt---tggttgcaaatttcttcaagccactgg---------cagtctttacagagttaacagtataactgcgc-aggggatcctgggagattcgcctgtaatgcaactcctgtcccttccttgggacccattcttggggcccccaaagtagcagctaggctaaaggaaaggctatttcccctgc---------------------tagtttatgtaaagttttgctccagtcctgagaattgaat---atccttttttactctcacgg---gagagggaaacacaaactttttaca-ttttttggtcaacccaagcccacctttgggactgtttggatctttttccctcctacccagaggagaaaactaaaaccaagggagttaccaggaccgcactcctac-cccctctcagtttagcaagt--gggaaaaggggggttaaaaatctagcgtact--ttcctagggttagatctcccattttcaaatccattggtaaggttttcttctttcaggtgacagcagatcagcttctgtttcatgc-tgtggatgactctgtggccatc---------------------------------------------------cagggcacc---------------------aGTtgt-------------------------------cagggg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53895628 638 +  58131712 agaaattataagcat---atattttatactaacttaatgtatacatccacatgtaacagccacaaaacataaagctatgtaaaataaaaat---ttccccca-attt---tggttgcaaatttcttcaagccactgg---------cagtctttacagagttaacagtataactgcgc-agaggaTCCTGGGAGATCCACCTATAATGCAACTCCTGTCCCTTCCTTGGGACCCATTCTTGGGGCCCCCAAAGTAGCAGCTAGGCTAAAGGAAAGGCTGtttcccctgc---------------------tagtttatgtaaagttttgctccagtcctgagaattgaat---atccttttttactctcacgg---gagagggaaacacaaactttttaca-ttttttggtcaacccaagcccacctttgggactgtttggatctttttccctcctacccagaggagaaaactaaaaccaagggagttaccaggaccgcactcctac-cccctctcaatttagcaagt--gggaaaagggggattaaaaatctagtgtact--ttcctagggttaggtctctcattttcaaatccattggtaaggttttcttctttcaggtgacagcagatcagcttctgtttcatgc-tgtggatgactctgtggccatc---------------------------------------------------caggGCACC---------------------AGTtgt-------------------------------ctgggg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       516097 641 -   3636681 agaaattataagcatataatattttatactaacttaatgtatacatccacatgtaacagccacaaaacataaagctatgtaaaataaaaat---ttccccca-gttt---tggttgcaaatttcttcaagccactgg---------cagtctttacagagttaacagtataactgcgc-aggggatcctgggagattcgcctgtaatgcaactcctgtcccttccttgagacccattcttggggcccccaaagtagcagctaggctaaaggaaaggctgtttcccctgc---------------------tagtttatgtaaagttttgctccagtcctgagaattgaat---atccttttttactctcacgg---gagagggaaacacaaactttttaca-ttttttggtcaacccaagcccacctttgggactgtttggatctttttccctcctacccagaggagaaaactaaaaccaagggagttaccaggaccgcactcctac-cccctctcagtttagcaagt--gggaaaaggggggttaaaaatctagtgtact--ttcctggggttagatctcccattttcaaatccattggtaaggttttcttctttcaggtgacagcagatcagcttctgtttcatgc-tgtggatgactctgtggccatc---------------------------------------------------cagggcacc---------------------aGTtgt-------------------------------cagggg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       495365 637 -   4457520 agaaattataagcatataatattttatactaacttaatgtatacatccacatgtaacagccacaaaacataaagctatgtaaaataaaaat---ttccccca-gttt---tggttgcaaatttcttcaagccgctag---------cagtctttacagagttaacagtataactgtgc-aggggatcctgggagatccacctgtaatgcaactcctgtcccttccttgggacccattcttggggcccccaaagtagcagctaggctaaaggaaaggccgtttcccctgc---------------------tagttcatgtaaagttttgctctagtcctgggaattgaat---atccttttttactctcacag---gagagagaaacacaaactttttaca-ttttttggtcaacccaagcccacctttgggactgtttggatctttttccctcctacccggaggagaaaactaaaaccaagggagttaccaggaccacactcctac-cccctc----tttagcaagt--gggaaaagggggattaaaaatctagcgtact--ttcctagggttagatctcccattttcaaatccattggtaaggttttcttctttcaggtgacagcagatcagcttctgtttcatgc-tgtggatgactctgtggccatc---------------------------------------------------cagggcacc---------------------aGTtgt-------------------------------cagggg
i colAng1.NW_012115278v1    I 4254 C 0
s calJac3.chr6              154526511 592 - 158406734 agaaa------------------ttatacaaacttaatgtacacatccacatgcaacagccacaaaatgtaaagctatttaaaataaaaaa---tgccccca-tttt---tggttgcaaatttgttgaagcccctagcaacaaattcagtc--tacagagttagcagtgtagctgccc-aggaggtcctgggagacccacctggaatgcagctcctctcccttcctggggg---------------cgcaaagcagcagctgggctaaaggaaaggctgtttcccccac---------------------cagcttacctaaggttttgctccagccctgggaa-tgaat---gtccttttttactctcttgga---agagagagtaacagactttttacatttttttggtccacctaagcccatctttgggactttttggatccttttccctcccacttgggggagaaaactgcaaccaacggagttacccggaccgcactcccca-cccctctcagtttagcaggt--gggaaaagggg--ttaaaaaactagcctcc-----------------tctcccattttcaaatccatcagcaagttttacttttcttaggttccaggagctcagcttctgtttcatgc-tgtggttgtctctgtagcctgc---------------------------------------------------cagggcacc---------------------aaTTGT-------------------------------------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             358343 617 -   2682657 agaaat--------tataatattttatactgacttaatgtacacatccgcattcaacagccacaaaatgtaaagctatttaaaataagaaaaattcccccca-cttt---tggttgcaaatgtattgaagcccctagcaacaaattcagtc--tacagagttagcagtgtggctgccc-aggaggtcctgggagacccacctgggatgcagctcctctcccttcctgg-------------------gcagagcagcagctgggctgaaggaaaggctgtttcccctac---------------------gagcttacctaaagtactgctccagccctgggaactgaatatcgtttttttttaccctcttgga-agagagagagaaacaaactttctacatttttttggtctacctaagcccacctttgggactgtttggatccttttccctcccacctgggggagaaaact--aacccagggagttaccgggaccacactccccaccccctctcagtttagcaagt--gggaaaagggg--ttaaaaatctagcctcct--ctcctggggttagatctcccattttcaaatccatcagcaagttttacttttctcaggtttcaggagctcagcttctgtttcatgc-tgtggttgactctgtg----gc---------------------------------------------------cagggcacc---------------------aaTCGT-------------------------------------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       384564 623 -   2086007 agaaattataagcatataatattttatactgac--agtgtacacatccgcatgcaacagccacaaaatgtaaagctatttaaaattaaaaa-attcccccca-tttt---tggttgcaaatttattgaagcccctagtaacaaattcagtc--tacagagttagcagtgtagctgccc-aggaggtcctgggagacccacctggaatgcagctcctgtcccttcctgg-------------------gcaaagcagcagctgggctaagggaaaggctgtttcccctac---------------------tagcttacctaaagtattgctccagccctgggaattgaat---atccttttttaccctcttgga-agagagagaaacacaaactttttacatttttttggtctacccaagcccacctttgggactgtttggatccttttccctcccacctaggggagaaaactacacccaagggagagaccgggaccgcactcccca-cccctctcaatttagcaagt--ggg-aaagggg--ttaaaaatctagcctcct--ctcctggggttagatctcccattttcaaatccatcagcaagtgttagttttctcaggttccaggagctcagcttctgtttcatgc-tgtggttgactctgtggccagc---------------------------------------------------cagggcacc---------------------aaTTGT-------------------------------------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       445903 631 +   3831555 ataaattataagcatataatcttttatgctaacttaatgtacacatccgcatgcaacagccacaaaatggaaagcgatttaaaataaaaaa--ttccccccattttt---tggttgcaaatttactgaagcccctagcaacaaattcagtc--tacagagttagcagtgtagctgccc-aggaggtcctgggaggcccacctggaatgcagctcctgtcccttcctggggg---------------tccagagcagcagctgggctaaaggaaaggctgtttcccccac---------------------tggcttacctaaagttttgctccagccctgggaattgaat---atccttttttactctctttga-agagagagaaacacatactttttacatttttttggtccacctaagcccacgtttgggactgtttggatccttttccctcctacctgggggagaaaactccagccaagggagttatcgggactgcactccccacccactctcagtttagcaagt--gggaaaagggg--ttaaaaatctagccttgt--ctcctggagttagatctcccattttcaaatccatcagcaagttttacttttctcaggttccaggagctgagcttctgtttcatgc-tgtggttgaccctgtagccagc---------------------------------------------------cagggcacc---------------------aaTTGT-------------------------------------
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60046230 759 -  91889043 agaaattataagcatatacaattttatattaattttatgtatgcatccagatacaagagccataaaatacaaaaccacttaaaa--aaaga---tccctttt-ttttttcttattgcaaatgtattcgaacactttgcaataaatttggcatttacagggttaacattatagctgccagaggagatcctag---------ctggaatgcaac-cctggccct--cttggggcc---tcactgaggctccaaag----agttgggctgaagaaaagaatttttttgcctcagtaaagctggggaaaagctttaccttatccaaagctttactccagccctgggaactgaca---agccttttttctcccttttgattgagagaggatcatgcactttgtaca---ttttcacccacccaag-ccacctttgggaatgtttgggcaccttttcctcccatttggaagaatgaacaaaaactggaggagttactagggctgtgctttttt-accccctcacgttagccagcaaggcaaaaagcagccaggggatctagcatgctgactcttggggttaaatagactattttaaaatccattcataaattttacttcttgcagctcatagc---tcaacttctgttttatacttgtggatgatttcacagcaatcaggaaccaaatattcatcatgctccacccctttattcttccttttactaaacagggcttttgcaatatttcagcaagttagagttgttctagagaatcctattgctgccatcCCtgtgccaggg
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e dasNov3.JH562051             429878 1635 +    563711 I
e otoGar3.GL873689             468148 969 +   3845361 I
e panPan2.chr15              74111279 6697 -  99763055 I

a score=359980.000000
s hg38.chr15_KI270851v1_alt    197722 46 +    263054 tctccaagaccacccccaggtttgatggttggccaggaggactcac
s panTro5.chr15               9584846 46 +  83230942 tctccaagaccacccccaggtttgatggttggccaggaggactcac
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       161624 45 -    281578 tctccaagacca-ccccaggtttgatggttggccaggaggactcac
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71021445 46 + 121039945 tctccaagaccacccccaggtttgatggttggccaggaggactcac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164331475 46 - 169600520 tctccaagaccacccccaggtttgatggttggccagcaggactcac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165652440 46 - 171882078 tctccaagaccacccccaggtttgatggttggccagcaggactcac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       506813 46 +   2379783 tctccaagaccacccccaggtttgatggttggccagcaggactcac
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       463985 46 +   4116138 tctccaagaccacccccaggtttgatggttggccagcaggactcaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53896266 46 +  58131712 tctccaagaccacccccaggtttgatggttggccagcaggactcaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       516738 46 -   3636681 tctccaagaccacccccaggtttgatggttggccagcgggactcaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       496002 46 -   4457520 tctccaagaccacccccaggtttgatggttggccagcaggactcac
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154527103 30 - 158406734 ----------------caagtttgatggttggccaggagaaccgac
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             358960 30 -   2682657 ----------------caagtttgatggttggccaggagaactcac
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       385187 30 -   2086007 ----------------caagtttgctggttggccaggagaactcac
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       446534 30 +   3831555 ----------------caagtttgatggttggccaggagaactcac
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60046989 45 -  91889043 tccctaagaccactcccagcttcagtgatttgtgaggaggcctca-
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             431513 45 +    563711 tctacaaggtcatctccagatgtgatgatttgt-aggagtactcag
i dasNov3.JH562051          I 1635 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e otoGar3.GL873689             468148 969 +   3845361 I
e panPan2.chr15              74111279 6697 -  99763055 I

a score=1456561.000000
s hg38.chr15_KI270851v1_alt    197768 167 +    263054 aagactcagcatgtagttgtactcagggctatagtttattacagtgaagggacacagagcaaaatcat------gaaaaaggacatgg-gtaaagtccagaggaaagcaggtacaag----ctt-------------ccacaggatc-----------------cacacaggacgagcttaactgccctggcaccgag---------ccgtgtcaag
s panTro5.chr15               9584892 167 +  83230942 aagactcagcatgtagttgtactcagggctatagtttattacagtgaaggcacacagagcaaaatcat------gaaaaaggacatgg-gtaaagtccagaggaaagcaggtacaag----ctt-------------ccacaggatc-----------------cacaaaggacgagcttaactgccccggcaccgag---------ccgtgtcaag
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       161669 146 -    281578 aagactcagcatgtagttgtactcagggctatagtttattacagtgaaggcacacagagcaaaatcat------gaaaaaggacatgg-gtaaagtcgagaggaaagcaggtacaag----ctt-------------ccacaggatc-----------------cacacaggatgagct------------------------------gtgtcagg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71021491 167 + 121039945 aagactcagcatgtagttgtactcagggctatagtttattacagtgaagggacacagagaaaaatcat------gaaaaaggacatgg-gtaaagtccagaggaaagcaggtacaag----ctt-------------ccacaggagc-----------------cacactggacgagcttaactgccccagcaccgag---------ccgtgtcagg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164331521 166 - 169600520 aagactcagcatgtagttgtactcagggct-cagtttattacagtgaagggacacagagcaaaatcat------gaagagggacatgg-gtaaaatccagaggaaagcaggtacaag----ctt-------------ccacaggagc-----------------cacacaggaggagcttaactgccctggcaccgag---------ctatgtcaag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165652486 166 - 171882078 aagactcagcatgtagttgtactcagggct-cagtttattacagtgaagggacacagagcaaaatcat------gaagagggacatgg-gtaaaatccagaggaaagcaggtacaag----ctt-------------ccacaggagc-----------------cacacaggaggagcttaactgccctggcaccgag---------ctatgtcaag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       506859 165 +   2379783 aagactcagcatgtagttgtactcagggct-cagtttattacagtgaagggacacagagcaaaatcat-------aagagggacatgg-gtaaaatccagaggaaagcaggtacaag----ctt-------------ccacaggagc-----------------cacacaggaggagcttaactgccctggcaccgag---------ctatgtcaag
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       464031 166 +   4116138 aagactcagcatgtagttgtactcagggct-cagtttattacagtgaagggacacagagcaaaatcat------gaagagggacatgg-gtaaaatccagaggaaagcaggtacaag----ctt-------------ccacaggagc-----------------cacacaggacgagcttaactgccctggcaccgag---------ctatgtcaag
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53896312 166 +  58131712 aagactcagcatgtagttgtactaagggct-cagtttattacagtgaagggacacagagcaaaatcat------gaagagggacatgg-gtaaaatccagaggaaagcaggtacaag----ctt-------------ccacaggagc-----------------cacacaggacgagcttaactgccctggcaccgag---------ctatgtcaag
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       516784 166 -   3636681 aagactcagcatgtagttgtactcagggct-cagtttattacagtgaagggacgcagagcaaaatcat------gaagagggacatgg-gtaaaatccagaggaaagcaggtacaag----ctt-------------ccacaggagc-----------------cacacaggacgagcttaactgccctggcaccgag---------ttatgtcaag
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       496048 166 -   4457520 aagactcagcatgtagttgtactcagggct-cagtttattacagtgaagggacacagagcaaaatcat------gaagagggacatgg-gtaaagtccagaggaaagcaggtacaag----ctt-------------ccacaggagc-----------------cacacaggatgagcttaactgccctggcaccgag---------ctatgtcaag
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154527133 144 - 158406734 aagactcagcatgtagctgtactcagggct---------------------acacagagcaaaatcgt------gaaaagggacatag-gtaaagtccagaagaaagcaggtacagg----ttt-------------ccacaagagc-------------------cacaggacgagcttcactcccctggcactgag---------ctgtgtcaag
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             358990 146 -   2682657 gagactcagcatgtagctgtactcagggct---------------------acacagagcaaaatcat------gaaaagggatatgg-gtaaagtccagaagaaagcaggtacaag----ttt-------------tcacaggagc-----------------cacacaggacgagcttcactcccccggcactgag---------ctgtgtcaag
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       385217 146 -   2086007 aagactcagcttgtagctgtactcagagct---------------------aCACAGAGCAAAATTAT------GAAAAGGGACATgg-gtaaagtccagaagaaagcaggtacaag----ttt-------------ccacaggagc-----------------cacacaggacaagcttcgctcccccggcactgag---------ctgtgtcaag
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       446564 146 +   3831555 aagactcagcatgtagctgtactcagggct---------------------acacagagcaaaatcat------gaaaagggacatgg-gtaaagtccagaagaaagcaggtacaag----ttt-------------ccacaggagc-----------------cacacaggacaagcttcactcccccggcactgag---------ctgtgtccag
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             469117 180 +   3845361 agaactcagcatgtggttgtgctcaagtctgtgattgataactgggaatagagac--agcaaaatcatcaaagggaaaaggcacatgg-gcaaagtct-ggggaagccaggcgcagg----cttccagagctttctcccagaggagt-----------------caca-aggacacact--aatcccccagcactgag---------ctgtggcaac
i otoGar3.GL873689          I 969 C 0
s canFam3.chr3               60047034 173 -  91889043 ------------gcagtcatactgaggcctaagattgattgcagtgaaagactagaaaccaaaatcagtgaagggaagaagcacatgg-gaaaagtctgggagaaa-ctgacctaagtcctctg-------------ctactggagt-----------------catacaggatgaacttgattctctcagcagagaaaatgactacatgggtgaaa
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             431558 187 +    563711 --agctcatcatatagtcatatacacagcttttgtttgttgcaataaaagaatataaaacaaaatcagcaaagggaaaaggctcatggagtgaagtctggggaaaactaggcgcaag----ctt-------------tca--ggagtcctctctcagtcgagttcacagaggatgcacttaattcccccacaagtgtg---------gcagtacata
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I
e panPan2.chr15              74111279 6697 -  99763055 I

a score=3045589.000000
s hg38.chr15_KI270851v1_alt    197935 292 +    263054 tgctgtctgcc-gg-gaagctgggtagagact-ccaggcccacggtttccatcaggactgatcacacgggcaccccctgcctggcgtgta--cc-aagttccagact-----aag----gaaagcaggttt-----c---------------------------------------------------------------agcacagacc------------------------------------------acattgttt----------------------gtacagacagttca-----------------------------------------------------------------------------------------------------------------------ggcacagggaaccacacctaccacctagggaat----gggggagccctcctgagatccagact--------ccagctgagggcc-agcctgc-agcaaccctgtctgaggttgt--atctcgggccagctg---tta--gctgtcttctgcacaGAACCATGA
s panTro5.chr15               9585059 292 +  83230942 tgctgtctgcc-gg-gaagctgggtagagact-ccaggcccagggtttccatcagggctgatcacacgggcaccccctgcctggcgtgta--cc-aagttccagaac-----aag----gaaagcaggttt-----c---------------------------------------------------------------agcacagacc------------------------------------------acattgttt----------------------gtacagacagctca-----------------------------------------------------------------------------------------------------------------------ggcacagggaaccacacctaccacctagggaat----gggggagccctcctgagatccagact--------ccagccgagggcc-agcctgc-agcaaccctgtctgaggttgt--atctcgggccagctg---tta--gctgtcttctgcgcaGAACCATGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74117976 292 -  99763055 TGCTGtctgcc-gg-gaagctgggtagagact-ccaggcccagggtttccatcagggctgatcacacgggcacccccttcctggcgtgta--cc-aagttccagaac-----aag----gaaagcaggttt-----c---------------------------------------------------------------agcacagacc------------------------------------------acattgttt----------------------gtacagacagttca-----------------------------------------------------------------------------------------------------------------------ggcacagggaaccacacctaccacctagggaat----gggggagccctcctgagatccagact--------ccagccgagggcc-agcctgc-agcaaccctgtctgaggttgt--atctcgggccagctg---tta--gctgtcttctgcgcaGAACCATGA
i panPan2.chr15             I 6697 C 0
s gorGor5.CYUI01000141v1       161815 292 -    281578 tgctgtctgcc-ag-gaagctggatagagact-ccaggcccagggtttccattagggctgatcacacgggcaccccctgcctggcacgta--cg-aagttccagaac-----aag----gaaagcaggttt-----c---------------------------------------------------------------agcacagacc------------------------------------------acattgttt----------------------gtacagacagttca-----------------------------------------------------------------------------------------------------------------------ggcacagggaaccacatctaccacctagggaat----gggagagccctcctgagatccagact--------ccagccgagggcc-agcctgc-agtaaccctgtctgaggttgt--atctcgggccagctg---tta--gctgtcttctgcacaGAACCATGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71021658 292 + 121039945 tgctgtctgcc-gg-gaagctgggtagagact-ccaggtccagggtttccatcagggctgatcacatgggcaccccctgcctggcgcgta--cc-aagttccagaac-----aag----gaaagcaggttt-----c---------------------------------------------------------------agcacagacc------------------------------------------acgttgttt----------------------gtacagacagttca-----------------------------------------------------------------------------------------------------------------------gaaacacggaaccacacctaccacctagggaat----gggggagccctcctgagatccagact--------tgagccgagggct-agcctgc-agcaatcctgtctgaggttgt--atctcgggccagctg---tta--gctgtcttctgcacaAAACCATGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164331687 292 - 169600520 tgctgtctgcc-gg-gaaactgggtagagatt-ccaggcccagggtttccatcaaggctgatcacatgggcaccccctgcctggcgcgta--cc-aagttccagacc-----aag----gaaagcaggttt-----c---------------------------------------------------------------agcacagacc------------------------------------------acgttgtct----------------------gtacagatagttga-----------------------------------------------------------------------------------------------------------------------ggcacagcaaaccatacctaccacctagggaat----gggggagccctcctgaaatccagact--------ccagccgagggct-agcctgc-agcagtcctgtctgatgtggt--atctctggctagctg---tta--gctgtcttctgcacaGAATCGTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165652652 292 - 171882078 tgctgtctgcc-gg-gaaactgggtagagatt-ccaggcccagggtttccatcaaggctgatcacatgggcaccccctgcctggcgcgta--cc-aagttccagacc-----aag----gaaagcaggttt-----c---------------------------------------------------------------agcacagacc------------------------------------------acgttgtct----------------------gtacagatagttga-----------------------------------------------------------------------------------------------------------------------ggcacagcaaaccatacctaccacctagggaat----gggggagccctcctgaaatccagact--------ccagccgagggct-agcctgc-agcagtcctgtctgatgtggt--atctctggctagctt---tta--gctgtcttctgcacaGAATCGTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       507024 292 +   2379783 tgctgtctgcc-gg-gaaactgggtagagatt-ccaggcccagggttcccatcaaggctgatcacatgggcaccccctgcctggcgcgta--cc-aagttccagacc-----aag----gaaagcaggttt-----c---------------------------------------------------------------agcacagacc------------------------------------------acgttgtct----------------------gtacagatagttga-----------------------------------------------------------------------------------------------------------------------ggcacagcaaaccacacctaccacctagggaat----gggggagccctcctgaaatccagact--------ccagccgagggct-agcctgc-agcagtcctgtctgatgtggt--atctctggctagctg---tta--gctgtcttctgcacaGAATCGTGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       464197 292 +   4116138 tgctgtctgcc-gg-gaaactgggtagagatt-ccaggcccagggtttccatcaaggctgatcacacgggcaccccctgcctggcgcgta--cc-aagttccagacc-----aag----gaaagcaggttt-----c---------------------------------------------------------------agcacagacc------------------------------------------acgttgtct----------------------gtacagacagttga-----------------------------------------------------------------------------------------------------------------------ggcacagcaaaccacacctaccacctagggaat----gggggagccctcctgaaatccatact--------ccagccgagggct-agcctgc-agcagtcctgtctgatgtggt--atctctggctagctg---tta--gctgtcttctgcacaGAATCGTGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53896478 292 +  58131712 tgctgtctgcc-gg-aaaactgggtagagatt-ccaagcccagggtttccatcaaggctgatcacacgggcaccccctgcctggcgcgta--cc-aagttccagacc-----aag----gaaagcaggttt-----c---------------------------------------------------------------agcacagacc------------------------------------------acgttgtct----------------------gtacagacagttga-----------------------------------------------------------------------------------------------------------------------ggcacagcaaaccacacctaccacctagggaat----gggggagccctcctgaaatccagact--------ccagccaagggct-agcctgc-agcagtcctgtctgatgtggt--atctctggctagctg---tta--gctgtcttctgcacaGAATCGTGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       516950 293 -   3636681 tgctgtctgcc-ag-gaaactgggtagagattgccaggcccagggtttccatcaaggctgatcacacgggcaccccctgcctggcgcgta--cc-aagttccagacc-----aag----gaaagcaggttt-----c---------------------------------------------------------------agcacagacc------------------------------------------acgttgtct----------------------gtacagacagttga-----------------------------------------------------------------------------------------------------------------------ggcacagcaaaccacacctaccacctagggaat----gggggagccctcctgaaatccagact--------ccagccgaaggct-agcctgc-agcagtcctgtctgatgtggt--atctctggctagctg---tca--gctgtcttctgcacaGAATCGTGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       496214 294 -   4457520 tgctgtctgcc-gg-gaaactgggtagagatt-ccaggcccagggtttccatcaaggctgatcacatgggcaccccctgcctggcgcgtg--cc-aagttccatacc-----aag----gaaagcaggtttcagcac---------------------------------------------------------------agcacaggcc------------------------------------------atgttgtct----------------------gtacagacagttga-----------------------------------------------------------------------------------------------------------------------ggcacagcaaaccacacctaccacctagggaat----gggggagccctcctgaaatccagact--------ccagtcgagggct-agcctgc-agcaatcctgtctgat---gt--atctctggctagctg---tta--gctgtcttctgcacaGAATCGTGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154527277 291 - 158406734 ggctgtcttcc-gg-gaagctgggtagaaact-ccaggcccagggtttctatcagggtggatcacacgggcatgccctgcctggtgcgta--cc-aagttccagacc-----aag----gaaagcaggttt-----c---------------------------------------------------------------agtacagacc------------------------------------------acgttgttt----------------------gtacagtcagttca-----------------------------------------------------------------------------------------------------------------------ggcatagtgaaccacacctaccacttagggaat----gggggagccctctggaaatgcagact----------agctgagggctgagcctgc-cgcagtcctgtctgaggttgt--atctcaggtcagctg---tta--gctgtcttctgcacaGAaccacga
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             359136 290 -   2682657 ggctgtcttcc-cg-gaagctgggtagaaact-ccaggcccagagtttctattggggctgatcacatgggcaccccgtgcctggcgcgta--cc-aagttccagacc-----agg----gaaagcaggttt-----c---------------------------------------------------------------agcacagacc------------------------------------------acgttgttt----------------------gtacagtcagttca-----------------------------------------------------------------------------------------------------------------------ggcacagtg-accacacctaccacttagggaat----gggggagccctccggaattccagact--------ccagctgagggctgagcctgc-tgcagccctgtc--gggttgt--atctcgggccagctg---tta--gctgtcttctgcacaGAaccacaa
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       385363 293 -   2086007 ggctgtctgcc-ag-gaagctgggtagagact-ccaggcccagggtttctatccgggctgatcacatgggcaccccctgcccggcgcgta--cc-aagttccagacc-----aag----gaaagcaggttt-----c---------------------------------------------------------------ggcacagacc------------------------------------------acgttgttt----------------------gtacagccagttca-----------------------------------------------------------------------------------------------------------------------ggcacagtgaaccgcacctaccacttagggaat----gggggagccctccggaaatccagact--------ccagctgagggccgcgcctgc-tgcagtcctgtctgaggttgt--gtctcaggccagctg---tta--gctgtcttctgcacaGAACCACGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       446710 293 +   3831555 ggcagtcttcc-gg-gaagctgggtaggaact-ccaggcccagggtttctatcggggctgatcacatgggcactccctacctggcgcgta--cc-aagttccagacc-----aag----gaaagcaggttt-----c---------------------------------------------------------------agcacagacc------------------------------------------acattgttt----------------------gtacagtcagttca-----------------------------------------------------------------------------------------------------------------------ggcatagtgaaccacacctaccacttagggaat----gggggagccctccggaaatccagact--------ccagctgagggctgagcctgc-tgcagtcctgtctgaggtttt--atctcaggccagctg---tta--gctgtcttctgcacaGAACCATGA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             469297 241 +   3845361 ----CCCTACC-GGAGAAGCTGGttaggggtg-----------ggt-----------------gcgcagacaccctctgcctggcaagta--cc-atgtgccagacc-----c-----------caggttc-----c---------------------------------------------------------------agcacagacc------------------------------------------tcactgtgt----------------------gtacagacagatga-----------------------------------------------------------------------------------------------------------------------ggcgcagtgagccacacttatcacctagggagc-----agagagcccccctgaaatccaggtt--------cc--caggtggct-ggcctgc------------cagagggcat--gtctcaggctggctg---tca--gttcttttgtgcacaGAACCATAA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60047207 308 -  91889043 ---tgtctacctgg-gaagttcatgagagact-ctgcgcctagagtttgcactggggcaggtcaagtaggcac-ctctgcctggcacataactc-aagttctagacc-----cagagaaagaagcaaattt-----c---------------------------------------------------------------agcagaaacc------------------------------------------acat----t----------------------gtacaaacagttta-----------------------------------------------------------------------------------------------------------------------ggcactgtgaggc-ctcttgtccattagggaatggtaggaggagcccttctgaaatccaagtttccagaggccagttaaggact-gccttgcaagcagtctttcctaaggatggcagtatcagacttgctattctta--gctcttttctTTGTGGTACTATAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             431745 520 +    563711 tgaaatggatc-ag-gatgctcattagggatg-cagtcaccagcgttttaatgggagctggtaacataggcaccctctgtctggcatgta--ccaaagttcccaactcccagaag----aaaagcaggtgt-----taatgcggtaattaagagttgcaggcaaataggatgaagctgttaaaggctgaaagaaaagataagcacataccttttgtagtgaatagaacacttagactttgtaccttgagataagattgttttaaattccttagactatgggtaatgctgatagttaatacctgttgcGTAGGCTATGTATCTATGCTTATTAGcacataggctacctatgcctgcttcttgcagaccccctgaaaaaaaaaaaagaaaagcaggtgtttatcacagtccactgtctaacaccatgagccatgcttctaagttagggagt----ggtgggaatc-ccaaaagtcttg-----------ctagccaagagtc-accttgc-ag-----------------gc--a-----ggcactttg---ctaaggacagcaTCTGCATAGTGCCATAA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13514187 5147 +  16154928 I

a score=1825229.000000
s hg38.chr15_KI270851v1_alt    198227 158 +    263054 TTAAAGTTTGTTAGTTTCCCACTGTTAGATATTTAGG--TAGTTA-T-CTTTGTTTTTCTAT--TAATAAA-AAA-TGTGATGAGGATCTTTCTAACTCAGTTATTTTGC-TTTTTT---------CAGGGGAGTAATTCCTAGAAGTAGAGAAAGTAGCTTTACTGAGCATTTTA
s panTro5.chr15               9585351 158 +  83230942 TTAAAGTTTGTTAGTTTCCCACTGTTAGATATTTAGG--TAGTTA-T-CTTTGTTTTTCTAT--TAATAAA-AAA-TGTGATGAGTATCTTTCTAACTCAGTTATTTTGC-TTTTTT---------CAGGGGAGTAATTCCTAGAAGTAGAGAAAGTAGCTTTACTGAGCATTTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74118268 159 -  99763055 TTAAAGTTTGTTAGTTTCCCACTGTTAGATATTTAGG--TAGTTATT-CTTTGTTTTTCTAT--TAATAAA-AAT-AGTGATGAGTATCTTTCTAACTCAGTTATTTTGC-TTTTTT---------CAGGGGAGTAATTCCTAGAAGTAGAGAGAGTAGCTTTACTGAGCATTTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       162107 158 -    281578 TTAAAGTTTGTTAGTTTCCCACTCTTAGATATTTAGG--TAGTTA-T-CTTTGTTTTTCTAT--TAATAAA-AAA-TGTGATGAATATCTTTCTAACTTAGTTATTTTGC-TTTTTT---------GGGGGGAGTAATTCCTAGAAGTAGAGAAAGTAGCTTTACTGAGCATTTTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71021950 129 + 121039945 TTAAAGTTTGTTAGTTTCCTACTGTTAGATATTTAGG--TAGTTA-T-C---------------------------------GAGCATCTTTCTAACTCAGTTATTTTGC-TTTTTT---------GGGGGGAATAATTCCTAGAAGTAGAGAAAGTAGCTTTACTGAGCATTTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164331979 159 - 169600520 TTAAAGTTTGTTAGTTTCTCACTGTTAGATATTTAAG--TAGTTA-T-GTTTGTTTTTCTTT--TAATAAA-AAATTGTGATGAGTATCTTTCTAACTCAGTTATTTTGC-TTTTTT---------CGGGGGAGTAATTCCTAGAAGTAGAGAAAGTAGCTTTACTGAGCATTTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165652944 159 - 171882078 TTAAAGTTTGTTAGTTTCTCACTGTTAGATATTTAAG--TAGTTA-T-GTTTGTTTTTCTTT--TAATAAA-AAATTGTGATGAGTATCTTTCTAACTCAGTTATTTTGC-TTTTTT---------CGGGGGAGTAATTCCTAGAAGTAGAGAAAGTAGCTTTACTGAGCATTTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       507316 159 +   2379783 TTAAAGTTTGTTAGTTTCTCACTGTTAGATATTTAAG--TAGTTA-T-GTTTGTTTTTCTTT--TAATAAA-AAATTGTGATGAGTATCTTTCTAACTCAGTTATTTTGC-TTTTTT---------CGGGGGAGTAATTCCTAGAAATAGAGAAAGTAGCTTTACTGAGCATTTTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       464489 159 +   4116138 TTAAAGTTTGTTAGTTTCTCACTGTTAGATATTTAAG--TAGTTA-T-GTTTGTTTTTCTAT--TAATAAA-AAAATGTGATGAGTATCTTTCTAACTCAGTTATTTTGC-TTTTTT---------CGGGGGAGTAATTCCTAGAAGTAGAGAAAGTAGCTTTACTGAGCATTTTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53896770 159 +  58131712 TTAAAGTTTGTTAGTTTCCCACTGTTAGATATTTAAG--TAGTTA-T-GTTTGTTTTTCTAT--TAATAAA-AAAATGTGATGAGTATCTTTCTAACTCAGTTATTTTGC-TTTTTT---------CGGGGGAGTAACTCCTAGATGTAGAGAAAGTAGCTTTACTGAGCATTTTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       517243 159 -   3636681 TTAAAGTTTGTTAGTTTCTCACTGTTAGATATTTAAG--TAGTTA-T-GTTTGTTTTTCTAT--TAATAAA-AAAATGTGATGAGTATCTTTCTAACTCAGTTATTTTGC-TTTTTT---------CGGGGGAGTAATTCCTAGAAGTAGAGAAAGTAGCTTTACTGAGCATTTTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       496508 159 -   4457520 TTAAAGTTTGTTAGCTTCCCACTGTTAGATATTTAAG--TAATTA-T-GTTTGTTTTTCTAT--TAATAAA-AAAATGTGATGAGTATCTTTCTAACTCAGTTATTTTGC-TTTTTT---------CCGGAGAGTAATTCCTAGAAGTAGAGAAAGTAGCTTTACTGAGCATTTTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154527568 159 - 158406734 ttaaagtttgataatttcccactgttagatatttagg--tagtta-t-ttttgtttttctat--taataaa-aaa-tatgatgagtatctttctaactcatttatgttgcttttttt---------agggggagtccttcctagaagtagagaaagtagcttttctgagcatttta
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             359426 158 -   2682657 ttaaagtttgataatttcccactgttagatatttagg--tagtta-t-ttttgtttttctat--tagtaaa-aaa-tacgatgagtatctttctaactcatttatgttgc-tttttt---------agggggagtccttcctagaagtagaGAAAGTAGCTTTTCTGAGCATTTTA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       385656 158 -   2086007 TTAAAGTTTGATAATTTCCCACTGTTAGATATTTAGG--TAGTTA-T-TTTTGTTTTTCTAT--TAATAAA-AAA-TATGATGAGTATCTTTCTAACTCATTTATGTTGC-TTTTTT---------AGGGGGAGTCCTTCCTAGAAATAGAGAAAGTAGCTTTTCTGAGCATTTTA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       447003 159 +   3831555 TTAAAGTTTGATAATTTCCCACTGTTAGATATTCAGG--TAGTTA-T-TTTTATTTTTCTAT--TAATAAAGAAA-TATGATGAGTATCTTTCTAACTCATTTATGTTGC-TTTTTT---------AGGGGGAGTCCTTCCTAGAAGTAGAGAAAGTAGCTTTTCTGAGCATTTTA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13519334 158 +  16154928 TTAATGTTTGTTAATTTCCCATTGTTAGACATTTAGGG-TGGTTA-T-CTTTGTTTTTCTAT--TATAAAA-AA--TGTGATGAGTATCTTCCTAACTTACTCATTTTGT-TCTTTC---------AGAGGAAATAGTTCCTAGAAGTAGAGCAAATACCTTTTCTGAGCATTTTA
i proCoq1.NW_012148396v1    I 5147 I 184
s otoGar3.GL873689             469538 158 +   3845361 TTAAAGTTTGTTAATTT-CCATTATTAGACGTTTAGGGTTGGTTATT-TTTTATTTTTCTAT--TATTAAA-GA--TATGGTGAGCATCTTGCTAACTTAATCATTTTGT-TCTTTC---------AGAGGGACTACTCCCTAGAAGTAGAGCCAATACC-TTTCTGAGCATTTTT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60047515 162 -  91889043 TTAAAGTTGGTAAGTTTCTCATTGTCA-ACAGACAGG--TGGtta-tattttgtttttatattctaataaa-aatatatGATGAGTGTTTTTCTAACTTAATCATTTTGC-TTTTTTTTTTGGAGAGGGGAGCATAATTACTAGAAGTAGAGTAAATGTCTCT-------GTTTT-
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             432265  76 +    563711 TTAAATTTTGTTAATTTCCCATTGTTAGACATTTGGG--TAGTGA-T-ATTT---------T--GAATAAA-TAGCTTTTCTGAGCACTTGT------------------------------------------------------------------------------------
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I

a score=1597020.000000
s hg38.chr15_KI270851v1_alt    198385 171 +    263054 ATATCTTTTATATCTTCCTA-GGATATTTATG-TATTTCATCCTTCCGTTTATCTTCTTTTTATCCTAT-----AT----CAGTAAAATATTCATAAT----ATTAT-----ATTGATAA--------AACATATAGTATGGATTGTTCAAAATTACGAT--CTTCATTAGTACTTTGTGAATGTTT---TGT--GTGTATT---AAGG---
s panTro5.chr15               9585509 171 +  83230942 ATATCTTTTATATCTTCCTA-GGATATTTATG-TATTTCATCCTTCCGTTTATCTTCTTTTTATCCTAT-----AT----CAGTAAAATATTCATAGT----ATTAT-----ATTGATAA--------AACATATAGTATGGATTCTTCAAAATTACGAT--CTTCATTAGTACTTTGTGAATGTTT---TGT--GTGTATT---AAGG---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74118427 170 -  99763055 ATATCTTTTATATCTTCCTA-GGATATTTATG-TATTTCATCCTTCCGTTTATCTTC-TTTTATCCTGT-----AT----CAGTAAAATATTCATAAT----ATTAT-----ATTGATAA--------AACATATAGTATGGATTGTTCAAAATTACGAT--CTTCATTAGTACTTTGTGAATGTTT---TGT--GTGTATT---AAGG---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       162265 170 -    281578 ATATCTTTTATATCTTCCTA-GGATATTTATC-TATTTCGTCCTTCCGTTTATCTTC-TTTTATCCTAT-----AT----CAGTAAAATATTCATAAT----ATTAT-----ATTGATAA--------GACATATAGTATGGATTGTTCAAAATTATGAT--CTTCATTAGTGCTTTGTGAATGTTT---TGT--GTGTATT---AAGG---
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71022079 175 + 121039945 ATATCTTTTATATCTTCTTA-GCCTATTTATG-TATTTCGTCCTTCCGTTTATCTTCTTTTTATCCTAT-----AT----CAGTAAAATATTCATAGT----ATTATATTA-ATTGATCA--------AACACATAGTATGGATTCTTCAAAATTATGAT--CTTCATTAGTACTTTTTAAATGTTT---TGT--GTGTATT---AAGG---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164332138 172 - 169600520 ATATCTTTTGTATCTTCTTG-GCATATTTATG-TATTTCGTCCTTCCATTTATCTTGGGTTTATCCTAT-----AT----CAGTAAAATATTCATGGT----ATTATATTA-ATTGATAA--------AACCTATAGTATGGATTTTTCAAAATTATGA-----TCATTAGTACTTTTGAAATGTTT---TGT--GTGTATT---AAGG---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165653103 172 - 171882078 ATATCTTTTGTATCTTCTTG-GCATATTTATG-TATTTCGTCCTTCCATTTATCTTGGGTTTATCCTAT-----AT----CAGTAAAATATTCATGGT----ATTATATTA-ATTGATAA--------AACCTATAGTATGGATTTTTCAAAATTATGA-----TCATTAGTACTTTTGAAATGTTT---TGT--GTGTATT---AAGG---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       507475 172 +   2379783 ATATCTTTTGTATCTTCTTG-GCATATTTATG-TATTTCGTCCTTCCATTTATCTTGGGTTTATCCTAT-----AT----CAGTAAAATATTCATGGT----ATTATATTA-ATTGATAA--------AACCTATAGTATGGATTTTTCAAAATTATGA-----TCATTAGTACTTTTGAAATGTTT---TGT--GTGTATT---AAGG---
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       464648 172 +   4116138 ATATCTTTTGTATCTTCTTG-GCATATTTATG-TATTTCGTCCTTCCATTTATCTTGGGTTTATCCTGT-----AT----CAGTAAAATATTCATGGT----ATTATATTA-ATTGATAA--------AACCTATAGTATGGATTTTTCAAAATTATGA-----TCATTAGTACTTTTGAAATGTTT---TGT--GTGTATT---AAGG---
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53896929 173 +  58131712 ATATCTTTTGTATCTTCTTG-GCATATTTATGTTATTTCGTCCTTCCATTTATCTTCGGTTTATCCTAT-----AT----CAGTAAAATATTCACGGT----ATTACATTA-ATTGATAA--------AACCTATAGTATGGATTTTTCAAAATTATGA-----TCATTAGTACTTTTGAAATGTTT---TGT--GTGTATT---AAAG---
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       517402 172 -   3636681 ATATCTTTTGTATCTTCTTG-GCATATTTATG-TATTTCGTCCTTCCATTTATCTTGGGTTTATCCTAT-----AT----CAGTAAAATATTCATGGT----ATTATATTA-ATTGATAA--------AACCTATAGTATGGATTTTTCAAAATTATGA-----TCATTAGTACTTTTGAAATGTTT---TGT--GTGTATT---AAGG---
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       496667 167 -   4457520 ATATCTTTTGTATCTTCTTG-GCATATTTATG-TATTTTGTCCTTCCATTTATCTTCGTTTTATCCTAT-----AT----CAGTAAAATATTCACAGT---------ATTA-ATTGATAA--------AACCTATAGTATGGATTTTTCAAAATTATGA-----TCATTAGTACTTTTGAAATGTTT---TGT--GTGTATT---AAGG---
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154527727 180 - 158406734 atatcttttaaatcttctta-atatatttaag-tattttgcccttcCCTTTACCTTCTTTTTATCCTGT-----ATCA--CAGTGAAATATTCACCGT----ATTATATTA-GTTGATAA--------AACATATAGTATGGATTCTTTTAACTTATGAT--CTTCATTAGTACTTTTTAAATGTTG---CAT--GTATATTAGGAAGG---
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             359584 178 -   2682657 ATATCTTTTATATCTTCTTA-ATATATTTGAG-TATTTTGTCCTGCCTTTTACCTTCTTTTTATCATAT-----AT----CAGTAAAATATTCACAGC----ATTGTATTA-GTTGATAA--------AACATATAGTATGGATTCTTTAAAATTACGAT--CTTCATTAGTCCTTTTTAAATGTTG---CAT--GTATATTAGGAAGG---
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       385814 179 -   2086007 ATATCTTTTATATCTTCTTA-ATATATTT-AG-TATTTTGTCCTTCCTTTTACTTTCTTTTTATCGTAT-----ATCA--CAGTAAAATATTCACAGT----ATTGTATTA-GTTGATAA--------AACATATAGTATGGATTCTTTAAAATTATGAT--CGTCATTAGTACTTTTTAAATGTTG---CAT--GTATATTAGGAAGG---
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       447162 180 +   3831555 ATATCTTTTTTGTCTTCTTA-ATATATTTAAG-TATTTTGTCCTTCCCTTTACCTTCTTTTTATCCTAT-----ATCA--CAGTAAAATGTTCACAGT----ATTGTATTA-GTTGATAA--------AACATATAGTATGGATTCTTTAAAATTATTAT--CTTCATTAGTACTTTTTAAATGTTG---CAT--GTGTGTTAGGAAGG---
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             469696 177 +   3845361 ---------ATATCTTTTGA-ACATATTTATA-TATTTTTTCTTTCCCATTACCTTCTCTGTGTTCTAGACAGAAT----CAGTAAGATTTTCACAGTGCTTATTATACTA-ATTCATAA--------AAGATATACTATGGATTTATTACAGTTATTATTACTTCATCAACACTGGCAGATTTGTG---CGT--GTGTGCA---ATAG---
i otoGar3.GL873689          C 0 I 5
s canFam3.chr3               60047677 177 -  91889043 ATATCTTTTATATCTTCTGATACGTATTTATA-TGCTTGGTTCTT----TTACATT--TTTAAATTCCC-----AT----TAATAAATCTTTCATGGT----ATT-TATTATATTGATAAAGTACTACAGTATACACTATAGGTTCTTTAAAACTGTCA-----TCATCAGTACTTACTAAGTTTTG---AATAAGTGTATT---AAGA---
i canFam3.chr3              C 0 I 3
s dasNov3.JH562051             432341 166 +    563711 ------------------TT-ATCTGTTT-TG-TATTTTGTCTTTAACCTT---TTTTGTTAATCCTAG-----ATCAATCATTATATTTTTTTCAGTGTTTATTGTATTA-ATTGATAA--------ACCATACACTTTGGATTCTTTAAAATTATTT---CTTTTTCAGTACTTGTTGATTTTTTTTGTGT--GTGTATT---TAAAATA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I
e micMur3.chr9              116297179 6178 + 116334831 I
e proCoq1.NW_012148396v1     13519492 184 +  16154928 I

a score=268136.000000
s hg38.chr15_KI270851v1_alt    198556 18 +    263054 GGACACTGTAGCTACTTG
s panTro5.chr15               9585680 18 +  83230942 GGACACTGTAGCTACTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74118597 18 -  99763055 GGACACTGTAGCTACTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       162435 18 -    281578 GGACACTGTAGCTACTTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71022254 18 + 121039945 GGACATTGTAGCTACTTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164332310 18 - 169600520 GGGCATTGTAGCTACTTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165653275 18 - 171882078 GGGCATTGTAGCTACTTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       507647 18 +   2379783 AGGCATTGTAGCTACTTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       464820 18 +   4116138 GGGCATTGTAGCTACTTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53897102 18 +  58131712 GGGCATTGTAGCTACTTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       517574 18 -   3636681 GGGCATTGTAGCTACTTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       496834 18 -   4457520 GGACCCTGTAGCTACTTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154527907 18 - 158406734 GGACGTTGTAGCTACCTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             359762 18 -   2682657 GGACATTGTAGCTACCTG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       385993 18 -   2086007 GGACATTGTAGCTACCTG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       447342 18 +   3831555 GGACATTGTAGCTACCTG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116303357 18 + 116334831 GGACATCGTAGCTACTTA
i micMur3.chr9              I 6178 C 0
s proCoq1.NW_012148396v1     13519676 18 +  16154928 GGACATTGTAGCTACTTA
i proCoq1.NW_012148396v1    I 184 C 0
s otoGar3.GL873689             469878 18 +   3845361 GGGTTTTGCAGACGCCCA
i otoGar3.GL873689          I 5 C 0
s canFam3.chr3               60047857 18 -  91889043 GGAAATTGTAACTACTTA
i canFam3.chr3              I 3 C 0
s dasNov3.JH562051             432507 18 +    563711 GGAAATTGTAGCAATTTA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56141040 4692 + 145441459 I

a score=4569933.000000
s hg38.chr15_KI270851v1_alt    198574 245 +    263054 TTGGCTCAGCTATTGTTTTTGACGCTCCGTCAGGCCCCAGTTGTGACAGCGTTGAGGAAGATATGAATGCTTCTGCCCAAGGTGCTTCTGCCACAGTTTTGGAAGAAACAAGGAAGGAAACGGCTCCTGTGCAGCTCCCTGTTTCAGGGCCAGAACTGGCTGCCATGATGAAGATTGGAACAAGGGTCATGAGAGGTGTGGACTGGAAATGGGGCGATCAGGTACTCAGAGATTTGATG-TGAACA
s panTro5.chr15               9585698 245 +  83230942 TTGGCTCAGCTATTGTTTTTGACGCTCCGTCAGGCCCCAGTTGTGACAACATTGAGGAAGATATGAATGCTTCTGCTCAAGGTGCTTCTGCCACAGTTTTGGAAGAAACAAGGAAGGAAACGGCTCCTGTGCAGCTCCCTGTTTCAGGGCCAGAACTGGCTGCCATGATGAAGATTGGAACAAGGGTCATGAGAGGTGTGGACTGGAAATGGGGCGATCAGGTACTCAGAGATTTGATG-TGAACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74118615 245 -  99763055 TTGGCTCAGCTATTGTTTTTGACGCTCCGTCAGGCCCCAGTTGTGACAACGTTGAGGAAGATATGAATGCTTCTGCTCAAGGTGCTTCTGCCACAGTTTTGGAAGAAACAAGGAAGGAAACGGCTCCTGTGCAGCTCCCTGTTTCAGGGCCAGAACTGGCTGCCATGATGAAGATTGGAACAAGGGTCATGAGAGGTGTGGACTGGAAATGGGGCGATCAGGTACTCAGAGATTTGATG-TGAACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       162453 245 -    281578 TTGGCTCAGCTATTGTTTTTGATGCTCCATCAGGCCCCAGTTGTGACAACGTTGAGGAAGATATGAATGCTTCTGCTCAAGGTGCTTCTGCCACAGTTTTGGAAGAAACAAGGAAGGAAACGGCTCCTGTGCAGCTCCCTGTTTCAGGGCCAGAACTGGCTGCCATGATGAAGATTGGAACAAGGGTCATGAGAGGTGTGGACTGGAAATGGGGCGATCAGGTACTCAGAGATTTGATG-TGAACA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71022272 245 + 121039945 TTGGCTCAGCTATTGTTTTTGACGCTCTGTCAGGCCCCACTTGTGACAATGTTGAGGAAGATATGAATGCTTCTGCTCAAGGTGCTTCTGCCACAGTTTTGGAAGAAACAAGGAAGGAAACGGCTCCTGTGCAGCTCCCTGTTTCAGGGCCAGAACTGGCTGCCATGATGAAGATCGGAACAAGGGTCATGAGAGGTGTGGACTGGAAATGGGGCGATCAGGTACTCAGAGATTTGATG-TGAACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164332328 245 - 169600520 TTGGCTCAGCTGCTGTTTTTGACGCTCTGTCAGGCCCCAGTTGTGACAACGTTGAGGAAGATATGAATGCTTCTGCTCAAGGTGCTTCTGCCACAGTTTTGGAAGAAACAAGGAAGGAAACGGCTCCTGTGCAGCTCCCTGTTTCAGGGCCAGAGCTGGCTGCCATGATGAAGATTGGAACGAGGGTCATGAGAGGTGTGGACTGGAAATGGGGCGATCAGGTACTCAGAGATTTGATG-TGAACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165653293 245 - 171882078 TTGGCTCAGCTGCTGTTTTTGACGCTCTGTCAGGCCCCAGTTGTGACAACGTTGAGGAAGATATGAATGCTTCTGCTCAAGGTGCTTCTGCCACAGTTTTGGAAGAAACAAGGAAGGAAACGGCTCCTGTGCAGCTCCCTGTTTCAGGGCCAGAGCTGGCTGCCATGATGAAGATTGGAACGAGGGTCATGAGAGGTGTGGACTGGAAATGGGGCGATCAGGTACTCAGAGATTTGATG-TGAACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       507665 245 +   2379783 TTGGCTCAGCTGCTGTTTTTGACGCTCTGTCAGGCCCCAGTTGTGACAACGTTGAGGAAGATATGAATGCTTCTGCTCAAGGTGCTTCTGCCACAGTTTTGGAAGAAACAAGGAAGGAAACGGCTCCTGTGCAGCTCCCTGTTTCAGGGCCAGAGCTGGCTGCCATGATGAAGATTGGAACGAGGGTCATGAGAGGTGTGGACTGGAAATGGGGCGATCAGGTACTCAGAGATTTGATG-TGAACA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       464838 245 +   4116138 TTGGCTCAGCTGCTGTTTTTGACGCTCTGTCAGGCCCCAGTTGTGACAACGTTGAGGAAGATATGAATGCTTCTGCTCAAGGTGCTTCTGCCACAGTTTTGGAAGAAACAAGGAAGGAAACGGCTCCTGTGCAGCTCCCTGTTTCAGGGCCAGAGCTGGCTGCCATGATGAAGATTGGAACGAGGGTCATGAGAGGTGTGGACTGGAAATGGGGCGATCAGGTACTCAGAGATTTGATG-TGAACA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53897120 245 +  58131712 TTGGCTCAGCTGCTGTTTTTGACGCTCTGTCAGGCCCCAGTTGTGACAACGTTGAGGAAGATATGAATGCTTCTGCTCAAGGTGCTTCTGCCACAGTTTTGGAAGAAACAAGGAAGGAAACGGCTCCTGTGCAGCTCCCTGTTTCAGGGCCAGAGCTGGCTGCCATGATGAAGATTGGAACGAGGGTCATGAGAGGTGTGGACTGGAAATGGGGCGATCAGGTACTCAGAGATTTGATG-TGAACA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       517592 245 -   3636681 TTGGCTCAGCTGCTGTTTTTGACGCTCTGTCAGGCCCCAGTTGTGACAACGTTGAGGAAGATATGAATGCTTCTGCTCAAGGTGCTTCTGCCACAGTTTTGGAAGAAACGAGGAAGGAAACGGCTCCTGTGCAGCTCCCCGTTTCAGGGCCAGAGCTGGCTGCCATGATGAAGATTGGAACGAGGGTCATGAGAGGTGTGGACTGGAAATGGGGCGATCAGGTACTCAGAGATTTGATG-TGAACA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       496852 244 -   4457520 TTGGCTCAG-TGCTGTTTTTGACGCTCTGTCAGGCCCCAGTTGTGACAATGTTGAGGAAGATATGAATGCTTCTGCTCAAGGTGCTTCTGCCACAGTTTTGGAAGAAACAAGGAAGGAAACGGCTCCTGTGCAGCTCCCTGTTTCAGGGCCAGAGCTGGCTGCCATGATGAAGATTGGAACGAGGGTCATGAGAGGTGTGGACTGGAAATGGGGCGATCAGGTACTCAGCGATTTGATG-TGAACA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154527925 245 - 158406734 TTGGCTCAGCTGTTGTTTTTGACACTTTGTCAGGTCCCAGTTGTGACAATGTTGAGGAAGATATGAATGCTTCTGCTCAGGGTGCTTCAGCCACAGTTTTGGAAGAAACAAGGAAGGAAACAGCTCCTGTGCAGCTCCCTGTTTCGGGGCCAGAACTGGCTGCCATGATGAAGATTGGAACAAGGGTCATGAGAGGTGTGGACTGGAAATGGGGCGATCAGGTACTCAGAGATTTGATG-TGAACA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             359780 245 -   2682657 TTGGCTCAGCTGCTGTTTTTGACACTTTGTCAGGTCCCAGCTGTGACAATGTTGAGGAGGATATGAATGCTTCTGCTCAAGGTGCTTCTGCCACAGTTTTGGAAGAAACAAGGAAGGAAACAGCTCCTGTGCAGCTCCCGGTTTCAGGGCCAGAACTGGCCGCCATGATGAAGATTGGAACAAGGGTCATGAGAGGTGTGGACTGGAAATGGGGCGATCAGGTACTCAGAGATTTGATG-TGAACA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       386011 245 -   2086007 TTGGCTCAGCTGCTGTTTTTGACGCTTTGTCAGGTCCCAGTTGTGACAATGTTGAGGAGGATATAAATGCTTCTGCTCAAGGTGCTTCTGCCACAGTTTTGGAAGAAACAAGGAAGGAAACAGCTCCTGTGCAGCTCCCTGTTTCAGGGCCAGAACTGGCTGCCATGATGAAGATCGGAACAAGGGTCATGAGAGGTGTGGACTGGAAATGGGGCGATCAGGTACTCAGAGATTTGATG-TGAACA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       447360 242 +   3831555 TTGGCTCAGC---TGTTTGTGACGCTTTGTCAGGTCCCAGTTGTGACAATGTTGAGGAAGATATGAATGCTTCTGCTCAAGGTGCTTCTGCCACAGTTTTGGAAGAAACAAGGAAGGAAACAGCTCCTGTGCAGCTCCCTGTTTCAGGGCCAGAACTGGCTGCCATGATGAAGATTGGAACAAGGGTCATGAGAGGTGTGGACTGGAAATGGGGCGATCAGGTACTCAGAGATTTGATG-TGAACA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116303375 245 + 116334831 TTGACTCAGCTGTTATTTTTGCTGTGCTGACAGGTCCGAGTTGTGACAATGTTGAGGAAGATATGAATGCTTCTGCACGAGGAGCCTCTGCCACAGTTTTGGAAGAAACAAGGAAGGAAACGACTCCTGTGCAACTCCCTGTTTCAGGGCCAGAATTGGCTGCCATGATGAAAATTGGGACCAGGGTCATGAGAGGTGTGGACTGGAAATGGGGTGATCAGGTACTCAGCGATTTGATT-TGAACA
i micMur3.chr9              C 0 I 165
s proCoq1.NW_012148396v1     13519694 245 +  16154928 TTGGCTCAGCTGTTGTTTTTGCTGTGCTGACAGGTCCCAGTTGTGACAATGTTGAGGAAGATATGAATGCTTCTGCACGAGGAGCCTCTGCCACAGTTTTGGAAGAAACAAGGAAGGAAACGACTCCTGTGCAGCTCCCTGTCTCAGGACCAGAACTGGCTGCCATGATGAAGATTGGGACCAGGGTCATGAGAGGTGTGGACTGGAAATGGGGCGATCAGGTACTCAGAGATTTGATT-CGAACA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             469896 244 +   3845361 CCTGCTCAGCTGTTGTTGTGGCTATGCCGACAGGTCCCAGCTGTGACAGTGTTGAGGAAGATACGAACACTTCCTCACGAGGAGCCTCCGCCACAGTCTTGGAGGAGACGAGGAAGGAGACAGCTCCTGCGCAGCTCCCTGTCTCGGGGCCAGAACTGGCTGCTATGATGAAGATTGGGACCAGGGTCATGAGAGGTGTAGACTGGAAGTGGGGCGATCAGGTACTCA-AGACTCGATT-CAAGTG
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56145732 241 + 145441459 tCGTCTTAGCTGTTGTT--TGATGTTCTGACAGGTCCTACTTGTGACAGTGTTGAGGACGACATGAATGCGTCTGCCCGGGGAGCCTCTGCTACAGTGTTGGAAGAAACAAGGAAGGAAACGGCTCCTGTTCAGCTCCCTGTTTCAGGGCCAGAACTGGCTGCTATGATGAAGATTGGAACCAGGGTCATGAGAGGGGTGGATTGGAAGTGGGGTGACCAGGTATTCAGAGATTTCACT---AACA
i mm10.chr7                 I 4692 C 0
s canFam3.chr3               60047875 244 -  91889043 CTAGCTCAGCTGTTGCATTTGATGATCTGATAGGTCCTAGTTGTGATAATGTTGAAGAGGATATGAATGCTTCTGCCCGAGGAGCTTCTGCTACAGTTTTGGAAGAGACAAGGAAGGAAATGGCTCCTGTGCAGCTTCCAGTTTCAGGGCCAGAACTGGCCGCCATGATGAAGATTGGAACCAGGGTCATGAGAGGTGTTGATTGGAAATGGGGTGATCAGGTACTCA--GATTTGATTTTAAACA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             432525 232 +    563711 TTGGCTCAACTGTTATGTTCGATGCTCTGATAGGCCCAAGTTCTGACAATGCTGAAGAAGACATGAATGCTTCTGCCCGCGGCGCTTCAGCTACGGTTTTGGAAGAAACAAGAAAGGAGACAACTCACGTGCAGCTGCCTGTCTCGGGCCCAGAGCTGGCAGCCATGATGAAAATCGGGACCCGGGTCATGAGGGGCGTGGACTGGAAGTGGGGTGATCAGGTACTCA--GACT------------
i dasNov3.JH562051          C 0 C 0

a score=71358.000000
s hg38.chr15_KI270851v1_alt    198819 5 +    263054 CATTA
s panTro5.chr15               9585943 5 +  83230942 CATTA
i panTro5.chr15             C 0 I 1303
s panPan2.chr15              74118860 5 -  99763055 CATTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       162698 5 -    281578 CATTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71022517 5 + 121039945 CATTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164332573 5 - 169600520 CATTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165653538 5 - 171882078 CATTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       507910 5 +   2379783 CATTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465083 5 +   4116138 CATTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53897365 5 +  58131712 CATTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       517837 5 -   3636681 CATTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497096 5 -   4457520 CATTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154528170 5 - 158406734 CGTTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360025 5 -   2682657 CATTA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       386256 5 -   2086007 CTTTA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       447602 5 +   3831555 CATTA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13519939 5 +  16154928 TATTA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             470140 5 +   3845361 CGCTA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56145973 5 + 145441459 TCTTA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60048119 5 -  91889043 CATTA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             432757 5 +    563711 CAGCA
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116303620 165 + 116334831 I

a score=73726.000000
s hg38.chr15_KI270851v1_alt    198824 5 +    263054 GCCAC
s panPan2.chr15              74118865 5 -  99763055 GCCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       162703 5 -    281578 GCCAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71022522 5 + 121039945 GCCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164332578 5 - 169600520 GCCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165653543 5 - 171882078 GCCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       507915 5 +   2379783 GCCAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465088 5 +   4116138 GCCAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53897370 5 +  58131712 GCCAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       517842 5 -   3636681 GCCAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497101 5 -   4457520 GCCAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154528175 5 - 158406734 GCCAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360030 5 -   2682657 GCCAC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       386261 5 -   2086007 GCCAC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       447607 5 +   3831555 GCCAC
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13519944 5 +  16154928 GTCAC
i proCoq1.NW_012148396v1    C 0 I 157
s otoGar3.GL873689             470145 5 +   3845361 GTCAC
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56145978 2 + 145441459 GC---
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60048124 5 -  91889043 GCCAC
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             432762 5 +    563711 GCCAC
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116303620 165 + 116334831 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=785146.000000
s hg38.chr15_KI270851v1_alt    198829 105 +    263054 ACATTAGTTATCTTCTGCA----TA----GTTCTGTACGATATTGGTGGGTGGAAATTGGAATA-------------ATCCA---GGATGTGT-CAGTTGATCGATGACACAGG--------T---------GTTGGTTCCCGAGCA
s panPan2.chr15              74118870 105 -  99763055 ACATTAGTTATCTTCTGCA----CA----GTTCTGTACGATATTGGTGGGTGGAAATTGGAATA-------------ATCCA---GGATGTGT-CAGTTGATCGATGACACAGG--------T---------GTTGGTTCCCAAGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       162708 105 -    281578 ACATTAGTTATCTTCTGCA----CA----GTTCTGTACGATATCGGTGGGTGGAAATTGGAATA-------------ATCCA---GGATGTGT-CAGTTAATCGATGACACAGG--------T---------GTTGGTTCCTGAGCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71022527 105 + 121039945 ACATTAGTTATCTTCTGCA----CA----GGTCTGTGCAATATTGGTGGGTGAAAATTGGAATA-------------ATCCA---GGATGTGT-CGGTTGATCGATGACACAGG--------T---------GTTGGTTCCCGAGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164332583 106 - 169600520 ACGTCAGTTATCTTCTGCA----CA----GTTCTGTACGATATTGGTGGGTGGAAATTGGAATA-------------ACCCG---GAACGTGTGTGGTTGTTAGATGACACAGT--------T---------ACTGATTCCCAAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165653548 106 - 171882078 ACGTCAGTTATCTTCTGCA----CA----GTTCTGTACGATATTGGTGGGTGGAAATTGGAATA-------------ACCCG---GAACGTGTGTGGTTGTTAGATGACACAGT--------T---------ACTGATTCCCAAGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       507920 106 +   2379783 ACGTCAGTTATCTTCTGCA----CA----GTTCTGTACGATATTGGTGGGTGGAAATTGGAATA-------------ACCCG---GAACGTGTGTGGTTGTTAGATGACACAGT--------T---------ACTGATTCCCAAGCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465093 106 +   4116138 ACGTCAGTTATCTTCTGCA----CA----GTTCTGTACGATATTGGTGGGTGGAAATTGGAATA-------------ACCCG---GAACGTGTGTGGTTGTTAGATGACACAGT--------T---------ACTGATTCCCAAGCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53897375 106 +  58131712 ACGTCAGTTATCTTCTGCA----CA----GTTCTGTACGATATTGGTGGGTGGAAATTGGAATA-------------ACCTG---GAATGTGTGCGGTTGTTAGATGACACAGT--------T---------ACTAATTCCCAAGCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       517847 106 -   3636681 ACGTCAGTTATCTTCTGCA----CA----GTTCTGTACGATATTGGTGGGTGGAAATTGGAATA-------------ACCCG---GAACGTGTGTGGTTGTTAGATGACACAGT--------T---------ACTGATTCCCAAGCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497106 109 -   4457520 ACGTTA-TTATCTTCTGCA----TAGTTCGTTCTGTATGATATTGGTGGGTGGAAGTTGGAATA-------------ACCCG---gaacatgtgcggttgttagatgacacagt--------t---------gctgattcccgagca
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154528180 105 - 158406734 ACGTTAGTTGTCTT-TGCA----CT----GTTCTGTACGATACTGGTGGGTGGAAATTGGAATA-------------ACCCA---GGGTGTGTTCGGTTGATGGATGATACAGG--------T---------CTTGATTCCTGAGCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360035  84 -   2682657 ACGTTAGTTGTCTTCTGCA----CT----GTTTTGTACCATACTGATGGGTGGAAATTGGCATA--------------------------------------GGATGATACAGG--------T---------CTTGATTCCTGAGCA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       386266 106 -   2086007 ACGTTACTTGTCGTCTGCA----CT----GTTCTGTACGATACTGATGGGTGGAAATTGGAATA-------------ACCCA---GGACGTGTACGATGGATGGATGATACGGG--------T---------CTTGATTCCTGAGCA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       447612 106 +   3831555 ACATGAGTTGTCTTCTGCA----CT----GTTCCGTACGATACTGATGGGTGGAAATTCGAATA-------------ACCCA---GGACGTGTTGGGTTGATGGATGATACAGG--------T---------TTTGATTCCTGAGCA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             470150  77 +   3845361 ATCTTGGTTGCCAT---------------GGTGTGGGCAGTGCAGCTG---------------------------------A---GGACATGTGCCATCCATGGATG--ACAGA--------T---------GCTGACTTCTGAGCA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56145980  92 + 145441459 ---------ACATCTTACA----TA----TCAGTGGAAGATA-GAGTAGGTGG----CTGCCTA-------------ATTCA---GGTCTTGTAAGATTGATAGGTGACTTAGC--------T---------GCTGATTTCTGAACA
i mm10.chr7                 C 0 I 185
s canFam3.chr3               60048129 118 -  91889043 ACATTAGTCTTTACTTGCA----TG--------------CTGTTAGAGAGTGGAAATTGGGATAAATAACTACCTTAACTTA---GGACCTGTGCAGTTGACAGAGGATGTAGT--------TCGTGATATAGTTAGTTTCTGGGCA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             432767 124 +    563711 ACTGTAATCGCCTTTCACAGTCTCT----AATTTACATGGTGTCCGTGAGTAGAACTTGTAATA----------CATGTCCACTTTAACTCGTGCAATGAATGGATGACAGAGGATGGGAGTT---------GTTGAGTCCTGAGCA
i dasNov3.JH562051          C 0 C 0
e micMur3.chr9              116303620 165 + 116334831 I
e proCoq1.NW_012148396v1     13519949 157 +  16154928 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=262354.000000
s hg38.chr15_KI270851v1_alt    198934 45 +    263054 GCTGAAGGGAGTGAACACA--AACAGGG-AATCATAA--------GT-AGGGCATCT
s panPan2.chr15              74118975 45 -  99763055 GCTGAAGGGAGTGAACACA--AGTAGGG-AATCATAA--------GT-AGGGCATCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       162813 45 -    281578 GCTGAAGGGAGTGAACACA--AGTAGGG-AATCATAA--------GT-AGGGCATCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71022632 45 + 121039945 GCTGAAGGGAGTGAACACA--AGTAGGG-AATCATAA--------GT-AGAGCATCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164332689 33 - 169600520 GCTGAAG--------------AGTAGGG-AATCATAA--------GT-AGGGCATCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165653654 33 - 171882078 GCTGAAG--------------AGTAGGG-AATCATAA--------GT-AGGGCATCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       508026 33 +   2379783 GCTGAAG--------------AGTAGGG-AATCATAA--------GT-AGGGCATCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465199 33 +   4116138 GCTGAAG--------------AGTAGGG-AATCATAA--------GT-AGGGCATCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53897481 47 +  58131712 GCTGAAGAGTAGGGAATCATAAGTAGGG-AATCATAA--------GT-AGGGCATCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       517953 33 -   3636681 GCTGAAG--------------AGTAGGG-AATCATAA--------GT-AGGGCATCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497215 45 -   4457520 gctgaagagagtgaacaca--agtaggg-aatcataa--------gt-agggCATCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154528285 53 - 158406734 GCTGAAGAGAGTTAACAGA--AGTAGGG-GGTAATCATGCCTGCTGG-AGGGCATCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360119 53 -   2682657 GCTGAAGAGAGTTAACACA--AGTAGGG-AGTCGTCATGCCTGCTGT-GGGGCATCT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       386372 53 -   2086007 GCTGAAGAGAGTTAACACA--AGTAGGG-AGTAATCATGCCTGCTGT-AGGGCATCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       447718 53 +   3831555 GCTGAAGAGAGTTGACACA--AGTAGGG-AGTAATCATGCCTGCTGT-AGGGCATCT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             470227 51 +   3845361 GCTGAAG--AGTCAAAACT--GGAAGAGTAATGGTAG--TCTGCTGTGAGGGCACCT
i otoGar3.GL873689          C 0 I 1
s canFam3.chr3               60048247 50 -  91889043 GGTGAATTAGGTCAAAACA--AGCAGAG-ATTGACAG---TGGCTGT-AGGGGAACC
i canFam3.chr3              C 0 I 2
s dasNov3.JH562051             432891 41 +    563711 GAT-AAGTAAAATTACAGA--GGTGGAG-AGTCATG---------GT---GGCATGC
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56146072 185 + 145441459 I
e micMur3.chr9              116303620 165 + 116334831 I
e proCoq1.NW_012148396v1     13519949 157 +  16154928 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=282111.000000
s hg38.chr15_KI270851v1_alt    198979 26 +    263054 ------------GAGCAGAATCAAGTCTGGAAAGAGAG
s panPan2.chr15              74119020 26 -  99763055 ------------GAGCAGAATCAAGTCTGGAAAGAGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       162858 26 -    281578 ------------GAGCAGAATCAAGTCTGGAAAGAGAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71022677 25 + 121039945 ------------GAACAGAA-CAAGTCTGGAAAGAGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164332722 26 - 169600520 ------------GAGCAGAATCAAGTCCAGAAAGAGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165653687 26 - 171882078 ------------GAGCAGAATCAAGTCCAGAAAGAGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       508059 26 +   2379783 ------------GAGCAGAATCAAGTCCAGAAAGAGAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465232 26 +   4116138 ------------GAGCAGAATCAAGTCGAGAAAGAGAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53897528 26 +  58131712 ------------GAGCAGAATCAAGTCCAGAAAGAGAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       517986 26 -   3636681 ------------GAGCAGAATCAAGTCCAGAAAGAGAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497260 26 -   4457520 ------------GAGCAGAACCAAGTCCAGAAAGAGAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154528338 26 - 158406734 ------------GAGCAGAGTCAAGTCTAGAAAGACAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360172 26 -   2682657 ------------GAGCAGCATGAAGTCTAGAAAGAGAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       386425 26 -   2086007 ------------GAGCAGAATGAAGTCTAGAAAGAGAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       447771 26 +   3831555 ------------GAGCAGAATCAAGTCTAGAAAGACAG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13520106 26 +  16154928 ------------GAGCAGAATCAAGTCTGCCAAGAGTA
i proCoq1.NW_012148396v1    I 157 C 0
s otoGar3.GL873689             470279 26 +   3845361 ------------CAGCAGGGTCAAGTCTGCAAAAAGTC
i otoGar3.GL873689          I 1 C 0
s canFam3.chr3               60048299 26 -  91889043 ------------GAGCAGAATCAAGTCTTCAAAGGGTG
i canFam3.chr3              I 2 C 0
s dasNov3.JH562051             432932 37 +    563711 TACCAGAACCTCAAGCAGAGTCTGGTTT-GAGACAGTG
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56146072 185 + 145441459 I
e micMur3.chr9              116303620 165 + 116334831 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=895779.000000
s hg38.chr15_KI270851v1_alt    199005 79 +    263054 GCAGCTCTTTTCAGGAAACTCACTGGCATGAGGCTCAGTTTGATGGGT--------CA-CTGGAACAAGAGTGTGAGAGTGAGCA--AGA
s panPan2.chr15              74119046 79 -  99763055 GCAGCTCTTTTCAGGAAACTCACTGGCATGAGGCTCAGTTTGATGGGT--------CA-CTGGAACAAGAGTGTGAGAGTGAGCA--AGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       162884 79 -    281578 GCAGCTCTTTTCAGGAAACTCACTGGCATGAGGCTCAGTTTGATGGGT--------CA-CTGGAACAAGAGTGTGAGAGTGAGCA--AGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71022702 77 + 121039945 GCAGCTCTTTTCAGGAAACTCACTGGCATGAGGCTCAGTTTGATGGGT--------CA-CTGGAACAAGA--GTGAGAGTGAGCA--AGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164332748 77 - 169600520 GCAGCTCTTTTCAGGAAACTCACTGGCGTGAGGCTCAGTTTGATGGGT--------CG-CTGGAACCAGA--GTGAGAGTGAGCA--AGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165653713 77 - 171882078 GCAGCTCTTTTCAGGAAACTCACTGGCGTGAGGCTCAGTTTGATGGGT--------CG-CTGGAACCAGA--GTGAGAGTGAGCA--AGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       508085 77 +   2379783 GCAGCTCTTTTCAGGAAACTCACTGGCGTGAGGCTCAGTTTGATGGGT--------CG-CTGGAACCAGA--GTGAGAGTGAGCA--AGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465258 77 +   4116138 GCAGCTCTTCTCAGGAAACTCACTGGCGTGAGGCTCAGTTTGATGGGT--------CG-CTGGAACCAGA--GAGAGAGTGAGCA--AGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53897554 77 +  58131712 GCAGCTCTTTTCAGGAAACTCACTGGCATGAGGCTCAGTTTGATGGGT--------CG-CTGGAACCAGA--GTGAGAGTGAGCA--AGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518012 77 -   3636681 GCAGCTCTTCTCAGGAAACTCACTGGCGTGAGGCTCAGTTTGATGGGT--------CG-CTGGAACCAGA--GTGAGAGTGAGCA--AGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497286 77 -   4457520 GCAGCTCTTTTCAGGAAACTCACTGGCTTGAGGCTCGGTTTGATGGGT--------CG-CTGGAACCAGA--GTGAGAGTGAGCA--AGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154528364 75 - 158406734 ACGGCTCT--TTAGAAAACTCACTGGCGTGAGGCTCAGTTTGATGGGC--------AG-CTGGAACGGGA--CTGGGAGTGAGCC--AGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360198 75 -   2682657 GCAGCTCT--TCAGAAAACTCCCTGGCATGAGACTCAGTTTGATGGGT--------AG-CTGGAACAAGA--GTGAGAGTGAGCA--AGA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       386451 75 -   2086007 GCAGCTCT--TCAGAAAACTCAGTGGCAAGAGGCTCAGTTTGATGGGT--------AG-CTGGAACAAGA--GTGAGAGTGAGTA--AGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       447797 75 +   3831555 GCAGCTCT--TCAGAAAACTCACTGGCATGAGGCTCAGTTGGATGGGT--------AG-CTGGAGTAAGA--GTGAGAGTGAGCA--AGA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116303785 79 + 116334831 GCAGCTATTTTCAGATAACTCATTGGCGTGAGGCTCAATTTGATGTGC--------AG-ATGGGACAAGA--GTGAGAGTGAGCAAGAGA
i micMur3.chr9              I 165 C 0
s proCoq1.NW_012148396v1     13520132 79 +  16154928 GCAGCTATTTTCAGACAACTCATTGGTGTGAGGCTCAATTTGATGTGC--------AG-GTGGAACAAGA--GTGAGAGTGAGCAAGAGA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             470305 68 +   3845361 GTGGCTATTTTCAGAAAACTCATTGGTGTGAGGCTCAGTTTGATGTGC--------AG-TTGGAACAA------GAGAGTGAG-------
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60048325 79 -  91889043 GTGGCTGTTTTCAGAAAATTCCTTGGCTTG-GGCTCAATTTGAGGGGC--------AGCCCAGAGCAGGA--GCAAGAATAAGCAGGAGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             432969 84 +    563711 CTAGTGTTTTTCAGAAATCCCACCATCCCCTGGCTCAATCTGTTGTACATGTCTTACT-TTGGAAAAATT--TTGAG-GTTAGCA--AGA
i dasNov3.JH562051          C 0 I 51
e mm10.chr7                  56146072 185 + 145441459 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=235244.000000
s hg38.chr15_KI270851v1_alt    199084 19 +    263054 GAGTAAATCTCATTCTGAA
s panPan2.chr15              74119125 19 -  99763055 GAGTAAATCTCATTCTGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       162963 19 -    281578 GAGTAAATCTCATTCTGAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71022779 19 + 121039945 GAGTAAATCTCATTCTGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164332825 19 - 169600520 GAGTAAATCTCATTCTGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165653790 19 - 171882078 GAGTAAATCTCATTCTGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       508162 19 +   2379783 GAGTAAATCTCATTCTGAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465335 19 +   4116138 GAGTAAATCTCATTCTGAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53897631 19 +  58131712 GAGTAAATCTCATTCTGAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518089 19 -   3636681 GAGTAAATCTCATTCTGAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497363 19 -   4457520 GAGTAAATCTCATTCTGAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154528439 19 - 158406734 GAGTACATCTCATTCTGAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360273 19 -   2682657 GAGTACCTCTCACTCTGAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       386526 19 -   2086007 GGGTACATCTCATTCTGAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       447872 19 +   3831555 GAGTACATCTCATTCTGAA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116303864 19 + 116334831 GAGTAAATCTCATTCTGAA
i micMur3.chr9              C 0 I 180
s proCoq1.NW_012148396v1     13520211 19 +  16154928 GAGTAAATCTCATTCTGAG
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             470373  9 +   3845361 ----------CATGCTGAG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60048404 19 -  91889043 GATCAAACCTCATCTTAGT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56146072 185 + 145441459 I
e dasNov3.JH562051             433053 51 +    563711 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=747010.000000
s hg38.chr15_KI270851v1_alt    199103 76 +    263054 AGTTGGTGT--AGTGAAGGCTCTGAGGCAGGAAGCCCAGATGCTGCCCCTGTGGGCTGATGGCCATGTG-CTGCGAAGT
s panPan2.chr15              74119144 76 -  99763055 AGTTGGTGT--AGTGAAGGCTCTGAGGCAGGAAGCCCAGATGCTGCCCCTGTGGGCTGATGGCCATGTG-CTGCGAAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       162982 76 -    281578 AGTTGGTGT--AGTGAAGGCTCTGAGGCAGGAAGCCCAGATGCTGCCCCTGTGGGCTGATGGCCATGTG-CTGCGAAGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71022798 76 + 121039945 AGTTGGTGT--AGTGAAGGCTCTGAGGCAGGAAGCCCAGATGCTGCCCCTGTGAGCTGATGGCCATGTG-CTGCGAAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164332844 76 - 169600520 AGTTGGTGT--AGTGAAGGCTCTGAGGCAGGAAGCCCAGATGCTGACCCTGTGAGTTGATGGCCATGTG-CTGCGAAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165653809 76 - 171882078 AGTTGGTGT--AGTGAAGGCTCTGAGGCAGGAAGCCCAGATGCTGACCCTGTGAGTTGATGGCCATGTG-CTGCGAAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       508181 76 +   2379783 AGTTGGTGT--AGTGAAGGCTCTGAGGCAGGAAGCCCAGATGCTGACCCTGTGAGTTGATGGCCATGTG-CTGCGAAGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465354 76 +   4116138 AGTTGGTGT--AGTGAAGGCTCTGAGGCAGGAAGCCCAGATGCTGACCCTGTGAGCTGATGGCCATGTG-CTGCGAAAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53897650 76 +  58131712 AGTTGGTGT--AGTGAAGGCTCTGAGGCAGGAAGCCCAGATGCTGACCCTGTGAGCTGATGGCCATGTG-CTGCGAAGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518108 76 -   3636681 AGTTGGTGT--AGTGAAGGCTCTGAGGCAGGAAGCCCAGATGCTGACCCTGTGAGCTGATGGCCATGTG-CTGCGAAGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497382 76 -   4457520 AGTTGGTGT--AGTGAAGGCTCTGAGGCAGGAAGCCCAGATGCTGACCCTGTGAGCTGATGGCCATGTG-CTGCCAAGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154528458 76 - 158406734 AGTCAGTGT--AGTGACAGCTCTGAGGCGGGAAGCCCAGACGCTGCCTCTGTGGGCTGATGCCCGTGGG-CTGCGAAGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360292 76 -   2682657 AGTCAGAGT--AGTGGCAGCTCCAAGGCAGGAAGCCCAGATGCTGCCTCTGTGGGCTGATGCCCGTGGG-CTGCGAAGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       386545 76 -   2086007 GGTCAGTGT--AGTGACAGCTCCGAGGCAGGAAGCCCAGATGCTGCCTCTGTGGGCCAGTGCCCGTGGG-CTGCGAAGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       447891 76 +   3831555 AGTCAGTGT--AGTGACAGCTCCGAGGCAGGAAGCCCAGATGCTGTCTCTGTGGGCTGATGCCCGTGGG-CTGTGAAGT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13520230 76 +  16154928 --TGAGAGCATTGTGAAAGCTCTGAGGCTGGAGGCCCAGATGCTGCCACTGTAAGCTGTTGGCCATGGG-CTGTGAAGT
i proCoq1.NW_012148396v1    C 0 I 85
s otoGar3.GL873689             470382 64 +   3845361 GCTGGGCCC----------CTCTGCTCCT---GCCCCTGCCCCTGCCCCTGTGAGCTGTTGGCCATGTG-CCCTGAGT-
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60048423 70 -  91889043 -AACAATGT--TCTGAAAGCTGTGAGG------ACCCAGGTGTTCCTTCTGGGAACTGATGGCTATGTGCCCATTAAGT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56146072 185 + 145441459 I
e micMur3.chr9              116303883 180 + 116334831 I
e dasNov3.JH562051             433053 51 +    563711 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=739043.000000
s hg38.chr15_KI270851v1_alt    199179 91 +    263054 GCCCTGAAGCCAGTAGTTAGGGATCTACTTCATGGGCCTGTGGCCACGTTTCCATCTTCCCTCATCGCAGGTCTCTTCT-AAATC-TCTGCCA
s panPan2.chr15              74119220 92 -  99763055 GCCCTGAACCCAGTAGTTAGGGATCTACTTCATGGGCCTGTGGCCACGTTTCCATCTTTCCTCATCACAGGTCTCTTCTGAAATC-TCTGCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163058 91 -    281578 GCCCTGAACCCAGTAGTTAGGGATCTACCTCATGGGCCTGTGGCCACGTCTCCATCTTCCCTCATGGCAGGTCTCTTCT-AAATC-TCTGCCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71022874 91 + 121039945 GCCCTGAACCCAGCAGTTAGGGATATACTTCATGGGCCTGTGGCCGCATCTCCATTTTCCCTCATCGCAGGTCTCTTCT-AAGTC-TCTGCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164332920 89 - 169600520 GCCGCGAGCCTAGTAGTTAGGGATACACCTCATGGGCCTGTGGCCGTGTCTCCATTTTCCCTCATAGCAGGTCTCTTCT-AAA---TCTGCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165653885 89 - 171882078 GCCGCGAGCCTAGTAGTTAGGGATACACCTCATGGGCCTGTGGCCGTGTCTCCATTTTCCCTCATAGCAGGTCTCTTCT-AAA---TCTGCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       508257 89 +   2379783 GCCGCGAGCCTAGTAGTTAGGGATACACCTCATGGGCCTGTGGCCGTGTCTCCATTTTCCCTCATAGCAGGTCTCTTCT-AAA---TCTGCCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465430 89 +   4116138 GCCGCGAGCCCAGTAGTTAGGGATACACCTCATGGGCCTGTGGCCGTGTCTCCATTTTCCCTCATAGCAGGTCTCTTCT-AAA---TCTGCCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53897726 89 +  58131712 GCCGCGAGCCCAGTAGTTAGGGATACACCTCATGGGCCTGTGGCCGTGTCTCCATTTTCCCTCATAGCAGGTCTCTTCT-AAA---TCTGCCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518184 89 -   3636681 GCCGCGAGCCCAGTAGTTAGGGATACACCTCATGGGCCTGTGGCCGTGTCTCCTTTTTTCCTCATAGCAGGTGTCTTCT-AAA---TCTGCCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497458 89 -   4457520 GCCCCGAGCCCAGTAGTTAGGGATATACTTCATGGGCCTGTGGCCACGTCTCCATTTTCCCTCATAGCGGGTCTCTTCT-AAA---TCTGCCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154528534 91 - 158406734 GCCCCGAACCCGGCGGTTTGGGTTAGACTTCATGGGCTTGTGGCCACGTCTCCATTTTCCCTCACAGCAGGTCTCTTCT-AAATC-CCTGCCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360368 91 -   2682657 GCCCCGAATCCAGTGGTTTGGGATAGACTTCAGGGGCTTGTGGCCCCGTCTCCATTTTCCCTCCCAGTAGGTCTCTTCT-AAATC-CCTGCCG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       386621 90 -   2086007 ACCCCGAATCCAGTTGTTTGGGATAGACTTCA-GGGCTTGTGGCCACGTCTCCATTTTCCCTCATAGCAGGTCTCTTCT-AAATC-CCTGCCA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       447967 91 +   3831555 GCCCCGAACCCTGTGGTTTGGGTTAGACTTCATGGGCTTGTGGCCACGTCTCCATTTTCCCTCACAGCAGGTCTCTTCT-AAATC-CCTGCCA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             470446 88 +   3845361 -GCCTTAACCCAGCAATTCTGG-TGTACCGGCTGGGTGGGTGGCCCCCTCT-CGTTTTCCCTCCTGGTTGCTG-CTTCC-AAATCTATTGTCA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60048493 87 -  91889043 -GCCCCAGCCTTGTAGTTTCAGGTGTGCTAGTTGGGCA-GTGGCCA--TTTCTGTTTCTCCTCATAGCACATCTTTCCT-AAGCT-TCTGTTA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56146072 185 + 145441459 I
e micMur3.chr9              116303883 180 + 116334831 I
e proCoq1.NW_012148396v1     13520306 85 +  16154928 I
e dasNov3.JH562051             433053 51 +    563711 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=208272.000000
s hg38.chr15_KI270851v1_alt    199270 21 +    263054 GGTG-CCCCCAGGTGGAAGTCA
s panPan2.chr15              74119312 22 -  99763055 GGTGCCCCCCAGGTGGAAGTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163149 21 -    281578 GGTG-CCCCCAGGTGGAAGTCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71022965 21 + 121039945 GGTG-CCTCCAGGTGGAAGTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164333009 20 - 169600520 -GTA-CCCCCAGGTGGAAGTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165653974 20 - 171882078 -GTA-CCCCCAGGTGGAAGTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       508346 20 +   2379783 -GTA-CCCCCGGGTGGAAGTCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465519 20 +   4116138 -GTA-CCCCCCGGTGGAAGTCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53897815 20 +  58131712 -GTA-CCCCCGGGTGGAGGTCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518273 20 -   3636681 -GTA-CCCCCCGGTGGAAGTCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497547 20 -   4457520 -GTA-CCCCCGGGTGGAAGTCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154528625 21 - 158406734 GGTG-CCCCCAGGTGGAAGTCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360459 21 -   2682657 GGTG-CCCCCAGCTGGAAGTCA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       386711 21 -   2086007 GGTG-ACCCCAGGTGGAAGTCA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       448058 21 +   3831555 GGCG-CCCCCAGGTAGAAGTCA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13520391 20 +  16154928 GGTG-CTCCCAGGTGGA-GTTG
i proCoq1.NW_012148396v1    I 85 C 0
s otoGar3.GL873689             470534 21 +   3845361 GGTG-CCCCCAGGGGAAGGCTG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60048580 21 -  91889043 GGTC-TCACAAGGTAGAGATCA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56146072 185 + 145441459 I
e micMur3.chr9              116303883 180 + 116334831 I
e dasNov3.JH562051             433053 51 +    563711 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=1401539.000000
s hg38.chr15_KI270851v1_alt    199291 127 +    263054 --------------------CTTACCACAGCC-CTAGCTAAGTTAGGGCAGTGTTCACCTTCCCATGG-TCTG-----------------TCTGGCTTTTCTCAGCCACGCTGGTAAGCCCTGGCTTTGTCACAGTCATCTTAGAA--------------ATAGCAGTGT--CTGGAGA---CAG
s panPan2.chr15              74119334 127 -  99763055 --------------------CTTACCACAGCC-CTAGCTAAGTTAGGGCAGTGTTCACCTTCCCATGG-TCTG-----------------TCTGGCTTTTCTCAGCCACGCTGGTAAGCCCTGGCTTTGTCACAGTCATCTTAGAA--------------ATAGCAGTGT--CTGGAGA---CAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163170 127 -    281578 --------------------CTTACCACAGCC-CTAGCTAAGTTAGGGCAGTGTTCACCTTCCCATGG-TCTG-----------------TCTAGCTTTTCTCAGCCACGCTGGTAAGCCCCGGCTTTGTCACAGTCATCTTAGAA--------------ATAGCAGTGT--CTGGAGA---CAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71022986 130 + 121039945 --------------------CTTACCACAGCC-CTAGCTAAGTTAGAGCAGTGTTCACCTTCCCATGG-TCTG-----------------TCTAGCTTTTCTCAGCCATGCTGGTAAGCCCCGGCTTTGTCACTGTCATCTTAGAA--------------ATAGCAGTGT--CTGGAGACAGCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164333029 130 - 169600520 --------------------CTTACCACAGCC-CTAGCTAAGTTAGGGCAGTGTTCACCTTCCCATGG-TCTG-----------------TCTGGCTTTTCTCAGCCACGCTGGTAAGCCCGGGCTTTGTCACAGTCATCTTAGAA--------------ATCGCAGTGT--CTGGAGACAGCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165653994 130 - 171882078 --------------------CTTACCACAGCC-CTAGCTAAGTTAGGGCAGTGTTCACCTTCCCATGG-TCTG-----------------TCTGGCTTTTCTCAGCCACGCTGGTAAGCCCGGGCTTTGTCACAGTCATCTTAGAA--------------ATCGCAGTGT--CTGGAGACAGCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       508366 130 +   2379783 --------------------CTTACCACAGCC-CTAGCTAAGTTAGGGCAGTGTTCACCTTCCCATGG-TCTG-----------------TCTGGCTTTTCTCAGCCACGGTGGTAAGCCCGGGCTTTGTCACAGTCATCTTAGAA--------------ATCGCAGTGT--CTGGAGACAGCAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465539 129 +   4116138 --------------------CTTACCACAGCC-CTAGCTAAGTTAGGGCAGTGTTCACCTTCCCATGG-TCTG-----------------TCTGGCTTTTCTCAGCCACGCTGGTAAG-CCGGGCTTTGTCACAGTCATCTTAGAA--------------ATAGCAGTGT--CTGGAGACAGCAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53897835 130 +  58131712 --------------------CTTACCACAGCC-CTAGCTAAGTTAGGGCAGTGTTCACCTTCCCATGG-TCTG-----------------TCTGGCTTTTCTCAGCCACGCTGGTAAGCCTGGGCTTTGTCACAGTCATCTTAGAA--------------ATAGCAGTGT--CTGGAGACAGCAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518293 130 -   3636681 --------------------CTTACCACAGCC-CTAGCTAAGTTAGGGCAGTGTTCACCTTCCCATGG-TCTG-----------------TCTGGCTTTTCTCAGCCACGCTGGTAAGCCCGGGCTTTGTCACAGTCATCTTAGAA--------------ATAGCAGTGT--CTGGAGACAGCAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497567 130 -   4457520 --------------------CTTACCACAGCC-CTAGCTAAGTTAGGACAGTGTTCACCTTCCCATGG-TCTG-----------------TCTAGCTTTTCTCAGCCACGCTGGTAAGCCCGGGCTTTGTCACAGTCATCTTAGGA--------------ATAGCAGTGT--CTGGAGACAGCAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154528646 129 - 158406734 --------------------CTTACCACAGCT-CTAGCTAAGTCAGGGCAGGGCTCACCTTCCGGTGG-GCTG-----------------CCTGGC-TTCCCCAGCCACATGGGAAAGCCTGGGCTTTGTCACGGCTGGTGTAGAA--------------ATGGCGGTGT--CTGGAGACAGCAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360480 129 -   2682657 --------------------CTTACCACAGCC-CTAGCTAAGTCAGGGCGGGGCTCACCTTCCCCTGG-GCTG-----------------TCTAGC-TTCCCCAGCCACACGGGAAAGCCTGGGCTTTGTCACGGTTGTTGTAGAA--------------ATGGCAGTGT--CTGGAGACAGCAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       386732 128 -   2086007 --------------------CTTACCACAGCC-CTAGCTAAGTCAGGGCAGGGCTCACTGTCCCGTGG-GCTG-----------------TCTAGC-TTCCCCC-CCACATGGGAAAGCCTGGGCTTTGTCACGGCTGTCGTAGAA--------------ATGGCAGTGT--CTGGAGACAGCAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       448079 129 +   3831555 --------------------CTTACCACAGCC-CTTGCTAAGTCACTGCAGGGCTCACCTTCCCGTGG-GCTG-----------------TCTAGC-TTCCCCAGCCACACGGGAAAGCCTGGGCTTTGTCACCGTTGTCGTAGAA--------------ATAGCAGTGT--CTGGAGACAGCAG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116304063 128 + 116334831 --------------------CTTACCACAGCC-CCAGCTAAGTTAGTGTAGTGTTCACCTTCCCATGGCTCTG-----------------TCTGGGTTTTCTCAGCCACACTGTCAAGCAGGGGCTTTGTTACAGTCCTCTTAGAA--------------ATGAAAGTGT--CTGGGGACAG---
i micMur3.chr9              I 180 I 249
s proCoq1.NW_012148396v1     13520411 128 +  16154928 --------------------CTTACCATAGCC-CTAGCTAAGTTAAGGCAGTGTTCACCTTCCCATGGCTCTG-----------------TCTGGGTTTTCTCAGCCACACTGTTAAGCATGGGCTTTGTTACAGTCCTCTCAGAA--------------ATGAAAGTGT--CTGGGGACAG---
i proCoq1.NW_012148396v1    C 0 I 430
s otoGar3.GL873689             470555 128 +   3845361 --------------------CTTGCCATAGTC-CTTGCTGATATAGGACAGTGTTCACCTTCCCACGGCTCTG-----------------TCTGGGGTTTCTCAGCCCTACTGTTCACCATGGACTTTGTCCCAGTCATCTTAGAA--------------ATGCAAGTGTGGTCAGAGAC-----
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60048601 176 -  91889043 TGGGGGCTAGTGCCTGTGTCATTACTTTAGTCACTAGCTAAG----GAAAGAGCTCGCCTTCCTGCAG-TGTGGTAGTACTCTTGTCATCTTTAGGTTTTCTCAACCTCATTTTTAAGCATGGGCCTCATCAGAATCATCTCAGAAGTGTTCTGGAACAGGTAGCAGCAT-CCTAAAAACAG---
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56146072 185 + 145441459 I
e dasNov3.JH562051             433053  51 +    563711 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=1243190.000000
s hg38.chr15_KI270851v1_alt    199418 143 +    263054 -------------CATCC------------ATCCTAGAAACAGCTTTCTCCTGCAGAAGTGAGAGACAGAGCTTCC-CCCTGGGGCCCAGGGG--AAACTGAAGCAAAGGGAATGTGGAGGTGCTGGTGCTTGTTTCAGGTTTCCGCTCTTGCAAGGCCC-GTGAGGGATTG
s panPan2.chr15              74119461 143 -  99763055 -------------CATCC------------ATCCTAGAAACAGCTTTCTCCTGCAGAAGTGAGAGACAGAGCTTCC-CCCTGGGGCCCGGGGG--AAACTGAAGCAAAGGGAATGTGGAGATGCTGGTGCTTGTTTCAGGTTTCCGCTCTTGCAAGGCCC-GTGAGGGATTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163297 143 -    281578 -------------CATCC------------ATCCTAGAAACAGCTTTCTCCTGCAGAAGTGAGAGCCAGAGCTTCC-CCCTGGGGCCCGGGGA--AAACTGAAGCAAAGGGAATGTGGAGGTGCTGGTGCTTGTTTCAGGTTTGCGCTCTTGCGAGGCCC-GTGAGGGATTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023116 143 + 121039945 -------------CATCC------------ACCCTAGAAACAGCTTTCTCCTGCAGAAGTGAGAGACAGAGCTTCC-CCCCGGGGCCTGGGGG--AAACTGAAGAAAAGGGAAGGTGAAGGTGCTGGTGCTTGTTTCAGGTTTCTGCTCTTGCAAGGCCC-GTGAGGGATTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164333159 142 - 169600520 -------------CATCC------------ATCGTAGAAACAGTTTTCTCCCGCAGAAGTGAGA--CAGAGCTTCCACCCTGGGGCCCGGGGG--AAACTGAAGAAAAGGGAATGTGGAGGTGCTGGTGCTTGTTTCCGGTTTCTGCTCTTGCAAGGCCC-GTGAGGGATTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165654124 142 - 171882078 -------------CATCC------------ATCGTAGAAACAGTTTTCTCCCGCAGAAGTGAGA--CAGAGCTTCCACCCTGGGGCCCGGGGG--AAACTGAAGAAAAGGGAATGTGGAGGTGCTGGTGCTTGTTTCCGGTTTCTGCTCTTGCAAGGCCC-GTGAGGGATTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       508496 142 +   2379783 -------------CATCC------------ATCGTAGAAACAGTTTTCTCCCGCAGAAGTGAGA--CAGAGCTTCCACCCTGGGGCCCGGGGG--AAACTGAAGAAAAGGGAATGTGGAGGTGCTGGTGCTTGTTTCCGGTTTCTGCTCTTGCAAGGCCC-GTGAGGGATTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465668 142 +   4116138 -------------CATCC------------ATCCTAGAAACAGTTTTCTCCCGCAGAAGTGAGA--CAGAGCTTCCACCCTGGGGCCCGGGGG--AAACTGAAGAAAAGGGAAGGTGGAGGTGCCGGTGCTTGTTTCCGGTTTCTGCTCTTGCAAGGCCC-GTGGGGGATTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53897965 142 +  58131712 -------------CATCC------------ATCCTAGAAACAGTTTTCTCCCGCAGAAGTGAGA--CAGAGCTTCCACCCTGGGGCCTGGGGG--AAACTGAAGAAAAGGGAATGTGGAGGTGCTGGTGCTTGTTTCCGGTTTCTGCTCTTGCAAGGCCC-GTGAGGGATTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518423 142 -   3636681 -------------CATCC------------ATCCTAGAAACAGTTTTCTCCCGCAGAAGTGAGA--CAGAGCTTCCACCCTGGGGCCCGGGGG--AAACTGAAGAAAAGGGAATGTGGAGGTGCTGGTGCTTGTTTCCGGTTTCTGCTCTTGCAAGGCCC-GTGAGGGATTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497697 140 -   4457520 -------------CATCC------------ATCCTAGAA--GGTTTTCTCCCGCAGAAGTGAGA--CAGAGCTTCCACTCTGGGGCCCGGGGG--AAACTGAAGAAAAGGGAATGTGGAGGTGCCGGTGCTTGTTTCCGGTTTCTGCTCTTGCAAGACCC-GTGAGGGATTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154528775 144 - 158406734 -------------CATCC------------ATCCTAGAAATAGCTTTCTCCTGCAGAAATGAGAGACAGGGCTTCCACTCTGGGGCTCAGGGG--GAACTGAAGAAGAGGGAGTGTGGAGGTGCTGGTGCTGGTTTTAGGTTTCCGCTCTGGCGAGGCCC-GTGAGGGATTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360609 143 -   2682657 -------------CATCC------------ACCTTAGAAACAGCTTTCTCCTGCAGAAATGAGAGGCAGGGCTTCCGCTCTGGGGCTCGCGGG--GAGCTGAAGAAGAGCGAGTGTGGA-GTGCTGGTGCCGGTTTCATGTTTCCGCTCTGGCGAGGCCC-GTGAGGGATTG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       386860 144 -   2086007 -------------CATCC------------ATCTTAGAAACAGCTTTCTCCTGCAGAAATGAGAGACAGGGCTTCCACTCTGGGGCTTGCGGG--GAGCTGAAGAAGAGGGACTGTGGAGGTGCTGGTGCTGGTTTCAGGTTTCCACCCTGGCGAGGGCC-GTGAGGGATTG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       448208 144 +   3831555 -------------CATCC------------ATCCTAGAAACAGCTTTCTCCTGCAGAAATGAGAGACAGGGCTTCCACTCTGGGGCTTGCGGG--GAACTGAAGAAGAGGGAGCGTGGAGGTGCTGGTGCTGGTTTCAGGTTTCCGCTCTGGCGAGGCCC-GTGAGGGATTG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             470683 124 +   3845361 -------------CAG-C------------ATCCTATAAACTGCCTTCTCCCATAGAAAGGACAGATGGAGCTTCCAGTACAGAGCCCAAAGGTCAAACAGAAGTA---GGAGCATGAGGGTACTTACTCT--------GTTGTAGCCCTT-----------TGGGGGCTTG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60048777 151 -  91889043 CTTTGACTCATAGTGTCCTGCAATAGTAGTATCCTAAAAACAGCTTTTACTCATAGAAGTGAGAGATGGAGTTTCCATTCTAG-----CTAGG--GTCCTGATG--------------AGATGCAAGTAATTGTTTCAGGTTTCTGGTGTTTCGAAGCCCTATGGGGGATCA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56146072 185 + 145441459 I
e micMur3.chr9              116304191 249 + 116334831 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433053  51 +    563711 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=709088.000000
s hg38.chr15_KI270851v1_alt    199561  81 +    263054 TGGGG----------------AC-AGGACT-TGC----TGCAA--------------AGCCCTGTCTCTGCATTGACTC--AGAGGATCCTCATTGAGATGAGA---TTTCCCCGACTTCCT--
s panPan2.chr15              74119604  81 -  99763055 TGGGG----------------AC-AGGACT-TGC----TGCAA--------------AGCCCTGTCTCTGCATTGACTC--AGAGGATCCTCATTGAGATGAGA---TTTCCCCGACTTCCT--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163440  81 -    281578 AGGGG----------------TC-AGGACT-TGC----TGCAA--------------AGCCCTGTCTCTGCATTGACTC--AGAGGATCCTCATTGAGATGAGA---TTTCCCCGACTTCCT--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023259  81 + 121039945 AGGGG----------------TC-AGGACT-TGC----TGCAA--------------AGCCCTGTCTCTGCATTGACTC--AGAGGATCCTCATTGAGATGAGA---TTTCCCTGACTTCCT--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164333301  82 - 169600520 AGGGG-----------------C-AGGACT-TGC----TGTAA--------------AGCCCTGTGTCTGCATTGACCCAGAGAGGATCCTAATTGAGATGAGA---TTTCCCCGACTTCCT--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165654266  82 - 171882078 AGGGG-----------------C-AGGACT-TGC----TGTAA--------------AGCCCTGTGTCTGCATTGACCCAGAGAGGATCCTAATTGAGATGAGA---TTTCCCCGACTTCCT--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       508638  83 +   2379783 AGGGG----------------TC-AGGACT-TGC----TGTAA--------------AGCCCTGTGTCTGCATTGACCCAGAGAGGATCCTAATTGAGATGAGA---TTTCCCCGACTTCCT--
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465810  82 +   4116138 AGAGT-----------------C-AGGACT-TGC----TGTAA--------------AGCCCTGTGTCTGCATTGACCCAGAGAGGATCCTAATTGAGATGAGA---TTTCCCCGACTTCCT--
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53898107  83 +  58131712 AGGGG----------------TC-AGGACT-TGC----TGTAA--------------AGCCCTGTGTCTGCATTGACCCAGAGAGGTTCCTAATTGCGATGAGA---TTTCCCCGACTTCCT--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518565  83 -   3636681 AGGGG----------------TC-AGGACT-TGC----TGTAA--------------AGCCCTGTGTCTGCATTGACCCAGAGAGGATCCTAATTGCGATGAGA---TTTCCCCGACTTCCT--
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497837  83 -   4457520 AGGGG----------------TC-AGGACT-TGC----CGTAA--------------AGCCCTGTGTCTACATTGACCCAGAGAGGATCCTAATTGAGATGAGA---TTTCCCCAAATTCCT--
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154528919  83 - 158406734 AGGGG----------------TC-AGGACT-TGC----TACAA--------------AGCCCTGTTTCTGCAGTGACTCAGAGAGGGTCCTCATTGAGATGAGA---TTTCCCCAACTTCTT--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360752  84 -   2682657 AGGGG----------------TCTAGAACT-TGC----TGAAA--------------AGCCCTGTCTCTGCATTGACTCACAGAGGATCCTAATTGAGATGAGA---CTTCCCCAGCTTCTT--
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       387004  83 -   2086007 AGGGC----------------TC-AGGACT-TGC----TGCAA--------------AGCCCTGTCTCTGCACTGACTCAGAGAGGATCCTAATTGAGATGAGA---TTTCCCCACCTTCTT--
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       448352  83 +   3831555 AGGGG----------------TC-AGGACT-TGC----TGCAA--------------AGCCCTGTCTCTGCATTGACTCAGAGAGGACCCTAGTTGAGATGAAA---TTTCCCCAACTTCTT--
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             470807  89 +   3845361 AAGGG----------------CA-AGGGCA-AGC----TGCTAGGACCACGCTGGGGAGGCCCATCCCTGTCTTTGCGCAGAGAGGATCCTCACTGAGATAA-----------TCATTTCTT--
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56146257  84 + 145441459 TGGGG----------------AG-ATCACT-TGCATTGCTCGA--------------ACACTCATTAATACATTTGTTC--AGAGTACCCTAGTTGAGA-GAGT---TCATTCCATGTCTCT--
i mm10.chr7                 I 185 I 6
s canFam3.chr3               60048928 105 -  91889043 AGGGAGCCAAGGAATAGGACACC-AGGACTAGGC----TGGAA--------------AGCCTTATCTCTGCATTGGCTTAGGGAGAATGCTGATTGAGACGATGTTTTTTCCCTGCTTAACTCT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              116304191 249 + 116334831 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433053  51 +    563711 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=107467.000000
s hg38.chr15_KI270851v1_alt    199642  9 +    263054 TGGT--AAAGC
s panPan2.chr15              74119685  9 -  99763055 TGGT--AAAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163521  9 -    281578 TGGT--AAAGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023340  9 + 121039945 TGGT--AAAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164333383  9 - 169600520 TGGT--AAAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165654348  9 - 171882078 TGGT--AAAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       508721  9 +   2379783 TGGT--AAAGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465892  9 +   4116138 TGGT--GAAGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53898190  9 +  58131712 TGGT--AAAGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518648  9 -   3636681 TGGT--AAAGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497920  9 -   4457520 TGGC--AAAGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154529002  9 - 158406734 TGGT--AAAGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360836 11 -   2682657 TGGTACAAAGG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       387087  9 -   2086007 TGGT--AAAGG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       448435  9 +   3831555 TGGT--AAAGG
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116304440  9 + 116334831 TGGT--AAAGG
i micMur3.chr9              I 249 C 0
s otoGar3.GL873689             470896  9 +   3845361 TGCT--AAAGG
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56146347  9 + 145441459 TGAT--AAAGG
i mm10.chr7                 I 6 C 0
s canFam3.chr3               60049033  9 -  91889043 TGGT--AAAGG
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433053 51 +    563711 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=388431.000000
s hg38.chr15_KI270851v1_alt    199651 30 +    263054 AGC---ATGAGCACGTTATTTTATGCCATTTAA
s panPan2.chr15              74119694 30 -  99763055 AGC---ATGAGCACGTTATTTTATGCCATTTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163530 30 -    281578 AGC---ATGAGCACGTTATTTTATGCCATTTAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023349 30 + 121039945 AGC---ATGAGCACGTTATTTTATGCCATTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164333392 30 - 169600520 AGC---ATGAGCACGTTATTTTATGTCATTTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165654357 30 - 171882078 AGC---ATGAGCACGTTATTTTATGTCATTTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       508730 30 +   2379783 AGC---ATGAGCACGTTATTTTATGTCATTTAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465901 30 +   4116138 AGC---ATGAGCACGTTATTTTATGTCATTTAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53898199 30 +  58131712 AGC---ATGAGCATGTTATTTTATGTCATTTAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518657 30 -   3636681 AGC---ATGAGCACGTTATTTTATGTCATTTAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497929 30 -   4457520 AGC---ATGAGCACATTGTTTTATGCCATTTAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154529011 30 - 158406734 AGC---ATGAGCACCTTATTTCATGCCTTTTAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360847 30 -   2682657 AGC---CTGAGCACGTTATTTCGTGCCATTTAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       387096 30 -   2086007 AGC---ATGAGCACGTTATTTCATGCCATTTAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       448444 30 +   3831555 AGC---ATGAGCACATTATTTCATGCTATTTAA
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116304449 30 + 116334831 AGC---ATGAGAACGTTATTTCATGTCATTTAA
i micMur3.chr9              C 0 C 0
s otoGar3.GL873689             470905 29 +   3845361 C-T---ATGAACATGTTAATTCATAGCGTTTAA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56146356 30 + 145441459 AAC---ATGAACATGTGATTTCATGGCATTTAA
i mm10.chr7                 C 0 I 84
s canFam3.chr3               60049042 33 -  91889043 AGCATAATAAGCAAGTTATTTCCTGATGTTTGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             433104 30 +    563711 AGA---ATGAGCAAGCTATTTTATGGCACCTAG
i dasNov3.JH562051          I 51 C 0
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=21204.000000
s hg38.chr15_KI270851v1_alt    199681 2 +    263054 -TT
s panPan2.chr15              74119724 2 -  99763055 -TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163560 2 -    281578 -TT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023379 2 + 121039945 -TT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164333422 2 - 169600520 -TT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165654387 2 - 171882078 -TT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       508760 2 +   2379783 -TT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465931 2 +   4116138 -TT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53898229 2 +  58131712 -TT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518687 2 -   3636681 -TT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497959 2 -   4457520 -TT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154529041 2 - 158406734 -TT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360877 2 -   2682657 -TT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       387126 2 -   2086007 -TT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       448474 2 +   3831555 -TT
i aotNan1.NW_018503298v1    C 0 C 0
s micMur3.chr9              116304479 2 + 116334831 -TT
i micMur3.chr9              C 0 N 0
s otoGar3.GL873689             470934 2 +   3845361 -TT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60049075 2 -  91889043 -TT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             433134 2 +    563711 GT-
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=216181.000000
s hg38.chr15_KI270851v1_alt    199683 28 +    263054 TAA---AATGATGCAAGC-ACACA---TTTTGTAG
s panPan2.chr15              74119726 28 -  99763055 TAA---AATGATGCAAGC-ACACA---TTTTGTAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163562 28 -    281578 TAA---AATGATGCAAAC-ACACA---TTTTGTAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023381 28 + 121039945 TAA---AATGATGCAAGC-ACACA---TTTTGTAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164333424 28 - 169600520 TAA---AATGATGCAAGC-ACACT---TTTTGTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165654389 28 - 171882078 TAA---AATGATGCAAGC-ACACT---TTTTGTAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       508762 28 +   2379783 TAA---AATAATGCAAGC-ACACT---TTTTGTAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465933 28 +   4116138 TAA---AATGATGCAAGC-ACACT---TTTTGTAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53898231 28 +  58131712 TAA---AATGATGCAAGC-ACACT---TTTTGTAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518689 28 -   3636681 TAA---AATGATGCAAGC-ACACT---TTTTGTAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497961 28 -   4457520 TAA---AATGATGCAAGC-ACACT---TTTTTTAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154529043 31 - 158406734 TGA---AATGATGCAAAC-ATGCTGCATTTTGTAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360879 31 -   2682657 TGA---AATGATGCAGAC-GTGCTGCATTTTGTAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       387128 31 -   2086007 TGA---AATGATGCAGAC-GTGCTGCATTTTGTAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       448476 30 +   3831555 TGA---AATGATGCAAAC-GTGCTGCATTTT-TAG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             470936 28 +   3845361 TAC---AGTGATCAGAGC-TGTCA---TTTTGCAG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60049077 31 -  91889043 TAAGGTAATGATGAGAGCTGTGCA---TGTTGC-G
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             433136 26 +    563711 TAA---AGTGATG--ATT-GTATA---TTTCATAG
i dasNov3.JH562051          C 0 I 117
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=427616.000000
s hg38.chr15_KI270851v1_alt    199711 59 +    263054 GAGAGGT----------------GAAATCTGTGTCTGGGGACAGCCCCTGACAGACAGGGTGGCATATGGCGACA
s panPan2.chr15              74119754 59 -  99763055 GAGAGGT----------------GAAATCTGTGTCTGGGGACAGCCCCTGACAGACAGGGTGGCATATGGCGACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163590 59 -    281578 GAGAGGT----------------GAAATCTGTGTCTGGGGACAGCCCCTGACAGATAGGGTGGCATATGGTGATA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023409 58 + 121039945 AAGAGGT----------------GAAATCTGTGTCT-GGGACAGCCCCTGACAGACATGGTGGCATACGGCGACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164333452 59 - 169600520 GAGAGGT----------------GAAATCTGTGTATGGGGACGGTCCCTGACAGACAGGGTGGCATATGGAGACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165654417 59 - 171882078 GAGAGGT----------------GAAATCTGTGTATGGGGACGGTCCCTGACAGACAGGGTGGCATATGGAGACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       508790 59 +   2379783 GAGAGGT----------------GAAATCTGTGTATGGGGACGGTCCCTGACAGACAGGGTGGCATATGGAGACA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       465961 59 +   4116138 GAGAGGT----------------GAAATCTGTGTATGGGGATGGTCCCTGACAGACAGGGTGGCATATGGAGACA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53898259 59 +  58131712 GAGAGGT----------------GAAATCTGTGTATGGGGACGGTCCCTGACAGACAGGGTGGCATATGGAGACA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518717 55 -   3636681 GAGAGGT----------------GAAATCTGTGTATGGGGACGGTCCCT----GACAGGGTGGCATATGGAGACA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       497989 59 -   4457520 GAGAGGT----------------GAAATCTGTGTATGGGGACGGTCCCTGACAGACAGGGTGGCACATGGAGACA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154529074 59 - 158406734 GAGAGGT----------------GAAATGTGTGTGTGGGGACAGCCCCTTATAGACAGGGCGGCAGACGGCGATA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360910 53 -   2682657 GAGAGGT----------------GAAA--TGTGTGTGGGGACAG--CGTTACAGAC--GGCGGCAGATGGCGATA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       387159 58 -   2086007 GAGAGGT----------------GAAATGTGTGTGTGGGGACAG-CCCTTACAGACAGGGCAGCAGATGGCGGTA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       448506 59 +   3831555 GAGAGGC----------------GAAATGTGTGTGTGGGGACAGCCCCTTACAGACAGGGCGGCAGATGGTGATA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             470964 61 +   3845361 GTAGGCTTGGGAGTCTGTTAACATGAATGTGTGTGCACTGATGGCCCCC--------------CTTATGGAGCCA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60049108 46 -  91889043 AGTAGGT----------------------------TTGGAGCAGTCTGTGGCACA-AAGTCTGTACACAGTGACA
i canFam3.chr3              C 0 I 175
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=186287.000000
s hg38.chr15_KI270851v1_alt    199770 19 +    263054 TCTGTGTGGCAGGTCTGGT
s panPan2.chr15              74119813 19 -  99763055 TCTGTGTGGCAGGTCTGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163649 19 -    281578 TCTGTGTGGCAGGTCTGGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023467 19 + 121039945 TCTGTGTGGCAGGTCTGGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164333511 19 - 169600520 TCTGTGTGGCAGGTCTGGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165654476 19 - 171882078 TCTGTGTGGCAGGTCTGGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       508849 19 +   2379783 TCTGTGTGGCAGGTCTGGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       466020 19 +   4116138 TCTGTGTGGCAGGTCTGGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53898318 19 +  58131712 TCTGTGTGGCAGTTCTGGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518772 19 -   3636681 TCTGTGTGGCAGGTCTGGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       498048 19 -   4457520 TCTGTGTGGCAGGTCTGGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154529133 19 - 158406734 TCTATGTGGCAGGTCTGGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360963 19 -   2682657 CCTGTGTGGCAGGTCTGGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       387217 19 -   2086007 CCGGTGTGGCAGGTCTGGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       448565 19 +   3831555 TCCGTGTGACAGGTCTGGT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             471025 19 +   3845361 CCTGGGTGGCCCGTCTGTT
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e panTro5.chr15               9585948 1303 +  83230942 I

a score=20540.000000
s hg38.chr15_KI270851v1_alt    199789 7 +    263054 GGGAGCC
s panPan2.chr15              74119832 7 -  99763055 GGGAGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163668 7 -    281578 GGGAGCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023486 7 + 121039945 GGGAGCC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165654495 6 - 171882078 -GGAGCC
i macFas5.chr7              C 0 C 0
s calJac3.chr6              154529152 7 - 158406734 GGGAACC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360982 7 -   2682657 GGGAACC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       387236 7 -   2086007 GGAAATC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       448584 7 +   3831555 GGGAACC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             471044 7 +   3845361 GGGAGAG
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e panTro5.chr15               9585948 1303 +  83230942 I
e colAng1.NW_012115278v1       498067 0 -   4457520 C
e manLeu1.NW_012102332v1       518791 0 -   3636681 C
e cerAty1.NW_012001462v1       466039 0 +   4116138 C
e macNem1.NW_012011934v1       508868 0 +   2379783 C
e rheMac8.chr7              164333530 0 - 169600520 C
e chlSab2.chr26              53898337 0 +  58131712 C

a score=50877.000000
s hg38.chr15_KI270851v1_alt    199796 18 +    263054 ATGGAAGGACCAGGGCAG
s panPan2.chr15              74119839 18 -  99763055 ATGGAAGGACCAGGGCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163675 18 -    281578 ATGGAAGGACCAGGGCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023493 18 + 121039945 ATGGAAGGACCAGGGCAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165654501 18 - 171882078 ATGGAAGGACCAGGGCAG
i macFas5.chr7              C 0 C 0
s calJac3.chr6              154529159 18 - 158406734 AGGGGAGGACCAGGGCAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             360989 18 -   2682657 AGGGAAGGACCAGGGCAG
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       448591 18 +   3831555 AGGGAAGGACCCGGGCAG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             471051 18 +   3845361 CTAGAGGGACCAGGGAAG
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e cebCap1.NW_016107707v1       387243  0 -   2086007 C
e panTro5.chr15               9585948 1303 +  83230942 I
e colAng1.NW_012115278v1       498067  0 -   4457520 C
e manLeu1.NW_012102332v1       518791  0 -   3636681 C
e cerAty1.NW_012001462v1       466039  0 +   4116138 C
e macNem1.NW_012011934v1       508868  0 +   2379783 C
e rheMac8.chr7              164333530  0 - 169600520 C
e chlSab2.chr26              53898337  0 +  58131712 C

a score=845.000000
s hg38.chr15_KI270851v1_alt    199814 1 +    263054 G
s panPan2.chr15              74119857 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163693 1 -    281578 G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023511 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165654519 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s otoGar3.GL873689             471069 1 +   3845361 A
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609 0 +   3831555 C
e cebCap1.NW_016107707v1       387243 0 -   2086007 C
e panTro5.chr15               9585948 1303 +  83230942 I
e colAng1.NW_012115278v1       498067 0 -   4457520 C
e manLeu1.NW_012102332v1       518791 0 -   3636681 C
e cerAty1.NW_012001462v1       466039 0 +   4116138 C
e macNem1.NW_012011934v1       508868 0 +   2379783 C
e rheMac8.chr7              164333530 0 - 169600520 C
e chlSab2.chr26              53898337 0 +  58131712 C
e saiBol1.JH378292             361007 0 -   2682657 C
e calJac3.chr6              154529177 0 - 158406734 C

a score=2881.000000
s hg38.chr15_KI270851v1_alt    199815 2 +    263054 GC
s panPan2.chr15              74119858 2 -  99763055 GC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163694 2 -    281578 GC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023512 2 + 121039945 GC
i nomLeu3.chr6              C 0 T 37
s macFas5.chr7              165654520 2 - 171882078 GC
i macFas5.chr7              C 0 T 36
s saiBol1.JH378292             361007 2 -   2682657 AC
i saiBol1.JH378292          C 0 C 0
s otoGar3.GL873689             471070 2 +   3845361 AC
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609 0 +   3831555 C
e cebCap1.NW_016107707v1       387243 0 -   2086007 C
e panTro5.chr15               9585948 1303 +  83230942 I
e colAng1.NW_012115278v1       498067 0 -   4457520 C
e manLeu1.NW_012102332v1       518791 0 -   3636681 C
e cerAty1.NW_012001462v1       466039 0 +   4116138 C
e macNem1.NW_012011934v1       508868 0 +   2379783 C
e rheMac8.chr7              164333530 0 - 169600520 C
e chlSab2.chr26              53898337 0 +  58131712 C
e calJac3.chr6              154529177 0 - 158406734 C

a score=1146.000000
s hg38.chr15_KI270851v1_alt    199817 2 +    263054 AC
s panPan2.chr15              74119860 2 -  99763055 AC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163696 2 -    281578 AC
i gorGor5.CYUI01000141v1    C 0 C 0
s saiBol1.JH378292             361009 2 -   2682657 AC
i saiBol1.JH378292          C 0 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609 0 +   3831555 C
e otoGar3.GL873689             471072 0 +   3845361 C
e cebCap1.NW_016107707v1       387243 0 -   2086007 C
e nomLeu3.chr6               71023514 37 + 121039945 T
e panTro5.chr15               9585948 1303 +  83230942 I
e colAng1.NW_012115278v1       498067 0 -   4457520 C
e manLeu1.NW_012102332v1       518791 0 -   3636681 C
e cerAty1.NW_012001462v1       466039 0 +   4116138 C
e macNem1.NW_012011934v1       508868 0 +   2379783 C
e rheMac8.chr7              164333530 0 - 169600520 C
e chlSab2.chr26              53898337 0 +  58131712 C
e calJac3.chr6              154529177 0 - 158406734 C
e macFas5.chr7              165654522 36 - 171882078 T

a score=3626.000000
s hg38.chr15_KI270851v1_alt    199819 15 +    263054 GCACCCTCCTAACTG
s panPan2.chr15              74119862 15 -  99763055 GCACCCTCCTAACTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163698 15 -    281578 ACACCGTCCTAACTG
i gorGor5.CYUI01000141v1    C 0 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609  0 +   3831555 C
e otoGar3.GL873689             471072  0 +   3845361 C
e cebCap1.NW_016107707v1       387243  0 -   2086007 C
e nomLeu3.chr6               71023514 37 + 121039945 T
e panTro5.chr15               9585948 1303 +  83230942 I
e colAng1.NW_012115278v1       498067  0 -   4457520 C
e manLeu1.NW_012102332v1       518791  0 -   3636681 C
e cerAty1.NW_012001462v1       466039  0 +   4116138 C
e macNem1.NW_012011934v1       508868  0 +   2379783 C
e rheMac8.chr7              164333530  0 - 169600520 C
e chlSab2.chr26              53898337  0 +  58131712 C
e saiBol1.JH378292             361011  0 -   2682657 C
e calJac3.chr6              154529177  0 - 158406734 C
e macFas5.chr7              165654522 36 - 171882078 T

a score=34662.000000
s hg38.chr15_KI270851v1_alt    199834 39 +    263054 AGGTCTGGTGGGAGCCATGGAAGGACCAGGGCAGGGCAC
s panPan2.chr15              74119877 39 -  99763055 AGGTCTAGTGGGAGCCATGGAAGGACCAGGGCAGGGCAC
i panPan2.chr15             C 0 T 54
s gorGor5.CYUI01000141v1       163713 39 -    281578 AGGTCTGGTGGGAGCCATGGAAGGACCAGGGCAGGGCAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023477 39 + 121039945 AGGTCTGGTGGGAGCCATGGAAGGACCAGGGCAGGGCAT
i nomLeu3.chr6              T 37 C 0
s macFas5.chr7              165654486 38 - 171882078 AGGTCTGGT-GGAGCCATGGAAGGACCAGGGCAGGGCAC
i macFas5.chr7              T 36 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609  0 +   3831555 C
e otoGar3.GL873689             471072  0 +   3845361 C
e cebCap1.NW_016107707v1       387243  0 -   2086007 C
e panTro5.chr15               9585948 1303 +  83230942 I
e colAng1.NW_012115278v1       498067  0 -   4457520 C
e manLeu1.NW_012102332v1       518791  0 -   3636681 C
e cerAty1.NW_012001462v1       466039  0 +   4116138 C
e macNem1.NW_012011934v1       508868  0 +   2379783 C
e rheMac8.chr7              164333530  0 - 169600520 C
e chlSab2.chr26              53898337  0 +  58131712 C
e saiBol1.JH378292             361011  0 -   2682657 C
e calJac3.chr6              154529177  0 - 158406734 C

a score=13466.000000
s hg38.chr15_KI270851v1_alt    199873 16 +    263054 GCACCCTCCTAACTGA
s panPan2.chr15              74119862 16 -  99763055 GCACCCTCCTAACTGA
i panPan2.chr15             T 54 C 0
s gorGor5.CYUI01000141v1       163752 16 -    281578 GCACCATCCTAACTGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023516 16 + 121039945 GCACCCTCCTAACTGA
i nomLeu3.chr6              C 0 T 54
s macFas5.chr7              165654524 16 - 171882078 ACACCCTCCTAATTGA
i macFas5.chr7              C 0 T 43
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609  0 +   3831555 C
e otoGar3.GL873689             471072  0 +   3845361 C
e cebCap1.NW_016107707v1       387243  0 -   2086007 C
e panTro5.chr15               9585948 1303 +  83230942 I
e colAng1.NW_012115278v1       498067  0 -   4457520 C
e manLeu1.NW_012102332v1       518791  0 -   3636681 C
e cerAty1.NW_012001462v1       466039  0 +   4116138 C
e macNem1.NW_012011934v1       508868  0 +   2379783 C
e rheMac8.chr7              164333530  0 - 169600520 C
e chlSab2.chr26              53898337  0 +  58131712 C
e saiBol1.JH378292             361011  0 -   2682657 C
e calJac3.chr6              154529177  0 - 158406734 C

a score=6045.000000
s hg38.chr15_KI270851v1_alt    199889 11 +    263054 GGTCTGGTGGG
s panPan2.chr15              74119878 11 -  99763055 GGTCTAGTGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163768 11 -    281578 GGTCTGGTGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023478 11 + 121039945 GGTCTGGTGGG
i nomLeu3.chr6              T 54 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609  0 +   3831555 C
e otoGar3.GL873689             471072  0 +   3845361 C
e cebCap1.NW_016107707v1       387243  0 -   2086007 C
e panTro5.chr15               9585948 1303 +  83230942 I
e colAng1.NW_012115278v1       498067  0 -   4457520 C
e manLeu1.NW_012102332v1       518791  0 -   3636681 C
e cerAty1.NW_012001462v1       466039  0 +   4116138 C
e macNem1.NW_012011934v1       508868  0 +   2379783 C
e rheMac8.chr7              164333530  0 - 169600520 C
e chlSab2.chr26              53898337  0 +  58131712 C
e saiBol1.JH378292             361011  0 -   2682657 C
e calJac3.chr6              154529177  0 - 158406734 C
e macFas5.chr7              165654540 43 - 171882078 T

a score=3910.000000
s hg38.chr15_KI270851v1_alt    199900 4 +    263054 AGCC
s panPan2.chr15              74119889 4 -  99763055 AGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163779 4 -    281578 AGCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023489 4 + 121039945 AGCC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165654497 4 - 171882078 AGCC
i macFas5.chr7              T 43 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609 0 +   3831555 C
e otoGar3.GL873689             471072 0 +   3845361 C
e cebCap1.NW_016107707v1       387243 0 -   2086007 C
e panTro5.chr15               9585948 1303 +  83230942 I
e colAng1.NW_012115278v1       498067 0 -   4457520 C
e manLeu1.NW_012102332v1       518791 0 -   3636681 C
e cerAty1.NW_012001462v1       466039 0 +   4116138 C
e macNem1.NW_012011934v1       508868 0 +   2379783 C
e rheMac8.chr7              164333530 0 - 169600520 C
e chlSab2.chr26              53898337 0 +  58131712 C
e saiBol1.JH378292             361011 0 -   2682657 C
e calJac3.chr6              154529177 0 - 158406734 C

a score=18842.000000
s hg38.chr15_KI270851v1_alt    199904 38 +    263054 ATGGAAGGACCAGGGCAGGGCAGGCACCCTCCTAACTG
s panPan2.chr15              74119893 38 -  99763055 ATGGAAGGACCAGGGCAGGGCACACACCCTGGTAACTG
i panPan2.chr15             C 0 T 108
s nomLeu3.chr6               71023493 38 + 121039945 ATGGAAGGACCAGGGCAGGGCATGCACCCTCCTAACTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165654501 38 - 171882078 ATGGAAGGACCAGGGCAGGGCACACACCCTCCTAATTG
i macFas5.chr7              C 0 T 53
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609  0 +   3831555 C
e otoGar3.GL873689             471072  0 +   3845361 C
e cebCap1.NW_016107707v1       387243  0 -   2086007 C
e panTro5.chr15               9585948 1303 +  83230942 I
e gorGor5.CYUI01000141v1       163783  0 -    281578 C
e colAng1.NW_012115278v1       498067  0 -   4457520 C
e manLeu1.NW_012102332v1       518791  0 -   3636681 C
e cerAty1.NW_012001462v1       466039  0 +   4116138 C
e macNem1.NW_012011934v1       508868  0 +   2379783 C
e rheMac8.chr7              164333530  0 - 169600520 C
e chlSab2.chr26              53898337  0 +  58131712 C
e saiBol1.JH378292             361011  0 -   2682657 C
e calJac3.chr6              154529177  0 - 158406734 C

a score=2465.000000
s hg38.chr15_KI270851v1_alt    199942 9 +    263054 AGGTCTGCT
s panPan2.chr15              74119823 9 -  99763055 AGGTCTGAT
i panPan2.chr15             T 108 C 0
s nomLeu3.chr6               71023531 9 + 121039945 ATCTCTACT
i nomLeu3.chr6              C 0 T 54
s macFas5.chr7              165654486 9 - 171882078 AGGTCTGGT
i macFas5.chr7              T 53 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609 0 +   3831555 C
e otoGar3.GL873689             471072 0 +   3845361 C
e cebCap1.NW_016107707v1       387243 0 -   2086007 C
e panTro5.chr15               9585948 1303 +  83230942 I
e gorGor5.CYUI01000141v1       163783 0 -    281578 C
e colAng1.NW_012115278v1       498067 0 -   4457520 C
e manLeu1.NW_012102332v1       518791 0 -   3636681 C
e cerAty1.NW_012001462v1       466039 0 +   4116138 C
e macNem1.NW_012011934v1       508868 0 +   2379783 C
e rheMac8.chr7              164333530 0 - 169600520 C
e chlSab2.chr26              53898337 0 +  58131712 C
e saiBol1.JH378292             361011 0 -   2682657 C
e calJac3.chr6              154529177 0 - 158406734 C

a score=24621.000000
s hg38.chr15_KI270851v1_alt    199951 45 +    263054 GGGAGCCATGGAAGGACCAGGGCAGGGCACGCACCCTCCTAACTG
s panPan2.chr15              74119832 45 -  99763055 GGGAGCCATGGAAGGACCAGGGCAGGGCACGCACCCTCCTAACTG
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               71023486 45 + 121039945 GGGAGCCATGGAAGGACCAGGGCAGGGCATGCACCCTCCTAACTG
i nomLeu3.chr6              T 54 T 54
s macFas5.chr7              165654495 44 - 171882078 -GGAGCCATGGAAGGACCAGGGCAGGGCACACACCCTCCTAATTG
i macFas5.chr7              C 0 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609  0 +   3831555 C
e otoGar3.GL873689             471072  0 +   3845361 C
e cebCap1.NW_016107707v1       387243  0 -   2086007 C
e panTro5.chr15               9585948 1303 +  83230942 I
e gorGor5.CYUI01000141v1       163783  0 -    281578 C
e colAng1.NW_012115278v1       498067  0 -   4457520 C
e manLeu1.NW_012102332v1       518791  0 -   3636681 C
e cerAty1.NW_012001462v1       466039  0 +   4116138 C
e macNem1.NW_012011934v1       508868  0 +   2379783 C
e rheMac8.chr7              164333530  0 - 169600520 C
e chlSab2.chr26              53898337  0 +  58131712 C
e saiBol1.JH378292             361011  0 -   2682657 C
e calJac3.chr6              154529177  0 - 158406734 C

a score=546.000000
s hg38.chr15_KI270851v1_alt    199996 1 +    263054 A
s panPan2.chr15              74119877 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               71023477 1 + 121039945 A
i nomLeu3.chr6              T 54 C 0
s macFas5.chr7              165654539 1 - 171882078 A
i macFas5.chr7              C 0 T 43
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609 0 +   3831555 C
e otoGar3.GL873689             471072 0 +   3845361 C
e cebCap1.NW_016107707v1       387243 0 -   2086007 C
e panTro5.chr15               9585948 1303 +  83230942 I
e gorGor5.CYUI01000141v1       163783 0 -    281578 C
e colAng1.NW_012115278v1       498067 0 -   4457520 C
e manLeu1.NW_012102332v1       518791 0 -   3636681 C
e cerAty1.NW_012001462v1       466039 0 +   4116138 C
e macNem1.NW_012011934v1       508868 0 +   2379783 C
e rheMac8.chr7              164333530 0 - 169600520 C
e chlSab2.chr26              53898337 0 +  58131712 C
e saiBol1.JH378292             361011 0 -   2682657 C
e calJac3.chr6              154529177 0 - 158406734 C

a score=2957.000000
s hg38.chr15_KI270851v1_alt    199997 11 +    263054 GGTCTGGTGGG
s panPan2.chr15              74119878 11 -  99763055 GGTCTAGTGGG
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               71023478 11 + 121039945 GGTCTGGTGGG
i nomLeu3.chr6              C 0 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609  0 +   3831555 C
e otoGar3.GL873689             471072  0 +   3845361 C
e cebCap1.NW_016107707v1       387243  0 -   2086007 C
e panTro5.chr15               9585948 1303 +  83230942 I
e gorGor5.CYUI01000141v1       163783  0 -    281578 C
e colAng1.NW_012115278v1       498067  0 -   4457520 C
e manLeu1.NW_012102332v1       518791  0 -   3636681 C
e cerAty1.NW_012001462v1       466039  0 +   4116138 C
e macNem1.NW_012011934v1       508868  0 +   2379783 C
e rheMac8.chr7              164333530  0 - 169600520 C
e chlSab2.chr26              53898337  0 +  58131712 C
e saiBol1.JH378292             361011  0 -   2682657 C
e calJac3.chr6              154529177  0 - 158406734 C
e macFas5.chr7              165654540 43 - 171882078 T

a score=1953.000000
s hg38.chr15_KI270851v1_alt    200008 4 +    263054 AGCT
s panPan2.chr15              74119889 4 -  99763055 AGCC
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               71023489 4 + 121039945 AGCC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165654497 4 - 171882078 AGCC
i macFas5.chr7              T 43 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609 0 +   3831555 C
e otoGar3.GL873689             471072 0 +   3845361 C
e cebCap1.NW_016107707v1       387243 0 -   2086007 C
e panTro5.chr15               9585948 1303 +  83230942 I
e gorGor5.CYUI01000141v1       163783 0 -    281578 C
e colAng1.NW_012115278v1       498067 0 -   4457520 C
e manLeu1.NW_012102332v1       518791 0 -   3636681 C
e cerAty1.NW_012001462v1       466039 0 +   4116138 C
e macNem1.NW_012011934v1       508868 0 +   2379783 C
e rheMac8.chr7              164333530 0 - 169600520 C
e chlSab2.chr26              53898337 0 +  58131712 C
e saiBol1.JH378292             361011 0 -   2682657 C
e calJac3.chr6              154529177 0 - 158406734 C

a score=13460.000000
s hg38.chr15_KI270851v1_alt    200012 14 +    263054 ATGGAAGGACCAGG
s panPan2.chr15              74119893 14 -  99763055 ATGGAAGGACCAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163783 14 -    281578 ATGGAAGGACCAGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023493 14 + 121039945 ATGGAAGGACCAGG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165654501 14 - 171882078 ATGGAAGGACCAGG
i macFas5.chr7              C 0 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609  0 +   3831555 C
e otoGar3.GL873689             471072  0 +   3845361 C
e cebCap1.NW_016107707v1       387243  0 -   2086007 C
e panTro5.chr15               9585948 1303 +  83230942 I
e colAng1.NW_012115278v1       498067  0 -   4457520 C
e manLeu1.NW_012102332v1       518791  0 -   3636681 C
e cerAty1.NW_012001462v1       466039  0 +   4116138 C
e macNem1.NW_012011934v1       508868  0 +   2379783 C
e rheMac8.chr7              164333530  0 - 169600520 C
e chlSab2.chr26              53898337  0 +  58131712 C
e saiBol1.JH378292             361011  0 -   2682657 C
e calJac3.chr6              154529177  0 - 158406734 C

a score=29901.000000
s hg38.chr15_KI270851v1_alt    200026 24 +    263054 GCAGGGCACGCACCCTCCTAACTG
s panTro5.chr15               9587251 24 +  83230942 GCAGGGCATGCACCCTCCTAACTG
i panTro5.chr15             I 1303 C 0
s panPan2.chr15              74119907 24 -  99763055 GCAGGGCACACACCCTGGTAACTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163797 24 -    281578 GCAGGGCACGCACCCTCCTAACTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023507 24 + 121039945 GCAGGGCATGCACCCTCCTAACTG
i nomLeu3.chr6              C 0 T 54
s macFas5.chr7              165654515 24 - 171882078 GCAGGGCACACACCCTCCTAATTG
i macFas5.chr7              C 0 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609  0 +   3831555 C
e otoGar3.GL873689             471072  0 +   3845361 C
e cebCap1.NW_016107707v1       387243  0 -   2086007 C
e colAng1.NW_012115278v1       498067  0 -   4457520 C
e manLeu1.NW_012102332v1       518791  0 -   3636681 C
e cerAty1.NW_012001462v1       466039  0 +   4116138 C
e macNem1.NW_012011934v1       508868  0 +   2379783 C
e rheMac8.chr7              164333530  0 - 169600520 C
e chlSab2.chr26              53898337  0 +  58131712 C
e saiBol1.JH378292             361011  0 -   2682657 C
e calJac3.chr6              154529177  0 - 158406734 C

a score=8085.000000
s hg38.chr15_KI270851v1_alt    200050 9 +    263054 AGGTCTGCT
s panTro5.chr15               9587275 9 +  83230942 AGGTCTGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74119931 9 -  99763055 AGGTCTGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163821 9 -    281578 AGGTCTGGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023477 9 + 121039945 AGGTCTGGT
i nomLeu3.chr6              T 54 C 0
s macFas5.chr7              165654539 9 - 171882078 ATCTCTACT
i macFas5.chr7              C 0 T 51
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609 0 +   3831555 C
e otoGar3.GL873689             471072 0 +   3845361 C
e cebCap1.NW_016107707v1       387243 0 -   2086007 C
e colAng1.NW_012115278v1       498067 0 -   4457520 C
e manLeu1.NW_012102332v1       518791 0 -   3636681 C
e cerAty1.NW_012001462v1       466039 0 +   4116138 C
e macNem1.NW_012011934v1       508868 0 +   2379783 C
e rheMac8.chr7              164333530 0 - 169600520 C
e chlSab2.chr26              53898337 0 +  58131712 C
e saiBol1.JH378292             361011 0 -   2682657 C
e calJac3.chr6              154529177 0 - 158406734 C

a score=3000.000000
s hg38.chr15_KI270851v1_alt    200059 3 +    263054 GGG
s panTro5.chr15               9587284 3 +  83230942 GGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74119940 3 -  99763055 GGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163830 3 -    281578 GGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023486 3 + 121039945 GGG
i nomLeu3.chr6              C 0 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609 0 +   3831555 C
e otoGar3.GL873689             471072 0 +   3845361 C
e cebCap1.NW_016107707v1       387243 0 -   2086007 C
e colAng1.NW_012115278v1       498067 0 -   4457520 C
e manLeu1.NW_012102332v1       518791 0 -   3636681 C
e cerAty1.NW_012001462v1       466039 0 +   4116138 C
e macNem1.NW_012011934v1       508868 0 +   2379783 C
e rheMac8.chr7              164333530 0 - 169600520 C
e chlSab2.chr26              53898337 0 +  58131712 C
e saiBol1.JH378292             361011 0 -   2682657 C
e calJac3.chr6              154529177 0 - 158406734 C
e macFas5.chr7              165654548 51 - 171882078 T

a score=35699.000000
s hg38.chr15_KI270851v1_alt    200062 27 +    263054 AGCCATGGAAGGACCAGGGCAGGGCAT
s panTro5.chr15               9587287 27 +  83230942 AGCCATGGAAGGACCAGGGCAGGTTAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74119943 27 -  99763055 AGCCATGGAAGGACCAGGGCAGGGCAT
i panPan2.chr15             C 0 T 54
s gorGor5.CYUI01000141v1       163833 27 -    281578 AGCTATGGAAGGACCAGGGCAGGGCAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023489 27 + 121039945 AGCCATGGAAGGACCAGGGCAGGGCAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165654497 27 - 171882078 AGCCATGGAAGGACCAGGGCAGGGCAC
i macFas5.chr7              T 51 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609  0 +   3831555 C
e otoGar3.GL873689             471072  0 +   3845361 C
e cebCap1.NW_016107707v1       387243  0 -   2086007 C
e colAng1.NW_012115278v1       498067  0 -   4457520 C
e manLeu1.NW_012102332v1       518791  0 -   3636681 C
e cerAty1.NW_012001462v1       466039  0 +   4116138 C
e macNem1.NW_012011934v1       508868  0 +   2379783 C
e rheMac8.chr7              164333530  0 - 169600520 C
e chlSab2.chr26              53898337  0 +  58131712 C
e saiBol1.JH378292             361011  0 -   2682657 C
e calJac3.chr6              154529177  0 - 158406734 C

a score=17579.000000
s hg38.chr15_KI270851v1_alt    200089 15 +    263054 GCACCCTCCTAACTG
s panTro5.chr15               9587314 15 +  83230942 GCACCCTCCTAACTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74119916 15 -  99763055 ACACCCTGGTAACTG
i panPan2.chr15             T 54 C 0
s gorGor5.CYUI01000141v1       163860 15 -    281578 ACACCCTCCTAACTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023516 15 + 121039945 GCACCCTCCTAACTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              165654524 15 - 171882078 ACACCCTCCTAATTG
i macFas5.chr7              C 0 T 53
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609  0 +   3831555 C
e otoGar3.GL873689             471072  0 +   3845361 C
e cebCap1.NW_016107707v1       387243  0 -   2086007 C
e colAng1.NW_012115278v1       498067  0 -   4457520 C
e manLeu1.NW_012102332v1       518791  0 -   3636681 C
e cerAty1.NW_012001462v1       466039  0 +   4116138 C
e macNem1.NW_012011934v1       508868  0 +   2379783 C
e rheMac8.chr7              164333530  0 - 169600520 C
e chlSab2.chr26              53898337  0 +  58131712 C
e saiBol1.JH378292             361011  0 -   2682657 C
e calJac3.chr6              154529177  0 - 158406734 C

a score=7908.000000
s hg38.chr15_KI270851v1_alt    200104 9 +    263054 AGGTCTGCT
s panTro5.chr15               9587329 9 +  83230942 AGGTCTAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74119931 9 -  99763055 AGGTCTGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163875 9 -    281578 AGGTCTGCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023531 9 + 121039945 ATCTCTACT
i nomLeu3.chr6              C 0 T 54
s macFas5.chr7              165654486 9 - 171882078 AGGTCTGGT
i macFas5.chr7              T 53 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609 0 +   3831555 C
e otoGar3.GL873689             471072 0 +   3845361 C
e cebCap1.NW_016107707v1       387243 0 -   2086007 C
e colAng1.NW_012115278v1       498067 0 -   4457520 C
e manLeu1.NW_012102332v1       518791 0 -   3636681 C
e cerAty1.NW_012001462v1       466039 0 +   4116138 C
e macNem1.NW_012011934v1       508868 0 +   2379783 C
e rheMac8.chr7              164333530 0 - 169600520 C
e chlSab2.chr26              53898337 0 +  58131712 C
e saiBol1.JH378292             361011 0 -   2682657 C
e calJac3.chr6              154529177 0 - 158406734 C

a score=67938.000000
s hg38.chr15_KI270851v1_alt    200113 54 +    263054 GGGAGCCATGGAAGGACCAGGGCAGGGCACACACCCTCCTAACTGAGGTCTGCT
s panTro5.chr15               9587338 54 +  83230942 GGGAGCCATGGAAGGACCAGGGCAGGGCATGCACCCTCCTAACTGAGGTCTGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74119940 54 -  99763055 GGGAGCCATGGAAGGACCAGGGCAGGGCATGCACCCTCCTAACTGAGGTCTGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163884 54 -    281578 GGGAGCCATGGAAGGACCAAGGCAGGGCATGCACCCTCCTAACTGAGGTCTGGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023486 54 + 121039945 GGGAGCCATGGAAGGACCAGGGCAGGGCATGCACCCTCCTAACTGATCTCTACT
i nomLeu3.chr6              T 54 T 26
s macFas5.chr7              165654495 53 - 171882078 -GGAGCCATGGAAGGACCAGGGCAGGGCACACACCCTCCTAATTGATCTCTACT
i macFas5.chr7              C 0 T 26
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609  0 +   3831555 C
e otoGar3.GL873689             471072  0 +   3845361 C
e cebCap1.NW_016107707v1       387243  0 -   2086007 C
e colAng1.NW_012115278v1       498067  0 -   4457520 C
e manLeu1.NW_012102332v1       518791  0 -   3636681 C
e cerAty1.NW_012001462v1       466039  0 +   4116138 C
e macNem1.NW_012011934v1       508868  0 +   2379783 C
e rheMac8.chr7              164333530  0 - 169600520 C
e chlSab2.chr26              53898337  0 +  58131712 C
e saiBol1.JH378292             361011  0 -   2682657 C
e calJac3.chr6              154529177  0 - 158406734 C

a score=600.000000
s hg38.chr15_KI270851v1_alt    200167 1 +    263054 G
s panTro5.chr15               9587392 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74119994 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163938 1 -    281578 G
i gorGor5.CYUI01000141v1    C 0 C 0
e mm10.chr7                  56146386 84 + 145441459 I
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609 0 +   3831555 C
e otoGar3.GL873689             471072 0 +   3845361 C
e cebCap1.NW_016107707v1       387243 0 -   2086007 C
e nomLeu3.chr6               71023540 26 + 121039945 T
e colAng1.NW_012115278v1       498067 0 -   4457520 C
e manLeu1.NW_012102332v1       518791 0 -   3636681 C
e cerAty1.NW_012001462v1       466039 0 +   4116138 C
e macNem1.NW_012011934v1       508868 0 +   2379783 C
e rheMac8.chr7              164333530 0 - 169600520 C
e chlSab2.chr26              53898337 0 +  58131712 C
e saiBol1.JH378292             361011 0 -   2682657 C
e calJac3.chr6              154529177 0 - 158406734 C
e macFas5.chr7              165654548 26 - 171882078 T

a score=29885.000000
s hg38.chr15_KI270851v1_alt    200168 6 +    263054 GGAGCC
s panTro5.chr15               9587393 6 +  83230942 GGAGCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74119995 6 -  99763055 GGAGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163939 6 -    281578 GGAGCC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164333530 6 - 169600520 GGAGCC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011934v1       508868 6 +   2379783 GGAGCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       466039 6 +   4116138 GGAGCC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53898337 6 +  58131712 GGAGCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518791 6 -   3636681 GGAGCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       498067 6 -   4457520 GGAGCC
i colAng1.NW_012115278v1    C 0 C 0
s mm10.chr7                  56146470 6 + 145441459 GGAACT
i mm10.chr7                 I 84 C 0
e proCoq1.NW_012148396v1     13520539 430 +  16154928 I
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609 0 +   3831555 C
e otoGar3.GL873689             471072 0 +   3845361 C
e cebCap1.NW_016107707v1       387243 0 -   2086007 C
e nomLeu3.chr6               71023540 26 + 121039945 T
e saiBol1.JH378292             361011 0 -   2682657 C
e calJac3.chr6              154529177 0 - 158406734 C
e macFas5.chr7              165654548 26 - 171882078 T

a score=10670.000000
s hg38.chr15_KI270851v1_alt    200174 2 +    263054 AT
s panTro5.chr15               9587399 2 +  83230942 AT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74120001 2 -  99763055 AT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163945 2 -    281578 AT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164333536 2 - 169600520 AT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011934v1       508874 2 +   2379783 AT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       466045 2 +   4116138 AT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53898343 2 +  58131712 GT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518797 2 -   3636681 AT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       498073 2 -   4457520 AT
i colAng1.NW_012115278v1    C 0 C 0
s proCoq1.NW_012148396v1     13520969 2 +  16154928 AT
i proCoq1.NW_012148396v1    I 430 C 0
s mm10.chr7                  56146476 2 + 145441459 AT
i mm10.chr7                 C 0 C 0
e dasNov3.JH562051             433162 117 +    563711 I
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609 0 +   3831555 C
e otoGar3.GL873689             471072 0 +   3845361 C
e cebCap1.NW_016107707v1       387243 0 -   2086007 C
e nomLeu3.chr6               71023540 26 + 121039945 T
e saiBol1.JH378292             361011 0 -   2682657 C
e calJac3.chr6              154529177 0 - 158406734 C
e macFas5.chr7              165654548 26 - 171882078 T

a score=117030.000000
s hg38.chr15_KI270851v1_alt    200176 18 +    263054 GGAAGGACCAGGGCAGGT
s panTro5.chr15               9587401 18 +  83230942 GGAAGGACCAGGGCAGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74120003 18 -  99763055 GGAAGGACCAGGGCAGGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163947 18 -    281578 GGAAGGACCAGGGCAGGT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164333538 18 - 169600520 GGAAGGACCAGGGCAGGG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011934v1       508876 18 +   2379783 GGAAGGACCAGGGCAGGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       466047 18 +   4116138 GGAAGGACCAGGGCAGGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53898345 18 +  58131712 GGAAGGACCAGGGCAGGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518799 18 -   3636681 GGAAGGACCAGGGCAGGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       498075 18 -   4457520 GGAAGGACCAGGGCAGGG
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       387243 18 -   2086007 GGAAGGACCAGGGCAGAC
i cebCap1.NW_016107707v1    C 0 C 0
s proCoq1.NW_012148396v1     13520971 18 +  16154928 GGAGGGACCAGGGCAGGG
i proCoq1.NW_012148396v1    C 0 C 0
s mm10.chr7                  56146478 18 + 145441459 GGTGTGTCCAGAATAGGA
i mm10.chr7                 C 0 C 0
s dasNov3.JH562051             433279 18 +    563711 GGAGAGGCTGAAGCAGTG
i dasNov3.JH562051          I 117 C 0
e canFam3.chr3               60049154 175 -  91889043 I
e aotNan1.NW_018503298v1       448609  0 +   3831555 C
e otoGar3.GL873689             471072  0 +   3845361 C
e nomLeu3.chr6               71023540 26 + 121039945 T
e saiBol1.JH378292             361011  0 -   2682657 C
e calJac3.chr6              154529177  0 - 158406734 C
e macFas5.chr7              165654548 26 - 171882078 T

a score=-2950.000000
s hg38.chr15_KI270851v1_alt    200194 1 +    263054 -T
s panTro5.chr15               9587419 1 +  83230942 -T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74120021 1 -  99763055 -T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163965 1 -    281578 -T
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164333556 1 - 169600520 -C
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011934v1       508894 1 +   2379783 -C
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       466065 1 +   4116138 -C
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53898363 1 +  58131712 -C
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518817 1 -   3636681 -C
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       498093 1 -   4457520 -C
i colAng1.NW_012115278v1    C 0 C 0
s proCoq1.NW_012148396v1     13520989 1 +  16154928 -C
i proCoq1.NW_012148396v1    C 0 C 0
s mm10.chr7                  56146496 1 + 145441459 -C
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60049329 1 -  91889043 -C
i canFam3.chr3              I 175 C 0
s dasNov3.JH562051             433297 1 +    563711 G-
i dasNov3.JH562051          C 0 C 0
e aotNan1.NW_018503298v1       448609 0 +   3831555 C
e otoGar3.GL873689             471072 0 +   3845361 C
e cebCap1.NW_016107707v1       387261 0 -   2086007 C
e nomLeu3.chr6               71023540 26 + 121039945 T
e saiBol1.JH378292             361011 0 -   2682657 C
e calJac3.chr6              154529177 0 - 158406734 C
e macFas5.chr7              165654548 26 - 171882078 T

a score=56584.000000
s hg38.chr15_KI270851v1_alt    200195 5 +    263054 ACGCA
s panTro5.chr15               9587420 5 +  83230942 ACGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74120022 5 -  99763055 ACGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163966 5 -    281578 ACGCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023514 5 + 121039945 ATGCA
i nomLeu3.chr6              T 26 C 0
s rheMac8.chr7              164333557 5 - 169600520 ACACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165654522 5 - 171882078 ACACA
i macFas5.chr7              T 26 C 0
s macNem1.NW_012011934v1       508895 5 +   2379783 ACACA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       466066 5 +   4116138 ACACA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53898364 5 +  58131712 ACACA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518818 5 -   3636681 ACACA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       498094 5 -   4457520 ACACG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154529177 5 - 158406734 ACACA
i calJac3.chr6              C 0 I 1
s cebCap1.NW_016107707v1       387261 5 -   2086007 ACACC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       448609 5 +   3831555 ACACA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13520990 5 +  16154928 ACACA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             471072 5 +   3845361 ACATG
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56146497 5 + 145441459 ACACA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60049330 5 -  91889043 ATATG
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             433298 5 +    563711 ATGTA
i dasNov3.JH562051          C 0 C 0
e saiBol1.JH378292             361011 0 -   2682657 C

a score=4460990.000000
s hg38.chr15_KI270851v1_alt    200200 262 +    263054 CCCTCCTAACTGATCTCTACTTTGGCTTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGACGGGTGGATAAGAGTCCAGTGGGACACAGGCAGCACCAACTCCTACAGGATGGGGAAAGAAGGAAAATACGACCTCAAGCTGGCAGAGCTGCCAGCCCCTGCACAGCCCTCAGCAGAGGATTCGGACACAGAGGACGACTCTGGTGGGTGACTCAGGAAGGTGTTTAGTCC-AAGGCAG
s panTro5.chr15               9587425 262 +  83230942 CCCTCCTAACTGATCTCTACTTTGGCTTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGACGGGTGGATAAGAGTCCAGTGGGACACGGGCAGCACCAACTCCTACAAGATGGGGAAAGAAGGAAAATACGACCTCAAGCTGGCAGAGCTGCCAGCCCCTGCACAGCCCTCAGCAGAGGATTCGGACACAGAGGACGACTCTGGTGGGTGACTCAGGAAGGTGTTTAGTCC-AAGGCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74120027 262 -  99763055 CCCTCCTAACTGATCTCTACTTTGGCTTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGACGGGTGGATAAGAGTCCAGTGGGACACGGGCAGCACCAACTCCTATAGGATGGGGAAAGAAGGAAAATACGACCTCAAGCTGGCAGAGCTGCCGGCTGCTGCACAGCCCTCAGCAGAGGATTCGGACACAGAGGACGACTCTGGTGGGTGACTCAGGAAGGTGTTTAGTCC-AAGGCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       163971 262 -    281578 CCCTCCTAACTGATCTCTACTTTGGCTTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGACGGGTGGATAAGAGTCCAGTGGGACACGGGCAGCACCAACTCCTACAGGATGGGGAAAGAAGGAAAATACGACCTCAAGCTGGCAGAGCTGCCGGCTGCTGCACAGCCCTCAGCAGAGGATTCGGACACAGAGGACGACTCTGGTGGGTGACTCAGGAAGGTGTTTAGTCC-AAGGCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023519 262 + 121039945 CCCTCCTAACTGATCTCTACTTTGGCTTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGATGGGTGGATAAGAGTCCAGTGGGACACGGGCAGCACCAACTCCTACAGGATGGGGAAAGAAGGAAAATACGACCTCAAGCTGGCAGAGCTGCCGGCCGCTGCACAGCCCTCAGCAGAGGACTCGGACACAGAGGACGACTCTGGTGGGTGACTCAGGAAGGCGTTTAGTCC-AAGGCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164333562 261 - 169600520 CCCTCCTAATTGATCTCTACTTTGG-TTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGACGGGTGGATAAGAGTCCAGTGGGACACGGGCAGCACCAACTCCTACAGGATGGGGAAAGAAGGAAAATATGACCTCAAGCTGGCAGAGCTGCCGGCCGCTGCACAGCCCTCAGCAGAGGACTCGGACACAGAGGACGACTCTGGTGGGTGACTCAGGAAGGCGTTTAGTCC-AAGGCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165654527 261 - 171882078 CCCTCCTAATTGATCTCTACTTTGG-TTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGACGGGTGGATAAGAGTCCAGTGGGACACGGGCAGCACCAACTCCTACAGGATGGGGAAAGAAGGAAAATATGACCTCAAGCTGGCAGAGCTGCCGGCCGCTGCACAGCCCTCAGCAGAGGACTCGGACACAGAGGACGACTCTGGTGGGTGACTCAGGAAGGCGTTTAGTCC-AAGGCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       508900 261 +   2379783 CCCTCCTAATTGATCTCTACTTTGG-TTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGACGGGTGGATAAGAGTCCAGTGGGACACGGGCAGCACCAACTCCTACAGGATGGGGAAAGAAGGAAAATATGACCTCAAGCTGGCAGAGCTGCCGGCCGCTGCACAGCCCTCAGCAGAGGACTCGGACACAGAGGACGACTCTGGTGGGTGACTCAGGAAGGCGTTTAGTCC-AAGGCAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       466071 261 +   4116138 CCCTCCTAATTGATCTCTACTTTGG-TTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGACGGGTGGATAAGAGTCCAGTGGGACACGGGCAGCACCAACTCCTACAGGATGGGGAAAGAAGGAAAATATGACCTCAAGCTGGCAGAGCTGCCGGCCGCTGCACAGCCCTCAGCAGAGGACTCGGACACAGAGGACGACTCTGGTGGGTGACTCAGGAAGGCATTTAGTCC-AAGGCAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53898369 261 +  58131712 CCCTCCTAATTGATCTCTACTTTGG-TTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGACGGGTGGATAAGAGTCCAGTGGGACACGGGCAGCACCAACTCCTACAGGATGGGGAAAGAAGGAAAATATGACCTCAAGCTGGCAGAGCTGCCGGCCGCTGCACAGCCCTCAGCAGAGGACTCGGACACAGAGGATGACTCTGGTGAGTGACTCAGGAAGGCGTTTAGTCC-AAGGCAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       518823 261 -   3636681 CCCTCCTAATTGATCTCTACTTTGG-TTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGACGGGTGGATAAGAGTCCAGTGGGACACGGGCAGCACCAACTCCTACAGGATGGGGAAAGAAGGAAAATATGACCTCAAGCTGGCAGAGCTGCCGGCCGCTGCACAGCCCTCAGCAGAGGACTCGGACACAGAGGACGACTCTGGTGGGTGACTCAGGAAGGCGTTTAGTCC-AAGGCAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       498099 261 -   4457520 CCCTCCTAACTGATCTCTACTTTGG-TTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGACGGGTGGATAAGAGTCCAGTGGGACACGGGCAGCACCAACTCCTACAGGATGGGGAAAGAAGGAAAATATGACCTCAAGCTGGCAGAGCTGCCGGCCGCTGCACAGCCCTCAGCAGAGGACTCGGACACAGAGGACGATTCTGGTGGGTGACTCAGGAAGGCGTTTAGTCC-AAGGCAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154529183 262 - 158406734 CCCTCCTAACTGATCTTTCCTCTGGCTTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGACGGGTGGATAAGGGTCCAGTGGGACACGGGAAGCACCAACTCCTACAGGATGGGGAAAGAAGGAAAATATGACCTCAAGCTGGCAGAGCTCCCGGCCGCAGCACAGCCCTCAGCAGAGGACTCGGACACGGAGGACGACTCTGGTGGGTGACTCAGGAAGGTGGTTAGGCC-AAGGCAG
i calJac3.chr6              I 1 C 0
s saiBol1.JH378292             361011 262 -   2682657 CCCTCCTAACTGATCTTTCCTCTGACTTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGACGGGTGGATAAGGGTCCAGTGGGACACGGGCAGCACCAACTCCTATAGGATGGGGAAAGAAGGAAAATACGACCTCAAGCTGGCAGAGCTGCCGGCCGCGGCACAGCCCTCAGCAGAGGACTCGGACACGGAGGACGACTCTGGTGGGTAACTCGGCGCGGTGGTTAGGCC-AAGGCGG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       387266 262 -   2086007 CCCTCCTAACTGATGTTTCCTCTGACTTTCTCAGGACGGACCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGACGGATGGATAAGGGTCCAGTGGGACACGGGCAGCACCAACTCCTACAGGATGGGGAAAGAAGGAAAATACGACCTCAAGCTGGCAGAGCTGCCGGCCGCGGCACAGCCCTCAGCAGAGGACTCGGACACAGAGGACGACTCTGGTGGGTGACTCAGGGAGGTGGTTCAGCC-AAGGCAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       448614 262 +   3831555 CACCCCCAACTGATCTTTCCTCTGGCTTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGACGGGTGGATAAGGGTCCAGTGGGACACGGGCAGCACCAACTCCTACAGGATGGGGAAAGAAGGAAAATACGACCTCAAGCTGGCAGAGCTGCCGGCCGCGGCACAGCCCTCAGCAGAGGACTCGGACACGGAGGACGACTCTGGTGAGTGACTCAGGAAGGTGGTTAGGTC-AAGGCAG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13520995 262 +  16154928 CCCTCTTAATGGATCTTTATTTTGGCTTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGATGGGTGGATAAGGGTCCAGTGGGACACAGGCAGCACCAACTCGTACAGGATGGGGAAAGAAGGAAAGTATGACCTCAAGCTGGCGGAGCTGCCGGCCTCTGCACAGCCATCTGCAGAGGACTCGGACACAGAAGATGACTCAGGTGGGTGATTCATGGAGGCAGTTAGTCC-AAGACAG
i proCoq1.NW_012148396v1    C 0 I 348
s otoGar3.GL873689             471077 262 +   3845361 CCCTCTTCATGGATCTTTATTTTGACTTTCTCAGGATGGACCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAACTAGGAGAGGATGGATGGATACGGGTCCAGTGGGACACAGGCAGCACCAACTCCTACCGAATGGGGAAAGAAGGGAAATACGACCTCAAGCTGGCAGAGCTTCCGGCCTCTGCACAGCCCTCGGCGGAGGACTCGGACACAGAGGACGACTCTGGTGAGTGGTTCTTGGAGGCATCAAGTCC-AGGGCAG
i otoGar3.GL873689          C 0 I 1
s mm10.chr7                  56146502 262 + 145441459 CTCTCTTACCTGGTCTGTATTTTTACTCTTTCAGGATGGGCCTCCCCCAGGTCTAGGCCGGGTAATTGGTGAGCTGGGCGAGGATGGCTGGATCAGGGTCCAGTGGGACACAGGCAGCACTAACTCATACAGGATGGGAAAAGAAGGAAAATATGACCTCAAGCTGGTGGAGCTGCCTGTGTCATCACAGCCCTCTGCAGAGGATTCAGACACAGAGGATGACTCCGGTGGGTGACTCACAAAGTCTTGGAGTTC-AAGAGAG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60049335 261 -  91889043 CATTCTTAACTAATCTTTGTTTTGGCTTCCTCAGGATGGACCTCCTCCTGGTCTTGGCCGTGTGATTGGTGAACTGGGTGAGGACGGATGGATCAGGGTCCAGTGGGACACGGGCAGCACCAACTCCTACAGGATGGGGAAGGAGGGGAAGTATGACCTCAAGTTGGCAGAGCTGCCGGCCTCCACACAGCCCTCAGCAGAGGACTCGGACACAGAGGATGACTCTGGTCGGTACCTTGGG--GCTGTTTAGTCTGGGGGCAA
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             433303 261 +    563711 CCCTCTTAACTGACCTTTACTTTGGCTTTCTCAGGATGGACCTCCTCCTGGTCTAGGTCGTGTGATAGGTGAATTGGGAGAGGATGGATGGATCAGGGTCCAGTGGGACACGGGCAGCACGAACTCGTACAGAATGGGAAAAGAAGGGAAGTATGACCTCAAGCTGGCTGAGCTGCCACCATCCACGCAGCCTTCTGCTGAGGACTCGGACACAGAAGATGACTCCGGTAGGTGGC-AAGGATAGGGTTTATTTT-GGGGCAG
i dasNov3.JH562051          C 0 C 0

a score=759556.000000
s hg38.chr15_KI270851v1_alt    200462 76 +    263054 CCTA---CAAACTGT---CCAGT--TGCTGGG-TG-CTGCCACTGCCATCTGGGCCTTAGAATGGGATGTCAGGACACACCTGCAG
s panTro5.chr15               9587687 76 +  83230942 CCCA---CAAACTGT---CCAGG--TGCTGGC-TG-CCGCCACTGCCATCTGGGCCTTAGAATGGGATGTCAGGACGCATCCGCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74120289 76 -  99763055 CCTA---CAAACTGT---CCAGG--TGCTGGC-TG-CCGCCACTGCCATCTGGGCCTTAGAATGGGATGTCAGGACACACCTGCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       164233 76 -    281578 CCCA---CAAACTGT---CCAGG--TGCTGGC-TG-CCACCACTGTCATCTGGGCCTTAGAATGGGATGTCAGGACGTACCTGCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023781 76 + 121039945 CCCA---CAAACTGT---CCAGG--TGCTGGC-TG-CCACCACTGCCATCTGGGCCTTAGAATGGGATGTCAGGGCACACCTGCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164333823 76 - 169600520 CCCA---TAAACTGT---CCAGG--TGCTGGC-TG-CCACCACTGTCATCTGGGCATTAGAATGGGATATCAGGACGCACCTGCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165654788 76 - 171882078 CCCA---TAAACTGT---CCAGG--TGCTGGC-TG-CCACCACTGTCATCTGGGCATTAGAATGGGATATCAGGACGCACCTGCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       509161 76 +   2379783 CCCA---TAAACTGT---CCAGG--TGCTGGC-TG-CCACCACTGTCATCTGGGCATTAGAATGGGATATCAGGACGCACCTGCAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       466332 76 +   4116138 CCCA---TAAACTGT---CCAGG--TGCTGGC-TG-CCACCACTGTCATCTGGGCATTAGAATGGGATATCAGGACGCACCTGCAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53898630 76 +  58131712 CCCA---TAAACTGT---CCAGG--TGCTGGC-TG-CCACCACTGTCATCTAGGCATTAGAATGGGATATCAGGACGCACCTGCAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       519084 76 -   3636681 CCCA---TAAACTGT---CCAGG--TGCTGGC-TG-CCACCACTGTCATCTGGGCATTAGAATGGGATATCAGGACGCACCTGCAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       498360 76 -   4457520 CCCA---TAAACTGT---CCAGG--TGCTGGC-TG-CCACCACTGTCATCTGGGCATTAGAATGGGATGTCAGGATGCACCTGCAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154529445 75 - 158406734 CCCA---CAGACT-T---CCAGG--TGCTGGC-TG-CTGCCACTGCCATCTGGGCGTTAGAAGGGGATGTCGGGACACACCTGCAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             361273 60 -   2682657 CCCA---CAGGCTGT---CCAGG--------------------TGTCATCTGGGCGTTAGAAGGGGATGTCGGGACACACCTGCAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       387528 76 -   2086007 CCCA---CAGACTGT---CCAGG--TGCTGGC-TG-CTGCCACTGTCATCTGGGCGTTAGAGGGGGATGTCGGGACACGCCTGCAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       448876 76 +   3831555 CCCA---CAGACTGT---CCAGG--TGCTGGC-CC-CTGCTACTGTCATCTGGGTGTTAGAAGGGGATGTCGGGACACACCTGCAG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             471340 77 +   3845361 CTGG---CAAATTGT---CCAGG--TGCTGGC-TGACTATCATTTTCATGTGGGAAGTTAAACAGTGTGTCTGAGGTCATCTGTAG
i otoGar3.GL873689          I 1 C 0
s mm10.chr7                  56146764 77 + 145441459 --CAGGGCAAATTGC---TCATG--TGTTAGAGCA-CCATCATTTCCCCCTGGAAAGTT-AGTCAGTGGTCAGGATTCATCTGAAG
i mm10.chr7                 C 0 I 1766
s canFam3.chr3               60049597 76 -  91889043 CTGG---CAAGCTGTATGCTAAT--GGCAGCT-GG-CCATCCTTTtcatctgggaatgagaacag--tgtcag-actcagctacag
i canFam3.chr3              I 1 C 0
s dasNov3.JH562051             433564 66 +    563711 -----------CTTC---CAAAGATTGCTGTC-TG-TTGTTTTTGT--TGGGGATGTTAAAAAAATATGTTGGGGTGCA--TGCAG
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13521257 348 +  16154928 I

a score=2261634.000000
s hg38.chr15_KI270851v1_alt    200538 247 +    263054 CTGGCGCTC---------------TGT-------------CCTCGGAACCTGTAAT-TTAAATAAGCTCCCAGGCACCTCCGATGCAGGTGTGTGGAG--TGACTGTGGGATCCGGCGATCTGGCTGGAACTGAC-TTTCTGCA-TTTTCCTCTCATGTGTGCACCCGCCCC--TCTTTGAGAAT----GTGGT-GGCCAGGTGGGG-GCAGCTGCATC-------------------------ACCAGTGAGT--------------------CTCATGTGGTTGGTGCTGAGCCTGCATCTGAGCGAGTGAGCCGAG------GCCT-----GGT-GGAATTG
s panTro5.chr15               9587763 247 +  83230942 CTGGCGCTC---------------TGT-------------CCTCGGAACCTGCAAT-TTAAATAAGCTCCCAGGCACCTCCGATGCAGGTGTGTGGAG--TGGCTGTGGGATCCAGCGATCTGGCTGGAACTGAC-TTTCTGCA-TTTTCCTCTCATGTGTGCACCCGCCCC--TCTTTGAGAAT----GTGGT-GGCCAGGCCGGG-GCAGCTGCACC-------------------------ACCAGTGAGT--------------------CTCATGTGGTTGGCGCTGAGCCTGTGTCTGAGCGAGTGAGCCCAG------GCCT-----GGT-GGAATTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74120365 247 -  99763055 CTGGCGCTC---------------TGT-------------CCTCGGAGCCTGCAAT-TTAAATAAGCTCCCAGGCACCTCCGATGCAGGTGTGTGGAG--TGGCTGTGGGATCCAGCGATCTGGCTGGAACTGAC-TTTCTGCA-TTTTCCTCTCATGTGTGCACCCGCCCC--TCTTTGAGAAT----GTGGT-GGCCAGGCCGGG-GCAGCTGCATC-------------------------ACCAGTGAGT--------------------CTCATGTGGTTGGCGCTGAGCCTGCATCTGAGCGAGTGAGCCGAG------GCCT-----GGT-GGAATTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       164309 246 -    281578 CTGG-GCTC---------------TGT-------------CCTCGGAGCCTGCAGT-TTAAATAAGCTCCCAGGCACCTCCGATGCAGGTGTGTGGAG--TGGCTGTGGGATCCGGCAATCTGGCTGGAACTGAC-TTTCTGCA-TTTTACTCTCACGTGTGCACCCGCCCC--TCTTTGAGAAT----GTGGT-GGCCAGGCCGGG-GCAGCTGCACC-------------------------ACCAGTGAGT--------------------CTCATGTGGTTGGCGCTGAGCCTGCATCTGAGCGAGTGAGCCGAG------GCCT-----GGT-GGAATTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71023857 247 + 121039945 CTGGCGCTC---------------TGT-------------CCTCGGAGCCTGCAAT-TTAAATAGGCTCCCAGGCACCTCCGATGCAGGTACGTGGAG--TGGCTGTGGGATCCGGCGATCTGGCTGGAACTGAC-TTTCTGCA-TTTTCCTCTCACGTGTGCACCCGCCCC--TCTTTGAGAAT----GTGGT-GGCCAGGCCGGG-GCAGCTGCACC-------------------------ACCAGTGAGT--------------------CTCATGTGGTTGGTGCTGAGCCTGCATCTGAGCCAGTGAGCCGAG------GCCT-----GGT-GGAATTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164333899 247 - 169600520 CTGGTACTC---------------TGT-------------CCTCGGAGCCTGCTGT-TTAAATAAGCTCCTGGGCACCTCTTATGCATGTGCGTGGAG--TGGCTGTGGGATCTGACGATCTGGCTGGAACTGAC-TTTCTGCA-TTTTCCTCTCACGTGTGCATGTGCCTC--TCTTTGAGAAT----GTGGT-GGCCAGGCCGGG-GCAGCTGCACC-------------------------ACCAGCGAGT--------------------CTCATGTGGTTGGTGCTGAGCCTGCGTCTGAGGGAGTGAGCTGAG------GCCT-----GGT-GGCGTTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165654864 247 - 171882078 CTGGTACTC---------------TGT-------------CCTCGGAGCCTGCTGT-TTAAATAAGCTCCTGGGCACCTCTTATGCATGTGCGTGGAG--TGGCTGTGGGATCTGACGATCTGGCTGGAACTGAC-TTTCTGCA-TTTTCCTCTCACGTGTGCATGTGCCTC--TCTTTGAGAAT----GTGGT-GGCCAGGCCGGG-GCAGCTGCACC-------------------------ACCAGCGAGT--------------------CTCATGTGGTTGGTGCTGAGCCTGCGTCTGAGGGAGTGAGCTGAG------GCCT-----GGT-GGCGTTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       509237 247 +   2379783 CTGGTACTC---------------TGT-------------CCTCGGAGCCTGCTGT-TTAAATAAGCTCCTGGGCACCTCTTATGCATGTGCGTGGAG--TGGCTGTGGGATCTGACGATCTGGCTGGAACTGAC-TTTCTGCA-TTTTCCTCTCACGTGTGCATGTGCCTC--TCTTTGAGAAT----GTGGT-GGCCAGGCCGGG-GCAGCTGCACC-------------------------ACCAGCGAGT--------------------CTCATGTGGTTGGTGCTGAGCCTGCGTCTGAGGGAGTGAGCTGAG------GCCT-----GGT-GGCGTTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       466408 247 +   4116138 CTGGTACTC---------------TGT-------------CCTTGGAGCCTGCTGT-TTAAATAAGCTCCTGGGCACCTCTTATGCACGTGCGTAGAG--TGGCTGTGGGATCTGACGATCTGACTGGAACTGGC-TTTCTGCA-TTTTCCTCTCACGTGTGCATGTGCCCC--TCTTTGAGAAT----GTGGT-GGCCAGGCCGGG-GCAGCTGCACC-------------------------ACCAGCGAGT--------------------CTCATGTGGTTGGTGCTGAGCCTGCGTGTGAGGGAGTGAGCTGAG------GCCT-----GGT-GGCATTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53898706 247 +  58131712 CTGGTACTC---------------TGT-------------CCTCGGAGCCTGCTGT-TTAAATAAGCTCCTGGGCACCTCTTATGCAGGTGCGTGGAG--TGGCTGTGGGATCTGGCGATCTGGCTGGAACTGAC-TTTCTGCA-TTTTCCTCTCACGTGTGCATGTGCCCC--TCTTTGAGAAT----GTGGT-GGCCAGGCCGGG-GCAGCTGCACC-------------------------ACCAGCGAGT--------------------CTCATGTGGTTGGTGCTGAGCCTGCGTCTGAGGGAGTGAGCTGAG------GCCT-----GGT-GGCATTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       519160 247 -   3636681 CTGGTACTC---------------TGT-------------CCTCGGAGCCTGCTGT-TTAAATAAGCTCCTGGGCACCTCTTATGCACGTGCGTGGAG--TGGCTGTGGGATCTGACGATCTGGCTGGAACTGAC-TTCCTGCA-TTTTCCTCTCACGTGTGCATGTGCCCC--TCTTTGAGAAT----GTGGT-GGCCAGGCCGGG-GCAGCTGCACC-------------------------ACCAGCGAGT--------------------CTCATGTGGTTGGTGCTGAGCCTGCGTCTGAGGGAGTGAGCTGAG------GCCT-----GGT-GGCATTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       498436 247 -   4457520 TTGGTACTC---------------TGT-------------CCTCGGAGCCTGCAGT-TTAAATAAGCTCCTGGGCACCTCCTATGCAGGCGCGTGGAG--TGGCTGTGGAATCCGGCGATCTGGCTGGAACTGAC-TTTCTGCA-TTTTCCTCTCTCGTGTGCACGTGCCCC--TCTTTGAGAAT----GTGGT-GGCCAGGCCGGG-GCAGCTGCGCC-------------------------ACCAGCGAGT--------------------CTCATGTGGTTGTTGCTGAGCCTGTGTCTGAGGGAGTGAGCCGAG------GCCT-----GGT-GGCATTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154529520 244 - 158406734 CTGGCACTC---------------TGT-------------CCTTGGAGCCTGCAAT-TTAAGTAAGCTCCCAGGCACCTCTGATGCAGGTGCGTGGAG--TGGCTGTGGGATCCAGCGGCCTGGCTGCACCCGAC-TTTCTATG-TCTTCCTCTCACTTGTGCACCTGTCCC--TCTTTGAAAAT----GTGGT-GGCCGGGCC-AG-GCAGCGGCACC-------------------------ACTAGTGGAT--------------------CT--TGTGGTTGGCGCTGAGCTTGTGTCTGAGGGAGTGAGCCGAG------GCTT-----GGT-GGAGCTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             361333 227 -   2682657 CCAGCACTC---------------GGT-------------CCTGGGAGCCTGCCAT-TTCAGCAAGCTCCCAGGCAGCTCCGATGTGGGTGCGTGGAG--TGGCTGTGGGGTCCAGCGGCCTGGCTGGACCCGGC-TTTCTGCG-TCGTCCTCTCACTCGGGAAGCCGTCCC--TCTTTGAAAAT----GCGGT-GACCGGGCC-AG-GCAGCGGCACC-------------------------ACCAGGGGCT--------------------CTCATGCATTTGGCGCTGAGCCTGCGTTTGAGGGAGTGAG-------------------------------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       387604 228 -   2086007 CTGGCACTC---------------TGT-------------CCGTGG-----------------TAACTCCCAGGCACCTCCGATGCGGCTGCGTGGAG--TGGCCGTGGGGTCCAGCGGCCTGGCTGTACCCGAC-TTTCTGCG-TCCTCCTCTCACTCGTGCAGCCGTCCC--TCTTTGAAAAT----GGGGT-GGCCGGGCC-AG-GCAGCGGCACC-------------------------ACCAGGGGGT--------------------CT--CGTGGTTCTCACTGAGCCTGCGTCTGAGGGAGTGAGCTGAG------GCTT-----GGT-GGAGTTG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       448952 246 +   3831555 CTGGCACTC---------------TGT-------------CCTTGGAGCCTGCAAT-TTAAGTAAGCTCCCAGGCACCTCCGATGCAGGTGCATGGAG--TGGCTGTGGGATCCAGCGGCCTGGCTGGACCCGAC-TTTCTGCG-TCTTCCTCTCACTTGTGCACCTGTCCC--TCTTTGAAAAT----GTGGT-GGCCGGGCC-AA-GCAGCGGCACC-------------------------ACCAGTGGAT--------------------CTCATGTGGTTGGCGCTGAGCCTGCGTCTGAGGGAGTGGGCTGAG------GCTT-----GGT-GGCGTTG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             471417 224 +   3845361 GCAGTACT-----------------GG-------------CCTCTGACTCTGCAGA-TGA-----------------CTCTGATGCCAGTGCACAAAG--AGACTTTGGGA-CGAGTGACCCAGCCAGAAC-GAC-TGCCGGCA-CTTTCCCTTCATTCCTGCTTTCACCT-----TCTGAGAGT----GTGAT-G--CAGGCAAGGTGCAGCCTCACC-------------------------TCTGCGGGGG--------------------TG--TGTGCTTGCTGCTGA-CCGCAGTTGGAGGAAGCGAGCTGGG------GCCCTGCAGAGT-GGGCCTG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60049673 250 -  91889043 acagtggtc---------------tgtagttttggacttgcccctgaagtttcagt-gtaaataagc-cccaggtgattctgatgcaGGAGTTAAAAGCATGCCTCTCATAACTGGCAATCTAGCTGGATTTGAC-TCTCT------TACTCCCTTTGGGGACAGTCAGAAG--GGTTTGGTAAT----GCAGT-G--CTTGCT----ATGTCTTTACC-------------------------TCTGGTGGAC--------------------CTTGT-TGGTTGGCTCAGAACCTGTGTATGAGATAGTGAGCCAGC------GCCT-----GGT-GGACTAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             433630 317 +    563711 TTGGTACTCTTGTAGATTTGAATGTGT-------------CTTCTGAACCTGCCTTCTTAAGTGAGGTCGCAAATGATTCTGATGCAGGTGCACAGAC--TGGTTGTGG-------TGACCTAACTGGAAGGGATGTTTGTGTGTTTTTCCTACAACTCGCTCTTCTCCCTCCACCTTGGAGACTCAGGGTGGTAGGGCAAGATAGT-GCAGCTCTTTCCCCCCtttttttttttttttttttaaCCAGTACATGCTTTACAACCTCTAACTACCTTCTGGATTGGCTTCTGAGCCTGAGGCTGAGGTACTGAATCAGGCACCAAGCAA-----AGTAAGCATCG
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56146841 1766 + 145441459 I
e proCoq1.NW_012148396v1     13521257 348 +  16154928 I

a score=539054.000000
s hg38.chr15_KI270851v1_alt    200785 57 +    263054 CCCTGCGGT--CTCGGTCCATC-GCGTCCTCCTCCAGTGAGAgcccctgcccaagcacac
s panTro5.chr15               9588010 57 +  83230942 CCCTGTGGT--CTCGGTCCATT-GCCTCCTCCTCCAGTGAGAGCCCTCGCCCGAGCACAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74120612 57 -  99763055 CCCTGTGGT--CTCGGTCCATT-GCCTCCTCCTCCAGTGAGAGCCCTCGCCCGAGCACAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       164555 57 -    281578 CCCTGTGGT--CTTGGTCCATT-GCCTCCTCCTCCAGTGAGAgcccctgcccaagcacac
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71024104 54 + 121039945 CCCTGCGGT--CTCGGTCCATC-G---CCTCCTCCAGTGAGAGCCCCCGCCCGAGCACAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164334146 57 - 169600520 CCCTGCGAT--CTCGGTCCATC-GCCGCCTCCTCCAGTGAGAGGCCCTGCCCAAGCACAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165655111 57 - 171882078 CCCTGCGAT--CTCGGTCCATC-GCCGCCTCCTCCAGTGAGAGGCCCTGCCCAAGCACAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       509484 57 +   2379783 CCCTGCGAT--CTCGGTCCATC-GCCGCCTCCTCCAGTGAGAGGCCCTGCCCAAGCACAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       466655 57 +   4116138 CCCTGCGAT--CTCGGTCCATC-GCCTCCTCCTCCAGTGAGAGCCCCTGCCCAAGCACAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53898953 57 +  58131712 CCCTGTGAT--CTTGGTCCATC-GCCTCCTCCTCCAGTGAGAGCCCCTGCCCAAGCACAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       519407 57 -   3636681 CCCTGCGAT--CTCGGTCCATC-GCCTCCTCCTCCAGTGAGAGCCCCTGCCCAAGCACAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       498683 57 -   4457520 CCCTGCGAT--CTCGGTCAATC-GCCTCCTCCTCCAGTGAGGGCTCCCGCCCAAGCACAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154529764 58 - 158406734 CCCTGTGGT--CTTGGTCCATCTGCCTCCTCCTCCAGTGAGAGCCTCTGCCCAAGCACAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             361560 55 -   2682657 --CTGTGGT--CTTCGTCCTTCTGCCTCCTCCTCCGGTGAGAGCCTCTGCCCAAGCACA-
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       387832 58 -   2086007 CCCTGTGGT--CTTGGTCCATCTGCCTCCTCCTCCCATGAGAGCCTCTGCCCAAGCACAC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       449198 58 +   3831555 CCCTGTGGT--CTTGGTCCATGTGCCTCCTCCTCTAATGAGAACCTCTGCCCAAGCACAC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             471641 52 +   3845361 CCCTGCAGT--C-----CCTCT-GCCTCCTTCCATAGCTACAGTCCTCAGCAAAGCACGG
i otoGar3.GL873689          C 0 C 0
s dasNov3.JH562051             433947 47 +    563711 TCTCGCAGCTGCTCTGTTCTTCAGCTTCCTTCTCCA-------------CCTAGACATAG
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56146841 1766 + 145441459 I
e proCoq1.NW_012148396v1     13521257 348 +  16154928 I
e canFam3.chr3               60049923  0 -  91889043 C

a score=644839.000000
s hg38.chr15_KI270851v1_alt    200842 55 +    263054 --cccacctgccacctgccTTTACCTTTCCTCTGTGGTCCCTGACTCTGAACTCTTC
s panTro5.chr15               9588067 55 +  83230942 --CCCACCTGTCACCTGCCTTTACCTTTCCTCTGAGGTCCCTGACTCTGAACTCTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74120669 55 -  99763055 --CCCACCTGCCACCTGCCTTTACTTTTCCTCTGTGGTCCCTGACTCTGAACTCTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       164612 55 -    281578 --cccacctgccacctgccTTTACCTTTCCTCTGTGGTCCCTGACTCTGAACTCTTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71024158 55 + 121039945 --CCCACCTGCCACCTGCCTTTACCTTTCCTCTGTGGTCCCTGACTCTGAACTCTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164334203 55 - 169600520 --TCCACCTGCCCTCTGCCTTTACCTTTCCTCTGCGGTGCTTGACTCTGAACTCTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165655168 55 - 171882078 --TCCACCTGCCCTCTGCCTTTACCTTTCCTCTGCGGTCCTTGACTCTGAACTCTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       509541 55 +   2379783 --TCCACCTGCCCTCTGCCTTTACCTTTCCTCTGCGGTCCTTGACTCTGAACTCTTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       466712 55 +   4116138 --TCCACCTGCCCTCTGCCTTTACCTTTCCTCTGCGGTCCTTGCCTCTGAACTCTTC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53899010 55 +  58131712 --TCCACCTGCCCTCTGCCTTTACCTTTCCTCTGCGGTCCTTGACTCTGAACTCTTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       519464 55 -   3636681 --TCCGCCTGCCCTTTGCCTTTACCTTTCCTCTGCGGTCCTTGACTCTGAACTCTTC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       498740 55 -   4457520 --TCCACATGCCCCCTGCCTTTACCTTTCCTCTGCGGTCCTTGACTCTGAACTCTTC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154529822 55 - 158406734 --CCCGCCTGCCCCCTGCCTTTACCTTTCCTCTGCAGCCCTTGACTCTGAACTCTTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             361615 55 -   2682657 --GCCACCTGCCCCCTGCCTTTACCTTTCCTCTGCAGCCCTTGACTCTGAACTCTTC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       387890 55 -   2086007 --CCCGCCTGTCCCCTGCCCTTACCTTTCCTCTGCAGCCCTTGACTCTGAACTCTTC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       449256 55 +   3831555 --CCCACCTGCCCCCTGCCTTTACCTTTCCTCTGCAGCCCTTGACTCTGAACTCTTC
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13521605 55 +  16154928 --CCCACCTGCCTCCTGCCTTTACCTTTCCTCTGCAGCCCTTGACTCAGAACATATC
i proCoq1.NW_012148396v1    I 348 C 0
s otoGar3.GL873689             471693 51 +   3845361 --TCCACCTGCCTGCTGCCTCTGCCT---CTCTGTAGCCC-TGACTCAGAATGCATT
i otoGar3.GL873689          C 0 C 0
s dasNov3.JH562051             433994 51 +    563711 ACCCTGACCTTCCTATTCTTTTCTTTCTTCTCTCTGCTTCTTAAATGTG-----TT-
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56146841 1766 + 145441459 I
e canFam3.chr3               60049923  0 -  91889043 C

a score=1093912.000000
s hg38.chr15_KI270851v1_alt    200897 89 +    263054 ATGTAATGTGGAGTTAGTCAGCACTTTATCGCTTCTAGGGAAGCAGAGGTGAGAATTTAGGGGTGGACCAAGAAAGCTAGATCCTATCT
s panTro5.chr15               9588122 89 +  83230942 ATGTAATGTGGAGTTAGTCAGCACTTTATCGCTTCTAGGGAAGCAGAGGTGAGAATTTAGGGGTGGACCAAGAAAGCTAGATCCTATCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74120724 89 -  99763055 ATGTAATGTGGAGTTAGTCAGCACTTTATCGCTTCTAGGGAAGCAGAGGTGAGAATTTAGGGGTGGACCAAGAAAGCTAGATCCTATCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       164667 89 -    281578 ATGTAATGTGGAGTTAGTCAGCACTTTATTGCTTCTAGGGAAGCAGAGGTGAGAATTTAGGGGTGGACCAAGAAAGCTAGATCCTATCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71024213 89 + 121039945 GTGTAATGTGGAGTTAGTCAGCACTTTATCGCTTCTAGGGAAGCAGAGGTGAGAATTTAGGGGTGGACTAAGAAAGCTAGATCCTATCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164334258 89 - 169600520 CTGTAATGTGGAGTTAGTCAGCACTTTATCGCTTCTAGGGAAGCAGAAGTGAGAATTCAGGGGTGGACCAAGAACGCTGGATCCTGTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165655223 89 - 171882078 CTGTAATGTGGAGTTAGTCAGCACTTTATCGCTTCTAGGGAAGCAGAAGTGAGAATTCAGGGGTGGACCAAGAACGCTGGATCCTATCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       509596 89 +   2379783 CTGTAATGTGGAGTTAGTCAGCACTTTATCGCTTCTAGGGAAGCAGAAGTGAGAATTCAGGGGTGGACCAAGAACGCTGGATCCTATCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       466767 89 +   4116138 CTGTAATGTGGAGTTAGTCAGCACTTTATCGCTTCTAGGGAAGCAGAAGTGAGAGTTCAGGGGTGGACCAAGAACGCTAGATCCTATCC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53899065 89 +  58131712 CTGGAATGTGGAGTTAGTCAGCACTTGATCGCTTCTAGGGAAGCAGAAGTGAGAATTCAGGGGTGGACCAAGAACGCTAGATCCTATCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       519519 89 -   3636681 CTGTAATGTGGAGTTAGTCAGCACTTTATCGCTTCTAGGGAAGTAGAAGTGAGAGTTCAGGGGTGGACCAAGAACGCTAGATCCTATCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       498795 89 -   4457520 CTGTAACGTGGAGTTAGTCAGCACTTTATCGCTTTTAGGGAAGCAGAAGTGAGAATTCAGGGGTGGACCAAGAATGCTAGATCCTGTCC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154529877 89 - 158406734 ATGTAATGTTGAGGTAGTCAGCACTTTATCGCTGCTAGGGAAGCAGAGGTGAGAATTCAGGGGCCGGCTAAGAAAGCTCAATCCTATCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             361670 89 -   2682657 GTCTAATGTTGAGTTAGTCAGCACTTTATCGCTGCTAGGGAAGCAGAGGTGAGAATTCAGGGGCGGGCCGAGAAAGCTCGATCCTATCT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       387945 85 -   2086007 ATGTAATGTTGAGTT----AGCACTTCATCGCTGCCAGGGAAGCAGAGGTGAGAATTGAGGGGCGGGCTAAGAAAGCTCAGTCCTACCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       449311 89 +   3831555 ATGTAATGTTGAGTTAGTCAGCACTTGATCGCTGCTAGGGAAGCAGAGGTGAGAATTTAGGGGCGGGCTAGGAAAGCGCGATCCTATCT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13521660 89 +  16154928 ACATAATATGAATTTAGTCAGTACTTTATTGATTCCAGGAAAGCAGAGGTGAGAATTTGGGGGTGGACCCAGAAAGTTAGATCCTATCT
i proCoq1.NW_012148396v1    C 0 I 1074
s otoGar3.GL873689             471744 89 +   3845361 ATGTGACGTGACGTGAGTTAGTACTCTACTGCTTCTGTGAAATCAGAGGTCAGGACTTGGACGTGGACCCCGGAATTCAGACCCTATCC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60049923 80 -  91889043 AAGTAGTGTGGAGTTAGT----ACTGTCTTGCCTTAAAGAAACTAGAGGTGAGAATTT-GGAGTGAACCCAG----TTAAATCCTATCT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             434045 85 +    563711 ACAGAAGGTGGAGCAAGTCAGTACTATA----TTTAAGGAAAGCAGTGGTGAGAATTTGGTGGTGGCCTCTGAAGGTTAAATTGTTTCT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56146841 1766 + 145441459 I

a score=570156.000000
s hg38.chr15_KI270851v1_alt    200986 55 +    263054 GTGGAGATCC-AGGTTGTGGGA-GGAGG-TTTC----GTGACA-TTTCTTAGCTGTTCCTAAA
s panTro5.chr15               9588211 55 +  83230942 GTGGAGATCC-AGGTTGTGGGA-GGAGG-TTTC----GTGACA-TTTCTTAGCTGTTCCTAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74120813 55 -  99763055 GTGGAGATCC-AGGTTGCAGGA-GGAGG-TTTC----GTGACA-TTTCTTAGCTGTTCCTAAA
i panPan2.chr15             C 0 I 2
s gorGor5.CYUI01000141v1       164756 55 -    281578 GTGGAGATCC-AGGTTGCGGGA-GGAGG-TTTC----GTGACA-TTTCTTAGCTGTTCCTAAA
i gorGor5.CYUI01000141v1    C 0 I 2
s nomLeu3.chr6               71024302 55 + 121039945 GTGGAGATCC-AGGTTGTGGGA-GGAGG-TTTC----GTGACA-TTTCTTAGCTGTTCCTGAA
i nomLeu3.chr6              C 0 I 2
s rheMac8.chr7              164334347 55 - 169600520 AAGGAGATCC-AGGTTGTGGGA-GGAGG-TTTC----GTGACA-TTTCTTACCTGTTCCTAAA
i rheMac8.chr7              C 0 I 2
s macFas5.chr7              165655312 55 - 171882078 AAGGAGATCC-AGGTTGTGGGA-GGAGG-TTTC----GTGACA-TTTCTTACCTGTTCCTAAA
i macFas5.chr7              C 0 I 2
s macNem1.NW_012011934v1       509685 55 +   2379783 AAGGAGATCC-AGGTTGTGGGA-GGAGG-TTTC----GTGACA-TTTCTTACCTGTTCCTAAA
i macNem1.NW_012011934v1    C 0 I 2
s cerAty1.NW_012001462v1       466856 55 +   4116138 AGGGAGATCC-AGGTTGTGGGA-GGAGG-TTTC----GTGACA-TTTCTTACCTGTTCCTAAA
i cerAty1.NW_012001462v1    C 0 I 2
s chlSab2.chr26              53899154 55 +  58131712 AAGGAGATCC-AGGTTGTGGGA-GGAGG-TTTC----GTGACA-TTTCTTACCTGTTCCTAAA
i chlSab2.chr26             C 0 I 2
s manLeu1.NW_012102332v1       519608 55 -   3636681 AAGGAGATCC-AGGTTGTGGGA-GGAGG-TTTC----GTGACA-TTTCTTACCTGTTCCTAAA
i manLeu1.NW_012102332v1    C 0 I 2
s colAng1.NW_012115278v1       498884 55 -   4457520 AAGGAGATCC-AGGTTGTGGGA-GGAGG-TTTC----GTGACA-TTTCTTACCTGTTCCTAAA
i colAng1.NW_012115278v1    C 0 I 318
s calJac3.chr6              154529966 57 - 158406734 GAGGAGGTCCAAGGTTGTGGGAGGGAGG-CTTC----ATGATA-CTTCTTAGCTGTTCCTGAA
i calJac3.chr6              C 0 I 2
s saiBol1.JH378292             361759 57 -   2682657 GAGGAGGTCCAAGGTTGTGGGAGGGAGG-CTTC----TTGACA-TTTCTTAGCTGTTCCTGAA
i saiBol1.JH378292          C 0 I 2
s cebCap1.NW_016107707v1       388030 57 -   2086007 GAGGAGGTCCAAGGTTGTGGGAGGGAGG-CTTC----ATGACA-TTTCTTGGCTGTTCTTGAA
i cebCap1.NW_016107707v1    C 0 I 2
s aotNan1.NW_018503298v1       449400 57 +   3831555 GAGGAGGTCCAAGGTTGTGGGAGGGAGG-CTTC----ATGACA-TTTCTTAGCTGTTCCTGAA
i aotNan1.NW_018503298v1    C 0 I 2
s otoGar3.GL873689             471833 49 +   3845361 AAGGGAAGCA--------GGGG-AAAGG-TTTC----ATGACATTTTTTTAACTGTGTCACAA
i otoGar3.GL873689          C 0 I 14
s canFam3.chr3               60050003 56 -  91889043 AAGGAAATCCAAGGTTGTGGGA-GGAGGACATC----ATGACA-TTT-TTAGATGTGTCCAAC
i canFam3.chr3              C 0 I 9
s dasNov3.JH562051             434130 51 +    563711 TAGGAAATCC-A------GGGA-GGAGG-GCTCCACTGTGCC--TTTTTTAG-TGTATCCAAA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56146841 1766 + 145441459 I
e proCoq1.NW_012148396v1     13521749 1074 +  16154928 I

a score=318605.000000
s hg38.chr15_KI270851v1_alt    201041 27 +    263054 ----------ACACG----TGAAGCTTCA-CATGGTTGGGCT
s panTro5.chr15               9588266 27 +  83230942 ----------ACACG----TGAAGCTTCA-GATGGTTGCGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74120870 27 -  99763055 ----------ACATG----TGAAGCTTCA-CATGGCTGGGTT
i panPan2.chr15             I 2 C 0
s gorGor5.CYUI01000141v1       164813 27 -    281578 ----------ACATG----TGAAGCTTCA-CATGGCTGGGCT
i gorGor5.CYUI01000141v1    I 2 C 0
s nomLeu3.chr6               71024359 27 + 121039945 ----------ACATG----TGAAGCTTCA-CATGGCTGGGCT
i nomLeu3.chr6              I 2 C 0
s rheMac8.chr7              164334404 27 - 169600520 ----------ACATG----TGAAGCTTCA-CATGGCTGGGCT
i rheMac8.chr7              I 2 C 0
s macFas5.chr7              165655369 27 - 171882078 ----------ACATG----TGAAGCTTCA-CATGGCTGGGCT
i macFas5.chr7              I 2 C 0
s macNem1.NW_012011934v1       509742 27 +   2379783 ----------ACATG----TGAAGCTTCA-CATGGCTGGGCT
i macNem1.NW_012011934v1    I 2 C 0
s cerAty1.NW_012001462v1       466913 27 +   4116138 ----------ACATG----TGAAGCTTCA-CATGGCTGGGCT
i cerAty1.NW_012001462v1    I 2 C 0
s chlSab2.chr26              53899211 27 +  58131712 ----------ACATG----TGAAGCTTCA-CATGGCTGGGCT
i chlSab2.chr26             I 2 C 0
s manLeu1.NW_012102332v1       519665 27 -   3636681 ----------ACATG----TGAAGCTTCA-CATGGCTGGGCT
i manLeu1.NW_012102332v1    I 2 C 0
s colAng1.NW_012115278v1       499257 27 -   4457520 ----------ACATG----TGAAGCTTCA-CATGGCTGGGCT
i colAng1.NW_012115278v1    I 318 C 0
s calJac3.chr6              154530025 27 - 158406734 ----------ACGTG----TGATGCCTCA-CATGGCTGGGCT
i calJac3.chr6              I 2 C 0
s saiBol1.JH378292             361818 27 -   2682657 ----------ACGTG----TGACGCCTCA-CATGGCTGGGCT
i saiBol1.JH378292          I 2 C 0
s cebCap1.NW_016107707v1       388089 27 -   2086007 ----------ACGTG----TGATGCCTCA-CATGGCTGGGCT
i cebCap1.NW_016107707v1    I 2 C 0
s aotNan1.NW_018503298v1       449459 27 +   3831555 ----------ACGAG----TGATGCCTCA-CATGGCTGGGCT
i aotNan1.NW_018503298v1    I 2 C 0
s otoGar3.GL873689             471896 31 +   3845361 ----------ACATGGGAAGGAAGCTGCA-AATGGCTGATCT
i otoGar3.GL873689          I 14 C 0
s canFam3.chr3               60050068 27 -  91889043 ----------ATGAA----TGAAGCTTCC-CATGGCTGGTCT
i canFam3.chr3              I 9 C 0
s dasNov3.JH562051             434181 42 +    563711 AAGCATTGGGACATGTGAATGAAGCTTCAGTATAGCCAGGCT
i dasNov3.JH562051          C 0 I 878
e mm10.chr7                  56146841 1766 + 145441459 I
e proCoq1.NW_012148396v1     13521749 1074 +  16154928 I

a score=328289.000000
s hg38.chr15_KI270851v1_alt    201068 29 +    263054 TGGTAAGACCATCCAAGAGGCTGGGGCTG
s panTro5.chr15               9588293 29 +  83230942 TGGTAAGACCATCCAAGAGGCTGGGGCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74120897 29 -  99763055 TGGTAATACCATCCAAGAGGCTGGGGCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       164840 29 -    281578 TGGTAATACCGTCCAAGAGGCTGGGGCTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71024386 29 + 121039945 TGGTAAGACCATCCAAGAGGCTGGGGCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164334431 29 - 169600520 TGGTAAGACCAACCAAGAGGCTGGGGCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165655396 29 - 171882078 TGGTAAGACCAACCAAGAGGCTGGGGCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       509769 29 +   2379783 TGGTAAGACCAACCAAGAGGCTGGGGCTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       466940 29 +   4116138 TGGTAAGACCGACCAAGAGGCTGGGGCTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53899238 29 +  58131712 TGGTAAGACCAACCAAGAGGCTGGGGCTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       519692 29 -   3636681 TGGTAAGACCAACCAAGAGGCTGGGGCTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       499284 29 -   4457520 TGGTAAGACCAATCAAGAGGCTGGGGCTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154530052 29 - 158406734 TGGTAAGACCATCCGAGAGGCTGGGGCTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             361845 29 -   2682657 TGGTGAGACTATCCGAGAGCCTGGGGCTG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       388116 29 -   2086007 TGGTAAGACCATCCGAGAGGCTGGGGCTG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       449486 29 +   3831555 TGGTAAGACCATCCGGGAGGCTGGGGCTG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             471927 29 +   3845361 TGGTGAGACCATCCAACAGGCCTGCACTG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60050095 16 -  91889043 -------------CAGGAAACCAGGGCTG
i canFam3.chr3              C 0 I 882
e mm10.chr7                  56146841 1766 + 145441459 I
e proCoq1.NW_012148396v1     13521749 1074 +  16154928 I
e dasNov3.JH562051             434223 878 +    563711 I

a score=23776.000000
s hg38.chr15_KI270851v1_alt    201097 2 +    263054 CC
s panTro5.chr15               9588322 2 +  83230942 AC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74120926 2 -  99763055 CC
i panPan2.chr15             C 0 I 1073
s gorGor5.CYUI01000141v1       164869 2 -    281578 CC
i gorGor5.CYUI01000141v1    C 0 I 1067
s nomLeu3.chr6               71024415 2 + 121039945 CC
i nomLeu3.chr6              C 0 I 1065
s rheMac8.chr7              164334460 2 - 169600520 CC
i rheMac8.chr7              C 0 I 1059
s macFas5.chr7              165655425 2 - 171882078 CC
i macFas5.chr7              C 0 I 1060
s macNem1.NW_012011934v1       509798 2 +   2379783 CC
i macNem1.NW_012011934v1    C 0 I 1060
s cerAty1.NW_012001462v1       466969 2 +   4116138 CC
i cerAty1.NW_012001462v1    C 0 I 1060
s chlSab2.chr26              53899267 2 +  58131712 CC
i chlSab2.chr26             C 0 I 1060
s manLeu1.NW_012102332v1       519721 2 -   3636681 CC
i manLeu1.NW_012102332v1    C 0 I 1060
s colAng1.NW_012115278v1       499313 2 -   4457520 CC
i colAng1.NW_012115278v1    C 0 I 1066
s calJac3.chr6              154530081 2 - 158406734 CC
i calJac3.chr6              C 0 I 1007
s saiBol1.JH378292             361874 2 -   2682657 CC
i saiBol1.JH378292          C 0 I 1028
s cebCap1.NW_016107707v1       388145 2 -   2086007 CC
i cebCap1.NW_016107707v1    C 0 I 1058
s aotNan1.NW_018503298v1       449515 2 +   3831555 CC
i aotNan1.NW_018503298v1    C 0 I 1062
s otoGar3.GL873689             471956 2 +   3845361 CC
i otoGar3.GL873689          C 0 I 813
e mm10.chr7                  56146841 1766 + 145441459 I
e proCoq1.NW_012148396v1     13521749 1074 +  16154928 I
e dasNov3.JH562051             434223 878 +    563711 I
e canFam3.chr3               60050111 882 -  91889043 I

a score=22800.000000
s hg38.chr15_KI270851v1_alt    201099 2 +    263054 AA
s panTro5.chr15               9588324 2 +  83230942 AA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74122001 2 -  99763055 AA
i panPan2.chr15             I 1073 C 0
s gorGor5.CYUI01000141v1       165938 2 -    281578 AA
i gorGor5.CYUI01000141v1    I 1067 C 0
s nomLeu3.chr6               71025482 2 + 121039945 AA
i nomLeu3.chr6              I 1065 C 0
s rheMac8.chr7              164335521 2 - 169600520 AA
i rheMac8.chr7              I 1059 C 0
s macFas5.chr7              165656487 2 - 171882078 AA
i macFas5.chr7              I 1060 C 0
s macNem1.NW_012011934v1       510860 2 +   2379783 AA
i macNem1.NW_012011934v1    I 1060 C 0
s cerAty1.NW_012001462v1       468031 2 +   4116138 AA
i cerAty1.NW_012001462v1    I 1060 C 0
s chlSab2.chr26              53900329 2 +  58131712 AA
i chlSab2.chr26             I 1060 C 0
s manLeu1.NW_012102332v1       520783 2 -   3636681 AA
i manLeu1.NW_012102332v1    I 1060 C 0
s colAng1.NW_012115278v1       500381 2 -   4457520 AA
i colAng1.NW_012115278v1    I 1066 C 0
s calJac3.chr6              154531090 2 - 158406734 AA
i calJac3.chr6              I 1007 C 0
s saiBol1.JH378292             362904 2 -   2682657 AA
i saiBol1.JH378292          I 1028 C 0
s cebCap1.NW_016107707v1       389205 2 -   2086007 AA
i cebCap1.NW_016107707v1    I 1058 C 0
s otoGar3.GL873689             472771 2 +   3845361 AA
i otoGar3.GL873689          I 813 C 0
s dasNov3.JH562051             435101 2 +    563711 AG
i dasNov3.JH562051          I 878 C 0
e mm10.chr7                  56146841 1766 + 145441459 I
e proCoq1.NW_012148396v1     13521749 1074 +  16154928 I
e canFam3.chr3               60050111 882 -  91889043 I
e aotNan1.NW_018503298v1       449517 1062 +   3831555 I

a score=13923.000000
s hg38.chr15_KI270851v1_alt    201101 1 +    263054 T
s panTro5.chr15               9588326 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74122003 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       165940 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71025484 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164335523 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165656489 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       510862 1 +   2379783 T
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       468033 1 +   4116138 T
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53900331 1 +  58131712 T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       520785 1 -   3636681 T
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       500383 1 -   4457520 T
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154531092 1 - 158406734 T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             362906 1 -   2682657 T
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       389207 1 -   2086007 T
i cebCap1.NW_016107707v1    C 0 C 0
s otoGar3.GL873689             472773 1 +   3845361 T
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56148607 1 + 145441459 T
i mm10.chr7                 I 1766 C 0
s dasNov3.JH562051             435103 1 +    563711 T
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13521749 1074 +  16154928 I
e canFam3.chr3               60050111 882 -  91889043 I
e aotNan1.NW_018503298v1       449517 1062 +   3831555 I

a score=50276.000000
s hg38.chr15_KI270851v1_alt    201102 4 +    263054 ATAA
s panTro5.chr15               9588327 4 +  83230942 ATAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74122004 4 -  99763055 ATAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       165941 4 -    281578 ATAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71025485 4 + 121039945 ATAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164335524 4 - 169600520 ATAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165656490 4 - 171882078 ATAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       510863 4 +   2379783 ATAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       468034 4 +   4116138 ATAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53900332 4 +  58131712 ATAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       520786 4 -   3636681 ATAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       500384 4 -   4457520 ATAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154531093 4 - 158406734 ATAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             362907 4 -   2682657 ATAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       389208 4 -   2086007 ATAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       450579 4 +   3831555 ATAA
i aotNan1.NW_018503298v1    I 1062 C 0
s otoGar3.GL873689             472774 4 +   3845361 GTAG
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56148608 4 + 145441459 GTCA
i mm10.chr7                 C 0 C 0
s dasNov3.JH562051             435104 4 +    563711 ATAG
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13521749 1074 +  16154928 I
e canFam3.chr3               60050111 882 -  91889043 I

a score=88450.000000
s hg38.chr15_KI270851v1_alt    201106 7 +    263054 TTTGTAA
s panTro5.chr15               9588331 7 +  83230942 TTTGTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74122008 7 -  99763055 TTTGTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       165945 7 -    281578 TTTGTAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71025489 7 + 121039945 TTTGTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164335528 7 - 169600520 TTTGTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165656494 7 - 171882078 TTTGTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       510867 7 +   2379783 TTTGTTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       468038 7 +   4116138 TTTGTTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53900336 7 +  58131712 TTTGTTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       520790 7 -   3636681 TTTGTTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       500388 7 -   4457520 TTTGTTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154531097 7 - 158406734 TTTGTTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             362911 7 -   2682657 TGTGTTA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       389212 7 -   2086007 TTTGTTA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       450583 7 +   3831555 TTTGTTA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             472778 7 +   3845361 TTTCTTA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56148612 7 + 145441459 TTTCTTA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60050993 6 -  91889043 -TTCTTA
i canFam3.chr3              I 882 I 1
s dasNov3.JH562051             435108 7 +    563711 TTTCTTA
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13521749 1074 +  16154928 I

a score=2614973.000000
s hg38.chr15_KI270851v1_alt    201113 159 +    263054 TTTTGA-T---TATTTTTTTTAGAAGCCGAACAAACTGAAAGGAACATTCACCCCACTGCAATGATGTTTACCAGCACTATTAACTTACTGCAGACTCTTTGTCTGTCTGCTGGAGTTCATGCTGAGATCATGCAGAGTGAAGCCACCAAGACTTTATGCGGA
s panTro5.chr15               9588338 159 +  83230942 TTTTGA-T---TATTTTTTTTAGAAGCCAAACAAACTGAAAGGAACATTCAGCCCACTACAATGTTGTTTACCAGCACTATTAACTTACTGCAGACTCTTTGTCTGTCTGCTGGAGTTCATGCTGAGATCATGCAGAGCGAAGCCACCAAGACTTTATGCGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74122015 159 -  99763055 TTTTGA-T---TATTTTTTTTAGAAGCCGAACAAACTGAAAGGAACATTCACCCCACTGCAATGATGTTTACCAGCACTATTAACTTACTGCAGACTCTTTGTCTGTCTGCTGGAGTTCATGCTGAGATCATGCAGAGCGAAGCCACCAAGACTTTATGCGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       165952 159 -    281578 TTTTGA-T---TATTTTTTTTAGAAGCCGAACAAACTGAAAGGAACATTCACCCCACTGCAATGATGTTTACCAGCACTATTAACTTACTGCAGACTCTTTGTCTGTCTGCTGGAGTTCATGCTGAGATCATGCAGAGCGAAGCCACCAAGACTTTATGCGGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71025496 159 + 121039945 TTTTGA-T---TTTATTTTTTAGAAGCCGAGCAAATTGAAAGGAACATTCACCCCACTGCAATGATGTTTACCAGCACTATTAACTTACTGCAGACTCTTTGTCTGTCTGCCGGAGTTCACGCTGAGATCATGCAGAGCGAAGCCACCAAGACTTTATGTGGA
i nomLeu3.chr6              C 0 I 123
s rheMac8.chr7              164335535 158 - 169600520 TTTTGA-T---T-TTTTTTTTAGAAGCCGAACAAACTGAAAGGAACATTCACCCCACTGCAATGATGTTTACCAGCACTATTAACTTACTGCAGACTCTTTGTCTGTCTGCCGGAGTTCATGCCGAGATCATGCAGAGCGAAGCCACCAAGACTTTGTGCGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165656501 158 - 171882078 TTTTGA-T---T-TTTTTTTTAGAAGCCGAACAAACTGAAAGGAACATTCACCCCACTGCAATGATGTTTACCAGCACTATTAACTTACTGCAGACTCTTTGTCTGTCTGCCGGAGTTCATGCCGAGATCATGCAGAGCGAAGCCACCAAGACTTTGTGCGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       510874 158 +   2379783 TTTTGA-T---T-TTTTTTTTAGAAGCCGAACAAACTGAAAGGAACATTCACCCCACTGCAATGATGTTTACCAGCACTATTAACTTACTGCAGACTCTTTGTCTGTCTGCCGGAGTTCATGCCGAGATCATGCAGAGCGAAGCCACCAAGACTTTGTGCGGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       468045 158 +   4116138 TTTTGA-T---T-TTTTTTTTAGAAGCCGAACAAACTGAAAGGAACATTCACCCCACTGCAATGATGTTTACCAGCACTATTAACTTACTGCAGACTCTTTGTCTGTCTGCCGGAGTTCATGCCGAGATCATGCAGAGCGAAGCCACCAAGACTTTGTGCGGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53900343 158 +  58131712 TTTTGA-T---T-TTTTTTTTAGAAGCCGAACAAACTGAAAGGAACATTCACCCCACTGCAATGATGTTTACCAGCACTATTAACTTACTGCAGACTCTTTGTCTGTCTGCCGGAGTTCATGCCGAGATCATGCAGAGCGAAGCCACCAAGACTTTGTGCGGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       520797 158 -   3636681 TTTTGA-T---T-TTTTTTTTAGAAGCCGAACAAACTGAAAGGAACATTCACCCCACTGCGATGATGTTTACCAGCACTATTAACTTACTGCAGACTCTTTGTCTGTCTGCCGGAGTTCATGCCGAGATCATGCAGAGCGAAGCCACCAAGACTTTGTGCGGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       500395 159 -   4457520 TTTTGATT---T-TTTTTTTTAGAAGCGGAACAAACTGAAAGGAACATTCATCCCACTGCAATGATGTTTACCAGCACTATTAACTTACTGCAGACTCTTTGTCTGTCTGCCGGAGTTCATGCTGAGATCATGCAAAGCGAAGCCACCAAGACTTTGTGCGGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154531104 159 - 158406734 TTTTGG-T---TATTTTCTTTAGAAGCTGAACAAATGGAAAGGAACCTTCACCCCACTGCAGTGATGTTCACCAGCACCATTAACTTACTGCAGACTCTTTGTCTGTCTGCGGGAGTTCACGCTGAGCTCATGCAGAGCGAAGCCACCAAGACGTTATGTGGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             362918 159 -   2682657 TTTTGA-T---TGTTTTCTTTAGAAGCTGAACAAACAGAAAGGAACATTCACCCCACGGCAGTGATGTTTACCAGCACCATTAACTTGCTGCAGACTCTCTGTCTCTCTGCCGGAGTTCACGCTGAGCTCATGCAGAGCGAAGCCACCAAGACTTTATGTGGC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       389219 159 -   2086007 TTTTGA-T---TATTTTCTTTAGAAGCCGAACAAACGGAAAGGAACATTCACCCCACGGCAGTGATGTTTACCAGCACCATTAACTTACTGCAGACTCTCTGTCTCTCTGCCGGAGTTCATGCTGAGCTCATGCAGAGCGAAGCCACCAAGACTTTATGTGGC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       450590 159 +   3831555 TTTTGA-T---TATTTTCTTTAGAAGCCGAACAAATGGAAAGGAACATTCACCCCACTGCAGTGATGTTTACCAGCACTATTAACTTACTGCAGACTCTTTGTCTCTCTGCCGGAGTTCATGCTGAGCTCATGCAGAGCGAAGCCACCAAGACTTTATGCGGC
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13522823 159 +  16154928 TTTTGA-T---TATTTTTTTCAGAATCTGAACAAATTGAAAGGAACATTCACCCCACAGCAATGATGCTTACCAGCACGATTAACTTACTGCAGACTCTCTGTCTCTCTGCTGGAGTGCACGCTGAAGTCATGCAGAGTGAAGCCACCAAGACTCTGTGCGGC
i proCoq1.NW_012148396v1    I 1074 C 0
s otoGar3.GL873689             472785 159 +   3845361 TTTTGA-T---TATTTTTTTCAGAAGCTGAACAAATTGAAAGCAACATTCACCCCACTGCAGTGATGCTCACCAGCACTGTTAACTTGCTGCAGACCCTCTGCCTCTCTGCTGGGGTGCACGCTGAGGTCATGCAGAGCGAAGCCACCAAGACTCTGTGTGGC
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56148619 159 + 145441459 TTGCCA-T---CCTCCTTTTCAGAAGCAGAGCAAGGTGAGAGGAATATTCACCCCACAGCGATGATGCTGACCAGCGTTATTAACTTACTGCAAACCCTGTGTCTCTCTGTTGGAGTCCATGCTGACATCATGCAGAGCGAGGCCACCAAGACTTTGTGTGGA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60051000 159 -  91889043 TTTTGA-T---ACTTTTTTCCAGAAGCTGAACAAATTGAAAGGAACATTCATCCTACTGCAATGATGCTTACCAGTACTGTTAATTTATTGCAAACTCTTTGTCTCTCTGCTGGAGTCCATGCTGAAGTCATGCAGAGTGAGGCCACCAAGACCCTGTGTGGG
i canFam3.chr3              I 1 C 0
s dasNov3.JH562051             435115 162 +    563711 TTTTGA-TGTATGTTTTTTTTAGAAGCTGAACAGTTTGAAAGGAACATCCACCCCACTTCAATGATGCTCACAAGTACTATTAATTTACTACAAACTCTCTGTCTCTCCGCTGGAGTACATGCTGAAGTCATGCAGAGCGAAGCCACCAAGACTCTGTGTGGA
i dasNov3.JH562051          C 0 C 0

a score=145462.000000
s hg38.chr15_KI270851v1_alt    201272 9 +    263054 CTGCTGCGA
s panTro5.chr15               9588497 9 +  83230942 CTGCTGTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74122174 9 -  99763055 CTGCTGCGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       166111 9 -    281578 CTGCTGCGA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164335693 9 - 169600520 CTGCTGCGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165656659 9 - 171882078 CTGCTGCGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       511032 9 +   2379783 CTGCTGCGA
i macNem1.NW_012011934v1    C 0 I 428
s cerAty1.NW_012001462v1       468203 9 +   4116138 CTGCTGCGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53900501 9 +  58131712 CTGCTGCGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       520955 9 -   3636681 CTGCTGCGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       500554 9 -   4457520 CTGCTGCGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154531263 9 - 158406734 CTGCTGCGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             363077 9 -   2682657 CTGCTGCGA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       389378 9 -   2086007 CTGCTGCGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       450749 9 +   3831555 CTGCTGCGA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13522982 9 +  16154928 CTTCTGCGA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             472944 9 +   3845361 CTGCTGCGC
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56148778 9 + 145441459 CTACTTCGA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60051159 9 -  91889043 CTTCTGCGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             435277 9 +    563711 CTGCTGCGA
i dasNov3.JH562051          C 0 C 0
e nomLeu3.chr6               71025655 123 + 121039945 I

a score=911680.000000
s hg38.chr15_KI270851v1_alt    201281 79 +    263054 ATGTTAGTGGAAAGCGGAACGACGGACAAGACATGTATGGAATGAGAGATCGAGGG-C-------------CCAGGGAGTCAGC-GC----------TGGGGGC
s panTro5.chr15               9588506 79 +  83230942 ATGTTAGTGGAAAGTGGAACGACGGACAAGACATGTATGGAATGAGAGATCGAGGG-C-------------CCAGGGAGTCAGC-GC----------TGGGGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74122183 79 -  99763055 ATGTTAGTGGAAAGCGGAACGACGGACAAGACATGTATGGAATGAGAGATCGAGGG-C-------------CCAGGGAGTCAGC-GC----------TGGGGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       166120 79 -    281578 ATGTTAGTGGAAAGCGGAACGACGGACAAGACATGTATGGAATGAGAGATCGAGGG-C-------------CCAGGGAGTCAGC-GC----------TGGGGGC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164335702 79 - 169600520 ATGTTAGTGGAAAGCGGAACGACGGACAAGACATGTATGGAATGAGAGATTGAGGG-C-------------CCAGGGAGTCAGC-GC----------TGGGGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165656668 79 - 171882078 ATGTTAGTGGAAAGCGGAACGACGGACAAGACATGTATGGAATGAGAGATTGAGGG-C-------------CCAGGGAGTCAGC-GC----------TGGGGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       511469 79 +   2379783 ATGTTAGTGGAAAGCGGAACGACGGACAAGACATGTATGGAATGCGAGATTGAGGG-C-------------CCAGGGAGTCAGC-GC----------TGGGGGC
i macNem1.NW_012011934v1    I 428 C 0
s cerAty1.NW_012001462v1       468212 79 +   4116138 ATGTTAGTGGAAAGCGGAACGACGGACAAGACATGTATGGAATGAGAGATTGAGGG-C-------------CCAGGGAGTCAGC-GC----------TGGGGGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53900510 79 +  58131712 ATGTTAGTGGAAAGCGGAACGACGGACAAGACATGTATGGAATGAGAGATTGAGGG-C-------------CCAGGGAGTCAGC-GC----------TGGGGGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       520964 79 -   3636681 ATGTTAGTGGAAAGCGGAACGACGGACAAGACATGTATGGAATGAGAGACTGAGGG-C-------------CCAGGGAGTCAGC-GC----------TGGGGGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       500563 79 -   4457520 ATGTTAGTGGAAAGCGGAACGACGGACAAGACATGTATGGAATGAGAGATTGAGGG-C-------------CCAGGGAGTCAGC-GC----------TGGGGGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154531272 66 - 158406734 ATGTTAGTGGAAAGCGGAACCACGGACAAGACATGTATGGAATGAGAGACTGAGGG-C-------------CCAGGGAGT------------------------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             363086 66 -   2682657 ATGTTAGTGGAAAGCGGAACCACGGACAAGACATGTATGGAATGAGAGACTGAGGG-C-------------CCAGGGAGT------------------------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       389387 66 -   2086007 ATGTTAGTGGAAAGCGGAACCACGGACAAGACATGTATGGAATGAGAGACTGAGGG-C-------------CCAgggagt------------------------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       450758 66 +   3831555 ATGTTAGTGGAAAGCGGAACCACGGACAAGACATGTATGGAATGAGAGACTGAGGG-C-------------CCAgggagt------------------------
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13522991 78 +  16154928 ATGTTAGTGGAAAGCGGGACGACGGACAAGACACGTATGGAATGAATGGTTGTGGG-C-------------CC-GGGAGTCAGC-GC----------TGGGGGC
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             472953 76 +   3845361 ATGTTAGTGGAGAGTGGGACGACGGACAAGACGGGTACGGAACGAGTGGCTCTGGG-C-------------CC--GGAGTCAGT-GC-----------AGGGGC
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56148787 90 + 145441459 ATGTTAGTAGAAAGTGGAACAACAGATAAGCCAGGTATGAAATGAATAATTATGGGAC-------------ACAGAGCCTCAGC-ATGGATATATTGTGTAAAT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60051168 92 -  91889043 ATGTTAGTGGAAAGTGGAACGACGGACAAAACATGTATGCAATGAATAGTTGTGGG-CTTGCCTACAGAGTCCTGGGACTATGA-AT----------Ttgtgtg
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             435286 79 +    563711 GTGTTAGTGGAGAGCGGAACCACAGACAAAGCCTGTAGGTGATGGAACAGGGCGGG-C-------------CT-GAGAGTCAATAGC----------CGGGGGC
i dasNov3.JH562051          C 0 I 1045
e nomLeu3.chr6               71025655 123 + 121039945 I

a score=11684.000000
s hg38.chr15_KI270851v1_alt    201360  4 +    263054 CGCA----------------
s panTro5.chr15               9588585  4 +  83230942 CGCA----------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74122262  4 -  99763055 CGCA----------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       166199  4 -    281578 CGCA----------------
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164335781  4 - 169600520 CGCA----------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165656747  4 - 171882078 CGCA----------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       511548  4 +   2379783 CGCA----------------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       468291  4 +   4116138 CGCA----------------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53900589  4 +  58131712 CGCA----------------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       521043  4 -   3636681 CGCA----------------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       500642  4 -   4457520 CGCA----------------
i colAng1.NW_012115278v1    C 0 C 0
s proCoq1.NW_012148396v1     13523069  4 +  16154928 TGCA----------------
i proCoq1.NW_012148396v1    C 0 I 1335
s otoGar3.GL873689             473029  4 +   3845361 TGTG----------------
i otoGar3.GL873689          C 0 I 11
s mm10.chr7                  56148877  4 + 145441459 CTCT----------------
i mm10.chr7                 C 0 I 2
s canFam3.chr3               60051260 20 -  91889043 tgtgtgtgtgtgtgtgtgtg
i canFam3.chr3              C 0 C 0
e dasNov3.JH562051             435365 1045 +    563711 I
e aotNan1.NW_018503298v1       450824  0 +   3831555 C
e cebCap1.NW_016107707v1       389453  0 -   2086007 C
e nomLeu3.chr6               71025655 123 + 121039945 I
e saiBol1.JH378292             363152  0 -   2682657 C
e calJac3.chr6              154531338  0 - 158406734 C

a score=223412.000000
s hg38.chr15_KI270851v1_alt    201364  36 +    263054 CGCTTGT---------------------------------------------------------------CGTgt-------ctgggtgt--gcatgt-----------gggtgggtgt----------
s panTro5.chr15               9588589  36 +  83230942 CGCTTGT---------------------------------------------------------------CATgt-------ctgggtgt--gcatgt-----------gggtgggtgt----------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74122266  36 -  99763055 CGCTTGT---------------------------------------------------------------CATgt-------ctgggtgt--gcatgt-----------gggtgggtgt----------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       166203  33 -    281578 CGCTtg------------------------------------------------------------------tgt-------ctgggtgt--gcatgt-----------gggtgggtgt----------
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164335785  36 - 169600520 CGCTTGT---------------------------------------------------------------CGTGT-------CTGGGTGT--CAATGT-----------GGGTGGGTGT----------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165656751  36 - 171882078 CGCTTGT---------------------------------------------------------------CGTGT-------CTGGGTGT--CAATGT-----------GGGTGGGTGT----------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       511552  36 +   2379783 CGCTTGT---------------------------------------------------------------CGTgt-------ctgggtgt--cagtgt-----------gggtgggtgt----------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       468295  36 +   4116138 CGCTTGT---------------------------------------------------------------CGTGT-------CTGGGTGT--CAATGT-----------GGGTGGGTGT----------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53900593  36 +  58131712 CGCTtgt---------------------------------------------------------------cgtgt-------ctgggtgt--caatgt-----------gggtgggtgt----------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       521047  36 -   3636681 CGCTTGT---------------------------------------------------------------CGTGT-------CTGGGTGT--CAGTGT-----------GGGTGGGTGT----------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       500646  36 -   4457520 CGCTTGT---------------------------------------------------------------CGTGT-------CTGGGTGT--CAATGT-----------GGGTGGGTGT----------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154531338  29 - 158406734 ----------------------------------------------------------------------GGTGT-------CTGGTTGT--GCATGT-----------GGGTGCGTGT----------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             363152  29 -   2682657 ----------------------------------------------------------------------GGTGT-------CTGCTTGT--GCATGT-----------GGGTGCGTGT----------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       389453  29 -   2086007 ----------------------------------------------------------------------ggtgt-------ctggttgt--gcatgt-----------gggtgcgtgt----------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       450824  29 +   3831555 ----------------------------------------------------------------------ggtgt-------ctggttgt--gcatgt-----------gggtgtgtgt----------
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             473044 110 +   3845361 CTTTtgtgggtgtgtgtgtctgagagagtgtgtgagtatgtgtgtctgtgtgtgtctgagtgagagtgagtgtgt-------ctgtgagt--gaatgtgtgtgaggtgggggcgagtgt----------
i otoGar3.GL873689          I 11 I 6
s mm10.chr7                  56148883  44 + 145441459 -TGTTTC---------------------------------------------------------------TGTGTTGGTGGGCTGGATGTTAGAATGT-----------GAATCAGCAC----------
i mm10.chr7                 I 2 C 0
s canFam3.chr3               60051280  47 -  91889043 tgtttgtg--------------------------------------------------------------tgtgt-------ctgtgtat--gtaagt-----------gggtgtgtCCATGGGGGTGA
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13523073 1335 +  16154928 I
e dasNov3.JH562051             435365 1045 +    563711 I
e nomLeu3.chr6               71025655 123 + 121039945 I

a score=4014665.000000
s hg38.chr15_KI270851v1_alt    201400 393 +    263054 ggatgtgTG------tggattcct---------ttcctgtggctgctgtaacaaagta--tacaaacttgg-----------ggacttacacagtagaaa----------------------------ttctcacggttctggtggctggaaggctgagatcaa----------gggtagttccttct-ggggctgtgagggaga-agctgcttcagggctctgccccagcttctgg-agtttactggtc-tctttagcgttcctcggcttgtagaggtgtcacccctatctctgccatcatcttcacatggcattctccctgtgtgtgagtcgcctccaaatctccccttttcatgaggacatca---------------------------------------ttcaacctcatc-aaac--tgatta------ca-tccgcagcgaccctatttccaaacaaggtcacc-------------tgccgaggtacggtaggggttagggcttcaacatacgaat
s panTro5.chr15               9588625 394 +  83230942 ggatgtgTG------tggattcat---------ttcctgtggctgctgtaacaaagtac-tgcaaacttgg-----------gggcttacacagtagaaa----------------------------ttctcacggttctggtggctggaaggctgagatcaa----------gggtggttccttct-ggggctgtgagggaga-agctgcttcagggctctgccccagcttctgg-agtttgctggtc-tctttagcgttcctcggcttgtagaggtgtcacccctatctctaccgtcatcttcacatggcattctccctgtgtgtgagtcgcctccaaatctccccttttcatgaggacatca---------------------------------------ttcaacctcatc-aaac--tgatta------ca-tctgcagcgaccctatttccaaacaaggtcacc-------------tgccgaggtacggtaggggttagggcttcaacatacgaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74122302 381 -  99763055 ggatgtgTG------tggattcct---------ttcctgtggctgctgtaacaaagta--tacaaacttgg-----------gggcttacacagtagaaa----------------------------ttctcacggttctggcggctggaaggctgagatcaa----------gggtggttccttct-ggggctgtgaggggga-agctgcttgagggctctgccccagcttctgg-agtttgctggtc-tctttagcgttcctcggcttgtagaggtgtcacccctatctctgccgtcatcttcacatggcattctccctgtgtgtgagtcgcctccaaatctccccttttcataaagacatca---------------------------------------tttaacctcatc-aaac--tgatta------ca-gctgcag------------caaacaaggtcacc-------------tgccgaggtacagtaggggttagggcttcaacatacgaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       166236 393 -    281578 ggatgtgTG------tggattcct---------ttcctgtggctgctgtaacaaagta--tacaaacttgg-----------gggcttacacagtagaaa----------------------------ttgtcacagttctggcagctggaaggctgagatcaa----------gggtggttccttcc-ggggctgtgaggcgga-agctgcttgagggctctgccccagcttctgg-agtttgctggtc-tctttagcgttcctcggcttgtagaggtgtcacccctatctctgccgtcatcttcacatggcattctccctgtgtgtgagtcgcctccaaatctccccttttcataaggacatcg---------------------------------------tttaaccttatc-aaac--tgatta------ca-gctgcagcgaccctatttccaaacaaggtcacc-------------tgccgaggtacagtaggggttagggcttcaacatacgaat
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71025778 394 + 121039945 GGATGTGTG------tggattcat---------ttcctgtggctgctgtaacaaagtac-tacaaacttgg-----------gggcttacacagtagaaa----------------------------ttctcatggttctggcatctggaaggctgagatcaa----------gagtggttgcttct-ggggctgtgagggaga-agctgcttcagggctctgccccagcttctgg-agtttgctggtc-tctttagcgttcctcggtttgtagaggtgtcaccccgatctctgccgtcatcttcacatggcattctccctgtgtgtgagtcgcctccaaatctccccttttcataaggacatca---------------------------------------ttcagcctcatc-aaac--tgatta------ca-tctgcagcaaccctatttccaaacaaggtcacc-------------tgctgaggtacggtaggggttagggcttcaacatacgaat
i nomLeu3.chr6              I 123 C 0
s rheMac8.chr7              164335821 394 - 169600520 GAATGTGTG------tggatttgt---------ttcctgtggctgctgtaataaagtac-tacagacttgg-----------gggcttacacagcagtag----------------------------ttctcacagttctggaggccggaaggctgagatcaa----------gggtggttccttct-ggggctgtgagggaga-agctgcttcagggctctgccccagcttgtgg-agtttgctggtc-tctttagcgttctttggcttgtagaggtgtcaccccgatctctgccgtcatcttcacatggcattctccctgtgtgtgagtcgcctccaaatctcctcttttcataaggacatca---------------------------------------ttcaatctcatc-aaac--taagta------ca-tctgcagcgaccctatttccaaacaaggtcacc-------------tgccgaggtactgtaggggtttggacttcaacatatgaat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165656787 394 - 171882078 GAATGTGTG------tggatttgt---------ttcctgtggctgctgtaataaagtac-tacagacttgg-----------gggcttacacagcagtag----------------------------ttctcacggttctggaggccggaaggctgagatcaa----------gggtggttccttct-ggggctgtgagggaga-agctgcttcagggctctgccccagcttgtgg-agtttgctggtc-tctttagcgttctttggcttgtagaggtgtcaccccgatctctgccgtcatcttcacatggcattctccctgtgtgtgagtcgcctccaaatctcctcttttcataaggacatca---------------------------------------ttcaatctcatc-aaac--taagta------ca-tctgcagcgaccctatttccaaacaaggtcacc-------------tgccgaggtactgtaggggtttggacttcaacatatgaat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       511588 392 +   2379783 gaa--tgtg------tgggtttgt---------ttcctgtggctgctgtaataaagtac-tacagactcag-----------gggcttacacagcagtag----------------------------ttctcacggttctggaggccggaaggctgagatcaa----------gggtggttccttct-ggggctgtgagggaga-agctgcttcagggctctgccccagcttgtgg-agtttgctggtc-tctttagcgttctttggcttgtagaggtgtcaccccgatctctgccgtcatcttcacatggcattctccctgtgtgtgagtcgcctccaaatctcctcttttcataaggacatcg---------------------------------------ttcagtctcatc-aaac--taagta------ca-tctgcagcgaccctatttccaaacaaggtcacc-------------tgccgaggtactgtaggggtttggacttcaacatatgaat
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       468331 394 +   4116138 GAATGTGTG------tggatttgt---------ttcctgtggctgctgtaataaagtac-tacagacctgg-----------gggcttacacagcagtag----------------------------ttctcacggttctggaggccggaagcctgagatcaa----------gggtggttccttct-ggggctgtgagggaga-agctgcttcagggctctgccccagcttgtgg-agtttgctggtc-tgtttagcgttctttggcttgtagaggtgtcaccccgatctctgccgtcgtcttcacatggcattctccctgtgtgtgagtcgcctccaaatctcctcttttcataaggacatca---------------------------------------ttcagtctcatc-aaac--taagta------ca-tctgcagcgaccctatttccaaacaaggtcacc-------------tgccgaggtactgtaggggtttggacttcaacatatgaat
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53900629 393 +  58131712 gaatgtgtg------tgGATTTCt---------ttcctgtggctgctgtaataaagtacttacagacttgg-----------gggcttacacagcagtag----------------------------ttctcacggttctggaggccggaaggctgagatcaa----------gggtggttccttct-ggggctgtgagggaga-agctgcttcagggctctgccccagcttgtgg-agtttgctggtc-tctttagcgttctttggcttgtagaggtgtcaccccgatctctgccgtcatcttcacatggcattctccc--tgtgtgagtcgcctccaaatctcctcttttcataaggacatca---------------------------------------ttcaatctcatc-aaac--taatta------ca-tctgcagtgaccctatttccaaacaaggtcacc-------------tgccgaggtactgtaggggtttggacttcaacatatgaag
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       521083 394 -   3636681 GAATGTGTG------tggatttgt---------ttcctgtggctgctgtaataaagtac-tgcagacctgg-----------gggcttacacagcagtag----------------------------ttctcacggttctggaggccggaagcctgagatcaa----------gggtggttccttct-ggggctgtgagggaga-agctgcttcagggctctgccccagcttgtgg-agtttgctggtc-tctttagcgttctttggcttgtagaggtgtcaccccgatctctgccgtcatcttcacatggcattctccctgtgtgtgagtcgcctccaaatctcctcttttcataaggacatca---------------------------------------ttcagtctcatc-aaac--taagta------ca-tctgcagcgaccctatttccaaacaaggtcacc-------------tgccgaggtactgtaggggtttggacttcaacatgtgaat
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       500682 394 -   4457520 GAATGTGTG------tggatttgt---------ttcctgtggctgctgtaataaagtac-tacagacttgg-----------gggcttacacagcagtag----------------------------ttctcacggttctggaggccagaaggctgagatcaa----------gggtggttccttct-ggggctgtgagggaga-agctacttcagggctctgccccagcttctgg-agtttgctggtc-tcttcagcgttctttggcttgtagaggcgtcacccccatctctgccgtcatcttcacatggcattctccctgtgtgtgagtcgcctccaaatctcctcttttcataaggacatca---------------------------------------ttcaatcacatc-aaac--taatta------ca-tctgcagtgaccctatttccaaacaaggtcacc-------------tgccgaggtactgtaggggtttggacttcaacatacgaat
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154531367 404 - 158406734 GGATGTGTG------tggattagt---------ctcctttggctgctgtaacaaagtac-tacaaactcga-----------gggcttacacagtagaag----------------------------ttctcatggttctgcaggctggaaggctgagatcaa----------gggtggtttcttctgggggctgtgagggaga-agctgccccatggctttgccctggcttctgg-tgtttgctggtc---tctggcatt-cgttgcttgtagaagtgtccccccaaccccggctgtcaccttcacctggtgttctccttgtgtgtgagtcgcctccaaatctcccctttccataagggcatcg---------------------------------------ttcaacctcatc-aaac--ccatta------cg-cctgcggcggtcccatttccaaacagggt-actgttccaaacagggttctgaggtactgtggggcttagagcttcaacatgtgagt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             363181 396 -   2682657 GGATGTGTG------tgcgttagt---------ctcctgtggctgcggtaacaaagtac-tgcgaactcga-----------gggcttacacagtagaag----------------------------ttctcacggttctgtaggctggaaggctgagatcaa----------gggtggtgccttcagggggctgtgacggaga-agctgcttcagggctttgccccggctgctgg-cgtttgccggtc-tgtttggcattcctttgcttgtggaagtgtccccccgacctcggccgtcaccttcacctggcgttctccctgtgtgtgaggcgcctccaaatctcccctttccgtaagggcatcg---------------------------------------ttcaacctcatc-aaac--ccatta------cacccttcggcggccctattttcaaacaggatcacc-------------ttctgaggtactgtaggggttagagcttcgacatgtgaat
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       389482 394 -   2086007 gggtgtgtg------tgGATGCgt---------ctcctgtggctgctgtgaaaaggt-c-tacaaactcga-----------gggctcacacagcagaag----------------------------ttctcatggttctgcaggctggaaggctgagatcga----------gggtggttccttctcggggctgtgagggaga-agctgctccagggcattgccctggcttctgg-tgtttgctggtc-tctttggcattcctttgcttgtagaagtgtccccccgaccccggccgtcaccttcacctggcgttctccttgtgtgtgagtcgcctccaaatctcccctttgcgtaagggcagcg---------------------------------------ttcaacctcatc-aaac--ccgtta------ca-cctgcagcggccctgtttccaaacagggtcacc-------------ttccgaggtactgcaggcgttagagcttcaacatgtgaat
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       450853 395 +   3831555 ggatgtgTG------tggattagt---------ctcctttggctgctgtaacaaagtac-tacaaactcga-----------gggcttacacagtagaag----------------------------ttctcatggttctgcaggctggaaggctgagaacaa----------gggtggttccttctgggggctgtgagggaga-agctgctccagggctttgccctggcttctgg-tgtttgctggtc-tctttggcattcctttgcttgtagaagcgtccccccgacctcggccgtcaccttcacctggcgttctccttgtgtgtgagtcgcctccaaatctcccctttccataaggtcatcg---------------------------------------ttcaacctcatc-aaac--ccatta------ca-cctgcagcggccctatttccaaacagggtcacc-------------ttctgaagtactgtaggggttagagcttcaacatgtgaat
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             473160 392 +   3845361 gggtgtgtgagtgtAtgtatgagt---------ttcctctggctgccataacagccgac-taggggct-gg-----------tggtgcaaacaggagaag----------------------------ttct-aca--tttggaggctggaagtccaacagcag----------ggctggctgctgctgagagccctgagggaga-gtctgcccca--gcccgtccccaaattctggtgggttgctggtgatctttggtgatccttgccttgttcaagcatcaccctgatttctacctttgtgtttatatgacattctctgtgtgtg---------tctcaatttcccctttttatatggacatca---------------------------------------tgtagcctcatctaaac--tgtttgtggtatta-tttataaagaatctatttacaaatacg-ttatg-------------ttctaaggtactgtagg-gttagggc-tcagcatataaat
i otoGar3.GL873689          I 6 C 0
s mm10.chr7                  56148927 298 + 145441459 --GGGTGTA------AGGACTAATGTAAAAAGGTTTCTGGGACCGCGGTACGAAGGCGT-TAGAAACAAGG-----------TATGGTAAACAACAGGaa------------------------------------gtcctgg------------------cag----------ggctagttccttct-caggctaccagggaga-atctgttctagg---cttctctagcattggt-ggtttgcttggc-aattt---------------------tcgtcacatcaacctcgtctgt-----------------------------------------------atcttcttgtaagaatgcca---------------------------------------gttaccctcatc-tgacctcattta------ta-tcttcagtgactccatttccacacaaaaccaca-------------ttttgagatacta--------agCACTTTAACATGTGAAT
i mm10.chr7                 C 0 I 34
s canFam3.chr3               60051327 460 -  91889043 GTGTGCATG------tgtactaga---------gtcctaggccttctataacaacttac-tgcaaatttggttagtttgcttggggtgccacatcaaagtatcgtacacctgggtggcctaaatttttttctccatgttcgagaggctagaagttcaagatcaaggtgtcaactggctgtttccttctgagagctgtgagggaaagacctgttctaggcttttcccctaacttctgatagtttgctggcaatctctggcattcctttg-ttgtag-------------attactgccttcatcttcaccta----------tgtgtcttatctgtcaccaaatctcaccttttaataaggacaccagtcataattggattagggggacctcccccccttatctagttcaacctcttctaaac--aaatta------ca-tcttccatggcctcatttccaaataag-tcaca-------------ttctgagatatgg--gggtttaggacttcaacatactggt
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13523073 1335 +  16154928 I
e dasNov3.JH562051             435365 1045 +    563711 I

a score=133439.000000
s hg38.chr15_KI270851v1_alt    201793 15 +    263054 tttgca----attctgaat-------
s panTro5.chr15               9589019 15 +  83230942 tttgca----attctgaat-------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74122683 15 -  99763055 tttgca----attctgaat-------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       166629 15 -    281578 tttgca----attctgaat-------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71026172 15 + 121039945 tttgca----attctgaat-------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164336215 15 - 169600520 tttgca----attctgaat-------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165657181 15 - 171882078 tttgca----attctgaat-------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       511980 15 +   2379783 tttgca----attctgaat-------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       468725 15 +   4116138 ttggca----attctgaat-------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53901022 15 +  58131712 tttgca----attctgaat-------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       521477 15 -   3636681 tttgca----attctgaat-------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       501076 15 -   4457520 tttgca----attctgagt-------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154531771 15 - 158406734 tttgca----gttctggat-------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             363577 15 -   2682657 tttgCA----GTTCTGGAT-------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       389876 15 -   2086007 tttgca----attctggat-------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       451248 15 +   3831555 tttgca----attctagat-------
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             473552 17 +   3845361 gttgaaggggatact--at-------
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60051787 22 -  91889043 tttgtg----agcaggaggacactgt
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56149225 34 + 145441459 I
e proCoq1.NW_012148396v1     13523073 1335 +  16154928 I
e dasNov3.JH562051             435365 1045 +    563711 I

a score=3707332.000000
s hg38.chr15_KI270851v1_alt    201808 366 +    263054 tcaacccgtaacaCtggcttcaaacaacaaatttgttctctcagagttctggagaccagaagtcccaaatccaggt-gcgggcagggccatgcttcttccacag-gctct------------------------------------------------------------ag-----gggaaggtccttccttacttt---gtccagcttctgggagctccaggcttccttggtgttgggacgcattgtgccagtctctgcctgcgtcttcaca--------tggcccctgcccctgtgttctgcatgtccttttctgtctctgaaaggactctttcattgagttt--ctttgactctaatccaa--catgatgtcacctaaattcttaccttaatgacgtctacagagacctcatt---aaataagatcatattctgaggttccgaatgt
s panTro5.chr15               9589034 362 +  83230942 tcaacccgtaacaCtggcttcaaacaacaaatttgttctctcagagttctggagaccagaagtcccaaatccaact-gcgggcagggccatgcttcttccacag-gctct------------------------------------------------------------ag-----gggaaggtccttccttacttc---gtccagcttctgggagctccaggcttccttggtgttgggacgcattgtgccagtctctgcctgcgtcttcaca--------tggcccctgcccctgtgtgctgcatgtccttttctgtctctgaaaggactct----ttgagttt--ctttgactctaatccaa--tatgatgtcacctaaattcttaccttaatgacgtctacagagacctcatt---aaataagatcatattctgaggttccgaatgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74122698 362 -  99763055 tcaacccataacactggcctcaaacaacaaatttgttctctcagagttctggagaccagaagtcccaaatccaggt-gcaggcagggccatgcttcttccacag-gctct------------------------------------------------------------ag-----gggaaggtccttccttacttt---gtccagcttctgggagctccaggcttccttggtgttgggatgcattgtgccagtctctgcctgcgtcttcaca--------tggcccctgcccctgtgttctgcatgtccttttctgtctctgaaaggactct----ttgagttt--ctttgactctaatccaa--catgatgtcacctaaattcttaccttaatgacgtctacagagacctcatt---aaataagatcatattctgaggttccgaatgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       166644 360 -    281578 tcaacccataacactggcctcaaacaacaaatttgttctctcagagttctggagaccagaagtcccaaatccaggt-gcgggcaggaccatgcttcttccacag-gctct------------------------------------------------------------ag-----gggaaggtccttccttacttt---gtccagcttctgggagctccaggcttccctggtgttgggacgcattgtgccagtctctgcctgcgtcttcaca--------tggcccctgcccctgtgttctgcatgtccttttctgtctctgaaaggactct------gagttt--ctttgactgtaatccaa--catgatgtcacctaaattcttaccttaatgacgtctacagagacctcatt---aaataagatcatattctgaggttccCAATGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71026187 366 + 121039945 tcaacccgtaacaCTGGCctcaaacaacaaatttgttctctcagagttctggagaccagaagtcccaaatccaggt-gcaggcagggccatgctccctccacag-gctct------------------------------------------------------------ag-----gggaaggtccttccttacctc---atccagcttctgggagctccaggcttccttggtgtggggacgcattgtgtcagtctctgcctgcgtcttcacg--------tggaccctgcccctgtgttctgcatgtccttttctgtctctgaaaggactctttcattgagttt--ctttgactctaatccaa--cgtgatgtcacctaaattcttaccttaatgacgtctacagagacctcatt---aaataagatcatattctgaggttccgaatgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164336230 362 - 169600520 tcaacccacaacaCtggtttcaaacaacagatttgttctctcagagttctggagtccagaggtcccaaatccaggt-gcgggtagggccgtgctccctccacag-gctct------------------------------------------------------------aa-----gggaaggtccttccttacctt---gtccagcttctgggagctccaggcttccttggtgtggggacgcattgtgccagtgtctgcctgcgtcttcaca--------tggcccctgccgctgtgttctgcatgtccttttctgcctctgaaaggactctttcattgag------tttgactctaatccaa--catgatgtcacctaaattcttaccttaatgaggtctacagagacctcatt---aaataagatcatattctgaggttctgagtgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165657196 362 - 171882078 tcaacccacaacactggtttcaaacaacagatttgttctctcagagttctggagtccagaggtcccaaatccaggt-gcgggtagggccgtgctccctccacag-gctct------------------------------------------------------------aa-----gggaaggtccttccttacctt---gtccagcttctgggagctccaggcttccttggtgtggggacgcattgtgccagtgtctgcctgcgtcttcaca--------tggcccctgcccctgtgttctgcatgtccttttctgcctctgaaaggactctttcatagag------tttgactctaatccaa--catgatgtcacctaaattcttaccttaatgaggtctacagagacctcatt---aaataagatcatattctgaggttctgagtgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       511995 362 +   2379783 tcaacccacaacactggtttcaaacaacagatttgttctctcagagttctggagtccagaggtcccaaatccaggt-gccggtagggccgtgctccctccacag-gctct------------------------------------------------------------aa-----gggaaggtccttccttacctt---gtccagcttctgggagctccaggcttccttggtgtggggatgcattgtgccagtgtctgcctgcgtcttcaca--------tggcccctgcccctgtgttctgcgtgtccttttctgcctctgaaaggactctttcattgag------tttgactctaatccaa--catgatgtcacctaaattcttaccttaatgaggtctacagagacctcatt---aaataagatcatgttctgaggttctgagtgt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       468740 365 +   4116138 tcaacccacaacaCtggtttcaaacaacagatttgttctctcagagttctggagtccagaggtcccaaatccaggt-gcgggtagggccatgctccctccacag-gctct------------------------------------------------------------aa-----gggaaggtccttccttaccttaaggtccagcttctgggagctccaggcttccttggtgtggggacgcattgtgccagtgtctgcctgcgtcttcgca--------tggcccctgcccctgtgttctgcatgtccttttctgcctctgaaaggactctttcattgag------tttgactctaatccaa--catgatgtcacctaaattcttaccttaatgaggtctacagagacctcatt---aaataagatcatattctgaggttctgagtgt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53901037 362 +  58131712 tcaacccacaacactagtttcaaacaacagatttgttctctcagagttctggagtctggaggtcccaaatccaggt-gcgggtagggccatgctccctccacag-gctct------------------------------------------------------------aa-----gggaaggtccttccttacctt---gtccagcttctgggagctccaggcttccttggtgtggggacgcattgtgccagtgtctgcctgcgtcttcaca--------tggcccctgcccctgtgttctgcatgtccttttctgcctctgaaaggactctttcattgag------tttgactctcatccaa--catgatgtcacctaaattcttaccttaatgaggtctacagagacctcatt---aaataagatcatattctgaggttctgagtgt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       521492 362 -   3636681 tcaacccacaacaCtggtttcaaacaacagatttgttctctcatagttctggagtccagaggtcccaaatccaggt-gcgggtagggccatgctccctccacag-gctct------------------------------------------------------------aa-----gggaaggtccttccttacctt---gtccagcttctgggagctccaggcttccttggtgtggggacgcattgtgccagtgtctgcctgcgtcttcaca--------tggcccctgcccctgtgttctgcatgtccttttctgcctctgaaaggactctttcattgag------tttgactctaatccag--catgatgtcacgtaaattcttaccttaatgaggtctacagagacctcatt---aaataagatcatattctgaggttctgagtgt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       501091 361 -   4457520 tcaacccacaacaCtggtttcaaacaacaagtttgttctctcagagttctggagtccagaggtgccaaatccaggt-gcgggtagggccatgctccttccacag-gctct------------------------------------------------------------aa-----aggaaggcccttccttacctt---gtccagcttctgcgagctccaagcttccttgctgtggggacgcattgtgccagtgtctgcctgcgtcttcaca--------cggcccc-gcccgtgtgttctgcatgtccttttctgcctctgaaaggactctttcattgag------tttgactctaatccaa--catgatgtcacgtaaattcttacctcaatgaggtctacagagacctcatt---aaataagatcatattctgaggttctgagtgt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154531786 352 - 158406734 tccacccataacaCtggcttgaaacaacaaatttgttcactcagaggtctggagaccagaagtcccaaatccaggt-gtggacggggccgtgatccctccacag-gttgt------------------------------------------------------------ag-----gggagggcccttccttacctc---gtccagtttctgggagctccaggcttccttgccctgg--------------agtctctgcctgcgtcatcacg--------tggcccctgcccctgtgttccgccagtccttttctgtctctgaaaggactctttccttgagttt--gttggactctaatccaa--catgatgttacctaaattcttaccttaatgacgtctccagaggcctcatt---aaataacatcatattctgaggttccgagtgt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             363592 416 -   2682657 TCCACCTATGACACTGGCCTGAAACAACAAATTTGTTCTCCCA-AGTTGTGGAGACCAGAAGTGCCAAATCCAGGT-GCTGCCCGGGCCGTGCTCCCTCCACAG-GTTGTCGTGGGGGCCCTTCCTTACCTCGTCCaatccaggtgtggaccgggccttgctgcctccacaggttctgggggggctcttccttacctc---atccagtttctgggagctccaggcttccttggcctgg--------------agtctctgcctgcgtcatcacg--------tggcccctgcccctgtgttctgcctgtccttttctgtctctgaaaggactctttccttgagttc--gtttgactgtaatccaa--catgatgttacgtaaattcttaccttaatgacgtctccagaggcctcatt---aagtaagatcatattctgaggttccgagtgt
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       389891 351 -   2086007 tccacctataacaCtggctcgaaacagcaaatttgttctcccagagttctggagaccagaagtcccaaatccaggt-gtggaccgggccgtgccccctccacag-gttct------------------------------------------------------------ag-----gggaggacccttccttacctc---gtccagcttctgggagctccaggc-tccttggcctgg--------------agtctctgcctgcgtcgtcacg--------tggcccctgcccctgtgttctgcgtgtccttttctgtctctgaaaggactctttccttgagctc--gtctgactctaatccaa--catgatgctacctaaattcttaccttaatgacgtctccagagacctcatt---aaataagatcatattctgaggttctgagtgt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       451263 347 +   3831555 ttcacccataacaCtggcttgaaacaacaaatttgttctctcagagttctggagaccagaagtcccaaatccaggt-gtggacagggc-----tccctccacag-gttct------------------------------------------------------------tg-----gggagggcccttcctcacctc---gtccagtttctgggagctccaggcttccttggcctgg--------------agtctctgcctgcgtcttcacg--------tgacccctgcccctgtgttccgcctgtccttttctgtctctgaaaggactctttccttgagttt--gttcgactctaatccaa--catgatgctacctaaattcttaccttaatgacgtctccagaggcctcatt---aaataagatcatattctgaggttccgagtgt
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             473569 302 +   3845361 tcagcccataacaCtggctcaaagcaacaaatgtgttgttgcagag-tctagagatcataagtcccaaatccaggg-gtgggcagggccgtgctccctccgcag-actcc------------------------------------------------------------ca-----ggga-----cgttcttgtctt---gtccagctcctg---gctccaggctt-cttggcttgtcgcTGCATCACCCAGGGCTCTGCCT-CTTCCTCACA--------AAGCCGCCTCCCCAGCTCTTGATGTGTCCTTTCTGGTTCTTAGAAGGACTTTTTCACTGGA-TT--GGTTCACTCTGATCCAA---------------------------------------------------T---AAATACGATCAGATTCTGAGGTTCCAGG---
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56149259 309 + 145441459 TCAACTTGTAATG-------------------TTGTTCCTTTAGAGTTCTGGACATTAGGAATCTTCAAGGCAGGTGGTCCACAGAGCCGTGTGCTCCTCACTGAGCTCT------------------------------------------------------------AC-----AGGAAGGTCC--CCTTTCCTT---------CTGTTGTCAGCCTGGGGC----------TGGGACCTCACTGT---AGTCTCTGCATCTCTCTGCTTG--------TAGTC--------TGCGTGACTTATGACCTTTTCTCTTCTGGGCATCGTTCATTTGCTGAG-------------CTCACCCAGCCCAGCATCTCATCTCAGCTTTAGTATTAA-----TCCAAGTAGACTTTATTTCCAGCTAGGATCTAATGCTGGTGTTCTTATTGT
i mm10.chr7                 I 34 I 1715
s canFam3.chr3               60051809 349 -  91889043 tcagcgcataacagaattatagaac--------------ctcagagttttggagaccagaagtccaaaatcaaggt-gtcagcagaactgtgttcccttcagag-acttc------------------------------------------------------------aa-----gagaggatcctttcttgtctc---ttccagcttctggtagctgcaaggtgtcttagcttgaggctaaagcactttacagtctgcct-cattttcacacaaagggctgacttgtgtctctg---------tgtccttttctgcctcttatag-agactttaattggatttaatgtccactctgattcag--tataatgtcctctcaat-----ccttaagtatatctacaaagagtttatttccaaataaggccaaattctgaggttttgggtga
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13523073 1335 +  16154928 I
e dasNov3.JH562051             435365 1045 +    563711 I

a score=1048594.000000
s hg38.chr15_KI270851v1_alt    202174 111 +    263054 atgtgaagttggaggacaggcacagtttaat-cca-taaAGTGTTTGTGTGTGTGGA-GAGTAAGTATGA-GAAATGTGAGCTGAGGGAGTGGGGTG----AGTGTGCATGTGACTGAG
s panTro5.chr15               9589396 111 +  83230942 gtgtgaagttgggggacaggcacagtttaat-cca-taaAGTGTTTGTGTGTGTGGA-GAGTAAGTATGA-GAAATGTGAGCTGAGGGAGTGGGGTG----AGTGTGCATGTGACTGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74123060 111 -  99763055 gtgtgaagttgggggacaggcacagtttaat-cca-taaAGTGTTTGTGTGTGTGGA-GAGTAAGTATGA-GAAATGTGAGCTGAGGGAGTGGGGTG----AGTGTGCATGTGACTGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       167004 111 -    281578 GCGTGAAGTTGGGGGACAGGCACAGTTTCAT-CCA-TAAAGTGTTTGTGTGTGTGGA-GAGTAAGTATGA-GAAATGTGAGCTGAGGGAGTGGGGTG----AGTGTGCATGTGACTGAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71026553 108 + 121039945 atatgaagttggggtacaggcacagtttaatccca-taaAGTGTT----TGTGTGGA-GAGTAAGTATGA-GAAATGTGAGCTGAGGGAGTGGGGTG----AGTGTGCATGTGACTGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164336592 109 - 169600520 atgtgaagttgggggacaggcacagtttaat-ccg-taaAGTGTT--TGTGTGTGGA-GTGTAAGTATGA-GAAATGTGAACTGAGGGAGTGGGGTG----AATGTGCATGTGACTGAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165657558 109 - 171882078 atgtgaagttgggggacaggcacagtttaat-ccg-taaAGTGTT--TGTGTGTGGA-GTGTAAGTATGA-GAAATGTGAACTGAGGGAGTGGGGTG----AATGTGCATGTGACTGAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       512357 109 +   2379783 atgtgaagttgggggacaggcacagtttaat-ccg-taaAGTGTT--TGTGTGTGGA-GTGTAAGTATGA-GAAATGTGAACTGAGGGAGTGGGGTG----AATGTGCATGTGACTGAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       469105 105 +   4116138 atgtgaagttgggggacaggcacagtttaat-ccg-taaAGTGTT--TGTGTGTGGA-GTGTAAGTATGA-GAAATGTGAACT----GAGTGGGGTG----AATGTGCATGTGACTGAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53901399 109 +  58131712 atgtgaagttgggggacaggcacagtttaat-cca-taaAGTGTT--TGTGTGTGGA-GTGTAAGTATGA-GAAATGTGAACTGAGGGAGTGGGGTG----AATGTGCATGTGACTGAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       521854 109 -   3636681 atgtgaagttgggggacaggcacagtttaat-ccg-taaAGTGTT--TGTGTGTGGA-GTGTAAGTATGA-GAAATGTGAACTGAGGGAGTGGGGTA----AATGTGCATGTGACTGAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       501452 111 -   4457520 atgtgaagttgggggacaggcagagtttaat-cca-tCAAGTGTCTGTGTGTGTGGA-GTGTAAGTATGA-GAGATGTGAACTGAGGGAGTGGGGTG----AGTGTGCAGGTGACTGAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154532138 109 - 158406734 gtgtgaagttgg--gacaggcacagtttaat-ccG-GAAAGTGCTTGAGTGTGTGAA-GTGTGAGTATGA-GAAATGTGAGCTGAGGGAGTGGGGTG----AGCGTGCATGTGCCTGAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             364008 105 -   2682657 atgtgaagttgg-agtcaggcacaggttagc-ccg-taaAGTGCTTGAGTGTGTGGA-GTGTGAGGATGA-GAAATGTGAGCCGAGGGA-----GTG----AGTGTGCATGTGCCTGAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       390242 104 -   2086007 atgtgaagctgg-ggacaggcacactttagc-ccg-taaAGTGCTTGAGTGTGTGGA-GTATGAGGATGA-GAAATGTGAGCTGAGGGAGTGGGGTC----AG------TGTGCCTGAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       451610 110 +   3831555 atgtgaagttgg-ggacaggcacagtttagt-cca-taaAGTGTTTGAGTGTGTGGA-GTGTGAGTATGA-GAAATACGAACTGAGGGAGTGGGGTG----AGTGTGCATGTGCCTGAG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             473871 100 +   3845361 -------AATGGTGCTCAGGTGGAATTCAGT-GCA-TAAAATGTT--TGTGTGCGAATGTGAAATAGTGACGGAGTGTGAGTTGAGCAAGTGGGGCA----Agtgtg--tgtgactg--
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60052158 112 -  91889043 acatgaattctgggg---gatacagttcaac-ccaCTGAAATGTT--TGTATGTGAATGGGTACGTGTGA-GGAGAATGAATTGATAAAGTGGGAGGAACCAGTGTGTGTGTAAGTGTG
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56149568 1715 + 145441459 I
e proCoq1.NW_012148396v1     13523073 1335 +  16154928 I
e dasNov3.JH562051             435365 1045 +    563711 I

a score=753245.000000
s hg38.chr15_KI270851v1_alt    202285  91 +    263054 AGTGAGCACGTGTGAGTGTGGGTG----GGTATGTGGGCGTCCTCCAGTGT----------GTGTGAGAGCAT-GCATGTATTAGTGGTGTGCTGGAGCGTCCGCA
s panTro5.chr15               9589507  91 +  83230942 AGTGAGCACATGTGAGTGTGGGTG----GGTATATGGGCGTCCTCCAGTGT----------GTGTGAGAGCAT-GCGTGTATTAGTGGTGTGCTGGAGCGTCCGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74123171  91 -  99763055 AGTGAGCACATGTGAGTGTGGGTG----GGTATATGGGCGTCCTCCAGTGT----------GTGTGAGAGCAT-GCGTGTATTAGTGGTGTGCTGGAGCGTCCGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       167115  91 -    281578 AGTGAGCACATGTGAGTGTGGGTG----GGTATGTGGGCGTGCTCCAGTGT----------GTGTGAGAGCAT-GCGTGTATTAGTGGTGTGCTGGAGCGTCCGCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71026661  91 + 121039945 AGTGAGCACATGTGGGTGTGGGTG----GGTATGTGGGCGTGCTCCAGTGT----------GTGTGAGAGCAT-GCGTGTATTAGTGGTGTGCTGGAGCGTCTGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164336701 101 - 169600520 AGTGAGCCCCTGTGAGTGTGGGTG----AGGATGTAGACATGCTCCAGTGTGTGGGAGGTTGTGTGAGAGCAT-GCGTGTATTAGTGGTGTGCCAGAGTGTCCGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165657667 101 - 171882078 AGTGAGCCCCTGTGAGTGTGGGTG----AGGATGTAGACATGCTCCAGTGTGTGGGAGGTTGTGTGAGAGCAT-GCGTGTATTAGTGGTGTGCCAGAGTGTCCGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       512466 101 +   2379783 AGTGAGCCCCTGTGAGTGTGGGTG----AGGATGTAGACATGCTCCAGTGTGTGTGAGGTTGTGTGAGAGCAT-GCGTGTATTAGTGGTGTGCCAGAGTGTCCGCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       469210  97 +   4116138 ----AGCCCCTGTGAGTGTGGGTG----AGGATGTAGGCATGCTCCAGTGTGTGTGAGGTCGTGTGAGAGCAT-GCGTGTATTAGTGGTGTGCCAGAGTGTCCGCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53901508 101 +  58131712 AGTGAGCCCCTGTGAGTGTGGGTG----AGGATGTAGGCATGCTCCAGTGTGTGTGAGGTTGTGTGAGAGCAT-GCGTGTATTAGTGGTGTGCCAGAGTGTCCGCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       521963  97 -   3636681 ----AGCCCCTGTGAGTGTGGGTG----AGGATGTAGGCATGCTCCAGTGTGTGTGAGGTTGTGTGAGAGCAT-GCGTGTATTAGTGGTGTGCCAGAGTGTCCGCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       501563 101 -   4457520 GGTGAGCCCCTGTGAGTGTGGGTG----AGGATGTAGGTGTGCTCCAGTGTGTGGGAGGTTGTGTGAGAGCAT-GCGTGTATTAGTGGTGTGCCGGAGTGTCCGCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154532247 101 - 158406734 AGTGAGCACATGTGGGTGTGGGTG----AGTCCATGGGCGGGCTTCAGTGTGTGTGAGGTTGTGTGAGGACAT-GCATGTGTTAGTGGTGTGCCGGAGCGTCTGCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             364113  78 -   2682657 GGTGAG--TCTGTGGGTGC-----------------------CTTCA--GTGTGTGAGGGTGTGTGAGGACAT-GCATGTGTTAGTGGTGTTCTGGAGCGTCTGCA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       390346  96 -   2086007 AGTGAG--CACGTGGGTGTGGGTG----AGTCCGTGGGCGC-CTTCA--GTGTGCGAGGGTGTGTGAGGACAT-GCATGTGTTAGTGGTGTTCCGGAGCGTCTGCA
i cebCap1.NW_016107707v1    C 0 I 608
s aotNan1.NW_018503298v1       451720 102 +   3831555 AGTGAGCACGTGTAGGTGTGGGTG----AGTCCGTGGGCAGGCTTCCGTGTGTGTGAGTATGTGTGAGGACATGGCATGTGTTAGTGGTGTGCCGGAGTGTCTGCA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             473971  79 +   3845361 ----agcaaatgtgagtgtgggtgtaaatgtatgtgagtgtatttcaggtacttctgcactgtgtgttagaat-g--------agtgttgtg--------------
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56149568 1715 + 145441459 I
e proCoq1.NW_012148396v1     13523073 1335 +  16154928 I
e dasNov3.JH562051             435365 1045 +    563711 I
e canFam3.chr3               60052270   0 -  91889043 C

a score=656044.000000
s hg38.chr15_KI270851v1_alt    202376 100 +    263054 CATATTGATGAGAGTGAGTGTGTTAGCGGTCGATGGGCAAGTGGCTGAGCGTTTGTGTTGCAAGTGTGATGGTGTGTTTGTAGCATGTGGT--------TGTGTGGGT
s panTro5.chr15               9589598  98 +  83230942 CATATTGATGAGAGTGAGTGTGTTAGCGGTTGATGGGCAAGTGGCTGAGCGTTTGTGTTGCAAGTGTGACAATGTGTTTGTAAC--GTGGT--------TGTGTGGGT
i panTro5.chr15             C 0 I 27
s panPan2.chr15              74123262  98 -  99763055 CATATTGATGAGAGTGAGTGTGTTAGCGGTCGATGGGCAAGTGGCTGAGCGTTTGTGTTGCAAGTGTGACAATGTGTTTGTAAC--ATGGT--------TGTGTGGGT
i panPan2.chr15             C 0 I 27
s gorGor5.CYUI01000141v1       167206 100 -    281578 CATATTGATGAGAGTGAGTGTGTTAGCGGTCGATGGGCAAGTGGCTGAGCGTTTGTGTTGCAAGTGTGACAATGTGTTTGTAGCATGTGGT--------TGTGTGGGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71026752  97 + 121039945 CGTAT---TGAGAGTGAGTGTGTTAGCGGTCGATGGGCAAGTGGCTGAGCATTTGTGTTGCAAGTGTGACGGTGTGTTTGTAGCATGTGGT--------TGTGTGGGT
i nomLeu3.chr6              C 0 I 27
s rheMac8.chr7              164336802 100 - 169600520 CTTATTGATGAGAGTGAGTGTCTTAGCGGTTGATGGGCAAGTGGCTGAGCATGTGTGTTGCAAGTGTGGCGGTGTGTTTGTAGCGTGTGGT--------TGTGTGTGT
i rheMac8.chr7              C 0 I 29
s macFas5.chr7              165657768 100 - 171882078 CTTATTGATGAGAGTGAGTGTCTTAGCGGTTGATGGGCAAGTGGCTGAGCATGTGTGTTGCAAGTGTGGCGGTGTGTTTGTAGCGTGTGGT--------TGTGTGTGT
i macFas5.chr7              C 0 I 29
s macNem1.NW_012011934v1       512567 100 +   2379783 CTTATTGATGAGAGTGAGTGTCTTAGCGGTTGATGGGCAAGTGGCTGAGCATGTGTGTTGCAAGTGTGGCGGTGTGTTTGTAGCGTGTGGT--------TGTGTGTGT
i macNem1.NW_012011934v1    C 0 I 29
s cerAty1.NW_012001462v1       469307 100 +   4116138 CTTATTGATGAGAGTGAATGTCTTAGCGGTTGATGGGCAAGTGGCTGAGCATGTGTGTTGCAAGTGTGGCGGTGTGTTTGTAGTGTGTGGT--------TGTGTATGT
i cerAty1.NW_012001462v1    C 0 I 29
s chlSab2.chr26              53901609  97 +  58131712 CATAT---TGAGAGTGAGTGTCTTAGCGGTTGATGGGCAAGTGGCTGAGCATGTGTGTTGCAAGTGTGGCGGTGTGTTTGTAGCGTGTGGT--------TGTGTGTGT
i chlSab2.chr26             C 0 I 29
s manLeu1.NW_012102332v1       522060 100 -   3636681 CTTATTGATGAGAGTGAGTGTCTTAGCGGTTGATGGGCAAGTGGCTGAGCATGTGTGTTGCAAGTGTGGCGGTGTGTTTGTAGTGTGTGGT--------TGTGTGTGT
i manLeu1.NW_012102332v1    C 0 I 29
s colAng1.NW_012115278v1       501664 100 -   4457520 CATATTGATGAGAGTGAGTGTGTTAGCGGTTGATGGGCAAGTGGCTGAGCATTTGTGTTGCAAGTGTGACGCTGTGTTTGTAGCGTGTGGT--------TGTGTGTGT
i colAng1.NW_012115278v1    C 0 I 29
s calJac3.chr6              154532348 100 - 158406734 TGTATTT-----AGTGAGTGTGGTAGTGGTTGATGGGCAAGCAGCTGAGAGTTTGTGTTGCAAGCGTG---GTGTGTTTGAATTGTGTGGGTATGTGGATGTGTGCAT
i calJac3.chr6              C 0 I 15
s saiBol1.JH378292             364191  75 -   2682657 TGTATTT-----AGCTAGTGTGAT---------------AGCAGCTGAGAATT--TGTTGCAAGTGTG---GTGTGTTTGAATTGTGTGGG--------TGCGTGCAT
i saiBol1.JH378292          C 0 I 15
s aotNan1.NW_018503298v1       451822  90 +   3831555 TTTATTT-----AGTGAGTGTGGTAGCGGTTGATGGGCAAGCGGCTGAGAGTT--GGTTGCAGGCgtg---gtgtgtttgaattgtgtggg--------tttgtgggt
i aotNan1.NW_018503298v1    C 0 I 23
s otoGar3.GL873689             474050  78 +   3845361 --tatggatgaacgtgtgtgggagagt-------------gtgtctgagtg---ATGCAGCACG-GTGAGAGTCTGTGGACACCGTGAGG---------TGTGTGT--
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56149568 1715 + 145441459 I
e proCoq1.NW_012148396v1     13523073 1335 +  16154928 I
e dasNov3.JH562051             435365 1045 +    563711 I
e canFam3.chr3               60052270   0 -  91889043 C
e cebCap1.NW_016107707v1       390442 608 -   2086007 I

a score=922367.000000
s hg38.chr15_KI270851v1_alt    202476 115 +    263054 GTGTG-TATGTCCATGAGAGC-------ATGTGAGTGGGCAGGTGACTACATTCAGGTGAAGT--------------GGGAGTGAAAGTGTCGGTGCAT---TGAGCCAATGTGTGT------------GTGTGAGGGTGAGCACGAGGGAG
s panTro5.chr15               9589723 115 +  83230942 GTGTG-TATGTCCATGAGAGC-------ATGTGAGTGGGCAGGTGACTACATTCAGGTGAAGT--------------GGGAGTGAAAGCGTCAGTGCAT---TGAGCCAGTGTGTGT------------GTGTGAGGGTGAGCACGAGGGAG
i panTro5.chr15             I 27 C 0
s panPan2.chr15              74123387 115 -  99763055 GTGTG-TATGTCCATGAGAGC-------ATGTGAGTGGGCAGGTGACTACATTCAGGTGAAGT--------------GGGAGTGAAAGCGTCAGTGCAT---TGAGCCAGTGTGTGT------------GTGTGAGGGTGAGCACGAGGGAG
i panPan2.chr15             I 27 C 0
s gorGor5.CYUI01000141v1       167306 115 -    281578 GTGTG-TATGTCCATGAGAGC-------ATGTGAGTGGGCAGGTGACTACATTCAGGTGAAGT--------------GGGAGTGAAAGCGTCAGTGCAT---TGAGCCAGTGTGTGT------------GTGTGAGGGTGAGCACGAGGGAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71026876 115 + 121039945 GTGTG-TATGTCCATGAGAGC-------ATGTGAGTGGGCAGGTGACTACATTCAGGTGAAGT--------------GAGAATGAAAGCGTCAGTGCGT---TAAGCCAGTGTGTGT------------GTGTGAGGGTGAGCACCAGGGAG
i nomLeu3.chr6              I 27 C 0
s rheMac8.chr7              164336931  99 - 169600520 GTGTG-TGTGTCCATGAGAGC-------ATGTGAGTGGG--------------CAGGTGAAGT--------------GGGAGTGAGAGCGCCAGTGCAT---TGAGCCA--GTGTGT------------GTGTGAGGGTGAGCACGAGGGAG
i rheMac8.chr7              I 29 C 0
s macFas5.chr7              165657897  99 - 171882078 GTGTG-TGTGTCCATGAGAGC-------ATGTGAGTGGG--------------CAGGTGAAGT--------------GGGAGTGAGAGCGCCAGTGCAT---TGAGCCA--GTGTGT------------GTGTGAGGGTGAGCACGAGGGAG
i macFas5.chr7              I 29 C 0
s macNem1.NW_012011934v1       512696  99 +   2379783 GTGTG-TGTGTCCATGAGAGC-------ATGTGAGTGGG--------------CAGGTGAAGT--------------GGGAGTGAGAGCACCAGTGCAT---TGAGCCA--GTGTGT------------GTGTGAGGGTGAGCACGAGGGAG
i macNem1.NW_012011934v1    I 29 C 0
s cerAty1.NW_012001462v1       469436  99 +   4116138 GTGTG-TGTGTCCATGAGAGC-------ATGTGAGTGGG--------------CAGGTGAAGT--------------GGGAGTGAGAGCACCAGTGCAT---TGAGCCA--GTGTGT------------GTGTGAGGGTGAGCACGAGGGAG
i cerAty1.NW_012001462v1    I 29 C 0
s chlSab2.chr26              53901735  97 +  58131712 GTGTG-TGTGTCCATGAGAGC-------ATGTGAGTGGG--------------CAGGTGAAGT--------------GGGAGT--GAGCGCCAGTGCAT---TGAGCCA--GTGTGT------------GTGTGAGGGTGAGCACGAGGGAG
i chlSab2.chr26             I 29 C 0
s manLeu1.NW_012102332v1       522189  99 -   3636681 GTGTG-TGTGTCCATGAGAGC-------ATGTGAGTGGG--------------CAGGTGAAGT--------------GGGAGTGAGAGCGCCAGTGCAT---TGAGCCA--GTGTGT------------GTGTGAGGGTGAGCACGAGGGAG
i manLeu1.NW_012102332v1    I 29 C 0
s colAng1.NW_012115278v1       501793  99 -   4457520 GTGTG-TGTGTCCATGAGAGC-------ATGTGAGTGGG--------------CAGGTGAAAT--------------GGGAGTGAGAGCGCCAGTGCAT---TGAGCCA--GTGTGT------------GTATGAGGGTGAGCACGAAGGAG
i colAng1.NW_012115278v1    I 29 C 0
s calJac3.chr6              154532463  98 - 158406734 GTGTG-TATGTCCATGAGGGC-------ACACGAGTGGGCAGGTGAC--------------GT--------------GGGAGTGAGAGCATCAGTGCAT--TTGAGCCA--C--TGT------------GTGTGAGGGTGAGCAAGAGGGAG
i calJac3.chr6              I 15 C 0
s saiBol1.JH378292             364281 115 -   2682657 GTGTGTTATGTCCATGAGGGC-------ATACAAGTGGGCAGGTGCCTGCATGCAGGTGAAGT--------------GGGAGTGAGCACATCGGTGCAT--TTGAGCCA--CTGTGT------------GTGTGAGGGTGAGCAAGAGGGAG
i saiBol1.JH378292          I 15 C 0
s cebCap1.NW_016107707v1       391050 114 -   2086007 GTGTG-TATGTCCATGAGGGC-------ATACAAGTGGGCAGGTGACAGCATGCAGATGAAGT--------------GGGAGTGAGCGCCTCAGTGCAT--TTGAGCCA--CTGTGT------------GTGTGAGGGTGAGCAAGAGGGAG
i cebCap1.NW_016107707v1    I 608 C 0
s aotNan1.NW_018503298v1       451935 114 +   3831555 GTGTG-TATGTCCATGAGGGC-------ACACAAGTGGGCCAGTGACTGCATGCAGGTGAAGT--------------GGGGGTGAGAGCATCAGTGCAT--CTGAGCCA--CTGTGT------------GTGCGAGGGTGAGCAAGAGGGAG
i aotNan1.NW_018503298v1    I 23 C 0
s otoGar3.GL873689             474128 148 +   3845361 TTGGG-GCTGT-CATCAGGACTCATCATGTGGGAGTGGGTGGAGGACTGCACGTGGGCCAAGTCGGGCTGAGCACACGGGGATGTGTGCATCAGCATGTGAGTGAGTTA--CTGTGTGACATGTGAATGGTTTGAGTGTGAGCATGCCCGAG
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56149568 1715 + 145441459 I
e proCoq1.NW_012148396v1     13523073 1335 +  16154928 I
e dasNov3.JH562051             435365 1045 +    563711 I
e canFam3.chr3               60052270   0 -  91889043 C

a score=114894.000000
s hg38.chr15_KI270851v1_alt    202591 23 +    263054 ------GCATGA----GTGTGAGTGTGAGGGGA
s panTro5.chr15               9589838 23 +  83230942 ------GCATGA----GTGTGAGTTTGAGGGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74123502 23 -  99763055 ------GCATGA----GTGTGAGTGTGAGGGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       167421 23 -    281578 ------GCATGA----GTGTGAGTGTGAGGGGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71026991 17 + 121039945 ------GCATGA----GTG------TGAGGGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164337030 17 - 169600520 ------GCATGA----GTG------TGAGGGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165657996 17 - 171882078 ------GCATGA----GTG------TGAGGGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       512795 17 +   2379783 ------GCATGA----GTG------TGAGGGGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       469535 17 +   4116138 ------GCATGA----GTG------TGAGGGGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53901832 17 +  58131712 ------GCATGA----GTG------TGAGGGGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       522288 17 -   3636681 ------GCATGA----GTG------TGAGGGGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       501892 16 -   4457520 ------GCGTGA----CTG------TGAGGGG-
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154532561 21 - 158406734 ------GCATGAGCATGTG------TGTCGGGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             364396 19 -   2682657 ------TCATGAGC--GTG------TGTCGGGA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       391164 21 -   2086007 ------GCATGAGCATGTG------TCAGGGGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       452049 21 +   3831555 ------GCATGAGCGTGTG------TGTCGGGA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13524408 23 +  16154928 GCATGGATGTGT----GTG------TGAGGGTG
i proCoq1.NW_012148396v1    I 1335 C 0
s otoGar3.GL873689             474276 18 +   3845361 -----GGTGTGA----GTG------TGGGTGGG
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56149568 1715 + 145441459 I
e dasNov3.JH562051             435365 1045 +    563711 I
e canFam3.chr3               60052270  0 -  91889043 C

a score=235997.000000
s hg38.chr15_KI270851v1_alt    202614 21 +    263054 TTACTGGGTGTGTGAATGAGA
s panTro5.chr15               9589861 21 +  83230942 TTACTGGGTGTGCCAGTGAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74123525 21 -  99763055 TTACTGGGTGTGCCAGTGAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       167444 21 -    281578 TTACTGGGTGTGCGAATGAGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71027008 21 + 121039945 TTACTCGGTGTGCGAATGAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164337047 21 - 169600520 TTACTGGGTGTGTGAATGAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658013 21 - 171882078 TTACTGGGTGTGTGAATGAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       512812 21 +   2379783 TTACTGGGTGTGTGAATGAGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       469552 21 +   4116138 TTACTGGGTGTGTGAATGAGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53901849 21 +  58131712 TTACTGGGTGTGTGAATGAGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       522305 21 -   3636681 TTACTGGGTGTGTGAATGAGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       501908 19 -   4457520 --ACTGGGTGTGTGAATGAGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154532582 21 - 158406734 TTACTGGGTGTGTGAATGAGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             364415 21 -   2682657 TTCCTGGGTGTGTGAACGAGA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       391185 21 -   2086007 TTACTGGGAGTGTGAATGAGA
i cebCap1.NW_016107707v1    C 0 I 21
s aotNan1.NW_018503298v1       452070 21 +   3831555 TTACTGAGTGTGTGAATGAGA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13524431 21 +  16154928 TTACTGGGTGTGTGAATGAGA
i proCoq1.NW_012148396v1    C 0 I 555
e mm10.chr7                  56149568 1715 + 145441459 I
e dasNov3.JH562051             435365 1045 +    563711 I
e canFam3.chr3               60052270  0 -  91889043 C
e otoGar3.GL873689             474294  0 +   3845361 C

a score=236630.000000
s hg38.chr15_KI270851v1_alt    202635 49 +    263054 --CACCCAGT----------GTAAGTGTAAGTCAGTGAGGGTTGGTGAGTGTGAGGAAGTA
s panTro5.chr15               9589882 41 +  83230942 --CA------------------AAGTGTAAGTCAGTGAGGCTTGGTGAGTGTGAGAAAGTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74123546 41 -  99763055 --CA------------------AAGCGTAAGTCAGTGAGGCTTGGTGAGTGTGAGAAAGTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       167465 59 -    281578 --CACCCAGTGTAAGTGTAAGTCAGTGTAAGTCAGTGAGGCTTGGTGAGCGTGAGGAAGTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71027029 41 + 121039945 --TG------------------AAGTGTAAGTCAGTGAGGCTTGGTGAGTGTGAGGAAGTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164337068 37 - 169600520 --CG------------------AAGTGTA----AGTGAGGCTTGGTGAGTGTGAGGAAGTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658034 37 - 171882078 --CG------------------AAGTGTA----AGTGAGGCTTGGTGAGTGTGAGGAAGTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       512833 37 +   2379783 --CG------------------AAGTGTA----AGTGAGGCTTGGTGAGTGTGAGGAAGTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       469573 37 +   4116138 --CG------------------AAGTGTA----AGTGAGGCTTGGTGAGTGTGAGGAAGTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53901870 41 +  58131712 --CG------------------AAGTGTAAGTCAGTGAGGCTTGGTGAGTGTGAGGAAGTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       522326 37 -   3636681 --CG------------------AAGTGTA----AGTGAGGCTTGGTGAGTGTGAGGAAGTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       501927 41 -   4457520 --TG------------------AAGTGTAAGTCAGTGAGGCTTGGTGAGTGTGAGGAAGTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154532603 39 - 158406734 GACA------------------AAGTATA----AGTCAGGCTTGGTGATTGTGAGGAATTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             364436 19 -   2682657 GACG------------------AAGT--------GTCAGGCTTGG----------------
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       452091 39 +   3831555 GACG------------------AAGTGTA----AGTCAGGCTTGGTGAGTGTGAGGAAGTG
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56149568 1715 + 145441459 I
e proCoq1.NW_012148396v1     13524452 555 +  16154928 I
e dasNov3.JH562051             435365 1045 +    563711 I
e canFam3.chr3               60052270  0 -  91889043 C
e otoGar3.GL873689             474294  0 +   3845361 C
e cebCap1.NW_016107707v1       391206 21 -   2086007 I

a score=255442.000000
s hg38.chr15_KI270851v1_alt    202684 32 +    263054 TGAGTGGGTGGCAGGCACAA--GTGTAAGTGTGC
s panTro5.chr15               9589923 33 +  83230942 TGAGTGGGTGGCA-GCACAAGTGTGTAAGTGTGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74123587 33 -  99763055 TGAGTGGGTGGCA-GCACAAGTGTGTAAGTGTGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       167524 28 -    281578 ----TGGGTGGCAGGCACAA--GTGTAAGTGTGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71027070 32 + 121039945 TGAGTGGGTGGCAGGCACAA--GTGTAAGTGTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164337105 32 - 169600520 TGAGTGGGTGGCAGGCACAA--GTGTAAGTGTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658071 32 - 171882078 TGAGTGGGTGGCAGGCACAA--GTGTAAGTGTGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       512870 32 +   2379783 TGAGTGGGTGGCAGGCACAA--GTGTAAGTGTGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       469610 32 +   4116138 TGAGTGGGTGGCAGGCACAA--GTGTAAGTGTGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53901911 32 +  58131712 TGAGTGGGTGGCAGGCACAA--GTGTAAGTGTGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       522363 32 -   3636681 TGAGTGGGTGGCAGGCACAA--GTGTAAGTGTGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       501968 32 -   4457520 TGAGTGGGTGGCAGGCACAA--GTGTAAGTGTGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154532642 32 - 158406734 TGAGTGGGTGGCAGGCACAA--GTGTAAGTGTGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             364455 30 -   2682657 CGAGTGGGTG--AGGCACAA--GTGTAAGTGTGC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       391227 30 -   2086007 TGAGTGGGTG--AGGCACAA--GTGTAAGTGTGC
i cebCap1.NW_016107707v1    I 21 C 0
s aotNan1.NW_018503298v1       452130  3 +   3831555 -------------------------------TGC
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56149568 1715 + 145441459 I
e proCoq1.NW_012148396v1     13524452 555 +  16154928 I
e dasNov3.JH562051             435365 1045 +    563711 I
e canFam3.chr3               60052270  0 -  91889043 C
e otoGar3.GL873689             474294  0 +   3845361 C

a score=2454.000000
s hg38.chr15_KI270851v1_alt    202716 4 +    263054 GATT
s panTro5.chr15               9589956 4 +  83230942 GATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74123620 4 -  99763055 GATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       167552 4 -    281578 GATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71027102 4 + 121039945 GATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164337137 4 - 169600520 GATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658103 4 - 171882078 GATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       512902 4 +   2379783 GATT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       469642 4 +   4116138 GATT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53901943 4 +  58131712 GATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       522395 4 -   3636681 GATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502000 4 -   4457520 GATT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154532674 4 - 158406734 ACAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             364485 2 -   2682657 AC--
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       391257 2 -   2086007 AT--
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       452133 2 +   3831555 AC--
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56151283 4 + 145441459 GATT
i mm10.chr7                 I 1715 C 0
e proCoq1.NW_012148396v1     13524452 555 +  16154928 I
e dasNov3.JH562051             435365 1045 +    563711 I
e canFam3.chr3               60052270 0 -  91889043 C
e otoGar3.GL873689             474294 0 +   3845361 C

a score=237011.000000
s hg38.chr15_KI270851v1_alt    202720 30 +    263054 GAGTGCGAGCATTTGTGTAAATGTGTATGA
s panTro5.chr15               9589960 30 +  83230942 GAGTGCGAGCATTTGTGTAAATGTGTATGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74123624 30 -  99763055 GAGTGCGAGCATTTGTGTAAATGTGTATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       167556 30 -    281578 GAGTGCGAGCATTTGTGTAAATGTGTATGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71027106 30 + 121039945 GAGTGCGAGCATTTGTGTAAACGTGTATGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164337141 26 - 169600520 GAGGGTGAGCATTTGTGTAAATG----TGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658107 26 - 171882078 GAGGGTGAGCATTTGTGTAAATG----TGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       512906 26 +   2379783 GAGGGTGAGCATTTGTGTAAATG----TGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       469646 26 +   4116138 GAGGGTGAGCATTTGTGTAAATG----TGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53901947 26 +  58131712 GAGGGCGAGCATTTGTGTAAATG----TGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       522399 26 -   3636681 GAGGGTGAGCATTTGTGTAAATG----TGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502004 26 -   4457520 GAGGGCGAGCATTTGTGTAAATG----TGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154532678 29 - 158406734 GAGTGTGAGCA-TTGTGTAAACGTGTACCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             364487 30 -   2682657 GAGTGTGAGCATTTGTGTAAACGTGTATGA
i saiBol1.JH378292          C 0 I 639
s cebCap1.NW_016107707v1       391259 30 -   2086007 GAGTGTGAGCATATGTGTAAACGTGTATGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       452135 30 +   3831555 GAGTGTGAGCATTTGTGTAAACATGTATGC
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56151287 29 + 145441459 GCATGTGCATATATATGTAAGTGAGCACA-
i mm10.chr7                 C 0 C 0
s dasNov3.JH562051             436410 30 +    563711 GAGAGGGAGTGTGTAAGTGCATGCGGATGA
i dasNov3.JH562051          I 1045 C 0
e proCoq1.NW_012148396v1     13524452 555 +  16154928 I
e canFam3.chr3               60052270  0 -  91889043 C
e otoGar3.GL873689             474294  0 +   3845361 C

a score=35950.000000
s hg38.chr15_KI270851v1_alt    202750 4 +    263054 GTGC
s panTro5.chr15               9589990 4 +  83230942 GTGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74123654 4 -  99763055 GTGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       167586 4 -    281578 GTGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71027136 4 + 121039945 GTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164337167 4 - 169600520 ATGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658133 4 - 171882078 ATGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       512932 4 +   2379783 ATGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       469672 4 +   4116138 ATGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53901973 4 +  58131712 ATGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       522425 4 -   3636681 ATGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502030 4 -   4457520 ATGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154532707 4 - 158406734 GTGC
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       391289 4 -   2086007 GTGC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       452165 4 +   3831555 GTGC
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56151316 3 + 145441459 -TGC
i mm10.chr7                 C 0 C 0
s dasNov3.JH562051             436440 4 +    563711 GGGA
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13524452 555 +  16154928 I
e canFam3.chr3               60052270 0 -  91889043 C
e otoGar3.GL873689             474294 0 +   3845361 C
e saiBol1.JH378292             364517 639 -   2682657 I

a score=876927.000000
s hg38.chr15_KI270851v1_alt    202754 113 +    263054 CTTGTGTCAGTGTGAGCACGAGTGA------------TGTTATTGTGAA----TGCGTGTGAGTGAATGTGAGCATTTTGCTTGTGTCAGTGAATGGGA--GGTTATAAC---AGTATAGGTGTGAGTGTAAAG
s panTro5.chr15               9589994 107 +  83230942 CTTGTATCTGTGTGAGCATGAGTGA------------------TGTGAA----TGCATGTGAGTGAATGTGAGCATTTTGCTTGTGTCAGTGAATGGGA--GGTTATAAC---AGTATAGGTGTGAGTGTAAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74123658 106 -  99763055 CTTGTATCTGTGTGAGCATGAGTGA------------------TGTTAA---TTGCATGCGTGTGAGTGTGAGCATTTTGCTTGTGTCAGTGAATGGGA--GGTTATAAC-----TATAGGTGTGAGTGTAAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       167590 103 -    281578 CTTGTGTCAGTGTGAGCACGAGTGA------------TGTTATTGTGAA----TGCGT----GTGAGTGTGAGCATTTTGCTTGTGTCAG----TGGGA--GGTTGTAAC-----TGTAGGTGTGAGTATAAAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71027140 110 + 121039945 CTTTTGTCAGTGTGAGCATGAGTGA---------------CATTGTGAA----TGCGTGTGAGTGAATGTGAGCATTTTGCTTGTGTCAGTGAGTGGGA--GGTTGTAAC---AGTGTAGGTGTGAGTGTAAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164337171 115 - 169600520 CTTGTGTCAGTGTGAGCACGAGTGA----------CGTGTTATTGTGAG----TGCGTGTGCATGAATGTGAGCATTTTGCTTGTGTCAGTGAGTGGGA--GGTTGTAAC---AGTGTAGGTGTGAGTGTCAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658137 115 - 171882078 CTTGTGTCAGTGTGAGCACGAGTGA----------CGTGTTATTGTGAG----TGCGTGTGCATGAATGTGAGCATTTTGCTTGTGTCAGTGAGTGGGA--GGTTGTAAC---AGTGTAGGTGTGAGTGTCAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       512936 115 +   2379783 CTTGTGTCAGTGTGAGCACGAGTGA----------CGTGTTATTGTGAG----TGCGTGTGCATGAATGTGAGCATTTTGCTTGTGTCAGTGAGTGGGA--GGTTGTAAC---AGTGTAGGTGTGAGTGTCAAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       469676 115 +   4116138 CTTGTGTCAGTGTGAGCACGAGTGA----------CGTGTCATTGTGAG----TGCGTGTGCATGAATGTGAGCATTTTGCTTGTGTCAGTGAGTGGGA--GGTTGTAAC---AGTGTAGGTGTGAGTGTCAAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53901977 111 +  58131712 CTTGTGTCAGTGTGAGCACGAGGGA----------CGTGTTATTTTGAG----TGCGTGTGCATGAATGTGAGCATTTTGCTTGTGTCAGTGAGTGGGA--GGTTGTAAC---AGTGTAGGTGTGTG----AAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       522429 115 -   3636681 CTTGTGTCAGTGTGAGCACGAGTGA----------CGTGTTATTGTGAG----TGCGTGTGCATGAATGTGAGCATTTTGCTTCTGTCAGTGAGTGGGA--GGTTGTAAC---AGTGTAGGTGTGAGTGTCAAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502034 115 -   4457520 CTTGTGTCAGTGTGAGCACGAGTGA----------CGTGTTATTGGGAG----TGTGTGTGCATGGATGTGAGCATTTTGCTTGTGTCAGTGAGTGGGA--GGTTGTAAC---AGTGTAGGTGTGAGTGTCAAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154532711 106 - 158406734 CTTGTGTC--TGTGAGCATGCACGA----------CGTGTTAC--------------TGTGAGTGAATGTGAGCGTTTTGCTTGTGCCAGTGAGAGGGC--GGTTGTAACAACAGCACAGGCATGAGTGTAAAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             365156 116 -   2682657 CCTGTGTCAGTGTGAGCACGCATGA----------CGTGTTACTGTGAG----TGCATGTGAGTGAATGTGAGCATTTTGCTTGTGTCAGT--GAGGGA--GGTTGTAACAACAGTACAGGTGTGAGTGTAAAG
i saiBol1.JH378292          I 639 C 0
s cebCap1.NW_016107707v1       391293 116 -   2086007 CTTGCGTCAGTGTGAGCACGCATGA----------CGTGTTACTGTGGG----TGCATGTTAGTGAATGTGAGCATTTTGCTTGTGTCAGT--GAGGGA--GGTTGTAACAACACTACAGGCATGAGTGTAAAG
i cebCap1.NW_016107707v1    C 0 I 59
s aotNan1.NW_018503298v1       452169 115 +   3831555 --CTTGTCAGTGTGAGCACACATGA----------CGTGTTACTGTGAG----TGCCTGTGAGTGAATGTGAGCATTTTGCTTGTGTCAGTGAGAGGAA--GGTTGTAACAACAGTACAGGCATGAGTGTAAA-
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56151319 120 + 145441459 ATTGTGTTGGTGTCAGAC--AGTGATTTCTGTGGTTGCACTATTTTAAAAGTATACAGGAGCGTTAAGGTCAGAATTTTGAGTGTCACAGCGAGGAGGCTTGGTTG--GT---GATGCGGGAGAAAG-------
i mm10.chr7                 C 0 C 0
s dasNov3.JH562051             436444  82 +    563711 GTTGTGAGTGTGTGAGTATTGAGAG----------GGAGTGATtgtgag----tgcatgtgagtatatgtgtg---------tgggcaagtatatgtga--gtgcat---------------------------
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13524452 555 +  16154928 I
e canFam3.chr3               60052270   0 -  91889043 C
e otoGar3.GL873689             474294   0 +   3845361 C

a score=353528.000000
s hg38.chr15_KI270851v1_alt    202867 52 +    263054 TGAGAAAGT--------GTGTGGGTAAAGGTGTGAGTGGGTG--AGTAATCGGTCATTACTA
s panTro5.chr15               9590101 48 +  83230942 TGAGAAA------------GTGGGTAAAGGTGTGACTGGGTG--AGTAATCGGTCATGACTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74123764 48 -  99763055 TGAGAAA------------GTGGGTAAAGGTGTGACTGGGTG--AGTAATCGGTCATGACTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       167693 50 -    281578 TGAGAAAGT--------GTGTGGGTAAAG--GTGAGTGGGTG--AGTAATCGGTTGTGACTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71027250 50 + 121039945 TGAGAAT----------GTGTGGGTAAAGGTGTGAGTGGGTG--AGTAATCCGTTCTGACTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164337286 52 - 169600520 TGAGCAAGT--------GTGTGGGTACAGGTGTGAGTGGGTG--AGTAATCGGTTGTGACTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658252 52 - 171882078 TGAGCAAGT--------GTGTGGGTACAGGTGTGAGTGGGTG--AGTAATCGGTTGTGACTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       513051 52 +   2379783 TGAGCAAGT--------GTGTGGGTACAGGTGTGAGTGGGTG--AGTAATCGGTTGTGACTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       469791 52 +   4116138 TGAGCAAGT--------GTGTGGGTACAGGTGTGAGTGGGTG--AGTAATCGGTTGTGACTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53902088 52 +  58131712 TGAGCAAGT--------GTGTGGGTACAGGTGTGAGTGGGTG--AGTAATCGGTTGTGACTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       522544 52 -   3636681 TGAGCAAGT--------GTGTGGGTACAGGTGTGAGTGGGTG--AGTAATCGGTTGTGACTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502149 52 -   4457520 TGAGCAAGT--------GTGTGGGTACAGGTGTGAGTGGGTG--AGTAATCGGTTGTGACTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154532817 58 - 158406734 --AGAAAGCAGGTGTGAGTGTGGGTACAGGTGTGAGTGGGTG--AGTCATCGGTTGTGACCA
i calJac3.chr6              C 0 I 2
s saiBol1.JH378292             365272 39 -   2682657 --AGAA-------------------GCGGATGTGAGTGGGCG--AGTCATCGGTTGTGACCA
i saiBol1.JH378292          C 0 I 2
s aotNan1.NW_018503298v1       452284 59 +   3831555 -GAGAAAGTGGCTGTGAGTGTGGGGACAGGTGTGAGTGGATG--AGTCATCAGTTGTGACCA
i aotNan1.NW_018503298v1    C 0 I 2
s mm10.chr7                  56151439 51 + 145441459 TGAGCACAT--------GTCTGTGCATAGGTGGATGTGAGTGCAAGTGGACATGTATGA---
i mm10.chr7                 C 0 C 0
s dasNov3.JH562051             436526 42 +    563711 -----gaat--------gtgtgtgtgcaagtgtgaatg--ta--attgagcaagtatga---
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13524452 555 +  16154928 I
e canFam3.chr3               60052270  0 -  91889043 C
e otoGar3.GL873689             474294  0 +   3845361 C
e cebCap1.NW_016107707v1       391409 59 -   2086007 I

a score=460879.000000
s hg38.chr15_KI270851v1_alt    202919 63 +    263054 GTGTT--------------GAGGAGTGTGAGTGCATATGTGAGTTTTTGTATGCATTGG-GAGGGGTA--AGTGTATGTG
s panTro5.chr15               9590149 60 +  83230942 GTGTT-----------------GAGTGTGAGTGCATATGTGAGTTTTTGTATGCATTGG-GAGGGGTA--AGTGTATGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74123812 60 -  99763055 GTGTT-----------------GAGTGTGAGTGCATATGTGAGTTTTTGTATGCATTGG-GAGGGGTA--AGTGTATGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       167743 63 -    281578 GTGTT--------------TAGGAGTGTGAGTGCATATGTGAGTTTTTGTATGCATTGG-GAGGGGTA--AGTGTACGTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71027300 59 + 121039945 GTGTT-----------------GAGTGTGAGTGCATATGTGAG-TTTTGTATGCATTGG-GAGGGGTA--CGTGTATGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164337338 61 - 169600520 GTGTT--------------TAGGAGTGTGAGTGCATC--TGAGTTTCTGTATGCATGGG-GAGGGGTA--AGTGTATGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658304 61 - 171882078 GTGTT--------------TAGGAGTGTGAGTGCATC--TGAGTTTCTGTATGCATTGG-GAGGGGTA--AGTGTATGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       513103 61 +   2379783 GTGTT--------------TAGGAGTGTGAGTGCATC--TGAGTTTCTGTATGCATTGG-GAGGGGTA--AGTGTATGTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       469843 61 +   4116138 GTGTT--------------TAGGAGTGTGAGTGCATC--TGAGTTTCTGTATGCATTGG-GAGGGGTA--AGTGTATGTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53902140 59 +  58131712 GTGTT--------------TTGGA--GTGAGTGCGTC--TGAGTTTCTGTATGCATTGG-GAGGGGTA--AGTGTATGTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       522596 61 -   3636681 GTGTT--------------TAGGAGTGTGAGTGCATC--TGAGTTTCTGTATGCATTGG-GAGGGGTA--AGTGTATGTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502201 57 -   4457520 GTGTT--------------TAGGAGCGTGAGTGCATC--TGAGTT----TATGCATTGG-GAGGGGTA--AGTGTATGTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154532877 63 - 158406734 GTGTT--------------TAGGACTGTGAGTG--CCGGTGAGTTTTGGGATGCATTTG-GAGGCGTAAGAgtgtatgtg
i calJac3.chr6              I 2 C 0
s saiBol1.JH378292             365313 65 -   2682657 GTGTT--------------TAGGAGTGTGAGTGCACATGTGAGCTTCGGGATGCGTTGG-GAGGGCAAAAAGTTTACGTG
i saiBol1.JH378292          I 2 C 0
s cebCap1.NW_016107707v1       391468 65 -   2086007 GTGCT--------------TAGGAATTTGAGTGCATATGTGAGCTTCGGGATGCGTTGG-GAGGGGTAAAAGTGTACATG
i cebCap1.NW_016107707v1    I 59 C 0
s aotNan1.NW_018503298v1       452345 65 +   3831555 GTGTT--------------TAGGAGTGTGAGTGCATATGTGAGTTTTGAGATGCATTGG-GAGGGGTAAAAATGTATATG
i aotNan1.NW_018503298v1    I 2 C 0
s mm10.chr7                  56151490 76 + 145441459 ATGTTAGAGTTTGTCTAAGTAGTTGTTTAAACATGTC--TTATTTTATGTGTATGAGGGAGAGGGATG--CATATACATG
i mm10.chr7                 C 0 C 0
s dasNov3.JH562051             436568 41 +    563711 atgtt--------------gatgaatgtaagagtgtt------------------tttg-agagagtt--agtgtg----
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13524452 555 +  16154928 I
e canFam3.chr3               60052270  0 -  91889043 C
e otoGar3.GL873689             474294  0 +   3845361 C

a score=1106850.000000
s hg38.chr15_KI270851v1_alt    202982 117 +    263054 AGAGTGCATGGGAGTGTGTGTCAGCTTGCATCT---GTT---TGTGCA-----TACGTG---TGACTGGG---------AT--TG----TGTGT--GTGTTAGTGATTGCGACAGTGGTGTGAGT---GC-ACCT-GAAAGTGT--GAGGGT-------GGG--
s panTro5.chr15               9590209 118 +  83230942 AGAGTGCATGGGA--GTGTGTCAGCTTGCATCT---GTTGTGTGTGCA-----TACGTG---TGACTGGG---------AT--TG----TGTGT--GTGTGAGTGATTGCGACAGTGGTGTGAGT---GC-ACCT-GAAAGTGT--GAGGGT-------GGG--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74123872 120 -  99763055 AGAGTGCATGGGAGTGTGTGTCAGCTTGCATCT---GTTGTGTGTGCA-----TACGTG---TGACTGGG---------AT--TG----TGTGT--GTGTTAGTGATTGCGACAGTGGTGTGAGT---GC-ACCT-GAAAGTGT--GAGGGT-------GGG--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       167806 122 -    281578 AGAGTGCATAGGAGTGTGTGTCAGCTTGCATCT---ATTGTGTGTGCA-----TACGTG---TCACTGGG---------ATTGTG----TGTGT--GTGTTCGTGATTGCGACAGTGGTGTGAGT---GC-ACCT-GAGAGTGT--GAGGGT-------GGG--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71027359 121 + 121039945 AGAGTGCATAGGA--GTGTGTCAGCTTGCATCTTAGGTTGTGTGTGCA-----TATGTG---TGACTGGG---------AT--TG----TGTGT--GTGTTAGTGATTGCGACAATGGTGTGAGT---GC-ACCT-GAGAATGT--GAGGGT-------GGG--
i nomLeu3.chr6              C 0 M 6354
s rheMac8.chr7              164337399 119 - 169600520 AGAGTGCATAGGA----GTGTCAGCTTGCATCTTAGGTTGTGTGTGCA-----TATGTG---TGACTGGG---------AT--TG----TGTGT--GTGTTAGTGATTGCGACAGTGGTGTGAGT---GC-ACCT-GAGAGTGT--GAGGGT-------GGG--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658365 119 - 171882078 AGAGTGCATAGGA----GTGTCAGCTTGCATCTTAGGTTGTGTGTGCA-----TATGTG---TGACTGGG---------AT--TG----TGTGT--GTGTTAGTGATTGCGACAGTGGTGTGAGT---GC-ACCT-GAGAGTGT--GAGGGT-------GGG--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       513164 123 +   2379783 AGAGTGCATAGGAGTGTGTGTCAGCTTGCATCTTAGGTTGTGTGTGCA-----TATGTG---TGACTGGG---------AT--TG----TGTGT--GTGTTAGTGATTGCGACAGTGGTGTGAGT---GC-ACCT-GAGAGTGT--GAGGGT-------GGG--
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       469904 123 +   4116138 AGAGTGCATAGGAGTGTGTGTCAGCTTGCATCTTAGGTTGTGTGTGCA-----TATGTG---TGACTGGG---------GT--TG----TGTGT--GTGTTAGTGATTGCGACAGTGGTGTGAGT---GC-ACCT-GAGAGTGT--GAGGGT-------GGG--
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53902199 123 +  58131712 AGAGTGCATAGGAATGTGTGTCAGCTTGCATCTTAGGTTGTGTGTGCA-----TATGTG---TGACTGGG---------AT--TG----TGTGT--GTGTTAGTGATTGCGACAGTGGTGTGAGT---GC-ACCT-GAGAGTGT--GAGGGT-------GGG--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       522657 123 -   3636681 AGAGTGCATAGGAGTGTGTGTCAGCTTGCATCTTAGGTTGTGTGTGCA-----TATGTG---TGACTGGG---------GT--TG----TGTGT--GTGTTAGTGATTGCGACAGTGGTGTGAGT---GC-ACCT-GAGAGTGT--GAGGGT-------GGG--
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502258 123 -   4457520 AGAGTGCATAGGAGTGTGTGTCAGCTTGCATCTTAGGTTGTGTGTGCA-----TATGTG---TGACTGGG---------AT--TG----TGTGT--GTGTTAGTGATTGCGACAGTGGTGTGAGT---GC-ACCT-GAGAGTGT--GAGGGT-------GGG--
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154532940 130 - 158406734 agagtgtctgtgagtgtgcatcagtttgcatcttagcttgtgtgtgc-------ctgag---tgactggg---------at--tg----tgtgtgtgtgtTAGCGATTGCGACAGTGGTGTGAGT---GC-ACCT-GAGAGAGT--GAGGGTGGGAGTGGGG--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             365378 130 -   2682657 AGAGTACTTGTGAGTGTGCATCAGTTTGCATCTTAGGTTGTGTGTGCA-----TATGAG---TGACTGGG---------AT--TGCGGCTGTGTCAGTGTCAGTGATTGAAACAGTGGTGTGAGTGCAGC-ACCT---GAGAGT--GAGGGT-------GGG--
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       391533 123 -   2086007 AGAGCATCTATGAGTGTGCATCAGTTTGCATCTTAGGTTGTGTGTGCA-----TATGAG---TGACTGGG---------AT--TG----TGTGT--GTGTCAGTGATTGCGACAGTGGTGTGAGT---GC-ACCT-GAGAGAGT--GAGGGT-------GGG--
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       452410 119 +   3831555 AGAG----TATGACTGTGCATCAGTTTGCATCTTAGGTTGTGTGTGCA-----TATGAG---TGACTGGG---------AT--TG----TGTGT--GTGTTAGTGATTGCGACAGTGTTGTGAGT---GC-ACCT-GAGAGAGT--GAGGGT-------AGG--
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56151566 114 + 145441459 AAAA-------------GTATGGGCTTGCATCTTAGGTTCTATATGTA-----TATGTGTAATGAATGGAGATTATATCAT--TC----TGATT--CTACTAGTGATC---ACAGTGGT---AGT---AT-AGGA-GAGAGTGT--GTGGGT-------A----
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60052270 112 -  91889043 AGAGTGCTTGTGAGTATGTGAC----TGAATCTGGGTGTAAGTGTGAGAGTTTTTTTTC---TGAGTAAG---------AC--TG----GGTAT--TTG--AGTGGCTACA-----GGTTTGAGT---ATGAAGT-GGCAgtgt--gaa---------------
i canFam3.chr3              C 0 I 2
s dasNov3.JH562051             436609  95 +    563711 agggtgtgtatgagtgggtgtgag----------------agtgagtA-----AATGGG---AGGGTCTG---------AA--ta----tgtgg--gggt-----------------gtgtgagt---ga-gccttgaggatgtcagtgggt-------aggga
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13524452 555 +  16154928 I
e otoGar3.GL873689             474294   0 +   3845361 C

a score=296662.000000
s hg38.chr15_KI270851v1_alt    203099 40 +    263054 TGTATGAGTGCCCAT----GAGTGTGTC------TGAATAACTTAGTATC
s panTro5.chr15               9590327 40 +  83230942 TGTATGAGTGCCCAT----GAGTGTGTC------TGAATAACTTAGTATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74123992 40 -  99763055 TGTATGAGTGCCCAT----GAGTGTGTC------TGAATAACTTAGTATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       167928 40 -    281578 TGTGTGAGTGCCCAT----GAGTGTGTC------TGAATAACTTAGTATT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164337518 40 - 169600520 TGTGTGGATGCCCAT----GGGTGTGTC------TGAATAACTTCGTATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658484 40 - 171882078 TGTGTGGATGCCCAT----GGGTGTGTC------TGAATAACTTCGTATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       513287 40 +   2379783 TGTGTGGATGCCCAT----GGGTGTGTC------TGAATAACTTCGTATG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470027 40 +   4116138 TGTGTGGATGCCCAT----GGGTGTGTC------TGAATAACTTCGTATG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53902322 40 +  58131712 TGTGTGGATGCCCAT----GGGTGTGTC------TGAATAACTTCGTATG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       522780 40 -   3636681 TGTGTGGATGCCCAT----GGGTGTGTC------TGAATAACTTCGTATG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502381 40 -   4457520 TGTGTGGGTGCCCAT----CGGTGTGTC------TGAATAACTTCATATG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154533070 34 - 158406734 GGTGTGGGTGCCCAT----GAGTGTGTC------TGAGTAACTT------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             365508 34 -   2682657 TGTGTGAGTGCCCAT----GAGTGTGTC------TGGGTAATTT------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       391656 32 -   2086007 TGTGT--GTGCCCGT----GAGTGTGTC------TGAGTAACTT------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       452529 34 +   3831555 TGTGTGAGTGCCCAT----GAGTGTGTC------TGAGTAACTT------
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56151680 42 + 145441459 TATGTGAGTGACCATGGCAGAGAATGTT------TGAATGTTTGAGTA--
i mm10.chr7                 C 0 I 6
s canFam3.chr3               60052384 40 -  91889043 tgtgtgagtagc--t----gggtgtatctgtttatgagtaattatg----
i canFam3.chr3              I 2 C 0
s dasNov3.JH562051             436704 39 +    563711 tgtatgtgtgcatgg----gggagtttt------tgtgtg-tttatcatg
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13524452 555 +  16154928 I
e otoGar3.GL873689             474294  0 +   3845361 C
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=260043.000000
s hg38.chr15_KI270851v1_alt    203139 34 +    263054 AGTGTGAGTGTGAGGATGCATATGAGGGTGTGAG
s panTro5.chr15               9590367 34 +  83230942 GGTTTGAGTGTGAGGATGCATATGAGGGTGTGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124032 34 -  99763055 GGTTTGAGTGTGAGGATGCATATGAGGGTGTGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       167968 34 -    281578 GATGTGAGTGTGAGGATGCATATGAGGGTGTGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164337558 34 - 169600520 GGTGTGAGTGTGAGGATGCGTATGAGGGTGTGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658524 34 - 171882078 GGTGTGAGTGTGAGGATGCGTATGAGGGTGTGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       513327 34 +   2379783 GGTGTGAGTGTGAGGATGCGTATGAGGGTGTGAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470067 34 +   4116138 GGTGTGAGTGTGAGGATGCATATGAGGGTGTGAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53902362 34 +  58131712 GGTGTGAGTGTGAGGATGCATATGAGGGTGTGAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       522820 34 -   3636681 GGTGTGAGTATGAGGATGCATATGAGGGTGTGAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502421 34 -   4457520 GGTGTGAGTGTGAGGATGCATATGAGGGTGCGAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154533104 14 - 158406734 GCTGTGGGTGTGAG--------------------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             365542 14 -   2682657 GCTGTGGGTGTGTG--------------------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       391688 34 -   2086007 GCTGTGGGTGTGAGGATGCGTATGGCGGTGTGAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       452563 34 +   3831555 GCTGTGGGTGTGAGGATGCATATGACGGTGTGAG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13525007 34 +  16154928 AGTGTGAGTGTGAGAATGCATATGAGGGTGTGAG
i proCoq1.NW_012148396v1    I 555 I 389
s mm10.chr7                  56151728 32 + 145441459 GATTTAGTCTTTAG--TATATGTGAATGTATGAG
i mm10.chr7                 I 6 C 0
s canFam3.chr3               60052424 34 -  91889043 agtgattgtgtgtgaatttatcagtgactatgag
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             436743 23 +    563711 tgtgtgaatgtgtgagttt---------tgtg--
i dasNov3.JH562051          C 0 C 0
e otoGar3.GL873689             474294  0 +   3845361 C
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=226606.000000
s hg38.chr15_KI270851v1_alt    203173 51 +    263054 AGTGAGTG-TGTGTGTGTGTGAGCGC-ATGTGAGTGTG----CTGAAGGAAGGCAGG
s panTro5.chr15               9590401 43 +  83230942 A---------GTGTGTGTGTGAGCGC-ATGTGAGTGTG----CTGAAGGAAGGCAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124066 43 -  99763055 A---------GTGTGTGTGTGAGCGC-ATGTGAGTGTG----CTGAAGGAAGGCAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168002 47 -    281578 AGTGA-----GTGTGTGTGTGAGCCC-ATGTGAGTGTG----CTGAAGGAAGGCAGG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164337592 41 - 169600520 A-----------GTGTGTGTGAGCGC-ATACGAGTGTG----CTGAAGGAAGGCAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658558 41 - 171882078 A-----------GTGTGTGTGAGCGC-ATATGAGTGTG----CTGAAGGAAGGCAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       513361 41 +   2379783 A-----------GTGTGTGTGAGCGC-ATACGAGTGTG----CTGAAGGAAGGCAGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470101 49 +   4116138 AGTGAGT---GTGTGTGTTTGAGCGC-ATACGAGTGTG----CTGAAGGAAGGCAGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53902396 49 +  58131712 AGTGAGT---GTGTGTGTTTGAGCGC-ATACGAGTGTG----CTGAAGGAAGGCAGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       522854 41 -   3636681 A-----------GTGTGTGTGAGCGC-ATACGAGTGTG----CTGAAGGAAGGCAGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502455 49 -   4457520 AGTGAGT---GTGTGTGTTTGAGCAC-ATGCGAGTGTG----CTGAAGGAAGGCAGG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154533118 25 - 158406734 ----------------------------AGTGAGTGTG----CTGAAGGAAGGCCGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             365556 33 -   2682657 -------------------TGAGTGC-ACGTGCATGTG----CTGAAGGAAGGCGGG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       391722 41 -   2086007 A-----------GTGTGTGTGAGTGC-ACGTGCGTGTG----TTGAAGGAAGGCGGG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       452597 37 +   3831555 T-----------GCG----TGAGTGC-ACGTGAGTGTG----CTGAAGGAAGGTGGG
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56151760 33 + 145441459 -----------AGTGAATGTTAGTGT-GTGAGCCTATG----TCTTATG--------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60052458 42 -  91889043 -------aatgagtgtgtgtgattgt-ggtagggtgtg---actgtatgaaag----
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             436766 46 +    563711 -----------agtgattttgtgtgtgAAGAGAGTGTGTTTTCTGAAAGAAAGTGGG
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13525041 389 +  16154928 I
e otoGar3.GL873689             474294  0 +   3845361 C
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=788621.000000
s hg38.chr15_KI270851v1_alt    203224  96 +    263054 TGTCCTCATAAGCTTGGATAGCT-GAGGGCAGGGT-------------GGGGGAGG------TGGGAGG---G-----------AGAGCAGGTCCTGTGGGGCTGTGGGCGGGGTCCCTCA--GGGGG--CCCA
s panTro5.chr15               9590444  93 +  83230942 TGTCCTCATAAGCTTGGATAGCC-GAGGGCAGGGT-------------GGGGGAGG------TGGGAGG---G-----------AGAGCAGGTCCTGTGGGGCTGTGGGCGGGGTCTCTC-----GGG--CCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124109  93 -  99763055 TGTCCTCATAAGCTTGGATAGCC-GAGGGCAGGGT-------------GGGGGAGG------TGGGAGG---G-----------AGAGCAGGTCCTGTGGGGCTGTGGGCGGGGTCTCTC-----GGG--CCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168049  96 -    281578 TGTCCTCATAAGCTTGGATAGCT-GAGGGCAGGGC-------------GGGGGAGG------TGGGAGGC--G-----------AGAGCAGGTCCTGTGGGGCTGTGGGTGGGGTCCCTC---GGGGG--CCCA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164337633  97 - 169600520 TATCCTCATAGGCTTGGATAGCT-GAGGGCAGGGT--------------GGGGAGG------TGGGAGGC--G-----------AGAGCAGGTCCTGTGGGGCTGTGGGTGGGGTCCCTCAG-GAGGG--CCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658599  97 - 171882078 TATCCTCATAGGCTTGGATAGCT-GAGGGCAGGGT--------------GGGGAGG------TGGGAGGC--G-----------AGAGCAGGTCCTGTGGGGCTGTGGGTGGGGTCCCTCAG-GAGGG--CCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       513402  97 +   2379783 TATCCTCATAGGCTTGGATAGCT-GAGGGCAGGGT--------------GGGGAGG------TGGGAGGC--G-----------AGAGCATGTCCTGTGGGGCTGTGGGTGGGGTCCCTCAG-GAGGG--CCCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470150  97 +   4116138 TATCCTCATAGGCTTGGATAGCT-GAGGGCAGGCT--------------GGGGAGG------TGGGAGGC--G-----------AGAGCAGGTCCTGTGGGGCTGTGGGTGGGGTCCCTCAG-GAGGG--CCCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53902445  97 +  58131712 TATCCTCATAGGCCTGGATAGCT-GAGGGCAGGGT--------------GGGGAGG------TGGGAGGC--G-----------AGAGCAGGTCCTGTGGGGCTGTGGGTGGGGTCCCTCAG-GAGGG--CCCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       522895  97 -   3636681 TATCCTCACAGGCTTGGATAGCT-GAGGGCAGGGT--------------GGGGAGG------TGGGAGGC--G-----------AGAGCAGGTCCTGTGGGGCTGTGGGTGGGGTCCCTCAG-GAGGG--CCCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502504  96 -   4457520 TATCCTCATAGGCTTGGATAGCT-GAGGGCAGG-T--------------GGGGAGG------TGGGAGGC--G-----------AGAGCAGATCCTGTGGAGCTGTGGGTGGGGTCCCTCAG-GAGGG--CCCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154533143  98 - 158406734 TGTCCTCGTAAGCTTGGATGGCT-GAGGGCAGGGT-------------GAGGGAGG------TGTGAGGC--G-----------AGAGCAGATCCTGTGGGGCTGTGGGAGGGGTTCCTCAG-GAGAG--CCCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             365589  98 -   2682657 TGTCTTCGTAAGCTTGGATGGCT-GAAGGTAGGGT-------------CGGGGAGG------TGTGAGGT--G-----------AGAGCAGATCCTGTGGGGCTGTGGGAGGGGCTCCTCAG-GAGGG--CTCA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       391763  98 -   2086007 TGTCCTCGTAAGCCTGGATGGCT-GACGGCAGGGT-------------GGGGGAGG------TGTGAGGC--G-----------AGGGCAGGTCCTGTGGGGCTGTGGGAGGGGTTCCTCAG-GAGGG--CCCA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       452634  98 +   3831555 TGTCCTCGTAAGCTTGGGTGGCT-GAGGGCAGGGT-------------GGGGGAGG------TGGGAGGC--G-----------AGAGCAGATCCTGTGGGGCTGTGGGAGGGGTTCCTCAG-GTGGG--CTCA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             474294  96 +   3845361 TGTCCCTGTAACCCTGGTAAGCTGGAGGACAGTGG--------------GGGAAAG------GGGGAGG---G-----------CAGGCTGGTTGTGTGGGGTGGGGAGAGGGG---CTGGG-GAAGGGTCCCA
i otoGar3.GL873689          C 0 I 20
s mm10.chr7                  56151793  99 + 145441459 --------TGAGCTTGGAGGGTTGGAAGGCAGCAC--------------GGGGCAG------AGGAAGGT--GCTGCTATTGCTGCAGTAGGATCTGGGAAGGTCCCAGCAGAGTCCTGTTG-GAA----CTCA
i mm10.chr7                 C 0 I 7
s canFam3.chr3               60052500 101 -  91889043 ----ttaatgtgtttgtgtgACT-GAGCACAGGCATTTACATGTGTCTGAAGGAGGTGCCCCTGGGAGCCTGG-----------AGAGCAGG------AAAGCTGAGCCCTGG------CAG-GTGGG--CC--
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             436812  90 +    563711 TCGGCTC-TAAGCCTGGTGAGCG-GGTGGCCGTTC---------------GGGCCT------TAGAAGGG--G-----------ATGGCTGG------AGGGTTTGAGGAAAAATCCTGTGGTGAGAT--CCCA
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13525041 389 +  16154928 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=566430.000000
s hg38.chr15_KI270851v1_alt    203320 62 +    263054 GCCTCCAAGCCTCAGCTTCCATTCAGGG-----AGTA---GTGGAGTCCTGG--AGCCAGGCGGAGCAGAGG
s panTro5.chr15               9590537 62 +  83230942 GCCTCCAAGCCTCAGCCTCCATTCAGGG-----AGTA---GTGGAGTCCTGG--AGCCAGGCGGAGCAGAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124202 62 -  99763055 GCCTCCAAGCCTCAGCCTCCATTCAGGG-----AGTA---GTGGAGTCCTGG--AGCCAGGCGGAGCAGAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168145 62 -    281578 GCCTCCAAGCCTCATCCTCCATTCAGGG-----AGTA---GTGGAGTCCTGG--AGCCAGGCGGAGCAGAGG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164337730 62 - 169600520 GCCTCCAAGCCTCAGCCTCTGTTCAGGG-----AGTA---GTGGAGTCCTGG--AGCCAGGGGGAGCAGAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658696 62 - 171882078 GCCTCCAAGCCTCAGCCTCCGTTCAGGG-----AGTA---GTGGAGTCCTGG--AGCCAGGGGGAGCAGAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       513499 62 +   2379783 GCCTCCAAGCCTCAGCCTCCGTTCAGGG-----AGTA---GTGGAGTCCTGG--AGCCAGGGGGAGCAGAGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470247 62 +   4116138 GCCTCCAAGCCTCAGCCTCCGTTCAGGG-----AGTA---GTGGAGTCCTGG--AGCCAGGCAGAGCAGAGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53902542 62 +  58131712 GCTTCCAAGCCTCAGCCTCCGTTCAGGG-----AGTA---GTGGAGTCCTGG--AACCAGGCGGAGCAGAGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       522992 62 -   3636681 GCCTCCAAGCCTCAGCCTCCGTTCAGGG-----AGTA---GTGGAGTCCTGG--AGCCAGGCGGAGCAGAGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502600 62 -   4457520 GCCTCAAAGCCTCAGCCTCCATTAAGGG-----AGTA---GTGGAGTCCTGG--AGCCAGGCGGAGCAGAGG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154533241 62 - 158406734 GCCTCCGAGCCTCAGCCTCCACTCAGGG-----AGTA---ATGGAGGCCTGG--AGCCAGGCAGAGCAGAAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             365687 62 -   2682657 GCCTCCGAGCCTCAGCCTCTGCTCAGGG-----AGGA---ATGGAGGCCTGC--AGCCAGGTAGAGCAGAGC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       391861 62 -   2086007 GCCTCCGAGCCTCAGCCTCTGCTCAGGG-----AGGA---ATGGAGGCCTGC--AGTCAGGCAGAGCAGAGG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       452732 62 +   3831555 GCCTCTGAGCCTCAGCCTCCACTTAGGG-----AGTA---ATGGAGGCCTGG--AGCCAGGCAGAGCAGAGG
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56151899 61 + 145441459 GGCTACATGTCCTAGCTTGAG---ACGG-----AATA---GACATGTCCTGGGAAGCGAGAAGGAACAGAAA
i mm10.chr7                 I 7 I 161
s canFam3.chr3               60052601 68 -  91889043 TCTGCCAGGAAAGAGTGGAAACCCAGGGTGACCATGA---GCAGAGACCTGG-AAGCCAGGAGAAGCAGAGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             436902 61 +    563711 GCCTC-AGATCTCAGCAAC-----AGGG-----AGGACCCCTGGGGGGCTGGGAAGCCAGCAGGAGCCAGTA
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13525041 389 +  16154928 I
e otoGar3.GL873689             474390 20 +   3845361 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=15375.000000
s hg38.chr15_KI270851v1_alt    203382 2 +    263054 TG-
s panTro5.chr15               9590599 2 +  83230942 TG-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124264 2 -  99763055 TG-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168207 2 -    281578 TG-
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164337792 2 - 169600520 TG-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658758 2 - 171882078 TG-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       513561 2 +   2379783 TG-
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470309 2 +   4116138 TG-
i cerAty1.NW_012001462v1    C 0 I 27
s chlSab2.chr26              53902604 2 +  58131712 TG-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       523054 2 -   3636681 TG-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502662 2 -   4457520 TG-
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154533303 2 - 158406734 TG-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             365749 2 -   2682657 TG-
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       391923 2 -   2086007 TG-
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       452794 2 +   3831555 TG-
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60052669 1 -  91889043 -G-
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             436963 2 +    563711 -GA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56151960 161 + 145441459 I
e proCoq1.NW_012148396v1     13525041 389 +  16154928 I
e otoGar3.GL873689             474390 20 +   3845361 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=62575.000000
s hg38.chr15_KI270851v1_alt    203384 9 +    263054 GGCCCACTG
s panTro5.chr15               9590601 9 +  83230942 GGCCCACTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124266 9 -  99763055 GGCCCACTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168209 9 -    281578 GGCCCACTG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164337794 9 - 169600520 GGCCCACTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658760 9 - 171882078 GGCCCACTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       513563 9 +   2379783 GGCCCACTT
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53902606 9 +  58131712 GGCCCACTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       523056 9 -   3636681 GGCCCACTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502664 9 -   4457520 GACCCACTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154533305 9 - 158406734 GACCCACTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             365751 9 -   2682657 GACCCACTG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       391925 9 -   2086007 GACCCACTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       452796 9 +   3831555 GACCCACTT
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60052670 9 -  91889043 GGTCAGTTG
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             436965 5 +    563711 GGCCT----
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56151960 161 + 145441459 I
e proCoq1.NW_012148396v1     13525041 389 +  16154928 I
e otoGar3.GL873689             474390 20 +   3845361 I
e nomLeu3.chr6               71027480 6354 + 121039945 M
e cerAty1.NW_012001462v1       470311 27 +   4116138 I

a score=714614.000000
s hg38.chr15_KI270851v1_alt    203393 121 +    263054 GTGCCAGAATCCAGTGGTGTAAACCTAGTGAAAAAC---------TCATTTTGTTAATGCAGATGCATTAAACTTGGATTGGAAACTGTCTCTACTAAAATTACAAAAAGAGTATTTAAGTGGTGCAGAT
s panTro5.chr15               9590610 121 +  83230942 GTGCCAGAATCCAATGGTGTAAACCTAGTGAAAAAT---------TCATTTTGTTAAAGCAGATGTATTAAACTTGGATTGGAAACTGTCTCTACTAAAATTACAAAAAAAGTATTTAAGTGGTGCAGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124275 121 -  99763055 GTGCCAGAATCCAATGGTGTAAACCTAGTGAAAAAT---------TCATTTTGTTAATGCAGATGTATTAAACTTGGATTGGAAACTGTCTCTACTAAAATTACAAAAAAAGTATTTAAGTGGTGCAGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168218 121 -    281578 GTGCCAGAATCCAGTGGTGTAAACCTAGTGAAAAAC---------TCATTTTGTTAATGCAGATGTATTAAACTTGGATTGGAAACTGTCTCTACTAAAAATACAAAAAAAAAATTTAAGTGGTGCAGAT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164337803  92 - 169600520 GTGCCACAATCCAATGGTGTAAACCTAGTGAAAACC-------TTTCCTTTTGTTAATGCAGATATAGTAAAGTTAGATTGGAAAC--------------TTAC-----------------GGTGCAGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658769  92 - 171882078 GTGCCACAATCCAATGGTGTAAACCTAGTGAAAACC-------TTTCCTTTTGTTAATGCAGATATAGTAAAGTTAGATTGGAAAC--------------TTAC-----------------GGTGCAGAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       513572  93 +   2379783 GTGCCACAATCCAATGGTGTAAACCTAGTGAAAACC-------TTTCCTTTTGTTAATGCAGATATAGTAAAGTTAGATTGGAAACT-------------TTAC-----------------GGTGCAGAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470338  92 +   4116138 GTGCCACAGTCCAATGGTGTAAACCTAGTGAAAACC-------TTTCCTTCTGTTAATGCAGATATAGTAAAGTTAGATTGGAAAC--------------TTAC-----------------GGTGCAGAT
i cerAty1.NW_012001462v1    I 27 C 0
s chlSab2.chr26              53902615  92 +  58131712 GTGCCACAATCCAATGGTGTAAACCTAGTGAAAACC-------TTTCCTTTTCTTAATGCAGATGTAGTAAAGTTAGATTGGAAAC--------------TTAC-----------------AGTGCAGAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       523065  92 -   3636681 GTGCCACAATCCAATGGTGTAAACCTAGTGAAAACC-------TTTCCTTTTGTTAATGCAGATATAGTAAAGTTAGATTGGAAAC--------------TTAC-----------------GGTGCAGAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502673  87 -   4457520 GTGGCAGAATCCAATGGTGTACACCTAGTGAAAACC-------TTTCCTTTTGTTAATGCAGATGT-----AGTTAGATTGGAAAC--------------TTAT-----------------GGTGCAGAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154533314  92 - 158406734 GTGTCAGAATCCAATGTTGTAAACCTAGTGAAAACT-------TCCCATTTTGTTAATGCACATGTATTAAACTTGGATTGGGAAC--------------TTAC-----------------AGTGCAGAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             365760  92 -   2682657 GTGTCAGAATCCAATGTTGTAAACCTAGTGAAAACT-------TACCATTTTGTTAATGCAGATGTGTTAAACTTGGCTTGGAAGC--------------TTAT-----------------GGTGCAGAT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       391934  92 -   2086007 GTGTCAGAATCCAGTGTTGTAAACCTAGTGAAAACT-------TCCCATTTTGTTAATGCAGATGTGTTAAACTTGGATTGGAAAC--------------TTAC-----------------GGTGCAGAT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       452805  92 +   3831555 GTGTCAGAATCCAATGTTGTAAACCTAGTGAAAACT-------TCCCATTTTGTTAATACAGATGTATTAAACTTGGATTGGAAAC--------------TTAC-----------------GGTGCAGAT
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60052679  92 -  91889043 -------CATCAAATTGGATAAGCCTCACAAAAACCTCCCTTGTCTTGTTCTATTAATGCAGACTTCTTAAACTTGGATTGGAAAT--------------GTAC-----------------GGTGCAGAT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             436970  76 +    563711 ----TGGATTCCAG----GCAGGC------AGAATC---------TCATCCCATTGGTGTAGACGTCGTGAATTTGGGCTGGAAAT--------------TCAC-----------------GGTGCAAGT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56151960 161 + 145441459 I
e proCoq1.NW_012148396v1     13525041 389 +  16154928 I
e otoGar3.GL873689             474390  20 +   3845361 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=299364.000000
s hg38.chr15_KI270851v1_alt    203514 42 +    263054 TAAATATAACCAAGATTGT-GGAGA-TATTTAAA--AC----ACGAAA-TT
s panTro5.chr15               9590731 42 +  83230942 TAAATATAACCAAGATTGT-GGAGA-TATTTAAA--AC----ACGAAA-TT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124396 42 -  99763055 TAAATATAAGCAAGATTGT-GGAGA-TATTTAAA--AC----ACGAAA-TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168339 42 -    281578 TAAATATAAGCAAGATTGT-GGAGA-TATTTAAA--AC----ACGAAA-TT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164337895 40 - 169600520 TAAATATAAGCAAGATTGT-GGAGA-TATTTAAA--------ACGAAA-TG
i rheMac8.chr7              C 0 I 2
s macFas5.chr7              165658861 40 - 171882078 TAAATATAAGCAAGATTGT-GGAGA-TATTTAAA--------ACGAAA-TG
i macFas5.chr7              C 0 I 2
s macNem1.NW_012011934v1       513665 40 +   2379783 TAAATATAAGCAAGATTGT-GGAGA-TATTTAAA--------ACGAAA-TG
i macNem1.NW_012011934v1    C 0 I 2
s cerAty1.NW_012001462v1       470430 40 +   4116138 TGAATATAAGCAAGATTGT-GGAGA-TATTTAAA--------ACGAAA-TG
i cerAty1.NW_012001462v1    C 0 I 2
s chlSab2.chr26              53902707 40 +  58131712 TAAATATAAGCAAGATTGT-GGAAA-TATTTAAA--------ACGAAA-TG
i chlSab2.chr26             C 0 I 2
s manLeu1.NW_012102332v1       523157 40 -   3636681 TAAATATAAGCAAGATTGT-GGAGA-TATTTAAA--------ACGAAA-TG
i manLeu1.NW_012102332v1    C 0 I 1
s colAng1.NW_012115278v1       502760 35 -   4457520 TAAATATAAGCAAGATTGT-GGAGA-TACTT-------------GAAA-TG
i colAng1.NW_012115278v1    C 0 I 2
s calJac3.chr6              154533406 43 - 158406734 TAAATATAAGCAAGATCAT-GGAGG-TATTTAAA--AC----AGGAGATTT
i calJac3.chr6              C 0 I 2
s saiBol1.JH378292             365852 42 -   2682657 TAAATGTAAGCAAGATCAC-GGAGG-TATTTAAA--AC----AGGAGA-TT
i saiBol1.JH378292          C 0 I 2
s cebCap1.NW_016107707v1       392026 43 -   2086007 TAAATGTAAGCAAGATCAT-GGAGG-TATTTAAA--AC----AGGAGATTT
i cebCap1.NW_016107707v1    C 0 I 2
s aotNan1.NW_018503298v1       452897 43 +   3831555 AAAATGTAAGCAAGATCAT-GGAGG-TATTTAAA--AC----AGGAGATTT
i aotNan1.NW_018503298v1    C 0 I 2
s mm10.chr7                  56152121 39 + 145441459 CAGATCAAAATGAGATCAT-AGGGA-CATTTGAG--GC----ACATG----
i mm10.chr7                 I 161 C 0
s canFam3.chr3               60052771 47 -  91889043 GAAATGTAAACAAGATCATGGGAGA-TATTTAAA--ACACATATGAGG-TT
i canFam3.chr3              C 0 I 3
s dasNov3.JH562051             437046 43 +    563711 TTAATACCAACAAGACTTT-GGGGAGTGTTTAAATCAC----ATGAGT---
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13525041 389 +  16154928 I
e otoGar3.GL873689             474390 20 +   3845361 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=594519.000000
s hg38.chr15_KI270851v1_alt    203556 58 +    263054 ------AAAAATATAATAGATGCACTGTTGCAAATTA-C---TATTTGAATTATAGATCATTTTCCTA
s panTro5.chr15               9590773 58 +  83230942 ------AAAAATATAATAGATGCACTGTTGCAAATTA-C---TATTTGAATTATAGATCATTTTCCTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124438 59 -  99763055 ------AAAAATATAATAGATGCACTGTTGCAAAGTA-C--TTATTTGAATTATAGATGATTTTCCTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168381 61 -    281578 ------AAAAATATAATAGATGCACTGTTGCAAAGTA-CTGTTATTTGAATTATAGATGATTTTCCTA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164337937 62 - 169600520 ------AAAAATACAATAGATGCACTCTTGCAAATTAACTGCTATTTGAATTATAGATCATTTTCCTG
i rheMac8.chr7              I 2 C 0
s macFas5.chr7              165658903 62 - 171882078 ------AAAAATACAATAGATGCACTCTTGCAAATTAACTGCTATTTGAATTATAGATCATTTTCCTG
i macFas5.chr7              I 2 C 0
s macNem1.NW_012011934v1       513707 62 +   2379783 ------AAAAATACAATAGATGCACTCTTGCAAATTAACTGCTATTTGAATTATAGATCATTTTCCTG
i macNem1.NW_012011934v1    I 2 C 0
s cerAty1.NW_012001462v1       470472 62 +   4116138 ------AAAAATACAATAGATGCACTCTTGCAAATTAACTGCTATTTGAATTATAGATCATTTTCCTG
i cerAty1.NW_012001462v1    I 2 C 0
s chlSab2.chr26              53902749 62 +  58131712 ------AAAAATACAATAGATGCACTCTTGCACATTATCTGCTATTTGAATTATAGATCATTTTCCTG
i chlSab2.chr26             I 2 C 0
s manLeu1.NW_012102332v1       523198 62 -   3636681 ------AAAAATACAATAGATGCACTCTTGCAAATTAACTGCTATTTGAATTATAGATCATTTTCCTG
i manLeu1.NW_012102332v1    I 1 C 0
s colAng1.NW_012115278v1       502797 61 -   4457520 ------AAAAATACAATAGATGCACTCTTGCAAATTA-CTGCTGTTTGAATTATAGATCATTTTCCTA
i colAng1.NW_012115278v1    I 2 C 0
s calJac3.chr6              154533451 61 - 158406734 ------AAAAATGCAATAGATGTACTCTTGCGAATTA-CTGCTATTTGGATTGTAGATAACTTTCCTA
i calJac3.chr6              I 2 C 0
s saiBol1.JH378292             365896 61 -   2682657 ------AAATATATAATAGATGTAGTGTTGCAAATTA-CTGCTATTTGGATTATAGATAATTTTCCTA
i saiBol1.JH378292          I 2 C 0
s cebCap1.NW_016107707v1       392071 61 -   2086007 ------AAAAATATAATAGATGTACTGTTGCAAATTA-CTGCTATTTGGATTATAGATAATTTTCCTA
i cebCap1.NW_016107707v1    I 2 C 0
s aotNan1.NW_018503298v1       452942 61 +   3831555 ------AAAAATATAATAGATGTACTGTTGCAAATTA-CTGCTATTTGGATTACAGATAATTTTCCTG
i aotNan1.NW_018503298v1    I 2 C 0
s proCoq1.NW_012148396v1     13525430 61 +  16154928 ------AAAAATATAATAGATGCACTGTTGCAAATTA-CTGCTATTTGAATTATAGATCATTTTCCTA
i proCoq1.NW_012148396v1    I 389 I 213
s mm10.chr7                  56152160 41 + 145441459 -----------------AAGCATATTCTT---AATTA-CTGATGTTAGAATTATAGATTTTA------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60052821 58 -  91889043 ------AAAAATATACAAGATTCACTCTTAATAATTA----CTATTTGAATATTGAGTCATTTTCTTA
i canFam3.chr3              I 3 C 0
s dasNov3.JH562051             437089 65 +    563711 TATTTTTTAAATATAAAAGA-ACACTCTCACAGATAA-CTGCTATTTGAGTTATAAGTCATTTTTTG-
i dasNov3.JH562051          C 0 C 0
e otoGar3.GL873689             474390 20 +   3845361 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=671362.000000
s hg38.chr15_KI270851v1_alt    203614 76 +    263054 TTGCCTAGAAACAATGCATAGCTAAAATTCCCTAACTACTTT---TACGACACATACTTAGAAGGTTTTAAAAATgcct
s panTro5.chr15               9590831 76 +  83230942 TTGCCTAGAAACAATACATAGCTAAAATTCCCTAACTACTTT---TACTACACATACTTAGAAGGTTTTAAAAATgtct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124497 76 -  99763055 TTGCCTAGAAACAATGCATAGCTAAAATTCCCTAACTACTTT---CACTACACATACTTAGAAGGTTTAAAAAATgcct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168442 76 -    281578 TTGCCTAGAAACAATGCATAGCTAAAATTCCCTAATTACTTT---TACTACACATACTTACAAGGTTTTAAAAATAcct
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164337999 76 - 169600520 TTGCCTAGAAACAATACATAGCTAAAATTCCCTAACTACTTT---TACTACACATACTTAGAAGGTTTTAAAAATgcct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165658965 76 - 171882078 TTGCCTAGAAACAATACATAGCTAAAATTCCCTAACTACTTT---TACTACACATACTTAGAAGGTTTTAAAAATgcct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       513769 76 +   2379783 TTGCCTAGAAACAATACACAGCTGAAATTCCCTAACTACTTT---TACTACACATACTTAGAAGGTTTTAAAAATgcct
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470534 74 +   4116138 TTGCCTAGAAACA--ACATAGCTAAAGTTCCCTAACTACTTT---TACTACACATACGTAGAAGGTTTTAAAAATgcct
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53902811 76 +  58131712 TTGCCTAGGAACAATACATAGCTAAAATTCCCTAACTACTTT---TACTACACATACTTAGAAGGTTTTAAAAatgcct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       523260 76 -   3636681 TTGCCTAGAAACGATACATAGCTAAAATTCCCTAACTACTTT---TACTACACATACTTAGAAGGTTTTAAAAATgcct
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502858 76 -   4457520 TTGCCTAGAAACAATACATAGCTAAAATTCCCTAACTACTTT---TACTACACATACTTAGAAGGTTTTAAAAATgcct
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154533512 74 - 158406734 TTGCCTAGAAACAACACATAGGTAGAACTCCTTAACTAGTTT---TAGTACACAG--TTAGAAGATTTTTGAAATgcct
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             365957 74 -   2682657 TTGCCTAGAAACGATACATAGGTAAAATTCTTTAACTAGTTT---TAGTACACAG--TTAGAAGGTTTTAGAAATgcct
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       392132 74 -   2086007 TTGCCTAGAAATAACACATAGGTAAAATTCTTTAACTAGTTT---TAGTACACAG--TTAGAAGGTTCTAGAAATgcgt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       453003 73 +   3831555 TTGCCTAGAAACAATACATAGGTAAAATTCCTTAACTAGTTT---TAGTACGGAG--TTAGAAGGTTTTAGAAATGCC-
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56152201 68 + 145441459 TTTCCTTGAAAC--TGTATAAATAGATTAACTAAATTGATTT---CCATTCAG----TTCAAAGGTT--AAAAATAAAT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60052879 70 -  91889043 TTGTCTAGAAATAATAAGTACCTGAAATGCTTTAACTGGTTT---GAGT-----TACTATAAAGGTTTTAAAAGTGT-T
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             437154 78 +    563711 TTGCCTAGAAACATTAAAAAGATGAAATTCA-TAACTAGTTTGGGTACTACATGtattttaaagatatttaaaatgttt
i dasNov3.JH562051          C 0 I 83
e proCoq1.NW_012148396v1     13525491 213 +  16154928 I
e otoGar3.GL873689             474390 20 +   3845361 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=26645.000000
s hg38.chr15_KI270851v1_alt    203690 3 +    263054 gta
s panTro5.chr15               9590907 3 +  83230942 gta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124573 3 -  99763055 gta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168518 3 -    281578 gta
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164338075 3 - 169600520 gta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659041 3 - 171882078 gta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       513845 3 +   2379783 gta
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470608 3 +   4116138 gta
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53902887 3 +  58131712 gta
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       523336 3 -   3636681 gta
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502934 3 -   4457520 gta
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154533586 3 - 158406734 atg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             366031 3 -   2682657 gta
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       392206 3 -   2086007 ata
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       453076 2 +   3831555 -ta
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60052949 3 -  91889043 GTA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56152269 0 + 145441459 C
e proCoq1.NW_012148396v1     13525491 213 +  16154928 I
e dasNov3.JH562051             437232 83 +    563711 I
e otoGar3.GL873689             474390 20 +   3845361 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=741359.000000
s hg38.chr15_KI270851v1_alt    203693 119 +    263054 gtcccagctattcggcagggcaaggcaggagaatcacttgagcccaggag-ttttagaccagcctgggcaacacagtgagggcccttctct----aaaaaaaacaaaaaaaAAAGAAAACTTCG
s panTro5.chr15               9590910 119 +  83230942 gtcccagctattcggcagggcaaggcaggagaatcacttgagccccggag-ttttagaccagcctgggcaacataatgagggcccatctct----aaaaaaaaacaaaaaaAAAGAAAAATTCG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124576 110 -  99763055 gtcccagctatttggcagggcaaggcaggagaatcacttgaacccaggag-ttttagaccagcctgggcaacatagtgagagcccttctct----a---------aaaaaaaaagaaaaaTTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168521 112 -    281578 gtcccagctatttggcagggcaaggcaggagaatcacttgaacctaggag-ttttagaccagcctgggcaacacagtgagagcccttctct----aaa-------aaaaaaaaagaaaAATTCA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164338078 113 - 169600520 gtcccagctattcaggagggcgaggcaggaggatcactagagcccaggag-ttttagaccaacctgggcaacatagtgagagcccatctct----aaaa------aaaaaaaaagaaAAATTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659044 113 - 171882078 gtcccagctattcaggagggcgaggcaggaggatcactagagcccaagag-ttttagaccaacctgggcaacatagtgagagcccatctct----aaaa------aaaaaaaaagaaAAATTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       513848 117 +   2379783 gtcccagctattcaggagggcgaggcaggaggatcactagagcccaggag-ttttagaccaacctgggcaacatagtgagagaccatctctaaaaaaaa------aaaaaaaaAGAAAAATTCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470611 114 +   4116138 gtcccagctattcgggagggcgaggcaggaggatcactagagcccaggag-ttttagaccaacctgggcaacatagtgagagcccatctct---aaaaa------aaaaaaaaagaAAAATTCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53902890 115 +  58131712 gtcccagctattcgggagggcgaggcaggaggatcactagagcccaggag-ttttagaccaacctgggcaacatagtgagagcccatctct--aaaaaa------aaaaaaaaagaaaaaTTCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       523339 113 -   3636681 gtcccagctattcgggagggcgaggcaggaggatcactagagcccaggag-ttttagaccaacctgggcaacatagtgagagcccatctct----aaaa------aaaaaaaaagaaAAATTCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       502937 113 -   4457520 gtcccagctattccggagggcgaggcaggaggatcactagagcccaggag-ttttagatcaacctgggcaacgtagtgagagcccatctct----aaaa------acaaaaaaagaaAAATTCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154533589 109 - 158406734 gtcccagctacttgggagcctgaggcaagagggtcacttgaacccaggag-ttttagaccagcctgggcaacatagtgagaccccatcgct--------------aaaaaatgaaaaaTTCTGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             366034 109 -   2682657 gtcccagctacttgggagccagaggaaaga-gatcacttgagcccaggaatttttagaccagcctgggcaacatagagagaccccattgct--------------aaaaaaagaaaaaaTCTGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       392209 109 -   2086007 gtcccagctacttgggagcccaaggaaagaggatcacttgagcccaggag-ttttagaccagcctaggcaacatagtgacaccccattgct--------------aaaaaaagaaaaaTTCTGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       453078 109 +   3831555 gtcccagctacttgggaacctgaggcaagaggatcacttgagcccaggag-ttttagaccaacctgggcaatatagtgagaccccgtcact--------------aaaaaaagaaaaaTTCTGT
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56152269   5 + 145441459 ------GCTGT-----------------------------------------------------------------------------------------------------------------
i mm10.chr7                 C 0 C 0
e proCoq1.NW_012148396v1     13525491 213 +  16154928 I
e dasNov3.JH562051             437232  83 +    563711 I
e canFam3.chr3               60052952   0 -  91889043 C
e otoGar3.GL873689             474390  20 +   3845361 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=13600.000000
s hg38.chr15_KI270851v1_alt    203812 1 +    263054 G
s panTro5.chr15               9591029 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124686 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168633 1 -    281578 G
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164338191 1 - 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659157 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       513965 1 +   2379783 G
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470725 1 +   4116138 G
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903005 1 +  58131712 G
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       523452 1 -   3636681 G
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503050 1 -   4457520 G
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154533698 1 - 158406734 G
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             366143 1 -   2682657 G
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       392318 1 -   2086007 G
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       453187 1 +   3831555 G
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13525704 1 +  16154928 G
i proCoq1.NW_012148396v1    I 213 C 0
s mm10.chr7                  56152274 1 + 145441459 G
i mm10.chr7                 C 0 C 0
e dasNov3.JH562051             437232 83 +    563711 I
e canFam3.chr3               60052952 0 -  91889043 C
e otoGar3.GL873689             474390 20 +   3845361 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=38284.000000
s hg38.chr15_KI270851v1_alt    203813 3 +    263054 AAA
s panTro5.chr15               9591030 3 +  83230942 AAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124687 3 -  99763055 AAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168634 3 -    281578 AAA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164338192 3 - 169600520 AAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659158 3 - 171882078 AAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       513966 3 +   2379783 AAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470726 3 +   4116138 AAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903006 3 +  58131712 AAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       523453 3 -   3636681 AAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503051 3 -   4457520 AAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154533699 3 - 158406734 AAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             366144 3 -   2682657 AAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       392319 3 -   2086007 AAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       453188 3 +   3831555 AAA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13525705 3 +  16154928 AAA
i proCoq1.NW_012148396v1    C 0 C 0
s mm10.chr7                  56152275 3 + 145441459 AAC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60052952 3 -  91889043 AAA
i canFam3.chr3              C 0 C 0
e dasNov3.JH562051             437232 83 +    563711 I
e otoGar3.GL873689             474390 20 +   3845361 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=452477.000000
s hg38.chr15_KI270851v1_alt    203816 52 +    263054 TGTTTCTTGAACTAACTTAAAAGCCGCCTTCCACT--TCTCACTTTGAATTAGT
s panTro5.chr15               9591033 52 +  83230942 TGTTTCTTGAACTAACTTAAAAGCCGCCTTCCACT--TCTCACTTTGAATTAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124690 52 -  99763055 TGTTTCTTGAACTAACTTAAAAGCCGCCTTCCACT--TCTCACTTTGAATTAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168637 52 -    281578 TGTTTCTTGAACTAACTTAAAAGCCGCCTTCCACT--TCTCACTTTGAATTAGT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164338195 48 - 169600520 TGTTTCTTGAACTAACTTAAAAGTCGTCTTCCACT--TCTCACTTTGAA----T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659161 48 - 171882078 TGTTTCTTGAACTAACTTAAAAGTCGTCTTCCACT--TCTCACTTTGAA----T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       513969 48 +   2379783 TGTTTCTTGAACTAACTTAAAAGTCCTCTTCCACT--TCTCACTTTGAA----T
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470729 48 +   4116138 TGTTTCTTGAACTAACTTAAAAGTCGTCTTCCACT--TCTCACTTTGAA----T
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903009 48 +  58131712 TGTTTCTTGAACTAACTTAAAAGTCGTCTTCCACT--TCTCACTTTGAA----T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       523456 48 -   3636681 TGTTTCTTGAACTAACTTAAAAGTCGTCTTCCACT--TCTCACTTTGAA----T
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503054 48 -   4457520 TGTTTCTTGAACTAACTTAAAAGTCGTCTTCCACT--TCTCACTTTGAA----T
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154533702 48 - 158406734 TGTTTCTTGGACTGACTTAAAAGCCTCCTTCCATT------CCTTTGAATTAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             366147 52 -   2682657 TGTTTCTTGAACTAACTTAAAAGCCTTCTTCTGTT--CCTCCCTTTGAATTAGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       392322 52 -   2086007 TGTTTTTCGAACTAACTTAAAAGCCTTCTTCCATT--CCTCACTTTGAATTAGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       453191 52 +   3831555 TGTTTCTTAAACTAACTTAAAAGCCTTCTTCCACT--CCTCACTTTGAATTAGT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13525708 52 +  16154928 TGTTCCTTGAGCTAACTTAAAAGCCTTCTCCCATT--CCTCACTTTGGATTAGT
i proCoq1.NW_012148396v1    C 0 I 126
s mm10.chr7                  56152278 39 + 145441459 TGTTTGTTGAGCTAAGTTAAAAACCTTCCTCTACT--GCTC-------------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60052955 41 -  91889043 TGCTCCTTGAGCTA-----------TTCTCCCACTGCTCTCACTTTGAGTGA--
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             437315 33 +    563711 TATTTTTTAAAGTAAAATAGTAGGTGAATTAGA---------------------
i dasNov3.JH562051          I 83 C 0
e otoGar3.GL873689             474390 20 +   3845361 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=430910.000000
s hg38.chr15_KI270851v1_alt    203868 50 +    263054 TTGAATTAA---TTTACAAACTGCAATATATTT--TAAAG-GAGCTTATTGTAGAA
s panTro5.chr15               9591085 50 +  83230942 TTGAATTAA---TTTACAAACTGCAATATATTT--TAAAG-GAGCTTATTGTAGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124742 51 -  99763055 TTGAATTAA---TTTACAAACTGCAATATATTTA-TAAAG-GAGCTTATTGTAGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168689 51 -    281578 TTGAATTAA---TTTACAAACTGCAATATATTTG-TAAAG-GAGCTTATTGTAGAA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164338243 51 - 169600520 TTGAATTAA---TTTACAAACTGCAATATATTTG-TAAAG-GAGCTTACTGTAGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659209 51 - 171882078 TTGAATTAA---TTTACAAACTGCAATATATTTG-TAAAG-GAGCTTACTGTAGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       514017 51 +   2379783 TTGAATTAA---TTTACAAACTGCAATATATTTG-TAAAG-GAGCTTACTGTAGAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470777 51 +   4116138 TTGAATTAA---TTTACAAACTGCAATATATTTG-TAAAG-GAGCTTACTGTAGAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903057 51 +  58131712 TTGAATTAA---TTTACAAACTGCAATATATTTG-TAAAG-GAGCTTACTGTAGAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       523504 51 -   3636681 TTGAATTAA---TTTACAAACTGCAATATATTTG-TAAAG-GAGCTTACTGTAGAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503102 51 -   4457520 TTGAATTAA---TTTACAAACTGCAATATATTTG-TAAAG-GAGCTTACTGTAGAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154533750 51 - 158406734 TTGAATTAA---TTTACAAAGTGCGACTTATTTG-TAAAG-GAGCTTATTGTAGAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             366199 51 -   2682657 TTGAATTAA---TTTACAAAGTGCAACATATTTG-TAAAG-GAGCTTATTGCAGAA
i saiBol1.JH378292          C 0 I 308
s cebCap1.NW_016107707v1       392374 51 -   2086007 TTGAATTAA---TTTACAAAGTGCAACATATTTG-TAAAG-GAGTTTATTGTAGAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       453243 51 +   3831555 TTGAATTAA---TTCACAAAGTGCAACATATTTG-TAAAG-GAGCTTATTGTAGAA
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56152317 36 + 145441459 -------------TCACATAGTCCT-----CTTG-GAAAT-TAGCCAATTGCCCAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60052996 37 -  91889043 ------------------CATGGTAAGATATTTG-TGAAGTTAGGTTGTTTTTGAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             437348 46 +    563711 ---AGTAAAGATTTTAC------CAATTAGTTTGATAAAT-AAGCTTCAACaataa
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13525760 126 +  16154928 I
e otoGar3.GL873689             474390 20 +   3845361 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=14036.000000
s hg38.chr15_KI270851v1_alt    203918  5 +    263054 AA--------TAA---
s panTro5.chr15               9591135  5 +  83230942 AA--------TAA---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124793 11 -  99763055 AA--ATAAAGTAA---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168740 11 -    281578 AA--ATAAAATAA---
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164338294 13 - 169600520 AATAAAATAGTAA---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659260 13 - 171882078 AATAAAATAGTAA---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       514068 13 +   2379783 AATAAAATAGTAA---
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470828 13 +   4116138 AATAAAATAATAA---
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903108 13 +  58131712 AATAAAATAATAA---
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       523555 13 -   3636681 AATAAAATAATAA---
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503153 13 -   4457520 AATAAAATAACAA---
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154533801  5 - 158406734 --------aataa---
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             366558  5 -   2682657 --------AATAA---
i saiBol1.JH378292          I 308 C 0
s cebCap1.NW_016107707v1       392425  5 -   2086007 --------AATAA---
i cebCap1.NW_016107707v1    C 0 I 338
s aotNan1.NW_018503298v1       453294  5 +   3831555 --------AATAA---
i aotNan1.NW_018503298v1    C 0 I 342
s mm10.chr7                  56152353  5 + 145441459 --------AATGA---
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60053033  5 -  91889043 --------AATAA---
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             437394  5 +    563711 -----------aattt
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13525760 126 +  16154928 I
e otoGar3.GL873689             474390 20 +   3845361 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=30840.000000
s hg38.chr15_KI270851v1_alt    203923 7 +    263054 GTTGA-TA
s panTro5.chr15               9591140 7 +  83230942 GTTGA-TA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124804 7 -  99763055 GTTGA-TA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168751 6 -    281578 GTTGA-T-
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164338307 7 - 169600520 GTTGA-TA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659273 7 - 171882078 GTTGA-TA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       514081 7 +   2379783 GTTGA-TA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470841 7 +   4116138 GTTGA-TA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903121 7 +  58131712 GTTGA-TA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       523568 7 -   3636681 GTTGA-TT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503166 8 -   4457520 GTTGATTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154533806 7 - 158406734 aataa-ta
i calJac3.chr6              C 0 I 309
s saiBol1.JH378292             366563 7 -   2682657 GTTGA-TT
i saiBol1.JH378292          C 0 I 1
s mm10.chr7                  56152358 7 + 145441459 ATTAG-CA
i mm10.chr7                 C 0 I 8
s canFam3.chr3               60053038 7 -  91889043 CATGG-TA
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             437399 7 +    563711 tttaa-tt
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13525760 126 +  16154928 I
e aotNan1.NW_018503298v1       453299 342 +   3831555 I
e otoGar3.GL873689             474390 20 +   3845361 I
e cebCap1.NW_016107707v1       392430 338 -   2086007 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=96531.000000
s hg38.chr15_KI270851v1_alt    203930 20 +    263054 AAAAAAT------------AAGGATA-TATCTT
s panTro5.chr15               9591147 20 +  83230942 AAAAAAT------------AAGGATA-TATCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124811 20 -  99763055 AAAAAAT------------AAGGATA-TATCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168757 20 -    281578 AAAAAAT------------AAGGATA-TGTCTT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164338314 20 - 169600520 AAAAAGT------------AAGGATT-TACATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659280 20 - 171882078 AAAAAGT------------AAGGATT-TACATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       514088 20 +   2379783 AAAAAGT------------AAGGATT-TACATT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470848 20 +   4116138 AAAAAAT------------AAGGATT-TACATT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903128 20 +  58131712 AAAAAAT------------AAGGATT-TACATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       523575 20 -   3636681 AAAAAAC------------AAGGATT-TACATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503174 20 -   4457520 AAAAAAT------------AAGGATT-TACATT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154534122 19 - 158406734 AAAAAAT------------AAGG-TT-TGCATT
i calJac3.chr6              I 309 C 0
s saiBol1.JH378292             366571 19 -   2682657 AAAAAAT------------AAGG-TT-TGCACT
i saiBol1.JH378292          I 1 C 0
s mm10.chr7                  56152373 18 + 145441459 AAGATGT------------GAGGGTTGTGC---
i mm10.chr7                 I 8 C 0
s canFam3.chr3               60053046 20 -  91889043 GTAAATT------------AAAAGTG-TAGATT
i canFam3.chr3              I 1 I 3
s dasNov3.JH562051             437406 32 +    563711 aaaaaatttaacacttttgaataata-aaacct
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13525760 126 +  16154928 I
e aotNan1.NW_018503298v1       453299 342 +   3831555 I
e otoGar3.GL873689             474390 20 +   3845361 I
e cebCap1.NW_016107707v1       392430 338 -   2086007 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=10523.000000
s hg38.chr15_KI270851v1_alt    203950 4 +    263054 TAGG
s panTro5.chr15               9591167 4 +  83230942 TAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124831 4 -  99763055 TAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168777 4 -    281578 TAGG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164338334 4 - 169600520 TAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659300 4 - 171882078 TAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       514108 4 +   2379783 TAGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470868 4 +   4116138 TAGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903148 4 +  58131712 TAGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       523595 4 -   3636681 TAGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503194 4 -   4457520 TAGG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154534141 3 - 158406734 CAT-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             366590 3 -   2682657 CGT-
i saiBol1.JH378292          C 0 C 0
s otoGar3.GL873689             474410 4 +   3845361 TAGT
i otoGar3.GL873689          I 20 C 0
s mm10.chr7                  56152391 4 + 145441459 TAAT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60053069 4 -  91889043 CAGA
i canFam3.chr3              I 3 I 1
s dasNov3.JH562051             437438 4 +    563711 taaa
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13525760 126 +  16154928 I
e aotNan1.NW_018503298v1       453299 342 +   3831555 I
e cebCap1.NW_016107707v1       392430 338 -   2086007 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=399220.000000
s hg38.chr15_KI270851v1_alt    203954 47 +    263054 GATTTGTCTTTAGGGACTTGTTACCAAGCATG-TCTATTTTCCCTCCC
s panTro5.chr15               9591171 47 +  83230942 GATTTGTCTTTAGGGACTTGTTACCAAGCATG-TCTATTTTCCCTCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124835 47 -  99763055 GATTTGTCTTTAGGGACTTGTTACCAAGCATG-TCTATTTTCCCTCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168781 47 -    281578 GATTTGTCTTTAGGGACTTGTTACGAAGCATG-TCTATTTTCCCTCCC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164338338 47 - 169600520 GATTTATCTTTAGGGACTTGTTACCAAGCATG-TCTGTTTTCCCTCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659304 47 - 171882078 GATTTATCTTTAGGGACTTGTTACCAAGCATG-TCTGTTTTCCCTCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       514112 47 +   2379783 GATTTATCTTTAGGGACTTGTTACCAAGCATG-TCTGTTTTCCCTCCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470872 47 +   4116138 GATTTATCTTTAGGGACTTGTTACCAAGCATG-TCTGTTTTCCCTCCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903152 47 +  58131712 GATTTATCTTTAGGGACTTGTTACCAAGCATG-TCTGTTTTCCCTCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       523599 47 -   3636681 GATTTATCTTTAGGGACTTGTTACCAAGCATG-TCTGTTTTCCCTCCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503198 47 -   4457520 AATTTATCTTTAGGGACTTGTTACCAAGCATG-TCTGTTTTCCCTCCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154534144 30 - 158406734 GATTTATCTTTAGGGACT-----------------TGTTTT-CCTCCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             366593 46 -   2682657 GATTTATCCTTAGGGACTTGTCACCAAGAGCG-TCTGTTTT-CCTCCC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       392768 47 -   2086007 GATTTATCTTTAGGGACTTGTTACCAAGAGTGTTTTGTTTT-CCTCCT
i cebCap1.NW_016107707v1    I 338 C 0
s aotNan1.NW_018503298v1       453641 46 +   3831555 GATTTATCTTTAGGGACTTGTTACCAAGAGCG-TCTGTTTT-CCTCCC
i aotNan1.NW_018503298v1    I 342 C 0
s otoGar3.GL873689             474414 46 +   3845361 GATGTCTTTTCAGGGCTTTGTTGCTAAGTGTG-CTCATTTT-CCTCCC
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56152395 42 + 145441459 GCTTTATTTCTC--GACTTGGC-CTGAGCTTG-TC--TTGTCTCTTCT
i mm10.chr7                 C 0 I 1
s canFam3.chr3               60053074 45 -  91889043 TGTTTATTTCTAGAAATTTGGTGCCAAGCTAG-TTTGTTT--CATTCT
i canFam3.chr3              I 1 I 1
s dasNov3.JH562051             437442 33 +    563711 -aataattttta-------------aaatagt-tttattttaattCCG
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13525760 126 +  16154928 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=6744759.000000
s hg38.chr15_KI270851v1_alt    204001 572 +    263054 GCAGCTTCTCCAAACAGGCTGGTGTACAGGGAGCAACACCGGAGCTGGTGCACGCTGGGGTTTGTGCAGAGCATCGCTCTCACGCTGCAGGTGTGCGGCGCCCTCAGCTCCCCGCAGTGGATCACGCTGCTCATGAAGGTCGTGGAAGGGCACGCACCCTTCACTGCCACCTCGCTGCAGAGGCAGGTAA-TGTGCTGCCAGGCAAAACCAGTTC----------------------------CCTGAGAGA---GGCCTCCATGTACTGA-AGTTCCCTGCCC--TCAGAGTCA----GGGGCCTTTATTCCGTAACGAGTGCAGAAAGGGTCTAGAAGTG--A--CAGGGTAGATTTTCTGGAGGCAAGGG--GCAGAGGTCCTTGATAATT--------G-------GTAAGTTGCTAACCTTCAGTTTAC-CTGCTTTTCTCTTAAGTGGTAAATCCTG---CAACTACTTACTCATCTGCTTCACAGAATTTGTAGTGTAATTGTCTTA---AGAATTAAACT--AAAAATAATTCTTTTTTA-ATT----AAA-CA----CATG-CATCTGTAATGTTGCTTTTTT-CTAAAGTCCCTGACAATCCTAATCACTAATCAACTTGAGTGTAATTACCTGGCTGTAAAA
s panTro5.chr15               9591218 571 +  83230942 GCAGCTTCTCCAAACAGGCTGGTGTACAGGGAGCAACACCGGAGCTGGTGCACGCTGGGGTTTGTGCAGAGCATCGCTCTCACGCTGCAGGTGTGCGGCGCCCTCAGCTCCCCGCGGTGGATCACGCTGCTCATGAAGGTCGTGGAAGGGCACGCACCCTTCACTGCCACCTCGCTGCAGAGGCAGGTAA-TGTGCTGCGAGGCAAAACCAGTTC----------------------------CCTGAGAGA---GGCATCCATGTACTGA-AGTTCCCTGCCC--TCAGAGTCA----GGGGCCTTTATTCAGTAACGAGTGCAGAAA-GGTCTAGAAGTG--A--CAGGGTAGATTTTCTGGAGGCAAGGG--GCAGAGGTCCTTGATAATT--------G-------GTAAGTTGCTAACCTTCAGTTTAC-CTGCTTTTCTCTTAAGTGGTAAATCCTG---CAACTACTCACTCATCTGCTTCACAGAATTTGTAGTGTAATTGTCTTA---AGAATTAAACT--AAAAATAATTCTTTTTTA-ATT----AAA-CA----CATG-CATCTGTAATGTTGCTTTTTT-CTAAAGTTCCTGACAATCCTAATCACTAATCAACTTGAGTGTAATTACCTGGCTGTAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74124882 572 -  99763055 GCAGCTTCTCCAAACAGGCTGGTGTACAGGGAGCAACACCGGAGCTGGTGCACGCTGGGGTTTGTGCGGAGCATCGCTCTCACGCCGCAGGTATGCGGTGCCCTCAGCTCCCCGCAGTGGATCACGCTGCTCATGAAGGTCGTGGAAGGGCACGCACCCTTCACTGCCACCTCGCTGCAGAGGCAGGTAA-TGTGCTGCCAGGCAAAACCAGTTC----------------------------CCTGAGAGA---GGCATCCATGTACTGA-AGTTCCCTGCCC--TCAGAGTCA----GGGGCCTTTATTCAGTAACGAGTGCAGAAAGGGTCTAGAAGTG--A--CAGGGTAGATCTTCTGGAGGCAAGGG--GCAGAGGTCCTTGATAATT--------G-------GTAAGTTGCTAACCTTCAGTTTAC-CTGCTTTTCTCTTAAGTGGTAAATCCTG---CAACTACTCACTCATCTGCTTCACGGAATTTGTAGTGTAATTGTCTTA---AGAATTAAACT--AAAAATAATTCTTTTTAA-ATT----AAA-CA----CATG-CATCTGTAATGTTGCTTTTTT-CTAAAGTTCCTGACAATCCTAATCACTAATCAACTTGAGTGTAATTACCTGGCTGTAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       168828 571 -    281578 GCAGCTTCTCCAAACAGGCTGGTGTACAGGGAGCAACACCAGAGCTGGTGCACGCTGGGGTTTGTGCGGAGCATCGCTCTCACGCCGCAGGTGTGCGGCGCCCTCAGCTCCCCGCAGTGGATCACGCTGCTCATGAAGGTCGTGGAAGGGCACGCACCCTTCACTGCCACCTCGCTGCAGAGGCAGGTAA-TGTGCTGCCAGGCAAAACCAGTTC----------------------------CCTGAGAGA---GGCCTCCATGTACTGA-AGTTCCCTGCCC--TCAGAGTCA----GGGGCCTTTATTCAGTAACGAGTGCAGAAAGGGTCTAGAAGTG--A--CAGGGTAGATTTTCTGGAGGCAAGGG--GCAGAGGTCCTTGATAATT--------G-------GTAAGTTGCTAACCTTCAGTTTAC-CTGCTTTTCTCTTAAGTGGTAAATCCTG---CAACTACTCACTCATCTGCTTCACAGAATTTGTAGTGTAATTGTCTTA---AGAATTAAACT--AAAAATAATTCTTTTTTA-ATT----AAA-CA----CATG-CATCTGTAATGTTGCTTTTTT--TAAAGTTCCTGACAATCCTAATCACTAATCAACTTGAGTGTAATTACCTGGCTGTAAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164338385 571 - 169600520 GCAGCTTCTCCAAACAGGCTGGTGTGCAGGGAGCAGCACCGGAGCTGGTGCACGCTGGGGTTTGTGCGGAGCATCGCTCTCACACCGCAAGTGTGTGGCGCCCTCAGCTCCCCGCAGTGGATCACGCTGCTCATGAAGGTCGTGGAAGGGCATGCACCCTTCACTGCCGCCTCGCTGCAGAGGCAGGTAA-TGTGCTGCCAGGCAAAACCAGTTC----------------------------CCTGAGAGA---GGCATCCATGTACTGA-AGTTCCCTGCCC--TCAGAGTCA----GGGGCCTTTATTCATTAACGAGTACAGAAAGGGTCTAGAAGTG--A--CAGGATAGATTTTCTGGAGGCAAGGG--GCAGAGGTCCTTGATAATT--------G-------GTAAGTCAGTAACCTTTAGCTTAC-CTGCTTTTCTCTTCAGTGGTAAATCCTG---CAACTACGCACTCATCTGCTTCACAGAATTTGTAGTGTAATTGTCTTA---AGAATTAAACT--AAAAATAATTCTTTTTTA-ATT----AAA-CA----CATG-CATCTGTAATGTTGCTTTTTT-CTAAAGTCCCTGACAATCCTAATCACTAATCAACTTCAGTGTAATTACC-GGCTGTAAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659351 571 - 171882078 GCAGCTTCTCCAAACAGGCTGGTGTGCAGGGAGCAGCACCGGAGCTGGTGCACGCTGGGGTTTGTGCGGAGCATCGCTCTCACACCGCAAGTGTGTGGCGCCCTCAGCTCCCCGCAGTGGATCACGCTGCTCATGAAGGTCGTGGAAGGGCATGCACCCTTCACTGCCGCCTCGCTGCAGAGGCAGGTAA-TGTGCTGCCAGGCAAAACCAGTTC----------------------------CCTGAGAGA---GGCATCCATGTACTGA-AGTTCCCTGCCC--TCAGAGTCA----GGGGCCTTTATTCATTAACGAGTACAGAAAGGGTCTAGAAGTG--A--CAGGATAGATTTTCTGGAGGCAAGGG--GCAGAGGTCCTTGATAATT--------G-------GTAAGTCACTAACCTTTAGCTTAC-CTGCTTTTCTCTTCAGTGGTAAATCCTG---CAACTACGCACTCATCTGCTTCACAGAATTTGTAGTGTAATTGTCTTA---AGAATTAAACT--AAAAATAATTCTTTTTTA-ATT----AAA-CA----CATG-CATCTGTAATGTTGCTTTTTT-CTAAAGTCCCTGACAATCCTAATCACTAATCAACTTCAGTGTAATTACC-GGCTGTAAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       514159 571 +   2379783 GCAGCTTCTCCAAACAGGCTGGTGTGCAGGGAGCAGCACCGGAGCTGGTGCACGCTGGGGTTTGTGCGGAGCATCGCTCTCACACCGCAAGTGTGTGGCGCCCTCAGCTCCCCACAGTGGATCACGCTGCTCATGAAGGTCGTGGAAGGGCATGCACCCTTCACTGCCGCCTCGCTGCAGAGGCAGGTAA-TGTGCTGCCAGGCAAAACCAGTTC----------------------------CCTGAGAGA---GGCATCCATGTACTGA-AGTTCCCTGCCC--TCAGAGTCA----GGGGCCTTTATTCATTAACGAGTACAGAAAGGGTCTAGAAGTG--A--CAGGATAGATTTTCTGGAGGCAAGGG--GCAGAGGTCCTTGATAATT--------G-------GTAAGTCACTAACCTTTAGCTTAC-CTGCTTTTCTCTTCAGTGGTAAATCCTG---CAACTACGCACTCATCTGCTTCACAGAATTTGTAGTGTAATTGTCTTA---AGAATTAAACT--AAAAATAATTCTTTTTTA-ATT----AAA-CA----CATG-CATCTGTAATGTTGCTTTTTT-CTAAAGTCCCTGACAATCCTAATCACTAATCAACTTGAGTGTAATTACC-GGCTGTAAAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       470919 572 +   4116138 GCAGCTTCTCCAAACAGGCTGGTGTGCAGGGAGCAGCACCGGAGCTGGTGCACGCTGGGGTTTGTGCGGAGCATCGCTCTCACGCCGCAAGTGTGCGGCGCCCTCAGCTCCCCGCAGTGGATCACGCTGCTCATGAAGGTCGTGGAGGGGCATGCACCCTTCACTGCCGCCTCGCTGCAGAGGCAGGTAA-TGTGCTGCCAGGCAAAACCAGTTC----------------------------CCTGAGAGA---GGCATCCATGTACTGA-AGTTCCCTGCCC--TCAGAGTCA----GGGGCCTTTATTCAGTAATGAGTACAGAAAGGGTCTAGAAGTG--A--CAGGGTAGATTTTCTGGAGGCAAGGG--GCAGAGGTCCTTGATAATT--------G-------GTAAGTCACTAACCTTTAGCTTAC-CTGCTTTTCTCTTCAGTGGTAAATCCTG---CAACTACGCACTCATCTGCTTCACAGAATTTGTAGTGTAATTGTCTTA---AGAATTAAACT--AAAAATAATTCTTTTTTA-ATT----AAA-CA----CGTG-CATCTGTAATGTTGCTTTTTT-CTAAAGTCCCTGACAATCCTAATCACTAATCAACTTGAGTGTAATTACCTGGCTGTAAAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903199 572 +  58131712 GCAGCTTCTCCAAACAGGCTGGTGTGCAGGGAGCAGCACCGGAGCTGGTGCACGCTGGGGTTTGTGCGGAGCATCGCTCTCACGCCGCAAGTGTGCGGCGCCCTCAGCTCCCCGCAGTGGATCACGCTGCTCATGAAGGTCGTGGAAGGGCATGCACCCTTCACTGCCGCCTCGCTGCAGAGGCAGGTAA-TGTGCTGCCAGGCAAAACCAGTTC----------------------------CCTGAGAGA---GGCATCCATGTACTGA-AGTTCCCTGCCC--TCAGAGTCA----GGGGCCTTTATTCAGTAACGAGTACAGAAAGGATCTAGAAGTG--A--CAGGGTAGATTTTCTGGAGGCAAGGG--GCAGAGGTCCTTGATAATT--------G-------GTAAGTCACTAACCTTTAGCTTAC-CTGCTTTTCTCTTCAGTGGTAAATCCTG---CAACTACGCACTCATCTGCTTCACAGAATTTGTAGTGTAATTGTCTTA---AGAATTAAACT--AAAAATAATTCTTTTTTA-ATT----AAA-CA----CATG-CATCTGTAATGTTGCTTTTTT-CTAAAGTCCCTGACAATCCTAATCACTAATCAACTTGAGTGTAATTACCTGGCTGTAAAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       523646 572 -   3636681 GCAGCTTCTCCAAACAGGCTGGTGTGCAGGGAGCAGCACCGGAGCTGGTGCACGCTGGGGTTTGTGCGGAGCATCGCTCTCACGCCGCAAGTGTGCGGCGCCCTCAGCTCCCCGCAGTGGATCACGCTGCTCATGAAGGTCGTGGAAGGGCATGCACCCTTCACTGCCGCCTCGCTGCAGAGGCAGGTAA-TGTGCTGCCAGGCAAAACCAGTTC----------------------------CCTGAGAGA---GGCATCCATGTACTGA-AGTTCGCTGCCC--TCAGAGTCA----GGGGCCTTTATTCAGTAACGAGTACAGAAAGGGTCTAGAAGTG--A--CAGGGTAGATTTTCTGGAGGCAAGGG--GCAGAGGTCCTTGATAATT--------G-------GTAAGTCACTAACGTTTAGCTTAC-CTGCTTTTCTCTTCAGTGGTAAATCCTG---CAACTACGCACTCATCTGCTTCACAGAATTTGTAGTGTAATTGTCTTA---AGAATTAAACT--AAAAATAATTCTTTTTTA-ATT----AAA-CA----CATG-CATCTGTAATGTTGCTTTTTT-CTAAAGTCCCTGACAATCCTAATCACTAATCAACTTGAGTGTAATTACCTGGCTGTAAAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503245 568 -   4457520 GCAGCTTCTCCAAACAGGCTGGTGTGCAGGGAGCAGCACCGGAGCTGGTGCACGCTGGGGTTTGTGCGGAGCATCGCTCTCACGCCGCAGGTGTGCGGCGCCCTCAGCTCCCCGCAGTGGATCACGCTGCTCATGAAGGTCGTGGAAGGGCATGCACCCTTCACTGCCGCCTCGCTGCAGAGGCAGGTAA-TGTGCTGCCAGGCAAAACCAGTTC----------------------------CCTGAGAGA---GGCATCCATGTACTGA-AGTTCCCTGCCC--TCAGAGTCA----GGGTCCTTTATTCAGTAAGGAGTGGAGAAAGGGTCTAGAAGTG--A--CAGGGTAGATTTTCTGGAGGCAAGGG--GCAGAGGTCCTTGATAATT--------G-------GTAAGTCACTAACCTTTAGCTTAC-CTGCTTTTCTCTTCAGTGGTAAATCCTG---CAACT----ACTCGTCTGCTTCACAGAATTTGTAGTGTAATTGTCTTA---AGAATTAAACT--AAAAATAATTCTTTTTTA-ATT----AAA-CA----CATG-CATCTGTAATGTTGCTTTTTT-CTCAAGTCCCTGACAATCCTAATCACTAATCAACTTGAGTGTAATTACCTGGCTGTAAAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154534174 537 - 158406734 GCAGCTTCTCCGAACAGGCTGGTGTGCCGGGAGCAGCACCGGAGCTGGTGCACACTGGGGTTTGTGCGGAGCATTGCGCTCACGCAGCAGGTGTGCGGCGCCCTCAGCTCCCCACAGTGGATCACGCTGCTCATGAAGGTCGTGGAAGGTCACGCACCCTTCACTGCCGCCTCACTGCAGAGGCAGGTAC-TGTGCTGCCGGGCAAAACCAGTTC----------------------------TC--AGAGG---GGCAT-CACACACTGA-TGTTCCCTGCCC--TCAGAGTC-----GGGGACTTTCTTCAGTAACAAGTGCAGAAC-GGTCTAGAAGTA--A--CAGGGTAGGTTTTCTGGGGACAAGGG--GCAGAGGTCTTTGACAATC--------G-------GTAAGTTGCTAAACT----------------------TGAGTGGTAAATCCTG---CAGCCACTCTCTCATCTGCTTCACAGGATTCGTAGTGTAATTGTCCTAAGAAGAATGAAACT--AAAAATAATTCTTTTTTA-ATTAAAGAAA-CA----CATG-CATCTCTCATGTCGCTTTTTT-CTAAAGTCC----------------CTCATCAACTTGAATGTAATTACCTGGCCGTATAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             366639 556 -   2682657 GCAGCTTCTCCCAACAGGCTGGTGTGCCGGGAGCAGCACCGGAGCTGGTGCACCCTGGGGTTTGTGCGGAGCATCGCGCTCACGCAGCAGGTGTGCAGCGCCCTCAGCTCCCCACAGTGGATCACGCTGCTCATGAAGGTCGTGGAAGGGCACGCACCCTTCACTGCCGCCTCACTGCAGAGGCAGGTAC-TGTGCTGCCAGGCAAAACCCGTTC----------------------------TCTGAGAGC---GGCCT-CACACGCTGA-AGTTCCCTGCCC--TC--------------------------TAAGGAGTGCAGGGCGGGTCTAGCAGTG--G--CAGGGTAGGTTCTCTGGAGGCCGGGG--GCAGAGGTCTTTGATGGTT--------G-------GTAAGTTGTTAAACTTCAGTTTGC-TTGCTCTTCTCGTAAGTGGTAAATCCTG---CAGCTGCTTTCTCATCTGCTCCACAGGATTCATAGTCTAATTGTCCTAAGGAGAATGAAACT--AAAAGTAATTCTTTTTTA-ATTAAAGAAA-CA----CGCG-TGTCTCTCATGTCGCTTTTTT-CTAAAGTCCCTGACAATCCCAGTCACTCATCAACTTGAATGTAATTACCTGGCTGTAAAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       392815 577 -   2086007 GCAGCTTCTCCAAACAGGCTGGTGTGCCGGGAGCAGCACCGGAGCTGGTGCACACTGGGGTTTGTGCGGAGCATCGCGCTCACGCAGCAGGTGTGCGGCGCCCTCAGCTCCCCGCAGTGGATCACGCTGCTCATGAAGGTCGTGGAAGGGCACGCACCCTTCACTGCCGCCTCACTGCAGAGGCAGGTAC-TGTGCTGCCAGGCAAAACCAGTTC----------------------------TCTGAGAGC---AGCAT-CGCACACTGA-AGTTCCCTGCCC--TCAGAGTC-----GGGGCCTTTATTCAGTAACGAGTGCAGAACGGGTCTAGAAGTG--A--CAGGGTGGGTTCTCTGGAGGTGAGGG--GCAGAGGTCCTTGACAGTC--------G-------GTAAGTTGTTAAACTTTAGTTTGC-CTGCTCTGCTCTTAAGTGGTAAATCCTG---CAGGTACTTTCTCATCTGCTCCACAGGATTCATAGTGTAATCATCCTAAGAAGAATGAAACT--AAAAGTCATTCTTTTTTA-ATTAAAGAAA-CA----CATG-CACCTCTCATGTCGCTTTTTT-CTAAAGTCCCTGACAATCCTAGTCACTCATCAACTTGAATGTAATTACCTGACTGTAAAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       453687 577 +   3831555 GCAGCTTCTCCGAACAGGCTGGTGTGCCGGGAACAGCACCGCAGCTGGTGCACACTGGGGTTTGTGCGGAGCATTGCGCTCACGCAGCAGGTGTGCGGCGCCCTCAGCTCCCCACAGTGGATCACGCTGCTCATGAAGGTCGTGGAAGGGCACGCACCCTTCACTGCCGCCTCACTGCAGAGGCAGGTAC-TGTGCTGCCAGGCAAAACCAGTTC----------------------------TCTGAGAGA---GGCAT-CACACACTGA-AGTTCCCTGGCC--TCAAAGTC-----GGGGCCTTTATTCAGTAATGAGTGCAGAACAGGTCTAGAAGTG--A--CAAGGTAGGTTTTCTGGGGACCAGGG--GCAGAGGTCTTTGACAGTC--------G-------GTAAGTTGTTAAACTTTAGTTTGC-TTGCTCTTCTCTTAAGTGGTAAATCCTT---CAGCTACTCTCTCATCTGCTTCACAGGATTCGTAGTGTAATTGTTCTAAGAAGAATGAAACT--AAAAATAATTCTTTTTTA-ATTAAAGAAA-CA----CATG-CATCTCTCATGTCGCTTTTTT-CTAAAGTCCCTGACAATCCTAGTCACTCATCAACTTGAGTGTAATTACCTGGCTGTAAAA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13525886 574 +  16154928 GCAGCTTCTCCAAACAGGCTGGTGTACAGAGAGCAGCACCGGAGCTGGTGCACACTCGGATTTGTGCGGAGCATTGCGCTCACGCCGCAGGTGTGCGGCGCCCTCAGCTCCCCACAGTGGATCACGCTGCTCATGAAGGTCGTGGAAGGGCATGCGCCCTTCACCGCCGCGTCGCTGCAGAGGCAGGTAA-TGTGCTGCTGGGCAGCCCCCAACC----------------------------ACTGAGAGA---GGCATCCACATGCCGC-TGCTCCCAGCCC--TCCGAGTCA----GGCGCCTTTATTCAGTGATGAATGCAGAAAAGAACTAGAAGTGACA--CAGGGTGGATTTTCTAGATGCA---------GAGGTTCTTGATTATTTTCTGCTGG-------GCAAGTTGCTAAACTTTAGTTTAC-TTGCTTTTCTGTTAAGTGATAAATTCTG---CAACTGCTC-TTCATCTGCTTCACAGGAGTTGTAGT--TATTGTTTTAAGAAGCATTAAAAG--AAAAAGACTTCTTTTTTG--TTGAGGAAA-CAAATACATG-CATCTTTAATAT--CTTTT-------AACCCCTGATAATCCTTACCATTAATCAACTTGGGTGTAATTATCTGGCTGTAAAA
i proCoq1.NW_012148396v1    I 126 C 0
s otoGar3.GL873689             474460 559 +   3845361 GCAGCTTCTCCAAACAGGCTGGTGTATCGAGAGCAGCACCGTAGCTGGTGCACACTTGGGTTTGTGAGGAGCATCGCACTCACACCACAGGTGTGCGGTGCCCTCAGCTCCCCGCAGTGGATCACGCTGCTCATGAAGGTCATGGAAGGGCACGCGCCCTTCACCGCCGCCTCGTTGCAGAGGCAGGTAA-TGTGCTGC-GGGCAGAGCCCAGCC--------------------------------------------------TGCTGTGTGCTCCCAGGCC--GCCAAGGCA----GGGGCCCTCATTCAGTGATATGTGCAGAGAAGAATTAGAAGGGACA--CAGGGTAGA--TTCTAGAGGCGAGGA--GT-GAGGTGCCTGGTCACTTCAAGTTGG-------ATACATTGCTAAGCTTTAGTTTAC-TTGCTTTTTTGTTAAGTGATAAATTCTG---CGTCTCCTC--TCATCTGCTTCCCTGAGGTTGCAGTGCTCCTGTTTTAAGAAGCATTAAATG--AAAAGGAATTCTTTTTTGAATTGAATAGA-CATAATCTTG-TGTCTGCAATGT--CTTTT-------AACCTCTGATAATCCTGACCATTAATCGTCTTAGGTGTA---ATCTGGCTATAAAA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56152438 502 + 145441459 GCAGCTCCTCCAGACAGACTGGTGGCCCGGGAGCAGCACCGGAGCTGGTGTACACTGGGCTTCGTCCGCAGCATTGCCCTCACCCCACAGGCCTGTGGTGCTCTCAGCTCCCCAAGGTGGATCACACTGCTCATGAAGGTTGTGGAAGGCCACGCACCGTTCACTGCTGCCTCCCTGCAGAGGCAGGTAA-TGTGCTGCTGGCAAAGCCCAGCTC----------------------------ATCGCGAGACCGGGCA-----GTACGGA-AGC-CCCTGACC--TCGTAACCA----GGCGTCTTTACTGA-TGCTGAATGGAGAGTAGC------------A--CTGAGTAGTTGTTCTGGCTTCTTAGGTTGCTGAGGTTCTTGGTTACT--------GCAGTCCTGTAAGTTGCTAG---TGAGTTTAT-TGCCTTATTTGCTC-------------------------------TCTGCCCCATTGGAATAGTAGTGTGGTTGCC--A---AGAATTAAGTTTAAAGAACAATTTTCACTTA-AAC----AAATTA----CATT-TATTTG------------------AAATTTCCTGCTAATCCTGCCTATTAACCAACTTGATT------------------AA
i mm10.chr7                 I 1 C 0
s canFam3.chr3               60053120 615 -  91889043 GCAGCTTCCCCAAACAGGCTGGTATGCCGGGAGCAGCACCGGAGCTGGTGCACGCTGGGCTTCGTGCGGAGCATTGCACTTACACCACACATGTGTGCTGCCCTCAGCTCCCCACAGTGGATTGCCCTGCTTATGAAGGTTGTGGAGGGACACGCACCTTTCACCGCCGCCTCACTACAACGGCAGGTAATTGTACTGCTGGGCTCATCCTGCTCAGTGTGAATTTTGGGACTGTAGGACCCCCTTAAGAGGT--GGCATCAAGATACCAG-TCCTCCCAGTCA--TTATAATTA----GGTGCCTGTACTCAATAATGAGTGCAGAGAAGGACTAGGACCA--ACCCAATGTAGATTTTCTAG-TGTAAGAG--GCTGAAGTTTTTGATTATTTTAA----A-------TTAAGTCACTAAACTGTACTTGACTTTTTTTTTCTTTGAAGTGATAAATCCTG--CCAGCTGCTC--TTAGGTGCTTCATAGAAGTTGTAGTATAATTGTCTTTAGAAGAATTAAGCT--Gaaaataattatttttta-attcaataaa-ta----tCTG-CATCTGTAATAAAGGTTTTTTAAAAAAAATCCTGATAATCTATATTTTTAATTAACTTGGCTATAATCATCTAATTTTAGAA
i canFam3.chr3              I 1 I 2
s dasNov3.JH562051             437475 563 +    563711 GCAGTATTACCAAACAAAGTGGTGTTTAAAGAGCAACACCGAAGCTGGTGCACACTGGGGTTTGTGCGGAGCATCGCTCTTACGCCGCAGATGTGCGGTGCCCTCAGCTCCCCGCAGTGGATCGCCCTCCTGATGAGGATTGTGGAGGGCCATGCGCCCTTCACCGCAGCGTCGCTGCAGAGGCAGGTGA-GTCGTTGCTGG-----CCCTGGCC----------------------------CCTTCTGCA---CGCATTTAACACCTGG-TGGGGCCACCCCAGTCAGCGCTATAATGAAGGCCTTGTTCAGTAAGGGTTGGTGAAGAGAAGTACAGGTA--GGTTGGCATAGGTTTTCTAGAGGTACAGG--GTGGAGGTTCTTGATTGCTTTTAATTGG-------GTAAGTTACAGAACTTTAGTTTGC-CT----TTCAGTTAAATGAATAGTTTTGTACCAGGTGCTC--TCATTCGCTTCACAGGTATTAAAATGTAATAGTCTTG---AA-----------AGAATTATTTTTTAGTTA-ATAGAACGAA-TA----CATTCCATCTATAACATAGCTTTTTT-TTTAA-CCACTGATAATC------------CAACTTTTGAATAATTATTCAGCTATAAAA
i dasNov3.JH562051          C 0 C 0
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=31122.000000
s hg38.chr15_KI270851v1_alt    204573 2 +    263054 TA
s panTro5.chr15               9591789 2 +  83230942 TA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74125454 2 -  99763055 TA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       169399 2 -    281578 TA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164338956 2 - 169600520 TA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659922 2 - 171882078 TA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       514730 2 +   2379783 TA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       471491 2 +   4116138 TA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903771 2 +  58131712 TA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       524218 2 -   3636681 TA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503813 2 -   4457520 TA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154534711 2 - 158406734 TA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             367195 2 -   2682657 TA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       393392 2 -   2086007 TA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       454264 2 +   3831555 TA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13526460 2 +  16154928 TA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             475019 2 +   3845361 TA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56152940 2 + 145441459 TA
i mm10.chr7                 C 0 C 0
s dasNov3.JH562051             438038 2 +    563711 TA
i dasNov3.JH562051          C 0 C 0
e canFam3.chr3               60053735 2 -  91889043 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=238358.000000
s hg38.chr15_KI270851v1_alt    204575 19 +    263054 ATGAATCTCAAAATTTTCA
s panTro5.chr15               9591791 19 +  83230942 ATGAATCTCAAAATTTTCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74125456 19 -  99763055 ATGAATCTCAAAATTTTCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       169401 19 -    281578 ATGAATCTCAAAATTTTCA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164338958 19 - 169600520 ATGAATCTCAAAATTTTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659924 19 - 171882078 ATGAATCTCAAAATTTTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       514732 19 +   2379783 ATGAATCTCAAAATTTTCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       471493 19 +   4116138 ATGAATCTCAAAATTTTCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903773 19 +  58131712 ATGAATCTCAAAATTTTCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       524220 19 -   3636681 ATGAATCTCAAAATTTTCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503815 19 -   4457520 ATGAATCTCAAAATTTTCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154534713 19 - 158406734 ATAAATCTCAAAATTTTCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             367197 19 -   2682657 ACGAATCTCAAAATTTTCA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       393394 19 -   2086007 ATGAATCTCAAAATTTTCA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       454266 19 +   3831555 ATGAATCTCAAAATTTTCA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13526462 19 +  16154928 ATGAATATCAAAATTTTCA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             475021 19 +   3845361 ATGTATGTCAAAATTTTCA
i otoGar3.GL873689          C 0 I 79
s mm10.chr7                  56152942 15 + 145441459 ATGAATC---AAGTTGTA-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60053737 19 -  91889043 ATGAATATCTGAATTTTCT
i canFam3.chr3              I 2 C 0
s dasNov3.JH562051             438040 12 +    563711 -------CCAATTTTTTCA
i dasNov3.JH562051          C 0 C 0
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=88644.000000
s hg38.chr15_KI270851v1_alt    204594 8 +    263054 CATGATTA
s panTro5.chr15               9591810 8 +  83230942 CATGATTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74125475 8 -  99763055 CATGATTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       169420 8 -    281578 CATGATTA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164338977 8 - 169600520 CATGATTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659943 8 - 171882078 CATGATTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       514751 8 +   2379783 CATGATTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       471512 8 +   4116138 CATGATTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903792 8 +  58131712 CATGATTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       524239 8 -   3636681 CATGATTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503834 8 -   4457520 CATGATTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154534732 8 - 158406734 CATGATTA
i calJac3.chr6              C 0 I 40
s saiBol1.JH378292             367216 8 -   2682657 CATGATGA
i saiBol1.JH378292          C 0 I 40
s cebCap1.NW_016107707v1       393413 8 -   2086007 CATGATTA
i cebCap1.NW_016107707v1    C 0 I 58
s aotNan1.NW_018503298v1       454285 8 +   3831555 CATGATTA
i aotNan1.NW_018503298v1    C 0 I 58
s proCoq1.NW_012148396v1     13526481 8 +  16154928 CATCATAA
i proCoq1.NW_012148396v1    C 0 C 0
s mm10.chr7                  56152957 8 + 145441459 CATCATTA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60053756 8 -  91889043 CATAATTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             438052 7 +    563711 CAT-ATTA
i dasNov3.JH562051          C 0 C 0
e otoGar3.GL873689             475040 79 +   3845361 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=67612.000000
s hg38.chr15_KI270851v1_alt    204602 8 +    263054 CTTGCATT
s panTro5.chr15               9591818 8 +  83230942 CTTGCGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74125483 8 -  99763055 CTTGCGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       169428 8 -    281578 CTTGCGTT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164338985 8 - 169600520 CTTGCATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659951 8 - 171882078 CTTGCATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       514759 8 +   2379783 CTTGCATT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       471520 8 +   4116138 CTTGCATT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903800 8 +  58131712 CTTGCATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       524247 8 -   3636681 CTTGCATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503842 8 -   4457520 CTTGCATT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154534780 8 - 158406734 ATTCCATT
i calJac3.chr6              I 40 C 0
s saiBol1.JH378292             367264 8 -   2682657 ATTGCATT
i saiBol1.JH378292          I 40 C 0
s proCoq1.NW_012148396v1     13526489 8 +  16154928 ATTGCACT
i proCoq1.NW_012148396v1    C 0 C 0
s mm10.chr7                  56152965 7 + 145441459 -ATTTATT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60053764 8 -  91889043 ATTGCATT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             438059 8 +    563711 ATTGTATT
i dasNov3.JH562051          C 0 C 0
e aotNan1.NW_018503298v1       454293 58 +   3831555 I
e otoGar3.GL873689             475040 79 +   3845361 I
e cebCap1.NW_016107707v1       393421 58 -   2086007 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=77658.000000
s hg38.chr15_KI270851v1_alt    204610 8 +    263054 ATGAGAAC
s panTro5.chr15               9591826 8 +  83230942 ATGAGAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74125491 8 -  99763055 ATGAGAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       169436 8 -    281578 ATGAGAAC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164338993 8 - 169600520 ATGAGAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659959 8 - 171882078 ATGAGAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       514767 8 +   2379783 ATGAGAAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       471528 8 +   4116138 ATGAGAAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903808 8 +  58131712 ATGAGAAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       524255 8 -   3636681 ATGAGAAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503850 8 -   4457520 ATGAGAAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154534788 8 - 158406734 ATGAGAAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             367272 8 -   2682657 ATGAGAAC
i saiBol1.JH378292          C 0 C 0
s proCoq1.NW_012148396v1     13526497 8 +  16154928 ATAGGAAC
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               60053772 8 -  91889043 ATAGGAAC
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             438067 8 +    563711 ATAGGACC
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56152972 0 + 145441459 C
e aotNan1.NW_018503298v1       454293 58 +   3831555 I
e otoGar3.GL873689             475040 79 +   3845361 I
e cebCap1.NW_016107707v1       393421 58 -   2086007 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=88840.000000
s hg38.chr15_KI270851v1_alt    204618 11 +    263054 AGAAAATAAAG
s panTro5.chr15               9591834 11 +  83230942 AGAAAATAAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74125499 11 -  99763055 AGAAAATAGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       169444 11 -    281578 AGAAAATAAAG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164339001 11 - 169600520 AGAAAATAAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659967 11 - 171882078 AGAAAATAAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       514775 11 +   2379783 AGAAAATAAAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       471536 11 +   4116138 AGAAAATAAAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903816 11 +  58131712 AGAAAATAAAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       524263 11 -   3636681 AGAAAATAAAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503858 11 -   4457520 AGAAAATAAAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154534796 11 - 158406734 TGAAAATAAAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             367280 11 -   2682657 AGAAAATAAAG
i saiBol1.JH378292          C 0 C 0
s proCoq1.NW_012148396v1     13526505 11 +  16154928 AAAAAGTAAAG
i proCoq1.NW_012148396v1    C 0 C 0
s dasNov3.JH562051             438075 11 +    563711 CAAATCTAAAG
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56152972  0 + 145441459 C
e canFam3.chr3               60053780  0 -  91889043 C
e aotNan1.NW_018503298v1       454293 58 +   3831555 I
e otoGar3.GL873689             475040 79 +   3845361 I
e cebCap1.NW_016107707v1       393421 58 -   2086007 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=21996.000000
s hg38.chr15_KI270851v1_alt    204629 3 +    263054 AGA
s panTro5.chr15               9591845 3 +  83230942 AGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74125510 3 -  99763055 AGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       169455 3 -    281578 AGA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164339012 3 - 169600520 AGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659978 3 - 171882078 AGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       514786 3 +   2379783 AGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       471547 3 +   4116138 AGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903827 3 +  58131712 AGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       524274 3 -   3636681 AGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503869 3 -   4457520 AGA
i colAng1.NW_012115278v1    C 0 C 0
s proCoq1.NW_012148396v1     13526516 3 +  16154928 AGA
i proCoq1.NW_012148396v1    C 0 I 40
s dasNov3.JH562051             438086 3 +    563711 AGA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56152972 0 + 145441459 C
e canFam3.chr3               60053780 0 -  91889043 C
e aotNan1.NW_018503298v1       454293 58 +   3831555 I
e otoGar3.GL873689             475040 79 +   3845361 I
e cebCap1.NW_016107707v1       393421 58 -   2086007 I
e nomLeu3.chr6               71027480 6354 + 121039945 M
e saiBol1.JH378292             367291 0 -   2682657 C
e calJac3.chr6              154534807 0 - 158406734 C

a score=627564.000000
s hg38.chr15_KI270851v1_alt    204632 131 +    263054 ggctgggcgcagtggctcatgcctgtaatcccagcactttgggaggcagaggcaggtgtatcatgaggtcaggagtttgagaccagcctggccaacatagtgaaatcctgtctctactgaaaatcc-aaaaa
s panTro5.chr15               9591848 131 +  83230942 ggccgggtgcagtggctcatgcctgtaatcccagcactttgggaggcagaggcaggtgtatcatgaggtcaggagtttgagaccagcctggccaacatagtgaaatcctgtctctactaaaaatcc-aaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74125513 132 -  99763055 Cgccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccgaggcaggtggatcatgaggtcaggagtttgagaccagcctggccaacatagtgaaattctgtctctaccaaaaatccaaaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       169458 131 -    281578 ggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccgaggcaggtgtatcatgaggtcaggagtttgagaccagcctggccaacatagtgaaattctgtctctaccaaaaatcc-aaaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164339015 131 - 169600520 ggccgggcacagtggctcatgcctataatcccagcactttgggaggccgaggcaggtgtatcacgaggtcaagagttcgagatcagcctggccaacatagtgaaatcctgtctctactaaaaatac-aaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165659981 131 - 171882078 ggccgggcacagtggctcatgcctataatcccagcactttgggaggccgaggcaggtgtatcacgaggtcaagagttcgagatcagcctggccaacatagtgaaatcctgtctctactaaaaatac-aaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       514789 131 +   2379783 ggccgggcacagtggctcatgcctataatcccagcactttgggaggccgaggcaggtgtatcacgaggtcaagagttcgagatcagcctggccaacatagtgaaatcctgtctctactaaaaatac-aaaaa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       471550 131 +   4116138 ggccgggcacagtggctcatgcctataatcccagcactttgggaggccgaggcaggtgtatcacgaggtcaagagttcgagatcagcctggccaacatagtgaaatcctgtctctactaaaaatac-aaaaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903830 131 +  58131712 ggccgggcacagtggctcatgcctataatcccagcactttgggaggccgaggcaggtgtatcacgaggtcaagagttcgagatcagcctggccaacatagtgaaatcctgtctctactaaaaatac-aaaaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       524277 131 -   3636681 ggccgggcacagtggctcatgcctataatcccagcactttgggaggccgaggcaggtgtatcacgaggtcaagagtttgagatcagcctggccaacacagtgaaatcctctctctactaaaaatac-aaaaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       503872 132 -   4457520 ggccgggcacagtggctcatgcctataatcccagcactttgggaggccgaggcaggtggatcacgaggtccagagttcgagatcagcctggtcaacatagtgaaatcctgcctctactaaaaatacaaaaaa
i colAng1.NW_012115278v1    C 0 C 0
e mm10.chr7                  56152972   0 + 145441459 C
e proCoq1.NW_012148396v1     13526519  40 +  16154928 I
e dasNov3.JH562051             438089   0 +    563711 C
e canFam3.chr3               60053780   0 -  91889043 C
e aotNan1.NW_018503298v1       454293  58 +   3831555 I
e otoGar3.GL873689             475040  79 +   3845361 I
e cebCap1.NW_016107707v1       393421  58 -   2086007 I
e nomLeu3.chr6               71027480 6354 + 121039945 M
e saiBol1.JH378292             367291   0 -   2682657 C
e calJac3.chr6              154534807   0 - 158406734 C

a score=651393.000000
s hg38.chr15_KI270851v1_alt    204763 155 +    263054 aaatgagccgggcttggtggtgagtgcctataatcccagctactcaggaagctgaagcaaggagaatcgcttgaacctgggaggtggtgg-ttgtagtgaaccaagaccgtgccactgcactccagcctgggcgacagtgcgagactctgtctc----aa
s panTro5.chr15               9591979 157 +  83230942 aaatgagccgggcttggtggtgagtgcctataatcccagctactcaggaagctgaagcaaggagaatcgcttgaacctgggaggtggtgg-ttgtagtgagccaagaccgtgccactgcactccagcccgggtgacagtgtgagactctgtctc--aaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74125645 153 -  99763055 aaatgagccgggcttggtggtgggtgcctgtaatcccagctactcaggaagctgaagcaaggagaatcgtttgaacctgggaggtgggagtttgtagtgagccaagaccgtgccactgcactccagcctgggcgacagtgcgagactctgtct-------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       169589 156 -    281578 aaatgagccgggcttggtggtgggtgcctgtaatcccagctactcaagaagctgaagcaaggagaatcgtttgaacctgggaggtggagt-ttgtagtgagccaagaccgtgccactgcactccagcccaggtggcagtgtgagactctgtctc---aaa
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164339146 159 - 169600520 aagtgagctgggcttggtggtgggtgcctgtaatctcagctacttgggaagctgaagcaaggagaattgcttaaacctgggaggcatggg-ttgtagtgagctgagatcgtgccactgcactccagcccaggcgacagggcgagactctgtctcaaaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165660112 156 - 171882078 aagtgagctgggcttggtggtgggtgcctgtaatctcagctacttgggaagctgaagcaaggagaattgcttaaacctgggaggcatggg-ttgtagtgagctgagatcgtgccactgcactccagcccaggcgacagggcgagactctgtctc---aaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       514920 155 +   2379783 aagtgagctgggcttggtggtgggtgcctgtaatctcagctacttgggaagctgaagcaaggagaattgcttaaacctgggaggcatggg-ttgtagtgagctgagatcgtgccactgcactccagcccaggcgacagggcgagactctgtctc----aa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       471681 156 +   4116138 aagtgagctgggcttggtggtgggtgactgtaatctcagctacttgggaagctgaagcaaggagaattgcttgaacctgggaggcatggg-ttgtagtgagctgagatcgtgccactgcactccagcccaggcgacagggcgagactctgtctc---aaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53903961 156 +  58131712 cagtgagctgggcttggtggtgggtgcctgtaatctcagctacttgggaagctgaagcaaggagaattgcttgaacctgggaggcatggg-ttgtagtgagctgagatcgtgccactgcactccagcccaggcgacaaggcgagactctgtctc---aaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       524408 156 -   3636681 aagtgagctgggcttggtggtgggtgcctgtaatctcagctacttgggaagctgaagcaaggagaattgcttgaacctgggaggcatggg-ttgtagtgagctgagatcgtgccactgcactccagcccaggcgacagggcgagactctgtctc---aag
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       504004 153 -   4457520 aagtgagccgggcttggtggtgggtgcctgtaatctcagctacttaggaagctgaagcaaggagaattgcttgaacctgggaggcgtggg-ttgtagtgagctgagatcgtgccactgcattccagcccaggtgacagggcgagactctgtctc------
i colAng1.NW_012115278v1    C 0 C 0
s dasNov3.JH562051             438089  38 +    563711 AAATAAAC-----------------ACCTACAACCTC----------------------------------TCAGTCTGT------TGGA-TAATA----------------------------------------------------------------
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56152972   0 + 145441459 C
e proCoq1.NW_012148396v1     13526519  40 +  16154928 I
e canFam3.chr3               60053780   0 -  91889043 C
e aotNan1.NW_018503298v1       454293  58 +   3831555 I
e otoGar3.GL873689             475040  79 +   3845361 I
e cebCap1.NW_016107707v1       393421  58 -   2086007 I
e nomLeu3.chr6               71027480 6354 + 121039945 M
e saiBol1.JH378292             367291   0 -   2682657 C
e calJac3.chr6              154534807   0 - 158406734 C

a score=6006.000000
s hg38.chr15_KI270851v1_alt    204918 1 +    263054 a
s panTro5.chr15               9592136 1 +  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74125798 1 -  99763055 a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       169745 1 -    281578 a
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164339305 1 - 169600520 a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165660268 1 - 171882078 a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       515075 1 +   2379783 a
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       471837 1 +   4116138 a
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53904117 1 +  58131712 a
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       524564 1 -   3636681 a
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       504157 1 -   4457520 a
i colAng1.NW_012115278v1    C 0 C 0
s mm10.chr7                  56152972 1 + 145441459 A
i mm10.chr7                 C 0 C 0
e proCoq1.NW_012148396v1     13526519 40 +  16154928 I
e dasNov3.JH562051             438127 0 +    563711 C
e canFam3.chr3               60053780 0 -  91889043 C
e aotNan1.NW_018503298v1       454293 58 +   3831555 I
e otoGar3.GL873689             475040 79 +   3845361 I
e cebCap1.NW_016107707v1       393421 58 -   2086007 I
e nomLeu3.chr6               71027480 6354 + 121039945 M
e saiBol1.JH378292             367291 0 -   2682657 C
e calJac3.chr6              154534807 0 - 158406734 C

a score=3285.000000
s hg38.chr15_KI270851v1_alt    204919 1 +    263054 a
s panTro5.chr15               9592137 1 +  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74125799 1 -  99763055 c
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       169746 1 -    281578 a
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164339306 1 - 169600520 a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165660269 1 - 171882078 a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       515076 1 +   2379783 a
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       471838 1 +   4116138 a
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53904118 1 +  58131712 a
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       524565 1 -   3636681 a
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       504158 1 -   4457520 a
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             475119 1 +   3845361 G
i otoGar3.GL873689          I 79 C 0
s mm10.chr7                  56152973 1 + 145441459 A
i mm10.chr7                 C 0 C 0
e proCoq1.NW_012148396v1     13526519 40 +  16154928 I
e dasNov3.JH562051             438127 0 +    563711 C
e canFam3.chr3               60053780 0 -  91889043 C
e aotNan1.NW_018503298v1       454293 58 +   3831555 I
e cebCap1.NW_016107707v1       393421 58 -   2086007 I
e nomLeu3.chr6               71027480 6354 + 121039945 M
e saiBol1.JH378292             367291 0 -   2682657 C
e calJac3.chr6              154534807 0 - 158406734 C

a score=14976.000000
s hg38.chr15_KI270851v1_alt    204920 2 +    263054 aa
s panTro5.chr15               9592138 2 +  83230942 aa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74125800 2 -  99763055 aa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       169747 2 -    281578 aa
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164339307 2 - 169600520 aa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165660270 2 - 171882078 aa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       515077 2 +   2379783 aa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       471839 2 +   4116138 aa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53904119 2 +  58131712 aa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       524566 2 -   3636681 aa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       504159 2 -   4457520 aa
i colAng1.NW_012115278v1    C 0 C 0
s otoGar3.GL873689             475120 2 +   3845361 AA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56152974 2 + 145441459 AG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60053780 2 -  91889043 AA
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13526519 40 +  16154928 I
e dasNov3.JH562051             438127 0 +    563711 C
e aotNan1.NW_018503298v1       454293 58 +   3831555 I
e cebCap1.NW_016107707v1       393421 58 -   2086007 I
e nomLeu3.chr6               71027480 6354 + 121039945 M
e saiBol1.JH378292             367291 0 -   2682657 C
e calJac3.chr6              154534807 0 - 158406734 C

a score=18845.000000
s hg38.chr15_KI270851v1_alt    204922  9 +    263054 a--aaaa---aaaa
s panTro5.chr15               9592140  9 +  83230942 a--aaaa---aaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74125802  9 -  99763055 a--aaaa---aaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       169749  9 -    281578 a--aaaa---aaca
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164339309 12 - 169600520 a--aaaaggtaaag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165660272 12 - 171882078 a--aaaaggtaaag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       515079 12 +   2379783 a--aaaaggtaaag
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       471841 12 +   4116138 a--aaaaggtaaag
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53904121 14 +  58131712 aagaaaaggtaaag
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       524568 12 -   3636681 a--aaaaggtaaag
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       504161 12 -   4457520 a--aaaaggtaaag
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       393479  9 -   2086007 ---AAAA--TAAAG
i cebCap1.NW_016107707v1    I 58 C 0
s aotNan1.NW_018503298v1       454351  9 +   3831555 ---AAAA--TAAAG
i aotNan1.NW_018503298v1    I 58 C 0
s otoGar3.GL873689             475122  9 +   3845361 --CAAAA---AAAG
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56152976  9 + 145441459 -----GAAGTAGAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60053782  9 -  91889043 ----AAAAATAAA-
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13526519 40 +  16154928 I
e dasNov3.JH562051             438127  0 +    563711 C
e nomLeu3.chr6               71027480 6354 + 121039945 M
e saiBol1.JH378292             367291  0 -   2682657 C
e calJac3.chr6              154534807  0 - 158406734 C

a score=222850.000000
s hg38.chr15_KI270851v1_alt    204931 35 +    263054 agaaaaTAACAATCTGTAGTTTCCTCATCAGA---------------T---TT
s panTro5.chr15               9592149 35 +  83230942 aaaaaaaaaCAATCTGTAGTTTCCTCATCAGA---------------T---TT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74125811 35 -  99763055 agaaaaTAACAATCTGTAGTTTCCTCATCAGA---------------T---TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       169758 35 -    281578 aaaaaaaaaCAATCTGTAGTTTCCTCATCAGA---------------T---TT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164339321 36 - 169600520 agaaaaTAACAATCTGTAGTTTCTTAATCAGA--------------TT---TT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165660284 36 - 171882078 agaaaaTAACAATCTGTAGTTTCTTAATCAGA--------------TT---TT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       515091 35 +   2379783 agaaaaTAACAATCTGTAGTTTCTTAATCAGA---------------T---TT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       471853 36 +   4116138 agaaaaTAACAATCTGTAGTTTCTTAATCAGA--------------TT---TT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53904135 38 +  58131712 agaaaaTAACAATCTGTAGTTTCTTAATCAGA------------TTTT---TT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       524580 36 -   3636681 agaaaaTAACAATCTGTAGTTTCTTAATCAGA--------------TT---TT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       504173 36 -   4457520 agaaaaTAACAATCTGTAGTTTCTTAATCAGA--------------TT---TT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154534807 35 - 158406734 AGAAAATAGCAATCTGTAATTTGTTAATCAGA---------------C---TT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             367291 34 -   2682657 AGATAATAGCAATCTGTAATTTCTTCGTCAGA---------------C----T
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       393488 34 -   2086007 AGAAAACAGCAATCTGTAATTTCTTAATCAGA---------------C----T
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       454360 34 +   3831555 AGAAAATAGCAATCTGTAATTTCTTAATCAGA---------------C----T
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             475131 36 +   3845361 AGCAAATTGCAATCTG--ATTTCTTTATCAGT---------------TAAGTT
i otoGar3.GL873689          C 0 I 1
s mm10.chr7                  56152985 23 + 145441459 AGAAGGTAAGAATGTGTAATGTC------------------------------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60053791 45 -  91889043 AGAAA-----AATCTGTTATTTCTTAATCTAAAATCACAGATAGTGGT---TT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             438127  4 +    563711 ------------------GTTT-------------------------------
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13526519 40 +  16154928 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=2829630.000000
s hg38.chr15_KI270851v1_alt    204966 189 +    263054 TTTTT-AATGCTTGTCATTTTAAATTTTCTTTTATCAGATCTTAGCTGTGCATTTGTTGCAAGCAGTCCTTCCGTCATGGGACAAGACCGAAAGGGCGAGGGACATGAAATGCCTCATGGAGAAGCTGTTTGACTTCTTGGGGAGCTTGCTCACTATGTGCTCCTCTGACGTGCCGTTACTCAGAGGTGG
s panTro5.chr15               9592184 189 +  83230942 TTTTT-AATGCTTGTCGTTATAAATTTTCTTTTATCAGATCTTAGCTGTGCATTTGTTGCAAGCAGTCCTTCCGTCATGGGACAAGACCGAAAGGGCGAGGGACATGAAATGCCTCGTGGAGAAGCTGTTTGACTTCTTGGGGAGCTTGCTCACTATGTGCTCCTCTGACGTGCCGTTACTCAGAGGTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74125846 189 -  99763055 TTTTT-AATGCTTGTCATTTTAAATTTTCTTTTATCAGATCTTAGCTGTGCATTTGTTGCAAGCAGTCCTTCCGTCATGGGACAAGACCGAAAGGGCGAGGGACATGAAATGCCTCGTGGAGAAGCTGTTTGACTTCTTGGGAAGCTTGCTCACTACCTGCTCCTCCGACGTGCCATTACTCAGAGGTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       169793 189 -    281578 TTTTT-AATGCTTGTCGTTATAAATTTTCTTTTATCAGATCTTAGCTGTGCATTTGTTGCAAGCAGTCCTTCCATCATGGGACAAGACCGAAAGGGCGAGGGACATGAAATGCCTCGTGGAGAAGCTGTTTGACTTCTTGGGGAGCTTGCTCACTACCTGCTCCTCCGACGTGCCATTACTCAGAGGTGG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164339357 189 - 169600520 TTTTT-AATGCTTGTCGTTTTAAATTGTCTTTTATCAGATCTTAGCTGTGCATTTATTGCAAGCAGTCCTTCCGTCATGGGACAAGACCGAAAGGGCGAGGGACATGAAGTGCCTTGTGGAGAAGCTGTTTGGCTTCTTGGGGAGCTTGCTCACTACCTGCTCTTCCGACGTGCCGTTACTCAGAGGTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165660320 189 - 171882078 TTTTT-AATGCTTGTCGTTTTAAATTGTCTTTTATCAGATCTTAGCTGTGCATTTATTGCAAGCAGTCCTTCCGTCATGGGACAAGACCGAAAGGGCGAGGGACATGAAGTGCCTTGTGGAGAAGCTGTTTGGCTTCTTGGGGAGCTTGCTCACTACCTGCTCTTCCGACGTGCCGTTACTCAGAGGTGG
i macFas5.chr7              C 0 T 20
s macNem1.NW_012011934v1       515126 189 +   2379783 TTTTT-AATGCTTGTCGTTTTAAATTGTCTTTTATCAGATCTTAGCTGTGCATTTATTGCAAGCAGTCCTTCCGTCATGGGACAAGACCGAAAGGGCGAGGGACATGAAGTGCCTTGTGGAGAAGCTGTTTGGCTTCTTGGGGAGCTTGCTCACTACCTGCTCTTCCGACGTGCCGTTACTCAGAGGTGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       471889 188 +   4116138 TTTTT-AATGCTTGTC-TTTTAAATTGTCTTTTATCAGATCTTAGCTGTGCATTTATTGCAAGCAGTCCTTCCGTCATGGGACAAGACCGAAAGGGCGGGGGACATGAAGTGCCTTGTGGAGAAGCTGTTTGGCTTCTTGGGGAGCTTGCTCACTACCTGCTCTTCCGACGTGCCGTTACTCAGAGGTGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53904173 189 +  58131712 TTTTT-AATGCTTGTCGTTTTAAATTGTCTTTTATCAGATCTTAGCTGTGCATTTATTGCAAGCAGTCCTTCCGTCATGGGACAAGACCGAAAGGGCGAGGGACATGAAGTGCCTTGTGGAGAAGCTGTTTGGCTTCTTGGGGAGCTTGCTCACTACCTGCTCTTCCGACGTACCGTTACTCAGAGGTGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       524616 189 -   3636681 TTTTT-AATGCTTGTCGTTTTAAATTGTCTTTTATCAGATCTTAGCTGTGCATTTATTGCAAGCAGTCCTTCCGTCATGGGACAAGACCGAAAGGGCGAGGGACATGAAGTGCCTTGTGGAGAAGCTGTTTGGCTTCTTGGGGAGCTTGCTCACTACCTGCTCTTCCGACGTGCCGTTACTCAGAGGTGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       504209 190 -   4457520 TTTTTAAATGCTTGTCGTTTTAAATTGTCTTTTATCAGATCTTAGCTGTGCATTTATTGCAAGCAGTCCTTCCGTCATGGGACAAGACCGAAAGGGCGAGGGACATGAAGTGCCTTGTGGAGAAGCTGTTTGGCTTCTTGGGGAGCTTGCTCACTACCTGCTCTTCCGACGTGCCCTTACTCAGAGGTGG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154534842 188 - 158406734 TTTTT-AATGCTTGCCATTTTAAATTGTCTTTT-TCAGATCTTAGCTGTACATTTACTGCAAGCAGTCCTTCCCTCGTGGGACAAGACCGAAAGGGCCAGGGACATGAAGTGCCTTGTGGAGAAGCTGTTCAGCTTCTTGGGGAGCTTGCTCACTACCTGCTCCTCCGACGTGCCGTTGCTCAGAGGTCG
i calJac3.chr6              C 0 T 20
s saiBol1.JH378292             367325 188 -   2682657 TTGTT-AATGCTTGCCATTTTAAATCGTCTTTT-TCAGATCTTAGCTGTACATTTACTGCAAGCAGTCCTTCCATCGTGGGACAAGACGGAAAGGGCACGGGACATGAAGTGCCTCGTGGAGAAGCTGTTCAGCTTCTTGGGGGGCCTGCTCACCACCTGTTCCTCCGACGTGCCGTTGCTCAGAGGTGG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       393522 188 -   2086007 TTTTT-AATGCTTGCCCTTTTAAATTATCTTTT-TCAGATCTTAGCTGTACATTTATTGCAAGCAGTCCTTCCGTCGTGGGACAAGACCGAAAGGGCAAGGGACATGAAGTGCCTTGTGGAGAAGCTGTTCAGCTTCTTGGGGAGCTTGCTCACTACTTGCTCCTCCGACGTGCCGTTGCTCAAAGGTGG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       454394 188 +   3831555 TTTTT-AATGCTTGCCATTTTAAATTGTCTTTT-TCAGATCTTAGCTGTACATTTATTGCAAGCAGTCCTTCCATCGTGGGACAAGACCGAAAGGGCAAGGGACATGAAGTGCCTTGTGGAGAAGCTGTTCAGCTTCTTGGGGAGCTTGCTCACTACCTGCTCCTCTGACGTGCCACTGCTCAGAGGTGG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13526559 189 +  16154928 TTTTT-AATGCTTGTCGTTGTGAATTATCTTTTCTCAGATCTTGGCTGTGCACTTATTGCAAGCAGTGCTCCCATCGTGGGACAAGACAGAAAGGGCAGGGGACATGAAGTGCCTTGTGGAAAAGCTGTTTGGCTTCTTGGGCAGTTTGCTCACTACCTGTTCTTCTGACGTGCCGTTACTCAGAGGTGG
i proCoq1.NW_012148396v1    I 40 C 0
s otoGar3.GL873689             475168 187 +   3845361 TTTTT-AATGCTTGTCATTGTGGATTGTC--TTATCAGATCTTGGCTGTGCACTTACTACAAGCAGTCCTCCCGTCATGGGACAAGGCAGAGAGGGCAGGGGACATGAAGTGCCTTGTGGAGAAGCTGTTTGGCTTCTTGGGCAGTCTGCTCACTACCTGTTCTTCTGATGTGCCCTTGCTCAGAGGTGG
i otoGar3.GL873689          I 1 C 0
s mm10.chr7                  56153008 187 + 145441459 -TTTT-AA-AATTGTCATTTTGTGTTGTCTCTGATCAGATCTTAGCTGTTCATTTGCTACAAGCAGTTCTTCCATCATGGGACAAGACAGAAAGGGCACGGGACATGAAGTGTCTTGTGGAAAAGCTGTTTGGCTTCTTGGGCAGTTTGCTTACTACTTGTTCTTCTGATGTTCCGTTACTTAGAGGTGA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60053836 189 -  91889043 TCTTT-AATGTTTGCCATTTTAAATTGCCTTTTATCAGATCTTAGCTGTGCATTTACTGCAAGCAGTGCTTCCATCATGGGACAAGACTGAAAGGGCAAGGGATATGAAGTGCCTTGTGGAAAAGCTGTTTGGTTTCCTGGGCAGCTTACTTACCACCTGTTCTTCAGATATCCCATTCCTCAGAGGTGG
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             438131 189 +    563711 TCCTT-AATGCTTGGCATTTTAAATTGTCTTCTATTAGATCTTAGCTGTACATTTACTGCAAGCAGTGCTTCCTTCCTGGGACAAGGCTGAGCGGTCAAGGGACATGAAATGCCTTGTGGAGAAACTGTTTGGCTTCTTGGGCAGCTTGCTTACTACTTGTTCTTCGGATATCCCTCTGCTCAGAGGTAG
i dasNov3.JH562051          C 0 C 0
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=4500.000000
s hg38.chr15_KI270851v1_alt    205155 1 +    263054 G
s panTro5.chr15               9592373 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74126035 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       169982 1 -    281578 G
i gorGor5.CYUI01000141v1    C 0 C 0
s chlSab2.chr26              53904362 1 +  58131712 G
i chlSab2.chr26             C 0 C 0
s proCoq1.NW_012148396v1     13526748 1 +  16154928 G
i proCoq1.NW_012148396v1    C 0 I 62
s otoGar3.GL873689             475355 1 +   3845361 G
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56153195 1 + 145441459 G
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60054025 1 -  91889043 G
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             438320 1 +    563711 G
i dasNov3.JH562051          C 0 C 0
e aotNan1.NW_018503298v1       454582 0 +   3831555 C
e cebCap1.NW_016107707v1       393710 0 -   2086007 C
e nomLeu3.chr6               71027480 6354 + 121039945 M
e colAng1.NW_012115278v1       504399 0 -   4457520 C
e manLeu1.NW_012102332v1       524805 0 -   3636681 C
e cerAty1.NW_012001462v1       472077 0 +   4116138 C
e macNem1.NW_012011934v1       515315 0 +   2379783 C
e rheMac8.chr7              164339546 0 - 169600520 C
e saiBol1.JH378292             367513 0 -   2682657 C
e calJac3.chr6              154535030 20 - 158406734 T
e macFas5.chr7              165660509 20 - 171882078 T

a score=14420.000000
s hg38.chr15_KI270851v1_alt    205156 36 +    263054 TGGCCGT-CTCCCTTCCCTGTACCCTGGTGAAGAGCG
s panTro5.chr15               9592374 36 +  83230942 TGGCCGT-CTCCCTTCCCTGTGCCCTGGTGAAGAGCG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74126036 36 -  99763055 TGGCCGT-CTCCCTTCCCTGTGCCCTGGTGAAGAGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       169983 36 -    281578 TGGCCGT-CTCCCTTCCCTGTACCCTGGTGAAGAGCG
i gorGor5.CYUI01000141v1    C 0 C 0
s chlSab2.chr26              53904363 36 +  58131712 TGGCTGT-CTCCCTTCCCCGTGCCCTGGTGAAGAGCG
i chlSab2.chr26             C 0 C 0
s otoGar3.GL873689             475356 20 +   3845361 TGGCTCT-CTTCCCTGCCTGT----------------
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56153196  7 + 145441459 TGGCTGT------------------------------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60054026  4 -  91889043 CAGC---------------------------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             438321 15 +    563711 -----GTGCTCTCCTCCGTG-----------------
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13526749 62 +  16154928 I
e aotNan1.NW_018503298v1       454582  0 +   3831555 C
e cebCap1.NW_016107707v1       393710  0 -   2086007 C
e nomLeu3.chr6               71027480 6354 + 121039945 M
e colAng1.NW_012115278v1       504399  0 -   4457520 C
e manLeu1.NW_012102332v1       524805  0 -   3636681 C
e cerAty1.NW_012001462v1       472077  0 +   4116138 C
e macNem1.NW_012011934v1       515315  0 +   2379783 C
e rheMac8.chr7              164339546  0 - 169600520 C
e saiBol1.JH378292             367513  0 -   2682657 C
e calJac3.chr6              154535030 20 - 158406734 T
e macFas5.chr7              165660509 20 - 171882078 T

a score=2553.000000
s hg38.chr15_KI270851v1_alt    205192 5 +    263054 GTGCA
s panTro5.chr15               9592410 5 +  83230942 GCGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74126072 5 -  99763055 GCGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       170019 5 -    281578 GCGCA
i gorGor5.CYUI01000141v1    C 0 C 0
e mm10.chr7                  56153203 0 + 145441459 C
e proCoq1.NW_012148396v1     13526749 62 +  16154928 I
e dasNov3.JH562051             438336 0 +    563711 C
e canFam3.chr3               60054030 0 -  91889043 C
e aotNan1.NW_018503298v1       454582 0 +   3831555 C
e otoGar3.GL873689             475376 0 +   3845361 C
e cebCap1.NW_016107707v1       393710 0 -   2086007 C
e nomLeu3.chr6               71027480 6354 + 121039945 M
e colAng1.NW_012115278v1       504399 0 -   4457520 C
e manLeu1.NW_012102332v1       524805 0 -   3636681 C
e cerAty1.NW_012001462v1       472077 0 +   4116138 C
e macNem1.NW_012011934v1       515315 0 +   2379783 C
e rheMac8.chr7              164339546 0 - 169600520 C
e chlSab2.chr26              53904399 0 +  58131712 C
e saiBol1.JH378292             367513 0 -   2682657 C
e calJac3.chr6              154535030 20 - 158406734 T
e macFas5.chr7              165660509 20 - 171882078 T

a score=42953.000000
s hg38.chr15_KI270851v1_alt    205197 62 +    263054 GTGCCGTCACTCAGAGGTGGGTGGCCGTCTCCCT-TCCCTGTGTCCTGGTGAAGAGCGGTGCA
s panTro5.chr15               9592415 60 +  83230942 GTGCCGTCACTC--AGGTGGGTGGCCGTTTCCCT-TCCCTGTGCCCTGGTGAAGAGCGGCGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74126077 60 -  99763055 GTGCCGTCACTC--AGGTGGGTGGCCGTTTCCCT-TCCCTGTGCCCTGGTGAAGAGCGGCGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       170024 60 -    281578 GTGCCGTCACTC--AGGTGGGTGGCCGTTTCCCT-TCCCTGTGCCCTGGTGAAGAGTGGCGCA
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              165660489 62 - 171882078 GTGCCGTTACTCAGAGGTGGGTGGCTGTCTCCCT-TCCCCGTGCCCTGGTGAGGAGCGGCGTA
i macFas5.chr7              T 20 T 62
s calJac3.chr6              154535010 62 - 158406734 GTGCCGTTGCTCAGAGGTCGGTAACCGTCTCCCT-TCCCTGTGCCCTGGGGGAGAGCAGGGCA
i calJac3.chr6              T 20 T 62
s otoGar3.GL873689             475376 21 +   3845361 -------------GAGGTGGTTGG----------------------------AGAGCGGTGC-
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60054030 29 -  91889043 ---------------------------TCTCCTTATTTGTGTGAACTGATGAAGTG-------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             438336 13 +    563711 -------------------------------------CCTGTGTCCTAAC-------------
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56153203  0 + 145441459 C
e proCoq1.NW_012148396v1     13526749 62 +  16154928 I
e aotNan1.NW_018503298v1       454582  0 +   3831555 C
e cebCap1.NW_016107707v1       393710  0 -   2086007 C
e nomLeu3.chr6               71027480 6354 + 121039945 M
e colAng1.NW_012115278v1       504399  0 -   4457520 C
e manLeu1.NW_012102332v1       524805  0 -   3636681 C
e cerAty1.NW_012001462v1       472077  0 +   4116138 C
e macNem1.NW_012011934v1       515315  0 +   2379783 C
e rheMac8.chr7              164339546  0 - 169600520 C
e chlSab2.chr26              53904399  0 +  58131712 C
e saiBol1.JH378292             367513  0 -   2682657 C

a score=24563.000000
s hg38.chr15_KI270851v1_alt    205259 20 +    263054 GTGCCGTCACTCAGAGGTGG
s panTro5.chr15               9592475 20 +  83230942 GTGCCGTCACTTAGAGGTGG
i panTro5.chr15             C 0 T 62
s panPan2.chr15              74126137 20 -  99763055 GTGCCGTCACTCAGAGGTCG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       170084 20 -    281578 GTGCCGTCACTCAGAAGTGG
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              165660489 20 - 171882078 GTGCCGTTACTCAGAGGTGG
i macFas5.chr7              T 62 C 0
s calJac3.chr6              154535010 20 - 158406734 GTGCCGTTGCTCAGAGGTCG
i calJac3.chr6              T 62 C 0
s mm10.chr7                  56153203 11 + 145441459 --GCCTTTACTCA-------
i mm10.chr7                 C 0 C 0
e proCoq1.NW_012148396v1     13526749 62 +  16154928 I
e dasNov3.JH562051             438349  0 +    563711 C
e canFam3.chr3               60054059  0 -  91889043 C
e aotNan1.NW_018503298v1       454582  0 +   3831555 C
e otoGar3.GL873689             475397  0 +   3845361 C
e cebCap1.NW_016107707v1       393710  0 -   2086007 C
e nomLeu3.chr6               71027480 6354 + 121039945 M
e colAng1.NW_012115278v1       504399  0 -   4457520 C
e manLeu1.NW_012102332v1       524805  0 -   3636681 C
e cerAty1.NW_012001462v1       472077  0 +   4116138 C
e macNem1.NW_012011934v1       515315  0 +   2379783 C
e rheMac8.chr7              164339546  0 - 169600520 C
e chlSab2.chr26              53904399  0 +  58131712 C
e saiBol1.JH378292             367513  0 -   2682657 C

a score=3471.000000
s hg38.chr15_KI270851v1_alt    205279  43 +    263054 GTGGCCGTCTCCCTTCCCTGTACCCTGGTGAAGAGC------------------------------------------------------------GGTGCAG
s panTro5.chr15               9592433  43 +  83230942 GTGGCCGTTTCCCTTCCCTGTGCCCTGGTGAAGAGC------------------------------------------------------------GGCGCAG
i panTro5.chr15             T 62 C 0
s panPan2.chr15              74126157 102 -  99763055 GT-GCCGTCTCCCTTCCCTGTGCCCTGGTGAAGAGCGGTGTAGTGCCGTCACTCAGAGGTGCGTGGCCGTCTCCTTCCCTGTGCCTGGTGAAGAGTGGTGCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       170104  43 -    281578 GTGGCCGTCTCCCTTCCCTGTGCCCTGGTGAAGAGC------------------------------------------------------------GGCGCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              165660509  43 - 171882078 GTGGCTGTCTCCCTTCCCCGTGCCCTGGTGAGGAGC------------------------------------------------------------GGCGTAG
i macFas5.chr7              C 0 T 62
s calJac3.chr6              154535030  43 - 158406734 GTAACCGTCTCCCTTCCCTGTGCCCTGGGGGAGAGC------------------------------------------------------------AGGGCAG
i calJac3.chr6              C 0 T 62
s otoGar3.GL873689             475397   9 +   3845361 ----------------------------------GC------------------------------------------------------------AGTGCAG
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56153214  14 + 145441459 -------------TTTCTTCTGTTCAG----------------------------------------------------------------------------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60054059   9 -  91889043 ---------------------------------AAC------------------------------------------------------------AGGGCA-
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             438349  18 +    563711 ----------------CCCATGTACAA---------------------------------------------------------------------TGTGCAG
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13526749  62 +  16154928 I
e aotNan1.NW_018503298v1       454582   0 +   3831555 C
e cebCap1.NW_016107707v1       393710   0 -   2086007 C
e nomLeu3.chr6               71027480 6354 + 121039945 M
e colAng1.NW_012115278v1       504399   0 -   4457520 C
e manLeu1.NW_012102332v1       524805   0 -   3636681 C
e cerAty1.NW_012001462v1       472077   0 +   4116138 C
e macNem1.NW_012011934v1       515315   0 +   2379783 C
e rheMac8.chr7              164339546   0 - 169600520 C
e chlSab2.chr26              53904399   0 +  58131712 C
e saiBol1.JH378292             367513   0 -   2682657 C

a score=41739.000000
s hg38.chr15_KI270851v1_alt    205322 55 +    263054 TGCCGTCACTCAGAGGTGGGTGGCCGTCTCCCTTCCCTGTGTCCTGGTGAAGAGC
s panTro5.chr15               9592476 55 +  83230942 TGCCGTCACTTAGAGGTGGGTGGCCGTCTCCCTTCCCTGTGCCCTGGTGAAGAGC
i panTro5.chr15             C 0 T 36
s panPan2.chr15              74126259 55 -  99763055 TGCCGTCACTCAGAGGTGGGTGGCCGTCTCCCTTCCCTGTGCCCTGGTGAAGAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       170147 55 -    281578 TGCCGTCACTTAGAGGTGGGTGGCCGTCTCCCTTCCCTGTGCCCTGGTGAAGAGC
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              165660490 55 - 171882078 TGCCGTTACTCAGAGGTGGGTGGCTGTCTCCCTTCCCCGTGCCCTGGTGAGGAGC
i macFas5.chr7              T 62 C 0
s calJac3.chr6              154535011 55 - 158406734 TGCCGTTGCTCAGAGGTCGGTAACCGTCTCCCTTCCCTGTGCCCTGGGGGAGAGC
i calJac3.chr6              T 62 T 36
s mm10.chr7                  56153228  5 + 145441459 --------------------------------------------------TGAGC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60054068  1 -  91889043 ------------------------------------------------------C
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             438367  5 +    563711 ---------------------------------------TGCAC-----------
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13526749 62 +  16154928 I
e aotNan1.NW_018503298v1       454582  0 +   3831555 C
e otoGar3.GL873689             475406  0 +   3845361 C
e cebCap1.NW_016107707v1       393710  0 -   2086007 C
e nomLeu3.chr6               71027480 6354 + 121039945 M
e colAng1.NW_012115278v1       504399  0 -   4457520 C
e manLeu1.NW_012102332v1       524805  0 -   3636681 C
e cerAty1.NW_012001462v1       472077  0 +   4116138 C
e macNem1.NW_012011934v1       515315  0 +   2379783 C
e rheMac8.chr7              164339546  0 - 169600520 C
e chlSab2.chr26              53904399  0 +  58131712 C
e saiBol1.JH378292             367513  0 -   2682657 C

a score=1092.000000
s hg38.chr15_KI270851v1_alt    205377 7 +    263054 CGTGTAG
s panPan2.chr15              74126314 7 -  99763055 AGCGCAG
i panPan2.chr15             C 0 C 0
s macFas5.chr7              165660545 7 - 171882078 GGCGTAG
i macFas5.chr7              C 0 T 43
s mm10.chr7                  56153233 6 + 145441459 AGTGTG-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60054069 7 -  91889043 CATGTAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             438372 7 +    563711 TGTACAG
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13526749 62 +  16154928 I
e aotNan1.NW_018503298v1       454582 0 +   3831555 C
e otoGar3.GL873689             475406 0 +   3845361 C
e cebCap1.NW_016107707v1       393710 0 -   2086007 C
e nomLeu3.chr6               71027480 6354 + 121039945 M
e panTro5.chr15               9592531 36 +  83230942 T
e gorGor5.CYUI01000141v1       170202 0 -    281578 C
e colAng1.NW_012115278v1       504399 0 -   4457520 C
e manLeu1.NW_012102332v1       524805 0 -   3636681 C
e cerAty1.NW_012001462v1       472077 0 +   4116138 C
e macNem1.NW_012011934v1       515315 0 +   2379783 C
e rheMac8.chr7              164339546 0 - 169600520 C
e chlSab2.chr26              53904399 0 +  58131712 C
e saiBol1.JH378292             367513 0 -   2682657 C
e calJac3.chr6              154535066 36 - 158406734 T

a score=-788.000000
s hg38.chr15_KI270851v1_alt    205384 19 +    263054 TGCCGTCACTCAGAGGTGA
s panPan2.chr15              74126321 19 -  99763055 TGCCGTCACTCAGAGGTGC
i panPan2.chr15             C 0 C 0
s mm10.chr7                  56153239  6 + 145441459 ---CGTCAC----------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60054076  4 -  91889043 ---CTCC------------
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13526749 62 +  16154928 I
e dasNov3.JH562051             438379  0 +    563711 C
e aotNan1.NW_018503298v1       454582  0 +   3831555 C
e otoGar3.GL873689             475406  0 +   3845361 C
e cebCap1.NW_016107707v1       393710  0 -   2086007 C
e nomLeu3.chr6               71027480 6354 + 121039945 M
e panTro5.chr15               9592531 36 +  83230942 T
e gorGor5.CYUI01000141v1       170202  0 -    281578 C
e colAng1.NW_012115278v1       504399  0 -   4457520 C
e manLeu1.NW_012102332v1       524805  0 -   3636681 C
e cerAty1.NW_012001462v1       472077  0 +   4116138 C
e macNem1.NW_012011934v1       515315  0 +   2379783 C
e rheMac8.chr7              164339546  0 - 169600520 C
e chlSab2.chr26              53904399  0 +  58131712 C
e saiBol1.JH378292             367513  0 -   2682657 C
e calJac3.chr6              154535066 36 - 158406734 T
e macFas5.chr7              165660552 43 - 171882078 T

a score=191520.000000
s hg38.chr15_KI270851v1_alt    205403 40 +    263054 GTGGCCGTCTCCCTTCCCTGTGCCCTGGTGAAGAGTGGTG
s panTro5.chr15               9592495 40 +  83230942 GTGGCCGTCTCCCTTCCCTGTGCCCTGGTGAAGAGCGGTG
i panTro5.chr15             T 36 C 0
s panPan2.chr15              74126340 40 -  99763055 GTGGCCGTCTCCCTTCCCTGTGCCCTGGTGAAGAGCGGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       170202  4 -    281578 ------------------------------------GGTG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164339546 40 - 169600520 GTGGCTGTCTCCCTTCCCCGTGCCCTGGTGAGGAGCGGCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165660509 40 - 171882078 GTGGCTGTCTCCCTTCCCCGTGCCCTGGTGAGGAGCGGCG
i macFas5.chr7              T 43 C 0
s macNem1.NW_012011934v1       515315 40 +   2379783 GTGGCTGTCTCCCTTCCCCGTGCCCTGGTGAGGAGCAGCG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       472077 40 +   4116138 GTGGCTGTCTCCCTTCCCCGTGCCCTGCTGAAGAGCGGCG
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       524805 40 -   3636681 GTGACTGTCTCCCTTCCCCGTGCCCTGGTGAAGAGCGGCG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       504399 40 -   4457520 GTGGCAGCCTCCCTTCCCTGTGCCCTGGTGACGAGCGGCG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154535030 40 - 158406734 GTAACCGTCTCCCTTCCCTGTGCCCTGGGGGAGAGCAGGG
i calJac3.chr6              T 36 C 0
s saiBol1.JH378292             367513 39 -   2682657 GTAG-CGGCTCCCTTCCCTGTGCCCTGGGGAAGAGCAGGG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       393710 40 -   2086007 GTAACCGTCTCCCTTCCCTGTGCCCTGGGGAAGAGCAGGG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       454582 40 +   3831555 GTAACCGTCTCCCTTCCCTGTGCCCTGGGGAAGAGCAGGG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             475406 10 +   3845361 ------------CTTCTCTGTG------------------
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60054080 10 -  91889043 -------TCTCTCATAC-----------------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             438379 12 +    563711 -----------CTTGCCTTGTGC-----------------
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56153245  0 + 145441459 C
e proCoq1.NW_012148396v1     13526749 62 +  16154928 I
e nomLeu3.chr6               71027480 6354 + 121039945 M
e chlSab2.chr26              53904399  0 +  58131712 C

a score=131443.000000
s hg38.chr15_KI270851v1_alt    205443 19 +    263054 CAGCAGCTTCTCCCCTGGT
s panTro5.chr15               9592535 19 +  83230942 CAGCAGCTTCTCCCCTGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74126380 19 -  99763055 CAGCAGCTTCTCCCCTGGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       170206 19 -    281578 CAGCAGCTTCTCCCCTGGT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164339586 19 - 169600520 CAGCAGCTCCTCCCCTTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165660549 19 - 171882078 TAGCAGCTCCTCCCCTTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       515355 19 +   2379783 CAGCAGCTCCTCCCCTTGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       472117 19 +   4116138 CAGCAGCTCCTCCCCTTGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53904399 19 +  58131712 CAGCAGCTCCTCCCCTTGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       524845 19 -   3636681 CAGCAGCTCCTCCCCTTGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       504439 19 -   4457520 CGGCAGCTCCTCCCCTTGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154535070 18 - 158406734 CAGCAGCTTCTCCCAT-GT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             367552 18 -   2682657 CAGCAGCTTCTCCCGT-GT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       393750 18 -   2086007 CAGCAGCTTCTCCCAT-GT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       454622 18 +   3831555 CAGCAGCTTCTCCCAT-GT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             475416  1 +   3845361 ------------------T
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56153245 10 + 145441459 ----AGCTTTTCTC-----
i mm10.chr7                 C 0 C 0
e proCoq1.NW_012148396v1     13526749 62 +  16154928 I
e dasNov3.JH562051             438391  0 +    563711 C
e canFam3.chr3               60054090  0 -  91889043 C
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=3191381.000000
s hg38.chr15_KI270851v1_alt    205462 216 +    263054 TTCCTCCTCAGAGTCCACGCTGAGGCGGCGCAGGGTGTGCCCGCAGGCCTCGCTGACTGCCACCCACAGCAGCACACTGGCGGAGGAGGTGGTGGCACTGCTGCACACGCTGCACTCCCTGACTCGGTGGAATGGGCTCATCAACAAGTACATCAACTTCCAGCTCCGCTCCATCACCCACAGCTTTGCGGGAAGGCCTTCCAAAGGGGTGGGTTT
s panTro5.chr15               9592554 216 +  83230942 TTCCTCCTCAGAGTCCACGCTGAGGCGGCGCAGGCTGCGCCCGCAGGCCTCGCTGACTGCCACCCACAGCAGCACACTGGCGGAGGAGGTGGTGGCACTGCTGCGCACGCTGCACTCCCTGACTCAGTGGAATGGGCTCATCAACAAGTACATCAACTCCCAGCTCCGCTCCATCACCCATAGCTTTGCGGGAAGGCCTTCCGAAGGGGTGGGTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74126399 216 -  99763055 TTCCTCCTCAGAGTCCACGCTGAGGCGGCGCAGGGTGCGCCCGCAGGCCCCGCTGACTGCCACCCACAGCAGCACACTGGCGGAGGAGGTGGTGGCACTGCTGCGCACGCTGCACTCCCTGACTCAGTGGAATGGGCTCATCAACAAGTACATCAACTCCCAGCTCCGCTCCATCACCCACAGCTTTGCGGGAAGGCCTTCCGAAGGGGTGGGTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       170225 216 -    281578 TTCCTCCTCAGAGTCCACGCTGAGGCGGCGCAGGCTGCGCCCGCAGGCCTCGCTGACTGCCACCCACAGCAGCACACTGGCGGAGGAGGTGGTGGCACTGCTGCGCACGCTGCACTCCCTGACTCAGTGGAATGGGCTCATCAACAAGTACATCAACTCCCAGCTCCGCTCCATCACCCACAGCTTTGCGGGAAGGCCTTCCGAAGGGGTGGGTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164339605 216 - 169600520 TTCCTCCGCAGAGTCCACGCCCAGGCGGCGCAGGGCGCGCCCGCAGGCCTCGCTGACCGCCACGCACAGCAGCACACTGGCGGAGGAGGTGGTGGCGCTGCTGCGCACGCTGCACTCGCTGACTCAGTGGAACGGGCTCATCAACAAGTACATCAACTCCCAGCTCCGCTGCGTCACCCACAGCTTTGCAGGAAGGCCTTCCGAAGGGGTGGGTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165660568 216 - 171882078 TTCCTCCGCAGAGTCCACGCCCAGGCGGCGCAGGGCGCGCCCGCAGGCCTCGCTGACCGCCACGCACAGCAGCACACTGGCGGAGGAGGTGGTGGCGCTGCTGCGCACGCTGCACTCGCTGACTCAGTGGAACGGGCTCATCAACAAGTACATCAACTCCCAGCTCCGCTGCGTCACCCACAGCTTTGCAGGAAGGCCTTCCGAAGGGGTGGGTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       515374 216 +   2379783 TTCCTTCGCAGAGTCCACGCCCAGGCGGCGCAGGGCGCGCCCGCAGGCCTCGCTGACCGCCACGCACAGCAGCACACTGGCGGAGGAGGTGGTGGCGCTGCTGCGCACGCTGCACTCGCTGACTCAGTGGAACGGGCTCATCAACAAGTACATCAACTCCCAGCTCCGCTGCGTCACCCACAGCTTTGCAGGAAGGCCTTCCGAAGGGGTGGGTTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       472136 216 +   4116138 TTCCTCCGCAGAGTCCACGCCCAGGCGGCGCAGGGCGCGCCCGCAGGCCTCGCTGACCGCCACGCACAGCAGCACGCTGGCGGAGGAGGTGGTGGCGCTGCTGCGCACGCTGCACTCGCTGACTCAGTGGAACGGGCTCATCAACAAGTACATCAACTCCCAGCTCCGCTGCGTCACCCACAGCTTTGCAGGAAGGCCTTCCGAAGGGGTGGGTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53904418 216 +  58131712 TTCCTCCGCAGAGTCCACGCCCAGGCGGCGCAGGGCGCGCCCGCAGGCCTCGCTGACCGCCACGCACAGCAGCACACTGGCGGAGGAGGTGGTGGCGCTGCTGCGCTCGCTGCACTCGCTGCCTCAGTGGAACGGGCTCATCAACAAGTACATCAACTCCCAGCTCCGCTGCGTCACCCACAGCTTTGCAGGAAGGCCTTCCGAAGGGGTGGGTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       524864 216 -   3636681 TTCCTCCGCAGAGTCCACGCCCAGGCGGCGCAGGGCGCGCCCGCAGGCCTCGCTGACCGCCACGCACAGCAGCACACTGGCGGAGGAGGTGGTGGCGCTGCTGCGCACGCTGCACTCGCTGACTCAGTGGAACGGGCTCATCAACAAGTACATCAACTCCCAGCTCCGCTGCGTCACCCACAGCTTTGCAGGAAGGCCTTCCGAAGGGGTGGGTTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       504458 216 -   4457520 TTCCTCCTCAGAGTCCACGCCCCGGCGGCGCAGGGCGCGCCCGCAGGCCTCGCTGACCGCCACGCACAGCAGCACCCTGGCGGAGGAGGTGGTGGCGCTGCTGCGCACGCTGCACTCGCTGACTCAGTGGAACGGGCTCATCAACAAGTACATCAACTCCCAGCTCCGCTCCGTCACCCACAGCTTTGCAGGAAGGCCTTCCGAAGGGGTGGGTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154535088 216 - 158406734 TTCCTCCTCAGAGTCCACACAGAGGCGGCGCCGGGCACGCCCACAGGCCTCACTGACCGCCACCCACAGCAGCACACTGGCGGAGGAGGTGGTGGCGCTGCTGCGCGTGCTGCACTCCCTGACGCAGTGGAATGGACTCATCAACAAGTACATCAACTCCCAGCTCCGCTCCATCACCCACAGCTTCGCAGGAAGGCCGTCTGAAGGGGTGGGTGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             367570 216 -   2682657 TTCCCCCTCAGAGTCCACACCGAGGCGGCGCAGGGCACGCCCGCAGGCCTCGCTGACTGCCACCCACAGCAGCACGCTGGCCGAGGAGGTGGTGGCCCTGCTGCGTGTGCTGCACTCCCTGGCGCAGTGGAACGGGCTCATCAACAAGTACATCAACTCCCAGCTGCGCTCCATCACCCACAGCTTCGCGGGAAGGCCGTCTGAAGGGGTGGGTTT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       393768 216 -   2086007 TGCCTCCTCAGAGTCCACACCGAGGCGGCGCCGGGCACGCCCACAGGCCTCGCTGACCGCCACCCACAGCAGCACACTGGCCGAGGAGGTGGTGGCCCTGCTGCGCGTGCTGCACTCCCTGGCGCAGTGGAATGGGCTGATCAACAAGTACATCAACTCCCAGCTGCGCTCCATCACCCACAGCTTCGCGGGAAGGCCGTCTGAAGGGGTGGGTTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       454640 216 +   3831555 TTCCTCTTCAGAGTCCACACTGAGGCGGCGCAGGGCACGCCCACAGGCCTCGCTGACCGCCACCCACAGCAGCACACTGGCGGAGGAGGTGGTGGCACTGCTGCGCGTGCTGCACTCCCTGACGCAGTGGAATGGGCTCATCAACAAGTACATCAACTCCCAGCTCCGCTCTATCACCCACAGCTTCGCGGGAAGGCCGTCTGAAGGGGTGGGTTT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13526811 216 +  16154928 TTCTTCCTCAGAGTCCACGCTGAGGAGGCGCAGGGCCCGCCCGCAGGCCTCGCTGACCGCCACCCACAGCAGCACTCTGGCAGAAGAGGTGGTGGCTCTGCTCCGCACGCTGCACTCCCTGACCCAGTGGAACGGACTCATCAACAAGTATATCAACTCCCAGCTCCGCCTGGTTACCCACAGCTGCTCAGGAAAGCCGTCGGAGGGGGTGGGTTC
i proCoq1.NW_012148396v1    I 62 C 0
s otoGar3.GL873689             475417 216 +   3845361 TTCTTCCTCAGAGTCCATGCTGAGGAGGCGCAGGGCCCGCCCGCAGGCCTCGCTGACTGCCACCCACAGCAGCACACTGGCGGAGGAGGTGGTGGCACTGCTTCGCACACTGCACTCCCTGCCCCAGTGGAACGGGCTCATCAATAAGTACATCAACTCCCAGCTCCGCCTGGTCACGCACAGCTGCTCGGGAAAGCTGTCGGAGGGGGTGGGTTC
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56153255 215 + 145441459 -TCTGCTTCAGAATCCACGTTGAGAAAGCGGAGGGCCCGGCCCCAGGCTTCCTTGACTGCCACCCACAGCAGCACGCTGGCTGAAGAAGTGGTGGGGCTGCTCCGCACTCTGCACTCCCTGACCCAGTGGAATGGCCTCATCAACAAATACATTAACTCCCAGCTTTGCTCTGTCACACAAAGCTATGCCGGAAAGACATCAGAAAGGGTGTGTTT
i mm10.chr7                 C 0 I 1
s canFam3.chr3               60054090 216 -  91889043 TTCTCTTTCAGAATCTACTCTGAGGCGGCGGAGGGCACGCCCACAGGCCTCTCTGACTGCCACCCATAGCAGCACCCTGGCAGAAGAGGTGGTGGCACTGCTGCGCACACTTCACTCCCTGGGCCAGTGGAATGGACTCATCAACAAGTACATCAACTCTCAGCTCCACTCGGTCACCCGCAGCTGCACAGGAAAGCCATCAGAGGGGGTGGGTGC
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             438391 214 +    563711 TTCTT--TCAGAGTCCACTCTGAGGAGGAGGAGGGCCCGGCCCCAGGCCTCGCTGACTGCCACACACAGCAGCACACTAGCAGAGGAGGTGGTGGCCCTGCTCAGGACGCTGCACTCACTGAGCCAGTGGAACGGACTCATAAACAAGTACATCAACTCTCAGCTCCACTCCGTCACCCCCAGCTTTGCAGGAAAGCAGTCTGAAGGGGTAGTTTC
i dasNov3.JH562051          C 0 I 103
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=36908.000000
s hg38.chr15_KI270851v1_alt    205678  9 +    263054 GTGTTCTCA------------------------------
s panTro5.chr15               9592770  9 +  83230942 GTGTTCTCA------------------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74126615  9 -  99763055 GTGTTCTCA------------------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       170441  9 -    281578 GTGTTCTCA------------------------------
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164339821  9 - 169600520 GTGCACTCA------------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165660784  9 - 171882078 GTGCACTCA------------------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       515590  9 +   2379783 GTGCACTCA------------------------------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       472352  9 +   4116138 GTGCGCTCA------------------------------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53904634  9 +  58131712 GTGCGCTCA------------------------------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       525080  9 -   3636681 GTGCGCTCA------------------------------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       504674  9 -   4457520 GTGCGCTCA------------------------------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154535304  9 - 158406734 GTGTTCTCA------------------------------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             367786  9 -   2682657 GTGTTCTCA------------------------------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       393984  9 -   2086007 GTGTTCTCA------------------------------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       454856  9 +   3831555 GTGTTCTCA------------------------------
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13527027  9 +  16154928 TGCTTGTCA------------------------------
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             475633  4 +   3845361 CGCT-----------------------------------
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56153471  9 + 145441459 ATGTTTTCA------------------------------
i mm10.chr7                 I 1 I 226
s canFam3.chr3               60054306  9 -  91889043 CACTTTTCA------------------------------
i canFam3.chr3              C 0 I 102
s dasNov3.JH562051             438708 39 +    563711 GTGTTTTTCTGGAAATAATTATTGAAGAAATTAAACTAA
i dasNov3.JH562051          I 103 C 0
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=534432.000000
s hg38.chr15_KI270851v1_alt    205687 57 +    263054 GAATTAATT----------------------TAGTTGAACAGTAAA-----CCTGTAGGGATTGGGCAGCTCCGTGAGTGTCCC
s panTro5.chr15               9592779 57 +  83230942 GAATTAATT----------------------TAGTTGAACAGTAAA-----CCTGTAGGGATTGGGCAGCTCCGTGAGTGTCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74126624 57 -  99763055 GAATTAATT----------------------TAGTTGAACAGTAAA-----CCTGTAGGGATTGGGCAGCTCCGTGAGTGTCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       170450 57 -    281578 GAATTAATT----------------------TAGTTCAACGGTAAA-----CCTGTAGGGATTGGGCAGCTCCGTGAGTGTCTC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164339830 57 - 169600520 GAATTAATT----------------------TAGTTGAATGGTAAA-----CCCGTAGGGATTGGGCAGCCCCGTGCGTGTCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165660793 57 - 171882078 GAATTAATT----------------------TAGTTGAATGGTAAA-----CCCGTAGGGATTGGGCAGCCCCGTGCATGTCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       515599 57 +   2379783 GAATTAATT----------------------TAGTTGAATGGTAAA-----CCCGTAGGGATTGGGCAGCCCCGTGCGTGTCCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       472361 56 +   4116138 -AATTAATT----------------------TAGTTGAATGGTAAA-----CCCGTAGGGATTGGGCAGCCCCGTGCGTGTCCC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53904643 57 +  58131712 GAATTAGTT----------------------TAGTTGAATGGTAAA-----CCCGTAGGGATTGGGCAGCCCCGTGCGTGTCCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       525089 57 -   3636681 GAATTAATT----------------------TAGTTGAATGGTAAA-----CCCGTAGGGATTGGGCAGCCCCGTGCGTGTCCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       504683 57 -   4457520 GAATTAATG----------------------TAGTTGAATGGTGAA-----CCCGTAGGGACTGGGCAGCTCCGTGCGTGTCCC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154535313 57 - 158406734 GAATTAATT----------------------TGGTTGAACGGTACA-----CCTGTAGGGACTGGGCAGCTCCATGAATGTCCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             367795 50 -   2682657 GAATTCGTG----------------------TCGTTGAACGGTACA-----CCTGTAGGCACTGGGCAGCTCCATGA-------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       393993 57 -   2086007 GAATTCATT----------------------TAGTTGAACGGTAAA-----CCTGTAGGGACTGGGCAGCTCCATGAATGTCCC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       454865 57 +   3831555 GGATTAATT----------------------TGGTTGAACGGTAAA-----CCTGTAGGGACTGGGCAGCTCCATGAGTGTCCC
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13527036 57 +  16154928 AAATTAATC----------------------TAGTTTCATTGTAGA-----TTTGTGAGGAATGGGCAGCTCCGTGCACTTCCC
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             475637 44 +   3845361 ----------------------------------TTTCTCCGTAGA-----ATGATGAGGGCTGGGCAGC-ATGCGGACTCCCT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60054417 79 -  91889043 GAAATAACTATTGAAGAAACTAGTATAAAAATGGCTTAGCTGTAAA-----TGTGTAAGAAACAGGCAGCTCCCTGGGCTCTCT
i canFam3.chr3              I 102 C 0
s dasNov3.JH562051             438747 61 +    563711 AAATTAATT----------------------TAGCTTAATTGTAAATTACTCTTGTAAGAAATAGGCAGCTCTGTGGGCTTTC-
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56153480 226 + 145441459 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=4319844.000000
s hg38.chr15_KI270851v1_alt    205744 297 +    263054 CGGTCGAG-CTCGCTGTTTG----------------------------------------GTCTGCACTAGGCCCAGTTAGATGACTACTTCCCTGATTCCGAGAACCCTGAAGTGGGGGGCCTCATGGCGGTCCTGGCTGTGGTTGGAGGCATCGATGGTCGCCTGTGCCTGGGCGGCCAAGTTGTGCACGATGACTTTGGAGAAGTCACCATGACTCGCATCACCCTGAAGGGCAAAATCACCGTGCAGTTCTCTGACATGCGGACGTGTCGCGTTTGCCCATTGAATCAGCTGAAACCAGTAGGTGAACTTGTGCTTAGTTACTGCATGATAAGG
s panTro5.chr15               9592836 297 +  83230942 CGGTCGAG-CTCGCTGTTTG----------------------------------------GTCTGCACTAGGCCCAGTTAAAGGACTACTTCCCAGACTCCGAGAACCCTGAAGTGGGGGGCCTCATGGCGGTCCTGGCTGTGATTGGAGGCATCGATGGTCGCCTGCGCCTGGGCGGTCAAGTTATGCACGATGAGTTTGGAGAAGGCACCGTGACTCGCATCACCCCAAAGGGCAAAATCACTGTGCAGTTCTCTGACATGCGGACGTGTCGCGTTTGCCCATTGAATCAGCTGAAACCAGTAGGTGAACTTGTGCTTAGTTACTGCATGATAAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74126681 297 -  99763055 CGGTCGAG-CTCGCTGTTTG----------------------------------------GTCTGCACTAGGCCCAGTTAGAGGACTACTTCCCCGACTCCGAGAACCCTGAAGTGGGGGGCCTCATGGCGGTCCTGGCTGTGATTGGAGGCATCGATGGTCGCCTGCGCCTGGGCGGTCAAGTTATGCACGATGAGTTTGGAGAAGGCACCGTGACTCGCATCACCCCAAAGGGCAAAATCACTGTGCAGTTCTCTGACATGCGGACGTGTCGCGTTTGCCCATTGAATCAGCTGAAACCAGTAGGTGAACTTGTGCTTAGTTACTGCATGATAAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       170507 296 -    281578 T-GTCGAG-CTCGCTGTTTG----------------------------------------GTCTGCACTAGGCCCAGTTAGAGGACTACTTCCCCGACTCCGAGAACCCTGAAGTGGGGGGCCTCATGGCGGTCCTGGCTGTGATTGGAGGCATCGATGGTCGCCTGCGCCTGGGCGGTCAAGTTGTGCACGATGAGTTTGGAGAAGGCACCGTGACTCGCATCACCCCGAAGGGCAAAATCACCGTGCAGTTCTCTGACATGCGGACGTGTCGCGTTTGCCCATTGAATCAGCTGAAACCAGTAGGTGAACTTGTGCTTAGTTACTGCATGATAAGG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164339887 297 - 169600520 TGGTCGAG-CTCGCTGTTTG----------------------------------------GTCTGCACTAGGCCCAGCTAGAGGACTACTTCCCCGACTCCGAGAACCCTGAAGTGGGGGGCCTCATGGCGGTCCTGGCTGTGATTGGAGGCATCGATGGTCGCCTGCGCCTGGGCGGCCAAGTTGTGCACGATGAGTTTGGAGAAGGCACCGTGACTCGCATCACCCCGAAGGGCAGAATCACCGTGCAGTTCTCCGACATGCGGACGTGTCGCGTGTGCCCACTGAGTCAGCTGAAACCAGTAGGTGAACTTGTGCTCGGTTACTGTACGATAAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165660850 297 - 171882078 TGGTCGAG-CTCGCTGTTTG----------------------------------------GTCTGCACTAGGCCCAGCTAGAGGACTACTTCCCCGACTCCGAGAACCCTGAAGTGGGGGGCCTCATGGCGGTCCTGGCTGTGATTGGAGGCATCGATGGTCGCCTGCGCCTGGGCGGCCAAGTTGTGCACGATGAGTTTGGAGAAGGCACCGTGACTCGCATCACCCCGAAGGGCAGAATCACCGTGCAGTTCTCCGACATGCGGACGTGTCGCGTGTGCCCACTGAGTCAGCTGAAACCAGTAGGTGAACTTGTGCTCGGTTACTGTACGATAAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       515656 297 +   2379783 TGGTCGAG-CTCGCTGTTTG----------------------------------------GTCTGCACTAGGCCCAGCTAGAGGACTACTTCCCCGACTCCGAGAACCCTGAAGTGGGGGGCCTCATGGCGGTCCTGGCTGTGATTGGAGGCATCGATGGTCGCCTGCGCCTGGGCGGCCAAGTTGTGCACGATGAGTTTGGAGAAGGCACCGTGACTCGCATCACCCCGAAGGGCAGAATCACCGTGCAGTTCTCCGACATGCGGACGTGTCGCGTGTGCCCACTGAGTCAGCTGAAACCAGTAGGTGAACTTGTGCTCGGTTACTGTACGATAAGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       472417 297 +   4116138 TGGTCGAG-CTCGCTGTTTG----------------------------------------GTCTGCACTAGGCCCAGCTAGAGGACTACTTCCCCGACTCCGAGAACCCTGAAGTGGGGGGCCTCATGGCGGTCCTGGCTGTGATTGGAGGCATCGATGGTCGCCTGCGCCTGGGCGGCCAAGTTGTGCACGATGAGTTTGGAGAAGGCACCGTGACTCGCATCACCCCGAAGGGCAGAATCACCGTGCAGTTCTCCGACATGCGGACGTGTCGCGTGTGCCCACTGAGTCAGCTGAAACCAGTAGGTGAACTTGTGCTCGGTTACTGTACGATGAGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53904700 297 +  58131712 TGGTCCAG-CTCGCTGTTTG----------------------------------------GTCTGCACCAGGCCCAGCTAGAGGACTACTTCCCCGACTGCGAGAACCCTGAAGTGGGGGGCCTCATGGCGGTCCTGGCTGTGATTGGAGGCATCGATGGTCGCCTGCGCCTGGGCGGCCAAGTTGTGCACGATGAGTTTGGAGAAGGCACCGTGACTCGCATCACCCCGAAGGGCAGAATCACCGTGCAGTTCTCCGACATGCGGACGTGTCGCGTGTGCCCACTGAGTCAGCTGAAACCAGTAGGTGAACTTGTGCTCGGTTACTGTACGATAAGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       525146 297 -   3636681 TGGTCGAG-CTCGCTGTTTG----------------------------------------GTCTGCACTAGGCCCAGCTAGAGGACTACTTCCCCGACTCCGAGAACCCTGAAGTGGGGGGCCTCATGGCGGTCCTGGCTGTGATTGGAGGCATCGATGGTCGCCTGCGCCTGGGCGGCCAAGTTGTGCACGATGAGTTTGGAGAAGGCACCGTGACTCGCATCACCCCGAAGGGCAGAATCACCGTGCAGTTCTCCGACATGCGGACGTGTCGCGTGTGCCCACTGAGTCAGCTGAAACCAGTAGGTGAACTTGTGCTCGGTTACTGTACGATGAGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       504740 297 -   4457520 TGGTCGAG-CTCGCTGTTTG----------------------------------------GTCTGCACTAGGCCCAGCTAGAGGACTACTTCCCCGACTCCGAGAACCCTGAAGTGGGGGGCCTCATGGCGGTCCTGGCTGTGATTGGAGGCATCGATGGTCGCCTGCGCCTGGGCGGCCAAGTTGTGCACGATGAGTTTGGAGAAGGCACCGTGACTCGCATCACCCCGAAGGGCAGAATCACCGTGCAGTTCTCCGACATGCGGACGTGTCGCGTGTGCCCACTGAGTCAGCTGAAACCAGTAGGTGAACTTGTGCTCGGTGACTGTACGATAAGG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154535370 297 - 158406734 TGGTTGAG-CTTGCTGTTTG--------------------------------------CCATCTGCGCTAGGCCCAGTTAGAGGACTACTTCCCTGACTCCGAGAACCCTGAAGTGGGGGGCCTCATGGCGGTCCTGGCTGTGATCGGGGGCATCGATGGTCGCCTGCGCCTGGGTGGCCAAGTCATGCACGATGAGTTTGGAGAGGGCACCGTGACTCGTATCACCCCGAAGGGCAGAATCACCGTGCAGTTCTCTGACATGCGGATGTGCCGCGTTTGCCCGTTGAATCAGCTGAAACCGGTGGGTGAACTTGTACTCAGTTACTGCATGA--AAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             367845 285 -   2682657 -------------CTGTTTG--------------------------------------CCGTCTGCACTAGGCCCAGTTAGAGGACTACTTCCCCGACGCCGAGAACCCTGAGGTGGGAGGCCTCATGGCGGTCCTGGCTGTGATCGGGGGCATCGATGGTCGCCTGCGCCTGGGCGGCCAAGTTCTGCACGATGAGTTTGGAGAGGGCACCGTGACTCGCATCACCCCGAAGGGCAGAATCACCGTGCAGTTCTCCGACATGCGGACGCGCCGCGTTTGCCCGTTGAACCAGCTGAAACCGGTAGCGGAACTTGGGCTCAGTTACTGTGTGA--AAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       394050 297 -   2086007 TGGTCGAG-CTGGCTGTTTG--------------------------------------CCGTCTGCACTAGGCCCAGTTAGAGGACTACTTCCCCGACACCGAGAACCCTGAAGTGGGGGGCCTCATGGCGGTCCTGGCTGTGATCGGGGGCATCGATGGTCGCCTGCGCCTGGGCGGCCAAGTCCTGCACGATGAGTTTGGAGAGGGCACCGTGACTCGCATCACCCCGAAGGGCAGAATCACCGTGCAGTTCTCCGAAATGCGGACGTGCCGCGTTTGCCCACTGAATCAGCTGAAACCGGTAGGGGACCTTGGACTCAGTTACTGTGTGA--AAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       454922 297 +   3831555 TGGTCGAG-CTCACTGTTTG--------------------------------------CCGTCTGCACTAGGCCCAGTTAGAGGACTACTTCCCCAACTCCGAGAACCCTGAAGTGGGGGGCCTCATGGCGGTCCTGGCTGTGATCGGGGGCATCGATGGTCGCCTGCGCCTGGGCGGCCAAGTCATGCACGATGAGTTTGGAGAGGGCACCGTGACTCGCATCACCCCGAAGGGCAGAATCACCGTGCAGTTCTCCGACATGCGGATGTGCCGCGTTTGCCCGTTGAATCAGCTGAAACCGGTGGGTGAACTTGTACTTAGTTACTGTGTGA--AAG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13527093 299 +  16154928 TAGCCAAT-CTTGCTGTCTG--------------------------------------CCGTCTACACTAGGCCCTGCTAGAGGACTACTTCCCCGACTCTGAGAACCCAGAAGTAGGAGGCCTTATGGCCGTCCTGGCTGTGATCGGAGGGATTGACAGTCGCCTGCGCCTGGGGGGCCAAGTCATGCATGATGAATTTGGAGAAGGCACCGTGACTCGCATCACCCCAAAAGGCAAAATCACTGTGCAGTTCTCTGACATGCGGACATGTCGTGTTTGCCCGTTGAATCAGCTGAAACCAGTAGGTGCACTTGTGCTCAGTTACTGTATGATAAGG
i proCoq1.NW_012148396v1    C 0 I 128
s otoGar3.GL873689             475681 296 +   3845361 CATCCAG--CTTGCCATCTG--------------------------------------CTGTCTGCCCTAGGTTCTGCTGGAGGACTACTTCCCTGACTCGGAGAACCCGGAGGTGGGGGGCCTCATGGCGGTCCTGGCTGTGATTGGGGGGATTGACGGACGCCTGCGCCTTGGGGGCCAAGTTACGCACGATGAATTTGGAGAAGGCACCGTGACCCGTATCACTCCAAAAGGCAGAATCACGGTGCAGTTCTCAGACATGCGGACGCGCCGCGTGTGCCCATTGAATCAGCTGAAACCAGTAGGTGAACTTGTGCT-AGTT-CTGCATAACAAGG
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56153706 327 + 145441459 AGGCCAGG-CAGGCAGTTTGGAGGCCTGTGCGCCTCGTCCTTACTTGCTCTTTCCTTCCCTCCTGCACTAGGCCCAGCTAGAAGATTACTTCCCAGACTCTGAGAACCTTGAAGTGGGAGGCCTCATGGCAGTCCTCGCTGTCATTGGAGGGATTGATGGCCGTCTGCGCCTGGGAGGCCAGGTCATGCATGATGAGTTTGGAGAGGGCACAGTGACTCGCATCACTCCGAAGGGCAGAATCACCGTGCAGTTCTGTGACATGCGGATGTGCCGAGTTTGCCCACTGAATCAGCTCAAACCGGTATAT-AGCTTGTGCATAGT---------ATTAGG
i mm10.chr7                 I 226 I 3
s canFam3.chr3               60054496 296 -  91889043 TCTTCAAC-CCAGCTGTCTG-----------------------------------------TCTGCATTAGGCCCTGTTAGAGGACTACTTACCTGACTCTGAAAACCCTGAGGTTGGGGGCCTCATGGCAGTCCTGGCTGTGATTGGAGGCATCGATGGTCGCCTACGGCTGGGGGGACAAGTCATGCATGATGAGTTTGGAGAAGGCACAGTAACTCGCATAACTCCGAAGGGCAGAATCACTGTACAATTCTCAGACATGCGGATGTGTCGTGTTTGCCCGTTGAATCAGCTGAAACCAGTAAGTGAACTTGTGTTCAGTTACTTGATAATAAGG
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             438808 299 +    563711 TGCTTGAGACTTGTTGTCTG--------------------------------------CTGTGTGCATTAGGCCCAGCTGGAGGACTATTTCCCTGACTCGGAGAACCCAGAAGTGGGGGGCCTCATGGCAGTCCTGGCTGTGATTGGTGGGATTGACAGCCGCCTGCGACTGGGAGGTCAAGTCACACATGAGGAGTTTGGAGAAGGCACCGTGACTCGCATCACCCCGAAGGGCAGGATCACTGTGCAGTTTTCTGACATGCGGGTGTGTCGTGTGTGTCCTTTGAACCAGCTGAAGCCGGTATGTATATGTGTGTTAAGTCACTGTGT-ACAAGG
i dasNov3.JH562051          C 0 C 0
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=2744.000000
s hg38.chr15_KI270851v1_alt    206041 4 +    263054 -GAAA
s panTro5.chr15               9593133 4 +  83230942 -GAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74126978 4 -  99763055 -GAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       170803 4 -    281578 -GAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164340184 4 - 169600520 -GGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661147 4 - 171882078 -GGAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       515953 4 +   2379783 -GGAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       472714 4 +   4116138 -GGAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53904997 4 +  58131712 -GGAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       525443 4 -   3636681 -GGAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505037 4 -   4457520 -GGAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154535667 4 - 158406734 -GGAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368130 4 -   2682657 -GGAC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       394347 4 -   2086007 -GGAT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       455219 4 +   3831555 -GGAT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             475977 2 +   3845361 ---AA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56154036 4 + 145441459 -GAAA
i mm10.chr7                 I 3 C 0
s canFam3.chr3               60054793 3 -  91889043 -AGA-
i canFam3.chr3              I 1 I 107
s dasNov3.JH562051             439107 4 +    563711 CTCA-
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13527392 128 +  16154928 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=642335.000000
s hg38.chr15_KI270851v1_alt    206045  92 +    263054 TTGAC----------------------------------------------------------------------------------------TTTACACTAGAACCGAGCACCAACATCAGCACTTGAAAGAACTTGATTCTGGTACTTGAAGTTTGCCTTCCAGGAAGCTGTG------------------------------------------CGAGC
s panTro5.chr15               9593137  92 +  83230942 TTGAC----------------------------------------------------------------------------------------TTTACACTAGAACCGAGCACCAACATCATCACTTGGAAGAACTTGATTCTGGTACTTGAAGTTTGCCTTCCAGGAAGCTGTG------------------------------------------TGAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74126982  92 -  99763055 TTGAC----------------------------------------------------------------------------------------TTTACCCTAGAACCGAGCACCAACATCATCACTTGGAAGAACTTGATTCTGGTACTTGAAGTTTGCCTTCCAGGAAGCTGTG------------------------------------------TGAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       170807  92 -    281578 TTCAC----------------------------------------------------------------------------------------TTTACACTAGAACCGAGCACCAACATCAGCACTTGAAAGAACTTGATTCTGGTACTTCAAGTTTGCCGTCCAGGAAGCTGTG------------------------------------------TGAGC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164340188  92 - 169600520 TCAGC----------------------------------------------------------------------------------------TTTATGCTAGAACCGGGCACCACCACTAGCATTTGAAAGAACTTGATTCTGGTACTTCAAGTTTGCCTTCCAGGAAGCTATG------------------------------------------TGAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661151  92 - 171882078 TCAGC----------------------------------------------------------------------------------------TTTACGCTAGAACCGGGCACCACCACTAGCATTTGAAAGAACTTGATTCTGGTACTTCAAGTTTGCCTTCCAGGAAGCTATG------------------------------------------TGAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       515957  92 +   2379783 TCAGC----------------------------------------------------------------------------------------TTTACGCTAGAACCGGGCACCACCACTAGCATTTGAAAGAACTTGATTCTGGTCCTTCAAGTTTGCCTTCCAGGACGCTATG------------------------------------------TGAGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       472718  92 +   4116138 TCAGC----------------------------------------------------------------------------------------TTTACGCTGGAACCGGGCACCACCACTAGCATTTGAAAGAACTTGCTTCTGGTACTTCAAGTTTGCCTTCCAGGAAGCTATG------------------------------------------TGAGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53905001  92 +  58131712 TCAGC----------------------------------------------------------------------------------------TTTATGCTAGAACCGGGCACCACCACTAGCATTTGAAAGAACTTGATTCTGGTACTTCAGGTTTGCCTTCCAGGAAGCTATG------------------------------------------TGAGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       525447  92 -   3636681 TCAGC----------------------------------------------------------------------------------------TTTACGCTAGAACCGGGCACCAGCACTAGCATTTGAAAGAACTTGATTCTGGTACTTCAAGTTTGCCTTCCAGGAAGCTATG------------------------------------------TGAGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505041  92 -   4457520 TCAGC----------------------------------------------------------------------------------------TTTACACTAGAACCGGGCACCACCATTAGCACTTGAAAGAACTTGATTCTGGTACCTCAAGTTTGCCTTCCAGGAAGCTATG------------------------------------------TGAGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154535671 128 - 158406734 TTGGC----------------------------------------------------------------------------------------TTTACCCTAGAACCCAGCTCCAACATTAGCACTTGAAAGGACTTGATTCTGGTACTTGAGGTTTGCCTTCCAGGAAGCTACCTGACCCAGGA-----AGGAAAACCACCTCTCTTCCCTCCCC-TGAGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368134 100 -   2682657 TTGGC----------------------------------------------------------------------------------------TTTAGCCCAGAACCCAGCTCCAACGTGAGCGCTGGGAAGAACTTGATTGTGGTACTT----------------------------CCCAGGA-----AGGGGAACCACGTCTCTTCCCCGCCC-TGAGC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       394351 128 -   2086007 TTGGC----------------------------------------------------------------------------------------TTTACCCTAGAACCCAGCTCCAACATTAGCACTGGAAAGAACTTGATTCTGGTACTTCAGGTTTGCCTTCCAGGAGGCTGCCTGACCCAGGA-----AGGAGAACCACCTCTCTTCCCTCCCC-TGAGC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       455223 126 +   3831555 TCGGC----------------------------------------------------------------------------------------TTTACCCTAGAAGCCAGCTTCAACATTAGCACTTGAAAGAACTTGATTCTGGTACTTGAGGTCTGCCTTCCAGGAAGCTACCTGACCCTGGA-----AGGAAAATCAC--CTCTTCCCTCCCC-TGAGC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             475979 123 +   3845361 GTAGG----------------------------------------------------------------------------------------TTTGGATCAGAACCGGGTTCTGAAATTAAAACTTGG-AGCCCTTGGTTCTCAAACTCGGTGTCTGCCCTCTAGGAAACTGTG---------A-CTTCAGGGAAACCACTTCCATTTTGTCTATGTTAGT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56154040  90 + 145441459 CTGGC----------------------------------------------------------------------------------------TTG-----------------TGACATTAGAACTTGGAAGAACCT-------CTACTTTATGTC-GCCTTCTTGGAAGCTATG---------AGAATCAGGAGAGTTACCTCTTTCCTTC----------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60054903 180 -  91889043 ttggcacttgatcctgggactccagggccatgcccctggccaaaggcaggtgctaaaccactgagccacccaggaatcccGAGGCAGAGGAGTTTTATACTAGATCTGGGTTCTAACATCAGTGCTGGAATGAACTTGATTTTCATAGTTCATGtctaccatctaggaggctatg------------------------------------------caacc
i canFam3.chr3              I 107 I 33
s dasNov3.JH562051             439111 118 +    563711 TTGGT----------------------------------------------------------------------------------------TTTCTACTAGAACTGGATTCTAATGTCAGACCTTGAGAAAACTTGAATCTTGCATTTCTTGTTTCTTTTCTAAGAAGCTTTC---------TGACTTAGGAAAACCATTTACCTTTC-------TTAAC
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13527392 128 +  16154928 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=404671.000000
s hg38.chr15_KI270851v1_alt    206137 36 +    263054 TTGTG-CTTCTGTGG-----TAAGCAGGGCCTGTCTCACAGG
s panTro5.chr15               9593229 36 +  83230942 TTGTG-CTTCTGTGG-----TAAGCAGGGCCTGTCTCACAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74127074 36 -  99763055 TTGTG-CTTCTGTGG-----TAAGCAGGGCCTGTCTCACAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       170899 36 -    281578 TTGCA-CTTCTGTGG-----TAAGCAGGGCCTGTCTCACAGG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164340280 36 - 169600520 TTGTG-CTTCTGTGG-----TAAGCAGAGCCTGTCTCACAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661243 36 - 171882078 TTGTG-CTTCTGTGG-----TAAGCAGAGCCTGTCTCACAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       516049 36 +   2379783 TTGTG-CTTCTGTGG-----TAAGCAGAGCCTGTCTCACAGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       472810 36 +   4116138 TTGCG-CTTCTGTGG-----TAAGCAGGGCCTGTCTCACAGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53905093 36 +  58131712 TTGCG-CTTCTGTGG-----TAAGCAGGGCCTGTCTCACAGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       525539 36 -   3636681 TTGCG-CTTCTGTGG-----TAAGCAGGGCCTGTCTCACAGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505133 36 -   4457520 TTGTG-CTTCTGTGG-----TAAGCAGGGCCTGTCTCACAGG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154535799 36 - 158406734 GTGGG-CTTCTCGGG-----TAAGCAGGGCCTCGCTCACAGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368234 35 -   2682657 TTGGG-CTTCTGTGG-----TAGGCAGGGCCTCGCTCACAG-
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       394479 36 -   2086007 TTGGG-CTTCTGTGG-----TAAGCAGGGCCTCGCTCACAGG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       455349 35 +   3831555 TTGGG-CTTCTGTGG-----TAAGCAGGGCCTTGCTCACGG-
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13527520 36 +  16154928 TTGTG-CTCCTGTGA-----TAAGCAGGGCCTGTCTCATAGG
i proCoq1.NW_012148396v1    I 128 I 53
s otoGar3.GL873689             476102 36 +   3845361 TTGCA-CCTCTGTGA-----TAAGCAGAGCCTGCCTCACAGG
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56154130 41 + 145441459 TTGTG-CTAGTTTATACACCCAAGAAAGGCCTGACTCATGGG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60055116 36 -  91889043 ttgtg-ccatggtga-----taaatagggcctgtctcatggt
i canFam3.chr3              I 33 I 1
s dasNov3.JH562051             439229 25 +    563711 TTGTTCCTTTTGTGG-----T--------CATGTGTAA----
i dasNov3.JH562051          C 0 C 0
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=119596.000000
s hg38.chr15_KI270851v1_alt    206173 15 +    263054 GCACTTAAAGCAGTG
s panTro5.chr15               9593265 15 +  83230942 GCACCTAAAGCAGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74127110 15 -  99763055 GCACTTAAAGCAGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       170935 15 -    281578 GCACTTAAAGCAGTG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164340316 15 - 169600520 GCACCTAAAGCAGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661279 15 - 171882078 GCACCTAAAGCAGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       516085 15 +   2379783 GCACCTAAAGCAGTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       472846 15 +   4116138 GCACCTAAAGCAGTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53905129 15 +  58131712 GCACCTAAAGCAGTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       525575 15 -   3636681 GCACCTAAAGCAGTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505169 15 -   4457520 GCACCTAAAGCAGTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154535835 15 - 158406734 GCATCAAAAGCAGTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368269 15 -   2682657 GCAGCGAAAGCAGTG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       394515 15 -   2086007 GCATCGAAAGCAGTG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       455384  1 +   3831555 --------------G
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             476138 15 +   3845361 GCCCAAGGAGCAGTG
i otoGar3.GL873689          C 0 I 129
s mm10.chr7                  56154171 14 + 145441459 -GGCATACAGCCAGG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60055153 15 -  91889043 ttacatggattaGTA
i canFam3.chr3              I 1 C 0
s dasNov3.JH562051             439254  9 +    563711 ------AAAGTAGTA
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13527556 53 +  16154928 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=125091.000000
s hg38.chr15_KI270851v1_alt    206188 13 +    263054 GTTCGTGTGTATT
s panTro5.chr15               9593280 13 +  83230942 GTTTGTGTGTATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74127125 13 -  99763055 GTTCGTGTGTATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       170950 13 -    281578 GTTCGTGTGTATT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164340331 13 - 169600520 GTTCGTGTGTGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661294 13 - 171882078 GTTCGTGTGTGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       516100 13 +   2379783 GTTCGTGTGTGTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       472861 13 +   4116138 GTTCGCGTGTGTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53905144 13 +  58131712 GTTCGTGTGTGTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       525590 13 -   3636681 GTTCGCGTGTGTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505184 13 -   4457520 GTTCGTGTGTGTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154535850 13 - 158406734 GTTCGTGTGTCTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368284 13 -   2682657 GTTCGTGTGTCTT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       394530 13 -   2086007 GTTCGTGTGTCTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       455385 13 +   3831555 GTTCGTGTGTCTT
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56154185  5 + 145441459 --------GAACT
i mm10.chr7                 C 0 I 1
s canFam3.chr3               60055168 13 -  91889043 GTTCATGTCTTAT
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             439263 13 +    563711 GTTTATATGTATT
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13527556 53 +  16154928 I
e otoGar3.GL873689             476153 129 +   3845361 I
e nomLeu3.chr6               71027480 6354 + 121039945 M

a score=533072.000000
s hg38.chr15_KI270851v1_alt    206201 51 +    263054 TCAGCCTCAGAGACACGAAGAGGGCTTTAGCAACCTAGAAGGTACCGTGCA
s panTro5.chr15               9593293 51 +  83230942 TCAGCCTCAGAGACACGAAGAGGGCTTTAGCAACCTAGAAGTTACCGTGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74127138 51 -  99763055 TCAGCCTCAGAGACACGAAGAGGGCTTTAGCAACCTAGAAGTTACCGTGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       170963 51 -    281578 TCAGCCTCAGAGACACGAAGAGGGCTTTAGCAACCTAGAAGGTACCGTGCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71033834 51 + 121039945 TCAGCCTCAGAGACACGAAGAGGGCTTTAGCAACCTAGAAGGTACTGTGCA
i nomLeu3.chr6              M 6354 C 0
s rheMac8.chr7              164340344 48 - 169600520 TCAGCCTCAGAGACAC---GAGGGCTTTAGCAACCTAGAAGGTACCGTGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661307 48 - 171882078 TCAGCCTCAGAGACAC---GAGGGCTTTAGCAACCTAGAAGGTACCGTGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       516113 37 +   2379783 TCAGCCTCAGAGACAC---GAGGGCTTTAGCA-----------ACCGTGCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       472874 48 +   4116138 TCAGCCTCAGAGACAC---GAGGGCTTTAGCAACCTAGAAGGTACCGTGCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53905157 48 +  58131712 TCAGCCTCAGAGACAC---GAGGGCTTTAGCAACCTAGAAGGTACCGTGCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       525603 48 -   3636681 TCAGCCTCAGAGACAC---AAGGGCTTTAGCAACCTAGAAGGTACCGTGCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505197 48 -   4457520 TCAGCCTCAGAGACAC---GGGGGCTTTAGCAACCTAGAAGGTACCGTGCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154535863 51 - 158406734 TTAGCCTCAGAGCCATGAAGAGGGCTTTAGCAGCCTAGAAGGTACTGTGCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368297 51 -   2682657 TTAGCCTCAGAGCCAGGAAGAGGGCTTTAGCAGCCTAGAAGGTACTGTGCA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       394543 51 -   2086007 TTAGCCTCAGAGCCGTGAAGAGGGCTTTAGCCCCCTAGAAGGTAGTGTGCA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       455398 51 +   3831555 TTAGTCTCAGAGCCATGAAGAGGGCTTTAGCAGCCTAGAAGGTACTGTGCA
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56154191 50 + 145441459 TCAACGTCCTAGACATAAAAAGGGA-TTAACAATCTATAAGGTAATTtgta
i mm10.chr7                 I 1 I 425
s canFam3.chr3               60055182 50 -  91889043 TTAGCCCCAAAGACAT-AAAAGGGCATTAGCAACATAGAAGGTACTTCTAA
i canFam3.chr3              I 1 I 6
s dasNov3.JH562051             439276 50 +    563711 TTACCCTCAAAGACATGA-ATGGGCATTAGCAATGTAAGAGGTGCTATATA
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13527556 53 +  16154928 I
e otoGar3.GL873689             476153 129 +   3845361 I

a score=453126.000000
s hg38.chr15_KI270851v1_alt    206252 39 +    263054 TCTATGAGGTAGTTCTAATTATTTTAAAATGTGAATTTA
s panTro5.chr15               9593344 39 +  83230942 TCTATGAGGTAGTTCTAATTATTTTAAAATGTGAATTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74127189 39 -  99763055 TCTATGAGGTAGTTCTAATTATTTTAAAATGTGAATTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       171014 39 -    281578 TCTATGAGGTAGTTCTAATTATTTTAAAATGTGAATCTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71033885 39 + 121039945 TCTATGAGGTAGTTCTAATTATTTTAAAATGTGAATTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164340392 39 - 169600520 TCTATGAGGTAGTTCTAATTATTTTAAAATGTGAATTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661355 39 - 171882078 TCTATGAGGTAGTTCTAATTATTTTAAAATGTGAATTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       516150 39 +   2379783 TCTATGAGGTAGTTCTAATTATTTTAAAATGTGAATTTA
i macNem1.NW_012011934v1    C 0 I 308
s cerAty1.NW_012001462v1       472922 39 +   4116138 TCTATGAGGTAGTTCTAATTATTTTAAAATGTGAATTTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53905205 39 +  58131712 TCTATGAGGTAGTTCTAATTATTTTAAAATGTGAATTTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       525651 39 -   3636681 TCTATGAGGTAGTTCTAATTATTTTAAAATGTGAATTTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505245 39 -   4457520 TCTATGAGGTAGTTCTAACTGTTTTAAAATGTGAATTTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154535914 39 - 158406734 TCTATGAGGTGGTTCTAATTATTTTAAAATGTGAATTTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368348 37 -   2682657 --AGTGAGGTGGTTCTAATTATTTTAAAATGTGAATTCA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       394594 39 -   2086007 TCTATGAGGTGGTTCTAATTATTTTAAAATGTGAATTTA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       455449 39 +   3831555 TCTATGAGGTGGTTCTAATTATTTTAAAATGTAAATTTA
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60055238 26 -  91889043 TTT------TAGttttaattattttaaaattt-------
i canFam3.chr3              I 6 C 0
s dasNov3.JH562051             439326 35 +    563711 --ACTGAG--AGttttaattattttaaaatatgaattta
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56154241 425 + 145441459 I
e proCoq1.NW_012148396v1     13527556 53 +  16154928 I
e otoGar3.GL873689             476153 129 +   3845361 I

a score=13923.000000
s hg38.chr15_KI270851v1_alt    206291 1 +    263054 T
s panTro5.chr15               9593383 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74127228 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       171053 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71033924 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164340431 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661394 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       516497 1 +   2379783 T
i macNem1.NW_012011934v1    I 308 C 0
s cerAty1.NW_012001462v1       472961 1 +   4116138 T
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53905244 1 +  58131712 T
i chlSab2.chr26             C 0 I 308
s manLeu1.NW_012102332v1       525690 1 -   3636681 T
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505284 1 -   4457520 T
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154535953 1 - 158406734 T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368385 1 -   2682657 T
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       394633 1 -   2086007 T
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       455488 1 +   3831555 T
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60055264 1 -  91889043 t
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             439361 1 +    563711 t
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56154241 425 + 145441459 I
e proCoq1.NW_012148396v1     13527556 53 +  16154928 I
e otoGar3.GL873689             476153 129 +   3845361 I

a score=988304.000000
s hg38.chr15_KI270851v1_alt    206292 102 +    263054 GAAGTTTACTTTTTATTCAACAACTCAAG-TTTTAAAAA--AAC--AAACATGTTTAAACACC--TTTAAAAAAACAGCCTTTCTTCATGTAGAAAATGCTTAGTAGTT---
s panTro5.chr15               9593384 104 +  83230942 GAAGTTTACTTTTTATTGAACAACTCAAG-TTTTAAAAA--AACTTAAACATGTTTAAACACC--TTTAAAAAAACAGCCTTTCTTCATGTAGAAAATGCTTAGTAGTT---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74127229 102 -  99763055 GAAGTTTACTTTTTATTGAACAACTCAAG-TTTTAAAAA--AAC--AAACATGTTTAAACACC--TTTAAAAAAACAGCCTTTCTTCATGTGGAAAATGCTTAGTAGTT---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       171054 102 -    281578 GAAGTTTACTTTTTATTGAACAACTCAAG-TTTTAGAAA--AAC--AAACATGTTTAAACACC--TTTAAAAAAACAGCCTTTCTTCATGTAGAAAATGCTTAGTAGTT---
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71033925 104 + 121039945 GAAGTTTACTTTTTATTGAACAACTCAAG-TTTTAAAAA--AACTTAAACATGTTTAAACACC--TTTAAAAAAACAGCCTTTCTTCATGTAGAAAATGCTTAGTTGTC---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164340432  99 - 169600520 GAAGTTCACTTTTTATTGAACAACTC--G-TTTTAAAAA--AACTTAAACATGTTT---CCTT--TTTAAAAAAACAACCTTTCTTCATGTAGAAAATGCATAGTTGTT---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661395  99 - 171882078 GAAGTTCACTTTTTATTGAACAACTC--G-TTTTAAAAA--AACTTAAACATGTTT---CCTT--TTAAAAAAAACAACCTTTCTTCATGTAGAAAATGCATAGTTGTT---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       516498  99 +   2379783 GAAGTTCACTTTTTATTGAACAACTC--G-TTTTAAAAA--AACTTAAACATGTTT---CCTT--TTAAAAAAAACAACCTTTCTTCATGTAGAAAATGCATAGTTGTT---
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       472962 101 +   4116138 GAAGTTCACTTTTTATTGAACAACTCAAG-TTTAAAAAA--AACTTAAACATGTTT---CCTT--TTTAAAAAAACAACCTTTCTTCATGTAGAAAATGCATAGTTGTT---
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53905553 101 +  58131712 GAAGTTCACTTTTTATTGAACAACTCAAG-TTTTAAAAA--AACTTAAACATGTTT---CCTT--TTTTAAAAAACAACCTTTCTTCATGTAGAAAATGCATAGTTGTT---
i chlSab2.chr26             I 308 C 0
s manLeu1.NW_012102332v1       525691 101 -   3636681 GAAGTTCACTTTTTATTGAACAACTCAAG-TTTTAAAAA--AACTTAAACATGTTT---CCTT--AAAAAAAAAAAAACCTTTCTTCATGTAGAAAATGCATAGTTGTT---
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505285 101 -   4457520 GAAGTTCACTTTTTATTGAACAACTCAAG-TTTTAAAAA--AACTTAAACATGTTT---CCTT--TTAAAAAAAAAAACCTTTCTTCATGTAGAAAATGCATAGTTGTT---
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154535954 101 - 158406734 GAAGTTTACTTTTTATTGAACAACTCAGG-TTTTTAAAA--AACTTAAACATGATT---CCTT--TAAAAAAAAAAAACCTTCCTTCATGTAGAAAATGCTTAGCTGTT---
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368386 103 -   2682657 GAAGTTTACTTTTTATTGAACAACTCAGG-TTTTAAAAA--AACTTAAACATGATT---CCTTAAAAAAAAAAAAAAACCTTTCTTCATGTAGAAAATGCTTAGTTGTT---
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       394634 102 -   2086007 GAAGTTTACTTGTTATTGAACAACTCAGGTTTTTAAAAA--AACTTAAACATGATT---CCTT--TTAAAAAAAAAAACCTTTCTTCATGTAGAAAATGCTTAGTTGTT---
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       455489 100 +   3831555 GAAGTTTATTTTTTATTGAACAACTCAGG-TTTTAAAAA--AACTTAAACATGATT---CCTT---AAAAAAAAACCACCTTTCTTCATGTAGAAAATGCTTAGTTGTT---
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60055265  95 -  91889043 gaagttt--tttttattGAAAAACTCAAC-TTTTAAAGA--AATTTAAAAGTAATT---CCTT------AAAAAATGACTTTTCTTCATGTAGAAAATGCTTATTAATT---
i canFam3.chr3              C 0 I 3
s dasNov3.JH562051             439362  98 +    563711 gaagttta-tttttattGAGCAATTCAGa-tttaaaaaatgaaaaaaaaaaagatt------t--tttaaaataataaCCTCT----ATGTGGAAAATAGTTCTCATTTTTG
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56154241 425 + 145441459 I
e proCoq1.NW_012148396v1     13527556  53 +  16154928 I
e otoGar3.GL873689             476153 129 +   3845361 I

a score=714757.000000
s hg38.chr15_KI270851v1_alt    206394 68 +    263054 TTGAGTGACGTGACTTA-ATGTAGCAGCTACTGTCATC--------TTAATCTGTGAATCAAGGATGCACAGGGAGA
s panTro5.chr15               9593488 68 +  83230942 TTGAGTGACGTGACTTA-ATGTAGCAGCTGCTGTCATC--------TTAATCTATGAATCAAGGATGCACAGGGAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74127331 68 -  99763055 TTGAGTGACGTGACTTA-ATGTAGCAGCTACTGTCATC--------TTAATCTGTGAATCAAGGATGCACAGGGAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       171156 68 -    281578 TTGAGTGACGTGACTTA-ATGTAGCAGCTACTGTCATC--------TTAATCTGTGAATCAAGGATGCACAGGGAGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71034029 68 + 121039945 TTGAGTGACATGACTTA-ATGTCGCAACTACTGTCATC--------TTAACCTATGAATCAAGGATGCACAGGGAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164340531 68 - 169600520 TTGAGTGACATGACTCA-ATGTAGCAGCTACTGTCAAC--------TTAACCTGTGAATCAGGGATACACAGAGAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661494 68 - 171882078 TTGAGTGACATGACTTA-ATGTAGCAGCTACTGTCAAC--------TTAACCTGTGAATCAGGGATGCACAGAGAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       516597 68 +   2379783 TTGAGTGACATGACTTA-ATGTAGCAGCTACTGTCAAC--------TTAACCTGTGAATCAGGGATGCACAGAGAGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       473063 63 +   4116138 CTGAGTGACATGACTTA-ATGTAGCAGCTACTGTC-------------AACCTGTGAATCAGGGATGCACAGAGAGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53905654 68 +  58131712 TTGAGTGACATGACTTA-ATGTAGCAGCTACTGTCAAC--------TTAACCTGTGAATCAGGGATGCACAGAGAGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       525792 61 -   3636681 TTGAGTGACATGAC--A-ATGTAGCAGCTACTGTC-------------AACCTGTGAATCAGGGATGCACAGAGAGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505386 68 -   4457520 TTGAGTGACATGACTTA-ATATAGCAGCTACTGTCAAC--------TTAACCTGTGAATCAGGGATGCACAGGGAGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154536055 74 - 158406734 TTCAGTGAC--GACTTA-ATGTGGCAGCTACTGTCATTCATTCATGCACACCTATGCATCAGGGATGCACAGGGAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368489 76 -   2682657 TTGAGTGACATGACTTC-ATGTAGCAGCCACTGTCATTCACTCATGCACACCTATGAATCAGGGGTGCACAGGGAAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       394736 76 -   2086007 TTGAGTGGCATGACTGA-ATGTAGCAGCTACTGTCATTCATTCTTGCACACCTATGAATCAGGGATGCACAGGGAAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       455589 76 +   3831555 TTGAGTGACATGACTTA-ATGTAGCAGCTACTGTCATTCATTCATGCACAGCTAAGAATCAGGGATGCACAGGGGAG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13527609 69 +  16154928 TTGAGTGACATGACTTA-ATATAGCAGCTACTGTCATCT-------TAAACCTGTGAGTTAGGGATGCATAAGGAAG
i proCoq1.NW_012148396v1    I 53 C 0
s canFam3.chr3               60055363 64 -  91889043 TTGAGTGACGTGATTT--ATGTAGCAGCTATTGTCATC--------TTAA---ATTTATCAGGGATATATAGGGAAA
i canFam3.chr3              I 3 C 0
s dasNov3.JH562051             439460 62 +    563711 TTGAGTGAGATGACTTACGTAGAGTAGCTTCTGACATT--------T-------TGAACCTACAATGCGTAAGGAAA
i dasNov3.JH562051          C 0 I 306
e mm10.chr7                  56154241 425 + 145441459 I
e otoGar3.GL873689             476153 129 +   3845361 I

a score=310537.000000
s hg38.chr15_KI270851v1_alt    206462 28 +    263054 AGGAGCCATTTACATTATTTTGATGTAG
s panTro5.chr15               9593556 28 +  83230942 AGGAGCCATTTACATTATTTTCATGTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74127399 28 -  99763055 AGGAGCCATTTACATTATTTTCATGTAG
i panPan2.chr15             C 0 M 1060
s gorGor5.CYUI01000141v1       171224 28 -    281578 AGGAGCCATTTACATTATTTTCATGTAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71034097 28 + 121039945 AGGAGCCATTTACATTATTTTCATGTAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164340599 28 - 169600520 AGGAGCCATTTACATTATTTTCATGTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661562 28 - 171882078 AGGAGCCATTTACATTATTTTCATGTAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       516665 28 +   2379783 AGGAGCCATTTACATTATTTTCATGTAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       473126 28 +   4116138 AGGAGCCATTTACATTATTTTCATGTAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53905722 28 +  58131712 AGGAGCCATTTACATTATTTTCATGTAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       525853 28 -   3636681 AGGAGCCATTTACATTATTTTCATGTAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505454 28 -   4457520 AGGAGCCATTTACGTTGTTTTCATGTAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154536129 28 - 158406734 AGGAGTGGTTTCCATTATTTTGATGTAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368565 28 -   2682657 AGGAGTGACTTCCAGTATCTTGATGTAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       394812 28 -   2086007 AGGAGTGACTTGCATTATTTTGATGTAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       455665 28 +   3831555 AGGAGTGATTTCCATTATTTTGATGTAG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13527678 28 +  16154928 GTGAGTGATTTACATTATTTTAATGTAA
i proCoq1.NW_012148396v1    C 0 C 0
s canFam3.chr3               60055427 28 -  91889043 GTGAGTGATTTATATTACTTTGATGTGA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56154241 425 + 145441459 I
e dasNov3.JH562051             439522 306 +    563711 I
e otoGar3.GL873689             476153 129 +   3845361 I

a score=233934.000000
s hg38.chr15_KI270851v1_alt    206490 21 +    263054 CCCAAGTGCAATCTTACTATA
s panTro5.chr15               9593584 21 +  83230942 CCCAAGTGCAATCTTACTATA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       171252 21 -    281578 CCCAAGTGCAATCTTACTATA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71034125 21 + 121039945 CCCAAGTGCAGTCTTACTATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164340627 21 - 169600520 CCCAAGTGCAATCTTACTATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661590 21 - 171882078 CCCAAGTGCAATCTTACTATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       516693 21 +   2379783 CCCAAGTGCAATCTTACTATA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       473154 21 +   4116138 CCCAAGTGCAATCTTACTATA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53905750 21 +  58131712 CCCAAGTGCAATCTTTCTATA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       525881 21 -   3636681 CCCAAGTGCAATCTTACTATA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505482 21 -   4457520 CCCAAGTGCAATCTTACTATA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154536157 21 - 158406734 CCCAAGTGCAGTCTTACTATA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368593 21 -   2682657 CCCAAGTGCAATCCTACTATA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       394840 21 -   2086007 CCCAAGTGCAATCTTACAATA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       455693 21 +   3831555 CCCAAGTGCAGTCTTACTATA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13527706 21 +  16154928 CCCAAGTACAATCTAACTATA
i proCoq1.NW_012148396v1    C 0 I 35
s canFam3.chr3               60055455 21 -  91889043 TCTAAGTGTAATCAGGCTGTA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56154241 425 + 145441459 I
e dasNov3.JH562051             439522 306 +    563711 I
e otoGar3.GL873689             476153 129 +   3845361 I
e panPan2.chr15              74127427 1060 -  99763055 M

a score=14705.000000
s hg38.chr15_KI270851v1_alt    206511  4 +    263054 TA-------tt
s panTro5.chr15               9593605  4 +  83230942 TA-------tt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       171273  4 -    281578 TA-------tt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71034146  4 + 121039945 TA-------tt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164340648  4 - 169600520 TC-------tt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661611  4 - 171882078 TC-------tt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       516714  4 +   2379783 TC-------tt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       473175  4 +   4116138 TC-------tt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53905771  6 +  58131712 TC-----Cttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       525902 11 -   3636681 TCtttttcttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505503  4 -   4457520 TC-------tt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154536178  4 - 158406734 tt-------tt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368614  4 -   2682657 tt-------tt
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       394861  4 -   2086007 tt-------tt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       455714  4 +   3831555 tt-------tt
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60055476  4 -  91889043 TC-------TT
i canFam3.chr3              C 0 I 23
e mm10.chr7                  56154241 425 + 145441459 I
e proCoq1.NW_012148396v1     13527727 35 +  16154928 I
e dasNov3.JH562051             439522 306 +    563711 I
e otoGar3.GL873689             476153 129 +   3845361 I
e panPan2.chr15              74127427 1060 -  99763055 M

a score=2183739.000000
s hg38.chr15_KI270851v1_alt    206515 273 +    263054 ctttttc----t----------tttttattttg-agat-ggagtcttgctcttgtcacccaggctggagtgcaatggcacaatgttgtcggccctctgcaacctttgcctcccgggttcaagcgattctcctgcctcagcctcctgagtgtctgggattacggtgtgtgccaccacgcctggctaattttgtatttttagtagagatggggtttcactatgttggccgggctggtctcaaactcctgacctcaggtgatccgcccgcctcggcctcccaaagtgctggg
s panTro5.chr15               9593609 273 +  83230942 ctttttc----t----------tttttattttg-agat-ggagtcttgctcttgtcacccaggctggagtgcaatgacacggtcttgtcagccatctgcaacctttgcctcccgggttcaagcgattctcctgcctcagcttcctgagtagctgagattatggtgtgtgccaccacgcctggctaattttgtatttttagtagagatggggtttcactatgttggccgggccggtctcaaactcctgacctcaggtgatccgcccgcctcggcctcccaaagtgctggg
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       171277 275 -    281578 ctttttc--ttt----------ttttttttttg-agat-ggagtcttgctcttgtcacccaggctggagtgcaatggcacagtgttgtcggccctctgcaacctttgcctcccgggttcaagcgattctcctgcctcagcctcctgagtggctgggattacggtgtgtgccaccacacctggctaattttgtatttttagtagagatggggtttcactatgttggccgggccggtctcaaactcctgacctcaggtgatccgcccgcctcggcctcccaaagtgctggg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71034150 270 + 121039945 ctttttc----t----------ttt---ttttg-agat-ggaatcttgctcttgtcacccaggctggagtacaatggcacgatcttgttggccctctgcaacctttgcctcccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattacggtgcgtgccaccacacctggctaattttgtatttttagtagagatggggtttcactatgttggccgggctggtctcaaactcctgacctcaggtgatccgcccgcctcagcctcccaaagtgctcgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164340652 276 - 169600520 tttctttttttt----------ttttttttttg-agataagagtcttgctcttgtca--caggctggggtgcaatggcacgatcttgtcggctctctgcaacctttgcctcccaggttcaggcaattctcctgcctcagcctcctgagtagctgggattacggtgtgtgccaccacgcctggctaattttgtatttttagtagagacagggtgtcactatgttggccgggctggtctcaaactcctgacctcaggtgatctgcccgccttgggctcccaaagtgctggg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661615 277 - 171882078 tttctttttctt----------tttttttttttgagataagagtcttgctcttgtca--caggctggggtgcaatggcacgatcttgtcggctctctgcaacctttgcctcccaggttcaggcaattctcctgcctcagcctcctgagtagctgggattacggtgtgtgccaccacgcctggctaattttgtatttttagtagagacagggtgtcactatgttggccgggctggtctcaaactcctgacctcaggtgatctgcccgccttgggctcccaaagtgctggg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       516718 276 +   2379783 tttctttttttt----------ttttttttttt-agataagagtcttgctcttgtca--caggctggggtgcaatggcacgatcttgtcggctctctgcaacctttgcctcccaggttcaggcaattctcctgcctcagcctcctgagtagctgggattacggtgtgtgccaccacgcctggctaattttgtatttttagtagagacagggtgtcactatgttggccgggctggtctcaaactcctgacctcaggtgatctgcccgccttgggctcccaaagtgctggg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       473179 275 +   4116138 tttctttttttt----------ttttttttttg-agat-agagtcttgctcttgtca--caggctggggtgcaatggcacgatcttgtcggctctctgcaacctttgcctcccagtttcaggcaattctcctgcctcagcctcctgagtagctgggattacggtgtgtgccaccacgcctggctaattttgtatttttagtagagacagggtgtcactatgttggccgggctggtctcaaactcctgacctcaggtgatctgcccgccttgggctcccaaagtgctggg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53905777 275 +  58131712 tctttttctttt----------ttttttttttg-agat-agagtcttgctgttgtca--caggctggggtgcaatggcacgatcttgtcggctctctgcaacctttgcctcccaggttcaggcaattctcctgcctcagcctcctgagtagctgggattacggtgtgtgccaccacgcctggctaattttgtatttttagtagagacagggtgtcactatgttggccggtctggtctcaaactcctgacctcaggtgatctgcgcgccttgggctcccaaagtgctggg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       525913 275 -   3636681 tttttttttttt----------ttttttttttg-agat-agagtcttgctcttgtca--caggctggggtgcaatggcacgatcttgtcggctctctgcaacctttgcctcccaggttcaggcaattctcctgcctcagcctcctgagtagctgggattacggtatgtgccaccacgcctggctaattttgtatttttagtagagacagggtgtcactatgttggccgggctggtctcaaactcctgacctcaggtgatctgcccgccttgggctcccaaagtgctggg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505507 267 -   4457520 tttctt--tttt----------ttttttttttg-agat-ggagtc------ttgtct--caggctggagtgcaatggcacgatcttgtcggctctctgcaacctttgcctcccaggttcaagcagttctcctgcctcagcctcctgagtagctgggattatggtgtgtgccaccgcgtctggctaattttgtatttttagtagagacagggtgtcactatgttggccgggctggtctcaaactcctgacctcaggtgatctgcccgccttgggctccgaaagtgctggg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154536182 262 - 158406734 ctttttt------------------------gg-agta-agagtttcactcttgttacccaggctggagtgcaatggcacaatcttgtcggctcactgcaaccttcacctcccgggttcaagcgattctcctgccacagcctaccaagtagctgggattacagcatgtgccaccatgcctggctaattttgtgtttttagtagagacaggatttcactatgttgaccgggctggtcttgaactcttgacct-gggtgatccgcccacttgggcctcccaaagtgttggg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368618 277 -   2682657 cttttttttttt----------ttttttttcgg-agta-agggttttgctcttgttacccaggttggagtgcaatggcacaatcttgttggctcactgcaaccttcacgtctcgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacagcctgtgccaccatgcctggctaactttgtgtttttagtagagacgggatttcactatgttggccgggctggtgtcgaactcctgacctcgggtgatctgcccaccttggcctcccagagcgttggg
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       394865 268 -   2086007 cttttttttttt-------------------gg-agtg-agagtttcactcttgttacccaggttggagtgcaatggcacaatcttgttggctcactgcaaccttcacctcccgggttcaagtgattctcctgcctcagcctcccaagtcgctgggattacagcatgtgccaccatgcctggctaattttgtgtttttagtagagacgggatttcactatgttggccgggctggtctcaaactcctcaccttgggtgatccgcccaccttggcctcccaaagtgtttgg
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       455718 287 +   3831555 cttttcttttcttttcttttttttttttTTTGG-AATA-Agagttttgctcttgttacccaggctggagtgcaatggcacaatcttgtcggcttattgcaacctttacctcccgggttcaagcgattctcctgcctcagcctcccaagtagctaggattacagcatgtgccaccatgcctggctaattttgtgtttttagtagagacgagatttcactatgttggccgggctggtctcgaactcctgacctcgggtgatccgcccaccttggcctcccaaagtgttggg
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56154241 425 + 145441459 I
e proCoq1.NW_012148396v1     13527727  35 +  16154928 I
e dasNov3.JH562051             439522 306 +    563711 I
e canFam3.chr3               60055480  23 -  91889043 I
e otoGar3.GL873689             476153 129 +   3845361 I
e panPan2.chr15              74127427 1060 -  99763055 M

a score=312696.000000
s hg38.chr15_KI270851v1_alt    206788 36 +    263054 attacaggcgtgagccaccgtgcccggccTGACTAT
s panTro5.chr15               9593882 36 +  83230942 attacaggcgtgagccaccgtgcccggccTGACTAT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       171552 36 -    281578 attacaggcgtgagccaccgtgcccggccTGACTAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71034420 36 + 121039945 attacaggcgtgagccaccatgcccggccTGACTAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164340928 36 - 169600520 attacaggtgtgagccactgtgcctggccTGACTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661892 36 - 171882078 attacaggtgtgagccactgtgcctggccTGACTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       516994 36 +   2379783 attacaggtgtgagccactgtgcctggccTGACTAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       473454 36 +   4116138 attacaggtgtgagccactgtgcctggccTGACTAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53906052 36 +  58131712 attacaggtgtgagctactgtgcctggccTAACTAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       526188 36 -   3636681 attacaggtgtgagccactgtgcctggccTGACTAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505774 36 -   4457520 attacagatgtgagccactgtgcctggccTGACTAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154536444 36 - 158406734 attacaggtgtgagccactgtgtatggccTGACTGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368895 36 -   2682657 attacaggtgtgagccactgtgtacggccTGACTGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       395133 36 -   2086007 attacaggtgtgagccactgtgtatggccTGACTAT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       456005 36 +   3831555 attacagatgtgagccactgtgtacggccTGACTAT
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60055503 13 -  91889043 ATTACAGAAATGA-----------------------
i canFam3.chr3              I 23 C 0
e mm10.chr7                  56154241 425 + 145441459 I
e proCoq1.NW_012148396v1     13527727 35 +  16154928 I
e dasNov3.JH562051             439522 306 +    563711 I
e otoGar3.GL873689             476153 129 +   3845361 I
e panPan2.chr15              74127427 1060 -  99763055 M

a score=10920.000000
s hg38.chr15_KI270851v1_alt    206824 1 +    263054 A
s panTro5.chr15               9593918 1 +  83230942 A
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       171588 1 -    281578 A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71034456 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164340964 1 - 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661928 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       517030 1 +   2379783 A
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       473490 1 +   4116138 A
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53906088 1 +  58131712 A
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       526224 1 -   3636681 A
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505810 1 -   4457520 A
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154536480 1 - 158406734 A
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368931 1 -   2682657 A
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       395169 1 -   2086007 A
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       456041 1 +   3831555 A
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56154666 1 + 145441459 A
i mm10.chr7                 I 425 C 0
e proCoq1.NW_012148396v1     13527727 35 +  16154928 I
e dasNov3.JH562051             439522 306 +    563711 I
e canFam3.chr3               60055516 0 -  91889043 C
e otoGar3.GL873689             476153 129 +   3845361 I
e panPan2.chr15              74127427 1060 -  99763055 M

a score=297684.000000
s hg38.chr15_KI270851v1_alt    206825 39 +    263054 TTTTCTATAAAGTACTCTTTTTTAT--TATTATAGGAATAT
s panTro5.chr15               9593919 39 +  83230942 TTTTCTATAAAGTACTCTTTTTTAT--TATTATAGGAATAT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       171589 39 -    281578 TTTTCTATAAAGTACTCTTTTTTAT--TATTATAGGAATAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71034457 39 + 121039945 TTTTCTATAAAGTACTCTTTTTTAT--TATTATAGGAATAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164340965 39 - 169600520 TTTTCTATAAAGTACTCTTTTTTAT--TTTTATAGGAATAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661929 39 - 171882078 TTTTCTATAAAGTACTCTTTTTTAT--TTTTATAGGAATAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       517031 39 +   2379783 TTTTCTATAAAGTACTCTTTTTTAT--TTTTATAGGAATAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       473491 39 +   4116138 TTTTCTATAAAGTACTCTTTTTTAT--TTTTATAGGAATAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53906089 39 +  58131712 TTTTCTATAAAGTACTCTTTTTTAT--TTTTATAGGAATAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       526225 39 -   3636681 TTTTCTATAAAGTACTCTTTTTTAT--TTTTATAGGAATAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505811 39 -   4457520 TTTTCTATACAGTACTCTTTTTTAT--TGTTATAGGAATAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154536481 39 - 158406734 TTTTCTATGAAGGAAATATAttttt--tattataaaaatat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368932 39 -   2682657 TTTTCTATGAAGGAAATACACTTTT--TATTATAGGAATAT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       395170 39 -   2086007 TTTTCTATGAAAGAAATGTATTTTT--TATTATAGGAATAT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       456042 39 +   3831555 TTTTCTATGAAGGAAATATATTTTT--TATTATAGGAATAT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             476282 38 +   3845361 TTTTCTACAAACTACT-GTTTTGAT--TATTGCAGGAATAT
i otoGar3.GL873689          I 129 C 0
s mm10.chr7                  56154667 41 + 145441459 TTTTTAATAAAATAAGTGTTTTGGTTATATTAAAGGAATAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60055516  2 -  91889043 -------------------------------------AT--
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13527727 35 +  16154928 I
e dasNov3.JH562051             439522 306 +    563711 I
e panPan2.chr15              74127427 1060 -  99763055 M

a score=1291310.000000
s hg38.chr15_KI270851v1_alt    206864 109 +    263054 ATACATGTTGTAGAAAACTTGAAGTATATAGAAAATATCTGAGAAGATAGTAACCACCACACTGATGTAATTATTGTTGACAGGTTTGTAAAGAA--AAATTAAT------ATAGAT
s panTro5.chr15               9593958 109 +  83230942 ATACATGTTGTAGAAAACTTGAGGTATATAGAAAATACCTGAGAAGATAGTAACCACCACACTGATGTAATTATTGTTGACAGGTTTGTAAAGAA--AAATTAAC------ATAGAT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       171628 109 -    281578 ATACATGTTGTAGAAAACTTGAAGTATATAGAAAATATCTGAGAAGATAGTAACCACCACACTGATGTAATTATTGTTGACAGGTTTGTAAAGAA--AAATTAAT------ATAGAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71034496 108 + 121039945 ATACATGTTGTAGAAAACTTGAAGTATATAGAAAATATCTGAGAAGATAGTAATCACCACACTGATGTAATTATTGTTGACAGGTTTGTAAAGAA--AAATTAAT------ATAAA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164341004 109 - 169600520 ATACATGTTGTAGAAAACTTGAAGTATATAGAAAATACCTGAGAAGATAGTAACCACCATACTGATGTAATTATTGTTGACAGATTTGTAAAGAA--AAATTAAT------GTAGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165661968 109 - 171882078 ATACATGTTGTAGAAAACTTGAAGTATATAGAAAATACCTGAGAAGATAGTAACCACCATACTGATGTAATTATTGTTGACAGATTTGTAAAGAA--AAATTAAT------GTAGAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       517070 106 +   2379783 ATACATGTTGTAGAAAACTTGAAGTATATAGAAAATACCT---AAGATAGTAACCACCATACTGATGTAATTATTGTTGACAGATTTGTAAAGAA--AAATTAAT------GTAGAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       473530 109 +   4116138 ATACATGTTGTAGAAAACTTGAAGTATATAGAAAATACCTGAGAAGATAGTAACCACCATATTGATGTAATTATTGTTGACAGATTTGTAAAGAA--AAATTAAT------GCAGAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53906128 109 +  58131712 ATACATGTTGTAGAAAACTTGAAGTATATAGAAAATACCTGAGAAGATAGTAACCACCACACTGATGTAATTATTGTTGACAGATTTGTAAAGAA--AAATTAAT------GTAGAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       526264 109 -   3636681 ATACATGTTGTAGAAAACTTGAAGTATATAGAAAATACCTGAGAAGATAGTAACCACCATACTGATGTAATTATTGTTGACAGATTTGTAAAGAA--AAATTAAT------GTAGAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505850 109 -   4457520 ATACATGTTGTAGAAAACTTGAAGTATATAGAAAATACCTGAGAAGATAGTAACCACCACACTGATGTAATTATTGTTGACAGATTTGTAAAGAA--AAATTAAT------GTAGAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154536520 109 - 158406734 atacatgttgtagaaaacttgaaatatatagaaaatacctgagaaaataataaccacAACAATGATGTAATTATCGTTGACAGGTTTGTAAAGAA--AAATTGAT------ATAGAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             368971 109 -   2682657 ATACAAGTTGTAGAAAACTTGAAATATATAGAAAATACTAGAGAAGATAATAACCACAACAATGATGTAAGTATTGTTGACAGGTTTGTAAAGAA--AAATTAGT------ACAGAT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       395209 106 -   2086007 ATACATGTTGTAGAAAACTTGAAATATATAGAAAATACCTGAGAAG---ATAACCACAACAATGATGTAATTATTGTTGACAGGTTTGTAAAGAA--AAACTAAT------ATAGAT
i cebCap1.NW_016107707v1    C 0 I 11
s aotNan1.NW_018503298v1       456081 109 +   3831555 ATACGTGTTGTGGAAAACTTGAAATATATAGAAAATACCTGAGAAGATAATAACCACAACAATGATGTAATTATTGTTGACAGGTTTGTAAAGAA--AAATTAAT------ATAGAT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13527762 108 +  16154928 ATATATGTTGTAGAAAATTTGAAGCGTATGGAAAATACTTAAGAAGATAATAA-------CCTGATGTAATTATTGTTGACAAGTTGGTAGAGAA--AAATTAATATATTAATAGAT
i proCoq1.NW_012148396v1    I 35 C 0
s otoGar3.GL873689             476320 105 +   3845361 ----ATATTGTGGAAAATTTGATGTGTATAGAAAATACCTAAGAAGATAATAACCATCACCCTGATGTGATTATTGTTGACAAATTGGTAAAGGA--AAATCAAT------GCAGAT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56154708  99 + 145441459 ATACA---TGTAGAAAATTTCGAATTTACAGAAAATTTCTTAGATTATAACAGTCACC---CTGATG----TATTACTGACAACTGGTTATGAAA--ACATTAAT------ATAGAT
i mm10.chr7                 C 0 I 13
s canFam3.chr3               60055518 102 -  91889043 ATACATGTTGTAGAAAATTTGAAATGCATAGAAAATGCCTGAGA--ATTATGCCC-------TGACATAATTATTGTTGACAAGTTGTTAAAGAAACAAATTAAT------TTAGGT
i canFam3.chr3              C 0 C 0
e dasNov3.JH562051             439522 306 +    563711 I
e panPan2.chr15              74127427 1060 -  99763055 M

a score=89678.000000
s hg38.chr15_KI270851v1_alt    206973 18 +    263054 TATACTTAT---TATATGTGT
s panTro5.chr15               9594067 18 +  83230942 TATACTTAT---TATATGTGT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       171737 18 -    281578 TATACTTAT---TATATGTGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71034604 13 + 121039945 -----TTAT---TATATGTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164341113 18 - 169600520 TATACTTAC---TATATGTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165662077 16 - 171882078 TATACTTAC---TATATGT--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       517176 18 +   2379783 TATACTTAC---TATATGTGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       473639 18 +   4116138 TATACTTAC---TGTATGTGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53906237 18 +  58131712 TATACTTAC---TATATGTGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       526373 18 -   3636681 TATACTTAC---TATATGTGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505959 18 -   4457520 TATACTTAC---TATATGTGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154536629 14 - 158406734 GGTATGTAA---TGTAT----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             369080  6 -   2682657 --------A---TGCAC----
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       456190 14 +   3831555 GATATGTAA---TGTAT----
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13527870 18 +  16154928 TGTATTTAT---TATATGTGT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             476425 18 +   3845361 AATATTTAT---TATATGTAT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56154820 21 + 145441459 tatacatacatatatatatat
i mm10.chr7                 I 13 C 0
s canFam3.chr3               60055620 15 -  91889043 TATGTTCAC----ATATGT--
i canFam3.chr3              C 0 C 0
e dasNov3.JH562051             439522 306 +    563711 I
e cebCap1.NW_016107707v1       395315 11 -   2086007 I
e panPan2.chr15              74127427 1060 -  99763055 M

a score=959831.000000
s hg38.chr15_KI270851v1_alt    206991 101 +    263054 AAATCTCTATCC-------TGCCTTTAATGTCATTTTAAAAAAT-------GATTATTCTCAGCTAT-AAAAAGGCTTA-CGGGTATGTGTGGC-ATTTCAGGATTAAG-CCCATGGTT
s panTro5.chr15               9594085 101 +  83230942 AAGTCTCTATCT-------TGCCTTTAATGTCATTTTAAAAAAT-------GCTTATTCTCAGCTAT-AAAAAGGCTTA-CGGGTATGTGTGGC-ATTTCAGGATTAAG-CCCATGGTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       171755 101 -    281578 AAATCTCTATCC-------TGCCTTTAATGTCATTTTAAAAAAT-------GCTTATTCTCAGCTAT-AAAAAGGCTTA-CGGGTATGTGTGGC-ATTTCAGGATTAAG-CCCATGGTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71034617 101 + 121039945 AAGTCTCTATCT-------TGCCTTTAATGTCATTTTAAAAAAC-------GATTATTCTCAGCTAT-AAAAAGGCTTA-TGGGTATGTGTGGC-ATTTCAGGATTAAA-CCCATGGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164341131 101 - 169600520 AAGTCTGTATCT-------TGCCTTTAATATCATTTTAAAAAAT-------GATTATTCTCAGCTCT-AAAAAGGCTTA-TGGGTATGTGTGGC-ATTTCAGGATTAAG-CCCATGGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165662093  99 - 171882078 --GTCTGTATCT-------TGCCTTTAATATCATTTTAAAACAT-------GATTATTCTCAGCTCT-AAAAAGGCTTA-TGGGTATGTGTGGC-ATTTCAGGATTAAG-CCCATGGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       517194 101 +   2379783 AAGTCTGTATCT-------TGCCTTTAATATCATTTTAAAAAAT-------GATTATTCTCAGCTCT-AAAAAGGCTTA-TGGGTATGTGTGGC-ATTTCAGGATTAAG-CCCATGGTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       473657 101 +   4116138 AAGTCTGTATCT-------TGCCTTTAATATCATTTTAAAAAAT-------GATTATTCTCAGCTCT-AAAAAGGCTTA-TGGGTATGTGTGGC-ATTTCAGGATTAAG-CCCATGGTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53906255 101 +  58131712 AAGTCTATATCT-------TGCCTTTAATATCATTTTAAAAAAT-------GATTATTCTCAGCTCT-AAAAAGGCTTA-TGGGTATGTGTGGC-ATTTCAGGATTAAG-CCCATGGTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       526391 101 -   3636681 AAGTCTGTATCT-------TGCCTTTAATATCATTTTAAAAAAT-------GATTATTCTCAGCTCT-AAAAAGGCTTA-TGGGTATGTGTGGC-ATTTCAGGATTAAG-CCCATGGTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       505977 101 -   4457520 AAGTCTACATCT-------TGCCTTTAATATCATTTTAAAAAAT-------GATTATTCTCAGCTCT-AAAAAGGCTTA-TGGGTATGTGTGGC-ATTTCAGGATTAAG-CCCATGGTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154536643  99 - 158406734 AAGTCTGCATGT-------TGCCTTCAGTGTTGTTTAAAATAA----------TTATTCTCAGCTATCAAAAAGATGTA-TGGGTATGTGTGGC-GTTTCAGGAGGAAG-CCCATGGCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             369086  97 -   2682657 AAGTCTGCATGT-------TGCCTTTAATGTCATTTCAAAAAA----------TTATTTTCAGCTAT-AAAAAGGTTTA-TGGGTATGTGTGGC-GTTTGAGGAGGAAG-CCCATGG-T
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       395326  98 -   2086007 AAGTCTGCATGT-------TGCCTTTAATGCCATTTAAAAAAA----------TTATTTTCAGCTAT-AAAAAGGTTTA-TGGGTATGTGTGGC-ATTTCAGGAGGAAG-CCCATGGTT
i cebCap1.NW_016107707v1    I 11 C 0
s aotNan1.NW_018503298v1       456204  98 +   3831555 CAGTCTGCATGT-------TGCTTTTAATGTCATTTAAAACAG----------TTATTCTCAGCTAT-AAAAAGGTCTA-TGGGTATGTGTGGC-ATTTCAGGAGGAAG-CCCGTGGTT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13527888 100 +  16154928 AAGTCTCTATAT-------TGCCTTTAATGGCATATTTTGAA----------ATTATTCTCAGATGG-AAAAAGACTTGCTGGGTATATGTGGT-ATTTCAGAATTAAGACTCATGGTT
i proCoq1.NW_012148396v1    C 0 I 69
s otoGar3.GL873689             476443 103 +   3845361 AAGTTTCTAACT-------TGTCTTTAATGGCATCTTTTGAAAT-------GATCATTCTCTTACAG-AAAAAAACTTACTGGGCATATGTGGT-GTTTCAGAATTAAGAAGCGTGGTT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56154841 106 + 145441459 acatatatatatataCACACACCTTTA---TCATTCTGAGGTATCTTTCAGAATTATTCTCAGATG--GACATGACTTG--GGGTTTGTGTG----TTTAAATTTAGGG-TTCATGCT-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60055635 102 -  91889043 ATGTCTCTGTTT-------TGCCTT-GATGTCATCATTTAAAAT-------GATTATTCTCGGATGT-AAGAAGACTTA-CGGATATGTGTGATAATTTCAGAATTAAGATTCATGGTT
i canFam3.chr3              C 0 C 0
e dasNov3.JH562051             439522 306 +    563711 I
e panPan2.chr15              74127427 1060 -  99763055 M

a score=121664.000000
s hg38.chr15_KI270851v1_alt    207092 12 +    263054 TTGATGACTTTC
s panTro5.chr15               9594186 12 +  83230942 TTGATGACTTTC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       171856 12 -    281578 TTGATGACTTTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71034718 12 + 121039945 TTGATGACTTTC
i nomLeu3.chr6              C 0 M 100
s rheMac8.chr7              164341232 12 - 169600520 TTGATGACTTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165662192 12 - 171882078 TTGATGACTTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       517295 12 +   2379783 TTGATGACTTTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       473758 12 +   4116138 TTGATGACTTTC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53906356 12 +  58131712 TTGATGACTTTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       526492 12 -   3636681 TTGATGACTTTC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       506078 12 -   4457520 TTGATGACTTTC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154536742 12 - 158406734 CTGATGACTTTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             369183 12 -   2682657 TTGATGACTTTG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       395424 12 -   2086007 TTGATGACTTCC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       456302 12 +   3831555 TTGATGACTTTG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             476546  9 +   3845361 ---ATAGCTTTG
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56154947 12 + 145441459 CTAATACGTCTC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60055737 12 -  91889043 ATGATAATTTTT
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13527988 69 +  16154928 I
e dasNov3.JH562051             439522 306 +    563711 I
e panPan2.chr15              74127427 1060 -  99763055 M

a score=468154.000000
s hg38.chr15_KI270851v1_alt    207104 58 +    263054 AGAACGTTTCATTTGTTAGTCATATTGGCCACACTCTGACAGCTTCTGTGTCCTCTCC--
s panTro5.chr15               9594198 58 +  83230942 AGAACGTTTCATTTATTAGTCATATTGGCCACACTCTGACAGCTTCTATGTCCTCTCC--
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       171868 58 -    281578 AGAACGTTTCATTTGTTAGTCATATTGGCCACACTCTGACAGCTTCTGTGTCCTCTCC--
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164341244 58 - 169600520 AGAATGTTTCATTTGTTAGTCATATTGGCTGCATGCTGACAGCTTCTGTGTCCTCTCC--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165662204 58 - 171882078 AGAATGTTTCATTTGTTAGTCATATTGGCTGCATGCTGACAGCTTCTGTGTCCTCTCC--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       517307 58 +   2379783 AGAATGTTTCATTTGTTAGTCATATTGGCCGCATGCTGACAGCTTCTGTGTCCTCTCC--
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       473770 58 +   4116138 AGAACGTTTCATTTGTTAGTCATATTGGCCACATGCTGACAGCTTCTGTGTCCTCTCC--
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53906368 58 +  58131712 AGAATGTTTCATTTGTTAGTCATATTGGCCGCATGCTGACAGCTTCTGTGTCCTCTCC--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       526504 58 -   3636681 AGAACGTTTCATTTGTTAGTCATATTGGCCGCATGCTGACAGCTTCTGTGTCCTCTCC--
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       506090 58 -   4457520 AGAACGTTTCATTTGTTAGTCATATTGGCCGCATGCTGACAGCTTCTGTGTCCTCTTC--
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154536754 55 - 158406734 AGGGCGTTTCATTTGTTACTGGTATTGGCTGC-CGCTGACAGC--CTGTGTTCTCTCC--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             369195 56 -   2682657 AGAGCGTCTCGTTTGTTATTGGTACTGGCTGCACACTGACAGC--TTCTGTTCTCTCC--
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       395436 58 -   2086007 AGAGCGTTTCATTTGTTATTCGTATTGGCTGCACGCTGACAGCTTCTGTGTTCTCTCC--
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       456314 58 +   3831555 AGAGCATTTCATTTGTTATTCATATAGGCTGCACACTGACAGCTTCTGTGTTCTCTCC--
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             476555 57 +   3845361 GGAATGTTTTATTTGTTCATTTCCTTGGCCACATG-TGAAGGTTTCTGTGCTCTCTCC--
i otoGar3.GL873689          C 0 I 2
s mm10.chr7                  56154959 51 + 145441459 AGA-----CTATACATTAACCTCACCAGCAAC--TCTGACGGTTTCTGTGCTCTCTCA--
i mm10.chr7                 C 0 I 2
s canFam3.chr3               60055749 60 -  91889043 AGAACATTTCATTTGTTCATTTCATCGGACAGTCTTTGATGGTTTCTGTGTTCTTGCTTT
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012148396v1     13527988 69 +  16154928 I
e dasNov3.JH562051             439522 306 +    563711 I
e nomLeu3.chr6               71034730 100 + 121039945 M
e panPan2.chr15              74127427 1060 -  99763055 M

a score=68003.000000
s hg38.chr15_KI270851v1_alt    207162 5 +    263054 AGCTC
s panTro5.chr15               9594256 5 +  83230942 AGCTC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       171926 5 -    281578 AGCTC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164341302 5 - 169600520 AGCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165662262 5 - 171882078 AGCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       517365 5 +   2379783 AGCTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       473828 5 +   4116138 AGCTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53906426 5 +  58131712 AGCTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       526562 5 -   3636681 AGCTC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       506148 5 -   4457520 AGCTC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154536809 5 - 158406734 AGCTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             369251 5 -   2682657 AGCTC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       395494 5 -   2086007 AGCTC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       456372 5 +   3831555 AGCTC
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13528057 5 +  16154928 AGCTC
i proCoq1.NW_012148396v1    I 69 C 0
s otoGar3.GL873689             476614 5 +   3845361 AGCTC
i otoGar3.GL873689          I 2 C 0
s mm10.chr7                  56155012 5 + 145441459 AGCTC
i mm10.chr7                 I 2 C 0
s canFam3.chr3               60055809 5 -  91889043 AGCTA
i canFam3.chr3              C 0 C 0
e dasNov3.JH562051             439522 306 +    563711 I
e nomLeu3.chr6               71034730 100 + 121039945 M
e panPan2.chr15              74127427 1060 -  99763055 M

a score=2319549.000000
s hg38.chr15_KI270851v1_alt    207167 178 +    263054 CCTGCCGTGGCCTTTAATGTGAACAACCTGCCCTTCACAGAGCCCATGCTGTCTGTCTGGGCTCAGTTGGTGAACCTCGCTGGAAGCAAGTTAGAAAAGCACAAAATAAAGAAATCGACTAAACAGGCCTTT-GCAGGTCAGTACATGGCGCTTCTTGATGAAATAGCTGCCGTCTTAA
s panTro5.chr15               9594261 178 +  83230942 CCTGCCGTGGCCTTTAATGTGAACAACCTGCCCTTCACAGAGCCCATGCTGTCTGTCTGGGCTCAGTTGGTGAACCTCGCTGGAAGCAAGTTAGAAAAGCACAAAATAAAGAAATCGACTAAACAGGCCTTT-GCAGGTCAGTACATGGTGCTCCTTGATGAAATAGCTGCCGTCTTAA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       171931 178 -    281578 CCTGCCGTGGCCTTTAATGTGAACAACCTGCCCTTCACAGAGCCCATGCTGTCTGTCTGGGCGCAGTTGGTGAACCTCGCTGGAAGCAAGTTAGAAAAGCACAAAATAAAGAAATCGACTAAACAGGCCTTT-ACAGGTCAGTACATGGTGCTTCTTGATGAAATAGCTGCCATCTTAA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164341307 178 - 169600520 CCTGCTGTGGCCTTTAATGTGAACAACCTGCCCTTCACAGAGCCCATGCTGTCTGTCTGGGCTCAGTTGGTGAACCTCGCTGGAAGCAAGTTAGAAAAGCACAAAATAAAGAAATCTACTAAACAGGCCTTT-ACAGGTCAGTACATGGTGCTGCTTGATGAAATAGCTGCCGTCTTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165662267 178 - 171882078 CCTGCTGTGGCCTTTAATGTGAACAACCTGCCCTTCACAGAGCCCATGCTGTCTGTCTGGGCTCAGTTGGTGAACCTCGCTGGAAGCAAGTTAGAAAAGCACAAAATAAAGAAATCTACTAAACAGGCCTTT-ACAGGTCAGTACATGGTGCTGCTTGATGAAATAGCTGCCGTCTTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       517370 178 +   2379783 CCTGCTGTGGCCTTTAATGTGAACAACCTGCCCTTCACAGAGCCCATGCTGTCTGTCTGGGCTCAGTTGGTGAACCTCGCTGGAAGCAAGTTAGAAAAGCACAAAATAAAGAAATCTACTAAACAGGCCTTT-ACAGGTCAGTACATGGTGCTGCTTGATGAAATAGCTGCCGTCTTAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       473833 178 +   4116138 CCTGCTGTGGCCTTTAATGTGAACAACCTGCCCTTCACAGAGCCCATGCTGTCTGTCTGGGCTCAGTTGGTGAACCTCGCTGGAAGCAAGTTAGAAAAGCACAAAATAAAGAAATCTACTAAACAGGCCTTT-ACAGGTCAGTACATGGTGCTGCTTGATGAAATAGCTGCCGTCTTAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53906431 178 +  58131712 CCTGCTGTGTCCTTTAATGTGAACAACCTGCCCTTCACAGAGCCCATGCTGTCTGTCTGGGCTCAGTTGGTGAACCTCGCTGGAAGCAAGTTAGAAAAGCACAAAATAAAGAAATCTACTAAACAGGCCTTT-ACAGGTCAGTACATGGTGCTGCTTGATGAAATAGCTGCCGTCTTAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       526567 178 -   3636681 CCTGCTGTGGCCTTTAATGTAAACAACCTGCCCTTCACAGAGCCCATGCTGTCTGTCTGGGCTCAGTTGGTGAACCTCGCTGGAAGCAAGTTAGAAAAGCACAAAATAAAGAAATCTACTAAACAGGCCTTT-ACAGGTCAGTACATGGTGCTGCTTGATGAAATAGCTGCCGTCTTAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       506153 178 -   4457520 CCTGCTGTGGCCTTTAATGTGAACAACCTGCCCTTCACGGAGCCCATGCTGTCTGTCTGGGCTCAGTTGGTGAACCTTGCTGGAAGCAAGTTAGAAAAGCACAAAATAAAGAAATCTACTAAACAGGCCTTT-ACAGGTCAGTACATGGTGCTGCTTAATGAAATAGCTGCCGTCTTAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154536814 177 - 158406734 CCCGCCGTGGCCTTTACTGTGAACAACCTGCCCTTCACAGAGCCCATGCTGTCTGTCTGGGCTCAGTTGGTGAACCTCGCTGGAAGCAAGTTAGAAAAGCACAAAGTAAAGAAATCGACTAAACAGGCCTTT-GCAGGTCAGTATTTGGTGCGTCTTG-TGAAACAGCTGCCGTCTTAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             369256 177 -   2682657 CCTGCCGTGGCCTTTAACGTGAACAACCTGCCCTTTGCAGAGCCCATGCTGTCTGTCTGGGCTCAGCTGGTGAACCTCGCTGGAAGCAAGTTAGAAAAGCACAAAGTACAAAAATCAACTAAACAGGCCTTT-GCAGGTCAGTGTTCGGTGCTTCTTG-TGAAACAGCTGCCAGCTTAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       395499 177 -   2086007 CCTGCCGTGGCCTTTAATGTGAACAACCTGCCCTTCGCAGAGCCCATGCTGTCTGTCTGGGCTCAGCTGGTGAACCTCGCTGGAAGCAAGTTAGAAAAGCACAAAATAAAGAAATCGACTAAACAGGCCTTT-GCAGGTCAGGGTTTGCTGCTTCCTG-TGAAACAGCTGCCGTCTTAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       456377 177 +   3831555 CCTGCCATGGCCTTTAATGTGAACAACCTGCCTTTCACAGAGCCCATGCTGTCTGTCTGGGCTCAGTTGGTGAACCTCGCTGGAAGCAAGTTAGAAAAGCACAAAATAAAGAAATCGACTAAACAGGCCTTT-GCAGGTCAGTATTTGGTGCTTCTTG-TGAAGCAGCTGCCGTCTTAA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13528062 178 +  16154928 CCTGCTGTGGCGTTCAATGTGAACAACCTGCCTTTCACAGAGCCCATGCTCTCTGTCTGGGCTCAGCTGGTGAACCTCGCTGGAAGCAAATTGGAAAAGCACAAAATAAAGAAATCACCTAAACAGGCCTTT-GCAGGTCAGTACGTGGTGCTTCTTGATGCAAAAGCTACAGTCTTAA
i proCoq1.NW_012148396v1    C 0 I 75
s otoGar3.GL873689             476619 162 +   3845361 CCTGCCATGGCGTTCAGCGTGCACAACCTGCCTTTCACGGAGCCCATGCTCTCCGTCTGGGCTCAGCTGGTGAACCTCGCTGGGAGCAAACTGGAAAAGCACAAAATAAAGAAATCACGGAAGCAAGACTTT-GCAGGTCAGTGTGTGGGACTT----------------GGGTCTTCA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56155017 171 + 145441459 CCTGCTGTGGCCTTTAGTGTGAACAATTTGCCTTTCACGGAGCCTATGCTTTCTGTCTGGGCTGAGTTGGTGAATCTTGCTGGAAGCAAATTGGAAAAGCACAAAACAAAGAAGTCAGCAAAACCGGCCTTT-GCAGGTGAGTATATAGTGCTCCGTGGTGAAGTAGTCAGA-------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60055814 177 -  91889043 CCTGCCGTGGCATTCAGCGTCATCAACCTGCCCTTCACAGAGCCCATGCTGTCTGTCTGGGCTCAATTGGTAAACCTCGCCGGAAGCAAATTAGAAAAGCATAAAGTAAAAAAATCACCTAAACAGGGTTTT-GCAGGTCAGTACATGGTGCTTCGTGATGAATTAGGTACAGTCTTA-
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             439828 172 +    563711 CCTGCTGTGGCATTCAGTGTGACCAACCTGCCTTTCACAGAGCCCATGCTGTCTGTCTGGGCTCAGTTGGTAAACCTTGCTGGAAGCAAATTAGAAAAGCACAAAATAAAGAAATCACCCAAACAGGCCTTTCGCAGGTCAGTACATGGTCTTTCTTGATGATAAAGTTGTC-------
i dasNov3.JH562051          I 306 C 0
e nomLeu3.chr6               71034730 100 + 121039945 M
e panPan2.chr15              74127427 1060 -  99763055 M

a score=637377.000000
s hg38.chr15_KI270851v1_alt    207345 79 +    263054 ACTCGTGTGGTTTGTACAGTGTTC----TTTTAT---GAGTGAATTCACGGACGTACTAAAGTCCTGGGGTTCACGTGGGCTCACC
s panTro5.chr15               9594439 79 +  83230942 ACTCGTGTCGTTTGTACAGTGTTC----TTTTAT---GAGTGAGTTCACGGACGTGCTAAGGTCCTGGGGTCCACGTGGGCTCACC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       172109 79 -    281578 ACTCGTGTCGTTTGTACAGTGTTC----TTTTAT---GAGTGAATTCACAGACGTGCTAAAGTCCTCGGGTTCACGTGGGCTCACC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164341485 79 - 169600520 ATTCATGTTGTTTGTACAGTGTTC----TTTCAC---GAGTGAGTTCACAGGCCTGCTAAAGTCCTGGGGTTCACGTGGGCTCACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165662445 79 - 171882078 ATTCATGTTGTTTGTACAGTGTTC----TTTCAC---GAGTGAGTTCACAGGCCTGCTAAAGTCCTGGGGTTCACGTGGGCTCACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       517548 79 +   2379783 ATTCATGTTGTTTGTACAGTGTTC----TTTCAC---GAGTGAGTTCACAGGCCTGCTAAAGTCCTGGGGTTCACGTGGGCTCACC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       474011 79 +   4116138 ATTCATGTTGTTTGTACAGTGTTC----TTTCAC---GAGTGAGTTCACGGGCCTGCTAAAGTCCTGGGGTTCACGTGGGCTCACC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53906609 79 +  58131712 ATTCATGTTGTTTGTACAGTGTTG----TTTCAT---GAGTGAGTTCACGGGCCTGCTAAAGTCCTGGGGTTCACGTGGGCTCACC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       526745 79 -   3636681 ATTCATGTTGTTTGTACAGTGTTC----TTTCAC---GAGTGAGTTCACGGGCCTGCTAAAGTCCTGGGGTTCACGTGGGCTCACC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       506331 79 -   4457520 ATTCGTGTTGTTTGTACAGTGTTC----TTTCAC---GAGTGAGTTCACGGGCCTGCTAAAGTCCTGGGGTTCATGTGGGCTCACC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154536991 79 - 158406734 ACTAGTGTTGTTTGTACTGTGTTC----TTTTGT---GGGTGAGTTCATGGGCCTGCTAACATCCTGGGGTTCATGTGGGCTCACT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             369433 76 -   2682657 ACGAGTGTTGTTTGTGCTGTGTTC-------CGT---GAGTGAGTTCACGGGCCCGCTAACGTCCTGGGGTTCACGTGGGCTCACC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       395676 79 -   2086007 ACTCGTGTTGTTTGTACTGTGTTC----TTTGGT---GAGTGAGTTCCCAGGCCTGCCAACGTCCTGGGGTTCACGTGGGCTCACC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       456554 79 +   3831555 ACTAGTGTTGTTTGTGCTGTGTTC----TTTTAT---GAGTGAGTTCACGGGCCTGCTGATGTCCTGGGGTTCACGTGGGTTCATC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             476781 72 +   3845361 -CTAGTGTTGTTTGGACGGTGTTT----GTCCTT---TGG-GAGTTGGTATGACTGCTGGAGTCT-----TTCATGTGGAGTTAGT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56155188 74 + 145441459 ACGGGCGTCATTTG--------CC----TTTTACTCAGAGTGCATTCATATGACTGCTGAAACCTTGGAGTTCATGTGGATTCAGT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60055991 85 -  91889043 CCTGGCATTGCCTGGACAATGTTTTGCATTTTGT-CAGAGCAAGTTCCTGTCATTGCCAAAGTCTTTGGGTTCCAGTGGATTGACC
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             440000 59 +    563711 ------------TGGACAAT--TA-------------AAGCAAGACCACATCCCAGCCAAAGTCTCTGGGTTCAGATAGATTTAGC
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13528240 75 +  16154928 I
e nomLeu3.chr6               71034730 100 + 121039945 M
e panPan2.chr15              74127427 1060 -  99763055 M

a score=364715.000000
s hg38.chr15_KI270851v1_alt    207424 36 +    263054 ATTTGTTGAGTTGCG--GTTGGGAATGTAACCCTGTGT
s panTro5.chr15               9594518 36 +  83230942 ATTTGTTGAGTTGCG--GTTGGGAAGGTAACCCTGTGT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       172188 36 -    281578 ATTTGTTGCGTTGCG--GTTGGGAATGTAACCCTGTGT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164341564 36 - 169600520 ATTTGTTGAGTTGCA--GTTGGGAGTGTAACTCTGTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165662524 36 - 171882078 ATTTGTTGAGTTGCA--GTTGGGAGTGTAACCCTGTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       517627 36 +   2379783 ATTTGTTGAGTTGCA--GTTGGGAGTGTAACCCTGTGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       474090 36 +   4116138 ATTTGTTGAGTTGCA--GTTGGGAGTGTAACCCTGTGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53906688 36 +  58131712 ATTTGTTGAGTTGCA--GTTGGGAGTGTAACCCTGTGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       526824 36 -   3636681 ATTTGTTGAGTTGCA--GTTGGGAGTGTAACCCTGTGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       506410 36 -   4457520 ATTTGTTGAGTTGCA--GTTGGGAGTGTAACCCTGTGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154537070 36 - 158406734 GTTTGTTGAGTTGTG--GTTGGGAGTATAACCCTGTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             369509 36 -   2682657 GTATGTCGAGTTGTG--GTTGGGAGTGTAGCCCTGTTT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       395755 36 -   2086007 GTTTGTTGAGTTGTG--GTTGGGAGTGTAACCCTGTTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       456633 36 +   3831555 GTTTGTTGAGTTGTG--GTTGGGAGTGTAACTCTGTTT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13528315 36 +  16154928 ATTTGTTGAGTTACA--GTTGGGAATGTAACCTTGTGT
i proCoq1.NW_012148396v1    I 75 I 981
s otoGar3.GL873689             476853 34 +   3845361 GTTTGTTGAGTTACA----TGGGAATATAACTTTGAGT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56155262 30 + 145441459 GCTTATCAGTCTATAATATAGGGAATATAA--------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60056076 34 -  91889043 ATTTGCTAAGTTACA--G-TGGGCATGAAACCTTGAG-
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             440059 36 +    563711 ATTTCTAGAGTTACT--GTTGAGGATGTAACACTGTGC
i dasNov3.JH562051          C 0 C 0
e nomLeu3.chr6               71034730 100 + 121039945 M
e panPan2.chr15              74127427 1060 -  99763055 M

a score=1733669.000000
s hg38.chr15_KI270851v1_alt    207460 243 +    263054 -TCGTGGTA---------ATGA----GTATTTTCGAGTCAGCCTTTGTCGCCATGTTCGGAGCCA-CACTTGAAGA--ACCCCATGGCTCACAC----CCTCTT-CT-CCGTGTCACCCTT-----TATCCCGGA-----------AG------AGAAGTC--TGTTCACCTCTTCCCTCCTC---C--------------------CCTCCATCCCAGGGCCCTGTGGC-CTCGTCACCCTGTTGGACCATGGCTCACAGCCTGTTCTCTGCCGGATCCAG--G-GGCCTCTGTCCCGGAAG-CGCCTGGCTTGCCT
s panTro5.chr15               9594554 245 +  83230942 -TCGTGGTA---------ATGA----GTGTTTTCGAGTCAGCCTTTGTCGCCATGTTCGGAGCCA-CACTTGAAGA--ACCCCATGGCTCACGC----CCTCTT-CT-CCGTGTCATCCTT-----TATCCCAGA-----------AG------AGAAGTCTGTGTTCACCTCTTCCCTCCTA---C--------------------CCTCCATCCCAGGGCCCTGTGGC-CCAGTCACCCTGTTGGACCATGGCGCACAGCCTGTTCTCTGCCGGATCCAG--G-GGCCTCTGTCCCGGAAG-CGCCTGGCTTGCCT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       172224 245 -    281578 -TCGTGGTA---------ATGA----GTATTTTCGAGTCAGCCTTTGTTGCCATGTTCGGAGCCA-CACTTGAAGA--ACCCCATGGCTCACAC----CCTCTT-CT-CCATGTCACCCTT-----TATCCCGGA-----------AG------AGAAGTCTGTGTTCACCTCTTCCCTCCTC---C--------------------CTTCCATCCCAGTGCCCTGTGGC-CCAGTCACCCTGTTGGACCATGGCTCACAGCCTGTTCTCTGCAGGATCCAG--G-GGCCTCTGTCCCGGAAG-CGCCTGGCTTACCT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164341600 246 - 169600520 -TCGTGGTA---------ATGA----CTGTTTTCAAGTCAGCCTTCGTCACCATGCTCGGAGCCA-CACTTAAAGA--ACCCCATGGCTCACAC----CCTCTT-CT-CAGTGTCACCCTT-----TATCCCAGA-----------AG------AAAAGTCTGTGTTCACCTCTTCTCTCCTC---C--------------------CCTCCATCCCAGGGCCCTGTGGC-CCAGTCACCCTGTTGGACCATGGCTCATGGCCTGTTCCCTGCCAGATCCAG--G-GGCCTCTGTCCTGGAAGCCACCTGGCTTGCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165662560 246 - 171882078 -TCGTGGTA---------ATGA----CTGTTTTCAAGTCAGCCTTCGTCACCATGCTCGGAGCCA-CACTTAAAGA--ACCCCATGGCTCACAC----CCTCTT-CT-CAGTGTCACCCTT-----TATCCCAGA-----------AG------AAAAGTCTGTGTTCACCTCTTCTCTCCTC---C--------------------CCTCCATCCCAGGGCCCTGTGGC-CCAGTCACCCTGTTGGACCATGGCTCATGGCCTGTTCCCTGCCAGATCCAG--G-GGCCTCTGTCCTGGAAGCCACCTGGCTTGCTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       517663 246 +   2379783 -TCGTGGTA---------ATGA----CTGTTTTCAAGTCAGCCTTCGTCACCATGCTCGGAGCCA-CACTTAAAGA--ACCCCATGGCTCATAC----CCTCTT-CT-CAGTGTCACCCTT-----TATCCCAGA-----------AG------AAAAGTCTGTGTTCACCTCTTCTCTCCTC---C--------------------CCTCCATCCCAGggccctgtggc-ccagtcaccctgttggaccatggctcatggcctgttccctgCCAGATCCAG--G-GGCCTCTGTCCTGGAAGCCACCTGGCTTGCTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       474126 246 +   4116138 -TCGTGGTA---------ATGA----CTGTTTTCAAGTCAGCCTTCGTCACCATGCTCGGAGTCA-CACTTAAAGA--ACCCCATGGCTCACAC----CCTCTT-CT-CAGTGTCACCCTT-----TATCCCAGA-----------AG------AAAAGTCTGTGTTCACTTCTTCTCTCCTC---C--------------------CCTCCATCCCAGggccctgtggc-ccagtcaccctgttggaccatggctcgtggcctgttccctgCCAGATCCAG--G-GGCCTCTGTCCTGGAAGCCACCTGGCTTGCTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53906724 246 +  58131712 -TCGTGGTA---------ATGA----CTGTTTTCAAGTCAGCCTTCGTCACCATGCTCGGAGCCA-CACTTAAAGA--ACCCCATGGCTCACAC----CCTCTT-CT-CAGTGTCACCCTT-----TATCCCAGA-----------AG------AAAAGTCTGTGTTCACCTCTTCTCTCCTC---C--------------------CCTTCATCCCAGGGCCCTGTGGC-CCAGTCACCCTTTTGGACCATGGCTCATGGCCTGTTCCCTGCCAGATCCAG--G-GGCCTCTGTCCTGGAAGCCATCTGGCTTGCTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       526860 246 -   3636681 -TCGTGGTA---------ATGA----CTGTTTTCAAGTCAGCCTTCGTCACCATGCTCGGAGCCA-CACTTAAAGA--ACCCCATGGCTCACAC----CCTCTT-CT-CAGTGTCACCCTT-----TATCCCAGA-----------AG------AAAAGTCTGTGTTCACCTCTTCTCTCCTC---C--------------------CCTCCATCCCAGGGCCCTGTGGC-CCAGTCACCCTGTTGGACCATGGCTCATGGCCTGTTCCCTGCCAGATCCAG--G-GGCCTCTGTCCTGGAAGCCACCTGGCTTGCTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       506446 246 -   4457520 -TCGTGGTA---------ATGA----GTGTTTTCGAGTCAGCCTTCGTCACCATGTTCGGAGCCA-CACTTAAAGA--ACCCCATGGCTCACAC----CCTCTT-CT-CAGTGTCATCCTT-----TATCCCAGA-----------AG------AGAAGTCTGTGTTCACCTCTTCTCTCCTC---C--------------------CCTCCATCCCAGGGCCCTGTGGC-CCCGTCACCCTGTTGGACCATGGCTCATGGCCTGTTCCCTGCCAGATCCAG--G-GGCCTCTGTCCTGGAAGCCACCTGGCTTGCTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154537106 240 - 158406734 -TCGAGGTA---------ATGA------G-TTTCAAGTCAGCCTTCATTGCCATGTTCCGAGCCA-CACTTTAAGA--ACCTCATGGCTCACAG----CCTCTT-CT-CAGTGTCACCCTT-----TATCCCTGA-----------AA------TAAAGTCTGTATT---GTCTTCCCTGCTC---C--------------------TTACCATCCCAGTGCCCTGTGGC-CCAGTCACCCAGTTAGAGCATGGCTCCCAGCTTGTTTCATGCCTGATCCAG--G-GGCCTCTGTCCTGGAAGCCACCTGGCCTGACT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             369545 230 -   2682657 -TCGGGGTA---------ATGA------GTTTTCAAGTCAGCCTTCATCGCCACGCTCTGAGCCA-CACTTTAAGA--AC------------------CCTCTT-CT-CAGTGTCACCCTT-----TATCCCTGA-----------AG------AGAAGTCTGTATTCTCCTCTTCCCTGCTC---C--------------------TCACCATCCCAGCGCCCTGTGGC-CCAGTCACCCTGTTAGAGCATGGCTTCTGGCTTGTTCCCTGCCTGATCCAG--G-GTCCTCTGTTCTGGAAGCCACCTGGCCTGACT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       395791 211 -   2086007 -ACGGAGTA---------ACGA------GTTTTCAGGTCAGCCTTCATTGCCAT--------------------GA--AC------------------CCTCTT-CT-CAGGGTCACCCTT-----TATCCCTGA-----------AG------AGAAGTCTGTCTTCTCCTCTTCCGTGCTC---C--------------------TCACCATCCCAGTGCCCTGTGGC-CCACTCACCCTGTTAGAGCATGGCTCCCGGCGTGTTCCCTGCCTGATCTAG--G-GGCCTCTGTCCTGGAAGCCACCTGGCCTGACT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       456669 243 +   3831555 -TCGGGGTA---------ATGA------GTTTTCAAGTCAGCCTTCATCGCCATGTTCCGAGCCA-CAC-TTAAGA--ACCTCATGGCTCACAC----CCTCTC-CT-CAGTATGACCCTT-----TATCCCTGA-----------AG------AGAAGTCTGTATTCTCCTCTTCCGTGCTC---C--------------------TCACCATCCCAGCGCCCTGTGGC-CCAGTCGCCCTGTTAGAGCATGGCTCCCGGCTTGTTCGCTGCCTGATCCAG--G-GGCCTCTGTCCTGGAAGCCACTTGGCCTGACT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             476887 270 +   3845361 ---GCAGTG---------GTGA----GTGTTTTTGGGCGAACCTTAG--ACAGTGTTTGGAGCCA-CACCTGCAGACCGCCCACTGGCCCGCCC----CCTCTTACT-CATCAGTTCCTCTGAGAGTATCTTCAA-----------AG------AGGAGTCTGTGCTGTGCTGTGTTCTCTTC---CTGCCCGTTAAGGGGAGGAAGCCTCCATCCCGTGGCTCTGTGAC-CCAGCCACCCT-TTGGATCTTTACTCATGGCCTCTTCATTGCCAGGAACAG--GAGGCTTTTGTATTAGGATCCGCCTTGCTTTGTG
i otoGar3.GL873689          C 0 I 2
s mm10.chr7                  56155292 175 + 145441459 --------------------GA----TACTTCTTAGGT----TTTTGTC------TTTGACCTTA-CATTTG--GA--ACCTCAGTGCTT--------CTGACT-GT-CAGTGTTTAATTT-----AATTTAAGC-----------AAACTTTTAGGATACTGCGTTCACTTTCTGTCTA---------------------------TCTCTGGCTTAGGACACCATGGG-T--GTCA------------------------------------------------GCCCTTTGTCTTTGGATTCTCTTGGCTTTGTT
i mm10.chr7                 C 0 I 3
s canFam3.chr3               60056110 248 -  91889043 --CATGGTG---------ATAA----GAGTGTATAATACAAAGAATGACACCATGGTGGGAGTGG-CTCCTGAAGA--ACCCCAGACTTCTCCCCATGCCTGTT-CTCCAGTGCTGGCATT-----TATTCTGAACAGGCTTTTG-AG------AGGAATCTGTGTTCTCTTTCCCTCTCTGTTAGC--------------------CCTCCAGC-CATGGCCCTTTAGC-----------------ATTCTGGCTCTTGGCCTCTTCTCTGCCAGACCCAGTAA-GGCCTGTATGTTTGAACCTGCCTTGCTTCATA
i canFam3.chr3              C 0 I 4
s dasNov3.JH562051             440095 256 +    563711 TTGGTGGTAGGAGTGTTTATGAAGGGTTGTATCTGAGCCAACCATGGATACCATGCTCAGAGTGATTACAGGCAAA--ACCC----------------CCTCTT-CT-CAGTGCTACTGCT-----TGTTCTGAGTAAGTTTTTTCAG------GGGAATCCATTTTCTCTTTCCCTCACCATTAAC--------------------CCTTTAGCCCTTGGCCCTCTTGCTCCAGTTACTTTGTTGAAGGAGATCTCTCAGC--------TGCCAGATCCAG--T-CATCCTTTTATTTGGATCCTCCCTGCTTGATT
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13528351 981 +  16154928 I
e nomLeu3.chr6               71034730 100 + 121039945 M
e panPan2.chr15              74127427 1060 -  99763055 M

a score=1992022.000000
s hg38.chr15_KI270851v1_alt    207703 230 +    263054 GTGACATTCAGGAT-G-GCTAAGACTGTGAC--TG----TAGCCTGGC-----TTG--GCTTTGC----CTTCCTTCGGGTCTAGAAGGC-------GGCTCTCCTGAGTTT---------------GTTTCCATGTTTCTAGG---------GAGCTCTTCTCTCTGCTCATTCT-TTATGTCCTGGAAGTCTGTGTGGCTTCACCCATAAC-TATGGCGTATTCTGCCCAGTCTT----CTTGA-------------------------------GTT-TTCTCCCCTCTTGCTCCCACAGACCTACGATTGCTGC
s panTro5.chr15               9594799 261 +  83230942 GTGACATTCAGGAT-G-GCTAAGACTGTGAC--TG----TAGCCTGGC-----TTG--GCTTTGC----CTTCCTTCGGGTCTAGAATGC-------GGCTCCCCTGAGTTT---------------CTTTCCATGTTTCTAGG---------GAGCTCTTCTCGCTGCTCGTTCT-TTATGTCCTGGAAGTCCGTGTGGCTTCACCCATAAC-TATGGCGTATTCTGCCCACTCTT----CTTGAGTTTTCTCCCCTCTTGCTCCCACAGACCTACGTT-TTCTCCCCTCTTGCTCCCACAGACCTACGATTGCTGC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       172469 261 -    281578 GTGACATTCAGGAT-G-GCTAAGACTGTGAC--TG----TAGCCTGGC-----TTG--GCTTTGC----CTTCCTTCGGGTCTAGAATGC-------GGCTCCCCTGAGTTT---------------CTTTCCATGTTTCTAGG---------GAGCTCTTCTCGCTGCTCGTTCT-TTATGTCCTGGAAGTCCGTGTGGCTTCACCCATAAC-TATGGTGTATTCTGCCCAGTCTT----CTTGAGTTTTCTCCCCTCTTGCTCCCACAGACCTACGTT-TTCTCCCCTCTTGCTCCCACAGACCTACGATTGCTGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71034830 253 + 121039945 GTGGCA-TCAGGGT-G-GCTGA------GAC--TG----TAGCCTTGC-----TTG--GCTTTGC----CTTCCTTTGGGTCTAGAATGT-------AGCTCT-CTGAGTTT---------------CTTTCCATGTTTCTAGG---------GAGCTCTTCTCTCTGCTCGTTCT-TTATGTCCTGGAAGTCCATGTGGCTTCACCCATAAC-TATGGCGTATTCTGCCCACTCTT----CTTGAGTTTTCTCCCCTCTTGCTCCCACAGACCTAC-GTTTTCTCCCCTCTTGCTCCCACAGACCTACGATTGCTGC
i nomLeu3.chr6              M 100 C 0
s rheMac8.chr7              164341846 224 - 169600520 GTGGCATTCAGAGT-G-GCTGA------GAC--TG----TAGCCTTGC-----TTG--GCTCTGC----CTTCCTTTGGGTCTAGAATGC-------AGCTCTCCCGAGTTT---------------CTTTCTGTGTTCCTAGG---------GAGTTCTTCTCTCTGCTTATTCT-TTATATCCTGGATGTTCTCATGGCTTCACCCATAAC-TGTGGCATATTCTGTCCACCCTT----CTTGA-------------------------------GTT-TTCTCCCCTCTTGCTCCCACAGACCTACGATTGCTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165662806 224 - 171882078 GTGGCATTCAGAGT-G-GCTGA------GAC--TG----TAGCCTTGC-----TTG--GCTCTGC----CTTCCTTTGGGTCTAGAATGC-------AGCTCTCCCGAGTTT---------------CTTTCTGTGTTCCTAGG---------GAGTTCTTCTCTCTGCTTGTTCT-TTATATCCTGGATGTTCTCATGGCTTCACCCATAAC-TGTGGCATATTCTGTCCACCCTT----CTTGA-------------------------------GTT-TTCTCCCCTCTTGCTCCCACAGACCTACGATTGCTGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       517909 224 +   2379783 GTGGCATTCAGAGT-G-GCTGA------GAC--TG----TAGCCTTGC-----TTG--GCTCTGC----CTGCCTTTGGGTCTAGAATGC-------AGCTCTCCCGAGTTT---------------CTTTCTGTGTTCCTAGG---------GAGTTCTTCTCTCTGCTTGTTCT-TTATATCCTGGACGTTCTCATGGCTTCACCCATAAC-TGTGGCATATTCTGCCCACCCTT----CTTGA-------------------------------GTT-TTCTCCCCTCTTGCTCCCACAGACCTACGATTGCTGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       474372 224 +   4116138 GTGGCATTCAGAGT-G-GCTGA------GAC--TG----TAGCCTTGC-----TTG--GCTCTGC----CTTCCTTTGGGTCTAGAATGC-------AGCTCTCCCGAGTTT---------------CTTTCTGTGTTCCTAGG---------GAGTTCTTCTCTCTGCTTGTTCT-TTATATCCTGGACTTTCTCGTGGCTTCACCCATAAC-TGTGGCATATTCTGCCCACCCTT----CTTGA-------------------------------GTT-TTCTCCCCTCTTGCTCCCACAGACCTACGATTGCTGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53906970 224 +  58131712 GTGGCATTCAGAGT-G-GCTGA------GAC--TG----TAGGCTTGC-----TTG--GCTCTGC----CTTCCTTTGGGTCTAGAATGC-------AGCTCTCCCGAGTTT---------------CTTTCTGTGTTCCTAGG---------GAGTTCTTCTCTCTGCTTGTTCT-TTATATCCTGGACGTTCTCGTGGCTTCACCCATAAC-TGTGGCATATTCTGCCCACCTTT----CTTGA-------------------------------GTT-TTCTCCCCTCTTGCTCCCACAGACCTACGATTGCTGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       527106 224 -   3636681 GTGGCATTCAGAGT-G-GCTGA------GAC--TG----TAGCCTTGC-----TTG--GCTCTGC----CTTCCTTTGGGTCTAGAATGC-------AGCTCTCCCGAGTTT---------------CTTTCTGTGTTCCTAGG---------GAGTTCTTCTCTCTGCTTGTTCT-TTATATCCTGGACGTTCTCGTGGCTTCACCCATAAC-TGTGGCATGTTCTGCCCACCCTT----CTTGA-------------------------------GTT-TTCTCCCCTCTTGCTCCCACAGACCTACGATTGCTGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       506692 223 -   4457520 GTGGCATTCAGAGT-G-GCTGA------GAC--TG----TAGCCTTGC-----TTG--GCTCTGC----CTTCCTTTGGGTCTAGAATGC-------AGCTCTCCTGAGTTT---------------CTTTCTGTGTTCCTAGG---------GAGCTCTTCTCTCTGCTCGTTCT-TTATATCCTGGAAGTTCTCGTGGCTTCACCCATAAC-TGTGGCGTATTCTGCCCACCCTT----CTTGA-------------------------------G-T-TTCTCCCCTCTTGCTCCCACAGACCTATGATTGCTGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154537346 221 - 158406734 CTAACCTTCAGGGT-G-GCTGA------GAC--TG----TAACCCTGC-----CTC--GCTCTGC----GTTCCTTTGGG-CTAAAATGG-------AGCTCTCCTGAGTTT---------------CTTTCGGTGTTCCTAGG---------GAGG---TCTCTCTGCTTATTCT-TCGTGTCCTGGAAATCCTCGTGGCTTCACCCATTACTTACGTCTTATTCTGCCCACTCTT----CTTGA-------------------------------GTT-TTCTCCCCTCTTGCTCCCACAGACCTATGATTGCTGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             369775 227 -   2682657 GTGACCTTCAGGGT-G-GCTGA------GACTATA----TAACCCTGC-----TTA--GCTCTGC----CTTCCTTTGGGTCTAAAATGG-------AGCTCTCCTGAGTTT---------------CTTTCAGTGTTCCTAGG---------GAGGTCTTCTCTCTGCTTGTTCT-TCCTGTCCTGGAAATCCTCGTGGCTTCCCCCGTAACTTATGTCTTACTCTGCCCACCCTT----CTTGA-------------------------------GTT-TTCTCCTCTCTTGCTCCTGCAGACCTATGATTGCTGC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       396002 225 -   2086007 GTGACCTTCACGGT-G-GCTGA------GAC--TG----TAACCCTGC-----TTA--GCTCTGC----CTGCCTTTGGGTCTAAAATGG-------AGCTCTCCTGAGTTT---------------CTTTCACTGTTCCTAGG---------GAGGTCTTCTCTCTGCTTGTTCT-TCCTGTTCTGGAAATCCTCGTGGCTTCACCCATAACTTATGTCTTATTCTGCCCACTCTT----CTTGA-------------------------------GTT-TTCTCCCCTCTTGCTCCCACAGACCTATGATTGCTGC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       456912 223 +   3831555 GTGACCTTCAGGGT-G-GCTGA------GAC--TG----TAACCCTGC-----TTA--GCTCTGC----CTTCCTTTGGGTCTAAAATGG-------AGCTCTCCTGAGTTT---------------CTTTTGGTGTTCCTAGG---------GAGGTCTTCTCTCTGCTTGTTCT-TCATGTCTTGGAAATCCTCGTGGCTTCACCCATAAC--ATGTCTTATTCTGCCCTCTTTT----CTTGA-------------------------------GTT-TTCTCCCCTCTTGCTCCCACAGACCTATGATTGCTGC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             477159 231 +   3845361 GTGATGTGCAAGGTGG-GCTAA------ACT--TG----CAGCC--AC-----TTA---CACTGAAACGTTTCCTCTGCATCTAGAATACTCTGGTGATTTTCCTTGCGTAT---------------CTTTTCATGCTCTTAGA---------GAGTTCTCTT--CTGCCTATTCCAACAAGGAATAGGAATCCTTGCTGTTTCACCTGTAACTTCTGGCTCACTCTGGCCACTCTT----TTTGA-------------------------------GTT-TTCTCACTTATTTCCTGCCCATATCTGC--TTGCTGC
i otoGar3.GL873689          I 2 C 0
s mm10.chr7                  56155470 209 + 145441459 -----GTGCATGGT-G------------GAT--AG--------CTTGC-----TTAAAGCTTT-C----TTCCCTTTGGGTCTAGAATAC-------TACCTTTATGACTTT--------------CCTTTTCCTGCCCCTTGGCTAATCTCTGAGATTGTTTCTTTGCTTGCTTT-TTATACCATTGAAATAGTTGTGGTTTCACTCATAACCCCCACCTCATTCTGTCTGCTCT------TTGA-------------------------------TCA-TACTCCCC-----------CATATTTGTTATTGTTGC
i mm10.chr7                 I 3 C 0
s canFam3.chr3               60056362 231 -  91889043 TCGACATTG------G-GCTAA------GAC--CAAGGTCACCTCTGC-----TGAAAGCCTT-C----CTTCCTTTG-GTCTGGAATAC-------TGCTCCCTTAATTTTCC---TTACACTGCCCCTTGCATGTTCTTTGA---------GAG---TTCTCCCTGATTATTCT-TTGCACATTGGAAATTCTTATGATTTTCTCCATAACTTCAGGTTCATTGTGCTCACTCTT----ACTGA-------------------------------G-T-TTCTCATCTATCTCTCCC-TATTCCTGTGATTGCTGC
i canFam3.chr3              I 4 C 0
s dasNov3.JH562051             440351 237 +    563711 --CTTCTTCGTTGT-GAACTAA------GAC--TG----TGGCCACTCAATTTTAA--GCTTTTC----CTTCCTTTGGGTCTAGAACAG-------TGCTGTGTTGATTTTCCTCTTTGTTACTCTCCTTGCGTGCTCTTTGA---------AGGTTCTTCTCTCTGGCTGTTAT-TTACACTTTGGGAATCCTTATGGTTGCATCAGTAACTTTTGGCTCATTTTGTCGACTCTCTTGACTTGA-------------------------------GTC-ATCCCACC-----------AATACCTATGGTTTGTGC
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13528351 981 +  16154928 I
e panPan2.chr15              74127427 1060 -  99763055 M

a score=3284115.000000
s hg38.chr15_KI270851v1_alt    207933 348 +    263054 TTCAGCATTTATGAT-GTAAGCACTTTCAACTCTGGATCTCCCATTCACA--TCTCTGGT-TGGAGGTGCA-G------------------------------------TGCATGCAAATCACCACATGTCCGAAATTCAGCTGGCTGGCATTCTCTAGTAGCTG-------------CCG-----TTTCCCATCGTGGTGAATAAAACTGTCTGCCAGTT-AGTTGAGC--------------------------CAG-TGTCCGAGCGGCA-CCTGC--------------------------GG--CCCTCC-----------------------TTCCT-TCC-----CAC---CCCA-----------TGCT---------------------------------------CTCT-G-----TG--------------------------------------------------CTGC---------------------------------------T----------------------TCTGCGG-----------------------------------------------------------CCTCTGCTATC------------------AGATAAG---------------------CCTT--GGGCATTGCTGCGATCTTCATCAGTTAA-AGA--GCT------------------------------A--------GTGGGGCTGAC-AGATTCTCTCAGAGGAGTCTTAG-AAGAAGA---------------------GTGG-----AA----------------------GCGGCTG----
s panTro5.chr15               9595060 341 +  83230942 TTCAGCATATATGAT-GTAAGCACTTTCAACTCTGGATCTCCCATTCACA--TCTCTGGT-TGGAGGAGCA-G------------------------------------TGCATGCAAAT---GACATGTCCGAAATTCAGCTGGCT----TTCTCTAGTAGCTG-------------CCA-----TTTCCCATCGTGGTGAATAAACCTGTCTGCCAGTT-AGTTGAGC--------------------------CAG-TACCCGAGCGGCA-CCTGC--------------------------GG--CCCTCC-----------------------TTCCT-TCC-----CAC---CCCA-----------TGCT---------------------------------------CTCT-G-----TG--------------------------------------------------CTGC---------------------------------------T----------------------TCTGTGG-----------------------------------------------------------CCTCTGCTATC------------------AGATAAG---------------------CCTT--GGGCATTGCTGCCATCTTCATCAGTTAA-AGA--GCT------------------------------A--------GTGGGGCTGAC-AGATTCTCTCAGAGGAGTCTTAG-AAGAAGA---------------------GTGA-----AA----------------------GCGGCTG----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74128487 343 -  99763055 TTCAGCATTTATGAT-GTAAGCACTTTCAACTCTGGATCTCCCATTCACA--TCTCTGGT-TGGAGGTGCA-G------------------------------------TGCATGCAAAT---GACATGTCCGAAATTCAGCTGGCT----TTCTCTAGTAGCTG-------------CCA-----TTTCCCATCGTGGTGAATAAACCTGTCTGCCAGTT-AGTTGAGC--------------------------CAG-TACCCGAGCGGCACCCTGC--------------------------GGGCCCCTCC-----------------------TTCCT-T-C-----CAC---CCCA-----------TGCT---------------------------------------CTCT-G-----TG--------------------------------------------------CTGC---------------------------------------T----------------------TCTGTGG-----------------------------------------------------------CCTCTGCTATC------------------AGATAAG---------------------CCTT--GGGCATTGCTGCCATCTTCATCAGTTAA-AGA--GCT------------------------------A--------GTGGGGCTGAC-AGATTCTCTCAGAGGAGTCTTAG-AAGAAGG---------------------GTGA-----AA----------------------GCGGCTG----
i panPan2.chr15             M 1060 C 0
s gorGor5.CYUI01000141v1       172730 344 -    281578 TTCAGCATATATGAT-GTAAGCACTTTCAACTCTGGATCTCCCATTCACA--TCTCTGGT-TGGAGGTGCA-G------------------------------------TGCATGCAAATCACCACATGTCCGAAATTCAGCTGGCT----TTCTCTAGTAGCTG-------------CCG-----TTTCCCATCGTGGTGAATAAACCTGTCTGCCAGTT-AGTCAAGC--------------------------CAG-TGCCCGAGCAGCA-CCTGC--------------------------GG--CCCTCC-----------------------TTCCT-TCC-----CAC---CCCA-----------TGCT---------------------------------------CTCT-G-----TG--------------------------------------------------CTGC---------------------------------------T----------------------TCTGCGG-----------------------------------------------------------CCTCTGCTATC------------------AGATAAG---------------------CCTT--GGGCATTGCTGCCATCTTCATCAGTTAA-AGA--GCT------------------------------A--------GTGGGACTGAC-AGATTCTCTCAGAGGAGTCTTAG-AAGAAGA---------------------GTGA-----AA----------------------GCGGCTG----
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71035083 344 + 121039945 TTCAGCATTTATGAT-GTAAGCACTTTCAACTCTGGATCTCCCATTCACA--TCTCTGGT-TGGAGGTGCA-G------------------------------------TGCATGCAAATCACAACATGTCCAAAATTCAGCTGGCT----TTCTCTAGTAGCTG-------------CCG-----TTTCCCATCGTGGTGAATACACCTGTCTGCCAGTT-AGTGGAGC--------------------------CAG-TGCCTGTGTGGCA-CCTGC--------------------------GG--CCCTCC-----------------------TTCCT-CCC-----CAC---CCCA-----------TGCT---------------------------------------CTCT-G-----TG--------------------------------------------------CTGC---------------------------------------T----------------------TCTGTGG-----------------------------------------------------------CCTCTGCTATC------------------AGATAAA---------------------CCTT--GGGCATTGCTGCAGTCTTCATCAGTTAA-AGA--GCT------------------------------A--------GTGGGGCCGAC-AGACTCTCTCAGAGGAGTCTTAG-AAGAAGA---------------------GTGA-----AA----------------------GCGGCTG----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164342070 345 - 169600520 TTTAGCATTTATGAT-GTAAGCACTTTCAACTCTGGATCTCCCATTCACA--TCTCTGCT-TGGAGGTGCA-G------------------------------------TGCATGTAAATCGCAGCACGTCCAAAATTCAGCTGACC----TTCTCTAGTAGCTG-------------CCA-----TTTCCCATTGTGGTGAATAAACCTGTCTGCCAGTTAAGTCGAGC--------------------------CAG-TGCCCGAGTGGCA-CCTGT--------------------------GG--CCCTGT-----------------------TTCCT-TCC-----CAC---CCCA-----------TGCT---------------------------------------CTCC-G-----TG--------------------------------------------------CTGC---------------------------------------T----------------------TCTGTGG-----------------------------------------------------------CGTCTGCTATC------------------AGATAAG---------------------CCTT--GGGCATTGCTGCGATCTTCATCAGTTAA-AGA--GCT------------------------------A--------GTAGAGCCGAC-AGATTCTCTCAGAGGAGTCTTAG-AAGAAGA---------------------GTGA-----AA----------------------GCAGCTG----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165663030 345 - 171882078 TTTAGCATTTATGAT-GTAAGCACTTTCAACTCTGGATCTCCCATTCACA--TCTCTGCT-TGGAGGTGCA-G------------------------------------TGCATGTAAATCGCAGCACGTCCGAAATTCAGCTGACC----TTCTCTAGTAGCTG-------------CCA-----TTTCCCATTGTGGTGAATAAACCTGTCTGCCAGTTAAGTCGAGC--------------------------CAG-TGCCCGAGTGGCA-CCTGT--------------------------GG--CCCTGT-----------------------TTCCT-TCC-----CAC---CCCA-----------TGCT---------------------------------------CTCC-G-----TG--------------------------------------------------CTGC---------------------------------------T----------------------TCTGTGG-----------------------------------------------------------CGTCTGCTATC------------------AGATAAG---------------------CCTT--GGGCATTGCTGCGATCTTCATCAGTTAA-AGA--GCT------------------------------A--------GTAGAGCCGAC-AGATTCTCTCAGAGGAGTCTTAG-AAGAAGA---------------------GTGA-----AA----------------------GCAGCTG----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       518133 345 +   2379783 TTTAGCATTTATGAT-GTAAGCACTTTCAACTCTGGATCTCCCATTCACA--TCTCTGCT-TGGAGGTGCA-G------------------------------------TGCATGTAAATCGCAGCACGTCCGAAATTCAGCTGACC----CTCTCTAGTAGCTG-------------CCA-----TTTCCCATTGTGGTGAATAAACCTGTCTGCCAGTTAAGTCGAGC--------------------------CAG-TGCCCGAGTGGCA-CCTGT--------------------------GG--CCCTGT-----------------------TTCCT-TCC-----CAC---CCCA-----------TGCT---------------------------------------GTCC-G-----TG--------------------------------------------------CTGC---------------------------------------T----------------------TCTGTGG-----------------------------------------------------------CGTCTGCTATC------------------AGATAAG---------------------CCTT--GGGCATTGCTGCCATCTTCATCAGTTAA-AGA--GCT------------------------------A--------GTAGAGCCGAC-AGATTCTCTCAGAGGAGTCTTAG-AAGAAGA---------------------GTGA-----AA----------------------GCAGCTG----
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       474596 345 +   4116138 TTTAGCATTTATGAT-GTAAGCACTTTCAACTCTGGATCTCCCATTCACA--TCTCTGCT-TGGAGATGCA-G------------------------------------TGCATGTAAATCGCAGCACGTCCGAAATTCAGCTGACC----TTCTCTAGTAGCTG-------------CCA-----TTTCCCATCGTGGTGAATAAACCTGTCTGCCAGTTAAGTCGAGC--------------------------CAG-TGCCCGAGTGGCA-CCTGT--------------------------GG--CCCTGT-----------------------TTCCT-TCC-----CAC---CCCA-----------TGCT---------------------------------------CTCT-G-----TG--------------------------------------------------CTGC---------------------------------------T----------------------TCTGTGG-----------------------------------------------------------CGTCTGCTATC------------------AGATAAG---------------------CCTT--GGGCATTGCTGCGATCTTCATCAGTTAA-AGA--GCT------------------------------G--------GTAGAGCCGAC-AGATTCTCTCAGAGGAGTCTTAG-AAGAAGA---------------------GTGA-----AA----------------------GCGGCTG----
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53907194 344 +  58131712 TTTAGCATTTATGAT-GTAAGCACTTTCAACTCTGGATCTCCCATTCACA--TCTCTGCT-TGGAGGTGCA-G------------------------------------TGCATGTAAAAAGCAGCATGTCCGAAATTCAGCTGACC----TTCTCTAGTAGCTG-------------CCA-----TTTCCCATCGTGGTGAATAAACCTGTCTGCCAGTTAAGTCGAGC--------------------------CAG-TGCCCGAGTGGCA-CCTGT--------------------------GG--CCCTCT-----------------------TTCCT-TCC-----CAC---CCCA-----------TGCT---------------------------------------CTCT-G-----TG--------------------------------------------------CTGC---------------------------------------T----------------------TCTGTGG-----------------------------------------------------------CGTCTGCTATC------------------AGATAAG---------------------CCTT--GGGCATTGCTGCAATCTTCATCAGTTAA-AGA--GCT------------------------------A--------GTAGAGCCGAC-AGATTCTCTCAGAGGAGTCTTAG-AAGAAGA---------------------GTGA-----AA----------------------GC-GCTG----
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       527330 345 -   3636681 TTTAGCATTTATGAT-GTAAGCACTTTCAACTCTGGATCTCCCATTCACA--TCTCTGCT-TGGAGGTGCA-G------------------------------------TGCATGTAAATCGCAGCACGTCCGAAATTCAGCTGACC----TTCTCTAGTAGCTG-------------CCA-----TTTCCCATTGTGGTGAATAAACCTGTCTGCCAGTTAAGTCGAGC--------------------------CAG-TGCCCGAGTGGCA-CCTGT--------------------------GG--CCCTGT-----------------------TTCCT-TCC-----CAC---CCCA-----------TGCT---------------------------------------CTCT-G-----TG--------------------------------------------------CTGC---------------------------------------T----------------------TCTGTGG-----------------------------------------------------------CGTCTGCTATC------------------AGATAAG---------------------CCTT--GGGCATTGCTGCGATCTTCGTCAGTTAA-AGA--GCT------------------------------A--------GTAGAGCCGAC-AGATTCTCTCAGAGGAGTCTTAG-AAGAAGA---------------------GTGA-----AA----------------------GCGGCTG----
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       506915 344 -   4457520 TTTAGCATTTATGAT-GTAAGCACTTTCAACTCTGGATCTCCCATTCACA--TCTCTGCT-TGGAGGTGCA-G------------------------------------TGCATGTAAATCACGGCATGTCCGAAATTCAGCTGACC----TTCTCTAGTAGCTG-------------CCA-----TTTGCCATCGTGCTGAATAAACCTGTCTGCCAGTT-AGTCGGGC--------------------------CAG-TGCCCGAGCGGCG-CCTGC--------------------------GG--CCCTCC-----------------------TTCCT-TCC-----CAC---CTCA-----------TGCT---------------------------------------CTCT-A-----TG--------------------------------------------------CTGC---------------------------------------T----------------------TCTGTGG-----------------------------------------------------------CGTCTGCTATC------------------AGATAAG---------------------CCTT--GGGCATTGCTGCGATCTTCATCAGTTAA-AGA--GCT------------------------------A--------GTAGAGCCGAC-AGATTCTCTCAGAGGAGTCTTAG-AAGAAGA---------------------GTGA-----AA----------------------GCAGCTG----
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154537567 340 - 158406734 TTCGGCATTTATGAT-GTAAGCACCTTCAACTCTGGATCTCCCATTCATG--CCTCTGCT-TGGAGGTGCA-G------------------------------------TGCATGTAAATCACAGCGTTTCTGAAATTTAGCTGGCT----TTCTCTGGTAGCTG-------------CCG-----CTTCCCATCGTGGTGAATAAACCTGTCTGCCAGTT-AGTCAAGC--------------------------CAG-TGCCCTAGCAGCA-CCTGC--------------------------AG--CCCTCC-----------------------TTTCC-TCC-----AAC---CCCG-----------TGCT---------------------------------------CTCT-C-----TG--------------------------------------------------CTC----------------------------------------------------------------CTGTGG-----------------------------------------------------------CCTCTGCCATC------------------GGATAAG---------------------ACTT--GGGCATTGCTGCTATCTTCCTCAGTTAA-AAATCTCT------------------------------A--------GTGTAGCTAAC-AGATTCTCTGAGAGTACTCTT----AGAAGT---------------------GTGA-----AG----------------------GTGGCTG----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             370002 331 -   2682657 TTCAGCATTTATGAC-GTAAACACCTTCCACTCTGGATCTCCCATTCATGTCTCTCTGCC-TGGAGGTGCA-A------------------------------------TGCATGTAAATCACAGCCTTTCTGACATTTAGCTGGCT----TTCTCTGGTAGCTG-------------CCG-----CTTCCCATCGTGGTGAATAAACCTGTCTGCCAGTT-AGTCAAGC-----------------------------------------CA-CCTGC--------------------------GG--CCCTCT-----------------------TTCCC-TGC-----AA----CCCG-----------TGCT---------------------------------------CTCT-G-----TG--------------------------------------------------CTCC---------------------------------------T----------------------TCTGTGG-----------------------------------------------------------CCGCTGCCATT------------------GGATGAG---------------------ACTT--GGGCATCACTGCTATCTTCCTTAGTTAA-AAA--GCT------------------------------A--------GTGTAGCTGAC-AGATTGTCTGAGAGTACTCTTAG-AAGAAGA---------------------GTGA-----AG----------------------GTGACTG----
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       396227 342 -   2086007 TTCAGCATTTTTGAT-GTAAACACCTTCAACTCTGGACCTCCCATTCATG--TGTCTGCT-TGAAGGTGCA-G------------------------------------TGCCTGTAAATCACCACCTTTCTAAAATTCAGCTGGCT----TTCTCTGCTAGCTG-------------CCG-----CTT-ACATCATGGTGAATAAACCTGTCTGCCAGTT-AATCGAGC--------------------------CAG-TGCCCTGGCAGCA-CCTGC--------------------------GG--CCCTCC-----------------------TTCCC-TGC-----AGC---CCCA-----------TGCT---------------------------------------CTCT-G-----TG--------------------------------------------------CTGC---------------------------------------T----------------------TCTGTGG-----------------------------------------------------------CCTCTGCcatt------------------ggataag---------------------actc--gggcattgctgctatcttccttagttaa-aaa--gct------------------------------g--------gtgtagctgac-ggattctctgagagt-ctcttag-atgaaga---------------------gcga-----ag----------------------gtggctg----
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       457135 334 +   3831555 TTCAGCATTTATGAT-GTAAGCACCTTCAACTCTGGATCTCCCATTCATG--TCTCTGCT-TGGAGGTGCA-G------------------------------------TGCATGTAAATCACAGCATTTCTGAAATTCAGCTGGCT----TTCTCTGGTAGCTG-------------CCG-----CTTCCCGTCGTGGTGAATAAACCT--------GTT-AGTCAAGC--------------------------CAG-TGCCCTAGCAGCA-CCTGC--------------------------AG--CCCTCC-----------------------TTCCC-TCC-----AAC---CCCA-----------TGCT---------------------------------------GTCT-G-----TG--------------------------------------------------CTCC---------------------------------------T----------------------TCTGAGG-----------------------------------------------------------CCTCTGCCATC------------------GGATAAG---------------------ACTC--GGGCATCGCTGCTATGTTCCTCAGTTAA-AAA--GCT------------------------------A--------GTGTAGCTGAC-AGAT--TCTGAGAGTACTCTTAG-AAAAAGT---------------------GTGA-----AG----------------------GTGGCTG----
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             477390 465 +   3845361 TCCAGCACGGATGATGGTAACCACCTTCAACTCTGAGTCTCCAGTTCACA--CCTCTGCT-TGGAGGTCCA-G------------------------------------TGTGTGTACATCACAGCATGTCCAAAACTCAGCCAGCC----TTCCTCAGTAGCCA-------------CTG-----TGTCCTGTGGTGGTGAAGAATACTGTCTGCGAGTT-GGTCAAGCT-------------------------CAG-TGTCCAGGAGGCA-CCTGTTCTGATCTTCCACCTTGTCCCCCATGTG--CTCTCC-----------------------TGGCC-TCCAGCCACAC---CCTG-----------TGTTTCAATGCTGCTACCAGGACTGTGGTTCAGGCCCATGGGGCTCT-GCTGGCTG--------------------------------------------------TTCC---------------------------------------T----------------------CCTTTGG-----------------------------------------------------------CCTGTGTCATCTCTGCACATCGCTGGATTAGATAGG---------------------ACTCTAGGGTGTGGCTGGGAGCTCCTTCAGTTAA-AGA--ACT------------------------------A--------GTGTATTTGACAAAATTTGCTCCGAGGAGCCTTGC-AAGAAAAGGTGATAGTATCTTGCTT---GTGACCTTTAT----------------------GTGGCTG----
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56155679 428 + 145441459 TCCAGCTTTTAGGATGGTAAACACCTTTAATTCTG------CAGTTCACA--ACTCTGAA-TGGCAGGCTC-G------------------------------------TGGATATAAACAACTGTTTGTCTCAAATTCAGTCTACT----TTCTT--GCAGCTG-------------CCACCATTTTTTTCATCATGGTGAACAAAC--AACTGCCAGATGGGCCAAATTTAGGTGTTTTCATTCTCTCAACCTACAC-TTACTGTGCTGCC-TCCTG--------------------------GG--CCTCCTGCATATCCTGCTGGGGAAAGCTATTCCT-CCC-----CTG---CACA-----------GACC---------------------------------------ATCTCG-----GG--------------------------------------------------TGGC---------------------------------------T----------------------TCCTTGG-------------------------------------------------------------TCTGCTGTC------------------AGACACG-----------------------TG--TGGCATGGCTTC-ACATCACTGGACCAG-AGA--GCTCATTCTAGGGAAATGGCTCCAGTTATACTAG--------ATGCATTTGAG-AGAATCCCTCATAGGATTATTGT-AAGAAAA---------------------TAAG-----AAAATGTTTTACT----------GGTGTCTG----
i mm10.chr7                 C 0 I 4
s canFam3.chr3               60056593 509 -  91889043 CGCAGTATGTATGATAGCAATCACCTTTAACTCTAGATATCCAGTTCACA--TATCTGAC-TGGAGGGCTACA------------------------------------TGCATGTACATTGTAGCATGTTCAGAATTCCACTAACC----TTGTCCCTTAGTTC-------------CCA-----TTCCCCATCACAGTGAATAAACTTGTCTGTCAGGC-AGTTAGGC--------------------------TGGATGCCTGAAAGCCA-CCTAT--------------------------CC--TCCTCT-----------------------ATCCTCTTC-----CAT---CTTACATTGCTATACTGCC---------------------------------------TTCT-G-----TGGCCTCCAACAAACATGTCCTGCCTTGGAACACTGTTATACAACTGTAGTCCTGC---------------------------------------TGTGCTTGTAGTCTGCGTACACCTTTGTGGCAGCTATCTTAGTTTCCTCCTCAATTGGC--------------TGTCAGGCA-------CCTCTGCAGTC----------ATTTTTTTAGATAAG--------------------GCCTC--AGGGAGTGCTATGATCTTGTTGAGTTAG-AGA--ACC------------------------------ATATGTTGTGAGTGTCCAACAAAATTGTCTTGGAGAAGTTCTGGCAAGAAAATGTGGAACTATTTTGTTTGAAATGT-----AG----------------------GTATCTG----
i canFam3.chr3              C 0 I 4
s dasNov3.JH562051             440588 535 +    563711 TACAGCTTTTATGATGATGACCACCGTCCAGTATGCATTTGTAGTTTGCA--TCTCTCCTCTTGAGCTCCA-GACCCACCCGTCTCCTGAATACTTCTGAAATCCCGTTTGCATATAAATCACAGCTTGGCCACAATTTGGATAATC----TTCTCCATCAGATGGCTGACTCTTGCCCCA-----TTCCCCATCCTGGTGAATGACTCTGTC----------------C--------------------------ATG-AGCCCAAGCATCA-CC--C--------------------------TG--TCCTCT-----------------------TCCCA-TCT-----CACCCACCCA-----------CACTC--------------------------------------CTCA-G-----GG--------------------------------------------------CTGCCTTCCACAGCTCTAGCCCACTCTTATTTGGAACACTGCTT----------------------CCTCTGG-------TTTGGTTCAGGCCTGACTTGCCATTTTCCTAGATTATGGTAGAGACTTCCTTAGTCTGCTCTC-----------CAGTCATAAATGGGCATCATTTGATTGTCTAAGACCCTA--GGACTTTGCCATGATTTTGATAAATTAAGAGA--ACT------------------------------ATATGTTGTGAGTATCTGCA-GAATTTTCATTGAGAATTCTTGA-AGAAAAG---------------------GTGA-----AA-TTATTTTGTTTGGGACCCTAGATATCTGGTTG
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13528351 981 +  16154928 I

a score=745081.000000
s hg38.chr15_KI270851v1_alt    208281 70 +    263054 AAACTTCAGCAACTTGGGGAACATTTGATCATATTAA----TAGTAGCTAACATGGTTCTAACCGTGTTAAACC
s panTro5.chr15               9595401 70 +  83230942 AAACTTCAGCAACTTGGGGAACATTTGATCATATTAA----TAGTGGCTAACATGGTTCTAACCGTGTTAAACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74128830 70 -  99763055 AAACTTCAGCAACTTGGGGAACGTTTGATCATATTAA----TAGTGGCTAACATGGTTCTAACCGTGTTAAACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       173074 70 -    281578 AAACTTCAGCAACTTGGGGAACATTTGATCATATTAA----TAGTAGCTAACATGGTTCTAACCGTGTTAAACC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71035427 70 + 121039945 AAACTTCAGCAACTTGGGGAACATTTGATCATATTAA----TAGTAGCTAACATGATTCTAACCGTGTTAAACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164342415 65 - 169600520 AAACTTCAGCAACTTGGGGAACATTTGCTCATATTAA----TAGTAGCTAACATGGTGCT----GTG-TATAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165663375 65 - 171882078 AAACTTCAGCAACTTGGGGAACATTTGCTCATATTAA----TAGTAGCTAACATGGTGCT----GTG-TATAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       518478 65 +   2379783 AAACTTCAGCAACTTGGGGAACATTTGCTCATATTAA----TAGTAGCTAACATGGTGCT----GTG-TATAAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       474941 65 +   4116138 AAACTTCAGCAACTTGGGGAACATTTGCTCATATTAA----TAGTAGCTAACATGGTGCT----GTG-TATAAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53907538 65 +  58131712 AAACTTCAGCAACTTGGGGAACATTTGCTCATATTAA----TAGTAGCTAACATGGTGCT----GTG-TATAAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       527675 65 -   3636681 AAACTTCAGCAACTTGGGGAACATTTGCTCATATTAA----TAGTAGCTAACATGGTGCT----GTG-TATAAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       507259 65 -   4457520 AAACTTCAGCAACTTGGGGAACATTTGCTCATATTAA----TAGTAGCTAACACGGTGCT----GTG-TATAAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154537907 69 - 158406734 AACCTTCAGCAACTTGGGGAACATTTGATCATGTTAA----TAATAGCTAACCCAGTCGTGACTCTG-TTAAAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             370333 69 -   2682657 AAACTTCAGCAGCTTGGGGAACATTTGATCATGTTCG----TAATCGCTAACACAGTTCTAACTGTG-GTAAAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       396569 68 -   2086007 aaactt-agcaacttggggaacatttgatcgtgttaa----taatagctaacacggttctaactgtg-ttaaag
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       457469 69 +   3831555 AAACTTTAGCAACTTGGGGAACATTTGATCATGTTAA----TAATAGCTAACACAGTTCTAACTGTG-TTAAAG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13529332 70 +  16154928 AAATTTCAGCAATTTGGGAAACAGTTGATTATACTAA----TAATATCTGATATGGTTCTAACCATGGTAAACC
i proCoq1.NW_012148396v1    I 981 I 237
s otoGar3.GL873689             477855 70 +   3845361 AAATTCTAGTAATTTGGGAAACAGTTGATTATATTAA----GAACAGCTAATGTGGTTCTAACCATGGTAAACc
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56156111 60 + 145441459 GAGTTTCAGAAATTTGGGAAATATTTAATGATGACAC----TGTATGTTTATGTGGTTC-----GCG-TT----
i mm10.chr7                 I 4 C 0
s canFam3.chr3               60057106 59 -  91889043 AAATTTCAGTAATGTGGGAAACATTTGATTATGCTAA----TAC---CTAACAGATCTGT--------TAAACC
i canFam3.chr3              I 4 C 0
s dasNov3.JH562051             441123 74 +    563711 AAATTTCTGTAAGTTGGGAAACATTTGATCATAGTAAATACAGGTAGCTAACACGGTCCTACCCATGCTAAACC
i dasNov3.JH562051          C 0 C 0

a score=1498156.000000
s hg38.chr15_KI270851v1_alt    208351 228 +    263054 CATTGAATC----CTGCGTCCTATCAAGTTAGG-TGCCTGG--AGAGCAGGGA---A---GGAAGA----CCC--AGGAGG--CAGAAGATGCTTACCCAGAAGCACCGAGT-GTAACTCTGGGAAAGGCAAGCCCTTCGTCACGGACAGTGTGTG----CGGTCGGCAGATTCCTGAAGGGCAGAGCGTTACTCGT------------------CGCCATGTGGCGGA--GG---------CTTGCT------------GCTGGCGA------GGAGGGAGTCTGAGCAGGGCACGCCCT
s panTro5.chr15               9595471 228 +  83230942 CATTGAATC----CTGCGTCCTATCAAGTTAGG-TGCCTGG--AGAGCAGGGA---A---GGAAGA----CCC--AGGAGG--CAGAAGATGCTTACCCAGAAGCACCGAGT-GTAACTCTGGGAAAGGCGAGCCCTTCATCACGGACAGTGTGTG----CGGTCGGCAGATTCCTGAAGGGCAGAGCGTTACTCGT------------------CGCCATGTGGCGGA--GG---------CTTGCT------------GCTGGCGA------GGAGGGAGTCTGAGCAGGGCACGCCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74128900 228 -  99763055 CATTGAATC----CTGCGTCCTATCAAGTTAGG-TGCCTGG--AGAGCAGGGA---A---GGAAGA----CCC--AGGAGG--CAGAAGATGCTTACCCAGAAGCACCGAGT-GTAACTCTGGGAAAGGCGAGCCCTTCATCACGGACAGTGTGTG----CGGTCGGCAGATTCCTGAAGGGCAGAGCGTTACTCGT------------------CACCATGTGGCGGA--GG---------CTTGCT------------GCTGGCGA------GGAGGGAGTCTGAGCAGGGCACGCCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       173144 228 -    281578 CATTGAATC----CTGCGTCCTATCAAGTTAGG-TGCCTGG--AGAGCAGGGA---A---GGAAGA----CCC--AGGAGG--CAGAAGATGCTTACCCAGAAGCACCGAGT-GTAACTCTGGGAAAGGCGAGCCCTTCGTCACGGACAGTGTGTG----CGGTGGGCAGATTCCTGAAGGGCAGAGCGTTACTCGT------------------CGCCATGTGGCGGA--GG---------CTTGCT------------GCTGGCGA------GGAGGGAGTCTGAGCAGGGCACGCCCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71035497 228 + 121039945 CATTGAATC----CTGCATCCTATCAAATTAGG-TGCCTGG--ACAGCAGGGA---A---GGAAGA----CCC--AGGAGG--CAGAAGGTGCTTACCCAGAAGCACCGAGT-GTAACACTGGGAAGGGCGAGCCCTTTGTCACGGACAGTGTGTG----CGGTCGGCAGATTCCTGAAGGGCAGAGCGTTACTCAT------------------TGCCATGTGGCACA--GG---------CTTGCT------------GCTGGCGA------GGAGGGAGTCTGAGCAGGGCATGCCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164342480 217 - 169600520 CATTGAATC----CTGCGTCCCATCAAGTTAGG-TGCCTGG--AGAGCAGGGA---A---GGAAGA----CCC--AGGAAG--CAGAAGGTGCTTACCCAGAAGCGCCGAGT-GTAACACTGGGAAAGGCGAGCCCGTTGTCACAGACAGTGTGT------GGTGGGCGGATTCCTGAAGCGCAGAATGTTACTCAC------------------CGCCATGTGGCAGA--GG---------TTTGCT---------------------------GAGGGAGTCTGAGCAGGGCACGCTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165663440 217 - 171882078 CATTGAATC----CTGCGTCCCATCAAGTTAGG-TGCCTGG--AGAGCAGGGA---A---GGAAGA----CCC--AGGAAG--CAGAAGGTGCTTACCCAGAAGCGCCGAGT-GTAACACTGGGAAAGGCGAGCCCGTTGTCACAGACAGTGTGT------GGTGGGCGGATTCCTGAAGGGCAGAATGTTACTCAC------------------CGCCATGTGGCAGA--GG---------TTTGCT---------------------------GAGGGAGTCTGAGCAGGGCACGCTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       518543 217 +   2379783 CATTGAATC----CTGCGTCCCATCAAGTTAGG-TGCCTGG--AGAGCAGGGA---A---GGAAGA----CCC--AGGAAG--CAGAAGGTGCTTACCCAGAAGCGCCGAGT-GTAACACTGGGAAAGGCGAGCCCGTTGTCACAGACAGTGTGT------GGTGGGCGGATTCCTGAAGGGCAGAATGTTACTCAC------------------CACCATGTGGCAGA--GG---------TTTGCT---------------------------GAGGGAGTCTGAGCAGGGCACGCTCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       475006 217 +   4116138 CATTGAATC----CTGCGTCCCATCAAGTTAGG-TGCCTGG--AGAGCAGGGA---A---GGAAGA----CCC--AGGAAG--CAGAAGGTGCTTGCCCAGAAGCGCCGAGT-GTAACACTGGGAAAGGCGAGCCCGTTGTCACAGACAGTGTGT------GGTGGGCGGATTCCTGAAGGGCAGAACGTTACTCAC------------------CGCCACGTGGCGGA--GG---------TTTGCT---------------------------GAGGGAGTCTGAGCAGGGCACGCCCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53907603 217 +  58131712 CATTGAATC----CTGCGTCCCATCAAGTTAGG-TGCCTGG--AGAGCAGGGA---A---GGAAGA----CCC--AGGAAG--CAGAAGGTGCTTACCCAGAAGCGCCGAGT-GTAACACTGGGAAAGGCGAGCCCGTTGTCACAGACAGTGTGT------AGTGGGCGGATTCCTGAAGGGCAGAATGTTACTCAC------------------CGCCACGTGGCGGA--GG---------TTTGCT---------------------------GAGGGAGTCTGAGCAGGGCACGCCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       527740 217 -   3636681 CATTGAATC----CTGCGTCCCATCAAGTTAGG-TGCCTGG--AGAGCAGGGA---A---GGAAGA----CCC--AGGAAG--CAGAAGGTGCTTACCCAGAAGCGCCGAGT-GTAACACTGGGAAAGGCGAGCCCGTTGTCACAGACAGTGTGT------GGTGGGCGGATTCCTGAAGGGCAGAATGTTACTCAC------------------TGCCACGTAGCGGA--GG---------TTTACT---------------------------GAGGGAGTCTGAGCAGGGCACGCCCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       507324 213 -   4457520 CATTGAATC----CTGTGTCCCATCAAGTTAGG-TGCCTGG--AGAGCAGGGA---A---GGAAGA----CCC--AAGAGG--CAGAAGGTGCTTACCCAGAAGCGCCAAGT-GTAACACTGGGAAAGGCGAGCCCGTCGTCACAGACAGTGTGT------GGTGGGTGGATTCCTGAAGGGCAGAATGTT----AC------------------CGCCACGTGGCGGA--GG---------TTTGCT---------------------------GAGGGAGTCTGAGCAGGGCACGCCCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154537976 156 - 158406734 CATTGACTC----CTGCATCCCATCAGTTTAGG-TGACCCA--CGAGGCAGA----A---GGTG----------------------------CTTACCCAGAAGCACCAAGT-GTAACACTGGGAGAGGCAACCCCTTTGTCACTGACAGTGTCTG----TGGTCAGCAGATTCCCGAAAGGCAGAGTGTTACTCAT------------------CAGCA--------------------------------------------------------------------------------T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             370402 145 -   2682657 CATTGACTC----CGGCGTGCCATCAGTTCAGG-TGCCTGG--AGAGCAGGG----A---GGAA------------------------------GACCCAGGAG------GC-AGAACACTGGGAAAGGCGAGCCCTTTGTCACTGGCAGAGTGTG----TGGTCGGCAGACTCCCAGAGGGCGGAGTGTGAC---T------------------CAGCA--------------------------------------------------------------------------------T
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       396637 176 -   2086007 catggactc----ctgtgtgccatcagtTTAGG-TGCCTGG--AGAGCAGGG----A---GGAAGA----CCC--AGGAGG--CAGAAGGTGCTTACCCAGAAGCACCAACC-ATAACACTGGGCAAGGCAAGCCCTTTGTCCCTGACAGTGTTTG----TGGTCGGCAGACTCCCGAAGGGCAGAGTGTTACTCCT------------------CACCA--------------------------------------------------------------------------------T
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       457538 176 +   3831555 CATTGACTC----CCGCGTCCCATCAGTTTAGG-TGCCTGG--AGAGCAGGG----A---GGAAGA----CCC--AGGAGG--CAGAAGGTGCTTACCCAGAAGCACCAAGT-ATAACACTGGGAAAGGCGAGCCCTTTGTCATTGACAGTGTGTG----TGGTCGACAGATTCCCAAAGGGCAGAGTGTTACTCAT------------------CACTA--------------------------------------------------------------------------------T
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             477925 164 +   3845361 -atttaatcttcactccagcccattgaggtagg-caccagg--agagcaggta---A---GGCAGAAGCCCCT--GGGGGT--CAGAGGGCACTAACTCAGAAGCAC--AGT-GT--------------------------------CTGTGTGT------GGTTGTCTTCTTCCTGCAGAG------GCTGCT---------------------------GTGGT-------------------------------------------------GAGGGGAGCCGAGTTAGGCACGCCCT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56156171 189 + 145441459 -------TC----CTGC---TCAGCTCGTTAGGACGGCTAGCTAGAGCTTTGA---A---GGAAGAA---GCT--AGGGAT--CAGAAGA-GTTTACTTCACGACACTAA--------------------------TATGTCACTGAT-GTGGGT------GATCAGTTCACTCCTGAAGGTCATGGCACTGC----------------------CTTCATGTTGCAGA--GA---------TGACAT------------GGTCGGTG------AAGAAGAGCCTGAGCTGGATCTGAGGT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60057165 277 -  91889043 -ATTTAATTTTCACCCCAACCCATCAAAGTAGT-TGTGTGG--GGAGCAGGAA---AAGGGAAAGA----CCTGGGGGAGG--TAGAGGATGCTTATCTAGAAGCACTTAGTCATAGCACTGGAAAAGACAAGTCCTTCATTACTGACAGTATTTG-GCATGGCCAGCTGTTTCCCACAGAACCAGGCATTGTTTATGCCACTTTGCAGCCATGGCACTGTGGTGCAGA--GAACAAAATATCTTCCCCAA--------AGCTGGACAGCTGGTGAGAAGAACCCAAGCAGGATGTGTCAT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             441197 248 +    563711 CATC-ATTC----CTCACCACAGATAAGGCAGT-TGCATGG--GGCATAGGTAAGGA---GGAAGA----CGT--GGGAAGGCTGGAGGCTACTTGCCCAGAAGCAC-AATC-ATGATCCAGGGAGAGGCAGGTCCTTCATTACTGACAATACAACTATATAGTCAGTGAATTCCCCGAGGGAGAAGTGGTGCTGAG------------------GGATAGGTTGCTTAATGC---------CTTAGTTAAGATCATACAGCTGGTGG-------GTGTGAGAGGGAGTAGAATGTAGTGT
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13529402 237 +  16154928 I

a score=2933225.000000
s hg38.chr15_KI270851v1_alt    208579 184 +    263054 TCTCACTGAG-T-CTTTCCTTCCACAGGACAAGTGGACCTGGACCTGCTGCGGTGCCAGCAGTTGAAGCTATACATCCTGAAAGCAGGTCGGGCGCTGTTCTCCCACCAGGATAAACTGCGGCAGATCCTGTCTCAGCCAGCTGTTCAGGAGACTGGAACTGTTCACACAGGTG-----------T--CTTTTTAAAA--------------------------------------------------------------A
s panTro5.chr15               9595699 184 +  83230942 TCTCACTGAG-T-CTTTCCTTCCGCAGGACAAGTGGACCTGGACCTGCTGCGGTGCCAGCAGTTGAAGCTATACATCCTGAAAGCAGGTCGGGCGCTGCTCTCCCACCAGGATAAACTGCGGCAGATCCTGTCTCAGCCAGCTGTTCAGGAGACTGGAACTGTTCACACAGGTG-----------T--CTTTTTAAAA--------------------------------------------------------------A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74129128 184 -  99763055 TCTCACTGAG-T-CTTTCCTTCCGCAGGACAAGTGGACCTGGACCTGCTGCGGTGCCAGCAGTTGAAGCTATACATCCTGAAAGCAGGTCGGGCGCTGCTCTCCCACCAGGATAAACTGCGGCAGATCCTGTCTCAGCCAGCTGTTCAGGAGACTGGAACTGTTCACACAGGTG-----------T--CTTTTTAAAA--------------------------------------------------------------A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       173372 184 -    281578 TCTCACTGAG-T-CTTTCCTTCCGCAGGACAAGTGGACCTGGACCTGCTGCGGTGCCAGCAGTTGAAGCTATACATCCTGAAAGCAGGTCGGGCGCTGCTCTCCCACCAGGATAAACTGCGGCAGATCCTGTCTCAGCCAGCTGTTCAGGAGACTGGAACTGTTCACACAGGTG-----------T--CTTTTTAAAA--------------------------------------------------------------A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71035725 184 + 121039945 TCTCACTGAG-T-CTTTCCTTCCACAGGACAAGTGGACCTGGACCTGCTGCGGTGCCAGCAGTTGAAGCTATACATCCTGAAAGCAGGTCGGGCGCTGCTCTCCCACCAGGATAAACTGCGGCAGATCCTGTCTCAGCCAGCTGTTCAGGAGACTGGAACTGTTCACACAGGTA-----------T--CTTTTTAAAA--------------------------------------------------------------A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164342697 184 - 169600520 TCTCACTGGA-T-CTCTCCTTCCACAGGACAAGTGGACCTGGACCTGCTGCGGTGCCAGCAGTTGAAGCTATACATCCTGAAAGCAGGTCGGGCGCTGCTCTCCCACCAGGATAAACTGCGGCAGATCCTGTCTCAGCCAGCTGTTCAGGAAACTGGAACTGTTCATGCAGGTA-----------T--CTTTTtaaaa--------------------------------------------------------------a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165663657 184 - 171882078 TCTCACTGGA-T-CTCTCCTTCCACAGGACAAGTGGACCTGGACCTGCTGCGGTGCCAGCAGTTGAAGCTATACATCCTGAAAGCAGGTCGGGCGCTGCTCTCCCACCAGGATAAACTGCGGCAGATCCTGTCTCAGCCAGCTGTTCAGGAAACTGGAACTGTTCATGCAGGTA-----------T--CTTTTtaaaa--------------------------------------------------------------a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       518760 184 +   2379783 TCTCACTGGA-T-CTCTCCTTCCACAGGACAAGTGGACCTGGACCTGCTGCGGTGCCAGCAGTTGAAGCTATACATCCTGAAAGCAGGTCGGGCGCTGCTCTCCCACCAGGATAAACTGCGGCAGATCCTGTCTCAGCCAGCTGTTCAGGAAACTGGAACTGTTCATGCGGGTA-----------T--CTTTTtaaaa--------------------------------------------------------------a
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       475223 184 +   4116138 TCTCACTGGA-T-CTCTCCTTCCACAGGACAAGTGGACCTGGACCTGCTGCGGTGCCAGCAGTTGAAGTTATACATCCTGAAAGCAGGTCGGGCGCTGCTCTCCCACCAGGATAAACTGCGGCAGATCCTGTCTCAGCCAGCTGTTCAGGAAACTGGAACTGTTCATGCAGGTA-----------T--CTTTTAaaaa--------------------------------------------------------------a
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53907820 184 +  58131712 TCTCACTGGA-T-CTCTCCTTCCACAGGACAAGTGGACCTGGACCTGCTGCGGTGCCAGCAGTTGAAGCTATACATCCTGAAAGCAGGTCGGGCGCTACTCTCCCACCAGGATAAACTGCGGCAGATCCTGTCTCAGCCAGCTGTTCAGGAAACTGGAACTGTTCATGCAGGTA-----------T--CTTTTtaaaa--------------------------------------------------------------a
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       527957 184 -   3636681 TCTCACTGAA-T-CTCTCCTTCCACAGGACAAGTGGACCTGGACCTGCTGCGGTGCCAGCAGTTGAAGCTATACATCCTGAAAGCAGGTCGGGCGCTGCTCTCCCACCAGGATAAACTGCGGCAGATCCTGTCTCAGCCAGCTGTTCAGGAAACTGGAACTGTTCATGCAGGTA-----------T--CTTTTtaaaa--------------------------------------------------------------a
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       507537 184 -   4457520 TCTCACTGAG-T-CTCTCCTTCCACAGGACAAGTGGACCTGGACCTGCTGCGGTGCCAGCAGTTGAAGCTATACATCCTGAAAGCAGGTCGGGCGCTGCTCTCCCACCAGGATAAACTGCGGCAGATCCTGTCTCAGCCAGCTGTTCAGGAGACTGGAACTGTTCACGCAGGTA-----------T--CTTTTTAAAA--------------------------------------------------------------A
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154538132 242 - 158406734 TCCCACTGAG-T-CTTTCCTTCCGTAGGACAAGTGGACCTGGACCTGCTGCGGCGCCAGCAGTTGAAGCTCTACATCCTGAAAGCAGGGCGGGCACTGCTCTCCCACCAGGACAAACTGCGGCAGATCCTGTCTCAGCCAGCTGTCCAGGAGACTGGAACTGTTCACGCAGGTA-----------T--CTTTTTAAAAAGTATTTTA----TGGTTTTTTTTTTTTTTTTTGCAGATGAGAAAGCTGAAAAGGCATACAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             370547 238 -   2682657 TCTCACTGAG-T-CTTTCCTTCCGTAGGACAAGTGGATCTGGACCTGCTGCGGTACCAGCAGTTGAAGCTGTACATCCTGAAAGCAGGGCGGGCGCTGCTCTCCCACCAGGACAGACTGCGGCAGATCCTGTCTCAGCCAGCTGTCCAGGAGACTGGAACTGTTCACACAGGTA-----------T--CTTTTTAAAAAGtatttta--------ttttattttattttTTGCAGATAAGAAAGCTGAGAAGGCATACGAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       396813 244 -   2086007 TCTCACCGAG-T-CTTTCCTTCCATAGGACAAGTGGACCTGGACCTGCTGCGGTGTCAGCAGTTGAAGCTGTACATCCTGAAAGCAGGTCGGGCGCTGCTCTCCCACCAGGACAAACTGCGGCAGATCCTGTCTCAGCCAGCTGTCCAGGAGACTGGAACTGTTCACGCAGGTA-----------T--CTTTTTTAAAAGTAtttta--ttttatttattttttttttttttCAGATAAGAAAGCCGAGAAGGCAAACAGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       457714 241 +   3831555 TCTCACCGAG-T-CTTTCCTTCCGTAGGACAAGTGGACCTGGACCTGCTGCGGTGCCAGCAGTTGAAGCTGTACATCCTGAAAGCAGGTCGGGCACTGCTCTCCCACCAGGACAAACTGCGGCAGATCCTGTCCCAGCCGGCTGTCCAGGAGACTGGAACTGTTCACGCAGGTA-----------T--C-TTTTAACAAGGAttttatgttttttttttttttttt----CGCAGATAAGAAAGCTGAGAAGGCATACAAA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13529639 185 +  16154928 TCTCACTGAGCT-CTTTTCCTCCACAGGACAAGTGGACCTGGACCTGCTGCGATGCCAGCAGTTAAAGTTGTACATACTAAAAGCAGGCCGAGCACTGCTCTCCCACCAAGATAAACTGAGGCAGATCTTGTCTCAGCCAGCTGTTCAGGAGACGGGAACTGTTCATACAGGTA-----------T--CTTTtaaaaa--------------------------------------------------------------a
i proCoq1.NW_012148396v1    I 237 I 945
s otoGar3.GL873689             478089 182 +   3845361 -TTCACTGGG---CTTTCCCTCCACAGGACAAGTGGATCTGGACCTGCTGCGCTCCCAGCAGCTGAAGTTATACATCCTGAAAGCTGGCCGCGCGCTGCTCTCCCACCAGGACAAGCTGAGGCAGATCTTGTCTCAGCCAGCTATTCAGGAGGCGGGAACTGTTCATGCAGGTA-----------T--CTTTTTATGa--------------------------------------------------------------a
i otoGar3.GL873689          C 0 I 1
s mm10.chr7                  56156360 196 + 145441459 TCTTACTGGGTT-CCTTTGTTCCGTAGGGCAAGTAGACTTGGACCTGCTGCGGAGCCAGCAGTTAAAGCTGTACATCCTGAAAGCAGGGCGGGCACTGCTTTCCCACCAAGACAAGCTGAGGCAGATACTATCTCAGCCCGCGGTTCAGGGGACTGGAACTCTTCAGACAGGTATATTGTTTTCTT--TTTCTTAGAA--------------------------------------------------------------A
i mm10.chr7                 C 0 I 1
s canFam3.chr3               60057442 185 -  91889043 TTTCGCTAAG-TCCTTTTCTCCCACAGGACAAGTAGATCTGGACCTGCTGAGGTGCCAGCAGTTAAAACTCTACATCCTGAAGGCGGGCCGTGCACTGCTTTCCCACCAGGACCAGCTCAGGCAAATCTTGTCTCAGCCAGCTGTTCAGGATGTCATAGCTGCTCACACAGGTA-----------T--CTTTTtaagg--------------------------------------------------------------a
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             441445 187 +    563711 TCTTACTTAGTT-CTTTTCTTCCATAGCACAAGTAGACCTGGATCTGCTGAGATGTCAACAATTAAAATTGTACATATTGAAAGCAGGCCGAGCATTGCTTTCCCACCAAGATAAATTACGGCAAATCTTGTCTCAACCAGCTATTCAGGAGACTGGAACTGTTCATACAGGTA-----------TACCTTTTTAAGA--------------------------------------------------------------A
i dasNov3.JH562051          C 0 C 0

a score=2425804.000000
s hg38.chr15_KI270851v1_alt    208763 235 +    263054 -GTTCTTAAATC-TTTATAAGAAGGGCAG-----------TAGAAAGTAGACAAAGGAAGTGAATAATCAGTTCAT---------------------------------AAAAATGGA-CA--TAGGTGGCTTATAAATGTACAAAACAGACACGTGGCCTGCCCAGCAACCACC-A-ACTGTGAATAAAATTGTCATCGTCATCTTATAAG----ACA-------AGACTGAGGGCATCTGGT-GGGTGGGGAGGGAAAAAG-----GTATTTTCATGccttcccatttaaagtgtgctgca
s panTro5.chr15               9595883 235 +  83230942 -GTTCTTAAATC-TTTATAAGAAGGGcaa-----------tagaaagtagacaaaggatgtgaataatcagttcat---------------------------------aaaaatgga-ca--taggtggcttataaatgtaCAAGACAGACACGTGGCCTGCCCAGCAACCACC-A-ACTGTGAATAAAATTGTCATCGTCATCTTATAAG----ACA-------AGACTGAGGGCATCTGGT-GGGTGGGGAGGGAAAAAG-----GTATTTTCATGccttcccatttaaagtgtgctgca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74129312 235 -  99763055 -GTTCTTAAATC-TTTATAAGAAGGGCAG-----------TAGAAAGTAGACAAAGGATGTGAATAATCAGTTCAT---------------------------------AAAAATGGA-CA--TAGGTGGCTTATAAATGTACAAGACAGACACGTGGCCTGCCCAGCAACCACC-A-ACTGTGAATAAAATTGTCATCGTCATCTTATAAG----ACA-------AGACTGAGGGCATCTGGT-GGGTGGGGAGGGAAAAAG-----GTATTTTCATGccttcccatttaaagtgtgctgca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       173556 235 -    281578 -GTTCTTAAATC-TTTATAAGAAGGGcag-----------tagaaagtagacaaaggatgtgaatagtcagttcat---------------------------------aaaaatgga-ca--taggtggcttataaatgtaCAAGACAGACACGTGGCCTGCCCAGCAACCACC-A-ACTGTGAATAAAATTGTCATCGTCATCTTATAAG----ACA-------AGACTGAGGGCATCCGGT-GGGTGGGGAGGGAAAAAG-----TTATTTTCATGcctttccatttaaagtgtgctgca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71035909 221 + 121039945 -GTTCTTAAATC-TTTATAAGAAGGGcag-----------tagaaagtagacaaaggatgtgaacaatcagttcat---------------------------------aaaaatgga-ca--taggtggcttataaat---------aGACACGTGGCCTGCCCAGCAACCACC-A-ACTGTGAATAAAATTGTCATCGTC-----ATAAG----AGA-------AGACTGAGGGCATCTGGT-GGATGGGGAGGGAAAAAG-----GTATTTTCATGccttcccatttaaagtgtggtgca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164342881 234 - 169600520 -gttcttaaagc-tttataagaaaggcag-----------tagaaagtagacaaaggatgtgaacaatcagttcat---------------------------------aaaaatgga-ca--tagatggcttataaatatacaagaaagacaagtggcct-cctagcaaccaCC-A-ACTGTGGATAAAATTGTCATCGTCATCTTATAAG----ACA-------AGACAGAGGGCATCTGGT-GGGTGGGGAGGGAAAAAG-----GTATTTTCATGccttcccgtttaaagtttggtgca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165663841 234 - 171882078 -gttcttaaagc-tttataagaaaggcag-----------tagaaagtagacaaaggatgtgaacaatcagttcat---------------------------------aaaaatgga-ca--tagatggcttataaatatacaagaaagacaagtggcct-cctagcaaccaCC-A-ACTGTGGATAAAATTGTCATCGTCATCTTATAAG----ACA-------AGACAGAGGGCATCTGGT-GGGTGGGGAGGGAAAAAG-----GTATTTTCATGccttcccgtttaaagtttggtgca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       518944 235 +   2379783 -gttcttaaagc-tttataagaaaggcag-----------tagaaagtagacaaaggatgtgaacaatcagttcat---------------------------------aaaaatgga-ca--tagatggcttataaatatacaagaaagaCAAGTGGCCTGCCTAGCAACCACC-A-ACTGTGGATAAAATTGTCATCGTCATCTTATAAG----ACA-------AGACAGAGGGCATCTGGT-GGGTGGGGAGGGAAAAAG-----GTATTTTCATGccttcccgtttaaagtttggtgca
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       475407 235 +   4116138 -gttcttaaagc-tttataagaaaggcag-----------tagaaagtagacaaaggatgtgaacaatcagttcat---------------------------------aaaaatgga-ca--tagatggcttataaatatacaagaaagaCAAGTGGCCTGCGTAGCAACCACC-A-ACTGTGGATAAAATTGTCATCATCATCTTATAAG----ACA-------AGACAGAGGGCATCTGGT-GGGTGGGGAGGGAAAAAG-----GTATTTTCATGccttcccgtttaaagtttggtgca
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53908004 235 +  58131712 -gttcttaaagc-tttataagaaaggcag-----------tagaaagtagacaaaggatgtgaacaatcagttcat---------------------------------aaaaatgga-ca--tagatggcttataaatatacaagaaagaCAAGTGGCCTGCCTAGCAACCACC-A-ACTGTGGATAAAATTGTCATCGTCATCTTATAAG----ACA-------AGACAGAGGGCATCTGGT-GGGTGGGGAGGGAAAAAG-----GTATTTTCATGccttcccgtttaaagtttggtgca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       528141 232 -   3636681 -gttcttaaagc-tttataagaaaggcag-----------tagaaagtagacaaaggatgtgaacaatcagttcat---------------------------------aaaaaagga-ca--tagatggcttataaatatacaagaaagaCAAGTGGCCTGCCTAGCAACCACC-A-ACTGTGGATAAAATTGTCATCGTCATCTTATAAG----ACA-------AGACAGAGGGCATCTGGT-GGGTGGGGAGGGAAAAAG-----GTATTTTCATGCCTTC---Tttaaagtttggtgca
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       507721 235 -   4457520 -GTTCTTAAAGC-TTTGTAAGAAAGGCAG-----------TAGAAAGTAGACAAAGGATGTGAACAATCAGTTTAT---------------------------------AAAAATGGA-CA--TAGATGGCTTATAAATATACAAGAAAGACACGTGGCCTGCCTAGCAACCACC-A-ACTGTGGATAAAATTGTCATCGTCATCTTATAAG----ACA-------GGACAGAGGGCATCTGGT-GGGTGGGGAGGGAAAAAG-----GTGTTTTCATGccttcccatttaaagtgtggtgca
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154538374 236 - 158406734 -GTTCTTAAATC-TTTATTAGAAAGGCAG-----------TAGaaaatagacaaaggatgtgaacagtcagttcata--------------------------------aaaaatgga-ca--taaatggcttaaatatgtgCGAGAAAGACACGTGGCCCGCCCAGCAACCACC-A-ACTGTGAATACAA---TCATCATCATCTTATAAGACAAACA-------AGACTGAGGGCATCTGGT-GGGTGGGGAGGGAGAAAG-----GTATTTTCATGCC-TCccatttaaagtgtggcacg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             370785 233 -   2682657 -GTTCTTAAAGC-TTTATAAGAAAGGcag-----------tagaaaatagacaaaggatgtgaacagtcacttcat---------------------------------aaaaatgaa-ca--tagagggcttaaatatgtgGGAGAAAGTCACGTGGCCCGCCCAGCAGCCACC-A-ACTGTGAATAAAA---TCATCATCATCTCATAAGACAAACA-------AGAC-AAGGGCATCTGGT--GGTGGGGAGGGAGAAAG-----GTATTTTCATGCC-TCccatttaaagtgtggcacg
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       397057 233 -   2086007 -GTTCTTAAAGC-TTTATAAGAAAGGCAG-----------TAGAAAATAGAC-AAGGATGTGGACAGTCAGTTCAT---------------------------------AAAAATGGA-CA--TAGATGGCTTAAATATGTGGGAGAAAGACACGTGGCCTGCCCAGCAACCACC-A-ACCGTGAATAAAA---TCATCATCATCTTATAAGACAAACA-------ATAT-GAGGGCATCTGGT-GGGTGGGGAGGGAGAAAG-----GTATTTTCATGCC-TCccatttaaagtgtggcacg
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       457955 235 +   3831555 -GTTCTTAAAGC-TTTATAGGAAAGGcag-----------tagagaatagacaaaggatgtgaacagtcagttcat---------------------------------aaaaatgga-ca--taaatggcttaaatgtgtgCGAGAAAGACATGTGGCCTGCCCAGCAACCACC-G-ACTGTGGATAAAA---TCATCATCATCTTACAAGACAAACA-------AGACTGAGGGCCTCTGGT-GGGTGGGGAGGGAGAAAG-----GTATTTTCATGCC-TCccatttaaagtgtggcgcg
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             478272 213 +   3845361 -gatcttacaga-tttgtaagaaaggcagatactccagt-aggaaagtaggcaaaggacatgaacaagcagttcat---------------------------------aaaagggtc-tcattagatggcttttaaatgt-caagaaagatacATGATCGG----------------------------ATGGTGATTGCTGTCTTCCATGGTGAGCG-------AGACTG---------GGT-GGGTGAGGAGAGAAACAG------TATCCTCACGGCTCGCTGATTATAGCATGCTG-g
i otoGar3.GL873689          I 1 C 0
s mm10.chr7                  56156557 225 + 145441459 -GTTTTAAATACATTTGAGAGAAAGGAAGATACTCTAGTAGAAAAAATATACAAGAGATATGAATAATCAGGTCTT---------------------------------AAAAGGAGATTA--CGGGTGTCTTACACCCACACAAG---GCTGTGGGGCCTGACTGCTAGTCACC-A-ACTGTTAATGCAG------TTGTCATCTTAAAAG----AT-------------TTGTGAATCTGCG-GGGTGAGGTGGAA-------------CTCTCATGCCTAGCTGTGTAAGCTATGGTACA
i mm10.chr7                 I 1 I 7
s canFam3.chr3               60057628 278 -  91889043 -gctcttataga-tctgaaaggaaggcaggtactccca--tagaaaacagataaaagacttgaataagtagttcataaaagggataaaagacttgaataagtagtccataaaagggga-aa--cagatggcttctaaatgtatg----agatatgcaacctgaccaataatcaac-agggtgtaaatGGCAGTGTCATTGTCTTCTAGTAC-----AAA-------AGATTGATGACATCTGGT-AAAAGGGAGGGAAAAAAAAAACAGTGCTCTCCTGCATCGAtatttaaagtgtggctca
i canFam3.chr3              I 1 C 0
s dasNov3.JH562051             441632 245 +    563711 GTTtcttataga-tttgtaagaaaggcaaatgttctact-tgaaaaacaaa--aacgacatgaacaagcagtacat---------------------------------taaagggga-aatttagatggcttataaatgtgc-agaaagttgtgcaactcatgtagtcatcaaaga-gctacagatGAGA---------TCGTTTTCTGAG----ACATGAATACAGGTGGACAGTGCTTGGCAGAGAAGGGTGGGGAACCA-----GCACTCCAATGGTGTGCGATCTAAACTGTGGTCCC
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I

a score=389108.000000
s hg38.chr15_KI270851v1_alt    208998 36 +    263054 tgggtcagcaagattggtggcacacaggtatgtgtt
s panTro5.chr15               9596118 36 +  83230942 tgggtcagcaagattggtggcacgcaggtatgtgtt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74129547 36 -  99763055 tgggtcagcaagattggtggcatgcaggtatgtgtt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       173791 36 -    281578 tgggtcagcaagattggtggcacgcaggtatgtgtt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71036130 36 + 121039945 tgggtaagcaagattggtggcacacaggtatgtgtt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164343115 36 - 169600520 tgggtcagcaaaattgatggcacacgggtatgtgtt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165664075 36 - 171882078 tgggtcagcaaaattgatggcacacgggtatgtgtt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       519179 36 +   2379783 tgggtcagcaaaattgatggcacacgggtatgtgtt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       475642 36 +   4116138 tgggtcagcaaaattgatggcacacgggtatgtgtt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53908239 36 +  58131712 tgggtcagcaaaattgatggcacacgggtgtgtgtt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       528373 36 -   3636681 tgggtcagcaaaattgatggcacacgggtatgtgtt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       507956 36 -   4457520 tgggtcagcaaaattgatggcacacgggtatgcgtt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154538610 36 - 158406734 tggattagcaccgttgatggcacacaggcatgtatt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             371018 36 -   2682657 tgggtcagcaacgttgacggcacacaggcatgtgtt
i saiBol1.JH378292          C 0 I 307
s cebCap1.NW_016107707v1       397290 36 -   2086007 tgggtcagcaacattgatggcacacaggcatgtgtt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       458190 36 +   3831555 tgggtcagcaacgttgatggcacacaggcatgtgtt
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             478485 36 +   3845361 tgggccggcagcattgccagcacttagcaaagtgtt
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60057906 36 -  91889043 tggaccagcagcattgatggcacataggagcatatt
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             441877 14 +    563711 ------------CTGGATGGCATGTA----------
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I

a score=2177916.000000
s hg38.chr15_KI270851v1_alt    209034 214 +    263054 agaaatgcagactcccaggccgcaccccagaccaaagaaat-agagcctgtattgtaacaagatgaacctaagctggttcTTCAAATGCGCGTAAAGCCGCACTCCATGAACATGCTGCTGCTGGGAATTTCAGTTGGTGTAGCCATCTAATGGGCGTCTGAGGAAATGAGTTGGACTTTGAAatgcatagatgtatgtatgtatttatataCTT
s panTro5.chr15               9596154 214 +  83230942 agaaatgcagactcccaggccgcaccccagaccaaagaaat-agagcctgtattgtaacaagTAGAACCTAAGCTGGTTCTTCAAATGCGCGTAAAGCCGCACTCCATGAACACGTTGCTGCTGGGAATTTCAGTTGGTGTAGCCATCTAATGGGCGTCTGAGGAAATGAGTTGATCTTTGACatgcatagatgtatgtatgtatttatataCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74129583 214 -  99763055 agaaatgcagactcccaggccgcaccccagaccaaagaaat-agagcctgtattgtaacaagatgaacctaagctggttcTTCAAATGCGCGTAAAGCCGCACTCCATGAACACGTTGCCGCTGGGAATTTCAGTTGGTGTAGCCATCTAATGGGCGTCTGAGGAAATGAGTTGGTCTTTGACatgcatagatgtatgtatgtatttatataCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       173827 214 -    281578 agaaatgcagactcccaggccgcaccccagaccaaagaaat-agagcctgtattgtaacaagatgaacctaagctggttcttcaaatgcacgtaaagCCGCACTCCATGAACACGCTGCTGCTGGGAATTTCAGTTGGTGTAGCCATCTAATGGGCATCTGAGGAAATGAGTTGGTCTTTGAAatgcatagatgtatgtatgtatttatataCTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71036166 214 + 121039945 agaaatgcagactcctaggccgcaccccagaccaaagaaat-agagcctgtattgtaacaagaAGAACCTAAGCTGTTTCTTCAAACGCGCATAAAGCCGCGCTCCATGAACACGTTGCTGCTGGGAATTTCAGTTGGTGTAGCCATCTAATGGGCGTCTGAGGAAATGAGTTGGACTTTGAAATGCGTAGATGTATGTGTGTATTTATATACTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164343151 214 - 169600520 agaaatgcagactcccaggccgcaccccagaccatagaaat-agaacctgtattgtaacaagaagaacctacgctggttcttcagatgcacatgaaaTAGCACTCCATGAACACGCTGCTGCTGGGAATTTCAGTTGGTGTAGCCGTCTGATAAGCGTCTGAAGAAATGAGACGGACTTTGAAATTCATACATGTAGGTATGTGTTTATATACTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165664111 214 - 171882078 agaaatgcagactcccaggccgcaccccagaccatagaaat-agaacctgtattgtaacaagaagaacctacgctggttcttcagatgcacatgaaaTAGCACTCCATGAACACGCTGCTGCTGGGAATTTCAGTTGGTGTAGCCGTCTGATAAGCGTCTGAAGAAATGAGACGGACTTTGAAATTCATACATGTAGGTATGTGTTTATATACTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       519215 214 +   2379783 agaaatgcagactcccaggctgcaccccagaccatagaaat-agaacctgtattgtaacaagaagaacctacactggttcttcagatgcacatgaaaCAGCACTCCATGAACACGCTGCTGCTGGGAATTTCAGTTGGTGTAGCCATCTGATAAGCGTCTGAAGAAATGAGACGGACTTTGAAATTCATACATGTAGGTATGTGTTTATATACTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       475678 210 +   4116138 agaaatgcagactcccaggctgcaccccagaccatagaaat-agaacctgtattgtaacaagaagaacctacgctggttcttcagatgcacatgaaGCAGCACTCCATGAACACGCTGCTGCTGGGAATTTCAGTTGGTGTAGCCATCTGATAAGCGTCTGAAGAAATGAGACGGACTTTGAAATTCATACAT----GTATGTGTTTATATACTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53908275 214 +  58131712 agaaatgcagactcccaggctgcaccccagaccatagaaat-agaacctgtattgtaacaagaagaacctacgctggttcttcagatgcacatgaaGCAGCACTCCATGAACACGCTGCTGCTGGGAACTTCAGTTGGTGTAGCCATCTGATAAGCGTCTGAAGAAATGAGATGGACTTTGAAATTCATACATGTAGGTGTGTGTTTATATACTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       528409 214 -   3636681 agaaatgcagactcccaggctgcaccccagaccatagaaac-agaacctgtattgtaacaagaagaacctacgctggttcttcagatgcacatgaaGCAGCACTCCATGAACACGCTGCTGCTGGGAATTTCAGTTGGTGTAGCCATCTGATAAGCGTCTGAAGAAATGAGACGGACTTTGAAATTCATACATGTAGGTATGTGTTTATATACTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       507992 214 -   4457520 agaaatgcagactcccaggctgcaccccagaccaaagaaat-aaaacctgtattgtaacaagaAGAACCTACGCTGGTTCTTCAGATGCACGTGAAGCAGCACTCCATGAACACGCTGCTGCTGGGAATTTCAGTTGGTGTAGCCATCTGATGAGCGTCTGAAGAAATGAGACGGACTTTGAAATTCATAGACATAGGTATGTGTTTATGTACTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154538646 210 - 158406734 agaaatgcagactcccaggctgca-cccagaccaaagcagt-agaacgtgtattgtaacaagaagaccctcagctggttcTTCAGATACACGCACAGCAGCACTCCATGAACAC---GCTGCTGGGAATTGAAGTTGGTGTAGCCATCTAATGGGCACTTGAGGATGTGAGTCAGGCTTTGAAATGCATCGATATATGTATGTATTCATATACTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             371361 210 -   2682657 agaaatgcagactcccaggctgca-cccagtccaaagcagt-agaacctgtattggaacaagaagaccctaagctggttcttcaaatgcacaCACAGCAGCACTCAAGGGACAC---GCTGCTGGGAATTTAAGTTGGTGTAGCCATCTAATGGGCGCTTGAGGAAATGAGTCGGACTTTGAAATGCATAGATGTACGTATGTATTCATACACCT
i saiBol1.JH378292          I 307 C 0
s cebCap1.NW_016107707v1       397326 210 -   2086007 agaaacgcagactcccaggctgca-cccagaccaaagcaat-agaacctgtattgtaacaagaAGACCCTAAGCTGGTTCTTCAAATGCCCGCACAGCAGCACTCCATGAACAC---GCTGCTGGGAATCGAAGTTGGTGTAGCCATCTAATGGGCGCTGGAGGAAATGAGTCGGACTTTGAAATGCATAGATGTACCTGTGTATTCATATACTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       458226 210 +   3831555 agaaatgcagactcccaggctgca-cccagaccaaagcaat-agaacctgtattgtaataagaagaccctaagctggttcttcaaatgcacGCACAGCAGCGCTCCATGAACAC---GCTGCTGGGAATTTAAGTTGGTGTAGCCATCAAATGGGCGCTTGAGGAAATGAGTCGGACTTTGAAATGCATAGATGTATGTATGTATTCATATACTT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             478521 178 +   3845361 agaaatgcaga-tcccaccctgc--cccagaTGAGAGAAATCATAACCTG------------------------TGGCTCCTTGTATGCGCCTAAAGCGGCACTCTATGAACAT---GTGAGTGGGAGGTGAAGTCGGCACA-CCCTCTCATAGGCATTTGAGGAAACACATCAGACTTTAAGATGCATAAAT----GTGTGTATTTATACAC--
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60057942 207 -  91889043 agacacgcagactcttacgctgtaccccagacctaagaaatcagagtttgcattttaataagg----cct--tcaggtagtttatacatgtataaagtAGTACTGctttaacacattgctagtgggaatctaagttggtacaactatataatgggcatttgaggaaat--gttacactttaaaatgcatatacACACATATCTATATCTGTATCT
i canFam3.chr3              C 0 I 222
s dasNov3.JH562051             441891 160 +    563711 GGAACTGCA---TCCCAGACTTCA------------------AGATCATGT-------TAACAAGACCCTAAGGGA----TTCACATGCATGTAGTGATGCTCTGccctaacacataattagtgtcagttgga-ctggtacagccttctagggggcatttgagggaatgtgtcagactttaaa----------------------tgataccccc
i dasNov3.JH562051          C 0 I 2
e mm10.chr7                  56156782   7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I

a score=105411.000000
s hg38.chr15_KI270851v1_alt    209248 10 +    263054 TGGCCCAGCA
s panTro5.chr15               9596368 10 +  83230942 TGACCCAGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74129797 10 -  99763055 TGGCCCAGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174041 10 -    281578 TGGCCCAGCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71036380 10 + 121039945 TGACCCAGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164343365 10 - 169600520 TGATACAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165664325 10 - 171882078 TGATACAGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       519429 10 +   2379783 TGATACAGCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       475888 10 +   4116138 TGATACAGCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53908489 10 +  58131712 TGATACAGCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       528623 10 -   3636681 TGATACAGCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       508206 10 -   4457520 TGACCCAGCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154538856 10 - 158406734 TGACCCAGCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             371571 10 -   2682657 TGACCCAGCA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       397536 10 -   2086007 TGACCCAGCA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       458436 10 +   3831555 CGACCCAGCG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             478699 10 +   3845361 TGAACTAGCA
i otoGar3.GL873689          C 0 C 0
s dasNov3.JH562051             442053 10 +    563711 tgacccagta
i dasNov3.JH562051          I 2 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e canFam3.chr3               60058149 222 -  91889043 I

a score=440080.000000
s hg38.chr15_KI270851v1_alt    209258 34 +    263054 AGTCATTCTGTGGGACTTTATCACACGAAAAGGC
s panTro5.chr15               9596378 34 +  83230942 AGTCATTCTGTGGGACTTTATCACACGAAAAGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74129807 34 -  99763055 AGTCATTCTGTGGGACTTTATCACACGAAAAGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174051 34 -    281578 AGTCATTCTGTGGGACTTTATCACACGAAAAGGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71036390 34 + 121039945 AGTCATTCTGTGGGACTTTATCATACGAAAAGAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164343375 34 - 169600520 AGTCATTCTGTGGGACTTTATCACACGAAGAGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165664335 34 - 171882078 AGTCATTCTGTGGGACTTTATCACACGAAGAGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       519439 34 +   2379783 AGTCATTCTGTGGGACTTTATCACACGAAGAGGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       475898 34 +   4116138 AGTCATTCTGTGGGACTTTATCACACGAAGAGGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53908499 34 +  58131712 AGTCATTCTGTGGGACTTTATCACACGAAGAGGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       528633 34 -   3636681 AGTCATTCTGTGGGACTTTATCACACGAAGAGGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       508216 34 -   4457520 AGTCATTCTGTGGGACTTTATCACACGAAGAGGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154538866 34 - 158406734 AGTAATTCTGTGGGAATTTATCACACGAAAAGGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             371581 34 -   2682657 AGTCATTCTGTGGGAATTTATCACATGAAACGGC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       397546 34 -   2086007 AGTCATTCTGTGGGAATTTATCACACGAAAAGGC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       458446 28 +   3831555 AGTCATTCTGTG------TATCACACGAAAAGGC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             478709 34 +   3845361 AATCTTCTTGTGGGAATTTATCACACAAAAAGGC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60058371 34 -  91889043 AGTTATCTTCTGGAAATTTATCACATTAAAAGGC
i canFam3.chr3              I 222 C 0
s dasNov3.JH562051             442063 34 +    563711 attcaccttctgggaatttatcacaagaacaggc
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I

a score=122469.000000
s hg38.chr15_KI270851v1_alt    209292 10 +    263054 ATGTAAAGAT--
s panTro5.chr15               9596412 10 +  83230942 ATGTAAAGAT--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74129841 10 -  99763055 ATGTAAAGAT--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174085 10 -    281578 ATGTAAAGAT--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71036424 10 + 121039945 ATGTAAAGAT--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164343409 10 - 169600520 ATGTAAAGAT--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165664369 10 - 171882078 ATGTAAAGAT--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       519473 10 +   2379783 ATGTAAAGAT--
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       475932 10 +   4116138 ATGTAAAGAT--
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53908533 10 +  58131712 ATGTAAAGAT--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       528667 10 -   3636681 ATGTAAAGAT--
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       508250 10 -   4457520 ATGTAAAGAT--
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154538900 10 - 158406734 ATGTAAAGAT--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             371615 10 -   2682657 ATGTAAAGAT--
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       397580 10 -   2086007 ATGTAAAGAT--
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       458474 10 +   3831555 ATGTAAAGAT--
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             478743 10 +   3845361 CTGTAAAGAT--
i otoGar3.GL873689          C 0 C 0
s dasNov3.JH562051             442097 10 +    563711 --atgaagatat
i dasNov3.JH562051          C 0 I 14
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e canFam3.chr3               60058405  0 -  91889043 C

a score=271491.000000
s hg38.chr15_KI270851v1_alt    209302 30 +    263054 AATGTATTCACCACctgggcacagtggctc
s panTro5.chr15               9596422 30 +  83230942 AATGTATTCACCACctgggcacagtgtctc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74129851 30 -  99763055 AATGTATTCACCAgccaggcacaatggctc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174095 30 -    281578 AATGTATTCACCAgccgggcacaatggctc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71036434 30 + 121039945 AATGTATTCACCAgccgggcacaatggctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164343419 30 - 169600520 AATATGTTCACCAgccgggcatggtggctc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165664379 30 - 171882078 AATATGTTCACCAgccgggcatggtggctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       519483 30 +   2379783 AATATGTTCACCAgccgggcatggtggctc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       475942 30 +   4116138 AATATGTTCACCAgccgggcatggtggctc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53908543 30 +  58131712 AATATGTTCACCAgccggtcatggtggctc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       528677 30 -   3636681 AATATGTTCACCAgccaggcatggtggctc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       508260 30 -   4457520 AATATGTTCACCAgccgggcatggtggctc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154538910 30 - 158406734 AATGTATTCACTggccgggcgtggtggctc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             371625 30 -   2682657 AAAGTACTCACTggccgggcgtggtggctc
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       397590 30 -   2086007 AATGTATTCACTggccaggcgtggtggctc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       458484 30 +   3831555 AATGTATTCACTggccgggcgtggtggctc
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             478753 30 +   3845361 AACATATTTACAGTGTCATCACAGCTTCTC
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442107 14 +    563711 I
e canFam3.chr3               60058405  0 -  91889043 C

a score=884449.000000
s hg38.chr15_KI270851v1_alt    209332 108 +    263054 atgcctgtaatcccagcactttgggaggccgaggcg---ggc-ggatcac--gaggtcaggagatagagaccatcctggctaacacggtgaaaccccatctctgctaaaaatac
s panTro5.chr15               9596452 108 +  83230942 atgcctgtaatcccagcactttgggaggctgaggcg---ggc-ggatcac--gaggtcaggagatagagaccatcctggctaacacggtgaaaccccatctctgctaaaaatac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74129881 111 -  99763055 atgcctgtaatccctgcactttgggaggccgaggcgggcggc-ggatcac--gaggtcaggagctagagaccatcctggctaacatggtgaaaccccatttctactaaaaatac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174125 111 -    281578 atgcctgtaatccctgcactttgggaggccgaggcgggtggc-ggatcac--gaggtcaggagatagagaccatcctggctaacatggtgaaaccccatttctactaaaaatac
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71036464 112 + 121039945 acacctgtaatccctacactttgggaggccgaggcaggtggcgggatcac--aaggtcatgagatagagaccatcctggctaacatggtgaaaccccacctctactaaaaatac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164343449 106 - 169600520 atgac--taatcccagcactttgggaggccgaggtg---ggc-ggatcac--gaggtcaggagatcgagaccagcttggccaagatggtgaaactgcatctctattaaaaatac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165664409 106 - 171882078 atgac--taatcccagcactttgggaggccgcggtg---ggc-ggatcac--gaggtcaggagatcgagaccagcttggccaagatggtgaaactgcatctctattaaaaatac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       519513 106 +   2379783 atgac--taattccagcactttgggaggccgaggtg---ggc-ggatcac--gaggtcaggagatcgagaccagcttggccaagatggtgaaactgcatctctattaaaaatac
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       475972 106 +   4116138 atgac--taatcccagcactttgggaggccgaggtg---ggc-ggatcac--gaggtcaggagatcgagaccagcttggccaagatggtgaaactgcatctctattaaaaatac
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53908573 106 +  58131712 atgac--taatcccagcactttgggaggccaaggtg---ggc-ggatcat--gaggtcaggagatcaagaccagcttcgccaagatggtgaaactgcatctctattaaaaatac
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       528707 106 -   3636681 atgac--tactcccagcactttgggaggctgaggtg---ggc-agatcac--gaggtcaggagatcgagaccagcttggccaagatggtgaaactgcatctctattaaaaatac
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       508290 106 -   4457520 atgac--taatcccagcactttgggaagccgaggtg---ggt-ggatcac--gaggtcaggagatcaagaccagcctggccaagatggtgaaactgcatctctattaaaaatac
i colAng1.NW_012115278v1    C 0 I 1
s calJac3.chr6              154538940 110 - 158406734 acacctataatcccagcactttgggaggctgaggtg---ggt-gggtcacctgtggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctttactaaacatgc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             371655 110 -   2682657 acacctgtaatcccagcactttgggaggctgaggtg---agt-ggatcatctgcggtcaggagttcaagaccagcctgtccagcatggtaaaaccccgtctctactaagcatgc
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       397620 110 -   2086007 acacctgtaatcccagcactttgggaggctgatgca---ggt-ggatcacgtgtggtcaggggttcaagaccagcctggccaacatggtgaaaccccgtctctactaaacatgc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       458514 110 +   3831555 acacctatgatcccagcactttgggaggctgaggtg---tgt-ggatcacctgtggtcaggagttcaagaccagcctggccaacatggtgaaaccccttctctactaaacatgc
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56156782   7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442107  14 +    563711 I
e canFam3.chr3               60058405   0 -  91889043 C
e otoGar3.GL873689             478783   0 +   3845361 C

a score=804465.000000
s hg38.chr15_KI270851v1_alt    209440 105 +    263054 aaaacattagctgggcaa--ggtggcagacgcctgcagttctagctactcgggagggtgaggcaggagaatggcatgaatctgtgaggcggagcttgcagtgagccg
s panTro5.chr15               9596560 105 +  83230942 aaaacattagctgggcaa--ggtggcagacgcctgcagttctagctactcgggaggctgacgcaggagaatggcatgaatctgtgaggcggagcttgcagtgatccg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74129992 105 -  99763055 aaaacattagctgggcac--ggtggcggacacctgtagttctagctactcgggaggctgacgcaggagaatggcatgaatccgggaggcggagcttacagtgagccg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174236 105 -    281578 aaaacattagctgggcac--ggtggcggacgcctgtagttctagctactcgggaggctgacgcaggagaatggcatgaatccgggaggcggagcttacagtgagccg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71036576 105 + 121039945 aaaacattagctgggcaa--ggtggtggacgcctgtagttctagctactcgggaggctgacgcaggagaatggcatgaatccgggaggtggagcttgcagtgagctg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164343555 105 - 169600520 aaaaagtttgccggtcat--ggtggtagacacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagcca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165664515 105 - 171882078 aaaaagtttgccggtcat--ggtggtggacacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagcca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       519619 105 +   2379783 aaaaagtttgccggtcat--ggtggtgtacacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagcca
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       476078 105 +   4116138 aaaaagtttgccggtcat--ggtggcggacacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggaggtggagcttgcagtgagcca
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53908679 105 +  58131712 aaaaaatttgccagtcat--ggtggcggacacctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggtggagcttgcagtgagcca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       528813 105 -   3636681 aaaaagtttgccggtcat--ggtggcggacacctgtagtcccagctactcgggaggctgaggcagaagaatggcgtgaacccgggaggtggagcttgcagtgagcca
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       508397 105 -   4457520 aaaaaatttgccagtcat--ggtggcggacacctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacctgggaggtggaacttgcagtgagcca
i colAng1.NW_012115278v1    I 1 C 0
s calJac3.chr6              154539050 104 - 158406734 -aaaaattagctgggtat--aatggtggccacctgtagtcccagctacctgggagcctgaggcgggagaattgcttgaacccaggaggcagaggttgcagtgaacca
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       397730 104 -   2086007 -aaaaattagctgggtat--agtggtgaccgcatgtaatcccagctacctgggagcctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgaaccg
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       458624 106 +   3831555 -aaaaattagctgggtatagagtggtggccgcctgtaatcccagctacctgggagcctgaggcaggagaattgcttgaatccaggaggcagaggttgcagtgaaccg
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56156782   7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442107  14 +    563711 I
e canFam3.chr3               60058405   0 -  91889043 C
e otoGar3.GL873689             478783   0 +   3845361 C
e saiBol1.JH378292             371765   0 -   2682657 C

a score=324350.000000
s hg38.chr15_KI270851v1_alt    209545 60 +    263054 agatggcgccactgcactccagcctgggcaacagagcaagactctgtc----tcaaaaaaa------------aaa
s panTro5.chr15               9596665 64 +  83230942 agatggcgccactgcactccagcctgggcgacagagcaagactctgtcaaaaaaaaaaaaa------------aaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74130097 70 -  99763055 agatggcgccactgcactccagcctggacgacagagcaagactctgtc----tcaaaaaaataaataaaat--aaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174341 67 -    281578 agatggcgccagtgcactccagcctggacgacagagcaagactctgtc----tcaaaaaat-aaataaa----taa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71036681 69 + 121039945 acatcgcgccaccgcagtccagcctgggcgacagagcaagactctgtc----tcaaaaaaataaaaaata---aaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164343660 71 - 169600520 agatcgcaccactgcactccagcctggg-gacagagggagactctgtc----tcaaaaaaacaaaaaaaacaaagc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165664620 71 - 171882078 agatcgtaccactgcactccagcctggg-gacagagggagactctgtc----tcaaaaaaagaaaaaaaacaaagc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       519724 71 +   2379783 agatcgcaccactgcactccagcctggg-gacagagggagactctgtc----tcaaaaaaagaaaaaaaacaaagc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       476183 66 +   4116138 agatcgcaccactgcactccagcctggg-gacagagcgagactctgtc----tcaaaaaaagaaaaaaaa-----c
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53908784 71 +  58131712 agatcgcaccactgcactccagcctggg-gacagagcgagactctgtc----tcaaaaaaagaaaaaaaacaaagc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       528918 71 -   3636681 agatcgcaccactgcactccagcctggg-gacagagggagactctgtc----tcaaaaaaagaaaaaaaacaaagc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       508502 71 -   4457520 agatcgcaccactgcactccagcctggg-gacagagcgagactctgtc----tcaaaaaaagaaaaaaaacaaagc
i colAng1.NW_012115278v1    C 0 C 0
s aotNan1.NW_018503298v1       458730 60 +   3831555 agattgcgccactgcactccagcctgggggacagagtgaaactccatc----tccaaaaaaaaa------------
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442107 14 +    563711 I
e canFam3.chr3               60058405  0 -  91889043 C
e otoGar3.GL873689             478783  0 +   3845361 C
e cebCap1.NW_016107707v1       397834  0 -   2086007 C
e saiBol1.JH378292             371765  0 -   2682657 C
e calJac3.chr6              154539154  0 - 158406734 C

a score=8281.000000
s hg38.chr15_KI270851v1_alt    209605 1 +    263054 a
s panTro5.chr15               9596729 1 +  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74130167 1 -  99763055 a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174408 1 -    281578 a
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71036750 1 + 121039945 a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164343731 1 - 169600520 a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165664691 1 - 171882078 a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       519795 1 +   2379783 a
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       476249 1 +   4116138 a
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53908855 1 +  58131712 a
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       528989 1 -   3636681 a
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       508573 1 -   4457520 a
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             371765 1 -   2682657 a
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       458790 1 +   3831555 a
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56156782 7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442107 14 +    563711 I
e canFam3.chr3               60058405 0 -  91889043 C
e otoGar3.GL873689             478783 0 +   3845361 C
e cebCap1.NW_016107707v1       397834 0 -   2086007 C
e calJac3.chr6              154539154 0 - 158406734 C

a score=629944.000000
s hg38.chr15_KI270851v1_alt    209606 118 +    263054 aaaattggcggggcatagtggtggc---tgcatgtaatgccagctacttgggaggctgaggcaggagaatcacttgaaccggggggtgcg-------gaggttgccgtgtgtgcggattgcagggtgc
s panTro5.chr15               9596730 118 +  83230942 aaaattagcggggtatagtggtggc---tgcatgtaatgccagctacttgggaggctgaggcaggagaatcacttgaaccggggggtgcg-------gaggttgcggtatgtgcgtattgcagggtgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74130168 118 -  99763055 aaaattagtggggtatagtggtggc---tgcatgtaatcccagctacttgggaggctgaggcaggagaatcacttgaaccggggggtgcg-------gaggttgtggtatgtgcgtattgcagggtgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174409 117 -    281578 aaaaTTAATGGGGCATACtggtggc---cgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacc-gggggtgcg-------gaggttgcagtgtgtgcagattgcagggtgc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71036751 125 + 121039945 aTaattagcggggcatagtggtggc---cgcctgtaatcccagctacttgggaggctgaggcaggacaatcacttgaactggggggggcggggggcagaggttgcagtgtgtgcggattgcagggtgc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164343732 114 - 169600520 aaaGttagcgggacatagtggtggcccatgccggtaatcctagctacttgggaggctgaggcaggagaatcacttgaacctgggag-gca-------gatgttgcagtgtgtgcggagtgca------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165664692 114 - 171882078 aaaGttagcgggacatagtggtggcccatgccggtaatcctagctacttgggaggctgaggcaggagaatcgcttgaacctgggag-gca-------gatgttgcagtgtgtgcggagtgca------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       519796 114 +   2379783 aaaGttagcgggacatagtggtggcccatgccggtaatcctagctacttgggaggctgaggcaggagaatcgcttgaacctgggag-gca-------gatgttgcagtgtgtgcggagtgca------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       476250 114 +   4116138 aaaGTTAGTGGGACATAgtggtggcccatgccggtaatcctagctacttgggaggctgaggcaggagaatcgcttgaacccgggag-gca-------gaggttgcagtgtgtgcggagtgca------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53908856 114 +  58131712 aaaGttagcgggacatagtggtggcccatgccggtaatcctagctacttgggaggctgaggcaggagaatcgcttgaacccgggag-gca-------gaggttgcagtgtgtgcggagtgca------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       528990 114 -   3636681 aaaGttagcgggacatagtggtggcccatgccggtaatcctagctacttgggaggctgaggcaggagaatcgcttgaacctgggag-gca-------gaggttgcagtgtgtgcggagtgca------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       508574 114 -   4457520 aaaGttagcaggacatagtggtggcccatgccggtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggag-gca-------gaggttgcagtgtgtgcagagtgca------
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             371766 112 -   2682657 aaaattagctgggtatagtggtggc---cgcctgtaatcccagctacctgggagcctgaggcaggagaattgcttgaatccaggag-gca-------gaggttgcagtgaatggagattgcag-----
i saiBol1.JH378292          C 0 C 0
e mm10.chr7                  56156782   7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442107  14 +    563711 I
e canFam3.chr3               60058405   0 -  91889043 C
e aotNan1.NW_018503298v1       458791   0 +   3831555 C
e otoGar3.GL873689             478783   0 +   3845361 C
e cebCap1.NW_016107707v1       397834   0 -   2086007 C
e calJac3.chr6              154539154   0 - 158406734 C

a score=433263.000000
s hg38.chr15_KI270851v1_alt    209724 64 +    263054 agattgtgccactgcactccagcctgggtgacagagtgagacttcgtctcaaaaaaaataataa
s panTro5.chr15               9596848 64 +  83230942 agattgtgccactgcactccagcctgggtgacagagtgagacttcgtctcaaaaaaaataataa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74130286 64 -  99763055 agattgtgccactacactccagcctgggtgacagagtgagacttcgtctcaaaaaaaataataa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174526 64 -    281578 agattgtgccactgcactccagcctgggcgacagagtgagacttcgcctcaaaaaaaaaaaaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71036876 58 + 121039945 agattgtgccactgcactccagcctgggtgacagagtgagactttgtctcaaaaaa------aa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164343846 56 - 169600520 --attgtgccactgcactccagcctgggcgacagagtgagactttgtctcaaaaaa------aT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165664806 56 - 171882078 --attgtgccactgcactccagcctgggcgacagagtgagaccttgtctcaaaaaa------aT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       519910 56 +   2379783 --attgtgccactgcactccagcctgggcgacagagtgagaccttgtctcaaaaaa------aT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       476364 56 +   4116138 --attgtgccactgcactccagcctgggcgacagagtgagaccttgtctcaaaaaa------aT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53908970 56 +  58131712 --attgtgccactgccctccagcctgggtgacagagtgagaccttgtctcaaaaaa------aT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       529104 56 -   3636681 --attgtgccactgcactccagcctgggcgacagagtgagaccttgtctcaaaaaa------aT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       508688 56 -   4457520 --attgtgccactgcactccagcctgggcgacagagtgagaccttgtctcaaaaaa------aT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539154 55 - 158406734 agattgcgccattgcactccagcct-ggtgacagagtgaaact--gtctccaaaaa------aa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             371878 49 -   2682657 ---------tactgcactccagcctgggtgacagagtgaaactccgtctccaaaac------aa
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       397834 56 -   2086007 agattctgctaccgcactccagcctgggtgacagagtgaaact--gtctccaaaaa------aa
i cebCap1.NW_016107707v1    C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442107 14 +    563711 I
e canFam3.chr3               60058405  0 -  91889043 C
e aotNan1.NW_018503298v1       458791  0 +   3831555 C
e otoGar3.GL873689             478783  0 +   3845361 C

a score=42973.000000
s hg38.chr15_KI270851v1_alt    209788 8 +    263054 ataaaaaT
s panTro5.chr15               9596912 8 +  83230942 ataaaaaT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74130350 8 -  99763055 ataaaaaT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174590 8 -    281578 aaaaaGAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71036934 8 + 121039945 aaaaaGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164343902 8 - 169600520 AAGTAAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165664862 8 - 171882078 AAGTAAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       519966 8 +   2379783 AAGTAAAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       476420 8 +   4116138 AAGTAAAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53909026 8 +  58131712 AAGTAAAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       529160 8 -   3636681 AAGTAAAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       508744 8 -   4457520 AAGTAAAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539209 8 - 158406734 aaaaaaaa
i calJac3.chr6              C 0 I 4
s saiBol1.JH378292             371927 8 -   2682657 aaaaaaaa
i saiBol1.JH378292          C 0 I 1
s cebCap1.NW_016107707v1       397890 8 -   2086007 aaaaaaaa
i cebCap1.NW_016107707v1    C 0 I 2
s canFam3.chr3               60058405 8 -  91889043 ATGAAGAT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782 7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442107 14 +    563711 I
e aotNan1.NW_018503298v1       458791 0 +   3831555 C
e otoGar3.GL873689             478783 0 +   3845361 C

a score=159733.000000
s hg38.chr15_KI270851v1_alt    209796 16 +    263054 AATGTATTCAACAGTG-
s panTro5.chr15               9596920 16 +  83230942 AATGTATTCAACAGTG-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74130358 16 -  99763055 AATGTATTCAACAGTG-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174598 16 -    281578 AATGTATTCAACAGTG-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71036942 16 + 121039945 AATGTATTCAACAGTG-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164343910 16 - 169600520 AATGTATTCAGCAATG-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165664870 16 - 171882078 AATGTATTCAGCAATG-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       519974 16 +   2379783 AATGTATTCAGCAATG-
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       476428 16 +   4116138 AATGTATTCAGCAATG-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53909034 16 +  58131712 AATGTATTCAGCAATG-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       529168 16 -   3636681 AATGTATTCAGCAATG-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       508752 16 -   4457520 AATGTATTCAGCAATG-
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539221 16 - 158406734 aaTGTATTCAACAATG-
i calJac3.chr6              I 4 C 0
s saiBol1.JH378292             371936 13 -   2682657 ---GTATTCAACAGTG-
i saiBol1.JH378292          I 1 C 0
s cebCap1.NW_016107707v1       397900 16 -   2086007 aaTGTATTCAACAATG-
i cebCap1.NW_016107707v1    I 2 C 0
s aotNan1.NW_018503298v1       458791 16 +   3831555 aaTGCATTCAACAATG-
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60058413 16 -  91889043 -ATGTGTTTAAAACTGC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442107 14 +    563711 I
e otoGar3.GL873689             478783  0 +   3845361 C

a score=326374.000000
s hg38.chr15_KI270851v1_alt    209812 27 +    263054 TCGTTATGGCCTCC-TTTTTGGTATTGT
s panTro5.chr15               9596936 27 +  83230942 TCGTTATGGCCTCC-TTTTTGGTATTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74130374 27 -  99763055 TCGTTATGGCCTCC-TTTTTGGTATTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174614 27 -    281578 TCGTTATGGCCTCC-TTTTTGGTATTGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71036958 27 + 121039945 TCGTTATGTCCTCC-TTTTTGGTATTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164343926 27 - 169600520 TCGTTATGGCCTCC-TTTTTGGTATTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165664886 27 - 171882078 TCGTTATGGCCTCC-TTTTTGGTATTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       519990 27 +   2379783 TCGTTATGGCCTCC-TTTTTGGTATTGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       476444 27 +   4116138 TCGTTATGGCCTCC-TTTTTGGTATTGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53909050 27 +  58131712 TCGTTATGGCCTCC-TTTTCGGTATTGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       529184 27 -   3636681 TCGTTATGGCCTCC-TTTTTGGTATTGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       508768 27 -   4457520 TCGTTATGGCCTCC-TTTTTGGTATTGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539237 28 - 158406734 TTGTTATGGCTTCCTTTTTTGGTATTGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             371949 27 -   2682657 TTGTTATGGCTTCC-TTTTTGGGATTGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       397916 27 -   2086007 TTGTTATGGCTTCC-TTTTTGGTATGGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       458807 27 +   3831555 TTGTTATGACTTCC-TTTTTGGTATTGT
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60058429 27 -  91889043 TCATTATGGCTTCT-TTGTTGGTATTGC
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             442121 27 +    563711 tcattatggcTTTT-CCATTGGCATTGT
i dasNov3.JH562051          I 14 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e otoGar3.GL873689             478783  0 +   3845361 C

a score=963673.000000
s hg38.chr15_KI270851v1_alt    209839 91 +    263054 TTTTGTATTGAAAAACTGTAAAC-ACCAAAATACCCATTCTTATG-TTGTGTATCCGTACAGTGTGATATCATGGTGCCATTCAAAATGATGG
s panTro5.chr15               9596963 91 +  83230942 TTTTGTATTGAAAAACTGTAGAC-ACCAAAATACCCATTCTTATG-TTGTGTATCCGTACAGTGTGATATCATGGTGCCATTCAAAATGATGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74130401 91 -  99763055 TTTTGTATTGAAAAACTGTAGAC-ACCAAAATACCCATTCTTATG-TTGTGTATCCGTACAGTGTGATACTATGGTGCCATTCAAAATGATGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174641 91 -    281578 TTTTGTGGTGAAAAACTGTAGAC-ACCAAAATACCTATTCTTATG-TTGTGTATCCATACAGTGTGATACCATGGTGCCATTCAAAATGATGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71036985 91 + 121039945 TTTTGTGTTTTAAAACTGTAGAC-ACCAAAATACCCATTCTTATG-TTGTGTATCCATACAGTGTGATATCATGGTGCCATTCAAAATGATGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164343953 91 - 169600520 TTTTATGTTGATAAACTGTAGAC-ACCAAAATACCCATTCTTATA-TTGTGTATCCATACAGTGTAATATCTTGGTGCCATTCAAAATGATGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165664913 91 - 171882078 TTTTATGTTGATAAACTGTAGAC-ACCAAAATACCCATTCTTATA-TTGTGTATCCATACAGTGTAATATCTTGGTGCCATTCCAAATGATGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520017 91 +   2379783 TTTTATGTTGATAAACTGTAGAC-ACCAAAATACCCATTCTTATA-TTGTGTATCCATACAGTGTAATATCTTGGTGCCATTCAAAATGATGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       476471 91 +   4116138 TTTTATGTTGATAAACTGTAGAC-ACCAAAATACCTATTCTTATA-TTGTGTATCCATACAGTGTAATATCTTGGTGCCATTCAAAATGATGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53909077 91 +  58131712 TTTTATGTTGATAAACTGTAGAC-ACCAAAATACCCATTCTTATA-TTGTGTATCCATACAGTATAATATCTTGGTGCCATTCAAAATGATGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       529211 91 -   3636681 TTTTATGTTGATAAACTGTAGAC-ACCAAAATACCCATTCTTACA-TTGTGTATCCATACAGTGTAATATCTTGGTGCCATTCAAAATGATGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       508795 91 -   4457520 TTTTATGTTGATAAACTGTAGAC-ACCAAAACACCCATTCTTATA-CTGTGTTTCCCTGCAGTGTAATATCTTGGTGCCATTCAAAATGATGG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539265 89 - 158406734 TTTTGTGTTGAAAAACTATAGAC-ACTGAAATACCCATTCTTTTGTGTCCATATCCATACAGTGTAATAC---GGTATCATTCAAAGTGATGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             371976 83 -   2682657 TTTTGTGTTGAAAAACTGTAAAC-ACCAAAATACCCACTCTGAGG------TATCCATACAGTGTAATAC---AGTGTCATTCAAAATGATGG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       397943 83 -   2086007 TTTTGTGTTGAAAAACTGTAGAC-ACTAAAATACCCACTCTTATG------TATCCGTGCAGTGTAATAC---AGTGTCATTCAAAATGATGG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       458834 83 +   3831555 TTTTGTGTTGAAAAACTGTAGAC-ACCAAAATACCCATTCTTATG------TGTCCATACAGTGTAATAC---GGTGTCATTCAAAATGATGG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             478783 89 +   3845361 TTTTGTGTTGAAAAACTGAAGAT-GCT-AACTGGCCATTATTTT--TGGGATATCCATGCAGAGGAAAACTAGGGTGCCGTTAAGAATGATGG
i otoGar3.GL873689          C 0 I 4342
s canFam3.chr3               60058456 90 -  91889043 TTTTAGGTTGA-AAACTAGGGAC-ACCTAAATGCCCATTATTGGA-TGGTGTATCCACATAGTGGAATACCTTGACACCATTCACAGTGATGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             442148 92 +    563711 TTTTATGTTGAAAATCTGGAGGTGGTCTATATACCCATCATGATA-TGGTATGATCATACAGTAGGCTACCAAGGAGCCATTCAGAATGATAA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I

a score=27543.000000
s hg38.chr15_KI270851v1_alt    209930 3 +    263054 TAC-
s panTro5.chr15               9597054 3 +  83230942 TAC-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74130492 3 -  99763055 TAC-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174732 3 -    281578 TAC-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037076 3 + 121039945 TAC-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344044 3 - 169600520 TAC-
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              165665004 3 - 171882078 TAC-
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011934v1       520108 3 +   2379783 TAC-
i macNem1.NW_012011934v1    C 0 I 1
s cerAty1.NW_012001462v1       476562 3 +   4116138 TAC-
i cerAty1.NW_012001462v1    C 0 I 1
s chlSab2.chr26              53909168 3 +  58131712 TAC-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       529302 3 -   3636681 TAC-
i manLeu1.NW_012102332v1    C 0 I 1
s colAng1.NW_012115278v1       508886 3 -   4457520 TAC-
i colAng1.NW_012115278v1    C 0 I 1
s calJac3.chr6              154539354 3 - 158406734 TAT-
i calJac3.chr6              C 0 I 5
s saiBol1.JH378292             372059 3 -   2682657 TAC-
i saiBol1.JH378292          C 0 I 5
s cebCap1.NW_016107707v1       398026 3 -   2086007 TAC-
i cebCap1.NW_016107707v1    C 0 I 5
s aotNan1.NW_018503298v1       458917 3 +   3831555 TGC-
i aotNan1.NW_018503298v1    C 0 I 5
s canFam3.chr3               60058546 3 -  91889043 TAC-
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             442240 2 +    563711 --CC
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56156782 7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e otoGar3.GL873689             478872 4342 +   3845361 I

a score=8510.000000
s hg38.chr15_KI270851v1_alt    209933 7 +    263054 -ATGTATa
s panTro5.chr15               9597057 7 +  83230942 -GTGTATa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74130495 7 -  99763055 -TTATATa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174735 7 -    281578 -TTATATa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037079 7 + 121039945 -ATATATa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344048 7 - 169600520 -TAATAGa
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              165665008 7 - 171882078 -TAATAGa
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011934v1       520112 7 +   2379783 -TAATAGa
i macNem1.NW_012011934v1    I 1 C 0
s cerAty1.NW_012001462v1       476566 7 +   4116138 -TAATAGA
i cerAty1.NW_012001462v1    I 1 C 0
s manLeu1.NW_012102332v1       529306 7 -   3636681 -TAATAGa
i manLeu1.NW_012102332v1    I 1 C 0
s colAng1.NW_012115278v1       508890 7 -   4457520 -TAATAGa
i colAng1.NW_012115278v1    I 1 C 0
s calJac3.chr6              154539362 7 - 158406734 -TAGAGTa
i calJac3.chr6              I 5 C 0
s saiBol1.JH378292             372067 7 -   2682657 -TAAAGTa
i saiBol1.JH378292          I 5 C 0
s cebCap1.NW_016107707v1       398034 7 -   2086007 -TATAGTa
i cebCap1.NW_016107707v1    I 5 C 0
s aotNan1.NW_018503298v1       458925 7 +   3831555 -TATAGTa
i aotNan1.NW_018503298v1    I 5 C 0
s dasNov3.JH562051             442242 7 +    563711 A-TGTATA
i dasNov3.JH562051          C 0 I 1457
e mm10.chr7                  56156782 7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e canFam3.chr3               60058549 1 -  91889043 I
e otoGar3.GL873689             478872 4342 +   3845361 I
e chlSab2.chr26              53909171 0 +  58131712 C

a score=502111.000000
s hg38.chr15_KI270851v1_alt    209940 59 +    263054 gtcttccctcaatatccatggggatgagttccaagacccccagttataccagaattcac
s panTro5.chr15               9597064 59 +  83230942 gtcttccctcagtatccatggggatgagttccaagacccccagttataccagaattcac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74130502 59 -  99763055 gtcttccctgaatatccatggggatgagttccaagacccccagttataccagaattcac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174742 59 -    281578 gtcttccctgaatatccatggggatgagttccgagacccccagttataccagaattcac
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037086 59 + 121039945 gtcttccctcaatatccatggggatgagttccaagacccccagtcataccagaattcac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344055 59 - 169600520 gtcttccctcagtatccatgtggatgagttcctagacccccagttataccagaattcac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665015 59 - 171882078 gtcttccctcagtatccatgtggatgagttcctagacccccagttataccagaattcac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520119 59 +   2379783 gtcttccctcagtatccatgtggatgagttcctagacccccagttataccagaattcac
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       476573 59 +   4116138 GTCTTCCCTCAGTATCCATGTGGATGAGTTCCTAGACCCCCAGTTATACCAGAATTCAC
i cerAty1.NW_012001462v1    C 0 I 185
s manLeu1.NW_012102332v1       529313 59 -   3636681 gtcttccctcagtatccatgtggatgagttcctagacccccagttataccagaattcac
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       508897 59 -   4457520 gtcttccctcaatatccatgtggataagttcttagacccccagttataccagaattcac
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539369 59 - 158406734 gtcttcactcagtatccatggggatgggctccaagacccccagttctaccagaattcac
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             372074 59 -   2682657 gtcttcactcaatatccatggggatgggttccaagaccctcaattatgccagaattcac
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       398041 58 -   2086007 gtcttcactcagtatccgtggggatgggttccaagacccccaattatacca-attatac
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       458932 59 +   3831555 gtcttcactcagtatccatggggatgggttccaagacctccaattataccagaattcac
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442249 1457 +    563711 I
e canFam3.chr3               60058549  1 -  91889043 I
e otoGar3.GL873689             478872 4342 +   3845361 I
e chlSab2.chr26              53909171  0 +  58131712 C

a score=293027.000000
s hg38.chr15_KI270851v1_alt    209999 41 +    263054 taatgcttaaggcccttctataaaatggtgtagtatttgca
s panTro5.chr15               9597123 41 +  83230942 taatgcttaaggcccttctataaaatggtgtagtatttgca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74130561 41 -  99763055 taatgcttaaggcccttctataaaatggtgtagtatttgca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174801 41 -    281578 taatgcttaaggcccttctataaaatggtgtagtatttgca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037145 41 + 121039945 taatgcttaaggcccttctataaaatggtgtagtatttgca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344114 41 - 169600520 taatgcttaaggcccttctataaaatggtgtagtatacgca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665074 41 - 171882078 taatgcttaaggcccttctataaaatggtgtagtatatgca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520178 41 +   2379783 taatgcttaaggcccttctataaaatggtgtagtatatgca
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       529372 41 -   3636681 taatgcttaaggcctttctataaaatggtgtagtatatgca
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       508956 41 -   4457520 taatgcttaaggcccgtctgcaaaatggtgtggtatatgca
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539428 35 - 158406734 caatgctcaaggcccttctataaaatggtgtagtt------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             372133 35 -   2682657 taatgctcaaggcccttctataaaatggtgtggta------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       398099 41 -   2086007 taatgctcaaggcccttctataaaatggtgtagtatatgca
i cebCap1.NW_016107707v1    C 0 I 78
s aotNan1.NW_018503298v1       458991 41 +   3831555 taatgctcaaggcccttctataaaatggtgtagtgtatgca
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442249 1457 +    563711 I
e canFam3.chr3               60058549  1 -  91889043 I
e otoGar3.GL873689             478872 4342 +   3845361 I
e cerAty1.NW_012001462v1       476632 185 +   4116138 I
e chlSab2.chr26              53909171  0 +  58131712 C

a score=15015.000000
s hg38.chr15_KI270851v1_alt    210040 3 +    263054 tat
s panTro5.chr15               9597164 3 +  83230942 tat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74130602 3 -  99763055 tat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174842 3 -    281578 tat
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037186 3 + 121039945 tat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344155 3 - 169600520 tat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665115 3 - 171882078 tat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520219 3 +   2379783 tat
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       529413 3 -   3636681 tat
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       508997 3 -   4457520 tat
i colAng1.NW_012115278v1    C 0 C 0
s aotNan1.NW_018503298v1       459032 3 +   3831555 tat
i aotNan1.NW_018503298v1    C 0 I 87
e mm10.chr7                  56156782 7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442249 1457 +    563711 I
e canFam3.chr3               60058549 1 -  91889043 I
e otoGar3.GL873689             478872 4342 +   3845361 I
e cebCap1.NW_016107707v1       398140 78 -   2086007 I
e cerAty1.NW_012001462v1       476632 185 +   4116138 I
e chlSab2.chr26              53909171 0 +  58131712 C
e saiBol1.JH378292             372168 0 -   2682657 C
e calJac3.chr6              154539463 0 - 158406734 C

a score=238499.000000
s hg38.chr15_KI270851v1_alt    210043 47 +    263054 aacctatgcacatcctccgaaatactttaaaaatataaatgatatat
s panTro5.chr15               9597167 47 +  83230942 aacctatgcacatcctccaaaatactttaaaAATATAAATGATATAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74130605 47 -  99763055 aacctatgtacatcctccgaaatactttaaaaatataaatgatatat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174845 47 -    281578 aacctatgtacatcctcccaaatactttaaaaatataaatgatatat
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037189 47 + 121039945 aacctatgcacatccttccaaatactttaaaaatataaatgatatat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344158 47 - 169600520 aacctatgcacattctcccaaatactttaaaaatataagtgatatgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665118 47 - 171882078 aaactatgcacattctcccaaatactttaaaaatataagtgatatgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520222 47 +   2379783 aacctatgcacattctcccaaatactttaaaaatataagtgatatgt
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       529416 47 -   3636681 aacctatgcacattctcccaaatactttaaaaatataagtgatatgt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       509000 47 -   4457520 aacctatgcacatcctcccaaatactttaaaaatataaatgatatgt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539463 43 - 158406734 ----tatgcacatcctcccaaatactttaaaAATATAAATCATATAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             372168 40 -   2682657 ----tatgcacatcctcccaaatactttaaaaatacaaatcatt---
i saiBol1.JH378292          C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442249 1457 +    563711 I
e canFam3.chr3               60058549  1 -  91889043 I
e aotNan1.NW_018503298v1       459035 87 +   3831555 I
e otoGar3.GL873689             478872 4342 +   3845361 I
e cebCap1.NW_016107707v1       398140 78 -   2086007 I
e cerAty1.NW_012001462v1       476632 185 +   4116138 I
e chlSab2.chr26              53909171  0 +  58131712 C

a score=1285422.000000
s hg38.chr15_KI270851v1_alt    210090 301 +    263054 aggctgggtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcagatcacgaggtcaggagattgagaccatcctggctaacacggtgaaactccatctctactaaaaatacaaaaaattagctgggcgtggtgacgggtgccagtagtcccagctacttgggaggc-tgaggcaggagaatggcatgaacccaggaggcggagcttgcagtgagccgagatcgtgccactgcactccagcctgggtgac-agagcgagactctgtctcaaaaaaataaataaa-taaa
s panTro5.chr15               9597214 301 +  83230942 Aggctgggtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaactccatctctactaaaaatacaaaaaattagctgggcgtggtgacgggtgccagtagtcccagctacttgggaggc-tgaggcaggagaatggcatgaacccaggaggcggagcttgcagtgagccgagatcgtgccactgcactccagcctgggtgac-acagcgagactctgtctcaaaaaaataaataaa-taaa
i panTro5.chr15             C 0 I 12605
s panPan2.chr15              74130652 297 -  99763055 aggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggctaaggcgggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaactccatctctactaaaaatacaaaaaattagctgggcgtggtggcaggtgcctgtagtcccagctacttgggaggc-tgaggcaggagaatggtgtgaacttgggaggcagagcttgcagtgaggcgagatcgtgtcactgcactccagcctgggtgac-agagcgagactgtgtctcaaaaaaataaataaa-----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       174892 302 -    281578 aggccgggcgcggtggctcatgcctgtaatcccagcgctttgggaggctgaggcgggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaactccatttctactaaaaatacaaaaaattagccgggcgtggtggcaggtgcctgtagtcccagctacttgggaggc-tgaggcaggagagtggtgtgaacttgggaggcagagcttgcagtgaggctagatcctgtcactgcacttcagcctgggtgac-agagcgagactctgtctcaaaaaaaaaaaaaaaataaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037236 296 + 121039945 aggccgggcgcagtggctcacgcctgtaatcccaccactttgggaggctaaggtgggcagatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaactccgtctctactaaaaatacaaaaaattagccaggcgtggtggcgggtgcctgtagtcccagctactcgggaggc-tgaggcaggagaatggtgtgaacccgggatgcagagcttgcagtgagctgagttcgtgccactgcactccagcctgggcgac-agagcgagactctgtctcaaaaata-aaataaa-----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344205 301 - 169600520 aggccgggtgtggtggctcacacctgtaatcccagcactttgggaggctgaggtgggtggatcacaaggtcaggagatcaagaccatcctggctaacacagtgaaactccatccctactgaaaatacaaaaaattagctgggtgtggcggcgggcgcctatagtcccagctactcgggagttttgaggcaggagaatgacctgaacctgggaggcggagcttgcagtgagcagagattgcgccactgcactccagcctgggtgac-agagcgagactctgtctcaataa-ataagtaag-taag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665165 301 - 171882078 aggccgggtgtggtggctcacacctgtaatcccagcactttgggaggctgaggtgggtggatcacaaggtcagcagatcaagaccaccctggctaacacagtgaaactccatccctactgaaaatacaaaaaattagctgggtgtggcggcgggcgcctgtagtcccagctactcgggagtcttgaggcaggagaatgacctgaacctgggaggcggagcttgcagtgagctgagattgtgccactgcactccagcctgggtgac-agagcgagactctgtctcaataa-ataagtaag-taaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520269 301 +   2379783 aggccgggtgtggtggctcacacctgtaatcccagcactttgggaggctgaggtgggtggatcacaaggtcaggagatcaagaccatcctggctaacacagtgaaactccatccctactgaaaatacaaaaaattagctggatgtggcggagggcgcctgtagtcccagctactcgggagtcttgaggcaggagaatgacctgaacctgggaggcggagcttgcagtgagcagagattgcgccactgcactccagcctgggtgac-agagcgagactctgtctcaataa-ataagtaaa-taaa
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       529463 293 -   3636681 aggccgggtgtggtggctcacacctgtaatcccagcactttgggaggctgaggtgggtggatcacaaggtcaggagatcaagaccatcctggctaacacagtgaaactccatccctactgaaaatacaaaaaattagctgggtgtggcggcgggtgcctgtagtcccagctactcgggagtcttgaggcaggagaatgacctgaacctgggaggcggagcttgcagtgagccgagattgcgccactgcactccagcctgggtgac-agagcgagactctgtctcaataa-ataag---------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       509047 301 -   4457520 aagctgggtgcagtggctcacacctgtaatcccagcactttgggaggccaaggtgggtggatcacgaggtcaggagatcaagaccatcctggctaacacagtgaaactccatccctactaaaaatagaaaaaattagctgggtgtggcggcgggcgcctgtagtcccagctactcgggagtcttgaggcaggagaatgacatgaacctgggaggcggagcttacagggagccaagattgcaccactgcactccagcctgggtgac-agagtgagactctgtctcaataa-ataagtaaa-taaa
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             372208 300 -   2682657 --gccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcgagagatcgagaccatcctggtcaacatggtgaaaccctgtctctactcaaaatacaaaaaattagctgggcatggtggcacgtgcctgtaatcccagctactcaggaggc-tgaggcaggagaattgcctgaacccaggaggcggaggttgcggtgagccgagatcgcgccattgcactccagcctgggtaacaagagcgaaactccgtctcaaaaaaaaaaaaaaa-aaaa
i saiBol1.JH378292          C 0 C 0
e mm10.chr7                  56156782   7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442249 1457 +    563711 I
e canFam3.chr3               60058549   1 -  91889043 I
e aotNan1.NW_018503298v1       459035  87 +   3831555 I
e otoGar3.GL873689             478872 4342 +   3845361 I
e cebCap1.NW_016107707v1       398140  78 -   2086007 I
e cerAty1.NW_012001462v1       476632 185 +   4116138 I
e chlSab2.chr26              53909171   0 +  58131712 C
e calJac3.chr6              154539506   0 - 158406734 C

a score=45160.000000
s hg38.chr15_KI270851v1_alt    210391 28 +    263054 ----------taaaaataaaataaaataaatgatatgt
s panPan2.chr15              74130949 28 -  99763055 ----------taaaaataaaataaaataaatgatatgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       175194 28 -    281578 ----------caaaaatgaaataaaataaatgatatgt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037532 28 + 121039945 ----------ataaaataaataaatataaatgatatgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344506 25 - 169600520 ------------taaataaataaata-aaatgacatgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665466 25 - 171882078 ------------taaataaataaata-aaAtgatatgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520570 25 +   2379783 ------------taaataaataaata-aaatgatatgt
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       529756 25 -   3636681 ------------taaataaataaata-aaatgatatgt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       509348 22 -   4457520 ------------taaataaata---a-aaatgatatat
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             372508 38 -   2682657 aaaaaaaaaaaaaaaaaaaaaaaatacaaatcatttgt
i saiBol1.JH378292          C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442249 1457 +    563711 I
e canFam3.chr3               60058549  1 -  91889043 I
e aotNan1.NW_018503298v1       459035 87 +   3831555 I
e otoGar3.GL873689             478872 4342 +   3845361 I
e cebCap1.NW_016107707v1       398140 78 -   2086007 I
e panTro5.chr15               9597515 12605 +  83230942 I
e cerAty1.NW_012001462v1       476632 185 +   4116138 I
e chlSab2.chr26              53909171  0 +  58131712 C
e calJac3.chr6              154539506  0 - 158406734 C

a score=140159.000000
s hg38.chr15_KI270851v1_alt    210419 49 +    263054 aaatagttgttattgctattctttttaaaa---ttatattttaaaaaattgt
s panPan2.chr15              74130977 49 -  99763055 aaatagttgttattgctattctttttaaaa---ttatattttaaaaatttgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       175222 49 -    281578 aaatagttgttattgctattctttttaaaa---ttatattttaaaaaattgt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037560 48 + 121039945 aaatagttgtcattgctatttttttttaaa---ttgtattttaaaaa-ttgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344531 50 - 169600520 aaatagttgttaa--ctatttttttaaaaaaatttgtatttttaagaattgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665491 49 - 171882078 aaatagttgttaa--ctatttttt-aaaaaaatttgtatttttaagaattgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520595 50 +   2379783 aaatagttgttaa--ctattttttaaaaaaaatttgtatttttaagaattgt
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       529781 50 -   3636681 aaatagttgttaa--ctatttttttaaaaaaatttgtatttttaagaattgt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       509370 52 -   4457520 aaatagttgttaacgctattttttaaaaaaaatttgtatttttaaaaattgt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539506 46 - 158406734 AAATAGTTGTTATC-CTGTACTTTTTAT-----TTGTATTTTCAAGATTCGT
i calJac3.chr6              C 0 I 8
s saiBol1.JH378292             372546 46 -   2682657 aaatagttgttatt-ctgtactttttat-----ttgtatttttaagatttgt
i saiBol1.JH378292          C 0 I 8
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442249 1457 +    563711 I
e canFam3.chr3               60058549  1 -  91889043 I
e aotNan1.NW_018503298v1       459035 87 +   3831555 I
e otoGar3.GL873689             478872 4342 +   3845361 I
e cebCap1.NW_016107707v1       398140 78 -   2086007 I
e panTro5.chr15               9597515 12605 +  83230942 I
e cerAty1.NW_012001462v1       476632 185 +   4116138 I
e chlSab2.chr26              53909171  0 +  58131712 C

a score=131080.000000
s hg38.chr15_KI270851v1_alt    210468 23 +    263054 ttta-----ttctgaatatttttgatgt
s panPan2.chr15              74131026 23 -  99763055 ttta-----ttctgaatatttttgatgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       175271 23 -    281578 ttta-----ttctgaatatttttgatgt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037608 23 + 121039945 ttta-----ttctgaatatttttgattt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344581 28 - 169600520 tttacttatttctgaatatttttgatct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665540 28 - 171882078 tttacttatttctgaatatttttgatct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520645 28 +   2379783 tttacttatttctgaatatttttgatct
i macNem1.NW_012011934v1    C 0 C 0
s manLeu1.NW_012102332v1       529831 28 -   3636681 tttacttatttctgaatatttttgatct
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       509422 28 -   4457520 ttgacttatttctgaatatttttgatct
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539560 23 - 158406734 TCTA-----ttctgagtatttttgatct
i calJac3.chr6              I 8 C 0
s saiBol1.JH378292             372600 23 -   2682657 ttta-----ttctgagtatttttgatct
i saiBol1.JH378292          I 8 C 0
s cebCap1.NW_016107707v1       398218 23 -   2086007 ttta-----ttctgagtatttttgatct
i cebCap1.NW_016107707v1    I 78 C 0
s aotNan1.NW_018503298v1       459122 23 +   3831555 ttta-----ttctgagtatttttggtct
i aotNan1.NW_018503298v1    I 87 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442249 1457 +    563711 I
e canFam3.chr3               60058549  1 -  91889043 I
e otoGar3.GL873689             478872 4342 +   3845361 I
e panTro5.chr15               9597515 12605 +  83230942 I
e cerAty1.NW_012001462v1       476632 185 +   4116138 I
e chlSab2.chr26              53909171  0 +  58131712 C

a score=9100.000000
s hg38.chr15_KI270851v1_alt    210491 1 +    263054 g
s panPan2.chr15              74131049 1 -  99763055 g
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       175294 1 -    281578 g
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037631 1 + 121039945 g
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344609 1 - 169600520 g
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665568 1 - 171882078 g
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520673 1 +   2379783 g
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       476817 1 +   4116138 G
i cerAty1.NW_012001462v1    I 185 C 0
s manLeu1.NW_012102332v1       529859 1 -   3636681 g
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       509450 1 -   4457520 g
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539583 1 - 158406734 g
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             372623 1 -   2682657 g
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       398241 1 -   2086007 g
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       459145 1 +   3831555 g
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56156782 7 + 145441459 I
e proCoq1.NW_012148396v1     13529824 945 +  16154928 I
e dasNov3.JH562051             442249 1457 +    563711 I
e canFam3.chr3               60058549 1 -  91889043 I
e otoGar3.GL873689             478872 4342 +   3845361 I
e panTro5.chr15               9597515 12605 +  83230942 I
e chlSab2.chr26              53909171 0 +  58131712 C

a score=16905.000000
s hg38.chr15_KI270851v1_alt    210492 2 +    263054 tg
s panPan2.chr15              74131050 2 -  99763055 tg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       175295 2 -    281578 tg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037632 2 + 121039945 tg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344610 2 - 169600520 tg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665569 2 - 171882078 tg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520674 2 +   2379783 tg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       476818 2 +   4116138 TG
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       529860 2 -   3636681 tg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       509451 2 -   4457520 tg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539584 2 - 158406734 tg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             372624 2 -   2682657 tg
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       398242 2 -   2086007 tc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       459146 2 +   3831555 tg
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13530769 2 +  16154928 tg
i proCoq1.NW_012148396v1    I 945 C 0
e mm10.chr7                  56156782 7 + 145441459 I
e dasNov3.JH562051             442249 1457 +    563711 I
e canFam3.chr3               60058549 1 -  91889043 I
e otoGar3.GL873689             478872 4342 +   3845361 I
e panTro5.chr15               9597515 12605 +  83230942 I
e chlSab2.chr26              53909171 0 +  58131712 C

a score=420112.000000
s hg38.chr15_KI270851v1_alt    210494 47 +    263054 gtttgttgaatctttggatgcagaacccatggatacggagggctagc
s panPan2.chr15              74131052 47 -  99763055 gtttgttgaatctttggatgcagaacccatggatatggagggctagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       175297 47 -    281578 gtttgttgaatctttggatgcagaacccatggatacggagggctagc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037634 47 + 121039945 gtttgttgaatctttggatgcagaacccatggatacggagggctagc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344612 47 - 169600520 gtttgttgaatctttggatgaagaacccatggctattgagggctagc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665571 47 - 171882078 gtttgttgaatctttggatgaagaacccatggctattgagggctagc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520676 47 +   2379783 gtttgttgaatctttggatgaagaacccatggctattgagggctagc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       476820 47 +   4116138 GTTTGTTGAATCTTTGGATGAAGAACCCATGGCTATTGAGGGCTAGC
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       529862 47 -   3636681 gtttgttgaatctttggatgaagaacccatggctattgagggctagc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       509453 47 -   4457520 gtttgttgaatctttggatgaagaacccatggctactgagggctagc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539586 47 - 158406734 gtttgttgaatctttggatgcagaacccatggatactgagggccAGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             372626 47 -   2682657 gtttgttgaatctttggatgcagaaccgatggatacagagggccAGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       398244 46 -   2086007 atttgttgaatctttggat-cagaacccatggatactgagggccAGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       459148 47 +   3831555 gtttgttggctctttggatgcagaacccatggatactgagggccaac
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13530771 47 +  16154928 gttggttgaatctgtagatgcagaacccatgcatatggagggccaat
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             483214 47 +   3845361 GTATCTTTAATCTGTGGATGTAGAACCTGTGGATGTGGTGGGCCAAC
i otoGar3.GL873689          I 4342 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e dasNov3.JH562051             442249 1457 +    563711 I
e canFam3.chr3               60058549  1 -  91889043 I
e panTro5.chr15               9597515 12605 +  83230942 I
e chlSab2.chr26              53909171  0 +  58131712 C

a score=382598.000000
s hg38.chr15_KI270851v1_alt    210541 44 +    263054 tgTATATGTTTATTGCTGTGGAAACATGAAAACA----ATAAGTGAAC
s panPan2.chr15              74131099 44 -  99763055 tgTATATGTTTATTGCCGTGGAAATATGAAAACG----ATAAGTAAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       175344 44 -    281578 tgTATATGTTTATTGCCGTGGAAACATGAAAACG----ATAAGTAAAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037681 44 + 121039945 tgTATGTGTTTATTGCCATGGAAACATGAAAATG----ATAAGTAAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344659 44 - 169600520 tgTATATGTTTAGTGCCATGGAAACATGAAAATG----ATAAGTAAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665618 44 - 171882078 tgTATATGTTTAGTGCCATGGAAACATGAAAATG----ATAAGTAAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520723 44 +   2379783 tgTATATGTTTAGTGCCATGGAAACATGAAAATG----ATAAGTAAAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       476867 44 +   4116138 TGTATATGTTTAGTGCCATGGAAACATGAAAATG----ATAAGTAAAC
i cerAty1.NW_012001462v1    C 0 C 0
s manLeu1.NW_012102332v1       529909 43 -   3636681 tgTATATGTTTAGTGCCATGGAAACATGAAAATG----ATAAGTAAC-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       509500 44 -   4457520 tgTATATGTTTAGTGCCATGGAAACATGAAAATG----ATAAGTAAAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539633 48 - 158406734 GCTTTATGTTTATTGCCATGAAAATGTGAAAATGGCACATAAGTAAAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             372673 47 -   2682657 G-TATATGTTTATTGCCATGAAAACGTGAAAGTGGTACCTAAGTAAAC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       398290 47 -   2086007 G-TATATGTTTATTGCCATGAAAACGTGAAAATGGTACCTAAGGAAAC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       459195 48 +   3831555 tATATATGTTTATTGCCATGAAAACGTGAAAGTGGTACATAAGTGAAC
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13530818 44 +  16154928 tgtatatgtttattgccatggaaacatggaaatg----ataagtaaac
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             483261 44 +   3845361 TGTGTATGTTTATTGCCACGGAGACATGAAAATG----ATGTGTAGAC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60058550 41 -  91889043 TATATATGTTCATTGCCATGGAAACATGAACATG----ATAAAAT---
i canFam3.chr3              I 1 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e dasNov3.JH562051             442249 1457 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I
e chlSab2.chr26              53909171  0 +  58131712 C

a score=958890.000000
s hg38.chr15_KI270851v1_alt    210585  98 +    263054 AGAAAAGCACACTGCTATGTATATCCGTTT-ATAGATATGCCATAG-TT-ATCTGTTTAGCAAAACAGTGACCCAGTAATCTTtggtggaattttggctgt
s panPan2.chr15              74131143  98 -  99763055 AGAAAAGCACATTGCTATGTATATCCGTTT-ATAGATATGCCATAG-TT-ATCCGTTTAGTGAAATAGTGACCCAGTAATCTTTGGTGGAATTTTGGCTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       175388  97 -    281578 AGAAAAGCACATTGCTATGTATATCCGTTT-ATAGATATGCCATAG-TT-ATCTGTTTAGTGAAATAGTGACCCAGTAATCTTTGGTAGAA-TTTGGCTGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037725  98 + 121039945 AGAAAAGCACATTGCTATGTATATCCGTTT-ATAGATATGCCATAG-TG-ATCTGTTTAGCGAAATAGTGACCCAGTAATCTTtggtggaattttggctgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344703  98 - 169600520 AGAAAAGCACATTGCTATGTGTATCCGTTT-ATAGATATGCCATAG-TTCATCTGTTTAGCAAAATAGTGACACAGTAATCTTtggtggaa-tttagctgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665662  98 - 171882078 AGAAAAGCACATTGCTATGTGTATCCATTT-ATAGATATGCCATAG-TTCATCTGTTTAGcaaaatagtgacacagtaatctttggtggaa-tttagctgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520767  98 +   2379783 AGAAAAGCACATTGCTATGTGTATCCGTTT-ATAGATATGCCATAG-TTCATCTGTTTAGCAAAATAGTGACACAGTAATCTTTGGTGGAA-TTTAGCTGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       476911  99 +   4116138 AGAAAAGCACATTGCTATGTGTATCCATTT-ATAGATATGCCATAG-TTCATCTGTTTAGCAAAATAGTGACACAGTAATCTTTGGTGGAATTTTGGCTGt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53909171  99 +  58131712 AGAAAAGCACATTGCTATGTGTATCCGTTT-ATAGATATGCCATAG-TTCATCTGTTTAGCAAAATAGTGATACAGTAATCTTTGGTGGAATTTTGGCTGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       529952  99 -   3636681 AGAAAAGCACATTGCTATGTGTATCCGTTT-ATAGATATGCCATAG-TTCATCTGTTTAGcaaaatagtgacacagtaatctctggtggaattttggctgt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       509544  99 -   4457520 AGAAAAGCACGTTGCTATGTGTATCCATTT-ATAGATATGCCATAG-TTCATCTGTTCAGCAAAATAGTGACACAGTAATCTTtggtggaattttggctgt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539681 101 - 158406734 AGAAAAGCACATTGCTACATATATTGGTTTAATAGATAAGCCATAGATTCATCTGTGTAGAGCaatattgacacagtaatctttgatggaattttggctgt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             372720  98 -   2682657 --AAAAGCACATTGCTACATGTATCTGTTT-ATAGATAAGTCATAGGTTCATCTGTATAGTGCAATATTGACACGGTAATATTtgatggaattttggctgt
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       398337  98 -   2086007 --AAAAGCACATTGCTACATATATCTGTTT-ATAGATAAGCCATAGGTTCATCTGTGTAGCGCaatattgacacagtaatctttgatggaattttggctgt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       459243 100 +   3831555 AGAAAAGCACATTGCTACACATATCCGTTT-ATAGATAAGCCATAGATTCATCTGTGTAGCGCAATATTGACACAGTAATCTTTGATGGAATTTTGGCTGT
i aotNan1.NW_018503298v1    C 0 I 150
s proCoq1.NW_012148396v1     13530862  95 +  16154928 ---aaaacacattgcTGTGTTTTTCTGTTT-ATAGACATGCCATAGGTTCATCTGTTTAGCAAAATAGTGA--TAGTAATCTTtggtagaatttgggccga
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             483305  98 +   3845361 AAAAAAACACAGTGCCCTGTTGATCTGTTT-ATAGACATGCCGTGGGTTCATCTGTTTAGCAAAGTAGTGA--CAGTAATCTTtggtggaatttaggctga
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60058591  68 -  91889043 AAAAAAGCACATTGCTTTGTATATCTCTTT-GTAGATATACCATAGATTCCCCCTTT---------------------ATTTTCAGCTGA-----------
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782   7 + 145441459 I
e dasNov3.JH562051             442249 1457 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=38391.000000
s hg38.chr15_KI270851v1_alt    210683 4 +    263054 cttt
s panPan2.chr15              74131241 4 -  99763055 CTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       175485 4 -    281578 CTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037823 4 + 121039945 cttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344801 4 - 169600520 cttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665760 4 - 171882078 cttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520865 4 +   2379783 CTTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       477010 4 +   4116138 cttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53909270 4 +  58131712 CTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       530051 4 -   3636681 cttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       509643 4 -   4457520 cttt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539782 3 - 158406734 -ttt
i calJac3.chr6              C 0 I 1
s saiBol1.JH378292             372818 3 -   2682657 -ttt
i saiBol1.JH378292          C 0 I 1
s cebCap1.NW_016107707v1       398435 3 -   2086007 -ttt
i cebCap1.NW_016107707v1    C 0 I 1
s proCoq1.NW_012148396v1     13530957 4 +  16154928 tatt
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             483403 4 +   3845361 tttt
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60058659 4 -  91889043 CTTT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782 7 + 145441459 I
e dasNov3.JH562051             442249 1457 +    563711 I
e aotNan1.NW_018503298v1       459343 150 +   3831555 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=475121.000000
s hg38.chr15_KI270851v1_alt    210687 40 +    263054 attttctttatatttctctatatt----tagttttctagaatga
s panPan2.chr15              74131245 39 -  99763055 A-TTTCTTTATATTTCTCTATATT----TAGTTTTCTAGAATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       175489 40 -    281578 ATTTTCTTTATATTTGTCTATATT----TAGTTTTCTAGAATGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037827 40 + 121039945 attttctttatatttctctatatt----tagttttctagaatga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344805 40 - 169600520 attttctttatatttctctatatt----tagttttctagaatga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665764 40 - 171882078 attttctttatatttctctatatt----tagttttctagaatga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520869 40 +   2379783 GTTTTCTTTATATTTCTCTATATT----TAGTTTTCTAGAATGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       477014 34 +   4116138 attttctttatatttctc----------tagttttctagaatga
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53909274 40 +  58131712 ATTTTCTTTATATTTCTCTATATT----TAGTTTTCTCGAATGA
i chlSab2.chr26             C 0 I 318
s manLeu1.NW_012102332v1       530055 40 -   3636681 attttctttatatttctctatatt----tagttttctagaatga
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       509647 40 -   4457520 attttctttatatttctctatatt----tagttttctagaatga
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539786 40 - 158406734 attttctttatatttctctatatt----tagttttctgtaatga
i calJac3.chr6              I 1 C 0
s saiBol1.JH378292             372822 40 -   2682657 attttctttatatttctctatgtt----tagttttctggaatga
i saiBol1.JH378292          I 1 C 0
s cebCap1.NW_016107707v1       398439 40 -   2086007 attttctttatatttctctatatt----tagttttctggaatga
i cebCap1.NW_016107707v1    I 1 C 0
s aotNan1.NW_018503298v1       459493 40 +   3831555 Attttctttgtatttctctatatt----tagttttctggaatga
i aotNan1.NW_018503298v1    I 150 C 0
s proCoq1.NW_012148396v1     13530961 40 +  16154928 attttctttatacttctctatatt----cagttttctagaatga
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             483407 40 +   3845361 attttctttgtgcttctctatatt----cgtttttctagaatga
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60058663 43 -  91889043 ATTTTC-TTATACTTCTCTATATTATTCCAGTTTTCTAGAATAA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e dasNov3.JH562051             442249 1457 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=5780.000000
s hg38.chr15_KI270851v1_alt    210727 1 +    263054 -g
s panPan2.chr15              74131284 1 -  99763055 -G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       175529 1 -    281578 -G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037867 1 + 121039945 -g
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344845 1 - 169600520 -g
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665804 1 - 171882078 -g
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520909 1 +   2379783 -G
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       477048 1 +   4116138 -g
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53909632 1 +  58131712 -G
i chlSab2.chr26             I 318 C 0
s manLeu1.NW_012102332v1       530095 1 -   3636681 -g
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       509687 1 -   4457520 -g
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154539826 1 - 158406734 -g
i calJac3.chr6              C 0 I 315
s saiBol1.JH378292             372862 1 -   2682657 -g
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       398479 1 -   2086007 -g
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       459533 1 +   3831555 -g
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13531001 1 +  16154928 -g
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             483447 1 +   3845361 -g
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60058706 1 -  91889043 C-
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782 7 + 145441459 I
e dasNov3.JH562051             442249 1457 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=1381125.000000
s hg38.chr15_KI270851v1_alt    210728 146 +    263054 cttgtgttacttttaatag-----------aaa-a-----------aaaCAT-TTTTTGATCTCCAACTATTGAAAGACATTATGCT-AAGTCTTTTGCGGA-----GAAGTCCTTTTCTATGATCATTGCTCTCTAGGGTTTGGATGAGGAGAGGAAGTGAATGCAGATGGCTCT
s panPan2.chr15              74131285 145 -  99763055 CTTGTGTCACTTTTAATAG------------AA-A-----------AAACAT-TTTTTGATCTCCTGCTATTGAAAGACATTATGCT-AAGTCTTTTGCGGA-----GAAGTCCTTTTCTATGATCATTGCTCTCTAGGGTTTGGATGAGGAGAGGAAGTGAATGCAGATGGCTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       175530 146 -    281578 CTTGTGTCACTTTTAATAG----------AAAA-A-----------AAACAT-TTTTTGATCTCCTGCTATTGAAAGACATTATGCT-AAGTCTTTTCGGGG-----AAAGTCCTTTTCTGTGATCACTGCTCTCT-GGGTTTGGATGAGGAGAGGAAGTGAATGCAGATGGCTCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71037868 147 + 121039945 cttgtgtcacttttaatgg----------aaaa-a-----------aaCCAT-TTTTTGATCTCCTACTATTGAAAGACATTATGCT-AAGTCTTTTGGGGG-----AAAGTCCTTTTCTATGATCATTGCTCTCTAGGGTTTGGATGAGGAGAGGAAGTGAATGCAGATGGCTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344846 150 - 169600520 cttgtgtcacttttaatag-aaa------aaaa-C-----------AAACGT-TTTTTGATCACCTACTATTGAAAGACATTATGCT-AAGTGTTTTGGGGA-----GAAGTTCTTTTCTGTGATCATTGCTCTCTGGAGTTTGGATGAGGAGAGGAAGCGAATGCAGATAGCTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665805 150 - 171882078 cttgtgtcacttttaatag-aaa------aaaa-C-----------AAACGT-TTTTTGATCACCTACTATTGAAAGACATTATGCT-AAGTGTTTTGGGGA-----GAAGTTCTTTTCTGTGATCATTGCTCTCTGGAGTTTGGATGAGGAGAGGAAGCGAATGCAGATAGCTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       520910 150 +   2379783 CTTGTGTCACTTTTAATAG-AAA------AAaa-c-----------aaacgt-tttttgatcacctactattgaaagacattatgct-aagtgttttggggA-----GAAGTTCTTTTCTGTGATCATTGCTCTCTGGAGTTTGGATGAGGAGAGGAAGCGAATGCAGATAGCTCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       477049 150 +   4116138 cttgtgtcacttttaatag-aaa------aaaa-C-----------AAACGT-TTTTTGATCACCTACTATTGAAAGACATTATGCT-AAGTGTTTTGGGGA-----GAAGTTCTTTTCTGTGATCATTGCTCTCTGGAGTTTGGATGAGGAGAGGAAGCGAATGCAGATAGCTCT
i cerAty1.NW_012001462v1    C 0 I 2211
s chlSab2.chr26              53909633 150 +  58131712 CTTGTGTCACTTTTAATAG-AAA------AAAA-C-----------AAACGT-TTTTTGATCACCTACTATTGAAAGACATTATGCT-AAGTGTTTTGGGGG-----GAAGTTCTTTTCTGTGATCATTGCTCTCTGGAGTTTGGATGAGGAGAGGAAGTGAATGCAGATAGCTCT
i chlSab2.chr26             C 0 I 356
s manLeu1.NW_012102332v1       530096 150 -   3636681 cttgtgtcacttttaatag-aaa------aaaa-C-----------AAACGT-TTTTTGATCACCTACTATTGAAAGACATTATGCT-AAGTGTTTTGGGGG-----GAAGTTCTTTTCTGTGATCATTGCTCTCTGGAGTTTGGATGAGGAGAGGAAGCGAATGCAGGTAGCTCT
i manLeu1.NW_012102332v1    C 0 I 1402
s colAng1.NW_012115278v1       509688 151 -   4457520 cttgtgtcacttttaatagaaaa------aaaa-c-----------aaacat-tttttGATCACCTACTATTGAAAGACATTATGCT-AAGTGTTTTGGGGA-----GAAGTTCTTTTCTGTGATTATTGCTCTCTGGAGTTTGGATGAGGAGAGGAAGCAAATGCAGATGGCTCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154540142 145 - 158406734 cttgtgtcacttttaatag-aaa------aaaa-C-----------AAATAT-TTTTTCATCACCTACTCTTGAAAGAC---ATGCT-AAGTCTTTTG-GGG-----GATGTTCTTGTCTATGATCATTGCTCTCTAGGGTTTGGACGAGGTGAGGAAATGAACGCAG-TGGCTCT
i calJac3.chr6              I 315 C 0
s saiBol1.JH378292             372863 146 -   2682657 catgtgtcacttttaatag-aaa------aaaaCC-----------AAATAT-TTTTCCATCACCTATTCTTG-AAGAC---ATGCT-AAGTCTTTTGAGGG-----GAAGTTCTTGTCTATGATCATTGCTCTCCAGGGTTTGGATGAGGCGAGGAAATGAACGCAG-TGGCTCT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       398480 146 -   2086007 cttgtgtcacttttaatag-aaa------aaaa-C-----------AAATAT-TTTTCCATCACCTATTCTTGAAAGAC---ATGCA-AAGTCTTTTGGGGG-----GAAGCTCTTGTCTATGATCATTGCTCTCTAGGGTGTGGATGAGGTGAGGAAATGAACGCAG-TGGCTCC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       459534 149 +   3831555 cttgtgtcacttttaatag-aaa------aaaG-C-----------AAATAT-TTTTCCATCACCTGCTCTTGAAAGACATTATGCT-AAGTCTTTTGTGGG-----GAAGTTCTTGTCTATGATCAATGCTCTCTAGGGTTCGGATGAGGTGAGGAAATGAACGCAG-TGGCTCT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13531002 162 +  16154928 ctcatatcacttttgatag-gagaaaaccaaag-c-------tatgaaatgt-tttttGATCATctgtt---gaaagacattgtgct-aagtactatgggggaaaagatagtcattgttcatgatcattattttctaggTTTGGGAGGAGGAGAGAAAATGAATGCAGATGGCTCT
i proCoq1.NW_012148396v1    C 0 I 259
s otoGar3.GL873689             483448 158 +   3845361 ctcatactacttctaacaa-taa------aAAG-C-------TACAAACTGA-TTTTTGATTAGCTACTATAAAAAGACATGGTGCT-ATGTGTTATGGGTG-AAAGGTAGTCATTGTTTATGATGATTATTTTCTGGGTTTGAAATGGGGAGAGAAAATGAATGCTGGTGGCTCA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60058707 165 -  91889043 CTTATATCATTTTAAGTAG-GAAC-----AAAA-CCCCAAATTATGAAATATGTTTTTGATTATCTACTATTAAAGGAC---ATGCTAAAGTATTATGGGGA-ACAGGATAATCTACTTATGGTTCCAAACTCTGTGGGGTCAGAGTGAGAAGAGGAAATGAATGCAGATGGCTCT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782   7 + 145441459 I
e dasNov3.JH562051             442249 1457 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=39907.000000
s hg38.chr15_KI270851v1_alt    210874 16 +    263054 CTTTGTTCTCTGGGGC
s panPan2.chr15              74131430 16 -  99763055 CTTTGTCCTCTGGGGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       175676 16 -    281578 CTTTGTCCTCTGGGGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71038015 16 + 121039945 CTCTGTCCTCTGGGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164344996 15 - 169600520 GTCTGTCCGCGGGGC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165665955 15 - 171882078 GTCTGTCCGCGGGGC-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       521060 15 +   2379783 GTCTGTCCGCGGGGC-
i macNem1.NW_012011934v1    C 0 C 0
s colAng1.NW_012115278v1       509839 15 -   4457520 GTCTGTCCGCAGGGC-
i colAng1.NW_012115278v1    C 0 I 99
s calJac3.chr6              154540287 16 - 158406734 GTCTGTCCTCTGGGAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             373009 16 -   2682657 GTCCGTCGTCTGGGGC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       398626 16 -   2086007 GTCCGTCCTCTGGGGC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       459683 16 +   3831555 GTCCATCCTCTGGGGC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             483606 12 +   3845361 ----GTCCTGTGGGGC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60058872 16 -  91889043 GTGCAGGGTATGATGC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13531164 259 +  16154928 I
e dasNov3.JH562051             442249 1457 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I
e manLeu1.NW_012102332v1       530246 1402 -   3636681 I
e cerAty1.NW_012001462v1       477199 2211 +   4116138 I
e chlSab2.chr26              53909783 356 +  58131712 I

a score=3384.000000
s hg38.chr15_KI270851v1_alt    210890 2 +    263054 C-A
s panPan2.chr15              74131446 2 -  99763055 C-A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       175692 2 -    281578 C-A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71038031 2 + 121039945 C-A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164345011 2 - 169600520 C-G
i rheMac8.chr7              C 0 I 1630
s macFas5.chr7              165665970 2 - 171882078 C-G
i macFas5.chr7              C 0 I 1945
s macNem1.NW_012011934v1       521075 2 +   2379783 C-C
i macNem1.NW_012011934v1    C 0 I 46
s calJac3.chr6              154540303 2 - 158406734 C-A
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             373025 3 -   2682657 CGG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       398642 2 -   2086007 C-G
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       459699 2 +   3831555 C-A
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             483618 2 +   3845361 C-A
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60058888 2 -  91889043 C-A
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782 7 + 145441459 I
e proCoq1.NW_012148396v1     13531164 259 +  16154928 I
e dasNov3.JH562051             442249 1457 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I
e colAng1.NW_012115278v1       509854 99 -   4457520 I
e manLeu1.NW_012102332v1       530246 1402 -   3636681 I
e cerAty1.NW_012001462v1       477199 2211 +   4116138 I
e chlSab2.chr26              53909783 356 +  58131712 I

a score=7800.000000
s hg38.chr15_KI270851v1_alt    210892 1 +    263054 G
s panPan2.chr15              74131448 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       175694 1 -    281578 G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71038033 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s cerAty1.NW_012001462v1       479410 1 +   4116138 G
i cerAty1.NW_012001462v1    I 2211 C 0
s chlSab2.chr26              53910139 1 +  58131712 G
i chlSab2.chr26             I 356 C 0
s manLeu1.NW_012102332v1       531648 1 -   3636681 G
i manLeu1.NW_012102332v1    I 1402 C 0
s calJac3.chr6              154540305 1 - 158406734 G
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             373028 1 -   2682657 G
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       398644 1 -   2086007 G
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       459701 1 +   3831555 G
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             483620 1 +   3845361 G
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60058890 1 -  91889043 G
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782 7 + 145441459 I
e proCoq1.NW_012148396v1     13531164 259 +  16154928 I
e dasNov3.JH562051             442249 1457 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I
e colAng1.NW_012115278v1       509854 99 -   4457520 I
e macNem1.NW_012011934v1       521077 46 +   2379783 I
e rheMac8.chr7              164345013 1630 - 169600520 I
e macFas5.chr7              165665972 1945 - 171882078 I

a score=1923348.000000
s hg38.chr15_KI270851v1_alt    210893 234 +    263054 GGGG---------------------------------------------------CGGTGAGGCATGTGAGTG--GTTCCACAGGCGTC-TGGAGCCAGTGGCAGCTGAGCACTGGACGG-GCAGCCTTTGAAGGCTG-TGGCAGAC---AGATGCCAGCAGACAAGCA----CTCTGCTGGTGGTGGAGGCAGGAGGAG-AGGAGTGAACGTGGTGAGTCTTTGGAAGCACGTTGAGCAGCTCTCCTCTTCTTGGAGCTCAGGGTTTTTCGATGAGTGGTGGGGCTGAAGCTAGATG
s panPan2.chr15              74131449 233 -  99763055 GAGG---------------------------------------------------CAGTGAGGCATGTGAGTG--GTTCCACAGGCATC-TGGAGCCAGTGTCAGCTGAGCACTGGACAG-GCAGCCTTTGAAGGCTG-TGGCAGAC---AGATGCCAGCAGACAAGCA----CTTTGCTGGTGGTGGA-CCAGGAGGAG-AGGAGTGAAAGTGGTGAGTCTTTGGAAGCGTGTTGAGCAGCTCTGCATTGCTTGGAGCTCAGGGTTTGTCGATGAGTGGTGGGGCTGAAGCTGGATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       175695 224 -    281578 GAGG---------------------------------------------------CGGTGAGGCATGTGAGTG--GTTCCACAGGCATC-TGGAGCCAGTGGCAGCTGAGCACTGGACAG-GCAGCCTT----------TGGCAGAC---AGATGCCAGCAGACAAGCA----CTCTGCTGGTGGTGGA-CCAGGAGGAG-AGGAGTGAAAGTGGCAAGTCTTTGGAAGCGTGTTGAGCAGCTCTGCATTGCTTGGAGCTCAGGGTTTGTCGATGAGTGGTGGGGCTGAAGCTGGATG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71038034 233 + 121039945 GGGG---------------------------------------------------CGGTGAGGCGTGTGAGTG--GTTCCCCAGGCGTC-TGGAGCCAGTGGCAGCTGAGCACTGGACGG-GCAGCCTTTGAAGGCTG-TGGCAGAC---AGATGCCAGCAGACAAGCA----CTCTGCTGGTGGTGGA-CCAGGAGGAG-AGGAGTGAAAGTGGCGAGTCTTTGGAAGCGTGTTGAGCAGCTCTGCGTTGCTTGGAGCTCAGGGTTTGTCGATGAGTGGTGGGGCTGACGCTAGATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164346643 234 - 169600520 GGGG---------------------------------------------------CGGTGAGGTGTGTGAGTG--GTTCCACAGGCCTC-TGGAGCCAGTGGCAGATGAGCACTGCACAG-GCAGCCTTTGAAGGCTG-TGGCGGAC---ACATGCCGGCAGACAAGC-----CTCTGCTGGTGGTGGAGCCAGGAGGAACAGGAGTAAAAGTGGCGAGTCTTTGGAAGCGTGTTGAGCAGCTCTGCTTTGCGTGGAGCCCAGGGTTTGTTGATAAGTGGTGGGGCTGAAACTAGACG
i rheMac8.chr7              I 1630 C 0
s macFas5.chr7              165667917 234 - 171882078 GGGG---------------------------------------------------CGGTGAGGTGTGTGAGTG--GTTCCACAGGCCTC-TGGAGCCAGTGGCAGATGAGCACTGCACAG-GCAGCCTTTGAAGGCTG-TGGCGGAC---ACATGCCGGCAGACAAGC-----CTCTGCTGGTGGTGGAGCCAGGAGGAACAGGAGTAAAAGTGGCGAGTCTTTGGAAGCGTGTTGAGCAGCTCTGCTTTGCGTGGAGCCCAGGGTTTGTTGATAAGTGGTGGGGCTGAAACTAGACG
i macFas5.chr7              I 1945 C 0
s macNem1.NW_012011934v1       521123 285 +   2379783 GGGGCGGTGAGGTGTGAGCGGTTCCACAGGCCTCTGTCTGTCCGCGGGGCCGGGGCGGTGAGGTGTGTGAGTG--GTTCCACAGGTCTC-TGGAGCCAGTGGCAGATGAGCACTGCACAG-GCAGCCTTTGAAGGCTG-TGGCGGAC---ACATGCCGGCAGACAAGC-----CTCTGCTGGTGGTGGAGCCAGGAGGAACAGGAGTAAAAGTGGCGAGTCTTTGGAAGCGTGTTGAGCAGCTCTGCTTTGCGTGGAGCCCAGGGTTTGTTGATAAGTGGTGGGGCTGAAACTAGACG
i macNem1.NW_012011934v1    I 46 C 0
s cerAty1.NW_012001462v1       479411 231 +   4116138 GGGG---------------------------------------------------CGGTGAGGTGTGTGAGTG--GTTCCACAGACCTC-TGGAGCCAGTGGCAGATGAGCACTGCACAG-GCAGCCTTTGAAGGCTG-TGGCGGAC---ACATGCCGGCAGACAAGC-----CTCTGCTGGTGGTGGAGCCAGGAGGAACAGGAGTAAAAGTGGCGAGTCTTTGGAAGCGTGTTGAGCAGCTCTGCTTTGCATGGAGCCCAGGGTTTGTTG---AGTGGTGGGGCTGAAGCTAGACG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53910140 233 +  58131712 GGGG---------------------------------------------------CGGTGAG--GTGTGAGTG--GTTCCACAGGCCTC-TGGAGCCAGTGGCAGATGAGCACTGCACAG-GCAGCCTTTGAAGGCTGTTGGCGGAC---ACATGCCGGCAGACAAGC-----CTCTGCTGGTGGTGGAGCCAGGAGGAGCAGGAGTAAAAGTGGCGAGTCTTTGGAAGCCTGTTGAGCAGCTCTGCTTTGCGTGGAGCCCAGGGTTTGTTGATGAGTGGTGGGGCTGAAGCTAGACG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       531649 232 -   3636681 GGGG---------------------------------------------------CGGTGAG--GTGTGAGCG--GTTCCACAGGCCTC-TGGAGCCGGTGGCAGATGAGCACTGCACAG-GCAGCCTTTGAAGGCTG-TGGCGGAC---ACATGCCGGCAGACAAGC-----CTCTGCTGGTGGTGGAGCCAGGAGGAGCAGGAGTAAAAGTGGCGAGTCTTTGGAAGCGTGTTGAGCAGCTCTGCTTTGCGTGGAGCCCAGGGTTTGTTGATGAGTGGTGGGGCTGAAGCTAGACG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       509953 233 -   4457520 GGGG---------------------------------------------------CGGTGAGGTGTGTGAGTG--GTTCCACAGGCCTC-TGGAGCCAGTGGCAGATGAGCACTGCACAG-GCAGCCTTTGAAGGCTG-TGGCGGAC---ACATACAGGCAGACAAGC-----CTCTGCTGGTGGTGGAGCCAGGAGGAGCAGGAGTAAAAGTGGCGAGTCTCTGGAAGCATGTTGAGCAGCCCTGCTTTGCTTGGAGCCCAGGGTTTGTCGATGAGTGGT-GGGCTGAAGCTAGACA
i colAng1.NW_012115278v1    I 99 C 0
s calJac3.chr6              154540306 232 - 158406734 GGGG---------------------------------------------------TGGTGAGGGGTGTGAGTG--GTTCCCTAGGTGTC-TGGAGCCAGTGGCGGCTGAGCGCTGGACAG-GCGGCCTTTGGAGGCTG-TGGCAGAC---AGATGCCAGCAGACAAGGA----CTCTGC---TGGTGGAGCCAGGAAGAGCAGGGGTGAAAGTGGCGAGTGTTTGGGGGCACGTTGAGCAGCTCTGCTTTGCTTGGAGTTCAGGGTTTATCGATGTGCAGTGGGGCTGAAGCTAGATG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             373029 234 -   2682657 GGGG---------------------------------------------------CGGTGAGGCATGTGAGTG--CTTCCATAGGCGCC-TGGAGCCAGTGGCAGCTGAGCGCTGGACAG-GCGGCCTTCGGAGGCTG-TGGCAGTC---AGATGCCAGCAGACAAGGA----CTCTGCCGGTGGTGGAGCCAGGAAGAGCA-GGGCGAAAGTAGCCAGTCTTTGGGAGCATGTTGAGCAGCTCTGCTTTGCTTGGAGTTTAGGGTTTCCCGACGCGCAGTGGGGCTGAGGCTAGATA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       398645 228 -   2086007 GGGG---------------------------------------------------CGGCGAGGCGTGTAAGTG--GTTCCATAGGCGTC-TGGAGCCAGTGGCAGCTGAGCGC-GGACAG-GCAGCCTTTGGAGGCTG-CGGCAGAC---AGATGCCAGCAGACAAGGA------CTGCCGGTGGTGGAGCCAGGAAGAG-A-GGGTGAAAGTGGCGAGTC--TGGGAGCGTGTTGAGCAGCTCTGCCTTGCTTGGAGTTCAGGGTATCTCGACGTGCAGTGGGGCTGAGGCTGGATG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       459702 235 +   3831555 GGGG---------------------------------------------------CGGTGAGGTGCGTGAGTG--GTTCCATAGGCATC-TGGAGCCAGTGGCAGCTGAGAGCTGGACAG-GCGGCCTTTGAAGGCTG-TGGCAGAC---AGATGCCAGCAGACAAGGA----CTCTGCTGGTGGTGGAGCCAGGAAGAGCAGGGGTGAAAGTAGTGAGTCTTTGGGAGCATGTTGAGCAGCTCTGCTTTGCTTGGAGTTCGGGGTTTATCGACGCGCAATGGGGCTGAAGCTAGATG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             483621 227 +   3845361 --------------------------------------------------------TGTGCTACGAGCCCGTT--AGTTCTAAGGTGTC-TAAGGACATTGGCAGCTGGGGCTGGCACAG-GTAGTCTTTGAAGGACA-TGGCAGGC---AGGTGCCAGGTGGCAATC-----TGGCATTGGTGGAGGAGACGGAAGGAGCACGGATGAAAGCAGTGAGTCTTTGGGAGGGTGCTGAGCAGCCCCTCCGTGCGTGGAGCTCAGGGC-TATTGGTGAGTC-CAAGGCTACAACTGGAGA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60058891 230 -  91889043 ---------------------------------------------------TGCACTGTGGAATGTGTAATTGCACTTCCACGGGTGTCGTGGGGACTCTGATGGCTGAGGGCTGGGGAGAGCAGCTTCTGAAGGGTG-TGGCAAGCACTAGGTGCAGTGTGATGAGGAAGCTCCATCCTGGTGGAAGAGACAGTAGGGACA-CAGACATATCAGTGAGT------------GTTGAAGTGCTTCCCTTT-CAAGGAGCTCA-GGTTTATTGATGAACG-TGAGGCAAAAGCTGGAGA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782   7 + 145441459 I
e proCoq1.NW_012148396v1     13531164 259 +  16154928 I
e dasNov3.JH562051             442249 1457 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=868514.000000
s hg38.chr15_KI270851v1_alt    211127 81 +    263054 -GGCAGCTGACATCCTGTTACAGAGTACCTGGGAGACCAGGGTGAAACTTGAGGCCCACTTGGAAAGCTGTGGTAGGGGCCA-
s panPan2.chr15              74131682 81 -  99763055 -GGTGGGTGACATCCTGTTACAGAGTACCTGGGAGACCAGGGTGAAACTTGAGGCCCACTTGGAAAGCTGTGGTAGGGGCCA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       175919 81 -    281578 -GGTGGGTGACATCCTGTTACAGAGTACCTGGGAGACCAGGGTGAAACTTGAGACCCACTTGGAAAGCTGTGGTAGGGGCCA-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71038267 81 + 121039945 -GGCGGGTGACATCCTGTTACAGAGTACCTTGGAGACCAGGGTGAAACTTTAGGCCCACTTGGAAAGCTGTGGTAGGGGCCA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164346877 81 - 169600520 -GGTGGTTGACATCCTGTTACAGAGTACCTTGGAGACCAGGGTGAAACTTGAGGCCCACTTGGAAAGCTGTGGTAGGGGCCA-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165668151 81 - 171882078 -GGTGGTTGACATCCTGTTACAGAGTACCTTGGAGACCAGGGTGAAACTTGAGGCCCACTTGGAAAGCTGTGGTAGGGGCCA-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       521408 81 +   2379783 -GGTGGTTGACATCCTGTTACAGAGTACCTTGGAGACCAGGGTGAAACTTGAGGCCCACTTGGAAAGCTGTGGTAGGGGCCA-
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       479642 81 +   4116138 -GGTGGTTGACATCCTGTTACAGAGTACCTTGGAGACCAGGGTGAAACTTGAGGCCCACTTGGATAGCTGTGGTAGGGGCCA-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53910373 81 +  58131712 -GGTGGTTGACATCCTGTTACAGAGTACCTTGGAGACCGGGGTGAAACTTGAGGCCCACTTGGAATGCTGTGGTAGGGGCCA-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       531881 81 -   3636681 -GGTGGTTGACATCCTGTTACAGAGTACCTTGGAGACCAGGGTGAAACTTGAGGCCCACTTGGAAAGCTGTGGTAGGGGCCA-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       510186 80 -   4457520 -GGTGGTTGACATCCTGTTACAGAGTACCTGGGAGACCAGGGTGAAACTTGAGGCCCAC-TGGAAAGCTGTGGTAGGGGCCA-
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154540538 80 - 158406734 -GGTGGTTGATGTCCTGCTGCAGAGTACCTTGGAGACCAGGGTGAAACTTGGGGCCCACTTGGGAAGCTGTGGCA-GGGCCA-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             373263 80 -   2682657 -GGCGGTTGACGTCCTGCTGCAGAGTACCTTGGAGACCAGGGTGAGACTTGAGGCCCGCTTGGAAAGCTGTGGCA-GGGCCA-
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       398873 80 -   2086007 -GGTGGTTGACGTCCTGCTGCAGAGTACCTTGGAGAGCAGGGTGAAACTTGAGGCCCACCTGGGAAGCTGTGGCA-GGGCCA-
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       459937 80 +   3831555 -GGTGGTTGATGTCCTGCTGCAGAGTACCTTGGAGACCAGGGTGAAACTTGAGGCCCACTTGGAAAGCTGTGGCA-GGGCCA-
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13531423 80 +  16154928 -GGCAGTTGACATCCTGTTATAGAGTGCCTTGGAGGCCAGGTTGGAA-TTAAGGTCGATTCGGAAAGCTGTGGCAGGGGCCA-
i proCoq1.NW_012148396v1    I 259 I 340
s otoGar3.GL873689             483848 79 +   3845361 -GGCAGGTGACGTCCTGGTGCAGGGTGCCTTGGAGACCGGGGTTGGA-TTAAGGCCAACTGAGAAGTCTGTGG-GGGAGCCA-
i otoGar3.GL873689          C 0 I 5
s canFam3.chr3               60059121 81 -  91889043 GATCACCTGAATTCATGTGATATAATGCCTTGAATCCCAGGGTGAAACTTAAGGCTAATTTAGGA--CTGTAGTGGGGATTCA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e dasNov3.JH562051             442249 1457 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=2113582.000000
s hg38.chr15_KI270851v1_alt    211208 236 +    263054 CATGGTAAGCATTGAC--CTTC---GGGTGATACACCTGCTAGGAAGGTATAGGA-GTATCTGAAACAG-GAGATGACAGAGATG-GAGAATTGCTCCTGCGTCAGGTGATGAG----------GGGGAAGGCATG-AAAAGGGAAAGAAGGTTCTGGTGG-AAGGAAGGTGCCATCCACTGTGATGGTGTAGT-CTTGTAGATGATAACTTTATGGGGAACCAGCAAAAAGTGGAAGGTGA--CTGCTGTTTCAAGCT
s panPan2.chr15              74131763 238 -  99763055 CATGGTAAGCATTGAC--CTTT---GGGTGATACACCTGCTAGGAAGGTATAGGA-GTATCTGAAACAG-GAGATGACAGAGATG-GAGAATTGCTCCTGCCTCAAGTGATGAG----------GGGGAAGGCATG-AAAAGGGAAAGAAGGTTCTGGTGG-AAGGAAGGTGCCATCCACTGTGATGATGTAGT-CTTGTAGATGATAACTTTATGGGGAACCAGCAAAAAGTGGAAGGTGACTCTGCTGTTTCAAGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       176000 238 -    281578 CATGGTAAGCATTGAC--CTTT---GGGTGATACACCTGCTAGGAAGGTATAGGA-GTATCTGAAACAG-GAGATGACAGAGATG-GAGAATTGCTCCTGCGTCAGGTGATGAG----------GGGGAAGGCATG-AAAAGGGAAAGAAGGTTCTGGTGG-AAGGAAGGCGCCATCCACTGTGATGGTGTAGT-CTTGTAGATGATAACTTTATGGGGAACCAGCAAAAAGTGGAAGGTGACTCTGCTGTTTCAAGCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71038348 239 + 121039945 CATGGTAAGCATTGAC--CTTC---GGGTGATACACCTGCTAGTAAGGTATAGGA-GTATCTGAAACAG-GAGATGACAGAGATG-GAGAATTGCTCCTATGTCAGGTGATGAG----------GGGGAAGGCATG-AAAAGGGAAAGAAGGTTCTGGTGGAAAGGAAGGTGCCATCCACTGTGATGGTGTAGT-CTTGTAGATGATAACTTTTTGGGGAACCAGCAAAAAGTGGAAGATGACTCTGCTGTTTCAAGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164346958 236 - 169600520 CATGGTAAGCGTTGAC--CTTC---GGGTGATACAGCTGCTAGTAAGGTATAGGA-GTATCTGAAACGG-GAGATGACAGAGATG-GAGATTTGCTCCTGTGTCAGGTGATGAG----------GGGGAAGGCATG-AAAACGGAAAGAAGATTCTGGTGG-AAGGAGGGTGCCATCCACTGTGATGGTGTAGT-CTTGGAGATGACAACTTTGTGGGGAACCAGCAAAAAGTGGAAGATGC--CTGCTCTTTCAAGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165668232 236 - 171882078 CATGGTAAGCGTTGAC--CTTC---GGGTGATACAGCTGCTAGTAAGGTATAGGA-GTATCTGAAACGG-GAGATGACAGAGATG-GAGATTTGCTCCTGTGTCAGGTGATGAG----------GGGGAAGGCATG-AAAACGGAAAGAAGATTCTGGTGG-AAGGAGGGTGCCATCCACTGTGATGGTGTAGT-CTTGGAGATGACAACTTTGTGGGGAACCAGCAAAAAGTGGAAGATGC--CTGCTCTTTCAAGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       521489 236 +   2379783 CATGGTAAGCGTTGAC--CTTC---GGGTGATACAGCTGCTAGTAAGGTATAGGA-GTATCTGAAACGG-GAGATGACAGAGATG-GAGATTTGCTCCTGTGTCAGGTGATGAG----------GGGGAAGGCGTG-AAAATGGAAAGAAGATTCTGGTGG-AAGGAGGGTGCCATCCGCTGTGATGGTGTAGT-CTTGGAGATGACAACTTTGTGGGGAACCAGCAAAAAGTGGAAGATGC--CTGCTCTTTCAAGCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       479723 232 +   4116138 CATGGTAAGCATTGAC--CTTC---GGGTGATACAGCTGCTAGTAAGGTATAGGA-GTATCTGAAACGG-GAGATGACAGAA--G-GAGATTTGCTCCTGTGTCAGGTGATGAG----------GGGGAAGGCATG-AAAACGGAAAGAAGGTTCTGGTGG-AAGGAGGGTGCCATCCACTGTGATGGTGTAGT-GTTGGAGATGACAAC--TGTGGGGAACCAGCAAAAAGTGGAAGATGC--CTGCTCTTTCAAGCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53910454 236 +  58131712 CATGGTAAGCATTGAC--CTTC---AGGTGATACAGCTGCTAGTAAGGTATAGGA-GTATCTGAAACGG-GAGATGACAGAGATG-GAGATTTGCTCCTGTGTCAGGTGATGAG----------GGGGAAGGCATG-AAAACGGAAAGAAGGTTCTGGTGG-AAGGAGGGTGCCATCCACTGTGATGGTGTAGT-CTTGGAGATTACAACTTTGTGGGGAACCAGCAAAAAGTGGAAGATGC--CTGCTCTTTCAAGCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       531962 234 -   3636681 CATGGTAAGCATTGAC--CTTC---GGGTGATACAGCTGCTAGTAAGGTATAGGA-GTATCTGAAACGG-GAGATGACAGAGATG-GAGATTTGCTCCTGTGTCAGGTGATGAG----------GGGGAAGGCATG-AAAACGGAAAGAAGGTTCTGGTGG-AAGGAGGGTGCCATCCACTGTGATGGTGTAGT-CTTGGAGATGACAAC--TGTGGGGAACCAGCAAAAAGTGGAAGATGC--CTGCTCTTTCAAGCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       510266 236 -   4457520 CATGGTAAGCATTGAC--CTTC---GGGTGATACACCTGCTAGTAAGGTCTAGGA-GTATCTGAAACGG-GAGATGACAGAGATG-GAGATTTGCTCCTGTGTCAGGTGATGAG----------GGGGAAGGCATG-AAAACGGAAGGAAGGTGCTGGTGG-AAGGAGGGTGCCATCCACTGTGATGGTGTAGT-CTTGGAGATGACAACTTTGTGGGGAACCAGCAAAAAGTGGAAGATGC--CTGCTCTTTCAAGCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154540618 223 - 158406734 CATGGTAAGCACTGAC--CTTC---GGGTGATGCACCTGCTGGTAAGGTGCAGTA-GTATCTGATACCA-GAGATGACAGAGATG-AAGAATTGCTCCTGTGTCAAGTGATGAG----------TGGGAAGGCATG-AAAAGGAAAAGAAGGTTCTGGTGG-AAGGAAGGTGCCATCCACTGTGATGGTGTAGT-CTTGTAGATAATAGCTATGTGGGGCTCCAGCAGGAAATGGAATGT---------------GGCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             373343 235 -   2682657 CAAGGTAAGCACTGAC--CTTC---GGGTGATGCACCTGCCAGTGAGGTACAGTA-GTATCTGACACCA-GAGATGACAGAGATG-GAGAATTGCTCCTGTGTCAGATGATGAG-----------GGGAAGGCATG-GAAAGGGAAAGAAGGTTCTGGTGG-AAGGAAGGTGCCATCCATTGCGATGGCGTAGT-CTTGTAGATAATAGCTATGTGGGAATCCAGCAAAAAATGGAATGTGG--CTGATGTTTCAGGCT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       398953 236 -   2086007 CATGGAAAGCATTGAC--CTTC---GGGCGATGCACCTGCTAGTAAGGTACAGTA-GTATCTGACACCA-GAGATGACAGAGATG-GAGAATTGCTCCTGTGTCAAGTGATGAG----------GGGGAAGGCATG-GAAAGGGAAAGAAGGATCTGGTGG-AAGGAAGGTGCCGTCCACTGTGATGGTGTAGT-CTTGTAGATAATAGCTATGTGGGAATCCAGCAAAAAATGGAATGTGG--CTGATGTTTCAAGCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       460017 235 +   3831555 CATGGT-AGCATTGAC--CTTC---GGGTGATGCACCTGCTAGTAAGGTACAGGA-GTATCTGACACCG-GAGATGACAGAGATG-GAGAATTGCTCCTGTGTCAAGTGAGGAG----------GGGGAAGGCATG-AAAAGGGAAAGAAGGTTTTGGTGG-AAGGAAGGTGCTGTCCACTGTGATGGTATAGT-CTTGTAGATAATAGCTATGTGGGAATCCAGCAAAAAATGGAATGTGG--CTGATGTTTCAAGCT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             483932 211 +   3845361 CAGGGT--GGACTGGT--GTTCAGGGGGTGACAGATCTGCTAGTGAGGCGTAGGA--TGTTTGA-ATAG-GAGATTA-GGGCATG-GA----------------AAATGAGGAGGTGCCTTCCAGGGGGAGGCAGA-GAAGTGGA--GAAGGCTCTTGGGG-G--------------CGCCGTGATGGTGGA-T-TACACAGATGATAACTTGGTGTGAAGCCAGTGAAAAGTCAGAGATGG--CTGATGGTTCACATT
i otoGar3.GL873689          I 5 C 0
s canFam3.chr3               60059202 239 -  91889043 CATGATAAAGACTGATAATTCA---GGATGATAAATCTACTAGTGTGGTATAGGAAGTATTTGAAAAAGAAAGGCCATGGAGATGAGAAAATTGTTTTTGTGTCAAGGGATAAGGTGTCTTCTGGGGGAAGGCATGAAAAATGGAAAGAAGGTTCCAAGAG-A--------------TAATGTGATGGTGTAGTGTTTTTTGATGATAAGTGCATGGGAAACCAGTGAAAAGTCAAAGATGG--CTGACGTTTCAAGCT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782   7 + 145441459 I
e proCoq1.NW_012148396v1     13531503 340 +  16154928 I
e dasNov3.JH562051             442249 1457 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=762387.000000
s hg38.chr15_KI270851v1_alt    211444 76 +    263054 TGAGTTGA------------GGGAGGAATATTGAGTAGTGTGTTTGAAACAAAT----AAGTCCAGTAGAATGTGGAGTGTGTGTGTTTGCT
s panPan2.chr15              74132001 80 -  99763055 TGAGTTGA------------GGGGAGAATATTGAGTAGTGTGTTTGAAACAAATAAGCAAGTCCAGTAGAATGTGGAGTGTGTGCGTTTGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       176238 80 -    281578 TGAATTGA------------GGGGAGAATAGTGAGTGGTGCGTTTGAAAAAAATATGCAAGTCCAGTAGAATGTGGAGTATGTGGGTTTGTT
i gorGor5.CYUI01000141v1    C 0 I 6
s nomLeu3.chr6               71038587 80 + 121039945 TGAGTTGA------------GGGGAGAATAGTGAGTGGTGCGTTTGAAAAAAATAAGCAAGTCCAGTAGGATGTGGAGTGTGTGTGTTTGTT
i nomLeu3.chr6              C 0 I 6
s rheMac8.chr7              164347194 80 - 169600520 TGAGTTGA------------GGGGAGAATAGTGAGTAGTGCGTTTGAAAAAAATAAGCAAGTCCAGTCGAATGTGGAGTTTGTGGGTTTGTT
i rheMac8.chr7              C 0 I 6
s macFas5.chr7              165668468 80 - 171882078 TGAGTTGA------------GGGGAGAATAGTGAGTAGTGCGTTTGAAAAAAATAAGCAAGGCCAGTCGAATGTGGAGTTTGTGGGTTTGTT
i macFas5.chr7              C 0 I 6
s macNem1.NW_012011934v1       521725 80 +   2379783 TGAGTTGA------------GGGGAGAATAGTGAGTAGTGCGTTTGAAAAAAATAAGCAAGTCGAGTCGAATGTGGAGTTTGTGGGTTTGTT
i macNem1.NW_012011934v1    C 0 I 6
s cerAty1.NW_012001462v1       479955 80 +   4116138 TGAGTTGA------------GGGGAGAATAGTGAGTAGTGCGTTTGAAAAAAATAACCAAGTCCAGTAGAATGTGGAGTTTGTGGGTTTGTT
i cerAty1.NW_012001462v1    C 0 I 6
s chlSab2.chr26              53910690 80 +  58131712 TGAGTTGA------------GGGGAGAATAGTGAGTAGTGCGTTTGAAAAAAATAAGCAAGTCCAGTAGAATGTCGAGTTTGTGGGTTTGTT
i chlSab2.chr26             C 0 I 6
s manLeu1.NW_012102332v1       532196 80 -   3636681 TGAGTTGA------------GGGGAGAATAGTGAGTAGTGCGTTTGAAAAAAATAAGCAAGTCCAGTCGAATGTGGAGTTTGTGGGTTTGTT
i manLeu1.NW_012102332v1    C 0 I 6
s colAng1.NW_012115278v1       510502 80 -   4457520 TGAGTTGA------------GGGGAGAATGGTGAGTAGTGCGTTTGAAAAAAATAAGCAAGTCCAGTAGAAGGTGGAGTTTGTGGGTTTGTT
i colAng1.NW_012115278v1    C 0 I 6
s calJac3.chr6              154540841 80 - 158406734 TGAGATGA------------GGGGAGAATACTGAGTAGTGCATTTGAAAAAAATAAGCAAGTCCAGTAGAATGTGGAGTGTTTGGGTTTGTT
i calJac3.chr6              C 0 I 6
s saiBol1.JH378292             373578 66 -   2682657 GGAGATGA------------GGGGAGA--------------ATTTGAAGAAAATAAGCAAGTCCAGTAGCATGTGGAGGGTGTGGCTTTGTT
i saiBol1.JH378292          C 0 I 6
s cebCap1.NW_016107707v1       399189 80 -   2086007 TGAGATGA------------GGGGAGAATTCTGAGTAGTGCATTTGAAGAAAATAAGCAAGTCCAGTAGAATGTGGAGTGTTCGGGTTTGTT
i cebCap1.NW_016107707v1    C 0 I 6
s aotNan1.NW_018503298v1       460252 80 +   3831555 TGAGATGA------------GGGGAGAATACTGAGTAGTGCATTTGAAAAAAATAAGCAAGTCCAGTAGGATGTGGAGTGTGTGGGTTTGTT
i aotNan1.NW_018503298v1    C 0 I 6
s otoGar3.GL873689             484143 87 +   3845361 TGGGCTGATTTTGTGGGTTGAGGCAGAACAGTGAGCAGTGCATTTGCAAAGA-----TGAGTCTAGCAGAATGTGGAGAGCTTGAGTTTGTT
i otoGar3.GL873689          C 0 I 6
s canFam3.chr3               60059441 80 -  91889043 TGAGTTAC------------AGGGAGGGCAGAGGGGAGTGCCTTTGACAAAAATTAGAAAGTCCAGTGGAGTGTGATATGTCTTGTTTTGTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             443706 74 +    563711 TGTGTTAT------------TGGGAGAATTGTGGGTAGTGCATTTGACAACA------AAGTCCAGTGGAGAGtgttttgttttgttttgtt
i dasNov3.JH562051          I 1457 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13531503 340 +  16154928 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=1933592.000000
s hg38.chr15_KI270851v1_alt    211520 222 +    263054 ----------TCTT---------------------------------------------------------------------------AAGA-GGAGAGGATGCTATGAAATTAATTTTAAACCTGCTGAGGATGAAAG---AAATCAATTGAAAGTATAGAATCAATTA-ATAGTAGAGGTCGTAGGGAACATGAAGAT--TTCCCAGTTGT-AGAGATTGGGAGATTGGAGCCT-GGGAATTGGATTGGCTGTTCTGTTCTGCACTCAGCCCGATGAGCAATTACAG-CAGACCTGAATCAGGA-TGATCAAGTC
s panPan2.chr15              74132081 222 -  99763055 ----------TCTT---------------------------------------------------------------------------AAGA-GGAGAGGATGCTATGAAATTAATTTTAAGCCTGCTGAGGATGAAAG---AAATCAATTGAAAGTATAGAATCAATTA-ATAGTAGAGGTTATAGGGAACATGAAGAT--TTCCCAGTTGT-AGAGATTGGAAGATTGGAGCCC-GGGAATTGGATTGGCTGTTCTGTTCTGCACTCAGCCCAATAAGCAGTTACAG-CAGACCTGAATCAGGA-TGATCAAGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       176324 222 -    281578 ----------TCTT---------------------------------------------------------------------------AAGA-GGAGAGGATGCTATGAAATTAATTTTAAACCTGCTGAGGATGAAAG---AAATCAATTGAAAGTATAGAATCAATTA-ATAGTAGAGGTTATAGGGAACATGAAGAT--TTCCCAGTTGT-AGAGATCGGGAGATTGGAGCCT-GGGAATTGGATTGGCTGTTCTGTTCTGCACTCAGCCCAATGAGCAGTTACAG-CAGACCTGAATCAGGA-TGATCAAGTC
i gorGor5.CYUI01000141v1    I 6 C 0
s nomLeu3.chr6               71038673 213 + 121039945 ----------TCTT---------------------------------------------------------------------------------GAGAGGATGCTATGAAATTAATTTTAAACCTGCTGAGGATGAAAG---AAATCGATTGAAAGTATAGAATCAATCA-ATAGTAGAGGTTGTAGGGAACAT---GAT--TTCCCAGTTGT-AGCGATTGAGAGATTGGAG-CT-GGGAATTGGATTGGCTGTTCTGTTCTGCACTCAGCCCAACGAGCAGTTATAG-CAGACCTGAATCAGGA-TGATCAAGTG
i nomLeu3.chr6              I 6 C 0
s rheMac8.chr7              164347280 222 - 169600520 ----------TCTT---------------------------------------------------------------------------AAGA-GGAGAGGATGCTATGAAATTAATTTTAAACCTGCTGAGGGTGAAAG---AAAGCGATTGAAAGCATAGAATCAATCA-ATAGCAGAGGTTGTAGGGAACGTGAAGAT--TTCCCAGTTGT-AGAGACTGAGAGATTGGAGCCC-GGGAATTGGATTGGCTGTTCTGTTCTGCGCTCAGCCCAGGGAGCAGTTACCG-CAGACCTGAATCAGGA-TTATCAAGGC
i rheMac8.chr7              I 6 C 0
s macFas5.chr7              165668554 222 - 171882078 ----------TCTT---------------------------------------------------------------------------AAGA-GGAGAGGATGCTATGAAATTAATTTTAAACCTGCTGAGGGTGAAAG---AAAGCGATTGAAAGCATAGAATCAATCA-ATAGCAGAGGTTGTAGGGAACGTGAAGAT--TTCCCAGTTGT-AGAGACTGAGAGATTGGAGCCC-GGGAATTGGATTGGCTGTTCTGTTCTGCGCTCAGCCCAGGGAGCAGTTACCG-CAGACCTGAATCAGGA-TTATCAAGGC
i macFas5.chr7              I 6 C 0
s macNem1.NW_012011934v1       521811 222 +   2379783 ----------TCTT---------------------------------------------------------------------------AAGA-GGAGAGGATGCTATGAAATTAATTTTAAACCTGCTGAGGGTGAAAG---AAAGCGATTGAAAGCATAGAATCAATCA-ATAGCAGAGGTTGTAGGGAACGTGAAGAT--TTCCCAGTTGT-AGAGACTGAGAGATTGGAGCCC-GGGAATTGGATTGGCTGTTCTGTTCTGCGCTCAGCCCAGGGAGCAGTTACCG-CAGACCTGAATCAGGA-TTATCAAGGC
i macNem1.NW_012011934v1    I 6 C 0
s cerAty1.NW_012001462v1       480041 223 +   4116138 ----------TCTT---------------------------------------------------------------------------AAGA-GGAGAGGATGCTATGAAATTAATTTTGAACCTGCTGAGGGTGAAAG---AAAGCGATTGAAAGCATAGAATCAATCA-ATAGCAGAGGTTGTAGGGAACGTGAAGAT--TTCCCAGTTGT-AGAGACTGAGAGATTGGAGCCC-GGGGATTGGATTGGCTGTTCTGTTCTGCGCTCAGCCCAGGGAGCAGTTACCG-CAGACCTGAATCAGGATTTATCAAGGC
i cerAty1.NW_012001462v1    I 6 C 0
s chlSab2.chr26              53910776 211 +  58131712 ----------TC---------------------------------------------------------------------------------------GGATGCTATGAAAATAATTTTAAACCTGCTGAGGGTGAAAG---AAAGCGATTGAAAGCATAGAATCAATCA-ATAGCAGAAGTTGTAGGGAACGTGAAGAT--TTCCCAGTTGT-AGAGACTGAGAGATTGGAGCCC-AGGAATTGGATTGGCTGTTCTATTCTGCGCTCAGCCCAGGGAGCAGTTACTG-CAGACCTGAATCAGGA-TTATCAAGGC
i chlSab2.chr26             I 6 C 0
s manLeu1.NW_012102332v1       532282 222 -   3636681 ----------TCTT---------------------------------------------------------------------------AAGA-GGAGAGGATACTATGAAATTAATTTTAAACCTCCTGAGGGTGAAAG---AAAGCGATTGAAAGCATAGAATCAATCA-ATAGCAGAGGTTGTAGGGAACGTGAAGAT--TTCCCAGTTGT-AGAGACTGAGAGATTGGAGCCC-GGGAATTGGATTGGCTGTTCTGTTCTGCGCTCAGCCCAGGGAGCAGTTGCCG-CAGACCTGAATCAGGA-TTATCAAGGC
i manLeu1.NW_012102332v1    I 6 C 0
s colAng1.NW_012115278v1       510588 222 -   4457520 ----------TCTT---------------------------------------------------------------------------AAGA-GGAGAGGATGCTGTGAAATTAATTTTAAACCTGCTGAGGGTGAAAG---AAAGCGACTGAAAGCATAGAATCAATCA-ATAGCAGAGGTTGTAGGGAACGTGAAGAT--TTCCCAGTTGT-AGAGACTGCGAGATTGGAGCCC-GGGAATTGGATTGGCTGTTCTGTTCTGCGCTCAGCCCAGGGAGCAGTTACCG-CAGACCTGAATCAGGA-TTATCAAGGC
i colAng1.NW_012115278v1    I 6 C 0
s calJac3.chr6              154540927 272 - 158406734 ----------TCTTAGGAGGAGAGTAATATACTGAACAGAGAAAAGTTGAAAAAAAGAAAGA----------------AAGGAAAAAGCAAGG-GGAGAGGATGTTATGAAATTAATTTTAAACCTGCTGAGGATGAGAG---AAACTGATGGAAAGTATAGATTCAGTCAAACAGTGGAGGTTGCCGGGAACATGAAGAT--TTCCATGCTGT-AGAGATTGGGAGATTAGAGCCT-GGGAATTGGATTGGCTCTTGTGTTCTCCACTCAGCCCAGTGAGCAGTTACAG-CAGACCTGAATCAGGA-----------
i calJac3.chr6              I 6 C 0
s saiBol1.JH378292             373650 260 -   2682657 ----------TCTTGGGAGGAGAGTAATATACTGAAC------------AGAGAAAAGTTGA----------------AAAGAAGAAAAAAGG-GAAGAGGATGTTATGAAATTAATTTTAAACCTGCTGCGGATGAGAG---AAATTGATGGAAAGTGTAGATTCAGTCAAATAGTGGAGGTTGCAGGGGACATGAAGAT--TTCCCAGTTGC-AGAGATTGGGAGATTAGAGCTT-GGGAATCGGATTGGCTCTTCTGTTCTCCGCTCAGCCCCCTGAGCAGTTACAG-CAGACCTGAGTCAGGA-----------
i saiBol1.JH378292          I 6 C 0
s cebCap1.NW_016107707v1       399275 276 -   2086007 ----------TCTTAGGAGGAGAGTAATATACTGAAC------------AGAGAGAAGTTGAAAACAAAGAAAAAAAGAAGAAAAAAGCAAGG-GAAGAAGATGCTGTGAAATGAATTTTAAACCTGCTGAGGATGAGAG---AAATTGATGGAAAGTATAGATTCAATCAAATAGTGGAGGTTGTAGGGAGCATGAAGAT--TTCCCAGGTGT-AGAGATTGGGAGATTAGAGCCT-GGGAATCAGATTGGCTCTTCTGTTCTCCGCTCAGCCCACTGAGCAGTTGCAG-CAGACCTGAATCAGGA-----------
i cebCap1.NW_016107707v1    I 6 C 0
s aotNan1.NW_018503298v1       460338 264 +   3831555 ----------TCTTAGGAGGAGAGTAATACACTGAAC------------AGAGAAAAGCTGA------------AAAAAAGGAAAAAGTAAGG-GGAGAGGATGTTATGAAATTAATTTTAAACCTGCTGAGGATGAGAG---AAATTGATGGAAAGTATAGATTCAATCATATAGTGGAGGTTGTAGTGAACACAAAGAT--TTCCCAGTTGT-AGAGATTGGGAGATTGGAGCCT-GGGAATTGGATTGGCTGTTCTGTTCTCCGCTCAGCCCAATGAGCAGTTACAG-CAGACCTGAATCAGGA-----------
i aotNan1.NW_018503298v1    I 6 C 0
s proCoq1.NW_012148396v1     13531843 218 +  16154928 ----------TCTT---------------------------------------------------------------------------AAGA-CGAGAGGATATTCTGAAATTAATTTTAAACCTGCTGAGTTTGAGAG---AAATTGATTGAGAGTGCAGATTCATTC--ATATTAGAGGTGGTAGGGACCTTGAAGATAATTCATAATTGC-AGAGATTGGGAAACTGGAGCTT-GGGAATTGGGCCAGCTGTTCTG-----CCCTCACCCTGATGAACAGTTATGA-CAGAGATGACTCAAGG-TTATCAAGTC
i proCoq1.NW_012148396v1    I 340 C 0
s otoGar3.GL873689             484236 189 +   3845361 ----------TCTT---------------------------------------------------------------------------AAGC-TGAGAGGATACTGTGAAGTTAATTTTAAACCTGCCTACTTTGAGAG---GTAGGG-----------AGGTTCGTTC--TTATTAGAGGTGGTAGGGATGTTGGAGGTAATTCATACTTGG-AGACATTGGGAAAGTGGAGCCT-GGGAATTGGGTTGGCTGTTGTG-----CGCTGACCCTGAT-AACAGC------------TGACTCAGGG-TTAT------
i otoGar3.GL873689          I 6 C 0
s canFam3.chr3               60059521 204 -  91889043 ----------TCTT---------------------------------------------------------------------------AATCTTAAGAGTGTATTGTGAATTTAATTTTAA---TG-TGAGTATAAGGT---AAATCTAATTAAAGTACAGATTTATTCT-GTAAGA-------TAGAGACCTTAAAGGTAAGCCGCAGTTGTAAAAAATCAGGAAACCAGAGCCCAAGGAATTTGGTTGGTTATTCTTT-----GGTCACTCTGGTGAGTAGTTCTGGATGGGACTGAATCAGGC-AT--------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             443780 205 +    563711 tCTTTCTTAATCTT---------------------------------------------------------------------------AAGA-AGAAAGGGTATTGTGGATTTAATTTTAAACATGCTGAGTTTGAGGAATTAAATTGATGGAAACTATGGGTTCATTCA-AAATTAGCGAT---------------GAT--------------AGGGACTagaaaattgaagccc-cagagtttatatggctttcctat-----gctcacagcacagagtagttattggcagagatgaatctgga-TTATTGTGTC
i dasNov3.JH562051          C 0 I 160
e mm10.chr7                  56156782   7 + 145441459 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=5816.000000
s hg38.chr15_KI270851v1_alt    211742 3 +    263054 TGT
s panPan2.chr15              74132303 3 -  99763055 TGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       176546 3 -    281578 TGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71038886 3 + 121039945 TGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164347502 1 - 169600520 --T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165668776 1 - 171882078 --T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       522033 1 +   2379783 --T
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       480264 1 +   4116138 --T
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53910987 1 +  58131712 --T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       532504 1 -   3636681 --T
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       510810 1 -   4457520 --T
i colAng1.NW_012115278v1    C 0 C 0
s proCoq1.NW_012148396v1     13532061 3 +  16154928 TGT
i proCoq1.NW_012148396v1    C 0 I 45
e mm10.chr7                  56156782 7 + 145441459 I
e dasNov3.JH562051             443985 160 +    563711 I
e canFam3.chr3               60059725 0 -  91889043 C
e aotNan1.NW_018503298v1       460602 0 +   3831555 C
e otoGar3.GL873689             484425 0 +   3845361 C
e cebCap1.NW_016107707v1       399551 0 -   2086007 C
e panTro5.chr15               9597515 12605 +  83230942 I
e saiBol1.JH378292             373910 0 -   2682657 C
e calJac3.chr6              154541199 0 - 158406734 C

a score=364087.000000
s hg38.chr15_KI270851v1_alt    211745 42 +    263054 GCTTTGGGCCGAGCAGGGACTCCGAACAGAGCT--------------------------------AGATTGACA
s panPan2.chr15              74132306 42 -  99763055 GCTTTGGGCCGAGCAGGGACTCCGAACAGAGCT--------------------------------AGATTGACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       176549 42 -    281578 GCTTTGGGCCGAGCAGGGACTCCGAACAGAGCT--------------------------------AGATTGACA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71038889 42 + 121039945 GCTTTGGGCCAAGCAGGGACTTGGAACAGAGCT--------------------------------AGATTGACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164347503 42 - 169600520 GCTTTGGGCCGAGCAGGGACTCCGGACAGAGCT--------------------------------AGATTGACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165668777 42 - 171882078 GCTTTGGGCCGAGCAGGGACTCCGGACAGAGCT--------------------------------AGATTGACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       522034 42 +   2379783 GCTTTGGGCCGAGCAGGGACTCCGGACAGAGCT--------------------------------AGATTGACA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       480265 42 +   4116138 GCTTTGGGCGGAGCAGGGACTCCGGACAGAGCT--------------------------------AGATTGGCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53910988 42 +  58131712 GATTTGGGCCGAGCAGGGACTCCGGACAGAGCT--------------------------------AGATTGACG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       532505 42 -   3636681 GCTTTGGGCCGAGCAGGGACTCTGGACAGAGCT--------------------------------AGATTGACA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       510811 42 -   4457520 GCTGTGGGCCGAGCAGGGACTCCGGACAGAGCT--------------------------------AGATCGACA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154541199 36 - 158406734 ------GGTAGAGCAGGGACTCCAGACAGAGCT--------------------------------AGACTGACA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             373910 37 -   2682657 -----GGGCAGAGCAGGGACTCCAGACAGAGCT--------------------------------AGATCAACA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       399551 37 -   2086007 -----GGGCAGAGCAGGGACTCCAGACAGAGCT--------------------------------AGATTGAca
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       460602 37 +   3831555 -----GGGTAGAGCAGGGACTCCAGACAGGGCT--------------------------------AGATTGACA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             484425 72 +   3845361 GTGTTGGGCTGAACAGGGGATCTAGATGAAGCTGTG--GAATTACTCTGGTGCCTGTTTTTGTAAGGACCGACA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60059725 52 -  91889043 GCTTGGGACAGAGTAGGGGCTCCAGACAGAGCTGTGTAGAGCAG---------------------GGCTTGAC-
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13532064 45 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=1944118.000000
s hg38.chr15_KI270851v1_alt    211787 192 +    263054 AAACTGCCGTG--cacctgtttttgtaaat----ttttatgggaaca--caggcacaccacttgtttacacatcgtctctggatgcttttgctctgcaatggcagagctgagtagttgggacagagac------tgtacagcccatcagcctaaactatttactctctggccctttaagagaaaga-tttccagctcctgGTCTAGT----
s panPan2.chr15              74132348 192 -  99763055 AAACTACCGTG--cacctgtttttgtaaat----ttttatgggaaca--caggcacaccacttgtttacacatcatctctggatgcttttgctctgcagtggcagagctgaatagttgggacagagac------tgtacagcccatcagtctaaactatttactctctggcccttcaagagaaaga-tttccagctcctCGTCTAGT----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       176591 192 -    281578 AAACTGCCATG--cacctgtttttgtaaat----ttttatgggaaca--cagccacaccatttgtttacacatcatctctggatgcttctgctctgcaatggcagagctgaatagttgggacagagac------tgtacagcccatcagcctaaactatttactctctggccctttaagagaaaga-tttccagctcctgGTCTAGT----
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71038931 191 + 121039945 AAACTGCCGTG--catctgtttttgtaaat----ttttatgggaaca--caggcacaccgcttgtttacatatcatctctggatgcttttgctctacagtggcagagctgagtagttgggacagagac------tgtacagcccatcagcctaaactatttactctctggccctttaagagaaaga--ttccagctcctgGTCTAGT----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164347545 192 - 169600520 AAACTGCTGTG--cacctgtttctgtacat----ttttatgggaaca--caggcacaccacttgttcacacatcatctctggctgcttttgctctacagtggcagagctgaatagttgggacagaaac------tgtacagcccatcggcctaaactatttactctctggccctttaagagaaaga-tttccagcccctgGTCTAGT----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165668819 192 - 171882078 AAACTGCTGTG--cacctgtttctgtacat----ttttatgggaaca--caggcacaccacttgttcacacatcatctctggctgcttttgctctacagtggcagagctgaatagttgggacagaaac------tgtacagcccatcggcctaaactatttactctctggccctttaagagaaaga-tttccagcccctgGTCTAGT----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       522076 192 +   2379783 AAACTGCTGTG--cacctgtttctgtacat----ttttatgggaaca--caggcacaccacttgttcacacatcatctctggctgcttttgctctacagtggcagagctgaatagttgggacagaaac------tgtacagcccatcggcctaaactatttactctctggccctttaagagaaaga-tttccagcccctgGTCTAGT----
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       480307 198 +   4116138 AAACTGCTGTG--cacctgtttctgtacat----ttttatgggaaca--caggcacaccacttgttcacacatcatctctggctgcttttgctctacagtggcagagctgagtagttgagacagaaactgtacatgtacagcccatcggcctaaactatttactctctggccctttaagagaaaga-tttccagcccctgGTCTAGT----
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53911030 192 +  58131712 AAACTGCTGTG--cacttgtttctgtacat----ttttatgggaaca--caggcacaccacttgttcacacatcatctctggctgcttttgctctacagtggcagagctgagtagttgggacagaaac------tgtacagcccatcggcctaaactattttttctctggccctttaagagaaaga-tttccagcccctgGTCTAGT----
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       532547 192 -   3636681 AAACTGCTGTG--cacctgtttctgtacat----ttttatgggaaca--caggcacaccacttgttcacacatcatctctggctgcttttgctctacagtggcagagctgagtggttgggacagaaac------tgtacagcccatcggcctaaactatttactctctggccctttaagagaaaga-tttccagcccctgGTCTAGT----
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       510853 189 -   4457520 AAACTGCTGTG--cacctgtttttaca-------tttcgtgggaaca--caggcacaccgcttgttcacacagcacctctggctgcttttgctctgcagtggcggagctgagtagttgggacagaaac------tgtacagcccatcagcccgaactatttactctctggccctttaagagaaaga-tttccagcccctgGTCTAGT----
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154541235 187 - 158406734 AAGCTGCCAAG--CTcctgtttttgtaaat----ttttaagggcaca--caggcacaacacttgttcacacctcatctccagctgcttttgctctacaggggcagagctgagtagttgggacagaaac------tgtaccgcctatcagc-----ctatttactattaggccctttaagagaaaga-tttccagcacctgGTATAGC----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             373947 186 -   2682657 GAActgccgcg--ct-ctgtttctgtaaat----ttttaagggaaca--caggcacaacacttgttcacacctcacctgcagctgcttttgctcttcagtggcagagctgagtcgttgggacagaaac------tgtacggcccatcagc-----ctgtttactgtctggccctttaagagaaaga-tttccagcacctgATCTAGC----
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       399588 187 -   2086007 aaactgccatg--cccctggttttgtaaat----ttttaagggaaca--caggcacaacacttgttcacacctcatctccagctgcttttgctctacagtggcagagctgagtagttcggacagaaac------tgtacagcccatcagc-----ctgtttactatctggacctttaagagaaaga-tttccagcacctgGTCTAGC----
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       460639 187 +   3831555 AAACTGCCATG--CTcctgtttttgtaaat----ttttaagggaaca--caggcacaacacttgttcacacctcatttccagctgcttttgctctacagtgtcagagctgagtagttgggacagaaac------tgtacagcccatcagc-----ctatttaccatctggacctttaagagaaaga-tttccagcacctgGTCTAGC----
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13532109 197 +  16154928 aaactactgtga-catctgtttttgtaaataaaattttatgggaagg--caggcataccgcttgtttacatgtcatctttggctgcttttgctctacaatggcagagttgagtagttgtgacacatac------catatggcctgtaagcctaaactatttactgtctggccctttaagagaaaga-tttcccacccctgGTCTAGT----
i proCoq1.NW_012148396v1    I 45 I 59
s otoGar3.GL873689             484497 190 +   3845361 -AACT--CATGG-cacttggttttgtaaataacatttt-ttggaagg--caggcgtctc-cttgtttacatatcatctctggctgcttttgctctgt--tggcacagtccagtacctgtcatacagac------ccggtggcccataggcctaaactgttcactgtctttctcttgaagagaaaga-tttcctaccgctgGTGTAGC----
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60059777 183 -  91889043 AGGTTACCATGGCCACCTGTTTTTATATA-----Ctttatggaaacagccatgc---ccacttgtttacatgtcatcg-----------tactcttcagtggcagagttgagtagctgtgatagacat------gg---ggctggtcaggtggaagtgtttactctttgtcccttcaagagaaagattttccggctcctgATCAAGAGGGT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782   7 + 145441459 I
e dasNov3.JH562051             443985 160 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=976134.000000
s hg38.chr15_KI270851v1_alt    211979 123 +    263054 TAGTTGAAATTGTCACTGAAGAAAACCAGCACATGCAAATGCTGTGAGTACCTGGATGAGTACCTAGA-TGTGTGAAGTGGGCTTGA-GCGCAGTGGATCTCCCTGGGGCTGTGTCAAACAG--AGT
s panPan2.chr15              74132540 123 -  99763055 TAGTTGAAATTGTCACCGAAGAAAACCAGCACATGCAAATGCTGTGAGTACCTGGATGAGTACCTAGA-TGTGTGAAGTGGGCTTGA-GGGCAGTGGATCTCCCTGGGGCTGTGTCAAACAG--AGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       176783 123 -    281578 TAGTTGAAATTGTCACTGAAGAAAACCAGCACATGCAAATGCTGTGAGTACCTGGATGAGTACCTAGA-TGTGTGAAGTGGGCTTGA-GGGCAGTGGATCTCCCTGGGGCTGTGTCAAACAG--AGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71039122 124 + 121039945 TAATTGAAATTGTCACCGAAGAAAACCAGCACATGCAAATGCCGTGAGTACCTGGATGAGTACCTAGATTGTGTGAAGTGGGCTTGA-GGGCAGTGGATCTCTGTGGGGCTGTGTCAAACAG--AGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164347737 124 - 169600520 TAGCCGAAATTGTCACTGAAGAAAACCGGTACATGCAAATGCTGTGAGTGCCTTGATGAGTACCTAGATTGTATGCAGTGGGCTTCA-GGGCAGTGAATCTCCCTAGGGCTGTGTCAAACAG--AGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165669011 124 - 171882078 TAGCCGAAATTGTCACTGAAGAAAACCAGTACATGCAAATGCTGTGAGTGCCTTGATGAGTACCTAGATTGTGTGCAGTGGGCTTCA-GGGCAGTGAATCTCCCTAGGGCTGTGTCAAACAG--AGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       522268 124 +   2379783 TAGCCGAAATTGTCACTGAAGAAAACCGGTACATGCAAATGCTGTGAGTGCCTTGATGAGTACCTAGATTGTGTGCAGTGGGCTTCA-GGGCAGTGAATCTCCCTAGGGCTGTGTCAAACAG--AGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       480505 124 +   4116138 TAGCCGAAATTGTCACTGAAGAAAACCGGTACATGCAAATGCTGTGAGTGCCTCGATGAGTACCTAGATTGTGTGCAGTGGGCTTCA-GGGCAGTGAATCTCCCTAGGGCTGTGTCAAACAG--AGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53911222 124 +  58131712 TAGCCGAAATTGTCACTGAAGAAAACCGGTACGTGCAAATGCTGTGAGTGCCTCAATGAGTACCTAGATTGTGTGCAGTGGGCTTCA-GGGCAGTGAATCTCCCTAGGGCTGTGTCAAACAG--AGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       532739 124 -   3636681 TAGCCGAAATTGTCACTGAAGAAAACCAGTACATGCAAATGCTGTGAGTGCCTCAATGAGTACCTAGATTGTGTGCAGTGGGCTTCA-GGGCAGTGAATCTCCCTAGGGCTGTGTCAAACAG--AGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       511042 123 -   4457520 TAGTCGAAATTGTCACCGAAGAAAACCAGTACGTGCAAGTGCTTTGAGCGCCTGGATGAGAACCTAGATTGTGTGCAGTGGGCTTCA-GGGCAGTGAATCTCCC-GGGGCTGTGTCAAACAC--AGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154541422 123 - 158406734 TAGTTGAAATTTTCACCAAACGAAACCAGCACGTGCAAATGCTGTGAGTACCTGGCTGAGCACCTGGACTGTGTGAAGT-GGCTTCA-GGGCAGTGGATCTCCCTGGAGCTATGTCACACAG--CAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             374133 120 -   2682657 AAGTTGAAATTTTGACCAAAT---ACCAGCACATGCAAATGCTGCGAGTACCTGGCTGAGCACCTGGATTGTGTGAAGT-GGCTTCA-GGGCAGCGGGTCTCCCTGGGGCTGTGTCACACAG--CGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       399775 123 -   2086007 TAGCTGAAATTTTCACCAAACAAAACCAGCACGTGCAAATGCTGTGAGTACCTGGCTGAGCACCTGGATTGTGTGAAGT-GGCTTCA-GGGCAGTGGGTCTCCCTGGGGCTGCGTCACACAG--CGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       460826 123 +   3831555 TAGTTGAAATTTTCACCAAACAAAACCAGCACGTGCAAATGCTGTGAGTACCTGGCTGAGCACCTGGATTGTGTGAAGT-GGCTTCA-GGGCAGTGGATCTCCCTGGGGCTGTGTCACACAG--CGT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             484687  58 +   3845361 ---------------------------------------------------------------CTCAGTTGTGTGAAA--GGCGCCAGGGGCTCTGGATACCC--AGTGCTGTAGCAAAGGG--AGC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60059960  91 -  91889043 TAGTTGAAGTTGTCACT--AGCCAACCAGCAAACTCAAATGATG--------------------------------AGTGGGC-TCA-AGGCAATGGGACTCAGTGGGCCTGGGGCAAACAGGAAGT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782   7 + 145441459 I
e proCoq1.NW_012148396v1     13532306  59 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=1779628.000000
s hg38.chr15_KI270851v1_alt    212102 188 +    263054 CCTAAAGGCTGCACCTAAAG-CTACTCAT-----AACAGACAAAAAGCCATCACCCTGAGCACATGACACATTTGGAATTGGGGTCACTTAATGATCTCAACAAGGCTTAGCTGGAAAAGCTACAGCTAGAAATATGCACGTGGGATGTGTCTGTGTCAG--------GGGTTACTGAAGCCGTGAGTG---AACATGAAAGAGA
s panPan2.chr15              74132663 188 -  99763055 CCTAAAGGCTGCACCTAAAG-CTACTCAT-----AACAGACAAAAAGCCATCACCCTGAGCACACGACACATTTGGAATTGGGGTCACTTAATGATCTCAACAAGGCTTAGCTGGAAAAGCTACAGCTAGAAATATGCACGTGGGATGTGTCTGTGTCAG--------GGGTTACTGAAGCCGTGAGTG---AACACGAAAGAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       176906 188 -    281578 CCTAAAGGCTGCACCTAAAG-CTACTCAT-----AACAGACAAAAAGCCATCACCCTGAGCACATGACACATTTGGAATTCGGGTCACTTAATGATCTCAACAAGGCTTAGCTGGAAAAGCTACAGCTAGAAATATGCACGTGGGATGTGTCTGTGTCAG--------GGGTTACTGAAGCCGTGAGTG---AACACGAAGGAGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71039246 188 + 121039945 CCTAAAGGCTGCACCTAAAG-CTACTCAT-----AACAGACAAAAAGCCATCACCCTGAACACATGACACATTTGCAGTTGGGGTCATTTAATGATCTCAGTGAGGCTTAGCTGGAAAAGCTACAGCTAGAAATATGCACGTGGGATGTGTCTGTGTCAG--------GGGTTACTGAAGCCGTGAGTG---AACACGAAAGAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164347861 183 - 169600520 CCTAAAGGCTGCACCTAAAG-CTACTCAT-----AACAGATAAAGAGCCATCTCCCTGAGCACATAACACATTTGGAATTGGGGTCACTTAATGATCTCAACAAGGCTTAGCTAAAAAAGCTACAGCTAGAAATATGCACGTGGGATGTGTCTGTGTCGG--------GGTT---TGAAGCTGTGAGTG---AACATGAAAG--A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165669135 183 - 171882078 CCTAAAGGCTGCACCTAAAG-CTACTCAT-----AACAGACAAAAAGCCATCTCCCTGAGCACATAACACATTTGGAATTGGGGTCACTTAATGATCTCAACAAGGCTTAGCTAAAAAAGCTACAGCTAGAAATATGCACGTGGGATGTGTCTGTGTCGG--------GGTT---TGAAGCTGTGAGTG---AACATGAAAG--A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       522392 183 +   2379783 CCTAAAGGCTGCACCTAAAG-CTACTCAT-----AACAGACAAAGAGCCATCTCCCTGAGCACATAACACATTTGGAATTGGGGTCACTTAATGATCTCAACAAGGCTTAGCTAAAAAAGCTACAGCTAGAAATATGCACGTGGGATGTGTCTGTGTCGG--------GGTT---TGAAGCTGTGAGTG---AACATGAAAG--A
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       480629 181 +   4116138 CCTAAAGGCTGCACCTAAAG-CTACTCAC-----AACAGACAAAGAGCCATCTCCCTGAGCACATAACACATTTGGAATTGGGGTCACTTAATGATCTCAGCAAGGCTTAGCTAAAAAAGCTACAGCTAGAAATATGCACGTGGGATGTGTCTGTGTCGG--------GGTT---TGAAGC--TGAGTG---AACATGAAAG--A
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53911346 183 +  58131712 CCTAAAGGCTGCACCTAAAG-CTACTCAT-----AACAGACAAAGAGCCATTTCCCTGAGCACATAACACATTTGGAATTGGGGTCACTTAATGATCTCAACAAGGCTTAGCTAAAAAAGCTACAGCTGGAAATATGCACGTGGGATGTGTCTGTGTCGG--------GGTT---TGAAGCTGTGAGTG---AACATGAAAG--A
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       532863 183 -   3636681 CCTAAAGGCTGCACCTAAAG-CTACTCAT-----AACAGACAAAGAACCATCTCCCTGAGCACATAACACATTTGGAATTGGGGTCACTTAATGATCTCAACAAGGCTTAGCTAAAAAAGCTAGAGCTAGAAATATGCACGTGGGATGTGTCTGTGTCGG--------GGTT---TGAAGCTGTGAGTG---AACATGAAAG--A
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       511165 182 -   4457520 CCTAAAGGCTGCACCTAAAG-CTACTCCT-----AACAGACGAAAAGCCATCTCCCTGAGCACATAACACATTTGGAATTGGGGTCACTTAGTGATCTCAACAGGGCTTAGCTAGAAAAGCTACAGCTAGAAATATGCACGTGGGATGTGTCCGTGTCGG--------GGTT---TGAAGCTGTGAGTG---AACATGAAAG---
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154541545 187 - 158406734 CCTAAAGGCTGCACGCAAAG-CTACTCAT-----AACAGACAAAAAGCCATCACCCCGAGGACATGGCACATTTGGAATC-GGGTCACCTAATGATCTGAACAAGGCCTAGCTAGAAAACCTACAACTAGAAATATGCATATGGGATGTGTCTGTGTTGA--------GGGTTACTGGAGCTGTGAGTG---AGCAAGAAAGCAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             374253 154 -   2682657 CCTAAAGGCTGCATCTAAAG-CTACTCAT-----AACAGACAAAAAGCCATCACCCTGAGGACATAACACATTTGGAATTGGGGTCACTTAATGATCTGAACAAGGCCTA---------------------------------GGATGTGTCTGTGTTGA--------GGGTTACTGGAGCTGTGA-TT---AACAAGAAAGAAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       399898 188 -   2086007 ACTAAAGGCTGCACCTAAAG-CTACTCAT-----AACAGACAAAAAGCCATCGCCCTGAGGACATGACGCATTTGGAATTGGGGTCACTTAATGATCCGAACAAGGCCTAGCTAGAAAACCTACAACTAGAAATATGCATATGGGATGTGTCTGTGTTGA--------GGGTCACTGGAGCTGTGAGTG---AACAAGAAAGAAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       460949 188 +   3831555 CCTAAAAGCTGCACCTAAAG-CTACTCAT-----AACAGACGAAAAGCCATCACCCTGAGGACATGACACATTTGGAATTGGGGTCACTTAATGATCTGAACAAGGCCTAGCTAGAAAACCTACAACTAGAAATATGCATATGGGATGTGTCTGTGTTGA--------GGGTTACTGGAGCTGTGAGTG---AACAAGAAAGAAA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13532365 188 +  16154928 CCTAAAGGCCTCACCTAAAGCCCACTCAG-----AACAGACAAAACATCATCACCCTGACCACATGACACATTTGAAATTGGTGTCACTAAATGATTCGAACAAAGCTTAGTGGGAAAAGCCACAGT-AGAAATAGAAACTTGGGATGTGTCCATTGCAG--------GGGTTACTGAAGCAATTAGTA---AACAAGAAAGAGA
i proCoq1.NW_012148396v1    I 59 I 14
s otoGar3.GL873689             484745 175 +   3845361 CCTAAAGTCCTCACGGAAAGCCCCCTCAA-----AATAGACAAGACACCATTACCCTGAACACATGACACCTGTGGAATTAGTGTCGCTATGTGATTTGAGTAAGGCTCAGTGGGAAAAGCCAGAGC-AGGAATGCAGACTTGGGAGGTAGCCATTGTAG--------GGG-------------CAGTG---AGTGTGGAAGATG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60060051 195 -  91889043 GCTAAAGCTT--ACCCAAAG-CTACTCAGATTAAAATAGGCGAAAAGATTTTACC------ACACAACATATTTGGGATTGGTGTCAATTTATGTTCTGAACAAAAGTTAGTAGGAAAAGCCAGGGCTAAACATACAAACTTGAGA-GTGTCCATAGAAGTGGAAGGAGGGTTTCTAAAGCAGTGAGTATGCATCAAGAAAGAGA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782   7 + 145441459 I
e dasNov3.JH562051             443985 160 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=27334.000000
s hg38.chr15_KI270851v1_alt    212290 4 +    263054 --GTGT
s panPan2.chr15              74132851 4 -  99763055 --GTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       177094 4 -    281578 --GTGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71039434 4 + 121039945 --GTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164348044 4 - 169600520 --GTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165669318 4 - 171882078 --GTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       522575 4 +   2379783 --GTGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       480810 4 +   4116138 --TTGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53911529 4 +  58131712 --GTGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533046 4 -   3636681 --GTGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       511347 3 -   4457520 ---TGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154541732 4 - 158406734 --GTGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             374407 4 -   2682657 --GCGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400086 4 -   2086007 --GTGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       461137 4 +   3831555 --GTGT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             484920 4 +   3845361 --GTGT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60060246 4 -  91889043 AGGT--
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782 7 + 145441459 I
e proCoq1.NW_012148396v1     13532553 14 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=35175.000000
s hg38.chr15_KI270851v1_alt    212294 4 +    263054 GTAg--
s panPan2.chr15              74132855 4 -  99763055 GTAg--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       177098 4 -    281578 GTAg--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71039438 4 + 121039945 GTAg--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164348048 4 - 169600520 GTAg--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165669322 4 - 171882078 GTAg--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       522579 4 +   2379783 GTAg--
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       480814 4 +   4116138 GTAg--
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53911533 4 +  58131712 GTAg--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533050 4 -   3636681 GTAg--
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       511350 4 -   4457520 GTAg--
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154541736 4 - 158406734 GTAg--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             374411 4 -   2682657 GTAg--
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400090 4 -   2086007 GTAg--
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       461141 4 +   3831555 GTAg--
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60060250 4 -  91889043 --AGAA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782 7 + 145441459 I
e proCoq1.NW_012148396v1     13532553 14 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e otoGar3.GL873689             484924 0 +   3845361 C
e panTro5.chr15               9597515 12605 +  83230942 I

a score=2212064.000000
s hg38.chr15_KI270851v1_alt    212298 297 +    263054 gtcaggcatggtggcttacgcctgtaatcccaacactttgggatgccgaggcgggtgga----------tcaggagttggagaccagcctggccaacatggtgaaatctaatcaacagcctggccccatctatactaaaaatacaaaaattagctaggcgtggtagcatgtgcctgtagtcccagctacagggaaggctgatgcaggagaatcacttgagcc-aggaggcagaggttgcagt--ttgccaaga--ttg-tgccactgcactccagcctgggcaacagagtgagactccatctcaagaaaaaga
s panPan2.chr15              74132859 307 -  99763055 gccaggcatggtggcttaaacctgtaatcccaacactttgggatgccaaggcgggtggatcacctgaggtcaggagttggagaccagcctggccaacatggtgaaatctaatcaacagcctggccccatctatactaaaaatacaaaaattagccaggcgtggtagcatgtgcctgtagtcccagctacagggaaggctgatgcaggagaatcgcttgagcc-aggaggcagaggttgcagt--gagccaaga--ttg-tgccactgcactccagtctgggcaacagagtgagactccatctcaagaaaagga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       177102 291 -    281578 gtcaggcatggtggcttacgcctgtaatcccaacactttgggatgccgaagcgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaac----------------ccccatctatattaaaaatacaaaaattagctgggcgtggtggcgtgtgcctgtagtcccagctactgggaaggctgatgcaggagaatcgcttgagcc-aggaggcagaggttgcagt--ttgccaaga--ttg-tgccactgcactccagcctgggcaacagagtgaggctccatctcaagaaaaaga
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71039442 290 + 121039945 gccaggcatggtggctcacacctgtaatcccaacactttgggatgctgaggtgggtggatcacgtgaggtcaggagttcgagaccagcctggccaacatggtgaaa-----------------ccccatctatactaaaaatacaaaaattagccgggtgtggtggtgtgtgcctgtagtcccagctaccgggaaggctgatgcaggagaatcgcttgagcc-aggaggcagaggttgcagt--gagccaaga--ttg-tgccactgcactccagcctgggcaacagagtgagactccatctcaagaaaaaga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164348052 295 - 169600520 gccaggcatggtggctcactcctgtaatcccgacactttgagaggccaaggcgggcggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaa-----------------ccccatctgtactaaaaatagaaaaattagcctggcgtggtggtgtgtgcctgtattcccagctaccgggaaggctgatgcaggagaattgcttcagcc-aggaggccagagttgcagttggagcttggaatttgttgccactgcactccagcctgggcaacagagtgagactccatctcaagaaaaaga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165669326 290 - 171882078 gccaggcatggtggctcactcctgtaatcccaacactttgagaggccaaggcgggccgatcacctgaggtcaggagtttgagaccaggctggccaacatggtgaaa-----------------ccccatctgtactaaaaatagaaaaattagcctggcgtggtggtgtgtgcctgtattcccagctaccgggaaggctgatgcaggagaattgcttcagcc-aggaggcagaggttgcagt--gagctgaga--ttg-tgccactgcactccagcctgcgcaacagagtgagactccatctcaagaaaaaga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       522583 290 +   2379783 gccaggcatggtggctcactcctgtaatcccaacactttgagaggccaaggcgggcggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaa-----------------ccccatctgtactaaaaatagaaaaattagcctggcgtggtggtgtgtgcctgtattcccagctaccgggaaggctgatgcaggagaattgcttcagcc-aggaggcagaggttgcagt--gagctgaga--ttg-tgccactgcactccagcctgggcaacagagtgagactccatctcaagaaaaaga
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       480818 290 +   4116138 gccaggcatggtggctcactcctgtaatcccaacactttgggaggccaaggcgggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaa-----------------ccacatctgtactaaaaatagaaaaattagcctggcgtggtggtgtgtgcctgtattcccagctaccgggaaggctgatgcaggagaattgcttcagcc-aggaggcagaggttgcagt--gagttgaga--ttg-tgccactgcactccagcctgggcaacagagtgagactccatctcaagaaaaaga
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53911537 290 +  58131712 gccaggcatggtggctcactcctgtaatcccaacactttgggaggccaaggcgggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaa-----------------ccccatctgtactaaaaatagaaaaattagcctggcgtggtggtgtgtgcctgtattcccagctaccgggaaggctgatgcaggagaattgctttagcc-aggagacagaggttgcagt--gagctgaga--ttg-tgccactgcactccagcctgggcaacagagtgagattccatctcaagaaaaaga
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533054 290 -   3636681 gccaggcatggtggctcactcctgtaatcccaacactttgggaggccaaggcgggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaa-----------------ccccatctgtactaaaaatagaaaaattagcctggcgtggtggtgtgtgcctatattcccagctaccggaaaggctgatgcaggagaattgcttcagcc-aggaggcagaggttgcagt--gagctgaga--ttg-tgccactgcactccagcctgggcaacagagtgagactccatctcaagaaaaaga
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       511354 289 -   4457520 gccgggcgcggtggctcactcctgcaatcccaacgctttgggaggccgaggcgggtggat-acctgaggtcaggagtttgagaccagcctggccaacatggtgaaa-----------------ccccatctgtactaaaaatagaaaaattatcctggcgtggtggcatgtgcctgtagtttcagctaccaggaaggctgatgcaggagaattgcttgagcc-aggaggcagaggttgcagt--gagccgaga--ttg-tgccactgcgctccagcctgggcaacagagtgagactccatctcaagaaaaaga
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154541740 273 - 158406734 gccaggcatggtggctcacacctgtaacgccagagctttgggagaccaaggtgagtggatcagcttaagtcaggagttccag-------------acatggtgtaa-----------------ccctgtctatactaacaatacaaaaattagc-aggcgtgttgggatgtgcctatagttccagctactgggaaggctgaagctggagaactgcttgagcctgggaggcagaggttgcagt--gagctgaga--ttg-cgccattgaactctatcctgggcatcggagcgaggctccatctcaaaaa----a
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             374415 286 -   2682657 gccagccaaagtggctcacacctgtaattccagagctttgggagaccaaggtgggtggatcagctaaagtcaggagctcgagaccaacctggccaacatggtgtaa-----------------ccctgtctatactaacaatacaaagattagc-aggcgtgttgggttgtgcctgtagtcccagctgctgggaaggctgaagctggagaattgcttgagcctgggaggcagaggttgcagt--gagctgaga--ttg-tgacattgaactctagcccgggcagcagagtgagactccacctcaaaaa----a
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400094 279 -   2086007 gccagccgtagtggctcacacctgtaattccagagctttgggaagccaaggtgggtggatcagctgaagtcagtagttcgagaccagcctggccaacatggtgtaa-----------------ccctgcctatactaacaatacaaaaattagc-aggcgtgttgggatgtgcctgtagtcccagctactgggaaggccgaagctggagaatggcacaatctcggca-------gttgcagt--gagccaaga--ttg-tgccattgaactctagcctgggcaacagagtaagactctatctcaaaaa----a
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       461145 286 +   3831555 gccaggcatagtggctcatacctgtaattccacagctttgggaggccaagctgggtggatcagctgaagtcaggagttcgagaccagcttggccaacatggtgtaa-----------------ccctgtctgtactaacaatacaaaaattagc-aggcgtgttgggatgtgcctatggtcccagctactgggaaggctgaagctggagaattgattgagcctgggaggcagaggttgcagt--gagctgaga--ttg-tgccattgaactctagcctgggcaacagagtgagactccatctcgaaaa----a
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56156782   7 + 145441459 I
e proCoq1.NW_012148396v1     13532553  14 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e canFam3.chr3               60060254   0 -  91889043 C
e otoGar3.GL873689             484924   0 +   3845361 C
e panTro5.chr15               9597515 12605 +  83230942 I

a score=42930.000000
s hg38.chr15_KI270851v1_alt    212595 4 +    263054 gaaa
s panPan2.chr15              74133166 4 -  99763055 gaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       177393 4 -    281578 gaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71039732 4 + 121039945 gaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164348347 4 - 169600520 gaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165669616 4 - 171882078 gaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       522873 4 +   2379783 gaaa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       481108 4 +   4116138 gaaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53911827 4 +  58131712 gaaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533344 4 -   3636681 gaaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       511643 4 -   4457520 gaaa
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542013 4 - 158406734 gaaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             374701 4 -   2682657 gaaa
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400373 4 -   2086007 gaaa
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       461431 4 +   3831555 gaaa
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             484924 4 +   3845361 GAGA
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56156782 7 + 145441459 I
e proCoq1.NW_012148396v1     13532553 14 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e canFam3.chr3               60060254 0 -  91889043 C
e panTro5.chr15               9597515 12605 +  83230942 I

a score=52777.000000
s hg38.chr15_KI270851v1_alt    212599 6 +    263054 gaaTCA
s panPan2.chr15              74133170 4 -  99763055 gaaT--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       177397 5 -    281578 -aaTCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71039736 6 + 121039945 gaaTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164348351 6 - 169600520 gaaTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165669620 6 - 171882078 gaaTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       522877 6 +   2379783 gaaTCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       481112 6 +   4116138 gaaTCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53911831 6 +  58131712 gaaTCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533348 6 -   3636681 gaaTCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       511647 6 -   4457520 gaaTCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542017 6 - 158406734 gaaTCG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             374705 6 -   2682657 gaaTCG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400377 6 -   2086007 gaaTCG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       461435 6 +   3831555 gaaTCA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             484928 6 +   3845361 GAATTG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60060254 6 -  91889043 GAACTA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782 7 + 145441459 I
e proCoq1.NW_012148396v1     13532553 14 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=824231.000000
s hg38.chr15_KI270851v1_alt    212605 78 +    263054 GACCAAGTGCAGAAATCTGGGAAGGAGCAT--------TTGCTGGCTCT----------AAGAGACAGATGCACTAATGAAG----GACAGAGACCAAAA--
s panPan2.chr15              74133174 75 -  99763055 ---CAAGTGCAGAAATCTGGGAAGGAGCAT--------TTGCTGGCTCT----------AAGAGACAGATGCACTAATGAAG----GACAGAGACCAAAA--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       177402 78 -    281578 GACCAAGTGCAGAAATCTGGGAAGGAGCAT--------TTGCTGGCTCT----------AAGAGACAGATGCACTAATGAAG----GACAGAGACCAAAA--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71039742 78 + 121039945 GACCAAGTGCAGAAATCTGGGAAGGAGCAT--------TTGCTGGCTCT----------AAGAGACAGATGCACTAATGAAG----GACAGAGGCCAAAA--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164348357 82 - 169600520 GACCAAGTGCAGAAATCTGGAAAGGAGCAT--------TTGTTGGCTCT----------AAGAGACAGATGCCCTAATGAAGGACAGACAGAGACCAAAA--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165669626 82 - 171882078 GATCAAGTGCAGAAATCTGGAAAGGAGCAT--------TTGTTGGCTCT----------AAGAGACAGATGCCCTAATGAAGGACAGACAGAGACCAAAA--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       522883 82 +   2379783 GACCAAGTGCAGAAATCTGGAAAGGAGCAT--------TTGTTGGCTCT----------AAGAGACAGATGCCCTGATGAAGGACAGACAGAGACCAAAA--
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       481118 82 +   4116138 GACCAAGTGCAGAAATCTGGAAAGGAGCAT--------TTGTTGGCTCT----------AAGAGACAGATGCCCTAATGAAGGACAGACAGAGACCAAAA--
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53911837 82 +  58131712 GACCAAGTGCAGAAATCTGGAAAGGAGCAT--------TTGTTGGCTCT----------AAGAGACAGATGCCCTAATGAAGGACAGACAGAGACCAAAA--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533354 82 -   3636681 GACCAAGTGCAGAAATCTGGAAAGGAGCAT--------TTGTTGGCTCT----------AAGAGACAGATGCCCTAATGAAGGACAGACAGAGACCAAAA--
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       511653 82 -   4457520 GACCAAGTGCAGAAATCTGGAAAGGAGCAT--------TTGTTGGCTCT----------AAGAGACAGATGCCCTAATGAAGGACAGACAGAGACTAAAA--
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542023 78 - 158406734 GACCAAGTACAGAAATCTGGGAAGGAGCAT--------TTGCTGGCTCT----------GAGAGACAGCGGCCCTAATGAAG----GACAGAGATGAAAA--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             374711 78 -   2682657 GACCAAGTACAGAAATCTGGGATGGAACAT--------TTGCTGGCTCT----------AAGAGATGGCTACACTATTGAAG----GACAGAGATCAAAA--
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400383 78 -   2086007 GACCAAGTACAGAAATCTGGGAAGGAGCAT--------TTGCTGGCTCT----------AAGAGACGGCTGCACTAATGAAG----GACAGCTATCAAAA--
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       461441 78 +   3831555 GACCAAGTACAGAAATCTGGGAAGGAGCAT--------TTGCTGGCTCT----------AAGAGACGGCTGCAGTAATGAAG----GACAGAGATCAAAA--
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13532567 78 +  16154928 GACCAAGGACAGAAATCTGAGAAGCAGCAT--------TTGTTGGCTCT----------AAGAGACAGAGGAACTAATGAAG----GACAGAGACCAAAA--
i proCoq1.NW_012148396v1    I 14 I 31
s otoGar3.GL873689             484934 61 +   3845361 GACCAGGGGCAGAAATCTGAGA-------------------------CT----------AGGAGACCGATGAACTAATGAAG----GACAGAGACCAAAA--
i otoGar3.GL873689          C 0 I 1
s canFam3.chr3               60060260 95 -  91889043 GACCAAAGGCAAAAATCAGGGA-GTAGCTTTGTTGTTGTTGTTGTCTCTGAGGTCTCTAAAGAGACAGATGAACTAATAAAG----G--AGATACCAAAGAA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e dasNov3.JH562051             443985 160 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=113718.000000
s hg38.chr15_KI270851v1_alt    212683 13 +    263054 GCAGGCAGT-GAAA
s panPan2.chr15              74133249 13 -  99763055 GCAGGCAGT-GAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       177480 13 -    281578 GCAGGCAGT-GAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71039820 13 + 121039945 GCAGCCAGT-CAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164348439 13 - 169600520 GCAGGCAGT-GAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165669708 13 - 171882078 GCAGGCAGT-GAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       522965 13 +   2379783 GCAGGCAGT-GAAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       481200 13 +   4116138 GCAGGCAGT-GAAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53911919 13 +  58131712 GAAGGCAGT-GAAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533436 13 -   3636681 GCAGGCAGT-GAAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       511735 13 -   4457520 GCAGGCAGT-GAAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542101  9 - 158406734 GCAGGAAGT-----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             374789 13 -   2682657 GCAGGAAGT-GAAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400461 13 -   2086007 GCAGGAAGT-GAAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       461519 13 +   3831555 GCAGGAAGT-GAAA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             484996 14 +   3845361 GCAAGGAGTGGGAA
i otoGar3.GL873689          I 1 C 0
s canFam3.chr3               60060355 13 -  91889043 CCAGGGAGT-GGAA
i canFam3.chr3              C 0 I 9
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13532645 31 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=72737.000000
s hg38.chr15_KI270851v1_alt    212696 8 +    263054 GTGGTTTA
s panPan2.chr15              74133262 8 -  99763055 GTGGTTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       177493 8 -    281578 GTGGTTTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71039833 8 + 121039945 GTGGTTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164348452 8 - 169600520 GTGGTTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165669721 8 - 171882078 GTGGTTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       522978 8 +   2379783 GTGGTTTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       481213 8 +   4116138 GTGGTTTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53911932 8 +  58131712 GTGGTTTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533449 8 -   3636681 GTGGTTTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       511748 8 -   4457520 GTGGTTTA
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             374802 8 -   2682657 GTGGCTTA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400474 8 -   2086007 GTGGTTTA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       461532 8 +   3831555 GTGGTTTA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             485010 8 +   3845361 ATTGTTTA
i otoGar3.GL873689          C 0 I 2
e mm10.chr7                  56156782 7 + 145441459 I
e proCoq1.NW_012148396v1     13532645 31 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e canFam3.chr3               60060368 9 -  91889043 I
e panTro5.chr15               9597515 12605 +  83230942 I
e calJac3.chr6              154542110 0 - 158406734 C

a score=327124.000000
s hg38.chr15_KI270851v1_alt    212704 56 +    263054 GAGTCTAGT---------TC-Cttttttttttttttttttgagatggagtctcgctctgttgccag
s panPan2.chr15              74133270 47 -  99763055 GAGTCTAAT---------TC-C---------tttttttttgagatggagtctcgctctgttgccag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       177501 52 -    281578 GAGTCTAGt---------tt-t----tttttttttgttttgagatggagtctcgctctgtcaccag
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71039841 53 + 121039945 GAGTCTAGt---------tc-t---tttttttctttttttgagatggagtctcgctctgtcgccAG
i nomLeu3.chr6              C 0 M 418
s rheMac8.chr7              164348460 49 - 169600520 GAGTCTAGt---------tc-t-------ttttttttcttgagttggagtttccctctgttgccag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165669729 48 - 171882078 GAGTCTAGt---------tc---------tttttttttttgagttggagtttccctctgttgccag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       522986 50 +   2379783 GAGTCTAGt---------tctt-------ttttttttttttagttggagtttccctctgttgccag
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       481221 49 +   4116138 GAGTCTAGt---------tc-t-------tttttttttttgagttggaatttccctctgttgccag
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53911940 49 +  58131712 GAGTCTAGt---------tc-t-------tttttttttttgagttggagtttccctctgttgccag
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533457 49 -   3636681 GAGTCTAGt---------tc-t-------tttttttttttgagttggagtttgcctctgttgccag
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       511756 48 -   4457520 GAGTCTAGt---------tc---------tttttttttttgagttggagtttccctctgttgccag
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542110 52 - 158406734 GAGTCTAGC---------tt-t----tttttctctcttttgagatggagtctcactctgtcaccag
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             374810 61 -   2682657 GAGTCTAGCttttttttttt-t----tttttttctcttttgagatggagtctcgctctgtcgccag
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400482 52 -   2086007 GAGGCTAGC---------TG-t----tttttttctcttttgagatggagtctcgctctgtcgccag
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       461540 51 +   3831555 GAGTCTAGC----------t-t----tttttttctcttttgagatggagtctcgctctgtcaccag
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13532645 31 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e canFam3.chr3               60060368  9 -  91889043 I
e otoGar3.GL873689             485018  2 +   3845361 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=214640.000000
s hg38.chr15_KI270851v1_alt    212760 29 +    263054 gctggagtgcagtggcgtgatcttggctc
s panPan2.chr15              74133317 29 -  99763055 gctggagtgcagtggcgtgatcttggctc
i panPan2.chr15             C 0 I 23
s gorGor5.CYUI01000141v1       177553 29 -    281578 gctggagtatggtggtgtgatattggctc
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164348509 29 - 169600520 gctggagtgcagtggcgtgatctcggctc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165669777 29 - 171882078 gctggagtgcagtggcgtgatctcggctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       523036 29 +   2379783 gctggagtgcagtggcgtgatctcggctc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       481270 29 +   4116138 gctggagtgcagtggcgtgatctcggctc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53911989 29 +  58131712 gctggagtgcggtggcgtgatctcggctc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533506 29 -   3636681 gctggagtgcagtggcgtgatctcggctc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       511804 29 -   4457520 gctggagtgcagtggcgtgatctcggctc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542162 29 - 158406734 gctggagtgcagtgacgcgatcttggctc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             374871 29 -   2682657 gctggagtgcagtgatgtgatcttggctc
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400534 29 -   2086007 gctggagtgcagtgacgcgatcttcactc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       461591 29 +   3831555 gctggagcgcaatgacgcaatcttggcct
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13532645 31 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e canFam3.chr3               60060368  9 -  91889043 I
e otoGar3.GL873689             485018  2 +   3845361 I
e nomLeu3.chr6               71039894 418 + 121039945 M
e panTro5.chr15               9597515 12605 +  83230942 I

a score=211459.000000
s hg38.chr15_KI270851v1_alt    212789 41 +    263054 actgcaacctccaactccctggttcaagcaattctcctgcc
s gorGor5.CYUI01000141v1       177582 41 -    281578 gctgcaacctccaactccctggttcaagcagttctcctgcc
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164348538 19 - 169600520 actgcaacctccaactctc----------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165669806 41 - 171882078 actgcaacctccaactccctggttctagcaattctcctgcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       523065 41 +   2379783 actgcaagctccacctcccgggttcacgccattctcctgcc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       481299 41 +   4116138 actgcaacctccaactccctggttcaagtaattctcctgcc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53912018 41 +  58131712 actgcaacctccaactccctggttcaagcaattctcctgcc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533535 41 -   3636681 actgcaacctccaactccctggttcaagcaattctcctgcc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       511833 41 -   4457520 actgcaacctccaactccctggttcaagcacttctcttgcc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542191 41 - 158406734 attgcaacgtccgcctccctggttcaagcgattttcctgcc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             374900 41 -   2682657 attgcaacctctgcctccctggttcaagcgattttcctgcc
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400563 41 -   2086007 attgcaacttctgcctctctggttcaagcgattttcctgcc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       461620 41 +   3831555 attgcaacctctgccttcctggttcaagcgattttcctgcc
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13532645 31 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e canFam3.chr3               60060368  9 -  91889043 I
e otoGar3.GL873689             485018  2 +   3845361 I
e nomLeu3.chr6               71039894 418 + 121039945 M
e panPan2.chr15              74133346 23 -  99763055 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=235244.000000
s hg38.chr15_KI270851v1_alt    212830 57 +    263054 ttagccttgcgagtagctgggattacaggcacgcaccaccatgcccagctaattttt-----
s gorGor5.CYUI01000141v1       177623 52 -    281578 tcagccttgcgagtagctaggactacaggcacgcaccaccacgcccagctaa----------
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164348557 50 - 169600520 --agccttgccagtatctgggattacaggcacgcagcaccacgcccagctaa----------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165669847 52 - 171882078 tcagccttgccagtagctgggattataggcacgcagcaccacgcccagctaa----------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       481340 52 +   4116138 tcagccttgccaatagctgggattacaggcatgcaccaccacgcccagctaa----------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53912059 52 +  58131712 tcagccttgccagtagctgggatttcaggcacgcaccaccacgcccagctaa----------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533576 52 -   3636681 tcagccttgccagtagctgggattacaggcacgcagcaccacgcccagctaa----------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       511874 52 -   4457520 tcagccttgccagtagctgggattataggcacgcactaccaggcccagctaa----------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542232 57 - 158406734 tcagcctcccaagtagctgggactacaggcacacgccaccacatccagctaa-----ttttt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             374941 57 -   2682657 tcagcttcccaagtagctgggactacaggcacataccaccacatccagctaa-----ttttt
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400604 57 -   2086007 tcagcctcccaagtagctgggactaaaggcacacgccaccacatccagctaa-----ttttt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       461661 57 +   3831555 tcagcttcccaagtagctgggactacaggcacatgccaccacatccagctaa-----ttttt
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13532645 31 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e canFam3.chr3               60060368  9 -  91889043 I
e otoGar3.GL873689             485018  2 +   3845361 I
e nomLeu3.chr6               71039894 418 + 121039945 M
e panPan2.chr15              74133346 23 -  99763055 I
e panTro5.chr15               9597515 12605 +  83230942 I
e macNem1.NW_012011934v1       523106  0 +   2379783 C

a score=-2776.000000
s hg38.chr15_KI270851v1_alt    212887 9 +    263054 ttttttttt--
s gorGor5.CYUI01000141v1       177675 1 -    281578 --------t--
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164348607 3 - 169600520 --------tAt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165669899 3 - 171882078 --------tAt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       481392 3 +   4116138 --------tAt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53912111 3 +  58131712 --------tAt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533628 3 -   3636681 --------tAt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       511926 3 -   4457520 --------CAt
i colAng1.NW_012115278v1    C 0 C 0
e mm10.chr7                  56156782 7 + 145441459 I
e proCoq1.NW_012148396v1     13532645 31 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e canFam3.chr3               60060368 9 -  91889043 I
e aotNan1.NW_018503298v1       461718 0 +   3831555 C
e otoGar3.GL873689             485018 2 +   3845361 I
e cebCap1.NW_016107707v1       400661 0 -   2086007 C
e nomLeu3.chr6               71039894 418 + 121039945 M
e panPan2.chr15              74133346 23 -  99763055 I
e panTro5.chr15               9597515 12605 +  83230942 I
e macNem1.NW_012011934v1       523106 0 +   2379783 C
e saiBol1.JH378292             374998 0 -   2682657 C
e calJac3.chr6              154542289 0 - 158406734 C

a score=223275.000000
s hg38.chr15_KI270851v1_alt    212896 77 +    263054 ttttttttttgagaccgagtcttggtctgtcgcccaggctggagtgcagtggcgtgatctcggctcactgcaagcta
s gorGor5.CYUI01000141v1       177676 77 -    281578 ttttttttttgagactgagtcttggtctgtcgcccaggctggagtgcagtggcacgatctcggctcactgcaagctc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71040312 77 + 121039945 ttttttttttgagactgagcctcggtctgtcgcccaggctaaagtgcagtggcacgttctcagctcactgcaagctc
i nomLeu3.chr6              M 418 C 0
s rheMac8.chr7              164348610 77 - 169600520 ttgtttttttgagatggagtctcactttgttggccaggctggagtgcagtggcgtgatctcagctcactgcaagccc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165669902 77 - 171882078 ttgtttttttgagatggagtctcactttgttggccaggctggagtgcagtggcgtgatctcagctcactgcaagccc
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       481395 77 +   4116138 ttgtttttttgagacggagtctcactttgttggccaggctggagtgcagtggcgtgatctcagctcactgcaagctc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53912114 77 +  58131712 ttgtttttttgagacggagtctcactttgttggccaggctggagtgcagtggcgtgatctcagctcactgcaagctc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533631 77 -   3636681 ttgtttttttgagacggagtctcattttgttggccaggctggagtgcagtggcgtgatctcagctcactgcaagccc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       511929 77 -   4457520 ttgtttttttgagacggagtctcactttgttggccaggctggaatgcagtggcgtgatctcagctcactgcaagctc
i colAng1.NW_012115278v1    C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13532645 31 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e canFam3.chr3               60060368  9 -  91889043 I
e aotNan1.NW_018503298v1       461718  0 +   3831555 C
e otoGar3.GL873689             485018  2 +   3845361 I
e cebCap1.NW_016107707v1       400661  0 -   2086007 C
e panPan2.chr15              74133346 23 -  99763055 I
e panTro5.chr15               9597515 12605 +  83230942 I
e macNem1.NW_012011934v1       523106  0 +   2379783 C
e saiBol1.JH378292             374998  0 -   2682657 C
e calJac3.chr6              154542289  0 - 158406734 C

a score=108786.000000
s hg38.chr15_KI270851v1_alt    212973 30 +    263054 cgcctcccaggttcatgccattcttctgtg
s panPan2.chr15              74133369 30 -  99763055 cgcctcccaggttcatgccattctcctgtg
i panPan2.chr15             I 23 C 0
s gorGor5.CYUI01000141v1       177753 30 -    281578 cgcctcccaggttcatgccattctcctgtg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71040389 30 + 121039945 cgcctcctgggttcatgccattctcctgtg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164348687 30 - 169600520 cacctcccgggttcacgccattctcctgcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165669979 30 - 171882078 cacctcccgggttcacgccattctcctgcc
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       481472 30 +   4116138 cacctcccgggttcacaccattctcctgcc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53912191 30 +  58131712 cacctcctgggttcacgccattctcctgcc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533708 30 -   3636681 cacctcccgggttcacgccattctcctgcc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       512006 30 -   4457520 cgcctcccgggttcatgccattctcctgcc
i colAng1.NW_012115278v1    C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13532645 31 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e canFam3.chr3               60060368  9 -  91889043 I
e aotNan1.NW_018503298v1       461718  0 +   3831555 C
e otoGar3.GL873689             485018  2 +   3845361 I
e cebCap1.NW_016107707v1       400661  0 -   2086007 C
e panTro5.chr15               9597515 12605 +  83230942 I
e macNem1.NW_012011934v1       523106  0 +   2379783 C
e saiBol1.JH378292             374998  0 -   2682657 C
e calJac3.chr6              154542289  0 - 158406734 C

a score=266896.000000
s hg38.chr15_KI270851v1_alt    213003 59 +    263054 tcagcctcccaagtagctgggactacaggtgcccaccaccatgcccggctaattttttt
s panPan2.chr15              74133399 59 -  99763055 tcagcctcccaagtagctgggactacaggcgcccgccaccatgcccagctaatgttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       177783 58 -    281578 tcagcctcccaagtagctgggactacaggcgcccgccaccatgcccagctaatg-tttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71040419 58 + 121039945 tcagcctcccaagtagctgggactacaggtgcccaccaccatgcccggctaagg-tttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164348717 58 - 169600520 tcagcctcccgagtagctgggactacaggtgcccgccaccacacctggctaatt-tttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165670009 58 - 171882078 tcagcctcccgagtagctgggactacaggtgcccgccaccacacctggctaatt-tttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       523106 58 +   2379783 tcagcctcccgagtagctgggactacaggtgcccgccatcacacctggctaatt-tttt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       481502 58 +   4116138 tcagcctcccgagtagctgggactacaggtacccaccaccacgcctggctaatt-tttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53912221 58 +  58131712 tcagcctcccgagtagctgggactacaggtgcccgccaccacgcctggctaatt-tttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533738 58 -   3636681 tcagcctcccgagtagctgggactacaggtgcccgccaccacgcctggctaatt-tttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       512036 58 -   4457520 tcagcctcccgagtagctgggattacaggtgcccgccaccacgcctggctaatt-tttt
i colAng1.NW_012115278v1    C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e proCoq1.NW_012148396v1     13532645 31 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e canFam3.chr3               60060368  9 -  91889043 I
e aotNan1.NW_018503298v1       461718  0 +   3831555 C
e otoGar3.GL873689             485018  2 +   3845361 I
e cebCap1.NW_016107707v1       400661  0 -   2086007 C
e panTro5.chr15               9597515 12605 +  83230942 I
e saiBol1.JH378292             374998  0 -   2682657 C
e calJac3.chr6              154542289  0 - 158406734 C

a score=981098.000000
s hg38.chr15_KI270851v1_alt    213062 127 +    263054 gtgttttt-aataaagatgagg-tttcactgtgttagccaggatggtctcgatctcct-gacctcgtgatccacccgccttggcctcccaaagtgcagggattacacgcgtgagccaccgcacccaaccT
s panPan2.chr15              74133458 129 -  99763055 gtattttttagtagagatgggggtttcaccgtgttagccaggatggtcttgatatcct-gaccttgtgatccacccgccttggcctcccaaagtgcagggattacacgtgtgagccaccgcacccaaccT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       177841 127 -    281578 gtattttt-agtagagatgggg-tttcactgtgttagccaggatggtctcgatctcct-gacctcatgatctgcccaccttggcctcccaaagtgcagggattacacgcgtgagccaccgcacccaaccT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71040477 127 + 121039945 gtattttt-agtagagacgggg-tttcaccatgttagccaggatggtctcaatctcct-gatctcatgatccacccacctcagcctctcaaagtgcagggattacaggtgtgagccaccgcgcccaaccT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164348775 128 - 169600520 gtattttt-agtagagacgggg-tttcaccgtgttagccaggatggtctcaatctcctggacctcgtgatccgcctgcctcggcctcccaaagtactgggattacaggtgtgagccaccgcgcccggccT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165670067 128 - 171882078 gtattttt-agtagagacgggg-tttcaccgtgttagccaggatggtctcaatctcctggacctcgtgatccgcctgcctcggcctcccaaagtactgggattacaggtgtgagccaccgcgcccggccT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       523164 128 +   2379783 gtattttt-agtagagacgggg-tttcaccgtgttagccaggatggtctcaatctcctggacctcgtgatccgcctgcctcggcctcccaaagtactgggattacaggtgtgagccaccgcgcccggccT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       481560 128 +   4116138 gtattttt-agtagagacgggg-tttcactgtgttagccagcatggtctcaatctcctggacctcgtgatccgcctgccttggcctcccaaagtactgggattacaggtgtgagccaccatgcccggccT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53912279 128 +  58131712 gtattttt-agtagagacgagg-tttcaccgtgttagccaggatggtctcaatctcctggacctcgtgatccgcctgcctcggcctcccaaagtactgggattacaggtgtgagccaccgcgcccggccT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533796 128 -   3636681 gtattttt-agtagagatgggg-tttcaccgtgttagccaggatggtctcaatctcctggacctcgtgatccgcctgccttggcctcccaaagtactgggattacaggtgtgagccaccgcgcccggccT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       512094 127 -   4457520 gtatgttt-agtagaggcgggg-tttcaccgaggtagccaggatggtctggatctcct-gaccttgtgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgagccactgcgcccagccT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542289 123 - 158406734 gtattttt-agtatagatgagg-tttcaccatcttggccaggatagtctcgatctcct-gacctcgtgatccacccgcctcagccttccaaagtgctgggatt----ttgggagccactgcacctggtcT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             374998 123 -   2682657 gtattttt-agtagagacaagg-tttcaccatcttggccaggatggtctcgatcccct-gacctcgtgatctaccctcctcagcctcccaaagtgctgggatt----ttgggagtcactgcgcctggtcT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400661 123 -   2086007 gtattttt-agcagagacgagg-tttcaccatcctggccaggatggccccaatctcct-gacctcgtgatccacccgcctcggcctcccaaagtgctgggatt----ttgggagccactgcgcctggtcT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       461718 123 +   3831555 gtattttt-agtagagatgagg-tttcaccatcttggccaggattgtcttgatctcct-gacctcgtgatccacccgcctcagcctcccaaagtgctgggatt----ttgggagccactgcgcctggccT
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56156782   7 + 145441459 I
e proCoq1.NW_012148396v1     13532645  31 +  16154928 I
e dasNov3.JH562051             443985 160 +    563711 I
e canFam3.chr3               60060368   9 -  91889043 I
e otoGar3.GL873689             485018   2 +   3845361 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=32976.000000
s hg38.chr15_KI270851v1_alt    213189 3 +    263054 AGA
s panPan2.chr15              74133587 3 -  99763055 AGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       177968 3 -    281578 AGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71040604 3 + 121039945 AGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164348903 3 - 169600520 AGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165670195 3 - 171882078 AGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       523292 3 +   2379783 AGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       481688 3 +   4116138 AGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53912407 3 +  58131712 AGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533924 3 -   3636681 AGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       512221 3 -   4457520 AGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542412 3 - 158406734 AGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             375121 3 -   2682657 AGA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400784 3 -   2086007 AGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       461841 3 +   3831555 AGC
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60060377 3 -  91889043 AAA
i canFam3.chr3              I 9 C 0
s dasNov3.JH562051             444145 3 +    563711 AGA
i dasNov3.JH562051          I 160 C 0
e mm10.chr7                  56156782 7 + 145441459 I
e proCoq1.NW_012148396v1     13532645 31 +  16154928 I
e otoGar3.GL873689             485018 2 +   3845361 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=72994.000000
s hg38.chr15_KI270851v1_alt    213192 7 +    263054 GTCTAGT
s panPan2.chr15              74133590 7 -  99763055 GTCTAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       177971 7 -    281578 ATCTAGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71040607 7 + 121039945 GTCTAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164348906 7 - 169600520 GTCTAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165670198 7 - 171882078 GTCTAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       523295 7 +   2379783 GTCTGAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       481691 7 +   4116138 GTCTAAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53912410 7 +  58131712 GTCTAAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533927 7 -   3636681 GTCTAAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       512224 7 -   4457520 GTCTAAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542415 7 - 158406734 GTTTAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             375124 7 -   2682657 GTCTAGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400787 7 -   2086007 GTCTAGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       461844 7 +   3831555 GTCCAGT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             485020 7 +   3845361 GTCTAAT
i otoGar3.GL873689          I 2 C 0
s canFam3.chr3               60060380 7 -  91889043 GAGTAGT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             444148 7 +    563711 GCCTAGT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56156782 7 + 145441459 I
e proCoq1.NW_012148396v1     13532645 31 +  16154928 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=954481.000000
s hg38.chr15_KI270851v1_alt    213199 81 +    263054 TTTTGTTCGATGTCTGAACCTTGAAGATTTTGGTTTTCTATCACATAATGAGGCAGAAGTCATACCTGATTTAACATGCTT
s panPan2.chr15              74133597 80 -  99763055 TTTTGT-CGATGTCTGAACCTTGAAGATTTTGGTTTTCTATCACATAATGAGGCAGAAGTCATACCTGATTTAACATGGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       177978 81 -    281578 TTTTGTTCGATGTCTGAACCTTGAAGATTTTGGTTTTCTATCACATAATGAGGCAGAAGTCATACCTGATTTAACATGCTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71040614 81 + 121039945 TTTTGTTCGATGTCTGAACCTTGAAGATTTTGGTTTTCTATCACATAATGAGGCAGAAGTCATACCTGATTTAACATGCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164348913 81 - 169600520 TTTTGTTTGATGTCTGAACCTTGAAGATTTTGGTTTTCTATCACATAATGAGGCAGAAGTCATACCTGATTTAACATGCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165670205 81 - 171882078 TTTTGTTTGATGTCTGAACCTTGAAGATTTTGGTTTTCTATCACATAATGAGGCAGAAGTCATACCTGATTTAACATGCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       523302 81 +   2379783 TTTTGTTTGATGTCTGAACCTTGAAGATTTTGGTTTTCTATCACATAATGAGGCAGAAGTCATACCTGATTTAACATGCTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       481698 81 +   4116138 TTTTGTTTGATGTCTGAACCTTGAAGATTTTGGTTTTCTATCACATAATGAGGCAGAAGTCATACCTGATTTAACATGCTC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53912417 81 +  58131712 TTTTGTTTGATGTCTGAACCTTGACGATTTTGGTTTTCTATCACATAATGAGGCAGAAGTCATACCTGATTTAACATGCTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       533934 81 -   3636681 TTTTGTTTGATGTCTGAACCTTGAAGATTTTGGTTTTCTATCACATAATGAGGCAGAAGTCATACCTGATTTAACATGCTC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       512231 81 -   4457520 TTTTGTTTGATGTCTGAACCTTGAAGATTTTGGTTTTCTATCACATAATGAGGCAGAAGTCATACCTGATGTAACATGCTC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542422 81 - 158406734 TTTTGTTTGATGTCTAAACCTTGAAGATTTTGATTTTCTGTTATTGAATGGGGCAAAAGTCATACCTGATTCAACATGCTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             375131 81 -   2682657 TTTTGTTTGATGTCTGAACCTTGAAGATTTTGGTTTTCTGTTACTGAATGGGGCAAAAGCCATACCTGCTTCAGCATGCTC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400794 81 -   2086007 TTTTGTTTGATGTCTGAACCTTGAAGATTTTGATTTTCTGTTACTGAATGGGGCAGAAGTCATACCTGATTCAGCATGCTC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       461851 81 +   3831555 TTTTGTTTGATGTCTGAACCTCGAAGATTTTGATTTTCTGTTACTGAATGGGGGAGAAGTCATAACTGATTTAACATGCTC
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13532676 81 +  16154928 TTTTGTTTGATACCTGAGCCTTGAAGATTTGGGTTGTCTGTTGCTTAATGAGGAAGAAATCATATCTGGCTTAACATGCTC
i proCoq1.NW_012148396v1    I 31 C 0
s otoGar3.GL873689             485027 79 +   3845361 -TTCGTTTGATATCTGAGTCTTGAAGATTCTGGTGGTCTGTC-TTTAATGAGGCAGAGATCCTGTCTAGCTTAACATGCCC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60060387 77 -  91889043 ----TTTTGATATCTGAGCCTTGAAGATTTTGATGGCCCAGTGCTTTAAGAGGTAGAGCTCATACTCGATTTGACACGTTC
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             444155 76 +    563711 TTTTATTTGCTGTCTGAGTCTTGTAGATTTCAGTTG--TAGCCCTTGATGGAGTAGAAGTCATGTACTGTTT---ATGTTC
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56156782  7 + 145441459 I
e panTro5.chr15               9597515 12605 +  83230942 I

a score=1251433.000000
s hg38.chr15_KI270851v1_alt    213280 98 +    263054 AA-TGCATTTTCTTTAATAGTAAAGTGGTGTTCGCAGTTGAAAA-TAGAATCTTACACATATTTTGTTTTTAAATTCAGATGATGGAGCAGTGGTATCAC
s panPan2.chr15              74133677 98 -  99763055 AG-TGCATTTTCTTTAATAGTAAACTGGTGTTCGCAGTTGAAAA-TAGAATCTTACACATATTTTGTTTTTAAATTCAGATGATGGAGCAGTGGTATCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       178059 98 -    281578 AA-TGCATTTTCTTTAATAGTAAACTGGTGTTCGCAGTTGAAAA-TAGAATCTTACACATATTTTGTTTTTAAATTCAGATGATGGAGCAGTGGTATCAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71040695 98 + 121039945 AG-TGCATTTTCTTTAATAGTAAAGTGGTGTTCGCAGTTGAAAA-TAGAATCTTACACACATTTTGTTTTTAAATTCAGATGATGGAGCAGTGGTATCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164348994 98 - 169600520 AA-TGCATTTCCTTTAACAGTAAAGTGGTGTTCGCAGTTGAAAA-TAGAATCTTACACATGTTTTGTTTTTAAATTCAGATGATGGAGCAGTGGCATCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165670286 98 - 171882078 AA-TGCATTTCCTTTAACAGTAAAGTGGTGTTCGCAGTTGAAAA-TAGAATCTTACACATGTTTTGTTTTTAAATTCAGATGATGGAGCAGTGGCATCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       523383 98 +   2379783 AA-TGCATTTCCTTTAACAGTAAAGTGGTGTTCGCAGTTGAAAA-TAGAATCTTACACATGTTTTGTTTTTAAATTCAGATGATGGAGCAGTGGCATCAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       481779 98 +   4116138 AA-TGCATTTCCTTTAACAGTAAAGTGGTGTTCGCAGTTGAAAA-TAGAATCTTACACATGTTTTGTTTTTAAATTCAGATGATGGAGCAGTGGCATCAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53912498 98 +  58131712 AA-TGCATTTTCTTTAACAGTAAAGTGGTGTTCACAGTTGAAAA-TAGAATCTTACACATGTTTTGTTTTTAAATTCAGATGATGGAGCAGTGGCATCAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       534015 98 -   3636681 AA-TGCATTTCCTTTAACAGTAAAGTGGTGTTCGCAGTTGAAAA-TAGAATCTTACACATGTTTTGTTTTTAAATTCAGATGATGGAGCAGTGGCATCAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       512312 98 -   4457520 AG-TGCATCTTCTTTAATAGTAAAGTGGTGTTCGCAGTTGAAAA-TCGAATCTTACACATATTTTGCTTTTAAATTCAGATGATGGAGCAGTGGCATCAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542503 98 - 158406734 AG-TGTATTCTCTTTAATAGTAAAGAGGCGTTTGCAGTTGAAAA-TAGAATCTCATACATACTTTGTTTTTGAATTCAGATGACGGAGCAGCAGCCTCAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             375212 98 -   2682657 AG-TGTATTCTCTTTAATAGTAAAGAGGCCTTTGCAGTTGAAAA-TAGAATCTTATACATACTTTGTTTTTGAATTCAGATGACGGAGCAGCGGCATCAC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400875 98 -   2086007 AG-TGTATTCTCTTTAATAGTAAAGAGGCGTTTGCAGTTGAAAA-TAGAATCTTATACATACTTTGTTTTTGAATTCAGATGACGGAGCAGCAGCTTCAC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       461932 98 +   3831555 AG-TGTATTCTCTTTAATAGTAAAGAGGCGTTTGCAGCTGAAAA-TAGAATCTTATACATACTTTGTTTTTGAATTCAGATGACGGAGCAGTGGCATCAC
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13532757 97 +  16154928 AATTACATTCTCTTTAATGATAGA--AATGTTTGCAGTTGAAAA-TAGAATGTTATGCATATTTTGTTTTTACATTCAGATGACGGAGCAGCTGCATCCC
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             485106 96 +   3845361 AA-CACGTCCTCGTTGATAATAGA--GATGTTTGCAGTTGAAAA-TGGAATGTCGTGCATATTTTGTTTTTACGTTTAGATGATGGAGCAGTCGCATCCC
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56156789 91 + 145441459 AG-TGCATTATCT---AGAGTAGA--GATGTTGGTTGTTGAAAAGTAGAGTGTT---TAAATTGTGCTTTTAAATTCAGATGATGGAGCAGCTGCATCCC
i mm10.chr7                 I 7 C 0
s canFam3.chr3               60060464 97 -  91889043 AG-TGCATTATCTTTAATGGTAAAGAGATGTTAGGAGTTGAAAT-TATAATGT-ATGCATATTTTGTTTTTAAATTCAGATGATGGAGCAGCTGCATCCC
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             444231 98 +    563711 AG-TGCATTATTTTTAATAGTAAAAAGATGTTTGAGATTGATAA-TACAGTGTTATATGTATTTTGTTTTAAAATGTAGACGATGGTGCTGTCGCATCCC
i dasNov3.JH562051          C 0 C 0
e panTro5.chr15               9597515 12605 +  83230942 I

a score=2617981.000000
s hg38.chr15_KI270851v1_alt    213378 152 +    263054 CTGACCTTGGGGACATGTCTCCTGAAGGGCCGCAGCCCCCCATGATCCTCTTGCAGCAGCTGCTGGCCTCGGC--CACCCAGCCGTCTCCTGTGAAGGCCATATTTGATAAACAGGAACTTGAGGTACAGCCATGCAGCCTTGAC-AGTTTTTAA
s panTro5.chr15               9610120 152 +  83230942 CTGACCTTGGGGACATGTCTCCTGAAGGGCCGCAGCCCCCCATGATCCTCTTGCAGCAGCTGCTGGCCTCGGC--CACCCAGCCGTCTCCTGTGAAGGCCATATTTGATAAACAGGAACTTGAGGTACAGCCATGCAGCCTTGAC-AGTTTTTAA
i panTro5.chr15             I 12605 C 0
s panPan2.chr15              74133775 152 -  99763055 CTGACCTTGGGGACATGTCTCCTGAAGGGCCGCAGCCCCCCATGATCCTCTTGCAGCAGCTGCTGGCCTCGGC--CACCCAGCCGTCTCCTGTGAAGGCCATATTTGATAAACAGGAACTTGAGGTACAGCCATGCAGCCTTGAC-AGTTTTTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       178157 152 -    281578 CTGACCTTGGGGACATATCTCCTGAAGGGCCACAGCCCCCCATGATCCTCTTGCAGCAGCTGCTGGCCTCGGC--CACCCAGCCGTCTCCTGTGAAGGCCATATTTGATAAACAGGAACTTGAGGTACAGCCATGCAGCCTTGAC-AGTTTTTAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71040793 154 + 121039945 CTGACCTTGGGGACATGTCTCCTGAAGGGCCGCAGCCCCCCATGATCCTCTTGCAGCAGCTGCTGGCCTCAGCCACACCCAGCCGTCTCCTGTGAAGGCCATATTTGATAAACAGGAACTTGAGGTACAGCCATGCAGCCTTGAC-AATTTTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164349092 152 - 169600520 CTGACCTTGGGGACATGTCTCCTGAAGGGCCACAGCCCCCCATGATCCTCTTGCAGCAGCTGCTGGCCTCGGC--CACCCAGCCGTCTCCTGTGAAGGCCATATTTGATAAACAGGAACTTGAGGTACAGCCAGGCAGCCTTGAC-AGTTTTTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165670384 152 - 171882078 CTGACCTTGGGGACATGTCTCCTGAAGGGCCACAGCCCCCCATGATCCTCTTGCAGCAGCTGCTGGCCTCGGC--CACCCAGCCGTCTCCTGTGAAGGCCATATTTGATAAACAGGAACTTGAGGTACAGCCAGGCAGCCTTGAC-AGTTTTTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       523481 152 +   2379783 CTGACCTTGGGGACATGTCTCCTGAAGGGCCACAGCCCCCCATGATCCTCTTGCAGCAGCTGCTGGCCTCGGC--CACCCAGCCGTCTCCTGTGAAGGCCATATTTGATAAACAGGAACTTGAGGTACAGCCAGGCAGCCTTGAC-AGTTTTTAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       481877 152 +   4116138 CTGACCTTGGGGACATGTCTCCTGAAGGGCCACAGCCCCCCATGATCCTCTTGCAGCAGCTGCTGGCCTCGGC--CACCCAGCCGTCTCCTGTGAAGGCCATATTTGATAAACAGGAACTTGAGGTACAGCCAGGCAGCCTTGAC-AGTTTTTAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53912596 152 +  58131712 CTGACCTTGGGGACATGTCTCCTGAAGGGCCACAGCCCCCCATGATCCTCTTGCAGCAGCTGCTGGCCTCGGC--CACCCAGCCGTCTCCTGTGAAGGCCATATTTGATAAACAGGAACTTGAGGTACAGCCAGGCAGCCTTGAC-AGTTTTTAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       534113 152 -   3636681 CTGACCTTGGGGACATGTCTCCTGAAGGGCCACAGCCCCCCATGATCCTCTTGCAGCAGCTGCTGGCCTCGGC--CACCCAGCCGTCTCCTGTGAAGGCCATATTTGATAAACAGGAACTTGAGGTACAGCCAGGCAGCCTTGAC-AGTTTTTAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       512410 152 -   4457520 CTGACCTTGGGGACATGTCTCCTGAAGGGCCACAGCCCCCCATGATCCTCTTGCAGCAGCTGCTGGCCTCGGC--CACCCAGCCGTCTCCTGTGAAGGCCATATTTGATAAACAGGAACTTGAGGTACAGCCAGACAGCCTTGAC-AGTTTTTAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542601 152 - 158406734 CTGACCTTGGCGATGTGTCACCTGAAGGGCCGCAGCCCCCCATGATCCTCTTGCAGCAGCTGCTGGCCTCGGC--CACCCAGCCGTCTCCCGTGAAGGCCATATTTGATAAACAGGAACTTGAGGTACAGCTGTGCAGCCTTGAC-CATTTTTAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             375310 152 -   2682657 CTGACCTTGGGGACGTGTCTCCTGAAGGGCCGCAGCCCCCCATGATCCTCTTGCAGCAGCTGCTGGCCTCGGC--CACCCAGCCATCTCCCGTGAAGGCCATATTTGATAAACAGGAACTTGAGGTACAGCTGTGCAGCCTTGAC-CATTTTTAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       400973 152 -   2086007 CTGACCTTGGGGACGTGTCTCCTGAAGGGCCGCAGCCCCCCATGATCCTCTTGCAGCAGCTGCTGGCCTCGGC--CACCCAGCCGTCTCCCGTGAAGGCCATATTTGATAAACAGGAACTTGAGGTACAGCTGTGCAGCCTTGAC-CATTTTTAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       462030 152 +   3831555 CTGACCTTGGGGATGTGTCTCCTGAAGGGCCGCAGCCCCCCATGATCCTCTTGCAGCAGCTGCTGGCCTCGGC--CACCCAGCCGTCTCCCGTGAAGGCCATATTTGATAAACAGGAACTTGAGGTACAGCTGTGCAGCCTTGAC-CATTTTTAA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13532854 152 +  16154928 CCGACCTTGGGGACCTGTCCCCCGAAGGGCCGCAGCCCCCCATGATCCTCTTGCAGCAGTTGCTGGCCGCAGC--CACCCAGCCATCCCCCGTGAAGGCCATATTTGATAAACAGGAACTGGAGGTATAGTTGTGTATGCCTGAC-AGTTTTTAC
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             485202 153 +   3845361 CAGATCCCGGGGACCTGTCCCCTGAAGGGCCTCAGCCCCCTATGATCCTCTTACAGCAGTTGCTGGCCGCGGC--CACCCAGCCGTCCCCCGTGAAGGCCATATTCGATAAACAGGAACTGGAGGTATAGTTGTTCACACTCAACAAGTTTCTAC
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56156880 151 + 145441459 CTGACCTTGGGGATATGTCACCTGAAGGGCCACAGCCTCCCATGATCCTCCTTCAGCAGTTACTGTCCTCAGC--CACTCAGCCATCTCCTGTGAAGGCAATATTTGATAAACAGGAACTTGAGGTACACTTGTCTAATCTTGAC-AGTTT-TAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60060561 149 -  91889043 CTGACCTTGGGGACATGTCTCCTGAGGGGCCACAGCCTCCAATGATCCTCTTGCAGCAGTTACTAGCCTCAGC--CACCCAGCCATCTCCAGTGAAGGCTATATTTGACAAACAAGAGTTAGAGGTACAGTAA--CAGCCTCTGC-AATTT-TAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             444329 152 +    563711 CTGACCTTGGAGATATGTCTCCTGAAGGGCCTCAGCCCCCAATGATCCTCCTGCAGCAGCTGCTCGCCTCAGC--CACCCAGCCATCACCAGTAAAGGCCATGTTTGATAAACAAGAACTTGAGGTACAGCTGTGCAGCCTTGAC-AGTTTATCA
i dasNov3.JH562051          C 0 I 463

a score=270529.000000
s hg38.chr15_KI270851v1_alt    213530 20 +    263054 TCCACAGCACTAAATTGTGA
s panTro5.chr15               9610272 20 +  83230942 TCCACAGCACTAAATTGTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74133927 20 -  99763055 TCCACAGCACTAAATTGTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       178309 20 -    281578 TCCACAGCACTAAATTGTGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71040947 20 + 121039945 TCCACAGCACTAAATTGTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164349244 20 - 169600520 TCCACAGTACTAAATTGTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165670536 20 - 171882078 TCCACAGTACTAAATTGTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       523633 20 +   2379783 TCCACAGTACTAAATTGTGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       482029 20 +   4116138 TCCACAGTACTAAATTGTGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53912748 20 +  58131712 TCCACAGTACTAAATTGTGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       534265 20 -   3636681 TCCACAGTACTAAATTGTGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       512562 20 -   4457520 TCCACAGTACTAAATTGTGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542753 20 - 158406734 TCCAGAGTACTAAATTGTGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             375462 20 -   2682657 TCCAGAGTACTAAATTGTGA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       401125 20 -   2086007 TCCAGAGTACTAAATTGTGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       462182 20 +   3831555 TCCAGAGTACTAAATTGTGA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13533006 20 +  16154928 TTCAGTGTACTCAATTGTAA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             485355 20 +   3845361 TTCAGAGTACTCAGTTGTAA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56157031 20 + 145441459 TTCAGTGTACTTAGTTGTGA
i mm10.chr7                 C 0 I 1
s canFam3.chr3               60060710 20 -  91889043 TCTGGTACATTAAATTCGGA
i canFam3.chr3              C 0 C 0
e dasNov3.JH562051             444481 463 +    563711 I

a score=1190897.000000
s hg38.chr15_KI270851v1_alt    213550 104 +    263054 ACAC-TTTTTTTC-TAGATGTATATTTTCTTAAGGATCTATTCTGAATGTTAAATGATAGTACGCAAATAATTCTAATGATTCATTGGGGTTTAACCATGTTTGTG------------------------------
s panTro5.chr15               9610292 104 +  83230942 ACAC-TTTTTTTC-TAGATGTATATTTTCGTAAGGATCTATTCTGAATGTTAAATGATAGTACGCAAATAATTCTAATGATTCTTTGGGGTTTAACCATGTTTGTG------------------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74133947 104 -  99763055 ACAC-TTTTTTTC-TAGATGTATATTTTCTTAAGGATCTATTCTGAATGTTAAATGATAGTACGCAAATAATTCTAATGATTCATTGGGGTTTAACCATGTTTGTG------------------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       178329 104 -    281578 ACAC-TTTTTTTC-TAGATGTATATTTTTTTAAGGATCTATTCTGAATGTTAAATGATAGTACGCAAATAATTCTAATGATTCATTGGGGTTTAACCATGTGTGTG------------------------------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71040967 104 + 121039945 ACAA-TTTTTTTC-TAGATGTATATTTTCTTAAGGATCTATTCTGAATTTCAAGTGATAGTATGCAAATAATTCTAATGATTCATTGGGGTTTAACCCTGTTTGTG------------------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164349264 104 - 169600520 ACAA-TTTTTTTC-TAGATGTATACTTTCTTAAGGATCTATTCTGAATTTTAAATGATAGTATGCAAATAATTCTAATGATGCATTAGGTTTTAACCATGTTTGTG------------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165670556 104 - 171882078 ACAA-TTTTTTTC-TAGATGTATACTTTCTTAAGGATCTATTCTGAATTTTAAATGATAGTATGCAAATAATTCTAATGATGCATTAGGTTTTAACCATGTTTGTG------------------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       523653 104 +   2379783 ACAA-TTTTTTTC-TAGATGTATACTTTCTTAAGGATCTATTCTGAATTTTAAATGATAGTATGCAAATAATTCTAATGATGCATTAGGTTTTAACCATGTTTGTG------------------------------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       482049 104 +   4116138 ACAA-TTTTTTTC-TAGATGTATACTTTCTTAAGGATCTATTCTGAATTTTAAATGATAGTATGCAAATAATTCTAATGATGCATTAGGTTTTAACCATGTTTGTG------------------------------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53912768 104 +  58131712 ACAA-TTTTTTTC-TAGATGTATACTTTCTTAAGGATCTATTCTGAATTTTAAATGATAGTATGCAAATAATTCTAATGATGCATTAGGTTTTAACCATGTTTGTG------------------------------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       534285 104 -   3636681 ACAA-TTTTTTTC-TAAATGTATACTTTCTTAAGGATCTATTCTGAATTTTAAATGATAGTATGCAAATAATTCTAATAATGCATTAGGTTTTAACCATGTTTGTG------------------------------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       512582 104 -   4457520 ACAA-TTTTTTTC-TAGATGTATACTTTCTTAAGGATCTATTCTGAATTTTAAATGATAGTATGCAAATAATTCTAATGATGCATTAGGTTTTAACCATGTTTGTG------------------------------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542773 104 - 158406734 ACCA-TTTTTTTC-TAGGCGTATATTTTCTTAATAATCTGTTCTGAATTTTAAATGATAGTATCCAAATAATTCTAGTGATTCATTAGGGTTTAACCATGTTTGTG------------------------------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             375482 104 -   2682657 AACA-TTTTTTTC-TAGGCGTGTGTTTTCTTAATGATCTGTTCTGAATTTTAAATGACAGTATCCAAATAATTCTAGTGATTCATTAGGGTTCAACCATGTTTGTG------------------------------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       401145 104 -   2086007 ACCA-TTTTTTTC-TAGGCGTATATTTTCTTAATGATCTGTTCTGAATTTTAAATGACAGTATCCAAATAATTCTAGTGATTCATTAGGGTTTAACCATGTTTGTG------------------------------
i cebCap1.NW_016107707v1    C 0 I 9
s aotNan1.NW_018503298v1       462202 104 +   3831555 ACCA-TTTTTTTC-TAGGCGTATATTTTCTTAATGATCTGTTCTGAATTTTAAATGATAGTATTCAGATAATTCTAGTGATTCATTAGGGTCTAACCATGTTTGTG------------------------------
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13533026 100 +  16154928 ATAATATTTTT----AGATGTGTATTTTCTTAAGGATATATTCTGAATTTTAAATGATGGTACCCAAATAATTCTTATGACTC-TTAGGCTTT-ACCATGTTTGGG------------------------------
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             485375 102 +   3845361 ATGA-ATTTTTAA-AAGATGTATACTCTATTAAGGATGTATTCTGAATTTTAAATGGTCATTCCCCAATAAATTCTATGACTG-TTAAACTTT-GCTGTATTTGGG------------------------------
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60060730 134 -  91889043 ACAA-CTTTTTTCACAAATGTGTGTTTTCTTAAGGATATATTTTGAAATTTAAATGATA-TGCCAAAATAATTCTTATGACTAGCTAGACTTTAATCATGTTTGTCATGGAACATTGCAGTACTGGTTAGAAGATG
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56157051   1 + 145441459 I
e dasNov3.JH562051             444481 463 +    563711 I

a score=113852.000000
s hg38.chr15_KI270851v1_alt    213654 25 +    263054 CATAGTCTGCAG---AACATTATAATAC
s panTro5.chr15               9610396 25 +  83230942 CATAGTCTGCAG---AACATTATAATAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74134051 25 -  99763055 GATAGTCTGCAG---AACATTATAATAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       178433 25 -    281578 CATAGTCTGCAG---AACATTATAATAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71041071 25 + 121039945 CATAGTCTGCAG---AACATTATAATAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164349368 25 - 169600520 CATAGTCTGCAG---AAAATTATAATAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165670660 25 - 171882078 CATAGTCTGCAG---AAAATTATAATAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       523757 25 +   2379783 CATAGTCTGCAG---AAAATTATAATAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       482153 25 +   4116138 CATAGTCTGCAG---AAAATTATAATAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53912872 25 +  58131712 CATAGTCTGCAG---AAAATTATAATAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       534389 25 -   3636681 CATAGTCTGCAG---AAAATTATAATAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       512686 25 -   4457520 CATAGTCTGCAG---AACATGATAATAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542877  9 - 158406734 -----------------CATACTAGT--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             375586  9 -   2682657 -----------------CATCCTAGT--
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       462306  9 +   3831555 -----------------CATACTAGT--
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13533126 25 +  16154928 CATAGTCAGCAG---AACGTTGTAACAC
i proCoq1.NW_012148396v1    C 0 I 4
s otoGar3.GL873689             485477 15 +   3845361 CACAGTCAGCAA---AGC----------
i otoGar3.GL873689          C 0 I 2
s canFam3.chr3               60060864 28 -  91889043 TATGAGTTGAAGTTTAACCTTATTATTT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e dasNov3.JH562051             444481 463 +    563711 I
e cebCap1.NW_016107707v1       401249  9 -   2086007 I

a score=145217.000000
s hg38.chr15_KI270851v1_alt    213679 15 +    263054 TAAAGAC--------------------------TGAGAGGG
s panTro5.chr15               9610421 15 +  83230942 TAAAGAC--------------------------TGAGAGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74134076 15 -  99763055 TAAAGAC--------------------------TGAGAGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       178458 15 -    281578 TAAAGAC--------------------------TGAGAGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71041096 15 + 121039945 TAAAGAC--------------------------GGAGAGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164349393 15 - 169600520 TAAAGAC--------------------------GGAGAGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165670685 15 - 171882078 TAAAGAC--------------------------GGAGAGGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       523782 15 +   2379783 TAAAGAC--------------------------GGAGAGGG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       482178 15 +   4116138 TAAAGAC--------------------------GGAGAGGG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53912897 15 +  58131712 TAAAGAC--------------------------GGAGAGGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       534414 15 -   3636681 TAAAGAC--------------------------GGAGAGGG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       512711 15 -   4457520 TAAAGAC--------------------------GGAGAGGG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542886 15 - 158406734 TAAAGAA--------------------------TGAGAGAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             375595 15 -   2682657 TAAAGAA--------------------------TGAGAGAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       401258 15 -   2086007 TAAAGAA--------------------------AGAGAGAG
i cebCap1.NW_016107707v1    I 9 C 0
s aotNan1.NW_018503298v1       462315 15 +   3831555 TAAAGAA--------------------------TGAGAGAG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13533155 15 +  16154928 TAAAGAG--------------------------TGAGAAGG
i proCoq1.NW_012148396v1    I 4 C 0
s otoGar3.GL873689             485494 14 +   3845361 GAAAAGG--------------------------TGA-AATG
i otoGar3.GL873689          I 2 C 0
s canFam3.chr3               60060892 40 -  91889043 -AAAAAAATATAttttttatttacttatttatttgagagag
i canFam3.chr3              C 0 I 125
e mm10.chr7                  56157051  1 + 145441459 I
e dasNov3.JH562051             444481 463 +    563711 I

a score=1376317.000000
s hg38.chr15_KI270851v1_alt    213694 110 +    263054 TTGAAGTTTAACCTTATTTTGGGTTTGTGTAAATTGTGAAAAAATATTA-----ACTAGATGCAGCATGGGTTAAACGCTCACATCTTCATGAAGGGATCTTTTTCCAGGAAGTA
s panTro5.chr15               9610436 110 +  83230942 TTGAAGTTTAACCTTATTTTGGGTTTGTGTAAATTGTGAAAAAATATTA-----ACTAGATGCAGCATGGGTTAAATGCTCACATCTTCATGAAGGGATCTTTTTCCAGGAAGTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74134091 110 -  99763055 TTGAAGTTTAACCTTATTTGTGGTTTGTGTAAATTGTGAAAAAATATTA-----ACTAGATGCAGCATGGGTTAAATGCTCACATCTTCATGAAGGGATCTTTTTCCAGGAAGTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       178473 110 -    281578 TTGAAGTTTAACCTTATTTTGGGTTTGTGTAAATTGTTAAAAAATATTA-----ACTAGATGCAGCATGGGTTAAATGCTCACATCTTCATGAAGGGATCTTTTTCCAGGAAGTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71041111 110 + 121039945 TTGAAGTTTAACCTTATTTTGGATTTGTGTAAATTGTTAAAAAATATTA-----ACTAGATGCAGCATGGGTTAAATGCTCACATCTTCACGAAGGGATCTTTTTCCAGGAAGTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164349408 110 - 169600520 TTGAAGTTTAACCTTATTTTGGATTTGTGTAAATCATTAAAAAATATTA-----ACTAGATGCAGCATGGATTAAATGCTCACATCTTCATGAAGGGATCTTTTTCCAGGAAGTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165670700 110 - 171882078 TTGAAGTTTAACCTTATTTTGGATTTGTGTAAATCATTAAAAAATGTTA-----ACTAGATGCAGCATGGGTTAAATGCTCACATCTTCATGAAGGGATCTTTTTCCAGGAAGTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       523797 110 +   2379783 TTGAAGTTTAACCTTATTTTGGATTTGTGTAAATCATTAAAAAATGTTA-----ACTAGATGCAGCATGGGTTAAATGCTCACATCTTCATGAAGGGATCTTTTTCCAGGAAGTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       482193 110 +   4116138 TTGAAGTTTAACCTTATTTTGGATTTGTGTAAATCATTAAAAAGTATTA-----ACTAGATGCAGCATGGGTTAAATGCTCACATCTTCATGAAGGGATCTTTTTCCAGGAAGTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53912912 110 +  58131712 TTGAAGTTTAACCTTATTTTGGATTTGTGTAAATCATTAAAAAATATTA-----ACTAGATGCAGCATGGGTTAAATGCTCACATCTTCATGAAGGGATCTTTTTCCAGGAAGTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       534429 110 -   3636681 TTGAAGTTTAACCTTATTTTGGATTTGTGTAAATCATTAAAAAATATTA-----ACTAGATGCAGCATGGGTTAAATGCTCACATCTTCATGAAGGGATCTTTTTCCAGGAAGTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       512726 110 -   4457520 TTGAAGTTTAACCTTATTTTGGATTTGTGTAACTCATTAAAAAATATTA-----ACTAGATGCAGCATGGGTTAAATGCTCACATCTTCATGAAGGGATCTTTTTCCAGGAAGTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154542901 110 - 158406734 TTGAAATTTAACCTTATTTTGGATTTGTGTAAATTGTTAACAAATACTA-----ACTAGATGCAGACTGGGTGAAATGCTCACAGTTTCATGAAGGGATCTTTTTCCAGGAAGTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             375610 110 -   2682657 CTGAAGTTTAACCTTATTTTGGATTTGTGTAAATTGCTAACAGATACTA-----ACTAGATGCAGCCTGGGTGAAATGCTCACAGCTTCATGAAGGGATCTTTTTCCAGGAAGTA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       401273 110 -   2086007 TTTAAGTTTAACCTTATTTTGGATTTGTGTAAATTGTTAACAAATACTA-----ACTAGACGCAGCCTGGGTGAAATGCTCACAGCTTCATGAAGGGATCTTTTTCCAGGAAGTA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       462330 110 +   3831555 TTGAAGTTTAACCTTATTTTGGATTTGTGTAAATGGTTAACAAATACTA-----ACTAGATGCAGCCTGGGTGAAATGCTCACAGCTTCATGAGAGGATCTTTTTCCAGGAAGTA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13533170 101 +  16154928 TTGAAGTTTAACCTTATTTTGGATTTGTGTAAATTGTTTG--------------AGTAGATGTAGCATGGGTTAAACGCTCATATATTTATGGAGGGGTCTTTTTCCAGAAAGTA
i proCoq1.NW_012148396v1    C 0 I 2043
s otoGar3.GL873689             485508 103 +   3845361 TTGAAG----------TTTTGCATTTGTGTAAGTTGTTTGCAAACACGACACTCACTAGA-GCAGCGTGGCTTAAACACTCAGATACTTA-GGGCGGGTCCTTTTCTAGGAAGTG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60061057 110 -  91889043 cTGAAGTTTAACCTTATTTTGAACATATGTGAATTATATGAAACAGTTA-----ATGAGATTCAGCATGGTTCAGATGCTCAAATATTTATGGTGTGATCTTTTTTCAGGAAATA
i canFam3.chr3              I 125 C 0
e mm10.chr7                  56157051   1 + 145441459 I
e dasNov3.JH562051             444481 463 +    563711 I

a score=317428.000000
s hg38.chr15_KI270851v1_alt    213804 33 +    263054 GAATTATTCAAAGAGGCTC-------GTCAG-----GACTCTGGC
s panTro5.chr15               9610546 33 +  83230942 GAATTATTCAAAGAGGCTC-------GTCAG-----GACTCTGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74134201 33 -  99763055 GAATTATTCAAAGAGGCTT-------GTCAG-----GACTCTGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       178583 33 -    281578 GAATTATTCAAAGAGGCTC-------GTCAG-----GACTCTGGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71041221 33 + 121039945 GAATTATTCAAAGAGGCTC-------GTCAG-----GACTCTGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164349518 33 - 169600520 GAGTTATTCAAAGAGGCTC-------ATCAG-----GACTCTGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165670810 33 - 171882078 GAGTTATTCAAAGAGGCTC-------ATCAG-----GACTCTGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       523907 33 +   2379783 GAGTTATTCAAAGAGGCTC-------ATCAG-----GACTCTGGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       482303 33 +   4116138 GAGTTACTCAAAGAGGCTC-------ATCAG-----GACTCTGGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53913022 33 +  58131712 GAGTTATTCAAAGAGGCTC-------ATCAG-----GACTCTGGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       534539 33 -   3636681 GAGTTATTCAAAGAGGCTC-------ATCAG-----GACTCTGGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       512836 33 -   4457520 GAGTTATTCAAAGAGGCTC-------ATCAG-----GACTCTGGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154543011 33 - 158406734 GAATTACTGAAAGTGGCTC-------ATCAG-----GACTGTGGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             375720 33 -   2682657 GAATTACTGAGAGCAGCTC-------ATCAG-----GACTATGGC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       401383 33 -   2086007 GAATTACTGAGAGCGGCTC-------ATCAG-----GACTGTGGC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       462440 33 +   3831555 GAATGACTGAAAGCAGCTC-------CTCAG-----GACTGTGGC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             485611 37 +   3845361 TAGCTACTGGAAGAGACT--------GTTAGACTGAGACCACGGC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60061167 33 -  91889043 -------TTGAAGAAGCTCCATTAGACCTAG-----GAATATTGC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e dasNov3.JH562051             444481 463 +    563711 I

a score=2055306.000000
s hg38.chr15_KI270851v1_alt    213837 206 +    263054 AGCCATTTGTCTGTTT---CATTCACT-CAGGAGCCTCTT-GGGGG--TGCTCTGGTGCCGCCAGCCTCTC--------------CGCTCTCTCCATGCTGTGGAGCAGGTGAGGGCAGCAGCGAGGCACAGGGTCAGGGCTAC--GGG-ACGTTCGCATAGAGGAGGC----GACGTGATTGAGTGTAAGAGGGATGGGAGC-TTTCATGGCTGGC--AACATAGAGGATTAGAGA
s panTro5.chr15               9610579 207 +  83230942 AGCCGTTTGTCTGTTT---CATTCACT-CAGGAGCCTCTTCGGGGG--TGCTCTGGTGCTGCCAGCCTCTC--------------AGCTCTCTCCATGCTGTGGAGCAGGTGAGGGCAGCAGCGAGGCACACGGTCAGGGCTAC--AGG-ACGTTCGCATAGAGGAGGC----GACGTGATTGAGTGTAAGAGGGATGGGAGC-TTTCATGGCTGGC--AACATAGAGGATTAGAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74134234 207 -  99763055 AGCCGTTTGTCTGTTT---CATTCACT-CAGGAGCCTCTTCGAGGG--TGCTCTGGTGCCGCCAGCCTCTC--------------AGCTCTCTCCATGCTGTGGAGCAGGTGAGGGCAGCAGCGAGGCACACGGTCAGGGCTAC--AGG-ACGTTCGCATAGAGGAGGC----GACGTGATTGAGTGTAAGAGGGATGGGAGC-TTTCATGGCTGGC--AACATAGAGGATTAGAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       178616 207 -    281578 AGCCGTTTGTCTGTTT---CATTCACT-CAGGAGCCTCTTCAGGGG--TGCTCTGGTGCCGCTAGCCTCTC--------------CGCTCTCTCCATGCTGTGGAGCAGGTGAGGGCAGCAGCAAGGCACACGGTCAGGCCTAC--AGG-ACGTTCGCATAGAGGAAGC----GACGTGATTGAGTGTAAGAGGGATGGGAGC-TTTCATGGCTGGC--AACATAGAGGATTAGAGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71041254 207 + 121039945 ACCCGTTTGTCTGTTT---CATTCACT-CAGGAGCCTCTTCGGGGG--TGCTCTGGTGCCACCATCCTCTC--------------AGCTCTCTCCATGCTGTGGAGCAGGTGAGGGCAGCAGCGAGGCACACGGTCAGGGCTAC--AGG-ACGTTCCCATAGAGGAGGC----GACGTGATTGAGTGTAAGAGGGATGGGAGC-TTTCATGGCTGGC--AACATAGAGGATTAGAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164349551 207 - 169600520 ACCCACTTGTTTGTTT---CATTCACT-CAGGAGCCTCTTTGGGTG--TGCTCTGGTGCCGCCAGCCTCTC--------------AGCTCTCCCCATGCTGTGGAGCAGGTGAGGGCAGTGGCGAGGCGCACGGTCAGGGCTAT--AGG-CTGTTCCCGCAGAAGAGGC----CACGTGATTGAGCGTAAGAGGGATGGGAGC-TTTCATGGCTGGC--AACATAGAGGATTAGAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165670843 207 - 171882078 ACCCACTTGTTTGTTT---CATTCACT-CAGGAGCCTCTTTGGGTG--TGCTCTGGTGCCGCCAGCCTCTC--------------AGCTCTCCCCATGCTGTGGAGCAGGTGAGGGCAGTGGCGAGGCGCACTGTCAGGGCTAT--AGG-CTGTTCCCGCAGAAGAGGC----CACGTGATTGAGTGTAAGAGGGATGGGAGC-TTTCATGGCTGGC--AACATAGAGGATTAGAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       523940 207 +   2379783 ACCCACTTGTTTGTTT---CATTCACT-CAGGAGCCTCTTTGGGTG--TGCTCTGGTGCCGCCAGCCTCTC--------------AGCTCTCCCCATGCTGTGGAGCAGGTGAGGGCAGCGGTGAGGCGCACTGTCAGGGCTAT--AGG-CTGTTCCCGCAGAAGAGGC----CACGTGATTGAGTGTAAGAGGAATGGGAGC-TTTCATGGCTGGC--AACATAGAGGACTAGAGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       482336 207 +   4116138 ACCCGCTTGTTTGTTT---CATTCAGT-CAGGAGCCTCTTTGGGTG--TGCTCTGGTGCCGCCAGCCTCTC--------------AGCTCTCCCCATGCTGTGGAGCAGGTGAGGGCAGTGGCGAGGCGCACGGTCAGGGCTAT--AGG-CTGTTCCCGCAGAAGAGGC----CACGTGATTGAGTGTAAGAGGGATGGGAGC-TTTCATGGCTGGC--AACATAGAGGATTAGAGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53913055 207 +  58131712 ACCCGCTTGTTTGTTT---CATTCACT-CAGGAGCCTCTTTGGGTG--TGCTCTGGTGCCGCCAGCCTCTC--------------AGCTCTCCCCATGCTGTGGAGCAGGTGAGGGCAGTGGCGAGGCGCACGGTCAGGGCTAT--AGG-CTGTTCCCGCAGAAGAGGC----CACATGATTGAGTGTAAGAGGGATGGGAGC-TTTCATGGCTGGC--AACATAGAAGATTAGAGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       534572 207 -   3636681 ACCCACTTGTTTGTTT---CATTCACT-CAGGAGGCTCTTTGGGTG--TGCTCTGGTGCCGCCAGCCTCTC--------------AGCTCTCCCCATGCTGTGGAGCAGGTGAGGGCAGTGGTGAGGCACACGGTCAGGGCTAT--AGG-CTGTTCCCGCAGAAGAGGC----CACGTGATTGAGTGTAAGAGGGATGGGAAC-TTTCATGGCTGGC--AACATAGAGGATTAGAGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       512869 207 -   4457520 ACCCGCTTGTTTGTTT---CATTCACT-CAGGAGCCTCTTTGGGTG--TGCTCTGGTGCCGCCAGCCTCTC--------------AGCTCTCCCCATGCTGCGGAGCAGGTGAGGGCAGTGGGGAGGCGCACGGTCAGGGCTAT--AGG-CTGTTCCCACAGAAGAGGC----CACGTGATTGAGTCTAAGAGGGATGGGAGC-TTTCATGGCTGGC--AACATAGAGGATTAGAGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154543044 210 - 158406734 GGCCGCTTGTTTGTTT---CACTCACT-CGGGAGCCTGTTGAGGTG--TGCTCTGGTGCCACCAGGCTCTC--------------AGCTCTCCCCATGTTGTGGAGCAGGTGAGGGCAGCTGTGAGAAGCATGGTCAGGGCTAC--GGG-GTGTTCCTGTAGAAGAGGCAGGTGATGTGACTGGGTGTAAGAGG-ATGGGAGC-TTTCACGGCTGGC--AACATGGAGGATTAGAGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             375753 186 -   2682657 ACCCGCTTGTTTGTTT---CACTCACT-CAAGAGTCTCTTCGGGTG--TGCTCTGGTGCCACCAGGCTCTC--------------AGCTCTCCCTATGTTGTGGAGCAGGTGAGGGCAGCCGTGAGGAGCATGGTCAGGGCTAC--GG-------------------------GATGTGACTGGGTGTAAGAGG-ATGGGAGC-TTTCACGGCTGGC--AACATGGAGGGTTAGAGG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       401416 186 -   2086007 ACCCGCTTGTTTGTTT---CACTCACT-CGGGAGTCTCTTCGGGTG--CGCTCTGGTGCCACCAGGCTCTC--------------AGCTCTCCCCATGTTGTGGAGCAGGTGAGGGCAGCCGTGAGGATCATGGTCAGGGCTAC--GG-------------------------GATGTGACTGGGTGTAAGAGG-GTGGGAGC-TTTCACGGCTGGC--AACATGGAGGATTAGAGG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       462473 210 +   3831555 ACCTGCTTGTTTGCTT---CACCCTCT-CGGGAGCCTCTTTGGGTG--TGCTTTGGCGCCCCCAGGCTCTC--------------AACTCTCCCCATGTTGTGCAGCAGGTGAGGGCAGCCGTGAGGAGCATGGTCAGGGCTAC--GGG-GCGTTCCCGTAGAAGAGACAGGCGATGTGACTGGGTGTAAGAGG-ATGGGAGC-TTTCACGGCTGGC--AACATGGAGGATTAGAGA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             485648 177 +   3845361 ACTTACTTG-CTGTGT---CCTTCACT-CCTCAGCCTCCT-----G--TGCTCTGTTGCTGCCGGGCCCTC--------------TACCCTCTC-ACACAGTGGGGCACA-------------------------CTGGGCAAC--CGG-ATGTTCCCACAGAGGAGGC----AAGGTGTCAGGGTCTGAGAGGAACAGGAGA-TTGCATGGTAGGCAGAATCTAGAGGACTAGATG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60061200 208 -  91889043 ACTGGCATGCTTGTTC---CATTCACTCCAAGGGCTTTCTTGGGCA--TGCCCTATTGCGGCCAGGCTCTC--------------CGTCCTTGTCCTGTTGTGGAACACATGTTCTGTGCAGTGTAACTTGGGGTTGGGGCTGT--GGGAATGTTCCCATAGTAGTGAC----A--TTGACCAGGTCTAAGAGTGATGGGGACTTTTCATGGCCTGT--AGCATGAAGGATTAGATG
i canFam3.chr3              C 0 I 149
s dasNov3.JH562051             444944 209 +    563711 AGTCACTTGGACATTCTAACATCCTTT-TTAGAACTCTCCTGGGAAGCTGCCCTTGTTCTTGAGGACCTTCTGTCACCTCAGGGGAGCCCTCCCCA----GCAGAGGTGG-GCGAGCAGTGATGCGCAGCATAGTTCAGATTGCTGGGG-ATGCTTTCCTGGAAGATAT----GGCAT--TTG------------ATGGAGAC-TTTCAGAGATTGT--AACATGGAGGACTAGATA
i dasNov3.JH562051          I 463 C 0
e mm10.chr7                  56157051   1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I

a score=224667.000000
s hg38.chr15_KI270851v1_alt    214043 37 +    263054 TGTTCATTCC---------------------------------------------------------AAAATCTTTCTTGCTGTGTAATACATT
s panTro5.chr15               9610786 37 +  83230942 TGTTCATTCC---------------------------------------------------------AAAATCTTTCTTGCTGTGTAATACATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74134441 37 -  99763055 TGTTCATTCC---------------------------------------------------------AAAATCTTTCTTGCTGTGTAATACATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       178823 37 -    281578 TGTTCATTCC---------------------------------------------------------AAAATCTTTCTTGCTGTGTAATACATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71041461 37 + 121039945 TGTTTGTTCC---------------------------------------------------------AAAATCTTTCTTGCTGTGTAATACATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164349758 22 - 169600520 TG----TTCC--------------------------------------------------------------------TGCTGTGTAATACATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165671050 22 - 171882078 TG----TTCC--------------------------------------------------------------------TGCTGTGTAATACATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       524147 22 +   2379783 TG----CTCC--------------------------------------------------------------------TGCTGTGTAATACATT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       482543 33 +   4116138 TG----TTCC---------------------------------------------------------AAAATCTTTCTTGCTGCGTAATACATT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53913262 33 +  58131712 TG----TTCC---------------------------------------------------------AAAATCTTTCTTGCTGCGTAATACATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       534779 33 -   3636681 TG----TTCC---------------------------------------------------------AAAATCTTTCTTGCTGCGTAATACATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       513076 33 -   4457520 TG----TTCC---------------------------------------------------------AAAATCTTTCTTGCTGTGTAATACATT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154543254 32 - 158406734 TG----CTCC---------------------------------------------------------AAAATCTTTT-TGCTGCATAATACATA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             375939 32 -   2682657 TG----CTGC---------------------------------------------------------AAAATCTTTT-TGCTGTATAATACATA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       401602 32 -   2086007 TG----CTCC---------------------------------------------------------AAAATCTTTT-TGCTGTATAATACATA
i cebCap1.NW_016107707v1    C 0 I 150
s aotNan1.NW_018503298v1       462683 32 +   3831555 TG----CTCC---------------------------------------------------------AAAATCTTTC-TGCTGCATAATACATA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             485825 29 +   3845361 TT-------T---------------------------------------------------------AAGATCCTCT-TGCTGTGTAATTCAAA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60061557 90 -  91889043 tg----ctccttctcctgcacatgctctctctttctgaaataaataattaaaatctttaacaaaaTAAAAACCCTTCTTTCTATATAATACGTA
i canFam3.chr3              I 149 I 10
s dasNov3.JH562051             445153 33 +    563711 ----TTTTTA---------------------------------------------------------AAAATCCTTCTTGATATGTAATACATT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I

a score=156129.000000
s hg38.chr15_KI270851v1_alt    214080 15 +    263054 -AAAAATCTGGACAAA
s panTro5.chr15               9610823 15 +  83230942 -AAAAATCCGGATAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74134478 15 -  99763055 -AAAAATCTGGACAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       178860 15 -    281578 -AAAAATCTGGACAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71041498 15 + 121039945 -AAACATCTGGATAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164349780 15 - 169600520 -AAAAATCTGGGTAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165671072 15 - 171882078 -AAAAATCTGGGTAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       524169 15 +   2379783 -AAAAATCTGGGTAAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       482576 15 +   4116138 -AAAAATCTGGGTAAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53913295 15 +  58131712 -AAAAATGTGGATAAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       534812 15 -   3636681 -AAAAATCTGGGTAAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       513109 15 -   4457520 -AAAAATCTGGATAAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154543286 15 - 158406734 -AAAATTCTGGAGAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             375971 15 -   2682657 -AAAAATCTGGATAGA
i saiBol1.JH378292          C 0 I 732
s cebCap1.NW_016107707v1       401784 15 -   2086007 -AAAAATCTGGATAGT
i cebCap1.NW_016107707v1    I 150 C 0
s aotNan1.NW_018503298v1       462715 15 +   3831555 -AAAAATCTGGATCGT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             485854 15 +   3845361 -CAAGTTCTGGGAAGG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60061657 15 -  91889043 -AAAACTCTGGGTAAA
i canFam3.chr3              I 10 C 0
s dasNov3.JH562051             445186 16 +    563711 AAAAATTCTGGATCAA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I

a score=1679856.000000
s hg38.chr15_KI270851v1_alt    214095 146 +    263054 -----ATATCAGAGACAAAAATAAAACTATCAGTACTCAGTTTGGCAATCAGAAATTACTCTAACAGAAACCCTCAGATAGCAGGGCCCTTCTGGGAGCAAGGGTCCAGA-TGAGGCAGCC------------ACTGCCTTGG--------ACAGGT-GGGAGGCCT-CCCCCA--
s panTro5.chr15               9610838 146 +  83230942 -----ATATCAGAGACAAAAATAAAACTGTCAGTACTCAGTTTGGCAGTCAGAAATTACCCTAACAGAAACCCTCAGATAGCAGGGCCCTTCTGGGAGCAAGGGTCCAGA-TGAGGCAGCC------------ACTGCCTTGG--------ACAGGT-GGGAGGCCT-CCCCCA--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74134493 146 -  99763055 -----ATATCAGAGACAAAAATAAAACTATCAGTACTCAGTTTGGCAGTCAGAAATTACCCTAACAGAAACCCTCAGATAGCAGGGCCCTTCTGGGAGCAAGGGTCCAGA-TGAGGCAGCC------------ACTGCCTTGG--------ACAGGT-GGGAGGCCT-CCCCCA--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       178875 144 -    281578 -----ATATCAGAGACAAAAATAAAACTGTCAGTACTCAGTTTGGCAGTCAGAA--TACCCTAACAGAAACCCTCAGATAGCAGGGCCCTTCTGGGAGCAAGGGTCCAGA-TGAGGCAGCC------------ACTGCCTTGG--------ACAGGT-GGGAGGCCT-CCCCCA--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71041513 146 + 121039945 -----ATATCAGAGACAAAAATAAAACTGTCAGTACTCAGTTTGGCAGTCAGAAATTACCCTAACAGAAACCCTCAGATAGCAGGGCCCCTCTGGGAGCAAGGGTCCAGA-TGAGGCAGCC------------ACTGTCTTGG--------ACAGGT-CGGAGGCCT-CCCCCA--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164349795 146 - 169600520 -----ATATCAAAGACAAAAATAAAACTGTCAGTATTCAGTTTGGCAGTCAGAAATTACCCTAACAGAAACCCTCAGCGAGCAGGGCCCTTCTCGAAGCAAGGGTCCAGG-TGAGGCAGCC------------TCTGCCTTGG--------GCAGGT-GGGAGCCCT-CCCCCA--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165671087 146 - 171882078 -----ATATCAAAGACAAAAATAAAACTGTCAGTATTCAGTTTGGCAGTCAGAAATTACCCTAACAGAAACCCTCAGCGAGCAGGGCCCTTCTCGAAGCAAGGGTCCAGG-TGAGGCAGCC------------TCTGCCTTGG--------GCAGGT-GGGAGCCCT-CCCCCA--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       524184 146 +   2379783 -----ATATCAAAGACAAAAATAAAACTGTCAGTATTCAGTTTGGCAGTCAGAAATTACCCTAACAGAAACCCTCAGCGAGCAGGGCCCTTCTCGAAGCAAGGGTCCAGG-TGAGGCAGCC------------TCTGCCTTGG--------GCAGGT-GGGAGCCCT-CCCCCA--
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       482591 146 +   4116138 -----ATATCAAAGACAAAAATAAAACTGTCAGTATTCAGTTTGGCAGTCAGAAATTACCCTAACAGAAACCCTCAGTGAGCAGGGCCCTTCTCGAAGCAAGGGTCCAGG-TGAGGCAGCC------------TCTGCCTTGG--------GCAGGT-GGAAGCCCT-CCCCCA--
i cerAty1.NW_012001462v1    C 0 I 10
s chlSab2.chr26              53913310 146 +  58131712 -----ATATCAAAGACAAAAATAAAACTGTCAATATTCAGTTTGGTGGTCAGAAATTACCCTAACAGAAACCCTCAGCGAGCAGGGCCCTTCTCGAAGCAAGGGTCCAGG-TGAGGCAGCC------------TCTGCCTTGG--------GCAGGT-GGGAGCCCT-CCCCCA--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       534827 146 -   3636681 -----ATATCAAAGACAAAAATAAAACTGTCAGTATTCAGTTTGGCTGTCAGAAATTACCCTAACAGAAACCCTCAGTGAGCAGGGCCCTTCTCGAAGCAAGGGTCCAGG-TGAGGCAGCC------------TCTGCCTTGG--------GCAGGT-GGAAGCCCT-CCCCCA--
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       513124 146 -   4457520 -----ATATCAGAGACAAAAATAAAACTGTCAGTATTCAGTTTGGCAGTCAGAAATTACCCTAACAGAAACCCTCAGCGAGCAGGGCCCTTCTCGAAGCAAGGGTCCAGG-TGAGGCAGCC------------TGTGCCTTGG--------GCGGGT-GGGAGCCCT-CCCCCA--
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154543301 146 - 158406734 -----ATATCAAAGACAAAAATAAAACTATCAGTACTCAGTTTGGTAGTCAGAAATTACCATAACAGAAACCCTCAGAGAGCAGGGCCCTTCTGAGAGCAGCGGTCCAGA-TGAGGCAGCC------------ACTGCCTTGG--------GCAGAT-AGGAGGGCT-CCCCCA--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             376718 146 -   2682657 -----ATATCATAGACAAAAATAAAACTATCAGTACTCAGTTTGGTAGTCAGAAATGACCCTAATAGAAACCCTCAGAGAGCAGGGCCCTTCTGAGAGCAACGGTCCAGA-TGAGGCAGCC------------ACTGCCTTGG--------GCAGAT-AGGAGGGCT-CCCCCA--
i saiBol1.JH378292          I 732 C 0
s cebCap1.NW_016107707v1       401799 146 -   2086007 -----ATATCAAAGACAAAAATAAAACTATCAGTACTCAGTTTGGTAGTCAGAAATTACCCCAACAGAAACCCTCAGAGAGCAGGGCCCTTCTGAGAGCAATGGTCCAGA-TGAGGCAGCC------------ACTGCCTTGG--------GCAGAT-AGGAGGGCT-CCCCCA--
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       462730 146 +   3831555 -----ATATCAAAGACAAAAATAGAACGATCAGTACTCAGTTTGGTAGTCAGAAATTACCCTAACAGAAACCCTCAGAGAGCAGGGCCCTTCTGAGAGCAACGGTCCAGA-TGAGGCAGCC------------ACTGCCTTGG--------GCAGAT-AGGAGGGCT-CCACCA--
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             485869 148 +   3845361 -----CTATGAAAAACAAAAGCACCAGCCTCAGCTCCCAGTTTGGCAGGCAGAAATTACCCTATTAGAAGTCTTCAGACACCAAGGCCCTATGGGGAGCCAAGATCCAGAGTGAGGGAGTG------------CCTGTCTGGG--------GCTCATGGGGAGGGCT-CCCCTC--
i otoGar3.GL873689          C 0 I 1
s canFam3.chr3               60061672 146 -  91889043 -----ATCTCAGAGACAAAAACAAAACCTTGAGTGCTCAATTTGGCAGGCAGAATGTACCCTGATAGAAATCTTCAGAGACCAAGACTC--CAGGCAGTTGGGATCCTGAGTGAGGAAGCA------------TCTGCTTCAG--------GCTGAT-GGGAGGGCTGACAGCA--
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             445202 174 +    563711 ATAGTAAACTAAAAATAGAAAACAACCCTTCAGCACTTAGTTTGTTAGGAAGGAAGTGCCCTGATAGAAACTGTCATAGACCAAGACCCTGAGGAGAGCAGGGATCTGGAGAGAGCCAGCAGCTCCTGGGAGGCCTGCCTGGGGTGTGACAGCAGAT-GGGAGGGCC-AGCCTTCT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56157051   1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I

a score=1298805.000000
s hg38.chr15_KI270851v1_alt    214241 132 +    263054 ATCCTAGAACGAGCTGGAAAGATGGT-GGGGGTGCAAAGGGAGAAAGCAAGAAACGGGTGTGGGCAGGAAGGGAGGAGGTTG-----GCCG---------TGAGCTCTTCTGAACTCCAGCTTC----TTCTCAGGTCTGGGAACCTCCAA
s panTro5.chr15               9610984 133 +  83230942 ATCCTAGAACAAGCTGGAAAGATGGTGGGGGGTGCAAAGGGAGAAAGCAAGAAACGGGTGTGGGCAGGAAGGGAGGAGGTTG-----GCCA---------TGAGCTCTTCTGAACTCTAGCTTC----TTCTCAGGTCTGGGAACCTCCAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74134639 132 -  99763055 ATCCTAGAATGAGCTGGAAAGATGGT-GGGGGTGCAAAGGGAGAAAGCAAGAAACGGGTGTGGGCAGGAAGGGAGGAGGTTG-----GCCA---------TGAGCTCTTCTGAACTCCAGCTTC----TTCTCAGGTCTGGGAACCTCCAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       179019 132 -    281578 ATCCTAGAACGAGCTGGAAAGATGGT-GGGGGTGCAAAGGGAGAAAGCAAGAAACGGGTGTGGGCAGGAAGGGAGGAGGTTG-----GCCA---------TGAGCTCTTCTGAACTCCAGCTTC----TTCTCAGGTCTGGGAACCTCCAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71041659 132 + 121039945 GTCCTAGAATGAGCTGGAAAGATGGT-GGGGGTGCAAAGGGAGAAAGCAAGAAACGGGTGTGGGCAGGAAGGGAGGAGGTTG-----GCCA---------TGAGCTCTTCTGAACTCCAGCTTC----TTCTCAGGTCTGGGAACCTCTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164349941 133 - 169600520 GTCCTAGAATGAGCTGGAAAGATGGTGGGGGGTGCAAAGGGAGAAAGCAAGAGACGAGTGTGGGCAGGAAGGGAGGAGGTTG-----GCCG---------TGAGCTCTTCCGAACTCCAGCTTC----TTCTCAGGTCTGGGAACCTCTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165671233 133 - 171882078 GTCCTAGAATGAGCTGGAAAGATGGTGGGGGGTGCAAAGGGAGAAAGCAAGAGACGAGTGTGGGCAGGAAGGGAGGAGGTTG-----GCCG---------TGAGCTCTTCCGAACTCCAGCTTC----TTCTCAGGTCTGGGAACCTCTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       524330 133 +   2379783 GTCCTAGAATGAGCTGGAAAGATGGTGGGGGGTGCAAAGGGAGAAAGCAAGAGACGAGTGTGGGCAGGAAGGGAGGAGGTTG-----GCCG---------TGAGCTCTTCCGAACTCCAGCTTC----TTCTCAGGTCTGGGAACCTCTGA
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53913456 133 +  58131712 GTCCTAGAATGAGCTGGACAAATGGTGGGGGGCGCAAAGGGAGAAAGCAAGAGACGAGTGTGGGCAGGAAGGGAGGAGGTTG-----GCCG---------TGAGCTCTTCCGAACTCCAGCTTC----TTCTCAGGTCTGGGAACCTCTAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       534973 133 -   3636681 GTCCTAGAATGAGCTGGAAAGATGGTGGGGGGTGCAAAGGGAGAAAGCAAGAGACGAGTGTGGGCAGGAAGGGAGGAGGTTG-----GCCG---------TGAACTCTTCCGAACTCCAGCTGC----TTCTCAGGTCTGGGAACCTCTGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       513270 133 -   4457520 GTCCTAGAATGAGCTGGAAAGATGGTGGGGGGTGCAAAGGGAGAAAGCAAGAAACGAGTGTGGGCAGGAAGGGAGGAGGTTG-----GCCG---------TGAGCTCTTCTGAACTCCAGCTTC----TTCTCAGGTCTGGGAACCTCTGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154543447 127 - 158406734 GTCCTAGAATGAGCTGGAAAGATGGTGGGGGGTGCAAAGGAAGAGAGCAGGAAA------TGGGGTGGGACGGAGGAGGATG-----GCCG---------GAAGCTCTTCTGAACTCCAGCTTC----TTCTCAGGTCTGGGAACCTCTGA
i calJac3.chr6              C 0 I 308
s saiBol1.JH378292             376864 133 -   2682657 GCCCTAGAATGAGCTGGAAAGATGGTGGGGGATGCAAAGGGAGAGAGCAGGAAACGGGTGTGGGCGGGGAGGGAGGAGAATG-----GCCA---------GGAGCTCTTCTGAACTCCAGCTTC----TTCTCAGGTCTGGGAACCTCTGA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       401945 133 -   2086007 GTCCTAGAATGAGCTGGAAAGATGGTGGGGGGTGCAAAGGGAGAGAGCAGGAAACGGGTGTGGGCTGGGAGGGAGGAGGATG-----GCCA---------GGAGCTCTTCTGAACTCCAGCTTC----TTCTCAGGTCTGGGAACCTCTGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       462876 133 +   3831555 GTCCTAGAATGAGCTGGAAAGATGGTGGGGGGTGCAAAGGGAGAGAGCAGGAAACGGGTGTGGGCTGGGAGTGGGGAGGATG-----GCCA---------GAAGCTCTTCTGAACTCCAGCTTC----TTCTCAGGTCTGGGAACCTCTGA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             486018 130 +   3845361 GTCCTAGAGTGAGCTGTAAAGAT----GAGGGGGCACAGCAAGAAACTGGGACATG-----GGGTAGGGAGGGAGGAGG-TG-----GCCATGCCTTTTCTGAACCAGTGTGAACTTCAGCTCC----CTGCTAGGCCTGGAAA--TCTGA
i otoGar3.GL873689          I 1 C 0
s canFam3.chr3               60061818 137 -  91889043 ATCCCATAGTGAGCTAGGAAGAAGGT--GGAATGCAAAGGGAGAAGGCAAGAAATG---TTGGGCATGAGGATAGGGAGCAGTACCTTCTT---------TGAAATGGCCTGAATGCCAACTACTTGTTTGTTAGATCTGAAAACCACTAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             445376 109 +    563711 GTGTTAGAACGAGCGAGAGAGAC-----------CAGAGCAGTACACTTGGGTACG-----AGGGAGGGAGAGAACTGGGTG-----GC-A---------CTACCTTCTCCGAG----AGTGTG----TTT---GGTCTGAGAACCTCTGA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56157051   1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e cerAty1.NW_012001462v1       482737  10 +   4116138 I

a score=144924.000000
s hg38.chr15_KI270851v1_alt    214373 12 +    263054 GGTGAAGGTTCA
s panTro5.chr15               9611117 12 +  83230942 GGTGAAGGTTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74134771 12 -  99763055 GGTGAAGGTTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       179151 12 -    281578 GGTGAAGGTTCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71041791 12 + 121039945 GGTGAAGGTTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164350074 12 - 169600520 GGTGAAGGTTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165671366 12 - 171882078 GGTGAAGGTTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       524463 12 +   2379783 GGTGAAGGTTCA
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53913589 12 +  58131712 GGTGAAGGTTCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       535106 12 -   3636681 GGTGAAGGTTCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       513403 12 -   4457520 GGTGAAGGTTCC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154543882 12 - 158406734 GGTGAAGGTTCA
i calJac3.chr6              I 308 C 0
s saiBol1.JH378292             376997 12 -   2682657 GGTGAAGGTTAA
i saiBol1.JH378292          C 0 I 2
s cebCap1.NW_016107707v1       402078 12 -   2086007 GGTGAAGGTTAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       463009 12 +   3831555 GGTGAAGGTTAA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             486148 12 +   3845361 GGTGAAGGTTCA
i otoGar3.GL873689          C 0 I 1
s canFam3.chr3               60061955 12 -  91889043 GATGAGAGCTCA
i canFam3.chr3              C 0 I 2
s dasNov3.JH562051             445485 12 +    563711 GATGAGAGTTGA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e cerAty1.NW_012001462v1       482737 10 +   4116138 I

a score=6622.000000
s hg38.chr15_KI270851v1_alt    214385 3 +    263054 --TTT
s panTro5.chr15               9611129 3 +  83230942 --TTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74134783 3 -  99763055 --TTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       179163 3 -    281578 --TTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71041803 3 + 121039945 --TTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164350086 3 - 169600520 --TTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165671378 3 - 171882078 --TTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       524475 3 +   2379783 --TTT
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53913601 3 +  58131712 --TTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       535118 3 -   3636681 --TTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       513415 3 -   4457520 --TTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154543894 3 - 158406734 --TTT
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       402090 3 -   2086007 --ttt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       463021 3 +   3831555 --ttt
i aotNan1.NW_018503298v1    C 0 I 306
s otoGar3.GL873689             486161 2 +   3845361 --TG-
i otoGar3.GL873689          I 1 C 0
s canFam3.chr3               60061969 1 -  91889043 --T--
i canFam3.chr3              I 2 C 0
s dasNov3.JH562051             445497 3 +    563711 GCT--
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56157051 1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e cerAty1.NW_012001462v1       482737 10 +   4116138 I
e saiBol1.JH378292             377009 2 -   2682657 I

a score=3844.000000
s hg38.chr15_KI270851v1_alt    214388 1 +    263054 T
s panTro5.chr15               9611132 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74134786 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       179166 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71041806 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164350089 1 - 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165671381 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       524478 1 +   2379783 C
i macNem1.NW_012011934v1    C 0 C 0
s chlSab2.chr26              53913604 1 +  58131712 C
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       535121 1 -   3636681 C
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       513418 1 -   4457520 C
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154543897 1 - 158406734 T
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       402093 1 -   2086007 t
i cebCap1.NW_016107707v1    C 0 I 516
s aotNan1.NW_018503298v1       463330 1 +   3831555 T
i aotNan1.NW_018503298v1    I 306 C 0
s otoGar3.GL873689             486163 1 +   3845361 T
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60061970 1 -  91889043 C
i canFam3.chr3              C 0 I 9
s dasNov3.JH562051             445500 1 +    563711 C
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56157051 1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e cerAty1.NW_012001462v1       482737 10 +   4116138 I
e saiBol1.JH378292             377009 2 -   2682657 I

a score=322481.000000
s hg38.chr15_KI270851v1_alt    214389 47 +    263054 AAAGGGCC------TG-----GTTGTGTTTCCAGTCTCCCTGGCAGAGATCAA---AAGAC
s panTro5.chr15               9611133 50 +  83230942 AAAGGGCC------TG-----GTTGTGTTTCCAGTCTCCCTGGCAGAGATCAAAAGAAGAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74134787 50 -  99763055 AAAGGGCC------TG-----GTTGTGTTTCCAGTCTCCCTGGCAGAGATCAAAAGAAGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       179167 50 -    281578 AAAGGGCC------TG-----GTTGTGTTTCCAGTCTCCCTGGCAGAGATCAAAAGAAGAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71041807 50 + 121039945 AAAGGGCC------TG-----GTTGTGTTTCCAGTATCCCTGGCAGAGATCAAAAGAAGAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164350090 47 - 169600520 AGAGGGCC------TG-----GTTGTGTTTCCAGCCTCCCTGGCAGAGATAAAGAGAA---
i rheMac8.chr7              C 0 I 16
s macFas5.chr7              165671382 47 - 171882078 AGAGGGCC------TG-----GTTGTGTTTCCAGCCTCCCAGGCAGAGATAAAGAGAA---
i macFas5.chr7              C 0 I 16
s macNem1.NW_012011934v1       524479 47 +   2379783 AGAGGGCC------TG-----GTTGTGTTTCCAGCCTCCCTGGCAGAGATAAAGAGAA---
i macNem1.NW_012011934v1    C 0 I 16
s chlSab2.chr26              53913605 47 +  58131712 AGAGGGCC------TG-----GTTGTGTTTCCAGCCTCCCTGGCAGAGATAAAGAGAA---
i chlSab2.chr26             C 0 I 16
s manLeu1.NW_012102332v1       535122 47 -   3636681 AAAGGGCC------TG-----GTTGTGTTTCCAGCCTCCCTGGCAGAGATAAAGAGAA---
i manLeu1.NW_012102332v1    C 0 I 16
s colAng1.NW_012115278v1       513419 47 -   4457520 AAAGGGCC------TG-----GTTGTGTTTCCAGTCTCCCTGGCAGAGATAAAAAGAA---
i colAng1.NW_012115278v1    C 0 I 3
s calJac3.chr6              154543898 50 - 158406734 CAAGGGCC------TG-----GTTGTGTTTCCAGTCTCCCTGGTAGAGATGAAAAGAGGAC
i calJac3.chr6              C 0 C 0
s aotNan1.NW_018503298v1       463331 50 +   3831555 AAAGGGCC------TG-----GTTGTGTTTCCAGTCTCCCTGGTAGAGATGAAAAGAGGAT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             486164 55 +   3845361 AAAGGGCC------TGCAGGATCTGTATCTCCAGTCTCCCTGGTAGGAAGAGCAGGAAGAA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60061980 54 -  91889043 AAGTGGTCATAGTGTG-----GCAGCGTTTCTAGTCACCT--GTAGAGATAAAAAGAGGAC
i canFam3.chr3              I 9 C 0
s dasNov3.JH562051             445501 49 +    563711 AAAGTGGTGGCAGGTA-----GAAGTGTTTCCAGG-TACCTGAGAGTGACACAGA------
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e cebCap1.NW_016107707v1       402094 516 -   2086007 I
e cerAty1.NW_012001462v1       482737 10 +   4116138 I
e saiBol1.JH378292             377009  2 -   2682657 I

a score=206322.000000
s hg38.chr15_KI270851v1_alt    214436 25 +    263054 GCT--GAGCAACTTGAGAGCACGTGGG
s panTro5.chr15               9611183 25 +  83230942 GCT--GAGCAACTTGAGAGCACGTGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74134837 25 -  99763055 GCT--GAGCAACTTGAGAGCACGTGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       179217 25 -    281578 GCT--GAGCAACTTGAGAGCACGTGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71041857 25 + 121039945 GCT--GAGCAACTTGAGAGCACGTGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164350153 25 - 169600520 GCT--GAGCAAGTTGAGAGCGCGTGGG
i rheMac8.chr7              I 16 C 0
s macFas5.chr7              165671445 25 - 171882078 GCT--GAGCAAGTTGAGATCGCGTGGG
i macFas5.chr7              I 16 C 0
s macNem1.NW_012011934v1       524542 25 +   2379783 GCT--GAGCAAGTTGAGAGCGCGTGGG
i macNem1.NW_012011934v1    I 16 C 0
s cerAty1.NW_012001462v1       482747 25 +   4116138 GCT--GAGCAAGTTGAGAGCACGTGGG
i cerAty1.NW_012001462v1    I 10 C 0
s chlSab2.chr26              53913668 25 +  58131712 GCT--AAGCAAGTTGAGAGCACGTGGG
i chlSab2.chr26             I 16 C 0
s manLeu1.NW_012102332v1       535185 25 -   3636681 GCT--GAGCAAGTTGAGAGCACGTGGG
i manLeu1.NW_012102332v1    I 16 C 0
s colAng1.NW_012115278v1       513469 25 -   4457520 GCT--GAGCAAGTTGAGAGCACGTGGG
i colAng1.NW_012115278v1    I 3 C 0
s calJac3.chr6              154543948 24 - 158406734 GCT--GGGCAACGTGAGAGCATGTGG-
i calJac3.chr6              C 0 C 0
s aotNan1.NW_018503298v1       463381 25 +   3831555 GCT--GGGCAACGTGAGAGCATGTGGG
i aotNan1.NW_018503298v1    C 0 I 13
s otoGar3.GL873689             486219 25 +   3845361 GCT--GAGCAGTTTCGGAGTGTGTCAG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60062034 27 -  91889043 ACTTAGAGCAACTAAAGAGTGAATTGG
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             445550 23 +    563711 --T--GTCCTCCCTGAGCACACGAGGG
i dasNov3.JH562051          C 0 I 3
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e cebCap1.NW_016107707v1       402094 516 -   2086007 I
e saiBol1.JH378292             377009  2 -   2682657 I

a score=45190.000000
s hg38.chr15_KI270851v1_alt    214461 18 +    263054 ----GCGGTGCACGTGCTCCCT
s panTro5.chr15               9611208 14 +  83230942 ----GTGGCGCA-GAG---CCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74134862 18 -  99763055 ----GTGGTGCACGTGCTCCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       179242 18 -    281578 ----GTGGTGCACGTGCTCCCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71041882 14 + 121039945 ----GTGGTGCACAG----CCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164350178 14 - 169600520 ----GTGGTGCACAG----CCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165671470 14 - 171882078 ----GTGGTGCACAG----CCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       524567 14 +   2379783 ----GTGGTGCACAG----CCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       482772 14 +   4116138 ----GTGGTGCACAG----CCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53913693 14 +  58131712 ----GTGGTGCACAG----CCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       535210 14 -   3636681 ----GTGGTGCACAG----CCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       513494 13 -   4457520 ----GTGGTGCACAG----CC-
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154543972 12 - 158406734 ----GTGGTGCA--G----TCT
i calJac3.chr6              C 0 C 0
s otoGar3.GL873689             486244 14 +   3845361 ----GCGGGGCCCAG----CCT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60062061 14 -  91889043 ----GCAGAATGCAA----CCT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             445576 12 +    563711 TCGGAGGGTGTG----------
i dasNov3.JH562051          I 3 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e aotNan1.NW_018503298v1       463406 13 +   3831555 I
e cebCap1.NW_016107707v1       402094 516 -   2086007 I
e saiBol1.JH378292             377009  2 -   2682657 I

a score=621360.000000
s hg38.chr15_KI270851v1_alt    214479 81 +    263054 GCAGTCATGCTGGGAGATGCCGAGTGTGAA-------CACCTAGAAGGCCGTGTAGAGTTGTTCTTCAGGAACTGAGAAGGACTGTTG
s panTro5.chr15               9611222 81 +  83230942 GCGGTCATGCTGGGAGATGCCGAGTGTGAA-------CACCTAGAAGGCCGTGTAGAGTTGTTCTTCAGGAACTGAGAAGGACTGTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74134880 81 -  99763055 GCAGTCATGCTGGGAGATGCCAAGTGTGAA-------CAACTGGAAGGCTGTGTAGAGTTGTCCTTCAGGAACTGAGAAGGACTGTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       179260 81 -    281578 GCAGTCATGCTGGGAGATGCCAAGTGTGAA-------CAACTGGAAGGCTGTGTAGAGTTATCCTTCAGGAACTGAGAAGGACTGTTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71041896 81 + 121039945 GCAGTCATGCTGGGAGATGCCGAGTGTGAA-------CACCTAGAAGGCCATGTAGAGTTGTCCTTCAGGAACTGGGAAGGACTGTTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164350192 81 - 169600520 GCAGTCATGCTGGGAGATGCCGAAGGTTAA-------CACCTAGAAGGCCACGTAGAGTTGTCTTTCAGGAATTGCAAAGGACTGTTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165671484 81 - 171882078 GCAGTCATGCTGGGAGATGCCGAAGGTTAA-------CACCTAGAAGGCCACGTAGAGTTGTCTTTCAGGAATTGCAAAGGACTGTTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       524581 81 +   2379783 GCAGTCATGCTGGGAGATGCCGAATGTTAA-------CACCTAGAAGGCCACGTAGAGTTGTCTTTCAGGAATTGCAAAGGACTGTTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       482786 81 +   4116138 GTAGTCATGCTGGGAGATGCCGAATGTTAA-------CACCTAGAAGGCCACGTAGAGTTGTCTTTCAGGAATTGCGAAGGACTGTTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53913707 81 +  58131712 GCAGTCATGCTGGGAGATGCCGAATGTTAA-------CACCTAGAAGGCCACGTAGAGTTGTCTTTCAGGAATTGCGAAGGACTGTTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       535224 81 -   3636681 GTAGTCATGCTGGGAGATGCCGAATGTTAA-------TACCTAGAAGGCCACGTAGAGTTGTCTTTCAGGAATTGCGAAGGACTGTTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       513507 74 -   4457520 -------TGCTGGGAGATGCCGAATGTTGA-------CACCTAGAAGGCCACGTAGAGTTGTCTTTCAGGAATTGCGAAGGACTGTTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154543984 78 - 158406734 GCAGTCATG-TGAGAGGTGCCGAGTGTGCA--------ACCTCGGAGGCCACGTAGAGTTGTCCTTCA-GAATTGGGAAGGGCTGTTG
i calJac3.chr6              C 0 C 0
s aotNan1.NW_018503298v1       463419 81 +   3831555 GCAGTCGTGCTGGGGGGTACCGAGTGTGCA-------GGCCTCGGAGGCCACGTAGAGTTGTCCTTCAGGAATTGGGAAGGGCTGTTG
i aotNan1.NW_018503298v1    I 13 I 41
s otoGar3.GL873689             486258 71 +   3845361 GTGTCCAGCCGGGAGGAGGCCGCCTGCTAA-------GATGAAGAAGGGAAGGCAGAGCTGTC--------ATTGCAAAGAGAGGC--
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60062075 88 -  91889043 GGAATCACACTGGGAGGTGCCCAGTGTTAAGAGGAAAGATGTAGAAGGAAATGTAGAGTTATCCTTTAAGAATTGGGAAGGACTTTTG
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             445588 71 +    563711 ------GGGCTGAGTGCACCTGTGTGAAGG-------TACAGAGGGAGCC----AGAGCTGTCTTAAGGGAAGTGGGAAAGGATGTTT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e cebCap1.NW_016107707v1       402094 516 -   2086007 I
e saiBol1.JH378292             377009  2 -   2682657 I

a score=450456.000000
s hg38.chr15_KI270851v1_alt    214560  67 +    263054 TAC-Aaaaaaagaccttccgctgttttgtctccatggattccgatggagagt----cgttgttctcatctct-----------------------------
s panTro5.chr15               9611303  67 +  83230942 TAC-AAAAAAAGACCttccgctgttttgtctccatggattccgatggagagt----cgttgttctcatctct-----------------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74134961  67 -  99763055 TAC-AAAAAGAGACCttccgctgttttgtctccatggattccgatggagagt----tgttgttctcatctct-----------------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       179341  67 -    281578 TAC-AAAAAGAGACCttccgctgttttgtctccatggattctgatggagagt----tgttgttctcatctct-----------------------------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71041977  66 + 121039945 TAC--AAAAGAGACCttccgctgttttgtctccatggattccgatggagagt----cattgttcttatctct-----------------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164350273  65 - 169600520 TACCAAAAAGAGACCttccgctgttttgtctccatggattccgatggaaagt----c---gttcttatctct-----------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165671565  68 - 171882078 TACCAAAAAGAGACCttccgctgttttgtctccatggattccgatggaaagt----cgttgttcttatctct-----------------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       524662  68 +   2379783 TACCAAaaagagaccttccgctgttttgtctccatggattccgatggaaagt----cgttgttcttatctct-----------------------------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       482867  68 +   4116138 TACCAAAACGAGACCttccgctgttttgtctccatggattccgatggaaagt----cgttgttcttatctct-----------------------------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53913788  68 +  58131712 TACCAAAAAGAGACCttccgctgttttgtctccatggattccgatggaaagt----cgttgttcttatctct-----------------------------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       535305  68 -   3636681 TACCAAAACGAGACCttccgctgttttgtctccatggattccgatggaaagt----cgttgttcttatctct-----------------------------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       513581  65 -   4457520 TACCAAAAAGAGACCttccgctgttttgtctccatggattctgatggaaagt----t---gttcttatctct-----------------------------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154544062  69 - 158406734 CAC-CAAAAGGGACCCTCTG-TGGTTGAGctccgtggattctgatggaaagt-ggctgttgttcttacctct-----------------------------
i calJac3.chr6              C 0 C 0
s otoGar3.GL873689             486329  60 +   3845361 --------AGAGGCCT---GTTGTTTTGAGtccgttggttatgatgggaagttggccgtcattcttaacct------------------------------
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60062163  68 -  91889043 TAGCAAAGAGAGATCtttcattgttttgtcttcattgattctaatggaaattcagccatcattctttt---------------------------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             445659 100 +    563711 TATGAAAGAGGGATTGTCCATTATTTGTCCTCCATTGATTATGATGAAAACT-TGCCATTATTCTTCTCTTTGTAGTGGCTTGttttcttcttctttattt
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56157051   1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e aotNan1.NW_018503298v1       463500  41 +   3831555 I
e cebCap1.NW_016107707v1       402094 516 -   2086007 I
e saiBol1.JH378292             377009   2 -   2682657 I

a score=143299.000000
s hg38.chr15_KI270851v1_alt    214627 15 +    263054 tcttttgtatg------------aaat
s panTro5.chr15               9611370 15 +  83230942 tcttttgtatg------------aaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74135028 15 -  99763055 tcttttgtatg------------aaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       179408 15 -    281578 tcttttgcatg------------aaat
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71042043 15 + 121039945 tcttttgtatg------------aaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164350338 15 - 169600520 tcttttgtatg------------aaat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165671633 15 - 171882078 tcttttgtatg------------aaat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       524730 15 +   2379783 tcttttgtatg------------aaat
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       482935 15 +   4116138 tcttttgtatg------------aaat
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53913856 15 +  58131712 tcttttgtatg------------aaat
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       535373 15 -   3636681 tcttttgtatg------------aaat
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       513646 15 -   4457520 tcttttgtatg------------aaat
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154544131 12 - 158406734 ---tctgtatg------------ggat
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       402610 15 -   2086007 tcttctgtatg------------gaat
i cebCap1.NW_016107707v1    I 516 C 0
s aotNan1.NW_018503298v1       463541 15 +   3831555 tcttctgtatg------------gaat
i aotNan1.NW_018503298v1    I 41 C 0
s otoGar3.GL873689             486389 12 +   3845361 ttattcgcctg---------------t
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60062231 15 -  91889043 tgttctgtatg------------aaat
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             445759 27 +    563711 tcttttaaatgttacattaaaaaaaat
i dasNov3.JH562051          C 0 I 130
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e saiBol1.JH378292             377009  2 -   2682657 I

a score=905259.000000
s hg38.chr15_KI270851v1_alt    214642  93 +    263054 --------------------------gtctgt---tttctctggttgctttt-cgt--------attttgtg-ttatctttggttttctgcagtttccctaagctgggctcatgtatgcaatggtggcccac--
s panTro5.chr15               9611385  93 +  83230942 --------------------------gtctgt---tttctctggttgctttt-cgt--------attttctg-ttatctttggttttctgcagtttcactaagctgggctcatgtatgcaatggtggcccac--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74135043  93 -  99763055 --------------------------gtctgt---tttctctggttgctttt-cgt--------attttctg-ttatctttggttttctgcagtttcactaagctgggctcatgtatgcaatggtggcccac--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       179423  93 -    281578 --------------------------gtcttt---tttctgtggttgctttt-cgt--------attttcta-ttatctttggttttctgcagtttccctaagctgggctcatgtatgcaatggtggcacac--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71042058  93 + 121039945 --------------------------gccttt---tttctctggttgctttt-cgt--------attttctg-ttatctttggttttctgcagtttccctaagctgggctcatgtatgcaatggtggcccac--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164350353  93 - 169600520 --------------------------gtcttt---tttctctggttgctttt-cgt--------attttctg-ttatctttggttttctgcagtttcactgagctgggctcatgtatgccatggtggcccac--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165671648  93 - 171882078 --------------------------gtcttt---tttctctggttgctttt-cgt--------attttctg-ttatctttggttttctgcagtttcactgagctgggctcatgtatgccatggtggcccac--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       524745  93 +   2379783 --------------------------gtcttt---tttctctggttgctttt-cgt--------attttctg-ttatctttggttttctgcagtttcactgagctgggctcatgtatgccacggtggcccac--
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       482950  93 +   4116138 --------------------------gtcttt---tttctctggttgctttt-tgt--------attttctg-ttatctttggttttctgcagtttcactgagctgggctcatgtatgccatggtggcccac--
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53913871  93 +  58131712 --------------------------gtcttt---tttctctggttgctttt-cgt--------attttctg-ttatctttggttttctgcagtttcactgagctgtgctcatgtatgccatggtggcccac--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       535388  93 -   3636681 --------------------------gtcttt---tttctctggttgctttt-cgt--------attttctg-ttatctttggttttctgcagtttcactgagctgggctcatgtatgccgtggtggcccac--
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       513661  93 -   4457520 --------------------------gtcttt---tttctctggttgctttt-cgt--------attttctg-ttatctctggttttctgcagtttcactgagctgggctcatgtatgccatggtggcccac--
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154544143  85 - 158406734 --------------------------gtcttt---tttctctggttgcttcg-agt--------attttctg-ctatctttggctttctgcagtttcactaAGCCCGGCC--------ATGTGGTGGCCCGC--
i calJac3.chr6              C 0 I 2540
s cebCap1.NW_016107707v1       402625  93 -   2086007 --------------------------gtcttt---tttccctggttgcttcg-agt--------attttctg-ctatctttggctttctgcagtttcactaaaccgggcccatgtatgccgtggtggctcac--
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       463556  93 +   3831555 --------------------------gccttt---tttctctggttgcttcg-agt--------attttctg-ctatctttggctttctgcagtttcactaagccgggcccgtgtatgccgtggcggcctgc--
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             486401  93 +   3845361 --------------------------gtcttt---tttctctggctcctttt-ggt--------attttctgtttttctttggttttctgcagcttggctaagatgtgctgaggtgtgc-atggtggtgtcc--
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60062246  96 -  91889043 --------------------------gcctttccccccctctggctgcattt-aatatttcataattttttg-ttttgttttgttttctgcagtttggctaagatgtgt--atgtat---atttttgcc-----
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             445916 115 +    563711 gtctacactctccccTCTTTGTAgtggctttt---tcaccttggatacttttaaat--------gttttctatttttctttggttttctgcagtttgactaagatgtgccaatgt--------gttgttcatgt
i dasNov3.JH562051          I 130 C 0
e mm10.chr7                  56157051   1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e saiBol1.JH378292             377009   2 -   2682657 I

a score=3180631.000000
s hg38.chr15_KI270851v1_alt    214735 395 +    263054 cccgcccaccccaccatcctccttgaaatttatttaagctgcttgcatctttggcttgat-tttt-------gttcccctaccaaatttggaaactt-ttgactgctgtttttttcccc--gtcttgc--tctttttgttcttttct-ggaaatactattatacatctgt-tacacggttagtgagtttccttttatgactttaatagaaagtc-tttcttctccttgttagt-agcttggttagtttgtcttgatctgtttgaaaggtcaagatgctttgctt--tgttgggcctaatctgttgttatatccatccaagacatactttattttatatttctcacatctcttatttccatttgg-ctctcatttaatagttttatatctcttctgacagttcctttcttcatcct
s panTro5.chr15               9611478 395 +  83230942 cccgcccaccccaccatcctccttgaaatttgctgaagctgcttgcatctttggcttgat-tttt-------gttcccctaccaaatttggaaacat-ttgactgttgtttttttccccctgccttgc--tctttttgttcttttct-ggaaatactattatacatctgt-tacacggttagt--gtttccttttatgactttaatagaaagtc-tttcttctccttgttagt-agcttggttagtttgtcttgatctgtttgaaaggtcgagatgctttgctt--tgttgggcctaatctgttgttatatccatccaagacatactttattttatatttctcacatctcttatttccatttgg-ctctcatttaatagttttatatctcttctgacagttcctTTCTTCATCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74135136 391 -  99763055 cccgcccaccccaccgtcctccttgaaatttgctgaagctgcttgcatctttggcttgat-tttt-------gttcccctaccaaatttggaaactt-ttgactattgttttttccccc-tgccttgc--tctttttgttcttttct-ggaaatactattatacatctgt-tacactgttagtgagtttccttttacgactttaatagaaag-----tcttctccttgttagt-agcttggttagtttgtcttgatctgtttgaaaggtcaagatgctttgctt--tgttgggcctaatctgttgttatgtccatccaagacatactttattttatatttctcacatctcttatttccatttgg-ctctcatttaatagttttatatctcttccgacagtt-ctttcttcatcct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       179516 392 -    281578 cccgcccaccccaccgtcctccttgaaatttgctgaagctgcttgcatctttggcttgat-tttt-------gttcccctaccaaatttggaaactt-ttgactattgttttttccccc-tgccttgc--tctttttgttcttttct-ggaaatactgttatacatctgt-tacactgttagtgagtttccttttacgattttaatagaaag-----tcttctccttgttagt-agcttggttagtttgtcttgatctgtttgaaaggtcaagatggtttgctt--tgttgggcctaatctgttgttatgtccatccaagacatactttattttatatttctcacatctcttatttccatttgg-ctctcatttaatagttttatatctcttctgacagctcccttcttcatccc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71042151 396 + 121039945 cccgcccaccccactgtcctccttgaaatttgcttaagctgcttgcatctttggcttgat-tttt-------gttccactaccaaatttggaaactt-ttgactattgtttcttccctc-tgtcttgc--tctttttgttcttttct-ggaaataccattatacatctgt-tacactgttagtgagtttccttttacgattttaatagaaagtc-tttcttctctttgttagt-agcttggttggtttgtcttgatctgtttgaaaggtcaagatgctttgctt--tgttgggcctaatctcttgttatgtccatccaagacatactttattttatatttctcacatctcttatttccatttgg-ctttcatttaatagttttatatctcttctgacagttcctgtcttcatccc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164350446 391 - 169600520 cccacccatcccaccatcctccttgaaatttgcttaagctgcttgcatctttggcttgat-tttt-------gttcccttaccaaatttggaaactt-ttgactattgttttttcccct--atcttgc--tccttttgttcttttct-ggaaatactcttatacatctgt-tacactgttagtgag-ttccttttaggattttaatagaaagtc-ttttttctcattgttagt-agcttggttagtttctcttgatctgtttgaaaggtcaagatgctttgctt--tgttgggcctaatc---tgttaagtccatccaagaaatactttattttatatttctcacatctcttatttccatttgg-ctctcatttaatagttttatatctcttctgatagttcctatcgtcatccc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165671741 391 - 171882078 cccacccatcccaccatcctccttgaaatttgcttaagctgcttgcatctttggcttgat-tttt-------gttcccttaccaaatttggaaactt-ttgactattgttttttcccct--atcttgc--tccttttgttcttttct-ggaaatactcttatacatctgt-tacactgttagtgag-ttccttttaggattttaatagaaagtc-ttttttctcattgttagt-agcttggttagtttctcttgatctgtttgaaaggtcaagatgctttgctt--tgttgggcctaatc---tgttaagtccatccaagaaatactttattttatatttctcacatctcttatttccatttgg-ctctcatttaatagttttatatctcttctgatagttcctatcgtcatccc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       524838 390 +   2379783 cccacccatcccaccatcctccttgaaatttgcttaagctgcttgcatctttggcttgat-tttt-------gttcccttaccaaatttggaaactt-ttgactattgttttttcccct--atcttgc--tccttttgttcttttct-ggaaatactcttatacatctgt-tacactgttagtgag-ttccttttaggattttaatagaaagtc-ttttttctcattgttagt-agcttggttagtttctcttgatctgtttgaaaggtcaagatgctttgctt--tgtttggcctaatc---tgttaagtccatctaagaaatactttattttatatttctcacatctcttatttccatttgg-ctctcatttaatagttttatatctcttctgatagtt-ctatcgtcatccc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       483043 388 +   4116138 cccacccatcccacca---tccttgaaatttgcttaagctgcttgcatctttggcttgat-tttt-------gttcccttaccaaatttggaaactt-ttgactattgttttttccccc--atcttgc--tccttttgttcttttct-ggaaatactcttatacatctgt-tacactgttagtgag-ttccttttaggattttaatagaaagtc-ttttttctcattgttagt-agcttggttagtttctcctgatctgtttgaaaggtcaagatgctttgctt--tgttgggcctaatc---tgttaagtccatccaagaaatactttattttatatttctcacatctcttatttccatttgg-ctctcatttaatagttttacatctcttctgacagttcccatcgtcatccc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53913964 392 +  58131712 cccacccatcccgccatcctccttgaaatttgcttaagctgcttgcatctttggcttgat-tttt-------gttcccttaccaaatttggaaactt-ttgactattgttttttccccc--atcttgc--tccttttgttcttttct-ggaaatactcttacatatctgt-tacactgttagtgag-ttccttttaggattttaatagaaagtctttttttctcattgttagt-agcttggttagtttgtcttgatctgtttgaaaggtcaagatgctttgctt--tgttgggcctaatc---tgttatgtccatccaagaaatactttattttatatttctcacatctcttatttccatttgg-ctctcatttaatagttttatatttcttctgacagttcccatcttCATCCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       535481 387 -   3636681 cccacccatcccacca---tccttgaaatttgcttaagctgcttgcatctttggcttgat-tttt-------gttcccttaccaaatttggaaactt-ttgactattgttttttccccc--atcttgc--tccttttgttcttttct-ggaaatactcttatacatctgt-tacactgtttgtgag-ttcc-tttaggattttaatagaaagtc-ttttttctcattgttagt-aggttggttagtttctcttgatctgtttgaaaggtcaagatgctttgctt--tgttgggcctaatc---tgttaagtccatccaagaaatactttattttatatttctcacatctcttatttccatttgg-ctctcatttaatagttttatatctcttctgacagttcccatcgtcatccc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       513754 394 -   4457520 cccacccatcccaccatcctccttgaaatttgcttcagctgcttgcatctttggcttgat-tttt-------gttcccctaccaaactgggaaactt-ttgactgttgttttttccccc--gtcttgc--tctttttgttcttttct-ggaaatactcttatacatctgt-tacactgttagtgagtttccttttagaattttaatggaaagtc-ttttttctcgttgttagt-agcttggttagtttgtcttgacctgtttgaaaggtcaagatgctttgctttgtgttgggcctaatc---tgttatgtccatccaagaaatactttattttatatttctcacatctcttatttccatctgg-ctctcatttaatagttttatatctcttctgacagttcccatgttcatccc
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       402718 382 -   2086007 ---------cccactgtcgtccttgacatttgcttaagctgcttgcatttttggcttgat-tttt-------gttcccctaacaaatttggaaagtt-ttgactgttatattt--cccc--gtcttgc--tctttttgttctttcct-ggaaatactcttatacaactgt-tacgctgttagtgagtttccttttaggagtttaatagaaagtc-ttttttttccttgtttgt-agcttgattagtttgtctggacctgtttgaaaggtcaagat-ctttgctt--tgttgggcctaatctgttgttatgtccatccgagaaatgctttattttctatttgttacatctcttatttccatttgg-ctctcattttataattttagatctcttctgacagttcctttcttca-ccc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       463649 384 +   3831555 ---------cccactgtcgtccttgacatttgcttaagctgcttgcatttttggcttgat-tttt-------gttcccctaacaaatctgtaaacgt-ttgactgttatattt--cccc--gtcttgc--tctttttgttcttttct-ggaaatactattatacatctgt-tacactgttagtgagtttccttttacgagtttaatagaaagtc-tttttcttccttgttagt-agcttgattagtttgtctggatgtgtttgaaaggtcaagatcctttgctt--tcttgggcctaatctgttgttacgtccatccaagaaatgctttagtttctatttcttacatctcttgtttccatttgg-ctctcattttataattttagatctcttctgacagttgccttcttcacccc
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             486494 370 +   3845361 ------------tccgtcctctttgggatttgcttgtgttatctatacccgtgatgtgat-tcct-------cttttcctaccaaatttggaaactt-ttgaccattgttttttctcct-tgtcttgctgtcctttttttcttttat-gggactgccattataca--tgt-gagactgctagt----ttcttcccatcgttttca---aaatct-ttttttgtctttattaatcagcttagttaatttgaggtgatctgttttcaaggtcaAGGTGCTCTGCAT--TTTTGGGTCTGCTCTACTGTCCTGCTTATCCAAGAAATGCCTCGGGTTGT-----TCAGCTCTCGTGTTTCCACTTAG-TGTTCTTTCTGGAGTTTGATCCGTCTCCTGACAGCTC---TCCTCACCCT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60062342 331 -  91889043 -------------ccatcctc-ttgggatacact-aacttacttgtatctctggcttgatatttt-------cccctgccaccaaatttggaaacgtgttaactattttttcCTGTTCT--GTT---C--TCATTTTGTTCTTTGCTAAGAAAGATTATTA-------------------AAtgagtttctgtttg----ttttgtagg----t-ctttttcttttggttaattatcttggataa-ttgtattggtttgttttcagggtcaggctg-tctgctt--tgttgggtctaaatt--tg------ccatctaagaaattctttattttgtattt-tcagatctcatatttccatttggattcttactttatagttctatagctctcctgacagtt--------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             446031 344 +    563711 ttctaccatcccatc----tgcttgaggttcccttaagttacttgcagctgtggattgat-tcattccacccgtcctcctcctaaacttggaaactt-tttgc--ccattttttcccct--gct---c--tctttttgtccttttct-gggactacattga--catctgtgcagatagttactgaggctttatttattattttt-taaa------tgtcttttccatattagtcagtctgattgattcgtattgaatcatttttaaggttagaatcctttgctt--tgttgggtctaatcagctattaag-ccattcaAGAAATTCTTT---------TTTTAAAAACATTTATTT--ATTTAC-TCCTC----------------TCCCCACCCCCAGT---------------
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56157051   1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e saiBol1.JH378292             377009   2 -   2682657 I
e calJac3.chr6              154544228 2540 - 158406734 I

a score=52624.000000
s hg38.chr15_KI270851v1_alt    215130 21 +    263054 ttaagtctatctttttttttt
s panTro5.chr15               9611873 17 +  83230942 TTAAGTCTATC----tttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74135527 14 -  99763055 ttaagtctatc-------ttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       179908 17 -    281578 ttaagtctatg----tttttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71042547 11 + 121039945 ttaagtctgtc----------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164350837 11 - 169600520 ttaagtctatc----------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165672132 11 - 171882078 ttaagtctatc----------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       525228 11 +   2379783 ttaagtctatc----------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       483431 11 +   4116138 ttaagtctatc----------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53914356 11 +  58131712 TTAAGTCTAAC----------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       535868 11 -   3636681 ttaagtctatc----------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       514148 11 -   4457520 ttaagtctatc----------
i colAng1.NW_012115278v1    C 0 C 0
s cebCap1.NW_016107707v1       403100 17 -   2086007 ttaaatctatc----tttttt
i cebCap1.NW_016107707v1    C 0 I 7
s aotNan1.NW_018503298v1       464033 17 +   3831555 ttaaatctatc----cttttt
i aotNan1.NW_018503298v1    C 0 I 4
s canFam3.chr3               60062673 16 -  91889043 -tgtatctctc----cactct
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             446375 17 +    563711 TTGAGGGTTTT----TTTTTT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e otoGar3.GL873689             486864  0 +   3845361 C
e saiBol1.JH378292             377009  2 -   2682657 I
e calJac3.chr6              154544228 2540 - 158406734 I

a score=21320.000000
s hg38.chr15_KI270851v1_alt    215151 9 +    263054 ttttt-tttt
s panTro5.chr15               9611890 9 +  83230942 tcttt-tttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74135541 9 -  99763055 tttct-tttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       179925 9 -    281578 ttttt-tttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71042558 4 + 121039945 ------tttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164350848 5 - 169600520 ----c-tttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165672143 5 - 171882078 ----c-tttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       525239 5 +   2379783 ----c-tttt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       483442 5 +   4116138 ----c-tttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53914367 6 +  58131712 ----Cttttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       535879 5 -   3636681 ----c-tttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       514159 6 -   4457520 ----cttttt
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             377011 9 -   2682657 ttttt-tatt
i saiBol1.JH378292          I 2 C 0
s cebCap1.NW_016107707v1       403124 9 -   2086007 ttttt-tatt
i cebCap1.NW_016107707v1    I 7 C 0
s aotNan1.NW_018503298v1       464054 6 +   3831555 ---tt-tgtt
i aotNan1.NW_018503298v1    I 4 C 0
s canFam3.chr3               60062689 9 -  91889043 ttatt-tttt
i canFam3.chr3              C 0 I 12
s dasNov3.JH562051             446392 9 +    563711 GTTGT-TTTT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56157051 1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e otoGar3.GL873689             486864 0 +   3845361 C
e calJac3.chr6              154544228 2540 - 158406734 I

a score=198098.000000
s hg38.chr15_KI270851v1_alt    215160 31 +    263054 ttttttttgatg--gagtcttgctctg-tca----cca
s panTro5.chr15               9611899 31 +  83230942 ttttttttgatg--gagtcttgctctg-tca----cca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74135550 31 -  99763055 ttttttgtgatg--gagtctcgctctg-tct----cca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       179934 31 -    281578 ttttttttgacg--gagtcttgctctg-tca----cca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71042562 31 + 121039945 ttttttttgacg--gagtcttgctctg-tcg----cca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164350853 31 - 169600520 ttttattagacg--gagtcttgctctg-tca----cca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165672148 31 - 171882078 ttttattagacg--gagtcttgctctg-tca----cca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       525244 31 +   2379783 ttttattagacg--gagtcttgctctg-tca----ccg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       483447 31 +   4116138 tttgattagacg--gagtctcgctctg-tca----cca
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53914373 31 +  58131712 tttttttagacg--gagtctcgctctg-tca----cca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       535884 31 -   3636681 ttttattagacg--gagtctcgctctg-tca----cca
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       514165 31 -   4457520 tttttttagacg--gagtcttgctctg-tca----cca
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             377020 30 -   2682657 g--tttgaaaca--gagt---gatctg-ttagtcgcta
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       403133 32 -   2086007 gtttttgagaca--gagtctcactctg-tca---ccca
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       464060 32 +   3831555 ttttttgagaca--gagtctcgctctt-ttg---ccca
i aotNan1.NW_018503298v1    C 0 C 0
s dasNov3.JH562051             446401 34 +    563711 TTGtttttaatgatgagtttatttttgttca----cca
i dasNov3.JH562051          C 0 I 291
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e canFam3.chr3               60062698 12 -  91889043 I
e otoGar3.GL873689             486864  0 +   3845361 C
e calJac3.chr6              154544228 2540 - 158406734 I

a score=425010.000000
s hg38.chr15_KI270851v1_alt    215191 49 +    263054 ggctggagtgcagtggcgtgatctcagctcactgcaacctctgactcct
s panTro5.chr15               9611930 49 +  83230942 ggctggagtgcagtggcgcgatctcagctcactgcaacctctgactccT
i panTro5.chr15             C 0 I 100
s panPan2.chr15              74135581 49 -  99763055 ggctggagtgcagtggcgtgatctcagctcactgcaacctctgactcct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       179965 49 -    281578 ggctggagtgcagtggcgtgatctcagctcactgcaacctctgactctt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71042593 49 + 121039945 ggctggagtgcagtggcgtgatctcagctcactgcaatctctgactcct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164350884 49 - 169600520 ggctggagtgcattggcatgatctcggctcactgcaacctctgacttct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165672179 49 - 171882078 ggctggagtgcattggcatgatctcggctcactgcaacctctgacttct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       525275 49 +   2379783 ggctggagtgcattggcatgatctcggctcactgcaacctctgacttct
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       483478 49 +   4116138 gactggagtgcattggcatggtctcggctcactgcaacctctgacttct
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53914404 49 +  58131712 ggctggagtgcagtggcacgatctcagctcactgcaacctctgacttct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       535915 49 -   3636681 ggctggagtgcattggcatgatctcggctcactgcaacctctgacttct
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       514196 49 -   4457520 ggctggagtgcagtggcgtgatctcggctcactgcaacctctgacttct
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             377050 49 -   2682657 agctagagtgcagtggtgcgatctccgctcactgcaacctctgcctccc
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       403165 49 -   2086007 ggctggagtgcagtggcacgatctcagctcactgcaacctctgcctcca
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       464092 49 +   3831555 ggctggagtgcagtggcgcgatctcagctcactgcaacctctgcctcga
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e dasNov3.JH562051             446435 291 +    563711 I
e canFam3.chr3               60062698 12 -  91889043 I
e otoGar3.GL873689             486864  0 +   3845361 C
e calJac3.chr6              154544228 2540 - 158406734 I

a score=373486.000000
s hg38.chr15_KI270851v1_alt    215240 49 +    263054 gggttcaggtgattctcctgcctcagcctcccgagtagctaggactaca
s panPan2.chr15              74135630 49 -  99763055 gggttcaggtgattctcctgcctcagcctcccgagtagctaggactaca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       180014 49 -    281578 gggttcaagtgattctcctgcctcagcctcctgagtagctaggactaca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71042642 49 + 121039945 gggttcaagtgattttcctgcctcagcctcccgagtagctaggactaga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164350933 49 - 169600520 gggttcaagtgattctcctgcctcagcctcccgagtagctgggactaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165672228 49 - 171882078 gggttcaagtgattctcctgcctcagcctcccgagtagctgggactaca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       525324 49 +   2379783 gggttcaagtgattctcctgcctcagcctcccgagtagctgggactaca
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       483527 49 +   4116138 gggttcgagtgattctcctgcctcagcctcccgagtagctgggactaca
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53914453 49 +  58131712 gggttcaagtgattctcctgcctcagcctcccgagtagctgggactaca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       535964 49 -   3636681 gggttcaagtgattttcctgcctcagcctcccgagtagctgggactaca
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       514245 49 -   4457520 gggttcaagtgattctcctgcctcagcctcctgagtagctgggactgca
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             377099 49 -   2682657 aggttcaggtgattctcctgcctcggcctcccaagtagctgagactaca
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       403214 48 -   2086007 gggttcaagcgattcttctgcctcagcct-ccgagttgctgggactaca
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       464141 48 +   3831555 gggttcaagcgattcttctgcctcagcct-ccgagtcgctgggactact
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e dasNov3.JH562051             446435 291 +    563711 I
e canFam3.chr3               60062698 12 -  91889043 I
e otoGar3.GL873689             486864  0 +   3845361 C
e panTro5.chr15               9611979 100 +  83230942 I
e calJac3.chr6              154544228 2540 - 158406734 I

a score=1108299.000000
s hg38.chr15_KI270851v1_alt    215289 167 +    263054 ggtgcctgccaccatgcctggctaatttttgtatatttagtagagatggggttttaccatgttggccaggctggtctc-gaactcctgacctcatgatctgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccgtgcctggccaaatctatctt
s panPan2.chr15              74135679 165 -  99763055 ggtgcctgccac-acgcctggctaatttt-gtatatttagtagagatggggttttaccatgttggccaggctggtctc-gaactcctgacctcatgatccgccctcctcgggctcccaaagtgctgggattacaggtgtgagccaccgtgcctggccaaatctatctt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       180063 167 -    281578 ggtgcctgccaccacgcctggctaatttttgtatatttagtagagatggggttttaccatgttggccaggctggtctc-gaactcctgacctcatgatctgccctcctcgggctcccaaagtgctgggattacaggtgtgagccaccatgcctggccaaatctatctt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71042691 167 + 121039945 ggtgcctgccaccacgcttggctaatttttgtatatttagtagagatgggattttaccatgttggccaggctggtctc-gaactcctgacctcatgatccgcccgcctcgggctcccaaagtgctgggattacaggtgtgagccaccgtgcccggccaagtctatctt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164350982 167 - 169600520 ggtgcccgctaccacgcccggctaatttttgtatatttagtagagctagggtttcaccatgttagccaggctggtctt-gaactcctgacctcgtgatccacccaccttggcctcccaaagtgctgggattacaggtgtgagccaccacacctggccaaatctgtctt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165672277 167 - 171882078 ggtgcccgctaccacgcccggctaatttttgtatatttagtagagctagggtttcaccatgttagccaggctggtctt-gaactcctgacctcgtgatccacccaccttggcctcccaaagtgctgggattacaggtgtgagccaccacacctggccaaatctgtctt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       525373 167 +   2379783 ggtgcccgctaccacgcccggctaatttttgtatatttagtagagctagggtttcaccatgttagccaggctggtctt-gaactcctgacctcgtgatccacccaccttggcctcccaaagtgctgggattacaggtgtgagccaccacacctggccaaatctgtctt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       483576 167 +   4116138 ggtgcccgctaccacgcccggctaatttttgtatatttagtagagatagggtttcaccatgttagccaggctggtctt-taactcctgacctcgtgatccacccaccttggcctcccaaagtgctgggattacaggtgtgagccaccacgcctggccaaatctgtctt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53914502 167 +  58131712 ggtgcccgccaccacgcctggctaatttttgtatatttagtagagatagggtttcaccatgttagccaggctggtctt-gaactcctgacctcgtgatccacccaccttggcctcccaaagtgctgggattacaggtgtgagccaccacgcccggccAAATCTATCtt
i chlSab2.chr26             C 0 I 190
s manLeu1.NW_012102332v1       536013 167 -   3636681 ggtgcccgctaccacacccggctaatttttgtgtatttagtagagatagggtttcaccatgttagccaggcaggtctt-gaactcttgacctcgtgatccacccaccttggcctcccaaagtgctgggattacaggtgtgagccaccacgcctggccaaatctgtctt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       514294 167 -   4457520 ggtgcccgccaccacccccggctaatttttgtatatttagtagagatagggtttcactatgttagccaggctggtctt-gaactcctgacctcgtgatccacccaccttggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggccaaatctgtctt
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             377148 161 -   2682657 ggcgaggaccaccacacctggttaatgtttgtcgttttaatagagacaggatttcaccatattggccagtctggtctcaaaactcctgaccttgtgatccat-ccc------ctcccaaagtgctgggattacaggtatgagccactgtgcctggccAAAtccatctt
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       403262 161 -   2086007 ggtgtgcaccaccacacccggctgacttttatagttttaatagagacaaggtttcaccatattggccaggctggtctc-aaactcctgaccttgtgactcatcccc------ctcccaaagtgctaggattacaggtgtgagccactgtgcctggccaaatccatctt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       464189 161 +   3831555 ggtgtgcaccaccacacccggctaatttttgtagttttagtagagacagggtttcaccatattggccaggctggtctc-aaactcctgacctcgtgatccatccct------ctcccaaagtgctgggattacaggtgtgagccactgcgcctggccaaatctatctt
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             486864  33 +   3845361 GGCATCTGCCGTCAC------------------------------------------------------------CGC-ACACTTTCAGCCTCC--------------------------------------------------------------------------
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56157051   1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e dasNov3.JH562051             446435 291 +    563711 I
e canFam3.chr3               60062698  12 -  91889043 I
e panTro5.chr15               9611979 100 +  83230942 I
e calJac3.chr6              154544228 2540 - 158406734 I

a score=4638.000000
s hg38.chr15_KI270851v1_alt    215456 1 +    263054 t
s panPan2.chr15              74135844 1 -  99763055 t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       180230 1 -    281578 t
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71042858 1 + 121039945 t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164351149 1 - 169600520 t
i rheMac8.chr7              C 0 I 315
s macFas5.chr7              165672444 1 - 171882078 t
i macFas5.chr7              C 0 I 315
s macNem1.NW_012011934v1       525540 1 +   2379783 t
i macNem1.NW_012011934v1    C 0 I 313
s cerAty1.NW_012001462v1       483743 1 +   4116138 t
i cerAty1.NW_012001462v1    C 0 I 325
s manLeu1.NW_012102332v1       536180 1 -   3636681 t
i manLeu1.NW_012102332v1    C 0 I 315
s colAng1.NW_012115278v1       514461 1 -   4457520 t
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             377309 1 -   2682657 g
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       403423 1 -   2086007 t
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       464350 1 +   3831555 t
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56157051 1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e dasNov3.JH562051             446435 291 +    563711 I
e canFam3.chr3               60062698 12 -  91889043 I
e otoGar3.GL873689             486897 0 +   3845361 C
e panTro5.chr15               9611979 100 +  83230942 I
e chlSab2.chr26              53914669 190 +  58131712 I
e calJac3.chr6              154544228 2540 - 158406734 I

a score=69002.000000
s hg38.chr15_KI270851v1_alt    215457 10 +    263054 tgctgtacat
s panPan2.chr15              74135845 10 -  99763055 tactgtacat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       180231 10 -    281578 tgctgtacat
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71042859 10 + 121039945 tactgtacat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164351465 10 - 169600520 tactatacat
i rheMac8.chr7              I 315 C 0
s macFas5.chr7              165672760 10 - 171882078 tactatacat
i macFas5.chr7              I 315 C 0
s macNem1.NW_012011934v1       525854 10 +   2379783 tactatacat
i macNem1.NW_012011934v1    I 313 C 0
s cerAty1.NW_012001462v1       484069 10 +   4116138 tactatacat
i cerAty1.NW_012001462v1    I 325 C 0
s chlSab2.chr26              53914859 10 +  58131712 TACTATACAT
i chlSab2.chr26             I 190 C 0
s manLeu1.NW_012102332v1       536496 10 -   3636681 tactatacat
i manLeu1.NW_012102332v1    I 315 C 0
s colAng1.NW_012115278v1       514462 10 -   4457520 tactatacat
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             377310 10 -   2682657 tactggacat
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       403424 10 -   2086007 tactggacat
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       464351 10 +   3831555 tactggacat
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e dasNov3.JH562051             446435 291 +    563711 I
e canFam3.chr3               60062698 12 -  91889043 I
e otoGar3.GL873689             486897  0 +   3845361 C
e panTro5.chr15               9611979 100 +  83230942 I
e calJac3.chr6              154544228 2540 - 158406734 I

a score=28665.000000
s hg38.chr15_KI270851v1_alt    215467 3 +    263054 ttt
s panPan2.chr15              74135855 3 -  99763055 ttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       180241 3 -    281578 ttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71042869 3 + 121039945 ttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164351475 3 - 169600520 ttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165672770 3 - 171882078 ttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       525864 3 +   2379783 ttt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       484079 3 +   4116138 ttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53914869 3 +  58131712 TTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       536506 3 -   3636681 ttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       514472 3 -   4457520 ttt
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             377320 3 -   2682657 ttt
i saiBol1.JH378292          C 0 I 1
s cebCap1.NW_016107707v1       403434 3 -   2086007 ttt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       464361 3 +   3831555 ttt
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60062710 3 -  91889043 ttt
i canFam3.chr3              I 12 C 0
e mm10.chr7                  56157051 1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e dasNov3.JH562051             446435 291 +    563711 I
e otoGar3.GL873689             486897 0 +   3845361 C
e panTro5.chr15               9611979 100 +  83230942 I
e calJac3.chr6              154544228 2540 - 158406734 I

a score=3577625.000000
s hg38.chr15_KI270851v1_alt    215470 415 +    263054 aaaacatatttctgatagttatgttgaatttcttgtttgctaattctaacatct-gcccacctgttggtctgctgctctttgcag--tttttttc------ccttgattat---------------------agtcagttattggttgttgtccttcacata--tgagaa-tttttatttcattctggattctttggacgttacattgtattggctctgggt---tct----gcctc---ct--ctggagaatggggagttttcttctcacaggcagttcagtacctggcagtcctccttgatcctgaggtggcttggtgccaggctttc--taatga-ttttttatt-------tgccctta-gccctggttgtggatccttAATTCTCAAGGATTTAGAATC-TCTTCT-GGGCGTCACTGGAAGCCTTGACATTCT---CCTCCCCACCTCCAGTTGGTTGAGCTTGAGCCTC
s panPan2.chr15              74135858 415 -  99763055 aaaacatatttctgatagttatgttgaatttct-gtttgctaattctaacgtcttgcccacctgttggtctgctgctctttgcag--tttttatt------ccttgattat---------------------agtcagttattggttgttgtccttcacata--tgagaa-tttttatttcattctggattctttggacgttacattgtattggctctgggt---tct----gccgc---ct--ctggagaatggggagttttcttCTCACAGGCAGTTCAGTACCTGGCAGTCCTCCTTGATCCTGAGGTGGCTCGGTGCCAGGCTTTC--TAATGA-TTTTGTATT-------TGCCCTTA-GCCCTGGTTGTGGATCCTTAATTCTCAAGGATTTAGAATC-TCTTCT-GGGCGTCACTGGAAGCCTTGACATTCT---CCTCCCCACCTCTAGTTGGTTGAGCTTGAGCCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       180244 415 -    281578 aaaacatatttctgatagttatgttgaatttcttgtttgttaattctaacgtct-gcccacctgttgatctgctgctctttgcag--tttttatt------ccttgattat---------------------agtcacttattggttgttgtccttcacatatgtgagaa-ttcttatttcattctggattctttcgacgttacattgtattggctctgggt---tct----gcctc---ct--ctggagaaACGGGAGTTTTCTTCTCACA-GCAGTTCAGTACCTGGCAGTCCTCCTTGATCCTGAGGTGGCTTGGTGCCAGGCTTTC--TAATGA-TTTTTTATT-------TGCCCTTA-GCCCTGGTTGTGGATCCTT-ATTCTCAAGGATTTAGAATC-TCTTCT-GGGTGTCACTGGAAGCCTTGACATTCT---CCTCCCCACCTCTAGTTGGTTGAGCTTGAGCCTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71042872 418 + 121039945 aaaacatatttctgatagttatgttgaatttcttgtttgctaattctaacgtct-gcccacctgttggtgtgctgctctttgcag--tttttttt------ccttgattat---------------------agtcagttattgtttgttgtccttcacatatgtgagaa-tttttatttcattctggattctttggacgttatattgtattggctctgggt---tct----gcctt---ct--ctggagaacggggagttttcttCCCACAGGCAGTTCAGTACCTGACAGTCCTCCTTGATCCTGAGGTGGCTTGGTGCCAGGCTTTC--TAATGATTTTTTTATT-------TGCCCGTA-GCCCTGGTTGTGGATCCTTAATTCTCAAGGATTTAGAATC-TCTTCT-GAGCGTCTCTGGAAGCCTTGACATTCT---CCTGTTCACCTCTAGTTGATTGAGCTTGAGCCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164351478 410 - 169600520 aaaatgta----tgatagttatgttgaatttcttgtttgctaattctaatgtct-gcccacc-gttggtgtgctgctctttgcag--tttttttttttt--ccttgattat---------------------agtcagtttttggtggtggttcttcacatatgtgagaa-ttttgatttcattctggactctttggacattacattgtattgactctgagt---t-------cctc---ct--ctggagaacggggagttttcttCTCATAGGCAGTTCAGTACCTGGCA---CTCCTTGATCCTGAGGTGGCTTGGTGCTAGGGTTTC--TGATAA-TTTTTTATA-------TGCCCTTA-GCCCTGGTTGTGAATCCTTAATTCTCAAGGATTTAGAATC-TCTTCT-GGGCTTCACTGGAAGCTCTGACATTCT---CCTCCCTACCTCTAGTTGGTTGAGCTTGAGCCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165672773 411 - 171882078 aaaacata----tgatagttatgttgaatttcttgtttgctaattctaatgtct-gcccacctgttggtgtgctgctctttgcag--tttttttttttt--ccttgattat---------------------agtcagtttttggtggtggttcttcacatatgtgagaa-ttttgatttcattctggactctttggacattacattgtattgactctgagt---t-------cctc---ct--ctggagaacggggagttttcttCTCATAGGCAGTTCAGTACCTGGCA---CTCCTTGATCCTGAGGTGGCTTGGTGCTAGGGTTTC--TGATAA-TTTTTTATA-------TGCCCTTA-GCCCTGGTTGTGAATCCTTAATTCTCAAGGATTTAGAATC-TCTTCT-GGGCTTCACTGGAAGCTCTGACATTCT---CCTCCCTACCTCTAGTTGGTTGAGCTTGAGCCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       525867 410 +   2379783 aaaacata----tgatagttatgttgaatttcttgtttgctaattctaatgtct-gcccaccagttggtgtgctgctctttgcag---ttttttttttt--ccttgattat---------------------agtcagtttttggtggtggttcttcacatatgtgagaa-ttttgatttcattctggactctttggacattacattgtattgactctgagt---t-------cctc---ct--ctggagaacggggagttttcttctcataggcagttcagtacctggca---ctccttgatcctgaggtggcttggtgctagggtttc--tgataa-ttttttata-------tgccctta-gccctggttgtgaatccttaattctcaaggatttagaatc-tcttct-gggcttcactggaagctCTGACATTCT---CCTCCCTACCTCTAGTTGGTTGAGCTTGAGCCTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       484082 413 +   4116138 aaaacata----tgatagttatgttgaatttctggtttgctaattctaatgtct-gcccacctgttggtgtgctgctctttgcagtttttttttttttt--ccttgattat---------------------agtcagtttttggtggtggttctttacatatgtgagaa-ttttgatttcattctggactctttggatattacattgtattgactctgagt---t-------cctc---ct--ctggagaacggggagttttcttCTCATAGGCAGTTCAGTACCTGGCA---CTCCTTGATCCTGAGGTGGCTTGGTGCTAGGGTTTC--TGATAA-TTTTTTATA-------TGCCCTTA-GCCCTGGTTGTGAATCCTTAATTCTCAAGGATTTAGAATC-TCTTCT-GGGCTTCACTGGAAGCTCTGACATTCT---CCTCCCTACCTCTAGTTGGTTGAGCTTGAGCCTC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53914872 413 +  58131712 AAAACAta----taatagttatgttgaatttcttgtttgctaattctaatgtct-gcccacctgttggtctgctgctctttgcag--tttttttttttttcccttggttat---------------------agtcagtttttggtggtggttcttcacatatgtgagaa-ttttgatttcattctggagtctttggacattacattgtattgactctgagt---t-------cctc---ct--ctggagaacggggagttttcttCTCATAGGCAGTTCAGTACCTGGCA---CTCCTTGATCCTGAGGTGGCTTGGTGCTAGGGTTTC--TGATAA-TTTTTTATA-------TGCCCTTA-GCCCTGGTTGTGAATCCTTAATTCTCAAGGATTTAGAATC-TCTTCT-GGGCTTCACTGGAAGCTCTGACATTCT---CCTCCCTACCTCTAGTTGGTTGAGCTTGAGCCTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       536509 409 -   3636681 aaaacata----tgatagttatgttgaatttcttgcttgctaattctaatgtct-gcccacctgttggtgtgctgctctttgcag--tttttttttt----ccttgattat---------------------agtcagtttttggtggtggttcttcacatatgtgagaa-ttttgatttcattctggactctttggacattacattgtattgactctgagt---t-------cctc---ct--ctggagaacggggagttttcttCTCATAGGCAGTTCAGTACCTGGCA---CTCCTTGATCCTGAGGTGGCTTGGTGCTAGGGTTTG--TGATAA-TTTTTTATA-------TGCCCTTA-GCCCTGGTTGTGAATCCTTAATTCTCAAGGATTTAGAATC-TCTTCT-GGGCTTCACTGGAAGCTCTGACATTCT---CCTCCCTACCTCTAGTTGGTTGAGCTTGAGCCTC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       514475 412 -   4457520 aaaacata----tgatagttatgttgaatttcttgtttgctaattctaatgtct-gcccacctgttggtctgctgctcttcgcag--tttttttttt----ccttgattat---------------------agtcagtttttggtggtggttcttcacatatgtgagaa-tttttatttcattctggattctttggacattacattgtattggctctgggttcct-------cctc---ct--ctggagaatggggagttttcttCTCATAGGCAGCTCAGTACCTGGCA---CTCCTTGATCCTGAGGTGGCTTGGTGCTAGGGTTTC--TGATAA-TTTTTTATA-------TGCCCTTA-GCCGTGGTTGTGAATCCTTAATTCTCAAGGATTTAGAATC-TCTTCT-GGGCTTCACTGGAAGCTCTGACATTCT---CCTCCCTACCTCTAGTTGGTTGAGCTTGAGCCTC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154546768 414 - 158406734 aaaaCATA--TCtgatagttatgttggatttcttgtttgctgattctaatgtct-ggt--cctgttggtctgctgctctttgcggtttttttttc------ccctgattat---------------------agtcagttattggtggtgattcttcacatatctgagaa-tgtttatttcattctggattctttggatgttatattgtattggctctgggt---tct----gcctccttct--ctggagaatggggaattttcttCTCACAGGCAGTTCAGTACTTGGCA---GTCCTCCATCCTGAGGTGGCTTGGTGCTAGGCTTTC--TAATGA-TGTTCTATG-------TTGCCCTT-ACCCTGGTTCTGGATCCTTAATTCT-GGGGATTTGGAATC-TCTTCT-GGGTTTCGCTGGAAGCCTTGACATTTT---CCTTCCCACCCCTAGTTGGTTGAGCTTGATCCTC
i calJac3.chr6              I 2540 C 0
s saiBol1.JH378292             377324 414 -   2682657 aaaacatatttctgatagttatgttgcatttcttgtttgctaattctaatgtct-agt--cctgttggtctgctgctctttgcag--tttttttc------ccttgattac---------------------agccagttattggttgctgttcttcacatatctgagaa-tgtttatttcattctggattctttggatgttacactgtattgaccctgggt---tct----gcctccttct--ctggagaatggggagttttcttctcacaggcagttcaggacttggca---gtcCTCCATCCTGAGGCGGCTTGGTGCTAGGCTTTC--TAATGA-TGTTTTATG-------CTGCCCTT-ACCCTGGTTCTGGATCTTTAATTCT-GGGGATTTAGAATC-TCTTCT-GGGTGTCACTGGAAGCCTCGACATTTT---CCTTCCCACCCGTAGTCGGTTGAGCTTGAACCTC
i saiBol1.JH378292          I 1 C 0
s cebCap1.NW_016107707v1       403437 413 -   2086007 taaacatacttctgatagttatgttggatttcttgtttgccaattccaatgtcc-ggt--cctgttggtctgctgctctttgcag---tttttta------ccttgatgat---------------------agtcagttactggtggttgttcttcacatatctgagaa-tgttgatttcgttctggattctttggatgttacattgtgttggccctgggt---tct----gcctccttct--ctggagagtggggagttttcttctcacaggcagttcaggacccggCA---GTCCTCCGTCCTGAGGTGGCTTGGTGCTAGGCTTTC--TAATGA-TGTTTTATG-------CTGCCCTT-ACCCTGGCTCTGGATCCTTAATTCT-GGGGATTTAGAATC-TCTTCT-GTGTTTCACTGGAAGCCTCGACATTTT---CCTTCCCACCCCTAGTTGGTTGAGCTTGGGTCTC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       464364 411 +   3831555 aaaacatatttctgacagttatgttgaatttcttgtttgctaattctaatgtct-ggc--cctgttggtctgctgctctttgcag--tttttttc------ccttgattat---------------------agtcagttatttgtggtggttcttaacatatctgagaa-tgtttatttcgttctggattctttggatgttacattgtattggctctgggt---tct----gcctc---ct--ctggagaatggggagttttcttCTCACAGGCAGTTCAGTACCTGGCA---GTCCTCCATCCTGAGGCGGCTTGGTGCTAGGTTTTC--TAATGA-TGTTTTATG-------TTGCCCTT-ATCCTGGTTCTGGATCCTTAATTCT-GGGGATTTAGAATC-TCTTCT-GGGTCTCACTGGAAGCCTCAGCATTTT---CCTTCCCACCCCTAGTTGGTTGAGCTTGAGCCTC
i aotNan1.NW_018503298v1    C 0 I 323
s otoGar3.GL873689             486897 380 +   3845361 ---------TTCTGGTA------------TTCCTGTCTGCTGTTTCTGATGCCT-CCC----------CCTGCCGGTCTCAGCAG--TTTCCT--------CCTGACTAAC---------------------AGTCAGCTGTTGGtccttgctcttcgcatatctaggaattttttattgtactctggatgttttggaccttacatcgtattgggtctgggt---t--------------ctgactggagagtgtgg--tttccttcccacaggcag-tcaGTGCCTGACA---GGCCTCGGTCCCGAGGAGGCTTGGTGCTAGGCTTT---TAATGA-TGGTTTATTTTGTTTCTGTCCTTC-ATTCTAGTTCCAGGTCCTTAATTCTAAGGAATTTAAAATCAACTTTG-GGGTTTCAGTGGAGGCTTCAACACCCT---TC-CCCAACACATACTCAGGTGGACTTGAATCTC
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60062713 448 -  91889043 acaacatattcctgatagttatattaaatttcttgtttggtaattttaacacctgggccagctgtcagtctgctactatttgggt--gttttttt------ttctgattataatcagttattgaaaaaaaaaaatcagttattggttttgcttcttcacatatct-acag-ttgttaatatattttaaatgttttagatactacattgtattggcgctgtgt---cctgtcagcatt---tt--ctggagaatgtagcattttATTCTCATAGATAGTTCATTATCTGACCTTTCTCCCCAATCCTTTGGACACTTGGCTCTAGAATTTTTGTGGTGG-TTTTTGTTT-------TGCACTTAGGCCTTGGTTTCTTTTTTCTAATTCCTCAGGAGTTAGAATC-TTTTCCAAGGGTTCAGTGGAAACCTCTATACTTTGACCAATTCTATCTA-ACTTGGTTGGACTGGGGCCTC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56157051   1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e dasNov3.JH562051             446435 291 +    563711 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=160311.000000
s hg38.chr15_KI270851v1_alt    215885 19 +    263054 -AGATGCTGTCCTGGCCCTG
s panPan2.chr15              74136273 19 -  99763055 -AGATGCTGTCCTGGCCCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       180659 19 -    281578 -AGATGCTGTCCTGGCCCTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71043290 19 + 121039945 -AGATGCTGTCCTGGCCCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164351888 19 - 169600520 -AGGTGCTGTCCTGGCCCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165673184 19 - 171882078 -AGGTGCTGTCCTGGCCCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       526277 19 +   2379783 -AGGTGCTGTCCTGGCCCTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       484495 19 +   4116138 -AGGTGCTGTCCTGGCCCTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53915285 19 +  58131712 -AGGTGCTGTCCTGGCCCTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       536918 19 -   3636681 -AGGTGCTGTCCTGGCCCTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       514887 19 -   4457520 -AGGTGCTGTCCTGGCCCTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154547182 19 - 158406734 -AGTTGCTGTGCTGTCCCTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             377738 19 -   2682657 -AGTTGCTGTGCTGGCCCTG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       403850 19 -   2086007 -AGTTGGTGTGCTGGCCCTG
i cebCap1.NW_016107707v1    C 0 I 708
s otoGar3.GL873689             487277 19 +   3845361 -AAATACTAGCCCGGCCCTG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60063161 20 -  91889043 AGACTGTCTCCCTAACACTG
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e dasNov3.JH562051             446435 291 +    563711 I
e aotNan1.NW_018503298v1       464775 323 +   3831555 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=183777.000000
s hg38.chr15_KI270851v1_alt    215904 17 +    263054 GGCAGCTGGGGAGCCCC
s panPan2.chr15              74136292 17 -  99763055 GGCAGCTGGGGAGCCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       180678 17 -    281578 GGCAGCTGGGGAGCCCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71043309 17 + 121039945 GGCAGCTGGGGAGCCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164351907 17 - 169600520 GGCAGCTGGGGAGCCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165673203 17 - 171882078 GGCAGCTGGGGAGCCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       526296 17 +   2379783 GGCAGCTGGGGAGCCCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       484514 17 +   4116138 GGCAGCTGGGGAGCCCC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53915304 17 +  58131712 GGCAGCTGGGGAGCCCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       536937 17 -   3636681 GGCAGCCGGGGAGCCCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       514906 17 -   4457520 GGCAGCTGGGGAGCCCC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154547201 17 - 158406734 GGCAGCTGGGGAGCCCC
i calJac3.chr6              C 0 I 555
s saiBol1.JH378292             377757 17 -   2682657 GGCAGCTGGGGAGCCCC
i saiBol1.JH378292          C 0 I 203
s cebCap1.NW_016107707v1       404577 16 -   2086007 GGCAGCTCGGGAGCCC-
i cebCap1.NW_016107707v1    I 708 C 0
s aotNan1.NW_018503298v1       465098 16 +   3831555 GGCAGCTGGGGAGCCC-
i aotNan1.NW_018503298v1    I 323 C 0
s otoGar3.GL873689             487296 17 +   3845361 GGCAGCTGCAGAGATCC
i otoGar3.GL873689          C 0 I 11
s canFam3.chr3               60063181 17 -  91889043 GGCAGCTATAGAATCCC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e dasNov3.JH562051             446435 291 +    563711 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=937817.000000
s hg38.chr15_KI270851v1_alt    215921 133 +    263054 TGCAG----CCTTCCAGC-------GGTCCCTTTGTGCCGAG-CGCAGGCTCTTCAGTG----------GTGCTTCAGTTTAGATTCAGCTGT-AGATTTGCGGGTAGTCCGTCCGCATATTTCGTGGTTTTCCCTCTGTGGTTTCTTTCTCAGGC
s panPan2.chr15              74136309 132 -  99763055 TGCAG----CCTTCCAGC-------AGTCC-TTTGTGCCGAG-CGCAGGCTCTTCAGTG----------GTGCTTCAGTTTAGATTCAGCTGT-AGATTTGCGGGTAGTCCGTCCGCACATTTCGTGGATTTCCCTCTGTGGTTTCTTTCTCAGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       180695 133 -    281578 TGCAG----CCTTCCAGC-------GGTCCCTTTGTGCCGAG-CGCAGGCTCTTCAGTG----------GTGCTTCAGTTTAGATTCAGCTGT-AGATTTGCGGGTAGTCCGTCCTCACATTTTGTGGTTTTCCCTCTGTGGTTTCTTTCTCAGGC
i gorGor5.CYUI01000141v1    C 0 I 124
s nomLeu3.chr6               71043326 132 + 121039945 TGCAG----CCTTCCAGC-------GGTCCCTTTGTGCCCAG-CCCAGGCTCTTCAGAG----------GTGCTTCAGTTTAGATTCAGCTGT-AGATTT-CGGGTAGTCCGTCTACACATTTCATGGTTTTCCCTCTGTGGTTTCTTTTTCAGGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164351924 132 - 169600520 TGCAA----CCTTCCAGC-------AGTCCCTTTGTGCGGAG-C-CAGGCTCTTCAGAG----------GTGCTTCAGCTGAGATTCAGCTGT-AGATAAGTGGGTAGTTCGTCCGAACATTTTGTGGTTTTCCCTCTGCGGTTTCTTTCTCAGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165673220 132 - 171882078 TGCAA----CCTTCCAGC-------AGTCCCTTTGTGCGGAG-C-CAGGCTCTTCAGAG----------GTGCTTCAGCTGAGATTCAGCTGT-AGATAAGTGGGTAGTTCGTCCGAACATTTTGTGGTTTTCCCTCTGCGGTTTCTTTCTCAGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       526313 132 +   2379783 TGCAA----CCTTCCAGC-------AGTCCCTTTGTGTGGAG-C-CAGGCTCTTCAGAG----------GTGCTTCAGCTGAGATTCAGCTGT-AGATAAGTGGGTAGTTCGTCCGAACATTTTGTGGTTTTCCCTCTGCGGTTTCTTTCTCAGGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       484531 132 +   4116138 TGCAA----CCTTCCAGC-------AGTCCCTTTGTGCGGAG-C-CAGGCTCTTCAGAG----------GTGCTTCAGCTGAGATTCAGCTGT-AGATAAGTGGGTAGTTCGTCCGAACATTTTGTGGTTTTCCCTCTGCGGTTTCTTTCTCAGGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53915321 132 +  58131712 TGCAA----CCTTCCAGC-------AGTCCCTTTGTGCAGAG-C-CAGGCTCTTCAGAG----------GTGCTTCAGTTTAGATTCAGCTGT-AGATAAGTGGGTAGTTCGTCGGAACATTTTGTGGTTTTCCCTCTGCGGTTTCTTTCTCAGGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       536954 132 -   3636681 TGCAA----CCTTCCAGC-------AGTCCCTTTGTGCGGAG-C-CAGGCTCTTCAGAG----------GTGCTTCAGCTGAGATTCAGCTGT-AGATAAGTGGGTAGTTCGTCCGAACATTTTGTGGTTTTCCCTCTGCGGTTTCTTTCTCAGGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       514923 133 -   4457520 TGCAA----CCTTCCAGC-------AGTCGCTTTGTGCCGAGCC-CAGGCTCTTCAGAG----------GTGCTTCGGTTTAGATTCAGCTGT-AGATAAGCGGGTAGTTCCTCCCAACATTTTGTGGTTTTCCCTCTGCGGTTTCTTTCTCAGGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154547773 124 - 158406734 TGCAG----CCTTCCAAC-------GGTTTCTTTGTGCCCAG-CCCAGGCTCTTCACTG----------GTGCTTCAGTTTAGATTCAGTTATTAGATTTGTGGTTAGTCTGTCTGCACA---------TTTCCCTTTGTGG-TTCTTTCTCAGGG
i calJac3.chr6              I 555 C 0
s saiBol1.JH378292             377977 124 -   2682657 TGCAG----CCTTCCAGC-------GGTCCCTCTGTGCCCAG-CCCAGGCTCTTGACCA----------GCGCTTCAGTTTAGGTTCAGTCATGAGATTTGCAGTTAGTCTGTCCGCACA---------TTTCCCTCTGTGG-TTCTTTCTCAGGG
i saiBol1.JH378292          I 203 C 0
s cebCap1.NW_016107707v1       404593 124 -   2086007 TGCAG----CCTTCCAGC-------GGTCCCTCGGTGCCCAG-CCCAGGCTCTTGACCA----------GCGCTTCAGTTTAGATTCAGTCATTAGATTTGCAGTTAGTCTATCTGCACA---------CTTCCCTCTGTGG-TTCTTTCTCAGGG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       465114 122 +   3831555 TGCAG----CCTTCCAGC-------GGT-CCTTTGTGCCCAG-CGCAGGCTCTTCACCG----------GCGCTTCAGTTTAGATTCAGCCATTAGATTTGCAGTTAGTCTGTCCGCACA---------TTTCTCTCTGTGG-TTCTTT-TCAGGG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             487324 150 +   3845361 TGCAGAGATCCCTCTGGCCTTCTGTAATCCCTTTGAGAGGAG-C-CAGGCTCTTCAGGGTCTCACACATGTGCTCTGTTTTGGAATCAGCC---AGATTTGAGGGTAATGTGTATACATGATTGTGGTCTTTCCCTCTGTGTTTTCTCCATCGGG-
i otoGar3.GL873689          I 11 C 0
s canFam3.chr3               60063198 107 -  91889043 TCTAG----CCTTCCAGC-------AATTCCTT------ACG-C-TTGGTTCTTCAGGGTCTCACAA--ATGCTCAGTTTTGGAATAAGTCAA-TAATTTG-AGATAATCCGTGTGCACATTTTATGATT--------------------------
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56157051   1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e dasNov3.JH562051             446435 291 +    563711 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=616033.000000
s hg38.chr15_KI270851v1_alt    216054 77 +    263054 GGGCTTTCCCTCACATTCTGGTTGCTCTGGCAGGCCGGGACCCCA----GCCCCTGCAGTGCAGGAA-GGTGT-GCCGTCTGT
s panPan2.chr15              74136441 77 -  99763055 GGCCTTTCCCTCGCATTCTGGTTGCTCTGGCAGGCCCAGACCCCA----GGCCCTGCAGTGCAGGAA-GGTGC-GCCGTCTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       180952 77 -    281578 GGGCTTTCCCTCGCATTCTGGTTGCTCTGGCAGGCCCGGACCCCA----GCCCCTGCAGTGCAGGAA-GGTGC-GCCGTCTGT
i gorGor5.CYUI01000141v1    I 124 C 0
s nomLeu3.chr6               71043458 77 + 121039945 GGGCTTTCCCTCGCATTCTGGTTGCTCTGGCAGGCCGGGAACGCA----GCCCCTGCAGTGCAGGAA-GGTGC-ACCGTCTGT
i nomLeu3.chr6              C 0 I 297
s rheMac8.chr7              164352056 76 - 169600520 AGGCTTTCCCTCGCATTCTGGTTGCTCTGGCAGG-CGGGACCCCA----GCCCCTGCAGTGCAGGAA-GGTGC-ACTGTCTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165673352 76 - 171882078 AGGCTTTCCCTCGCATTCTGGTTGCTCTGGCAGG-CGGGACCCCA----GCCCCTGCAGTGCAGGAA-GGTGC-ACTGTCTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       526445 76 +   2379783 AGGCTTTCCCTCGCATTCTGGTTGCTCTGGCAGG-CGGGACCCCA----GCCCCTGCAGTGCAGGAA-GGTGC-ACTGTCTGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       484663 76 +   4116138 AGGCTTTCCCTCGCATTCTGGTTGCTCTGGCAGG-CGGGACCCCA----GCCCCTGCAGTGCAGGAA-GGTGC-ACTGTCTGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53915453 75 +  58131712 AGGCTTTCCCTCGCATTCTGGTTGCTCTGGCAGG-CAGGACCCCA----GCCCC-GAAGTGCAGGAA-GGTGC-ACTGTCTGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       537086 76 -   3636681 AGGCTTTCCCTTGCATTCTGGTTGCTCTGGCAGG-CGGGACCCCA----GCCCCTGCAGTGCAGGAA-GGTGC-ACTGTCTGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       515056 76 -   4457520 AGGCTTTCCCTCGCATTCTGGTTGCTCTGGCAGG-CGGGACCCCA----GCCCCTGCAGTGCAGGAA-GGGGC-ACTCTCTGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154547897 78 - 158406734 TCCCTTTTCCTCGAATTCCAGTTGCTCTGGCAGGTTCGAATCCCA----GCCCCTGCAGTGCAGGAA-CGTGCTGCTGTCTGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             378101 78 -   2682657 TCCCTTTCCCTCGCGTTCTGGTTGCTCTGGCAGGCCCGGATCCCA----GCCCCTGCAGTGCAGGAA-CGTGCTGTTGTCTGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       404717 77 -   2086007 TCCCTTTCCCTCGCATTCTGGTTGCTCTGGCAGGCT-GGATCCTA----GCCCCTGCAGTGCAGGAA-CGTGCTGCTGTCTGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       465236 78 +   3831555 TCCCTTTCCCTTGCATTCTGGTTGCTCTGGCAGGCCCGGATCCCA----GCCCCTGCAGTGCGGGAA-CGTGCTGCTGTCTGT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             487474 83 +   3845361 GTCACTCCCCTCACTCTCTGACTGTTCATGTAGCTCCAAAGCTCACTCTGCACCTGCAGTTCAGGAACCCTGCCGCTGTCTGT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60063305 52 -  91889043 ----CCTCCTTCAC-TTCTAATTGCTCTGGCAAGACTGAATTCCA----GCCTCTG-ACTGT---------------------
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e dasNov3.JH562051             446435 291 +    563711 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=476276.000000
s hg38.chr15_KI270851v1_alt    216131 62 +    263054 -GGTTAAATGCGCGTCTTACCTGCAGGCTTCTCG--GGGTCAGGGGTTGTGCTTGTTT-----------------TATTGCT
s panPan2.chr15              74136518 62 -  99763055 -GGTTAAATGCGCGTCTTACCTGCAGGCTTCTCA--GGGTCACGGGTTGTACTCGTTT-----------------TATTGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       181029 62 -    281578 -GGCTAAATGCGCGTCTTACCTGCAGGCTTTTCA--GGGTCAGGGGTTGTACTCGTTT-----------------TATTGCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71043832 62 + 121039945 -GGTTTAATGTGCGTCTTGCCTGCAGGCTTCTCG--GGGTCAGGGGTTGTGCTCGTTT-----------------TAttgct
i nomLeu3.chr6              I 297 C 0
s rheMac8.chr7              164352132 62 - 169600520 -GGTTAAACGTGCATCTTGCCTGCAggcttctct--gcgtcacgggttgtgctcattt-----------------tattgct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165673428 62 - 171882078 -GGTTAAACGTGCATCTTGCCTGCAGGCTTCTCT--GCGTCACGGGTTGTGCTCATTT-----------------TAttgct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       526521 62 +   2379783 -GGTTAAACGTGCATCTTGCCTGCAggcttctct--gcgtcacgggttgtgctcattt-----------------cattgct
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       484739 62 +   4116138 -GGTTAAACGTGCATCTTGCCTGCAggcttctct--gcgtcacgggttgtgctcattt-----------------tattgct
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53915528 62 +  58131712 -GGTTAAATGTGCATCTTGCCTGCAGGCTTCTCT--GCTTCACGGGTTGTGCTCGTTT-----------------TAttgct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       537162 62 -   3636681 -GGTTAAACGTGCATCTTGCCTGCAggcttccct--gcgtcacgggttgtgctcattt-----------------tattgct
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       515132 62 -   4457520 -GGTTAAATGTGCATCTTGCCTGCGGGCTTCTCT--GGGTCAGGGCTTGTGCTCGTTT-----------------TAttttt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154547975 62 - 158406734 -GGTTGAATGTGCACCTTGCCTATCAGCCTCCCT--GGGCCAGGGGTTGTGCTCGTTT-----------------TAttgct
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             378179 62 -   2682657 -GGTTAAATGTGCACCTGGCCTGTCGGCTTCCCT--GGGCCAGGGGTTGTGCTCGTTT-----------------Tattgct
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       404794 49 -   2086007 -GGTTAAATG-------------TCAGCTTCCCT--GGGCCAGGGCTTGTGCTCGTTT-----------------TAttgct
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       465314 62 +   3831555 -GGTTAAATGTGCACCTTGCCTGTCAGCTTCCCT--GGGCCAGGGGTTGTGCTTGTTT-----------------TAttgct
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             487557 48 +   3845361 -GGTGA-------------CCTGCACATCtccct--gcgtc-caggttgcacccattc-----------------cagttct
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60063357 82 -  91889043 AGTCTAATAACACTGCTTGCTTGCTGGCTTCCCCCATGGTCAAGGGTTATACCTATTCCCCCATGGTCAAAGTTATACGGCC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e proCoq1.NW_012148396v1     13533271 2043 +  16154928 I
e dasNov3.JH562051             446435 291 +    563711 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=475184.000000
s hg38.chr15_KI270851v1_alt    216193 44 +    263054 GATTGCGTCAGCTGTtctccagtgccctcaagcagttttaaaac
s panPan2.chr15              74136580 44 -  99763055 GATTGCGTCAGCTGTtctccagtgccctcaagcagttttaaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       181091 44 -    281578 GATTGCGTCAGCTGTtctccagtgccctcaagcagttataaaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71043894 44 + 121039945 gattgcttcagctgttctccagtgccctcaagcagttttaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164352194 44 - 169600520 gattgcttcagctattctccggtgccctcaagcagttttataga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165673490 44 - 171882078 gattgcttcagctattctccggtgccctcaagcagttttataga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       526583 44 +   2379783 gattgcttcagctattctccggtgccctcaagcagttttacaga
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       484801 44 +   4116138 gattgcttcagctattctccggtgccctcaagcagttttataga
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53915590 44 +  58131712 gattgcttcagctattctccagtgccctcaagcagttttaaaga
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       537224 44 -   3636681 gattgcttcagctattctccggtgccctcaagcagttttataga
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       515194 44 -   4457520 gactgcttcaactattctccagtgccctcaagcagttttaaaga
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154548037 44 - 158406734 gattgcttcattcgttctctagtgccctcaagcagttttaaaaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             378241 43 -   2682657 cgttgcttca-gcgttctctagtgccctcaagcagttttaaaaa
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       404843 44 -   2086007 gattgcttcagccgttatctagtgccctcaagcagttttaaaaa
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       465376 44 +   3831555 gattgcttcagccgttctctagtgccctcaagcagttttaaaaa
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13535314 44 +  16154928 gattgcttcagctgttctctagtgccctccagcagtttttaaaa
i proCoq1.NW_012148396v1    I 2043 C 0
s otoGar3.GL873689             487605 44 +   3845361 gattctttcagctattctccagcacctttaagcaatgtttaaaa
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60063439 43 -  91889043 -AAGGCtttggctgttctccaggaccttcaaacagtttttgaaa
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e dasNov3.JH562051             446435 291 +    563711 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=3392780.000000
s hg38.chr15_KI270851v1_alt    216237 315 +    263054 atattttatccagagttcatgattattatcagccaagggttagtccaatgcaccctaactccccattatcagaaccagaactctTGGCTCAATCTGGCTCTGAATTTT-AAACTTTTAGGATGAAACCTGTCACTTCCAAGTTACCCAGACTTCGCTGCAAAACCCTAGGCTT-TGATACTTCCTGAGCACCGGGGGGCTCCACAGTGTCCTCGGTTTCTTCC-TGATTCCTTCCTCACATGCTCCGTTTAACAAA-ATAGCAAG---TC--A---GTGCTATGAGAGCAGCTGGGGA----GGAGGACCAGGGA-------------------------------------------GTTGCAGACAGATCAG
s panPan2.chr15              74136624 314 -  99763055 atattttatccagagttcatgattattatcagccaaaggttagtccagtgcatcctaactctcaattatcagaaccagaactctTGGCGCAATCTGGCTCTGAATATT-AAACTTTTAGGATGAAACCTGTCACTTCCAAGTTACCCAGACTTCGCTGCAAAACCCTAGGCTT-TGATACTTCCTGAGCACCGGGGGGCTCCGCAGTGTCCTTGGTTTCTTCC-TGATTCCTTCCTCACATGCTCCGTTTAACAAA--TAGCAAG---TC--A---GTGCTATGAGAGCAGCTGGGGA----GGAGGACCAGGGA-------------------------------------------GTTACAGACAGATCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       181135 315 -    281578 atattttatccagagttcatgattattatcagccaaaggttagtccagtgcatcctaactctcaattatcagaaccagaCCTCTTGGCTCAATCTGGCTCTGAATTTT-AAACTTTTAGGATGAAACCTGTCACTTCCAAGTTACCCAGACTTCGCTGCAAAACCCTAGGCTT-TGATACTTCCTGAGCCCCGGGGGGCTCCGCAGTGTCCTCGGTTTCTTCC-TGATTCCTTCCTCACATGCTCCGTTTAACAAA-ATAGCAAG---TC--A---GTGCTATGAGAGCAGCTGGGGA----GGAGGACCAGGGA-------------------------------------------GTTGCAGACAGATCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71043938 314 + 121039945 atattttatccagagttcatgattattatcagccaagggttagtccaatgcaccctgactccccattatcagaaccagaactctTGGCTCAATCTAGCTCTGAATTTT-AAACTTTTAGGATGAAACCTGTCACTTCCAAGTTACCCAGACTTCGCTGTAAAACCCTA-GCTT-TGATACTTCCTGAGCGCTGGGGGGCTCCACAGTGTCCTTGGTTTCTTCC-TGATTCCTTCCTCACATGCTCAGTTTAACAAA-ATAGCAAG---TC--A---GCGCTATGAGAGCAGCTGGGGA----GGAGGACCAGGGA-------------------------------------------GTTGCAGATAGATGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164352238 313 - 169600520 atattttatccagagttcatgattattatcagccaagggttggtccagtgcaccctaactccccgttatcagaaccagaactctTGGCTCAATCTGGCTCTGAATTTT-AAACTTTTAGCATGAAAACTATCACTTCCAAGTTACCCAGACTTCACTGCAGAACCCTAGTCTT-TGATACTT-CTGAGCACTGGGGGATTCCACAGTGTCCTCGGTTTCTTCC-TGATTCCTTCCTCACATGGTCAGTTTAACAAA-ATAGCAAG---TC--A---GTGCTATGAGAGCAGCTCGGGA-----GGGGACTAGAGA-------------------------------------------GTTGCAGACAGATGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165673534 313 - 171882078 atattttatccagagttcatgattattatcagccaagggttggtccagtgcaccctaactccccgttatcagaaccagaactctTGGCTCAATCTGGCTCTGAATTTT-AAACTTTTAGCATGAAAACTATCACTTCCAAGTTACCCAGACTTCACTGCAGAACCCTAGTCTT-TGATACTT-CTGAGCACTGGGGGATTCCACAGTGTCCTCGGTTTCTTCC-TGATTCCTTCCTCACATGGTCAGTTTAACAAA-ATAGCAAG---TC--A---GTGCTATGAGAGCAGCTCGGGA-----GGGGACTAGAGA-------------------------------------------ATTGCAGACAGATGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       526627 313 +   2379783 atattttatccagagttcatgattattatcagccaagggttggtccagtgcaccctaactccccgttatcagaaccagaactctTGGCTCAATCTGGCTCTGAATTTT-AAACTTTTAGCATGAAAACTATCACTTCCAAGTTACCCAGACTTCACTGCAGAACCCTAGTCTT-TGATACTT-CTGAGCACTGGGGGATTCCACAGTGTCCTCGGTTTCTTCC-TGATTCCTTCCTCACATGGTCAGTTTAACAAA-ATAGCAAG---TC--A---GTGCTATGAGAGCAGCTCGGGA-----GGGGACTAGACA-------------------------------------------GTTGCAGACAGATGAG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       484845 314 +   4116138 atattttatccagagttcatgattattatcagccaagggttggtccagtgcaccctaactccccattatcagaaccagaactctTGGCTCAATCTGGCTCTGAATTTT-AAACTTTTAGCATGAAAACTATCACTTCCAAGTTACCCAGACTTCACTGCAGAACCCTAGTCTT-TGATACTT-CTGAGCACTGGGGGATTCCACAGTGTCCTCGGTTTCTTCG-TGATTCCTTCCTCACATGGTCAGTTTAACAAA-ATAGCAAG---TC--A---GTGCTATGAGAGCAGCTCGGGA----GGGGGACCAGAGA-------------------------------------------GTTGCAGACAGATGAG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53915634 312 +  58131712 atattttatccagagttcataattattatcagccaagggttagtccagtgcaccctaactccccattatcagaaccagaactctTGGCTCAATCTGGCTCTGAATTTT-AAAC--TTAGCACGAAAACTGTCACTTCCAAGTTACCCAGACTTCACTGCAGAACCCTAGTCTT-TGATACTT-CTGAGCACTGGGGGATTCCACAGTGTCCTCGGTTTCTTCC-TGACTCCTTCCTCACATGGTCAGTTTAACAAA-ATAGCAAG---TC--A---GTGCCATGAGAGCAGCTCGGGA----GGGGGACCAGAGA-------------------------------------------GTTGCAGACAGATCAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       537268 314 -   3636681 atattttatccagagttcatgattattatcagccaagggttggtccagtgcaccctaactccccattatcagaaccagaactctTGGCTCAATCTGGCTCTGAATTTT-AAGCTTTTAGCATGAAAACTATCACTTCCAAGTTACCCAGACTTCACTGCAGAACCCTAGTCTT-TGATACTT-CTGAGCACTGGGGGATTCCACAGTGTCCTCGGTTTCTTCC-TGATTCCTTCCTCACATGGTCAGTTTAACAAA-ATAGCAAG---TC--A---GTGCTATGAGAGCAGCTCGGGA----GGGGGACCAGAGA-------------------------------------------GTTGCAGACAGATGAG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       515238 361 -   4457520 atattttgtccagagttcatgattattatcagccaagggttagtccagtgcaccctaactccccattatcagaaccagaactctTGGCTCAATCTGGCTCTGAATTTT-AAACTTTTAGGATGAAAACTGTCACTTCCAAGTTACCCAGACTTCACTGCAGAACCCTAGGCTT-TGATACTT-CTGAGCACTGGGGGACTCCACAGTGTCCTTGGTTTCTTCC-TGATTCCTTCCTCACATGCTCAGTTTAACAAA-ATAGCACG---TC--A---GTGCCATGAGAGCAGCTCGGGAGGGAGGAGGACCAGAGATTGCAGACCGATCAGGGAAGTGCTGTCGGGAGCAGGACCAGAGATTGCAGACCGATCAG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154548081 296 - 158406734 atatttaatccagagtttatggttattatcaaccaaggcttagtccagCGCACCCTGACTCCCCTTTAT------------------CTTAATCTGGCTCTGAAGTTT-AAACTCTTAGGATGAAACCTGTCGCTTCCAAGTTACCCAGACTTCGCTGCAAACCCCTAGGCTT-TGATACTTCCTGAGCACTGGAGGACTCCACAGTGTCCTTGGTTTCTTCC-TGATTCCTTCCTCGCAAGCTCAGTTTAACAAA-ATAGCAAA---TC--A---GTGCTATGATAGCAGCTGGGGA----GGAGGGCCAGAGA-------------------------------------------G-TGCGGATAGATCAG
i calJac3.chr6              C 0 I 8
s saiBol1.JH378292             378284 314 -   2682657 atatgtaatccagagtttatatttattatcagccaagggttagtccgatgcaccctgactcccttttatcagaaccagTACTTTTGGCTTAATCTGGCTCTGAAGTTT-AAACTTTTAGGATGAAACCTGTCACTTCCAAGTTACCCAGACTTCGCTGCAAACCCCTAGGCTT-TGATACTTCCTGAGCACTGGGGGACTCTACAGTGTCCTTGGTTTCTTCC-TGATTCCTCCCTCAGAAGCTCAGTTTAACAAA-GTAGCAAG---TC--A---GTGCTGTGGCAGCAGCTGGGGA----GGAGGACCAGAGA-------------------------------------------G-TACAGGTAGATCAG
i saiBol1.JH378292          C 0 I 762
s cebCap1.NW_016107707v1       404887 314 -   2086007 atatttaatccagagtttatgtttattatcagccgagggttagtccaatgcaccctgactctcctttatcagaaccagCACTTTTGGCTTAATCTGGCTCTGAAGTTT-AAACTTTTAGGATGAAACCTGTCACTTCCAAGTTACCCAGACTTCGCTGCAAACCCCTAGGCTT-TGATACCTCCGGAGCACTGGAGGACTCCACAGTGTCCTTGGTTTCTTCC-TGATTCCTTCCTCGCAAGCTCAGTTTAACAAA-GTAGCAAG---TC--A---GTGCCGTGACAGCAGCTGGGGA----GGAGGACCAGAGA-------------------------------------------G-TGCAGCTGGATCAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       465420 314 +   3831555 atatttaatccagagtttatgtttattatcagccaagggttagtccagtGCACCCCGACTGCCCTTTATCAGAACTAGTACTTTTGGCTTAATCTGGCTCTGAAGTTT-AAACTTTTAGGATGAAATCTGTCACTTCCAAGTTACCGAGACTTCGCTGTAAACCCCTCGGCTT-TGATATTTCCTGAGCACTGGAGGACTCTACAGTGTCCTTGGTTTCTTCC-CGATTCCTTCCTCGCAAGCTCAGTTTAACAAA-ATAGCAAG---TC--A---GTGCTATGACAGCAGCTGGGGA----GGAGGACCAGAGA-------------------------------------------G-TGCAGATAGATCAG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13535358 318 +  16154928 atattttgcccagggttcataattattatcagcagaggattagtctactgt-gcctaactccttattaccagaaccagaactctTAGCTAAATCTGATTCTGAATTGT-AAACTTTTAGGGGGAAACCTGTCACTTTCATCTTACCCAGACTTCACTGTAAAGCCCTAGGCTTTTGACACTTCCTAAGCACTGGGAGGCTCTACAGTGTCCTCGATTTCTTCC-TAGTTCCTTCCTCACATGCTCAGCTTAACAAA-ATATCAAGTCTTC--A---GTGCTGTGAGAGCAGCTGGGGA----TGAGGAACAGAGA-------------------------------------------GTTGCAAGTAGATCAG
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             487649 294 +   3845361 ctgttttgccaaggattcataattattaatagcagaggattagt-TAATAC-TCCTAACTCCTTGTTTCCAGAACCAGAAC-----ACTCAAACTGATTCTGAGTTACAAAACTTTTAGGATGAAACCCATCAC-TTCATCTTTCTTAGACTTTGCTGCAAAACCCTAAGCTTCTGACACTTCCTAAG---------------CAGTGTCCTTGGTTTCATCC-TCCTTCCTTCCTCACATTCTCAGCTTAACAGA-ATAGCAAGTCTTC--A---GCTGCATGAGAGTGGCTGGGGT----TG-GGGACCGAGG-------------------------------------------GTTGC-AGTAGATCA-
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60063482 308 -  91889043 atagtttgttcagaattcatagctattatcagtagaggcttagtccagtgcactctcactccccttt------accagaaCTCCTAGTTCAGTCCAGTTGAGAATTGT-AAGCTTTCAAGATGAAGCCTGTCACTTATGAGTTATTCACACTTCAGAGCAAACCCTTGGTTTT-TGATACTTCCTAAGCTT---AAGCCTTAAGGGAGTTCTCAGTTTCTTCT-TAATTTCTTCCTCAAATGCTCAGTTTACAAAA-ATAGTAAG---TC--ATAGGCCCCCTGAGAGTAACTGGAGA----TGAGGAGCAGAAA-------------------------------------------G-TTCAAATAGTTCAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             446726 299 +    563711 ATATTTTATCTAGCGTTCATAATTA-----------------ATCAAAAATAACCCAACTTCCCATTATGAGAATTAG-GCTCCTAGCTCACTCTGGATTTGAGCTGT-AAGATGTTAGAATAACACCTGTC-CCTCCAGGTTACT-AGATTTAACAGCAAAACCCTGGTTTT-TGGCCCTTGCTGGACACTGGAAGTCTCTAAGGTATCCTTCTTGTTTTCCTTTACTCCTTCCTCACACAGGCATTTTTTTAAAAAGAGCAAG---TTTAG---TTGCTCTGAGAGGAGCTGGGGT----GGAGGAGCAGAGA-------------------------------------------GTTGCAAGTGCATCGG
i dasNov3.JH562051          I 291 C 0
e mm10.chr7                  56157051   1 + 145441459 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=2056499.000000
s hg38.chr15_KI270851v1_alt    216552 215 +    263054 -GGAAGTGCTATT--TGTGCTGT---------------------AGGTGGGGAGTTCCCAGCTGTAGAGACTGGCAGTTTAGATGTTCACTGATTCATTGCAGTGTGTTTCCCAACTAATACTC--TTTTATTTCTCTTACTTT--TTAATACCTTGTTTAA-CCTCACTGTG------------------GTTATTTAACCCTTGAATAGTTGAGGGTTGTTTTAATGGTACATGAGAG--TCCTGTGTCATTTCTGGCCTGT
s panPan2.chr15              74136938 217 -  99763055 -GGAAGTGCTATT--TGTGCTGT---------------------AGGTGGGGAGTTCCCAGCTGCAGAGACTGGCAGTTTAGATGTTCACTGATTCATTGCAGTGTGTTTCCCAACTAACACTTCTTTTTATTTCTCTTACTTT--TTAATACCTTGTTTAA-CCTCACTGTG------------------GTTATTTAACCCTTCAATAGTTGAGGGTTGTTTTAATGGTACATGAGAG--TCCTGTGTCATTTCTGGCCTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       181450 235 -    281578 -GGAAGTGCTATT--TGGGCTGTAGGTGGGGAGTTCCCGGCTGCAGGTGGGGAGTTCCCAGCTGCAGAGACTGGCAGTTTAGATGTTCACTGATTCATTGCAGTGTGTTTCCC-ACTAATACTC--TTTTATTTCTCTTACTTT--TTAATACCTTGTTTAA-CCTCACTGTG------------------GTTATTTAACCCTTGAATAGTTGAGGGTTGGTTTAATGGTACATGAGAG--TCCTGTGGCATTTCTGGCCTGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71044252 213 + 121039945 -GGAAGTGCTGTT--TGTGCTGT---------------------AGGTGGGGAGTTCCCAGCTGCAGAGACTGGCAGTTTAGATGTTTTCTGATTCATTGCAGTGTGTTTCCCAACTAATAC----TTTTATTTCTCTTATTTT--TTAATACCTCGTTTAA-CCTCACTGTG------------------GTTATTTAACCTTTGAATAGTTGAGGGTTGGTTTAACGGTACATGAGAG--TCTTGTGTCATTTCTGGCCCGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164352551 213 - 169600520 -GGCAGTGCTGTT--TGCGTTGT---------------------CGGTGGGGAGTTCCCAGCTGCAGAGAC--GCAGTTTAGATGTTCACTGTTTCATTGCAGTGTGTTTCCCAACTAATACTC--TTTTATTTCTCTTATTTT--GTAATACCTTGTTTAA-CCTCACTGTG------------------GTTATTTAACCCTTGAATAGTTGGGGGTTGGTTTAATGGTACATGAGAG--TCCTGTGTCATTTCTGGCCTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165673847 213 - 171882078 -GGCAGTGCTGTT--TGCGTTGT---------------------CGGTGGGGAGTTCCCAGCTGCAGAGAC--GCAGTTTAGATGTTCACTGTTTCATTGCAGTGTGTTTCCCAACTAATACTC--TTTTATTTCTCTTATTTT--GTAATACCTTGTTTAA-CCTCACTGTG------------------GTTATTTAACCCTTGAATAGTTGGGGGTTGGTTTAATGGTACATGAGAG--TCCTGTGTCATTTCTGGCCTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       526940 213 +   2379783 -GGCAGTGCTGTT--TGCGTTGT---------------------TGGTGGGGAGTTCCCAGCTGCAGAGAC--GCAGTTTAGATGTTCACTGTTTCATTGCAGTGTGTTTCCCAACTAATACTC--TTTTATTTCTCTTATTTT--GTAATACCTTGTTTAA-CCTCACTGTG------------------GTTATTTAACCCTTGAATAGTTGGGGGTTGGTTTAATGGTACATGAGAG--TCCTGTGTCATTTCTGGCCTGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       485159 213 +   4116138 -GGAAGTGCTGTT--TGCGTTGT---------------------CAGTGGGGAGTTCCCAGCTGCAGAGAC--GCAGTTTAGATGTTCACTGTTTCATTGCAGTGTGTTTCCCAACTAATACTC--TTTTATTTCTCTTATTTT--GTAATACCTTGTTTAA-CCTCACTGTG------------------GTTATTTAACCCTTGAATAGTTGGGGGTTGGTTTAATGGTACATGAGAG--TCCTGTGTCATTTCTGGCCTGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53915946 213 +  58131712 -GGAAGTGCTGTT--TGTGCGGT---------------------CGGTGGGGAGTTCCCAGCTGCAGAGAC--GCAGTTTAGATGTTCACTGATTCGTTGCAGTGTGTTTCCCAACTAATACTG--TTTTATTTCTCTTACTTT--GTGATACCTTGTTTAA-CCTCACTGTG------------------GTCATTTAACCCTTGAATAGTTGGGGGTTGGTTCAGTGGTCCATGAGAG--TCCTGTGTCATTTCTGGCCTGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       537582 212 -   3636681 -GGAAGTGCTGTT--TGCGTTGT---------------------CGGTGGGGAGTTCCCAGCTGCAGAGAC--GCAGTTTAGATGTTCACTGTTTCATTGCAGTGTGTTTCCCAACTAATACTC--TTTTATTTCTCTTA-TTT--GTAATACCTTGTTTAA-CCTCACTGTG------------------GTTATTTAACCCTTGAATAGTTGGGGGTTGGTTTAATGGTACATGAGAG--TCCTGTGTCATTTCTGGCCTGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       515599 214 -   4457520 -GGAAGTGCTGTT--TGTGCTGT---------------------TGGTGGGGCGTCTCCAGCTGCAGAGACTGGCAGTTTAGATGTTCACGGATTCATTGCAGTGTGTTTCCCAACTAATACTC--TTTTATTTCTCTTATTTT--GTAATACCTTGTTTAA-CCTCAC-GTG------------------GTTATTTAACCCTTGAATAGTTGAGGGTTGGTTTAATGGCACATGAGAG--TCCTGTGTCATTTCTGGCCTGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154548385 216 - 158406734 -tgtggtgctgta--ggtgctgt---------------------aggtgGGGAGTG-CCAGCTGCAGAGACTGGCGGTTCAGTTGTTCACTGATTCATCGCAGTGTGTTTCCTAACTAATACTCA-TTTTGTTTCTCTTGTTTT--TTAATACCTTGTTTAACCCTCACCATG------------------GTTATTTAACCCTTGAATAGTTGAGGGTTGATTTAATGGTATATGAGAG--TCCCATGTCGTTTCTGGCCGGT
i calJac3.chr6              I 8 C 0
s saiBol1.JH378292             379360 211 -   2682657 -GGAGGTGCTGGC--GGTGCTGG---------------------AGGTGGGGAGTT-GCAGCTGCAGAGACTGGCAGTCTAGATGTTCACTGGTTCATTGCAATGTGTTTCCTAACTAGTACTC--TTTTATTTCTCTTGCTTT--TTAATACCTTGTTTAACCCTCACCATG------------------GTTATTTAACCCTTGAATAGTTGAGGGTTGACTTAATGGTAGATGAGAG--TCCTGTGTCATTCATGGC----
i saiBol1.JH378292          I 762 C 0
s cebCap1.NW_016107707v1       405201 205 -   2086007 ----------GGA--GGTGCCGT---------------------AGGTGGGGAGTG-CCAACTGCAGAGGCGGGTGGTTTAGGTGTTCACGGATTCATTGCGATGT-TTTTCTAACTAATATTC--TTTTATTTTTCTTGTTTT--TTAATACCTTGTTTAACCCTCACCGTG------------------GTTTTTTAACCCTTGAATAGTTGAGGGTTGATTTAATGGTATATGAGAG--TCCTGTGTCATTTGTGGCCTGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       465734 215 +   3831555 -GGAAGTGCTGTT--TGTGCTGT---------------------AGGTGGGGAGTT-CCAGCTGCAGAGACTGGCGGTTTAGGTGTTCACTGATTCATTGCAATGTGTTTCCTAACTAATACTC--TTCTATTTCTCTTGTTTT--TTAATACCTTATTTAACCCTCCCCATG------------------GTTATTTAACCCTTGAATAGTTGAAGGTTGATTTAATGGTATATGAGAG--TCCTGTGTCATTTATGGTCTGC
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13535676 218 +  16154928 -GGGAGAGGTGTGCACGCGCTGT---------------------AATTAGGGAGTTCACAGCTGCAGACACTGGCAGTGCAGATGTTCACTGATTCATTGCAGTGTGTCTCCCAACTAATTATT--CTTTATTTCCCTTATTTT--TTAATACCATGTTTAACCCCCAAAGTG------------------GGTATTTGACCCTTGAATAGCTGGGGGTTGATTTATTGGTACATAAGAA--TCTGGTGTCATTTCTGGCCTGT
i proCoq1.NW_012148396v1    C 0 I 98
s otoGar3.GL873689             487943 180 +   3845361 -GATAGTGGTGTG---GGGCTGT---------------------GGCCAGGGCGT---CTGCTGCACACACTGGCGGTGTGGGTGTTCACTGCTTTACTGCAGTGTGTCTCCTGACT-------------------CATGTTCT--GTAACACCATCTTAAACCTCCAAAGTG------------------TGTGTTTTATTCCTAAATAGCT-GAGGTTGACTTAGTGGTACGCGAGAG--TC--------------GCCTGT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60063790 228 -  91889043 -GGAAAGAGTG----TGTACTGG---------------------AGGTAGGGAGTC-CCAAATGTAGACTCCAGAAATGCATACATTCATTGATTGATTATAATTTGTTTCCCAAT-----CTT--CTTTATTTACTTTTTTTT--TTTTAACCATGTTTAACTCTCAGAGCGGTTTTTTTTTTGTTTTTTGTTTTTTAACCCATGAATCGTTAAGAGTTGATTTGATGGTACATGAGAGAATTCTGTGTCCTCTCTGGCTTAT
i canFam3.chr3              C 0 I 5
s dasNov3.JH562051             447025 192 +    563711 GAGAGGGGGTGTG--TTTGCTGG---------------------TGTTCCAG-GTTCTCA-CTGCAGACTGGGACAGGT---GTGTTGATGGACTCATAGCAGTTTGCTTCTCAACACATATGC--CTTTTTCCCCCTTATTTTAAAAAATACCATGTAAAACCCACAAATGG------------------GTTATTTTGCCTTTGAAT---------TTG-------------TAAAAG--CCTTGGATGTTTTCTAGCCCGT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56157051   1 + 145441459 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=744755.000000
s hg38.chr15_KI270851v1_alt    216767 110 +    263054 ---------CTAAAACACAGGTG-CCTGTGGCCGCCACCACAGTGCCTGGTTAAGGCAGGGGAAATG---CCTTTCTCCCTGCT--CC--------CTCAAGCCCCTGTGACT------------------GCT----------CGCTT----------AGGGCTGTAATG
s panPan2.chr15              74137155 110 -  99763055 ---------CTAAAACACAGGTG-CCTGTGGCCCCCACCACAGTGCCTGGTTAAGGCAGGGGAAATG---CCTTTCTCCCTGCT--CC--------TTCAAGCCCCTGTGACT------------------GCT----------CGCTT----------GGGGCTGTAATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       181685 110 -    281578 ---------CTAAAACACAGGTG-CCTGTGGCCCCCACCACAGTGCCTGGTTAAGGCAGGGGGAATG---CCTTTCTCCCTGCT--CC--------TTCAAGCCCCTGTGACT------------------GCT----------CGCTT----------AGGGCTGTAATG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71044465 110 + 121039945 ---------CTAAAACACAGGTG-CCTGTGGCCCCCACCACAGTGCCTGGTTAAGGCAGGGGGAATG---CCTTTCTCCCTGCT--CC--------CTCCAGCCCCTGTGACT------------------GCT----------CACTT----------AGGGCTGTAATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164352764 110 - 169600520 ---------CTAAAACACAGGTG-CCTGTGGTCACCACC---ATGCCCAGTTAAGGCGGGGGGAATA---CCTTTCTCCCCGCT--CCCAC-----CTCAAGCCCCTGTGACT------------------GCT----------CGCTT----------AGGGCTGTGATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165674060 110 - 171882078 ---------CTAAAACACAGGTG-CCTGTGGTCACCACC---GTGCCCAGTTAAGGCGGGGGGAATG---CCTTTCTCCCCGCT--CCCAC-----CTCAAGCCCCTGTGACT------------------GCT----------CGCTT----------AGGGCTGTGATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       527153 110 +   2379783 ---------CTAAAACACAGGTG-CCTGTGGTCACCACC---GTGCCCAGTTAAGGCGGGGGGAATG---CCTTTCTCCCTGCT--CCCAC-----CTCAAGCCCCTGTGACT------------------GCT----------CGCTT----------AGGGCTGTGATG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       485372 110 +   4116138 ---------CTAAAACACAGGTG-CCTGTGGTCAGCACC---GTGCCCAGTTAAGGCGGGGGGAATG---CCTTTCTCCCTGCT--CCCAT-----CTCAAGCCCCTGTGACT------------------GCT----------CGCTT----------AGGGCTGTGATG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53916159 107 +  58131712 ---------CTAAAACACAGGCG-CCTGTGGTCACCGCC---GTGCCCAGTGAGGGCGGGGG---TG---CCTTTCTCCCTGCT--CCCAC-----CTCAAGCCACTGTGACT------------------GCT----------CGCTT----------AGGGCTGTGATG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       537794 110 -   3636681 ---------CTAAAACACAGGTG-CCTGTGGTCACCACC---GTGCCCAGTTAAGGCGGGGGGAATG---CCTTTCTCCCTGCT--CCCAC-----CTCAAGCCCCTGTGACT------------------GCT----------CGCTT----------AGGGCTGTGATG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       515813 110 -   4457520 ---------ATAAAACACAGGTG-CCTGTGGTCACCATC---GTGCCCAGTTAAGGCAGGGGGAATG---CCTTTCTCCCTGCT--CCCAC-----CTCAAGCCCCTGTGACG------------------GCT----------CGCTT----------AGGGCTGTAATG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154548601 109 - 158406734 ---------CTAAAACACAGGTG-CCTGTGACCACCGTCCCAGTGCCTGGTTCAGGCGTGGGG-ATG---CCTTTCACTCTGCT--CC--------ATCGAGCCCTTCTGACT------------------GCG----------TGTGT----------AGGGCTGTTAGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             379571 110 -   2682657 ---------CTAAAATACAAGTG-CCCGTGACCACCATCACAGTGCCTGGTTACGGCGTGGGGAACG---CCTTTCTCCCAGCT--CC--------ATCGAGCCCTTCTGACT------------------GCT----------TGTGT----------AGGGCTGTTAGG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       405406 104 -   2086007 ---------CTAAAACACAGGTG-CCTGTGTCCACCATCACAGTGCCTGGTTAAGGCGTGGGGAATG---CCTTTCTCCCTGCT--CC--------ATCGAGCCCTTCTGACT------------------GCT----------TGTGT----------AGGGCT------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       465949 110 +   3831555 ---------GTAAAACACAGGTG-CCTGTGACCACCATCACAGTGCCTGGTTAAGGCGTGGGGAATG---CCTTTCTCCCTGCT--CT--------ATTGAGCCCTTCTGACT------------------GCC----------TGTGT----------AGGGCCGTTAGG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             488123  92 +   3845361 -----------GTTACAGAGGTA-AGAGCAG-----------GTGCTTGGCTGTGACAAGGGGGACGCGTCCTTCCTCCCTGCA--CTCTCTTTCGGTCAAACTCT------------------------------------------------------GGGCTGTTGGG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60064023 128 -  91889043 ---------GAAAAGAGCAGGAG-ACTGTGGACACTGCCT--GGTCATGGGGAAGGGGTCAGGGACT---CCTTTCTCCCC---------------ATCCAGCCCCACTCACTCTGCATTTAATTTGCTCAGCT----------TGTTTCCCACTCAGAGTGGCTGTG---
i canFam3.chr3              I 5 C 0
s dasNov3.JH562051             447217 103 +    563711 TGGTGGAGGGAAGAGCACAGGTGACCTG--------------------------GGCCTGGGGCATA---CCCCTCTCCCAGCGGACCAGA-----ACCAGAGCCTCGCTCCT------------------CCTGCGCTCTTTCTGCTC----------AGGGCG------
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56157051   1 + 145441459 I
e proCoq1.NW_012148396v1     13535894  98 +  16154928 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=320748.000000
s hg38.chr15_KI270851v1_alt    216877 27 +    263054 AAGTTTTCCTTAATGGACATTGATACT
s panPan2.chr15              74137265 27 -  99763055 AAGTTTTCCTTAATGGACATTGATACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       181795 27 -    281578 AAGTTTTCCTTAATGGACATTGATCCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71044575 27 + 121039945 AAGTTTTCCTTAATGGACATTGATACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164352874 27 - 169600520 ACATTTTCCTTAATGGACATTGATACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165674170 27 - 171882078 ACATTTTCCTTAATGGACATTGATACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       527263 27 +   2379783 ACATTTTCCTTAATGGACATTGATACT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       485482 27 +   4116138 ACATTTTCCTTAATGGACATTGATACT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53916266 27 +  58131712 ACATTTTCCTTAGTGGACGTTGATACT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       537904 27 -   3636681 ACATTTTCCTTAATGGACATTGATACT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       515923 27 -   4457520 AGGTTTTCCTTAATGGACATTGATACT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154548710 27 - 158406734 AAGTTTTCCTTAATGGACATTGATACT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             379681 27 -   2682657 AAGTTTTCCTTAATGGAAATTGATACT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       405510 25 -   2086007 --GTTTTCCTTAATGGACATTGATACT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       466059 27 +   3831555 AAGTTTTCCTTAATGGACATTGATACT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13535992 27 +  16154928 AAGTTTTCCTTAATAAACATTGATATT
i proCoq1.NW_012148396v1    I 98 C 0
s otoGar3.GL873689             488215 27 +   3845361 AAGTTTTCCATACTGAAAATTGACACT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60064151 27 -  91889043 AAGTTTTCTTGAATGGACATTGATAAT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             447320 17 +    563711 ----------TAAAGGGTCTTGATGAT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56157051  1 + 145441459 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=203236.000000
s hg38.chr15_KI270851v1_alt    216904 17 +    263054 TGGCTAATTTAGTAGGC
s panPan2.chr15              74137292 17 -  99763055 TGGCTAATTTAGTAGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       181822 17 -    281578 TGGCTAATTTAGTAGGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71044602 17 + 121039945 TGGCTAATTTAGTAGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164352901 17 - 169600520 TGGCTAATTTAGTAGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165674197 17 - 171882078 TGGCTAATTTAGTAGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       527290 17 +   2379783 TGGCTAATTTAGTAGGC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       485509 17 +   4116138 TGGCTAATTTAGTAGGC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53916293 17 +  58131712 TGGCTAATTTAGTAGGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       537931 17 -   3636681 TGGCTAATTTAGTAGGC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       515950 17 -   4457520 TGGCTAATTTAGTAGGC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154548737 16 - 158406734 TAGCTAATTTACTAGG-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             379708 17 -   2682657 TAGCTAATTTACTAGGC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       405535 16 -   2086007 TAGCTAATTTACTAGG-
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       466086 17 +   3831555 TAGCTAATTTACTAGGC
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13536019 17 +  16154928 TGGCAAATTTACTAGGC
i proCoq1.NW_012148396v1    C 0 I 49
s otoGar3.GL873689             488242 17 +   3845361 GGGCTAATTTACTAGGC
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56157052 15 + 145441459 TGACTAATTGACTAG--
i mm10.chr7                 I 1 C 0
s canFam3.chr3               60064178 17 -  91889043 TGGCTAATTTACTGTGT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             447337 17 +    563711 GGGCCTGTTTGCCAGGT
i dasNov3.JH562051          C 0 C 0
e panTro5.chr15               9611979 100 +  83230942 I

a score=439300.000000
s hg38.chr15_KI270851v1_alt    216921 53 +    263054 TCTCTGTCTGCTGAAAC----AGGCAA----GTTATTTTACCACCAAGTATTTTCTCTGCA
s panPan2.chr15              74137309 53 -  99763055 TCTCTGTCTGCTGAAAC----AGGCAA----GTTATTTTACCCCCACGTATTTTCTCTGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       181839 53 -    281578 TCTCTGTCTGCTGAAAC----AGGCAA----GTTATTTTACCCCCACGTATTTTCTCTGCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71044619 53 + 121039945 TCTCTGTCTGCTGAAAC----AGGAAA----GTTATTTTATGACCAAGTATTTTCTCTGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164352918 53 - 169600520 TCTCTGTCTGCTGAAAC----AGGAAA----GTTATTTTACCACCAAGTATTTTCTCTGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165674214 53 - 171882078 TCTCTGTCTGCTGAAAC----AGGAAA----GTTATTTTACCACCAAGTATTTTCTCTGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       527307 53 +   2379783 TCTCTGTCTGCTGAAAC----AGGAAA----GTTATTTTACCACCAAGTATTTTCTCTGCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       485526 53 +   4116138 TCTCTGTCTGCTGAATC----AGGAAA----GTTATTTTACCACCAAGTATTTTCTCTGCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53916310 53 +  58131712 TCTCTGTCTGCTGAAAC----AGGAAA----GTTATTTTACCACCAAGTTTTTTCTCTGCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       537948 53 -   3636681 TCTCTGTCTGCTGAAAC----AGGAAA----GTTTTTTTACCACCAAGTATTTTCTCTGCA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       515967 53 -   4457520 TCTCTGTCTGCTGAAAC----AGGAAA----GTTATTTTACCACCAAGTATTTTCTCTGCA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154548753 52 - 158406734 -CTCTGTTTGCTGAAAC----AGGAAA----GTTATTTCACCACCAAATATTGGCTCTGCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             379725 53 -   2682657 TCTCTGTTTGCTGAGAC----AGGAAA----GTTATTTCACCACCAAATATTGGCTCTGCG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       405551 41 -   2086007 ---CTGTTT-------------GGAAA----GTTATTTCACCACCAAATATTGGCTCTGCA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       466103 53 +   3831555 TCTCTGTTTGCTGAAAC----AGGAAA----GTTATTTCAGAACCAAATATTGGCTCTGCA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             488259 30 +   3845361 TCTTGGTGT-------------------------------TCACCAGATCTTCCCGTTTTA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56157067 46 + 145441459 ----CAGTTACTGAAGC----AGTCAGCAGCGTTATTTGACTATCAATTCTCTT-------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60064195 51 -  91889043 GCTGTGTATGCTGAAGC----AGGA------GTTACTTGACCATCACATCTTTCCTCTGCA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             447354 53 +    563711 --TCTGCTTGCTGAGTCAGTTAGGCAG----GCTCTTGGGCTGTCAGATATT--CTTTGCA
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13536036 49 +  16154928 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=503937.000000
s hg38.chr15_KI270851v1_alt    216974 43 +    263054 TTAAACTGCGAAACTTGGCTTTGTCATTTTCTAACATGTTTTA
s panPan2.chr15              74137362 43 -  99763055 TTAAACTGTGAAACTTGGCTTTGTCATTTTCTAACATGTTCTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       181892 43 -    281578 TTAAACCGTGAAACTTGGCTTTGTCATTTTCTAACATGTTTTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71044672 43 + 121039945 TTAAACCAAGAAACTTGGCTTTGTCATTTTCTAACATGTTTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164352971 43 - 169600520 TTAAACTGCGAAACTTGGCTTTGTCATTTTCTAACATGTTTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165674267 43 - 171882078 TTAAACTGCGAAACTTGGCTTTGTCATTTTCTAACATGTTTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       527360 43 +   2379783 TTAAACTGCGAAACTTGGCTTTGTCATTTTCTAACATGTTTTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       485579 43 +   4116138 TTAAACTGCGAAACTTGGCTTTGTCATTTTCTAACATGTTTTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53916363 43 +  58131712 TTAAACTGCGAAACTTGCCTTTGTCATTTTCTAGCATGTTTTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       538001 43 -   3636681 TTAAACTGCGAAACTTGGCTTTGTCATTTTCTAACATGTTTTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       516020 43 -   4457520 TTGAACTGCGAAACTTGGGTTTGTCATTTTCTAACATGTTTTA
i colAng1.NW_012115278v1    C 0 I 1
s calJac3.chr6              154548805 43 - 158406734 TTAAACAGTGAGACTTCGCTTTGTCATTTTCTGATATGCTATA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             379778 43 -   2682657 TTAAACAGTGAGACTTCGCTTTGTCATTTTCTAATATGCTTTA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       405592 43 -   2086007 TTAAACTGTGAAACTTCACTTTGTCATTTTCTAATATGCTTTA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       466156 43 +   3831555 TTAAACAGTGAAACTTTGCTTTGTCATTTTCTAATATGCTTTA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13536085 43 +  16154928 TTAAACTGTCAAACTTGGCTTTGTCATTTTCTAACATGTTTTA
i proCoq1.NW_012148396v1    I 49 I 179
s otoGar3.GL873689             488289 41 +   3845361 TTAAACTGTCAAACCCAGCTTCGTCATTTCCTAAC--GTTTTA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56157113 30 + 145441459 ------------ACCTAGCTTT-CCTGTCTCTAACACGTTTTA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60064246 39 -  91889043 TTAAACTGTGAAAGTTGTCGTGGCTGT----TAAGATGTTTTA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             447407 41 +    563711 TTGAACTGTGTAACTTGTGTTT-TCCTCTTCTCACATGTTTT-
i dasNov3.JH562051          C 0 C 0
e panTro5.chr15               9611979 100 +  83230942 I

a score=430465.000000
s hg38.chr15_KI270851v1_alt    217017 50 +    263054 GGAACTCATTGA--AAAACGCACATGTGAATGTGGGCTTTCTAGACTTGCAT
s panPan2.chr15              74137405 50 -  99763055 GGAACTCACTGA--AAAACACACATGTGAATGCGGGCTTTCTAGACTTGCGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       181935 50 -    281578 GGAACTCATTGA--AAAACACACATGTGAATGCGGGCTTTCTAGACTTGCGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71044715 48 + 121039945 GGAACTCATTGA--AAAACACAC--GTGAATATGGGCTTTCTAGACTTGCGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164353014 50 - 169600520 GGAACTCACTGA--AAAATGCACATGTGAATGTGGGCTTTCTAGACTTGCAT
i rheMac8.chr7              C 0 I 28
s macFas5.chr7              165674310 50 - 171882078 GGAACTCACTGA--AAAATGCACATGTGAATGTGGGCTTTCTAGACTTGCAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       527403 50 +   2379783 GGAACTCACTGA--AAAACGCACATGTGAATGTGGGCTTTCTAGACTTGCAT
i macNem1.NW_012011934v1    C 0 I 28
s cerAty1.NW_012001462v1       485622 50 +   4116138 GGAACTCACTGA--AAAACGCACATGTGCACGTGGGCTTCCTAGACTTGCGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53916406 50 +  58131712 GGAACTCATTGA--AAAACGCACATGTGAATGTGGGCTTTCTAGACTTGCAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       538044 50 -   3636681 GGAACTCACTGA--AAAACGCACATGTGAATGTGGGCTTTCTAGACTTGCAT
i manLeu1.NW_012102332v1    C 0 I 27
s colAng1.NW_012115278v1       516064 50 -   4457520 GGAACTCACTGA--AAAACGCACATGTGAATGTGGGCTTTCTAGACTTGCAT
i colAng1.NW_012115278v1    I 1 C 0
s calJac3.chr6              154548848 49 - 158406734 GGAACTCA-TGA--AAAATGCCTATGTGAATGTAGGCTTTTTAAACTTATAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             379821 49 -   2682657 GGAACTCA-TGA--AGAATGCATATGTGAATGTGGGCTTTTAAAACTTGCAT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       405635 49 -   2086007 GGAACTCA-TGA--AAAATGCATATGTGAATGTGGGCTTTTTAAACTTGCAT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       466199 49 +   3831555 GGAACTCA-TGA--AAAATGCATATGTGAATGTGGGCTTTTTAAACTTGCAT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             488330 48 +   3845361 GCAACTCACTTA--CAAAAGCC--TGCAAACTGGGGCTTTTGCTGCCTCTGC
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56157143 50 + 145441459 TTAGTTCATTTT--GAGACTCACTCATGAATCTGGGGCTTCCTGTAATGCAG
i mm10.chr7                 C 0 I 26
s canFam3.chr3               60064285 39 -  91889043 TCCATTCATTTA--AAAA-----------GTGTGAGTTTTCCATACTTCTGT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             447448 48 +    563711 ----CTCATTAATTTAAAAATATGTGTGGGTTTGAATTGTCTGTACTTCTAT
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13536128 179 +  16154928 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=21275.000000
s hg38.chr15_KI270851v1_alt    217067 4 +    263054 GATG
s panPan2.chr15              74137455 4 -  99763055 ACTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       181985 4 -    281578 ACTG
i gorGor5.CYUI01000141v1    C 0 I 24
s nomLeu3.chr6               71044763 4 + 121039945 ACTG
i nomLeu3.chr6              C 0 I 24
s macFas5.chr7              165674360 4 - 171882078 ACCG
i macFas5.chr7              C 0 I 24
s cerAty1.NW_012001462v1       485672 4 +   4116138 GCCG
i cerAty1.NW_012001462v1    C 0 I 22
s chlSab2.chr26              53916456 4 +  58131712 ACTG
i chlSab2.chr26             C 0 I 24
s colAng1.NW_012115278v1       516114 4 -   4457520 ACTG
i colAng1.NW_012115278v1    C 0 I 24
s calJac3.chr6              154548897 4 - 158406734 ACTG
i calJac3.chr6              C 0 I 778
s saiBol1.JH378292             379870 4 -   2682657 ACTG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       405684 4 -   2086007 ACTG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       466248 4 +   3831555 ACTG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             488378 4 +   3845361 ACTG
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56157219 3 + 145441459 ATT-
i mm10.chr7                 I 26 C 0
s canFam3.chr3               60064324 4 -  91889043 ATTG
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             447496 4 +    563711 GCTA
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13536128 179 +  16154928 I
e panTro5.chr15               9611979 100 +  83230942 I
e manLeu1.NW_012102332v1       538094 27 -   3636681 I
e macNem1.NW_012011934v1       527453 28 +   2379783 I
e rheMac8.chr7              164353064 28 - 169600520 I

a score=14742.000000
s hg38.chr15_KI270851v1_alt    217071 1 +    263054 C
s panPan2.chr15              74137459 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182013 1 -    281578 C
i gorGor5.CYUI01000141v1    I 24 C 0
s nomLeu3.chr6               71044791 1 + 121039945 C
i nomLeu3.chr6              I 24 C 0
s rheMac8.chr7              164353092 1 - 169600520 C
i rheMac8.chr7              I 28 C 0
s macFas5.chr7              165674388 1 - 171882078 C
i macFas5.chr7              I 24 C 0
s macNem1.NW_012011934v1       527481 1 +   2379783 C
i macNem1.NW_012011934v1    I 28 C 0
s cerAty1.NW_012001462v1       485698 1 +   4116138 C
i cerAty1.NW_012001462v1    I 22 C 0
s chlSab2.chr26              53916484 1 +  58131712 C
i chlSab2.chr26             I 24 C 0
s manLeu1.NW_012102332v1       538121 1 -   3636681 C
i manLeu1.NW_012102332v1    I 27 C 0
s colAng1.NW_012115278v1       516142 1 -   4457520 C
i colAng1.NW_012115278v1    I 24 C 0
s calJac3.chr6              154549679 1 - 158406734 C
i calJac3.chr6              I 778 C 0
s saiBol1.JH378292             379874 1 -   2682657 C
i saiBol1.JH378292          C 0 I 130
s cebCap1.NW_016107707v1       405688 1 -   2086007 C
i cebCap1.NW_016107707v1    C 0 I 23
s aotNan1.NW_018503298v1       466252 1 +   3831555 C
i aotNan1.NW_018503298v1    C 0 I 84
s otoGar3.GL873689             488382 1 +   3845361 C
i otoGar3.GL873689          C 0 I 4
s mm10.chr7                  56157222 1 + 145441459 C
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60064328 1 -  91889043 C
i canFam3.chr3              C 0 I 522
s dasNov3.JH562051             447500 1 +    563711 T
i dasNov3.JH562051          C 0 I 24
e proCoq1.NW_012148396v1     13536128 179 +  16154928 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=127497.000000
s hg38.chr15_KI270851v1_alt    217072 19 +    263054 CCCATGT------TCC-----TAGACTG-TG--
s panPan2.chr15              74137460 19 -  99763055 CCCATGT------TCC-----CAGACTG-CG--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182014 19 -    281578 CCCGTGT------TCC-----TAGACTG-TG--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71044792 19 + 121039945 CCCATGT------TCC-----TAGACTG-TG--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164353093 19 - 169600520 CCCGTGT------TCC-----TAGACTG-TG--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165674389 19 - 171882078 CCCGTGT------TCC-----TAGACTG-TG--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       527482 19 +   2379783 CCCGTGT------TCC-----TAGACTG-TG--
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       485699 17 +   4116138 CCCGTGT------TCC-----TAGAC---TG--
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53916485 19 +  58131712 CCCGTGT------TCC-----TAGACTG-TG--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       538122 19 -   3636681 CCCGTGT------TCC-----TAGACTG-TG--
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       516143 19 -   4457520 CCCGTGT------TCC-----CAGAGTG-TG--
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154549680 17 - 158406734 CCCGTGC------TCC-----TAGAC---TG--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             380005 17 -   2682657 CCCATGC------TCC-----TAGAC---TG--
i saiBol1.JH378292          I 130 C 0
s cebCap1.NW_016107707v1       405712 17 -   2086007 CCCGTGC------TCC-----TAGAC---CG--
i cebCap1.NW_016107707v1    I 23 C 0
s aotNan1.NW_018503298v1       466337 17 +   3831555 CCCGTGC------TCC-----TAGAC---TG--
i aotNan1.NW_018503298v1    I 84 C 0
s otoGar3.GL873689             488387 22 +   3845361 CATACGT------TCCTTGTGTAGAC---TG--
i otoGar3.GL873689          I 4 C 0
s mm10.chr7                  56157223 26 + 145441459 CTTATATGGTAGATAG-----TAGATAGATA--
i mm10.chr7                 C 0 C 0
s dasNov3.JH562051             447525 19 +    563711 TTCATTT------TCT-----TAGAC---TGCT
i dasNov3.JH562051          I 24 C 0
e proCoq1.NW_012148396v1     13536128 179 +  16154928 I
e canFam3.chr3               60064329 522 -  91889043 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=772491.000000
s hg38.chr15_KI270851v1_alt    217091 70 +    263054 TAAGCTAGCCGAGGGCAC-------------TTCCCAAACCTCCCAGGA----CC-CTCTTGTCTGCCCAGACTGCTGCACTGGCCGT
s panPan2.chr15              74137479 70 -  99763055 AAAGCTAGCCGAGGGCAC-------------TTCCCAAACCTCCCAGGA----CC-CTCTTGTCTGCCCAGACTGCTGCACTGGCCGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182033 70 -    281578 TAAGCTAGCTGAGGGCAC-------------TTCCCAAACCTCCCAGGA----CC-CTCTTGTCTGCCCAGGCTGCTGCACTGGCCGT
i gorGor5.CYUI01000141v1    C 0 I 15
s nomLeu3.chr6               71044811 70 + 121039945 TAAGCTAGCCGAGGGCAC-------------TTCCCAAACCTCCCAGGA----CC-CTCTTGTCTGCCCAGGCTGCTGCACTGGCCGT
i nomLeu3.chr6              C 0 I 15
s rheMac8.chr7              164353112 70 - 169600520 TAAGCTAGCCGAGGGCAC-------------TTCCCAAACCTTCCAGGA----CC-CTCTTGTCTGCCTAGGCTGCTGCACTGGCCGT
i rheMac8.chr7              C 0 I 15
s macFas5.chr7              165674408 70 - 171882078 TAAGCTAGCCGAGGGCAC-------------TTCCCAAACCTCCCAGGA----CC-CTCTTGTCTGCCTAGGCTGCTGCACTGGCCGT
i macFas5.chr7              C 0 I 15
s macNem1.NW_012011934v1       527501 70 +   2379783 TAAGCTAGCCGAGGGCAC-------------TTCCCAAACCTCCCAGGA----CC-CTCTTGTCTGCCTAGGCTGCTGCACTGGCCGT
i macNem1.NW_012011934v1    C 0 I 15
s cerAty1.NW_012001462v1       485716 70 +   4116138 TAAGCTAGCCGAGGGCAC-------------TTCCCACACCTCCCAGGA----CC-CTCTTGTCTGCCTAGGCTGCTGCACTGGCCGT
i cerAty1.NW_012001462v1    C 0 I 15
s chlSab2.chr26              53916504 70 +  58131712 TAAGCTAGCCGAGGGCAC-------------TTCCCAAACCTCCCAGGA----CC-CTCTTGTCTGCCTAGGCTGCCGCACTGGCCGT
i chlSab2.chr26             C 0 I 15
s manLeu1.NW_012102332v1       538141 70 -   3636681 TAAGCTAGCCGAGGGCAC-------------TTCCCACACCTCCCAGGA----CC-CTCTTGTCTGCCTAGGCTGCTGCACTGGCCGT
i manLeu1.NW_012102332v1    C 0 I 15
s colAng1.NW_012115278v1       516162 70 -   4457520 TAAGCTAGCTGAGGGCAC-------------TTCCCAGACCTCCCAGGA----CC-CTCTTGTCTGCCCAGGCTGCTGCACTGGCCGT
i colAng1.NW_012115278v1    C 0 I 15
s calJac3.chr6              154549697 69 - 158406734 TAAGCTAGCCAAGGGCAC--------------TCCCAAACCTCCCAGGA----CT-CTCTTGTCTGCCCAGGCTGCTGCCTTGGCCGT
i calJac3.chr6              C 0 I 15
s saiBol1.JH378292             380022 69 -   2682657 TAAGCTAGCCGAGGGCAC--------------TCCCAAACCTCCCAGGA----CC-CTCTTGTCTGCCCAGGCTGCTGCCTTGGCCGT
i saiBol1.JH378292          C 0 I 15
s cebCap1.NW_016107707v1       405729 69 -   2086007 TAAGCTAGCCAAGGGCAC--------------TTCCAAACCTCCCAGGA----CC-CTCTTGTCTGCCCAGGCTGCTGCCTTGGCCGT
i cebCap1.NW_016107707v1    C 0 I 15
s aotNan1.NW_018503298v1       466354 69 +   3831555 TAAGCTAGCCGAGGGCAC--------------TCCCAAACCTCCCAGGA----CC-CTCTTGTCTGCCCAGGCTGCTGCCTTGGCCGT
i aotNan1.NW_018503298v1    C 0 I 15
s otoGar3.GL873689             488409 68 +   3845361 CGAGCTCGCTGA-GGCAC-------------AGCACAGACCT-CTGGAA----CC-CTCTTGTCTATACAGGCTGCTGCCCTTGCAGT
i otoGar3.GL873689          C 0 I 15
s mm10.chr7                  56157249 58 + 145441459 TTAGATAG---AAGACCA-------------TCTACAAACCTTC--------------CTTATCTGCCCAGGCTGCTGCTTTGGCTCT
i mm10.chr7                 C 0 I 15
s canFam3.chr3               60064851 84 -  91889043 tgagccagccagggaccccAGTCTCTTGACTTTTATAAACCTCCCAGCT----CCATTCTCATTTGTTCAGGCTGCGGCGCTGGCTGT
i canFam3.chr3              I 522 I 15
s dasNov3.JH562051             447544 74 +    563711 CAGATTAACCAATGGCAC-------------TGTATAGAGCCCCCAGGAAAGCCC-CTCTCATTTTCCCAGGCTGCTGCTTTGGCTGT
i dasNov3.JH562051          C 0 I 15
e proCoq1.NW_012148396v1     13536128 179 +  16154928 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=3844409.000000
s hg38.chr15_KI270851v1_alt    217161 251 +    263054 TGTGGAGTCCACTCACCCTTCGAGCCCAGGATTTGAAGACTGCAGCTCCAGTGAGGCCACCACGCCTGTCAACGTGCAGCACATCCGCCCTGCCAGAGTGAAGAGGCGCAAGCAGTCGCCCGTTCCCGCTCTGCCGATCGTGGTGCAGCTCATGGAGATGGGATTTCCCAGAAGGAACATCGAGTTTGCCCTGAAGTCTCTCACTGGTGCTTCCGGGAATGCGTCCGGCTTGCCTGGTACTTCGTTTTCCT
s panPan2.chr15              74137549 251 -  99763055 TGTGGAGTCCACTCACCCTTCGAGCCCAGGATTTGAAGACTGCAGCTCCAGTGAGGCCACCACGCCTGTCGCCGTGCAGCACATCCGCCCTGCCAGAGTGAAGAGGCGCAAGCAGTCGCCCGTTCCTGCTCTGCCGATCGTGGTGCAGCTCATGGAGATGGGATTTTCCAGAAGGAACATCGAGTTTGCCCTGAAGTCTCTCACTGGTGCTTCCGGGAATGCATCCGGCTTGCCTGGTACTTCGTTTTCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182118 251 -    281578 TGTGGAGTCCACTCACCCTTCGAGCCCAGGATTTGAAGACTGCAGCTCCAGTGAGGCCACCACGCCTGTCGCCGTGCAGCACATCCGCCCTGCCAGAGTGAAGAGGCGCAAGCAGTCGCCCGTTCCCGCTCTGCCGATCGTGGTGCAGCTCATGGAGATGGGATTTTCCAGAAGGAACATCGAGTTTGCCCTGAAGTCTCTCACTGGTGCTTCCGGGAATGCAGCTGGCTTGCCTGGTACTTTGTTTTCCT
i gorGor5.CYUI01000141v1    I 15 C 0
s nomLeu3.chr6               71044896 251 + 121039945 TGTGGAGTCCACTCACCCTTCGAGCCCAGGATTTGAAGACTGCAGCTCCAGTGAGGCCACCACGCCTATCGCGGTGCAGCACATCCGCCCTGCCAGAGTGAAGAGGCGCAAGCAGTCGCCCGTTCCCGCTCTGCCGATTGTGGTGCAGCTCATGGAGATGGGATTTCCCAGAAGGAACATCGAGTTTGCCCTGAAGTCTCTCACTGGTGCTTCCGGGAATGCATCTGGCTTGCCTGGTACTTCGTTTTCCT
i nomLeu3.chr6              I 15 C 0
s rheMac8.chr7              164353197 251 - 169600520 TGTGGAGTCCACTCACCCTTCGAGCCCAGGATTTGAAGACTGCAGCTCCAGTGAGGCCACCACGCCTGTTGCCGTGCAGCACATCCGCCCTGCCAGAGTGAAGAGGCGCAAGCAGTCTCCCGTTCCCGCCCTGCCCATTGTGGTGCAGCTCATGGAGATGGGATTTCCCAGAAGGAACATCGAGTTTGCGCTGAAGTCTCTCACCGGTGCTTCCGGGAATGCATCCGGCTTGCCTGGTACTTCATTTTCCT
i rheMac8.chr7              I 15 C 0
s macFas5.chr7              165674493 251 - 171882078 TGTGGAGTCCACTCACCCTTCGAGCCCAGGATTTGAAGACTGCAGCTCCAGTGAGGCCACCACGCCTGTTGCCGTGCAGCACATCCGCCCGGCCAGAGTGAAGAGGCGCAAGCAGTCTCCCGTTCCCGCCCTGCCCATTGTGGTGCAGCTCATGGAGATGGGATTTCCCAGAAGGAACATCGAGTTTGCGCTGAAGTCTCTCACCGGTGCTTCCGGGAATGCATCCGGCTTGCCTGGTACTTCATTTTCCT
i macFas5.chr7              I 15 C 0
s macNem1.NW_012011934v1       527586 251 +   2379783 TGTGGAGTCCACTCACCCTTCGAGCCCAGGATTTGAAGACTGCAGCTCCAGTGAGGCCACCACGCCTGTTGCCGTACAGCACATCCGCCCGGCCAGAGTGAAGAGGCGCAAGCAGTCTCCCGTTCCCGCCCTGCCCATTGTGGTGCAGCTCATGGAGATGGGATTTCCCAGAAGGAACATCGAGTTTGCGCTGAAGTCTCTCACCGGTGCTTCCGGGAATGCATCCGGCTTGCCTGGTACTTCATTTTCCT
i macNem1.NW_012011934v1    I 15 C 0
s cerAty1.NW_012001462v1       485801 251 +   4116138 TGTGGAGTCCACTCACCCTTCGAGCCCAGGATTTGAAGACTGCAGCTCCAGTGAGGCCACCACGCCTGTCGCCGTGCAGCACATCCGCCCGGCCAGAGTGAAGAGGCGCAAGCAGTCTCCCGTTCCCGCCCTGCCCATTGTGGTGCAGCTCATGGAGATGGGATTTCCCAGAAGGAACATCGAGTTTGCGCTGAAGTCTCTCACCGGTGCTTCCGGGAATGCATCCGGCTTGCCTGGTACTTCATTTTCCT
i cerAty1.NW_012001462v1    I 15 C 0
s chlSab2.chr26              53916589 251 +  58131712 TGTGGAGTCCACTCACCCTTCGAGCCCAGGATTTGAAGACTGCAGCTCCAGTGAGGCCACCACGCCTGTCGCCGTGCAGCACATCCGCCCAGCCAGAGTGAAGAGGCGCAAGCAGTCTCCCGTTCCCGCCCTGCCCATTGTGGTGCAGCTCATGGAGATGGGATTTCCCAGAAGGAACATCGAGTTTGCGCTGAAGTCTCTCACGGGTGCTTCCGGGAATGCATCCGGCTTGCCTGGTACTTCATTTTCCT
i chlSab2.chr26             I 15 C 0
s manLeu1.NW_012102332v1       538226 251 -   3636681 TGTGGAGTCCACTCACCCTTCGAGCCCAGGATTTGAAGACTGCAGCTCCAGTGAGGCCACCACGCCTGTCGCCGTGCAGCACATCCGCCCGGCCAGAGTGAAGAGGCGCAAGCAGTCTCCCGTTCCCGCCCTGCCCATTGTGGTGCAGCTCATGGAGATGGGATTTCCCAGAAGGAACATCGAGTTTGCGCTGAAGTCTCTCACCGGTGCTTCCGGGAATGCATCTGGCTTGCCTGGTACTTCATTTTCCT
i manLeu1.NW_012102332v1    I 15 C 0
s colAng1.NW_012115278v1       516247 251 -   4457520 TGTGGAGTCCACTCACCCTTCGAGCCCAGGATTTGAAGACTGCAGCTCCAGTGAGGCCACCACGCCTGTCGCCGTGCAGCACATCCGCCCGGCCAGAGTGAAGAGGCGCAAGCAGTCTCCCGTTCCTGCCCTGCCCATTGTGGTGCAGCTCATGGAGATGGGATTTCCCCGAAGGAACATCGAGTTTGCGCTGAAGTCGCTCACTGGTGCTTCCGGGAATGCATCCGGCTTGCCTGGTACTTCACTTTCCT
i colAng1.NW_012115278v1    I 15 C 0
s calJac3.chr6              154549781 251 - 158406734 TGTGGAGTCCACCCACCCTTCGAGCCCAGGATTTGAAGACTGCAGCTCCAGTGAGGCCACCACGCCTGTTGCCGTGCAGCACATCCGGCCTGCCAGAGTGAAGAGGCGCAAGCAGTCTCCCGTTCCTGCCCTGCCTATCGTGGTGCAGCTCATGGAAATGGGATTTCCCAGAAGGAACATCGAGTTTGCGCTGAAGTCTCTCACTGGTGCTTCCGGGAATGCATCTGGTTTGCCTGGTACTTGGTTTTCCT
i calJac3.chr6              I 15 C 0
s saiBol1.JH378292             380106 251 -   2682657 TGTGGAGTCCACCCACCCTTCGAGCCCAGGATTTGAAGACTGCAGCTCCAGTGAGGCCACCACGCCTGTCGCTGTGCAGCACATCCGGCCTGCCAGAGTGAAGAGGCGCAAGCCGTCGCCCGTTCCTGCCCTGCCGATCGTGGTGCAGCTCATGGAAATGGGATTTCCCAGGAGGAACATCGAGTTTGCGCTGAAGTCTCTCACGGGTGCTTCCGGGAATGCATCTGGTTTGCCTGGTACGTGGTTTTCCT
i saiBol1.JH378292          I 15 C 0
s cebCap1.NW_016107707v1       405813 251 -   2086007 TGTGGAGTCCACCCACCCTTCGAGCCCAGGTTTTGAAGACTGCAGCTCCAGTGAGGCCACCACGCCTGTCGCCGTGCAGCACATCCGGCCTGCTAGAGTGAAGAGGCGCAAGCAGTCGCCTGTTCCTGCCCTGCCTATCGTGGTGCAGCTCATGGAAATGGGATTTCCCAGAAGGAACATCGAGTTTGCACTGAAGTCTCTCACTGGTGCTTCCGGGAATGCATCTGGTTTGCCTGGTACTTGGTTTTCCT
i cebCap1.NW_016107707v1    I 15 C 0
s aotNan1.NW_018503298v1       466438 251 +   3831555 TGTGGAGTCCACCCACCCTTCGAGCCCAGGATTCGAAGACTGCAGCTCCAGTGAGGCCACCACGCCTGTCGCCGTGCAGCACATCCGGCCTGCCAGAGTGAAGAGGCGCAAGCAGTCGCCCGTTCCTGCCCTGCCTATCGTGGTGCAGCTCATGGAAATGGGATTTCCCAGAAGGAACATCGAGTTTGCACTGAAGTCTCTCACTGGTGCTTCCGGGAATGCATCTGGTTTGCCTGGTACTTGGTTTTCCT
i aotNan1.NW_018503298v1    I 15 C 0
s proCoq1.NW_012148396v1     13536307 251 +  16154928 TGTGGAGTCCACTCACCCTTCAAGCCCAGGGTTTGAAGACTGCAGCTCCAGCGAGGCCACCACACCTGTCACCATGCAGCACATCCGCCCTGCCAGGGTGAAGAGGCGCAAGCAGTCGCCTGTTCCTGCTCTGCCTATTGTGGCACAACTCATGGAAATGGGATTTTCCCGAAGGAACATAGAGTTTGCACTGAAGTCACTCACTGGCGCTTCTGGGAATGCGTCTGGCTTGCCTGGTACTGTGTTTTCCT
i proCoq1.NW_012148396v1    I 179 C 0
s otoGar3.GL873689             488492 250 +   3845361 TGTGGAGTCCACTCACCCACTGAGCCCGGGTTTTGAAGACTGCAGCTCCAGTGAGGCCACCACGCCTGTGACCGTGCATAACATCCGCCCTGCCAGGGTCAAGCAGCGCAAGCAGCCTCCGGTTCCTGCTTTGCCGATTGTGGGGCAGCTCATGGAAATGGGTTTTCCCCGGAGGAACATCGAGTTTGCACTGAAGTCGCTCACGGGCGCCTCTGGGAATGCCTCGGGCCTGCCTGGTACTGTG-TTTCCT
i otoGar3.GL873689          I 15 C 0
s mm10.chr7                  56157322 250 + 145441459 TGTGGAATCCACACATCCTTCAAGTCCAGGGTGTGAAGACTGCAGCTCCAGTGAGGCCACAACCCCAGTCTCTGTACAGCACATCCATCTTGCCAGGGCGAAGAAGCGCAGACAGTCCCCAGCCCCTGCTCTGCCTATTGTAGTGCAGCTCATGGAAATGGGATTTCCAAGGAAAAATATAGAGTTTGCTCTGAAGTCGCTCACCGGCACCTCTGGGAATGCATCTGGTTTGCCTGGTATAAC-TTTTTCT
i mm10.chr7                 I 15 C 0
s canFam3.chr3               60064950 251 -  91889043 TGTTGAGTCTACTCATCCGTCGAGCCCAGTGTTTGAAGACTGCAGCTCCAGTGAGGCCACAACTCCTGTCCCTGTGCAGCATGTTCGCCCTGTCAGAGCGAAGAAGCGCAAACAGTCACCTGCCCCTGCTCTGCCTATTGTGGTTCAGCTCATGGAAATGGGATTTCCTAGAAGGAACATAGAGTTTGCGCTTAAGTCACTCCCTGGTGCCTCTGGGAATGCTGCTGGCTTGCCAGGTATATAATTTTCCT
i canFam3.chr3              I 15 C 0
s dasNov3.JH562051             447633 251 +    563711 CGTGGAGTCCACCCACCCATCGAGCCCTGTGTTTGAGGACTGCAGCTCCAGTGAGGCCACCACGCCAGTCCCAGTGCAGCACCTTCGCTCTGTCAGGGTGAAGAAGCACAAGCCGTCGCCTGTGCCTGCCCTGCCCATTGTGGTTCAGCTCATGGAAATGGGATTTCCCAGGAGGAACATAGAGTTTGCACTGAAGTCGCTCACTGGAGCTTCTGGGAACGCATCTGGGATGCCTGGTATTGCCTTTTCCT
i dasNov3.JH562051          I 15 I 111
e panTro5.chr15               9611979 100 +  83230942 I

a score=94437.000000
s hg38.chr15_KI270851v1_alt    217412 13 +    263054 GGCCTCTGCTTGT--------
s panPan2.chr15              74137800 13 -  99763055 GGCCTCTGCTTGT--------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182369 13 -    281578 GGCCTCTGCTCGT--------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045147 13 + 121039945 GGCCTCTGCTTGC--------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164353448 13 - 169600520 GGCCTCTGCTTGC--------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165674744 13 - 171882078 GGCCTCTGCTTGC--------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       527837 13 +   2379783 GGCCTCTGCTTGC--------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       486052 13 +   4116138 GGCCTCTGCTTGC--------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53916840 13 +  58131712 GGCCTCTGCTTGG--------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       538477 13 -   3636681 GGCCTCTGCTTGC--------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       516498 13 -   4457520 GGCCTCTGCTTGC--------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154550032 13 - 158406734 GGTCTCTGTTTGT--------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             380357  9 -   2682657 GGTCTC----TGT--------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       406064 13 -   2086007 GGTCTCTGTTTGT--------
i cebCap1.NW_016107707v1    C 0 M 2126
s aotNan1.NW_018503298v1       466689 13 +   3831555 GGTCTCTGCTTGT--------
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13536558 13 +  16154928 TGTCAGTGCTTGT--------
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             488742 13 +   3845361 CACCAGCGTGCGT--------
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56157572 13 + 145441459 TGTCCATGCTTGC--------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60065201 21 -  91889043 TGTGGGTGCTTCACTCAGTGT
i canFam3.chr3              C 0 C 0
e dasNov3.JH562051             447884 111 +    563711 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=215020.000000
s hg38.chr15_KI270851v1_alt    217425 29 +    263054 ----------ACGTGTGTGGGTTCCCGCTTCAGGGCTGT-------------------------------
s panPan2.chr15              74137813 29 -  99763055 ----------ACGTGTGTGGGTTCCCGCTTCAGGGCTGT-------------------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182382 29 -    281578 ----------GTATGTGTGGGTTCCTGCTTCAGAGCTGT-------------------------------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045160 29 + 121039945 ----------ATGTGTGTGGGTTCCCGCTTCAGGGCTGT-------------------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164353461 29 - 169600520 ----------GTGTGTGTGGGTTCCCGCTTCAGGGCTGT-------------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165674757 29 - 171882078 ----------GTGTGTGTGGGTTCCCGCTTCAGGGCTGT-------------------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       527850 29 +   2379783 ----------GTGTGTGTGGGTTCCCGCTTCAGGGCTGT-------------------------------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       486065 29 +   4116138 ----------GTGTGTGTGGGTTCCTGCTTCAGGGCTAC-------------------------------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53916853 29 +  58131712 ----------GTGTGTGTGGGTTCCTGCTTCAGGGCTGT-------------------------------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       538490 29 -   3636681 ----------GTGTGTGTGGGTTCCTGCTTCAGGGCTAC-------------------------------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       516511 29 -   4457520 ----------GTGTGTGTGGGTTCCTGCTTCAGGGCTGT-------------------------------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154550045 29 - 158406734 ----------GTGCCGGTGGGTTCCTGCTTCAGTGCTGT-------------------------------
i calJac3.chr6              C 0 I 1
s saiBol1.JH378292             380366 29 -   2682657 ----------GTGCATGTGGGTTCCCACTTCAGTGCTGT-------------------------------
i saiBol1.JH378292          C 0 I 1
s aotNan1.NW_018503298v1       466702 29 +   3831555 ----------GTGCATGTGGGTTCCTGCTTCAGTGCTGT-------------------------------
i aotNan1.NW_018503298v1    C 0 I 860
s proCoq1.NW_012148396v1     13536571 29 +  16154928 ----------TTGTCTGTGGGTCTACATTTCAGTGCTAT-------------------------------
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             488755 27 +   3845361 ----------TGGTGTG-GGGTTCACGTTTCAG-GCTGG-------------------------------
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56157585 27 + 145441459 ----------TTGCTTGTGGGTTTGACATT--GTGCTAT-------------------------------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60065222 70 -  91889043 GCCCACACATTAGTTTGTAGATTTACCTTGAAATGCTAATGTCAGCAGCCTGCAGGCAGGCTGGTACTGT
i canFam3.chr3              C 0 C 0
e dasNov3.JH562051             447884 111 +    563711 I
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=1093.000000
s hg38.chr15_KI270851v1_alt    217454 3 +    263054 TGA-
s panPan2.chr15              74137842 3 -  99763055 TGA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182411 3 -    281578 TGA-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045189 3 + 121039945 TGA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164353490 3 - 169600520 TGG-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165674786 3 - 171882078 TGG-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       527879 3 +   2379783 TGG-
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       486094 3 +   4116138 TGG-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53916882 3 +  58131712 TGG-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       538519 3 -   3636681 TGG-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       516540 3 -   4457520 TGG-
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154550075 2 - 158406734 GG--
i calJac3.chr6              I 1 C 0
s saiBol1.JH378292             380396 2 -   2682657 TG--
i saiBol1.JH378292          I 1 I 1143
s proCoq1.NW_012148396v1     13536600 3 +  16154928 TGG-
i proCoq1.NW_012148396v1    C 0 I 2
s otoGar3.GL873689             488782 3 +   3845361 GAA-
i otoGar3.GL873689          C 0 I 2
s mm10.chr7                  56157612 3 + 145441459 TGG-
i mm10.chr7                 C 0 I 1
s canFam3.chr3               60065292 3 -  91889043 -GGA
i canFam3.chr3              C 0 C 0
e dasNov3.JH562051             447884 111 +    563711 I
e aotNan1.NW_018503298v1       466731 860 +   3831555 I
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=20777.000000
s hg38.chr15_KI270851v1_alt    217457 3 +    263054 --CTC
s panPan2.chr15              74137845 3 -  99763055 --CTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182414 3 -    281578 --CTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045192 3 + 121039945 --CTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164353493 3 - 169600520 --TTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165674789 3 - 171882078 --TTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       527882 3 +   2379783 --TTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       486097 3 +   4116138 --TTC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53916885 3 +  58131712 --TTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       538522 3 -   3636681 --TTC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       516543 3 -   4457520 --CTC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154550077 3 - 158406734 --CTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             381541 3 -   2682657 --CTC
i saiBol1.JH378292          I 1143 C 0
s proCoq1.NW_012148396v1     13536605 3 +  16154928 --CTC
i proCoq1.NW_012148396v1    I 2 C 0
s otoGar3.GL873689             488787 3 +   3845361 --TTC
i otoGar3.GL873689          I 2 C 0
s mm10.chr7                  56157616 2 + 145441459 --CT-
i mm10.chr7                 I 1 C 0
s canFam3.chr3               60065295 5 -  91889043 TCCTC
i canFam3.chr3              C 0 C 0
e dasNov3.JH562051             447884 111 +    563711 I
e aotNan1.NW_018503298v1       466731 860 +   3831555 I
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=54610.000000
s hg38.chr15_KI270851v1_alt    217460 8 +    263054 ACAGTGGC
s panPan2.chr15              74137848 8 -  99763055 ACAGTGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182417 8 -    281578 ACAGTGGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045195 8 + 121039945 ACGGTGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164353496 8 - 169600520 ACAGTAGC
i rheMac8.chr7              C 0 I 3
s macFas5.chr7              165674792 8 - 171882078 ACAGTAGC
i macFas5.chr7              C 0 I 3
s macNem1.NW_012011934v1       527885 8 +   2379783 ACAGTAGC
i macNem1.NW_012011934v1    C 0 I 3
s cerAty1.NW_012001462v1       486100 8 +   4116138 ACAGTAGC
i cerAty1.NW_012001462v1    C 0 I 3
s chlSab2.chr26              53916888 8 +  58131712 ACAGTAGC
i chlSab2.chr26             C 0 I 3
s manLeu1.NW_012102332v1       538525 8 -   3636681 ACAGTAGC
i manLeu1.NW_012102332v1    C 0 I 3
s colAng1.NW_012115278v1       516546 8 -   4457520 ACGGTGGC
i colAng1.NW_012115278v1    C 0 I 3
s calJac3.chr6              154550080 8 - 158406734 ACGGCAAC
i calJac3.chr6              C 0 I 655
s saiBol1.JH378292             381544 8 -   2682657 ACGGCGGC
i saiBol1.JH378292          C 0 I 3
s proCoq1.NW_012148396v1     13536608 8 +  16154928 ACAGTGGC
i proCoq1.NW_012148396v1    C 0 I 3
s otoGar3.GL873689             488790 7 +   3845361 AC-GTGGC
i otoGar3.GL873689          C 0 I 3
s canFam3.chr3               60065300 4 -  91889043 ACTG----
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             447995 8 +    563711 ACAGATGC
i dasNov3.JH562051          I 111 C 0
e mm10.chr7                  56157618 0 + 145441459 C
e aotNan1.NW_018503298v1       466731 860 +   3831555 I
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=2255568.000000
s hg38.chr15_KI270851v1_alt    217468 172 +    263054 TGGTGT--GC----TGTGTGTGCCT-CTCTTAGGTGTGGAAGCCTTGGTCGGGTGGCTGCTGGACCACTCCGACATACAGGTCACGGAGCTCTCAGATGCAGACACGGTGTCCGACGAGTATTCTGACGAGGAGGTGGTGGAGGACATGGATGATGCC------------------GCCTACTCCATGGTCAGTGCC
s panPan2.chr15              74137856 172 -  99763055 CGGTGT--GC----TGTGTGTGCCT-CTCTTAGGTGTGGAAGCCTTGGTCGGGTGGCTGCTGGACCACTCCGACATACAGGTCACGGAGCTCTCAGATGCAGACACAGTGTCCGACGAGTATTCTGATGAGGAGGTGGTGGAGGACATGGATGATGCC------------------GCCTACTCCATGGTCAGTGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182425 172 -    281578 TGGTGT--GC----TGTGTGTGCCT-CTCTTAGGTGTGGAAGCCTTGGTCGGGTGGCTGCTGGACCACTCTGACATACAGGTCACGGAGCTCTCAGATGCAGACACAGTGTCCGATGAGTATTCTGACGAGGAGGTGGTGGAGGACATGGATGATGCC------------------GCCTACTCCATGGTCAGTGCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045203 172 + 121039945 TGGTGT--GC----TGTGTGTGCCT-CTCTTAGGTGTGGAAGCCTTGGTCGGGTGGCTGCTGGACCACTCTGACGTCCAGGTCACGGAGCTCTCGGATGCAGACACAGTGTCTGACGAGTATTCTGACGAGGAGGTGGTGGAGGACATGGATGATGCC------------------GCCTACTCCACGGTCAGTGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164353507 172 - 169600520 TGGTGG--GC----TGTGTGTGCTT-CTCTTAGGTGTGGAAGCCTTGGTCGGGTGGCTGCTGGACCACTCCGACGTCCAGGTCACGGAGCTCTCGGATGCAGACACAGTGTCCGACGAGTATTCTGATGAGGAGGTGGTGGAGGACATGGACGATGCT------------------GCCTACTCCATGGTCAGTGCC
i rheMac8.chr7              I 3 C 0
s macFas5.chr7              165674803 172 - 171882078 TGGTGG--GC----TGTGTGTGCTT-CTCTTAGGTGTGGAAGCCTTGGTCGGGTGGCTGCTGGACCACTCCGACGTCCAGGTCACGGAGCTCTCGGATGCAGACACAGTGTCCGACGAGTATTCTGATGAGGAGGTGGTGGAGGACATGGACGATGCT------------------GCCTACTCCATGGTCAGTGCC
i macFas5.chr7              I 3 C 0
s macNem1.NW_012011934v1       527896 172 +   2379783 TGGTGG--GC----TGTGTGTGCTT-CTCTTAGGTGTGGAAGCCTTGGTCGGGTGGCTGCTGGACCACTCCGACGTCCAGGTCACGGAGCTCTCGGATGCAGACACAGTGTCCGACGAGTATTCTGATGAGGAGGTGGTGGAGGACATGGACGATGCT------------------GCCTACTCCATGGTCAGTGCC
i macNem1.NW_012011934v1    I 3 C 0
s cerAty1.NW_012001462v1       486111 172 +   4116138 TGGTGG--GC----TGTGTGTGCTT-CTCTTAGGTGTGGAAGCCTTGGTCGGGTGGCTGCTGGACCACTCCGACGTCCAGGTCACGGAGCTCTCGGATGCAGACACAGTGTCCGACGAGTATTCTGATGAGGAGGTGGTGGAGGACATGGACGATGCT------------------GCCTACTCCATGGTCAGTGCC
i cerAty1.NW_012001462v1    I 3 C 0
s chlSab2.chr26              53916899 172 +  58131712 TGGTGG--GC----TGTGTGTGCTT-CTCTTAGGTGTGGAAGCCTTGGTCGGGTGGCTGCTGGACCACTCCGACGTCCAGGTCACGGAGCTCTCGGATGCAGACACAGTGTCCGACGAGTATTCTGATGAGGAGGTGGTGGAGGACATGGATGATGCT------------------GCCTACTCCATGGTCAGTGCC
i chlSab2.chr26             I 3 C 0
s manLeu1.NW_012102332v1       538536 172 -   3636681 TGGTGG--AC----TGTGTGTGCTT-CTCTTAGGTGTGGAAGCCTTGGTCGGGTGGCTGCTGGACCACTCCGACGTCCAGGTCACGGAGCTCTCGGATGCAGACACAGTGTCCGACGAGTATTCTGATGAGGAGGTGGTGGAGGACATGGACGATGCT------------------GCCTACTCCATGGTCAGTGCC
i manLeu1.NW_012102332v1    I 3 C 0
s colAng1.NW_012115278v1       516557 172 -   4457520 TGGTGG--GC----TGTGTGTGCTT-CTCTTAGGTGTGGAAGCCTTGGTCGGGTGGCTGCTGGACCACTCCGACGCCCAGGTCACGGAGCTCTCGGATGCAGACACGGTGTCCGACGAGTATTCTGATGAGGAGGTGGTGGAGGACATGGATGATGCT------------------GCCTACTCCATGGTCAGTGCC
i colAng1.NW_012115278v1    I 3 C 0
s calJac3.chr6              154550743 190 - 158406734 TGGTGT--GC----TCTGTGTGCTT-CTCTTAGGTGTGGAAGCCTTGGTGGGGTGGCTGCTGGACCACTCAGACGTCCAGGTCACGGAGCTCTCGGATGTAGACACAGTGTCTGACGAGTACTCTGACGAGGAGGTGATGGAGGACGTGGACGACGCAGCCTACGCTGCGGTCAGTGCCTACGCTGTGGTCAGTGCC
i calJac3.chr6              I 655 C 0
s saiBol1.JH378292             381555 172 -   2682657 CGGTGT--GC----TGTGTGTGCTT-CTCTTAGGTGTGGAAGCCTTGGTGGGGTGGCTGCTGGACCACTCCGACGTCCAGGTCACGGAGCTCTCGGATGTAGACACGGTGTCTGACGAGTATTCTGACGAGGAGGTGATGGAGGACATGGATGACGCA------------------GCCTACCCTGTGGTCAGTGCC
i saiBol1.JH378292          I 3 C 0
s aotNan1.NW_018503298v1       467591 172 +   3831555 TGGTGT--GC----TGTGTGTGCTT-CTCTTAGGTGTGGAAACCTTGGTGGGGTGGCTGCTAGACCACTCGGACGTCCAGGTCACAGAGCTCTCGGATGGAGACACAGTGTCGGACGAGTATTCTGACGAAGAGGTGATGGAGGACATGGATGACGCG------------------GCCTACCCTGTGGTCAGTGCC
i aotNan1.NW_018503298v1    I 860 C 0
s proCoq1.NW_012148396v1     13536619 173 +  16154928 TGGTGT--GC----TGTGTGTGCTTGCTCTTAGGGGTGGAAGCCTTGGTTGGGTGGCTGCTGGACCACTCCGATGTGCAGGTCACAGAGCTCTCGGACGCAGACACAGTGTCTGACGAGTATTCAGATGAGGAGGTGGTGGAAGATGTGGACGACGCA------------------GCCTACTCTGTGGTCAGTGCC
i proCoq1.NW_012148396v1    I 3 I 163
s otoGar3.GL873689             488800 177 +   3845361 TGGTGT--GCCACATGTGTGTGCTTGTTCTTAGGTGTGGAAGCCTTGGTCGGGTGGCTGCTAGATCACTCTGATGTCCAAGTCACGGAGCTGTCGGACGCAGACACTGCATCTGACGAGTACTCAGATGAGGAGGGTGTGGAAGATCTGGACGACACA------------------GCCTACCCTGTGGTCAGTGCC
i otoGar3.GL873689          I 3 C 0
s mm10.chr7                  56157618 175 + 145441459 TGATGCCAGC----TGAGTGTTTTTGCTCCTAGGTGTGGAAGCCTTGGTTGGGTGGCTGCTAGACCACTCTGATGTCCAGGTTACAGAGTTCTCGGATGCAGAAACACTATCTGACGAGTATTCAGACGAGGAGGTGGTAGAAGATGTGGATGATACC------------------CCTTACCCTGTGGTCAGTAGC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60065304 172 -  91889043 -AGTGC--AC----TGTGTGTGCTTGCTTGTAGGAGTGGAGGCCTTGGTTGGGTGGCTGCTGGACCATGCTGATGCGCAGGTCACAGATCTCTCGGATGCAGACACAGGGTCTGAAGAATGTTCAGATGAGGAGGTGGTGGAGGATGTGGACGATGTA------------------GCCTACGCTGTGGTCAGTGCC
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             448003 166 +    563711 ---------T----TGTGTGGGTTCACTCCCAGGTATCGAGGCTCTGGTTGGGTGGCTTCTGGACCACTCTGACGTCCAGATCACGGACCTCTCGGATGCAGACACTGTGTCTGATGAGTATTCGGATGAGGAGCTGGTGGAGGATACGGATGAGGCT------------------TCTTACCCTGTGGTCAGTATC
i dasNov3.JH562051          C 0 C 0
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=1090630.000000
s hg38.chr15_KI270851v1_alt    217640 163 +    263054 TCCCATG-TGAC-CGCCCGCAC-CTGGGCCGCTGTCCGTCTAGCGCTCTAACAGTCTTACACCTTGGCTTTCTCTGTCCCTTGAAAGAATTAAC--TATATCTA--C--TGTGGACTGTTTCATAAAACCAACCTATGGTGTTGCCGGGCACAGAACAAAGC-----------------------TG--TGTTTCAC
s panPan2.chr15              74138028 163 -  99763055 TCCCATG-TGAC-CGCCCGCAC-CTGGGCCGCTGTCCGTCTAGCGCTCTAACAGTCTTACACCTTGGCTTTCTCTGTCCCTTGAAAGAATTAAC--TATATCTA--C--TGTGGACTGTTTCATAAAACCAACCTATGGTATTGCCGGGCACAGAACAAAGC-----------------------TG--TGTTTCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182597 186 -    281578 TCCCATG-TGAC-CGCCCGCAC-CTGGGTCGCTGTCCGTCTAGTGCTCTAACAGTCTGACACCTTGGCTTTCTCTGTCCCTTGAAAGAATTAAC--TATATCTA--C--TGTGGACTGTTTCATAAAACTAACCTATGGTATTGCCGGGCACAGAGCAAAGCTGTGTTTCACTGCTGAAGGGATGTG--TGTTTCAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045375 163 + 121039945 TCCTGTG-TGAC-CGCCCGCAC-CTGGGCCGCTGTCTGTCTAGCGCTCTGACAGTCTTACACCTTGGCTTTCTCTGTCCCTTGTAAGAACTAAC--TTTATCTA--C--TGTGGACTGTTCCATAAAACCAACCTATGGTATTGCTGGGCACGGAACAAAGC-----------------------TG--TGTTTCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164353679 163 - 169600520 TCCTGTG-TGAC-CGCCTGCAC-CTGGGCCGCTGTCTGTCTCGCGCTCTGACAATCTTACACCTTGGCTTTCTCTGTCTCTTGAAAGAACTAAC--TGTACCTA--C--TGTGGACTGTTTCATAAAACCAACTTATGGTATTGCCGGGCACAGGACAAAGC-----------------------TG--TGTTTTAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165674975 163 - 171882078 TCCTGTG-TGAC-CGCCTGCAC-CTGGGCCGCTGTCTGTCTCGCGCTCTGACAATCTTACACCTTGGCTTTCTCTGTCTCTTGAAAGAACTAAC--TGTACCTA--C--TGTGGACTGTTTCATAAAACCAACTTACGGTATTGCCGGGCACAGGACAAAGC-----------------------TG--TGTTTCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       528068 163 +   2379783 TCCTGTG-TGAC-CGCCTGCAC-CTGGGCCGCTGTCTGTCTCGCGCTCTGACAATCTTACACCTTGACTTTCTCTGTCTCTTGAAAGAACTAGC--TGTACCTA--C--TGTGGACTGTTTCATAAAACCAACTTATGGTATTGCCGGGCACAGGACAAAGC-----------------------TG--TGTTTCAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       486283 163 +   4116138 TCCTGTG-TGAC-CGCCTGCCC-CTGGGCCGCTGTCTGTCTCGCGCTCTGACAATCTTACACCTTGGCTTTCTCTGTCTCTTGAAAGAACTAAC--TGTACCTA--C--TGTGGACTGTTTCATAAAACCAACTTATGGTATTGCCGGGCACAGGACAAAGC-----------------------TG--TGTTTCAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53917071 163 +  58131712 TCCTGTG-TGAC-CGCCTGCAC-CTGGGCCGCTGTCTGTCTCGTGCTCTGACAATCTTACACCTTGGCTTTCTCTGTCTCTTGAAAGAACTAAC--TGTACCTA--C--TGTGGACTGTTTCATAAAACCAACTTATGGTATTGCCGGGCACAGGACAAAGC-----------------------TG--TGTTTCAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       538708 163 -   3636681 TCCTGTG-TGAC-CGCCTGCAC-CTGGGCCGCTGTCTGTCTCGCGCTCTGACAGTCTTACACCTTGGCTTTCTCTGTCTCTTGAAAGAACTAAC--TGTACCTA--C--TGTGGACTGTTTCATAAAACCAACTTATGGTATTGCCGGGCACAGGACAAAGC-----------------------TG--TGTTTCAC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       516729 165 -   4457520 TCCTGTG-TGAC-CGCCTGCAC-CTGGGCCGCTGTCTGTCTCGCGCTCTCACAATCTTACACCTTGGCTTTCTCTGTCCCTTGAAAGAACTAAC--TGTATCTA--CTGTGTGGACTGTTTCATAAAACCGACCTATGGTATTGCCGGGCACAGGACAAAGC-----------------------TG--TGTTTCAC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154550933 142 - 158406734 TTCCCTG-TGGC-TGCCCCTGC-ATGCGCCGCCCTCTGTCTA--GCTCTGACAGTCTTGCACCTTGGCTTTCTCTGTACCTTGAAGGAATTGAC--TGTATCTA--C--T-------------------CAACCTATGGTATTCCTGGGCACAGAACAAAGA-----------------------TG--TGTTTTAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             381727 144 -   2682657 TTCCGTG-TGAC-TGCCCACAC-ATGGGCTGCCCTCTGTCTAGTGCTCTGACAGTCTTGCACCCTGGCTTTCTCTGTACCTTGAAGGAACTAAC--TGTATCTA--C--T-------------------CAACCTATGGTATTCCTGGGCACAGAACAAAGA-----------------------TG--TGTTTCAC
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       467763 143 +   3831555 TT-CGTG-TGAC-TGCCCGTAC-GTGGGCTGCCCTCTGTCTAGCTCTGTGACAGTCTTGCACCTTGGCTTTCTCTGTACCTTGAAGGAACTAAC--TCTATCCA--C--T-------------------CAACCTGTGGTATTCCTGGGCACAGAACAAAGA-----------------------TG--TGTTTTAC
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             488977 138 +   3845361 --CCCCA-TGACTTGCCTGCAC-CCTGACTTGCTCCCGCTGTGTGCCATAACTGTCCTGTGTGCTCCCCTCCTCTGTCCCTGGA-------------GTCCCTAAGC--T-----------------ACTTACGTGCAGCTCTGTTGGCTACAGGACAAAGC-----------------------TGTCTGTTTTAA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56157793 134 + 145441459 TTCCACG-TGTC-------------------CTGTCTGTCTTATACGATGAT--TCTTCTATACTACTTCTTCCCATCTCTTAAAAGAAC----------------C--AGTGAACTTTTCTATGAGATTTACCCACAGTTCTGCCAGACACATAGCAAAGT-----------------------TACCTGTTTTGC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60065476 109 -  91889043 TCCTGTG-TGGT-TGCC-----------CCACTGCCTGTGTCAACCT------GTCCTATGCTCTGGGTTTC----------------------------------C--TGCATGCTGTTCCATGGGGCCTCTCTGCAGTTCAGCTGTGCATGTAGTGAACC-----------------------TG----------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             448169 137 +    563711 TTCAGAGCTAAT-AACCTGCCCGGTGTCTTGTTGCCTATATT---CTTTCACTCTTTTGTATGTTAGC-TTCTCTGTCCCTTGAAAGAACCAACCATCTCTCTA--C--TG--------------------------GGTCCTGCTGGGCACATAATAGTTC-----------------------TT--TGTTTTAT
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13536792 163 +  16154928 I
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=980312.000000
s hg38.chr15_KI270851v1_alt    217803  95 +    263054 TACTGAAGGGAT--GATTGGG-TTTCTATAT----------CATAATTACTTTTAGCTTCAGAACAGACCCTTGTTCAAACATCTCATGATCTTCGGTAGCCATTAGA
s panPan2.chr15              74138191  95 -  99763055 TACTGAAGGGAT--GATTGGG-TTTCTATAT----------CATCATTACTTTTAGCTTCAGAACAGACCCTTGTTCAAACATCTCATGATCTTCGGTAGCCATTAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182783  95 -    281578 TACTGAAGGGAT--GATTGGG-TTTCTATAT----------CATAATTACTTTTAGCTTTAGAACAGACCCTTGTTCAAACATCTAATGATCTTTAGTAGCCATTAGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045538  95 + 121039945 TACTGAAGAGAT--GATTGGG-TTTCTATAT----------CATAATTATTTTTAGCTTTAGAACAGACCCTTGTTCAAACATCTAATGATCTTTGGTAGCCATTAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164353842  95 - 169600520 TCTTGAAGACGT--GATTGGG-TTTCTATAT----------CATAATTACTTTTAGCTTTAGAACAGACCCTTGTTCAAACATCTAATGATCTTCAGTAGCCATTAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165675138  95 - 171882078 TCTTGAAGATGT--GATTGGG-TTTCTATAT----------CATAATTACTTTTAGCTTTAGAACAGACCCTTGTTCAAACATCTAATGATCTTCAGTAGCCATTAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       528231  95 +   2379783 TCTTGAAGACGT--GATTGGG-TTTCTATAT----------CATAATTACTTTTAGCTTTAGAACAGACCCTTGTTCAAACATCTAATGATCTTCAGTAGCCATTAGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       486446  95 +   4116138 TCTTGAAGACGT--GATTAGG-TTTCTATAT----------CATAATTACTTTTAGCTTTAGAACAGACCCTTGTTCAAACATCTAATGATCTTCAGTAGCCATTAGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53917234  95 +  58131712 TCTTGAAGACGT--GATTGGG-TTTCTATAT----------CATAATTACTTTTAGCTTTAGAACAGACCCTTGTTCAAACATCTAATGATCTTCAGTAGCCATTAGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       538871  95 -   3636681 TCTTGAAGACGT--GATTGGG-TTTCTATAT----------CATAATTACTTTTAGCTTTAGAACAGACCCTTGTTCAAACATCTAATGATCTTCAGTAGCCATTAGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       516894  95 -   4457520 TCTTGAAGACGT--GATTGGG-TTTCTATAT----------CATGATTACTTGTAGCTTTAGAACAGACCCTTGTTCAAACAGCTAATGATCTTCGGTAGCCATTAGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551075  97 - 158406734 TACTGAAGAGATAGAGTTGGG-TTTCTCTAT----------CGTAATTACTTTTAGCTTTAAAACAGACCCTTGTTGGAACATCTAATGACCTTCAGTAGCCATTAGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             381871  95 -   2682657 TACTCAAGAGAT--GATTGGG-TATCTCTAT----------CGTAATTACTTTTAGCTTTAAAACAGACCCTTGTTGAAACATCTAATGTTCTTCAGTAGCCATTAGA
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       467906 105 +   3831555 TACTGAAGAGAT--GCTTGGG-TTTCTCTATTGTTAATTACTGTAATTACTTTTAGCTTTAAAACAGACCCTTGTTGAAACATCTAATGATCTTCAGTAGCCATTAGA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13536955  96 +  16154928 TACTGAAGTGAT--AATTGGGTTTTCTATAT----------CAAAATTACTATTAGATTTAAAACAGATCCTTGCTCAAATACCTAGTGATGTTGGGTAGCCATTAGA
i proCoq1.NW_012148396v1    I 163 I 311
s otoGar3.GL873689             489115  96 +   3845361 CACTGAAGTGAT--GATTGGGTTTTCTATAT----------CAAAATTACTGTTAGGTTCAAAACAGACTCTTGCTCAAATATCTGATGATGTTGGGTAGTCTCTAGA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56157927  93 + 145441459 ---TGCTGAGAT--AATTAGCTTTTCTCCGT----------TAAAATTTCTCTCAGTTTTTAAATAAACCATTGTATAGCAATCTAGTGATGTTGGGTAGTTTTTAGA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60065585  85 -  91889043 ---CTAAGTGCT--AACTGGGTTTTCTGTGC----------CTTAATTACT-TTAGTTTCAAAGCAGACCCTTGTTCCAACATCTAGTGATGTTGGGTAGA-------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             448306  86 +    563711 TATTGAAGTGGT--TACTGAG-TAT-----T----------TCTTATTATTTTTTGCTTAAAAAAG----TTTGTCTAAACAATTAATGATTTTGAGTAGCCATTAGA
i dasNov3.JH562051          C 0 C 0
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=11849.000000
s hg38.chr15_KI270851v1_alt    217898 1 +    263054 G
s panPan2.chr15              74138286 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182878 1 -    281578 A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045633 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164353937 1 - 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165675233 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       528326 1 +   2379783 A
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       486541 1 +   4116138 A
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53917329 1 +  58131712 A
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       538966 1 -   3636681 A
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       516989 1 -   4457520 A
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551172 1 - 158406734 A
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             381966 1 -   2682657 A
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       468011 1 +   3831555 A
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             489211 1 +   3845361 A
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56158020 1 + 145441459 A
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60065670 1 -  91889043 A
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             448392 1 +    563711 A
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13537051 311 +  16154928 I
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=78158.000000
s hg38.chr15_KI270851v1_alt    217899 6 +    263054 GATATT
s panPan2.chr15              74138287 6 -  99763055 GATATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182879 6 -    281578 GATATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045634 6 + 121039945 GATATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164353938 6 - 169600520 GATATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165675234 6 - 171882078 GATATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       528327 6 +   2379783 GATATT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       486542 6 +   4116138 GATATT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53917330 6 +  58131712 GATATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       538967 6 -   3636681 GATATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       516990 6 -   4457520 GATATT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551173 6 - 158406734 GATATT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             381967 6 -   2682657 GATATT
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       468012 6 +   3831555 GATATT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13537362 6 +  16154928 GATACT
i proCoq1.NW_012148396v1    I 311 C 0
s otoGar3.GL873689             489212 6 +   3845361 GATGTT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56158021 6 + 145441459 TATACT
i mm10.chr7                 C 0 I 370
s canFam3.chr3               60065671 6 -  91889043 TATACT
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             448393 6 +    563711 GATACT
i dasNov3.JH562051          C 0 C 0
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=12376.000000
s hg38.chr15_KI270851v1_alt    217905 1 +    263054 T
s panPan2.chr15              74138293 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182885 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045640 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164353944 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165675240 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       528333 1 +   2379783 T
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       486548 1 +   4116138 T
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53917336 1 +  58131712 T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       538973 1 -   3636681 T
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       516996 1 -   4457520 T
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551179 1 - 158406734 T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             381973 1 -   2682657 T
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       468018 1 +   3831555 T
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13537368 1 +  16154928 T
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             489218 1 +   3845361 T
i otoGar3.GL873689          C 0 I 302
s dasNov3.JH562051             448399 1 +    563711 T
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56158027 370 + 145441459 I
e canFam3.chr3               60065677 1 -  91889043 I
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=53618.000000
s hg38.chr15_KI270851v1_alt    217906 4 +    263054 TATT
s panPan2.chr15              74138294 4 -  99763055 TATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182886 4 -    281578 TATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045641 4 + 121039945 TATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164353945 4 - 169600520 TATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165675241 4 - 171882078 TATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       528334 4 +   2379783 TATT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       486549 4 +   4116138 TATT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53917337 4 +  58131712 TATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       538974 4 -   3636681 TATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       516997 4 -   4457520 TATT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551180 4 - 158406734 TACT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             381974 4 -   2682657 TATT
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       468019 4 +   3831555 TATT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13537369 4 +  16154928 TATT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             489521 4 +   3845361 TATT
i otoGar3.GL873689          I 302 C 0
s canFam3.chr3               60065678 4 -  91889043 TATT
i canFam3.chr3              I 1 C 0
s dasNov3.JH562051             448400 4 +    563711 TATT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56158027 370 + 145441459 I
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=652387.000000
s hg38.chr15_KI270851v1_alt    217910 60 +    263054 AAAATACCATGTTT----TGACACATCAGTTTCTGACCTGAGTAAATTGT-TCATAGGATTAATT
s panPan2.chr15              74138298 60 -  99763055 AAAATACCATGTTT----TGACACATCAGTTTCTGACCTGAGTAAATTGT-TCATAGGATTAATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182890 60 -    281578 AAAATACCATGTTT----TGACACATCAGTTTCTGACCTGAATAAATTGT-TCATAGGATTAATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045645 60 + 121039945 AAAATACCATGTTT----TGACACATCAGTTTCTGACCTGAGTAAATTGT-TCATAGGATTAATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164353949 60 - 169600520 AAAATACCATGTTT----TGACACATCAGTTTCTGACCCGAGTAAATTGT-TCATAGGAAAAATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165675245 60 - 171882078 AAAATACCATGTTT----TGACACATCAGTTTCTGACCCGAGTAAATTGT-TCATAGGATTAATT
i macFas5.chr7              C 0 I 408
s macNem1.NW_012011934v1       528338 60 +   2379783 AAAATACCATGTTT----TGACACATCAGTTTCTGACTCCAGTAAATTGT-TCATAGGATTAATT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       486553 60 +   4116138 AAAATACCATGTTT----TGACACATCAGTTTCTGACCCGAGTAAATTGT-TCGTAGGATTTGTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53917341 60 +  58131712 AAAATACCATGTTT----TGACACATCAGTTTCTGACCCGAGTAAATTGT-TCATAGGATTAATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       538978 60 -   3636681 AAAATACCATGTTT----TGACACATCAGTTTCTGACCCGAGCAAATTGT-TCATAGGATTAATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517001 60 -   4457520 AAAACACCATGTTT----TGACACATCAGTTTCTGACCTGAGTAAATTGT-TCATAGGATTAGTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551184 60 - 158406734 AAAATACCATGTTT----TGACACATTGATTTCTGATGTGAGTAGATTGT-TGATAGGATTAATT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             381978 60 -   2682657 AAAATACCATGTTT----TGACACATTGATTTCTGATGGGAGTAAATTGT-TCATAGGATTAATT
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       468023 60 +   3831555 AAAATACCATGTTT----TGACACATTGATTTCTGATGTGAGTAAATTGT-TCATAGGATTAGTT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13537373 65 +  16154928 AAAATATCATGTTTTGTGTGACACATTGATTTCTGACCTGAGTAAATTATCTCATAGGATTAATT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             489525 61 +   3845361 AAAATGTCATGTTTTGTGTG----TTTGATTTCTGACCTGAGTAAATTGTTTTATAGGATTAATT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56158397 65 + 145441459 AATAAATCATGTTTTATGTGACATATTGATTTGTGACCTGAGAAAATTGTTTTATAAAATTCTTA
i mm10.chr7                 I 370 C 0
s canFam3.chr3               60065682 65 -  91889043 TAAAAAACATGCTTTATATGACATAATGACTTCTAATTTAAGTAAATCATTTCATGGGATTAATG
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             448404 65 +    563711 TAAAACTCATCTTTGATATGACACATTGATTTCTGAAAGAAGTAAATTGTTTCATAAAATTATCT
i dasNov3.JH562051          C 0 C 0
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=359453.000000
s hg38.chr15_KI270851v1_alt    217970 47 +    263054 TGGAAGTGCCTTG-GAAATTT-TGTATACTTGTAGCTTTTGAGATTCAT
s panPan2.chr15              74138358 46 -  99763055 TGGAAGTGCCTTG-GAAATTT-TGTATACTTGTAGCTTTTGAGATTCA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182950 47 -    281578 TGGAAGTGCCTTG-GAAATTT-TGTATACTTGTAGCTTTTGAGATTCAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045705 47 + 121039945 TGGAAGTGCCTTA-GAAATTT-TGTATACTTGTAGCTTTTGAAATTCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164354009 46 - 169600520 TGGAAGTGTCTTGAGAAATTT-GTTATAC-TGTAGC-TTTGAGATCCAT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011934v1       528398 47 +   2379783 TGGAAGTGCCTTG-GAAATTT-TGTATACTTGTAGCTTTTGAGATCCAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       486613 47 +   4116138 TGGAAGTGCCTTG-GAAATTT-TGTATACTTGTAGCTTTTGAGATCCAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53917401 47 +  58131712 TGGAAGTGCCTTG-GAAATTT-TGTGTACTTGTAGCTTTTGAGATCCAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       539038 47 -   3636681 TGGAAGTGCCTTG-GAAATTT-TGTATACTTGTAGCTTTTGAGATCCAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517061 47 -   4457520 TGGAAGTGCCTTG-GAAATTT-TGTATCCTTGTAGCTTTTGAGATCCAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551244 28 - 158406734 TGGAAATGCCTTG-GAAA--------------------TTGAGATTCAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382038 47 -   2682657 TGGAAATGCCTTG-GAAATTT-TACATACTTACAGTTTTTGAGATTCAT
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       468083 47 +   3831555 TGGAAATGCCTTG-GAAATTT-TATATACTTACAGCTTTCGAGATTCAT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13537438 44 +  16154928 TGGAAATGCCTTG-AAAATCT----GTACTTGTAGCTTTTGAGATTCAT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             489586 43 +   3845361 TGGAAATGTCTCC-AAAATCT----GTTACTTCAAC-TTTGAGATTTGT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56158462 48 + 145441459 TTTTAGAGGCTTG-GAAATTTTTGGATATTGAGAACTGTTAAAATTCAT
i mm10.chr7                 C 0 I 537
s canFam3.chr3               60065747 44 -  91889043 TGGAAATGTCT---CAAATTT-TCTATAGTTGTATCTTTTTATATTCG-
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             448469 46 +    563711 TGGAAATGGCTTG-GAAATTT-TATAGACTTGTA-TTTTTGAGATTTGT
i dasNov3.JH562051          C 0 C 0
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I
e macFas5.chr7              165675305 408 - 171882078 I

a score=205685.000000
s hg38.chr15_KI270851v1_alt    218017 20 +    263054 TTCTGCCTACTATGCTACTG
s panPan2.chr15              74138404 20 -  99763055 TTCTGCCTACTATGCTACTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       182997 20 -    281578 TTCTGCCTACTATGCTACTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045752 20 + 121039945 TCCTGCCTACTATGCTACTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164354055 18 - 169600520 T--TGCCTACTATGCTACTG
i rheMac8.chr7              C 0 I 310
s macNem1.NW_012011934v1       528445 20 +   2379783 TTCTGCCTACTATGCTACTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       486660 20 +   4116138 TTCTGCCTACTATGCTACTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53917448 20 +  58131712 TTCTGCCTACTATGCTACTG
i chlSab2.chr26             C 0 I 305
s manLeu1.NW_012102332v1       539085 20 -   3636681 TTCTGCTTACTATGCTACTG
i manLeu1.NW_012102332v1    C 0 I 310
s colAng1.NW_012115278v1       517108 20 -   4457520 TTCTGCCTACTATGCTACTG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551272 20 - 158406734 TTCTGCCTGCTATGCTACTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382085 20 -   2682657 TTCTGCCTACCATGCTACTG
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       468130 20 +   3831555 TTCTGCCTACTGTGCTACTG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13537482 20 +  16154928 TTCTGCCTATTATGCTACTA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             489629 20 +   3845361 TTATTTTTCCCATGCTACTA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56159047 20 + 145441459 ttttGCATACTGTGCCATTG
i mm10.chr7                 I 537 C 0
s canFam3.chr3               60065791 15 -  91889043 TTCTGCTTACtatat-----
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             448515 20 +    563711 TTCTGTATACCATGCTACTG
i dasNov3.JH562051          C 0 C 0
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I
e macFas5.chr7              165675305 408 - 171882078 I

a score=26912.000000
s hg38.chr15_KI270851v1_alt    218037 3 +    263054 CTA
s panPan2.chr15              74138424 3 -  99763055 CTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183017 3 -    281578 CTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045772 3 + 121039945 CTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164354383 3 - 169600520 cTA
i rheMac8.chr7              I 310 C 0
s macFas5.chr7              165675713 3 - 171882078 cTA
i macFas5.chr7              I 408 C 0
s macNem1.NW_012011934v1       528465 3 +   2379783 CTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       486680 3 +   4116138 CTA
i cerAty1.NW_012001462v1    C 0 I 306
s chlSab2.chr26              53917773 3 +  58131712 cTA
i chlSab2.chr26             I 305 C 0
s manLeu1.NW_012102332v1       539415 3 -   3636681 cTA
i manLeu1.NW_012102332v1    I 310 C 0
s colAng1.NW_012115278v1       517128 3 -   4457520 CTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551292 3 - 158406734 GTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382105 3 -   2682657 GTG
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       468150 3 +   3831555 GTA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13537502 3 +  16154928 CTA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             489649 2 +   3845361 -TA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56159067 3 + 145441459 ATA
i mm10.chr7                 C 0 C 0
s dasNov3.JH562051             448535 3 +    563711 CTA
i dasNov3.JH562051          C 0 C 0
e canFam3.chr3               60065806 0 -  91889043 C
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=122621.000000
s hg38.chr15_KI270851v1_alt    218040 12 +    263054 TTAGTCTTTTTT
s panPan2.chr15              74138427 12 -  99763055 TTAGTCTTTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183020 12 -    281578 TTAGTCTTTTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045775 12 + 121039945 TTAGTCTTTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164354386 12 - 169600520 TTAGTCTTTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165675716 12 - 171882078 TTAGTCTTTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       528468 12 +   2379783 TTAGTCtttttt
i macNem1.NW_012011934v1    C 0 I 301
s cerAty1.NW_012001462v1       486989 12 +   4116138 TTAGTCTTTTTT
i cerAty1.NW_012001462v1    I 306 C 0
s chlSab2.chr26              53917776 12 +  58131712 TTAGTCTTTTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       539418 12 -   3636681 TTAGTCTTTTTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517131 12 -   4457520 TTAGTCTTTTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551295 12 - 158406734 TTAGTCTATTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382108 12 -   2682657 TTAGTCTTTTTT
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       468153 10 +   3831555 T--GTCTTTTTT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13537505 12 +  16154928 TTAGTCTTTTTT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             489651 12 +   3845361 CTAATCTTTTAT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56159070  7 + 145441459 TTAAGGT-----
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60065806 12 -  91889043 ttaatattttaa
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             448538 12 +    563711 TTACTCTTTTTT
i dasNov3.JH562051          C 0 C 0
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=205350.000000
s hg38.chr15_KI270851v1_alt    218052 17 +    263054 AAATGAAGATTTTTATA
s panPan2.chr15              74138439 17 -  99763055 AAATGAAGATTTTTATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183032 17 -    281578 AAATGAAGATTTTTATA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045787 17 + 121039945 ACATGAAGATTTTTATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164354398 17 - 169600520 AAATGAAGATCTTTATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165675728 17 - 171882078 AAATGAAGATCTTTATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       528781 17 +   2379783 AAATGAAGATCTCTTAT
i macNem1.NW_012011934v1    I 301 C 0
s cerAty1.NW_012001462v1       487001 17 +   4116138 AAATGAAGATCTTTATA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53917788 17 +  58131712 AAATGAAGATCTTTATA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       539430 17 -   3636681 AAATGAATATCTTTATA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517143 17 -   4457520 AAATGAAGATCTTTATA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551307 17 - 158406734 AAATGAAGATTTTTATA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382120 17 -   2682657 AAATGAAGATTTTTATC
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       468163 17 +   3831555 AAATGAAGATTTTTATA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13537517 17 +  16154928 AAATGAAGATTTTTATA
i proCoq1.NW_012148396v1    C 0 I 104
s otoGar3.GL873689             489663 17 +   3845361 AAATGAAGATTTTTATA
i otoGar3.GL873689          C 0 I 3
s mm10.chr7                  56159077 15 + 145441459 --AGAAAGATTTTTATA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60065818 14 -  91889043 aaatgaa---ttttata
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             448550 17 +    563711 AAATGAAGTTTTTTATA
i dasNov3.JH562051          C 0 C 0
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=146058.000000
s hg38.chr15_KI270851v1_alt    218069 17 +    263054 GAGAAAAT---AA-----AGGATTT
s panPan2.chr15              74138456 17 -  99763055 GAGAAAAT---AA-----AGGATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183049 17 -    281578 GAGAAAAT---AA-----AGGATTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045804 17 + 121039945 GGGAAAAT---AA-----AGGATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164354415 17 - 169600520 GGGAAAAT---AA-----AGGATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165675745 17 - 171882078 GGGAAAAT---AA-----GGGATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       528798 17 +   2379783 AGGAAAAT---AA-----GGGATTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       487018 17 +   4116138 GGGAAAAT---AA-----AGGATTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53917805 17 +  58131712 GGGAAAAT---AA-----AGGATTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       539447 17 -   3636681 GGGAAAAT---AA-----AGGATTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517160 17 -   4457520 GGGAAAAT---AA-----AGGCTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551324 17 - 158406734 GGGAAACT---AA-----AGGGTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382137 17 -   2682657 GGGAAACT---AA-----AGGATTT
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       468180 17 +   3831555 GGGAAACT---AA-----ACAATTT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             489683 17 +   3845361 TGAAATAT---AT-----AGTATTT
i otoGar3.GL873689          I 3 I 626
s mm10.chr7                  56159092 17 + 145441459 AAGAAAAC---AC-----AGTATTT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60065832 22 -  91889043 GTGAAAAT---ACAGCATAGTATTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             448567 20 +    563711 GTGAAAATGTAAT-----ATAATTT
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13537534 104 +  16154928 I
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=261292.000000
s hg38.chr15_KI270851v1_alt    218086 30 +    263054 --CATCCTTTACTTTTTAATATTATAGATTTC
s panPan2.chr15              74138473 30 -  99763055 --CATCCTCTACTTTTTAATATTATAGATTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183066 30 -    281578 --CATCCTCTACTTTTTAATATTATAGATTTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045821 30 + 121039945 --CATCCTCTACTTTTTAATATTATAGATTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164354432 30 - 169600520 --CATCCTCTACTTTTTAATATTTTAGATTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165675762 30 - 171882078 --CATCCTCTACTTTTTAATATTTTAGATTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       528815 29 +   2379783 --CATCCT-TACTTTTTAATATTTTAGATTTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       487035 30 +   4116138 --CATCCTCTACTTTTTAATATTTTAGATTTC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53917822 30 +  58131712 --CATCCTCTACTTTTTAATATTTTAGATTTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       539464 30 -   3636681 --CATCCTCTACTTTTTAATATTTTAGATTTC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517177 30 -   4457520 --CATCGTCTACTTTTTAATATTTTAGATTTC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551341 30 - 158406734 --CATCCTCTGCTTTTTAGTATTACAGATTTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382154 30 -   2682657 --CATCCTCTACTTTTTAGTATTATAGATTTC
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       468197 30 +   3831555 --CATCCTCTACTTTTTAATATTACAGATTTC
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56159109 30 + 145441459 --CCTACTGCATTTGTTTATACTATAGATTTC
i mm10.chr7                 C 0 I 182
s canFam3.chr3               60065854 28 -  91889043 --CATACtttatttttaaatattatatact--
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             448587 32 +    563711 TAAATATTTCATTGTTCAGTAGTGTGAATTTC
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13537534 104 +  16154928 I
e otoGar3.GL873689             489700 626 +   3845361 I
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=86705.000000
s hg38.chr15_KI270851v1_alt    218116  9 +    263054 ACAGAC--ATT
s panPan2.chr15              74138503 11 -  99763055 ACAGACTTATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183096 11 -    281578 ACAGACTTATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045851 11 + 121039945 ACAGACTTATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164354462 11 - 169600520 ACAGACTTATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165675792 11 - 171882078 ACAGACTTATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       528844 11 +   2379783 ACAGACTTATT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       487065 11 +   4116138 ACAGACTTATT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53917852 11 +  58131712 ACAGACTTATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       539494 11 -   3636681 ACAGACTTATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517207 11 -   4457520 ACAGACTTACT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551371 11 - 158406734 ACAGACTTCTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382184 10 -   2682657 G-AGACTTCTT
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       468227 11 +   3831555 ATGGACTTCTT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             490326 11 +   3845361 ACAGACTTATT
i otoGar3.GL873689          I 626 C 0
s dasNov3.JH562051             448619 11 +    563711 ACAAACTTCTT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56159139 182 + 145441459 I
e proCoq1.NW_012148396v1     13537534 104 +  16154928 I
e canFam3.chr3               60065882  0 -  91889043 C
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=197479.000000
s hg38.chr15_KI270851v1_alt    218125 35 +    263054 TCTTTTTGAGTAGATTTATTGAGTTCTCC--TTTTTT
s panPan2.chr15              74138514 33 -  99763055 TCTTTTTGAGTAGGTTTATCGCGTTCTCC----TGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183107 33 -    281578 TCTTTTTGAGTAGGTTTATCGCGTTCTCC----TGTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045862 31 + 121039945 TCTTTTTGAGTAGGTTTATCGAGTTCT------TTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164354473 36 - 169600520 TCTTTTTGAGTAGGTTTATCGAGTTGTCC-TTTTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165675803 36 - 171882078 TCTTTTTGAGTAGGTTTATCGAGTTGTCC-TTTTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       528855 37 +   2379783 TCTTTTTGAGTAGGTTTATCGAGTTGTCCTTTTTTTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       487076 36 +   4116138 TCTTTTTGAGTAGGTTTATCGAGTTGTCC-TTTTTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53917863 33 +  58131712 TCTTTTTGAGTAGGTTTATCGAGTTGTCC----TTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       539505 36 -   3636681 TCTTTTTGAGTAGGTTTATCGAGTTGTCC-TTTTTTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517218 37 -   4457520 TCTTTTTGAGTAGGTTTATCGAGTTGTCCTTTTTTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551382 31 - 158406734 TCTCTTTGAGTAGGTTTATTGAA-T-TCA----CCTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382194 32 -   2682657 TCTTTTTGAGTAGGTTTATTGAATT-TCC----TTTT
i saiBol1.JH378292          C 0 C 0
s aotNan1.NW_018503298v1       468238 32 +   3831555 TCTTTTTGAGTAGATTTATCGAATT-TCT----CCTT
i aotNan1.NW_018503298v1    C 0 I 1
s otoGar3.GL873689             490337 28 +   3845361 --TGTTTAAGTAGGTTAATCTAGTTTTTT----T---
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56159321 22 + 145441459 TCTCTCTAAGTATATTTCTCAA---------------
i mm10.chr7                 I 182 C 0
s canFam3.chr3               60065882 33 -  91889043 --tttttaaGTAGGTTTATCTGGGTCACa-attttt-
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             448630 23 +    563711 TCTTTTTGAATAGTTTTATCCAA--------------
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13537534 104 +  16154928 I
e cebCap1.NW_016107707v1       406077 2126 -   2086007 M
e panTro5.chr15               9611979 100 +  83230942 I

a score=82109.000000
s hg38.chr15_KI270851v1_alt    218160 10 +    263054 TTTTTCTTTG----
s panPan2.chr15              74138547 10 -  99763055 TTTTTGTTTG----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183140 10 -    281578 TTTTTGTTTG----
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045893 10 + 121039945 TTTTTCTTTG----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164354509 10 - 169600520 TTATTCTTTG----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165675839 10 - 171882078 TTATTCTTTG----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       528892 10 +   2379783 TTTTTCTTTG----
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       487112 10 +   4116138 TTTTTCTTTG----
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53917896 10 +  58131712 TTTTTCTTTG----
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       539541 10 -   3636681 TTTTTCTTTG----
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517255 10 -   4457520 TTTTTCTTTG----
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551413 10 - 158406734 TTTTCCTTTG----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382226 10 -   2682657 TTTTCCTTTG----
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       408222 10 -   2086007 TTTTCCTTTG----
i cebCap1.NW_016107707v1    M 2126 C 0
s aotNan1.NW_018503298v1       468271 10 +   3831555 TTTTCCTTTG----
i aotNan1.NW_018503298v1    I 1 C 0
s otoGar3.GL873689             490365 10 +   3845361 TTTTTTTTTA----
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56159343 10 + 145441459 TCCCTTTTTG----
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60065915  1 -  91889043 ---------a----
i canFam3.chr3              C 0 I 3
s dasNov3.JH562051             448653  8 +    563711 ------TTTAAAAA
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13537534 104 +  16154928 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=2230139.000000
s hg38.chr15_KI270851v1_alt    218170 142 +    263054 AATG-TATTTATTTCTTGTAGTCTACTGGTGCTGTTGTGACGGAGAGCCAGACGTACAAAAACCGAGCTGGTTTCTTGGGTAATGATGATTATGCTGTATATGTGAGAGAGAATATTCAGGTGAGTAATTGTCTTAAGCTGGA
s panPan2.chr15              74138557 142 -  99763055 AATG-TATTTATTTCTTGTAGTCTACTGGTGCTGTTGTGACGGAGAGCCAGACGTACAAAAAACGAGCTGATTTCTTGAGTAATGATGATTATGCTGTATATGTGAGAGAGAATATTCAGGTGAGTAATTGTCTTAAGCTGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183150 142 -    281578 AATG-TATTTATTTCTTGTAGTCTACTGGTGCTGTTGTGACGGAGAGCCAGACGTACAAAAAACGAGCTGATTTCTTGAGTAATGATGATTATGCTGTATATGTGAGAGAGAATATTCAGGTGAGTAATTGTCTTAAGCTGGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71045903 142 + 121039945 AATG-TATTTATTTCTTGTAGTCTACTGGTGCTGTTGTGACGGAGAGCCAGACCTACAAAAAACGAGCTGATTTCTTGAGTAATGATGATTATGCTGTGTATGTGAGAGAGAATATTCAGGTGAGTAATTGTCTTAAGCTGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164354519 142 - 169600520 AATG-TATTTATCTCTTGTAGTCTACTGGTGCTGTTGTGACGGAGAGCCAGACCTACAAAAAACGAGCTGATTTCTTGAGTAATGATGATTATGCTGTATATGTGAGAGAGAATATTCAGGTGAGTAATCGTCTTAAGCTGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165675849 142 - 171882078 AATG-TATTTATCTCTTGTAGTCTACTGGTGCTGTTGTGACGGAGAGCCAGACCTACAAAAAACGAGCTGATTTCTTGAGTAATGATGATTATGCTGTATATGTGAGAGAGAATATTCAGGTGAGTAATCGTCTTAAGCTGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       528902 142 +   2379783 AATG-TATTTATCTCTTGTAGTCTACTGGTGCTGTTGTGACGGAGAGCCAGACCTACAAAAAACGAGCTGATTTCTTGAGTAATGATGATTATGCTGTATATGTGAGAGAGAATATTCAGGTGAGTAATCGTCTTAAGCTGGA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       487122 142 +   4116138 AATG-TATTTATCTCTTGTAGTCTACTGGTGCTGTTGTGACGGAGAGCCAGACCTACAAAAAACGAGCTGATTTCTTGAGTAATGATGATTATGCTGTATATGTGAGAGAGAATATTCAGGTGAGTAATCGTCTTAAGCTGGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53917906 142 +  58131712 AATG-TATTTATCTCTTGTAGTCTACTGGTGCTGTTGTGACGGAGAGCCAGACCTACAAAAAACGAGCTGATTTCTTGAGTAATGATGATTATGCTGTATATGTGAGAGAGAATATTCAGGTGAGTAATCGTCTTAAGCTGGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       539551 142 -   3636681 AATG-TATTTATCTCTTGTAGTCTACTGGTGCTGTTGTGACGGAGAGCCAGACCTACAAAAAACGAGCTGATTTCTTGAGTAATGATGATTATGCTGTATATGTGAGAGAGAATATTCAGGTGAGTAATCGTCTTAAGCTGGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517265 142 -   4457520 AATG-TATTTATCTCTTGTAGTCTACTGGTGCTGTTGTGACGGAGAGCCAGACCTACAAAAAACGAGCTGATTTCTTGAGTAATGATGATTATGCTGTATATGTGAGAGAGAATATTCAGGTGAGTAATCGTCTTAAGCTGGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551423 142 - 158406734 AATA-TATTTATCTCTTACAGTCTACTGGTGCTGTTGTGACGGAGAGCCAGACCTACAAAAAGCGAGCTGATTTCTTGAGTAATGATGATTATGCTGTGTATGTGAGAGAGAATATTCAGGTGAGTAATTGTCTTAAGCTGCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382236 142 -   2682657 AATG-TATTTCTCTCCTACAGTCTACTGGTGCTGTTGTGACGGAGAGCCAGACCTACAAAAAACGAGCTGATTTCTTGAGTAATGATGATTACGCTGTGTATGTGAGAGAGAATATTCAGGTGAGTAGTTGGCTTAGGCTGGA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       408232 142 -   2086007 AATG-TATTTATCTCTTACAGTCTACTGGTGCTGTTGTGACGGAGAGCCAGACCTACAAAAAACGAGCTGATTTCTTGAGTAATGATGATTATGCTGTGTATGTGAGAGAGAATATTCAGGTGAGTAATTGTCTTAAACTGGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       468281 142 +   3831555 AATG-TATTTATCTCTTACAGTCTACTGGTGCTGTTGTGACGGAGAGCCAGACCTTCAAAAAACGAGCTGATTTCTTGAGTAATGATGATTATGCTGTGTATGTGAGGGAGAATATTCAGGTGAGTAATTGTCTTAAGCTGGA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13537638 142 +  16154928 AATG-TATTTCTATTTTGTAGTCTACTGGTGCTGTTGTGACGGAGAGCCAGACCTACAAAAAACGAGCTGATTTTTTGAGTAATGATGATTATGCTGTGTATGTGAGAGAAAATATTCAGGTGAGTCACTGTCTTGGGCTGGA
i proCoq1.NW_012148396v1    I 104 I 14
s otoGar3.GL873689             490375 142 +   3845361 AATG-TATTCATCTTTTGTAGTCTACTGGTGCTGTTGTGACAGAGAGCCGGACCTACAAAACACGATCCGATTTTCTGAGCAATGATGACTATGCTGTGTATGTGAGAGAGAGTGTTCAGGTGAGTCAGCATCTTGGGCTGGA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56159353 140 + 145441459 AATA-TGTTTATCTCATTTAGGCTGCGGGTGCTGTTGTGACTGAGAGCCAGACTTACAAGAAGCGTGCTGATTTCCTGAGCAATGATGATTATGCCGTGTATGTGAGAGAGAACGTTCAGGTGGGCATT--GCTCAGGGTGAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60065919 142 -  91889043 aata-tatttatcttttataGTCTACTGGTGCTGTTGTAACAGAGAGCCAGACATATAAAAAACGAGCTGATTTCTTGAGTAATGATGATTATGCTGTGTATGTGAGAGAGAATATTCAGGTGAGTAAATGTTTTAGCCTGGA
i canFam3.chr3              I 3 C 0
s dasNov3.JH562051             448661 143 +    563711 AATGTTATTTATCTGTTCTAGTCTACTGGTGCTGTTGTAACAGAGAGCCAGACTTATAAAAAACGAGCTGATTTCTTAAGTAATGATGATTATGCTGTCTATGTGAGAGAAAATATTCAGGTGAGTAATTGTCTTACGCTGGA
i dasNov3.JH562051          C 0 C 0
e panTro5.chr15               9611979 100 +  83230942 I

a score=436375.000000
s hg38.chr15_KI270851v1_alt    218312 45 +    263054 GCCTCGATCCGTTTTTCACTCAGCAAATATTTGGGTATGTCCTAT
s panPan2.chr15              74138699 45 -  99763055 GCCTCGATCCGTTTttcactcagcaaatatttgagtatgtcctat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183292 45 -    281578 GCCTCGATCCGTTTttcactcagcaaatatttgagtatgtcctat
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71046045 45 + 121039945 GCCTTGATCCGTTTttcactcagcaaatatttgagtatgtcctat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164354661 45 - 169600520 GCCTCGATCCGTTTttcattcagcagatatttgagtatgtcctat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165675991 45 - 171882078 GCCTCGATCCGTTTttcattcagcagatatttgagtatgtcctat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       529044 45 +   2379783 GCCTCGATCTGTTTttcattcagcagatatttgagtatgtcctat
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       487264 45 +   4116138 GCCTCGATCCGTTTttcattcagcagatatttgagtatgtcctat
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53918048 45 +  58131712 GCCTCGATCCGTTTttcattcagcagatatttgagtatgtcctat
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       539693 45 -   3636681 GCCTCGATCCGTTTttcattcagcagatatttgagtatgtcctat
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517407 45 -   4457520 GCCTCGATCCGTTTTTCATTCAGCAGATACTTGAGTATGTCCTAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551565 45 - 158406734 GCCTTGATCTGTTTTTCATTCACCAAATAGTTGAGTGTACCCTCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382378 45 -   2682657 ACCTTGATCTGTTTttcattcagcaaatatttgagtgggcccgct
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       408374 45 -   2086007 GCCTTGATCTGTTCTTCATTCAGCAAATATTGGAGTGTGCCCTCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       468423 45 +   3831555 GCCTTGATCTGTTTttcattcagcaaatatttgagtgcaccctct
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             490517 21 +   3845361 GCCTTGATC------------------------ACTATCTCCTGT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56159493 43 + 145441459 --CCGTATTCATGCTTTGTCTGACAGCTACTTGACTATCTCCCAT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60066061 38 -  91889043 GCTTTGCTCAGATTTTCAGTCAGCAAATGTTTGAGCAT-------
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             448804 45 +    563711 ACCTTAAGCatttgttcattcatcaaatacttgagcatctactac
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13537780 14 +  16154928 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=500651.000000
s hg38.chr15_KI270851v1_alt    218357 46 +    263054 ATGCCAAACA-----TCAGTGGACAGAGGCCCCTGCCCTCAGGGAGCCTGC
s panPan2.chr15              74138744 46 -  99763055 atgccaaaca-----tcagtggacagaggcccctgccctcagggagcctgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183337 46 -    281578 atgccaaaca-----tcagtggatagaggcccctgccctcagggagcctgc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71046090 46 + 121039945 atgccaaaca-----tcagtggacagaggcccctgccctcagggagcctgc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164354706 46 - 169600520 atgccaaaca-----tcagtggacagaggtccctgccctcagggaacttgc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165676036 46 - 171882078 atgccaaaca-----tcagtggacagaggtccctgccctcagggaacttgc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       529089 46 +   2379783 atgccaaaca-----tcagtggacagaggtccctgccctcagggaacttgc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       487309 46 +   4116138 atgccagaca-----tcagtggacagaggtccctgccctcagggaacttgc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53918093 46 +  58131712 atgccaaaca-----tcaatggacagaggtccctgccctcagggaacttgc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       539738 46 -   3636681 atgccaagca-----tcagtggacagaggtccctgccctcagggaacttgc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517452 46 -   4457520 ATACCAAACA-----TCAGTGgacagaggtccctgccctcagggaacttgc
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551610 45 - 158406734 ATGTCACGCC-----TCAGTGGAC-GAGACCCCTGCCCGCAGGGAGCCTGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382423 45 -   2682657 atgtcacgtg-----tcggtggac-gagacccctgccctcagggagcccgc
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       408419 45 -   2086007 ATGTCACGCC-----TCAGTGGAC-GAGACCCCTGCCTGCAGGGAGCCTGC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       468468 45 +   3831555 atgtcacgcc-----tcagtggac-aagacccctgcccgcagggagcctgt
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13537794 45 +  16154928 ATGCCAGGCA-----TCAGTGGACAGAGGC-CCTGCCCTCAGGGAGCCTGC
i proCoq1.NW_012148396v1    I 14 I 294
s otoGar3.GL873689             490538 46 +   3845361 ATGCCAGGTG-----TCAGTGAACGGAGGTGCTTGTCCTCAGGGCACCTGC
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56159536 51 + 145441459 ATACTAAGCAGTAGTTGAGTTGATAGATGCGCCTGTCCTCTGGGAGCCTGC
i mm10.chr7                 C 0 I 4077
s canFam3.chr3               60066099 14 -  91889043 -------------------------------------CTTAGAAAGTTAGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             448849 46 +    563711 gtgccaaaca-----tctgtgaacaaaggcccctgccctcaaggagcctat
i dasNov3.JH562051          C 0 C 0
e panTro5.chr15               9611979 100 +  83230942 I

a score=2528654.000000
s hg38.chr15_KI270851v1_alt    218403 354 +    263054 CTTCTGGTGCTGGAAGA----CA---TACCTGACCAGTGAGCTCATGGTACGCTAGAAGGTGCTGTGTACCCTGGAATGAGAGAGAGCAGACTACAGTAAAGGGGTGGGAGTG-AGGGCA-CAGTCCAGGGATC---GGGATCTGCAATGAGAAGGTGAGATGGGTGCAAAGCCTACAGGGTGtgaagggtggctgaagggtggctgaGCAGGATG---GGCACCCAGACAGAGGCTGCTGTGGCTGCCCCGGTGTAGCCAGAGGACAGAGGGGCA------------------------------------------------------GATGGGCTCA-GGGGCAGCCGGAGA-GCACAA----GTGGCCTGTCCACGGTGGACATGGCGCAGAGATG-GCTGTTTTCTACTAGCCCCACTTGTGACA
s panPan2.chr15              74138790 344 -  99763055 cttctggtgctggaaga----ca---tacctgaccagtgagctcatggtacgctagaaggtgctgtgtaccctggaatgagagagagcagactacagtaaaggggtaggagtg-agggca-cattccagggatg---tggggctgcaatgagaaggtgagatgggtgcaaagcctacagggtg-----------tgaaggGTGGCTGAGCAGGATG---GGCACCCAGACAGAGGCTGCTGTGGCTGCCCCGGTGTAGCCAGAGGACAGAGGGGCA------------------------------------------------------GATGGGCTCAGGGGGCAGCCGGAGA-GCACAA----GTGGCCTGTCCACGGTGGACATGGCGCAGAGATG-GCTGTTTTCTACTAGCCCCACTTGTGACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183383 343 -    281578 cttctggtgctggaaga----ca---tacctgaccagtgagctcatggtacgctagaaggtgctgtgtaccctggaatgagaaagagcagactacagtaaagaggtaggagtg-agggca-cagtccagggatg---tggggctgcaatgagaaggtgagatgggtgcaaagcctacagggtg-----------tgaaggGTGGCTGAGCAGGATG---GGCACCCAGACAGAGGCTGCTGTGTCTGCCCTGGTGTAGCCAGAGGACAGAGGGGCA------------------------------------------------------GATGGGCTCA-GGGGCAGCCGGAGA-GCACAA----GTGGCCTGTCCACGGTGGACATGGCGCAGAGATG-GCTGTTTTCTACTAGCCCCACTTGTGACA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71046136 343 + 121039945 cttctggtgctggaaga----ca---tacctgaccagtgagctcatggtacgctagaaggtgctgtgtaccctggaatgagaaagagcagactacagtaaaggggtgggagtg-agggca-cattccagggata---gggggctgcaatgagaaggtgagatgggtgcaaagcctacagggtg-----------ggaaggGTGGCTCAGCAGGATG---GGCACCCAGACAGAGGCTGCTGTGGCTGCCCCAGTGGAGCCAGAGGACAGAGGGGCA------------------------------------------------------GATGGGCTCA-GGGGCAGCCGGAGA-GCACAA----GTGGCCTGTCCACAGTGGACATGGCACAGAGATG-GCTGTTTTCTGCTAGTCCCACTTGTGACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164354752 349 - 169600520 tttctggtgctagaaga----ca---tacCTCACCAGTGAGCTCATGACAGGCTAGAAGGTGCTGTGTACCCTGGAATGAGAAAGAGCAGACCACAGTAAAGGGGTGGGAGTG-GGGGCA-CATTGCAGGGATG---GGGGGCTACAATGAGAAAGTGAGATGGGTGCAAAGCCTGCAGGGTG-----------TGAAGGGTGGCTCAGCAGGACGGGCGGCACCCAGACAGAGGCTGCTGTGGCTGCTCCAGAGTAGTCAGAGGACAGAGGGGCAG---------------------------------------------------ATGATGGGCTCG-GGGGAAGCCAGAGA-GCACAA----GTGGCCTGTCCACGGTGGACATGGCGCAGAGATG-GCAGTTTTCTGCTAGCCCCGCTTGTGACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165676082 349 - 171882078 tttctggtgctagaaga----ca---tacCTCACCAGTGAGCTCATGACAGGCTAGAAGGTGCTGTGTACCCTGGAATGAGAAAGAGCAGACCACAGTAAAGGGGTGGGAGTG-GGGGCA-CATTGCAGGGATG---GGGGGCTACAATGAGAAAGTGAGATGGGTGCAAAGCCTGCAGGGTG-----------TGAAGGGTGGCTCAGCAGGATGGGCGGCACCCAGACAGAGGCTGCTGTGGCTGCCCCAGAGTAGTCAGAGGACAGAGGGGCAG---------------------------------------------------ATGATGGGCTCG-GGGGAAGCCAGAGA-GCACAA----GTGGCCTGTCCACGGTGGACATGGCGCAGAGATG-GCAGTTTTCTGCTAGCCCCGCTTGTGACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       529135 349 +   2379783 tttctggtgctagaaga----ca---tacCTCACCAGTGAGCTCATGACAGGCTAGAAGGTGCTGTGTACCCTGGAATGAGAAAGAGCAGACCACAGTAAAGGGGTGGGAGTG-GGGGCA-CATTGCAGGGATG---GGGGGCTACAATGAGAAAGTGAGATGGGTGCAAAGCCTGCAGGGTG-----------TGAAGGGTGGCTCAGCAGGACGGGCGGCACCCAGACAGAGGCTGCTGTGGCTGCCCCAGAGTAGTCAGAGGACAGAGGGGCGG---------------------------------------------------ATGATGGGCTTG-GGGGAAGCCAGAGA-GCACAA----GTGGCCTGTCCACGGTGGACATGGCGCAGAGATG-GCAGTTTTCTGCTAGCCCCGCTTGTGACA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       487355 349 +   4116138 tttctggtgctagaaga----ca---tacCTCACCAGTGAGCTCATGACAGGCTAGAAGGTGCTGTGTACCCTGGAATGAGAAAGAGCAGACCACAGTAAAGGGGTGGGAGTG-GGGGCA-CATTGCAGGGATG---GGGGGCTACAATGAGAAAGTGAGATGGGTGCAAAGCCTGCAGGGTG-----------TGAAGGGTGGCTCAGCAGGACGGGTGGCACCCAGACAGAGGCTGCTGTGGCTGCCCCAGAGTAGTCAGAGGACAGAGGGGCAG---------------------------------------------------ATGATGGGCTCG-GGGGAAGCCAGAGA-GCACAA----GTGGCCTGTCCACGGTGGACATGGCGCAGAGATG-GCGGTTTTCTGCTAGCCCCGCTTGTGACA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53918139 346 +  58131712 tttctggtgctagaaga----ca---tacCTCACCAGTGAGCTCATGACAGGCTAGAAGGTGCTGTGTACCCTGGAATGAGAAAGAGCAGACCACAGTAAAGGGGTGGGAGTG-GGGGCA-CATTGCAGGGATG---GGGGGCTACAATGAGAAAGTGAGATGGGTGCAAAGCCTGCAGGGTG-----------TGAAGGGTGGCTCAGCAGGACG---GGCACCCAGACAGAGGCTGCTGTGGCTGCCTCAGAGTAGTCAGAGGACAGAGGGGCAG---------------------------------------------------ATGATGGGCTCG-GGGGAAGCCAGAGA-GCACAA----GTGGCCTGTCCACGGTGGATGTGGCGCAGAGATG-GCGGTTTTCTGCTAGCCCCGCTTGTGACA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       539784 349 -   3636681 tttctggtgctagaaga----ca---tacCTCACCAGTGAGCTCATGACAGGCTAGAAGGTGCTGTGTACCCTGGAATAAGAAAGAGCAGACCACAGTAAAGGGGTGGGAGTG-GGGGCA-CATTGCAGGGATG---GGGGGCTACAATGAGAAAGTGAGATGGGTGCAAAGCCTGCAGGGTG-----------TGAAGGGTGGCTCAGCAGGATGGGTGGCACCCAGACAGAGGCTGCTGTGGCTGCCCCAGAGTAGTCAGAGTACAGAGGGGCAG---------------------------------------------------ATGATGGGCTCG-GGGGAAGCCAGAGA-GCACAA----GTGGCCTGTCCACAGTGGACATGGCGCAGAGATG-GCGGTTTTCTGCTAGCCCCGCTTGTGACA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517498 346 -   4457520 cttctggagctagaaga----ca---cacCTCACCAGTGAGCTCATGACAGGCTAGAAGGTGCTGTGTACCCTGGAATGAGAAAGAGCAGACCATAGTAAAGGGGTGGGAGTG-GGGGCA-CATTGCAGGGATG---GGGGGCTGCAATGAGAAAGTGAGATGGGTGCAAAGCCTGCAGGGTG-----------TGAAGGGTGGCTCAGAAGGACA---GGCACCCAGACAGAGGCTGCTGTGGCTGCCCCAGAGTAGTCAGAGGACAGAGGGGCAG---------------------------------------------------ATGATGGGCTCG-GGGGAAGCCAGAGA-GCACAA----GTGGCCTGTCCACGGTGGATGTGGCGCAGAGATG-GCGGTTTTCTGCTAGCCCCACTTGTGACG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154551655 346 - 158406734 CTTCTGGTGCTGGAAGACAGTCA---TACCCGGCCAGTGAGCTCATGATGTGCTAGAAGGTGCTGCGTACCCTGCAGTGAGAAAGGGCAGGCCACAGTAAAGGGATGGGAGTG-GGGGCA-CATTCCTGAGGTG----GGGGCTGCAGTGAGAAGGTGAGACGGGTGCAAGGCCCCCAGGGGG-----------TG-AGGGTGGTTCAGCAGGACG---GGCGCCTAGCCAGAAGCTGCTGTGGCTGCCCAAGAGTAGCTAGAGGACACAGGGGTAG---------------------------------------------------ATGGCAGGCTC--GGGGCAGCTGGAGA-CCACAG----GTGGCCTGTCCACGGTGGGCATGGCGCAGGGGCG-GCGGTTTTCTGCCAGCCCCAC-TGTGACA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382468 328 -   2682657 cttctggtgctggaagacagtca---TACCCGGCCAGTGAGCTCAGGATGTGCTAGAAGGTGCTGCGTCCGCTGGCGTGAG-----------------AAAGGGATGGGAGTA-GGGGCA-CGTTCCTGAGATG----GGGGCTGCAGTGAGAAGGTGAGATGGGTGCAAGGCCTGCAGGCTG-----------TG-AGGGTGGCTCAGCAGGACG---AGCGCCCAGCCAGAGGCTGCTGCGGCTGCCGCAGAGTAGCTAGAGGACAGAGGGGTAG---------------------------------------------------ATGGCGGGCTC--AGGGCAGCTGGAGG-GTACAG----GTGGCCTTTCCACAGTGGGCATGGCGCA-GGGCG-GCGGTTTTCTGCCAGGCCCAC-TGTGACA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       408464 372 -   2086007 CTTCTGGTGCTGGAAGGCAGTCA---TAGCCGGCCAGTGAGCTCATGATGTGCTAGAAGGTGCTGCGTACCCTGGAGTGAGAAAGGGCAGACTACAGTACAGGGATGGGAGTG-GGGGCG-CGTTCCTGAGACG----GGGGCTGCAGTGAGAGGGT-------------------------G-----------CG-CGGGTGGCTCCGCAGGACG---GGCGCCCAGCCAGAGGCTGCTGCGGCTGCTGCAGAGCAGCTGAAGGACAGAGGGGCAGATGGCGGGCTCGGGGCAGCTGGAGAGCACAGGCGGCTGGTCCACGGTGGGCATGGCGGGCTC--GGGGCAGCTGGAGA-GCACAG----GCGGCCTGTCCACGGTGGGCATGGCGCAGAGGTG-GTAGTTTTCTGCCAGCCCCAC-CGTGACA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       468513 346 +   3831555 cttctggttctggaagacagtca---tacctggccagtgagcttatgatgtgctagaaggtgctgcgtaccctggagtgagaaagggcagactacggtaaagggatgggagtg-ggggca-cgttcctgagatg----ggggctgcagtgagaaggtgacatgggtgcaaggcctgcagggtg-----------tg-agggTGGCTCAGCAGGACG---GGCGCCCAGCCAGAGGCTGCTGTGGCTACCACAGAGTAGCTAGAGGACAGAGGGTTAG---------------------------------------------------ATGGCGGGCTT--GGGGCAGCTGGAGA-GCACAG----GTGGCCTGTCCATGGTGGGCATGGCGTAGAGGCG-GCGGTTTTCTGCCAGCCCCAC-TGTGACA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             490584 270 +   3845361 GTGTTGGTAGCCCAAGG----CAGGCCAGCTGGGCAGTTAGCTGA-GATAAGTTAGAAG-------------TGGAGAGTGGAGG-------------GAAGGGATTGGAGAGAGGGGTG-TGTTGTTGGGGCTGGTGGGGGCTGCATTGAGGAGGTGTG-----------------GGGGTA-----------GG-AGAGCAGCTTAGCAGGAT----GGCACCCAG--------------------TCCTGAGGGATCAAAGGACAGAGGGACAG---------------------------------------------------AAGATGGG-----TGGGCAGTGGGGGA-GGGGGAGACTGCGTCACATCCACTG------TGACACAGAGATG-GCTTATCTC-----------ATGGTGACA
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60066113 176 -  91889043 --------------------------------------------------------------------AGCCTGGTGGGGGAGGGCACAGCACCCAGCA--------GCAGGG-AGGCCACCGTCACTGGAGCA---GAAGAC---------------------------------------------------TG--------------AGGAGG-----------AACAGAAGATG------------------------AACAAAGAGTGCCAG---------------------------------------------------------------------AGCCAGACACACAAAG----GTGCTTTCTGTACAGT-GATATGGCAGAGAGACATGTGCTTCTCAATTATTCCTATTTTGGACA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             448895 188 +    563711 gttctagtggtggaaga----ca---ga------cagtaatcaaata------TAACAGATTCT-----CATTGAAATGAGAACAAACAGATTAAA------------GAATC-AGGACA--------GAGAAA---------------------------------------------AATG-----------TG-----------------------AGC--------------------------------------------CAGAGGTCCAG---------------------------------------------------------------------AGCTTCAGA-TCAGAGGT--GTGGCTTGTTGACAGTGCCCATGGCTCACTGTGG-GCATTTTTTCATTACCCCTAT-TTTGACA
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13537839 294 +  16154928 I
e panTro5.chr15               9611979 100 +  83230942 I

a score=100118.000000
s hg38.chr15_KI270851v1_alt    218757 17 +    263054 -C-TTCCTA-CATACCTTTC--
s panTro5.chr15              73632861 18 -  83230942 -CTTTCCTACCATACC-TTC--
i panTro5.chr15             n 100 C 0
s panPan2.chr15              74139134 17 -  99763055 --CTTCCTA-CATACCTTTC--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183726 17 -    281578 --CTTCCTA-CATACCTTTC--
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71046479 17 + 121039945 --CTTCCTA-CATACCTTTC--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164355101 17 - 169600520 --CTTCCTA-CATACCTTTC--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165676431 17 - 171882078 --CTTCCTA-CATACCTTTC--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       529484 17 +   2379783 --CTTCCTA-CATACCTTTC--
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       487704 17 +   4116138 --CTTCCTA-CATACCTTTC--
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53918485 17 +  58131712 --CTTCCTA-CATACCTTTC--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       540133 17 -   3636681 --CCTCCTA-CATACCTTTC--
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517844 17 -   4457520 --CTTCCTA-CATACCTTTC--
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154552001 13 - 158406734 --CTTCCTA-CATACC------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382796 13 -   2682657 --CTTCCTG-TACACC------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       408836 13 -   2086007 --CTTCCTA-CATACC------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       468859 13 +   3831555 --CTTCCTA-CATACC------
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             490854 17 +   3845361 --CTTTTTA-TATGGTTTTT--
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60066289 18 -  91889043 -CCTTTAAA-AATATATTTT--
i canFam3.chr3              C 0 I 2
s dasNov3.JH562051             449083 21 +    563711 TCCTTTTAA-AGTATATTTTTG
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13537839 294 +  16154928 I

a score=559256.000000
s hg38.chr15_KI270851v1_alt    218774 47 +    263054 CTTGTTTTTCTT-ATGTA-ATTCTCATTGCCATCAAACTTT----AAAAA---TCT
s panTro5.chr15              73632879 45 -  83230942 CTTG-TTTTCTT-ATCTA-ATTCTCATTG-CATCAAACTTT----AAAAA---TCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74139151 47 -  99763055 CTTGTTTTTCTT-ATGTA-ATTCTCATTGCCATCAAACTTT----AAAAA---TCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183743 47 -    281578 CTTGTTTTTCTT-ATGTA-ATTCTCATTGCCATCAAACTTT----AAAAA---TCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71046496 47 + 121039945 CTTGTTTTTCTT-ATGTA-ATTCTCATTGCCATCAAATTTA----AAAAA---TCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164355118 47 - 169600520 CTTGTTTTTCTT-ATGTA-ATTCTCATTGCCATCAAACTTT----AAAAA---TCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165676448 47 - 171882078 CTTGTTTTTCTT-ATGTA-ATTCTCATTGCCATCAAACTTT----AAAAA---TCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       529501 49 +   2379783 TTT-TTTTTCTT-ATGTATATCGTCATTG-CATCAAACTTT----AAATAATTCTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       487721 47 +   4116138 CTTGTTTTTCTT-ATGTA-ATTCTCATTGCCATCAAACTTT----AAAAA---TCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53918502 47 +  58131712 CTTGTTTTTCTT-ATGTG-ATTCTCATTGCCATCAAACTTT----AAAAA---TCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       540150 47 -   3636681 CTTGTTTTTCTT-ATGTA-ATTCTCATTGCCATCAAACTTT----AAAAA---TCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517861 48 -   4457520 CTTGTTTTTCTTAATGTA-ATTCTCATTGCCATCAAACTTT----AAAAA---TCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154552014 46 - 158406734 -TTGTTTTTCTT-ACGTA-ATTCTCATTGCCATCAAATGTT----AAAAA---TCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382809 46 -   2682657 -TTGTTTTCCTT-ACGTA-ATTCTCATTGCCATCAAATGTG----AAAAA---TCT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       408849 46 -   2086007 -TTGTTTTCCTT-ACGTA-ATTCTCATTGCCATCAATTGTT----AAAAA---TCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       468872 46 +   3831555 -TTGTTTTTCTT-ACATA-ATTCTCATTGCCATCAAATGTT----AAAAA---TCT
i aotNan1.NW_018503298v1    C 0 I 324
s proCoq1.NW_012148396v1     13538133 47 +  16154928 CTTGTTTTTCTT-AAATC-ATTCTCACTGCCATCTAATTTT----TAAAA---CGT
i proCoq1.NW_012148396v1    I 294 C 0
s otoGar3.GL873689             490871 46 +   3845361 GTTAGTTTTCTT-AAATC-ATTCTC-CTGTCATCTAATTTT----TAAAA---TCT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60066309 47 -  91889043 CTTGTTTTTCTT-ATATC-ATTCTTACTGCCATCTAAGTCT----TAAAA---TCT
i canFam3.chr3              I 2 C 0
s dasNov3.JH562051             449104 50 +    563711 CTTGTTTTTCTT-AAAT--GTTCCCACTGCTATCTAATTTTTAAAAAAAA---TCT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I

a score=-373.000000
s hg38.chr15_KI270851v1_alt    218821 3 +    263054 AAT
s panTro5.chr15              73632924 3 -  83230942 AAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74139198 3 -  99763055 AAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183790 3 -    281578 AAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71046543 3 + 121039945 AAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164355165 3 - 169600520 AAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165676495 3 - 171882078 AAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       529550 3 +   2379783 AAT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       487768 3 +   4116138 AAT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53918549 3 +  58131712 AAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       540197 3 -   3636681 AAT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517909 3 -   4457520 AAT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154552060 1 - 158406734 -A-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382855 1 -   2682657 -A-
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       408895 1 -   2086007 -C-
i cebCap1.NW_016107707v1    C 0 C 0
s proCoq1.NW_012148396v1     13538180 3 +  16154928 AGT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             490917 3 +   3845361 AGG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60066356 2 -  91889043 -AT
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             449154 3 +    563711 GGT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e aotNan1.NW_018503298v1       468918 324 +   3831555 I

a score=482760.000000
s hg38.chr15_KI270851v1_alt    218824 41 +    263054 TA---TGTT----TTATATAGTC---CTTTATCTACTTTAAATCATTTCT-T
s panTro5.chr15              73632927 36 -  83230942 TA---T-TT----TTATATA-TC-----TTATCTACTT--AATCATTTCTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74139201 41 -  99763055 TA---TGTT----TTATATAGTC---CTTTATCTACTTTAAATCATTTCT-T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183793 41 -    281578 TA---TGTT----TTATATAGTC---CTTTATCTACTTTAAATCATTTCT-T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71046546 41 + 121039945 TA---TGTT----TTATATAGTC---CTTTATCTACTTTAAATCATTTCT-T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164355168 41 - 169600520 TA---TGTT----TTATATAGCC---CTTTATCTACTTTAAATCATTTCT-T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165676498 41 - 171882078 TA---TGTT----TTATATAGCC---CTTTATCTACTTTAAATCATTTCT-T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       529553 48 +   2379783 TG---TGTTTTTGTTATATAGTCTTTTTTTATTATCTTTAAATCATTTCT-T
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       487771 41 +   4116138 TA---TGTT----TTATATAGTC---CTTTATCTACTTTAAATCATTTCT-T
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53918552 41 +  58131712 TA---TGTT----TTATATAGTC---CTTTATCTACTTTAAATCATTTCT-T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       540200 41 -   3636681 TA---TGTT----TTATATAGTC---TTTTATCTACTTTAAATCATTTCT-T
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517912 41 -   4457520 TA---TGTT----TTATATAGTC---CTTTATCTACTTTAAATCATTTCT-T
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154552061 39 - 158406734 -----TGTT----TTATATAGGA---CTTTATCTACTTTAAATCACTTCT-T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382856 39 -   2682657 -----TGTC----TTACATAGGC---CTTTATCTACTTTAAATCATTTCT-T
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       408896 37 -   2086007 -------TT----TTATATAGGC---CTTTATCTACTTTTTATCATTTCT-T
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       469242 41 +   3831555 TA---TGTT----TTATATAGGC---CTTTATCTACTTTAAATCATTTCT-T
i aotNan1.NW_018503298v1    I 324 C 0
s proCoq1.NW_012148396v1     13538183 41 +  16154928 TA---TGTT----TTATGTAGTC---CTTTATCCACCTTAACTCCTTTCT-T
i proCoq1.NW_012148396v1    C 0 I 1557
s otoGar3.GL873689             490920 39 +   3845361 TG---TGTT----TTATATGGTC-----TTATCCATCTTGAATCCTTTCT-T
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60066359 44 -  91889043 TAGACTTTT----TTATATAGTC---CTTTATGTATCTTCAATCCTTTCT-T
i canFam3.chr3              I 1 I 5
s dasNov3.JH562051             449157 41 +    563711 TA---TGTT----TTATGAAGTA---CTATAACCACCTTAAATCCTTTCT-T
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I

a score=154148.000000
s hg38.chr15_KI270851v1_alt    218865 21 +    263054 GTCCT---AATTCTCTTGT-TTTAG-------
s panTro5.chr15              73632963 20 -  83230942 GTCC----AATTCTCTTGT-TTTAG-------
i panTro5.chr15             C 0 n 0
s panPan2.chr15              74139242 18 -  99763055 GTCCT---AATTC---TGT-TTTAG-------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183834 21 -    281578 GTcct---aattctcttgt-tttag-------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71046587 21 + 121039945 GTcct---aattctcttgt-tttag-------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164355209 21 - 169600520 GTcct---aattctcttgt-tttag-------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165676539 21 - 171882078 GTcct---aattctcttgt-tttag-------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       529601 19 +   2379783 GTCCT---AAT--TCCTGT-TTTAG-------
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       487812 21 +   4116138 GTcct---aattctcttgt-tttag-------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53918593 21 +  58131712 GTcct---aattctcttgt-tttag-------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       540241 21 -   3636681 GTcct---aattctcttgt-tttag-------
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517953 21 -   4457520 GTcct---aattctcttgt-tttag-------
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154552100 15 - 158406734 GTCCT---AA------TGT-TTTAG-------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382895 15 -   2682657 GTCCT---AA------TGt-tttag-------
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       408933 15 -   2086007 GTCCT---AA------TGt-tttag-------
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       469283 15 +   3831555 GTCCT---AA------TGT-TTTAG-------
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             490959 18 +   3845361 -TCCTTCAAATTCTTTTGT-------------
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60066408 22 -  91889043 GTTTT---AATtcttttctagttag-------
i canFam3.chr3              I 5 C 0
s dasNov3.JH562051             449198 28 +    563711 GTTCG---AAATTTTTTCT-TCTAGTTTACag
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I

a score=360744.000000
s hg38.chr15_KI270851v1_alt    218886 29 +    263054 TAtattttagagaaaatcccccaaatcat
s panTro5.chr15               9612079 29 +  83230942 TAtattttagagaaaatcccccaaatcat
i panTro5.chr15             I 100 C 0
s panPan2.chr15              74139260 29 -  99763055 TAtattttagagaaaatcccccaaatcat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183855 29 -    281578 tatattttagagaaaatcccccaaatcgt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71046608 29 + 121039945 tatattttagagaaaatcccccaaatcat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164355230 29 - 169600520 tatgttttagagaaaatcccccaaatcat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165676560 29 - 171882078 tatgttttagagaaaatcccccaaatcat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       529620 29 +   2379783 TATGTTTTAGAGAAAAGTCCCCAAATCAT
i macNem1.NW_012011934v1    C 0 I 1290
s cerAty1.NW_012001462v1       487833 29 +   4116138 tatgttttagagaaaatcccccaaatcat
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53918614 29 +  58131712 tgtattttagagaaaatcccccaaatcat
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       540262 29 -   3636681 tatgttttagagaaaatcccccaaatcat
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       517974 29 -   4457520 tatattttagagaaaatcccccaaatcat
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154552115 29 - 158406734 TATATTTTAGAGAAAATCCCCCAAATTAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382910 29 -   2682657 aatattttagagaaaatcccccaaattgt
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       408948 29 -   2086007 aatattttagagaagatcccccagattat
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       469298 29 +   3831555 TAtattttagagaaaatcccccacattat
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             490977 25 +   3845361 ----TTTCAGAGAAGGGCCCTAAAATCAT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60066430 29 -  91889043 tatacttcagagaaaataccagaaatcat
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             449226 29 +    563711 tatagtttagaaaaaaccccagatgtcat
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I

a score=2288116.000000
s hg38.chr15_KI270851v1_alt    218915 258 +    263054 ctcatttcacc-tgtatatatgtcagtgagtatcacta----ataaagaa---------------------------------------------------------------------------------------------------------------------------tctta-----acataatgacatttctgtttaccagcattacctaacaaaataaataataattccttaatatcatctcatatctaacgcttgcttgtagttttccagttttctcagaaatggcttta-atggttag-tttttgaa-cttggata-aaccaagattgtatgccttatctgc-atttggttgatggatctttgaagtctattccaagctagagtgg
s panTro5.chr15               9612108 257 +  83230942 ctcatttcacc-tgtatatatgtcagtg-gtatcacta----ataaagaa---------------------------------------------------------------------------------------------------------------------------tctta-----acataatgacatttctgtttaccagcattacctaacaaaataaataataattccttaatatcatctcatatctaacgcttgcttgtagttttccagttttctcagaaatggctcta-atggttag-tttttgaa-cttggata-aaccaagattgtatgccttatctac-atttggttgatggatctttgaagtctattccaagctagagtgg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74139289 258 -  99763055 ctcatttcacc-tgtatatatgtcagtgagtatcacta----ataaagaa---------------------------------------------------------------------------------------------------------------------------tctta-----acataatgacatttctgtttaccagcattacctaacaaaataaataataattccttaatatcatctcatatctaacgcttgcttgtagttttccagttttctcagaaatggctcta-atggttag--ttttgaa-cttggatacaaccaagattgtatgccttatctac-atttggttgatggatctttgaagtctattccaagctagagtgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       183884 260 -    281578 ctcatttcacc-tgtatatatgtcagtgagtatcacta----ataaagaa---------------------------------------------------------------------------------------------------------------------------tctta-----acataatgacatttctgtttaccagcattacctaacaaaataaataataattccttaatatcatctcatatctaacgcttgcttgtagttttccagttttctcagaaatggcttta-atggttagttttttgaa-cttggatacaaccaagattgtatgccttatctac-atttggttgatagatctttgaagtctattccaacctagagtgg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71046637 260 + 121039945 ctcatttcaccttgtatgtatgtcagtgtgtatcacta----ataaagaa---------------------------------------------------------------------------------------------------------------------------tctta-----acataatgacatttctgtttaccagcattacctaacaaaataaataataattccttaatatcatcccatatctaacgcttgcttgtagttttccagttttctcagaaatggcttta-atggttag-tttttgaa-cttggatacaaccaagattgtatgccttatctac-atttggttgatggatctttgaagtctatttcaacctagagtgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164355259 259 - 169600520 ctcatttcacc-tgtatatatgtcagtatgtatcccta----atgaagaa---------------------------------------------------------------------------------------------------------------------------tctta-----acatgatgacatttctgtttaccaacattacctaacaaaagaaataatacttccttaatatcatctcatacctaatgcttgcttgtagttttccagttttctcagaaatggcttta-atggttag-tttttgaa-cttggatacagccaagattgtttgccttatctgc-atttggttggtggatctttgaagtctatttcaacctagagtgg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165676589 259 - 171882078 ctcatttcacc-tgtatatatgtcagtatgtatcccta----atgaagaa---------------------------------------------------------------------------------------------------------------------------tctta-----acatgatgacatttctgtttaccaacattacctaacaaaagaaataatacttccttaatatcatctcatacctaatgcttgcttgtagttttccagttttctcagaaatggcttta-atggttag-tttttgaa-cttggatacagccaagattgtatgccttatctgc-atttggttggtggatctttgaagtctatttcaacctagagtgg
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       487862 259 +   4116138 ctcatttcacc-tgtatatatgtcagtatgtatcccta----atgaagaa---------------------------------------------------------------------------------------------------------------------------tctta-----acatgatgacatttctgtttaccaacattacctaacaaaagaaataatacttccttaatatcatctcatacctaatgcttgcttgtagttttccagttttctcagaaatggcttta-atggttag-tttttgaa-cttggatacagccaagattgtatgccttatctgc-atttggttggtggatctttgaagtctatttcaacctagagtgg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53918643 259 +  58131712 ctaatttcacc-tgtatatatgtcagtatgtatcccta----atgaagaa---------------------------------------------------------------------------------------------------------------------------tctta-----acatgatgacatttctgtttaccaacattacctaacaaagtaaataatacttccttaatatcatctcatacctaatgcttgcttgtagttttccagttttctcagaaatggcttta-atggttgg-tttttgaa-cttggatacagccaagattgtatgccttatctgc-atttggttggtggatctttgaagtctatttcaacctagagtgg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       540291 259 -   3636681 ctcatttcacc-tgtatatatgtcagtatgtattccta----atgaagaa---------------------------------------------------------------------------------------------------------------------------tctta-----acatgatgacatttctgtttaccaacattacctaacaaaagaaataatacttccttaatatcatctcatacctaatgcttgcttgtagttttccagttttctcagaaatggcttta-atggttag-tttttgaa-cttggatacagccaagattgtatgccttatctgc-atttggttggtggatctttgaagtctatttcaacctagagtgg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       518003 259 -   4457520 ctcatttcacc-tgtatatatgtcagtatgtatcccta----ataaagaa---------------------------------------------------------------------------------------------------------------------------tctta-----acacgatgacatttctgtttatcaacattacctaacaacataaataatacttccttaatgtcatctcgtacctaatgcttgcttgtagttttccagttttctcagaagtggcttta-atggttag-tttttgaa-cttggatacagccaagattgtatgccttatctgc-atttggttgatggatctttgaagtctctttcaacctagagtgg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154552144 242 - 158406734 TTCATTTTACC-TGTA--TATGTCAGCATGTATACCTA-TGGATAAAGGA---------------------------------------------------------------------------------------------------------------------------TCTTA-----ACATAATGACATTTCCGTTAGCCAACATTACCTAACAAAGTAAATAACAACTTCTTAGTATTATCTCATGTGTAACGCTTGCTCGTCGTTTTCAGGTTTTCTCAGAAATGGCTTTT-ATGGTTAG-TTTTTGAA-CTTGGATACAACCAAGATTATATGCCTTGTCTAC-------------------TGAAGTATGTTTCAACCTAGAGTGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             382939 260 -   2682657 ttcatttcacc-tgta--tatgtcagcgtgcatcgccc-tggatgaaaga---------------------------------------------------------------------------------------------------------------------------tctta-----acataatgacgtttccgttagccaacatgatctaacaaagtaaacaataatttctcagtatcgtctcatgtctaacgcttgctcatagttttccagtttcctcagaaatggctctt-atggttag-tttttgaa-cttggatacaaccaagattgtatgtcttgtctac-ttttggatgatggctctttgaagtatgtttcaacctagagggg
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       408977 260 -   2086007 ttcatttcacc-tgta--tgtgtcagcttgtatccctg-tggataaagga---------------------------------------------------------------------------------------------------------------------------tctta-----acataatgacttttccgtgagccaacattacctaacaaagtaaataataatgtcttagtatcgtcccatgtctgacgcttgctcgttgttttccagtttcctcagaaatagctttt-atagttac-tttttgaa-cttggatacaaccgagattgtatgccttgcctgc-ttttggatgatggctctttgaagtgtgtttcagcctGGAGTGG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       469327 259 +   3831555 ttcatttcacc-tgta--tatgtcagcatgtatcccta-tggataaagga---------------------------------------------------------------------------------------------------------------------------tctta-----gcataaagtcatttccgttagccaacattacctaacaaagtaagtaataatttcttagtattgtcttatgtctaacacttgctc-cagttttccagttttctcagaaatgactttt-atggttag-tttttgaa-cttggatacaaccaagattgtatgccttgtctac-ttttggatgatggctctttgaagtgtgtttcaacctagagtgg
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             491002 219 +   3845361 CTCA--------TGTAAATGTGTCGGTGTGTGTCCCTACTAGATAAAACA---------------------------------------------------------------------------------------------------------------------------TTTTATTTTTAAATAATGAA---TCTGTTATGTAAaataacctaa-----------------------tatgatcttatatctggtgcttgtttaggttttcctagttttttga-aaatggctttgtattgttag-tattttaa------atacaaacgagatcataaaccttattaataatttgggtaatatctctctgaagtc------------acatgg
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60066459 370 -  91889043 ctcctttcatc-tgtaaacatgtcagtatttatttgtaatagataaaggattcCCCCCCCCCCCCCGTCaagtaagctgtattcccagcatggggcttgaactcacaaccccagtatcgagagtcttatgttctactgggtgagccagccaagcactcTGATAaaggatttgttttta-----gcttaacaacattactgttacctaatgttaactaacaaaatatataataattccataatatcatcttatagccagtggttgctcagattttcccagttgtctcagaaattgc--------------tttttgaa-tttgaatataaacagggccatacacctta----c-atttgagtgatgtctttttgaagtgtctcttaacctggaacag
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             449255 222 +    563711 ctcattccatc-tgta--aatgtcagtatgtatcctaa-caaataaaaag---------------------------------------------------------------------------------------------------------------------------attaa-----tttttaatacactactgttatctaacattgcctaac---------aataatttattaatatcatcttatacccggtgcttgctcaaatttccccagt--------------------acagttag-ttttaaaaatttggatatatgtaagatcatgcaccttat-----atttg-------tgtctctgaagtctgttttaacctaaaagag
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e macNem1.NW_012011934v1       529649 1290 +   2379783 I

a score=140241.000000
s hg38.chr15_KI270851v1_alt    219173 14 +    263054 ttcccccttgtc-----tt
s panTro5.chr15               9612365 14 +  83230942 ttcccccttgtc-----tt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74139547 14 -  99763055 ttcccccttgtc-----tt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       184144 14 -    281578 ttcccccttgtc-----tt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71046897 14 + 121039945 ttcccccttgtc-----tt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164355518 14 - 169600520 ttccccctTGTC-----tt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165676848 14 - 171882078 ttcccccttgtc-----tt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       488121 14 +   4116138 ttccccctTGTC-----tt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53918902 14 +  58131712 ttcccccttgtc-----tt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       540550 14 -   3636681 ttccccctTGTC-----tt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       518262 14 -   4457520 ttccccctTGTC-----tt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154552386 14 - 158406734 CTCCCCCTTGCC-----tt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             383199 14 -   2682657 ctcccccttgtc-----tt
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       409237 14 -   2086007 GTCCCCATGGTC-----GT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       469586 14 +   3831555 ctcccccttgtc-----tt
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             491221 19 +   3845361 ctcccccttgtctcagatt
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60066829 14 -  91889043 ttttccctcctt-----tt
i canFam3.chr3              C 0 I 971
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             449477  0 +    563711 C
e macNem1.NW_012011934v1       529649 1290 +   2379783 I

a score=1027687.000000
s hg38.chr15_KI270851v1_alt    219187 134 +    263054 agctcagttggctataacacagtaccataga-ctggcagc--ttca---acaacagacatttatttctcatggttctggaggctggaaatccaagatcaaggtaccagcttggctggattctggtgatggccctcttcct
s panTro5.chr15               9612379 134 +  83230942 agctcagttggctataacacagtaccttaga-ctggcagc--ttca---acaacagacatttatttcccatggttctggaggctggaaatccaagatcaaggtaccagcttggctggattctggtgatggccctcttcct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74139561 134 -  99763055 agctcagttggctataacacagtaccataga-ctggcagc--ttca---acaacagacatttatttcccatggttctggaggctggaaatccaagatcaaggtaccagcttggctggattctggtgatggccctcttcct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       184158 134 -    281578 agctcagttggctataacacagtaccataga-ctggcagc--ttca---acaacagacatttatttctcgtggttctggagtctggaaatccaagatcaaggtaccagcttggctggtttctggtgatggccctcttcct
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71046911 122 + 121039945 agctcagttggctataacacagtaccataga-ctggcagc--ttca---acaacagacatttatttctcatggttctggaggctggaaatccaagatcaa------------gctggtttctggtgatggccctcttcct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164355532 134 - 169600520 agctcagtctgctgtaacacagtaccataga-ttggcggc--ttca---acagcggatacttatttttcatggttctggaggctggaaatccaagatcaaggtgccagcttggctggtttctggtgatggcccttttcct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165676862 134 - 171882078 agctcagtctgctgtaacacagtaccataga-ttggcggc--ttca---acagcggatacttatttttcatggttctggaggctggaaatccaagatcaaggtgccagcttggctggtttctggtgatggcccttttcct
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       488135 135 +   4116138 agctcagtctgctgtaacacagtaccgtagacctggcggc--ttca---acagcggatacttacttttcatggttctggaggctggaaatccaagatcaaggtgccagcttggctggtttctggtgatggccctcttcct
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53918916 135 +  58131712 agctcagtctgctgtaacacagtaccgtagacctggcggc--ttca---acagcggatacttatttttcatggttctggacgctggaaatccaagatcaaggtgccagcttggctagtttctggtgatggccctcttcct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       540564 135 -   3636681 agctcagtctgctgtaacacagtaccgtagacctggcggc--ttca---acagcggatacttacttttcatggttctggaggctggaaatccaagatcaaagtgccagcttggctggtttctggtgatggccctcttcct
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       518276 135 -   4457520 agctcagtctgctgtaacacagcactgtagacctggcggt--ttca---acagcagatactcatttttcatggttctggacgctggaaatccaagatcaaggtgccagcttggctgatttctggtgatggccctcttcct
i colAng1.NW_012115278v1    C 0 M 514
s calJac3.chr6              154552400 136 - 158406734 agctcaggctgctgtaacacagcaccataga-ctggtggc--ttcagcgatagcagacgtttatttctcctgggtctggaggctgggcatccgagatcaaggtgccagcctggctcgtttctggtgaggg-cctcttcct
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             383213 136 -   2682657 agctcaggccgctgtagtacagcaccatcga-ctgatggc--ttcagagatagcagacctttacttctcatgggtctgcccgctagacacccaagatccaagtgccagcctggcaggtttctggtgaggg-cctcttcct
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       409251 118 -   2086007 Agctcaggctgctgta--acagcaccataga-ctgctgg------------------cctttatttctcatgggtctggaggctggacatccaagagcaaggtgccagcctggcaggtttctggtgaggg-cgtcttcct
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       469600 136 +   3831555 agctcaggctgctgtaacacagcaccataga-ctgatggc--ttcagcgacagcagacatttatttcttatgggtctggaggctggacatccaagatcaaggtgtcagcctggctggtttctggtaaggg-cctcttcct
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             491240 123 +   3845361 agctccggctgctatggcaaaatcccctgga-ctggaagtagctta---gcaacagacgttcacgt---atggctctggaggctggg---------ccaaggtcctagttgggctgatttctggtgg-gatcttcttcct
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             449477   0 +    563711 C
e canFam3.chr3               60066843 971 -  91889043 I
e macNem1.NW_012011934v1       529649 1290 +   2379783 I

a score=31500.000000
s hg38.chr15_KI270851v1_alt    219321 3 +    263054 ggc
s panTro5.chr15               9612513 3 +  83230942 ggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74139695 3 -  99763055 ggC
i panPan2.chr15             C 0 I 20
s gorGor5.CYUI01000141v1       184292 3 -    281578 ggc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71047033 3 + 121039945 ggc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164355666 3 - 169600520 ggc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165676996 3 - 171882078 ggc
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       488270 3 +   4116138 ggc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53919051 3 +  58131712 ggc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       540699 3 -   3636681 ggc
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154552536 3 - 158406734 ggc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             383349 3 -   2682657 ggc
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       409369 3 -   2086007 ggc
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       469736 3 +   3831555 ggc
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             491363 3 +   3845361 ggc
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             449477 0 +    563711 C
e canFam3.chr3               60066843 971 -  91889043 I
e colAng1.NW_012115278v1       518411 514 -   4457520 M
e macNem1.NW_012011934v1       529649 1290 +   2379783 I

a score=130268.000000
s hg38.chr15_KI270851v1_alt    219324 17 +    263054 ttgtaggtggctacc-tt
s panTro5.chr15               9612516 17 +  83230942 ttttaggtggctacc-tt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       184295 17 -    281578 ttgtaggtggctacc-tt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71047036 17 + 121039945 ttgtaggtggctgcc-tt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164355669 17 - 169600520 ttgtaggtggctacc-tt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165676999 17 - 171882078 ttgtaggtggctacc-tt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       488273 17 +   4116138 ttgtaggtggctacc-tt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53919054 18 +  58131712 ttgtaggtggctaccttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       540702 17 -   3636681 ttgtaggtggctacc-tt
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154552539 17 - 158406734 ttgtaggtggctgcc-tt
i calJac3.chr6              C 0 I 72
s saiBol1.JH378292             383352 17 -   2682657 ttgtagatggctgcc-tt
i saiBol1.JH378292          C 0 I 66
s cebCap1.NW_016107707v1       409372 17 -   2086007 ttgtaggtggctgcc-tt
i cebCap1.NW_016107707v1    C 0 I 1732
s aotNan1.NW_018503298v1       469739 17 +   3831555 ttgtaggtggctgcc-tt
i aotNan1.NW_018503298v1    C 0 I 1528
s otoGar3.GL873689             491366 17 +   3845361 ttgtaggtggccacc-tt
i otoGar3.GL873689          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             449477  0 +    563711 C
e canFam3.chr3               60066843 971 -  91889043 I
e panPan2.chr15              74139698 20 -  99763055 I
e colAng1.NW_012115278v1       518411 514 -   4457520 M
e macNem1.NW_012011934v1       529649 1290 +   2379783 I

a score=12828.000000
s hg38.chr15_KI270851v1_alt    219341 3 +    263054 ttt
s panTro5.chr15               9612533 3 +  83230942 ttt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       184312 3 -    281578 ctt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71047053 3 + 121039945 ttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164355686 3 - 169600520 ttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165677016 3 - 171882078 ttt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       488290 3 +   4116138 ttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53919072 3 +  58131712 ttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       540719 3 -   3636681 ttt
i manLeu1.NW_012102332v1    C 0 C 0
s saiBol1.JH378292             383435 3 -   2682657 ttt
i saiBol1.JH378292          I 66 C 0
s otoGar3.GL873689             491383 3 +   3845361 ctt
i otoGar3.GL873689          C 0 I 1008
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             449477 0 +    563711 C
e canFam3.chr3               60066843 971 -  91889043 I
e aotNan1.NW_018503298v1       469756 1528 +   3831555 I
e cebCap1.NW_016107707v1       409389 1732 -   2086007 I
e panPan2.chr15              74139698 20 -  99763055 I
e colAng1.NW_012115278v1       518411 514 -   4457520 M
e macNem1.NW_012011934v1       529649 1290 +   2379783 I
e calJac3.chr6              154552556 72 - 158406734 I

a score=180100.000000
s hg38.chr15_KI270851v1_alt    219344 54 +    263054 ttttttttttttttttt------gagacagagtctcgctctgtcacccaggctggagtgc
s panTro5.chr15               9612536 60 +  83230942 tttttttttttttttttttttttgagacagagtctcgctctgtcacccaggctggagtgc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       184315 55 -    281578 ttttttttttttttttt-----tgagacagagtctcgctctgtcacccaggctggtgtgc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71047056 43 + 121039945 tttttt-----------------gaaacagagtctcactctgtcgcccaggctggagtgc
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7              164355689 50 - 169600520 tttgttttttttt----------gagatggagtcttgctctgtcgcccaggctagagtgc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165677019 50 - 171882078 tttgttttttttt----------gagatggagtcttgctctgtcgcccaggctagagtgc
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       488293 50 +   4116138 ttttttttttttt----------gagatggagtcttgctctgtcgcccaggctagagtgc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53919075 50 +  58131712 ttttttttttttt----------gagatggagtcttgctctgtcgcccaggctagagtgc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       540722 50 -   3636681 ttttttttttttt----------gagatggagtcttgctctgtcgcccaggctagagtgc
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154552628 45 - 158406734 ----ttttttttt----------gagacggaatcttgctttgttg-ccaggctggagagc
i calJac3.chr6              I 72 C 0
s saiBol1.JH378292             383438 49 -   2682657 ttttttttttttt----------gaggtagagtcttgctctgttt-ccaggctggagggc
i saiBol1.JH378292          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             449477  0 +    563711 C
e canFam3.chr3               60066843 971 -  91889043 I
e aotNan1.NW_018503298v1       469756 1528 +   3831555 I
e otoGar3.GL873689             491386 1008 +   3845361 I
e cebCap1.NW_016107707v1       409389 1732 -   2086007 I
e panPan2.chr15              74139698 20 -  99763055 I
e colAng1.NW_012115278v1       518411 514 -   4457520 M
e macNem1.NW_012011934v1       529649 1290 +   2379783 I

a score=261793.000000
s hg38.chr15_KI270851v1_alt    219398 76 +    263054 agtggcgtgatctcagctcactacaagctccgcctcccgggttcctgccattctcctgcctcagcctcctgagtag
s panTro5.chr15               9612596 76 +  83230942 agtggcgtgatctcagctcactacaagctccgcctcccgggttcatgccattctcctgcctcagcctcctgagtag
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       184370 76 -    281578 agtggcgtgatctcagctcactacaagctccgcctcccgggttcatgccattctcctgcctcagcctcccgagtag
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164355739 76 - 169600520 agtggtgcgatctccactcactgcaacctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165677069 76 - 171882078 agtggtgcgatctccactcactgcaacctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtag
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       488343 76 +   4116138 agtggtgcgatctccactcactgcaacctccgcctcccgcgttcacgccattctcctgcctcagcctcccgagtag
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53919125 76 +  58131712 ggtggtgcgatctccactcactacaagctccgcctcccgggttcatgccattctcctgcctcagcctccggagtag
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       540772 76 -   3636681 agtggtgcgatctccactcactgcaacctccgcctcccgcgttcacgccattctcctgcctcagcctcccgagtag
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154552673 76 - 158406734 agtggcatgatcttggctcactacaacctctgcctcctgggtgcaagtgattcccctgccttagtctactcagtag
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             383487 76 -   2682657 tatggcatgatcttggctcactacaacctccgcctcctgggttcaagtgattcccctgcctcagcctactgagtag
i saiBol1.JH378292          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             449477  0 +    563711 C
e canFam3.chr3               60066843 971 -  91889043 I
e aotNan1.NW_018503298v1       469756 1528 +   3831555 I
e otoGar3.GL873689             491386 1008 +   3845361 I
e cebCap1.NW_016107707v1       409389 1732 -   2086007 I
e nomLeu3.chr6               71047099  1 + 121039945 I
e panPan2.chr15              74139698 20 -  99763055 I
e colAng1.NW_012115278v1       518411 514 -   4457520 M
e macNem1.NW_012011934v1       529649 1290 +   2379783 I

a score=211491.000000
s hg38.chr15_KI270851v1_alt    219474 154 +    263054 ctgggactacaggtgcccgccaccatgctcagctaatttttttgtatttttagtagagacgggatttcaccatgttagccaggatggtctcgatctcctaacctc--gtgatctacccgccttggcctcccaaagtgttggaattataggcatgag
s panTro5.chr15               9612672 154 +  83230942 ctgggactacaggtgcccgccaccatgctcagctaatttttttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctaacctc--gtgatctacccgccttggcctcccaaagtgttggaattataggcatgag
i panTro5.chr15             C 0 C 0
s rheMac8.chr7              164355815  90 - 169600520 -----------------------cacgcctggctaatttttttgtatttttagaagagaagggatttcaccatgttagccaggatggttttgatctcctgacctt--gtgatcca-----------------------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165677145  90 - 171882078 -----------------------cacgcccggctaatttttttgtatttttagaagagaagggatttcaccatgttagccaggatggttttgatctcctgacctt--gtgatcca-----------------------------------------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       488419  90 +   4116138 -----------------------cacgcccggctaatttttttgtatttttagaagagaagggatttcaccatgttagccaggatggtcttgatctcctgacctt--gtgatcca-----------------------------------------
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53919201  90 +  58131712 -----------------------cacacccggctaatttttttgtatttttagaagagaaggggtttcaccatgttagccaggatggtcttgatctcctgacctt--gtgatcca-----------------------------------------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       540848  90 -   3636681 -----------------------cacgcccggctaatttttttgtatttttagaagagaagggatttcaccgtgttagccaggatggtcttgatctcctgacctt--gtgatcca-----------------------------------------
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154552749 151 - 158406734 ctgggactacaggtgcctgccatcacgcctggctaa---ttttgtatttttagtagagac-gggttttactacgttggtcaggctggtctcaaactcccgacctcaggtgatccgtccgccttggcctccc-aagtgctgggattacaggcatgag
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             383563 153 -   2682657 ctaggactacaggtgcatgccaccacgcctggctga---ttttgtatttttagtagagacggggtttcattatgttggtcaggcttgtctcacattcccgacctcaggtgacctgtccgtcttggcctcccaaagtgctgggattacaggcatgag
i saiBol1.JH378292          C 0 I 1802
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             449477   0 +    563711 C
e canFam3.chr3               60066843 971 -  91889043 I
e aotNan1.NW_018503298v1       469756 1528 +   3831555 I
e otoGar3.GL873689             491386 1008 +   3845361 I
e cebCap1.NW_016107707v1       409389 1732 -   2086007 I
e nomLeu3.chr6               71047099   1 + 121039945 I
e panPan2.chr15              74139698  20 -  99763055 I
e gorGor5.CYUI01000141v1       184446   0 -    281578 C
e colAng1.NW_012115278v1       518411 514 -   4457520 M
e macNem1.NW_012011934v1       529649 1290 +   2379783 I

a score=254631.000000
s hg38.chr15_KI270851v1_alt    219628 167 +    263054 ccaccgtgcccggccaggtggctgccttcttgctgtgtcctcctgtggacgtggggctggggatggggggagctggagctagcaggggagcactggtgtcttttt--ttttttttt-tttttttttttttttgagacggtgtttcgctcttgttgcctaggctggaacgc
s panTro5.chr15               9612826 166 +  83230942 ccaccgtgcccggccaggtggctgccttcttgctgtgtcctcctgtggacgtggggctggggatggggggagctggagctagcaggggagcactggtgtcttttt--ttttttttt-tttttttttttttt-gagacgatatttcgctcttgttgcctaggctggaatgc
i panTro5.chr15             C 0 C 0
s rheMac8.chr7              164355905 148 - 169600520 --------cctggtcaggtgactgccttcttgctgtgtcctcctgtggatgtggggctggggatgtggggagctggagctaacaggggaggactggtgtctgttg--ttttttttt-gttt-----------gaaatgaagtattgctcttgttgccaaggctggagcac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165677235 147 - 171882078 --------cctggtcaggtgactgccttcttgctgtgtcctcctgtggatgtggggctggggatgtggggagctggagctaacaggggaggactggtgtctgttg--ttttttttt--ttt-----------gaaatgaagtattgctcttgttgccaaggctggagcac
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       488509 149 +   4116138 --------cctggtcaggtggctgccttcttgctgtgtcctcctgtggatgtggggctggggatgtggggagctggagctaacaggggaggactggtgtctgttg--tttttttttttttt-----------gaaatgaagtattgctcttgttgcctaggctggagcac
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53919291 148 +  58131712 --------cctggtcaggtggctgccttcttgctgtgtcctcctgtggatgtggggctggctatgtggggagctgaagctaacaggggaggactggtgtctgttg--tgttttttt-tttt-----------gaaatgaagtattgctcttgttgcctaggctggagcac
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       540938 150 -   3636681 --------cctggtcaggtggctgccttcttgctgtgtcctcctgtggatgtggggctggggatgtggggagctggagctaacaggggaggactggtgtctgttgttttttttttt-tttt-----------gaaatgaggtattgctcttgttgcctaggctggagcac
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154552900  81 - 158406734 -----------------------------tcactatgctctgct-------------------------------------------------tggtgtctcctc--ttttttttt-ttttttt--------gagacggagtttcgctcttgttaccaaggctggagtgc
i calJac3.chr6              C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             449477   0 +    563711 C
e canFam3.chr3               60066843 971 -  91889043 I
e aotNan1.NW_018503298v1       469756 1528 +   3831555 I
e otoGar3.GL873689             491386 1008 +   3845361 I
e cebCap1.NW_016107707v1       409389 1732 -   2086007 I
e nomLeu3.chr6               71047099   1 + 121039945 I
e panPan2.chr15              74139698  20 -  99763055 I
e gorGor5.CYUI01000141v1       184446   0 -    281578 C
e colAng1.NW_012115278v1       518411 514 -   4457520 M
e macNem1.NW_012011934v1       529649 1290 +   2379783 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=66983.000000
s hg38.chr15_KI270851v1_alt    219795 23 +    263054 agtggcacgatcttggctcacca
s panTro5.chr15               9612992 23 +  83230942 agtggcacgatcttggctcacca
i panTro5.chr15             C 0 C 0
s nomLeu3.chr6               71047100 23 + 121039945 agtggcatgatcttagctcacca
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr7              164356053 23 - 169600520 agtgacacgatcttggctcactg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165677382 23 - 171882078 agtgacacgatcttggctcactg
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       488658 23 +   4116138 agtgacacgatcttggctcactg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53919439 23 +  58131712 agtgacacgatcttggctcactg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       541088 23 -   3636681 agtgacacgatcttggctcactg
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154552981 23 - 158406734 aatggcgcgatctcggctcaccg
i calJac3.chr6              C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             449477  0 +    563711 C
e canFam3.chr3               60066843 971 -  91889043 I
e aotNan1.NW_018503298v1       469756 1528 +   3831555 I
e otoGar3.GL873689             491386 1008 +   3845361 I
e cebCap1.NW_016107707v1       409389 1732 -   2086007 I
e panPan2.chr15              74139698 20 -  99763055 I
e gorGor5.CYUI01000141v1       184446  0 -    281578 C
e colAng1.NW_012115278v1       518411 514 -   4457520 M
e macNem1.NW_012011934v1       529649 1290 +   2379783 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=200342.000000
s hg38.chr15_KI270851v1_alt    219818 53 +    263054 caacctctgcctcccgggttcaagcgattctcctgtctcagcctcccaagtat
s panTro5.chr15               9613015 53 +  83230942 caacctctgcctcccgggttcaagtgattctcctgtctcagcctcccaagtat
i panTro5.chr15             C 0 C 0
s nomLeu3.chr6               71047123 53 + 121039945 cagcctctgcctgccgggttcaagcgattctcctgcctccgcctcccgagtag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164356076 53 - 169600520 caacttctgcctcctgggttcaagcgattctcctgcctcagcctcccgggtag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165677405 53 - 171882078 caacttctgcctcctgggttcaagcgattctcctgcctcagcctcccgggtag
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       488681 53 +   4116138 caacctctgcctcctgggttcaagcgattctcctgcctcagcctcccgggtag
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53919462 53 +  58131712 caacctctgcctcctgggttcaagtgattctcctgcctcagcctcctgggtag
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       541111 53 -   3636681 caacctctgcctcctgggttcaagcgattctcctgcctcagcctcccgggtag
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       518925 53 -   4457520 caacctccgcctcctgggttcaagcgattctcctgcctcagcctcccgggtag
i colAng1.NW_012115278v1    M 514 C 0
s calJac3.chr6              154553004 53 - 158406734 caacctccacctcctgggttcaggcaattctcctgcctcagcctcctgagtag
i calJac3.chr6              C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             449477  0 +    563711 C
e canFam3.chr3               60066843 971 -  91889043 I
e aotNan1.NW_018503298v1       469756 1528 +   3831555 I
e otoGar3.GL873689             491386 1008 +   3845361 I
e cebCap1.NW_016107707v1       409389 1732 -   2086007 I
e panPan2.chr15              74139698 20 -  99763055 I
e gorGor5.CYUI01000141v1       184446  0 -    281578 C
e macNem1.NW_012011934v1       529649 1290 +   2379783 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=305076.000000
s hg38.chr15_KI270851v1_alt    219871 71 +    263054 ctgggattacagacatgcacca-catgcctggttaa--ttttatatttttagtagagacagggtttattcatgt
s panTro5.chr15               9613068 71 +  83230942 ctgggattacagacatgcacca-catgcctgcttaa--ttttatatttttagtagagacagggtttattcatgt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       184446 71 -    281578 ctgagattacagacatgcacca-catgcctggctaa--ttttatatttttagtagagacagtgtttcttcattt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71047176 71 + 121039945 ctgggattacagacatgtacca-catgcctggttaa--ttttatatttttagtagagacagggtttctccattt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164356129 72 - 169600520 ctgagattacagacatgtaccaccacgcctggttaa--ttttatatttttagtagagacgaggtttctccatgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165677458 72 - 171882078 ctgagattacagacatgtaccaccacgcctggttaa--ttttatatttttagtagagacgaggtttctccatgt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001462v1       488734 72 +   4116138 ctgagattacagacatgtaccaccacgcctggttaa--ttttatatttttagtagagacgaggtttctccatgt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53919515 72 +  58131712 ctgagattacagacatgtaccaccacgcctggttaa--ttttatatttttagtagagacgagatttctccatgt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       541164 72 -   3636681 ctgagattacagacatgtaccaccacgcctggttaa--ttttatatttttagtagagacgaggtttctccatgt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       518978 72 -   4457520 ctgagattacagacatgcaccaccacgcctggttaa--ttttatatttttagtggagacgaggtttctccatgt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154553057 74 - 158406734 ctgggattacaggcacgcgccaccatgcccagctaatcttttgtatttttagtagagatggggtttcaccatgt
i calJac3.chr6              C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             449477  0 +    563711 C
e canFam3.chr3               60066843 971 -  91889043 I
e aotNan1.NW_018503298v1       469756 1528 +   3831555 I
e otoGar3.GL873689             491386 1008 +   3845361 I
e cebCap1.NW_016107707v1       409389 1732 -   2086007 I
e panPan2.chr15              74139698 20 -  99763055 I
e macNem1.NW_012011934v1       529649 1290 +   2379783 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=1368128.000000
s hg38.chr15_KI270851v1_alt    219942 273 +    263054 tggtcaggctggtctcgaactcttgacctcaggtgatccacctgccttggcctcccaaagtgctgggattataggcgtgagccaccatgcccatcctggagtctcttcttataaagaccctaatcctgttgtgtcagagccccactcttatgacctgattttaccttaatgacttccttagaggccccatctcctaatactgccacattaggagtcgggacttcatgaatttt----gcggggggg-atacaaacattcatttcatagtaaccctcct
s panTro5.chr15               9613139 253 +  83230942 tggtcaggctggtctcgagctcctgacctcaggtga---------------------aagtgctgggattataggcgtgagccaccatgcccatcctggagtctcttcttataaagaccctaatcctgttgtgtcagaggcccactcttatgacctgattttaccttaatgacttccttagaggccccgtctcctaatactgccacattaggagtcgggacttcatgaatttt----gcggggggggacacaaacattcatttcatagtaaccctcct
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       184517 269 -    281578 ttgtcaggctggtctcgagctcctgacctcaggtgatccgcctgccttggcctcccaaagtgctgggattataggcatgagccaccatgcccatcctggagtctcttcttataaagaccttagtcctgttgtgtcagacgcccactcttatgacctgattttaccttaatgacttccttagaggccccatctcctaatactgccgcattaggagtcgggacttcatgaatttt----ggtgggggggacacaaACA-----TTCATGATAAtcctcct
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71047247 266 + 121039945 tggtcaggctggtctcgaactcctgacctcaggtgatctgcctgccttggcctctcaaagtgctgggattataggcgtgagccaccatgcccatcctggagtctcttcttataaagatcctaatcctgttgtgtcagagccccactcttatgacatgattttaccttaatgacttccttagaggccccttctcctaatactgccacattaggagttgggacttcatgaatttt-------gggggggacacaaACA-----TTCATAATAACCCtcct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164356201 268 - 169600520 tggtcaggctggtctcaaactcctgacctcaggttatctgcccgccttggcctcccaaagtgctgggattacaggcgtgagccactgtgcccggcctggagtc---tcttataaagaccctaatcctgttgggtcagatccccactcttaggacctgattttaccttaatgacctccttagaggccctgtctcctaatacagctacattaggagttgggacttcatgaatttt-------gcgggggacgcaaacattcatttcataGTAACCCTCCt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165677530 268 - 171882078 tggtcaggctggtctcaaactcctgacctcaggttatctgcccgccttggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggcctggagtc---tcttataaagaccctaatcctgttgggtcagatccccactcttaggacctgattttaccttaatgacctccttagaggccctgtctcctaatacagctacattaggagttgggacttcatgaatttt-------gcgggggacgcaaacattcatttcatagtaaccctcct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       530939 268 +   2379783 tggtcaggctggtctcaaactcctgacctcaggttatctgcccgccttggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggcctggagtc---tcttacaaagaccctaatcctgttgggtcagatccccactcttaggacctgattttaccttaatgacctccttagaggccctgtctcctaatacagctacattaggagttgggacttcatgaatttt-------gcgggggacgcaaacattcatttcatagtaACCCTCCt
i macNem1.NW_012011934v1    I 1290 C 0
s cerAty1.NW_012001462v1       488806 268 +   4116138 tggtcaggctggtctcgaactcctgacctcaggttatctgcccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcctggagtc---tcttataaagaccctaatcctgttgggtcagatccccactcttaggacctgattttaccttaatgacctccttagaggccctgtctcctaatacagccacattaggagttgggacttcatgaatttt-------gtgggggacgtaaacattcatttcataGTAACCCTCCt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53919587 267 +  58131712 tggtcaggctggtctcgaactcctgacctcaggttatctgcccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcctggcctggagtc---tcttataaagaccctaatcctgttgggtcagatccccactcttaggacctgattttaccttaatgacctccttagagg-cctgtctcctaatacagccacattaggagttgggacttcatgaatttt-------gcgggggacgcaaacattcatttcatagtaaccctcct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       541236 268 -   3636681 tggtcaggctggtctcgaactcctgacctcaggttatctgcccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcctggagtc---tcttataaagaccctaatcctgttgggtcagatccccactcttaggacctgattttaccttaatgacctccttagaggccctgtctcctaatacagccacattaggagttgggacttcatgaatttt-------gtgggggacgcaaacattcatttcataGTAACCCTCCt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       519050 267 -   4457520 tggtcaggctggtctggatctcctgacctcaggttatctgcctgccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggtcTGATGtc---tcttataaagaccctaatcctgttgggtcagatctccactcttaggacctgattttaccttaatgacctccttagaggccctgtctcctaatacagccacattaggagttgggacttcatgaatttc-------atgggggacacaaacattcatttcatagtaACCCT-Ct
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154553131 273 - 158406734 tgaccaggatggtctcgatctcttgacctc--gtgatccacccgccccggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggcc--gtgtctcctcttacaaagaccctaatccttttgggtcagagccccactcttatgatgtcattttaccctaattacttccttagaggccctgccttctactacagccacgttaggaattgggacttcatgaattttgcaggcggcgggggagacaaACATTAATTTCGTGATAA-CCTCCT
i calJac3.chr6              C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             449477   0 +    563711 C
e canFam3.chr3               60066843 971 -  91889043 I
e aotNan1.NW_018503298v1       469756 1528 +   3831555 I
e otoGar3.GL873689             491386 1008 +   3845361 I
e cebCap1.NW_016107707v1       409389 1732 -   2086007 I
e panPan2.chr15              74139698  20 -  99763055 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=1717320.000000
s hg38.chr15_KI270851v1_alt    220215 298 +    263054 tctcccttcctctc-ctttcatgctatttatttgtggctgaaaccatgtcctccaa-atgtcttacagtctgcatttggaggtggcttccttg------tggctaacatcttcctctctccctgtttctccaatgcagtaggagttagggttggagggtgattgga-ccaggctgaatctc-aggcaggaagcttc----atag--gcatgtactccctccggccccatctcaacaggcaagcatgtttgggtgggttaggtcttgtcagcctgctccttccttgatgacattctgtattaattgtccatctca
s panTro5.chr15               9613392 298 +  83230942 tctcccttcctctc-ctttcatgctgtttatttgtggctgaaaccatgtcctccaa-atgtcttacaggctgcatttggaggtggcttccttg------tggctaacatcttcctctctccctgtttctccaatacaataggagttagggttggagggtgattaga-ccaggctgaatctc-aggcaggaagcttc----atag--gcgtgtactccttccggccccatctcaacaggcaagcaggtttgggtgggttaggtcttgtcagcctgctccttccttgatgacattctgtattaattgtccatctca
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       184786 298 -    281578 tcccccgtcctctc-cttttatgctgtttatttgtggctgaaaccatgtcctccaa-atgtcttacagtcttcatttggtggtggcttccttg------tggctaacatcttcctctctccctgtttctccaatacaataggagttagggttggagggtgattgga-ccaggctgaatctc-aggcaggaagcttc----atag--gcatgtactccctccggccccatctcaacaggcaagcaggtttgggtgggttaggtcttgtcagtctgcttcttccttgatgacattctgtattaattgtccatctct
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71047513 298 + 121039945 tcccccatcctctc-ctttcatgctatttatttgtggctgaaaccatgtcctccaa-atgtcttacagtccgcatttggtggtggcttccttg------tggctaacatcttcctctctccctgtttctccaatacagtaggagttagggttggagggtgattgga-ccaggctgaatctc-aggcaggaagcttc----gtag--gcatgtactccctccagccccatctcaacaggcaagcaggtttgggtgggttgggtcttgtcagcctgctccttccttgatgacattctgtattaattgtccatctca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164356469 304 - 169600520 tctcccttcctctc-ctttcatgctgtttatttgtgggtgaaactatgtcttccga-atgtcttatagtctggattgggtgggggcttccttgtggtggtggctaacatcttcttctctccctgtttctccaatacagtaggagttagggttgaagggtggttgga-ccaggctgaatctc-aggcaggaagcttc----atag--gcatgtactccctcctgccccttctcaacaggcaaacaggtttgggtgggtgaggtcttgtcagcctgctccttccttgatgacattctgtattaattgtccatctca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165677798 304 - 171882078 tctcccttcctctc-ctttcatgctgtttatttgtgggtgaaactatgtcttccga-atgtcttatagtctggattgggtgggggcttccttgtggtggtggctaacatcttcttctctccctgtttctccaatacagtaggagttagggttgaagggtggttgga-ccaggctgaatctc-aggcaggaagcttc----atag--gcatgtactccctcctgccccttctcaacaggcaaacaggtttgggtgggtgaggtcttgtcagcctgctccttccttgatgacattctgtattaattgtccatctca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       531207 304 +   2379783 tctcccttcctctc-ctttcgtgctgtttatttgtgggtgaaactatgtcttccga-atgtcttatagtctggattgggtgggggcttccttgtggtggtggctaacatcttcttctctccctgtttctccaatacaataggagttagggttgaagggtggttgga-ccaggctgaatctc-aggcaggaagcttc----atag--gcatgtactccctcctgccccttctcaacaggcaaacaggtttgggtgggtgaggtcttgtcagcctgctccttccttgatgacattctgtattaattgtccatctca
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       489074 304 +   4116138 tctcccttcctctc-ctttcatgctgtttatttgtgggtgaaactatgtcttccga-atgccttatagtctggattgggtgggggcttccttgtggtgttggctaacatcttcttctctccctgtttctccaatacagtaggagttagggttggagggtggttgga-ccaggctgaatctc-aggcaggaagcttc----atag--gcatgtactccctcctgccccttctcaacaggcaaacaggtttgggtgggtgaggtcttgtcagcctgctccttccttgatgacattctgtattaattgtccatctca
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53919854 302 +  58131712 tctcccttcctctc-ctttcatgctgtttatttgtgggtgaaac--tgtcttctga-atgtcttatagtctggattgggtggtggcttccttgtggtgttggctaacatcttcttctctccctgtttctccaatacagtaggagttagggttggagggtggttgga-ccaggctgaatctc-aggcaggaagcttc----atag--gcatgtactccctcctaccccttctcaacaggcaaacaggtttgggtgggtgaggtcttgtcagcctgctccttccttaatgacattctgtattaattgtccatctca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       541504 300 -   3636681 tctcccttcctctc-ctttcatgctgtttatttgtgggtgaaactatgtcttccga-atgtcttatagtctggattgggtgggggcttccttgtggtgttggctaacatcttcttctctccctgtttctccaatacagtaggagttagggttggagggtggttgga-ccaggctgaatct-----caggaagcttc----atag--gcatgtactccctcctgccccttctcaacaggcaaacaggtttgggtgggtgaggtcttgtcagcctgctccttccttgatgacattctgtattaattgtccatctca
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       519317 300 -   4457520 tctcccttcctctc-ctttcatgctgtttatttgggggtgaaactatgtcttccaa-atgtcttatagtctggattgggtggtggcttccttgtggtgttgggtaacatcttcctgtctccctgtttctccaatacagta----ttagggttggagggtggttgga-ccaggctgaatctc-aggtaggaagcttc----atag--gcatgtactccctcctgccccttctcaacaggcaaacaggtttgggtgggtgaggtcttgtcagcctgctccttccttgatgacattctgtattaattgtccatctca
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154553404 304 - 158406734 TCCCCCTTCCTCTC-CTGTCGTGCTGTCTGTCTGTGGCTGAAACTGTGTGCTCCAA-ATGtctcacagtctgggtttagtggtggcccccttgtggtggtggctgacatcttcctctctccctgtttctccagtgaagtaggagttagggttggaggGTGATTGGA-CCCTGGCTGATCTC-AGGCAGGAAGCTTT----GTAG--GCACGCACTCCCTCCTGCCCCATCTCAACAGGCAAGCAGTGTTGGGTGGGTTGGGTCTTGTCAGTCTGCTCCTTCCTTGATGAAATTCCATATTAATTGCTCATCTCA
i calJac3.chr6              C 0 C 0
s dasNov3.JH562051             449477 301 +    563711 tcccacttcctctctttttcatgccacttatttgtggctgaaactatatcctcaagcatgtcttagtttctagattgggctgtggcctcctgctgg---agtctgacatcttgctctgtgcctgtattttttgtgaggcaggtattagagctg-agggtgcctagattcaagcggagccttgagccagaatgctcctgaaatggcagcacattctccctgctg--ttgtactaactttaacgttgatt--ggtgggttaggg-ttgtcatcctg----ttccattgtgaagttctccattattttttcattcga
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e canFam3.chr3               60066843 971 -  91889043 I
e aotNan1.NW_018503298v1       469756 1528 +   3831555 I
e otoGar3.GL873689             491386 1008 +   3845361 I
e cebCap1.NW_016107707v1       409389 1732 -   2086007 I
e panPan2.chr15              74139698  20 -  99763055 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=188453.000000
s hg38.chr15_KI270851v1_alt    220513 27 +    263054 tagctccagcaggcattagt-gtcatca
s panTro5.chr15               9613690 27 +  83230942 tagctccaacaggcattagt-gtcatca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74139718 27 -  99763055 TAGCTCCagcaggcattagt-gtcatca
i panPan2.chr15             I 20 C 0
s gorGor5.CYUI01000141v1       185084 27 -    281578 tagctccagtaggcattagc-gtcatca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71047811 27 + 121039945 tagctccagtaggcattagt-gtcatca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164356773 27 - 169600520 tagctccagtaggcattagt-gtcatca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165678102 27 - 171882078 tagctccagtaggcattagt-gtcatca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       531511 27 +   2379783 tagctccagtaggcattagt-gtcatca
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       489378 27 +   4116138 tagctccagtaggcattagt-gtcatca
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53920156 27 +  58131712 tagctccggtaggcattagt-gtcatca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       541804 27 -   3636681 tagctccagtaggcattagt-gtcatca
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       519617 20 -   4457520 tagt-------ggcattagt-gtcatca
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154553708 27 - 158406734 TAGCTCCagtaggcattggt-gtcatca
i calJac3.chr6              C 0 C 0
s dasNov3.JH562051             449778 28 +    563711 tagcttcactagacttttgtggtcatca
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e canFam3.chr3               60066843 971 -  91889043 I
e aotNan1.NW_018503298v1       469756 1528 +   3831555 I
e otoGar3.GL873689             491386 1008 +   3845361 I
e cebCap1.NW_016107707v1       409389 1732 -   2086007 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=1896437.000000
s hg38.chr15_KI270851v1_alt    220540 266 +    263054 cctagacc-----------------------------tatcattaggggctgcaccatagtgattttctaact---tcatc---tt---ctctgagttca---------------------------------------------------------------------------------------ttagctggaattctcttctgtgaaaaaaagctttgttattaatcttggttgctcttgataatacag--------ggaga--------------------------------c-ttcatcagttttcacaatgatgcattggtgttctgatatgtataaagatgaccaggaagctttgttttccttatt----gtcatgatgaccaatccattggctt-ttagggtgtgatgt--ctccactgttat-----attttt
s panTro5.chr15               9613717 266 +  83230942 cctagacc-----------------------------tatcattaggggctgcaccatagtgattttctaact---tcatc---tt---ctctgagttca---------------------------------------------------------------------------------------ttagctggaattctcttctgtgaaaaaaagctttgttattaatcttggttgctcttgataatacag--------ggaga--------------------------------c-ttcatcagttttcacaatgatgcattgctgttctgatatgtataaagatgaccaggaagctttgttttccttatt----atcatgatgaccaatccattggctt-ttagggtgtgatgt--ctccactgttat-----atttct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74139745 266 -  99763055 tctagacc-----------------------------tatcattaggggctgcaccatagtgattttctaact---tcatc---tt---ctctgagttca---------------------------------------------------------------------------------------ttggctggaattctcttctgtgaaaaaaagctttgttattaatcttggttgctcttgataatacag--------ggaga--------------------------------c-tttatcagttttcagaatgatgcattggtgttctgatatgtataaagatgaccaggaagctttgttttccttatt----atcatgatgaccaatccattggctt-ttagggtgtgatgt--ttccactgttat-----gtttct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       185111 296 -    281578 tctagaccaatgatctagactaatgatctagaccctagatcattaggggctgcaccatagtgattttctaact---tcatc---tt---ctctgagttca---------------------------------------------------------------------------------------ttagctggaattctcttctgtgaaaaaaagctttgttattaatcttggttgctcttgataatacag--------ggaga--------------------------------cttttatcagttttcagaatgatgctttggtgttctgatatgtataaagatgaccaggaagctttgttttccttatt----atcatgatgaccaatccattggctt-ttagggtgtgatgt--tttcactgttat-----gttttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71047838 266 + 121039945 cctagacc-----------------------------tatcattaggggctgcaccatagtgattttctaact---tcatc---tt---ttctgagttcg---------------------------------------------------------------------------------------ttagccggaattctcttctgtgaaaaaaagctttgttattaatcttggttactcttgataatacag--------agaga--------------------------------c-tttgtcagttttcagaatgatgcattggtgttctgatatgtataaagatgaccaggaagctttgttttccttatt----atcatgatgaccaatccattggctt-ttagggtgtgatgt--ttccactgttac-----gttttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164356800 266 - 169600520 cctagacc-----------------------------tatcattaggggctgcaccatagtgattttctaact---tcatc---tt---ttctgagttcg---------------------------------------------------------------------------------------ttagctggaattctcttctgggaaaaaaagctttgttattaatcttggttactcttgataatacag--------ggaga--------------------------------c-tttatcagttttcagaatgatgcattggtgttctgctatgtataaagatgaccagcaagctttgttttccttatt----atcatgatgaccaatccattggctt-ttagggagtgatgt--ttccactgttac-----gttttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165678129 266 - 171882078 cctagacc-----------------------------tatcattaggggctgcaccatagtgattttctaact---tcatc---tt---ttctgagttcg---------------------------------------------------------------------------------------ttagctggaattctcttctgggaaaaaaagctttgttattaatcttggttactcttgataatacag--------ggaga--------------------------------c-tttatcagttttcagaatgatgcattggtgttctgctatgtataaagatgaccagcaagctttgtttTCCTTATT----ATCATGATGACCAATCCATTGGCTT-TTAGGGAGTGATGT--TTCCACTGTTAC-----GTTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       531538 266 +   2379783 cctagacc-----------------------------tatcattaggggctgcaccatagtgattttctaact---tcatc---tt---ttctgagttcg---------------------------------------------------------------------------------------ttagctggaattctcttctgggaaaaaaagctttgttattaatcttggttactcttgataatacag--------ggaga--------------------------------c-tttatcagttttcagaatgatgcattggtgttctgctatgtataaagatgaccagcaaggtttgttttccttatt----atcatgatgaccaatccattggctt-ttagggagtgatgt--ttccactgttac-----gttttt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       489405 266 +   4116138 cctagacc-----------------------------tatcattaggggctgcaccatagtgattttctaact---tcatc---tt---ttctgagttcg---------------------------------------------------------------------------------------ttagctggaattctcttctgggaaaaaaagctctgttattaatcttggttactcttgataatacag--------ggaga--------------------------------c-tttatcagttttcagaatgatgcattggtgttctgctatgtataaagatgaccagcaagctttgttttccttatt----atcatgatgaccaatccattggctt-ttagggagtgatgt--ttccactgttac-----gttttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53920183 266 +  58131712 cctagacc-----------------------------tatcgttaggggctgcaccatagtgattttctaact---tcatc---tt---ttctgagttca---------------------------------------------------------------------------------------ttagctggaattctcttctgggaaaaaaagctttgttattaatcttggttactcttgataatacag--------ggaga--------------------------------c-tttaccagttttcagaatgatgcattggtgttctgctatgtataaagatgacctgcaagctttgtttTCCTTATT----ATCATGATGACCAATCCATTGGCTT-TTAGGGAGTGATGT--TTCCACTGTTAG-----GTTTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       541831 266 -   3636681 cctagacc-----------------------------tatcattaggggctgcaccatagtgattttctaact---tcatc---tt---ttctgagttcg---------------------------------------------------------------------------------------ttagctggaattctcttctgggaaaaaaagctctgttattaatcttggttactcttgataatacag--------ggaga--------------------------------c-tttatcagttttcagaatgacgcattggtgttctgctatgtatacagatgaccagcaagctttgttttccttatt----atcatgatgaccaatccattggctt-ttagagagtgatgt--ttccactgttac-----gttttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       519637 265 -   4457520 cctagacc-----------------------------tataattaggggctgcaccatagtgattttctaact---tcatc---tt---ttctgagttcg---------------------------------------------------------------------------------------ttagctggaattctcttctgggaaaaaaagctttgttattaatcttggttactgttgataatacag--------ggaga--------------------------------c-ttgatcagttttcagaatgatgcattggtgttccgctatgtataaagatgaccaggaagctttgtttTCCTTATT----GTCATGATGACCAATCC-TTGGCTT-TTAGGGTGTGATGT--TTCCACTGTTAT-----GTTTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154553735 260 - 158406734 ccgagacc-----------------------------tatcattaggggctgcaccatagtgattttccaact---tcatcatatt---ttctGACTTCA---------------------------------------------------------------------------------------------GGAGTTCTCTTCGGTGAAAAAAAGCTTGGTTATTAATCCTGGTTAGTCTTGAAAATACAG--------GGAGA--------------------------------T-TTTATCAGTTTTTAGAATGATGCATTGGTGTTCTGATGTGTATAAAGATGATCAGGAAGCTTTGTTTTCCTTATT-------ATGATGACCAATTCTTTGGCTT-TTAGGGTTTCATGT--TTCCACTGttat-----ttattt
i calJac3.chr6              C 0 I 319
s otoGar3.GL873689             492394 353 +   3845361 cctagacc-----------------------------catcatgagagacttccccatagtgattttctaactttgtcatc---ct---ttctgaatttaGCTcaatggttctcaaccttcctcatgccacagcactttaatacagttcttgtgggtcacacaacccacaggttgagaactgctAATTGAGCTGGAGTTCTCTTCAGTGAAGAAAA-CTATTTTATGAACCCTGGTTACTCTTTATAACACAG--------GGAGG--------------------------------C-TTTATTAATTTTCAGAATGATCTGCTGGGGATACGATGCTTATAAAAGTGACCAGGATGCTTTGTGTG-CTTATT----ATCGTGATA---CATTCATGGGCTC-TTAGAACTGGATATGGGTCAGCTGTTAT-----TCCTTT
i otoGar3.GL873689          I 1008 C 0
s dasNov3.JH562051             449806 296 +    563711 -----------------------------------------cctaggggtcatgtgatggtggctttctaatt---ttgtt---ctcacttccaaattta---------------------------------------------------------------------------------------t---ctggatctctgtttggtaaagaaaa-ttttcttatgaaatctgcttaacctttctaataaagtttgtacaggaaaggcagaatgcttgctattaaaaaaaaatttttt-ttaatgagttttctgaatga---gttggtgtcctgatgcttacaaaggtgaacacgaagctttgtttggcttgttgaatatcatg------aatttattgacttcttagtattcaatgtgtttcagccattgcaatcaactttt
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e canFam3.chr3               60066843 971 -  91889043 I
e aotNan1.NW_018503298v1       469756 1528 +   3831555 I
e cebCap1.NW_016107707v1       409389 1732 -   2086007 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=94392.000000
s hg38.chr15_KI270851v1_alt    220806 15 +    263054 gatgatcagggaatc
s panTro5.chr15               9613983 15 +  83230942 gatgatcagggaatc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74140011 15 -  99763055 gatgatcagggaatc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       185407 15 -    281578 gatgatcagggaatc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71048104 15 + 121039945 gatgatcagggaatc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164357066 15 - 169600520 gatgatcagaggatg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165678395 15 - 171882078 GATGATCAGAGGATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       531804 15 +   2379783 gatgatcagaggatg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       489671 15 +   4116138 gatgatcagaggatg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53920449 15 +  58131712 GATGATCAGAGGATG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       542097 15 -   3636681 gatgatcagagggtg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       519902 15 -   4457520 GATGATCAGAGGATG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154554314 15 - 158406734 GATGACCAGAGAATC
i calJac3.chr6              I 319 I 13
s otoGar3.GL873689             492747 13 +   3845361 --GGATGTGGGAgtg
i otoGar3.GL873689          C 0 I 2
s dasNov3.JH562051             450102 15 +    563711 aatgattaaattgtc
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e canFam3.chr3               60066843 971 -  91889043 I
e aotNan1.NW_018503298v1       469756 1528 +   3831555 I
e cebCap1.NW_016107707v1       409389 1732 -   2086007 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=1195127.000000
s hg38.chr15_KI270851v1_alt    220821 135 +    263054 cttttgagt---------aatctttgaaagctcccttcctttatgatacaagttgatccagcctcttcctgtatatttcctgcctgagacacaaagccagacagtgttctaaagagtttctcttccctttatcattaaataata
s panTro5.chr15               9613998 144 +  83230942 cttttgagtgaacccagtaatctttgaaagctcccttcctttgtgacacaagttgatccagcctcttcctgtatatttcctgcctgagacacaaagccagacagtgttctaaagagtttctcttccctttatcattaaataata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74140026 144 -  99763055 ctttcgagtgaacccagtaatctttgaaagctcccttcctttatgacacaagttgatccaggctcttcctgtatatttcctgcctgagacacaaagccagacagtgttctaaagagtttctcttccctttatcattaaataata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       185422 144 -    281578 cttttgagtgaacccagtaatctttgaaagctcccttccttgatgacacaagttgatccaccctcttcctgtatatttcctgcctgagacacaaagccagacagtgttctaaagagtttctgttccctttatcattaaataata
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71048119 144 + 121039945 cttttgagtgaacccagtaatctttgaaagctcccttcctttatgacacaagttgatccaggctcttcctgtatatttcctgcctgagacacaaagccagacagtgttctaaagagtttctgttccctttagcattaaataata
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164357081 144 - 169600520 cttttgagtgaacctggtaatctttgaaagctctcttgctgtatgacacaagttgatccaggctcttcctatatatttcctgcctgagacacaaagccagccagttttttaaagagtttctcttcactttagcattaaataata
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165678410 144 - 171882078 cttttgagtgaacctggtaatctttgaaagctctcttgctgtatgacacaagttgatccaggctcttcctatatatttcctgcctgagacacaaagccagccagttttttaaagagtttctgttcactttagcattaaataata
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       531819 144 +   2379783 cttttgagtgaacctggtaatctttgaaagctctcttgctgtatgacacaagttgatccaggctcttcctatatatttcctgcctgagacacaaagccagccagtttttaaaagagtttctgttcactttagcattaaataata
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       489686 144 +   4116138 cttttgagtgaacctggtaatctttgaaagctctcttgctttatgacacaagttgatccaggctcttcctatatatttcctgcctgagacacaaagccagccagttttttaaagagtttctgttcactttagcattaaataata
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53920464 144 +  58131712 cttttgagtgaacctggtaatctttgaaagctctcttgctttatgacacaagttgatccaggctcttcctatatatttcctgcctgagacataaagccaggcagttttttaaagagtttctgttcactttagcattaaataata
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       542112 144 -   3636681 gttttgagtgaacctggtaatctttgaaagctctcttgctttatgatacaagttgatccaggcttttcctatatatttcctgcctgagacacaaagcctgccagtgttttaaagagtttctgttcactttagcattaaataata
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       519917 144 -   4457520 cttttgagtgaacctcgtaatctttgaaagctctcttgctttatgacacaagttgatccaggctcttcctatatatttcctgcctgagacacaaagccagccagttttctaaagagtttctgttcactttagcattaaataata
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154554342 133 - 158406734 GTTTTGagt---------aatctttgaaagcgcccttgctttatagcacaagttgatccaggttcttcctgtgtatttcctgcttgagacataaaatcagccagttttct--agaatccctgttccctttagcattaaataatg
i calJac3.chr6              I 13 C 0
s aotNan1.NW_018503298v1       471284 133 +   3831555 cttttgagt---------aatctttgaaagcttccttgctttatggcacaagttgatccagattcttcctgtatatttcctgcttgagacataaaaccagccagttttct--agaatccctgttccttttagcattaaataatg
i aotNan1.NW_018503298v1    I 1528 C 0
s otoGar3.GL873689             492762 143 +   3845361 cttttgag-gaattcagtgatctctgatgacttccttgctttgtggcaaaaggcaatccaggcttatcttgtctgtttcctacctgagacatagaaccaaccagttttctaaagagccacagttccatttagcattaagtgata
i otoGar3.GL873689          I 2 C 0
s dasNov3.JH562051             450117 136 +    563711 cttttgagtgaaccctttaatctttcatagctcctttgctttatggcacaagtttgtccaggttcaatttgtgtatttcctgccccagacatagaacca-tcatttttctaaagagtcttggtcc-------cattaaagggta
i dasNov3.JH562051          C 0 I 35
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e canFam3.chr3               60066843 971 -  91889043 I
e cebCap1.NW_016107707v1       409389 1732 -   2086007 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=282743.000000
s hg38.chr15_KI270851v1_alt    220956 40 +    263054 cttagaatgcactctgggtgctagATGAAAttc---ttt--tttt
s panTro5.chr15               9614142 40 +  83230942 cttagaatgcactctgggtgctagATGAAATTC---ttt--tttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74140170 40 -  99763055 cttagaatgcactctgggtgctagATGAAAttc---ttt--tttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       185566 40 -    281578 cttagaatgcactctgggtgctagATGAAAttt---ttt--tttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71048263 40 + 121039945 cttagaatgcactctgagtgctagATGAAAttc---ttt--tttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164357225 40 - 169600520 ctgaaaacgcactctgggtgctagATGAAAttc---ttc--tttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165678554 40 - 171882078 ctgaaaacgcactctgggtgctagATGAAAttc---ttc--tttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       531963 40 +   2379783 cttaaaacgcactctgggtgctagATGAAAttc---ttc--tttt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       489830 40 +   4116138 cttaaaacgcactctgggtgctagATGAAAttc---ttc--tttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53920608 42 +  58131712 cttagaacgcactctgggtgctagATGAAAttc---ttctttttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       542256 40 -   3636681 cttaaaacgcactctgggtgctagATGAAAttc---ttc--tttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       520061 41 -   4457520 cttagaacgcactctgagtgctagATGAAAttc---ttc-ttttt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154554475 40 - 158406734 cttagaatacactctgggtgctaaATGAAAttc---ttg--tttt
i calJac3.chr6              C 0 C 0
s aotNan1.NW_018503298v1       471417 41 +   3831555 cttagaacaca--ctgggtgctaAATGAAAttctttttt--tttt
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             492905 21 +   3845361 ct-------------------tacatgaaattc---ctt--ctta
i otoGar3.GL873689          C 0 I 59
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             450253 35 +    563711 I
e canFam3.chr3               60066843 971 -  91889043 I
e cebCap1.NW_016107707v1       409389 1732 -   2086007 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=372417.000000
s hg38.chr15_KI270851v1_alt    220996 69 +    263054 ttttttttttttttttt-----gagatagggtctcactttgtcactcaggctggagtgcagtggtatgatcttg
s panTro5.chr15               9614182 74 +  83230942 ttttttttttttttttttttttgaggtggggtctcactttgtcactcaggctggagtgcagtggtatgatcttg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74140210 57 -  99763055 ttttt-----------------gagatggggtctcactttgtcactcaggctggagtgcagtggtgtgatcttg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       185606 65 -    281578 ttttttttttttt---------gagatggggtctcactttgtcactcaggctggagtgcagtggtgtgatcttg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71048303 63 + 121039945 ttttttttttt-----------gagatagggtctcactttgtcactcaggctgaagttcagtggtgtgatcttg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164357265 56 - 169600520 tttg------------------gagctggaatctcactttgtcactcaggctggagtacagtggtgtgctcttg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165678594 56 - 171882078 tttg------------------gagctggaatctcactttgtcaatcaggctggagtacagtggtgtgctcttg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       532003 56 +   2379783 tttg------------------gagctggaatctcactttgtcactcaggctggagtacagtggtgtgctcttg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       489870 56 +   4116138 tttg------------------gagctggaatctcactttgtcactcaggctggagtacagtggtgtgctcttg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53920650 56 +  58131712 tttg------------------gagctgggatctcactttgtcactcaggctggagtacagtggtgtgttcttg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       542296 56 -   3636681 tttg------------------gagctggaatctcactttgtcactcaggctgcagtacagtggtgtgctcttg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       520102 54 -   4457520 tttg------------------gagctgggatctcactt--tcactcaggctggagtgcagtggtgtgctcttg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154554515 56 - 158406734 tttt------------------gagatggggtctcactttgtcactcaggctggagtgcagtggtgtgatctca
i calJac3.chr6              C 0 C 0
s aotNan1.NW_018503298v1       471458 56 +   3831555 tttt------------------gagatggggtctcactttgtcactcaggctggagtgcagtggtgcgatctca
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             450253 35 +    563711 I
e canFam3.chr3               60066843 971 -  91889043 I
e otoGar3.GL873689             492926 59 +   3845361 I
e cebCap1.NW_016107707v1       409389 1732 -   2086007 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=817028.000000
s hg38.chr15_KI270851v1_alt    221065 98 +    263054 gctcattgtaacctccaccttccaggctcaagcaatcctctcaactcaagtctcccaagtagctgggaccacaggcatgtgccatcacatctggctaa
s panTro5.chr15               9614256 98 +  83230942 gctcattgtaacctccaccttccaggctcaagcaatcctctcaactcaagtctcccaagtagctgggaccacaggcatgtgccatcacatctggctaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74140267 97 -  99763055 gctcattgtaacctccaccttccaggctcaagcaatcctctcaactc-agtctcccgagtagctgggaccacaggcatgcaccaccacgtctggctaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       185671 97 -    281578 gctcattgtaacctccaccttccaggctcaagcaatcctctcaactc-agtctcccgagtagctcggaccacaggcatgcaccaccacgtctggctaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71048366 97 + 121039945 gctcattgtaacctccaccttctaggctcaagcaatcctctcaactc-ggtctcccgagtagctgggaccacagccatgcaccaccacgtctggctaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164357321 97 - 169600520 gctcattgtaacctccaccttccaggctcaagcaatcctctcaactc-agtcttccaagtagctaggaccacaggcatgcgccaccacgcccggctaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165678650 97 - 171882078 gctcattgtaacctccaccttccaggctcaagcaatcctctcaactc-agtcttccaagtagctaggaccacaggcatgcgccaccacgcccggctaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       532059 97 +   2379783 gctcattgtaacctccaccttccaagctcaagcaatcctctcaactc-agtcttccaagtagctaggaccacaggcatgcgccaccacgcccggctaa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       489926 96 +   4116138 gctcattgtaacctccacctt-caggctcaagcaatcctctcaactc-agtcttacaagtagctaggaccacaggcatgcgccaccacgcccggctaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53920706 97 +  58131712 gctcattgtaacctccaccttccaagctcaagcaatcctctcaactc-agtcttccaagtagctaggaccacaggcatgcgccaccacgcccagctaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       542352 97 -   3636681 gctcattgtaacctccaccttccaggctcaagcaatcctctcaactc-agtcttacaagtagctaggaccacaggcatgcgccaccacgcctggctaa
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       520156 97 -   4457520 attcattgtaacctccaccttccaggctcaagcagtcctctcaactc-agtcttccaagtagctgggaccacagacatgcgccaccacgcccagctaa
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154554571 93 - 158406734 gttcattgtaacat----cttccaggctctagcagtcctctcatttc-agtctcccgagtagctgggaccacaggcatgtgccaccatgcctggctga
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       411121 96 -   2086007 gctcattgtaacctct-ccttccaggctcaagcaaccctctcactgc-agtctcccgagtagctgggaccacaggcatgtgccaccatgcctggccaa
i cebCap1.NW_016107707v1    I 1732 C 0
s aotNan1.NW_018503298v1       471514 96 +   3831555 gctcattgtaacctct-ccttccaggctcaagcaatcctctcacctc-agtctcccgagtagctaggaccacaggcatgtgccaccatgcctggctaa
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             450253 35 +    563711 I
e canFam3.chr3               60066843 971 -  91889043 I
e otoGar3.GL873689             492926 59 +   3845361 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=684276.000000
s hg38.chr15_KI270851v1_alt    221163 86 +    263054 tttttgtatttttgg--tagaggt-gg-gtttcgccatgttgcccaggtttgtctcaaacacctgagctcaagtgatcctcccac-ctcag
s panTro5.chr15               9614354 86 +  83230942 tatttgtatttttgg--tagaggt-gg-gtttcgccatgttgcccaggtttgtctcaaacacctgagctcaagtgatcctcccac-ctcag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74140364 86 -  99763055 tatttgtatttttgg--tagaggt-gg-gtttcgccatgttgcccaggtttgtctcaaacacctgagctcaagtgatcctcccgc-ctcag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       185768 86 -    281578 tttttgtgtttttgg--tagaggt-gg-gtttcgccatgttgcccaggtttgtctcaaacacctgagctcaagtgatcctcccgc-ctcag
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71048463 87 + 121039945 tttttgtatttttgg--tagaagtggg-gtttcaccatgttgcccaggtttgtctcaaacacttgagctcaagcgatcctcccgc-ctcag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164357418 87 - 169600520 tttttgtagttttgg--tggagat-ggcgtttcaccatgttgcccaggtttgtctcaaactcctgagctcaagcgatcctcctgc-ctcag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165678747 87 - 171882078 tttttgtagttttgg--tggagat-ggcgtttcaccatgttgcccaggtttgtctcaaactcctgagctcaagcgatcctcctgc-ctcag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       532156 87 +   2379783 tttttgtagttttgg--tggagat-ggcgtttcaccatgttgcccaggtttgtctcaaactcctgagctcaagcgatcctcctgc-ctcag
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       490022 87 +   4116138 tttttgtagttttgg--tggagat-ggcatttcaccatgttgcccaggtttgtctcaaactcctgagctcaagcgatcctcctgc-ctcag
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53920803 87 +  58131712 tttttgtagttttgg--tggagat-ggcgtttcaccatgttgcccaggtttgtctcaaactcctgagctcaagcgatcctcctgc-ctcag
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       542449 87 -   3636681 tttttgtagttttgg--tggagat-ggcgtttcaccatgttgcccaggtttgtctcaaactcctgagctcaagcgatcctcctgc-ctcag
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       520253 86 -   4457520 -ttttgtagttttgg--tggagat-ggtgtttcaccatgttgcccaggtttgtctcaaacttctgagctcaagcgatcttcctgc-ctcag
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154554664 87 - 158406734 cttttgtatttttgg--tagagat-ggggtttcaccatgtta-ccaggttggtctcaaactcctgagctcaaatgatctgcccccacttgg
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       411217 86 -   2086007 cttttgtatttttgg--tagagat-ggggtttcaccatgttacccaggttggtctcaaactcctgagctcaaatgatctgcccc--cttgg
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       471610 87 +   3831555 cttttgtatttttgg--tagagat-ggggtttcaccatgttacccaggttggtctcaaactcctgagctcaaatgatctgcccgc-cttgg
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             492985 46 +   3845361 tttttgcaatttttggctggggct-gg-gttt------------------------------------------gaacctgccac-ctctg
i otoGar3.GL873689          I 59 I 47
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             450253 35 +    563711 I
e canFam3.chr3               60066843 971 -  91889043 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=377767.000000
s hg38.chr15_KI270851v1_alt    221249 46 +    263054 cctcccaaagtgctaggattacagatgtgagccaccgtgcccagTT
s panTro5.chr15               9614440 46 +  83230942 cctcccaaagtgctaggattacagacgtgagccaccgtgcccggTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74140450 46 -  99763055 cctcccaaagtgctaggattacagacgtgagccaccatgcccagtc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       185854 46 -    281578 cctcccaaagtgctaggattacagacgtgagccaccatgcccagtc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71048550 46 + 121039945 cctcccaaagcactaggattacagacgtgagccaccgtgcccggtc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164357505 46 - 169600520 cctcccaaagtgctaggattacagatgtgagtcaccgtgcccAATC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165678834 46 - 171882078 cctcccaaagtgctaggattacagatgtgagtcaccgtgcccAATC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       532243 46 +   2379783 cctcccagagtgctaggattacagatgtgagtcaccgtgcccAATC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       490109 46 +   4116138 cctcccaaagtgctaggattacagatgtgagccaccgtgcccAATC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53920890 46 +  58131712 cctcccaaagtgctaggattacagatgtgagccactgtgcccAATC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       542536 46 -   3636681 cctcccaaagtgctaggattacagatgtgagccaccgtgcccAATC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       520339 46 -   4457520 cctcccaaagtgctaggattacagatgtgagccaccgtgcccAATC
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154554751 46 - 158406734 cctcccagagtggtaggattacagatctgagccactgtgctgggcc
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       411303 46 -   2086007 cctcccagagtggtagaattacagatctgagcccccgtgTTGCGCC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       471697 46 +   3831555 tctcccagagtggtaggattacagatctgagccactgtgccaggcc
i aotNan1.NW_018503298v1    C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e dasNov3.JH562051             450253 35 +    563711 I
e canFam3.chr3               60066843 971 -  91889043 I
e otoGar3.GL873689             493031 47 +   3845361 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=21409.000000
s hg38.chr15_KI270851v1_alt    221295 3 +    263054 GAA
s panTro5.chr15               9614486 3 +  83230942 GAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74140496 3 -  99763055 AGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       185900 3 -    281578 AGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71048596 3 + 121039945 AGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164357551 3 - 169600520 AAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165678880 3 - 171882078 AAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       532289 3 +   2379783 AAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       490155 3 +   4116138 AAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53920936 3 +  58131712 AAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       542582 3 -   3636681 AAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       520385 3 -   4457520 AAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154554797 3 - 158406734 GAA
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       411349 3 -   2086007 GAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       471743 3 +   3831555 AAA
i aotNan1.NW_018503298v1    C 0 C 0
s dasNov3.JH562051             450288 3 +    563711 gAA
i dasNov3.JH562051          I 35 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e canFam3.chr3               60066843 971 -  91889043 I
e otoGar3.GL873689             493031 47 +   3845361 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=12376.000000
s hg38.chr15_KI270851v1_alt    221298 1 +    263054 A
s panTro5.chr15               9614489 1 +  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74140499 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       185903 1 -    281578 A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71048599 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164357554 1 - 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165678883 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       532292 1 +   2379783 A
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       490158 1 +   4116138 A
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53920939 1 +  58131712 A
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       542585 1 -   3636681 A
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       520388 1 -   4457520 A
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154554800 1 - 158406734 A
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       411352 1 -   2086007 A
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       471746 1 +   3831555 A
i aotNan1.NW_018503298v1    C 0 C 0
s canFam3.chr3               60067814 1 -  91889043 A
i canFam3.chr3              I 971 C 0
s dasNov3.JH562051             450291 1 +    563711 A
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56159587 4077 + 145441459 I
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e otoGar3.GL873689             493031 47 +   3845361 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=37184.000000
s hg38.chr15_KI270851v1_alt    221299 5 +    263054 TTCTT-
s panTro5.chr15               9614490 5 +  83230942 TTCTT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74140500 5 -  99763055 TTCTT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       185904 5 -    281578 TTCTT-
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71048600 5 + 121039945 TTCTT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164357555 5 - 169600520 TTCTG-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165678884 5 - 171882078 TTGTG-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       532293 5 +   2379783 TTCTG-
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       490159 5 +   4116138 TTCTG-
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53920940 5 +  58131712 TTCTG-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       542586 5 -   3636681 TTCTG-
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       520389 5 -   4457520 TTCTT-
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154554801 5 - 158406734 TTCTT-
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107707v1       411353 5 -   2086007 TTCTT-
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       471747 5 +   3831555 TTTTT-
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56163664 5 + 145441459 TTTTT-
i mm10.chr7                 I 4077 C 0
s canFam3.chr3               60067815 5 -  91889043 TCCTT-
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             450292 5 +    563711 -TCTTT
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e otoGar3.GL873689             493031 47 +   3845361 I
e saiBol1.JH378292             383716 1802 -   2682657 I

a score=480181.000000
s hg38.chr15_KI270851v1_alt    221304 54 +    263054 TATTAAGAGTAGAGTAATACTACTTATCATGGCTCATTTCACCTGTGTACATGA
s panTro5.chr15               9614495 54 +  83230942 TATTAGGAGTAGAGTAATACTACTTATCATGGCTCATTTCACCTGTGTACATGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74140505 54 -  99763055 TATTAAGAGTAGAGTAATACTACTTATCATGGCTCATTTCACCTGTGTACATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       185909 54 -    281578 TATTAAGAGTAGAGTAATACTACTTATCATGGCTCATTTCACCTGTGTACGTGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71048605 54 + 121039945 TATTAAGAGTAGAGTAATACTACTTACCATGACTCATTTGACCTGTGTTCATGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164357560 53 - 169600520 TATTAATAATAGAGTAATACCACTTATCATGACTCATTTCACCTGTGTACA-GA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165678889 53 - 171882078 TATTAATAATAGAGTAATACCACTTATCATGACTCATTTCACCTGTGTACA-GA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       532298 53 +   2379783 TATTAATAATAGAGTAATACCACTTATCATGACTCATTTCACCTGTGTACA-GA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       490164 53 +   4116138 TATTAATAATAGAGTAATACCACTTATCATGACTCATTTCACCTGTGTACA-GA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53920945 53 +  58131712 TATTAATAATAGAGTAATACCACTTATCATGACTCATTTCACCTGTGTACA-GA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       542591 53 -   3636681 TATTAATAATAGAGTAATACCACTTATCATGACTCATTTCACCTGTGTACA-GA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       520394 53 -   4457520 TATTAACAATAGAGTAATACCACTTATCATGACTCATTTCACCTGTGTGCA-GA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154554806 51 - 158406734 TATTAAGAATAGAGTAATGCTACTT---ATGGCTCATTTCACCCATGTAGATGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             385518 50 -   2682657 taataataataGAGTAATGCCGC-T---ATGGCTCATTTCACCCATGTACGTGA
i saiBol1.JH378292          I 1802 C 0
s cebCap1.NW_016107707v1       411358 51 -   2086007 TATTAAGAATAGAGTAATGCTACTT---ACGGCTCGTTTCACCCAGGTACATGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       471752 51 +   3831555 CATTAAGAATAGAGTAATGCTACTT---ATGGCTCATTTCACCCATGTACATGA
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56163669 39 + 145441459 TCTGAAGAATAGAG-AATGCTA-----------TTATATCTCTTGTTTAGG---
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60067820 50 -  91889043 TTTTAGAAATAGAATAATGCTCCTTATAATTGTTCATCTTACCTATACAG----
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             450297 52 +    563711 TCTTAAGGATAGAATAATATTATTTATAATAGTATATTTCATCTATGTACAC--
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13538224 1557 +  16154928 I
e otoGar3.GL873689             493031 47 +   3845361 I

a score=17290.000000
s hg38.chr15_KI270851v1_alt    221358 1 +    263054 T
s panTro5.chr15               9614549 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74140559 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       185963 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71048659 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164357613 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165678942 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       532351 1 +   2379783 T
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       490217 1 +   4116138 T
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53920998 1 +  58131712 T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       542644 1 -   3636681 T
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       520447 1 -   4457520 T
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154554857 1 - 158406734 T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             385568 1 -   2682657 T
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       411409 1 -   2086007 T
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       471803 1 +   3831555 T
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13539781 1 +  16154928 T
i proCoq1.NW_012148396v1    I 1557 C 0
s mm10.chr7                  56163708 1 + 145441459 T
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60067870 1 -  91889043 T
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             450349 1 +    563711 T
i dasNov3.JH562051          C 0 C 0
e otoGar3.GL873689             493031 47 +   3845361 I

a score=6959022.000000
s hg38.chr15_KI270851v1_alt    221359 437 +    263054 GGACT-GGATCTCCAA-TTTCATTTTAATTCTAGGT-GGGAATGATGGTTAGATGCTGCCGAACATACGAAGAAGTGTGCGAAGGTGATGTGATGTTGGCAAAGTCATCAAGCTGGACAGAGATGGATTGCATGATCTCAATGTGCAGTGTGACTGGCAGCAGAAAGGGGGCATCTACTGGTTTAGGTACATTCATGTGGAACTTATAGGTGAGCA----------CATTCTTTGTTTAGTGCTTTTACTTTTTCTTAG--AGACAGAATTCCCATA-----AATGAATACTGATTATAATG-ATTTGTTATTGAAATCTGTAGGCTATCCTCCACCAAGAAGTTCTTCTCACATCAAGATTGGTGATAAAGTGCGGGTCAAAGCCTCTGTCACTACACCAAAATACAAATGGGGATCTGTGACTCATCAGAGTGTGGGGGTTGTGAAAGGTAATATC
s panTro5.chr15               9614550 432 +  83230942 GGACT-GGATCTCCAA-TTTCATTTTAATTCTAGGT-GGGAATGATGGTTAGATGCTGTCGAACATACGAAGAAGTGTGCGAAGGTGATGT-----TGGCAAAGTCATCAAGCTGGACAGAGATGGATTGCATGATCTCAATGTGCAGTGTGACTGGCAGCAGAAAGGGGGCATCTACTGGTTTAGGTACATTCATGTGGAACTTAGAGGTGAGCA----------CATTCTTTGTTCAGTGCTTTTGTTTTTTCTTAG--AGACAGAATTCCCATA-----AATGAATACTGATTATAATG-ATTTGTTATTGAAATCTGTAGGCTATCCTCCACCAAGTTCTTCTTCTCACATCAAGATTGGTGATAAAGTGCGGGTCAAAGCCTCTGTCACCACACCAAAATACAAATGGGGATCTGTGACTCATCAGAGTGTGGGGGTTGTGAAAGGTAATATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74140560 431 -  99763055 GGACT-GGATCTCCAA-TTTCATTTTAATTCTAGGT-GGGAATGATGGTTAGATGCTGTCGAACGTATGAAGAAGTGTGCGAAGGTGATGT-----TGGCAAAGTCATCAAGCTGGACAGAGATGGATTGCATGATCTCAATGTGCAGTGTGACTGGCAGCAGAAAGGGGGCATCTACTGGGTTAGGTACATTCATGTGGAACTTATAGGTGAGCA----------CATTCTTTGTTCAGTGCTTTTG-TTTTTCTTAG--AGACAGAATTCCCATA-----AATGAATACTGATTATAATG-ATTTGTTATTGAAATCTGTAGGCTATCCTCCACCAAGTTCTTCTTCTCACATCAAGATTGGTGATAAAGTGCGGGTCAAAGCCTCTGTCACCACACCAAAATACAAATGGGGATCTGTGACTCATCAGAGTGTGGGGGTTGTGAAAGGTAATATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       185964 432 -    281578 GGACT-GGATCTCCAA-TTTCATTTTAATTCTAGGT-GGGAATGATGGTTAGATGCTGCCGAGCGTATGAAGAAGTGTGCGAAGGTGATGT-----TGGCAAAGTCATCAAGCTGGACAGAGATGGATTGCATGATCTCAATGTGCAGTGTGACTGGCAGCAGAAAGGGGGCACCTACTGGGTTAGGTACATTCATGTGGAACTTATAGGTGAGCA----------CATTCTTTGTTCAGTGCTTTTGTTTTTTCTTAG--AGACAAAATTCCCTTA-----AATCAATACTGATTATAATA-ATTTGTTATTGAAATCTGTAGGCTATCCTCCACCAAGTTCTTCTTCTCACATCAAGATTGGTGATAAAGTGCGGGTCAAAGCCTCTGTCACCACACCAAAATACAAATGGGGATCTGTGACTCATCAGAGTGTGGGGGTTGTGAAAGGTAATATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71048660 435 + 121039945 GGACTGGGATCTCCAATTTTCATTTTATTTCTAGGTGGGGAATGATGGTTAGATGCTGCCGAGCATACGAAGAAGTGTGCGAAGGTGATGT-----GGCAAAAGTCATCAAGCTGGACAGAGATGGATTGCATGATCTCAATGTGCAGTGTGACTGGCAGCAGAAAGGAGGCACCTACTGGGTTAGGTACATTCATGTGGAACTTATAGGTGAGCA----------CATTCTTTGTTCAGTACTTTTGCTTTTTCTTAG--AGACAGAATTCCCATA-----AATGGATACTGATTATAATG-ATTTGTTATTGAAATCTGTAGGCTATCCTCCACCAAGTTCTTCTTCTCACATCAAGATTGGTGATAAAGTGCGGGTCAAAGCCTCTGTCACCACACCAAAATACAAATGGGGATCTGTGACTCATCAGAGTGTGGGGGTTGTGAAAGGTAATATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164357614 432 - 169600520 GGACT-GGATGTCCAA-TTTCATTTTAATTCTAGGT-GGGAATGATGGTTAGATGCTGCCGAGCGTATGAAGAAGTATGTGAAGGTGATGT-----TGGCAAAGTCATCAAGCTGGACAGAGATGGATTGCATGATCTCAATGTGCAGTGTGACTGGCAGCAGAAAGGGGGTACTTACTGGGTTAGGTACATTCATGTGGAACTTATAGGTGAGCA----------CATTCTTTGTTCAGTACTTTTGCTTTTTCTTAG--AGACAGAAGTCCCATA-----AATGAATGCTGATTATAATG-ATTTGTTACTGAAATCTGTAGGCTATCCTCCACCAAGTTCTTCTTCTCACATCAAGATTGGCGATAAAGTGCGGGTCAAAGCCTCTGTTGCCACACCGAAATACAAGTGGGGATCTGTGACTCATCAGAGTGTGGGGGTTGTGAAAGGTAATATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165678943 432 - 171882078 GGACT-GGATGTCCAA-TTTCATTTTAATTCTAGGT-GGGAATGATGGTTAGATGCTGCCGAGCGTATGAAGAAGTATGTGAAGGCGATGT-----TGGCAAAGTCATCAAGCTGGACAGAGATGGATTGCATGATCTCAATGTGCAGTGTGACTGGCAGCAGAAAGGGGGTACTTACTGGGTTAGGTACATTCATGTGGAACTTATAGGTGAGCA----------CATTCTTTGTTCAGTACTTTTGCTTTTTCTTAG--AGACAGAAGTCCCATA-----AATGAATGCTGATTATAATG-ATTTGTTACTGAAATCTGTAGGCTATCCTCCACCAAGTTCTTCTTCTCACATCAAGATTGGCGATAAAGTGCGGGTCAAAGCCTCTGTTGCCACACCGAAATACAAGTGGGGATCTGTGACTCATCAGAGTGTGGGGGTTGTGAAAGGTAATATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       532352 432 +   2379783 GGACT-GGATGTCCAA-TTTCATTTTAATTCTAGGT-GGGAATGATGGTTAGATGCTGCCGAGCGTATGAAGAAGTATGTGAAGGCGATGT-----TGGCAAAGTCATCAAGCTGGACAGAGATGGATTGCATGATCTCAATGTGCAGTGTGACTGGCAGCAGAAAGGGGGTACTTACTGGGTTAGGTACATTCATGTGGAACTTATAGGTGAGCA----------CATTCTTTGTTCAGTACTTTTGCTTTTTCTTAG--AGACAGAAGTCCCATA-----AATGAATGCTGATTATAATG-ATTTGTTACTGAAATCTGTAGGCTATCCTCCACCAAGTTCTTCTTCTCACATCAAGATTGGCGATAAAGTGCGGGTCAAAGCCTCTGTTGCCACACCGAAATACAAGTGGGGATCTGTGACTCATCAGAGTGTGGGGGTTGTGAAAGGTAATATT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       490218 432 +   4116138 GGACT-GGATGTCCAA-TTTCATTTTAATTCTAGGT-GGGAATGATGGTTAGATGCTGCCGAGCGTATGAAGAAGTATGTGAAGGCGATGT-----TGGCAAAGTCATCAAGCTGGACAGAGATGGATTGCATGATCTCAATGTGCAGTGTGACTGGCAGCAGAAAGGGGGTACTTACTGGGTTAGGTACATTCATGTGGAACTTATAGGTGAGCA----------CATTCTTTGTTCAGTACTTTTGCTTTTTCTTAG--AGACAGAAGTCCCATA-----AGTGAATGCTGATTATAATG-ATTTGTTACTGAAATCTGTAGGCTATCCTCCACCAAGTTCTTCTTCTCACATCAAGATTGGCGATAAAGTGCGGGTCAAAGCGTCTGTTGCCACACCGAAATACAAGTGGGGATCTGTGACTCATCAGAGTGTGGGCGTTGTGAAAGGTAATATT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53920999 432 +  58131712 GGACT-GGATGTCCAA-TTTCATTTTAATTCTAGGT-GGGAATGATGGTTAGATGCTGCCGAGCATATGAAGAAGTATGTGAAGGCGATGT-----TGGCAAAGTCATCAAGCTGGACAGAGATGGATTGCATGATCTCAATGTGCAGTGTGACTGGCAGCAGAAAGGGGGTACTTACTGGGTTAGGTACATTCATGTGGAACTTATAGGTGAGCA----------CATTCTTTGTTCAGTACTTTTGCTTTTTCTTAG--AGACAGAAGTCCCATA-----AGTGAATGCTGATTATAATG-ATTTGTTATTGAAATCTGTAGGCTATCCTCCACCAAGTTCTTCTTCTCACATCAAGATTGGCGATAAAGTACGGGTCAAAGCCTCTGTTGCCACACCGAAATACAAGTGGGGATCTGTGACTCATCAGAGTGTGGGGGTTGTGAAAGGTAATATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       542645 432 -   3636681 GGACT-GGATGTCCAA-TTTCATTTTAATTCTAGGT-GGGAATGATGGTTAGATGCTGCCGAGCGTATGAAGAAGTATGTGAAGGCGATGT-----TGGCAAAGTCATCAAGCTGGACAGAGATGGATTGCATGATCTCAATGTGCAGTGTGACTGGCAGCAGAAAGGGGGTACTTACTGGGTTAGGTACATTCATGTGGAACTTATAGGTGAGCA----------CATTCTTTGTTCAGTACTTTTGCTTTTTCTTAG--AGACAGAAGTCCCATA-----AATGAATGCTGATTATAATG-ATTTGTTCCTGCAATCTGTAGGCTATCCTCCACCAAGTTCTTCTTCTCACATCAAGATTGGCGATAAAGTGCGGGTCAAAGCCTCTGTGGCCACACCGAAATACAAGTGGGGATCTGTGACTCACCAGAGTGTGGGCGTTGTGAAAGGTAATATT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       520448 432 -   4457520 GGACT-GGATGTCCAA-TTTCGTTTTAATTCTAGGT-GGGAATGATGGTTAGATGCTGCCGAGCGTATGAAGAAGTGTGTGAAGGCGATGT-----TGGCAAAGTCATCAAGCTGGACAGAGATGGATTGCATGATCTCAATGTGCAGTGTGACTGGCAGCAGAAAGGGGGTACCTACTGGGTTAGGTACATTCATGTGGAACTTATAGGTGAGCA----------CATTGTTTGTTCAGTGCTTTTGCTTTTTCTTAG--AGACAGAATTCCTATA-----AATGAAGGCTGATTATAATG-ATTTGTTACTGAAATCTGTAGGCTATCCTCCACCAAGTTCTTCTTCTCACATCAAGATTGGTGATAAAGTGCGGGTCAAAGCCTCTGTTGCCACACCGAAATACAAGTGGGGATCTGTGACTCATCAGAGTGTGGGGGTTGTGAAAGGTAATATT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154554858 432 - 158406734 GGACG-GCATGTCCAA-TTTCATTTGAATCATAGGT-GGGAATGATGGTTCGATGCTGTCGAACATATGAAGAAGTGTGCGAAGGTGACGT-----TGGCAAAGTCATCAAGCTGGACAGAGATGGGTTGCATGACCTCAACGTGCAGTGTGACTGGCAGCAGAAAGGGGGCACCTACTGGGTGAGGTATATTCACGTGGAACTTATCGGTGAGCA----------CATTTTTTCTTCAG-ACTTTTGCTTTTTCTTTG--AGACAGAATTCCCAGA-----AATGAAGGCTGATTATAATGCATTTGTTGTTGAAATCTGTAGGCTACCCTCCACCAAGTTCTTCTTCTCACATCAAGATTGGTGATAAAGTGCGCGTCAAAAGCTCTGTCACCACACCAAAATACAAATGGGGATCTGTGACTCATCAGAGTGTGGGGGTCGTGAAAGGTAATGTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             385569 431 -   2682657 GGACT-GGATGTCCAA-TTT-ATTTGAATTGTAGGT-GGGAATGATGGTTCGATGCTGTCGGACATACGAAGAAGTGTGCGAAGGTGACGC-----TGGCAAAGTCATCAAGCTGGACAGAGATGGGTTGCACGACCTCAATGTGCAGTGTGACTGGCAGCAGAAAGGGGGCACCTACTGGGTTAGGTATATTCATGTGGAACTTATAGGTGAGCA----------CATCGTTTGTTCAG-ACTTTTGCTTTTTCTTTG--AGACAAAATTCCCAGA-----AATGAAGGCTGATTATAATGCGTTTGTTGTTGAAATCCGTAGGCTATCCTCCACCAAGTTCTTCTTCGCACATCAAGATTGGTGATAAAGTGCGGGTCAAAACCTCTGTCACCACACCAAAATACAAGTGGGGATCTGTGACTCATCAGAGTGTGGGGGTCGTGAAAGGTAATAAT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       411410 432 -   2086007 GGACT-GGATGTCCAA-TTTCATTTCAATTGTAGGT-GGGAATGATGGTTCGATGCTGTCGAACATATGAAGAAGTGTGCGAAGGTGACGT-----TGGCAAAGTCATCAAGCTGGACCGAGATGGGTTGCATGACCTCAATGTGCAGTGTGACTGGCAGCAGAAAGGGGGCACCTACTGGGTTAGGTATATTCATGTGGAACTTATAGGTGAGCA----------CATTCTTTGTTCAG-ACTTTTGCTTTTTCTTTC--AGACAGAATTCCCAAA-----AATGAAGGCTGATTATAATGCGTTTGTTGTTGAAATCTGTAGGCTATCCTCCACCAAGTTCTTCTTCTCACATCAAGATTGGTGATAAAGTGCGGGTCAAAACCTCTGTCACCACACCAAAATACAAATGGGGATCTGTGACTCACCAGAGTGTGGGGGTTGTGAAAGGTAATATT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       471804 432 +   3831555 GGACT-GGATGTCCAA-TTTCATTTGAATTATAGGT-GGGAATGATGGTTCGATGCTGTCGAACATATGAAGAAGTGTGCGAAGGTGACGT-----TGGCAAAGTCATCAAGCTGGACAGAGATGGGTTGCATGACCTCAACGTGCAGTGTGACTGGCAGCAGAAAGGGGGCACCTACTGGGTTAGGTATATTCATGTGGAACTTATAGGTGAGCA----------CATTTTTTGTTCAG-ACTTTTGCTTTTTCTTTG--AGACAGAATTCCCGGA-----AATGAAGGCTGATTATAATGCGTTTGTTGTTGAAATCTGTAGGCTATCCTCCACCAAGTTCTTCTTCTCACATCAAAATTGGTGATAAAGTGAGAGTCAAAAGCTCTGTCACCACACCGAAATACAAATGGGGATCTGTGACTCATCAGAGTGTGGGGGTTGTGAAAGGTAATGAT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13539782 408 +  16154928 GGACT-GGATGTTCAA-TTTCATTTCAATTTTAGGT-AGGAATGATGGTTAGATGCTGTCGAACATATGAAGAAGTGTGCGAAGGCGACGT-----GGGCAAAGTCATCAAGCTGGATAGGGATGGATTGCACGACCTCAACGTGCAGTGTGACTGGCAGCAGAAAGGGGGCACCTACTGGGTTAGGTACATTCACGTGGAACTTATAGGTGAGCA----------CATT------------CTTTT--TCTTAATTAG--AG--ACAGTTCCCAGA-----AATGAATGCTAATTATAGTGCATTTA---------TCTCTAGGCTATCCTCCACCAAGTTCTTCTTCTCACATCAAGATTGGTGATAAAGTACGGGTCAAAGCCTCTGTTACCACGCCAAAATACAAATGGGGATCTGTGACTCATCAAAGTGTGGGAGTTGTGAAAGGTAATATT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             493078 432 +   3845361 GGACT-GGATGTTCAA-TTCCATTTTAATTTTAGGT-GGGAATGATGGTTAGATGCTGTCGAACCTACGAAGAAGTCTGTGAAGGAGACGT-----GGGCAAAGTCATCAAGCTGGATAGAGACGGCCTGCATGACCTCAACGTGCAGTGTGACTGGCAGCAGAAAGGGGGCACCTACTGGGTTAGGTACATTCACGTGGAACTGATAGGTGCTCATTCTTTATTGCATTCT---------GCTTTT--TCTTAATTAG--AGACACAGTTCCCAGA-----AATGAATGCTAATTGCATTGCATTTACTTTTGTTGTCTTTAGGCTACCCTCCACCAAGTTCTTCTTCTCACATCAAGATTGGTGATAAAGTACGGGTCAAAGCCTCTGTTACCACTCCAAAATACAAATGGGGGTCTGTGACACATCAAAGCGTGGGGGTTGTGAAAGGTAATATT
i otoGar3.GL873689          I 47 C 0
s mm10.chr7                  56163709 433 + 145441459 GTACT-TGACTTGACT-TTGCATTTCAATTTTAGGT-GGGAATGATGGTGAGATGCTGTCGAACATATGAAGAAGTATGTGAAGGTGATGT-----GGGCAAAGTCATCAAACTGGATAGAGATGGATTACATGACCTTAATGTTCAGTGTGATTGGCAGCAGAAAGGCGGCACTTACTGGGTTAGGTATATTCATGTTGAACTTATAGGTGAGCA----------CATTCCTTGTTAAT--GTATTGCATTTCGT-----AGACACAGTTTCCAGAAAATGAACAAACACTGATCATTGTCCATTTGCCAATAAAACCCTTAGGCTATCCTCCACCAAGTTCTTCTTCTCACATCAAGATCGGTGATAAAGTACGGGTCAAAGCTTCTGTTACCACACCAAAGTACAAGTGGGGATCCGTCACTCATCAAAGTGTGGGGCTTGTGAAAGGTAATATC
i mm10.chr7                 C 0 I 215
s canFam3.chr3               60067871 432 -  91889043 GAATT-GGATTTTTAC-TTTAATTTTAATCTTAGGT-GGGAATGATGGTTAGATGCTGTCGAACATATGAAGAAGTGTGTGAAGGAGATGT-----GGGCAAGGTTATCAAATTGGATAGAGATGGATTACATGACCTCAATGTGCAGTGTGATTGGCAGCAGAAAGGAGGCACTTACTGGGTTAGGTATATTCATGTGGAACTTATAGGTGAGCA----------CATTCTTGAGTAAGTTCTTCTGCTTTTTCTGAAGTAGAGAGAGTTCTCAGG-----AATAAATACTAATTATAGTT---TCCTTATTGTAATCTCTAGGCTATCCTCCACCAAGTTCTCCTTCTCACATAAAGATTGGTGATAAAGTTCGTGTCAAATCTTCAGTCACCACACCGAAATACAAGTGGGGATCTGTGACTCATCAAAGTGTGGGGATTGTGAAAGGTAATATT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             450350 421 +    563711 GAGCT-GCATCTTTA--TTTGATTTTAATTGTAGGT-GGGAATGATGGTTAGATGCTGTCGAACATATGAAGAAGTGTGTGAAGGAGATGT-----GGGCAAAGTTATTAAACTGGACAGAGATGGATTACATGATCTCAATGTTCAATGTGATTGGCAGCAGAAAGGAGGTACCTACTGGGTTAGGTATATTCACGTTGAACTTATAGGTGAGCA----------CATTGTT--------GCATTT--TCTTGATTAG--AGGCTAAGTTCCCAGA-----AATAAATGCTAATT-TAGTGCATTTATTGTTGAAATCTCTAGGTTATCCACCACCAAGTTCTCCTTCTCACATCAAGATTGGTGATAAAGTACGAGTCAAAACCTCAGTAACCACACCAAAATACAAATGGGGATCTGTTACTCATCAAAGTGTGGGGGTTGTGAAAGGTAATATT
i dasNov3.JH562051          C 0 C 0

a score=685654.000000
s hg38.chr15_KI270851v1_alt    221796 55 +    263054 ATCTGGG---TAATTAAATTCCTGATGTTAACTTTTCATTAATGCATA---TGTACTTAGT
s panTro5.chr15               9614982 55 +  83230942 ATCTGGG---TAATTAAATTCCTGATGTTAACTTTTCATTAATGCATA---TGTACTTAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74140991 55 -  99763055 ATCTGGG---TAATTAAATTCCTGATGTTAACTTTTCATTGACGCATG---TGTACTTAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       186396 55 -    281578 ATCTGGG---TAATAAAATTCCTGATGTTAACTTTTCATTAACGCATG---TGTACTTAGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71049095 58 + 121039945 ATCTGGGTGATAATAAAATTCCTGGTGTTAACTTTTCATTAACGCATG---TGTACTTAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164358046 54 - 169600520 ATCTGGG---TAATAAAATTCCTGATGTTAAC-TTTCATTAACGCATG---TGTACTCAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165679375 54 - 171882078 ATCTGGG---TAATAAAATTCCTGATGTTAAC-TTTCATTAACGCATG---TGTACTCAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       532784 55 +   2379783 ATCTGGG---TAATAAAATTCCTGATGTTAACTTTTCATTAACGCATG---TGTACTCTGT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       490650 55 +   4116138 ATCTGGG---TAATAAAACTCCTGATGTTAACTTTTCATTAACGCATG---TGTACTCAGT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53921431 55 +  58131712 ATCTGGG---TAATAAAATTCCTGATGTTAACTTTTCATTAACGCGTG---TGTACTCAGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       543077 55 -   3636681 ATCTGGG---TAATAAAACTCCTGATGTTAACTTTTCATTAACGCATG---TGTACTCAGT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       520880 55 -   4457520 ATCTGGG---TAATAAAATTCCTGATGTTAACTTTTCATTAACGCATG---TGTACTCAGT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154555290 55 - 158406734 ATCTGGG---TAATAAAACTCCTGATGTTAACTTTTTATTAATACACG---CGTACTCAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             386000 55 -   2682657 ATCTGGG---TAATAAAATTCCTGATGTTAACTTGTTGTTAACGCACA---TGTAGTCAGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       411842 55 -   2086007 ATCTGGG---TAATAAAATTCCTGACGTTAACTTTTTATTAATGCACG---TGTACTCAGT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       472236 55 +   3831555 ATCTGGG---TAATAAAATTCCTGATGTTAACTTTTTATCAACGCACG---TGTAGTCAGT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13540190 55 +  16154928 ATCCAGG---CAACAAAATTCCAGATGTTAACTTTTCATTAACTAATG---TGAATTTAGT
i proCoq1.NW_012148396v1    C 0 I 53
s otoGar3.GL873689             493510 52 +   3845361 ATCTAGG---GAACAAAATTCCAGTTGTTAACTTTTCATTAACTAATG---TGAATTT---
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60068303 58 -  91889043 ATCCAGG---CAACAAAATTCCAAATGTTAACTTTTTATCAGCTAATGTAATATACTCATT
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             450771 51 +    563711 GCCTATT---TAACAAAATTCCAAATACTAGCATTACATTA----ATA---TAAACTCAAT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56164142 215 + 145441459 I

a score=464835.000000
s hg38.chr15_KI270851v1_alt    221851 47 +    263054 ATTTCTTTTTGTTCAAGCACACAAAACAGAAAACAAGTG-TGAAGAAA---
s panTro5.chr15               9615037 47 +  83230942 ATTTCTTTTTGTTCAAGCACACAAAACAGAAAACAAGTG-TGAAGAAA---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74141046 47 -  99763055 ATTTCTTTTTGTTCAGGCACACAAAAAAGAAAACAAGTGTTGAAGAA----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       186451 47 -    281578 ATTTCTTTTTGTTCAAGCACACAGAAAAGAAAACAAGTGTTGAAGAA----
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71049153 46 + 121039945 ATTTCTTTTTGTTCAAGCACACAAAA-AGAAAACAAGTG-TGAAGAAA---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164358100 47 - 169600520 ATTTCTTTTTGTTTAAGCACACAAAAAAGAAAACAAGTG-TGAAGAAA---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165679429 47 - 171882078 ATTTCTTTTTGTTTAAGCACACAAAAAAGAAAACAAGTG-TGAAGAAA---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       532839 47 +   2379783 ATTTCTTTTTGTTTAAGCACACAAAAAAGAAAACAAGTG-TGAAGAAA---
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       490705 47 +   4116138 ATTTCTTTTTGTTTAAGCACACAAAAAAGAAAACAAGTG-TGAAGAAA---
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53921486 47 +  58131712 ATTTCTTTTTGTTTAAGCACACAAAAAAGAAAACAAGTG-TGAAGAAA---
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       543132 47 -   3636681 ATTTCTTTTTGTTTAAGCACACAAAAAAGAAAACAAGTG-TGAAGAAA---
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       520935 47 -   4457520 ATTTCTTTTTGTTTAAGCACACAAAAAAGAAAACAAGTG-TGAAGAAA---
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154555345 44 - 158406734 ATTTCTTTTTGTTGAAGCACA---AAAAGAAAACAAGTG-TGAAGAAA---
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             386055 44 -   2682657 ATTTCTTTTTGTTCAAGCACA---AAAAGAAAACACGTG-TGAAGAAA---
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       411897 41 -   2086007 ATTTCTTT---TTCAAGCACA---AAAAGAAAACACGTG-TGAAGAAA---
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       472291 44 +   3831555 ATTTCTTTTTGTTCAAGCACA---AAAAGAAAACAAGTG-TGAAGAAA---
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             493562 34 +   3845361 ------TTTCCTTTATGGGCAAGAAAAAG-------GTG-TGAAGAAG---
i otoGar3.GL873689          C 0 I 7
s canFam3.chr3               60068362 43 -  91889043 TTTTGTTGTTCTTCAAGAGC----AAAGGAAAACAAGTC-TGGAGAAA---
i canFam3.chr3              I 1 I 6
s dasNov3.JH562051             450822 47 +    563711 ATTTTTTTGTATCCAGGCACC---AGGAAAAAATAAATT-TGAAGATTTAT
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56164142 215 + 145441459 I
e proCoq1.NW_012148396v1     13540245 53 +  16154928 I

a score=5331126.000000
s hg38.chr15_KI270851v1_alt    221898 450 +    263054 GAGATAGA----G--------------------------TGTTCCTTTGCTtgtcagtgccttctg-ccaaaggccacaaaggaactcacctgcagtgaa-ac--aatcagatttattaatattaactcattgcagtacaggagaacacacaccttggggaat-ggg-tgtctccat-------------------------cagagggagtgagcgaggactaatgaagtttatgttgggta-tttggggga-ggggtcgagaaagcaggggt----------aatcctaaaacagga-tgtctt-aataa--att-tacc-tagcaggcagaaagaatggagccatgctaac-gtc--atgattggtaagga---agcagtcattcata-tcaccag-gataggggactg----------------tgtggtt--gtttgtggtttggattagactcaacttta---------atcacacatggttaaggaggggttttg---gttgt-gccttgattcat--cagtcacagagtggccttatctgatgttcgtgttctgtaaacttg
s panTro5.chr15               9615084 450 +  83230942 GAGATAGA----G--------------------------TGTTCCTTTGCTtgtcagtgccttctg-ccaaaggccacagaggaactcacctgcagtgaa-ac--aatcagatttattaatattaactcattgcagtacaggagaacacacaccttggggaat-ggg-tgtctccat-------------------------cagagggagtgagcgaggactaatgaagtttatgttgggta-tttggggga-ggggtcgagaaagcaggggt----------aattctaagacagga-tgtctt-aataa--att-tacc-tagcaggcagaaagaacggagccatgctaac-gtc--atgattggtaagga---agcagtcattcata-tcaccag-gataggggactg----------------tgtggtt--gtttgtggtttggattagacttgactttc---------atcacacatggttaaggaggggttttg---gttgt-gccttgattcat--aagtcacagagtggccttatctgatgttcgtgttctgtaaacttg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74141093 449 -  99763055 -AGATAGA----G--------------------------TGTTCCTTTGCTtgtcagtgccttctg-ccaaaggccacagaggaactcacctgcagtgaa-ac--aatcagatttattaatattaactcactgcagtacaggagaacacacaccttggggaat-ggg-tgtctccat-------------------------cagagggagtgagcgaggactaatgaagtttatgttgggtagtttggggga-ggggtcgagaaagca-gggt----------aattctaagacagga-tgtctt-aataa--att-tacc-tagcaggcagaaagaacggagccatgctaac-gtc--atgattggtaagga---agcagtcattcata-tcaccag-gataggggactg----------------tgtggtt--gtttgtggtttggattagacttgactttc---------atcacacatggttaaggacgggttttg---gttgt-gccttgattcat--cagtcacagagtggccttacctgatgttcgtgttctgtaaacttg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       186498 449 -    281578 -AGATAGA----G--------------------------TGTTCCTTTGCTtgtcagtgccttctg-ccaaaggccacagaggaactcacctgcagtgaa-ac--aatcagatttattaatattaactcattgcagtacaggagaacacacaccttggggaat-ggg-tgtctccat-------------------------cagagggagtgagcgaggactaatgaagtttatgttgggta-tttggggga-ggggtcgagaaagcaggggt----------aattctaagacagga-tgtctt-aataa--att-tacc-tagcaggcagaaagaacggagccatgctaac-gtc--atgattggtaagga---agccgtcattcata-tcaccag-gataggggactg----------------tgtggtt--gtttgtggtttggattagacttgactttc---------atcacacatggttaagtaggggttttg---gttgt-gccttgattcat--cagtcacagagtggccttacctgatgttcgtgttctgtaaacttg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71049199 450 + 121039945 GAGATAGA----G--------------------------TGTTCCTTTGCTtgtcagtgccttctg-ccaaaggccacagaggaactcacctgcagtgaa-ac--agtcagatttattaatattaactcattgcagtacaggagaacacacaccttggggaat-ggg-gggctccat-------------------------cagagggaatgagcgaggactaatgaagtttatgttgggta-tttggggga-ggggtcgagaaagcaggggt----------aattctaagacaaga-tgtctt-aataa--att-tacc-tagcaggcagaaagaacggagccatgctaac-atc--atgattggtaagga---agcagtcattcata-tcaccag-gataggggactg----------------tgtggtt--gtttgtggtttggattagactcgacttta---------atcacacatggttaaggaggggttttg---gttgt-gccttgattcat--cagtcacagagtggccttatctgatgttcgtgttctgtaaacttg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164358147 457 - 169600520 GAGATAGA----G--------------------------TGT--TTTTGTTtgtcagtgccttctg-ccaaaggctacagaggaactcacctgcagtgaa-ac--agtcagatttattaatgttaactcattgcagtgcaggagaacacacaccttggggaat-ggg-tgtctccat-------------------------cagagggagtaagcgaggactagtgaagttgatgttgggta-tttggggga-ggggttgaagaagcaggggt----------aattctaagacaggg-cgtctt-aataa--att-tacc-tagcgggcagaaagaatggagccatgctaaa-gtc--atgattggtaagga---agcagtcattcata-tcacca--gataggggactg------tgtggtggtttgtggtt--gtttgtggtttggattagaatcgacttta---------atcatacacggttaaggaggggttttg---gttgt-gccttgatccat--cagtcacagagtggccttatctgatgctggtgttctgtaaacctg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165679476 457 - 171882078 GAGATAGA----G--------------------------TGT--TTTTGTTtgtcagtgccttctg-ccaaaggctacagaggaactcacctgcagtgaa-ac--agtcagatttattaatgttaactcattgcagtgcaggagaacacacaccttggggaat-ggg-tgtctccat-------------------------cagagggagtaagcgaggactagtgaagttgatgttgggta-tttggggga-ggggttgaagaagcaggggt----------aattctaagacaggg-cgtctt-aataa--att-tacc-tagcgggcagaaagaatggagccatgctaaa-gtc--atgattggtaagga---agcagtcattcata-tcacca--gataggggactg------tgtggtggtttgtggtt--gtttgtggtttggattagaatcgacttta---------atcatacacggttaaggaggggttttg---gttgt-gccttgatccat--cagtcacagagtggccttatctgatgctggtgttctgtaaacctg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       532886 457 +   2379783 GAGATAGA----G--------------------------TGT--TTTTGTTtgtcagtgccttctg-ccaaaggctacagaggaactcacctgcagtgaa-ac--agtcagatttattaatgttaactcattgtagtgcaggagaacacacaccttggggagt-ggg-tgtctccat-------------------------cagagggagtaagcgaggactagtgaagttgatgttgggta-tttggggga-ggggttgaagaagcaggggt----------aattctaagacaggg-cgtctt-aataa--att-tacc-tagcaggcagaaagaatggagccatgctaaa-gtc--atgattggtaagga---agcagtcattcata-tcacca--gataggggactg------tgtggtggtttgtggtt--gtttgtggtttggattagaatcaacttta---------atcatacacggttaaggaggggttttg---gttgt-gccttgatccat--cagtcacagagtggccttatctgatgctggtgttctgtaaacctg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       490752 457 +   4116138 GAGAGAGA----G--------------------------TGT--TTTTGCTtgtcagtgccttctg-ccaaaggctacagaggaactcacctgcagtgaa-ac--agtcagatttattaatattaactcattgcagtgcaggagaacacacaccttggggaat-ggg-tgtctccat-------------------------cagagggagtaagcgaggactagggaagttgatgttgggta-tttggggga-ggggttgaagaagcaggggt----------aattctaagacaggg-cgtctt-aataa--att-tacc-tagcaggcagaaagaatggagccatgctaaa-gtc--atgattggtaagga---agcagtcattcata-tcatca--gataggggactg------tgtggtggtttgtggtt--gtttgtggtttggattagaatcgacttta---------atcatacacggttaaggaggggttttg---gttgt-gccttgatccat--cagtcacagagtggccttatctgatgctggtgttctgtaaacctg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53921533 459 +  58131712 GAGATAGA----G--------------------------TGTTCTTTTGCTtgtcagtgccttctg-ccaaaggctacagaggaactcgcctgcagtgaa-ac--agtcagatttattaatattaactcattgcagtgcaggagaacacacaccttggggaat-ggg-tgtctccat-------------------------cggagggagtaagcaaggactagtgaagtttatattgggta-tttggggga-ggggttgaagaagcaggggt----------aattctaagacaggg-tgtctt-aataa--att-tacc-tagcaggcagaaagaatggagccatgctaag-gtc--atgattggtaagga---agcagtcattcata-tcacca--gataggggactg------tgtggtggtttgtggtt--gtttgtggtttggattagaatcgacttta---------atcatacacggttaaggaggggttttg---gttgt-gccttgatccat--cagtcacagagtggccttatctgatgctggtgttctgtaaacttg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       543179 457 -   3636681 GAGAGAGA----G--------------------------TGT--TTTTGCTtgtcagtgccttctg-ccaaaggctacagaggaactcacctgcagtgaa-ac--agtcagatttagtaatattaactcattgcagtgcaggagaacacacaccttggggaat-ggg-tgcctccat-------------------------cagagggggtaagcgaggactagggatgttgatgttgggta-tttggggga-ggggttgaagaagcaggggt----------aattctaagacaggg-cgtctt-aataa--att-tacc-tagcaggcagaaagaatggagccatgctaaa-gtc--atgattggtaagga---agcagtccttcata-tcacca--gataggggactg------tgtggtggtttgtggtt--gtttgtggtttggattagaatcgacttta---------atcatacacggttaaggaggggttttg---gttgt-gccttgatccat--cagtcacagagtggccttatctgatgctggtgttctgtaaacctg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       520982 459 -   4457520 GAGATAGA----G--------------------------TGTTCTTTTGCTtgtcagtgccttctg-ccaaaggctacagaggaactcacctgcagtgaa-ac--agtcagatttattaatattaactcattgccgtgcaggagaacacacaccttggggaat-ggg-tgtctccat-------------------------cagagggagtaagtgaggactaatgaagtttatgttgggta-tttgggggagggggtcgaagaagcaggggt----------aattctaagacgggg-tatctt-actaa--att-tacc-tagcaggcagaaagaatggagccatgctaaa-gtc--gtgattggtgtgga---agcagccattcata-tcacca--gataggggactg------tgtggtggtgtgtggtg--gtctgtggtttggattagaatcgacttca---------atcatacacggtgaagga-gggttttg---gttgt-gccttgatccat--ccgtcacagagtggccttatctgatgctggtgttctgtaaacttg
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154555389 449 - 158406734 GAGGTGGC----G--------------------------TGTCCTTTTGCTGGACAGTGACTTCTC-ccaaagaccacaggagaactcgcctgcagtgaa-aa--agtcagatttattaatattaactcattgcagtgcagggaaacacttaccttggggaat-ggg-tatctccat-------------------------tggagggtgtgagcaaggactaacgaagtttatgttggata-cttagggga-gggttggaggaagcagggat----------aattctgaggtaggg-tgtctt-aataa--att-tacc-tagcaggcagaaagaatggagccaggctgaa-atc--atgttcggtaagga---agcagtcattcata-tcaccag-gatgggggaata----------------tgtggtt---tttgtgatttggattagattcgacctta---------ctcatacatgattaaggaggggttttt---gttgt-gccttgattcat--cagtcacagaggggccttatctgttgttggtgttctgtaaatttg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             386099 430 -   2682657 GAGATAGC----G--------------------------TGTCCTTTTGCTtgacagtgccttcta-ccaaagaccatagaagaacttgcttgcagtgaa-aa--agtcaggtttattgatatt-actcattgcagtgcagggaaacacatgctttggggaat-ggg-tatctccat-------------------------cagagggtgtgagcaaggactaacgaattttaggttggcta-tttggggga-gggttcgaggaagcgggggt----------aattctaagataggg-tgtcct-gataa--att-tacc-tagcaggcagaaagaatggagccaggctgaa-att--atgtttggtacgga---agcagtcattcata-cctccag-gttaggggaatt----------------tgtcgtt--gtttgtgatttggttaagattcgacctta---------atcgtacg----------------------gttgt-gccttgattcat--cagtcacagagtggccttatctgatgctggtgttcagtaaacttg
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       411938 448 -   2086007 GAGATAGC----G--------------------------TGTCCTTTTGATtgacagtgccttcta-ccaaagaccatagaagaacttgcctgcagtgaa-aa--agtcaggtttattaatattaactcattgcagtgcagggaaacacatgccttggggaat-ggg-tatctccat-------------------------cagagggtgtgagcaaggactaatgaagtttatgttggata-tttggggga-gggttcgaggaagcaggggt----------aattctaaggtagcg-tgtctt-aataa--att-tacc-tagcatgcagaaag-atggagccaggctgaa-atc--atatttggtaagga---agcagttattcata-tcaccag-gatggggcaatt----------------tgtggtt--gtttgtgattcggataagactcgaccttg---------atcataca-tgttaaggaggggttttg---gttgt-gccttgattcat--cagtcacagagtggcctcatctgatgctggtgtactgtaaacgtg
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       472335 462 +   3831555 GAGATAGC----G--------------------------TGTCCTTTTGCTtgacagtgccttcta-ccaaagaccacagaagaactcgcctgcagtgaa-aa--agtcagatttattaatattaactcattgcagtgcagggaaacacataccttggggaat-ggg-tatctccatcagagggtgtgagcaaggactaacgcagagggtgtgagcaaggactaacgaagtttatgttggata-tttggggga-gggttcgaggaagcaggggt----------aattttaaggtaggg-tgtctt-aataa--att-tacc-tagtaggcagaaagaatggagccaggctgaa-atc--atgtttggtaagga---agcagtcattcata-tcaccag-gataggggaata----------------tgtggtc--gttggtgatttggattagattggacctta---------atcatacatggttaaggaggggttttg---gttgt-gccttgactcat--cag-------------ttatctgatgttggtgttctgtaaacttg
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13540298 471 +  16154928 GATATATA----G--------------------------TGTTCTTTGGCTtgtcagtgccttctggccaaaggccacaaagg-atacgcctgcagttga-accaagtcagatttatta-tattgactcattgcaattcaggaggacacataccttggagaatggga-tgtctccat-------------------------cagagggtttcagcaaggactgatcaggcttgtgctgggta-tttgggaga-gggtttgaggaagcagaggt--ggggcaatagttctagaactgaa-tgtctt-aataa--atc-ttac-cagcaagcagaaagaatggaaccaggctcaa-gtt--atgtttggtaagga---aacagtcattcgaa-tcaccag-ggtaggggaatg----------------tgtggttgtgtttgtggtttggattagatttgaccttgatctaattaatcatacatgattaaggaggcattttg---gtttt-gccttgattcat--cagtcacagaatggccttgtctgatgttggtgttctataaacttg
i proCoq1.NW_012148396v1    I 53 C 0
s otoGar3.GL873689             493603 459 +   3845361 GATCTGTA----G--------------------------TG-CCCTTGGCTtgtcagtgccttccatccagaggccactgagg-atacacctgcagtgga-accaagtcagatttatta------accca-tgcaatttgggatgacacatatcttagggaacaggg-tgtcttcat-------------------------cagaagacatgagtaagaactaatgaggcttgtggtggata-ttttgggca-gggtgtaaggaagcACGGGTTGGGAggggttgttttagaactgaagtgtcttaaataa--att-gtatgtagcaagcagagagaatggagcaaggctgaa-gtt--atgattggtcagga---gatagttgtttaca-tcaccag-aagagagg---------------------ggatctgtgtttgtggtttggattagacatgacctgg---------atcacacctggctaaggagctgttttgtttgttttggtcttggtccat--ctgtcacaggctagccttgtctggcgctggggttctgtcacacag
i otoGar3.GL873689          I 7 C 0
s canFam3.chr3               60068411 483 -  91889043 GATATATA----AATAGGtttgttttttttttttttttttttttttttGCTTCTCAGTGGTCTCTA------Gac----gaggaacacacctatagttga-acccaatcaagtttatta------actcactaccactcgggaggatgcataccctcaaaaat-gggatgtttccat--------------------------agtgggtataaccaggaactaatggggtttgcattggatattttggggga-ggattcaagggaata-gggt----------aattctaagaatgag-tgtttt-aataaatatt-aatc-tataaggcagaaaaaatggaattaggatgaa-gttaaatggttgtcaagga---agcag---ttcatactaaccaa-gattggggaagaaaggtttgggagggtgtctggttgtgtttgtggtttggattagatttgaacttg---------atcagac-tgagtaaagagtggttttg---ctttt-gtattgatctatcacagtc-ccgggtaaccttgtttgatattggtgttctgtaaacttg
i canFam3.chr3              I 6 C 0
s dasNov3.JH562051             450869 443 +    563711 GATATATAAATTG--------------------------TGTTCTTTTGCTtgtcagtgccctgtagccagagcccat-ttggaacacaccgatattgaacaa--agttgggtt----------aactcattgcaatgtggaagagt-cataccctggg-----gga-aatctccat-------------------------aagatggtataaaaaaggtctAACTGGGCCTGTGTTCGATGGTTTGGGAGA-GGGTTCCA-gaagtgggagt----------aattctaaaac--ga-tttctt-aataa--attgtatg-tagaaagcaga----atagagcaaggctgaatatt--agaattggtaaagaaatagcaggcattccca-ttatctgtgatatggaatt-----------------tatggtcatatttgtggtttagattagattttaactgg---------atcagacatgattaagaagaggtctta---ttttt-gtcttgatctattaccatcacagagtagccttgtccgatgctggtgttctataactttg
i dasNov3.JH562051          C 0 I 44
e mm10.chr7                  56164142 215 + 145441459 I

a score=97650.000000
s hg38.chr15_KI270851v1_alt    222348 8 +    263054 tcctgtca
s panTro5.chr15               9615534 8 +  83230942 tcctgtca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74141542 8 -  99763055 tcccgtca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       186947 8 -    281578 tcctgtca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71049649 8 + 121039945 tcctgtca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164358604 8 - 169600520 tcctgtca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165679933 8 - 171882078 tcctgtca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       533343 8 +   2379783 tcctgtca
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491209 8 +   4116138 tcctgtca
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53921992 8 +  58131712 tcctgtca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       543636 8 -   3636681 tcctgtca
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       521441 8 -   4457520 tcctgtca
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154555838 8 - 158406734 tCCTGTCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             386529 8 -   2682657 tcctgtca
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       412386 8 -   2086007 tcctgtca
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       472797 8 +   3831555 tcctgtca
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13540769 8 +  16154928 ttctgtca
i proCoq1.NW_012148396v1    C 0 I 60
s otoGar3.GL873689             494062 2 +   3845361 cc------
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60068894 8 -  91889043 ttcagtca
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56164142 215 + 145441459 I
e dasNov3.JH562051             451312 44 +    563711 I

a score=432777.000000
s hg38.chr15_KI270851v1_alt    222356 47 +    263054 tttgttctgtgaaatggcctaacattgacattaacaggccagctcct
s panTro5.chr15               9615542 47 +  83230942 tttgttctgtgaaatgttctaacattgacattaacaggccagctcct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74141550 47 -  99763055 gttgttctgtgaaatgttctaacattgacattaacaggccagctcct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       186955 47 -    281578 gttgttctgtgaaatgttctaacattgacattaacaggccagctcct
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71049657 44 + 121039945 ---gttctgtgaaatggcctaacattgacattaacaggccagctcct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164358612 46 - 169600520 gttgtt-tgtgaaatggcctaacgctgacattaacaggccagctcct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165679941 46 - 171882078 gttgtt-tgtgaaatggcctaacgctgacattaacaggccagctcct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       533351 46 +   2379783 gttgtt-tgtgaaatggcctaacgctgacattaacaggccagctcct
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491217 46 +   4116138 gttgtt-tgtgaaatggcctaacgctgacattaacaggccagctcct
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922000 47 +  58131712 gttgttctgtgaaatggcctaacgctgacattaacaggccagctcct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       543644 46 -   3636681 gttgtt-tgtgaaatggcctaacgctgacattaacaggccagctcct
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       521449 47 -   4457520 gttgttctgtgaaatggcctaacactgacattaacaggccagctcct
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154555846 47 - 158406734 GTGGTTCTGTGAAATGGCCTAACATTGACATTAACAGGCCAGGTCTT
i calJac3.chr6              C 0 I 1087
s saiBol1.JH378292             386537 47 -   2682657 gtggttctgtgaaatggcctaacattgacgttgacaggccaggttta
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       412394 46 -   2086007 gtggttctgtgaaatggcgtaac-ttgacattaacaggccaggtctt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       472805 47 +   3831555 gtggttctgtgaaatggcctcacattgacattaacaggccaggtcct
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             494064 25 +   3845361 --tgttctgag--------------------tgacaggctggttcca
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60068902 41 -  91889043 ----ttctgccaaatggcctata--tgtcagtgtctggccaaccccc
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56164142 215 + 145441459 I
e proCoq1.NW_012148396v1     13540777 60 +  16154928 I
e dasNov3.JH562051             451312 44 +    563711 I

a score=13250.000000
s hg38.chr15_KI270851v1_alt    222403 2 +    263054 -ga
s panTro5.chr15               9615589 2 +  83230942 -ga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74141597 2 -  99763055 -ga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187002 2 -    281578 -ga
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71049701 2 + 121039945 -ga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164358658 2 - 169600520 -ga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165679987 2 - 171882078 -ga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       533397 2 +   2379783 -ga
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491263 2 +   4116138 -ga
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922047 2 +  58131712 -ga
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       543690 2 -   3636681 -ga
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       521496 2 -   4457520 -ga
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             386584 2 -   2682657 -ga
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       412440 2 -   2086007 -ga
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       472852 2 +   3831555 -ga
i aotNan1.NW_018503298v1    C 0 I 55
s otoGar3.GL873689             494089 2 +   3845361 -gg
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60068943 1 -  91889043 t--
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56164142 215 + 145441459 I
e proCoq1.NW_012148396v1     13540777 60 +  16154928 I
e dasNov3.JH562051             451312 44 +    563711 I
e calJac3.chr6              154555893 1087 - 158406734 I

a score=34365.000000
s hg38.chr15_KI270851v1_alt    222405 4 +    263054 ctgt
s panTro5.chr15               9615591 4 +  83230942 ctgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74141599 4 -  99763055 ctgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187004 4 -    281578 ctgt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71049703 4 + 121039945 ctgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164358660 4 - 169600520 ctgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165679989 4 - 171882078 ctgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       533399 4 +   2379783 ctgt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491265 4 +   4116138 ctgt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922049 4 +  58131712 ctgt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       543692 4 -   3636681 ctgt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       521498 4 -   4457520 ctgt
i colAng1.NW_012115278v1    C 0 I 274
s saiBol1.JH378292             386586 4 -   2682657 gtgt
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       412442 4 -   2086007 gtgt
i cebCap1.NW_016107707v1    C 0 C 0
s otoGar3.GL873689             494091 4 +   3845361 ctat
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60068944 4 -  91889043 cagt
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56164142 215 + 145441459 I
e proCoq1.NW_012148396v1     13540777 60 +  16154928 I
e dasNov3.JH562051             451312 44 +    563711 I
e aotNan1.NW_018503298v1       472854 55 +   3831555 I
e calJac3.chr6              154555893 1087 - 158406734 I

a score=79706.000000
s hg38.chr15_KI270851v1_alt    222409  9 +    263054 cag-gactgc
s panTro5.chr15               9615595  9 +  83230942 cag-gactgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74141603  9 -  99763055 cag-gactgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187008  9 -    281578 cag-gactgc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71049707  9 + 121039945 cag-gactgc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164358664  9 - 169600520 cag-gactgc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165679993  9 - 171882078 cag-gactgc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       533403  9 +   2379783 cag-gactgc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491269  9 +   4116138 cag-gactgc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922053  9 +  58131712 cag-gactgc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       543696  9 -   3636681 cag-gactgc
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       521776  9 -   4457520 CAG-GACTGC
i colAng1.NW_012115278v1    I 274 C 0
s saiBol1.JH378292             386590  9 -   2682657 cag-gaccac
i saiBol1.JH378292          C 0 I 7
s cebCap1.NW_016107707v1       412446  9 -   2086007 cag-gactgc
i cebCap1.NW_016107707v1    C 0 I 44
s otoGar3.GL873689             494095 10 +   3845361 cagagactgc
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60068948  7 -  91889043 cgg-gaat--
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56164142 215 + 145441459 I
e proCoq1.NW_012148396v1     13540777 60 +  16154928 I
e dasNov3.JH562051             451312 44 +    563711 I
e aotNan1.NW_018503298v1       472854 55 +   3831555 I
e calJac3.chr6              154555893 1087 - 158406734 I

a score=25795.000000
s hg38.chr15_KI270851v1_alt    222418 3 +    263054 ttt
s panTro5.chr15               9615604 3 +  83230942 ttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74141612 3 -  99763055 ttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187017 3 -    281578 ttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71049716 3 + 121039945 ttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164358673 3 - 169600520 ttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680002 3 - 171882078 ttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       533412 3 +   2379783 ttt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491278 3 +   4116138 ttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922062 3 +  58131712 ttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       543705 3 -   3636681 ttt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       521785 3 -   4457520 TTT
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             386606 3 -   2682657 ttt
i saiBol1.JH378292          I 7 C 0
s otoGar3.GL873689             494105 3 +   3845361 ttt
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60068955 3 -  91889043 tgt
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56164142 215 + 145441459 I
e proCoq1.NW_012148396v1     13540777 60 +  16154928 I
e dasNov3.JH562051             451312 44 +    563711 I
e aotNan1.NW_018503298v1       472854 55 +   3831555 I
e cebCap1.NW_016107707v1       412455 44 -   2086007 I
e calJac3.chr6              154555893 1087 - 158406734 I

a score=75521.000000
s hg38.chr15_KI270851v1_alt    222421 11 +    263054 ttctttctcCT
s panTro5.chr15               9615607 11 +  83230942 ttctttctcCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74141615 11 -  99763055 ttctgtctcTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187020 11 -    281578 ttctttctcCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71049719 11 + 121039945 ttctttctcCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164358676 11 - 169600520 tcctttctcCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680005 11 - 171882078 tcctttctcCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       533415 11 +   2379783 tcctttctcCC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491281 11 +   4116138 tcctttctcCC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922065 11 +  58131712 tcctttctcCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       543708 11 -   3636681 tcctttctcCC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       521788 11 -   4457520 TTCTTTCTCCC
i colAng1.NW_012115278v1    C 0 C 0
s saiBol1.JH378292             386609 11 -   2682657 ttcTTTCTTCT
i saiBol1.JH378292          C 0 I 22
s canFam3.chr3               60068958 11 -  91889043 ttctttctctc
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56164142 215 + 145441459 I
e proCoq1.NW_012148396v1     13540777 60 +  16154928 I
e dasNov3.JH562051             451312 44 +    563711 I
e aotNan1.NW_018503298v1       472854 55 +   3831555 I
e otoGar3.GL873689             494108  0 +   3845361 C
e cebCap1.NW_016107707v1       412455 44 -   2086007 I
e calJac3.chr6              154555893 1087 - 158406734 I

a score=22669.000000
s hg38.chr15_KI270851v1_alt    222432 5 +    263054 CCCCT
s panTro5.chr15               9615618 5 +  83230942 CCCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74141626 5 -  99763055 CCCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187031 5 -    281578 CCCCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71049730 5 + 121039945 CCCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164358687 5 - 169600520 CCACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680016 5 - 171882078 CCACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       533426 5 +   2379783 CCACT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491292 5 +   4116138 CCGCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922076 5 +  58131712 CCGCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       543719 5 -   3636681 CCGCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       521799 5 -   4457520 CCGCT
i colAng1.NW_012115278v1    C 0 C 0
s canFam3.chr3               60068969 5 -  91889043 tctct
i canFam3.chr3              C 0 I 35
e mm10.chr7                  56164142 215 + 145441459 I
e proCoq1.NW_012148396v1     13540777 60 +  16154928 I
e dasNov3.JH562051             451312 44 +    563711 I
e aotNan1.NW_018503298v1       472854 55 +   3831555 I
e otoGar3.GL873689             494108 0 +   3845361 C
e cebCap1.NW_016107707v1       412455 44 -   2086007 I
e saiBol1.JH378292             386620 22 -   2682657 I
e calJac3.chr6              154555893 1087 - 158406734 I

a score=1442161.000000
s hg38.chr15_KI270851v1_alt    222437 255 +    263054 GAccaggctggagtgcagtggcgccatcttggctcactgcaacctccgcccccgggtttaagcagttctccagtctcagcctccagagtagctgggattacaggtgcccaccaccgtgcc-tggctaa-tttttgtatttttca-tagagat-ggcgtttccccatgttggccaggctggtctcgaactccttacct---------attgatccgcccacctcggcctcccaaagtgttgggattacaggcgtgagccaccatgcctg
s panTro5.chr15               9615623 255 +  83230942 GAccaggctggagtgcagtggtgccatcttggctcactgcaacctccgcccctgggtttaagcagttctccagtctcagcctccagagtagctgggattacaggtgcccaccaccgtgcc-tggctaa-tatttgtatttttca-tagagat-ggggtttcaccatgttggccaggctggtctcgaactccttacct---------attgatccgcccgcctcggcctcccaaagggttgggattacaggcgtgagccaccatgcctg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74141631 259 -  99763055 GAccaggctggagtgcagtggcaccatctcaactcactgcaacctccgcccccgggtttaagcaattctccggtctcagcctccagagtagctgggattacaggtgccaaccaccgtgccttggataattttttgtattttttagtagagatgggggtttcaccatgttggccaggctggtctcgaactccttacct---------attgatccgcccgcctcagcctcccaaggtgttgggattacaggcgtgagccaccatgcctg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187036 255 -    281578 GAccaggctggagtgcagtggcgccatctcgactcactgcaacctctgcccccgggtttaagcaattctccggtctcagcctccagagtagctgggattacaggtgcccaccaccatgcc-tggataa-tttttgtatttttca-tagagat-ggggtttcaccatgttggccaggctggtctcgaactccgtacct---------attgatccgcccacctcagcctccgaaagtgttgggattacaggcgtgagccaccatgcctg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71049735 264 + 121039945 GAccaggctggagtgcagtggtgccatctcggctcactgcaacctccgcccccgggtttaatcaattctccggtctcagcctccagagtagctgggattacaggtgcccaccaccgtgcc-tggctaa-tttttgtatttttcg-tagagat-ggggtttcaccatgctggccaggctggtctcgaactccttacctattgatctgattgatctgcccgcctcggcctcccaaagtgttgggattacaggcgtgagccaccacgactg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164358692 255 - 169600520 GAccaggctggagtgcagtggggccatctcggctcactgcaacctccgcccccgggtttaagcaattctccggtctcaggctccagagtagctgggattacaggtgcccaccaccatgcc-tggctaa-tttttgtatttttag-tagagac-agggtttcaccgtgttggccaggctggtctcaaactccttacct---------attgatccgcccatctcggtctcccaaagtgttgggattacaggtgtgagccaccacgcctg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680021 255 - 171882078 GAccaggctggagtgcagtggggccatctcggctcactgcaacctccgcccccgggtttaagcaattctccggtctcaggctccagagtagctgggattacaggtgcccaccaccatgcc-tggctaa-tttttgtatttttag-tagagac-agggtttcaccgtgttggccaggctggtctcaaactccttacct---------attgatccgcccatctcggtctcccaaagtgttgggattacaggtgtgagccaccacgcctg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       533431 255 +   2379783 GAccaggctggagtgcagtggggccatctcggctcactgcaacctccgcccccgggtttaagcaattctccggtctcaggctccagagtagctgggattacaggtgcccaccaccatgcc-tggctaa-tttttatatttttag-tagagac-agggtttcaccgtgttggccaggctggtctcaaactccttacct---------attgatccgcccatctcgatctcccaaagtgttgggattacaggtgtgagccaccacgcctg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491297 255 +   4116138 GAccaggctggagtgcagtggggccatctcagctcactgcaacctccgcccccaggtttaagcaattctccggtctcaggctccagagtagctgggattacaggtgcccaccaccatgcc-tggctaa-tttttgtatttttag-tagagac-agggtttcaccgtgttggccaggctggtctcaaactccttacct---------attgatccgcccatctcagtctcccaaagtgttgggattacaggtgtgagccaccacgcctg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922081 255 +  58131712 GAccaggctggagtgcagtggggccatctcggctcactgcaacctccgcccccgggtttaagcaattctccggtctcaggctccagagtagctgggattataggcacccaccaccatgcc-tggctaa-tttttgtatttttag-tagagac-agggtttcaccgtgttggccaggctggtctcaaactccttacct---------attgatgtgcccatctcggtctcccaaagtgttgggattactggtgtgagccaccacgcctg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       543724 255 -   3636681 GAccaggctggagtgcagtggggccatctcggctcactgcaacctccgcccccaggtttaagcaattctccggtctcaggctccagagtagctgggattacaggtgcccaccaccatgcc-tggctaa-tttttgtatttttag-tagagac-agggtttcaccgtgttggccaggctggtctcaaactccttacct---------attgatccgcccatctcagtctcccaaagtgttgggattacaggtgtgagccaccacgcctg
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       521804 255 -   4457520 GAccaggctggagtgcagtggggccatcttggctcactgcaacctccacccccgggtttaagcaattctccggtcttaggctccagagtagctgggaatacaggtgcccaccaccatgcc-tggctaa-tttttgtatttttag-tagagac-agtgtttcaccgtgttggccaggctggtctcaaactccttacct---------attgatccgcccatctgggtctcccaaagtgttgggattacaggtgtgagccaccacgcctg
i colAng1.NW_012115278v1    C 0 C 0
e mm10.chr7                  56164142 215 + 145441459 I
e proCoq1.NW_012148396v1     13540777  60 +  16154928 I
e dasNov3.JH562051             451312  44 +    563711 I
e canFam3.chr3               60068974  35 -  91889043 I
e aotNan1.NW_018503298v1       472854  55 +   3831555 I
e otoGar3.GL873689             494108   0 +   3845361 C
e cebCap1.NW_016107707v1       412455  44 -   2086007 I
e saiBol1.JH378292             386620  22 -   2682657 I
e calJac3.chr6              154555893 1087 - 158406734 I

a score=-1292.000000
s hg38.chr15_KI270851v1_alt    222692 2 +    263054 g--c
s panTro5.chr15               9615878 2 +  83230942 g--c
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74141890 2 -  99763055 g--c
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187291 2 -    281578 g--c
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71049999 4 + 121039945 gcTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164358947 4 - 169600520 gcTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680276 4 - 171882078 gcTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       533686 4 +   2379783 gcTC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491552 4 +   4116138 gcTC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922336 4 +  58131712 gcTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       543979 4 -   3636681 gcTC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       522059 4 -   4457520 gcTC
i colAng1.NW_012115278v1    C 0 C 0
s canFam3.chr3               60069009 2 -  91889043 gc--
i canFam3.chr3              I 35 C 0
e mm10.chr7                  56164142 215 + 145441459 I
e proCoq1.NW_012148396v1     13540777 60 +  16154928 I
e dasNov3.JH562051             451312 44 +    563711 I
e aotNan1.NW_018503298v1       472854 55 +   3831555 I
e otoGar3.GL873689             494108 0 +   3845361 C
e cebCap1.NW_016107707v1       412455 44 -   2086007 I
e saiBol1.JH378292             386620 22 -   2682657 I
e calJac3.chr6              154555893 1087 - 158406734 I

a score=17059.000000
s hg38.chr15_KI270851v1_alt    222694 2 +    263054 TC
s panTro5.chr15               9615880 2 +  83230942 TA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74141892 2 -  99763055 TC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187293 2 -    281578 TC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71050003 2 + 121039945 TC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164358951 2 - 169600520 TC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680280 2 - 171882078 TC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       533690 2 +   2379783 TC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491556 2 +   4116138 TC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922340 2 +  58131712 TC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       543983 2 -   3636681 TC
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       522063 2 -   4457520 TC
i colAng1.NW_012115278v1    C 0 C 0
s proCoq1.NW_012148396v1     13540837 2 +  16154928 tc
i proCoq1.NW_012148396v1    I 60 C 0
s otoGar3.GL873689             494108 2 +   3845361 tc
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60069011 2 -  91889043 tc
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56164142 215 + 145441459 I
e dasNov3.JH562051             451312 44 +    563711 I
e aotNan1.NW_018503298v1       472854 55 +   3831555 I
e cebCap1.NW_016107707v1       412455 44 -   2086007 I
e saiBol1.JH378292             386620 22 -   2682657 I
e calJac3.chr6              154555893 1087 - 158406734 I

a score=686415.000000
s hg38.chr15_KI270851v1_alt    222696 74 +    263054 TTTTTCATGCTGTATAAAAATTTAGGACTGAATTTAAGAAATGGAAATGTGCTAATGATGGAAATTAGGAACTG
s panTro5.chr15               9615882 74 +  83230942 TTTTTCATGCTGTATAAAAATTTAGGACTGAATTTAAGAAATGGAAATGTGCTAATGATGGAAATTAGGAACTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74141894 74 -  99763055 TTTTTCATGCTGTATAAAAATTTAGGACTGAATTTAAGAAATGGAAATGTGCTAATGATGGGAATTAGGAACTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187295 74 -    281578 TTTTTCATGCTGTATAAAAATTTAGGACTGAATTTAAGAAATGGAAATGTGCTAATGATGGGAATTAGAAACTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71050005 74 + 121039945 TTTTTCATGCTGTATAAAAATTTAGGACTGAATTTAAGAAATGGAAATGTGCTAATGATGGGAATTAGGAACTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164358953 74 - 169600520 TTTTTCATGCTATATAAAAATTTAGGACTGAATTTAAGACATGGAGATGTGCTAATGATGGGAATTAGGAACTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680282 74 - 171882078 TTTTTCATGCTATATAAAAATTTAGGACTGAATTTAAGACATGGAGATGTGCTAATGATGGGAATTAGGAACTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       533692 74 +   2379783 TTTTTCATGCTATATAAAAATTTAGGATTGAATTTAAGACATGGAGATGTGCTAATGATGGGAATTAGGAACTG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491558 71 +   4116138 TTTTTCATGCTATATAAAAATTTAGGACTGAATTTAAGACATGGAGATGTGCTA---ATGGGAACTAGGAACTG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922342 74 +  58131712 TTTTTCATGCTATATAAAAATTTAGGACTGAATTTAAGACATGGAGATGTGCTAATGATGGGAATTAGGAACTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       543985 74 -   3636681 TTTTTCATGCTATATAAAAATTTAGGACTGAATTTAAGACATGGAGATGTGCTAATGATGGGAATTAGGAACTG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       522065 74 -   4457520 TTTTTCATGCTATATAAAAATTTAGGACTGAATTTAAGACATGGAGATGTGCTATTGATGGGAATTAGGAACTG
i colAng1.NW_012115278v1    C 0 C 0
s proCoq1.NW_012148396v1     13540839 74 +  16154928 tttttcATGCTATATAAAAATTTAGGACTGAATTTAGGAAATGGTAATGTACTAATGATGGGAATTAGGAACTG
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             494110 74 +   3845361 tttctcaTGTCATATAAAAATTTAGGTCTGAATTTAAGAATTGGAAATACACTAGTGATGGAAGTTAGGAAGTG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60069013 73 -  91889043 tctctc-tGCTATATAAAAATTTAGGACTAAATTTAAGAAATGGAAATGTGCAAATTGTGGGGGTTAGGAACTG
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             451356 73 +    563711 TTTTTCCTGCTATATAAGTATTTGAGGCTGAATTTAAGAAGTAGAAATGTGCAGATAATGG-AGTTAGGAATTA
i dasNov3.JH562051          I 44 C 0
e mm10.chr7                  56164142 215 + 145441459 I
e aotNan1.NW_018503298v1       472854 55 +   3831555 I
e cebCap1.NW_016107707v1       412455 44 -   2086007 I
e saiBol1.JH378292             386620 22 -   2682657 I
e calJac3.chr6              154555893 1087 - 158406734 I

a score=887747.000000
s hg38.chr15_KI270851v1_alt    222770 68 +    263054 GAAAC----AA-------TTCTC---AGATTATATTTAATATGATACTGTTGAGATTCCAAATCAAATCCGTGGCACACTTT
s panTro5.chr15               9615956 68 +  83230942 GGAAC----AA-------TTCTC---AGATTATATTTAATATGATACTGTTGAGATTCCAAATCAAATCCGTGGCACACTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74141968 68 -  99763055 GGAAC----AA-------TTCTC---AGATTATATTTAATATGATACTATTGAGATTCCAAATCAAATCCGTGGCACACTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187369 68 -    281578 GGAAC----AA-------TTCTC---AGATTATATTTAATATGATACTATTGAGATTCCAAATCAAATCCGTGGCACACTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71050079 68 + 121039945 GAAAC----AA-------TTCTC---AGATTATATTTAATATGATACTATTGAGATTCCAAATCAAATCCGTGGCACACTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164359027 68 - 169600520 GAAAC----AA-------TTCTC---AGATTATATTTAATATGATACTATTGAGATTCCAAATCAAATGCGTGGCACACTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680356 68 - 171882078 GAAAC----AA-------TTCTC---AGATTATATTTAATATGATACTATTGAGATTCCAAATCAAATGCGTGGCACACTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       533766 68 +   2379783 GAAAC----AA-------TTCTC---AGATTATATTTAATATGATACTATTGAGATTCCAGATCAAATGCGTGGCACACTTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491629 68 +   4116138 GAAAC----AA-------TTCTC---AGATTATATTTAATATGATACTATTGAGATTCCAAATCAAATCCGTGGCACACTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922416 68 +  58131712 GAAAC----AA-------TTCTC---AGATTATATTTAATATGGTACTATTGAGATTCCAGATCAAATCCGTGGCACACTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       544059 68 -   3636681 GAAAC----AA-------TTCTC---AGATTATATTTAATATGATACTATTGAGATTCCAAATCAAATCCGTGGCACACTTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       522139 68 -   4457520 GAAAC----AA-------TTCTC---AGATTATATTTAATATGATACTATTGAGATTCCAAATCAAATCCATGGCACACTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154556980 68 - 158406734 GAAAC----AG-------TTCTC---AGGTTATATTTAATATGATATTATTGAGCTTCCAAATCAAATCCGTGGCACACTTT
i calJac3.chr6              I 1087 C 0
s saiBol1.JH378292             386642 65 -   2682657 GAAAC----AG-------TTCTC---AGGTTGTGTTTAATATGA---TATTGAGATTCCAAATCAAATCTGTGGCACACTTT
i saiBol1.JH378292          I 22 C 0
s cebCap1.NW_016107707v1       412499 68 -   2086007 GAAAC----AG-------TTCTC---AGGTTATATTTAATATGATATTATTGAGATTCCAAATCAAATCTGTGGCACACTTT
i cebCap1.NW_016107707v1    I 44 C 0
s aotNan1.NW_018503298v1       472909 68 +   3831555 GAAAC----AG-------TTCTC---AGGTTATATTTAATATGATATTATTGAGATTTCAAATCAAATCCATGGCACACTTT
i aotNan1.NW_018503298v1    I 55 C 0
s proCoq1.NW_012148396v1     13540913 68 +  16154928 GAAACACAGAA-------TTCTC---AGGTTGTAT----TGTGATATTATTGAGATTCCAAATCATACCCCTGGCACACTTT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             494184 66 +   3845361 GACATGCCCAA---------CTC---AGGCTTTAC----TGTGATGTTATTGACCTTCCTAGCCATTCCCCTGGCTCACTTT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60069086 75 -  91889043 GAAAC----ATAAAATTCTTTTC---AGTTTATATTTAATGTGCTATTATTGAGATTTCAAATCAAACACATGGTATACTTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             451429 72 +    563711 GAAATGCAAAA-------TTCTCCTTAGGTTGTATTTAACGTGATATT-TTGAGATTACAAAT--AAGCTATGGCACACTTT
i dasNov3.JH562051          C 0 I 1816
e mm10.chr7                  56164142 215 + 145441459 I

a score=292855.000000
s hg38.chr15_KI270851v1_alt    222838 23 +    263054 -GAAAGGCACACTATGTCCGTTTT
s panTro5.chr15               9616024 23 +  83230942 -GAAAGGTATACTATGTCCGTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74142036 23 -  99763055 -GAAAGGTATACTATGTCCGTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187437 23 -    281578 -GAAAGGTATACTATGTCCGTTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71050147 23 + 121039945 -GAAAGGTATACTATGTCCATTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164359095 23 - 169600520 -GAAAGGTATACTATGTCGGTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680424 23 - 171882078 -GAAAGGTATACTATGTCGGTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       533834 23 +   2379783 -GAAAGGTATACTATGTCAGTTTT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491697 23 +   4116138 -GAAAGGTATACTATGTCCGTTTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922484 23 +  58131712 -GAAAGGTATACTATGTCCATTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       544127 23 -   3636681 -GAAAGGTATACTATGTCCGTTTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       522207 23 -   4457520 -GAAAGGTATACTATGTCCATTTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154557048 23 - 158406734 -GAAAGGCCTACTATGTCTATTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             386707 23 -   2682657 -GACAGGCATACTATGTCTGTTTT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       412567 23 -   2086007 -GAAAGGCATTCTATGTGTGTTTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       472977 23 +   3831555 -GAAAGGCATACTATGTCTGTTTT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13540981 24 +  16154928 GGAAAGGTATATTATGTCCATCTT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             494250 23 +   3845361 -GAAAGGAATATGATGTCCATTTT
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60069161 23 -  91889043 -AAAAGATATGCTGTGTCCATTTT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  56164142 215 + 145441459 I
e dasNov3.JH562051             451501 1816 +    563711 I

a score=323785.000000
s hg38.chr15_KI270851v1_alt    222861 20 +    263054 AACAGTTGCATGAGAAATAA
s panTro5.chr15               9616047 20 +  83230942 AACAGCTGCATGAGAAATAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74142059 20 -  99763055 AACAGTTGCATGAGAAATAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187460 20 -    281578 AACAGTTGCATGAGAAATAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71050170 20 + 121039945 AACAGTTGCATGAGAAATAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164359118 20 - 169600520 AACAGTTGCATGAGAAATAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680447 20 - 171882078 AACAGTTGCATGAGAAATAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       533857 20 +   2379783 AACAGTTGCATGAGAAATAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491720 20 +   4116138 AACAGTTGCATGAGAAATAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922507 20 +  58131712 AACAGTTGCATGAGAAATAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       544150 20 -   3636681 AACAGTTGCATGAGAAATAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       522230 20 -   4457520 AACAGTTGCATGAGAAATAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154557071 20 - 158406734 AACAGTTGCATGAGAAATAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             386730 20 -   2682657 AACAGTTGCATGAGAAATAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       412590 20 -   2086007 AACAGTTGCATGAGAAATAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       473000 20 +   3831555 AACAGTTGCATGAGAAATAA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13541005 20 +  16154928 AACAATTACGTGAGAAATAA
i proCoq1.NW_012148396v1    C 0 I 162
s otoGar3.GL873689             494273 20 +   3845361 GATAATTGCATGAGCAATAA
i otoGar3.GL873689          C 0 I 4
s canFam3.chr3               60069184 20 -  91889043 AACAATTGCATGAGAATTAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             453317 20 +    563711 aaaaATTGCATGAGAAATAA
i dasNov3.JH562051          I 1816 I 5
e mm10.chr7                  56164142 215 + 145441459 I

a score=968907.000000
s hg38.chr15_KI270851v1_alt    222881 103 +    263054 GTATGTGTATAGT-----------TTTAT----AAACTC--T--TGATGC-ATAAAGAGATTA------TTTGTTTGTTCGTTTGAACC---TTGTGGAAGCCTCTCTTTTCATCAGATCGCTTAGA----AAATG
s panTro5.chr15               9616067 104 +  83230942 GTATGTGTATTGT-----------TTTAT----AAACTC--T--TGATGCCATAAAGAGATTG------TTTGTTTGTTCATGTGAACC---TTGTGGAAGGCTCTCTTTTCATCAGATCACTTAGA----AAATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74142079 104 -  99763055 GTATGTGTATAGT-----------TTTAT----AAACTC--T--TGATGCCATGAAGAGATTA------TTTGTTTGTTCGTTTGAACC---TTGTGGAAGGCTCTCTTTTCATCAGATCGCTTAGA----AAATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187480 104 -    281578 GTATGTGTATAGT-----------TTTAT----AAACTC--T--TGATGCCATAAAGAGATTG------TTTGTTTGTTCGTTTGAACC---TTGTGGAAGCCTCTCTTTTCATCAAATCGCTTAGA----AAATG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71050190  94 + 121039945 ------GTATAGT-----------TTTAA----AAACTC--T--TGATGCCATAAAGAGA----------TTGTTTGTTCGTTTGAACC---TTATGGAAGCCTCTCTTTTCATCAAATCGCTTAGA----AAATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164359138  96 - 169600520 GTATGTGTCTAGT-----------TTTAT----AAACTC--T--TGGTGCCATAAAGAGA--------------TTGTTCGTTTGAACC---TTGTGGAAAGCTCTCTTTTCATCAAATCGCTTAGA----AAATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680467  96 - 171882078 GTATGTGTCTAGT-----------TTTAT----AAACTC--T--TGGTGCCATAAAGAGG--------------TTGTTCGTTTGAACC---TTGTGGAAAGCTCTCTTTTCATCAAATCGCTTAGA----AAATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       533877  96 +   2379783 GTATGTGTCTAGT-----------TTTAT----AAACTC--T--TGGTGCCATAAAGAGA--------------TTGTTCGTTTGAACC---TTGTGGAAAGCTCTCTTTTCATCAAATTGCTTAGA----AAATG
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491740  96 +   4116138 GTATGTGTATAGT-----------TTTAT----AAACTC--T--TGGTGCCATAAAGAGA--------------TTGTTCGTTTGAACC---TTGTGGAAAGCTCTCTTTTCATCAAATCGCTTAGA----AAATG
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922527  96 +  58131712 GTATGTGTATAGT-----------TTTAT----AAACTC--T--TGGTGCCTTGAAGAGA--------------TTGTTCGTTTGAACC---TTGTGGAAAGCTCTCTTTTCATCACATCGCTTAGA----AAATG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       544170  96 -   3636681 GTATGTGTATAGT-----------TTTAT----AAACTC--T--TGGTGCCATAAAGAGA--------------TTGTTCGTTTGAACC---TTGTGGAAAGCTCTCTTTTCATCAAATCGCTTAGA----AAATG
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       522250  93 -   4457520 GTATGTATATAGT-----------TTTAT----AAACTC--T--TGATGCCATAAAGAGA--------------TTGTTCGTTTGAACC---TTGTGGAAAGCTCTC---TCATCAAATCGCTTAGA----AAATG
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154557091 100 - 158406734 GTATGCGTATAAT-----------TTTAT----GAACTC--T--TGATGCCACAAAGAGATTT----------TTTGTTTGTTTGAACC---TTGTGGAAAGCTCTCTCTTCATGAAATTGCTTAGA----AAATG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             386750 105 -   2682657 GAATGCATATAAT-----------TTTAT----GAATTC--T--TGATACCACAAAGAGATTTT-----TTTGTTTGTTTGTTTGAACC---TTGTGGAAAGCTCTCTTTTCATGAAATCGCTTAGA----AAATG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       412610 105 -   2086007 GAATGCGTATAAT-----------TTTAT----GAATTC--T--TTATGCCACAAAGAGATTTT-----TTTGTTTGTTTGTTTGAACC---TTATGGAAGGCTCTCTTTTCATGAAATCTCTTAGA----AAATG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       473020 104 +   3831555 GTATGCGTATAAT-----------TTTGT----GAACTC--T--TGATGCCACAAAGAGATTG------TTTGTTTGTTTGTTTGAACC---TTGTGGAAAGTTCTCTTTTCATGAAATCTCTTAGA----AAATG
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             494297 109 +   3845361 ATATGCACAAGAT-----------CTTATTTTCAGACTCTTT--TGATACCATAAAGAGATGC------TTTATTTTTTTG--TGGACTGTGCTGTAGAAAGCTCTTTAT--ATCAAATTGCTTAGA----AAATA
i otoGar3.GL873689          I 4 C 0
s canFam3.chr3               60069204 113 -  91889043 AAATGCATTTGTT-----------TTTATTTT-AAACTC--TTCTAAGGCCATAAAGAGATCC------TGTTTTGTTTTGTTTGAACT---TTGTACAAAACTCTCTTACTATTGAATAGTTTGGATTAGAAAGA
i canFam3.chr3              C 0 I 4
s dasNov3.JH562051             453342 123 +    563711 GTATGAATATGGTTTTGTTTTTTCTTTAT----AATTTT--T--TGATGCCATTGAGAGATTGTGTGTGTGTGTTTGTGTGTTTTAACC---CTGTGTAA-GCTCTATTTCCTTTAG-TAGCTGAGATTAGAAAAG
i dasNov3.JH562051          I 5 C 0
e mm10.chr7                  56164142 215 + 145441459 I
e proCoq1.NW_012148396v1     13541025 162 +  16154928 I

a score=360946.000000
s hg38.chr15_KI270851v1_alt    222984 36 +    263054 GCCACAGTTGGTGGT---TCCCCAGTGGTGAGAGGTTCC
s panTro5.chr15               9616171 39 +  83230942 GCCACAGTTGGTGGTGGTTCCCCAGTGGTGAGAGGTTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74142183 36 -  99763055 GCCACAGTTGGTGGT---TCCCCAGTGGTGAGAGGTTCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187584 36 -    281578 GCTACAGTTGGTGGT---TCCCCAGCGGTGAGAGGTTCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71050284 39 + 121039945 GCCACAGTTGGTGGTGGTTCCCCAGTGGTGAGAGGTTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164359234 39 - 169600520 GCCACAATTGGTGGTGGTTCCCCAGAGGTGAGAGGTTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680563 39 - 171882078 GCCACAATTGGTGGTGGTTCCCCAGAGGTGAGAGGTTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       533973 39 +   2379783 GCCACAATTGGTGGTGGTTCCCCAGTGGTGAGAGGTTCT
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491836 39 +   4116138 GCCACAATTGGTGGTGATTTCCCAGTGGTGAGAGGTTCT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922623 39 +  58131712 GCCACAATTGGTGGTGGTTCCCCAGTGGTGAGAGGTTCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       544266 39 -   3636681 GCCACAATTGGTGGTGGTTCCCCAGTGGTGAGAGGTTCT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       522343 36 -   4457520 GCCACAATTGGTGG---TTCCCCAGTGGTGAGAGGTTCT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154557191 39 - 158406734 GCCATAATTTGTGGTGGCTCCCAGGTGGATAGAGGTTCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             386855 39 -   2682657 GCCACAATTGGTGGTGGCTCCCCGGTGGATAGAGGTTCT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       412715 39 -   2086007 GCCACAATTGGTGGTGGCTCCCCAGTGGATAGAGGTTCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       473124 39 +   3831555 GCCACAACTGGTGGTGGCTCCCCAGTGGATAGAGGTTCT
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             494406 25 +   3845361 GTCACATTTGAC------TTGACAGTGGTGG--------
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56164357 38 + 145441459 GCTACAA-TACTGGTTCTTTCCCAGGGGTTAGGGGCATT
i mm10.chr7                 I 215 I 2
s canFam3.chr3               60069321 36 -  91889043 GTCATAA-TAGTGGT-GCTTCCCAGTGTGGGGGAATGC-
i canFam3.chr3              I 4 C 0
s dasNov3.JH562051             453465 36 +    563711 AGCACAA-CAGCGGTACTTCCCCAGTGGGTGGAGTGT--
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13541025 162 +  16154928 I

a score=561137.000000
s hg38.chr15_KI270851v1_alt    223020 36 +    263054 TAGAGCTTCTCATGTTACATAAGAACAAGTGGATTA
s panTro5.chr15               9616210 36 +  83230942 TAGAGCTTCTCATGTTACATAAGAACAAGTGGATTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74142219 36 -  99763055 TAGAGCTTCTCATGTTACGTAAGAACAAATGGATTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187620 36 -    281578 TAGAGCTTCTCATGTTACATAAGAACAAGTGGATTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71050323 36 + 121039945 TAGAGCGTCTCATGTTACATAAGAACAAATGGATTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164359273 36 - 169600520 TAGAGCTTCTCATGTTACATAAGAACAAATGGATTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680602 36 - 171882078 TAGAGCTTCTCATGTTACATAAGAACAAATGGATTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       534012 36 +   2379783 TAGAGCTTCTCATGTTACATAAGAACAAATGGATTA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       491875 36 +   4116138 TAGAGCTTCTCATGTTACATAAGAACAAATGGATTA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922662 36 +  58131712 TAGAGCTTCTCATGTTACATAAGAACAAATGGATTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       544305 36 -   3636681 TAGAGCTTCTCATGTTACATAAGAACAAATGGATTA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       522379 36 -   4457520 TAGAACTTCTCATGTTACATAAGAACAAATGGATTA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154557230 36 - 158406734 TAGAGCTGCTCATGTTACATAAGAGCAAATGGATTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             386894 36 -   2682657 TAGAGCTTCTCATGTTACATAAGAGCAAGTGGATTG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       412754 36 -   2086007 TAGAGCTTCTCATGTTACATAAGAGCAAATGGATTG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       473163 36 +   3831555 TAGAGCTTCTCATGTTACACAAGAGCAAATGGATTG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13541187 36 +  16154928 TAGAGTTTCTCAGGTTATATAAGCACAAATGGCCTA
i proCoq1.NW_012148396v1    I 162 C 0
s otoGar3.GL873689             494431 36 +   3845361 TAAAGTTTCTCAGGTAACATAAGAACACATGGCCTA
i otoGar3.GL873689          C 0 I 275
s mm10.chr7                  56164397 36 + 145441459 TAGAACTACTCAGATTATGCAAGAACAAAAGACTTC
i mm10.chr7                 I 2 C 0
s canFam3.chr3               60069357 36 -  91889043 GAGAATGTCTCAGGTTACATAAGAACAAATGGCTTA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             453501 36 +    563711 TAGTGTTTTTTAGGTTACATAAGAACAAATGGATTA
i dasNov3.JH562051          C 0 C 0

a score=52470.000000
s hg38.chr15_KI270851v1_alt    223056 3 +    263054 TTT
s panTro5.chr15               9616246 3 +  83230942 TTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74142255 3 -  99763055 TTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187656 3 -    281578 TTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71050359 3 + 121039945 TTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164359309 3 - 169600520 TTT
i rheMac8.chr7              C 0 I 768
s macFas5.chr7              165680638 3 - 171882078 TTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       534048 3 +   2379783 TTT
i macNem1.NW_012011934v1    C 0 I 316
s cerAty1.NW_012001462v1       491911 3 +   4116138 TTT
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922698 3 +  58131712 TTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       544341 3 -   3636681 TTT
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       522415 3 -   4457520 TTT
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154557266 3 - 158406734 TTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             386930 3 -   2682657 TTC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       412790 3 -   2086007 TTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       473199 3 +   3831555 TTT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13541223 3 +  16154928 TTT
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             494742 3 +   3845361 TTT
i otoGar3.GL873689          I 275 C 0
s mm10.chr7                  56164433 2 + 145441459 -Tt
i mm10.chr7                 C 0 I 15
s canFam3.chr3               60069393 3 -  91889043 TTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             453537 3 +    563711 TTT
i dasNov3.JH562051          C 0 C 0

a score=1613192.000000
s hg38.chr15_KI270851v1_alt    223059 130 +    263054 AATAT-TTTACTTTA----AACAT-TTTTCTTTGCTTAAGAGATTGTTAAAATATTTGCAAATCAAAACA-AGACAAATTTTAAAAATAAGAAT-------------------TTGGTT------TCT------TTGTTTTGAGTGACACGTTGCTCTTATCAAAGGA
s panTro5.chr15               9616249 130 +  83230942 AATAT-TTTACTTTA----AACAT-TTTTCTTTGCTTAAGAGATTGTTAAAATATTTGCAAATCAAAACA-AGACAAATTTTAAAAATAAGAAT-------------------TTGGTT------TCT------TTGTTTTGAGTGACACGTTGCTCTTATCAAAGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74142258 130 -  99763055 AATAT-TTTACTTTA----AACAT-TTTTCTTTGCTTAAGAGATTGTTAAAATACTTGCAAATCAAAACA-AGACAAATTTTAAAAATAAGAAT-------------------TTGGTT------TCT------TTGTTTTGAGTGACACGTTGCTCTTATCAAAGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187659 130 -    281578 AATAT-TTTACTTTA----AACAT-TTTTCTTTGCTTAAGAGATTGTTAAAATATTTGCAAATCAAAACA-AGACAAATTTTAAAAATAAGAAT-------------------TTGGTT------TCT------TTGTTTTGAGTGACACGTTGCTCTTATCAAAGGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71050362 124 + 121039945 AATAT-TTTACTTTA----AACAT-TTTTCTTTGCTTAAGAGATTGTTAAAATATTTGCAAATCAAAACA---ACAAATTTTAAAAATAAGGAT-------------------TTGG----------T------TTGTTTTGAGTGACACGTTGCTCTTATCAAAGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164360080 130 - 169600520 AATAT-TTTACTTTA----AACAT-TGTTCTTTGCTTAAGAGATTGTTAAAGTATTTGCAAATCAAAACA-AGACAAATTTTAAAAATAAGAAT-------------------TTGGTT------TCT------TTGTTTTGAGTGACACATTGCTCTTATCAAAGGA
i rheMac8.chr7              I 768 C 0
s macFas5.chr7              165680641 130 - 171882078 AATAT-TTTACTTTA----AACAT-TGTTCTTTGCTTAAGAGATTGTTAAAGTATTTGCAAATCAAAACA-AGACAAATTTTAAAAATAAGAAT-------------------TTGGTT------TCT------TTGTTTTGAGTGACACATTGCTCTTATCAAAGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       534367 130 +   2379783 AATAT-TTTACTTTA----AACAT-TGTTCTTTGCTTAAGAGATTGTTAAAGTATTTGCAAATCAAAACA-AGACAAATTTTGAAAATAAGAAT-------------------TTGGTT------TCT------TTGTTTTGAGTGACACATTGCTCTTATCAAAGGA
i macNem1.NW_012011934v1    I 316 C 0
s cerAty1.NW_012001462v1       491914 130 +   4116138 AATAT-TTTACTTTA----AACAT-TGTTTTTTGCTTAAGAGATTGTTAAAGTATTTGCAAATCAAAACA-AGACAAATTTTAAAAATAAGAAT-------------------TTGGTT------TCT------TTGTTTCGAGTGACACATTGCTCTTATCAAAGGA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922701 130 +  58131712 AATAT-TTTACTTTA----AACAC-TGTTCTTTGCTTAAGAGATTATTAAAGTATTTGCAAATCAAAACA-AGACAAATTTTAAAAATAAGAAT-------------------TTGGTT------TCT------TTGTTTTGAGTGACACATTGCTCTTATCAAAGGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       544344 130 -   3636681 AATAT-TTTACTTTA----AACAT-TGTTCTTTGCTTCAGAGATTGTTAAAGTATTTGCAAATCAAAACA-AGACAAATTTTAAAAATAAGAAT-------------------TTAGTT------TCT------TTGTTTTGAGTGACACATTGCTCTTATCAAAGGA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       522418 130 -   4457520 AATAT-TTTACTTTA----AACAT-TGTTCTTTGCTTAAGAGATTGTTAAAGTATTTGCAAATCAAAACA-AGACAAATTTTAAAAATAAGAAT-------------------TTGGTT------TCT------TTGTTTTGAGTGACACATTGCTCTTATCAAAGGA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154557269 128 - 158406734 AATGT-TTCACTTTA----AGCGT-TTTTCTTTGCTTAAGAGATGGTTAAAGTATTTGCAAATCCAAACA-AGACAAATTTAAAAAATAAGA---------------------TTAGCT------TCT------TTGTTTTGAGTGAGGCATTGCTCTTCTCAAAGGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             386933 120 -   2682657 ATTGT-TTCACTTTA----AGCAT-TTTTCTTTGCTTAAGAGTTG--------ATTTGCAAATCAAAACA-CGACAAATTTTAAAAATAAGA---------------------TTGGTT------TCT------TTGTTTTGAGTGACACGTTGCTCTTATCAAAGGT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       412793 128 -   2086007 AATGT-TTCACTTTA----AGCGT-TTTTCTTTGCTTAAGAGTTGGTTAAAGTACTTGCAAATCAGAACA-AGACAAATTTTAAAAATAAGA---------------------TTGGCT------TCT------TTGTTTTGAGTGACACGTTGCTCTTATCAAAGGA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       473202 128 +   3831555 AATGT-TTCACTTTA----AGCAT-TTTTCTTTGCTTAAGAGATGGTTAAAGTATTTGCAAATCAAAACA-AGACAAATTTTAAAAATAAGA---------------------TTGGTT------TCT------TTGTTTTGAGTGATACATTGCTCTTATCAAAGGA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13541226 135 +  16154928 AATAT-TTTACTTTATTTTAACGT-TTTTCTTTGCTTAAGAAATTCTTAAGAGATTTACAA-----AAAA-AGACAAATTTTATAAACAAGAAT-------------------TCGGCT------TCTAGGTTAATGTTTTGAGTGGCACATTGCTCTTATGAAAGGA
i proCoq1.NW_012148396v1    C 0 I 1546
s otoGar3.GL873689             494745 155 +   3845361 AATGT-TTTACTTTATTGTAATAT-TTGTCTTTGTTTAAG-AATTCTTAATAAATTTATAAA-CATAAAA-AGAC--ATTTTAAAAACAAGAATTTAGGTTTAGAGACAAGAATTAGTT------TCTAGATTAATGTTTTGAGTGGCACATGGCATTTATCAAAGAA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56164450 123 + 145441459 tatatatatatctta----tatatatatatTTTGCTTTAAAAATTTTAAATG---------ATTGAAACA-AGGATAAGTT-AAAAATGATTATGGCTG--------------TTAAAG------TCA------ATGTTTTGAAAGA-AGATTGTTCTT---AAAGGA
i mm10.chr7                 I 15 C 0
s canFam3.chr3               60069396 136 -  91889043 AACAT-TATACTTTAGTTTAACAT-TTCT-----CTTAAGACGTTCTTAGAAGCTTTATAAATTAAAACACACATAAATTTTAAAAATGAGAAC-------------------TTGGTTCAGAAGTTA------GCGTTTTGAGTAGCAGAGTGTACTTACCAAAGGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             453540 125 +    563711 AATAT-TTCACTTCA--------T-TTTTATTCATTTAAGGGATTCTTGAAAGCCTTACAAATCGAAACA--------TTTTAAAAGCAGAATT-------------------TTGGTTTAGAAGTTA------ATGTTTTGAGTGGCATATTGCTCTTATCAAAGGA
i dasNov3.JH562051          C 0 C 0

a score=12807.000000
s hg38.chr15_KI270851v1_alt    223189 3 +    263054 -TGA
s panTro5.chr15               9616379 3 +  83230942 -CAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74142388 3 -  99763055 -CGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187789 3 -    281578 -CGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71050486 3 + 121039945 -CAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164360210 3 - 169600520 -CAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680771 3 - 171882078 -CAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       534497 3 +   2379783 -CAA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       492044 3 +   4116138 -CAA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922831 3 +  58131712 -CAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       544474 3 -   3636681 -CAA
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       522548 3 -   4457520 -CAA
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154557397 3 - 158406734 -TAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             387053 3 -   2682657 -TAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       412921 3 -   2086007 -TAA
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       473330 3 +   3831555 -TAA
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             494900 3 +   3845361 -TAA
i otoGar3.GL873689          C 0 I 331
s mm10.chr7                  56164573 1 + 145441459 -T--
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60069532 3 -  91889043 -CAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             453665 3 +    563711 TTA-
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13541361 1546 +  16154928 I

a score=1300740.000000
s hg38.chr15_KI270851v1_alt    223192 133 +    263054 AAGAAGTCTTCATGTTA--TTAATGTGGTTTTTATTCCCTGAGATA-CCAAAGGTAT----TGTATGGAAT-------TGTTGACTTGGTGTAATTAGA----AACCA------AAA-------------TGTCCT----------atttt---aaacctaa-----tgcaaaagtaaggaatgtagt
s panTro5.chr15               9616382 133 +  83230942 AAGAAGTCTTCACATTA--TTAATGTGGTTTTTATTCCCTGAGATA-CCAAAGGTAT----TGGATGGAAT-------TGTTGACTTGGTGTAATTAAA----AACCA------AAA-------------TGTCCT----------atttt---aaacctaa-----tgcagaagtaaggaatgtagt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74142391 133 -  99763055 AAGAAGTCTTCACATTA--TTAATGTGGTTTTTATTCCCTGAGATA-CCAAAGGTAT----TGTGTGGAAT-------TGTTGACTTGGTGTAATTAAA----AACCA------AAA-------------TGTCCT----------atttt---aaacctaa-----tgcaaaagtaaggaatgtagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187792 133 -    281578 AAGAAGTCTTCACATTA--TTAATGTGGTTTTTATTCCCTGAGATA-CCAAAGGTAT----TGTATGGAAT-------TGTTGACTTGGTGTAATTAAA----AACCA------AAA-------------TGTCCT----------atttt---aaacctaa-----tgcaaaagtaaggaaagtagt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71050489 133 + 121039945 AAGAAGTCTTCACGTTA--TTAATGTGGTTTTTATTTCCTGAGATA-CCAAAGGTAT----TATATGGGAT-------TGTTGACCTGGTGTAATTAAA----AACCA------AAA-------------TGTCCT----------atttt---aaacctaa-----tgcaaaagtaaggaatgtagt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164360213 128 - 169600520 AATAAGTCT-----TTA--TTAATGTGGTTTTTATTCCCTGAGATA-CTAAAGGTGG----TATATGGAAT-------TGTTGACTTGGTGGAATTAAA----AACCA------AAA-------------CGTCCT----------Gtttt---aaacctaa-----tacaaaagtaaagaatgtagt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680774 128 - 171882078 AATAAGTCT-----TTA--TTAATGTGGTTTTTATTCCCTGAGATA-CTAAAGGTGG----TATATGGAAT-------TGTTGACTTGGTGGAATTAAA----AACCA------AAA-------------CGTCCT----------Gtttt---aaacctaa-----tacaaaagtaaagaatgtagt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       534500 128 +   2379783 AATAAGTCT-----TTA--TTAATGTGGTTTTTATTCCCTGAGATA-CTAAAGGTGG----TATATGGAAT-------TGTTGACTTGGTGGAATTAAA----AACCA------AAA-------------CGTCCT----------Gtttt---aaacctaa-----tacaaaagtaaagaatgtagt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       492047 128 +   4116138 AATAAGTCT-----CTA--TTAATGTGGTTTTTATTCCCTGAGATA-CTAAAGGTGG----TATATGGAAT-------TGTTGACTTGGTGGAATTAAA----AACCA------AAA-------------CGTCCT----------Gtttt---aaacctaa-----tacaaaagtaaagaatgtagt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922834 128 +  58131712 AATAAGTCT-----TTA--TTAATGTGGTTTTTATTCCCTGAGATA-CTAAAGGTGG----TATATGGAAT-------TGTTGACTTGGTGGAATTAAA----AACCA------AAA-------------CGTCCT----------Gtttt---aaacctaa-----tacaaaagtaaagaatgtagt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       544477 128 -   3636681 AATAAGTCT-----CTA--TTAATGTGGTTTTTATTCCCTGAGATA-CTAAAGGTGG----TATATGGAAT-------TGTTGACTTGGTGGAATTAAA----AACCA------AAA-------------CGTCCT----------Gtttt---aaacctaa-----tacaaaagtaaagaatgtagt
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       522551 128 -   4457520 AATAAGTCT-----TTA--TTAATGTGGTTTTTATTTGCTGAGATA-CCAAAGGTGG----TATATGGAAT-------TGTTGACTTGGTGGAATTAAA----AACCA------AAA-------------TGTCCT----------Gtttt---aaatctaa-----tacaaaagtaaagaatgtggt
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154557400 135 - 158406734 AAGAAATCTTTACATCA--TGAATGTGG-TTTTATTCCCTAAGATA-CCAAAGGTAT----TACATGGAAT-------TGTTGACTTGGTGTAATTAAA-AAGAAACA------AAA-------------TTTCTT----------ATTTT---AAACCTAA-----TAGAAAAGTAAAGAATGTAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             387056 142 -   2682657 AAGAAGTCTTTACATCA--TGAATGTGG-TTTTATTTCCTAAGATA-CCAAAGGTAT----TATATGGAATTGTTGACTGTTGACTTGGTGTAATTAAA-AAGAAACA------AAG-------------TTTCTT----------atttt---aaacctaa-----tacaaaagtaaagaatgtagt
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       412924 135 -   2086007 AAGGAATCTTTACATCA--TGAACGTGG-TTTTATTCCCTAAGTTA-CCAAAGGTAT----TATATGGAAT-------TGTTGACTTGATGTAATTAAA-AAGAAACA------AAA-------------TTTCTT----------Gtttt---aaacctaa-----tacaaaagtaaagaatgtagt
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       473333 135 +   3831555 AAGAAATCTTTACATCA--TGAATGTGG-TTTTATTCCCTAAGATA-CCAAAGGTCT----TATATGGAAT-------TGTTGACTTGGTGTAATTAAA-AAGAAACA------AAA-------------TTTCTT----------atttt---aaacctaa-----tacaaaagtaaagaatgtagt
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             495234 148 +   3845361 GAGAAGTTT---TAACA--TTAGTGTGGTTTTTATTTGCTAAGCTA-CTGAAAGTATATAGTAAATGGGAT-------TTTTGACAC--TGTAATGAAA-ATCAAACA--CATGAaa-------------tttcttactgtggaaaatttt---aaacat-a-----tccagaagaaaagagtatagt
i otoGar3.GL873689          I 331 I 882
s mm10.chr7                  56164574 100 + 145441459 -AGAAATTATTAT-TTA--TTAATATGG-TTTTATTCCCTAATATA--TGAAGGTGC----TAAGTGTTAT-------TTTGGA--------GATTATA----AGCAT------GAA------------------T----------AT------------------------AAGTAGAGACTATAGT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60069535 132 -  91889043 GAGATCTCTTAACATTA--TTCTTGTGATTTTTATTTCCTAA------------TAC----TAAATGGAGT-------TTTTAACTTGATGTAATTAAA----AACAAAGAAACAAA-------------Cattgt------agaaaatgt---caatcgta-----cacagaaatagagaatatagc
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             453668 161 +    563711 AAGAAGTCTTAGCATTATTTTAATGGCATTTTTCTTTTGTAATATATCTTAAGGTAC----TAAATGGAAG-------TTTTGACTTGGTTTAATAAAGCAAGAAACA------AAAAAAGAAAGCTCTacttctt----------attgtggaaaacttaaatgtgtaaataagtagagaggatagt
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13541361 1546 +  16154928 I

a score=12376.000000
s hg38.chr15_KI270851v1_alt    223325 1 +    263054 t
s panTro5.chr15               9616515 1 +  83230942 t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74142524 1 -  99763055 t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187925 1 -    281578 t
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71050622 1 + 121039945 t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164360341 1 - 169600520 t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680902 1 - 171882078 t
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       534628 1 +   2379783 t
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       492175 1 +   4116138 t
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922962 1 +  58131712 t
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       544605 1 -   3636681 t
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       522679 1 -   4457520 t
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154557535 1 - 158406734 T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             387198 1 -   2682657 t
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       413059 1 -   2086007 t
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       473468 1 +   3831555 t
i aotNan1.NW_018503298v1    C 0 C 0
s mm10.chr7                  56164674 1 + 145441459 T
i mm10.chr7                 C 0 I 3
e proCoq1.NW_012148396v1     13541361 1546 +  16154928 I
e dasNov3.JH562051             453829 0 +    563711 C
e canFam3.chr3               60069667 0 -  91889043 C
e otoGar3.GL873689             495382 882 +   3845361 I

a score=929545.000000
s hg38.chr15_KI270851v1_alt    223326 86 +    263054 tacaatgaa----cctccatgtgctcattacctggctttaacgattgtcgcctcatggccaaaat-------t-----attcatgctcccttcttgtgatta
s panTro5.chr15               9616516 85 +  83230942 tacaatgaa----ccttcatgtgctcattacctggctttaacgattgtcgcctca-ggccaaaat-------t-----attcatgctcccttcttgtgatta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74142525 85 -  99763055 tacaatgaa----cctccatgtgctcattacctggctttaacgattgtcgcctca-ggccaaaat-------t-----attcatgctcccttcttgtgatta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       187926 86 -    281578 tgcaatgaa----cctccatgtgctcattacctggctttaacgattgtcgcctcacggccaaaat-------t-----attcatgctcccttcttgtgatta
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71050623 86 + 121039945 tacaatgaa----cctccacgtgctcattacctggctttaacgattgtcacctcacggccaaaat-------t-----actcatcctcccttcttgtgatta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164360342 86 - 169600520 tacaatgaa----cctccatgtgctcattacctggctttgacaatcgtcacctcacggccaaaat-------t-----attcatgctcctttcttgggatta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680903 86 - 171882078 tacaatgaa----cctccatgtgctcattacctggctttgacaatcgtcacctcacggccaaaat-------t-----attcatgctcccttcttgggatta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       534629 86 +   2379783 tacaatgaa----cctccatgtgctcattacctggctttgacaatcgtcacctcacggccaaaat-------t-----attcatgctcccttcttgggatta
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       492176 86 +   4116138 tacaatgaa----cctccatgtgctcattacctggctttgacattcgtcacctcacggccaaaat-------t-----attcatgctcccttcttgggatta
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53922963 86 +  58131712 tacaatgaa----cctccatgtgctcattacctggctttgacaatcgtcacttcatggccaaaat-------t-----attcatgctcccttcttgggatta
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       544606 86 -   3636681 tacaatgaa----cctccatgtgctcattacctggctttgacaatcgtcacctcacggccaaaat-------t-----attcatgctcccttcttgggatta
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       522680 86 -   4457520 tacaacgaa----cctccatgtgctcattacctggctttgacattcgtcacctcacggccaaaat-------t-----attcatgctcccttcttgggatta
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154557536 90 - 158406734 TACAATGAACCTCCCTCCATGTGCCCATTACCTGGCTTTAACAGTTGTTACCTCACAGTCAGAAT-------T-----ATTCATGCtcctttcttgtgatta
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             387199 86 -   2682657 tacaatgaa----cctccatgtgtccattacctggctttaacacttgttacctcacagccagaat-------t-----attcatgctcctttcttatgatta
i saiBol1.JH378292          C 0 I 315
s cebCap1.NW_016107707v1       413060 86 -   2086007 tacagtgaa----cctccatgtgtccgttagctggctttaacagttgttacctcacggccagaat-------t-----attcatcctcctttcttgtgatta
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       473469 86 +   3831555 tacagtgag----cctccatgtgcccattacctggctttaaccgttgttacctcatggccagaat-------t-----attcattctcctttcttgtgatta
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             496264 91 +   3845361 tagaatcag----tcaccgtgtgcccattacacagcctcagtatctgccacttcctggccataat-------tttttcatccataatcccctcctttgatta
i otoGar3.GL873689          I 882 C 0
s mm10.chr7                  56164678 55 + 145441459 TAAACTAAG----CATC--TGAAACTACTTCTTAG------------------TGCAACCA-----------T-----GTTAAGCCACTCTTCTC-------
i mm10.chr7                 I 3 C 0
s canFam3.chr3               60069667 79 -  91889043 -gaaatgag----cctccatgtgcccatcacctggctttaatagttggcaacccctggcctaagt-------t-----a------attccttcccttgatta
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             453829 83 +    563711 -ataatgta----cctctgtgtacccatcaac-------aaaaattgtcaactcgtggccaaaatggtttcat-----atctaatcctctcccttgtg--ta
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13541361 1546 +  16154928 I

a score=397956.000000
s hg38.chr15_KI270851v1_alt    223412 32 +    263054 ttttgaaaccaggcgc----tgacatcatgta-ttag
s panTro5.chr15               9616601 32 +  83230942 ttttgaaaccaggcgc----tgacatcatgta-ttat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74142610 32 -  99763055 ttttgaaaccaggcgc----tgacatcatgta-ttat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       188012 32 -    281578 ttttgaaaccaggcgc----tgacatcatgta-ttat
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71050709 32 + 121039945 ttttgaaaccagtcgc----tgacatcatgta-ttat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164360428 33 - 169600520 ttttgaaaccagtcgc----tgacatcatgtatttat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165680989 33 - 171882078 ttttgaaaccagtcgc----tgacatcatgtatttat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       534715 33 +   2379783 ttttgaaaccagtcgc----tgacatcatgtatttat
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       492262 32 +   4116138 ttttgaaaccagtcgc----tgacatcatgta-ttat
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53923049 32 +  58131712 ttttgaaaccagtcgc----tgacatcatgta-ttat
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       544692 32 -   3636681 ttttgaaaccagtcgc----tgacatcatgta-ttat
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       522766 32 -   4457520 ttttgaaaccagtcgc----tgacatcatgta-ttat
i colAng1.NW_012115278v1    C 0 C 0
s calJac3.chr6              154557626 32 - 158406734 ttttgaaaccagttgc----tgacatcatgta-ttat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             387600 32 -   2682657 ttttcagaccggttgc----tgacatcatgta-ttat
i saiBol1.JH378292          I 315 C 0
s cebCap1.NW_016107707v1       413146 32 -   2086007 ttttgaaaccagttgc----tgacatcatgtg-ttat
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       473555 32 +   3831555 ttttgaaaccagttgc----tgacatcatgta-ttat
i aotNan1.NW_018503298v1    C 0 C 0
s otoGar3.GL873689             496355 32 +   3845361 tttttaagctagtcct----tagcatcatgtg-ttat
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56164733 32 + 145441459 TCCTGGAGCTGACTGA----TGTTTTTGTGTG-CCAT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60069746 36 -  91889043 ttttgaagtcgatccctgattgacatcatgtg-ttag
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             453912 30 +    563711 ttttaaagctaatctc----tgacatcatg---ttat
i dasNov3.JH562051          C 0 C 0
e proCoq1.NW_012148396v1     13541361 1546 +  16154928 I

a score=669599.000000
s hg38.chr15_KI270851v1_alt    223444 45 +    263054 ttcatccat-aagcatttta--gtacctatctctaaaagata--gactct
s panTro5.chr15               9616633 45 +  83230942 ttcatccat-aagcatttta--gtacctatctctaaaagata--gactct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74142642 45 -  99763055 ttcatccat-aagcatttta--gtacctatctctaaaagata--gactct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       188044 45 -    281578 ttcatccat-aagcatttta--gtacctatctctaaaagata--gactct
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71050741 45 + 121039945 ttcatccat-aagtttttta--gtacctatctctaaaagaca--gactct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164360461 45 - 169600520 ttcatccat-aagtatttta--gtacctatctctaaaagata--tactct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165681022 45 - 171882078 ttcatccat-aagtatttta--gtacctatctctaaaagata--tactct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       534748 45 +   2379783 ttcatccat-aagtatttta--gtacctatctctaaaagata--tactct
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       492294 45 +   4116138 ttcatccat-aagtatttta--gtacctatctctaaaagata--cactct
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53923081 45 +  58131712 ttcatccat-aagtatttta--gtacctatctctaaaagata--tactct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       544724 45 -   3636681 ttcatccgt-aagtgtttta--gtacctatctctaaaagata--tgctct
i manLeu1.NW_012102332v1    C 0 C 0
s colAng1.NW_012115278v1       522798 45 -   4457520 ttcatccat-aagtatttta--gtacctatctctaaaagata--TACTCT
i colAng1.NW_012115278v1    C 0 N 0
s calJac3.chr6              154557658 45 - 158406734 ttcatccat-aagtatttta--gtacctatctctaaaagaca--tgctct
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             387632 45 -   2682657 ttcatccat-aagtatttta--gtacctgtctctaaaagaca--tgctct
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       413178 45 -   2086007 ttcatccat-aagtatttta--gtacctatctctaaaagaca--tgctct
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       473587 45 +   3831555 ttcatccat-aagtatttta--gtacctatctctaaaagaca--tgctct
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13542907 46 +  16154928 ttcattcat-aagtatctta--gtacatat-tctaaaagataggtaccct
i proCoq1.NW_012148396v1    I 1546 C 0
s otoGar3.GL873689             496387 47 +   3845361 ttcatccat-aagtatctca--gtacttgtctctaaaagattcgtactct
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56164765 44 + 145441459 TTCATCCAT-AAGTCTCTTACCTTGCCCTTCTC---AGGGAA--CACTCT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60069782 47 -  91889043 ttcatccat-aagtatctta--gtatgtctctctaaaagagaagtactct
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             453942 48 +    563711 ttcaaccataaagtatctta--gtacatatttctaaaagataagtactct
i dasNov3.JH562051          C 0 C 0

a score=8020719.000000
s hg38.chr15_KI270851v1_alt    223489 621 +    263054 ttgt----aaaaaacaaataactacaatGTAG----TATGACATGGCTAGGTGCAGTTTTAAGTTC------A------G--------GTTTTTATTGGTGAAGAGGAAGATGGATCAGGTGATTTCTGTTGTGTCCTGGCTTTCAGTGCCAATGGAAAAGATATCATTGTTGACTTTCCCCAGCAGTCTCACTGGACTGGGTTGCTATCAGAAATGGAGTTGGTGCCCAGTATTCATCCTGGGGTTACGTGAGTT---ATTTTTATGATTGCTAGATTTGCTTTGGGACGAATGGTTTTCTGTTGAATTAAGTTTAATAAATGAC--------------------------CTTTCTTA---ACTCAGTTGCTATTTTACAAATAGGTGTGATGGATGTCAGATGTTTCCTATCAATGGATCCAGATTCAAATGCAGAAACTGTGATGACTTTGATTTTTGTGAAACGTGTTTCAAGACCAAAAAACACAATACCAGGCATACATTTGGCAGAATAAATGAACCAGGTATGGCAGAATGTTTATATTCTCTCTTCCACCAAAT---AT--------------TAATGAAATACTTATTGTGGAC-CACAGTGTACTGGAATTTGTTATTTTAAGGTTCCTTTGCATATGGT-AATTCTGTAGAGTGAGTACAGTGAGACGGAAGTGACG--GTCCTACCCG
s panTro5.chr15               9616678 621 +  83230942 ttgt----aaaaaacaaataactacaatGTAG----TATGACATGGCTAGGTGCAGTTTTAAGTTC------A------G--------GTTTTTATTGGTGAAGAGGAAGATGGATCAGGTGATTTCTGTTGTGTCCTGGCTTTCAGTGCCAATGGAAAAGATATCATTGTTGACTTTCCCCAGCAGTCTCACTGGACTGGGTTGCTATCAGAAATGGAGTTGGTGCCCAGTATTCATCCTGGGGTTATATGAGTT---ATTTTTATGATTGCTAGATTTGCTTTGGGACGAGTGGTTTTCTGTTGAATTAAGTTTAATAAATGAC--------------------------CTTTCTTA---ACTCAGTTGCTATTTTACAAATAGGTGTGATGGATGTCAGATGTTTCCTATCAATGGATCCAGATTCAAATGCAGAAACTGTGATGACTTTGATTTTTGTGAAACGTGTTTCAGGACCAAAAAACACAATACCAGGCATACATTTGGCAGAATAAATGAACCAGGTATGGCAGAATGTTTATATTCTCTCTTCCACCAAAT---AT--------------TAATGAAATACTTATTGTGGAC-CACAGTGTACTGGAATTTGTTATTTTAAGCTTCCTTTGCATATGGT-AATTCTGTAGAGTGAGGACAGTGAGACGGAAGTGACG--GTCCTACCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74142687 621 -  99763055 ttgt----aaaaaacaaataactacaatGTAG----TATGACATGGCTAGGTGCAGTTTTAAGTTC------A------G--------GTTTTTATTGGTGAAGAGGAAGATGGATCAGGTGATTTCTGTTCTGTCCTAGCTTTCAGTGCCAATGGAAAAGATATCATTGTCGACTTTCCCCAGCAGTCTCACTGGACTGGGTTGCTATCAGAAATGGAATTGGTACCCAGTATTCATCCTGGGGTTACGTGAGTT---ATTTTTATGGTTGCTAGATTTGCTTTGGGACGAATGGTTTTCTGTTGAATTAAGTTTAATAAATGAC--------------------------CTTTCTTA---ACTCAGTTGCTATTTTACAAATAGGTGTGATGGATGTCAGATGTTTCCTATCAATGGATCCAGGTTCAAATGCAGAAACTGTGATGACTTTGATTTTTGTGAAACGTGTTTCAAGACCAAAAAACACAATACCAGGCATACATTTGGCAGAATAAATGAACCAGGTATGGCAGAATGTTTATATTCTCTCTTCCACCAAAT---AT--------------TAATGAAATACTTATTGTGGAC-CACTGTGTATTGGAATTTGTTATTTTAAGGTTCCTATGTATACGGT-AATTCTGTAGAGTGAGTACAGTGAGACGGAAGTGACG--GTCCTACCCG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       188089 621 -    281578 ttgt----aaaaaacaaataactacaatGTAG----TATGACATGGCTAGGTGCAGTTTTAAGTTC------A------G--------GTTTTTATTGGTGAAGAGGAAGATGGATCAGGTGATTTCTGTTCTGTCCTAGCTTTCAGTGCCAATGGAAAAGATATCATTGTCGACTTTCCCCAGCAGTCTCACTGGACTGGGTTGCTGTCAGAAATGGAGTTGGTACCCAGTATTCATCCTGGGGTTACGTGAGTT---ATTTTTATGGTTGCTAGATTTGCTTTGGGACGAATGGTTTTCTGTTGAATTAAGTTTAATAAATGAC--------------------------CTTTCTTA---ACTCAGTTGCTATTTTACAAATAGGTGTGATGGATGTCAGATGTTTCCTATCAATGGATCCAGATTCAAATGCAGAAACTGTGATGACTTTGATTTTTGTGAAACGTGTTTCAAGACCAAAAAACACAATACCAGGCATACATTTGGCAGAATAAATGAACCAGGTATGGCAGAATGTTTATATTCTTTCTTCCACCAAAT---AT--------------TAATGAAATACTTATTGTGGAC-CACAGTGTATTGGAATTTGTTATTTTAAGGTTCCTATGTATACAGT-AATTCTGTAGAGTGAGTACAGTGAGACGGAAGTGACG--GTCCTGCCCG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71050786 617 + 121039945 ttgt----aaaaaacaaataactacaatGTAC----TATGACATGGCTAGGTGCAGTTTTAAGCTC------A------G--------GTTTTTATTGGTGAAGAGGAAGATGGATCAGGTGATTTCTGTTCTGTCCTAGCTTTCAGTGCCAATGGAAAAGATATCATTGTCGACTTTCCCCAGCAGTCTCACTGGACTGGATTGCTATCAGAAATGGAGTTGGTGCCCAGTATTCATCCTGGGGTTACGTGAGTT---ATTTTTATGATTGCTAGATTTGCTTTGGGATGAATGGTTTTCTGTTGAATTAAGTTTAATAAATGAC--------------------------CTTTCTTA---ACTCAGTTGCTATTTTACAAATAGGTGTGATGGATGTCAGATGTTTCCTATCAATGGATCCAGATTCAAATGCAGAAACTGTGATGACTTTGATTTTTGTGAAACGTGTTTCAAGACCAAAAAACACAATACCAGGCATACATTTGGCAGAATAAATGAACCAGGTATGGCAGAATATTTATATTCTCTCTTCCACCAAAT---AT--------------TAATGAAATAC----TGTGGAC-CACAGTGTATTGGAATTTGTTATTTTAAGGTTCCTATGTATACGGT-AATTCTGTAGAGTGAGTACAGTGAGACGGAAGTGACG--GTCCTACCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164360506 622 - 169600520 ctgt----aaaaaacaaattactacaatGTAG----TGTGACATGGCTAGGTGCAGTTTCAGGTTC------A------G--------GTTTTTACTGGTGAAGAGGAAGATGGGTCAGGTGATTTCTGTTCTGTCCTAGCTTTCAGTGCCAATGGAAAAGATATCATTGTCGACTTTCCCCAGCAGTCTCACTGGACTGGGTTGCTGTCAGAAATGGAGTTGGTCCCCAGTATTCATCCTGGGGTTACGTGAGTT---GTTTTTATGATTGCTAGATTTGCTTTGGGACGAATGGTTTTCTGTTGAATTAAGTTTAATAAATGAC--------------------------CTTTCTTA---ACTCCGTTGCTGTTTTACAAATAGGTGTGATGGATGTCAGATGTTTCCTATCAATGGATCCAGATTCAAATGCAGAAACTGTGATGACTTTGATTTTTGTGAAACGTGTTTCAAGACCAAAAAACACAATACCAGGCACACATTTGGCAGAATCAATGAACCAGGTATGGCAGAATGTTTATATTCTCTCTTCCACCGAAT---AT--------------TAATGAAGTTCTTACTGTGGAC-CACAGGGTATTGGAATTTGTTATTTTAAGGTTCCTGTGTATTCGGTGAACTCTGTACAGTGAGTACAGTGAAGCGGAAGTGACA--GTCCTACCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165681067 622 - 171882078 ctgt----aaaaaacaaattactacaatGTAG----TGTGACATGGCTAGGTGCAGTTTCAGGTTC------A------G--------GTTTTTACTGGTGAAGAGGAAGATGGGTCAGGTGATTTCTGTTCTGTCCTAGCTTTCAGTGCCAATGGAAAAGATATCATTGTCGACTTTCCCCAGCAGTCTCACTGGACTGGGTTGCTGTCAGAAATGGAGTTGGTCCCCAGTATTCATCCTGGGGTTACGTGAGTT---GTTTTTATGATTGCTAGATTTGCTTTGGGACGAATGGTTTTCTGTTGAATTAAGTTTAATAAATGAC--------------------------CTTTCTTA---ACTCCGTTGCTGTTTTACAAATAGGTGTGATGGATGTCAGATGTTTCCTATCAATGGATCCAGATTCAAATGCAGAAACTGTGATGACTTTGATTTTTGTGAAACGTGTTTCAAGACCAAAAAACACAATACCAGGCACACATTTGGCAGAATCAATGAACCAGGTATGGCAGAATGTTTATATTCTCTCTTCCACCGAAT---AT--------------TAATGAAGTTCTTACTGTGGAC-CACAGGGTATTGGAATTTGTTATTTTAAGGTTCCTGTGTATTCGGTGAACTCTGTACAGTGAGTACAGTGAAGCGGAAGTGACA--GTCCTACCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       534793 622 +   2379783 ctgt----aaaaaacaaattactacaatGTAG----TGTGACATGGCTAGGTGCAGTTTCAGGTTC------A------G--------GTTTTTACTGGTGAAGAGGAAGATGGGTCAGGTGATTTCTGTTCTGTCCTAGCTTTCAGTGCCAATGGAAAAGATATCATTGTCGACTTTCCCCAGCAGTCTCACTGGACTGGGTTGCTGTCAGAAATGGAGTTGGTCCCCAGTATTCATCCTGGGGTTACGTGAGTT---GTTTTTATGATTGCTAGATTTGCTTTGGGACGAATGGTTTTCTGTTGAATTAAGTTTAATAAATGAC--------------------------CTTTCTTA---ACTCCGTTGCTGTTTTACAAATAGGTGTGATGGATGTCAGATGTTTCCTATCAATGGATCCAGATTCAAATGCAGAAACTGTGATGACTTTGATTTTTGTGAAACGTGTTTCAAGACCAAAAAACACAATACCAGGCACACATTTGGCAGAATCAATGAACCAGGTATGGCAGAATGTTTATATTCTCTCTTCCACCGAAT---AT--------------TAATGAAGTTCTTACTGTGGAC-CACAGGGTATTGGAATTTGTTATTTTAAGGTTCCTGTGTATTCGGTGAACTCTGTACAGTGAGTACAGTGAAGCGGAAGTGACA--GTCCTACCCA
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       492339 622 +   4116138 ctgt----aaaaaacaaattactacaatGTAG----TGTGACATGGCTAGGTGCAGTTTCAGGTTC------A------G--------GTTTTTATTGGTGAAGAGGAAGATGGGTCAGGTGATTTCTGTTCTGTCCTAGCTTTCAGTGCCAATGGAAAAGATATCATTGTCGACTTTCCCCAGCAGTCTCACTGGACTGGGTTGCTGTCAGAAATGGAGTTGGTCCCCAGTATTCATCCTGGGGTTACGTGAGTT---GTTTTTATGATTGCTAGATTTGCTTTGGGACGAATGGTTTTCTGTTGAATTAAGTTTAATAAATGAC--------------------------CTTTCTTA---ACTCCGTTGCTGTTTTACAAATAGGTGTGATGGATGTCAGATGTTTCCTATCAATGGATCCAGATTCAAATGCAGAAACTGTGATGACTTTGATTTTTGTGAAACGTGTTTCAAGACCAAAAAACACAATACCAGGCACACATTTGGCAGAATAAATGAACCAGGTATGGCAGAATGTTTATATTCTCTCTTCCACCGAAT---AT--------------TAATGAAGTTCTTACTGTGGAC-CACAGGGTATTGGAATTTGTTATTTTAAGGTTCCTGTGTATTCGGTGAACTCTGTACAGTGAGTACAGTGAAGCGGAAGTGACA--GTCCTACCCA
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53923126 625 +  58131712 ctgt-aaaaaAAAAAAAATTACTACAATGTAG----TGTGACATGGCTAGGTGCAGTTTCAGGTTC------A------G--------GTTTTTATTGGTGAAGAGGAAGATGGATCAGGTGATTTCTGTTCTGTCCTAGCTTTCAGTGCCAATGGAAAAGATATCATTGTCGACTTTCCCCAGCAGTCTCACTGGACTGGGTTGCTGTCAGAAATGGAGTTGGTCCCCAGTATTCATCCTGGGGTTACGTGAGTT---GTTTTTATGATTGCTAGATTTGCTTTGGGACGAATGGTTTTCTGTTGAATTAAGTTTAATAAATGAC--------------------------TTTTCTTA---ACTCTGTTGCTGTTTTACAAATAGGTGTGATGGATGTCAGATGTTTCCTATCAATGGATCCAGATTCAAATGCAGAAACTGTGATGACTTTGATTTTTGTGAAACGTGTTTCAAGACCAAAAAACACAATACCAGGCATACATTTGGCAGAATAAATGAACCAGGTATGGCAGAATGTTTATATTCTCTCTTCCACCGAAT---AT--------------TAATGAAGTTCTTACTGTGGAC-CACAGGGTATTGGAATTTGTTATTTTAAGGTTCCTATGTATTCGGTGAACTCTGTACAGTGAGTACAGTGAAGCGGAAGTGACA--GTCCTACCCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       544769 623 -   3636681 ctgt---aaaaaaccaaattactacaatGTAG----TGTGACATGGCTAGGTGCAGTTTCAGGTTC------A------G--------GTTTTTACTGGTGAAGAAGAAGATGGGTCAGGTGATTTCTGTTCTCTCCTAGCTTTCAGTGCCAATGGAAAAGATATCATTGTCGACTTTCCCCAGCAGTCTCACTGGACTGGGTTGCTGTCAGAAATGGAGTTGGTCCCCAGTATTCATCCTGGGGTTACGTGAGTT---GTTTTTATGATTGCTAGATTTGCTTTGGGACGAATGGTTTTCTGTTGAATTAAGTTTAATAAATGAC--------------------------CTTTCTTA---ACTCCGTTGCTGTTTTACAAATAGGTGTGATGGATGTCAGATGTTTCCTATCAATGGATCCAGATTCAAATGCAGAAACTGTGATGACTTTGATTTTTGTGAAACGTGTTTCAAGACCAAAAAACACAATACCAGGCACACATTTGGCAGAATAAATGAACCAGGTATGGCAGAATGTTTATATTCTCTCTTCCACCGAAT---AT--------------TAATGAAGTTCTTACTGTGGAC-CACAGGGTATTGGAATTTGTTATTTTAAGGTTCCTGTGTATTCGGTGAACTCTGTACAGTGAGTACAGTGAAGCGGAAGTGACA--GTCCTACCCC
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154557703 616 - 158406734 ttgt-------aaaaaaatagctaCGA-GTAG----TGTGATGTGGCTAGGTGCGGCTCTAAGTCG------A------G--------GTTTTCATTGGTGGA---GGAGATGTGTCAGGTCATCTCTGTTGTGTCCCAGCTTTCAGTGCCAACGGGAAAGACGTCATTGTCGACTTTCCCCAGCAGTCCCACTGGACGGGCTTGCTGTCAGAAATGGAGCTGGTGCCCAGTGTTCATCCTGGGGTTACGTGAGTG---ATTTTTATG-TTGCTAGATTTGCTTTGGGATGAATGGTTTTCTGTGGAATTAGGGTTAATAAATGAC--------------------------CTTTCTTA---ACTCAATGACTATTTTACAAATAGGTGTGATGGCTGTCAGATGTTTCCTATCAATGGCTCCAGATTCAAATGCAGAAACTGTGATGACTTTGATTTCTGTGAAACGTGTTTCAAGACCAAAAAACACAATACCAGGCATACATTTGGCAGAATAAATGAACCAGGTATGGCAGAATGTTTATATTCTCTCTTCCACCAAATGTTAT--------------GAATGAAATACTTACTGTGGAC-CACAGTGTATTGGAATTTGCTATTTTAAGGTTCATATGTATATAGTGAGCTCTATAGAGTGAGTACAGTGAGGTGG-AGTGATG--GTCCTACCCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             387677 624 -   2682657 ttgtaaaaaAAAAAAAAAAAGCTCCAG-GGAG----TATGATGTGGCTAGGTGCAGTTATAAGTGG------A------G--------GTTTTTCTTGGTGAA---GGAGGTGTGTCAGGTGATCTCTGTTCTGTCCCAGCTTTCAGTGCCAATGGGAAAGATGTCATTGTCGACTTTCCGCAGCAGTCTCACTGGACTGGCTTGCTGTCAGAAATGGAGCTGGTGCCCAGTGTTCATCCTGGGGTTACGTGAGTG---ATTTTTATGATTGCTAGATTTGCTTTGGGATGAATGGTTTTCTGTTGAATTAGGTTTAATAAATGAC--------------------------CTTTCTTA---ACTCAATGGCTATTTTACAAATAGGTGTGATGGCTGTCAAATGTTTCCTATCAATGGCTCCAGATTCAAGTGCAGAGACTGTGATGACTTTGATTTCTGTGAAACGTGTTTCAAGACCAAAAAACACAATACGAGGCATACGTTTGGCAGAATAAACGAACCAGGTATGGCAGAATGTTTACACTCTCTCTTCCACCAAATGTGAT--------------TAATGAAATACTTGTTGTGGGC-CACAGTGTATTAGAATTTGTTATTTCAAGGTTCATATGTAAACAGTGAGCTCTGTGGAGTGAGTGCAGTGAGATGG-AGTGAAG--GTCCTACCCT
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       413223 615 -   2086007 ttgt------ggaaaaaatagcTCCGC-GTAG----TATGATGTGGCCAGGTGCAGTTCTAAGTCG------A------G--------GTTTTTATTGGTGA------AGATGTGTCAGGCGATCTCTGTTCTGTCCCAGCTTTCAGTGCCAATGGGAAAGATGTCATTGTCGACTTTCCCCAGCAGTCTCACTGGACTGGCTTGCTGTCAGAAATGGAGTTGGTGCCCAGTGTTCATCCGGGGGTTACGTGAGTG---ATTTTTATGATTGCTAGATTTGCTTTGGGGTGAATGGTTTTCTGTTGAATTAGGTTTAATAAATGAC--------------------------CTTTCCTA---ACTCAATGGCTGTTTTACAAATAGGTGTGATGGCTGTCAGATGTTTCCTATCAATGGCTCCAGATTCAAATGCAGAAACTGTGATGACTTTGATTTCTGTGAAACGTGTTTCAAGACCAAAAAACACAATACCAGGCACACATTTGGCAGAATAAATGAACCAGGTATGGCAGAAAGTCTGTGTTCTCTCTTCCACCAAATGTTAT--------------TAATGAAACAGTCACTGTGGAC-CACAGTGTATTGGAATTTGTTATTTTAAGGTTCGTGCGTATACAGCGAGCTCTGTAGAGTGAGTGCAGTGAGACGG-AGTGATG--GTCCTGCCCT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       473632 616 +   3831555 ttgt-------aaagaaataactacga-GTAG----TATGATGT-GCTAGGTGCAGCTCTACGTCG------A------A--------GTTTGCATTGGTGAA---GGAGATGTGTCAGGTGATCTCTGTTGTGTCCCAGCTTTCAGTGCCAATGGGAAAGATGTCATTGTCGACTTTCCCCAGCAGTCTCACTGGACTGGCTTGCTGTCAGAAATGGAGTTGGTGCCCAGTGTTCATCCTGGGGTTACGTGAGTG---ATTTTTATGATTGCTGGATTTGCTTTGGGATGAATGGTTTTCTGTTGAATTAGGTTTAATAAATGAC--------------------------CTTTCTTA---ACTCAGTGGCTATTTTACAAATAGGTGTGATGGCTGTCAGATGTTTCCTATCAATGGCTCCAGATTCAAATGCAGAAACTGTGATGACTTTGATTTCTGTGAAACGTGTTTCAAGACCAAAAAACACAATACCAGGCATACATTTGGCAGAATAAATGAACCAGGTATGGCAGAATGTTTATATTCTCTCTTCCACCAAATGTTAT--------------TGATGAAATACTTATTGTGGAC-CACAGTGTATTGGAATTTGTTATTTTAAGGTTCATGTGTATACAGCGAGCTCTGTTGAGTGAGTACAGTGAAACGG-AGTGATG--GTCCTACCCT
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13542953 640 +  16154928 ttgt----aaaacataaataactacagtataa----catcacaTGGCCAGGTACAGTTTTAATTTTAATTTTA------A--------GTTTTTATTGGTGATAAAGAAGATG-TTCAGGTGATTTCCGTTCTGTCCTAGCTTTCAGTGCCAATGGAAAAGATATCATTGTCGACTTTCCTCAGCAGTCTCACTGGACTGGTTTGTTATCAGAAATGGAGTTGGTGCCTAGTGTTCATCCGGGGGTTACGTGAGTTTTTATTTTTATGATTGCTAGATTTGTGTGGGGAGGAATGGTTTTCTTTTGAATTAGGTTTAATAACTGAT---A-------------------AGTTTTTCTTATCTATTCAACGGCTATTTTAAAAATAGGTGTGATGGCTGTCAAATGTTTCCTATCAATGGATCCAGATTCAAATGTAGAAACTGTGATGACTTTGATTTTTGTGAAACGTGTTTCAAGACCAAAAAGCACAACACCAGGCATACATTTGGCAGAATAAATGAACCAGGTATGACAGAATGGCTATGTTCTTTCTTCTACCAAATATTAT--------------TAATGAGGCAATTATTGTGGAC-ACATATGTATTGGAATTTGCTCTTTTAAGGTTCATGTGTATACAGTGAGCACCGTAGAGTGAGTACAGTGAGACAAAAGGGGTG--TTCTTACCCA
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             496434 643 +   3845361 atat----aaaaCCTAAAT-----TAATATAA----TATCACATGGCAGAGTATAGCTTTAATTTCCAGTGTA------G--------ATTTTTACTGGTGATGAAGATGA---TTCAGGTGATTTCCACTCTGTCCCAGCTTTCAGTGCTAATGGAAAAGACATCATCGTGGACTTCCCCCAGCAGTCGCACTGGACAGGCCTGTTGTCAGAGATGGAGCTGGTGCCTAGTGTTCACCCTGGAGTCACGTGAGTTCTGATTTTTATCATTGCTAGATTTGTTTGCGGAAGAATGGGTTT-TTTTGAATTAAGTGTAATAAATGATCTCA-------------------TCTTTTTCTTATCTGTTAAATGGCTATTTTAAAAACAGATGTGATGGCTGTCAAATGTTTCCTATCAATGGATCCAGATTCAAATGTAGAAACTGTGATGACTTTGATTTTTGTGAAATGTGTTTCAAGACCAGAAAACACAACACCAGGCATACATTTGGCAGAATAAATGAACCAGGTATGACAAAATGATTAAGTTCTCTCTTT--CCAAATATTATTATTTTTGACTTGATAATAAGATAGTTATCATGGAC-ACAAATGTAGGGGAGCTTACTTTTGTAAGGCTCCTGTGGATACAATGAGTGT--GACAGTGAGCACAGTGAGATAGAA--GGTG--GTCTTACCCA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56164809 606 + 145441459 TTAT----CACATGTGAGCAACTACAGCATAG----TAT-ACAGAGCCA--CACTGGTTTAC-TGT------A------G--------GTATATGCTGACTTTAAACGATCC---TCAAGGAGTTTCTGTCCTGTGCTAGCTTTCAGTGCCAATGGGAAAGACATCATTGTGGACTTCCCCCAGCAGTCCCACTGGACTGGGTTGCTGTCAGAAATGGAGTTGGTGCCTAGTATTCATCCAGGGGTTACGTGAGTTCCTGATTCTATGATTGCTGAATTTCTTTGGGGAGGAAGTGTTTTCTTTTAAAATTA-TTTAA-AAGTGACCTCA-------------------TTGTTTTCTTATCAACTCA---TCTATTTTAAAAACAGGTGTGACGGCTGTCAGACTTTTCCTATCAATGGATCCAGATTCAAATGTAGAAACTGTGATGACTTTGATTTTTGTGAAACATGTTTCAAGACAAAAAAACACAACACCAGGCATACTTTCGGCAGGATTAATGAGCCAGGTAGATCTGAATGCTTATGTTTTGTCTTCCATCAAATATCAC--------------TAGTTAGGTAATGACT------------------GGAGTTAGCTCTT---AAGTTCAGATGTGTACAGTGAGTGTTGTAGAAGGAGCACAGGTAGAGAGAAGGGGCA--GTCGGACCCA
i mm10.chr7                 C 0 I 29
s canFam3.chr3               60069829 645 -  91889043 ctgt----aaaacataaataactacaatataat---tatcacaTGATTAGATATAGTTTTAATTTT------A------ACATAACTTCTTTTTATTGGTGAC---CAAGATGTTTCA-GCAATTTCTATTGTGTCCTAGCTTTCAGTGCAAATGGAAAAGATGTCATTGTTGACTTTCCTCAGCAGTCTCACTGGACTGGGCTGTTGTCAGAAATGGAGTTGGTGCCTAGTGTTCATCCTGGGGTTACGTGAGTT---AATTTTTATATTGCTAGATTTG-TTTGGGAGGAATGGTTTTCTTTGGGATTAAATTTAATAAATTACCTTAATTTAAGAAATGACCATATTTTTTTTCTTACTAATCCAATGGTTGTTTTAAAAATAGGTGTGATGGCTGTCAGATGTTTCCTATCAATGGATCTAGATTCAAATGCAGAAACTGTGATGACTTTGATTTTTGTGAAACCTGTTTCAAGACCAGAAAACACAACACTAGACATACATTTGGCAGAATAAATGAACCAGGTATGGTAGAATGGTTATGCTCTTT-TTCATTAAAAT---AT--------------TATTGAAATCATCATTGTGCACACACATTATTT---AGTTTGGTCTTTAAAGTTT-------ATATGGTGAGCACTGCACGGTGTACACAATAAAACAGGAAAGATG--GTCTTACACA
i canFam3.chr3              C 0 I 1
s dasNov3.JH562051             453990 602 +    563711 ttgt----aaaac----ataactatgatataataaatatcacaTGACTAGGTACAGTTTTAATTTT------AATACTGG--------CTTTTTACTG----------------------------CTGTTCTGCCCTAGCTTTTAGTGCCAATGGAAAGGATGTCATTGTCGACTTTCCTCAGCAGTCTCACTGGACTGGGTTGTTATCAGAAATGGAGTTGGTGCCTAGTATTCATCCTGGAGTTACGTAAGTT-TTGACTTTAGGATCATTAGATCTGTTTTGGGAGAAATGGTTGTCTTTTGAATAAAGTTTAATAAATGAC-------------------TTTGTTTTTTTCTCATCAATTCAATGAATATTTTAAAAACAGGTGTGATGGCTGTCAAATGTTTCCCATCAATGGATCCAGATTCAAATGCAGAAACTGTGATGACTTTGATTTTTGTGAAACCTGCTTCAAGACCAGAAAACATAACACCAGGCATACATTTGGCAGAATAAATGAACCAGGTATGGTAGAATGGTTATGTTCTCTCTTCCATTGGGCACTAT--------------TAATGGTGTAATTGTTGTGGAT-GCAAATGTATGCTATTTTGTTCTTTTAAGGTTCGTATTT---------------TATGGTGAGCTCAGTAAAGCAGAAAAGACAGTGTTCTACTTA
i dasNov3.JH562051          C 0 C 0

a score=226288.000000
s hg38.chr15_KI270851v1_alt    224110 21 +    263054 CTGATGACTGGCTGGC----TTTTT
s panTro5.chr15               9617299 21 +  83230942 CTGATGACTGGCTGGC----TTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74143308 21 -  99763055 CTGATGACTGGCTGGC----TTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       188710 21 -    281578 CTGATGACTGGCTGGC----TTTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71051403 21 + 121039945 CTGATGACTGGCTGGC----TTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164361128 21 - 169600520 CTGATGACTGGCTGGC----TTTTC
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              165681689 21 - 171882078 CTGATGACTGGCTGGC----TTTTC
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011934v1       535415 21 +   2379783 CTGATGACTGGCTGGC----TTTTC
i macNem1.NW_012011934v1    C 0 I 1
s cerAty1.NW_012001462v1       492961 21 +   4116138 CTGATGACTGGCTGGC----TTTTC
i cerAty1.NW_012001462v1    C 0 I 1
s chlSab2.chr26              53923751 21 +  58131712 CTGATGACTGGCTGGC----TTTCC
i chlSab2.chr26             C 0 I 1
s manLeu1.NW_012102332v1       545392 21 -   3636681 CTGATGACTGGCTGGC----TTTTC
i manLeu1.NW_012102332v1    C 0 I 1
s calJac3.chr6              154558319 21 - 158406734 CTGATGACTGGCCGAC----TTTTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             388301 21 -   2682657 CTGGTGACTGGCTGGC----TGTTA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       413838 21 -   2086007 CTGATGACTGGCTGGC----TTTTT
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       474248 21 +   3831555 CTGATGACTGGCTGGt----ttttt
i aotNan1.NW_018503298v1    C 0 I 310
s proCoq1.NW_012148396v1     13543593 24 +  16154928 CTGATGACTGgccatctgtttttt-
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             497077 20 +   3845361 CTGATGACTGGCCCTC----TTTT-
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60070475 21 -  91889043 TTGAAACCTTGCTATC----TTTTT
i canFam3.chr3              I 1 I 5
s dasNov3.JH562051             454592 19 +    563711 CTGATGATTTGCTATG----TTT--
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56165415 29 + 145441459 I

a score=179359.000000
s hg38.chr15_KI270851v1_alt    224131 29 +    263054 -AAAAAAATCAGGATGGGGTATCGGGGAAG
s panTro5.chr15               9617320 29 +  83230942 -TAAAAAATCAGGATGGGGTATCGGGGAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74143329 28 -  99763055 --AAAAAATCAGGACGGGGTGTCGGGGAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       188731 28 -    281578 -AAAAAAATCAGGACGGGGTGTC-GGGAAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71051424 29 + 121039945 -AAAAAAATCAGGATGGGGTATCAGGGAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164361150 29 - 169600520 -AAAAAAATCAAGACGGCGTATCAGGGAAG
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              165681711 29 - 171882078 -AAAAAAATCAAGACGCCGTATCAGGGAAG
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011934v1       535437 29 +   2379783 -AAAAAAATCAAGACGGCGTATCAGGGAAG
i macNem1.NW_012011934v1    I 1 C 0
s cerAty1.NW_012001462v1       492983 29 +   4116138 -AAAAAAATCAAGACGGCGTATCGGGGAAG
i cerAty1.NW_012001462v1    I 1 C 0
s chlSab2.chr26              53923773 29 +  58131712 -AAAAAAATCAAGATGGCGTATCAGGGAAG
i chlSab2.chr26             I 1 C 0
s manLeu1.NW_012102332v1       545414 29 -   3636681 -AAGAAAATCAAGACGGCGTATCGGGGAAG
i manLeu1.NW_012102332v1    I 1 C 0
s calJac3.chr6              154558340 29 - 158406734 -AAAAAATTAGGGATGGGGTATCGGGGAAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             388322 29 -   2682657 -AAAAAATTAGGGGTGTGGTATCGGGGAAG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       413859 29 -   2086007 -AAAAAATTAGGGATAGGGTATTGGGGAAG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       474579 29 +   3831555 -AAAAAACTAGGAATGGGGTATCGGGGAAG
i aotNan1.NW_018503298v1    I 310 C 0
s proCoq1.NW_012148396v1     13543617 14 +  16154928 -aagaaa---------------cggggagg
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             497097 14 +   3845361 -AAGAAG---------------GAGGGGGG
i otoGar3.GL873689          C 0 C 0
s canFam3.chr3               60070501 20 -  91889043 -AAGCAA-------TGAGGGACTATGGA--
i canFam3.chr3              I 5 C 0
s dasNov3.JH562051             454611 29 +    563711 ATAAGAGTGAGGGAAGGGAAAGTGGGGAA-
i dasNov3.JH562051          C 0 C 0
e mm10.chr7                  56165415 29 + 145441459 I

a score=527172.000000
s hg38.chr15_KI270851v1_alt    224160 45 +    263054 AATTAGAATAACTAGGCTTGTTTGCTTGTTTTTCCATAAAGAAAC
s panTro5.chr15               9617349 45 +  83230942 AATTAGACTAACTAGGCTTGTTTGCTTGTTTTTCCATAAAGAAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74143357 45 -  99763055 AATTAGAATAACTAGGCTTGTTTGCTTGTTTTTCCATAAAGAAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       188759 45 -    281578 AATTAGAATAACTAGGCTTGTTTGCTTGTTTTTCCATAAAGAAAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71051453 45 + 121039945 AATTAGAATAACTAGGCTTGTTTGCTTGTTTTTCCATAAAGAAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164361179 44 - 169600520 AAATAGAATAACTAGGCTTATTTGCTTGTATTTCCATT-AAAAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165681740 44 - 171882078 AAATAGAATAACTAGGCTTATTTGCTTGTATTTCCATT-AAAAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       535466 44 +   2379783 AAATAGAATAACTAGGCTTATTTGCTTGTATTTCCATT-AAAAAC
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       493012 45 +   4116138 AAATAGAATAACTAGGCTTATTTGCTTGTATTTCCATTAAAAAAC
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53923802 45 +  58131712 AAATAGAATAACTAGGCTTATTTGCTTGTATTTCCATTAAAAAAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       545443 45 -   3636681 AAATAGAATAACTAGGCTTATTTGCTTGTATTTCCATTAAAAAAT
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154558369 45 - 158406734 AATTAGAATAACTAGGCTTGTTTGCTCTTATTTCCATAAGGAAAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             388351 45 -   2682657 AGTTAGAATAACTAGGCTTGTTTGCTCGTATTTCCATAAGGAATC
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       413888 45 -   2086007 AATTAGAATAACTAGGCTTGTTTGCTTGTATTTCCATAAGGAAAC
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       474608 45 +   3831555 AATTAGAATAACCAGGCTTGTTTGCTTGTATTTCCATAAGGAAAC
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13543631 41 +  16154928 aattagaa----taggtatgtttgcttgtatttccataaagaaac
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             497111 45 +   3845361 AGTGAGAATAACTAGGTTTGTTTGCTTGTATTTTCATTAAAAAAT
i otoGar3.GL873689          C 0 I 569
s mm10.chr7                  56165444 45 + 145441459 TTTTAGAGTAGTAAGGTTTGCTTGTCTGCATTTCCATGAGGAAAT
i mm10.chr7                 I 29 C 0
s canFam3.chr3               60070521 44 -  91889043 AATTAGAATAACATGGTTTGTTTGGTTGTATTTCCATAAAGAAT-
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             454640 35 +    563711 ---TACAAAA-------CTATTTGCTTGTATTTCCATAAAGAAAT
i dasNov3.JH562051          C 0 C 0

a score=1244826.000000
s hg38.chr15_KI270851v1_alt    224205 111 +    263054 ATTAAAAGAATCTCAAGAAACTAGTAAG-TGTTTAGTTGCGTG--GC-ATGTGGAATTGGTTAGATGGAGAGTGAGTGTTTTAATTTGTATACCTTTTATTATA--------tttttcattgt
s panTro5.chr15               9617394 111 +  83230942 ATTAAAAGAATCTCAAGAAACTAGTAAG-TGTTTAGTTGCATG--GC-ATGTGGAATTGGTTAGATGGAGAGTGAGTTTTTTAATTTGTATACCTTTTATTATA--------tttttcattgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74143402 111 -  99763055 ATTAAAAGAATCTCAAGAAACTAGTAAG-TGTTTAGTTGCATG--GC-ATGTGGAATTGGTTAGATGGAGAGTGAGTTTTTTAATTTATATACCTTTTATTGTA--------tttttcattgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       188804 111 -    281578 ATTAAAAGAATCTCAAGAAACTAGTAAG-TGTTTAGTTGCATG--GC-ATGTGGAATTGGTTAGATGGAGAGTGAGTTTTTTAATTTATATACCTTTTATTGTA--------tttttcattgt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71051498 110 + 121039945 ATTAAAAGAATCTCGAGAAAC-AGTAAG-TGTTTAGTTGCATG--GC-ATGTGGAATTGGTTAGATGGAAAGTGAGTTTTTTAATTTATATACCTTTTATTATA--------tttttcattgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164361223 111 - 169600520 GTTAAAAGAATCTCAAGAAACTAGTCAC-TGTTTAGTTGCAGG--GC-ATGTGGAATTGGTTAGATGGAGAGTGAGTTTTTAAAGTTATATACCTTTTATTATA--------tttttcattgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165681784 111 - 171882078 GTTAAAAGAATCTCAAGAAACTAGTCAC-TGTTTAGTTGCAGG--GC-ATGTGGAATTGGTTAGATGGAGAGTGAGTTTTTAAAGTTATATACCTTTTATTATA--------tttttcattgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       535510 111 +   2379783 GTTAAAAGAATCTCAAGAAACTAGTCAC-TGTTTAGTTGCAGG--GC-ATGTGGAATTGGTTAGATGGAGAGTGAGTTTTTCAAGTTATATACCTTTTATTATA--------tttttcattgt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       493057 111 +   4116138 GTTAAAAGAATCTCAAGAAACTAGTCAC-TGTTTAGTTGCATG--GC-ATGTGGAATTGGTTAGATGGAGAGTGAGTTTTTAAATTTATATACCTTTTATTATA--------tttttcattgt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53923847 111 +  58131712 ATTAAAAGAATCTCAAGAAACTAGTCAC-TGTTTAGCTGCATG--GC-ATGTGGAATTGGTTAGATGGAGAGTGGGTTTTTAAATTTATATACCTTTTATTATA--------tttttcattgt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       545488 111 -   3636681 GTTAAAAGAATCTCAAGAAACTAGTCAC-TGTTTAGTTGCATG--GC-ATGTGGAATTGGTTAGATGGAGAGTGAGTTTTTAAATTTATATACCTTTTATTATA--------tttttcattgt
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154558414  99 - 158406734 ---AAAAGAATCTCAAGAAATTAGTAAG-TGTTTA--TGTGTG--GC-ATTTGGAATTGGTTAGATGGAGAG---GTTTTT----TTGTATACCTTTTATTATA--------TTTTTCATTGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             388396 101 -   2682657 ---AAAAGAATCTCAGGAAACTTGTAAG-TGTTTAGTTGCATG--GC-ATTTGGAATTGGTTAGATGGAGAG---GTTTTT----TTGTATACCTTTTATTGTA--------TTTTTCGTTGG
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       413933 101 -   2086007 ---AAAAGAATCTCGAGAAACTAGTTAG-TGTTTAGTTGCGTG--GC-ATTTGGAATTGGTTAGATGGGGAG---GTTTTT----TTGTATACCTTTTATTATA--------TTTTTCATTGG
i cebCap1.NW_016107707v1    C 0 C 0
s aotNan1.NW_018503298v1       474653 100 +   3831555 ---AAAAGAATCTCAAGAAACTAGTAAG-TGTTTGGTTGCATG--GC-ATTTGGAATTGGTTAGATGGAGAG---G-TTTT----TTATATACCTTTTATTATA--------TTTTTCATTGG
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13543672 111 +  16154928 attaaaagaatctcaagaaactaatTAG-TGTTTAGTTGCATG--GA-GTATGGAATTGGTTAGATGGAGAGTGAGTCTTTTTATTTGTATGCCTTTTATTATG--------ttttttattgt
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             497725 109 +   3845361 actaaaagaaTCTCAAGAAATGAATTAG-AGTTTAGTTGCATG--GA-GTATGGAACTGGTTAGATGGATAATGAG--TTTTTATTTGTATGCCtttttaaata--------tattttattat
i otoGar3.GL873689          I 569 C 0
s mm10.chr7                  56165489  97 + 145441459 GTTAGAATTACCTCCAGAAACTAAGAGCATGTTTAGTTGGTGGATGC-AGTGGAAATTGG-----TGGAGTGTAAGTTTTC-----------GTTTGTATGATA--------TATTTTATTG-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60070565 109 -  91889043 ATTAAAAGGGTCTCAAGAAACTAATAAA-TGTTTTGTTGCATT--GG-GTGTAGAATTGGATAGATGGAGAG----------AGTCTGCATGTCTTTTATTATATCTTTTTTttttttattgt
i canFam3.chr3              C 0 C 0
s dasNov3.JH562051             454675 110 +    563711 GTAAGAAGGATCTCAAGAAACTAATAAG-TGTTCAGTTGCATA--GTGATGTGGAATTGGACTGATGGAGAGTAAGGCTTTTTACTTG--TGCTCTTAATATTG--------TTTTATATTGT
i dasNov3.JH562051          C 0 N 0

a score=261046.000000
s hg38.chr15_KI270851v1_alt    224316 23 +    263054 ggcaaaatatatttaa---------------------------------------------cttaaaa
s panTro5.chr15               9617505 23 +  83230942 ggcaaaatatatttaa---------------------------------------------cttaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74143513 23 -  99763055 ggcaaaatatatataa---------------------------------------------cttaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       188915 23 -    281578 ggcaaaatatatttaa---------------------------------------------cttaaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71051608 23 + 121039945 ggcaaaatatatataa---------------------------------------------cttaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164361334 23 - 169600520 ggcaaaatatatataa---------------------------------------------cttaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165681895 23 - 171882078 ggcaaaatatatataa---------------------------------------------cttaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       535621 23 +   2379783 ggcaaaatatatataa---------------------------------------------cttaaaa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       493168 23 +   4116138 ggcaaaatatatataa---------------------------------------------cttaaaa
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53923958 23 +  58131712 ggcaaaatatatataa---------------------------------------------cttaaaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       545599 23 -   3636681 ggcaaaatatatataa---------------------------------------------cttaaaa
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154558513 23 - 158406734 GGCAAAGTATATATAA---------------------------------------------CTTAAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292             388497 23 -   2682657 GGTAAAATATATATAA---------------------------------------------CTTAAAA
i saiBol1.JH378292          C 0 C 0
s cebCap1.NW_016107707v1       414034 23 -   2086007 GGCAAAATATATATAA---------------------------------------------CTTAAAA
i cebCap1.NW_016107707v1    C 0 N 0
s aotNan1.NW_018503298v1       474753 23 +   3831555 GGCAAAATATATATAA---------------------------------------------CTTAAAA
i aotNan1.NW_018503298v1    C 0 C 0
s proCoq1.NW_012148396v1     13543783 23 +  16154928 ggcaaaaaatatataa---------------------------------------------cttaaaa
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             497834 68 +   3845361 GACAAAATATATAGAGGGTGCCACGAAAATATATACACATTTTAAGAAAGGAAAAAATTGTATTAAAA
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56165586 19 + 145441459 ----AACTACACAGAA---------------------------------------------CCCAGAA
i mm10.chr7                 C 0 I 1
s canFam3.chr3               60070674 23 -  91889043 ggcagaatatgtacaa---------------------------------------------cacagaa
i canFam3.chr3              C 0 C 0

a score=23698.000000
s hg38.chr15_KI270851v1_alt    224339 2 +    263054 tt
s panTro5.chr15               9617528 2 +  83230942 tt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74143536 2 -  99763055 tt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       188938 2 -    281578 tt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71051631 2 + 121039945 tt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164361357 2 - 169600520 tt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165681918 2 - 171882078 tt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       535644 2 +   2379783 tt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       493191 2 +   4116138 tt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53923981 2 +  58131712 tt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       545622 2 -   3636681 tt
i manLeu1.NW_012102332v1    C 0 C 0
s calJac3.chr6              154558536 2 - 158406734 TT
i calJac3.chr6              C 0 n 0
s saiBol1.JH378292             388520 2 -   2682657 TT
i saiBol1.JH378292          C 0 n 0
s aotNan1.NW_018503298v1       474776 2 +   3831555 TT
i aotNan1.NW_018503298v1    C 0 N 0
s proCoq1.NW_012148396v1     13543806 2 +  16154928 tt
i proCoq1.NW_012148396v1    C 0 C 0
s otoGar3.GL873689             497902 2 +   3845361 TT
i otoGar3.GL873689          C 0 C 0
s mm10.chr7                  56165606 2 + 145441459 CC
i mm10.chr7                 I 1 C 0
s canFam3.chr3               60070697 2 -  91889043 tt
i canFam3.chr3              C 0 C 0

a score=31981.000000
s hg38.chr15_KI270851v1_alt    224341  8 +    263054 a---------------------gccactt
s panTro5.chr15               9617530  8 +  83230942 a---------------------gccactt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74143538  8 -  99763055 g---------------------gccactt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       188940  8 -    281578 a---------------------gccactt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71051633  8 + 121039945 a---------------------gccactt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164361359  8 - 169600520 a---------------------gccattt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165681920  8 - 171882078 a---------------------gccattt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       535646  8 +   2379783 a---------------------gccattt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       493193  8 +   4116138 a---------------------gccattt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53923983  8 +  58131712 a---------------------gccattt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       545624  8 -   3636681 a---------------------gccattt
i manLeu1.NW_012102332v1    C 0 C 0
s proCoq1.NW_012148396v1     13543808  8 +  16154928 a---------------------gccgttt
i proCoq1.NW_012148396v1    C 0 I 1
s otoGar3.GL873689             497904 29 +   3845361 ATAATACTCAGTATATGCTGGTGACACTT
i otoGar3.GL873689          C 0 I 135
s mm10.chr7                  56165608  6 + 145441459 -----------------------AGATTT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               60070699  8 -  91889043 ---------------------tgccattt
i canFam3.chr3              C 0 I 2
e saiBol1.JH378292             388522  0 -   2682657 I
e calJac3.chr6              154558538  0 - 158406734 I

a score=943111.000000
s hg38.chr15_KI270851v1_alt    224349 160 +    263054 agtcattttctaagtttataattcagggtattaagtaccttaagtacagtgttgcacaaccatcacaactttctcttaccaaaac-tt-ttcaccactccgatcagaaactctgtacccattaagcaatttaactgccctacttccccttaccccaaccctg
s panTro5.chr15               9617538 160 +  83230942 agtcattttctaagtttataattcagggtattaagtaccttaagtacagtgttgcacaaccatcacaactgtctcttaccaaaac-tt-ttcaccactctgatcagaaactctgtacccattaagcagtttaactgccctacttccccttaccccaaccctg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74143546 160 -  99763055 agtcattttctaagtttataattcagggtattaagtaccttaagtacagtgttgcacaaccatcacaactgtctcttaccaaaac-tt-ttcaccactccgatcagaaactctgtacccattaagcaatttaactgccctacttctccctaccccaaccctg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       188948 160 -    281578 agtcattttctaagtttataattcagggtattaagtaccttaagtacagtgttgcacaaccatcacaactttctcttaccaaaac-tt-ttcaccactccgatcagaaactctgtacccattaaggaatttaactgccctacttccccttaccccaaccctg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71051641 154 + 121039945 aatcattttctaagtttataattcagggtattaagtacctta-----agtgttgcacaaccatcacaactgtctcttacc-aaac-tt-ttcaccactccgatcagaaactctgtatccattaagcggtttaactgccctacttccccttaccccagccctg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164361367 160 - 169600520 aagcatttttgaagtttataattcggggtattaagtaccttaagtacagtgttgcacaaccatcacagctgtctattaccaaaac-tt-ttcaccactccgatgaaaaactgtgtacccagtaagcaatttaactgccctacttccctctaccccacccctg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165681928 160 - 171882078 aagcatttttgaagtttataattcggggtattaagtaccttaagtacagtgttgcacaaccatcacagctgtctattaccaaaac-tt-ttcaccactccgatgaaaaactgtgtacccagtaagcaatttaactgccctacttccctctaccccacccctg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       535654 160 +   2379783 aagcatttttgaagtttataattcggggtattaagtaccttaagtacagtgttgcacaaccatcacagctgtctattaccaaaac-tt-ttcaccactccgatgaaaaactgtgtacccagtaagcaatttaactgccctacttccctctaccccacccctg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       493201 160 +   4116138 aagcattttcgaagtttataattcggggtattaagtaccttaagtacagtgttgcacaaccatcacagctgtctattaccaaaac-tt-ttcaccactccaatgaaaaactctgtacccagtaagcaatttaactgccctacttccccctaccccacccctg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53923991 159 +  58131712 aagcattttcaaagtttataatttggggtattaagtaccttaagtacagtgttgcacaaccatcacagctgtctattaccaaaac-tt-ttcatcactccgatgaaaaactctgtacccagtaagcagtttgactgccctg-cttcccctcccccacccctg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       545632 160 -   3636681 aagcattttcgaagtttgtaattcggggtattaagtaccttaagtacagtgttgcacaaccatcacagctgtctattaccaaaac-tt-ttcaccactccgatgaaaaactctgtacccagtaagcaatttaactgccctacctccccctaccccacccctg
i manLeu1.NW_012102332v1    C 0 C 0
s proCoq1.NW_012148396v1     13543817 161 +  16154928 agtcagtttctgagtttacaacttgggatattaagtacatttagtacagtgccacacaaccatcaccactatctatttccaaaac-ttgtctgtcactccaaacagaaactctgtacccattaagcaatttgacttccccacgtctccctttcccgttcctg
i proCoq1.NW_012148396v1    I 1 C 0
s otoGar3.GL873689             498068 150 +   3845361 AATTAGCttctgagtttataatttgaggtatta---------agcacaatgccacacaacaatcaccac--tctatttccaaaac-ttgtccactgccccaaagagaaactctgtgcccattaagcaatttgacttccacatttgcccctttgacattcctg
i otoGar3.GL873689          I 135 C 0
s mm10.chr7                  56165614 125 + 145441459 TGCCATTAT--AAATTTATAGT---------------------ATATGGTCCTGTACAACTGGTGCTTTTATGTATTTCCAAAACATT-TGTGTCTACCCAAACAGACAAT------------AGCA-TTTAACTTTCTCATCTTCTCTTCCCTATCCCCTG
i mm10.chr7                 C 0 N 0
s canFam3.chr3               60070709 136 -  91889043 aatcacttt-ggagtgtgcaattcagag-------------------aatgttgcacaaccattaccactatgtatttccaaaac-ttgttgatgactacagacagaaactgta---ccattaagcga--taattccccattctcccctttcccagtccctg
i canFam3.chr3              I 2 C 0
e saiBol1.JH378292             388522   0 -   2682657 I
e calJac3.chr6              154558538   0 - 158406734 I

a score=543033.000000
s hg38.chr15_KI270851v1_alt    224509 90 +    263054 gtaaccttgaatctaactttggtctctacgattatgaccactccagacatctcatctagatggaacca------tgtaagatttatccttttgtgt
s panTro5.chr15               9617698 90 +  83230942 gtaaccttgaatctaactttggtctctatgaatatgaccactccagatacctcatctaggtggaacca------tgtaagatttatccttttgtgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74143706 76 -  99763055 gtaaccttgaatctaactttg--------------gaccactccagatacctcatctaggtggaacca------tgtaagatttatccttttgtgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       189108 90 -    281578 gtaaccttgaatctaactttggtctctatgaatatgaccactccagacatctcatctaggtggaacca------tgtaagatttatccttttgtgt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71051795 90 + 121039945 gtaaccttgaatctaactttggtctctatgaatatgaccactccagatacctcatctagatggaacca------tgtaagatttatcctttcgtgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164361527 90 - 169600520 gtaaccttgaatctgactttggtctctgtgaatatgaccactccagacacctcatctagatggaacca------tataagatttatccttttgggt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165682088 90 - 171882078 gtaaccttgaatctgactttggtctctgtgaatatgaccactccagacacctcatctagatggaacca------tataagatttatccttttgggt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       535814 90 +   2379783 gtaaccttgaatctgactttggtctctgtgaatatgaccactccagacacctcatctagatggaacca------tataagatttatccttttgggt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       493361 90 +   4116138 gtaaccttgaatctgactttggtctctgtgaatatgaccactccagacacctcatctagacggaacca------tataagatttatccttttgggt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53924150 90 +  58131712 gtaacctcgaatctgcctttggtgtctgtgaatatgaccactccagacacctcatctagatggaacca------tataaggtttatccttttgtgc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       545792 90 -   3636681 gtaaccttgaatctgactttggtctctgtgaatatgaccactgcagacacctcatctagacggaacca------tataagatttatccttttgggt
i manLeu1.NW_012102332v1    C 0 C 0
s proCoq1.NW_012148396v1     13543978 90 +  16154928 gtaaccttgagtctacttttggtctccatgaatttgactactccaggtacctcatctaaatggaacca------tgtaatatttatccttttgtgt
i proCoq1.NW_012148396v1    C 0 N 0
s otoGar3.GL873689             498218 88 +   3845361 acgaccttgaatc----tttggtctctgtgaattcg----ctccaagtacctcatgtaaatggaaccaaatattaataatatctgtcctttagtgc
i otoGar3.GL873689          C 0 I 14
s canFam3.chr3               60070845 86 -  91889043 gcaacctccagtctgcttcctgtgtccatcaatttgatgacactgggtgccatgtataggtggaacca----------aaatttaccttttactgt
i canFam3.chr3              C 0 I 14
e saiBol1.JH378292             388522  0 -   2682657 I
e calJac3.chr6              154558538  0 - 158406734 I

a score=453739.000000
s hg38.chr15_KI270851v1_alt    224599 81 +    263054 ttagcataatgtcttcaagcttcatc-cgta-ttgtagcatgtgtcagaacgtcatcctttttaatggctgaataatattcca
s panTro5.chr15               9617788 81 +  83230942 ttagcgtaatgtcttcaagcttcatc-cgta-ttgtagcatgtgtcagaacgtcatcctttttaatggctgaataatattcca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74143782 81 -  99763055 ttagcataatgtctttaagcttcatc-cgta-ttgtagcatgtgtcagaacgtcatcctttttaatggctgaataatatccca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       189198 82 -    281578 ttagcgtaatgtctttaagcttcatc-catatttgtagcatgtgtcagaacgtcatcctttttaatggctgaataatattcca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71051885 81 + 121039945 ttagcataatgtcttcaagcttcatc-tgta-ttgtagcatgtgtcagaacgtcatcctttttaatggctgaataatattcca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164361617 81 - 169600520 ttagcctaatgtcttcaagcttcatc-catg-ttgtagcatgtgtcagaacgttctcctttttagtggctgaataatattcca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165682178 81 - 171882078 ttagcctaatgtcttcaagcttcatc-cata-ttgtagcatgtgtcagaacgttctcctttttagtggctgaataatattcca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       535904 81 +   2379783 ttagcctaatgtcttcaagcttcatc-cata-ttgtagcatgtatcagaacgttctcctttttagtggctgaataatattcca
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       493451 81 +   4116138 ttagcctaatgtcttcaagcttcatc-cata-ttgtagcatgtgtcagaacgttctcctttttagtggctgaataatattcca
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53924240 81 +  58131712 tcagcctgatgtcttcaagcttcacc-cata-ttgtagcatgtgtcaggacgctctcctttttagtggctgaataagattcca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       545882 81 -   3636681 ttagcctaatgtcttcaagcttcatc-cata-ttgtagcatgtgtcagaacgttctcctttttagtggctgaataatattcca
i manLeu1.NW_012102332v1    C 0 C 0
s otoGar3.GL873689             498320 80 +   3845361 ttagcataatgtcctgaaggttcatc--atg-ttatagaatgtttcagaacaccattccctttaatggcatagtaaccttcca
i otoGar3.GL873689          I 14 C 0
s canFam3.chr3               60070945 77 -  91889043 ttaggattatgtctccagggcttatcccatg-ttgtagcatgtgtcagaatttcatttcttt--atggct---taatatttca
i canFam3.chr3              I 14 N 0
e saiBol1.JH378292             388522  0 -   2682657 I
e calJac3.chr6              154558538  0 - 158406734 I

a score=111573.000000
s hg38.chr15_KI270851v1_alt    224680 21 +    263054 ctgtatgcatatatcactttt
s panTro5.chr15               9617869 21 +  83230942 ctgtatgcatatatcactttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74143863 21 -  99763055 ctgtatgcatatatcactttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       189280 21 -    281578 ctgtatgcatatatcactttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71051966 21 + 121039945 ctgtatgcatatatcactttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164361698 21 - 169600520 ctgtatgcatatatcactttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165682259 21 - 171882078 ctgtatgcatatatcactttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       535985 21 +   2379783 ctgtatgcatatatcactttt
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       493532 21 +   4116138 ctgtatgcatatatcactttt
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53924321 21 +  58131712 ctctatgcatatatcactttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       545963 21 -   3636681 ctgtatgcatatatcactttt
i manLeu1.NW_012102332v1    C 0 C 0
s otoGar3.GL873689             498400 21 +   3845361 ttgtctgtacgtactgtgttt
i otoGar3.GL873689          C 0 N 0
e saiBol1.JH378292             388522  0 -   2682657 I
e calJac3.chr6              154558538  0 - 158406734 I

a score=427181.000000
s hg38.chr15_KI270851v1_alt    224701 92 +    263054 cttctttgtgagatagagtctcactctgttgcccaggctggagtgcagtggcgcaatcttggctcactgcaacctccgcctcctgggttcaa
s panTro5.chr15               9617890 92 +  83230942 cttctttgtgagacagagtctcactctgtcgcccaggctggagtgcagtggcgcaatcttggctcactgcaacctccgcctcctgggttcaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74143884 92 -  99763055 tttctttgtgagacagagtctcagtctgtcgcccaggctggactgcagtggcacgatcttggctcagtgcaacctccgcctcctaggctcaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       189301 92 -    281578 tttctttgtgagacagagtctcagtctgtcgcccaggctggactgcagtggcacgatcttggctcagtgcaacctccgcctcctaggttcaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71051987 92 + 121039945 tttctttgtgagacagagtctcactctgtcacccaggctggagtgcagtagcgcgatcttggctcactgcaacttccgcctcctgggttcaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164361719 92 - 169600520 tttctttgtgagacagagtctcactctgtcgcccaggctggagtgcagtggcgtgatcctggctcactgtaaccgccacctcccgggttcaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165682280 92 - 171882078 tttctttgtgagacagagtctcactctgtcgcccaggctggagtgcagtggcgtgatcctggctcactgtaaccgccacctcccgggttcaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       536006 92 +   2379783 tttctttgtgagacaaagtctcactctgtcgcccaggctggagtgcagtggcgtgatcctggctcactgtaaccgccacctcccgggttcaa
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       493553 92 +   4116138 tttctttgtgagacagagtctcactctgtcacccaggctggagtgcagtggcgtgatcctggctcactgtaaccgccacctcccgggttcaa
i cerAty1.NW_012001462v1    C 0 I 1058
s chlSab2.chr26              53924342 92 +  58131712 tttctttgtgaggcagagtctcactctgtcgcccaggctggagtgcagtggcgcgatcctggctcactgtaaccgccacctcccgggttcaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       545984 92 -   3636681 tttctttgtgagacagagtctcactctgtcacccaggctggagtgcagtggcgtgatcctggctcactgtaaccaccacctcccgggttcaa
i manLeu1.NW_012102332v1    C 0 C 0
e saiBol1.JH378292             388522  0 -   2682657 I
e calJac3.chr6              154558538  0 - 158406734 I

a score=2556909.000000
s hg38.chr15_KI270851v1_alt    224793 702 +    263054 gcagttctcctgtctcagcctgctgagcagctgggattacaggccggtgccaccatgctcagctaacttttcta-cttttTTTTTTTAATTATTA-TTTTTTTGAGACAGAGTCTCACTCTGTCTATAAGGAGTGTATGtgttatatac-----------------atttttagttttagtagttactgaagatattaattataacatctatttttgactgatttaaatctattattatttagtaaagtctcctcctaaacaatgcaaagaccttagttctctttaacatcatttatcttcattctgatttatatgttcttaacatattttaatt--------------------tttaattttttttttttttgagacggagtctcactctgtcgccccggctggagtgcagtggcgcgatcctggctcactgcaactgacacctcccgggctcaagcgattctcctgcatcagcctcctgagtagctgggattataggctcctgccaccacgcctggctaatttttgtatttttagtggaggtgagatttcaccatgctggccaggctgctcttgaactcctgacctcaggcgatccacccacc----tcagtctcccaaagtgctggggttatgtgcatgagccaccacgtccagccaaaattttatacattttatacAAATATATATCTAACAGAACTATCGAAGACATTCTTTTATGCACATAGAAAATGTTCATAAAAT
s panTro5.chr15               9617982 716 +  83230942 gcagttctcctgtctcagcctgctgagcagctgggattacaggccagtgccaccatgctcagctaacttttcta-c--ttttTTTTTAATTATTA-TTTTTTTGAGACAGAGTCTCACTCTGTCCATAGGGAGTGTATATGTTATACACtttagtttttagttttagtttttagttttagtagttactgaagatattaattataacatctatttttgactcatttaaatctattattatttagtaaagtctcctcctaaacaatgcaaagaccttagttctctttaacatcatttatcttcATTCTGATTTATATGTTCTTAACATATTTTAAtt--------------------tttaa-tttttttttttttgagatggagtctcactctgtcgccccggctgtagtgcagtggcgcgatcctggctcactgcaactgacacctcccgggctcaagcgattctcctgcatcagcctcctgagtagctgggattacaggctcctgccaccacgcctggctaatttttgtattttcagtagaggtgagatttcaccatgctggccaggctgctcttgaactcctgacctcaggcgatccacccact----tcagtatcccaaagtgctggggttatgtgcatgagccaccacgtccagccAAAATTTTATACGATTTATACAAATACATATCTAACAGAACTATCGAAGACATTCTTTTATGCACATAGAAAATGTTCATAAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74143976 688 -  99763055 gcaattctcctgtctcagcctcctgagtagctgggattacaggcctgagccaccacgctcagctaacttttcta-t--ttGTTTTTTAATTATTA-TTTTTTTGAGACAGAGTCTCACTCTGTCTATAAGGAGTGCATAtgttatatac-----------------atttttagttttagtagttactgaagatattaattataacatctatttttgactcatttaaatctgtta----ttagtatattctccacctaaacaatgcaaaaaccttagttctctttaagatcatttatcttcATTCTGATTTATATGTTCTTAACATA----------------------------TTTAAtttttttttttttgtagacggagtctcactctgttgcccaggctggagtgcaatggcgcgatcctggctcactgtaactgacacctcccgggctcaagcgattctcctgcatcagcctcccgagtagctgggattacaggctcccaccaccatgcctggctaatttttgtatttttagtagaggtgagatttcaccatgttggccaggctgctcttgaactcctgacctcaggtgatccacccacc----tcagtctcccaaagtgctggggttacatgcatgagccactgcatccagccAAAATTTTATACATTTTATATAAATACATATCTAACAGAACTATAGAAGACATTCTTTTATGCACACAGAAAATGTTCATAAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       189393 691 -    281578 gcaattctcctgtcttagcctcctgagtagctgggattacaggcctgagccaccacgctcagctaacttttcta-t--ttGTTTTTTAATTATTA-TTTTTTTGAGACAGAGTCTCACTCTGAATATAAGGAGTGCATATGTTATATAC-----------------ATTTTTAGTTTTAGTAGTTACTGAAGATATTAATTATAACATCTATTTTTAACTCATTTAAATCTATTA----TTAGTATATTCTCCACCTAAACAATGCAAAAACCTTAGTTCTCTTTAAGATCATTTATCTTCATTCTGATTTATATGTTCTTAACATATTTTAAtt--------------------tt----tttttttttttttgagacggagtctcactctgttgcccaggctggagtgcagtggcgcgatcctggctcactgtaactgacacctccc-ggctcaagcaattctcctgcatcagcctcccgagtagctgggattacaggctcccaccaccatgcctggctaatttttgtatttttagtagaggtgagatttcaccatgttggccaggctgctcttgaactcctgacctcaggtgatccacccacc----tcagtctcccaaagtgctggggttacatgcatgagccactgcatccagccAAAATTTTATACATTTTATATAAATACATATCTAACAGAACTATAGAAGACATTCTTTTATGCACACAGAAAATGTTCATAAAAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71052079 720 + 121039945 gcaattctcctgtctcatcctcctgagtagctgggattacaggcctttgccaccatgctcagctaacttttcta----tttttTTTTAATTATTATTTTTTTTGAGACAGAGTCTCACTCTGTCTATAAGGAATGTATAtgttatatac-----------------atttttagttttagtagttactgaagatattaattataacatctatttttgactcatttaaatctattattatttaatatattctcctcctaaacaatacaaagaccttagttctctttaacatcatttatcttcattctgatttatatgttcttaacatattttaattATTATTATTATTATTAtttatttatttatttatttttttgagatggagtctcactctgtcacccaggctggagtgcggtggcgtgatcctggctcactgctaccaacaccttccgggctcaagcgattcttctgcatcagcctcccgagtagctgggattacaggctcctgccaccacacctggctaatttttgtatttttagtagaggtaagatttcaccatgttggcgaggctgctcctgaactcctgacctcaggtgatccacccacc----tcagtctcccaaagtgctggggttatgtgcatgagccactgtgtccagccAAAATTTTATACATTTTATACAAATACATATCTAACAGaactatagaagacattcttttatgcacacagaaaatgttcataaaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164361811 702 - 169600520 gcaattctcctgtctcagcctcctaagtagctgggattacaggcctgtgccaccaagctcagctaacttttgta----tttttTTTTAATTATTA-TGTTTTTGAGACAGAGTCTCACTCTGTCTATAAGGAGTGTATAtgttatatac-----------------atttttagttttagtagttactcaagatacaaattataacatctatttttgactcatttaaatctattattatttagtatattctcctcctaaacaatgcaaagaccttagttctctttaacatcatttatcttcattctgatttatatgttcttAACATA-TTTAACA--------------------tttttttcttcttttttttgagacggagtctcactctgttgccctggctggagtgcagtggcacgatcctggctcactgcaactgccatctccccggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggctcctgccaccatgcctggctaatttttatatttttagtagaggtgagatttcaccgtgttggcccggctggtcttgaactcctgacctcatgtgatccgcccacccactttggcctcccaaagtgctggggttatgtgcatgagccaccgcatccagTTAAAATTTTACACATTTTATACAAATACACATCTAACAGAACTATGGAAGACATTCTTTTAGGCGCACAGAAAATGTTCATAAAAT
i rheMac8.chr7              C 0 I 290
s macFas5.chr7              165682372 702 - 171882078 gcaattctcctgtctcagcctcctaagtagctgggattacaggcctgtgccaccaagctcagctaacttttgta----tttttTTTTAATTATTA-TGTTTTTGAGACAGAGTCTCACTCTGTCTATAAGGAGTGTATAtgttatatac-----------------atttttagttttagtagttactcaagatacaaattataacatctatttttgactcatttaaatctattattatttagtatattctcctcctaaacaatgcagagaccttagttctctttaacatcatttatcttcattctgatttatatgttcttAACATA-TTTAACA--------------------tttttttcttcttttttttgagacggagtctcactctgttgcccaggctggagtgcagtggcacgatcctggctcactgcaactgccatctccccggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggctcctgccaccatgcctggctaatttttatatttttagtagaggtgagatttcaccgtgttggcccggctggtcttgaactcctgacctcatgtgatccacccacccactttggcctcccaaagtgctggggttatgtgcatgagccaccgcatccagTTAAAATTTTACACATTTTATACAAATACACATCTAACAGAACTATGGAAGACATTCTTTTAGGCGCACAGAAAATGTTCATAAAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       536098 704 +   2379783 gcaattctcctgtctcagcctcctaagtagctgggattacaggcctgtgccaccaagctcagctaacttttgtatt--tttTTTTTTAATTATTA-TGTTTTTGAGACAGAGTCTCACTCTGTCTATAAGGAGTGTATAtgttatatac-----------------atttttagttttagtagttactcaagatacaaattataacatctatttttgactcatttaaatctattattatttagtatattctcctcctaaacaatgcaaagaccttagttctctttaacatcatttatcttcattctgatttatatgttcttAACATA-TTTAACA--------------------tttttttcttcttttttttgagacggagtctcactctgttgcccaggctggagtgcagtggcacgatcctggctcactgcaactgccatctccctggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggctcctgccaccatgcctggctaatttttatatttttagtagaggtgagatttcaccgtgttggcccggctggtcttgaactcctgacctcatgtgatccacccacccactttggtctcccaaagtgctggggttatgtgcatgagccaccgcatccagTTAAAATTTTACACATTTTATACAAATACACGTCTAACAGAACTATGGAAGACATTCTTTTAGGCGCACAGAAAATGTTCATAAAAT
i macNem1.NW_012011934v1    C 0 I 290
s chlSab2.chr26              53924434 703 +  58131712 gcgattctcctgtctcagcctcctgtgtagctgggattacaggcctgtgcaaccaagctcagctaccttttgta-t--ttttTTTTTAATTATTA-TGTTTTTGAGACAGAGTCTCACTCTGTCTATAAGGAGTATATAtgttatatac-----------------atttttagttttagtagttgctcaagatacaaattataacatctatttttgactcatttaaatctattattatttagtatattctcctcctaaacaatgcaaagaccttagttctctttaacatcatttatcttcatactgatttatatgttcttAACATA-TTTAACA--------------------ttttttttttcttttttttgagacggagtctcactctgttgcccaggctggagtgcagtggcacgatcctggctcactgcaaccgccatctcccaggttcaagcgattctgctgcctcagcctcccaagtagctgggactacaggctcctgccaccatgcctggctaatttttatatttttagtagaggtgagatttcaccgtgttggcccggctggtcttgaactactgacctcatgtgatccgcccacccactttggcctcccaaagtgctggggttatgtgcatgagccaccgcatccagTTAAAATTTTACACATTTTATACAAATACACATCTAACAGAACTATGGAAGACATTGTTTTAGGCGCACAGAAAATGTTCATAAAAT
i chlSab2.chr26             C 0 I 290
s manLeu1.NW_012102332v1       546076 702 -   3636681 gcgattctcctgtctcagcctcctaagtagctgggattacaggcctgtgccaccaagctcagctaagttttgta----tttttTTTAAATTATTA-TGTTTTTGAGACAGAGTCTCACTCTGTCTATAAGGAGTGTATAtgttatatac-----------------atttttagttttagtagttactcaagatacaaattataacatctatttttgactcatttaaatctattattatttagtatattctcctcctaaacaatgcagagaccttagttctctttaacatcatttatcttcattctgatttatatgttcttAACATA-TTTAACA--------------------tttttttcttcttttttttgagatggagtctcactctgttgcccaggctggagtgcagtggcatgatcctggctcgctgcaactgccatctccccggttcaagcgattctcttgcctcagcctcccaagtagctgggactacaggctcctgccaccatgcctggctaatttttatatttttagtagaggtgagatttcaccgtgttggcccggctggtcttgaactcctgacctcatgtgatccgcccacccactttggcctcccaaagtgctggggttacgtgcatgagccaccacatccagTTAAAATTTTACACATTTGATACAAATACACATCTAACAGAACTATGGAAGACATTCTTTTAGGCGCACAGAAAATGTTCATAAAAT
i manLeu1.NW_012102332v1    C 0 I 289
e cerAty1.NW_012001462v1       493645 1058 +   4116138 I
e saiBol1.JH378292             388522   0 -   2682657 I
e calJac3.chr6              154558538   0 - 158406734 I

a score=226250.000000
s hg38.chr15_KI270851v1_alt    225495 256 +    263054 CCAGTCATATGCTAAGTGGGTCATATGCTCAAACAAAA-TTTCAAAAAAAGTCAAAGGATCAGCCAGGCGCAGTGACTCATGCCtgtttttgtttttgt-----------ttttgtttttgttttttgagacagagtctcgctctgtcacccaggctggagtgcagtggcgcgtgatctcagctcactgcaagctccgcctcctgggttctcgccattcctcccgcctcagcctcccgagtagctgggactacagacgcatgccacca
s panTro5.chr15               9618698 250 +  83230942 CCAGTCATATGCTAAGTGGGTCATATGCTCAAACAAAA-TTTCAAAAAATGTCAAAGGATCGGCCAGGCGCAGTGACTCACGCC------tgtttttgt-----------ttttgtttttgttttttgagatggagtctcgctctgtcacccaggctggagtgcagtggcacgtgatctcagctcactgcaagctctccctcctgggttcacgccattcctcccgcctcagcctcccgagtagctgggactacagacgcatgccacca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74144664 250 -  99763055 CCAGTCATATGCTAAGTGGGTCATATGCTCAAACAAAAGTTCCAAAAAATGTCAAAGGATCGGCCAGGCGCAGTGACTCATGCC------TGttttttg-----------ttttgttttgtttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgcgtgatcttggctcactgcaagctccgcttcccgggttcatgccatt-ctcccgcttcagcctcccgagtagctgcgactacaggcgcctgccacca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       190084 261 -    281578 CCAGTCATATGCTAAGTGGGTCATATGCTCAAACACAAGTTCCAAAAAATGTCAAAGGATTGGCCAGGCGCAGTGACTCATGCC------TGTTTttttgttttgttttgttttgttttgtttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgcgtgatctcggctcactgcaagctctgcttcccgggttcatgccatt-ctcccgcttcagcctcccaaatagctgcgactacaggcgcctgccacca
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71052799 254 + 121039945 ctggtcatatgctaagtgggtcatatgctcaaatacaagtttcaagaaatgtcaaaggatcgGCCAGGTGCAGTGGCTCATGCC------TGTTGtttt---ttgttt--tttttttttttttttgtgagacggagtctcgctctgtcgcccaggctggagtgcaatggcgc--agtctcggctcactgcaaactccgccacccgggttcatgccatt-ctcctgcctcagcctcccgagtagctaggattacaggtgcccgccacca
i nomLeu3.chr6              C 0 I 115
s macFas5.chr7              165683074 151 - 171882078 --------------------------------------------------GTcaaaggatcggctgggcgcagtggctcacgtc----------------------------------------------------------------acccaagctggtgtgcagtgctgc--aatctcggctcactgcaagctccacctcccgggttcacgccatt-ctcctgcctcagcctcccgagtagctgggactacaggtacccgccacca
i macFas5.chr7              C 0 C 0
e manLeu1.NW_012102332v1       546778 289 -   3636681 I
e cerAty1.NW_012001462v1       493645 1058 +   4116138 I
e macNem1.NW_012011934v1       536802 290 +   2379783 I
e rheMac8.chr7              164362513 290 - 169600520 I
e chlSab2.chr26              53925137 290 +  58131712 I
e saiBol1.JH378292             388522   0 -   2682657 I
e calJac3.chr6              154558538   0 - 158406734 I

a score=69128.000000
s hg38.chr15_KI270851v1_alt    225751 86 +    263054 tgccaagctaatttttcgtatttttaatagagatggggcttcaccgtgttagccaagatggtctcgatctcctgacctcatgatcc
s panTro5.chr15               9618948 86 +  83230942 tgccaggctaatttttcgtatttttaatagagatggggcttcaccatgttagccaagatggtctcgatctcctgacctTgtgatcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              74144914 84 -  99763055 cgcccggctaattttt--gatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatcc
i panPan2.chr15             C 0 N 0
s gorGor5.CYUI01000141v1       190345 86 -    281578 cgcccggctaattttttgtatttttagtagaggtggggtttcaccgtgttagccaggatggtctcgatctcctgacctTgtgatcc
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              165683225 86 - 171882078 cgcccggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcccgacctcatgaccc
i macFas5.chr7              C 0 C 0
e nomLeu3.chr6               71053053 115 + 121039945 I
e manLeu1.NW_012102332v1       546778 289 -   3636681 I
e cerAty1.NW_012001462v1       493645 1058 +   4116138 I
e macNem1.NW_012011934v1       536802 290 +   2379783 I
e rheMac8.chr7              164362513 290 - 169600520 I
e chlSab2.chr26              53925137 290 +  58131712 I
e saiBol1.JH378292             388522  0 -   2682657 I
e calJac3.chr6              154558538  0 - 158406734 I

a score=25169.000000
s hg38.chr15_KI270851v1_alt    225837 52 +    263054 atgcctgtaatcccagcactttgggaggccgaggcgggtgaatcaggagttc
s panTro5.chr15               9619034 52 +  83230942 atgcctgtaatcccagcactttgggaggccgaggcgggtggatcaggagttc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       190431 52 -    281578 acacctgtaatcccagcattttgggaggccgaggcaggtggatcacgaggtc
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              165683311 52 - 171882078 actcctgtaatcccagcactttgggaggccgaggcaggcggatcatgaggtc
i macFas5.chr7              C 0 I 2
e nomLeu3.chr6               71053053 115 + 121039945 I
e manLeu1.NW_012102332v1       546778 289 -   3636681 I
e cerAty1.NW_012001462v1       493645 1058 +   4116138 I
e macNem1.NW_012011934v1       536802 290 +   2379783 I
e rheMac8.chr7              164362513 290 - 169600520 I
e chlSab2.chr26              53925137 290 +  58131712 I
e saiBol1.JH378292             388522  0 -   2682657 I
e calJac3.chr6              154558538  0 - 158406734 I

a score=29789.000000
s hg38.chr15_KI270851v1_alt    225889 123 +    263054 aggagatcgagaccatcctggctaacgcggtgaaaccctgtctctactaaaagtacaaaaaattagcc-ggtgtgttggcgggcacctgtagtcccaactacttgggaggctgaggcgggagaa
s panTro5.chr15               9619086 123 +  83230942 aggagatcgagaccatcctggctaacacggtgaaaccctgtctctactaaaagtacaaaaaattagcc-agtgtggtggcgggcgcctgtagtcccaactacttgggaggctgaggcgggagaa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       190483 123 -    281578 aggagatcgagaccatcctggctaacatggtgaaacctcgtctgtactaaaaatac-aaaaattagccgggcgtggtggcgggcgcctatagtcccagctactcgggaggctgaggcgggagaa
i gorGor5.CYUI01000141v1    C 0 C 0
e nomLeu3.chr6               71053053 115 + 121039945 I
e manLeu1.NW_012102332v1       546778 289 -   3636681 I
e cerAty1.NW_012001462v1       493645 1058 +   4116138 I
e macNem1.NW_012011934v1       536802 290 +   2379783 I
e rheMac8.chr7              164362513 290 - 169600520 I
e chlSab2.chr26              53925137 290 +  58131712 I
e saiBol1.JH378292             388522   0 -   2682657 I
e calJac3.chr6              154558538   0 - 158406734 I
e macFas5.chr7              165683363   2 - 171882078 I

a score=2548.000000
s hg38.chr15_KI270851v1_alt    226012 1 +    263054 t
s panTro5.chr15               9619209 1 +  83230942 t
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       190606 1 -    281578 t
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164362803 1 - 169600520 t
i rheMac8.chr7              I 290 C 0
s macNem1.NW_012011934v1       537092 1 +   2379783 t
i macNem1.NW_012011934v1    I 290 C 0
s cerAty1.NW_012001462v1       494703 1 +   4116138 t
i cerAty1.NW_012001462v1    I 1058 C 0
s chlSab2.chr26              53925427 1 +  58131712 t
i chlSab2.chr26             I 290 C 0
s manLeu1.NW_012102332v1       547067 1 -   3636681 t
i manLeu1.NW_012102332v1    I 289 C 0
e nomLeu3.chr6               71053053 115 + 121039945 I
e saiBol1.JH378292             388522 0 -   2682657 I
e calJac3.chr6              154558538 0 - 158406734 I
e macFas5.chr7              165683363 2 - 171882078 I

a score=150024.000000
s hg38.chr15_KI270851v1_alt    226013 50 +    263054 ggcgtgaacccaggaggcggagcttgcagtgagccgagatcgtgccactg
s panTro5.chr15               9619210 50 +  83230942 ggcgtgaacccaggaggcggagcttgcagtgagccgagatcatgccactg
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       190607 50 -    281578 ggcgtgaacccaggatgtggagcttgcagtgagccgagatcgtgccactg
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7              164362804 50 - 169600520 ggcgttaacccgggaggcggagcttgcagtaagccgagatcacaacactg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165683365 50 - 171882078 ggcgttaacccgggaggcggagcttgcagtgagccgagatcgcaacacta
i macFas5.chr7              I 2 C 0
s macNem1.NW_012011934v1       537093 50 +   2379783 ggcgttaacccgggaggcggagcttgtagtgagccgagatcgcaacactg
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       494704 50 +   4116138 ggcgttaacccgggaggcggagcttgcagtgagccgagatcgcaacactg
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53925428 50 +  58131712 ggcgttaacccaggaggcggagcttgcagtgagccgagattgcaacacta
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       547068 50 -   3636681 ggcgttaacccgggaggcggagcttgcagtgagccgagatcgcaacactg
i manLeu1.NW_012102332v1    C 0 C 0
e nomLeu3.chr6               71053053 115 + 121039945 I
e saiBol1.JH378292             388522  0 -   2682657 I
e calJac3.chr6              154558538  0 - 158406734 I

a score=3751007.000000
s hg38.chr15_KI270851v1_alt    226063 1000 +    263054 cactccagcctgggcgacagaacaagactacgtctc--aaaaaacaaaaaaagcaaaa--aaaCAAGTCAAAGGATCAAACAATACATGCAGGGCATATGACGA-ttttatgtagtcaatattgatttagatttttctgcatactttgtaatttctctccacttttttcttcttctttaattttccatctatactgtttttctcctgcctgaaaat-ccccttaatatttttaaaaatgtgtctttgttggttacaaattatctatttttgtatgtctgaaaatgtctttatttctcctttatttttgaaaagtctttttgctaggtgttttctttcagcactttaaaaatagtattccattgcaatttggtttatattatttctcctgaagttggatggaagtctaattgtggttca-----------------ttttatttttccttcgtctgcttttcagagagtctttttgttttcatcttgcacaggttttacatgtgcatggagatgtttatctttcttggggttggtagggcttctggggcatgatatctgttgtctgttttggaaaattctgtctttcagtatttcttcacattttgcctctgctctattctcttttctatctttttg--gggggactcttctttcacttgtgttaggcctaacctctgtcctgcagatcttttaccttcttgttatgttttctaaacttttgctcctcagttcttcattccagatatttttactttctcttcagctgagttcagtgtgttctaaacttactcattaagttcttaattttaaatattggatttatcagttctagtctttctattttattttcagtag-tttttggttctctgctgaaatattatctttttgaacacagtaagcatatttattatactaaagtctgtgtcttctaactccaatatatggagcccttgtgggtctgtttctctcctatcatttctggtcatttttagtcgc-tttttttgcctcttcatgtgtcATTATGT
s panTro5.chr15               9619260 1001 +  83230942 cactccagcctgggcgacagaacaagactacatctt--aaaaaacaaaaaaagcaaaa--aaaCAAGTCAAAGGATCAAACAATACATGCAGGGCATATGACGA-ttttatgtagtcaatattcatttagatttttctgcatagtttgtaatttctctccacttttttcttcctctttaattttccatctatactgtttttctcctgcctgaaaat-ccccttaatatttttaaaaatgtgtctttgttggttacaaattatctatttttgtatgtctgaaaatgtctttatttctcctttatttttgaaaagtctttttgctaggtgttttctttcagcactttaaaaatagtattccattgcaatttggtttatattatttctcctgaagttggatggaagtctaattgtggttca-----------------ttttatttttccttcgtctgcttttcagagagtctttttgttttcatcttgcacaggttttacatgtgcatggagatgattatctttcttggggttggtagggcttctggggcatgatatctgttgtctgttttggaaaattctgtctttcagcatttcttcacatgttgcctctgctctattctcttttctatctttttg--gggggactcttctttcacttgtgttaggcctaacctctgtcctgcagatcttttaccttcttgttacgttttctaaacttttgctcctcagttcttcattccagatatttttactttctcttcagctgagttcagtgtgttctaaacttactcattaagttcttaattttaattattggatttatcagttctagtctttctattttattttcagtagttttttggttctctgctgaaatattatctttttgaacacagtaagcatagttattatattaaagtctgtgtcttctaactccaatatatggagcccttgtgggtctgtttctctcctatcatttctggtaatttttagtcgc-tttttttgcctcttcatgtgtcATTATGT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       190657  994 -    281578 tactccagcctgggtgacagagggagattctgtctc--aaaaaaaa--------aaaa--aaaaaGGTCAAAGGATCAAACAATACATGTGGGGCATGTGATGA-ttttatgtagtcaatattcgtttcgatttttctgcatactttgtaatttctctccacttttttcttcctctttaattttccatctatactgtttttctccagcctgaagataccccttaatattttttaaaatgtgtctttgtgggttacaaattatctatttttgtatgtctgaaaatgtctttatttctcctttatttttgaaaagtctttttgctaggtgttttctttcagcactttaaaaatagtattccattgcaatttggtttatattatttctcctgaagttggatggaagtctaattgtggttca-----------------ttttatttttccttcgtctgcttttcagagagtctttttgttttcatcttgcacaggttttacatgtgcatggagatgtttatctttcttggggttggtagggcttctggggcatgatatctgttgtctgttttggaaaattctgtctttcagtatttcttcacatgttgcctctgctctattctcttttctatctttttt--gggggactcttctttcatttgtgttaggcctaacctctgtcctgcagatcttttaccttcttgttatgttttctaaacttttgttcctcagttcttcattccagatatttttactttctcttcagctgagttcagtgtgttctaaacttactcattaagttcttaattttaattattggatttatcagttctagtctttctattttattttcagtag-tttttggttctctgctgaaatattatctttttgaacacagtaagcatatttattatattaaagtctgtgtcttctaactccaatatatggagcccttgtgggtctgtttctgtcctatcatttctggtaatttttagtcatattttcttgcctcttcatgtgtcattatgt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71053168  968 + 121039945 cactccatcctgggcgacagaacgagactacgtctc--agaaa-----------------------GTCAAAGGATCAAACAATACATGCAGGG--------------tatgtagtcaatattcatttagatttttctgcatactttgtaatttttctccacttttttcttcctctttaattttccatctatactgtttttctcctgcctgaaaatgccccttaatatttctaaaaatgtgtctttgttggttacaaattatctatttttgtatatctaaaaatgtctttatttctcctttatttttgaaaagtccttttgctaggtgttttctttcagcactttaaaaatagtattccattgcaatttggtttatattatttctcctgaagttggatggaaatgtaattgtggttcg-----------------ttttagttttccttcgtctgcttttcaaagagtctttttgttttcatcttgcacaggttttacatgtgcatggagatgtttatctgtcttggggttggtagggcttctggggcatggtatctgttgtctgttttggaaaattctgtctttcagtatttcttcacatgttgcctctgctctattctcttttctatctttttg--gggggactcttctttcacttgtgttcggcctaacctctgtcctgcagatcttttaccttcttgttatgttttccaaacttttgctcctcagttcttcattccagatatttttactttctcttcagctgagatcagtgtgttctaaacttactcgttaagttcttaattttaattattggatttatcagttctagtctttgtattttattttcagtag-ttttcggttctctgctgaaatattatctttttgaacacagtaagcataattattatattaaagtctgtgtcttctgactccaatatatggagcctttgtgggtctgtttctatcctatcatttctggtaatttttagtcacgttttcttgcctcttcatgtgtcattatgt
i nomLeu3.chr6              I 115 C 0
s rheMac8.chr7              164362854 1013 - 169600520 cacgccagcctgggtgacagagggagactccatctc--aaaaaaaataaaaattaaaattaaaaaaGTCAAAGGATCAAACAATACATGCAGGGCATGTGATGATttttatgtagtcaatattcatttagatttttctgcatactttgtaatttctctccacttttttcttcctctttaattttccatctatactgtttttctcctgcctgaaaataccccttaatatttttaaaaatgtgtctttgttggttacaaattatgtatttttgtatgtctgaaaatgtattt-------ccttattattgaaaagtctttttgctaggtgttttctttcagcactttaaaaatactattccactgcaatttggttaatattgtttcccctgaagttggctggtagtctaattgtgattcattaaagcgcatcaatcttttgatttttccttcgtctgcttttgagagggtctttttgttttcatcttgcacaggttttacatgtgcatggagatgtttatctttcttgaggttggtggggcttctggggcatgacatcttttgtctgtttcggaaaattctgtctttcagtatttcttcacatgttgcctctgctctattctcttttctgtctttttgcggggggactcttctttcacttgtgttaggcctaacctctgtcctgcaaatcttttacctacttgttatgttttctaaacttttgcccctcagttcttcattccagatatttttactttctcttcagctgagttcaatgtgttcttaacttactcattaagttcttaattttaattattggatttatcagttctagtc----tattttattttcagtag-tttttggttctgtgctgaaatattatctttttggacacagtaagcatagttattatattaaagtctatgtcttctaactccaatatatggagcccttgtgggtctgtttctatcctatcatttctggtaatttttagtcacgttttcttgcctctacatgtgtcattatgc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              165683415 1014 - 171882078 cacgccagcctgggtgacagagggagactccatctc-aaaaaaaaataaaaattaaaattaaaaaaGTCAAAGGATCAAACAATACATGCAGGGCATGTGATGATttttatgtagtcaatattcatttagatttttctgcatactttgtaatttctctccacttttttcttcctctttaattttccatctatactgtttttctcctgcctgaaaataccccttaatatttttaaaaatgtgtctttgttggttacaaattatgtatttttgtatgtctgaaaatgtattt-------ctttattattgaaaagtctttttgctaggtattttctttcagcactttaaaaatactattccactgcaatttggttaatattgtttcccctgaagttggctggtagtctaattgtgattcattaaagcgcatcaatcttttgatttttccttcgtctgcttttgagagggtctttttgttttcatcttgcacaggttttacatgtgcatggagatgtttatctttcttgaggttggtggggcttctggggcatgacatcttttgtctgtttcggaaaattctgtctttcagtatttcttcacatgttgcctctgctctattctcttttctgtctttttgcggggggactcttctttcacttgtgttaggcctaacctctgtcctgcaaatcttttacctacttgttatgttttctaaacttttgcccctcagttcttcattccagatatttttactttctcttcagctgagttcaatgtgttcttaacttactcattaagttcttaattttaattattggatttatcagttctagtc----tattttattttcagtag-tttttggttctgtgctgaaatattatctttttggacacagtaagcatagttattatattaaagtctgtgtcttctaactccaatatatggagcccttgtgggtctgtttctatcctatcatttctggtaatttttagtcacgttttcttgcctctacatgtgtcattatgc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011934v1       537143 1015 +   2379783 cacgccagcctgggtgacagagggatactccatctcaaaaaaaaaataaaaattaaaattaaaaaaGTCAAAGGATCAAACAATACATGCAGGGCATGTGATGATttttatgtagtcaatattcatttagatttttctgcatactttgtaatttctctccacttttttcttcctctttaattttccatctatactgtttttctcctgcctgaaaataccccttaatatttttaaaaatgttcctttgttggttacaaattatgtatttttgtatgtctgaaaatgtattt-------ctttattattgaaaagtctttttgctaggtgttttctttcagcactttaaaaatactattccactgcaatttggttaatattgtttcccctgaagttggctggtagtctaattgtgattcattaaagcgcatcaatcttttgatttttccttcgtctgcttttgagagggtctttttgttttcatcttgcacaggttttacatgtgcatggagatgtttatctttcttgaggttggtggggcttctggggcatgacatcttttgtctgtttcggaaaattctgtctttcagtatttcttcacatgttgcctctgctctattctcttttctgtctttttgcggggggactcttctttcacttgtgttaggcctaacctctgtcctgcaaatcttttacctacttgttatgttttctaaacttttgcccctcagttcttcattccagatatttttactttctcttcagctgagttcaatgtgttcttaacttactcattaagttcttaattttaattattggatttatcagttctagtc----tattttattttcagtag-tttttggttctgtgctgaaatattatctttttggacacagtaagcatagttattatattaaagtctgtgtcttctaactccaatatatggagcccttgtgggtctgtttctatcctatcatttctggtaatttttagtcacgttttcttgcctctacatgtgtcattatgc
i macNem1.NW_012011934v1    C 0 C 0
s cerAty1.NW_012001462v1       494754 1012 +   4116138 cacgccagcctgggtgacagagggagactccatctcaaaaaaaaaaaaaaaattaaaattaaaaaaGTCAAAGGATCGAACAATACGTGCAGGGCATGTGATGATttttatgtagtcaatattcatttagatttttctgcatactttgaaatttctctccacttttttcttcctctttaattttccatctgtactgtttttctcctgcctgaaaatactccttaatatttttaaaaatgtgtctttgttggttacaaattatgtatttttgtatgtctgaaaatgtattt-------ctttattattgaaaagtctttttgctaggtgttttgtttcagcactttaaaaatactattccactacaatttggttaatattgtttcccctgaagttggctggtagtctaattgtgattcattaaagcgcatcaatcttttgatttttccttcgtctgcttttgagagggtctttttgttttcatcttgcacaggttttacatgtgcatggagatgtttatcattcttgaggttggtgggacttctggggcatgacatcttttgtctgtttcggaaaattctgtgtttcagtatttcttcacatgttgcctctgctctattctcttttttgtctttttgcgggggaactcttctttcagttgtgttaggcctaacctctgtcctgcaaatcttttacctacttgttatgttttctaaacttttgcccctcagttcttcattccggatatttttactttctcttcagctgagttcaatgtgttcttaacttactcattaagttcttaattttaattattggatttatcagttctagtc----tattttattttcagtag-tttttggttctgtgctgaaa---tatctttttggacacagtaagcatagttattatattaaagtctgtgtcttctaactccaatatatggagcccttgtgggtctgtttctatcctatcatttctggtaatttttagtcacgttttcttgcctctacgtgtgtcattatgc
i cerAty1.NW_012001462v1    C 0 C 0
s chlSab2.chr26              53925478 1013 +  58131712 catgctagcctgggtgacagagggagactccatctc-aaaaaaaaataaaaattaaaattaaaaaaGTCAAAGGATCAAACAATACATGCAGGGCATGTGATGATttttatgtagtcagtattcatttagatttttctgtatactttgtaatttctctccacttttttcttcctctttaattttccatctatactgtttttctcctgcctgaaaataccccttaatatttttaaaaacgtgtctttgttggttacaaattatgtatttttgtatgtctgaaaatgtattt-------ctttattattgaaaagtctttttgctaggtgttttctttcagcactttaaaattactattccactgcaatttggttaatattgtttcccctgaagttggctggtagtctaattgtgattcattaaagcgcatcaaacttttgatttttccttcgtctgcttttgagagggtctttttgttttcatcttgcacaggttttacatgtgcatggagatgtttatctttcttgaggttggtggggcttctggggtatgacatcttttgtctgtttcggaaaattctgtctttcagtatttcttcacatgttgcctctgctccaatctcttttctgtctttttgc-gggggactcttctttcacgtgtgtcaggcctaacctctgtcctgcaaatcttttacctacttgttatgttttctcaacttttgctcctcagttcttcattccagatatttttactttctcttcagctgagttcagtgcgttcttaacttactcattaagttcttaattttaattattggatttatcagttctagtc----tattttattttcagtag-tttttggttctgtgctgaaatattatctttttggacacagtaagcatagttatgatattaaagtctgtgtcttctaactccaatatatggagcccttgtgggtctgattctatcctatcatttctggtaatttttagtcacgttttcttgcctctacatgtgtcattatgc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102332v1       547118 1014 -   3636681 cacgccagcctgggtgacagagggagactccatctc-aaaaaaaaataaaaattaaaactaaaaaaGTCAAAGGATCGAACAATACATGCAGGGCATGTGATGATttttatgtagtcaatattcatttagatttttctgcatactttgtagtttctctccacttttttcttcctctttaattttccatctatactgtttttctcctgcctgaaaataccccttaatatttttaaaaatgtgtctttgttggttacaaattatgtatttttgtatgtctgaaaatgtattt-------ctttattattgaaaagtctttttgctaggtgttttctttcagcactttaaaaatactattccactgcaatttggttaatattgtttcccctgaagttggctggtagtctaattgtgattcattaaagtgcatcaatcttttgatttttccttcgtctgcttttgagagggtctttttgttttcatcttgcacaggttttacatgtgcatggagatgtttatctttcttgaggttggtggggcttctggggcatgacatcttttgtctgtttcggaaaattctgtctttcagtatttcttcacatgttgcctctgctctattctcttttctgtctttttgcggggggactcttctttcacttgtgttaggcctaacctctgtcctgcaaatcttttacctacatgttatgttttctaaacttttgcccctcagttcttcattccagatatttttactttctcttcagctgagttcaatgtgttcttaacttactcattaagttcttaattttaattattggatttatcagttctagtc----tattttattttcagtag-tttttggttctgtgctgaaatattatctttttggacacagtaaacatagttattatattaaagtctgtgttttctaactccaatatatggagcccttgtgggtctgtttctatcctatcatttctggtaatttttagtcacgttttcttgcctctacatgtgtcattatgc
i manLeu1.NW_012102332v1    C 0 C 0
e saiBol1.JH378292             388522    0 -   2682657 I
e calJac3.chr6              154558538    0 - 158406734 I

a score=19954.000000
s hg38.chr15_KI270851v1_alt    227063 4 +    263054 ACTG
s panTro5.chr15               9620261 4 +  83230942 ACTG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       191651 4 -    281578 actg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71054136 4 + 121039945 actg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              164363867 4 - 169600520 actg
i rheMac8.chr7              C 0 N 0
s macFas5.chr7              165684429 4 - 171882078 actg
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011934v1       538158 4 +   2379783 actg
i macNem1.NW_012011934v1    C 0 N 0
s cerAty1.NW_012001462v1       495766 4 +   4116138 actg
i cerAty1.NW_012001462v1    C 0 N 0
s chlSab2.chr26              53926491 4 +  58131712 actg
i chlSab2.chr26             C 0 N 0
s manLeu1.NW_012102332v1       548132 4 -   3636681 actg
i manLeu1.NW_012102332v1    C 0 N 0
s calJac3.chr6                3826378 4 + 158406734 atta
i calJac3.chr6              T 90474 C 0
s saiBol1.JH378292            2272958 4 +   2682657 atta
i saiBol1.JH378292          T 86988 C 0

a score=443.000000
s hg38.chr15_KI270851v1_alt    227067 1 +    263054 G
s panTro5.chr15               9620265 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       191655 1 -    281578 g
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               71054140 1 + 121039945 g
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6                3826382 1 + 158406734 a
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292            2272962 1 +   2682657 a
i saiBol1.JH378292          C 0 C 0
e macFas5.chr7              165684433 1 - 171882078 I

a score=7896.000000
s hg38.chr15_KI270851v1_alt    227068 3 +    263054 ACa
s panTro5.chr15               9620266 3 +  83230942 ACa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              71414751 3 -  99763055 aca
i panPan2.chr15             N 0 C 0
s gorGor5.CYUI01000141v1       191656 3 -    281578 aca
i gorGor5.CYUI01000141v1    C 0 N 0
s nomLeu3.chr6               71054141 3 + 121039945 aca
i nomLeu3.chr6              C 0 N 0
s macFas5.chr7              165684434 3 - 171882078 aca
i macFas5.chr7              I 1 N 0
s calJac3.chr6                3826383 3 + 158406734 aca
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292            2272963 3 +   2682657 aca
i saiBol1.JH378292          C 0 C 0

a score=133702.000000
s hg38.chr15_KI270851v1_alt   227071 124 +    263054 cctaacaaataaagagaaacactatgttcatgggttagaagactgaatac------------------------tgtgaatccatccttg-cacattgacttacagaattaatgcaatccacatcaaaatcccaagcaagcggttttat
s panTro5.chr15              9620269 120 +  83230942 cctaac----aaagagaaacactatgttcatgggttagaagactgaatac------------------------tgtgaatccatccttt-cacattgacttacagagttaatgcaatccacatcaaaatcccaagcaagcggttttat
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71414754 124 -  99763055 cctaacaaataaagagaaacactatgttcatgggttagaagactgaatac------------------------tgtgaatccatccttt-cacattgacttacagaattaatgcaatccacatcaaaatcccaagcaagcggttttat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1562406 124 -   1649220 cctaacaaataaagagaaacactatgttcatgggttagaagactgaatac------------------------tgtgaatccatccttt-cacattgacttacagagttaatgcaatccacatcaaaatcccaagcaagcggttttat
i gorGor5.CYUI01015574v1    N 0 C 0
s calJac3.chr6               3826386 147 + 158406734 cctaacaaataaagacatacactatgttcacaggttagaagactaaacaccctttgcctccagattgcctccaacgtgaatccaccctttccacgctgac--acagaattaacgcaatcctcatcaaaaacccaaccaggcggttttat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292           2272966 122 +   2682657 cctaacaaatgaagacaaacact-tgttcacaggttagaagcctaaacac------------------------tgtgaatccaccctttccacgttgac--acagaattaacgcaatcctcatcaaaatcccaaccaggcggttttat
i saiBol1.JH378292          C 0 C 0

a score=1553399.000000
s hg38.chr15_KI270851v1_alt   227195 987 +    263054 aaaaactgacaagctcatttt--aagtcatatggaaatgtaaagggcctgcaacagccaaaatatatttgaaaaagaacaaagctaaaaaactgttgcaacctgagttcaggccttttataaagctgtagtaatcaagacaatgtggcattgccaccaaaatacacaaataaatcaatgaaacagtactgggagtccagaaatagatccatacatccatagacaactgatttctgacaaaggcaaaaggcaattc-agtaggaaaagcgtagtttttcaacaaatacaactgaaacaactggacaatcatgcc-------caaaaaagcctttcaatctgaacctcccactatatataaaatttaatcaactggtcatagatatacctgtctaaaac-----tataaaacttctataacagaacatagaaagacaaac-ttcataatct----tgaggcaaaggttttgtagtcacaacatcaaaagtacactctacaaaagaataaaatgaataaactaggcttcatcaaaattaaaaacttctaatctttaagattcac-----ctgtgaagagaataaaatgacaagccacactgacagaaaatactagcaaattctatattaggcaaaggacttgtaactcagaatatataaggaactctcaaac-cagtaagaaaa----caaccta--tttaaatatggg-aaaagacttgaacagacattcaccaaaaaaggtatgtgatttgtaaataagcaagatgcttgagatcattagttattagggaaatgcagattaaaaccacaacgagataccactatacatctgtcagtataactaaaattaaagactgaacgtatcaagggttgacaaaaatgtggaggatgtggacctctggaacatccactttgcaaaacagtatgtagcgatcttaagaagctagacatacacgtaccatatgatccaaccactcctctcttagaagtttacccaagagaatttcaagtggatgtccata
s panTro5.chr15              9620389 996 +  83230942 aaaaactgacaagctcatttt--aagtcatatggaaatgcaaagggcctgcaacagccaaaatatatttgaaaaagaacaaagctaaaaaactgttgcaacctgagttcaagccttttataaagctgtagtaatcaagacaatgtggcattgccaacaaaatacacgaataaatcaatgaaaca-tactgggagtccagaaatagatccatacatccatagacaactgatttctgacaaaggcaaaaggcaattc-attaggaaaagcatagtttttcaacaaatacaactgaaacaactggacaatcatgtc-------caaaaaagcctttcaatctgaacctcccactatatataaaatttaatcaactggtcatagatatacctgtctaaaactttattataaaacttctataacagaacatagaaagacaaac-tttataatct----tgaggcaaaggttttgtagacacaacatcaaaagtacactctacaaaagaataaaatgaataaactaggcttcatcaaaattaaaaacttctaatctttaagattcac-----ctgtgaagagaataaaatgacaagccacactgacagaaaatactagcaaattctatattaggcaaaggacttgtaacccagaatatataaggaactctcaaactcagtaagaaaacaatcaaccta--tttaaatatagg-aaaagacttgaacagacattcaccaaaaaaggtatctgatttgtaaataagcaaggtgcttgagatcattagttactagggaaatgcagattaaaaccacaacgagataccactatacatctgtcaatataactaaaattaaagactgaacgtatcaagggttgacaaaaatgtggaggatctggacctctggaacatccactttgcaaaacagtatgtagcgatcttaagaagctagacatacacctaccatatgatccacccactcctctcctaggagtttacccaagagaatttcaagtggatgtccata
i panTro5.chr15             C 0 I 4124
s panPan2.chr15             71414878 991 -  99763055 aaaaactgagaagctcatttt--aagtcatatggaaatgcaaagggcctgcaacagccaaaatatatttgaaaaagaacaaagctaaaaaactgttgcaacctgagttcaagccttttataaagctgtagtaatcaagacaatgtggcattgccaacaaaatacacgaataaatcaatgaaaca-tactgggagtccagaaatagatccgtacatctacagacaactgatttctgacaaaggcaaaaggcaattc-attaggaaaagcatag-ttttcaacaaatacaactgaaacaactggacaatcatgcc-------caaaaaagcctttcaatctgaacctcccaccatatataaaatttaatcaactggtcatagatacacatatctaaaac-----tataaaacttctataacagaacatagaaggagaatcttttataatct----tgaggcaaaggttttgtagacacaacatcaaaagtacactctacaaaagaataaaatgaataaactaggctccatcaaaattaaaaacttctaatctttaagattcac-----ctgtgaagagaataaaatgacaagccacactgacagaaaatactagcaaattatatattaggcaaaggacttgtaacccagaatatataaggaattctcaaactcagtaagaaaacaatcaaccta--tttaaatatagg-aaaagacttgaacggacattcaccaaaaaaggtatctgatttgtaaataagcaagatgcttgagatcattagttattagggaaatgcagattaaaaccacaacgagataccaccatacatctgtcagtataactaaaattaaagactgaacgtatcaagggttgacaaaaatgtggaggatgtggacctctggaacatccactttgcaaaacagtatgtagcgatcttaagaagctagacatacacctaccatatgatccacccactcctctcctaggagtttacccaagagaatttcaagtggatgtccata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1562530 989 -   1649220 aaaaactgacaagctcatttt--aagtcatacggaaatgcaaagggcctgcaacagccaaaatatatttgaaaaagaacaaagctaaaaaactgttgcaacctgagttcaagccttttataaagctgtagtaatcaggacaatgtggcattgccaacaaaatacacaaataaatcaatgaaaca-tactgggagtccagaaatacatccgtacatctacagacaactgatttctgacaaaggcaaaaggcaattcaaataggaaaagcatagtttttgaacaaatacaactgaaacaactggacaatcatgcc-------c--aaaagcctttcaatctgaaactcccaccatatataaaatttaatcaactgctcatagatacacgtatctaaaac-----tataaaacttctataacagaacataaaaggagaatc-tttataatct----tgaggcaaaggttttgtagacacaacatcaaaagtacactctacaaaagaataaaatgaataaactaggtttcatcaaaataaaaaacttctaatctttaagattcac-----ctgtgaagagaataaaatgacaagccacattgacagaaaatattagcaaattctatattaggcaaaggacttctaacccagaatatataaggaattctcaaactcagtaagaaaacaatcaaccca--tttaaatatagg-aaaagacttgaacggacattcaccaaaaaaggtatctgatttgtaaataagcaagatgcttgagatcattagttattagggaaatgcagattaaaaccacaatgagataccactatacatctgtcaatataactaaaattaaagactgaacgtatcaagggttgacaaaaatgtgaaggatctggacctctggaacatccactttgcaaaacagtatgtagcgatc-taagaagctagacatacacctaccatatgatccaaccactcctctcttagaagtttacccaagagaatttcaagtggatgtccata
i gorGor5.CYUI01015574v1    C 0 C 0
s macFas5.chr7               6176717 984 + 171882078 aaaaaatgacaagctcatttt--aagttatatggaaatgcaaagggactacaacagccaaaatatatttgaaaaagaacaaagtgaaagaactgttgcaacttgagtttaggtattttataaagctgtagtaatcaagacaatgtggcatcgccaccaaaatccacaaataa-------aaacagtactgagagttcagaaatagatccatacgtccatagacaactgatttctgacaaaggcaaaaggcaattc-agtaggaaaagcaaagtttttcaacaaatacaactgaaactactggacaatcaagcc-------agaaaaagcctttcaatctgaacctcccaccatacataaaatttaatcaactggtcatagatacacatatctaaaac-----tataaaacttctgtaacagaacacagaaagagaatc-tttataatcttgagtgaggcaaaggttttgtagacacaacatcaaaagtacgctctacaaaagaataaaatgaataaactaggcttcatcaaaattaaaaacttctaatctttaagattcac-----ctatgaagagaataaaatgacaagtcacattgacagaaaatattagcaacttatatatcaggcaaaggacttgtaacccagaatatacaaggaactctcaaactcagtaagaaaacaatcaaccta--cttaaatatggg-aaaagatttgaatggacattgaccaaaaaaggtatctaattcgtaaataaacaagatgcttgagatcattagttaatagggaaatacaaattaaaaccacaatgagataccaccatacatctatcagtacaacta-----aaagactgaacatatcaagggttgacaaaaatgtggaggatgtgggcctctggaacatccactttgcaaaacagtatgtagcgatcttaagaagctagacatacacctaccatatgatccaaccactcttctcctaggagtttacccaagagaatttcaagtggatgtccata
i macFas5.chr7              N 0 C 0
s calJac3.chr6               3826533 958 + 158406734 aaaaactgacaagcccatttaaaaagttatatgaaaatgcaaagggcctacaacagccaaaatatatttgaaaaagaacaaagtggaagaactgttataacctgcgttcagggctctcataaagctgtagtaatcaacg-----------------caaaatccacaagtgaatcaatgaaacaggactgcgagcccagaaatagatccacacatccacagacaacggatttctgacaaagatgaaaggcaattc-ggtaggaaaagcaaagtttctcaacaaatacaaccgaaacaactggaaaatcgtgcc------aaaaaaaagcctttcaatctgaacctcccaccaaatataaaatttactcaactgatc----atatacacgtccaaaac-----tgtaaaatttccgtaacagaacaca----gaggatc-tttataatct----ggaggaaaaggttttgttgacacaatatcaaaagtatgctctacaaaagaataaaatgaataaaccaggcttcatcaaaattgaaaacttctaatctttaaggttcacagtctctgtgaagagactaaaatgacaagccacactgacagaaaatattagcaagttatatctttagcaaaggacttgt-atccagaatatataaggaactctcaaac---------------ccaacctaattttaaatatgggcaaaagacttgaatggacattcaccaaaagaggtatctgattcacaaacaagcaagatgcttaacatcattggttattcaggaaacgcaaattaaaaccacaatgagacaccactacacatctatcagtaccactaaacctaaagactgagcatatcaagtattaac-aaaatgtggaggacccggccctctgaaacattcacttcgc--aaaagcacgtagct-tcttcagaagatagacataaacctactgtagggtccaaccactcctctcccaggattttactcaagagaatttcaggtagatgtccata
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292           2273088 998 +   2682657 aaaaactgacaagctcattttaaaagttatatgaaaatgcaaagggtctacaacagccaaaatacattcgaaaaagaacaaagtggaagaactgttacaacctgagttcagggctttcataaagctgtagtaatcaagacagtatgatattgccaccaaaatccacaaataaaccaatgaaacaggactgagagtccagaagtagatccatacatccacagacaactgatttctgacaaagatgaaaggcaattc-agtaggaagagcaaagtttctcaacaaatacaactgaaacaactggaaaattatgccaaaaaaaaaaaaaagcctttcaatctgaacctcccaccaaacataaaatttaatcgactgatcacagatatacatgtctaaaac-----tgtaaaatttctgtaacagaacata----gagaatc-tttataatct----gaaggcaacggttttgtagacacaacatcaaaagtatgctctacaaaagaataatatacataaactaggcttcatcaaaattgaaaacctctaatctttaagattcac-----ctgtgaagagactaaaatgacaagccacactgacaaaaaatattagtaaattacatcttcagcaaaggacttgt-atccagaatatataaggaactctcaaactcaggaaggaaccaaccaacctaattttaaatatgggcaaaagactcaaatggacattcaccaaaaaaggtatctgattcaaaaataagcaagatgcttaatatcattaattatttaggaaatgcaaattaagaccacaatgagacaccagtatacatctatcagtacatctaaacctaaacactgagcatatcaagtactaacaaaaacgtggtggacctggccctctggaacacccacttcgcagaagagcacgcagct-gcttcagaagctggacatacgcctaccgcagggtccaaccactcctctcctaggagtttactcaagagaatttcaagtcgatgtccata
i saiBol1.JH378292          C 0 C 0

a score=1368061.000000
s hg38.chr15_KI270851v1_alt   228182 1229 +    263054 cacaaacttgtatggaaatgtccattagcaatttcacttgcatagtcaaaaactggaaacagcccaaacattcatcaacagaaaaatggatgaacaaattgcatttgtttatcttaagatactattcaacaatttaaaag-aataaactattgatacatgcaacgtaagtgaatctcaaaattattatgctgagtggaaaaagtaagattttt--aaaaagagtatatgctgtatgattctacttatagtaagctgtaaaacatgcaaactggcctgccacagtggctcctgcccgtaatcccagcactttgggaggctgaggtgggaggatcacttgagctcaggagttcaagaccaacctgagcaacatggcaaaaccatgtctccac----caaacaaacaaaaattagccaggcatggtgacatgtgcctgtagtcccagctatttgggaggctaaggtgggaggatcacttgagcccaggaggtggaagctgcagtgagccaagatcatgccactgcactccagcctgggcaacagagtgagaccctgtctac-aaaaaa-------aagaaaac---aaacaaataaaacaccc-acaaaacaacaacaac----aaaaagcagacatgcaaactgatctctagtgacagaa------ttggtgcatacggcaggaaggagg----gaggtaaaagcaaaagggag--gggtacagagggccagagagaaacgctggggtagtgtatgagttcattatctttgattgtgctgatgctttcatggatcatacatattccaa-------agtcaatcaaaatgcatactttaaataggtgcagtttattatatgtcaattataactgaataaagctgttaaaaaaTACAAAAGAGCCCAGTACAGTGCCTGTAGCTCTCAGGCAGTTATTAGGAGTCCTGTTCACACACAAGTACAGCGCTGTGAGTTTACCTGATCATAAACACAAGAATCAGCAACATACTTTCTTCTAAAACTTTCATTCCAGCA-GCATAAATCGCATGAGCGCACACCATAATTCTTCTGTGTCTTTAGATTCATAATGTAGTTAACGCAGCACTACAACCTCTAATGTGTTGGCACAATTAAATAAA--TGTAAAGTTGCTGTAACCTACAGAAAAATCTCAG----GATACAAATCTGTGTTACCTAAATAGGAAGCACCTAAAGGGTCTCTTGCAGTCTGGAAGAGGACGGGCTCGTGGACAGAGGGCGTGGCCACATCCACAGTT
s panPan2.chr15             71415869 1243 -  99763055 cacaaacttgtatggaaatgtccattagcaatttcacttgcatagtcaaaaactggaaacagcccaaacattcatcaacagaaaaatggataaacaaattgcatctgtttatcttaagatactattcaacaatttaaaag-aataaactattgatacatgcaacgtaagtgaatcccaaa-ttattatgctgagcggaaaaagtaagattttt--aaaaagagtatatgctgtatgagtccatttatagtaagctgtaaaacatgcaaactggcctgccacagtggctcctgcctataatcccagcactttgggaggccgaggtgggaggatcacttgagctcaggggttcaagaccaacctgagcaacatggcaaaaccatgtctccac----caaacaaacaaaacttagccaggcatggtgacatgtgcctgtagtcccagctatttgggaggctaaggtgggaggatcacttgagcccaggaggtggaagctgcagtgagccaagatcatgccactgcactccagcctgggcgacagagtgagaccctgtctac-aaaaaa-------aagaaaac---aaacaaataaaacaccc-acgaaacaacaacaac----aaaaagaaaacatgcaaactgatctctagtgacagaaattaaattggtgcatatggcaggaaggaggaggggagttaaaagcaaaagggag--gggtacaaagggccagagagaaacactggagtagtgtatgagttcattatctttgattgtggtgatgctttcatggatcatacatatttcaa-------agttgatcaaaatgtatactttaaataggtgcagtttattatatgtcaattataactgaataaagctgttaaaaaaTACAAAAGAGCCCAGTACAGTGCCTGTATCTCTCAGGCAGTTATTAGGAGTCCTGTTTACACAGAAGGACAGCGCTGTGAGTTTACCTGATCATAAATACAAGAACCAGCAACATACTTTCTTCTAAAACTTTCATTCCAGCATGTATAAATCGCATGAGAGCACACCATAATTCTTCTGTGTCTTTAGAGTCATAATGCACTTAACATGGCACTACAACCTCTAATGTGTTGGCACAATTAAATAAA--TATAAGGTTGCTGTAACCTACTGGAAAATCTCAGAGAAGATGCAAATCTGTGTTACCTAAATAGGAAGCACCTAAAGGGTCTCTTGTAGTCTGGAAGAGGACGGGCTCGTGGACAGAGGGCGTGGCCACATCCACAGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1563519 1253 -   1649220 cacaaacttgtacggaaatgtccattagcaatttcacttgtatagtcaaaaactggaaacagcccaaacattcatcaacagaaaaatggataaacaaattgcatttgtttatcttaagatactattcaacaatttaaaag-aataaactattgatacatgcaacataagtgaatctcaaaattattatgctgagtggaaaaagtaagattttt--aaaaagagtatatgctgtatgagtccatttatagtaagctgtaaaacatgcaaactggcctgccacagtggctcctgcctataatcccagcactttgggaggccgaggtgggaggatcacttgagctcaggagttcaagaccaacctgagcaacatggcaaaaccatgtctccac----caaacaaacaaaaattagccaggcatggtgacatgtgcctgtagtcccagctatttgggaggctaaggtgggaggatcacttgagcccaggaggtggaagctgcagtgagccaagatcatgccactgcactccagcctgggcgacagagtgtgacccggtctacaaaaaaa-------aagaaaacaaaaaataaacaaaacacccaacaaaacaacaacaacaacaaaaaagaaaacatgcaaactgatctctagtgacagaaattaaattagtgcatatggcaggaaggaggaagggagttaaaagcaaaagggag--gggtacaaagggccagagagaaacactggagtagtgtatgagttcattatctttgattgtggtgatgctttcatggatcatacatatttcaa-------agttgatcaaaatgtatactttaaataggtgcagtttattatatgtcaattataactgaataaagctgttaaaaaaTACAAAAGAGCCCAGTACAGTGCCTGTATCTCTCAGGCAGTTATTAGGAGTCCTGTTCACACACAAGTACAGCGCTGTGAGTTTACCTGATCATAAATACAAGAATCAGCAACATACTTTCTTCTAAAACTTTCATTCCAGCTTATATAAATCGCATGAGAGCACACCATAATTCTTCTGTGTCTTTAGATTCATAGTGTAGTTAACACAGCACTACAACCTCTAATGTGTTGGCACAATTAAATAAA--TATAAGGTTGCTGTAACCTACTGGAAAATCTCAGAGAAGATGCAAATCTGTGTTACCTAAATAGGAAGCACCTAAAGGGTCTCTTGCAGTCTGGAAGAGGACGGGCTCATGGACAAAGGGCGTGGCCACATCCACAGTT
i gorGor5.CYUI01015574v1    C 0 C 0
s macFas5.chr7               6177701 1203 + 171882078 cacaaacttgtatggaaatgtccattagcaatttcacttgtacagtcaaaaactggaaatagcccaaacattcaccaacag-------------caaattgcatttgtttatcttaagatgctattcaacaatttaaaaataataaactactgatacatgcaacataagtgaatctcaaaattattatgctgagtggaaaaagtaagatttgtaaaaaaagagtacatgctgtatgattccatttatagtaagctgtaaaacatgcaaactggcctgccacagtggctcctacctataatcccagcactttgggaggccgaggtgggaggatcacttgagctcaggggttcaagaccaacctgagcaacatggcaaaaccctgtctccaccaaacaaacaaacaaaaattagcctggtatggtgacatgtgcctgtagtcccagctattcaggaggct--------------------------gaggtgggagctgcagtgagccaagatcatgccactgcactccagcctaggcgacagagtgagaccctgtctac------------------aaac---aaacaaacaaaaaccca-accaaacaacaac-------aaaaagaaaacatgtaaactgatctatagtgacagaaattaagttggtgcatatggcaggagggaggaggggagttaaaagcaaaagggagatgggtacaaagggccagagaaaaacgctagagtagtgtatgagttcattatctttgattgtggtgatgctttcatggatcacatatatttcaa-------agttgatcaaaatgtatacttaaaatagatgcagtttattatatgtcaataataactgaataaagctgttaaaaaaTACAAAAGAGCCCGCTACAGTGCCTGTATCTCTCAGGCAGTTATTAGGAGTCCTGTTTACACACAAGTACAGCGCTGTGAGTTTACCTGATCATAAATACAAGAATCAGCAACATACTTTCTTCTACAATTTTCATTCCAGCATGGATAAATCGCATGAGAGCACACCCTAATTCTTCTGTGTCTTTAGATTCATAATGCAGTTAACACAGCACTACAACCTCTAATGTGTTGGCACAATTAAATAAATCTGTAAGGTTGCTGTAATCTACAGAAAAATCTCAGAGAAGACACAAATCTGTGTTACCTAAATAGGAAGCACCTAAAGGGTCTCTCGCAGTCTGGAAGAGGACGGGCTCATGGACAGAGGGCGTGGCCACATCTACGGTT
i macFas5.chr7              C 0 C 0
s calJac3.chr6               3827491 1238 + 158406734 cacaagcttgtatggaaa-gtccattagcaatttctcttg--tagtcaaaaactggaaacagcccaaacattgataaacagacaaacggatcgacaagttgcacctgtttatcctgaggtactattcaacaactgaaaaagaaggaactactgatacatgcaacataagtgaatcccaaaattattacgctgagtggaaa----aagatttta--aaaaatagtaaatgctatatgattccatttagagtaatctgtaaaacatgcaaaCTggcctgccacagtggctcatgcctataatcccagcactttgggaggcc-aagtgggaagatcacttgagctcaagagttcaagaccaacttgaaccacatggcaaaaacctttctccaccaaacaaacaaacaaaaattagctgggcataatgacatgtgcctgttgtcccagttattagggaggctgaggagggaggatcacttgagcccaggaggtggaagcttcagtgagccaagatcatgccactgcactccagcctaggtgacagagtgagaccccatctcC-TCCCACCGCCCCCGACCAA-----AAAAAAAAAAAAACC---ACCAGACAACAACAAC----AAAAAGAAAACATGTGaactgatctatagggacagaaattaagttggtgcttacggcagggaggaggaggggagttaaaagcaa----gag--ggttacaaagggccag----aaactct---ggagtgtatgagttcagcgtctttcatggcggagaagctttcatggatcacatatatttcaattttcagaggtgatccaaatgtatactttaaataggtgcggtttattatacgtaaattataaccgaataaggttgttaaagaaTACAAAGGAGCCCAGTACAGTGCCTGTATCTCTCAGGTAGTTGTTAGGAGTCCTGTTTATACACATATACAGCACAGCCCGTTTCCCTGATCATAAATACAGGAATCAGAAACATACTTTCTTCTAAAATTTTCATCCCAGCATGCATAAATTGCATGAGAGCACACCATAATTCTTCTGTGTCTTTAGATTCATAATGCAATTAACACAGCAGTACAACCTCTAATGTGTTGGCACAAATCAACC----TATAAGGTTGCTGTGACCTACAGAAAAATCTCAGACAAGATACAAATCTGTGTTACCTAAATAGGAAGCACCTAAAGGGTCTCTTGCAGTCTGGAAGAGGACGGGCTCGTGGACAGAGGGTGTGGCCACATCCACGGTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292           2274086 1241 +   2682657 cacaagcttgtacggaaa-gtccattagcaatttctcttg--tagtcaaaaactggaaacagcccaaacattcataaacagataaatggatcaacaagttgcatctgtttatcctaaggtaccactgaacaactgaaaaagaataaactactgatacacgcaacg-aagtgaatcccaaaattattacgctgagtgaaaa----aagatttta--aaaaagagtatatgctgtatgattccatttatagtgagctgtaaaacatgcaaactggcctgctacagtgactcatgcctataataccagcactttgaaaggccaaagtgggaggatcactcgagctcaagagttcaagaccaacctgaaccatatggcaaaaccttttctccaccaaacaaacaaacaaaaattggctgggcataatgacatgtgcctgtagtcccagttattcgggaggctgaggtgggaggatcacttgagcccaggaagtgaaagcttcagtgagccaagatcatgccactgtactccagcctaggcaacagagtcagaccccatctcc-tcccac--cccccgacaaaac---aaaacaaaacaaaac---actagacaacaacaac----aaaaagaaaacatgtgaacaaacctatagggacagaaattaagttggtgcttacggcaggaaggaggaggggagttaaagccaa-agggag--ggttacaaagggccag----aaactctgtagtagtgtatgagttcagtatctttgattgtggtgaagctttcatggatcatatatattttaattttcagaggcgatcaaaatgtatacttcaaataggtgcagtttattatacgtaaattataaccgaacaaggcggttAAGGAATACAGCGGAGCCCAGTACAGTGCCTGTCTCTCTCAGGTGGTTATTAGGAGTCCTGTTTATACACACA-GCAGCACAGCCACTTTCCCCGATCATAAATACGGGAATCAGCAACATGCTTTCTTCAAAAA--TTCATTCCAGCATGCATAAATCACATGAGGGCACACCATCATTCTTCTGTGTCTTTAGATTCATAATGCAATTAACACAGCACTGCGACCTCTAATGTGTTGGCACAAATCAACC----TACGAGGTTGCTGTAACCTACAGAAAAACCTCAGACAAGATACAAATCTGTGTTACCTAAATAGGAAGCACCTAAAGGGTCTCTTGCAGTCTGGAAGAGGACGGGCTCGTGGACAGAGGGCGTGGCCACATCCACGGTT
i saiBol1.JH378292          C 0 C 0
e panTro5.chr15              9621385 4124 +  83230942 I

a score=823117.000000
s hg38.chr15_KI270851v1_alt   229411 495 +    263054 GTCCACGCCACACTGTGGGATGACCCGCAAGCCACACACATGATCTTCTGGCCTTCTAAGCCTTGCATGAGTGTGGGCTTCCTGTTAACCGTGGTCGTGCCATTGCCCTGCTGGCCGTGGTCGTTGTCACCCCAAGCATACACCTGTTTACGA-GGAGAAAAAAGCTTATAATTTTTCAACATTTCAGGACATTTTCTTT----AATGTAATTTTTACTTCAAAATGCTTAACGTGTATGCCATGGTATTTGAAAGAATTGAGTTCTTAAAAGTAAAAGCAAACCATTTCACAATCTTACAAAATGGCATCGGTGTACTATAATTCTGAAGAAAATCTAACCATGAAAATGCC----AATAACCATAAAAGGAGTATTTTCTTAATATTAATCAAATTAATTCTGCTTTGTTGCAAGTCACACAGAAGGTCCTCTCTTCAACTAAGTGCAATAA-TTTTTTCCCTTTTACTTTGCAAAGAAAAATGACCAAAAACAATATGCTCA
s panTro5.chr15              9625509 503 +  83230942 GTCCACGCCACACTGTGGGACGACCCGCAAGCCACGCGTGTGATCTTCTGGCCTTCTAAGCCTTGCACGAGCGTGGGCTTCCTGTTAACCGTGGTCGTGCCATTGCCCTGCTGGCCGTGGTCATTGTCACCCCAAGCATACACCTGTTTACGA-GGAGAAAAAAGCTTATAATTTTTCAACATTTCAGGACATTTTCTTTCTTTAATGTAATTTTTACTTCAAAATGCTTAACGTGTATGCCACGGTAGTTGAAAGAATTGAGTTCTTAAAGGTAAAAACAAACCATTTCACAATCTTACAAAATGGCATCAGTGTACTACAATTCTGAAGAAAATCTAACCATGAAAATGCTTGCTAATACCTATAAAAGGAGTATTTTCTTAATATTAATCCAATTAATTCTGCTTTGTTGCAAGACACACAGAAGGTCTTCTCTTCAACTAAGTGCAATAA-TTTTTTCCCTTTTACTTTGCAAAGAAAAATGACCAAAAACAGTATGCTCA
i panTro5.chr15             I 4124 C 0
s panPan2.chr15             71417112 498 -  99763055 GTCCACGCCACACTGTGGGACGACCCGCAAGCCACGCGTGTGATCTTCTGGCCTTCTAAGCCTTGCACGAGCGTGGGCTTCCTGTTAACCGTGGTCGTGCCATTGCCCTGCTGGCCGTGGTCATTGTCACCCCAAGCATACACCTGTTTATGA-GGGGAAAAATGCTTATAATTTTTCAACATTTCAGGACATTTTCTTT----AATGTAATTTTTACTTCAAAATGCTTAACGTGTATGCCACGGTAGTTGAAAGAATTGAGTTCTGAAAAGTAAAA-CAAACCATTTCACAATCTTACAAAATGGCATCAGTGTACTACAATTCTGAAGAAAATCTAACCATGAAAATGCTTGCCAATAACCATAAAAAGAGTATTTTCTTAATATTAATCCAATTAATTCTGTTTTGTTGAAAGACACACAGAAGGTCTTCTCTTCAACTAAGTGCAATAA-TTTTTTCCCTTTTACTTTGCAAAGAAAAATGACCAAAAATAATATGCTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1564772 497 -   1649220 GTCCACACCACACTGTGGGATGACCCACAAGCCACACACATGATCTTCTGGTCTTCTAAGCCTTGCACGAGCGTGGGCTTCCTGTTAACCGTGGTCATGCCATTGCCCTGCTGGCCACGGTCATTGTCACCCCAAGCATACACCTGTTTATGA-GGAGAAAAATGCTTATAATTTTTCAACATTTCAGGACATTTTCTTT----AATGTAATTTTTACTTCAAAATGCTTAACGTGTATGCCACGGTAGTTGAAAGAATTGAGTTCTGAAAAGTAAAAACAAACCATTTCACAATCTTACAAAATGGCATCGGTGTACTACAATTCTGAAGAAAATCTAACGATGAAAATGCTTGCCAATAACCATAAAA--AGTATTTTCTTAACATTAATCCAATTAATTCTGTTTTGTTGCAAGACACACAGAAGGTCTTCTCTTCAACTAAGTGCAATAA-TTTTTTCCCTTTTACTTTGCAAAGAAAAATGACCAAAAATAATACGCTCA
i gorGor5.CYUI01015574v1    C 0 C 0
s macFas5.chr7               6178904 497 + 171882078 GTCCACGCCACACTGTGGGACGACCCGCAAGCCACGCGCGTGATCTTCTGGCCTTCTAAGCCTTGCACGAGTGTGGGCTTCCGGTTAACCGTTGTCGTGCCATTGCCCTGCTGGCCGTGGTCATTGTCACCCCAAGCATACACCTGTTTACGAGGGGGGAAAATGCTTATAATTTTTCAACATTTCAGGACATTTTCTTT----AATGTAATTTTTACTTCAAAATGCTTAACGTGTATGCCACGGTAGTTGAAAGAATTGAGTTCTTAAAGGTGAAAACAAACCATTTCACAATCTTACGAAATGGCATCAGTGTACAACAATTCTGAAGAAAATCTAACCATGAAAACGCTTGATGATACCTATAAAAGGAGTATTTTCTTAATATTAATCC----AATTCTGCTTTGTTGCAAGACACACAGAAGGTCCTCTCTTCAACTAAGTGCAGTAATTTTTTTCCCTTTTATTTTGCAAAGAAAAATGACCAAAAACAATATGCTCA
i macFas5.chr7              C 0 C 0
s calJac3.chr6               3828729 488 + 158406734 GTCCACGCCACACTGTGGGACGACCCGCAAGCCACGCGTGTGATCTTCTGGCCTTCTAAGCCTTGCACGAGGGTGGGTTTCCTGTTAACTGTGGTTGTGCCATTGCCCTGCTGGCCGTGGTCATTGTCACCCCAAGCGTACACCTGTTTAAGA-GG--AAAAAAGCTTACAATCTTTCAACACTTCAAGATGTCTTCTTT----AA------ATTTACTTCAAAATGCTTCACGTGTATGCCACAGTAGAT-CAAGAATTGAGTTCTTAAAGGTAAAAACAAACCATTTAGCAGTCTTACAAAATGGCACCAGTCTACTATGATTCGGAAGAAAAACTAACCAGAAAAATGCCTGCCAATAACTAGGAAAGGGGTGTTTTCTTAATATCAATCCAATTAAT--TGTTTTCTTGCAAGACACACAGAAGGTCCTGTCTTCAACTAAGGGCAATGA-CTTTTCCCCTTTTATTTTGCAAAGAAAAATGACCAAAAACAATATGCTCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292           2275327 493 +   2682657 GTCCACGCCACACTGTGGGACGACCCGCAAGCCACGCGTGTGATCTTCTGGCCTTCTAAGCCTTGCACGAGGGTGGGTTTCCTGTTAACTGTGGTTGTGCCATTGCCCTGCTGGCCATGGTCATTGTCACCCCAAGCGTACACCTGTTTAAGA-GGGAAAAAAAGCTTACAATTTTTCAACACTTCAAGATGTCTTCTTT----AA------ATTTACTTCCAAATGCTTCACGTGTATGCCACAGTAGTTAAAAGAATTGAATTCTTAAAGGTAAAAACAAACCATTTTGCGATCTTACAAAATGGCACCAGTGTACTACAATCCTGAAGAAAAACTAACCAGAAAAATGCTTGCCAAGAACTATGAAAGGAGTATTTTCTTAATATTAATCCAATTAATTCTGTTTTGTTGCAAGACACACAGAGGGTCCTCTCTTCAACTAAGGGCAATAA-TTTTTCCCCTTTTATTTTGCAAAGAAAAATGACCAAAACCAATGGGCTCA
i saiBol1.JH378292          C 0 C 0

a score=582490.000000
s hg38.chr15_KI270851v1_alt   229906 272 +    263054 TTTTTCAAGTAAGTAGCTCCTTGGCCTTATAGAATTATAAAGTATAATTCATTTTGACT-AAAAAACAGTAATGGTAATTTTGTTTTCATAAATAAAATTTTAAATTGAATATCCACAAGCCGGTCATAGCATATGCTTCTCCAAGCAGAAGAGAGTGTAACACTTGTCAGGCACT-----AGCTCTGTCTCTAAAATGAGGCATGGGTGCCTCCTCACCAGTTAGCAATTTCCTAAAGCAAAGTCTTGTTAATACCTTGCAGTAGGAGCATCTTCAA
s panTro5.chr15              9626012 272 +  83230942 CTTTTCAAGTAAGTAGCTCCTTGGCCTTATAGAATTATAAAGTATAATTCATTTTGACT-AAAAAACAGTAATGGTAATTTTGTTTTCATAAATAAAATTTTAAATTGAATATCCACAAGCCGGTCATAGCATATGCTTCTCCAAGCAGAAGAGAGTGTAACACTTGTCAGGCACT-----AGCTCTGTCTCTAAAATGAGGCATGGATGCCTCCTCACCAGTTAGCAATTTCCTAAAGCAAAGTCTTGTTAATACCTTGCAGTAGGAGCATCTTCAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71417610 272 -  99763055 TTTTTCAAGTAAGTTGCTCCTTGGCCTTATAGAATTATAAAGTATAATTCATTTTGACTAAAAAAACAGTAATGGTAATTTTGTTTTCATAAATAAAATTTTAAATTGAGTATCCACAGGCCGGTCATAGCGTATGCTTCTCCAAGCAGAAGAGAGTGTAACACTTGTCAGGCACC-----AGCTCTGTCTCTAAAATGAGGCATGGATCCCTCCT-GCCAGTTAGCAATTCTCTAAAGCAAAGTCTTGCTAATACCTTGCAGTAGGAGCATCTTCAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1565269 272 -   1649220 TTTTTCAAGTAAGTTGCTCCTTGGCCTTATAGAATTATAAAGTATAATTCATTTTGACTAAAAAAACAGTAATGGTAATTTTGTTTTCATAAATAAAATTTTAAATTGAATATCCACAGGCCGGTCATAGCGTATGCTTCTCCAAGCAGAAGAGAGTGTAACACTTGTCACGCACC-----AGCTCTGTCTCTAAAATGAGGCATGGATCCCTCCT-GCCAGTTAGCAATTCTCTAAAGCAAAGTCTTGCTAATGCCTTGCAGTAGGAGCATCTTCAA
i gorGor5.CYUI01015574v1    C 0 C 0
s nomLeu3.chr6              44476989 272 - 121039945 TTTTACAAGTAAGCTGCTTCTTGGCCTTATAGAATTATAAAGTATAATTCATTTTGACT-AAAAAACAGTAATTGTAATTTTGTTTTCATAAATAAAAATTTAAATTGAATATCCACAAGCCGGTCATAGCATATGCTTCTCCAAGCAGAAGAGAGTGTAACACTTGTCAGGCACT-----AGCTCTGTCTCTGAAATGAGGCATGGATCTCTCCTCGCCAGGTAGCAATTCTCTAAAGCAAAGTCTTGCTAATACCTTGCAGTAGGAGCATCTTCAA
i nomLeu3.chr6              N 0 C 0
s macFas5.chr7               6179401 272 + 171882078 TTTTTCAAGTCAGTTGCTTCTTGGCCTTGTAGAATTATAAAGTATAATTCATTTTGACT-CAAAAACAGTAATGGTAATTTTGCTTTCATAAATAAAATTTAAAATTGAATATCCACAAGCCAGTCATAGCATATGCTCCCACAAGCAGACGAGACAGTAACACTTGTCAGGCAGT-----AGCTCTGTCTCTAAAATGAGGCATGGATCCCTCCTCGCCAGTTAGCAATTCTCTAAAGGTAAGTCTTGCTAATACCTTGCAGAACGAGCATCTTCAA
i macFas5.chr7              C 0 C 0
s calJac3.chr6               3829217 276 + 158406734 TTTTTCAAATAAGTTGCTTCTTGGCCTTATAGAATTGTAAAGTATAATTCATTTTGACTAAAAAAACAGGAATGGTCATTTTGTTTTCATAAATAAAATTTAAAATGGAATATCCATGAGCCAGTCATGGCATATGCTTCTGAAAGCAGAAGAGAGAG-AACATTTGTCAAGCATCTGTCAAGCTCTGTCTCTAAAATGAGGCACGTAACCCTCCTCACCAGTCAGCAGTTCTCTAGAGGAACGTCTTG-TAATACCTTGTAGCAGGGGCATTTTCAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378292           2275820 270 +   2682657 TTTTTCAACTAAGTTGCTTCTTGGTCGTATAGAATTGTAAAGCATAATTCATTTTGACT-AAAAAACAGTAATGGTAATTTTGTTTTCATAAATAAAATTTAAAATGGACTATCCACAAGCCAGTCACGGCACATGCTTCTCAAAGCAGAAGAGAGAG-ATCATTTGTCAGGCATC-----AGCTCTGTCTCTAAAATGAGGCACGTATCCCTCCTCGCCAGTCAGCAGTTCTCTAAAGGAAAGTCTTG-TAATTCGTTGCAGCAGGAGCATCTTCAA
i saiBol1.JH378292          C 0 C 0

a score=4011.000000
s hg38.chr15_KI270851v1_alt   230178 2 +    263054 GA
s panTro5.chr15              9626284 2 +  83230942 GA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71417882 2 -  99763055 GA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1565541 2 -   1649220 GA
i gorGor5.CYUI01015574v1    C 0 C 0
s nomLeu3.chr6              44477261 2 - 121039945 GA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               6179673 2 + 171882078 GA
i macFas5.chr7              C 0 C 0
s saiBol1.JH378292           2276090 2 +   2682657 GA
i saiBol1.JH378292          C 0 C 0
e calJac3.chr6               3829493 0 + 158406734 C

a score=54351.000000
s hg38.chr15_KI270851v1_alt   230180 62 +    263054 ATAACAATCTTTTggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccg
s panTro5.chr15              9626286 62 +  83230942 ATAACAATCTTTTggctgggtgcggtggctcacgcctgtaatcccagcactttgggaggccg
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71417884 62 -  99763055 ATAACAATCTTTTggccgggcacggtggctcactcctgtaatcccagcactttgggaggccg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1565543 62 -   1649220 ATAACAATCTTTTggccgggcacggtggctcactcctgtaatcccagcactttgggaggccg
i gorGor5.CYUI01015574v1    C 0 C 0
s nomLeu3.chr6              44477263 62 - 121039945 ATAACAATCTATTggccgggcgcggtggctcacacctgtaatcccagcaatttgggaggccg
i nomLeu3.chr6              C 0 C 0
e saiBol1.JH378292           2276092  0 +   2682657 C
e calJac3.chr6               3829493  0 + 158406734 C
e macFas5.chr7               6179675  0 + 171882078 C

a score=118617.000000
s hg38.chr15_KI270851v1_alt   230242 246 +    263054 aggcaggtggatcacgaggtcaggagatcgagaccacggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccaggaggcagaacttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactctgtctcaaaaaaaaaaaa--aaaaaaaaaaaaaG
s panPan2.chr15             71417946 242 -  99763055 aggcgggtggatcacgaggtcaggagatcgagaccacggtgaaaccccgtctctactaaaaatacaaaaaattagctgggagcgatggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcgcgccactgcactccggcctgagcgacagagcgagactctgtctcaaaaaaaataaa--taaataaaaa----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1565605 244 -   1649220 aggcgggtgggtcacgaggtcaggagatcgagaccacggtgaaaccctgtctctactaaaaatacaaaaaattagctgggagcgatggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaacggcatgaacccaggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactctgtctcaaaaaaaataaaataaaataaaaa----
i gorGor5.CYUI01015574v1    C 0 C 0
s nomLeu3.chr6              44477325 232 - 121039945 aggcaggtggatcacgaggtcaggagatcgagaccaccgtgaaagcccgtctctactaacaatataaaaaattagctgggcgtggtggcgggcacctgcagtcccagctactcgggaagctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgac--agcgagactccgtctcaaaaaaaaaaaa----------aa----
i nomLeu3.chr6              C 0 C 0
e panTro5.chr15              9626348   0 +  83230942 C
e saiBol1.JH378292           2276092   0 +   2682657 C
e calJac3.chr6               3829493   0 + 158406734 C
e macFas5.chr7               6179675   0 + 171882078 C

a score=1187.000000
s hg38.chr15_KI270851v1_alt   230488 2 +    263054 GG
s panPan2.chr15             71418188 2 -  99763055 ga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1565849 2 -   1649220 ga
i gorGor5.CYUI01015574v1    C 0 C 0
s nomLeu3.chr6              44477557 2 - 121039945 ga
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               3829493 2 + 158406734 GG
i calJac3.chr6              C 0 C 0
e panTro5.chr15              9626348 0 +  83230942 C
e saiBol1.JH378292           2276092 0 +   2682657 C
e macFas5.chr7               6179675 0 + 171882078 C

a score=1155885.000000
s hg38.chr15_KI270851v1_alt   230490 735 +    263054 ATAACAATCTTTCCACACACTTTTCACGTGGACTTCAGAGTGGGAACGCCTCTTTTCTGAGGACCCCG-CCCC-CAACCCCTGCTGCTGAGTAGGCAGATACACCAGCGGGCAAAACGGATGGGTCCCGGCCTCATGGTTCTTCAAGCAGTAAGACTCGGCTGAGTTCATCAACAGCTGTGATTTCAACAGGACGAGGGCCATGTCGTGACCCCCACGTCCCCCAAGTCAGGATGGCACGCCACCCCCAGGCCACCTGCAGCCTTACCTGCCCCGAGTCCGTGACCGCCAGGCAGTGCAGGGCCCCGACAGCCACATGCACGATCTTCTTCCCTCTCAGCCCTTCCACCACCTACAGTTTCCACACGTGCACGTCAGAGCCCTGGCGCAACCTGAAGTAATCCCCCTTTCCCCTGAGAAGGAGGCCCGTGGTGGAGTGTTACAATATAGTTGTGGTCTGACAATGCTATACAAGAAGACACTCATTGTCTCACATCTTTCACAGCCAGCTCAATGACATCACACACAGCACCCAAGGTCTTCGAACTTGTATTCAAAATCATACACCATT-AATTCAAATTAACTT-----------ATTAAGTCAGCTGGGAAAAACCTTAATACCTTAATACATGTTCTACAATATTTAAGTTACTGTTGTAGGTTTTCATAT----AGACTGAAAATAAGACACATTACTGCAAACACCTATC----CAAAGTCCTATCTGGTATACATCTTTCTCAGAGTGCC
s panPan2.chr15             71418190 732 -  99763055 aTAACAATCTTTCCACACACTTTTCACGTGGACTTCAGAGTGGGAACGCCTCTTTTCTGAGGACCCCG-CCCC-CAACCCCTGCTGCTGAGCAGGCAGATACACCAGCGGGCAAAAGGGACGGGTCCCGCCCCTATGGTTCTTCAAGCAGTAAGACTCGGCTGAGTTCATCAACAGCTGCGATTTCAACAGGACGAGGGCCGTGTCGTGAACCCCACGTCCCCCAAGTCAGGATAGCACGCCACCCCCAGGCCACCTGCAGCCTTACCTGCCCCGAGTCCGTGACCGCCAGGCAGTGCAGGGCCCCGACGGCCACATGCACGATCTTCTTCCCTCTCAGCCCTTCCACCACCTGCGGCTTCCGCACGTGCACGTCAGAGCGGTGGCCCAACCTGAAGTAATCCCCCTTTCCCCTGAGA-GGAGGCCCGTAGTGGAGTGTTACAATATAGTTGTGGTCTGACAATGCTATACAAGAAGACACTCATTGTC--ACATCTTTCACAGCCAGCTCAATGACATCACACACAGCACCCAAGGTCTTCGAACTTGTATTCAAAATCATACACCATT-AATTCAAATTAACTT-----------ATTAAGTCAGCTGGGAAAAACCTTAATATCTTAATACATGTTCTACAATATTTAAGTTACTGTTGTAGGTTTTCATAT----AGACTGAAAATAAGACACACTACTGCAAACACCTATC----CAAAGTCCTATCTGGTATACATCTTTCTCAAAGTGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1565851 734 -   1649220 aTAACAATCTTTCCACACACTTTTCACGTGGACTTCAGAGTGGTAACGCCTCTTTTCTGAGGACCCCG-CCCC-CAATCCCTGCTGCTAAGCAGGCAGATACACCAGCGGGCAAAAGGGACGGGTCCCGCCCCCATGGTTCTTCAAGCAGTAAGACTCGGCTGATTTCATCAACAGCTGCGATTTCAACAGGACGAGGGCCGTGTCGTGACCCCCAAGTCCCCCAAGTCAGGATGGCACGTCACCCCCAGGCCACCTACAGCCTTACCTGCCCCGAGTCCGTGACCGCCAGGCAGTGCTGGGCCCCGACGGCCACATGCACGATCTTCTTCCCTCTCAGCCCTTCCACCACCTGCGGCTTCCGCACGTGCACGTCAGAGCGGTGGCCCAACCTGAAGTAATCCCCCTTTCCCCTGAGA-GGAGGCCCGTGGTGGAGTGTTACAATACGGTTATGGTCTTACCATGCGCTACAAGAAGACACTCATTGTCTCACATCTTTCACAGCCAGCTCAATGACATCACACACAGCACCCAAGGTCTTCGAACTTGTATTCAAAATCATATACCATT-AATTCAAATTAACTT-----------ATTAAGTCAGCTGGGAAAAACCTTAATATCGTAATACATGTTCTACAATATTTAAGTTACTGTTGTAGGTTTTCATAT----AGACTGAAAATAAGACACACTACTGCAAACACCTATC----CAAAGTCCTATCTGGTATACATCTTTCTCAAAGTGCC
i gorGor5.CYUI01015574v1    C 0 C 0
s nomLeu3.chr6              44477559 744 - 121039945 aTAACAATCTTTCCACGCACTTTTCACGCGGACTTCAGAGTGGGAACGCCTCTTTTCTGAGGACCCCG-CCCC-CAA-CCCTGCTGCTGAGCAGGCAGATACACCAGCGGGCAAAAGGGACGGGTCCCGCCGTCATGGTTCTTCAAGCAGTAAGACTCAGCTGATTTCATCAACAGCTGCGATTTCAACAGGAGGAGGGCCATGTCGTGACCCTCAAGTCCCCCAGGTCAGGATGGCACGTCACCCCCAGGCCACCTGCAGCCTTACCTGCCCTGAGTCCGTGACCGCCAGGCAGTGCTGGGCCCCGACGGCCCCATGCACGATCTTCTTCCCTTTCAGTCCTTCCACCACCTGCGGCTTCCACACGTGCACGTGAGAGCCGTGGCCCAATCTGAAGTAATCGCCCTTTCCCCTGAGA-GAAGGCCAATGGTGGAGTGTTACAATACGGTTATGGTCTGATAATGCTGTACAAGAAAACACTCATTGTCTCACATCTTTCACAGCCAGCTCAATGACATCACACACAGCACCCAAGGTCTTCGAACTTATATTCAAAATCATACACCAtt-aattcaaattaacttatttaatttgaattaaGTCAGCTGGGAAAAACCTGAATACCCTAATACATGTTTTACAATATTTAAGTTACTGTTGTAGGTTTTCATATACGGAGACTGAAAATAAGAC----TACGGCAAACACCTATC----CAAAGTCCTATCTGGTATACATCTTTCTCAAAGTGCC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               6179675 716 + 171882078 ATAACAATCTTTCCACACACTTTTCACGCAGACTTCAGAATGGGAACATGTCTTTTCTGAGGACCCCGCCCCC-CAACCCCTGCAGCC-------------------TGCTCAAAAGGGACGTGTCCTGCCCTCATGGTTCTTCAAGCAGTAAGACTTGGCTGATTTCATCAACAGTTGCGATTTCAACAGGACGAGCACCATGTCGTGACCCCCAAGTCCCCCAAGTCAGGATGGCACGCCACCCCCAGGCCACCTGCAGCCTTACCTGCCCCGAGTCCGTCACCGCCAGGCAGTGCAGGGCCCCGACGGCCACATGCACGATCTTCTTCCCTCTCAGCCCTTCCACCACCTGCGGTTTCCGCACGTGCACGTCAGAGCCATGGCCCAACCTGAAGTAATCCCCCTTTCCCCTGGGA-GAAGGCCAATGGTGGAGTGTTACAATAC-GTTATGGTCTGACAATGCTACACAGGAAAATGCTCA--GTCTCACATCTTTCACAGCCAGCTCAATGACACCACACACGGCACTCAGGGTCTTTGAACTTACATTCAAAATCATACACCATT-AATTCAAATTAACTT-----------ATTAAGTCAGCTGGG-AAAACCTTAATACTTTAATACATGTTTTACGATATTTAAGTTACTGTTGTAAGTTTTCATATAAAGAGACTGAAAATAAGACACACTACTGCAAACACTTATC----CAAAGTACTATCTGGTATATACCTTTCTCAAGCTGCC
i macFas5.chr7              C 0 I 15
s calJac3.chr6               3829495 700 + 158406734 ATAACAACCTTTCCAAAC---TTTCACGTGGACTTCAGAGTGGGAACACCTCTTTTCTAATGACCCCA-CCCCACAACCCCTGCTGCTGAGTGGGCA-------CAGTGGGCAAAATGGACAGGTCCCGCCCTCATGGTTCTTCAAGCAGTAAGACTCAGCTGATTTCATCCATAGCTGCGATTTCCACAGGATGAGCACTGTGTCCTGA---------TGCTCAAGTCAGGATGGCACACCACCCCTAGACCACCTGCAGCCTTACCTGCCCTGAGTCCGTGACTGCCAGGCAGTGCAGGGCCCCGACAGCCACATGCACGATCTTCTTCCCTCTCAGCCCTTCCACCACCTGTGGCTTCCGCACGTGCACATCAGAGCCATGGCCCAACCTGAAGTAATCCCCCTTCCCCCTGGGA-GAAAGACAGTGGTGGAGTGTCACAATATGATTACGGTCTGGCAATGCTGTACAAGAAAAC---------CTCACATCTTTTACAGCCGGCTCAATGACATCACACACAGCACCCAAGGTCTCTGAATTTATATTCAGAATCATACACCATTAAATTCAAATTAACTT-----------ATTAAGTCTGCTGTCAAAAACCTTAATATCTTAATACATGTTTTATGATATTCAAGTTACTGTTGTAGGTTTTCCTGTAAAGAGACTGAAAATAAGAC------------ACACCCATC----CAAAGTCCTATCTGGTATCCATCTTTCTCAAGCTGCC
i calJac3.chr6              C 0 I 9
s saiBol1.JH378292           2276092 722 +   2682657 ATAACACTCTTTCCACAC---TTCCACATGGACTTCAGAGTGGGAACGCCTCTTTTCTGAGGACCCCT-CCCCGCAACCCCTGCTGCTGAGTGGGCA-------CAGTGGGCAGAAGGGACGGGTCCCGCCCTCATAGTTCTTCAAGCAGTAAGACTCAGCTGATTTCATCCACAGCTGCGACTTCCACAGGACGAGGGCTGTGTCCTGA---------CGCTCAAGTCAGGATGGCAAGCCACCCCCAGGCCACCTGCAGCCTTACCTGCCCTGAGTCTGTGACTGCCAGGCAGTGCAGGGCCCCGACAGCCACATGCACGATCTTCTTCCCCCTTAGCCCTTCCACCACCTGTGGCTTCCGCACGTGCACGTCAGAGCCGTGGCCCAACCTGAAGTAATCCCCCTTCCCCCTGAGA-GAAAGACAATGGTGGAGTGTCACAATACGGTTATGGTCTGGCAATGCTGTACAAGAAAACACTCACCAGCTTACATCTGTTACAGTCAGCTCAATGACATCACACACAGCACCCAAGGGCTCTGAATTTATATTCAAAATCATACACCATTAAATTCAAATTAACTT-----------ATTAAGTCTGCTGTCAAAAACCTTAATATCTTAACACATGTTTTACGATATTCAAGTTACTGTT---GGTTTTTCTATAAAGAGACTGAAAATAAGACACACTACTGCAAACACCCATCCAAACAAAGTCCTATCTGGGATCCATCTTTCTCAAGCTGCC
i saiBol1.JH378292          C 0 I 15
e panTro5.chr15              9626348   0 +  83230942 C

a score=3815.000000
s hg38.chr15_KI270851v1_alt   231225 6 +    263054 AATGTC
s panPan2.chr15             71418922 6 -  99763055 AATGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1566585 6 -   1649220 AGTGTT
i gorGor5.CYUI01015574v1    C 0 C 0
s nomLeu3.chr6              44478303 6 - 121039945 AATGTT
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               3830204 6 + 158406734 AATATC
i calJac3.chr6              I 9 C 0
e panTro5.chr15              9626348 0 +  83230942 C
e saiBol1.JH378292           2276814 15 +   2682657 I
e macFas5.chr7               6180391 15 + 171882078 I

a score=161282.000000
s hg38.chr15_KI270851v1_alt   231231 343 +    263054 ggccagtagcagtggttcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacaaggtcaggagatcgagaccatcctggctaacatggtgaaaccctatctctactaaaaacac-aaaaaaattagccgggcatggtggcagacgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggagacggagcttgcagtgagctgagattgtgccactgcattccagcctgggcgacagagcgagactccatctcaaataaataaat-aaataaataaataaataaataaataaataGTGCCAATGTTATGACCAGA
s panPan2.chr15             71418928 327 -  99763055 ggccagtcgcggtggttcaggcctgtaatcccagcactttgggaggccgaggtgggtggatcacgaggtcaggagattgagaccatcctggctaacacggtgaaaccccatctctactaaaaatac-aaaaaaattagccgggcatggtggcagacacctgtagtcccagctactcgggaggctgaggcaggggaacggtgtgaaccccggaggcggagcttgcaatgagctgagattgtgccactgcattccagcctgggcgatagagcgagactccatctcaaataaataaat-aaataaataaata----------------GTGCCAATGTTATGACCAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1566591 327 -   1649220 ggccagtcgcggtggttcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacgaggtcaggagatagagaccatcctggctaacacagtg-aaccccatctctactaaaaatac-aaaaaaattagccgggcatggtggcagacgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaaccccggaggcggagcttgcaatgagctgagattgtgccactgtattccagcctgggcaatagagcgagactccatctcaaataaataaataaaataaataaaTA----------------GTGCCAATGTTATGACCAGA
i gorGor5.CYUI01015574v1    C 0 C 0
s nomLeu3.chr6              44478309 337 - 121039945 ggccagttgtggtggttcatgcctgtaatcccggcactttgggaggccgaggcaggtggatcacgaggtca-gagaccgagactatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaaattagccgggtatggtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagctgagattgtgccactgcattccagcctgggcgatagagcaagactccgtcttaaataaataaat-aaataaataataa-----ataaataaataGTGCCAATGTTATGA-CAGA
i nomLeu3.chr6              C 0 C 0
e panTro5.chr15              9626348   0 +  83230942 C
e saiBol1.JH378292           2276814  15 +   2682657 I
e calJac3.chr6               3830210   0 + 158406734 C
e macFas5.chr7               6180391  15 + 171882078 I

a score=978868.000000
s hg38.chr15_KI270851v1_alt   231574 610 +    263054 GGCAGCAAGGCCTGACACAGCATCCAAGGCCAGTCTGGGCACCTGCTCATTTGCACATTAATATAATAAGCTTTTACAAGAAATACATGTTAACTTTCTCAGGATCAAAGGATTCAGAAGGCTATTTTGCTCTCATTTTATCCTTAGGCTTCAGCAGAAGAAACACTTCCTATAAATCTCGCCCAAACAGGAAAGGTAAGTGGCCTAAAATTTTTCTAGTATTTTCAAAATGACCCAGTTACAATAGGAAATTTCTTCTTGTACTATTGTCACTAATCCCGACTCAATATCCTTTAAAGGACAAAGATGCATGCATAAGTAAAAATATGACAGGTCACAATCACGCCGGGGTGGTCCTGGGGCGAGGCCCAAGTTCCCTGCAC--GCGTCGGCACAAGCACGCACACTGTGACGGGGAGGACGTTTACGTACCATGTCCACACCACTCCAGACTTGGTGAGCGCCAGTAGGAACTGAGCTCCACACTCAATCTGGCACACCCCCTGTCCATTTAGTCTCTCAATGTTCTGGGGAATGTTGCAGCCTTCACTTCCGCCCCGGCCCAATTTTCCAAAGTCACCATCACCCCAGGAAAATACCAAACCTAGGTTT
s panPan2.chr15             71419255 611 -  99763055 GGCAGCAAGGCCTGACACAGCATCCAAGGCCAGTCTGGGCACCTGCTCTTTTGCACGTTAATATAATAAGCTTTAACAAGAAATACATGTTAACTTTCTCAGGATCAAAGGATTCAGTAGGCTATTTTGCTCTCATTTTATCCTTAGGCTTCAGCAGAAGAAACACTTCCTATAAATCTCGCCCAAACAGGAAAGGTAAGTGGCCTAAAATTTTTCTAGTATTTTCAAAATGACCCAGTTACAATAGGAAATTTCTTCTTGTACTATTGTCACTAATCCCAACTCAATATCCTTTAAAGGACAAAGATGCATGCATAAGTAAAAATATGACAGGTCACAATCATGCCGGGGTGGTCCTGGGGCGAGGCCCAAGTTccg-gcacaagcaccggcacaagcacGCACGCTGTGACGGGGAGGACGTTTACGTACCATGTCCACACCACTCCAGACTTGGTGAGCGCCAGTAGGAACTGAGCTCCACACGCAATCTGGCACACCCCCTGTCCATTTAGTCTCTCAATGTTCTGGGGAATGTTGCAGCCTTCACTTCCACCCCGGCCCAATTTTCCAAAGTCACCATCACCCCAGGAAAATACCAAACCTAGGTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1566918 603 -   1649220 GGCAGCAAGGCCTGACACAGCATCCAAGGCCAGTCTGGGCACCTGCTCTTTTGCACATTAATATAATAAGCTTT-ACAAGAAATACATG-TAACTTTCTCAGGATCAAAGGATTCAGAAGGCTGTTTTGCTCTCATTTT-TCCTTAGGCTTCGGCAGAAGAAACCCTTCCTATAAATCTCACCCAAACAGGAAAGGTAAGTGGCCTAAAATTTTTCTAGTA-TTTCAAAATGACCCAGTTACAATAGGAAATTTCTTTTTGTACTATTGTCACTAATCCCGACTCAATATCCTTTAAAGGACAAAGATGCATGCATAAGTAAAAATATGACAGG-CACAATCACGCCGGGGTGGTCCTGGGGC-AGGCCCAAGTTCCCTGCAA--GCGCCGGCACAAGCACGCACACTGTGACGGGGAGGACGTTTATGTACCATGTCCACACCACTCCAGACTTGGTGAACGCCAGTAGGAACTGAGCTCCACACTCAATCTGGCACA-CCCCTGTCCATTTAGTCTCTCAATGTTCTGGGGAATGTTGCAGCCTTCACTTCCGCCCCGGCCCAATTTTCCAAAGTCACCATCACCCCAGGAAAATACCAAACCTAGGTTT
i gorGor5.CYUI01015574v1    C 0 C 0
s nomLeu3.chr6              44478646 609 - 121039945 GGCAGCAAGGCCTGACACACCATCCAAGGCCAGTCCGGACACCTGCTCTTTTGTACATTAATATAATAAGCTTTTACAAGAAATACATGTTAACTTTTTCAGGATCAAAGGATTCAGAAGGCTATTTTGCTCTCATTTTATCCTTAGGCTTCAGCAGAAGAAACCCTTCCTATAAATCTCGCCCAAACAGGAAAGGTAAGTGGCCTAAAATTTTTCTAGTATCTTCAAAATGACCCAGTTACAATAGGAAATTTCTTCTTGTACTATTGTCACTAATCCCAACTCAATATCCTTTAAAGGACAAAGATGCATGCATAAGTAAAAACATGACAGGTCACAATCACGCCGGGGTGGTCCTGGGGCAAGGCCCAGGTTCCCTGCAT--GCGCCTGCACAAGCACACACACTGTGATGGGG-GGACGTTTATGTACCATGTCCACACCACTCCAGACTTGGTGAGCGCCAGTAGAAGCTGAGCTCCACACTCAATCTGGAACACCCCCTGTCCATTTAGTCTCTCAATGTTCTGGGGAATGTTACAGCCTTCACTTCCACCCCGGCCCAATTTTCCAAAGTCACCATCACCCCAGGAAAATGCCAAACCTAGGTTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               6180406 610 + 171882078 GGCACTAAGGCCTGACACACCATTCAAGGCCAGTCTGGGCACCTGCTCTTTTGCACATTAATAAAATAAGCTTTTACAAGAAATACATGTTAACTTTTTCAGGATCAAAGGATTCAGAAGGTTATTTTGCTCTCATTTTATCCTTAGGCTTCAGCAGAAGAAATCTTTCCTATAAATCTCACCCAAACAGGAAAGGTAAGTGGCCTAAAATTTTTCTATTATTTTCAAAATGACCCAGTTACAATGGGAAATTTCTTCTTGTACTATTGTCACTAATCTCAACTCAATATCCTTTAAAGGACAAAGACGCATGTATAAGTAAGAATCTGACAGGTCACAATCATGCCGGGGTGGGCCTGGCGTGAGGCCCACGTTCCCCACAC--GCACCTGCACAAGCACGCACACTGTGACAGGGAGGATGTTTACATACCATGTCCACACCACTCCAGACTTGGTGAGCGCCAGGGAGAACTGAGCTCCACACTCAATCTGGCACACCCCCTGTCCATTCAGTCTCTCAATGTTCTGGGGAATGTTACAGCCTTCACTTCCGCCCCGGCCCAATTTTCCAAAGTCACCATCACCCCAGGAAAATACCAAACCTAGGTTT
i macFas5.chr7              I 15 N 0
s calJac3.chr6               3830210 567 + 158406734 GGCACTAGGACCTGACACGCCATCCAAAGCCAGTCCGGGCACCTTC---TTCCCACATGAATAAAACAAGCTTTTACAAGAAACACATGTTAACTTTTTCAGGGTCAAAGGATTTAGAAGGCTATTTTGCTCTCACTTTATCCTTAGGCTTCAGCAAAAGAAACCC-TCCTAAGAATCTCATCCAAACAGGAAAGGTAAGTAGCCTAAAGTTTTTCTAGTATTTTCAACATGACTCAGTTACAATGGGAAACTTCTTCTTGTACTACTGTCACTAATCCCAACTCAATATCCTTCAAAGGACAAAGATGCATGCATAAGAAAGAATGCG---------------------------------------CCAGGTTCCCTGCAC--GCACCTGCACAAGCACGCATGCTGGGGCAGGGAGGAGGTTTACGTACCATGTCCACACCACTCCAGACTTGGTGAGGGCCAGGGAGAACTGAGCTCCACACTCAATCTGGCACACGCCCTGTCCGTTGAGCCTCTCAATGTTCTGGGGAACGTTGCAGCCTTCACTTCCACCTCGGCCCAATTTCCCAAAGTCACCGTCACCCCAGGAAAATACCAAACCTAGGTTC
i calJac3.chr6              C 0 N 0
s saiBol1.JH378292           2276829 570 +   2682657 GGCACTAGGGCCTGACACACCATCCAAGGCCAGTCCGGGCACCTGCTCTTTCCCGTATTTATAAAACAAGGTTTTACAAGAAATACATGTTAACTTTTTCAGGGTCAAAGGATTCAGAAGGCTATTTTGCTCTCATTTTATCCTTAGGCTTCAGCAGAAGAAACCCTTCCTAAGAATCTCATCCAAACAGGAAAGGTAAGTCGCCTAAAATTTCTCTAGTATTTTCAAAATGACCCAGTTACATTAGGAAATTTCTTC-TGTACTACTGTCACTAATCCCAACTCAGTATCATTTAAACGACAAGGATGCATGCGTAAGAAAGAACGCG---------------------------------------CCAGGTTCCCTGCAC--GCCCCTGCGAAAGCAGGCACGCTGTGGCAGGGAGGAAGTTTACGTACCATGTCCACACCACTCCAGACTTGGTGAGGGCCAGGGAGAACTGAGCTCCACACTCAATCTGGCACACGCCCTGTCCGTTGAGCCTCTCAATGTTCTGGGGAACGTTGCAGCCTTCACTTCCACCCCGGCCCAATTTCCCAAAGTCACCATCACCCCAGGAAAATACCAAACCTAGGTTC
i saiBol1.JH378292          I 15 C 0
e panTro5.chr15              9626348   0 +  83230942 C

a score=5372.000000
s hg38.chr15_KI270851v1_alt   232184 6 +    263054 AAAAAT
s panPan2.chr15             71419866 6 -  99763055 AAAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1567521 6 -   1649220 AAAAAT
i gorGor5.CYUI01015574v1    C 0 C 0
s nomLeu3.chr6              44479255 6 - 121039945 AAAAAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              55906279 6 - 171882078 agaaag
i macFas5.chr7              N 0 C 0
s calJac3.chr10             55805195 5 - 132174527 aagaa-
i calJac3.chr10             N 0 I 12
s saiBol1.JH378292           2277399 6 +   2682657 AAGAAT
i saiBol1.JH378292          C 0 N 0
e panTro5.chr15              9626348 0 +  83230942 C

a score=1048790.000000
s hg38.chr15_KI270851v1_alt   232190 724 +    263054 agggaagggaaggga--agggaagggaGAGAAGAAAGGAAAG------ATAAAGAAAGCCCAACCTCCTTCCAAAATGTCATGAGAATCTTGAGCACATATGGTCCTTGGCATGACCACATGACCTGCAGAGCCCCTGTTATAGAACTCATTTTTATATTTTCCTTAGTATAACAGTTAATATAATA-TGTCATTTTTGTTAATAGTGTCTTTTTGTCATTTTACtttttaaaag--attttattgaaatatacatacaggaaagtgcatctatcataagtgtgcaaattgatgaattctaaaatctttattgtacctgtttagcacatagattg--acactgaacataactaacaaccagaaatctccgtgtactcccttcctgtaactacccctgcgcccgaccaaatcactctcttctaacagcataactttgtgtgactag-cttttttaatgtaaaagaatgaaatc-tacagcatgtattcatttgca-------------tctggc-----------------------------------------ttctgccacccaacattatatttgtgggattcatttgtacagttgcatattagtttgcagatccctcactctcatttct-------------------------------------------------------------------------------------------------------------atatggtatta------------------------------------------tattgcataaacgtaccacactttatccaa-ctactgttaaatatttgtgcattttctacttgggggtgatttcaaatagtgctgctatgaacattct---tgtaaatgtcttttggtgaacatatgcaacacat-atatgcgttgttgttggt
s panPan2.chr15             71419872 719 -  99763055 agggaagggaaggga--aggga-----gagaagaaaggaaag------ataaagaaAGCCCAACCTCCTCCCAAAATGTCATGAGAATCTTGAGCACATATGGTCCTTGGCATGACCACATGACCTGCAGAGCCCCTGTTATAGAACTCATTTTTATATTTTCCTTAATATAACAGTTAATATAATA-TGTCATTTTTGTTAATAGTGTCTTTTTTTCATTTTACtttttaaaag--attgtattgaaatatacatacaggaaagtgcatctatcataagtgtgcaaattgatgaattctaaaatctttattgtacctgtttagcacctagattg--acactgaacataactaacaaccagaaatctctgagtactcccttcctgtaactacccctgcgcccgaccaaatcactctcttctaacagcataactttgtgtgactag-cttttttaatgtaaaagaatgaaatc-tacagcatgtgttcatttgca-------------tctggc-----------------------------------------ttctgccacccaacattatatttatgggattcatttgtacagttgcatattagtttgcagatccctcactctcgtttct-------------------------------------------------------------------------------------------------------------atatggtatta------------------------------------------tattgcataaacgtaccacactttatccaa-ctactgttaaatatttgtgcattttctacttgggggcaatttcaaatagtgctgctatgaacattct---tgtaaatgtcttttggtgaacatatgcaacacat-atatgcgttgttgttggt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1567527 713 -   1649220 AGGGAAGGGAAGGGA------------GAGAAGAAAGGAAAG------ATAAAGAAAGCCCAACCTCCTTCCAAAATGTCATGAGAATCTTGAGCACATATGGTCCTTGGCATGACCACATGACCTGCAGAGCCCCTGTTATAGAACTCATTTTTATATTTTCCTTAACATAACAGTTAATATAATA-TGTCATTTTTGTTAATAGTGTCTTTTTGTCATTTTACtttttaaaag--attttattgaaatatacatacaggaaagtgcatcta-cataagtgtgcaaattgatgaattctaaaatctttattgtacctgtttagcacctagattg--acactgaacataactaacaaccagaaatctccgtgtactcccttcctgtaactacccctgcgcccgaccaaatcactctcttctaacagcataactttgtgtgactag-cttttttaatgtaaaagaatgaaatc-tacagcatgtattcatttgca-------------tctggc-----------------------------------------ttctgccacccaacattatatttgtgggattcatttgtacagttgcatattagtttgcagatccctcactctcgtttct-------------------------------------------------------------------------------------------------------------atatggtatta------------------------------------------tattgcataaacgtaccacactttatccaa-ctactgttaaatatttgtgcattttttacttgggggcgatttcaaatagtgctgctatgaacattct---tgtaaatgtcttttggtgaacatatgcaacacat-atatgcgttgttgttggt
i gorGor5.CYUI01015574v1    C 0 C 0
s nomLeu3.chr6              44479261 711 - 121039945 agggaagggaaggga------------gagaagaaagaaaag------agaaagaaagCCCAACGTCCTTCCAAAATGTCATGAGACTCTTGAGCACATATGGTCCTTGGCATGACCACATGACCTGCAGAGCCCCTGTTATAGAACTCATTTTTATGTTTTCCTTAATATAACAGTTAATATAATA-TGTCATTTTTGTTAATAGTGTCTTTTTGTCATTTTACtttttaaaag--attttattgaaat----atacaggaaagtgcatctatcataagtgtgcaaattgatgaattctaaaatctttattgtacctgtttagcacctagattg--acactgaacataactaacaaccagaaatctccttgtactcctttcctgtaactacccctgctcccgaccaaatcactctcttctaacagcataactttgtgtgactag-cttttttaatgtaaaagaatgaaatc-tacagcatgtattcatttgca-------------tctggc-----------------------------------------ttctgccacccaacattatatttgtgggattcatttgtatagttgcatagtagtttgcagatccctcactcttgtttct-------------------------------------------------------------------------------------------------------------atatgatatta------------------------------------------tattgcataaatgtaccacactttatccaacctgctgttaaatatttgtgcattttctacttgggggcgatttcaaatagtgctgctatgaacattct---tgtaaatgtcttttggtgaacatatgcaacacag-atatgcgttgttgttggt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              55906285 785 - 171882078 aaagaaagaaagaaagaaagaaagaaagaaagagaaagaaag------aGCAAGCAAGCCCAACCTCCTTCCAAAAGGTCATGAGAATCTTGAGCACATATGGTTCTTAGCATGACGGCATGACCTGCAGAGCCCCTGTTATAAAACTCATTTTTAGGTTTTCCTTAATATAACAGTTAATGTAATAGTGTCATTTTTGTTAGTAGTGTCTTTTTGTTATTTTACttttcaaaac--attttattgaaatacacatacaggaaagtgcatgtgtcataagcgtgcaaattgatgaattctaaaattttgattgcacctgtttagcacctagatggatacactgaacataactaacaacgagaaatctccttgaactcccttcctgttactacccctgctcccaaccaaatcaccctcttctaatagcaaaacttcatgtaactaa-tttttttaatttaaaagaatgaaatcatacagcacatattcatttgcaggtacaactgaattctggcacccaacattatatttgtgaTGTTGGGTTGTAAtgttgggtttccggcacccaacattatatttgtgagattcatttgtacagttgcatattagtttgtagatccctcactctcctttct-------------------------------------------------------------------------------------------------------------gtataatatta------------------------------------------tattgcataaacataccatactttatccatcctactgttaaacatttgtgcagtttccacttgggggcgatttcaaatagtgctgctatcaacattct---tgtgaatgtcttttggtgaacatatacaacacat-acatgcattgttgttggc
i macFas5.chr7              C 0 C 0
s calJac3.chr10             55805212 828 - 132174527 --aagaaagaagaaagaaaggaaggaa--gaaagaaagcaagcaagcaagCGAGCCAGCCCAACCTCCTTCCAAAAGGTAATGAGAATCTTGAGCACATATGGCCCTTAGCATGACCACAGGACCTGGAGAACCCCTGTTAGAGAACTCATTTTTATATTTTCCTTAATATAA-----CAGTTAATAGTGTCATGTTTGTTAATTGTGTCTTTTTGTCATTTTACTTTATAAATGTACttatattgaaatatacgtacagaaaagtacatctattgtaagtgtgcaaattgatgaattctaatatctcgagtgcacctgtttagcacctggattgagacactgaaca----taacaaccagaag--tccttgcaca--cctcctgttactacccctgctcctgaccaattcactctcctctaacagcgtaacggtgtgtgactgattttttttaatttaaaacaaagaaatcatacagcatgtattcatttgca-------------tttggc-----------------------------------------ttctgccacccaacattatatttgtgagattcattggtacagttgcatatttgtttgcagatccctcactcttgtttctgtagggtattatattgcacaaatatacc-----------------------------------------------gtatggtatcacatgcataagtatgggattatatatatggtattatgtgcataaatggtatgcatattggcatctggcatgctgttatattgcatga--ataccatactttatccgtcatactgttgaacatttgtgcagtttccacttgggggtgatttcaaatagtgctgctaccaatattctctctgtatgt-tcttttggtgaacacatgcaacacatgatatgcattgtttttggt
i calJac3.chr10             I 12 I 12
s saiBol1.JH378143           7189408 819 +  18744880 --aggaaggaaggaaggaaggaagggagggaaggaaggaaAGCCAGCCAGCCAGCCTGCCCAACCTCCTTCCAAAAGGTCATGAGAATCTTGAGCACATATGGCCCTTGGCATGACCACATGACCTGCAGAGCCCCTGTTAGAGAACTCATTTTTGTATTTTCCTTAATATAA--GTTAATATAATAGTGTCA--TTTGTTAATAGTGTC--TTTGTCATTTTACtttttaaatgtaaatttattgaaatacaggtacaggaaagtacatctattgtaagtgtgcaaattgatgaattctaaaatcttgagtgcacctgtttagcacctagattgagacactgaacataactaacaacaggaagtctccttgcaca-ccctcctgttaccacccctgcccctgaccaattcactcttttctaacagcataactgtgtgtgactaa-tttttttaatttaaaagaaagaaatcatacggcatgtattcatttgca-------------tttggc-----------------------------------------ttctgccacccaacattatatttgtgagattcatttgtacggctgcatattcg-ttgtagatccctcactctcatttctgtagggcattatattacataaatatcccatacggtatcacatgcataaatacggtattatgtgcatagatggcatgc--------------------------------atatggtatta-----------------------------tggcatgctattatattgcatgaatataccacactttatcagtcatactgttgaacatttgtgcagtttccacttgggggcgatttcaaatagtgctgctatcaatattct---tgtaaatgtcttttggtgaacacatacaacacat-atatgcattgtttctggt
i saiBol1.JH378143          N 0 C 0
e panTro5.chr15              9626348   0 +  83230942 C

a score=59117.000000
s hg38.chr15_KI270851v1_alt   232914 47 +    263054 tcccaggaggggcattcctgggtcataaacaatgcgtgtgttcaggt
s panPan2.chr15             71420591 47 -  99763055 tcccaggaggggcattcctgggtcataaacaatgcatgtgttcaggt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1568240 47 -   1649220 tcccaggaggggcattcctgggtcataaacaatgcgtgtgttcaggt
i gorGor5.CYUI01015574v1    C 0 C 0
s nomLeu3.chr6              44479972 47 - 121039945 tcccaggagcggcattcttgggtcataaacaatgcatgtgttcaggt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              55907070 47 - 171882078 tcccaggagtggaattcctgggtcataaacaacgcatgtgttcaggt
i macFas5.chr7              C 0 C 0
s saiBol1.JH378143           7190227 47 +  18744880 tcccaggagtggatttcctgggtcatacacaatgcatgtgttcaggt
i saiBol1.JH378143          C 0 C 0
e panTro5.chr15              9626348  0 +  83230942 C
e calJac3.chr10             55806040 12 - 132174527 I

a score=1829754.000000
s hg38.chr15_KI270851v1_alt   232961 1136 +    263054 ttagtacagtataatgccaaacaggtttccaaagtgtttgtgccactttacatacctgccattattgaaaaagagttctgtttgctccacattgtcaccaatacttgatattttctgttttttttttcttttaaaccgtactagtgggtgtgcagtgatattgcaatgtggttttaatttgcatcttccttgtgac-----AACC-----TTGATTACTGTAAGCCACTTGGAAATGTGATTTAAATTCATATAAAGATATAGTAGC-AAAACGCATACTAGGTTACTTTCGTATCCAGAAAGTTTAGATAGAATGATTTC-TATGTAAGCTTTTACTGTGTAGTCTGAGTCCATGAA---TATTGATTAC-AAAAAACACATCTGTAGGTGAGTTACAATACCTCACTTATAATTCCAAATTCATGTTGTGTTAGCTCAATATTTTTCAAATA-ATTTTTGCATGCAATTTTCACCTTCTTTCTGAGTAGTTTCAGGTATTTTGTATGGTTCCAG--CAGTCAGTTAGGTTGCCATTGTTTGGAAGCACACATCCACGTATCTGCACCATGATGATATGACACACCCATACCCCCCATTTCACATTTTGTCAGAAGTGCATAGTTATC----ACTAACTTTGCCAGTAGAAATGTACTCCCAATTTCCCACGGACTTATCTTGAATAATCTCTCCACTGAAGCATAACAGGTTTTGAATTCTGTTAGAATAGTTGTTTTTACTATCTTTTAATTTTATACAAATTTCAAAGTTACGTAATACTTTTATTTAAAAAGTGAAACAAAGCTTTTCCTCTCCCTTACCCACATGTTAGTCCAGCAGAGGGGGAAAGCATTGGACCCAGGCCAAAATCATAAACGCTTTCAATTAACTAATAATAATTGCTGGCATGTTGCCA-TTAAATATTCTTGTCTCATTATCTCTGGTTGCTTTATCAAACCCATAGGTCACTGAAGCCCACTTTTGAGACAAAGACTATTTCTCCCCCAAAAGTCAAGGGAAATATAAAAAATGAAATTAGTGATTAAGAATAGAAGTCAATTAATACAATCATTTTGTCTTAATTATTTAAAGTCCAGTTTTTTCCCTCCAGCAAACCTGAAAATACACTATCCTCCAGCTATCAGAATTATATTGA
s panPan2.chr15             71420638 1130 -  99763055 ttagtatggtataatgccaaacaggtttccaaagtgtttgtgccactttacatacccgccattattgaaaaagagttctgtttgctccacattttcaccaatatttgatattttgggtttttttt--cttttaaaccatactagtgggtgtgcagtgatattgcaatgtggttttaatttgcatcttccttgtgac-----AACC-----TTGATTACTGTAAGCCACTTGGAAATGTGATTTAAATTCATATAAAGATATAGTAGC-AAAACACATAGTAAGTTACTTTCATATCCAGAAAGTTTAGATAGAATGATTTC-TATGTAAGCTTTTACTGTGTAGTCTGAGTCCATGAA---TATTGATTAC-AAAAAACACATCTGTAGGTGAGTTACAATACCTCACTTATAATTCCAAATTCATGTTGTGTTAGCTCAATATTTTTCAAATA-ATTTTTGCATGCAATTTTCACCTTCTTTCTGAGTAGTTTCAGGTATTTTGTATGGTTTCAG--CAGTCAGTTAGGTTGCCATTGTTTGGAAGCACACATCCACGTATCTGCACCATGATGATATGACACGCCCCTACCTCCCATTTCGCATTTTGTCAGAAGTGCATAGTTATC----ACTAACTTTGCCAGTAGAAATGTACTCCCAATTTACCACGGACTTATCTTGAATAATCTCTCCACTGAAGCATAACAGGTTTTGAATTCTGTTAGAATAGTTGTTTTTACT----TTTAATTTTATACAAATTTCAAAGTTATGTAATACTTTTATTTAAAAAGTGAAACAAAGCTTTTCCTCTCCCTTACCCACATGTTAGCCCAGCAGAGGGGGAAAGCATTGGCCCCAGGCCAAAATCATAAATGCTTTCAATTAACTAATAATAATTGCTGGCATGTTGCCA-TTAAATGTCCTTGTCTCATTACCCCTGGTTGCTTCATCAAACCCGTAGGTCACTGAAGCCCACTTTTGAGACAAAGACTATTTCTCCCCCAAAAGTCAAGGGAAATATAAAAAGTGAAATGAGTGATTAAGAATAGAAGTCAATTAATACAATCATTTTGTCTTAATTATTTAAAGTCCAGTTTTTTTCCTCCAGCAAACCTGAAAATACACTATCCTCCAGCTATCAGAATTATATTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1568287 1129 -   1649220 ttagtatagtataatgccaaacaggtttccaaagtgtttgtgccactttacatacccgccattattgaaaaagagttctgtttgctccacattttcaccaatacttgatatttt-tgtttttttt--cttttaaaccgtactagtgggtgtgcagtgatattacaatgtggttttaatttgcatcttccttgtgac-----AACC-----TTGATTACTGTAAGCCACTTGGAAATGTGATTTAAATTCATATAAATATATAGTAGC-AAAA-GCATACTAGGTTACTTTCGTATCCAGAAAGTTTAGATAGAATGATTTC-TATGTAAGCTTTTACAGTGTAGTCTGAGTCCATGAA---TATTGATTAC-AAAAAACACATCTGTAGGTGAGTTACAACACCTCACTTA-AATTCCAAATTCATGTTGTGTTAGCTCAATATTTTTCAAATATATTTTTGCATGCAATTTTCACCTTCTTTCTGAGTAGTTTCAGGTATTTTGTATGGTTCCAG--CAGTCAGTTAGGTTGCCATTGTTTGGAAGCACACAT-CACGTATCTGTA-CATGATGTTATGACACGCCCATACC-CCCATTTCGCATTTTATCAGAAGTGCATAGTAATC----ACTAACTTTGCCAGTAGAAATGTACTCCCAATTTCCCATGGACTTATCTTGAATAACCTCTCAACTGAAGCATAACAGGTTTTGAATTCTGTTAGAATAGTTGTTTTTACTATCTTTTAATTTTATAAAAATTTCAAAGTTATGTAATACTTTTACTTAAAAAGTGAAACAAAGCTTTTCCTCTCCCTTACCCACATGATAGTCCAGCAGAGGGGGAAAGCATTGGCCCCAGGCCAAAATCATAAACGCTTTCAATTAACTAATAATAATTGCTGGCATGTTGCCA-TTAAATATTCTTGTCTCATTATCTCTGGTTGCTTTATCAAACCCATAGGTCACTGAAGCCCACTTTTGAGACAAAGACTATTTCTCCCCCAAAAGTCAAGGGAAATATAAAAAATGAAATTAGTGATTAAGAATAGAAGTCAATTAATACAATCATTTTGTCTTAATTATTTAAAGTCCAGTTTTTTTCCTCCAGCAAACCTGAAAATACACTATCCTCCAGCTATCAGAATTATATTGA
i gorGor5.CYUI01015574v1    C 0 C 0
s nomLeu3.chr6              44480019 1143 - 121039945 ttagtatagtataatgccaaacaggtttccaaagtgtctgtgccactttacatacccgccattattgagaa--agttctatttgctccacattgtcaccaatacttgatattttccgttttttt---cttttaaaccgtactagtgggtgtgcagtgatattgcaatgtggttttaatttgcatcttccttgtgacaaattaaCC-----TTGATTACTGTAAGCCACTTGGAAATGTGATTCGAATTCATATAAAGATATGGTAGC-AAAACGCATGCTAGGTTACTTTCATGCCTGGAAAGTTTAGATGGAATGATTTC-TATGTAAGCTTTTACAGTGTAGTCTGAGTCCATAAA---TATTGATTAC-AAAAAACACATCTGTAGGTGAGTTACAATACTTCACTTATCATTCCAAGTCCATGTTGTGTTAGCTCAATATTTTTCAAATATATTTTTGCATGCAATTTCCACCTTCTTTCTGAGTAGTTTCAGATATTTTGTATGGTTCCAGCACAGTCAATTAGGTTGCCATTGTTTGGAAGCACACATCCATGTATCTGCACCACGATGATATGACGCGCCCATACCCCCCATTTCGCATTTTCTCAGAAGTGCATAGTTATCACTGACTAACTTTGCCAATAGAAATGTACTCCCAATTTCCCATGGACTTATCTTGAATAATCTCTCAACTGAAGCATAACAGGTTTTGAATTCTGTTAGAATAGTTATTTTCACTATCTTTTAATTTTATTAAAATTTCAAAGTTACTTAATACTTTTATTTCAAAAGTGAAACAAAGCTTTTCCTCTCCCTTACCCACATGATAGCCCAACAGAGGGGGAAAGCATTGGCCCCAGGCCAAAACCATAACCGCTTTCAATTAACTAATAATAATTGCTGGCATGTTGCCA-TTAAATATCCTTGTCTCATTATCTCTGGTTGCTTTATCAAAGCCATAGGTCACTAAAGCCCACTTTTGAGACAAAGACTATTTCTCCCCCAAAAGTCAAGGGAAATATAAAAAATGAAATTAGTGATTAAGGATAGAAGCCAATTAATACAATCATCTTGTCTTAATTATTTAAAGTCCAGTTTTTTTCCTCCAGCAAACCTGAAAATACACTATCCTCCAGCTATCTGAATTATATTGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              55907117 1150 - 171882078 ttagtacagtataatgccaaacaggtttccaaagtgtttgtgccactttacatacccaccattattgaaaaagagttctatttacaccacattgtcaccaatacttgatatgttctgttttttttttctttttaactatactagtaggtgtgtagtgatattacaatgtggttttaatttgcatcttccttatgacaaattaaCCTTGATTTGATTACTGTAAGGCACTTAGAAATGTGATTTAAATTCACATAAAGAT---GGAAT-AAAACGCATATAAGGTTGCTTTCATACTTGGAAAGTTTATATAAAATGATTTC-TATGTAAGCTTTTACAGTGTAGTCTGAGTCCCTAAA---TACTGATCAC-AAAAAACACATCTGTAGGTGAGTTACAATACCTCACTTATAATTCCACATTCATGTTATATTAGCTCAATATTTTTCAAATATATTTTTGCATACAATTTTCACCTTCTTTTTGAGTAGTCTCGGGTATTTTGTATGGTTCCAGCACAGCGAGTTAGGTTACCATCGTTTGGAAGCACACGTCCGCGTATCTGCACCATGATGATATGACACGCCCATACCCCCCATTTCGTATTTTGTCAGAAGTGCATAGCTATCACCGACAAACTTTG-CAGTAGAAATTTTCTCCCAATTTCAAATGGACTTATCTTGAATAATCTCTCAACTGAAGCATAACAGGTTTTTAGTTCTGTTAGAATAGTTGTTTTTACTATCTTTTAATTTTATAAAAATGTCAAAGTTACTTAATACTTTTATTTAAAAAGTAAAACAAAGCTTTTCCTCTCCCTTACCCACATTATAGCCCAGCGGAGGGGAAAAGCATTGGCCCCAGGCCAAAATCATAAAAGCTTTCAATTAACTAACAATAATTGCTGGCATGTTGCCATTTAAATATCCTTGTCTCGTTATCTCTGGTTGCTTTATCAAACCCATAGGTCACTAAAGCCCACTTTTGAGACAAAGATTATTTCTCCCCCAAAAGTCAAGGGAAATGTAAAAAATGAAATTAGTGATTAAGGATAGAAGTTAATTAATACAATCATTTTGGCTTAATTATTTAAAGTCCAGTTTTTTTCCTCCAGCAAATCTGAAAATACACTATCCTCCAGCTATCAGAATTATATTGA
i macFas5.chr7              C 0 C 0
s calJac3.chr10             55806052 1154 - 132174527 ttagtagagtataatgccgaacaggttt-caaagggttggggccactttacatacccatcattattgtaaaagagttctatttgctccacagtgtccccagtgcttgatattttcta---cttttttctttttagccacactactgggtgtttaatggtatagcaatgggattttaatttgcatctttcttgtgacaaattaaCCTTAATTTTATTACTATCAGGCATGTGGAAATGTGACTTAAATGCATATAAAGATACAGTCTTGAAAACGGATACAA-GTTACTTTCATACTTGGAAAGTTTACACAGAATAATTTC-TATGTAAGCTTTTACAGTGTAGTCTGAGTCCATAAATTTTTTTGATTACAAAAAAACGCATCTGTAGGCGAGTTACAATACCTCACTTATAATTCCACATTCACATTATATTAGCTCAGTATTTTTCACATATATTTTTGCAGACTATTTTCACCTTCTTTTTGAGTGGTCTCAGGTATTTTGTCTGGATCCAGCACGGCAAGTTAGGCTGCCATTATTTGGATGCCCACATCCACATATCTGCACCGTGATGATATGACGCGCCCATACCTCCCACTTTGCATTTCGTCAGAAGTGCATAGCTATCACTGACAAACTCCACCAGTAGAAATTTTCTCCCAATTTCACATGGACTTATCTTGAATAATCTTTCAACTGAAGCATAACAGGTTTTGAATTCTGTTAGAATAGTTGTTTTTACTATCTTTTAATTTTATAAAAATTTCAAGGTTACTTAATACTTTCATTTAAAAAGTGAAACAAACCTTTTTCTCTCCCTTACCCACAGGATAACCCAGCAGAGGGGAAAAACATTGGCCCCAGGTCAAAATCATAAAAGCTTTTAATTAACTAATAATAATCGCTGGCATGTTGCCATTTAAATATCCTTGCCTCGTTATCGCTGGTTGCTTTATCAAACCCACAGGTCACTAAAGCCCACTTTTGAGACAAAGACTATTTCTCCCCCAAAAGTCAAGGGAAATATAAAAAATGAAGTTAGTGATTAAGGATGTAAGTTAATTAATACAATCATTTTGGCTTAATTATTTAAAGTCCAGTTTTTTTCCTCCAGTAAACCTGAAAATACACTATCCTCCAGCTATCAGAATTATATTGA
i calJac3.chr10             I 12 I 77903
s saiBol1.JH378143           7190274 1143 +  18744880 ttagttgagtataatgccatacaggtttccaaagtgtttgtgccactttacatacccatcattattgtaaaagagttctatttgctccacattgtccccagtgcttgacagtttctattttttttttctttttagccatactactgggtgtttcgtggtatagcaatgggattttaatttgcatctttcttatgac-----------AATTTTATTACTATCACGCATGTGGAAATGTGATTTAAATGCATTTAAAGATACAGTAATGAAAACGGATACAAGGCTACTTTCATACTTGGAAAGTTTACATAGAATGATTTCTTATGTAAGCTTTTATAGTGTAGTCTGAGTCCATAAA---TATTGATTAC-AAAAAACACATCTGTAGGTGAGTTACAATACCTCGCGTATAATTCCACATTCATTTTATATTAGCTCAGTATTTTTCAAATATATTTTTGCAGACAATTTTCACCTTCTTTTTGAGTGGTCTCAGATATTTTGTCTGGATCTAGCACAGGGAGTTAGGCTGCCATTGTTTAGATGCACACATCTATGTATCTGCACCATGATGATACGACATGCCCCTATCCCCCTCTTTGTGTTTCGTCCTAAGTGCATAGCTATCACTGACAAACTTTGCCAGTAGAAATTTACTCCCAATTTCACATGGACTTATCTTGAATAATCTCTCAACTGAAGCATAACAGGTTTTGAATTCTGTCAGAATAGTCGTTTTTACTACCTTTTAATTTTATAAAAATTTCAAGGTTACTTAATACTTTCATTTAAAAAGTGAAACAAAGCTTTTTCTCTCCCTTACCCACA-GATGGCCCAGCAGAGGGGAAAAACATTGGCCCCAGGCCAAAATCATAAAAGCTTTCAATTAACTAATAATAATTGCTGGCATGTTGCCATTTAAATATCCTTGCGTCGTTATCGCTGGTTGCTTTATCAAACCCATAGGTCACTAAAGCCCACTTTTGAGACAAAGACTATTTCTCCCACAAAAGTCAAGGGAAATATAAAAAATTAAGTTAGTGATTAAGGATATAAGTTAATTAATACAATCATTTTGGCTTAATTATTTAAAGTCCAGTTTTTTTCCTCCAGCAAACCTGAAAA-ACACTATCCTCCAGCTATCAGAATTATACTGA
i saiBol1.JH378143          C 0 I 76626
e panTro5.chr15              9626348    0 +  83230942 C

a score=11909.000000
s hg38.chr15_KI270851v1_alt   234097 4 +    263054 GATC
s panPan2.chr15             71421768 4 -  99763055 GATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1569416 4 -   1649220 GATT
i gorGor5.CYUI01015574v1    C 0 C 0
s nomLeu3.chr6              44481162 4 - 121039945 GATC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              55908267 4 - 171882078 GATT
i macFas5.chr7              C 0 I 71911
s chlSab2.chr24             56124243 4 -  84932903 GATC
i chlSab2.chr24             N 0 C 0
s colAng1.NW_012119265v1    12867991 4 -  12953760 GATC
i colAng1.NW_012119265v1    N 0 C 0
s calJac3.chr10             55885109 4 - 132174527 GATC
i calJac3.chr10             I 77903 C 0
s saiBol1.JH378143           7268043 4 +  18744880 GATC
i saiBol1.JH378143          I 76626 C 0
e panTro5.chr15              9626348 0 +  83230942 C

a score=3841535.000000
s hg38.chr15_KI270851v1_alt   234101 578 +    263054 TACTCACATTTATGATGATGTTCAGAGATTC-TCATTGGGAAGGAAAAGGCACACGCTGCGGCGGTCTTGCATGACTCTGTTGTTGTGGAAATTCAATTTGTTCATTGTGTTTTGGGCTCTCTGGGTGGTCAGGGCTGGGCTCTGGGTCCTTGGCAATTCCTCAGGTTCCCAGCACTCCAAA-GCCAAGCTCACCTCCTCATCACACACCCTGCAGGAGAAGCATTAGGGTGTCCGACTACGTGGGTTTCATAGCTGTGGAAAAGCC--AAAGGGGAGACTCCTGAAGAAAGGCGGTGAAGACTGTGAAGAGCGGGTCAGGAAGATGAGCACAGCACTGCTACTCCTGTGGGCACAGGGAC-------AGCATGTCTCCAGCCAGCGCCACCTTGTTTAATACATGGGAACTCACTGAAATTCATTCTGTATTTTGCCCGCAAAGTTTTAAAGATTTCATCCACAGTCAGGAATTAAACTTAT-ACCAATGAGAGCCTCACACATTCAAGGATGTACTAAGCACTACAGGCCTCACAGAAACAGAGATCCCATCTTGGAG---TTTTCAGTACCACATGGGAGAT----AAAGGGTT
s panPan2.chr15             71421772 579 -  99763055 TACTCACATTTATGATGATGTTCAGAGATTCATCATTGGGAAGGAAAATGCACACGCTGCGGCGGTCTTGCATGACTCTGTTGTTGTGGAAATTCAATTTgttcattgtgttttgggctctctgggtggtcagggctgggttctgggtccttggCAATTCCTCAGGTTCCCAGCACTCCAAA-GCCAAGCTCACCTCCTCATCACACGCCCTGCAGGAGAAGCATCAGGGTGTCCGACTACGTGGGTTTCATAGCTGTGGAAAAGCC--AAAGGGGAGACTCCTGAAGAAAGGCGGTGAAGACTGTGAAGAGCGGGTCAGGAAGATGAGCACAGCACTGCTACTCCTGTGGGCACAGGGAC-------AGCATGTCTCCAGCCAGCGCCACCTTGTTTAATACATGGGAACTCACTGAAATTCATTCTGTATTTTGCCCGCAAAGTTTTAAAGATTTCATCCACAGTCAGGAATTAAACTTAT-ACCAATGAGAGCCTCACACATTCAAGGACGAACTAAGCACTACAGGCCTCACAGAAACAGAGATCCCATCTTGGAG---TTCTCAGTCCCACATGGGAGAT----AAAGGGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1569420 579 -   1649220 TACTCACATTTATGATGATGTTCAGAGATTCATCATTGGGAAGGAAAATGCACACACTGTGGCGGTCTTGCATGACTCTGTTGTTGTGGAAATTCAATTTGTTCATTGTGTTTTGGGCTCTCTGGGTGGTCAGGGCTGGGCTCTGGGTCCTTGGCAATTCCTCAGGTTCCCAGCACTCCAAA-GCCAAGCTCACCTCCTCATCACACGCCCTGCAGGAGAAGCATCAGGGTGTCCGACTACGTGGGTTTCATAGCTGTGGAAAAGCC--AAAGGGGAGACTCCTGAAGAAAGGCGGTGAAGACTGTGAAGAGCGGGTCAGGAAGATGAGCACAGCACTGCTACTCCTGTGGGCACAGGGAC-------AGCATGTCTCCAGCCAGCGCCACCTTGTTTAATACATGGGAACTCACTGAAATTCATTCTGTATTTTGCCCACAAAGTTTTAAAGCTTTCATCCACAGTCCGGAATTAAACTTAT-ACCAATGAGAGCCTCACACATTCAAGGATGTACTAAGCACTGCAGGCCTCACAGAAACAGAGACCCCATCTTGGAG---GTTTCAGTCCCACATGGGAGAT----AAAGGGTT
i gorGor5.CYUI01015574v1    C 0 C 0
s nomLeu3.chr6              44481166 576 - 121039945 TACTCACATTTATGATGATGTTCAGAGATTCATCATTGGGAAGGAAAATGCACACGCTGCGGCAGTCTTGCATGACTC---TGTTGTGGAAATTCAACTTGTTCATTGTGTTTTGGGCTCTCTGGGTGGTCAGGGCTGGGCTCTGGGTCCTTGGCAATTCCTCAGGTTCCCAGCACTCCAAA-GCCAAGCTCACCTCCTCATCACACGCCCTGCAGGAGAAGCATCAGGGTGTTCGACTACATGGGTTTCATAGCTGTGGAAAAGCC--AAAGGGGAGACTCCTGAAGAAAGGCAGTGAAGCCTGTGAAGGGCGGGTCAGGAAGATGAGCACAGCACTGCTACTCCTGTGGGCACAGGGAC-------AGCATGTCTCCAGCCAGCGCCACCTTGTCTAATACATGGGAACTCACTGAAATTCATTCTGTATTTTGCCCACAAAGTTTTACAGCTTTCATCCACAGTCAGGAATTAAACTTAT-ACCAATGAGAGCCCCACACATTCAAGGATGTACTAAGCACTACAGGCCTCACAGAAACAGAGATCCTGTCTTGGAG---TTTTCAGTCCCACATGGGAGAT----AAAGGGTT
i nomLeu3.chr6              C 0 I 308
s rheMac8.chr7              55906159 582 - 169600520 TACTCACATTTATGATAATGTTCAGAGATTCATCGTTGGGAAGGAAAATGCACACGCTGCGGCGGTCTTGCATGACTCTGTTGTTATGGAAATTCAATTTGTTCATTGTGTTTTGGGCTCTCT-GGTGGTCAGGGCTGGGCTCTGGGTCCTTGGCAATTCCTCAGGTTCCCAGCACTCCAAA-GCCAAGCTCGCCTCCTCATCACACGCCCTGCAGGAGAAGCATCATGGTGTTCGACTACGTGGGTTTCATAGCTGTGAAAAAGCC--AAAGGGGAGACTCCTGAAGAAAGGCGGTGAAGACTGTGAAAAGCAGGTTGGGAAGATGAACACAGCACTACTACTCCTGTGGGCACAGAGAC-------AGCATGTCTCCAGCCAGCACCACCTTGTTTAATACATGGGAACTCACTGAAATTCATTCTGTATTTTGCCCACAAAGTTTTAAAGCTTTCATCCACAGTCAACAATTAAACTTATAACCAATGAGAGCCTCACACATTCAAGGATGTACTAAGCACTACAGGCCTCACAGAAACAGAGATCCTGTCTTGGAGGAATTTTCCATTCCACATGGGAGAT----AAAGGGTT
i rheMac8.chr7              N 0 C 0
s macFas5.chr7              55980182 582 - 171882078 TACTCACATTTATGATAATGTTCAGAGATTCATCGTTGGGAAGGAAAATGCACACGCTGCGGCGGTCTTGCATGACTCTGTTGTTATGGAAATTCAATTTGTTCATTGTGTTTTGGGCTCTCT-GGTGGTCAGGGCTGGGCTCTGGGTCCTTGGCAATTCCTCAGGTTCCCAGCACTCCAAA-GCCAAGCTCGCCTCCTCATCACACGCCCTGCAGGAGAAGCATCATGGTGTTCGACTACGTGGGTTTCATAGCTGTGAAAAAGCC--AAAGGGGAGACTCCTGAAGAAAGGTGGTGAAGACTGTGAAAAGCAGGTTGGGAAGATGAACACAGCACTACTACTCCTGTGGGCACAGAGAC-------AGCATGTCTCCAGCCAGCACCACCTTGTTTAATACATGGGAACTCACTGAAATTCATTCTGTATTTTGCCCACAAAGTTTTAAAGCTTTCATCCACAGTCAACAATTAAACTTATAACCAATGAGAGCCTCACACATTCAAGGATGTACTAAGCACTACAGGCCTCACAGAAACAGAGATCCTGTCTTGGAGGAATTTTCCATTCCACATGGGAGAT----AAAGGGTT
i macFas5.chr7              I 71911 C 0
s macNem1.NW_012019132v1     3564114 582 +  14689368 TACTCACATTTATGATAATGTTCAGAGATTCATCGTTGGGAAGGAAAATGCACACGCTGCGGCGGTCTTGCATGACTCTGTTGTTATGGAAATTCAATTTGTTCATTGTGTTTTGGGCTCTCT-GGTGGTCAGGGCTGGGCTCTGGGTCCTTGGCAATTCCTCAGGTTCCCAGCACTCCAAA-GCCAAGCTCGCCTCCTCATCACACGCCCTGCAGGAGAAGCATCATGGTGTTCGACTACGTGGGTTTCATAGCTGTGAAAAAGCC--AAAGGGGAGACTCCTGAAGAAAGGCGGTGAAGACTGTGAAAAGCAGGTTGGGAAGATGAGCACAGCACTACTATTCCTGTGGGCACAGAGAC-------AGCATGTCTCCAGCCAGCACCACCTTGTTTAATACATGGGAACTCACTGAAATTCATTCTGTATTTTGCCCACAAAGTTTTAAAGCTTTCATCCACAGTCAACAATTAAACTTATAACCAATGAGAGCCTCACACATTCAAGGATGTACTAAGCACTACAGGCCTCACAGAAACAGAGATCCTGTCTTGGAGGAATTTTCCGTTCCACATGGGAGAT----AAAGGGTT
i macNem1.NW_012019132v1    N 0 C 0
s cerAty1.NW_012010133v1    10915097 583 -  13028613 TACTCACATTTATGATAATGTTCAGAGATTCATCGTTGGGAAGGAAAATGCACACGCTGCGGCGGTCTTGCATGACTCTGTTGTTATGGAAATTCAATTTGTTCATTGTGTTTTGGGCTCTCT-GGTGGTCAGGGCTGGGCTCTGGGTCCTTGGCAATTCCTCAGGTTCCCAGCACTCCAAAGGCCAAGCTCGCCTCCTCATCACACGCCCTGCAGGAGAAGCATCATGGTGTTCGACTACGTGGGTTTCATAGCTGTGAAAAAGCC--AAAGGGGAGACTCCTGAAGAAAGGCGGTGAAGACTGTGAAAAGCAGGTTGGAAAGATGAACACAGCACTACTACTCCTGTGGGCACAGAGAC-------AGCATGTCTCCAGCCAGCACCACCTTGTTTAATACATGGGAACTCACTGAAATTCATTCTGTATTTTGCCCACAAAGTTTTAAAGCTTTCATCCACAGTCAACAATTAAACTTATAACCAATGACAGCCTCACACATTCAAGGATGTACTAAGCACTATAGGCCTCACACAAACAGAGAGCCTGTCTTGGAGGGATTTTCCATTCCACATGGGAGAT----AAAGGGTT
i cerAty1.NW_012010133v1    N 0 C 0
s chlSab2.chr24             56124247 582 -  84932903 TACTCACATTTATGATAATGTTCAGAGATTCATCGTTGGGAAGGAAAATGCACACGCTGCGGCGGTCTTGCATGACTCTGTTGTTATGGAAATTCAATTTGTTCATTGTGTTGTGGGCTCTCT-GGTGGTCACGGCTGGGCTCTGGGTCCTTGGCAATTCCTCAGGTTCCCAGCACTCCAAA-GCCAAGCTCGCCTCCTCATCACACGCCCTGCAGGATAAGCTTCATGGTGTTCGACTATGTGGGTTTCATAGCTGTGAAAAAGCC--AAAGGGGAGACTCCTGAAGAAAGGCGGTGAAGACTGTGAAAAGCAGGTTGGGAAGATGAACACAGCGCTACTACTCCTGTGGGCACAGAGAC-------AGCAAGTCTCCAGCCAGCACCACCTTGTTTAATACATGGGAACTCACTGAAATTCATTCTGTATTTTGCCCACAAAGTTTTAAAGCTTTCATCCACAGTCATGAATTAAACTTATAACCAATGAGAGCCTCACACATTCAAGGATGTACTAAGCACTACAGGCCTCACAGAAACAGAGATCCTGTCTTGGAGGAGTTTTCCATTCCACATGGGAGAT----AAAGTGTT
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012106475v1     5000104 583 +   7169464 TACTCACATTTATGATAATGTTCAGAGATTCATCGTTGGGAAGGAAAATGCACACGCTGCGGCGGTCTTGCATGACTCTGTTGTTATGGAAATTCAATTTGTTCATTGTGTTTTGGGCTCTCT-GGTGGTCAGGGCTGGGCTCTGGGTCCTTGGCAATTCCTCAGGTTCCCAGCACTCCAAAGGCCAAGCTCGCCTCCTCATCACACGCCCTGCAGGAGAAGCATCATGGTGTTCGACTACGTAGGTTTCATAGCTGTGAAAAAGCC--AAAGGGGAGACTCCTGAAGAAAGGCGGTGAAGACTGTGAAAAGCAGGTTGGGAAGATGAACACAGCACTACTACTCCTGTGGGCACAGAGAC-------AGCATGTCTCCAGCCAGCACCACCTTGTTTAATACATGGGAACTCACTGAAATTCATTCTGTATTTTGCCCACAAAGTTTTAAAGCTTTCATCCACAGTCAACAATTAAACTTATAACCAATGAGAGCCTCACACATTCAAGGATGTACTAAGCACTACAGGCCTCACAGAAACAGAGAGCCTGTCTTGGAGGAATTTTCCATTCCACATGGGAGAT----AAAGGGTT
i manLeu1.NW_012106475v1    N 0 C 0
s colAng1.NW_012119265v1    12867995 580 -  12953760 TACTCACATTTATGATAATGTTCAGAGATTCATCGTTGGGAAGGAAAATGCACACGCTGCGGCGGTCTTGCATGACTCTGTTGTTATGGAAATTCAATTTGTTCATTGTGTTTTGGGCTCTCT-GGTGGTCAGGGCTGGGCTCTGGGTCCTTGGCAATTCCTCAGGTTCCCAGCACTCCAAA-GCCAAGCTCGCCTCCTCATCACACGCCCTGCAG---AAGCATCATGGTGTTCGACTACGTGGGTTTCATAGCTGTGAAAAAGCCAAAAAGGGGAGACTCCTGAAGAAAGGCGGTGAAGACTGTGAAAAGCAGGTTGGGAAGATGAACACAGCACTACTACTCCTGTAGGCACAGAGAC-------AGCATGTCTCCAGCCAGCACCACCATGTTTAATA-ATGGGAACTCACTGAAATTAATTCTGTATTTTGCCCACAAAGTTTTAAAGCTTTCATCCACAGTCAAGAATTAAACTTATAACCAATGAGAGCCTCACACATTCAAGGATGTACTAAGCACTACAGGCCTCACAGAAACAGAGATCCTGTCTTGGAGGAGTTTTCCGTTCCACATGGGAGAT----AAAGGGTT
i colAng1.NW_012119265v1    C 0 C 0
s calJac3.chr10             55885113 589 - 132174527 TACTCACATTTATGATAATGTTCAGAGATTTATCGTCGGGAAGGAAAATGCACACGCTGCGGCGGTCTTGCATGACTCTGTTGTTATGGAAATTCAATTTGTTCATTGTGTTTTGGGCTCTCT-GGTGGTCAGGGCTGGGCTCTAGGTCCTCGGCAATTCCTCAGGTTCCCAGCACACGAAA-GCCAAGCTTGCCTCCTCATCACATGCCCTGCAGGAGAAGCATCATGGTGCTTGACTACGTGGGTTTCATAGCTGTAGAAAAGCC--AAAGGGGAGACTCCTGAATAAAGGCGGTGAAGATTGTGAAGAAGGGGTCAGGAAGATAAGCACAGCACTACTATTCTTGTGGGCACAGGGACCAAGGATGGCATGTCTCCAGCCAGCGCCACCTTG----ATACATGAAAACTCACTTAAATTCATTCTGTATTTTGCCCACAAAGTTTTAAACCTTTCATCCACAGTCAGGAGTTAAACTTATAACCAATGAGAGCCTCTCACATTCAAGGATGTACTAAGTACTACAGGGCTCACAGAAACAGAGATGCTGTCTTGGAGGAGTTTTCAGTCCCACATGGGAGATAAAGAAAGGGTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378143           7268047 589 +  18744880 TACTCACATTTATGATGATGTTCAGAGATTTATCGTCGGGAAGGAAAATGCACACGCTGCGGCGGTCTTGCATGACTCTGTTGTTATGGAAATTCAATTTGTTCATTGTGTTTTGGGCTCTCT-GGTGGTCAGGGCTGGGCTCTAGGTCCTCGGCAATTTCTCAGGTTCCCAGCACTCAAAA-GCCAAACTTGCCTCCTCATCACACGCTCTGCAGGAGAAGCATCATGGTGCTTGACTACGTGGGTTTCATAGCTGTAGAAAAGCC--AAAGGGGAGACTCCTGAATAAAGGCGGTGAAGACTGTGAAGAGGGGGGTCAGGAAATAAGCACAGCACTACTATTCTTGTGGGCACAGGGACCAGGGATGGCACATCTCCAGCCAGCGCCACCTTG----ATACATGAGAACTCACTTAAATTCACTCTGTATTTTGCCCACAAAGTTTTAAACCTTTCATTCATAGTCAGGAGTTAAACTTAGAGCCAATGAGAGCCTCACATATTCAAGGATGTACTAAGTACTACAGGGCTCACAGAAACAGAGATCCTGTCTTGGAGGAGTTTCCAGTCCCACATGGGAGATAAAGAAAGTGTT
i saiBol1.JH378143          C 0 C 0
e panTro5.chr15              9626348   0 +  83230942 C

a score=1553773.000000
s hg38.chr15_KI270851v1_alt   234679 281 +    263054 TTGAACATGAAATGACAAAAACAACAGCAAGAAGAAAATTCTTGTCCTTTTTCATTACTATCAGACTCAAATAAATGTCTTGGCTCTTACATTACATTCATTCTTCAACCATTGTGGTCTGGCTTCCACTTCCTTCACTTCACCAACATGGCTCTGCCAAAGGAAGCCCGTGATCTCTAGGCCATCACTTTAATTGATCTCTCTACAACATTTATCCTGGTTGTTAAGCCCTCCTTACAACATTCTTCTCTCTTTGTTTTTATAGCTCCATCTCTCCTGCT
s panPan2.chr15             71422351 281 -  99763055 TTGAACATGAAATGACAAAAACAACAGCAAGAAGAAAATTCTTGTCCTTTTTCATTACTATCAAACTCAAATAAATGTCTTGGCTCTTACATTACATTCATTCTTCAACCATTGTGGTCTGGCTTCCACTTCCTTCACTTCACCAACATGGCTCTGCCAAAGGAAGCCCGTGATCTCTAGGCCATCACTTTAATTGATCTCTCTACAACATTTATCCTGGTCGTTAAGCCCTCCTTACAACATTCTTCTCTCTTTGTTTTTATAGCTCTGTCTCTCCTGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1569999 281 -   1649220 TTGAACATGAAATGACAAAAACAACAGCAAGAAGAAAATTCTCATCCTTTTTCATTACTATCAAACTCAAATAAATGTCTTGGCTCTTATATTACATTCATTCTTCAACCATTGTGGTCTGGCTTCCACTTCCTTCACTTCACCAACATGGCTCTGCCAAAGGAAGCCCATGATCTCTAGGCCATCACTTTAATTGATCTCTCTACAACATTTATCCTGGTTGTTAAGCCCTCCTTACAACATTCTTCTCTCTTTGTTTTTATAGCTCCATCTCTCCTGCT
i gorGor5.CYUI01015574v1    C 0 C 0
s rheMac8.chr7              55906741 277 - 169600520 TTGAACATGAAATGACAAAAACAATAGCAATAAGAAAATTCTCTTTCTCTTTCATTACTATCAAACTCAAATAAATGTCTTGGCTCTTACATTACATTCATTCTTCAACCATTGTGGTCTGGCCTCCACTTCCTTCACTTCACCAACATGGTTCTGCCAAAGGAAGCCCGTGATCTCTAGGCCATCACTTTAATTGATCTCTCTACGACATTTATCCTGGTTGTTAAGCCCTCCTTACAACATTCT----TCTTCGTTTTTATGGCTCTGTCTCTCCTGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              55980764 277 - 171882078 TTGAACATGAAATGACAAAAACAATAGCAATAAGAAAATTCTCTTTCTCTTTCATTACTATCAAACTCAAATAAATGTCTTGGCTCTTACATTACATTCATTCTTCAACCATTGTGGTCTGGCCTCCACTTCCTTCACTTCACCAACATGGTTCTGCCAAAGGAAGCCCGTGATCTCTAGGCCATCACTTTAATTGATCTCTCTACGACATTTATCCTGGTTGTTAAGCCCTCCTTACAACATTCT----TCTTAGTTTTTATGGCTCTGTCTCTCCTGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012019132v1     3564696 277 +  14689368 TTGAACATGAAATGACAAAAACAATAGCAATAAGAAAATTCTCTTTCTCTTTCATTACTATCAAACTCAAATAAATGTCTTGGCTCTTACATTACATTCATTCTTCAACCATTGTGGTCTGGCCTCCACTTCCTTCACTTCACCAACATGGTTCTGCCAAAGGAAGCCCGTGATCTCTAGGCCATCACTTTAATTGATCTCTCTACGACATTTATCCTGGTTGTTAAGCCCTCCTTACAACATTCT----TCTTCGTTTTTATGGCTCTGTCTCTCCTGCT
i macNem1.NW_012019132v1    C 0 C 0
s cerAty1.NW_012010133v1    10915680 277 -  13028613 TTGAACATGAAATGACAAAAACAACAGCAATAAGAAAATTCTCTTTCTCTTTCATTACTATCAAACTCAAATAAATGTCTTGGCTCTTACATTACATTCATTCTTCAACCATTGTGGTCTGGCCTCCACTTCCTTCACTTCACCAACATGGTTCTGCCAAAGGAAGCCCATGACCTCTAGGCCATCACTTTAATTGATCTCTCTATGACATTTATCCTGGTTGTTAAGCCCTCCTTACAACATTCT----TCTTAGTTTTTATGGCTCTGTCTCTCCTGCT
i cerAty1.NW_012010133v1    C 0 C 0
s chlSab2.chr24             56124829 277 -  84932903 TTGAACATGAAATGACAAAAACAACAGCAATAAGAAAATTCTCTTTCTCTTTCATTACTATCAAACTCAAATAAATGTCTTGGCTCTTACATTACATTCATTCTTCAACCATTGTGGTCTGGCCTCCACTTCCTTCACTTCACCAACATGGTTCTGCCAAAGGAAGCCCGTGATCTCTAGGCCATCACTTTAATTGATCTCTCTACGACATTTATCCTGGTTGTTAAGCCCTCCTTACAACATTCT----TCTTAGTTTTTATGGCTCTGTCTCTCCTGCT
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012106475v1     5000687 277 +   7169464 TTGAACATGAAATGACAAAAACAACAGCAATAAGAAAATTCTCTTTCTCTTTCATTACTATCAAACTCAAATAAATGTCTTGGCTCTTACATTACATTCATTCTTCAACCATTGTGGTCTGGCCTCCACTTCCTTCACTTCACCAACATGGTTCTGCCAAAGGAAGCCCGTGATCTCTAGGCCATCACTTTAATTGATCTCTCTACGACATTTATCCTGGTTGTTAAGCCCTCCTTACAACATTCT----TCTTAGTTTTTATGGCTCTGTCTCTCCTGCT
i manLeu1.NW_012106475v1    C 0 C 0
s colAng1.NW_012119265v1    12868575 281 -  12953760 TTGAACATGAAATGACAAAAACAACAGCAATAAGAAAATTCTCTTTCTCTTTCATTACTACCAAACTCAAATAAATGTCTTGGCTCTTACATTACATTCATTCTTCAACCATGGTGGTCTGGCTTCCACTTCCTTCACTTCACCAACATGGTTCTGCCAAATGAAGCCCGTGATCTCTAGGCCATCACTTTAATTGATCTCTCTACGACATTTATCCTGGTTGTTAAGCCCTCCTTACAACATTCTTCTCTCTTAGTTTTTATGGCTCTGTCTCTCCTGCT
i colAng1.NW_012119265v1    C 0 C 0
s calJac3.chr10             55885702 278 - 132174527 TTGAATATGAAATGACAAAAACAGCAGCAACAAGAAAATACTCTTTCTTTTTTATTACTATCAAACTCAAATAAATGTCTTGGCTctctcattacattcattcttcaaccattgtggtctggcttctacttccttcatttcaccaacatggctctgctaaaggaagtccgtgacctctagcccatcactttatttgatctctctacaacatttatcctg---gttaagccctctttataacattcttcttccttagtttttataacTCTTTCTCCCCTGAT
i calJac3.chr10             C 0 I 316
s saiBol1.JH378143           7268636 276 +  18744880 TTCAATATGAAATGACAAAAACAGCAGCAACGAGAAAATTCTCTTTCTTTTTTATTACTATCAAATTCAAATAAATGTCTTGGCTCTCCCATTACATTCATTCTTCAACCACTGTGGTCTGGCTTCCACTTCCTTCATTTTACCAACATGGCTCTGCTAAAGGAAGCCCGTGATCTCTAGCCCATCACTTTAATTGATCTCTCTTTGACATTTATCCTG---GTTAAGCCCTCCTTATAACATTCTTCTTCCTTAGTTTTTATAGCTCTTTCTCCC--GAt
i saiBol1.JH378143          C 0 I 307
e nomLeu3.chr6              44481742 308 - 121039945 I
e panTro5.chr15              9626348   0 +  83230942 C

a score=3513149.000000
s hg38.chr15_KI270851v1_alt   234960 662 +    263054 TCTTTAACTTGATAATGCATACTTGATTTTTCTATTTGTTATTTCATAAACCAATTAATACACA-GATAAAAT--GAC--TGTATATCAAACCATGTTTGTATAGAAAA----AATGGATTTTGGATGCCTCTCATATGTAATTAGTTCTATTAAACATATTAATTGTATTGTTTAATTTGTCAGGTTTTTG--AC----AG----AATTTTGTTTACAAGTAATAAAAATTTTATCTCCAATTTTCAATAATTACACCCATTATTTCTGTTTTATGTCTCATTGCATTGATGAGATCTTGCAGAATAATTTTAAAACAGTAGTGGGTATTTTCTGCTTTTAATGGGTATGTCTAGTATTTCATATATTGTTGCTTATAGAACACTATTCAACCAAGACATGTCAAGACTAGTTGTCTCTCAAACCATTAGTATTTATATTATTCCTTTCCAGCTACACTTGTAGGATGTAAAAGAC--CATTTCCAGGAATATGGAACTGTTTTACTAGGTGGAGGGTATATATAACCATATAATAGTCACAGAAACTACATTAATACTCACATAAATCAAAGCATAAATGACATAGAATCTTGGCAGATTTGCTTAAGGTTAAATGTATAACTCTTATCAGCAGGAGGTGAAAGAATATATTCTTAGATACTTGGCACATTTAGAAAATAT
s panPan2.chr15             71422632 670 -  99763055 TCTTTAACCTGATAATGCATACTTGATTTTTCCATTTATTATTTCATCAACCAATTAATACACA-GATAAAACAAGACTGTGTATATCAAACCATGTTTGTATAGAAAA----AATGGATTTTGGATGCCTCTCATATGTAATTAGTTCTATTAAACATATTAATTGTATTGTTTAATTTATCAggtttttg--acacagag----aattttgtttgcaagtaataaaaattttatctccaattttcaataattatacccattatttctgttttatgtctcattgcattggtgagatcttgcagaataattttagaacagtagtggGTATTTTCTACTTTTAATGGGTGTGTCTAGTATTTCATATATTGTTGCTTATAGAACTCTATTCAACCAAGACATGTCAAGACTAGTTGTCTCTCAAACCATTAGTATTTATATTATTCCTTTCCAGCTACATTTGTGGGATGTAAAAGAC--CATTTCCAGGAATATGGAACTGTTTTACTAGGTGGAGGGTATATATAACCATACAATAGTCACAGAAACTACATTAATACTCACATAAATCAAAGCATAAATGACATAGAATCTTGGCAGATTTGTTTAAGGTTAAATGTATAACTCTTATCAGCAGGAGGTGAAAGAATATATTCTTAGATACTTGGCACATTTAGAAAATAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1570280 658 -   1649220 TCTTTAACTTGATAATGCATACTTGATTTTTC--TTTATTATTTCATAAACCAATTAATACACA-GATAAAAT--GACTGTGTATATCAAACCATGTTTGTATAGAAAA----AATGGATTTTGGATG--TCTCATATGTAACTAGTTCTTTTAAACATATTAATTGTATTGTTTAATTTGTCAGGTTTTTG--AC----AG----AATTTTGTTTACAAGTAATACAAATTTTATCTCCAATTTTCAATAATTACACCCATTATTTCTGTTTTATGTCTCATTGCA-TGGTGAGATCTTGCAGAATAATTTTAAAACAGTAGTGGGTATTTTCT-CTTTTAATGGGTATGTCTAGTATTTCATATATTGTTGCTTATAGAACACTATTCAACCAAGACATGTCAAGACTAGTTGTCTCTCAAACCATTAGTATTTATATTATTCCTTTCCAGCTACATTTGTGGGATGTAAAAGACCACATTTCCAGGAATATGGAACTGTTTTACTAGGTGGAGGGTATATATAACCATACAATAGTCACAGAAACTACATTAATACTCACATAAATCAAAGCATAAATGAC--AGAATCTTGGCAGATTTGCTTAAGGTTAAATGTATAACTCTTATCAGCAGGAGGTGAAAGAATATCTTCTTAGATACTTGGCACATTTAGAAAATAT
i gorGor5.CYUI01015574v1    C 0 C 0
s rheMac8.chr7              55907018 661 - 169600520 TCTTTAATCTGATAATGCAAACTTGATTTTTCCATTTATTATTTCATAAACCAATTAATACACA-GATAAAACAAGACTGTGTGTATCAAACCATGTTTGTATAGAAAAGAGGGATGGATTTTGGATGCCTCTCATATCTAATTAGTTCTATTAAAC---------GTATTGTTTAACTTATCAGATTTTTG--AT----AT----AATTTTGTTTGCAAGTAACAGAAATTTTATCTCCAATTTTCAGTAATtacacccattatttctgttttatgtctcattgcattggtgagaccttgcagaataattttaaaacagtagtggGTGTTTTCTACCTTTAATGGGTATGTCTAGTATTTCATATATTGTTGCTAATAGAACACTATTCAACCAAAACATGTCAAGACTAGCTGTCTCTCAAACCATTAGTATTTGTATTATTCCTTTCCAGCTACATTTGTAGGATGTAAAAGAC--TATTTCTAGGAATATGGAACTGTTTTACTAGGTGGAAAGTATATATAACCATACAATTTTCATAGAAAACGCATTAATACTCACATAAATCAAAGCATAAATGAAATAGAATCTTGGCCAATTTGCTTAAGGTTAAATGTATAACTCTTATCAGCAGGAGGGGAAAGAATATATTCTTAGATAGTTGGCACACTGATAAAATAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              55981041 666 - 171882078 TCTTTAATCTGATAATGCAAACTTGATTTTTCCATTTATTATTTCATAAACCAATTAATACACA-GATAAAACAAGACTGTGTGTATCAAACCATGTTTGTATAGAAAAGAGGGATGGATTTTGGATGCCTCTCATATCTAATTAGTTCTATTAAACAT----ATTGTATTGTTTAACTTATCAGATTTTTG--AT----at----aattttgtttgcaagtaacagaaattttatctccaattttcagtaattacacccattatttctgttttatgtctcattgcattggtgagaccttgcagaataattttaaaacagtagtggGTGTTTTCTACCTTTAATGGGTATGTCTAGTATTTCATATATTGTTGCTAATAGAACACTATTCAACCAAAACATGTCAAGACTAGCTGTCTCTCAAACCATTAGTATTTATATTATTCCTTTCCAGCTACATTTGTAGGATGTAAAAGAC--TATTTCTAGGAATATGGAACTGTTTTACTAGGTGGAAAGTATATATAACCATACAATTTTCATAGAAAACGCATTAATACTCACATAAATCAAAGCATAAATGAAATAGAATCTTGGCCAATTTGCTTAAGGTTAAATGTATAACTCTTATCAGCAGGAGGGGAAAGAATATATTCTTAGATAGTTGGCACATTGATAAAATGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012019132v1     3564973 667 +  14689368 TCTTTAATCTGATCATGCAAACTTGATTTTTCCATTTATTATTTCATAAACCAATTAATACACAGGATAAAACAAGACTGTGTGTATCCAACCATGTTTGTATAGAAAAGAGGGATGGATTTTGGATGCCTCTCATATCTAATTAGTTCTATTAAACAT----ATTGTATTGTTTAACTTATCAGATTTTTG--AT----AT----AATTTTGTTTGCAAGTAACAGAAATTTTATCTCCAATTTTCAGTAATTACACCCATTACTTCTGTTTGATGTCTCATTGCATTGGTGAGACCTTGCAGAATAATTTTAAAACAGCAGTGGGTGTTTTCTACCTTTAATGGGTATGTCTAGTATTTCATATATTGTTGCTAATAGAACACTATTCAACCAAAACATGTCAAGACTCGCTGTCTCTCAAACCATTAGTATTTATATTATTCCTTTCCAGCTACATTTGTAGGATGTAAAAGAC--TATTTCTAGGAATATGGAACTGTTTTACTAGGTGGAAAGTATATATAACCATACAATTTTCATAGAAAACGCATTAATACTCACATAAATCAAAGCATAAATGAAACAGAATCTTGGCCAATTTGCTTAAGGTTAAATGTATAACTCTTATCAGCAGGAGGGGAAAGAATATATTCTTAGATAGTTGGCACATTGATAAAATAT
i macNem1.NW_012019132v1    C 0 C 0
s cerAty1.NW_012010133v1    10915957 670 -  13028613 TCTTTAATCTGATAATGCAAACTTGATTTTTCCATTTAATATTTCATAAACCAATTAATACACA-GATAAAACAAGACTGTGTATATCAAACCATGTTTGTATAGAAAAGAGGGATGGATTTTGGATGCCTCTCATATCTAATTAGTTCTATTAAACAT----ATTGTACTGTTTAACTTATCAGATTTTTG--AT----ACAGAGAATTTTGTTTGCAAGTAACAGAAATTTTATCTCCAATTTTCAGTAATTACACCCATTATTTCTGTTTTATGTCTCATTGCATTGGTGAGATCTTGCAGAATAATTTTAAAACAGTAGTGGGTGTTTTCTACCTTTAATGGGTATGTCTAGTATTTCATATATTGTTGCTAATAGAACACTATTCAACCAAAACTTGTCAAGACTAGCTGTCTCTCAAACCATTAGTATTTATATTATTCCTTTCCAGCTACATTTGTAGGATGTAAAAGAC--CATTTCTAGGAATATGGAACTGTGTTACTAGGTGGAAAGTATATACAACCATACAATTTTCATAGAAAATGCATTAATACTCACATAAATCAAAGCATAAATGAAATAGAATCTTGGCCAATTTGCTTAAGGTTAAACGTATAACTCTTATCAGCAGGAGGGGAAAGAACATATTCTTAGATAGTTGGCACATTGATAAAATAT
i cerAty1.NW_012010133v1    C 0 C 0
s chlSab2.chr24             56125106 670 -  84932903 TCTTTAATCTGATAATGCAAACTTGATTTTTCCATTTATTATTTCATAAACCAATTAATACACA-GATAAAACAAGACTGTGTATATCAAACCATGTTTGTATAGAAAAGAGGGATGGATTTTGGATGCCTCTCATATCTAATTAGTTCTATTAAACAT----ATTGTATTGTTTAACTTATCAgatttttg--at----atagagaattttgtttgcaagtaacagaaattttatctccaattttcagtaattacacccattatttctgttttatgtctcattgcattggtgagatcttgtagaataattttaaaacagtagtggGTATTTTCTACTTTTAATGGGTATGTCTAGGATTTCATATATTGTTGCTAATAGAACACTATTCAACCAAAACATGTCAAGACTAGCTGTCTCTCAAACCATTAGTATTTATATTATTCCTTTCCAGCTACATTTGTAGGATGTAAAAGAC--CATTTCTAGGAATATGGAACTGTTTTACTAGGTGGAAAGTATATATAACCATACAATTTTCATAGAAAACGCATTAACACTCACATAAATCAAAGCACAAATGAAATAGAATCTTGGCCGATTTGCTTAAGGTTAAATGTATAACTCTTATCAGCAGGAGGGGAAAGAATATATTCTTAGATAGTTGGCACATTGATAAAATAT
i chlSab2.chr24             C 0 C 0
s manLeu1.NW_012106475v1     5000964 661 +   7169464 TCTTTAATCTGATAATGCAAACTTGATTTTTCCATTTATTATTTCATAAACCAATTAATACACC-GATAAAACAAGACTGTGTATATCAAACCATCTTTGTATAGAAAAGAGGGATGGATTTTGGATGCCTCTCATGTCTAATTAGTTCTATTAAACAT----CTTGTATTGTTTAACTTATCAGATTTTTG--AT----AT----AATTTTGTTTGCAAGTAACAGAAATTTTATCTCCAATTTTCAGTAATTACACCCATTATTTCTGTTTTATGTCTCATTGCATTGGTGAGATCTTGCAGAATAATTTTAAAACAGTAGTGGGTGTTTTCTACCTTTAATGGATATGTCTAGTATTTCATATATTGTTGCTAATAGAACACTATTCAACCAAAACATGTCAAGACTAGCTGTCTCTCAAACCATTAGTATTTATATTATTCCTTTCCAGCTACATTTGTAGGATGTAAAAGAC--TATTTCTAGGAATATGGAACTGTTTCACTAGGTGGAAAGTATATATAACCATACAATTTTCATAGAAAACGCATTAATACTCACAT-----AAAGCATAAATGAAATAGAATCTTGGCCAATTTGCTTAAGGTTAAATGTATAACTCTTATCAGCAGGAGGGGAAAGAATATATTCTTAGATAGTTGGCACATTGATAAAATAT
i manLeu1.NW_012106475v1    C 0 C 0
s colAng1.NW_012119265v1    12868856 670 -  12953760 TCTTTAATCTGATAATGCAAACTTGATTTTTCCATTTATTATTTCATAAACCAATTAATACACA-GATAAAACAAGACTGTGTATATCAAATCATGTTTGTATAGAAAAGAGGGATGGATTTTGGATGCCTCTCATATCTAATTAGTTCTATTAAACAT----ATTGCATTGTTTAACTTATCAggtttttg--at----atagagaattttgtttgcaagtaatagaaattttatctccaattttcaataattacacccattatttctgttttatgtctcattgcattggtgagatcttgcagaataattttaaaacagtagtggGTGTTTTCTACCTTTAATGGGTGTGTCTAGTATTTCATATATTGTTGCTAATAGAACACTATTCAACCAAAATATGTCAAGACTAGTTGTCTCTCAAACCATTAGTATTTATATTATTTCTTTCCAGCTACATTTGTAGGATGTAAAAGAC--CATTTCCAGGAATATGGAACTGTTTTACTAGGTGGAGAGTATATATAACCATACAATTTTCATAGAAAATGCATTAATACTCACATAAATCAAAGCATAAATGAAATAGAATCTTGGCCGATTTGCTTAAGGTTAAATGTATAACTCTTATCAGCAGGAGGGGAAAGAATATATTCTTAGATAGTTGGCACATTTAGAAAATAT
i colAng1.NW_012119265v1    C 0 C 0
s calJac3.chr10             55886296 652 - 132174527 TCTTTAACCTGATAACGCAAACTTAATTTTTTCATTTATTATTTCATAAAC----TAATATATA-GATAAAACAAGACCGCATATATCAAATCATATTTGTACAGAAAAGTGTGATGGATTTTGGACGTCCCTCATATCTAATTAGTTCTATTAAACATATTAATTGTATTATTTGATTTCTCAGGTTTTTGACAG----AG----AATTTTGTTTGCAAGTAATAGAAATTTTATCTCCAATTTTCAATAATTACACCAGTTATTTCTGTTTTATGTCT----------------CCTTGCAGAATAATTTTAAAACAGAAGTGGGTATTTTCTACTTTTAATGGGTGTGTCTAGTGTTTCATGTACTTTTGCTAATAGAACACTGTTCAACCAAGACATGTCAAGTCTAGTTGCCTCTTAAACCATTAGTATTCATATTATTCCTTTCCAGCTACAACTGTAGGATGTAAAAGAC--CATTTCCAGGAATATGGAACTGTTTCACTAGGAGGAGAGTATATATAACTATACAATTTTCACAGCAAATACATTAATACTCACATAAATCAAAGCATAAATAAGATAGAATCTTGGCCAATTTGCTTAAGGTTAAATGTCTAACTCTCATCAGCGGGAGGGGAAAGAATATATTCTTAGATAGTTGGCACATTTAGAAAACAT
i calJac3.chr10             I 316 C 0
s saiBol1.JH378143           7269219 664 +  18744880 TCTTTAACCTGATAACGCAAACTTAATTTTTCCATTTATTATTTCATAAAC----GAACACACA-GATAAAACAAGACTGCATATATCAAATCATATTTGTATGAAGAAGTGTGATGGATTTTGGACATCCCTCCTATCTAATTAGTTCTATTAAACATATCAATTGTATTATCTGATTTCTCAGGTTTTTG--AG----AG----AATTTTGtttgcaagtaatagaaattttatctccaattttcaataattacacccattatttctgttttatgtctcactgcattggcaagaccttgcagaataattttaaaacagaagtggGTATTTTCTACTTTTAATGGGTTTGTCTAGTATTTCATATATTTTTGCTAATAGAACACTATTCAACCAAGACATGTCAAGAGTAGTTGTCCCTCAAACTATTAGTATTCATATTATTCCTTTCCAGCTACAACTGTAGGATGTAAAAGAC--CATTTCCAGGAACATGGAACTGTTTCACTAGGAGGAGGGTATATATAACTATACAATTTTCACAGAAAACACATTAATACTCACATAAATCAAAGCATAAATGAGATAGAATCTTGGCTAATTTGCTTAAGGTTAAATGTCTAACTCTTATCAGAGGGAAGGGAAAGAATATATTCTTAGATAGTTGGCACATTTAGAAAAC--
i saiBol1.JH378143          I 307 C 0
e nomLeu3.chr6              44481742 308 - 121039945 I
e panTro5.chr15              9626348   0 +  83230942 C

a score=75199.000000
s hg38.chr15_KI270851v1_alt   235622 17 +    263054 AATCTAATATTCTTTTT
s panPan2.chr15             71423302 17 -  99763055 AATCTAATATTCTTTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1570938 17 -   1649220 AATCTAATATTCTTTTT
i gorGor5.CYUI01015574v1    C 0 C 0
s rheMac8.chr7              55907679 17 - 169600520 ACTCTAGTATTCTTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              55981707 17 - 171882078 ACTCTAGTATTCTTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012019132v1     3565640 17 +  14689368 ACTCTAGTATTCTTTTT
i macNem1.NW_012019132v1    C 0 C 0
s cerAty1.NW_012010133v1    10916627 17 -  13028613 ACTCTAGTATTCTTTTT
i cerAty1.NW_012010133v1    C 0 C 0
s manLeu1.NW_012106475v1     5001625 17 +   7169464 ACTCTAGTATTCTTTTT
i manLeu1.NW_012106475v1    C 0 C 0
s colAng1.NW_012119265v1    12869526 17 -  12953760 AATCTAGTATTCTTTTT
i colAng1.NW_012119265v1    C 0 C 0
s calJac3.chr10             55886948 17 - 132174527 AATCTAGTATTCTTTTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378143           7269883 17 +  18744880 AATCTAGTATTCTTTTT
i saiBol1.JH378143          C 0 C 0
e nomLeu3.chr6              44481742 308 - 121039945 I
e panTro5.chr15              9626348  0 +  83230942 C
e chlSab2.chr24             56125776  0 -  84932903 C

a score=15494.000000
s hg38.chr15_KI270851v1_alt   235639 57 +    263054 AAAGAATAggccgggcacggtggctcacacctgtaatcccagcactttgggaggcca
s panPan2.chr15             71423319 57 -  99763055 AAAGAACAggccgggcacggtggctcacgcctgtaatcccagcactttgggaggcca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1570955 57 -   1649220 AAAGAACAggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccg
i gorGor5.CYUI01015574v1    C 0 C 0
e nomLeu3.chr6              44481742 308 - 121039945 I
e panTro5.chr15              9626348  0 +  83230942 C
e colAng1.NW_012119265v1    12869543  0 -  12953760 C
e manLeu1.NW_012106475v1     5001642  0 +   7169464 C
e cerAty1.NW_012010133v1    10916644  0 -  13028613 C
e macNem1.NW_012019132v1     3565657  0 +  14689368 C
e rheMac8.chr7              55907696  0 - 169600520 C
e chlSab2.chr24             56125776  0 -  84932903 C
e saiBol1.JH378143           7269900  0 +  18744880 C
e calJac3.chr10             55886965  0 - 132174527 C
e macFas5.chr7              55981724  0 - 171882078 C

a score=127573.000000
s hg38.chr15_KI270851v1_alt   235696 248 +    263054 aggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctaccaaaaatacaaaaaattagctgggcgtggtggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaacggcgtgaacccgggaggtggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgaaagagcgagactctgtctcaaaaaaaaaaaaaaaa
s panTro5.chr15              9626348 248 +  83230942 aggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcgcggtggcgggcgcctgtagtccgagctactcaggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcgcgccactgcactccggcctgggcgaaagagcgagactctgtctcaaaaaaaaaaaaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71423376 248 -  99763055 aggcgggcggatcacgaggtcaggagatccagaccatcctggataacacagtgaaaccccgtctctactaaaaatacaaaaaattatctgggcatggtggcgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccgggaggtggagcttgcagtgagccgagatcacactactgcactccggcctgggcaaaagagagagactccatctcaaaaataaataaataa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1571012 245 -   1649220 aggc-ggcggatcgcgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaat--actgggcgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcgcgccactgcactccggcctgggcgaaagagcgagactctgtctcaaaaaaaaaaaaaaaa
i gorGor5.CYUI01015574v1    C 0 C 0
e nomLeu3.chr6              44481742 308 - 121039945 I
e colAng1.NW_012119265v1    12869543   0 -  12953760 C
e manLeu1.NW_012106475v1     5001642   0 +   7169464 C
e cerAty1.NW_012010133v1    10916644   0 -  13028613 C
e macNem1.NW_012019132v1     3565657   0 +  14689368 C
e rheMac8.chr7              55907696   0 - 169600520 C
e chlSab2.chr24             56125776   0 -  84932903 C
e saiBol1.JH378143           7269900   0 +  18744880 C
e calJac3.chr10             55886965   0 - 132174527 C
e macFas5.chr7              55981724   0 - 171882078 C

a score=44883.000000
s hg38.chr15_KI270851v1_alt   235944 13 +    263054 aaa---------------gaataaataa
s panTro5.chr15              9626596 13 +  83230942 aga---------------gaataaataa
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71423624 28 -  99763055 ataaataaataaataaataaataaataa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1571257 20 -   1649220 aaa--------aaaaaaaGAATAAATAA
i gorGor5.CYUI01015574v1    C 0 C 0
s rheMac8.chr7              55907696 13 - 169600520 ---------------AAAGAATAAATAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              55981724 13 - 171882078 ---------------AAAGAATAAATAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012019132v1     3565657 13 +  14689368 ---------------AAAGAATAAATAA
i macNem1.NW_012019132v1    C 0 C 0
s cerAty1.NW_012010133v1    10916644 13 -  13028613 ---------------AAAGAATAAATAA
i cerAty1.NW_012010133v1    C 0 C 0
s manLeu1.NW_012106475v1     5001642 13 +   7169464 ---------------AAAGAATAAATAA
i manLeu1.NW_012106475v1    C 0 C 0
s colAng1.NW_012119265v1    12869543 13 -  12953760 ---------------AAAGAATAAATAA
i colAng1.NW_012119265v1    C 0 C 0
s calJac3.chr10             55886965 13 - 132174527 ---------------AAAGTATAAATAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378143           7269900 13 +  18744880 ---------------AAAGTATAAATAA
i saiBol1.JH378143          C 0 C 0
e nomLeu3.chr6              44481742 308 - 121039945 I
e chlSab2.chr24             56125776  0 -  84932903 C

a score=3263732.000000
s hg38.chr15_KI270851v1_alt   235957 525 +    263054 aACATCATCTACAAGGGAATTACTTGAAATTAAAACAAATGGTAGTCATATATATGGT--ACTTCATTATTAGGAAGGTGGCTAAAAGCCCATTTAGACATATTCTGCTTTTCTTAAGGAATAATGATCGTTTCATGTTAGGTTATAGCCAGCACAGCACCTCGT--GGGGTCATCAGAGGCCTGTGCTATCATTCTCACTAGGAGGGATGGTTAACCCATG---TGTTCTAGGACCACAAACTATGCCCCAATCTACTCATCCATCTAGAAAAAAAGGCATGCTTTTAGTTCAACAATTCcaaagcatcagttggaggaccagtgttggctgcatcagaatcacctgggtgtttgtaa-taaatacagaatcctgagcAGGT------------ATTCTGGCATTTCTGTTCATACAGAATCTCCAGGGTCAGGGCCAAGTATGTCTGATGTGTAGCAACAGACGGAAACCATCACTTTAGTTAGCAGAAGGAAGGCACTGAGCAGAGGGTTGAATATAATACATTGGAAAAATATCTT-AAAGA------
s panTro5.chr15              9626609 525 +  83230942 aACATCATCTACAAGGGAATTACTTGAAATTAAAACAAATGGTAATCATATATATGGT--ACTTCATTATTAGGAAGGTGGCTAAAAGCCCATTTAGACATATTCTGCTTTTCTTAAGGAATAATGATCGTTTCATGTTAGGTTATAGCCAGCACAGCACCTCGT--GGGGTCATCAGAGGCCTGTGCTATCATTCTCACTAGGAGGGATGGTTAACCCATG---tgttctaggaccacaaactatgccccaatctactcatccatctagaaaaaaaggcatgcttttagtTCAACAATTCCAAAGCATCAGTTGGAGGACCAGTGTTGgctgcatcagaatcacttgggtgtttgtaa-taaatacagaatcctgagcaggt------------attctggcatttctcttcatacagaatctccagggtcagggccaagtatgtctgATGTGTAGCAACAGACGGAAACCATCACTTTAGTTAGCAGAAGGAAGGCACTGAGCAGAGGGTTGAATATAATACATTGGAAAAATATCTT-AAAGA------
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71423652 523 -  99763055 aACCTCATCTACAAGGGAATTACTTGAAATTAAAACAAATGGTAATCATATATATGGT--ACTTCATTATTAGGAAGGTGGCTAAAAGCCCAGTTAGACATATTCTGCTTTTCTTAAGGAATAATGATCATTTCATGTTAGGTTATAGCCAGCACAGCACCTCGT--GGGGTCATGGGAGGCCTGTGCTATCATTCTCACTAGGAGGGATGGTTAACCCATG---tgttctaggaccacaaactatgccccaatctactcatccatctag-aaaaaaggcatgcttttagtTCAACAATTCcaaagcatcagttggaggaccagtgttggctgcatcagaatcacctgggtgtttgtaa-taaatacagaatcctgagcAGGT------------ATTCTGGCATTTCTATTCATACAGAATCTCCAGGGTCAGGGCCAGGTATTTCTGATGTGTAGCAACAGATGGAAACCATCACTTTAGTTAGCAGAAGGAAGGCACTGAGCAGAGGGTTGAATATAATACATTGG-AAGATATCTT-AAAGA------
i panPan2.chr15             C 0 M 934
s gorGor5.CYUI01015574v1     1571277 524 -   1649220 AACATCATCTACAAGGGAATTACTTGAAATTAAAACAAATGGTAGTCATATATATGGT--ACTTCATTATTAGGAAGGTGGCTAAAAGCCCATTTAGACATATTCTGCTTTTCTTAAAGAATAATAATAGTTTCATGTTGGGTTATAGCCAGCACAGCACCTCGT--GGGGTCATGGGAGGCCTGTGCTATCATTCTCACTAGGA-GGATGGTTAACCCGTG---TGTTCTAGGACCACAAACTATGCCCCAATCTACTCATCCATCTAGAAAAAAAGGCATGCTTTTAGTTCAACAATTCcaaagcatcagttggaggaccagtgttggctgcatcagaatcacctgggtgtttgtaa-taaatacagaatcctgagcAGGT------------ATTCTGGCATTTCTATTCATACAGAATCTCCAGGGTCAGGGCCAGGTATGTCTGATGTGTAGCAACAGATGGAAACCATCACTTTAGTTAGCAGAAGGAAGGCACTGAGCAGAGGGTTGAATATAATACATTGGAAAAATATCTT-AAAGA------
i gorGor5.CYUI01015574v1    C 0 C 0
s rheMac8.chr7              55907709 520 - 169600520 AACATCATCCACAAGGTAATTACTCAAAACTAAAACAAACGGTAATCATATATATGGT--ACTTCATTATTAGGAAGGTGGCTAAAAGCCCAATTAGAAGTATTCTGCTTTTCTTAAAGAATA---ATTGTTTCATGTTAGGTTATAGCCAGTACATCACCTCGTGGGGGGTCATCGGAGGCCTGTGCTATCGTTCTCACTAGGATGGATGGTTAATCCAtgtgttgttctaggaccacaaactacgccccaatctactcatccatctagggaaaaatgcatgcttttatgtcaACAATTCcaaagcatcagttggaggaccagcattggctgcatcagaatcacctgggtgtttgtaa-taaatacagaatcctgagcaggt------------attccagcatttctattcatacagaatttccagggtcagggccaggtatttCTGATGTGTAGCAACAGATGGAAAC---CACT----TTAGCAGAAGGAAGGCACTGAGTAGAGGGTTGAATATAATACATTGGAAAAATATCTT-AAGGA------
i rheMac8.chr7              C 0 I 6
s macFas5.chr7              55981737 520 - 171882078 AACATCATCCACAAGGTAATTACTCGAAACTAAAACAAACGGTAATCATATATATGGT--ACTTCATTATTAGGAAGGTGGCTAAAAGCCCAATTAGAAGTATTCTGCTTTTCTTAAAGAATA---ATTGTTTCATGTTAGGTTATAGCCAGTACATCACCTCGTGGGGGGTCATCGGACGCCTGTGCTATCGTTCTCACTAGGATGGATGGTTAATCCATGTGTTGTTCTAGGACCACAAACTACGCCCCAATCTACTCATCCATCTAGGGAAAAATGCATGCTTTTATGTCAACAATTCcaaagcatcagttggaggaccagcattggctgcatcagaatcacctgggtgtttgtaa-taaatacagaatcCTGAGCAGGT------------ATTCCAGCATTTCTATTCATACAGAATTTCCAGGGTCAGGGCCAGGTATTTCTGATGTGTAGCAACAGATGGAAAC---CACT----TTAGCAGAAGGAAGGCACTGAGTAGAGGGTTGAATATAATACATTGGAAAAATATCTT-AAGGA------
i macFas5.chr7              C 0 I 6
s macNem1.NW_012019132v1     3565670 520 +  14689368 AACATCATCCACAAGGTAATTACTCGAAACTAAAACAAACGGTAATCATATATATGGT--ACTTCATTATTAGGAAGGTGGCTAAAAGCCCAATTAGAAGTATTCTGCTTTTCTTAAAGAATA---GTTGTTTCATGTTAGGTTATAGCCAGTACATCACCTCGTGGGGGGTCATCGGAGGCCGGTGCTATCGTTCTCACTAGGATGGATGGTTAATCCAtgtgttgttctaggaccacaaactacgccccaatctactcatccatctagggaaaaatgcatgcttttatgtcaACAATTCCAAAGCATCAGTTGGAggaccagcattggctgcatcagaatcacctgggtgtttgtaa-taaatacagaatcCTGAGCAGGT------------ATTCCAGCATTTCTATTCATACAGAATTTCCAGGGTCAGGGccaggtatttctgatgtgtagcaacagatggaaac---cact----TTAGCAGAAGGAAGGCACTGAGTAGAGGGTTGAATATAATACATTGGAAAAATATCTT-AAGGA------
i macNem1.NW_012019132v1    C 0 I 6
s cerAty1.NW_012010133v1    10916657 524 -  13028613 AACATCATCCACAAGGGAATTACTCGAAACTAAAACAAACGGTAATCATATATACGGT--ACTTCATTATTAGGAAGGTGGCTAAAAGCCCAATTAGAAGTATTCTGCTTTTCTTAAAGAATA---ATTGTTTCATGTTAGGTTATAGCCAGTACATCACCTCGTGGGGGGTCATCGGAGGCCTATGCTATCGTTCTCACTAGGATGGATGGTTAATCCAtgtgttgttctaggaccacaaactacgccccaatctactcatccatctagggaaaaatgcatgcttttatgtcaACAATTCCAAAGCATCAGTTGGAggaccagcactggctgcatcagaatcacctgggtgtttgtaa-taaatacagaatcCTGAGCAGGT------------ATTCCAGCATTTCTATTCACACAGAATTTCCAGGGTCAGGGccaggtatttctgatgtgtagcaacagatggaaac---cactTTAGTTAGCAGAAGGAAGGCACTGAGTAGAGGGTTGAATATAATACATTGGAAAAATATCTT-AAGGA------
i cerAty1.NW_012010133v1    C 0 I 6
s chlSab2.chr24             56125776 524 -  84932903 AACATCATCCACAAGGGAATTACTCGAAACTAAAACAAACGGTAATCATATATATGGT--ACTTCATTATTAGGAAGGTGGCTAAAAGCCCAATTAGAAGTATTCTGCTTTTCTTAAAGAATA---ATTGTTTCATGTTAGGTTATAGCCAGTACATCACCTCGTGGGGGGTCATCAGAGGCCTGTGCTATCGTTCTCACTAGGATGGATGGTTAATCCATGTGTTGTTCTAGGACCACAAACTACGCCCCAATCTACTCATCCATCTAGGGAAAAATGCATGCTTTTATTTCAACAATTCcaaagcatcagttggaggaccagcatcggctgcataagaatcacctgggtgtttgtaa-taaatacagaatcCTGAGCAGGT------------ATTCCAGCATTTCTATTCATACAGAATTTCCAGGGTCAGGGCCAGGTATTTCTGATGTGTAGCAACACATGGAAAC---CACTTTAGTTAGCAGAAGGAAGGCACTGAGTAGAGGGTTGAATATAATACATTGGAAAAATATCTT-AAGGA------
i chlSab2.chr24             C 0 I 6
s manLeu1.NW_012106475v1     5001655 523 +   7169464 AACATCATCCACAAGGGAATTACTCGAAACTAAAACAAACGGTAATCATATATATGGT--ACTTCATTATTAGGAAGGTGGCTAAAAGCCCAATTAGAAGTATTCTGCTTTTCTTAAAGAATA---ATTGTTTCATGTTAGGTTATAGCCAGTACATCACCTCGTGGGGGGTCATCAGAGGCCTGTGCTATCGTTCTCACTAGGATGGATGGTTAATCCAtgtgttgttctaggaccacaaactacg-cccaatctactcatccatctagggaaaaatgcatgcttttatgtcaACAATTCCAAAGCATCAGTTGGAggaccagcattggctgcatcagaatcacctgggtgtttgtaa-taaatacagaatcCTGAGCAGGT------------ATTCCAGCATTTCTATTCATACAGAATTTCCAGGGTCAGGGccaggtatttctgatgtgtagcaacagatggaaac---cactTTAGTTAGCAGAAGGAAGGCACTGAGTAGAGGGTTGAATATAATACATTGGAAAAATATCTT-AAGGA------
i manLeu1.NW_012106475v1    C 0 I 6
s colAng1.NW_012119265v1    12869556 524 -  12953760 AACATCATCCACAAGGGAATTACTCGAAACTAAAACAAATGGCAATCATATACATGGT--ACTTCATTATTAGGAAGGTGGCTAAAAGCCCAGTTAGAAATATTCTGCTTTTCTTAAAGAATA---ATTGTTTCATGTTAGGTTACAGCCACTACATCACCTCGTGGGGGGTCATCGGAGGCCTGTACTATCGTTCTCACTAGGATGGATGgttaactcatgtgttgttctaggaccacaaactacgccccaatctactcatccatctaggaaaaaatgcatgcttttATTTCAACAATTCcaaagcatcagttggaggaccagcactggctgcatcagaagcacctgggtgtttgtaa-taaatacagaatcCTGAGCAGGT------------ATTCCAGCATTTCTATTCATACAGAATTTCCAGGGTCAGGGCCAGGTATTTCTGATGTGTAGCAACAGATAGAAAC---CACTTTAGTTAGCAGAAGGAAGGCATTGAGTAGAGGGTTGAATATAATACATTGGAAAAATATCTT-AAGGA------
i colAng1.NW_012119265v1    C 0 I 6
s calJac3.chr10             55886978 534 - 132174527 AACATCATTTATAAAAGAATCACTCAAAACAAAAACAAATGGTAATCACATATATGGTACACTTCATTATTAGGAAGGTGGCTAAAAGCCAATTTAGAAGTATTCTGCTTTTCTTAAAGAATAATAATCATTTTATGTTAGCTTATAGCCAGCACATCACCTTGT--GGGGTAATCGGAGGCCTGTGCTAT-GTTCTCACTAGGATGAATGGTTAACCCATA---TGTTCTATGACCACAAACTACACTCTAATCTACTCATTCATCT-GGAAAAAATGCATGCTTTTAGTTTACCAATTCCAAAGCATCAGTTGGAGGACCAGTATTGGCTGCATCAGA----------TGTTTGTAATTAAATACAGAATCCCGAGAAGGTATAGAAATAGAAATTCTGGCATTTTTACTCATACAGAATCTCCAAGGTCAGGGCCAGTTATTTCTGATGTGTAGCAACAGATGAAAACCATCACTTTAGTTAGCAGAAGGAAGGCACTGAGCAGAGGGTTGCATATAATACACTGGAAAAATATCTT-AAAGATAAAGA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378143           7269913 544 +  18744880 AACATCATTTATAAAAGAATCACTCAAAACAAAAACAAATGGTAATCACATATGTGGTACACTTCATTATTAGGAAGGTGGCTAAAAGCCCATTTAGAAGTATTCTGCTTTTCTTAAAGAATAATAATCGTTTTATGTTAGCTTATAGCCAGCACATCACCTTGT--GGGGTAATCGGAGGCCTGTGCTAT-GTTCTCACTAGCATAAATGATTAACGCATA---TGTTCTATGATCACAAACTACACCCTAATCTACTCATTCATCT--ACAAAAATGCATGCTTTTAGTTTAACAATTCCAAAGCATCAGTTGGAggaccagtattggctgcatcagaatcacctgagtgtttgtaattaaatacagaatcctgagcaggtacagaaatagaaattctggCATTTCTACTCATACAGAATCTCCAGGGTCAGGGTCAGGTATTTCTGATGTGTAGGAACAGATGGAAACCATCACTTTAGTTGGCGGAAGGAAGGCACTGAGCAGAGGGTTGAATATAATCCACTGGAAAAATATCTTAAAAGATAAAGA
i saiBol1.JH378143          C 0 C 0
e nomLeu3.chr6              44481742 308 - 121039945 I

a score=756506.000000
s hg38.chr15_KI270851v1_alt   236482 176 +    263054 ATTGGGAAAAAGTAATATATGTGA---ATATCACATCATCATTATAATAGGAAAAAACAAGGTCCTCAACATTGTCAAAGGTATAAATTCCTAAAACAGGTCAAATTCGTGTTCTCAAAACATTTTCCTGAAAAATGTTACTAGGTGGTATAGGGATaaataggtttgcaaagtactgt
s panTro5.chr15              9627134 176 +  83230942 ATTGGGAAAAAGTAATATATGTGA---ATATCACATCATCATTATAATAGGAAAAAACAAGGTCCTCAACATTGTCAAAGGTATAAATTCCTAAAACAGGTCAAATTCGTGTTCTCAAAACATTTTCCTGAAAAATGTTACTAGGTGGTATAGGGATaaataggtttgcaaagtactgt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1571801 176 -   1649220 ATTGGAAAAAAGTAATATATGTGA---ATATCACATCATCATTATAATAGGAAAAAACAAGGTCCTCAACATTGTCAAAGGTATAAATTCCTAAAACAGGTCAAATTCGTGTTCTCAAAACATTTTCCTGAAAAATGTTACTAGGTGGTATAGGGATaaataggtttgcaaagtactgt
i gorGor5.CYUI01015574v1    C 0 C 0
s rheMac8.chr7              55908235 172 - 169600520 ATTGGGAAAAAGTAATATATGTGA---ATATCA---CATCATTATAATAGG-AAAAACAAGGTCCTCAACATTGTCAAAGGTATAAATTCCTACAACAGGTCAAATTCGTGTGCTCAAAACATTTTCCTGAAAAATGTTACTAGGCGGTATAGGGATACGtaggtttgcaaaatactgt
i rheMac8.chr7              I 6 C 0
s macFas5.chr7              55982263 172 - 171882078 ATTGGGAAAAAGTAATATATGTGA---ATATCA---CATCATTATAATAGG-AAAAACAAGGTCCTCAACATTGTCAAAGGTATAAATTCCTACAACAGGTCAAATTCGTGTGCTCAAAACATTTTCCTGAAAAATGTTACTAGGCGGTATAGGGATACGtaggtttgcaaaatactgt
i macFas5.chr7              I 6 C 0
s macNem1.NW_012019132v1     3566196 172 +  14689368 ATTGGGAAAAAGTAATATATGTGA---ATATCA---CATCATTATAACAGG-AAAAACAAGGTCCTCAACATTGTCAAAGGTATAAATTCCTACAACAGGTCAAATTCGTGTGCTCAAAACATTTTCCTGAAAAATGTTACTAGGCGGTATAGGGATACGtaggtttgcaaaatactgt
i macNem1.NW_012019132v1    I 6 C 0
s cerAty1.NW_012010133v1    10917187 172 -  13028613 ATTGGGAAAAAGTAATATATGTGA---ATATCA---CATCATTATAATAGG-AAAAACAAGGTCCTCAACATTGTCAAAGGTATAAATTCCTACAACAGGTCAAATTCGTGTGCTCAAAACATTTTCCTGAAAAATGTTACTAGGCGGTATAGGGATACGtaggtttgcaaagtactgt
i cerAty1.NW_012010133v1    I 6 C 0
s chlSab2.chr24             56126306 169 -  84932903 ATTGGGAAAAAGTAATATATGTGA---ATATCA------CATTATAATAGG-AAAAACAAGGTCCTCAACATTGTCAAAGGTATAAATTCCTACAACAGGTCAAATTCGTGTGCTCAAAACATTTTCCTGAAAAATGTTACCAGGCGGTATAGGGATACGtaggtttgcaaagtactgt
i chlSab2.chr24             I 6 C 0
s manLeu1.NW_012106475v1     5002184 172 +   7169464 ATTGGGAAAAAGTAATATATGTGA---ATATCA---CATCATTATAATAGG-AAAAACAAGGTCCTCAACATTGTCAAAGGTATAAATTCCTACAACAGGTCAAATTCATGTGCTCAAAACATTTTCCTGAAAAATGTTACTAGGCGGTATAGGGATACGtaggtttgcaaagtactgt
i manLeu1.NW_012106475v1    I 6 C 0
s colAng1.NW_012119265v1    12870086 172 -  12953760 ATTGGGAAAAAGTAATATATGTGA---ATATCA---CATCATTATAATAGG-AAAAACAAGGTCCTCAACATTGTCAAAGGTATAAATTCCTACAATAGGTCAAATTCGTGTGCTCAAAACATTTTCCTGAAAAATGTTACTAGGCGGTATAGGGATACataggtttgcaaagtactgt
i colAng1.NW_012119265v1    I 6 C 0
s calJac3.chr10             55887512 115 - 132174527 ATTAGGAAAAAGTAATACATGTGAATGATATTA---CATCATCATAATAGG---AAAAAAAGTCCTCAACATTATCAAAGGTATAAATTTCTACAA---gtcaaa-------------------------------------------------------taggtttgcaaagtactgt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378143           7270457  84 +  18744880 ATTAGGAAGAAGTAGTATATGTGAATGATATCA---CATCATCATAATAGg--aaaaaaaagtcc-----------------------------------tcaaa-------------------------------------------------------taggtttgcaaagtactgt
i saiBol1.JH378143          C 0 C 0
e nomLeu3.chr6              44481742 308 - 121039945 I
e panPan2.chr15             71424175 934 -  99763055 M

a score=14582847.000000
s hg38.chr15_KI270851v1_alt   236658 2324 +    263054 accctctatatatcttgtctcagaaattcagaaagtgttaaagactctgagaagtcctgcaggcaacttcttatatttaatgcagtatatctcaaactcacttgagcacacaatacttttttcccccgaggcatatctattaaggtcctatagaacaatattcTTAGGCATACCATTTAGAGATACAATTCTAAAATGATT---TTATCAAATATTATATTTCATGGCAAAGTTTTTCCCTATATATTGACATATTCCAACACTTAGTCTTCTTTTTTGCAATATAAATCTTTTCAAGAGGAAATTATAAGCATTGATTAAAT--GCATCTTAAATTCAAAACCTTAAATAATATTCATCCCAGTATAATTCTTCTTATTGAAATCTATACTTCAAATTGAGTTAGTCCTATAATTTTTCACTTCTAATTAAACCAATTAAAGCGGGGTATGTCTACTGACCTACTTTCCAGAATT--TAAAAAA-TA---AACTAGGAAAAAACATCTTCTGAGCTCTGGGATGTTTCCAGAGCTTCATTAAAATAACTTGAAATTTTCATTTGGGTACAGTTTTTGCTTATTTTATGGTTCAAATATGCAGCACAAAAGATGACTGGAAGAGGATTATTGAAGCAAATTTAATAAAAGCAGAGTCTATATGAGGCAGTGCTGCTTC---ATTGCTGCTTTTTCTGCTTTGAGGATGGCAAACTAGAAAAGCCCTT--------AGATTAAGTTTTTACTTTACCTAAGACAGCATTAAAGCTGATTAAAAGGTTCCACTGAAATGGCAAAATGGCCATATCTCTAATAAGCGCCAGTATAAAAC--TTAATCTTAAATTGGGCAGTCCTGGGGAAAAGAATTAGATTTAATTTATACCAATTTGAATTATAGAAGTCAGACTCATAGCAGCCGTTGGCTACTTATTCTGTGTGCTAAACTAAATCTCAACTCAGTCCCAGGAGGACACATTTCCTA---CTACAGGGCAACCCTTTTCTGCCCAGTGATCTTAGGTTCGATTATCTATGAAGGGTAGACCATGTGGTAGTAACATATTTTCCAGGGAAC-----AAAACAAATCAGTTTTAATAGTGATCAAACCCCACCCAGCCTCTTTATGTATTAATACCCAACTTACAAAACC-GTATGTTAAGCTGTACAATTCCTCCACTGGAAATTTAAGCGCACATTATTATGAGTTCCTTATTTCCTGATAAGTCCCAATGGTTACAAAATTACTCAGTTTCTTTGAAGAATCAGGAAG---CCACCACCCATGGGCACTCAATACTGATTGTCATTTTTAACAAATTGTGGGAAATAAGCTTTAAAACTGGGTCACTACCCCTAaaagtatgcagtttagttataatatatcaatactgatttgttagttatgacaaatataccataatcatgtaagatgttagcaacaagggaaactgggtgcctgtgtggtacacagaaactctctataccacctttgcaactgttttctaaatataaaactat-gctaatattttttta--aatttaaaaattaaaaGTAGGTCACCAGAAATTTCCTACCCACATAATATAGTCTCATTTTGAATGTAGGCAAAGGAGGATTCTCAATTCTAGGACTGTCTCTCT-AAAAAAGTAAAAAGCTGGTAATTTGATAAGATTACTGCAAGAGAAGCATGACTAAGTAGGCA-TATATCAACAGTCAATATGGTACCTTTATTACCTAACAAAAACAAGGCAAAAATTTATCTTGGAAAAC-TGGATTGCAGAGAACCCTATCTTCTAATTTAATCATCACACACTTATATAGCTCATGTTACACACACAGTACGGTAATATTTATTTGCTGAAAAGCAGAATACAAAAGCATTAGATACTCCCCATCCACCTATGAGTTCACCATCTAGTTAAGTACACGTCACTGCCAAGAAGCTTAAAATGATAGTATTGTCCCTGATTTCTAAGAGCACACATACGCTGACGGGCAACTCTCATGCCAACCTCAAAGGAAGGTAGAATGGATAACAGCATTAAGTCTACAAATACTGTGCTGTGAACACTGTAGCTAAGACCATTCTGGAATAAACAGTGTATCATCTTTAATGTATAGTATCCTATCCCAAAAGTGATATCAAAATGTCTTTAGTAAAATGAGTTCTGT-----TCTTCTTCATTCTttcattcagcacctactgtctgccaagtgttgctgtatatgctgagcacactaacagcactaacaa---aaataccctgctctaatagaaacagacaataagcatatgacgtagatggtgttatgtactatgaagagaaataaGCCCAGAGCAGAT--GAGAGTTGATGGAG
s panTro5.chr15              9627310 2310 +  83230942 accctctatatatcttgtctcagaaattcagaaagtgttaaagactctgagaagtcctgcaggcaacttcttatatttaatgcagtatatctcaaactcacttgagcacacaatacttttttcccccaaggcatatctattaaggtcctatagaacaatattcTTAGGCAAACCATTTAGAGATACAATTCTAAAATGATT---TTATCAAATATTATATTTCATGGCAAAGTTTTTCCCTATATATTGACATATTCCAACACTTAGTCTTCCTTTTTGCAATATAAATCTTTTCAAGAGGAAATTATAAGCATTGATTAAAT--GCATCTTAAATTCAAACCCTTAAATAATATTCATCCCAGTATAATTCTTCTTATTGAAATCTATACTTCAAATTGGGTTAGTCCTATAATTTTTCACTTCTAATTAAACCAATTAAAGCAGGGTATGTCTACTGACCTACTTTCCAGAATT--TAAAAAAATA---TACTAGGAAAAAATACCTTCTGAGCTGTGGGATGTTTCCAGAGCTTCATTAAAATAACTTGAAATTTTCATTTGGGTACAATTTTTGCTTATTTTATGGTTCAAATATGCAGCACAAAAGATGACTGGAAGAGGATTATTGAAGCAAATTTAATAAAAGCAGAGTCTATATGAGGCAGTGCTGCTTC---ATTGCTGCTTTTTCTGCTTTGAGGATGGCAAACTAGAAAAGCCCTT--------AGATTAAGTTTTTACTTTACCTAAGACAGCATTAAAGCTGATTAAAAGGTTCCACTGAAATGGCAAAATGGCCATATCTCTAATAAGCGCCAGTATAAAAC--TTAATCTTAAATTGGGCAGTCCTGGGGAAAAGAATTAGATTTAATTTATACCAATTTGAATTCTAGAAGTCAGTCTCATAGCAGCCATTGGCTACTTATTCTGTGTGCTAAACTAAATCTCAACTCAGTCCCAGGAGGACACATTTCCTA---CTACAGGGCAACCCTTTTCTGCCCAGTGATATTAGGCTCGATTGTCTATGAAGGGTAGACCATATGGTAGTAACATATTTTCCAGGGAAC-----AAAACAAATCAGTTTTAATAGTGATCAAACCCCACCCAGCCTCTTTAT----TAATACCCAACTTACAAAAAC-ATATGTTAAGCTGTACAATTCCTCCACTGGAAATTTAAGCGCCCATTATTATGAGTTCCTTATTTCCTGATAAGTCCCAATGGTTACAAAATTACTCAGTTTCTTTGAAGAATCAGGAAG---CCACCACCCATGGGCACTCAATACTGATTGTCATTTTTAACAAATTGTGGGAAATAGGCTTTAAAAGTGGGTCACTACCCCTAaaagtatgcagtttagttataatatatcaatactgatttgttagttgtgacaaatataccataatcatgtaagatgttagcaacaggggaaactgggtgcctgtgtggtacacagaaactctctataccacctttgc----------taaatataaaactat-gctaaTTTTTTTTTA--A-TTTAAAAATTAAAAGTAGGTCACCAGAAATTTCCTACCCACATAATATAGTCTCATTTTGAATGTAGGCAAAGGAGGAGTCTCAATTCTAGGACTGTCTCTCT-AAAAAAGTAAAAAGCTGGTAATTTGATAAGATTACTGCAAGAGAAGCATGACTAAGTAGGCA-TATATCAACAGTCAATATGGTACCTTTATTATCTAACAAAAACAAGGCAAAAATTTATCTTGGAAAAC-TGGATCGCAGAGAACCCTATCTTCTAATTTAATCATCACACACTTATATAGCTCATGTTACACACACAGTATGGTAATATTTATTTGCTGAAAAGCAGAATACGAAAGCATTAGATACTCCCCCTCCACCTATGAGTTCACCATCTAGTTAAGTACACGTCACTGCCAAGAAGCTTAAAATGATAGTATTGTCCCTGATTTCTAAGAGCACACGTACGCTGACGGGCAACTCTCATGCCAACCTCAAAGGAAGGTAGAATGGATAACAGCGTTAAGTATACAAATACTGTGCTGTGAACACTGTAGCTAAGACCATTCTGGAATAAACACTGTATCATCTTTAATGTATAGTATCCTATCCCAAAAGTGATATCAAAATATCTTTAGTAAAATGAGTTCTGT-----TCTTCTTCATTCTttcattcagcacctactgtctgccaagtgttgctgtatatgctgagcacactaacagcactaacaa---aaataccctgctctaatagaaacagacaataagcatatgacgtagatggtgctatgtactatgaagaggaataagcccagagcagat--gagagttgatggag
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71425114 2326 -  99763055 ACCCTctatatatcttgtctcagaaattcagaaagtgttaaagactctgagaagtcctgcaggcaacttcttatatttaatgcagtatatctcaaactcacttgagcacacaatactttttt-ccccaaagcatatctattaaggtcctatagaacaatattcTTAAGCATACCATTTAGAGATACAATTCTAAAATGATT---TTATCAAATATTAAATTTCATGGCAAAGTTTTTCCCTGTATATTGATATATTCCAACACTTAGTCTTCCTTTTTGCAATATAAATCTTTTCAAGAGGAAATTATAAGCGTGGATTAAAT--GCATCTTAAATTCAAACCCTTAAATAATATTCATCCCAGTATAATTCTTCTTATTTAAATCTATACTTCAAATTGAGTTAGTCCTATAATTTTTCACTTCTAATTAAACCAATTAAAGCAGGGTATGTCTACTGACCTACTTTCCAGAATT--TAAAAAA-TA---AACTAGGAAAAAATATCTTCTGAGCTGTGGGATGTTTCCAGAGCTTCATTAAAATAACCAGAAATTTTCACTTGGGTACAATTTTTGCTTATTTTATGGTTCAAATATGCAGCACAAAAGATGACTGGAAGAGGATTATTGAAGCAAATTTAACAAAAGCAGAGTCTATATGAGGCAGTGCTGCTTC---ACTGCTGCTTTTTCTGCTTTGAGGATGGCAAACCAGAAAAGCCCTCAAAGAGAGAGATTAAGTTTTCACTTTACCTAAGACAGCATTAAAGCTGATTAAAAGGTTCCACTGAAATGGCAAAATGGCCATATCTCTAATAAGCGCCAGTTTAAAAC--TTAATCTTAAATTGGGCAGTTCTGGGGAAAAGAATTAGATTAAATTTATACCAATTTGAATTCTAGAAGTCAGTCTCATAGCAGCCATTGGCTACTTATTCTGTGTGCTAAACTAAAGCTCAACTCAGTCCCAGGAGGACACATTTCCTA---CTACAGGGCAACTCTTTTCCACCCAGTGATCTTAGGATTGATTATCTATGAAGGGTAGACCATGTGGTAGTAACATATTTTCCAGGGAAC-----AAAACAAATCAGTATTAATAGTGATCAAACCCCACCCAGCCTCTTTAT----TAATACCCAACTTACGAAAAC-ATATTTTAAGCTGTACAATTCCTCCACTGGAAATTTAAGCTCACATTATTATGAGTTCCTTATTTCCTGATAAGTCCCAATGGTTACAAAATTACTCAGTTTCTTTGAAGAATCAGGAAG---CCACCACCCATGGGCATTCAATACTGATTGTCATTTTTAACAAATTGTGGGAAATAAGCTTTAAAACTGGGTCACTACCCCTAaaagtatgcagtttagttataatatatcaatactgatttgttagttgtgacaaatataccataatcgtgtaagatgttagcaacaggggaaactgggtgcctgtgtggtacacagaaactctctataccacctttgcaactgttttctaaatctaaaactatagctaaaatTTTTTTT--AATT--AAAATTAAAAGTAGGTCACCAGAAATTTCCTACCCACGTAATATAGTCT-ATTTTGAATGTAGGCAAAAGAGGATTCTCAATTCTAGGACTGTCTCTCTAAAAAAAGTAAAAAGCTGGTAATTTGATAAGATTACTGCAAGAGAAGCATGACTAAGTAGGCA-TATATCAACAGTCAATATGGTACCTTTATTATCTAAGAAAAACAAGGCAAAAATTTATCTTGGAAAAC-TGGATTGCAGAGAACCCTATCTTCTAATTTAATCATCACACACTTATATAGCTCATGTTACACACACAGTATGGTAATATTTATTTGCTGAAAAGCAGAATACGAAAGCATTAGATACTCCCCCTCCACCTATGAGTTCACCATCTAGTTAAGTACACGTCACTGCCAAGAAGCTTAAAATGATAGTATTGTCCCTGATTTCTAAGAGCACACATAGGCTGATGGGCAACTCTCATGCCAACCTCAAAGGAAGGTAGAATGGATAACAGCGTTAAGTATACAAATACTGTGCTGTGAACACTGTAGCTAAGACCATTCTGGAATAAACACTGTATCATCTTTAATGTATAGTATCCTATCCCAAAAGTGATATCAAAATATCTTTAGTAAAATGAGTTCTGT-----TCTTCTTCATTCTttcattcagcacctactgtctgccaagtgttgctgtatatgctgagcacactaacagcactaacaa---aaataccctgctctaatagaaacagacaataagcatatgacgtagatggtgctatgtactatgaagagaaataagcccagagtagat--gagagttgatggag
i panPan2.chr15             M 934 C 0
s gorGor5.CYUI01015574v1     1571977 2325 -   1649220 atcctatatatatcttgtctcagaaattcagaaagtgttaaagactctgagaagtcctgcaggcaacttcttatatttaatgcagtatatctcaaactcacttgagcacacaatacttttttcccccaaggcatatctattaaggtcctatagaacaatattcTTAGGCATACCATTTAGAGATACAATTCTAAAATGATT---TTATCAAATATTATATTTCATGGCAAAGTTTTTCCCTATATATTGATATATTCCAACACTTAGTCTTCCTTTTTGCAATATAAATCTTTTCAAGAGGAAATTATAAGCATTGATTAAAT--GCATCTTAAATTCAAACCCTTAAATAATATTCATCCCAGTATAATTCTTCTTATTGAAATCTATACTTCAAATTGAGTTAGTCCTATAATTTTTCACTTCTAATTAAACCAATTAAAGCAGGGTATGTCTACTGACCTACTTTCCAGAATT--TAAAAAA-TA---AACTAGGAAAAAATATCTTCTGAGCTGTGGGATGTTTCCAGAGCTTCATTAAAATAACTTGAAATTTTCATTTGGGTGCAATTTTTGCTTATTTTATGGTTCAAATATGCAGCACAAAAGATGACTGGAAGAGGCTTATTGAAGCAAATTTAATAAAAGCAGAGTCTATATGAGGCAGTGCTGCTTC---ATTGCTGCTTTTTCTGCTTTGAGGATGGCAAACTAGAAAAGCCCTT--------AGATTAAGTTTTTGCTTTACCTAAGACAGCATTAAAGCTGATTAAAAGGTTCCACTGAAATGGCAAAATGGCCATATCTCTAATAAGTGCCAGTATAAAAC--TTAATCTTAAATTGGGCAGTCCTGGGGCAAAGAATTAGATTAAATTTATACCAATTTGAATTATAGAAGTCAGTCTCATAGCAGCCATTGCCTACTTATTCTGTGTGCTGAACTAAATCTCAACTCAGTCCCAGGAGGACACATTTCCTA---CTACAGGGCAACCCTTTTCTGCCCAGTGATCTTAGGCTCGATTATCTATCAA-GGTAGACCATGTGGTAGTAACATATTTTCCAGGGAAC-----AAAACAAATCAGTTTTAATAGTGATCAAACCCCACCCAGCCTCTTTATGTATTAATACCCAACTTACAAAACC-GTATGTTAAGCTGTACAATTCCTCCACTGGAAATTTAAGTGCACATTATGATGAGTTCCTTATTTCCTGATAAGTCCCAATGGTTACAAATTCACTCAGTTTCTTTGAAGAATCAGGAAG---CCACCACCCATGGGCATTCAATACTGATTGTCATTTTTAACAAATTGTGGGAAATAAGCTTTAAAACTGGGTCACTACCCCTAaaagtatgcagtttagttataatatatcaatactgatttgttagttgtgacaaatataccataatcgtgtaagatgttagcaacaggggaaactgggtgcctgtgtggtacacagaaactctctataccacctttgcaactgttttctaaatctaaaactat-gctaatattttttta--aatttaaaaattaaaaGTAGGTCACCAGAAATTTCCTACCCATGTAATATAGTCTCATTTTGAATGTAGGCAAAGGAGGATTCTCAAGTCTAGGACTGTCTCTCT-AAAAAAGTAAAAAGCTGGTAATTTGATAAGATTACTGCAAGAGAAGCATGACTAAGTAGGCA-TATATCAACAGTCAATATGGTACCTTTATTACCTAACAAAAACAAGGCAAAAATTTATCTTGGAAAAC-TGGATTGCAGAGAACCCTATCTTCTAATTTAATCATCACACACTTATATAGCTCATGTTATACACACAGTACGGTAATATTTATTTGCTGAAAAGCAGAATACAAAAGCATTAGATACTCCCCCTCCACCTATGAGTTCACCATCTAGTTAAGTACACGTCACTGCCAAGAAGCTTAAAATGATAGTATTGTCCCTGATTTCTAAGAGCACACGTACACTGACGGGCAACTCTCATGCCAACCTCAAAGGAAGGTAGAATGGATAACAGCGTTAAGTATACAAATACTGTGCTTTGAACACTGTAGCTAAGACCATTCTGGAATAAACACTGTATCATCTTTAATGTATAGTATCCTATCCCAAAAGTGATATCAAAATGTCTTTAGTAAAATGAGTTCTGT-----TCTTCTTCATTCTttcattcagcacctactgtctgccaagtgttgctgtatatgctgagcacactaacagcactaacaa---aaataccctgctctaatagaaacagacaataagcatatgacgtagatggtgctatgtactatgaagagaaataagcccagagtagatgagagagttgatggag
i gorGor5.CYUI01015574v1    C 0 C 0
s rheMac8.chr7              55908407 2327 - 169600520 accctatatatgtcctctcttagaaattcagaaagtgttaaaggctctgagaagtcctgcaggcaacttcttatatttaatgcattgtttctcaaacttacataagcacacaatacttttc--ccccaaggcatatctattgaggtcctacagaacaatattcttaggcataccattgagagatacAATTCTAAAATTATT---TCATCAAATATTATATTTCATGGCAAAA-TTTTCCCCATATAATGATATATTCTAATACGTAGTCTTCCTTTTTGCAATATAAATCTTTACAAGAAGAAATTACAAGCTTTGATTGAAT--GCATCTTAAATTCAAACCCTTAAATAATATTCATCCCAGTATAATTCTTCTTATTTAAATCTATACTTCAAATTGAGTTAGTCCTATAATTTTTCACTTCTAATTAAACCAATTACAGCAGGGTATGTCTACTGACCTACTTTCCAGAA-T--TAAAAAA-TA---AACTAGGAAAAAATATCTTCTGAGCTGTGGGATGTTTCCAGAGCTTCATTAAAATAACTTGAAATTTTCATTTGGGTACAATTTTTGCTTCTTTTATGGTTCAAATATGCAGCACAAAAGATGACTGGAAGAGGATTATTGAAGCAAATTTAATAAAAGCAGAGTCTACATGAAGCAGCGCTGCTTC---ACTGCTACTCTTTCTGCTTTGAGGATGGCAAACTAGAAAAGCGCTTAAAGAGAGAGATTAAGTTTTTACTTTACCCAAGACAGCATTAAAGCTGATTAAAAGGCTCCACTGAAATGGTAAAATGGCCATATCTCTAATATGTGCCAGTATAAAACTTTTAATCTAAAATTGGGCAGTCCTGGGGAAAAGA-----ATTAAATTTATACCAATTTGAATTCTAGAAGTCAACCTCATGGCAGCCATTGGCTACTTATTCTGTGTCCTACACTAAATCTCAACTCAGTCCCAGGAGGACACATTTCCTACTACTACAGAGCAACCCTTTTCTGCCCAATGATCTTAGGATCAATTATCTATGAAGAGTAGACCATGTGGTAGTAACATATTTGCCAGGGAACAAAAAAAAAAAAATCAGTTTTAATAATGATCAAATTCCACCCA-CCTCTTTATTTATTAATACCCAACTTACAAAAACAATACGTTAAGCTATACAATTTCCCC-CTGGAACTTTAAGCGCACATTATTATAAGTTCCTTGTTTCCTGATAAGTCCCAATGGTTACAAAATTACTCAGTTTCTTTTAAGAATCAGGAAGCCACCACCACCCATGGGCATTCAATACTGATTGTCATTTTTAACAAATTCTGGGAAAAAAACTTTAAAACTGGGTCACTACCCCTAaaaggatgcagtttagttataatgtatcaatactgatttgttagttgtgacaaatataccataatcctgtaagatgttagcaacaggggaaactgggtgcctgtgtggtacacagaaactctctataccacctttgcaactgtttcctaaatctaaaactat-GGCAATTTTTTTTTA--AATTTTAAAATTAAAAGTAGGTCACCAGAAATTTCCTACCCACATAATACAGTGTCATTTTGAACGTAGGCAAAGCAGGATTCTCAATTCTAGGACTGTCTCTCT-AAAAAAGTAAAAAGCTGGTAATTTGATAAGATGACTGTAAGCGAAGCATGACTAAGTAGGCA-TGTATCAACAGTCAATATGGTATCTTTATCACCTAACAAAAACAAGGCAAAAATTTATCTTAGAAAACTTGTATTGCAGAGAATCCTATCTTCCAATTTAATCATCACACATTCATATAGCTCGTGTTACACACACAGTACGGTAATATTTATTTGCTGAAAAGCAGAATACAAAAGTATTACATATTCCCCCTCCACCTATGAGTTCACCATCTAGTTAAGGACATATCACTGCCAAGAAGATTAAAATGATAGTACTGTTCCTGATTTCTAAGAGCACACATACTCTGATGGTCAACTCTCATGCCAACCTCAAAGGAAGATATAATGGATAACAGTATTAAGTATACAAATACTGTGCTATGAATACTGTAGCTAAGATCATTCTGGAATAAACAGTGTATCATTTTTAATGTATAGTGTCCTATCCCAAAAGTAGTATCAAAATGTCTTTAGTAAAATGAGT--AGT-----TTTTGTTCATTCTttcattcaacatctactgtctgccaaatgttgctgtatgtgccgagta---------cactaacaa---aaatatcctgctctaatagaaacagccaataagcacatgatgtagatggtgatatgtactatgaagaaaaataagcccagagtagatgatagagttgatggag
i rheMac8.chr7              C 0 N 0
s macFas5.chr7              55982435 2332 - 171882078 accctatatatgtcctctcttagaaattcagaaagtgttaaaggctctgagaagtcctgcaggcaacttcttatatttaatgcattgtttctcaaacttacataagcacacaatatttttc--ccccaaggcatatctattgaggtcctacagaacaatattcttaggcataccattgagagatacAATTCTAAAATTATT---TCATCAAATATTATATTTCATGGCAAAA-TTTTCCCCATATAATGATATATTCTAATACGTAGTCTTCCTTTTTGCAATATAAATCTTTACAAGAAGAAATTATAAGCTTTGATTGAAT--GCATCTTAAATTCAAACCCTTAAATAATATTCATCCCAGTATAATTCTTCTTATTTAAATCTATACTTCAAATTGAGTTAGTCCTATAATTTTTCACTTCTAATTAAACCAATTACAGCAGGGTATGTCTACTGACCTACTTTCCAGAA-T--TAAAAAA-TA---AACTAGGAAAAAATATCTTCTGAGCTGTGGGATGTTTCCAGAGCTTCATTAAAATAACTTGAAATTTTCATTTGGGTACAATTTTTGCTTCTTTTATGGTTCAAATATGCAGCACAAAAGATGACTGGAAGAGGATTATTGAAGCAAATTTAATAAAAGCAGAGTCTACATGAAGCAGCGCTGCTTC---ACTGCTACTCTTTCTGCTTTGAGGATGGCAAACTAGAAAAGCGCTTAAAGAGAGAGATTAAGTTTTTACTTTACCCAAGACAGCATTAAAGCTGATTAAAAGGCTCCACTGAAATGGTAAAATGGCCATATCTCTAATATGTGCCAGTATAAAACTTTTAATCTAAAATTGGGCAGTCCTGGGGAAAAGAATTAGATTAAATTTATACCAATTTGAATTCTAGAAGTCAACCTCATGGCAGCCATTGGCTACTTATTCTGTGTCCTACACTAAATCTCAACTCAGTCCCAGGAGGACACATTTCCTACTACTACAGAGCAACCCTTTTCTGCCCAATGATCTTAGGATCAATTATCTATGAAGAGTAGACCATGTGGTAGTAACATATTTGCCAGGGAACAAAAAAAAAAAAATCAGTTTTAATAATGATCAAATTCCACCCA-CCTCTTTATTTATTAATACCCAACTTACAAAAACAATACGTTAAGCTATACAATTTCCCC-CTGGAACTTTAAGCGCACATTATTATAAGTTCCTTGTTTCCTGATAAGTCCCAATGGTTACAAAATTACTCAGTTTCTTTTAAGAATCAGGAAGCCACCACCACCCATGGGCATTCAATACTGATTGTCATTTTTAACAAATTCTGGGAAAAAAACTTTAAAACTGGGTCACTACCCCTAaaaggatgcagtttagttataatgtatcaatactgatttgttagttgtgacaaatataccataatcatgtaagatgttagcaacaggggaaactgggtgcctgtgtggtacacagaaactctctataccacctttgcaactgttttctaaatctaaaactat-GGCAATTTTTTTTTT--AATTTTAAAATTAAAAGTAGGTCACCAGAAATTTCCTACCCACATAATACAGTCTCATTTTGAACGTAGGCAAAGCAGGATTCTCAATTCTAGGACTGTCTCTCT-AAAAAAGTAAAAAGCTGGTAATTTGATAAGATGACTGTAAGCGAAGCATGACTAAGTAGGCA-TGTATCAACAGTCAATATGGTATCTTTATCACCTAACAAAATCAAGGCAAAAATTTATCTTAGAAAACTTGTATTGCAGAGAATCCTATCTTCCAATTTAATCATCACACATTCATATAGCTCGTGTTACACACACAGTACGGTAATATTTATTTGCTGAAAAGCAGAATACAAAAGTATTACATATTCCCCCTCCACCTATGAGTTCACCATCTAGTTAAGGACATATCACTGCCAAGAAGATTAAAATGATAGTACTGTCCCTGATTTCTAAGAGCACACATACTCTGATGGTCAACTCTCATGCCAACCTCAAAGGAAGATATAATGGATAACAGTATTAAGTATACAAATACTGTGCTATGAATACTGTAGCTAAGATCATTCTGGAATAAACAGTGTATCATTTTTAATGTATAGTGTCCTATCCCAAAAGTAGTATCAAAATGTCTTTAGTAAAATGAGT--AGT-----TTTTGTTCATTCTTTCATTCAACACCTACCGTCTGCCAAATGTTGCTGTATGTGCCGAGTA---------CGCTAACAA---AAATATCCTGCTCTAATAGAAACAGCCAATAAGCACATGatgtagatggtgatatgtactatgaagaaaaataagcccagagtagatgatagagttgatggag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012019132v1     3566368 2330 +  14689368 accctatatatgtcctctcttagaaattcagaaagtgttaaaggctctgagaagtcctgcaggcaacttcttatatttactgcattgtttctcaaacttacataagcacacaatacttttc--ccccaaggcatatctattgaggtcctacagaacaatattcTTAGGCATACCATTGAGAGATACAATTCTAAAATTATT---TCATCAAATATTATATTTCATGGCAAAA-TTTTCCCCATATAATGATATATTCTAATACGTAGTCTTCCTTTTTGCAATATAAATCTTTACAAGAAGAAATTATAAGCTTTGATTGAAT--GCATCTTAAATTCAAACCCTTAAATAACATTCATCCCAGTATAA---TTCTTATTTAAATCTATACTTCAAATTGAGTTAGTCCTATAATTTTTCACTTCTAATTAAACCAATTACAGCAGGGTATGTCTACTGACCTACTTTCCAGAA-T--TAAAAAA-TA---AACTAGGAAAAAATATCTTCTGAGCTGTGGGATGTTTCCAGAGCTTCATTAAAATAACTTGAAATTTTCATTTGGGTACAATTTTTGCTTCTTTTATGGTTCAAATATGCAGCACAAAAGATGACTGGAAGAGGATTATTGAAGCAAATTTAATAAAAGCAGAGTCTACATGAAGCAGCGCTGCTTC---ACTGCTACTCTTTCTGCTTTGAGGATGGCAAACTAGAAAAGCGCTTAAAGAGAGAGATTAAGTTTTTACTTTACCCAAGACAGCATTAAAGCTGATTAAAAGGCTCCACTGAAATGGTAAAATGGCCATATCTCTAATATGTGCCAGTATAAAACTTTTAATCTAAAATTGGGCAGTCCTGGGGAAAAGAATTAGATTAAATTTATACCAATTTGAATTCTAGAAGTCAACCTCATGGCAGCCATTGGCTACTTATTCTGTGTCCTACACTAAATCTCAACTCAGTCCCAGGAGGACACATTTCCTACTACTACAGAGCAACCCTTTTCTGCCCAATGATCTTAGGATCAATTATCTATGAAGAGTAGACCATGTGGTAGTAACATATTTGCCAGGGAACAAAAAAAAAAAAATCAGTTTTAATAATGATCAAATTCCACCCA-CCTCTTTATTTATTAATACCCAACTTACAAAAACAATACGTTAAGCTATACAATTTCCCC-CTGGAACTTTAAGCGCACATTATTATAAGTTCCTTGTTTCCTGATAAGTCCCAATGGTTACAAAATTACTCAGTTTCTTTTAAGAATCAGGAAGTCACCACCACCCATGGGCATTCAATACTGATTGTCATTTTTAACAAATTCTGGGAAAAAAACTTTAAAACTGGGTCACTACCCCTAaaaggatgcagtttagttataatgtatcaatactgatttgttagttgtgacaaatataccataatcatgtaagatgttagcaacaggggaaactgggtgcctgtgtggtacacagaaactctctataccacctttgcaactgttttctaaatctaaaactat-GGCAATTTTTTTTTT-AAATTTTAAAATTAAAAGTAGGTCACCAGAAATTTCCTACCCACATAATACAGTCTCATTTTGAACGTAGGCAAAGCAGGATTCTCAATTCTAGGACTGTCTCTCT-AAAAAAGTAAAAAGCTGGTAATTTGATAAGATGACTGTAAGCGAAGCATGACTAAGTAGGCA-TGTATCAACAGTCAATATGGTATCTTTATCACCTAACAAAAACAAGGCAAAAATTTATCTTAGAAAACTTGTATTGCAGAGAATCCTATCTTCCAATTTAATCATCACACATTCATATAGCTCGTGTTACACACACAGTACGGTAACATTTATTTGCTGAAAAGCAGAATACAAAAGTATTACATATTCCCCCTCCACCTATGAGTTCACCATCTAGTTAAGGACATATCACTGCCAAGAAGATTAAAATGATAGTACTGTCCCTGATTTCTAAGAGCACACACACTCTGATGGTCAACTCTCATGCCAACCTCAAAGGAAGATATAATGGATAACAGTATTAAGTATACAAATACTGTGCTATGAATACTGTAGCTAAGATCATTCTGGAATAAACAGTGTATTATTTTTAATGTATAGTGTCCTATCCCAAAAGTAGTATCAAAATGTCTTTAGTAAAATGAGT--AGT-----TTTTGTTCATTCTttcattcaacacctactgtctgccaaatgttgctgtatgtgccgagta---------cgctaacaa---aaatatcctgctctaatagaaacagccaataagcacatgatgtagatggtgatatgtactatgaagaaaaataagcccagagtagatgatagagttgatggag
i macNem1.NW_012019132v1    C 0 N 0
s cerAty1.NW_012010133v1    10917359 2330 -  13028613 accctatatatgtcctctcttagaaattcagaaagtgttaaaggctctgagaagtcctgcaggcaacttcttatatttaatgcattatttctcaaacttacataagcacacaatacttttc--ccccaaggcatatctattgaggtcctacagaacaatattcTTAGGCATACCATTGAGAGATACAATTCTAAAATTATT---TTATCAAATATTATATTTCATGGCAAAA-TTTTCCCCATATAATGATATATTCCAATACATAGTCTTCCTTTTTGCAATATAAATCTTTACAAGAAGAAATTATAAGCTTTGATTGAAT--GCATCTTAAATTCAAACCCTTAAATAATATTCATCCCAGTATAATTCTTCTTATTTAAATCTATACTTCAAATTGAGTTAGTCCTACAATTTTTCACTTCTAATTAAACCAATTACAGCAGGGTATGTCTACTGACCTACTTTCCAGAATT--TAAAAAA-TA---AACTAGGAAAAAGTATCTTCTGAGCTGTGGGATGTTTCCAGAGCTTCATTAAAATAACTTGAAATTTTCATTTGGGTACAATTTTTGCTTCTTTTATGGTTCAAATATGCAGCACAAAAGATGACTGGAAGAGGATTATTGAAGCAAATTTAATAAAAGCAGAGTCTATATGAAGCAGCGCTGCTTC---ACTGCTACTCTTTCTGCTTTGAGGATGGCAAACTAGAAAAGCGCTTAAAGAGAGAGATTAAGTTTTTACTTTACCCAAGACAGCATTAAAGCTGATTAAAAGGCTCCACTGAAATGGTAAAATGGCCATATCTCTAATATGTGCCAGTATAAAACTTTTAATCTAAAATTGGGCAGTCCTGGGGAAAAGAATTAGATTAAATTTATACCAATTTGAATTCTAGAAGTCAACCTCATGGCAGCCATTGGCTACTTATTGTGTGTCCTACACTAAATCTCAACTCAGTCCCAGGAGGACACATTTCCTACTACTACAGAGCAACCCTTTTCTGCCCAATGATCTTAGGATCAATTATCTATGAAGAGTAGACCATGTGGTAGTAACATATTTGCCAGGGAAC-AAAAAAAAAAAATCAGTTTTAATAATGATCAAATTCCACCCA-CCTCTTTATTTATTAATACCCAACTTACAAAAACAATACGTTAA-CTATACAATTTCCCC-CTGGAACTTTAAGCGCACATTATTATAAGTTCCTTGTTTCCTGATAAGTCCCAATGGTTACAAAATTACTCAGTTTCTTTTAAGAATCAGGAAG---CCACCACCCATGGGCATTCAATACTCATTGTCATTTTTAACAAATTCTGGGAAAAAAACTTCAAAACTGGGTCACTACCCCTAaaaggatgcagtttagttataatgtatcaatactgatttgttagttgtgacaaatataccataatcatgtaagatgttagcaacaggggaaactgggtgcctgtgtggtacacagaaactctctataccacctttgcaactgttttctaaatctaaaactat-GGTAATTTTTTTTTTTTAATTTTAAAATTAAAAGTAGGTCACCAGAAATTTCCTACCCACATAATACAGTCTCATTTTGAATGTAGGTAAAGCAGGATTCTCAATTCTAGGACTGTCTCTCT-AAAAAAGTAAAAAGCTGGTAATTTGATAAGATGACTGTAAGCGAAGCATGACTAAGTAGGCA-TGTATCAACAGTCAATATGGTATCTTTATCACCTAACAAAAACAAGGCAAAAATTTATCTTAGAAAACTTGGATTGCAGAGAATCCTATCTTCTAATTTAATCATCACACATTCATATAGCTCATGTTACACACACAGTACGGTAATATTTATTTGCTGAAAAGCAGAATACAAAAGTATTACATATTCCCCCTCCACCTATGAGTTCACCATCTAGTTAAGGACATATCACTGCCAAGAAGATTAAAATGATAGTATTGTCCCTGATTTCCAAGAGCACACATACTCTGATGGGCAACTCTCATGTCAACCTCAAAGGAAGATATAATGGATAACAGTATTAAGTATACAAATACTGTGCTATGAATACTGTAGCTAAGATCATTCTGGAATAAACAGTGTATCATTTTTAATGTATAGTATCCTATCCCAAAAGTAGTATCAAAATGTCTTTAGTAAAATGAGT--AGT-----TTTTGTTCATTCTttcattcaacacctactgtctgccaaatgctgctgtatgtgcggagta---------cgctaacaa---aaatatcctgctctaatagaaacagacaataagcacatgatgtagatggtgatatgtactatgaagaaaaataagcccagagtagatgatagagttgatggag
i cerAty1.NW_012010133v1    C 0 N 0
s chlSab2.chr24             56126475 2327 -  84932903 accctatatatgtcctttcttagaaattcagaaagtattaaaggctctgtgaagtcctgcaggcaacttcttatatttaatgcattatttctcaaacttacataagcacacaatacttttc--ccccaaggcatatctattaaggtcctacagaacaatattcttaggcataccattgagagatacAATTCTAAAATTATT---TTATCAAATATTATATTTCATGGCAAAA-TTTTCCCCATATATTGATATATTCCAATACGTAGTCTTCCTTTTTGCAATATAAATCTTTACAAGAAGAAATTATAAGCTTTGATTGAATCAGCATCTTAAATTCAAACCCTTAAATAATATTCATCCCAGTATAATTCTTCTTATTTAAATCTATACTTCAAATTGAGTTAGTCCTATAATTTTTCACTTCTAATTAAACCAATTACAGCAGGGTATGTCTACTGACCTACTTTCCAGAATT--TAAAAAA-TA---AACTAGGAAAAAATATCTTCTGAGCTGTGGGATGTTTCCAGAGCTTCATTAAAATAACTTGAAATTTTCATTTGGGTACAATTTTTGCTTCTTTTATGGTTCAAATATGCAGCACAAAAGATGACTGGAAGAAGATTATTGAAGGAAATTTAATAAAAGCAGAGTCTACATGAAGCAGCGCTGCTTC---ACTGCTACTCTTTCTGCTTTGAGGATGGCAAACTAGAAAAGCACTTAAAGAGAGAGATTAAGTTTTTACTTTACCCAAGACAGCATTAAAGCTGATTAAAAGGCTCCACTGAAATGGTAAAATGGCCATATCTCTAATATGTGCCAGTATAAAACTTTTAATCTAAAATTGGGCAGTCCTGGGGAAAAGAATTAGATTAAATTTATACCAATTTGAATTCTAGAAGTCAACCTCATGGCAGCCATTGGCTACTTATTCTGTGTCCTACACTAAATCTCAACTCAGTCCCAGGAGGACACATTTCCTACTACTACAGAGCAACCCTTTTCTGCCCAATGATCTTAGGATCAATTATCTATGAAGAGTAGACCATGTGGTAGTAACATATTTGCCAGGGAAC----AAAAAAAAGTCAGTTTTAATAATGATCAAATTCCACCCA-CCTCTTTATTTATTAATACCCAACTTACAAAAACAATACGTTAAGCTATACAATTCCCCC-CTGGAACTTTAAGCGCACATTATTAAAAGTTCCTTGTTTCCTGATAAGTTCCAATGGTTACAAAATTACTCAGTTTCTTTTAAGAATCAGGAAG---CCACCACCCATGGGCATTCAATACTGATTGTCATTTTTAACAAATTCTGGGAAAAAAACTTTAAAACTGGGTCACTACCACTAaaaggatgcagtttagttataatgtatcaatactgatttgttagttgtgacaaatataccataatcatgtaagatgttagcaaccggggaaactgggtgcctgtgtggtacacagaaactctctataccacctttgcaactgttttctaaatctaaaactat-GGTAATTTTTTTTT---AATTTTAAAATTAAAAGTAGGTCACCAGAAATTTCCTACCCACATAATACAGTCTCATTTTGAATGTAGGCAAAGCAGGATTCTCAATTCTAGGACTGTCTCTCT-AAAAAAGTAAAAAGCTGGTAATTTGATAAGATGACTGTAAGCGAAGCATGACTAAGTAGGCA-TGTATCAACAGTCAATATGGTATCTTTATCACCTAACAAAAACAAGGCGAAAATTTATCTTAGAAAACTTGGATTGCAGAGAATCCTATCTTCCAATTTAATCATCACACATTCATATAGCTCATGTTACACACACAGTACGGTAATATTTATTTGCTGAAAAGCAGAATACAAAAGTATTACATATTCCCCCTCCACCTATGAGTTCACCATCTAGTTAAGGACATATCACTGCCAAGAAGATTAAAATGATAGTATTGTCCCTGATTTCTAAGAGCACACATACTCTGATGGGCAACTCTCATGCCAACCTCAAAGGAAGATGTAATGGATAACAGTATGAAGTACACAAATACTGTGCTATGAATACTGTAGCTAAGATCATTCTGGAATAAACAGTGTATCATCTTTAATGTATAGTATCCTATCCCAAAAGTGGTATCAAAATGTCTTTAGTAAAATGAGT--AGT-----TTTTGTTCATTCTTTCATTCAACACCTACTGTCTGCCAAATGTTGCTGTATGTGCCGAGTA---------CGCCAACAA---AAATATCCTGCTCTAATAGAAACAGACAATAAGCACATGatgtagatggtgatatgtactatgaagaaaaataagcccagagtagatgatagagttgatggag
i chlSab2.chr24             C 0 N 0
s manLeu1.NW_012106475v1     5002356 2332 +   7169464 accctatatatgtcctctcttagaaattcagaaagtgttaaaggctctgagaagtcctgcaggcaacttcttatatttaatgcattatttctcaaacttacataatcacacaatacttttc--ccccaaggcatatctattgaggtcctacagaacaatattcTTAGGCATACCATTGAGAGATACAATTCTAAAATTATT---TTATCAAATATTATATTTCATGGCAAAA-TTTTCCCCATATAATGATATATTCCAATACATAGTCTTCCTTTTTGCAATATAAATCTTTACAAGAAGAAATTATAAGCTTTGATTGAAT--GCATCTTAAATTCAAACCCTTAAATAATATTCATCCCAGTATAATTCTTCTTATTTAAATCTATACTTCAAATTGAGTTAGTCCTATAATTTTTCACTTCTAATTAAACCAATTACAGCAGGGTATGTCTACTGACCTACTTTCCAGAATT--TAAAAAA-TA---AACTAGGAAAAAATATCTTCTGAGCTGTGGGATGTTTCCAGAGCTTCATTAAAATAACTTGAAATTTTCATTTGGGTACAATTTTTGCTTCTTTTATGGTTCAAATATGCAGCACAAAAGATGACTGGAAGAGGATTATTGAAGCAAATTTAATAAAAGCAGAGTCTATATGAAGCAGCACTGCTTCACGACTGCTACTCTTTCTGCTTTGAGGATGGCAAACTAGAAAAGCGCTTAAAGAGAGAGATTAAGTTTTTACTTTACCCAAGACAGCATTAAAGCTGATTAAAAGGCTCCACTGAAATGGTAAAATGGCCATATCTCTAATATGTGCCAGTATAAAACTTTTAATCTAAAATTGGGCAGTCCTGGGGAAAAGAATTAGATTAAATTTATACCAATTTGAATTCTAGAAGTCAACCTCATGGCAGCCATTGGCTACTTATTCTGTGTCCTACACTAAATCTCAACTCAGTCCCAGGAGGACACATTTCCTA-GACTACAGAGCAACCCTTTTCTGCCCAATGATCTTAGGATCAATTATTTATGAAGAGTAGACCATGTGGTAGTAACATATTTGCCAGGGAACAAAAAAAAAAAAATCAGTTTTAATAATGATCAAATTCCACCCA-CCTCTTTATTTATTAATACCCAACTTACAAAAACAATACGTTAAGCTATACAATTTCCCC-CTGGAACTTTAAGCGCACATTATTATAAGTTCCTTGTTTCCTGATAAGTCCCAATGGTTACAAAATTACTCAGTTTCTTTTAAGAATCAGGAAG---CCACCACCCATGGGCATTCAATACTGATTGTCATTTTTAACAAATTCTGGGAAAAAAACTTTAAAACTGGGTCACTACCCCTAaaaggatgcagtttagttataatttatcaatactgatttgttagttgtgacaaatataccataatcatgtaagatgttagcaacaggggaaactgggtgcctgtgtggtacacagaaactctctataccacctttgcaactgttttctaaatccaaaactat-GGTAATTTTTTTTTA--AATTTTAAAATTAAAAGTAGGTCACCAGAAATTTCCTACCCACATAATACAGTCTCATTTTGAATGTAGGCAAAGCAGGATTCTCAATTCTAGGACTGTCTCTCT-AAAAAAGTAAAAAGCTGGTAATTTGATAAGATGACTGTAAGCGAAGCATGACTAAGTAGGCA-TGTATCAACAGTCAATATGGTATCTTTATCACCTAACAAAAACAAGGCAAAAATTTATCTTAGAAAACTTGGATTGCAGAGAATCCTATCTTCCAATTTAATCATCACACATTCATATAGCTCATGTTACACACACAGTACGGTAATATTTATTTGCTGAAAAGCAGAATACAAAAGTATTACATATTCCCCCTCCACCTACGAGTTCACCATCTAGTTAAGGACATATCACTGACAAGAAGATTAAAATGATAGTATTGTCCCTGATTTCTAAGAGCACACATACTCTGATGGGCAACTCTCATGCCAACCTCAAAGGAAGATATAATGGATAACAGTATTAAGTATACAAATACTGTGCTATGAATACTGTAGCTAAGATCATTCTGGAATAAACAATGTATCATTTTTAATGTATAGTATCCTATCCCAAAAGTAATATCAAAATGTCTTCAGTAAAATGAGT--AGT-----TTTTGTTCATTCTttcattcaacacctactgtctgccaaatgttgctgtatgtgccgagta---------cgctaacaa---aaatatcctgctctaatagaaacagccaataagcacatgatgtagatggtgatatgtactatgaagaaaaataagcccagagtagatgatagagttgatggag
i manLeu1.NW_012106475v1    C 0 N 0
s colAng1.NW_012119265v1    12870258 2323 -  12953760 accctatatatgtcctctcttagaaattcagaaagtgttaaaggctctgagaagtcctgcaggcaacttcttatatttaatgcattatttctcaaacttacataagcacacaatacttttc--ccccaaggcatatctattaaggtcctacagaacaatattcttaggcataccattgagagatacAATTCTAAAATTATT---TTATCAAATATTATATTTCATGGTAAAA-TTTTCCCCATATATTGATATATTCCAATATGTAGTCTTCCTTTTTGCAATATAAATCTTTACAAGAAGAAATTATAAGCTTTGATTAAAT--GCATCTTAAATTCAAACCCTTAAATAATATTCATCCCAGTATAATTCTTCTTATTTAAATCTATACTTCAAATTGAGTTAGTCCTATAATTTTTCACTTCTAATTAAACCAATTACAGCAGGGTATGTCTACTGACCTACTTCCCAGAATT--TAAAAAA-TA---AACTAGGAAAAAATATCTTCTGAGCTGTGGGATGTTTCCAGAGCTTCATTAAAATAACTTGAAATTTTCATTTGGGTACAATTTTTGCTTCTTTTATGGTTCAAATATGCAGCACAAAAGATGACTGGAAGAGGATTACTGAAGCAAATTTAATAAAAGCAGAGTCTATATGAAGCAGCGCTGCTTC---ACTGCTACTCTTTCTGCTTTGAGGATGGCAAACTAGAAAAGCGCTTAAAGAGAGAGATTAAGTTTTTACTTTACCCAGGACAGCATTAAAGCTGATTAAAAGGCTCCACTGAAATGGTAAAATGGCCATATCTCTAATATGTGCCAGTACAAAACTTTTAATCTAAAATTGGGCAGTCCTGGGGAAAAGAATTAGATTAAATTTATACCAATTTGAATTCTAGAAGTCAACCTCATGGCAACCATTGGCTACTTATTCTGTGTCCTACACTAAATCTCAACTCAGTCCCAGGAGGACACATTTCCTATTACTACAGGGCAACCCTTTTCTGCCCAATGATCTTAGGATCAATTATCTATGAAGAGTAGACCATGTGGTAGTAATATATTTGCCAGGGAAC----AAAAAAAAATCAGTTTTAATAATGATCAAGTTCCACCCAGCCTCTTTATTTATTAATACCCAACTTACAAAAACAATACGTTAAGCTATACAATTCCTCC-CTGGAACTTTAAGTGCACATTATTATAAGTTCCTTGTTTCCTCATAAGACCCAATGGTTACACAATTACTCAGTTTCTTTTAAGAATCAGGAAG---CCACCACCCATGGGCATTCAATACTGATTGTCATTTTTAACAAATTGTGGGAAAAAAGCTTTAAAACTGGGTCACTACCCCTAaaagtatgcagtttagttataatgtatcaatactgatttgttagttgtgacaaatataccataatcatgtaagatgttagcaacaggggaaattgggtgcctgtgtggtacacagaaactctctataccacctttgcaactgttttctaaatctgaaactat-GGTAATTTTTTTTT---AATTTTAAAATTAAAAGTAGGTCACCAGAAATTTCCTACCCACATAATACAGTTTCATTTTGAATGTAGGCAAAGGAGGATTCTCAATTCTGGGACTGTCTCTCT-AAAAAAGTAAAAAGCTGGTAATTTGATAAGATGACTGTAAGCGAAGCATGACTAAGTAGGCA-TGTATCAACAGTCAATATGGTATCTTTATCACCTAACAAAAACAAGGCAAAAATTTATCTTAGAAAACTTGGATTGCAGAGAATCCTATCTTCTAATTTAATCATCACACATTCATATAGCTCATGTTACACACACAGTACGGTAATATTTATTTGCCGAAAAGCAGAATACAAAAGTATTACATATTCCCCCTCCACCTATGAGTTCACCATCTAGTTAAGGACATATCACTGCCAAGAAGATTAAAATGATAGTATTGTCCCTGATTTCTAAGAGCACACATACTCTGATGGGCAACTCTCATGCCAACCTCAAAGGAAGATATAATGGATAACAGTATTAAGTATACAAATACTGTGCTATGAATACTGTAGCTAAGATCATTCTGGAATAAACAGTGTGTCATCTTTAATGTATAGTATCCTATCCCAAAAGTGGTATCAAAATGTCTTTAGTAAAAT---T--AGT-----TTTTGTTCATTCTttcattcaacacctactgtctgccaaatgttgctgtatgtgccgagta---------cgctaacaa---aaatatcctgctctaatagaaacagacaataagcacatgatgcagatggtgatatgtactatgaagaaaaataagcccagagtagatgatagagttgatggag
i colAng1.NW_012119265v1    C 0 N 0
s calJac3.chr10             55887627 2276 - 132174527 accctatatatgttctctcttagaaattcaggaagtgtttaaggctctgagaagacctgcaggcaacttcttaaatttaatgcactatttctcaaacttacttgagcacacaatacatttttcccccaatgaatatctattaaggtcctacagaacaatattcTTAGGCATACCATTTAGAGATGCAATTCTAAAATGATTTTCTTACCAAA---TATATTTCATGGTAAAATTTTTCCCTATATATTGATATATTCCTACATTTAGTCTTCTTTTTTGCTATATAAATCTTTTCAAAAAGAAATTATAAGCTCTGATTAAAT--GTATCTTAAATTCAAACCCTTAAATAATATTTATCCCAGT---ATAATTCTTATTTAAATCTATACTTAAAATTGAATTAGTCCTATCATTTTTCACTTCTAATTAAACCAATTAAAGCAGGGTATGTCTACTGACCTCCTTTCCAGAATTAAAAAAAAA-AAAATAACTAGG-AAAAATGTCTTCTAAGCTTTGGGATGTTTCCAGAACTTCATTAAAATAACTTGAAATTTGCATTTGGGTACAACTTTTACTTATTTTATGGTTCAAATATGCAGCACAAAAGATGATTGCAAGAGGATTATTGAAGCAAATTTAATAGAAGCAGAGTCTACATGAAGTAGTGCTACTTC---ACTGCTGCTTTCTCTGCTTTGAGGATGGCAAACTAGTAAAGCCCTTAAAGAGAGAGATTAAGTTTTTACTTTACCCAAGACAGCATTAAAGCTGATTAAAAGGTTCCACTGAAATGGCAAAATAGCCCTATCTCTATCATGTGCCAGTATAAAAC--TTAATCTTAAATTGAGCAGTCCTAGGGAAAAGAATTAGATTAAATTTATACCAATTTGAATTCTGGGAGTCACCCTCA---CAGCTATTTGCTACATATTCTGCATCCTAAACTAAATTCCAACTCAGTCACAGGAGGACACATTTCCTA---CTAGAGGGCAACCCTTTTTAGCCCAACA----------------------------------TGTTGTAGTAACATATTTTCCAAGGAAC-------AAAAAACCAGTTTTAATAGTGATCAAACCCCACCCAGCCTCTTTAT----TAATACCCAACTTACAAAAAAAATATGTTAAGCTATACAATTCCCCCACTAGAGTTTTAAGCCCACATTATTATGAGTCCCTTATTTCCTCATAAGTCCCAATGGTTACAAAGTTACTCAGTTTCTTTTAAGAATCAGGAAG---CCACCACCCATGGGCATTCAATACTGATT-TCATTTTTAATGAAGTGTGGGAAATAAGCTTTAAAACTGGGTCACTACCCCTAaaagtatgcattttagttacaatgtatcaatactgatttgttagttgtaacaaatgtatgacaaacatgtaagatgttagcaacaggggaaactgggtgcctgtg-ggtatacagaaa--ctcaatatgaactttgcaacttttctctaaatctaaaactat-GGtatttttttttt---aattttaaaatCAAAAGTAGGTCACCAGAAATTTCCTACCTACATAATATAGTCTCATTTTGAATGGAGGCAAAGGAGGATTTTCAATTCTAGGACTGTCTCTTT-AAAAAAGCAAAAGGATGGTAATTTCATGAGATTACTATAAGTGAAGCATGACTAAGTAGGTA-TATGTCAACAGTCAACATGGTATCTTTATTACC-----------AGGCAAAATTTTATCTTGGAAAAC-TGTATTGCAGAGAATCCTATCTTCTAATTTAATCATCACACATTTATATAGCTCATGTTAT--ACTCAGTACCGTAATATTTACTTGCTGAAAAGCAGAATACAAAAGCA----ATATTCCCCCTCTACCTATGAGTTCACCATCTAATGAAGAACACATCACTGCCAAGAAGCTTAAGATGATAGTAATACCCCTGATTTCTAAGAGCACACATACTTTGATGGGCAACTCTCATGCAAAACTCAAAGGAAGATATAATGAATAATAGCATT-AGTATACAAATACTGTGCTATGAATAATGTAGCTAAGATCATTCTGGAATAAACAGTGTATCATCTTTAATGAATAGTATCCTATCACAAAAGTGTTATCAAAATGTCTTTAGTAAAACATTTCTTTTTGTTCTTTTTttcattcattcattcaatacctactgtttgccaagttctgctgtatgtgctgagtacactaacagcattaacaaaacaaataccctgctctaacagaaacagacaataagcatacgacatagacagtgatatgtactaggaagaaaaataagcccagaatagat--gagagttgatagag
i calJac3.chr10             C 0 C 0
s saiBol1.JH378143           7270541 2282 +  18744880 accctatatatgttctctcttagaaattcaggaagcgtttaaggctctgagaagacctgcaggcaacttcttaaatttaatgcagtatttctcaaacttacttgagcacacaatacatttttcccccaatgcat-tctattaaggtcctatagaacaatattcTTAGGCATACCATTTAGAGATGCAATTCTAAAATGATTTTCTTATCAAATATTATATTTCATGGTAAAATTTTTCCCTATATATTGATATATTCCAACATTTAGTCTTCTTTTTTGCTATATAAATCTTTTCAAGAAGAAATTATAAGCTCTGATTAAAT--GTATCTTAAATTCAAACCCTTAAATAATATTCACCCCAGTATAATAATTCTTATTTAAATCTATACTTAAAATTGAGTTAGTCCTATAATTTTTCACTTCTAATTAAATCAATTAAAGCAGGGTATGTCTACTGACCTCCTTTCCAGAATT--AAAAAAA-AATATAACTAGGAAAAAATATCTTTTGAGCTTTGGGATGTTTCCAGAACTTGATTAAAATAACTTGAAATTTGCATTTGTGTACAATTTTTACTTATTTTATGGTTCAAATATGCAGCACAAAAGGTGACTGCAAGAAGATTATTGAAGCAAATTTAATAGAAGCACAGTCTACATGAAGCAGTGCTACTTC---ATTGCTGCTTTTTCTGCTTTGAGGATGGCAAACCAGTAAAGCTCTTAAAAAGAGAGATTAAGTTTTTACTTTACCCAAGACAGCATTAAAGTTGATTAAAAGGTTCTACTGAAATGGCAAAATAGCCATATCTCTAATATGCGCCAGTATAAAAC--TTAATCTTAAATTGGGCAGTCCTAGGGAAAAGAATTAGATTAAATTTATACCAATTTGAATTATAGGAGTCACCCTCA---TGACTATTTGCTACATATTCCGTGTCCTAAACTAAATTGCAACTCAGTCCCAGGAGGACACATTTCCTA---CTAGAGGGCAACCCTTTTCAGCACAATA-------------------------------------TGTGGTACCATATTTTCCAAGGAAC-------AAAAAATCAGTTTTAATAGTGATCAAACCCCAGCCAGCCTCTTTAT----TAATACCCAACTTAC-AAAAAAATATGTTAAGCTATACAATTCCCCCACTAGAGTTTTAAGCCCACATTATTATGAGTCCCTTATTTCCTGATAAGTCCCAATGGTTACAAAGTTACTCAGTTTCTTTTAAGAATCAGGAAG---CCACCACCCATGGGCATTCAATACTGATT-TCATTTTTAACAAATTGTGGGAAATAAGCTTTAAAACTGGGTCACTACCCCTAaaagtatgcattttagttacaatatatcaatactgatttattagttgtgacaaatgtatcatcatcatgtaagatgttagcaagagaggaaactgggtgcctgtg-ggtatacagaaa--ctcaatacgaactttgcaacttttctctaattctaaaactat-GGtaattttttttt---aattttaaaatCAAAGGTAGGTCATCAGAAATTTCCTATCTACATAATATAGTCTCATTTTGAATGGAGGCAAAGGAGGATTTGCAATTCTAGGACTGTCTCTTT-AAAAAAGCAAAAGGATGGTAATTTCATGAGATTACTATAAGGGAAGCACGACTAAGTAGGCATTATGTCAGCATTCAACATGGTATCTTCATTACCTAACAAAAACAAGGCAAAAATTTATCTTGGACAAC-TATATTGCAGATAATCCTATCTTCTAATTTAATCATCCCACATTTATATAGCTCATGTTAT--ACTCGGTACTGTAATATTTACTTGCTGAAAAGCAGAATATGAAAGCA----ATATT-CCCCTCTACCTATGAATTCACCATCTAATTAAGAACACATCATTGCCAAGAAGCTTAAGATGATAGTAATGTCCCTGATTTCTAAGAGCATGCATACTCTGATGGACAACTCTCATGCCAAACTCAAAGGAAGATATAATGGATAATAGCATT-AGTATACAAACACTGTGCTATGAATACTGTAGCTAAGATCATTCTGGAATAAACAGTGTATCATCTTTAATGCATAGTATCCTATCCCAAAAGTGTTATCAAAATGTCTTTAGTAAAACAAGTTCTGT-----TTCTTTTTGTTCattaattcaatacctactgtttgtcaagtgctgctgtatgtgctaagtacactaacagcattaacaaaacaaatatcctgctctaacagaaacagacaataagcatatgatatagacagtgatatgtactaggaagaaaaataagcctagaacagat--gagagttgatggag
i saiBol1.JH378143          C 0 C 0
e nomLeu3.chr6              44481742  308 - 121039945 I

a score=5034.000000
s hg38.chr15_KI270851v1_alt   238982 5 +    263054 TTGTG
s panTro5.chr15              9629620 5 +  83230942 TTGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71427440 5 -  99763055 TTGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1574302 5 -   1649220 ttgtg
i gorGor5.CYUI01015574v1    C 0 C 0
s macFas5.chr7              55984767 5 - 171882078 atacg
i macFas5.chr7              C 0 C 0
s calJac3.chr10             55889903 5 - 132174527 atatg
i calJac3.chr10             C 0 N 0
s saiBol1.JH378143           7272823 5 +  18744880 atatg
i saiBol1.JH378143          C 0 N 0
e nomLeu3.chr6              44481742 308 - 121039945 I

a score=212.000000
s hg38.chr15_KI270851v1_alt   238987 3 +    263054 TCT
s panTro5.chr15              9629625 3 +  83230942 TCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71427445 3 -  99763055 TCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1574307 2 -   1649220 tc-
i gorGor5.CYUI01015574v1    C 0 C 0
s macFas5.chr7              55984772 3 - 171882078 ttt
i macFas5.chr7              C 0 N 0
e nomLeu3.chr6              44481742 308 - 121039945 I

a score=119755.000000
s hg38.chr15_KI270851v1_alt   238990 222 +    263054 TAATTTGCCTTATTTTACATATATTTAACGTATTAAAATCGTGCTGACATCCTATGTGGAAAGGTTTACTGAAAATTTGAGAGACAGAGA----ATGGCTGATCTGTAGAACATGGGTACTGTCTAAAAGAACCTTCACTGATTCTTTCAAACTTTTCCAGAGATAAACTTAGACTCATTTTGAAAGTTGCTTTATTACCAAAAAATTGCCACTCCATGAAAAGTT
s panTro5.chr15              9629628 226 +  83230942 TAATTTGCCTTATTTTACATATATTTAATGTATTAAAATCGTGCTGACATCCTATGTGGAAAGGTTTACTGAAAATTTGAGAGACAGAGAGAGAATGGCTGATCTGTAGAACATGGATACTGTCTAAAAGAACCTTCACTGATTCTTTCAAACTTTTCCAGAGATAAACTTAGACTCATTTTGAAAGTTGCTTTATTACCAAAAAATTGCCACTCCATGAAAAGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71427448 226 -  99763055 TAATTTGCCTTATTTTACATATATTTAACGTATTAAAATCTTGCTGACATCCTATGTGGAAAGGTTTACTGAAAATTTGAGAGACAGAGAGAGAATGGCTGATCTGTAGAACATGGGTACTGTCTAAAAGAACCTTCACTGATTCTTTCAAACTTTTCCAGAGATAAACTTAGACTCATTTTGAAAGTTGCTTTATTACCAAAAAATTGCCACTCCATGAAAAGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015574v1     1574309 222 -   1649220 ----ttgtcttattttacataTATTTAATGTATTAAAATCGTGCTAACATCCTATGTGGAAAGGTTTACTGAAAATTTGAGAGACAGAGAGAGAATGGCTGATCTGCAGAACATGGGTACTGTCTAAAAGAACCTTCACTGATTCTTTCAAACTTTTCCAGAGATAAACTTAGACTCATTTTGAAAGTTGCTTTATTACCAAAGAATTGCCATTCCATGAAAAGTT
i gorGor5.CYUI01015574v1    C 0 N 0
e nomLeu3.chr6              44481742 308 - 121039945 I

a score=654353.000000
s hg38.chr15_KI270851v1_alt   239212 1224 +    263054 CAGCACTTGATGCCAATAGATGTGACAACAAAAAAGCAACTTCGGCATCACATATATGGTCAGGAAAACCATCAGAAACTAAGAGAttttttttttttttttt----------------------ggtgatggagtcttgctctgtcacccaggctggagtatagtgttgcaatctgggctcactgcaacctccgcctccccggttcgagtgattatcctgcctcagcctaccgagtagctgggattacaggcatgcaccaccacaccccaaaatgaggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccacctctgttgcaggaagtcagggaccccaaacggagggaccagctgaagccatggcagaagaacataaattgtgaagatttcatggagatttattagttccccaaattaatacttttataatttcttacgcctgtctttactgcagtctctgaacataaattgtgaagatttcatggacacttatcacttccccaatcaatacccttgtgatttcctatgcctgtcttta-----atctcttaatcccgtcatcttcataagctgaggaggatgtatgtcgcctcaggactctgtgatgattgcgttaactgcacaaattgtttgtagaacatgtgtgtttgaacaatatgaaatctgggcaccttgaaaaaacaacaggataacagcaatgttcagggaacaagagagataatcttaaactctgactgccggtgagccgggcggaacagagccatatttctcttctttgaaaagcaaatgggagaaatatcgttgagttctttttctcagcaaggaacatccctgagaaagagaatgtatccctgaggggaggcctctgaaatggccactttggggacggctgtcttttacagtcacagcagagggatgaaataagccccggtctcccatagcgctcccagtcttattaggacgaggaaattcctgcctaataaattttggtcagaccagttgtctgctctcaaaccctgtttcctgataagatgttatcaatgacaatgcgtgtctgaaacttcattagcaattttaattttgccccggtcctgtggtcctgtgatctcgccctgcctccacttgccttgtgatattctattaccttgtgaagcatgtgatctctgtgacccacaccctattcgtacactccctccccttttgaaaattgctaataaaaacttgct
s panTro5.chr15              9629854 1251 +  83230942 CAGCACTTGATGCCAATAGGTGTGACAACAAAAAAGCAACTTCGGCATCACATATATGGTCAGGAAAACCATCAGAAACTAAGAGAtttttttttttttttttttttttttttttttctttttttGGTgatggagtcttgctctgtcacccaggctggagtatagtgttgcaatctgggctcactgcaacctccgcctccccggttcgagtgattatcctgcctcagcctaccgagtagctgggattacaggcatgcaccaccacaccccaaaatgaggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccacctctgttgcaggaagtcagggaccccaaatggagggaccagctgaagccatggcagaagaacataaattgtgaagatttcatggagatttattagttccccaaattaatacttttataatttcttacgcctgtctttactgaaatctctgaacataaattgtgaagatttcatggacacttatcacttccccaatcaatacccttgtgatttcctatgcctgtctttactttaatctcttaatcccgtcatcttcataagctgaggaggatgtatgtcgcctcaggaccctgtgatgattgcgttaactgcacaaattgtttgtagaacatgtgtgtttgaacaatatgaaatctgggcaccttgaaaaaacaacaggataacagcaatgttcagggaacaagagagataatcttaaactctgactgccggtgagccgggcggaacagagccatatttctcttctttgaaaagcaaatgggagaaatatcattgagttctttttctcagcaaggaacatccctgagaaagagaatgtatccctgaggggaggcctctgaaatggctgctttggggacggctgtcttttacagtcacagcagagggatgaaataagccccggtctcccatagcgctcccagtcttattaggacgaggaaattcctgcctaataaattttggtcagaccagttgtctgctctcaaaccctgtttcctgataagatgttaccagtgacaatgcgtgtctgaaacttcattagcaattttaattttgccccggtcctgtggtcctgtgatctcgccctgcctccatttgccttgtgatattttattaccttgtgaagcatgtgatctctgtgacccacaccctattcgtacactccctccccttttgaaaatcgctaataaaaacttgct
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71427674 1225 -  99763055 CAGCACTTGATGCCAATAGGTGTGACAACAAAAAAGCAACTTCAGCATCACATATATGGTCAGGAAAACCATCAGAAACTAAGAGAtttttttttttttttt-----------------------ggtgacagagtcttgctctgtcacccaggctggagtacagtgttgcaatctgggctcactgcaacttccgcctccctggttcaagtgattatcctgcctcagcctaccgagtagatgggattacaggcgtgcaccaccacaccccaaaatgaggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacctacctctgttgcaggaagtcagggaccccgaacggagggaccggctgaagccatggc---agaacataaattgtgaagatttcatggagatttattagttccccaaattaatacttttataatttcttacgcctgtctttattgcaatatctgaagataaactgtgaagatttcatggacacttatcacttcctcaatcaatacccttgtgatttcctatgcctgtctttactttaatctcttaatcccatcatcttcgtaaactgaggaggatgtatgtcccctcaggaccctgtgatgattgcgttaactgcacaaattgtttgtagagcatgtgtgtttgaacaatatgaaatctgggcaccttgaaaaaacaacaggataacagcaatattcagggaacaagagagataaccttaaactctgactaccagtgagccgggcggaacagagccatatttctcttctttcaaaagcaaatgggagacatatcattgagttctttttctcagcaaggaacatctctgagaaagagaatgcgtccctgaggggaggcctctgaaatggccactttggggatggctgtcttttacagtcatagcagagggatgaaataagccccggtctcccgtagtgctctcaggcttattaggacgaggaaattcctgcctaataaattttggtcagaccagttgtctgctctcaaaccctgtttcctgataagatgttatcaatgacactgcgtgcccaaaacttcattagcaattttaatttcgccccagtcctgtggtcctgtgatcttgccctgcctccatttgccttgtgatattctattaccttgtgaagtatgtgatctctgtgacccacaccctatttgtacactccctccccttttgaaaatcgctaataaaaacttgcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1           0 1224 -    281578 CAGCACTTGATGCCAATAGGTGTGACAACAAAAAAGCAACTTTGGCATCACATATATGGTCAGGAAAACCATCAGAAACTAAGAGtttttttttttttttttt----------------------ggtgacggagtcttgctctgtcacccaggctggagtatagtgttgcaatctgggctcactgcaccctccgcctccccggttcaagtgattatcctgcctcagcctaccgagtagctgggattacaggtgtgcaccaccacaccccaaaatgaggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccacctctgttgcaggaagtcagggaccccgaatggagggaccggctgaagccatggcagaagaacataaattgtgaagatttcatggagatttattagttccccaaattaatacttttataatttcttacgcctgtctttactgcaatctctgaacataaattgtgaagatttcatggacacttatcacttccccaatcaatacccttgtgatttcctatgcctgtcttta-----atctcttaatcctgtcatcttcgtaagctgaggaggatgtgtgtcgcctcaggaccctgtgatgattgcgttaactgcacaaattgcttgtagagagtgtgtgtttgaacaatatgaaatctgggcaccttgaaaaaacaacaggataacagcaatgttcagggaacaagagagataaccttaaactctgactgccagtgagctgggtggaacagagccatatttctcttctttgaaaagcaaatgggagaaatatcattgagttctttttctcagcaaggaacatccctgagaaagagaatgtatccctgaggggaggcctctgaaatggctgctttgcagacagctgtcttttacagtcacagcagagggatgaaataagccccagtctcccatagcgctcccaggcttattaggacaaggaaattcctgcctaataaattttggtcagaccggttgtctgctctcaaaccctgtttcctgataagatgttatcaatgacaatgcgtgtctgaaacttcattagcaattttaattttgccccggtcctgtggtcctgtgatctcgccctgcctccatttgccttgtgatattttattaccttgtgaagcacgtgatctctgtgacccacaccctattcgtacactccctccccttttgaaaatcgctaataaaaacttgct
i gorGor5.CYUI01000141v1    N 0 C 0
e nomLeu3.chr6              44481742  308 - 121039945 I

a score=1310547.000000
s hg38.chr15_KI270851v1_alt   240436 1508 +    263054 ggttttacggctcagggggcatcacggaacctgccaacatgtgatgtctcctccggacacccagctttaaaatttctcttttgtactctgttcctttatttctcagaccggccaacacttagggaaaatagaaaagaaactatgtgaaatatcgggggtgaattttgcccgatacacctcagcctcccaaagtgccaggattacaggtgtgagccttcgtgcctggccGATAACTCCT-------------TTGAAACAACATAAATATGGAAATGAACTACTCACATatgttattatattgcccatatccttctgcagcttgcctttttcacccaaagttttcttcatgagatttacccatgttaattcttttcaatctagtatgttcatgtttaattgctgtataatattccaccacatggatatgagt----ttatccaatctcttgttggttaacttacattctgcatcatcttatgttactgcaaatactaccgtgataaacaggttttccaaatttctttgtacacatgtgtttttttgctcaggtatgtgcatcttcaacttcattagagattataaaattgcactccaCTTTACCTAGCTgagtttccactggcccatatctctgccagcaattctgtcagacttacattttcgccaatctgaagatgacagaatagtcattttaactttcaatttatccatgagtttctagttcaagtatcttttcccatgtttactgaccattccagtttcttcctctataaagtaactcttcacatcctatgcccattttgtcttaagtttttcttttcattattaggctatttttcatatcctggatactaaCCATTACAAAAAGTTTCCCTACAACAAGATCACAAAGAC----AGGTAAATTTTCTTTGAAATTTTTTCTAGTTTTTCTTTTCATATTTTAGTCTTATAATGTCAGAAAaaaagacctaacactcaaatgtcaaaaaaaaacctaactgaataaaaaagtggtacatccacactacaaagtactaattttaaaaaagatgaagaacatttctataaacagatatgaagtgatctctaagagaagtttaaaaaggtgcaaaatgggccggatgcagtggctcacacctgtaattcccagcactttgaaaacactctgggaggctgaggcaggtggatcgcctgagcc--------cgatatcagcctgggcagcatggcaaaacccagtcactaccaaaaatacaaaaaaaatagccgggtgtggtggcacacacctgtggttccagctaccctggaggctggggtgggaagacagcttgagtctaggaggcagaggtttcattgagccaagatcacaccactgtactccagcctcagtgacagagtgagaccccaccccaggtcaaaaaac----aaagtgcacaatggtatatgctatcttttatctaagggagggagaaaatattcctgcctcagcctcccgagtggctgggattgcaggc-tgagccaccatgcccggctaattt
s panTro5.chr15              9631105 1507 +  83230942 ggttttacggctcagggggcatcacggaacctgccaacatgtgacgtctcccccagacacccagctttaaaatttctcttttgtactctgttcctttatttctcagaccggccaacacttagggaaaatagaaaagaaactatgtgaaatatcggggGTGAATTTTGCCCGATAcacctcagcctcccaaagtgccaggattacaggtgtgagccttcgtgcctggccGATAACTCCT-------------TTGAAACAACATAAATATGGAAATGAACTACTCACATatgttattatattgcccatatccttctgcagcttgcctttttcacccaaagttttcttcatgagatttacccatgttaattcttttcaatctagtatgttcatgtttaattgctgtataatattccaccacatggatatgagt----ttatccagtctcttgttggttaacttacattatgcatcatcctatgttactgcaaatactaccgtgataaacaggttttccaaatttctttgtacacatgtgtttttttgctcaggtatgtgcgtcttcaacttcattagagattataaaattgcactccaCTTTACCTAGCTgagtttccactggcccatatctctgccagcaattctgtcagacttacattttcaccaatctgaagatgacagaatagtcattttaactttcaatttatccatgagtttctagttcaagtatcttttcccatgtttactgaccattccaatttcttcctctataaagtaactcttcacatcctatgcccattttgtcttaagtttttcttttcattattcggctatttttcatatcctggatactaaCCATTACAAAAAGTTTCCCTACAACAAGATCACAAAGAC----AGGTAAATTTTCTTTGAAATTTTTTCTAGTTTTCCTTTTCATATTTTAGTCTTATAATGTCAGAAAAAAAGACCTAACactcaaatgtcaaaaaaaa-cctaactgaataaaaaagtggtacatccacactacaaagtactaattttaaaaa-gatgaagaacatttctataaacagatatgaagtgatctctaagagaagtttaaaaaggtgcaaaatgggccggatgcagtggctcacacctgtaattcccagcactttgaaaacactctgggaggctgaggcaggtggatcgcctgagcc--------cgatatcagcctgggcagcatggcaaaacccagtcactaccaaaaatacaaaaaaaatagccgggtgtggtggcacacacctgtggttccagctaccctggaggctggggtgggaagacagcttgagtctaggaggcagaggtttcattgagccaagatcacaccactgtactccagcctcagtgacagagtgagaccccaccccaggtcaaaaaac----aaagtgcacaatggtatatgctatctttcatctaagggagggagaaaatattcctgcctcagcctcccgagtggctgggattgcaggcatgagccaccatgcccggctaattt
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71428899 1528 -  99763055 ggttttatggatcagggggcatcacggaacctgcccacatgtgatgtctcctccggacacccagctttaaaatttctcttttgtactctttccctttatttctcagaccggctgacacttggggaaaatagaaaagaacctatgtgaaatatcagggatgaattttgcccgatacacctcagcttcccaaagtgctaggattacaggcatgagccttcacgcccggccgataactttt--tttttTAAACATTGAAATAACATAAATATGGAAATGAACTACCCACATCtgttattatattgcccatatccttctgcggcttgccttttttacccaaagttttcttcatgagatttacccatgttaattctttttaatctagtatgttcatgtttaattgctgtataatattccaccacatggatatgagtttaattatccaatctcttgttggttaacttacattctgcatcatcttatattactgcaaacactactgtgataaacagttattccaaatttctttgtacacatgtatttttttgctcaggtatgtgcatcttcaacttcattagagattataaaattgcgctccaCTTTACCTAGCTgagtttccactggcccatatctctgccaggaattctgtcagacttacatttttgccactctgaagatgacagaatagtcattttaactttcaatttatccatgagtttctggttcaagtatcttttcccacgtttactgaccattccaatttcttcctctataaagtaactcttcacatcctatgcccattttgtcttaagttttccttttcattattaggctatttttcatatcctggatactaaTCATTACAAAAAGTTTCCCTACAACAAGATCACAAAGACAGTTAGGTAAATTTTCTTTGAAATTTTTTCCAGTTTTCCTTTTCATATTTTAGTCTTACAATGTCAGAAAaaaagacctaacactcaaatgtcaaaaaaaa-cctaactgaataaaaaagtggtacatccacactacaaagtactaatttaaaaaaagatgaagaacatttctataaacagatatgaagtgatctctgagagaagtttaaaaaggtgcaaaatgggccgg-tgcagtggctcacacctgtaattcccagcactttgaaaacattctgagaggctgaggcaggtggatcgcctgagcc--------cgatatcagcctgggcagcatggcaaaacccagtcactaccaaaaatacaaaaaaaatagccgggtgtggtggcacacacctgtggttccagctaccctggaggctgaggtgggaagacagcttgagtctaggaggcagaggtttcagtgagccaagatcaccccaatgtactccagcctcagtgacagagtgagaccccaccccaggtcaaaaaac-aataaagtgcacaatggtgtatgctatcttttatctaagggagggagaaaatattcctgtctcagtctcctgagtggctgggactgcagga-tgagccaccatgcccagctaattt
i panPan2.chr15             C 0 I 735
s gorGor5.CYUI01000141v1        1224 1529 -    281578 ggttttatggctcagggggcatcacggaacctgccaacatgtgac-tctcccccagacacccagctttaaaatttctcttttgtactctgttcctttatttctcagaccggccgacacttggggaaaatagaaaagaacctatgtgaaatatcgggggtgaattttgcccgatacacctcaacctgccaaagtgccagggttacaggcgtgagccttcacgcccggccgataactcctttttttttaAACATTGAAACAATATAAATATGGAAATGAACTACTCACATatgttattatattgcccatatccttctacagcttgcctttttcacccaaagttttctttatgagatttacccatgttaattcttttcaatctggtatgttcgtgtttaattgctgtataatattccaccacgtggatatgagt----ttatccaatctcttgttggttaacttacattc-gcatcatcttatgttactgcaaatactaccgtgataaacaggttttccaaatttctttgtacacatgtgtttttttgctcaggtatgtgcgtcttcaacttcattagagattataaaattgtactccaCTTTACCTAGCTgagtttccactggcccatatctctgccagcaattctgtcagacttacattttcgccaatctgaagatgacagaatagtcattttaactttcaatttatccatgagtttctagttcaagtatcttttcccacgtttactgaccattccaattgcttcctctataaagtaactcttcacatcctatgcccattttgtcttaagtttttcttttcattattatgctatttttcatatcctggatactaaCCATTACAAAAAGTTTCCCTACAACAAGATCACAAAGAC----AGGTAAATTTTCTTTGAAATTTTTTCTAGTTTTCCTTTTCATATTTTAGTCTTATAATGTCAGAAAaaaagacctaacactcaaatgtcaaaaaaaaacctaactgaataaaaaagtggtacatccacactacaaagtactaattttaaaaaagacgaagaacatttctataaacagatatgaagtgatctctgagagaagtttaaaaaggtacaaaatgggctgg-tgcagtggctcacacctgtaattccccgcactttgaaaacactctgggaggctgaggcaggtggatcgcctgagcccaagagctcgatatcagcctgggcagcatggcaacacccagtcactaccaaaaatacaaaaaaagtagccgggtgtggtggcacacacctgtggttccagctaccctggaggctgaggtgggaagacagcttgagtctaggaggcagaggtttcattgagccgagatcgcatcactgtactccagcctcagtgacagagtgagacccca-cccaggtcaaaaaacaaataaagtgcacaatggtgtatgctatcttttatctaagggagggagaaaatattcctgcctcagcctcccgagtggctgggactgcaggc-tgagccaccatgcccggctaattt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44482050 1533 - 121039945 ggttttatggctcagggggcatcacagaacctgccgacatgtgatgtctccccaggacacccagctttaaaatttctcttttgtactctttccctttatttctcagaccggccgacacttagggaaaatagaaaagaaactacgtgaaatatcgggggtgaattttgcccgatacacctcagcctcccaaagtgctaggattacaggcgtgagccatcatgcccggccAATAACTCCT-TTTTTTTAAACATTGAAACAACATAAATATGGAAGTGAACTACTCACATatgttattatattgcccatatccttctgcagcttgcctttttcacccaaagttttctttatgagatttacccatgtgaattcttttcaatctagtatgttcatgtttaattgttgtataatattccaccacatggatatgagtttaattatccaatttcttgttggttaacttacattctgcatcatcttatgttactgcaaacactaccatgataaacagtttttccaaatttctttgtacacatgtatttttttgctcagctatgtgcatcttcaacttcattagcgattataaaattgcactccaCTTTACCTAGCTgagtttccactggcccatatctctgccagcaattctgtcagacttacattttcaccactctgaagatgacagaatagtcattttaactttc-atttatccattagtttctagttcaattatcttttcccatgtttactgaccactccaatttcttcttctataaagtaactcttcatatcctatgcccattttgtcttaagttttccttttcattattaggctatttttcatttcctggatactaaTCATTATAAAAAGTTTCCCTACAACAAGATCACAAAGAC----AGGTAAATTTTCTTTGAAATTTTTTCTAGTTTTCCTTTTCATATTTTAGTCTTATAATGTCAGAAAaaaagacctaacactcaaatgtcaaaaaaaa--ctaactgaataaaaatgtggtacctccacactacaaagtactaatttaaaaaaagatgaagaacatttctataaacagatatgaagtgatctctgagagaagtttaaaaaggtacaaaatgggccggacgcagtggctcacacctgtaattcctagcactttgaaaacactctgggaggctgaggcaggtggatcgcctgagcccaagagctcgataccagcctgggcagcatggcaaaacccagtcactaccaaaaatacaaaaaaa-tagccgggtgtggtggcacacacctgtggttccagctactctggaggctgaggtgggaagacagcttgagtctaggaggcagaggtttcagtgagccaagatcacaccactgtactccagcctcagtgacagagtgagaccccaccccaggtcaaaaaacaaataaagtgcacaatggtgtatgttatcttttatctaagggagggagaaaatattcctgtctcagcctcctgagtagctgggattgcaggcgtgagccaccatgcccggctaattt
i nomLeu3.chr6              I 308 C 0

a score=410888.000000
s hg38.chr15_KI270851v1_alt   241944 806 +    263054 atttatttaattttttt--------------ggtggagatgggg---cttcatgttcgtggggctggtctcaaactcccgacctcaggttatctgcctgcctcgtcctctcagggtgctgggatGggaacaggaattaaaagaaattaaaaaatgtgtaaacaaaaactcagttgtatgtaaaa-----ccaattccccctgagaaagagaagagctagagtccttcaaaaaaaactactacctcctgtttttctatggc-agtgagccttatctctcctcccttcccgggcattataaaaaccctaattccctaactgtacaactgcaaggtcactaaacaaactcaagttacaaaacatatttttcctaaaaaaggaaaaaataatataatgcatgattcaattgaacaattatctttgtttctcacttctatcatatgcttcaccctgcacagatctacccccaccccataaaatgcttaaaaggtaagtctt-gttcagaactcagtgctttaaatgttaatccgactgggccaatgcacgtaaataattaattaataacctcctaaaccccatcagtctctctaattccttaaaaatccTGCTTCAGGATTGTAAGCATGAGCCACCGGGgtgctgggattgcaggtgtgagccaccgcacccagccCAATTTCTTAATcagaaaagaatagatcggcctggtgtggtggctcacgcttgtgatcccaagaatttggacagccgagcgtgttggatcccttgagcctaggagttccagaccagcctgggcaacatggtgaaaccgggtcactTTTtttgtttgtt
s panTro5.chr15              9632612 823 +  83230942 tttttttttttttttttttttttttttttttggtggagatgggg---cttcatgttcgtggggctggtctcaaactcccgacctcaggttatctgcctgcctcggcctctcagggtgctgggatGggaacaggaattaaaagaaattaaaaaatgtgtaaacgaaaactcagttgtatgtaaaaaaaacccaattccccctgagaaagagaagagctggagtccttcaaaaaaaactactacct---gtttttctgtggc-agtgagccttatctctcctcccttcccaggcattataaaaaccctaattccctaactgtacaactgcaaggtcactaaacaaactcaagttacaaaacatatttttcctaaaaaaggaaaaaataatataatgcatgattcaattgaacaattatctttgtttctcacttctatcatatgcttcaccctgcacagatctaccctcacctcataaaatgcttaaaaggtaagtctttgttcagaactcagtgctttaaatgttaatccgactgggccaatgcacgtaaataattaattaataacctcctaaaccccatcagtctctctaattcctTAAAAATTCCACTACAGGATTGTAAGCGTGAGCCACCGTGGTGCTGGGATTGCAGGTGTGAGGCACCGCACCCAGCCCAATTTATTAATCAGAAAAGAATAGATCggcctggtgtggtggctcatgcttgtgatcccaagaatttggacagccgagcgtgttggatcccttgagcctaggagttccagaccagcctgggcaacatggtgaaaccgggtcactttttttgtttgtt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        2753 802 -    281578 -------tttttttttt--------------ggtgcagatgggg---cttcatgttcatggggctggtctcaaactcccgacctcaggttatctgcctgcctcggcctctcagggtgctgggatGggaacaggaattaaaagaaattaaaaaatgtgtaaacaaaaactcagttgtatgtaaaa-aaacccaattccccctgagaaagagaagagctggagtccttcaaaaaaaactactacct---gtttttctatggctagtgagccttatctctcctcccttaccaggcattataaaaaccctaattccctaactgtacaactgcaaggtcactaaacaaactcaagttacaaaacatatttttcctaaaaaaggagaaaataatataatgcatgattcaattgaacaattatctttgtttctcacttctatcatatgcttcaccctgcacagatctaccctcacctcataaaatgcttacaaggtaagtctttgttcagaactcagtgctttaaatgttaatccgactgggccaatgcacgtaaataattaattaataacctcctaaaccccatcagtctctctaattccttaaaaatcccGCCACAGGATTGTAAGCATGAGCCACTGGGgtgctgggactgcaggtgtgagccaccgcacccagccCAATTTATTAATCAGAAAAGAATAGATCggcctggtgtggtggctcacgcttgtgatcccaagaatttggacagccgagcgtgttggatcgcttgagcctaggagttccagaccagcctgggcaacatggtgaaaccGGGTCACTTTTTTTGtttgtt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44483583 802 - 121039945 ---tttttttttttttt--------------ggtggagatggggtttctccatattcatggggctggtctcaaactcccaacctcaggttatctgcctgcctcggcctcctggggtgctgggatGggaacaggaattaaaagaaatttaaaaatgtgtaaacaaaaactcagttgtatgtaaaa--aacccaattccccctgagaaagagaagagctggagtccttcaaaaaaaactactacct---gtttttctatggctagtgagccttatctctcctcccttccaaggcattataaaaaccctaatcccctaactgtacaactgcaaggtcattaaacaaactcaagttacaaaacatatttttcctaaaaaaggaaaaaataatgtaatgcatgattcaattaaacaattatctttgtttctcacttctataatatgcttcaccctgcacagatctacccccaccccataaaatgcttaaaaaatgagtctttgttcagaactcagtgctttaaatgttaatccaactgggccgatgcacataaa----taattaataatctcctaaaccccatcagtgtctctaattccttaaaaatcccGCTACAGGATTACAAGCGTGAGCCACTGGGGTGCTGGCATTGCAGGTGTGAGCCAACGCACCCAGCCCAATTTATTAATCAGAAAAGAATAGATCggcctggtgtggtggctcacgcttgtgacgccaagaatttggacagccgagtgtggtggatcccttgagcctaggagttccagaccagcctgggcaacatggtgaaaccgggtcactttttt--tttgtt
i nomLeu3.chr6              C 0 C 0
e panPan2.chr15             71430427 735 -  99763055 I

a score=276537.000000
s hg38.chr15_KI270851v1_alt    242750 422 +    263054 ttttgtttttg--tttttttttgaggcggagttccgctcttgttgcccaggctggagtgcagtggtgtggactcagctcgccg-ggcctctgcctccccggtttgggtggttctcctgccacagcctccctagtggctgggattgcaggcgtgagccatcatgctcggctcttttttttttttttttttttttatttttttggtggagatggggtttctccatgttggtcaggctggtct-caaactcccgacctcaggttatctgcccgcctcggcctctaggggtgctgggatttcaggcgtgagccactgcgcAAGTCCCAATTTATTAATCATAAAGGAACTGATCggcctggcgtggtggctcacgat--tgatcccaggactttgtatggctgagcgcgggggatcacttgagactaggagt
s panTro5.chr15               9633435 405 +  83230942 ttctgtttttg--tgtttttttgaggcggagttctgctcttgttgcccaggctggagtgcagtggcgtggactcagctcgccg-ggcctctgcctcccggttttgggtggttctcctgccacagcctctctagtggctgggattgcaggcgtgagccatcatgctcggctctttttttttttttt----------------ggttgagatggggtttctccatgttggtcaggctggtct-caaactcccgacctcaggttatctgcccgcctcggcctctaggggtgctgggatttcaggcgtgagccactgcgcAAGTCCCAATTTATTAATCATAAAGGAACTGATCggcctggcgtggtggctcacgat--tgatcccaggacttt-tatggctgagcgcgggggatcacttgagactaggagt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         3555 418 -    281578 ttttgtttttgtttttttttttgaggtggagttccgctcttgttgcccaggctggagtgcagtggcgtggactcagctcgccg-ggcctctgcctccccggtttgggtggttctcctgcctcagcctctctagtggctgggattgcaggcgtgagccatcatgctcggctctttttttttttttttttttttt--------ggtggagatggggtttctccatgttggtcaggctggtct-caaactcccgacctcagattatctgcccgcctcggcctctaggggtgctgggatttcaggcgtgagccactgtgcaaggccCAATTTATTAATCATAAAGGAACTGATTggcctggtgtggtggctcacgattctgatcccaggactttgtatggctgagcgcgggggatcacttgagactaggagt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               44484385 416 - 121039945 ttttgtttttg--tttttttttgaggcggagttgcactcttgtcgcccaggctggagtgcagtggcatggactcagctcgccg-gtcctccgcctcctgggcttgggtggttctcctgccacagcctccctagtggctgggattgcaggcgtgagccatcgtgcttgactctttttttttttttttttttttt--------ggtagagatggggtttctccatgttggtcaggctggtct-caaactccccacctcaggttatctgcccgcctcggcctccaggggtgctgggatttcaggcgtgagccaccgcgcaagacccaatttattaatcataaaggaactgatcggcctggcgtggtgactcacgattctgatcccaggactttgtatggctgagcgtgggggatcacttgagcctaggagt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              170280440 371 - 171882078 ttttattttat--tttattttagagacggagtctcactc-tgtcacccaggctgg-gtgcagtggcgctatcccggctcactgcaacctccgcctcccagattcaagcaattctcctgcctcatcctcctgagtagctgggattacaggtgcccgcca-cacactcggctaatttttaaatattttt--------------ggtagagacggggtttcatcacgttggccaggctggtctccaaactcctgacctcaggtgatccacccactgaggcctcccaaagtgctgggatt----------------------------acttaataggcg---------tgatcggcctggcgtggtggctcacgcttttgatccca-gatgtaggatggctgagcgcagcagatcgcttgagcctaggagt
i macFas5.chr7              N 0 C 0
e panPan2.chr15              71430427 735 -  99763055 I

a score=87375.000000
s hg38.chr15_KI270851v1_alt    243172 205 +    263054 tccagactggcctgggcaacatgatgaaacttggtctc---------tttttttttttttttttttttttgagacagaatttcgctcttgctga-ctggctggagtgcagtggcgtggtctcggctgcctgtggcctccctct-ccgggtttggttggttctcctgcctcagcttcccaagtggctgggattgcaggtgtgagccactatgcccgg
s panTro5.chr15               9633840 202 +  83230942 tccagactggcctgggcaacatgatgaaacttggtctc---------tttttttttttttttttttt---gagacagaatttcgctcttgttga-ctggctggagtgcagtggcgtggtctcggctgcctgtggcctccgcct-ccgggtttggttggttctgctgcctcagcttcccaagtggctgggattgcaggtgtgagccactatgcccgg
i panTro5.chr15             C 0 C 0
s nomLeu3.chr6               44484801 214 - 121039945 tccagactggcctgggcaacatggtgaaacttggtctctCTCttttttttttttttttttttttttttttgaggcagaatttcactcttgttgc-ctggctggactgcagtggcatggtctcggctgcccgtggcctccacct-ccgggtttggtttgttctcctgcctcagcctcccaagtggctgggatcgcaggtgtgggccactatgcctgg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              170280811 197 - 171882078 tccagactgGCCTGGGCAACATGGTGAAATTAGGTCTG---------ttttgtttgtttt----------gaggcgaagtttcgctcttgttgctcaggctggagtgcgatgtcatggtctgggctccccgcggcctccacctcccgggtttgggtggttctcctgcctcagcctccccagtggctgggattgcaggcgtgaaccaccacacctgg
i macFas5.chr7              C 0 C 0
e panPan2.chr15              71430427 735 -  99763055 I
e gorGor5.CYUI01000141v1         3973   0 -    281578 C

a score=98065.000000
s hg38.chr15_KI270851v1_alt    243377 466 +    263054 ----------------------------ctttttttttttttttttttggtagagacggggtttcttcatgtttgtcaggctgatctcagactcccgacctcaggtgatccgcccgcctcggcctccctgggtgctgggattgcaggcttgagtcaccgttcctggcccaatttattaattagaaaggaatagattggcctggagtggtggctcatgcttgtgatcccaggaatttggacggccgagagcggcagatcgcttgagcctaggagttccagacCAGCCTGGGCAACACGGTGAAACCCGGTCGCTTTGttttttgtttttgttttgttttt-ttt---------ttttgaggtggagttacgctcttgttgcccaggctggagtgcagtggcgtggactcagctcactg-ggcctccgcctcctgggtttgggtggttctcctgcctcagcctcccgagtggctgggattgcaggtgtgaaccaccatacct-gctaa
s panTro5.chr15               9634042 461 +  83230942 ----------------------------ctttttttttttttt-----ggtagagacggggtttcttcatgtttgtcaggctgatctcagactcccgacctcaggtgatccgcccgcctcggcctccctgggtgctgggattgcaggcttgagtcaccgttcctggcccaatttattaattagaaaggaatagattggcctggagtggtggctcatgcttgtgatcccaggaatttggacgaccgagcgcggcggatcgcttgagcctaggagttccagacCAGCCTGGGCAACACGGTGAAACCCGGTCGCtttgtttttt-tgtttgtttgttttttgttt---------ttttgaggtagagtttcgcccttgttgcccaggctggagtgcagtggcgtggactcagctcactg-ggcctccgcctcccgggtttgggtggttctcctgcctcagcctcccgagtggctggaattgcaggtgtgaaccaccatgcct-gctaa
i panTro5.chr15             C 0 C 0
s macFas5.chr7              170281008 502 - 171882078 ctaatttcgttcttttttttttttttttttttttttttttttttttttggcacagacgaggtttctccatgttggtcaggctggtctcaaactcccgacctcaggttatccacctgcctcggcctcccgggatgctgggattgcaggcatgagccagcgcacAAGACCCAATTTATTAATCAGAAAGGAACAGATCGTcctggcacggcggctcacgcttgtgatcccaggactttggactgccaagcggggcggatcgcttgagcctaggagtt-aaggccggcctgggcaccatggtgaaattgagt--ctctGTttttt-gttttgttttgttttcgtttttgtttttgttttgagagggagcttcgctcttgttgcccaggatggagtttagtggcagggtctcagctccccgcagcctccgcctccagggtttgggtggttctcctcccacagcctcccgagtggctgggattgcaggcgtgagccaccacgcccggctaa
i macFas5.chr7              C 0 C 0
e nomLeu3.chr6               44485015   0 - 121039945 C
e panPan2.chr15              71430427 735 -  99763055 I
e gorGor5.CYUI01000141v1         3973   0 -    281578 C

a score=46998.000000
s hg38.chr15_KI270851v1_alt    243843 143 +    263054 ctttgtattt-tttgtttttttttttttagt--atagacgagtattctccacattggtcaggctggtctcaaactcccgactgcaggttatccacccgcctcggcctctcggggtggtgcgattccaggcataagcca--ctgtgacc
s panTro5.chr15               9634503 142 +  83230942 ctttgtattt-ttt-tttttttttttttagt--atggacgagtattctccacattggtcaggctggtctcaaactcccgacctcaggttatccacccgcctcggcctcccggggtggtgcgattccaggcgtgagcca--ccgtgacc
i panTro5.chr15             C 0 C 0
s nomLeu3.chr6               44485015 143 - 121039945 cttttttttt-tttttttttttttttttggt--agagacggagtttctccacgtttgtcaggctgatctcaaactcccgatctcaggggatccgcccatctcggcctcccggggtggcacgattccaggcgtgagcca--ccgtgaca
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              170281510 146 - 171882078 ttatgtatctatatatttttgttgttgttgttaagagatggggtttctccatgttgctcaggctggtctcaatgttctgacctcaggttatctgcccgcctcggcctcccctggtgctgggattgcaggcctgagccaGTCCCTAA--
i macFas5.chr7              C 0 C 0
e panPan2.chr15              71430427 735 -  99763055 I
e gorGor5.CYUI01000141v1         3973   0 -    281578 C

a score=83623.000000
s hg38.chr15_KI270851v1_alt    243986 114 +    263054 ggccCAATTTATTAATCAGAAAGGAACAGATTggcctggcgtggtggctcacgctggtgatcccagctgggactttggacggccgagcactgaggatcgattgagcctaggaga
s panTro5.chr15               9634645 114 +  83230942 ggccCAATTTATTAATCAGAAAGGAATAGATTggcctggcgtggtgactcacgcttgtgatcccagctgggactttggacggccgagcactgaggatcacttgagcctaggagt
i panTro5.chr15             C 0 C 0
s nomLeu3.chr6               44485158 114 - 121039945 ggccCAATTTATTAATCAGAAAGGAATAGATTggcctggcgtggtggctcacgcttgtgatcccagctgggactttggacggtggagctcggaggatcgcttgagcctaggagt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              170281656 110 - 171882078 GGCCCAGTTTATTAATCAGACAGGAATAGATCggcctggcgtggtggctcacgcttgggatccca----ggtctttggagggctgagcgtggcggatcgcttgagtctaagagt
i macFas5.chr7              C 0 C 0
s colAng1.NW_012115677v1      3027658 110 +   3749464 GGCCCAGTTTATTAATCAGACAGGAATAGATTGTcctggcgtggcggctcacgcttgggatccca----ggtctttggaaggctgagcgtggcggattgcttgagcctaggagt
i colAng1.NW_012115677v1    N 0 C 0
e panPan2.chr15              71430427 735 -  99763055 I
e gorGor5.CYUI01000141v1         3973   0 -    281578 C

a score=59665.000000
s hg38.chr15_KI270851v1_alt    244100 63 +    263054 tccagaccggcctgggcaacgtggtgaaaccggt---ct------tttttttttttttttgaggcagagttt
s panTro5.chr15               9634759 69 +  83230942 tccagaccggcctgggcaacgtggtgaaaccggt---ctcttttttttttttttttttttgaggcagagttt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         3973 63 -    281578 tccagaccggcctgggcaacgtggtgaaaccagt---ct------cttttttgtttttttgaggcagagttt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               44485272 59 - 121039945 tccagactggcctgggcaacatggtgaaaccggt---ct----------cttttttttttgaagcagagttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              170281766 62 - 171882078 tccagaccggcccgggcaacaaggggaaacctgg----t------cttttattcattcttgaggcggagttt
i macFas5.chr7              C 0 C 0
s colAng1.NW_012115677v1      3027768 66 +   3749464 tccagaccggcccgggcaacatggggaaacctagtctct------ctttttttcattcttgaggcggagttt
i colAng1.NW_012115677v1    C 0 C 0
e panPan2.chr15              71430427 735 -  99763055 I

a score=1985736.000000
s hg38.chr15_KI270851v1_alt    244163 1274 +    263054 cgctcttgttgcccaggctggagtgcagtggcccggtctcagctccccgtggcctccacctcccgggtttgggt-ggtcctcctgccttagcctcctgagtggctgggattgcaggcgtgagccaccatgccaagttaattttttatttttttatttttttggtagagactgggtttctccatgttggtcaggc---tggtctccagctcctcacctcaggtgatctgccggactccaccttctggggtgctgggattgcaggcgtgagtcactgcgcctgacccgacaccaggtctcttaacagaaaaacaaaacaaaaaccataaagattagcctggcctggtgggcccggcgggtagtcccagctactctgaaggctgatgtaggaggattgcttgagccagggggtggaggtggcagtgagccatgttggcactgctgcagtccagactgggcgacagagcgggacagtgtctcaggaaaa-gggaaaggaaaaaaaaaataaaGAAAAAGAAAGTATATAAAATTGCTAAATCAGGGAACAGCTTAAGAGTATATTATTGAGAGAAATAGAGGCAAAGGTGAGCAGACACCAATGTTCACTTAGT-GGAACTGCAGGTG-TCCCCAGACAGGAGGCTGCTATTTTTCCAAAAGAAATCTACCATTGACTTaaaaaaaaaaaaaaaaa---GTTGGTTTGTTACAATATACAAATAGCTACACTTTATATAGCCACCACCCTCTTCTAGCACTGCTCTAAGCCTTTTCCTGCTCTGAAAGAGCTACT---GTTACCTCCATTGTAGAAAAAACAGATGCCAGAGGTTGTTGTGGAAGGACCAGGGA----AACTATGAAATTTAC---TTGTACTTTTCAGACTTAAAGGTTCTTCCTGCTCTGCTCCATACACTGCAACATTGTAGTTAACATACCTCTTAAAATACTGGTCCTTTCTGTATTTGGAGGGACTCATCTTGCAGTGTGAAGTTTTTT-CTTGCACTAAGCATTTGGTCATAAGCTCATTTGCGTTTTATGTCAGGTTTAAGTACCTCTTCAGACATTGTTCAGTTAGGAATGTAAATATGAGCAAACAGGTATctgattgaaatagataacctag-aaaaaatcacttatgagaaagtcaagaaaatgtgaactctggatttgtggctattttcagaatgtattaattttttgatatttaatggcgttatgagtatatttatttttaaaaattccttgtcttctacagatacatataaggtaattttaaaaatgatatgata
s panTro5.chr15               9634828 1277 +  83230942 cgctcttgttgcccaggctggagtgcagtggcgtggtctcggctccctgcggcctccacctcccgggtttgggt-ggttctcctgcctcagcctcctgagtggctgggattgcaggcgtgagccaccatgcccagttagttttttatttttttatttttttggtagagactgggtttctccatgttggtcaggc---tggtctccagctcctcacctcaggtgatctgccggactccgccttctggggtgctgggattgcaggcgtgagttactgcgcctgacccgacaccaggtctcttaatggaaaaacaaaacaaaaaccataaagattagcctggcctggtgggcccggcgggcagtcccagctactctgaaggctgatgtaggaggattgcttgagccagggggtggaggtggcagtgagccatgatggcgctgctgcagtccagactgggcgacagagcgggactgtgtctcaggaaaa-gggaaaggaaaaaaaaa-taaagaaaaAGAAAGTATATAAAATTGCTAAATCAGGGAACAGCTTGACAGTATATTATTGAGAGAAATAGAGGCAAAGGTGAGCAGACACCAATGTTCACTTAGT-GGAACTGCAGGTG-TCCCCAGACAGGAGGCTGCTATTTTTCCAAAAGAAATCTACTACTGACTaaaaaaaaaaaaaaaaaa--aGTTGGTTTGTTACAATATACAAATAGCTACACTTTATATAGCCACCACCCTCTTCTAGCACTGCTCTAAGCCTTTTCCTGctctgaaatagctactattgttacctccattgtagagaaaacagatgccagagGTTGTTGTGGAAGGACCACGGA----AACTATGAAATTTAC---TTGTACTTTTCAGACTTAAAGGTTTTTCCTGCTCTGCTCCATACACTGCAACATTTTAGTTAACATACCTCTTAAAATACTGGTCCTTTCTGTATTTGGAGGGACTCGTCTTGCAGTGTGAAGTTTTTT-CTTGCACTAAGCATTTGGTCATAAGCTCATTTGCGTTTTATGTCAGGTTTAAGTACCTCTTCAGACATTGTTCAGTTAGGAATGTAAATATGAGCAAACAGGTATctgattgaaatagataacctag-aaaaaatcacttatgagaaagtcaagaaaatgtgaactctggatttgtggctattttcagaatgtattaattttttggtatttaatggcgttatgagtatatttatttttaaacattccttgtcttctacagatacatataaggtaattttaaaaatgatatgata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              71431162 1261 -  99763055 cgctcttgttgcccaggctggagtgcagtggcgcggtctcagctccccgtggcctccacctcccgggtttgggt-ggtcctcctgccttagcatcctgagtggctgggattgcaggcgtgagccaccatgccaagttagttttt--attttttatttttttggtagagactgggtttctccatgttagtcgggc---tggtctccatctcctcacctcaggtgatctgccggactccgccttctggggtgctggg---tcaggcgtgagtcactgcgcctgaccCGACACCAGGTTTCTTAACAGAAAAACAAAacaaaaaccataaagattagcctggcctggtgggcccggcgggtagtcccagctactctgaaggctgatgtaggaggattgcttgagccagggggtgaaggtggcagtgagccatgttggcgctgctgcagtccagactgggcgacagagcaggacagtgtctcaggaaaa-gggaaaggtaaaaaaaa-taaagaaaaAGAAAGTACATAAAATTGCTAAATCAGGGAACAGCTTAAGAGTGTATTATTGAGACAAATAGAGGCAAAGGTGAGCAGACACCAATGTTCACTTAGT-GGAACTGCAGGTA-TCTCTAGACAGGAGGCTGCTACTTTTCCAAAAGAAATCTACTACTGACTTAAAAAAAAAAAAAA------CTTGGTTTGTTACAATATACAAATAGCTAAACTTTATATAGCCACCACCCTCTTCTAGCACTGCTCTAAGCCTTTTCCTGCTCTGAAATAGCTACTAATGTTACCTCCATTGTAGAGAAAACAGATGCCAGAGGTTGTTGTGGAAGGACCACGGA----AACTATGAAATTTAC---TTGTAAGTTTCGGACTTAAAGGTTCTTCCTGCTCTGCTCCATACACTGCAACATTTTAGTTAACATACCTCTTAAAATACTGGTCCTTTCTGTATTTGGAGGGACTCATATTGCAGTGTGAAGTTTTTT-CTTGCACTAAGCATTTGGTCATAAGCTCATTTGTGTTTTATGTCAGGTTTAAGTACCTCTTCAGACATTGTTCAGTTAGGAATGTAAATATGAGCAAACAGGTATC----TGaaatagataacctagaaaaaaatcacttatgagaaagtcaagaaaatgtaaactctgaatttgtggctattttcagaatgt----attttttggtatttaatggcattatgagtatattcattttttaaaattccttgtcttctacagatacatataaggtaatttaaaaaatgatatgata
i panPan2.chr15             I 735 C 0
s gorGor5.CYUI01000141v1         4036 1256 -    281578 cgctcttgttgcccaggctagagtgcagtggcccggtttcggctcctcgcggcctccacctcccgggtttgttt-ggttctcctgcctcagcctcctgagtggctgggattgcaggcgtgtgccaccatgcccagttagttttt--------tatttttttggtagagactgggtttctccatgttggtcaggc---tggtctccagctcctcacctcaggtgatctgccggactccgccttctggggtgctgggattgcaggcatgagtcactgtgcctgacccgacaccaggtctcttaacggaaaaacaaaacaaaaaccataaagattagcctggcctggtgggcccggcgggcagtcccagctactctgaaggctgatgtaggaggattgcttgagcca-ggggtggaggtggcagtgagccatgatggcactgctgcagtccagactgggcgacagagcaggactgtgtctcaggaaaa-cagaaaggaaaaaaaa--taaagaaAAAGAAAGTATATAAAATTGCTAAATCAGGGAACAGCTTGACAGTATATTATTGAGAGAAATAGAGGCAAAGGTGAGCAGACACCAATGTTCACTTAGT-GGAACTGCAGGTG-TCCCCAGACAGGAGGCTCCTATTTTTCCAAAAGAAATCTACTATTGACTaaaaaaaaaaaaaaaaaaaaaGTTGGTTTGTTACAATATACAAATAGCTAAACTTTATATAGCCACCACCCTCTTCTAGCACTGCTGTAAGCCTTTTCCTGCTCTGAAG-AGCTACT---GTTACCTCCATTGTAGAGAAAACTGATGCCAGA-GTTGTTGTGGAAGGACCACGGA----AACTATGAAATTTAC---TTGTACGTTTCAGACTTAAAGGTTCTTCCTGCTCTGCTCCATACACTGCAACATTTTAGTTAACATACCTCTTAAAATACTGGTCCTTTCTGTATTTGGAGGGACTCATCTTGCAGTGTG-AGTTTTTT-CTTCCACTAAGCATTTGGTCATAAGCTCATTTGCGTTTTATGTCAGGTTTAAGTACCTCTTCAGACATTGTTCAGTTAGGAATGTAAATATGAGCAAACAGGTATctgattgaaatagataacctag-aaaaaatcacttatgagaaagtcaagaaaatgtgaactctggatttgtggctattttcagaatgtattaattttttg-tctttaatggtgt------tatatttatttttaaaaattccttgtcttctacagatacatataaggtaatttaaaaaatgatatgata
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               44485331 1267 - 121039945 cgctcttattgcccaggctggagtgcagtggcccggtctcggctccccactgcctccacctccctggtttgggt-ggttctcctgcctcagcctcctgagtgtctgggattgcaggtgtgagccaccatgcccagttagttttttattttttta-ttttttggtagagaccgggtttccccatgttggtcggtc---tggtctccagctcctcacctcaggtgatctgccggactccgccttctggggtgctgggattgcaggcgtgagtcactgtgcctgacccgacaccaggtatcttaacggaaaaacaaaataaaagccataaaaattagccgggtctggtgggcccggtgggtagtcccagctactctgaaggctgacataggcggattgctttagccagggagtggaggtggcagtgagccatgatggcgctgctgtagtccagactgggcgacagagtgggactgtgtctcaggaaaa-gggaaaggaaaaaaaa--TAACGAA----AAAGTATATAAAATTGCTAAATCAAGGAACAGCTTGACAGTATATTATTGAGAGAAATAGAGGCAAAGGTTAGCAGACATCAATGTTCGCTTAGT-GGAACTACAGGTG-TTCCCAGACAGGAGGCTGCTACTTTTCCAAAAGAAATCTACTATTGACTaaaaaaaaaaaaaaaaaaaaaGTTGCTTTGTTACAATACACAAATAGCTAAACTTTATATAGCCCCCTCCCTCTTCTAGCACTGCTCTAAGCCTTTTCCTGCTCTGAAATAGCTGCTATTGTTACCTCCATTGTAGAGAAAACAGATGCCAGAGGTTGTTGTGGAAGGACCACGGA----AACTCTGAAATCTAC---CTGTAAGTTTCAGACTTAAAGGTTCTTCCTACACTGCTCCTTACGCTGCAACATTTTAGTTAACATATCTCTTAAAATACTGGTCCTTTCTATATTTGAAGGGACTCATCTTGCAGTTTGAAGTTTTTT-CTTGCACTAAGCATTTGGTCATAAGCTCATTTGCATTTTATGTCAGGTTTAAGTACCACGTTAGACATTGTTCAGTTAGGAATGTAAATATGAGCAAACAGGTATctgattgaaatacataacctagaaaaaaatcacttatgagaaagtcaagaaaatgtgaactctggatttgtgactattttcagaatgtattaattttttggtatttaatggcattgtgaatatgtttattttaaaaaattatttgtcttctgtggatacatataa-------ttaaaaatgatatgatg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              170281828 1244 - 171882078 cgctcttgttgcccaggctggagtgcagtggcggggcctccgctccccgcggcctctgcctcctgggtttgggt-ggttctcttgcctcagcctcttgactgactgagattgcaggcgtgagccaccatgcccggttagttttttattt------tttattggtagagactgggatcctccatgttgctcgggctgttggtctccacctcctcccctcgggtgatccaccggccttggccttcgggggtgctggtattgcaggcatgagtcactgagtctggccccaaacccggtttc--aacgg--a---aaaacaaaaaccacaatgatgagcagagcgtggtgggcccggggggtagtcccagctactgtgaaggctgatggaggaggattgcttgagacc-ggggtggaggtggcagtgagccacgatggcgctgctgcagtccagactgggaaacagagagggactgtatctcaggaaaa-gggaaaggaaaaaaaa--GAA--------AAAGTAAATAAAACGGCTAAATCAAGGAACAGCTTGACAGTATGTTATTGAGAGAAACAGAGGCAAAGGTTAGCAGACACCAATGTTCACTTAGTGGGAACTGCAGGTGTTCCCTGGACTGGAGG-TGCTACTTTTCCAAAAGAAATCTGTTATTGACCAAAAAAAAAAGTAA-----------GTTTGTTACAATATACAAACAACTGAACTTTATATAGCCAGGACCCTCTTCTAGCACTGCTCTAAGCCTTTTCCTGctctgaaatagctactattgttaccgccattgtagagaaaacagatgccagaggtggttGTGGAAGGACCACGGAAAGGAACTATGAAATTGACTTGTTGTAAGTTTCTGACGGAAAGGTTCTTCCTGCTCTGCTCCTTACATTGCCACATTTTAGTTAACATCTCTCTTAAAATACTGGTCCTTTCTATATTTGGAGGGACTCCTCTTGCAGTTTCAAGTTTTTTCCTTGCATGAGGCATTTGGTCATAAGATCACCTGCATTTTCTGTCA-GTTTA-----------AGACATTGTTCAGTTAGGAATGTAAATATGAGCAAACAGGTATctgattgaaatagataacctag-aaaaaatcacttatgagtaagtcaagaacatgtgaactctagatttatggctatttcccgaatgtattacttttttggtatttaatggcattgcgaatatatttatttttaaaaattatttgtcttctacagatacatacacggtaat-taaaaaatgatatgatg
i macFas5.chr7              C 0 C 0
s colAng1.NW_012115677v1      3027834 1254 +   3749464 cgctcttgttgcccaggctggagtgcagtggcggggcctccgctccccgcggcctgtgcctcctggctttgggtgggttctcttgcctcagcctcttgagtgactgggattgcaggcgtgaaccaccatgcccggctagttttttattt------tttgttggtagagactgagattctccatgttggtcgggctgttggtttccagctactcccctcgggtgatcctctggccttggccttcgagggtgctggtattgcaggcatgagtcactgagtctggccccaaacgcggtttc--aacggaaa---aaaaaaaaaaccacaatgatgagcagggagtggtgggccccgggggtagtcccagctactgtgaaggctgatggaggaggattgcttgagact-gggctagaggtggaagtgagccatgatggcgctgcttcagtccagactgggaaacagagagggactgtgtctcaggaaaaggggaagggaaaaaaaa--gaa--------aaaGTAAATAAAATGGCTAAATCAAGGAACAGCTTGACAGTATGTCATTGAGAGAAACAGAGGCAAAGATTAGCAGACACCAATGTTCACTTAGTGGGAACTGCAGGTGTTCCCCGGACAGGAGGCTGCTACTTTTCCAAAAGAAATCTGTTATTGACaaaaaaaaaaaaaaaaa--------GGTTTGTTACAATATACAAACAACTAAACTTTATATAGCCAGGACCCTCTTCTAGCACTGCTCTAAGCCTTTTCCTGctctgaaatagctactattgttaccgccattgtagagaaaacggatgccagaggtggttGTGGAAGGACCACTGAAACTAACTATGAAATTGAC---TTGTAAGTTTCCGACTGAAAGGTTCTTCCTGCTCTGCTCCTGATATTGCCACATTTTAATTAACATCTCTCTTAAAATACTGGTCCTTTCTATATTTGGAGGGACTCCTCTTGCAGTTTCAAGTTTTTTCCTTGCAGGAGGCATTTGGTCACAAGATCACCTGCATTTTCTGTCA-GTTTAAGT------TTAGACATTGTTCAGTTAGGAATGTAAATATGAGCAAACAGGTATctggttgaaatagataacctag-aaaaaatcacttatgagtaagtctagaaaatgtgaactctggatttatggctatttcccgaatgtattacttttttggtatttaatggcattgcgaatatatttatttttaaaaattctttgttttctacagatacatatatggtaat-taaaaaatgatatgatg
i colAng1.NW_012115677v1    C 0 I 2

a score=148909.000000
s hg38.chr15_KI270851v1_alt   245437 84 +    263054 ta-------taggttttacttaaaaataattcagaggaagaaggaatgtatataaatgaagtgggaatacaaatggaacaaaacaggatgt
s panTro5.chr15              9636105 84 +  83230942 ta-------taggttttacttcaaaataattcagaggaagaaggaatgtatatacatgaagtgggaatacaaatggaacaaaacaggatgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71432423 84 -  99763055 ta-------taggttttacttcaaaataattcagaggaagaaagaatgtatataaatgaagtgggaatacaaatggaacaaaaCAGGATGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        5292 84 -    281578 ta-------taggttttacttcaaaataattcagaggaagaaggaatgtatataaatgaagtgggaatacaaatggaacaaaacaggatgt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44486598 84 - 121039945 ta-------tacgttttacttcaaaataattcagaggaagaaggaatgtatataaatgaagtgggaatacaaatggaacaaaacaggatgt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               1688859 91 + 171882078 tataggttttaggttttacttcaaaataattcagaggaagaaggaatgtatataaatgaagtgggaatataaatgaaacaaagctggctgt
i macFas5.chr7              n 0 I 289
s colAng1.NW_012115677v1     3029090 84 +   3749464 ta-------taggttttacttcaaaataattcagaggaagaaggaatgtatataaatgaagtgggaatataaatgaaacaaagctggctgt
i colAng1.NW_012115677v1    I 2 C 0

a score=13779.000000
s hg38.chr15_KI270851v1_alt    245521 7 +    263054 ggccagg
s panTro5.chr15               9636189 7 +  83230942 ggccagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              71432507 7 -  99763055 GGCCAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         5376 7 -    281578 ggccagg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               44486682 7 - 121039945 ggccagg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              170283072 7 - 171882078 ggccggg
i macFas5.chr7              C 0 C 0
s colAng1.NW_012115677v1      3029174 7 +   3749464 ggccagg
i colAng1.NW_012115677v1    C 0 C 0

a score=318149.000000
s hg38.chr15_KI270851v1_alt    245528 282 +    263054 tgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcaaatcacctgatgtcaggagttcaagaccagcctggccaacgtggtgacaccccatctctactaaaaatac-aaaaattagccggatgttgtgacgggtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcagaagtttcagtaagtcaagatcatgccactgcactccagcctgggcaaccacagcaaaagcccacctttaaaaa
s panTro5.chr15               9636196 282 +  83230942 tgtggtggctcacgcctgtaatcccagcactttgggagcccgaggcgggcaaatcacctgatgtcagcagttcaagaccagcctggccaacgtggtgaaaccccatctctactaaaaatac-aaaaattagccggatgttgtgacgggtgcctgtaatcctagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcagaagtttcagtaagtcacgatcatgccactgcactccagcctgggcaaccacagcaaaagcccacctttaaaaa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         5383 281 -    281578 tgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcaaatcacctgatgtcaggagttcaagaccagcctggccaacgtggtgaaaccccatctctactaaaaatac-aaaaattagccggatgttgtgatgggtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcagaagtttcagtaagtcaagatcatgccactgcactccagcctgggcaaccacagcaaaagcccaccttt-aaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               44486689 282 - 121039945 tgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgggcggatcacctgatgtcaggagttcaagaccagtctggccaatgtggtgaaaccccatctctactaaaaatac-aaaaattagccgggtgtggtgacgggtgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcaaaagtttcagtaagccaagatcatgccactgcactccagcctgggcaaccacagcaaaaccccaccttaaaaaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              170283079 279 - 171882078 cgcggtggctcatgcctgtaatcccagcactttgggaggctgagacaggcagatcac--gagatcaggatattgagaccatcctggctaacaccgtgaaaccccgtctctactaaaaatacaaaaaagtagccaggcgaggtggc-ggcacctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgggcctgggaggcagagcttgcagtgagccgacgtcgcgccactgcactccagcctgggc-gacagagcaagactctgtctcaaaaga
i macFas5.chr7              C 0 C 0
s colAng1.NW_012115677v1      3029181 282 +   3749464 agcagtggctgacatctgtaatcccagcactttggaaggccaaggcaggcagatgacctgaggtcaggagtccaagaccagcctggccaacgtggtgaaaccccatctctagtaaaaatac-aaaaattatccggatgtggtgccaggcacctgtaatcccagctactcgggaggctgaggcaggagaactgcttgaacccaggaggcagaagttgcagtgagccaagatcatgccactgcactccagcctgggcaaacacagcaaaaccccacctttaaaaa
i colAng1.NW_012115677v1    C 0 C 0
e panPan2.chr15              71432514   0 -  99763055 C

a score=155449.000000
s hg38.chr15_KI270851v1_alt   245810 155 +    263054 aaaaagcaaaacaaaaactggccatgccatgaatgaaaaattgttgatgatgtatgtatgtagggcagttatattatttttcttaactttttttaggtttgaaactttttatTGAACACATGCAAACATCCCTTGATAACTGGGGCTGCTTCCCC
s panTro5.chr15              9636478 154 +  83230942 aaaatacaaaacaaaaactggccatgccatgaatgaaaaattgttgatgatgtatgtatgtagggcagttatattatttttcttga-tttttttaggtttgaaactttttatTGAACACACGCAAACATCCCTTGATAACTGGGGCTGCTTCCCC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        5664 155 -    281578 aaaatacaaaacaaaaactggccatgccatgaatgaaaaattgttgatgatgtatgtatgtagggcagttatattatttttcttgactttttttaggtttgaaactttttatTGAACACATGCACACATCCCTTGATGACTGGGGCTGCTTCCCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44486971 150 - 121039945 aa-----aaaacaaaaactgtccatgccatgaatgaaaaattgttgaTAATGTGTAGGCGTGAGCCACCGCGACCGGCCTTCTCAACATTTTTTAGGTTTGAAACTTTTTATTGAACACATGCACATGTCCCTTGATAACTGGGGCTGCTTCCCC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               1689239 147 + 171882078 -----acaaacaaaaagctggccatgccatgaatgaaaaattgttgatgatgtgtatatgtagggca---atattaattatctcaactttttttaggtttgaaactttttatTGAACACATGCACACATACCTTGATAACAGGGGCTACTTCCCC
i macFas5.chr7              I 289 C 0
s colAng1.NW_012115677v1     3029463 141 +   3749464 ---------acagaaagttggccatgccatgaatgaaaaattgttgatgatgtgtgtatgtagggca---atattaattatctcaactttttttaggtttcaagctttttatTGAACACGTGCACACATACCTTGATAAC--GGGCTACTTCCCC
i colAng1.NW_012115677v1    C 0 C 0
e panPan2.chr15             71432514   0 -  99763055 C

a score=80488.000000
s hg38.chr15_KI270851v1_alt   245965 114 +    263054 ATTATTCTCATAGTAGcccttctgattttcacttcatcttcattcttagagattctggattttttttttttttttttggcaagatcaaatatgtctt------tgcaaggaccatccaga
s panTro5.chr15              9636632 118 +  83230942 ATTATTCTCGTAGTAGCCTTTCTGATTTTCACTTCGTCTTCATTCTTAGAGACTCTGGATTTTTTTTTTTTTTTT--GGCAAGTTCAAGTATGTCTTGATCTTTGCAAGGACTATCCAGC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        5819 110 -    281578 ATTATTctcgtactagcccttctgattttcacttcatcttcattcttagagattctggatttttttttttttt----ggcaagatcaaatatgtctt------tgcaaggactatccaga
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44487121 107 - 121039945 ATTATTCTCACAGCAGcccttctgattttcacttcatcttcattcttagagattctggattttttttttt-------ggcaagttcaaatatgtctt------tgcaaggactatccagc
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012115677v1     3029604 107 +   3749464 ATTATTCTCACAGTAGCC-TTCTGATTTTCACTTCATCTTCATTCTCAGAGAGTCTGGATTTTTCTTTTAT------GGCAAGTTCAAGTATATCTT------GGCAAGGACtatccagc
i colAng1.NW_012115677v1    C 0 C 0
e panPan2.chr15             71432514   0 -  99763055 C
e macFas5.chr7               1689386   0 + 171882078 C

a score=60460.000000
s hg38.chr15_KI270851v1_alt   246079 60 +    263054 atgtctattttatgacggaggctttgcagagtacctactcagccatattatcagaaacag
s panTro5.chr15              9636750 34 +  83230942 ATGTCCA--------------------------CCTACTCAGCCATATTATCAGAAACAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        5929 60 -    281578 atgtctattttatgacagaggctttgcagagtacctactcagccatattatcagaaacag
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44487228 60 - 121039945 atgtctattttatgagaaaggctttgcagagtacctactcagccatattatcagaaacag
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               1689386 60 + 171882078 ATGTCTATTTTATGAGAGAGGGTTTGCAGAGCACCTACTCAGCCATATTATCAGAAACAG
i macFas5.chr7              C 0 n 0
s colAng1.NW_012115677v1     3029711 60 +   3749464 atgtctattttatgagagagggtttgcacagtacctactcagccatattatcaaaaacag
i colAng1.NW_012115677v1    C 0 C 0
e panPan2.chr15             71432514  0 -  99763055 C

a score=1834867.000000
s hg38.chr15_KI270851v1_alt    246139 1547 +    263054 aaatATTTTCCATATTCTTGTCTTGTCCTG-TTTAGATTTTTTAAATTCCAAGAACAGTCACCTTCTACCACACACTCTGATGTTGGAAGACAAAGCATATTTTGTAAGTGGCATGATTTCTGGGCTCAAATTTAGAACAGAGCCACAGCTTTCAACAACCAAAAAATAACTTACTGTGACTCACCAAATTTAGAAAGATGGGGATTATTATAAAAAGAAAACCTTAATTTACTATGTGACCTCTAAGTATCTGGGCTGAAAATTGTAAAGATAGAAAGGTAAATCAAAAGATATAGAGACTGTAATCATGCACTTAATGAAGCACTAAATCAAAATATATTTGGCATACGTGAAAGAGTTTAATTTTATCAC----ATTTTTTACTGGCACTATAGCTATTTGCAAGTACATATAAAACTACAGTGTTACATATAAACTACCAAAAAAGAACTTTTTAAGAAATGAGACTCATCTAGCAACTTTATTTAAAAGTTTATCTTAGGGGAATAATTAAGGATGGCCATACAAAAGGATTTAGCCATGACGCGAGAATGTTCTCCCTGGCAAACCAATGGAAATTATTAAATGTGCAAAATGGAACTGTTGGAATAAATTCTAATGCCTTCATATGATCGTATATT-TAACCTTTTAAAATGATATTGAAGAGTTGCATACATTGACTTAAACACACATTTGTAACACATCACTGAATAGGAGAAATATGGGCCAGCAAAGAACATAGAGTTGGTCCAATTTCTAC-AAAAA-AAAGAAGACTCTAATAGCATGACAGCAGGGAAGGGGGActatgtcaacgtatg--tgtgtatatgtatgt--atatgcatagcaagcatgaacttgaaaagatatatttcaaattgtttacacagattacctcagagaggTAAATAACTTTGGACTTTGGTGTTCTGTATTCCACATGCTCTGAATTTTCCTTTTTTATTTAAATAGAGATGGGATCTTAgccaggagcagtggctcacccctgtaatcccagcactttgggagg-----------------------------------------------------------------------------ctgaggagggcggattgtttgagg-caggagttcaagaccaatctggccaacacggcaaaactctgtctcaactaaaaattcaaaaattagccaggggcgcagtggctcatgcctgtaaccccagacactcgagagactg-aggcatgagaattgcttgaaccaggaggcagaggttgccgtgagccgagatcacaccacggcactccagcctgggcaacagaccaagactctgtcAAaaaacaaaacaaaacaaaacaa-aacaaCAACCACAACAACAAAACAGTAATAAAGAG-AAAACCTAATggacaggagcaatgtctcgtgcctgtaatcccagtgctttgggaggccaagatgggagaattacttgaggccaggagttcaagaccagcattggcaacatagtaagaccttttctctacaaaaaaattt-aaaaattagccaggcatagtagtgcatgcttatactcccagctacctgggaggctgaggtgggaggatcacttgagcctaagagttggaggt
s panTro5.chr15               9636784 1538 +  83230942 AAAAAGTGTCCAGATTCTTGTCTTTTCCTG-TTCAGGTTTTTTAAATTCCAAGAACAGTCACCTTCTACGGGACACTCTGATGTTGGAAGACAAAGCATATTTCGTAAGTGGCATGATTTCTGGGCTCCAATTTAGAACAGAGCCACAGCTTTCAACAACCCAAAAATAACTTACTGTGACTCACCAAATTTAGAAAGATGGAGATTATTATAAAAAGAAAACCTTAATTTATTATGTGACCTCTAAGTATCTCGGCTGAAAATTGTAAAGGTGGAAAGGTAAATCAAAAGATACAGAGACTGTAATCATGCACTTAATGAAGCACTAAATCAAAATATTTTTGGCATATGTGAAAGAGTTTAATTTTATCAC----ATTTTTTACTGGCACTATAGCTATTTGCAAGTACATATAAAACAACAGTGTAACATATAAACTACCAAAAAAGAACTTTTTAAGAAATGAGACTCATCTAGCAACTTTATTTAAAAGTTTATCTTCAGGGAATAATTAAGGATGGCCGTACAAAAGGATTTAGCCATGGCATGAGAATGTTCTCCCTGGCAAATCAATGGAAATTATTAAATGTGCAAAATGGAACTGTTGGAATAAATTCTAATGCCTTCATATGATCGTATATT-TAACCTTTTAAAATGATATTGAAGAGTTGCATACATTGACTTAAACACATATTCATAACACATCACTGAATAGGAGAAATATGGGCCAGCAAAGAACATAGAGTTGGTCCAATTTCTAC-AAAAA-AAAGAAGACTCTAATAGCATGACAGCAGGGAAGGGGGACTATGTCAACGTATG--TGTGTAGATGTATGT--ATATGCATAGCAAGCATGAACTTGAAAAGATATATTTCAAATTGTTTACACAGATTACCTCAGAGAGGTAAATAACTTTGGACTTTGGTGTTCTGTATTCCACATGCTCTGAATTTTCTTTTTTTATTTAAATAGAGATGGGATCTTAgccaggagcagtggcccacccctgtaatcccagcactttgggagg-----------------------------------------------------------------------------ctgaggagggcggattgtttgagg-caggagttcaagaccaatctggccaacacggcacaactctgtctcaactaaaacttcaaaaattagccaggggcgcagtggctcatgcctgtaaccccagacactcgacagactg-aggcatgagaattgcttgaaccaggaggcagaggttgcagtgagccgagatcacaccacggcactccagcctgggcaacagaccaagactctgtcaa----------aaaacaaaacaa-aacaacaaccacaacaacaaaacaGTAATAAAGAGAAAAACCTAATggacaggagcaatgtctcgtgcctgtaatcccagttctttgggaggccaagatgggagaattgcttgaggccaggagttcaagaccagcattggcaacatagtaagaccttttctctacaaaaaaattt-aaaaattagccaggcatagtagtgcatgcttatactcccagctacctgggaggctgaggtgggaggatcacttgagcctaagagttggaggt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         5989 1535 -    281578 aaatATTTTCCATATTCTTG-----TCCTG-TTTAGATTTTTTAAATTCCAAGAACAGTCACCTTCTACCAGACACTCTGATGTTGGAAGACAAAGCATATTTTGTAAGTGGCATGATTTCTGGGCTCAAATTTAGAACAGAGCCACAGCTTTCAACAACCCAAAAATAACTTACTGTGACTCACCAAATTTAGAAAGACGGAGATTATTAAAAAAAGAAAACCTTAATTTACTATGTGACCTCGAAGTATCTGGGCTGAAAATTGTAAATGTAGAAAGGTAAATCAAAAGATACAGAGACTGTAATCATGCACTTAATGAAGCACTAAATCAAAATATTTTTGGCATACGTGAAAGAGTTTAATTTTATCAC----ATTTTTTACTGGCACTATAGCTATTTGCAAGTCCATATAAAACTACAGTGTTACATATAAACTACCAAAAAAGAACTTTTTAAGAAATGAGACTCATCTAGCAACTTTATTTAAAAGTTTATCTTCAGGGAATAATTAAGGATGGCCGTACAAAAGGATTTAGCCATGGCATGAGAATGTTCTCCCTGGCAAACCAATGGAAATTATTAAATGTGCAAAATGGAACTGTTGGAATAAATTGTAATGCCTTCATATGATCGTATATT-TAAGCTTTTAAAATGATATTGAAGAGTTGCATACATTGACTTAAACACACATTCGTAACATATCACTGAACAGGAGAAATATGGGCCAGCAAAGAACATAGAGTTGGTCCAATTTCTACAAAAAA-AAAGAAGACTCTAATAGCATGACAGCAGGGAAGGGGGActatgtcaacgtatg--tgtgtatatgtgtgt--atatgcatagcaagtatgaacttgaaaagagatatttcaaattgtttacacagattacctcagagaggTAAATA-------ACTTTGGTGTTCTGTATTCCACATGCTCTGAATTTTCTTTTTTTATTTAAATAGAGATGGGATCTTAgccaggagcagtggctcacccctgtaatcccagcactttgggagg-----------------------------------------------------------------------------ctgagg-gggaggattgtttgagg-caggagttcaagaccaatctggccaacacggcaaaactctgtctcaactaaaaattcaaatattagccaggggtgcagtggctcatgcctgtaaccccaggcactcgagagactg-aggcatgagaattgcttgaaccaggaggcagaggttgcagtgagccgagatcacaccacggcactccagcctgggcaacagaccaagactctgtcaaaaaacaaaacaaaagaaaacaa-aacaacaaccacaacaacaaaacaGTAATAAAGAG-AAAACCTAATggacaggagcaatgtctcatgcctgtaatcccagtgctttgggaggccaagatgggagaattgcttgaggccaggagttcaagaccagcattggcaacatagtaagaccttttctctacaaaaaaatgt-aaaaatcagccaggcatagcagtgcatgcttatactcccagctacctgggaggctgaggtgggaggatcacttgagcctgagagttggaggt
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               44487288 1547 - 121039945 aaatATTTTCCAGATTCTTGTCTTGTCCTG-TTTAGGTTTTTTAAATTCCAAGAACAGTCACCTTCTACCAGACACTCTGATGTTGGAAGACAAAGCATATTTTGTAAGTGGCATGATTTCTGGACTCCAGTTTAGAACAGAGCCACAGCTTTCAACAACCCAAAAATAACTTACTGTGACTCACCAAATTTAGAAAGATGGAGATTATTAAAAAAAGAAAACCTTAATTTACTATGTGACCTCTAAGTATCTGGGCTGAAAATTGTAAAGATAGAAAGGTAAATCAAAAGATATAGAGACTGTAATCATGCACTTAATGAAGCGCTAAATCAAAATATTTTGGGCATACATGAAAGAGTTTAATTTTATCAC----ATTTTTTACTGGCACTATAGCTATTTGCAAGTACATATAAAACCACAGTGTTACACATAAACTACCAAAAAAGAACTTTTTAAGAAATGAGACTCATCTAGCAACTTTATTTAAAAGTTTATCTTCAGGGAATAATTAAGGATGGCCGTACAGAAGGATTTAGCCATGGCATGAGAATATTCTCCCTGGCAAACCAATGGAAATTATTAAATGTGCAAAAGGGAACTGTTGGAATAAATTGTAATGCCTTCATATGATCGTATATT-TAATCTTTTAAAATGATATTGAACAGTTGCATAAACTGACTTAAACACACATTCGTAACACATCACTGAATAGGAGAAATATGGGCCAGCAAAGAACATAGAGTTGGTCCAATTTCTAC-AAAAA-AAAGAAGACTCTAATAGCATGACAGCAGGGAAAGGGGAATATGTCAAtgtatg--tgtgtatatgtatgt--atatgcatagcaagtatgaacttgaaaggatatatatcaaattgtttacacagattaccccagagaggTAAATAACTTTGGCCTTTGGTGTTCTGTATTCCACATATTCTGAATTTTCTTTTTTTATTTAAATAGAGATGGGATCTTACccaggagcagtggctcacacctgtaatcccagcactttgggagg-----------------------------------------------------------------------------gtgagaagggcagattgtttgaggccaagagttcaagaccaatctggccaacacagcaaaactctgtctccactaaaaattgaaaaattagcca--ggtgcagtggctcatgcctgtaaccccaggtactcgagagactg-aggcatgagaattgcttgaaccaggaggcagaggttgcagtgagccgagatcgcaccactgcactccagcctggacaacagaccaagactctgtcAAAAaacaaaacaaaacaaaacaacaaccacaacaacaacaacaaaacaGCAATAAAGAG-AAAACCTAATggacaggagcgatgtctcatgcctggaatcccagtgctttgggaggccaacatgggagaatcacttgaggccaggagttcaagaccagcatgggcaacatagtaagaccttttctctacaaaaaaattt-aaaaattagccaggcatactagtgcatgcttatactctcagctacctgggaggctgaggtgggaggatcacttgagcctgagagttggaggt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              170283358 1524 - 171882078 aaaTATTTTCCAGATTCTGTTCCTGTCCTGTTTTAGATTTTTTAAGTTCCAAGAACTGTCACCTTCTACCGGACACTCTGATGTTGGAAGACAAAGCATATTTTGTAAGTGGCATGATTTCTGGGCT-AAATTTAGAACAGAGCCACAGCGTTCAACAACCCCAAAATAACTTATTGTGACTCACCAAATTAAGAAAGATGGAGATTATTAAAAAAAGAAAACCTTAATTTACTATGTGACCTCTAAGTGTCTCGGCTGAAAATTGTAAAGATAGAAAGGTAAATCAAAAGATATAGAGACTGTAATCATGCACTTAATGAAGCGCTAAGTCAAAATATTTTTGGCATATGTTAA--AGTTTTATTTTATCAC-TTTTTTTTTTACAGGAACTATAGCTATTTGCAAGTACATATAAAACTACAATGTTACATATAAACtacgaattaagaactttttaagaaatgagactaatctagcaagtttatttaaacgtttaacttaagagaataattaaggatgtccatacaaaaggatttagccgtgacatgagaatgttcaccctggcgaatcaatggaaattattaaatgtgcaaaagttaactgttggaataaattgtaataccttcatatgatcgtatatcataaccttttaaaatggtattaaagagttgcataaattgacttaaacacatattcgtaacacatcactgaataggagaaatacaggccagcaaagaacatagagttggtccactttctac-aaaac-aaaGA-----CTAATAGCACGACAGCAGGGAAGGGGGAatgtgtcaacgtatacttgtgtacatgtgtatacatatgcgtagcaagtaggaacttgaaaggatagatatcaaattgtttacacagattacctcagagaggTACATAACTTTGGCCTGTGGTGTTGTGTATTCCACATATTCTGAATTTTCTTCTTTTATTTAAACAGAGACGGGTTCTTAgccaggagcagtggctcacacatgtaatcccagcactttgggagg-----------------------------------------------------------------------------ctgaggagggcgcattgcttgaggccaggagttggagaccaatctggccaacatggcaaaactctgtctctactaaatattcaaaaattagcca--ggtgcagtggctcatacctgtaacc---------cgggaggctacaggcatgagaattgcttgaaccaggaggcggaggttgcagtgagctgagattgcaccactgcactccagtctgggaaacagaccaagactctctcaa----------------caacaacaacaacaacaa-aacaacaaaacagaaataaagag-aaaaCCTTATGGACCAGAgcaatgtctcatgcctgtaatcccagtgctttgggaggtcaagatgggagaatcgcttcaggccaggagttcaagaccagcatgagcaacatagcaagaccttttctctacaaaaaaatttaaaaaactagccaggcatagtagtgcatgcttatactcccagctacctgggaggctgaggtgggaggatcacttgagcatgagaggtggaagt
i macFas5.chr7              C 0 C 0
s colAng1.NW_012115677v1      3029771 1602 +   3749464 aaatATTTTCCAGATTCTGTTCCTGTCCTGTTTTAGATTTTTTAAGTTCCAAGAACTGTCACCTTCTACCAGACACTCTGATGTTGGAAGACAAAGCATATTTTGTAAGTGGCATGATTTCTGGGCTCAAATTTAGAACAGAGCCACAGCTTTCAACAACCCCAAAATAACTTATTGTGACTCACCAAATTTAGAAAGATGGAGATTATTAAAAAAAGAAAACCTTAATTTACTATGTGACCTCTAAGTGTCTCCGCTGAAAATTGTAAAGATAGAAAGGTAAATCAAAAGATATAGAGACTGTAATCATGCACTTAATGAAGCGCTAAGTCAAAATATTTTTGGCATATATTAA--AGTTTAATTTTATCACTTTTTTTTTTTACAGGAACTATAGCTATTTGCAAGTACATATAAAACTACAATGTTACATATAAACTACCAATTAAGAACTTTTTAAGAAATGAGACTAATCTAGCAACTTTATTTAAATGTTTAACTTAAGGGAATAATTAAGGATGTCCATACAAAAGGATTTAGCCGTGACATGAGAATGTTCACCCTGGCAAATCAATGGAAATTATTAAACGTGCAAAAGGGAACTGTTGGAATAAATTGCAATACCTTCATATGATCATATATCATAACCTTTTAAAATGGTATTAAAGAGTTGCATAAATTGACTTAAACACATATTCGTAACCCATCACTGAATAGGAGAAATACAGGCCAGCAGAGAATATAGAGTTGATCCACTTTCTAC-AAAACAAAAGA-----CTAATAGCACGACAGCAGGGAAGGGGGAatgtgtcaaggtatacttgtgtatatgtgtat--atatgcatagcaagtaggaacttgaaaggatatatatcaaattgtttacacagattacctcagagaggTAAATAACTTTGGCCTTTGGTGTTCTGTATTCCACATATTCTGAATTTTCTTCTTTTATTTAAACAGAGACGGGTTCTTAgccaggagcagtggctcacacgtgtaatcccagcacttcgggaggctgaggagggtggattgcttgaggccaggagctggagaccaATCtggccccacgtgtaatcccagcacttcgggagactgaggagggtggattgcttgaggccaggagctggagaccaatctggccaacacggcaaaactctgtctctactaaatattcaaaaattagcca--ggtgcagtggctcatacttgtaacc---------cgggaggctataggcatgagaattgcttgaaccaggaggcggaggttgcagtgagctgagattgcaccactgcactccagtctgggaaacagaccaagactttctcaa----------------caacaacaacaacaacaacaaaaaaaaaACAGTAATAAAGAG-AAAACCTTACggacaggagcaatgtctcatgcctgtaatcccagtgctttgggaggtcaagatgggagaatcacttcaggccaggagttcaagaccagcacgggcaacatagcaagaccttttctgtacaaaaaaattt-aaaaactagccaggcatagtagtgcatgcttatactcccagctacctgggaggctgaggtgggaggatcacttgagcatgagagttggaggt
i colAng1.NW_012115677v1    C 0 C 0
e panPan2.chr15              71432514    0 -  99763055 C

a score=4827.000000
s hg38.chr15_KI270851v1_alt    247686 3 +    263054 tgc
s panTro5.chr15               9638322 3 +  83230942 tgc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1         7524 3 -    281578 tgc
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6               44488835 3 - 121039945 tgc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              170284882 3 - 171882078 tgc
i macFas5.chr7              C 0 N 0
s colAng1.NW_012115677v1      3031373 3 +   3749464 tgc
i colAng1.NW_012115677v1    C 0 C 0
s otoGar3.GL873533           30943544 3 +  31380117 TGA
i otoGar3.GL873533          N 0 C 0
e panPan2.chr15              71432514 0 -  99763055 C

a score=2641.000000
s hg38.chr15_KI270851v1_alt   247689 3 +    263054 agt
s panTro5.chr15              9638325 3 +  83230942 agt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        7527 3 -    281578 agg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44488838 3 - 121039945 agt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              91223385 3 - 171882078 AAT
i macFas5.chr7              N 0 C 0
s colAng1.NW_012115677v1     3031376 3 +   3749464 agt
i colAng1.NW_012115677v1    C 0 C 0
s otoGar3.GL873533          30943547 3 +  31380117 GAT
i otoGar3.GL873533          C 0 C 0
e panPan2.chr15             71432514 0 -  99763055 C

a score=7654.000000
s hg38.chr15_KI270851v1_alt   247692 15 +    263054 aagctgtgatcatac
s panTro5.chr15              9638328 15 +  83230942 aagctgtgatcatac
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        7530 15 -    281578 aagctgtgatcacac
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44488841 10 - 121039945 gagctgCA-----AC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              91223388 15 - 171882078 AAACAGGAGTCGCAT
i macFas5.chr7              C 0 C 0
s colAng1.NW_012115677v1     3031379 15 +   3749464 gagctgcgatcacac
i colAng1.NW_012115677v1    C 0 C 0
s otoGar3.GL873533          30943550 15 +  31380117 AAACAGGAGCCGCAT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5822431 11 -  61074082 AAGTTGTGAGT----
i canFam3.chr9              N 0 C 0
e panPan2.chr15             71432514  0 -  99763055 C

a score=6600.000000
s hg38.chr15_KI270851v1_alt   247707 1 +    263054 c
s panTro5.chr15              9638343 1 +  83230942 c
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        7545 1 -    281578 c
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44488851 1 - 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8425094 1 + 169600520 C
i rheMac8.chr7              N 0 C 0
s macFas5.chr7              91223403 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      404675 1 -   9617498 C
i macNem1.NW_012017799v1    N 0 C 0
s cerAty1.NW_012001627v1     4957275 1 +  14009840 C
i cerAty1.NW_012001627v1    N 0 C 0
s colAng1.NW_012115677v1     3031394 1 +   3749464 c
i colAng1.NW_012115677v1    C 0 C 0
s aotNan1.NW_018502759v1     9384278 1 +  14477005 C
i aotNan1.NW_018502759v1    N 0 C 0
s otoGar3.GL873533          30943565 1 +  31380117 C
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5822442 1 -  61074082 C
i canFam3.chr9              C 0 C 0
e panPan2.chr15             71432514 0 -  99763055 C

a score=705070.000000
s hg38.chr15_KI270851v1_alt   247708 107 +    263054 acCAGAGAGCCACGACCCCATCCCCGCCTCCTTCCTCTGTCCTACGCTAGCAATAAATAAGTTTCC-CAGCCACAAATAATTATTAGAACCTCCT---------------------------------------CCCCATGTGACAG
s panTro5.chr15              9638344 107 +  83230942 acCAGAGAGCCACGACCCCATCCCCGCCTCCTTCCTCTGTCCTATGCTAGCAATAAATAAGTTTCC-CAGCCACAAATAATTATTAGAACCTTCT---------------------------------------CCCCATGTGACAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        7546 107 -    281578 acCAGAGAGCCACGACCCCATCCCCGCCTCCTTCCTGTGTCCTATGCTAGCAATAAATAAGTTTCC-CAGCCACAAATAATTATTAGAACCTCCT---------------------------------------CCCCATGTGCCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44488852 106 - 121039945 ACCAGAGAGCCACGACCCCATCCCCGCCTCCTTCCTCTGTCCTATGCTAGCAATAAATAAGTTTCC-CAGCCACAAATAATTATTAGAACCTCCT----------------------------------------CCCATGTGCCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8425095 106 + 169600520 ACCAGGGAGCCACGACCCCATCCCCGCCTCCTTCCTCTGTCCTATGCTAGCAATAAATAAGTTT-C-CAGCCACAAATAATCATTAGAACCTCCT---------------------------------------CCCCATGTGCCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91223404 107 - 171882078 ACCAGGGAGTCACGACTCCATCCCCTCCTCCTTCCTTTGTCCTATGCTAGCAATAAATAAGTTTCC-CAGCCACAAATAATTATTAGAACCTCCT---------------------------------------CCCCATGTGTCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      404676 107 -   9617498 ACCAGGGAGTCACAACTCCATCCCCTCCTCCTTCCTCTGTCCTATGCTAGCAATAAATAAGTTTCC-CAGCCACAAATAATTATTAGAACCTCCT---------------------------------------CCCCATGTGTCAG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4957276 107 +  14009840 ACCAGGGAGTCACGACTCCATCCTCTCCTCCTTCCTCTGTCCTATGCTAGCAATAAATAAGTTTCC-CAGCCACAAATAATTATTAGACCCTCCT---------------------------------------CCCCATGTGCCAG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7571683 103 +  58131712 ACCAGGGAGCCACAACCTCATCCCCACCTCCTTTCTCTGTCCTATGCTATC----AATAAGTTTCC-CAGATGCAAATAATGATTAGAACCTCCT---------------------------------------CCCCATATGCCAG
i chlSab2.chr26             N 0 C 0
s colAng1.NW_012115677v1     3031395 107 +   3749464 acCAGGGAGCCACGACCCCATCCCCGCCTCCTTCCTCTGTCCTATGCTAGCAATAAATAAGTTTCC-CAGCCACAAATAATTATTAGAACCTCCT---------------------------------------CCCCATGTGCCAG
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1     1002379 107 -   1842816 ACCAGGGAGCCACGACCCCAACCCTGCCTCCTTCCTCTGTCCTCTACCATCAATAAACAAATTTCC-CAGCTGCAAATAATTATTAAAACCTCCT---------------------------------------CCCCATGTGCCAG
i cebCap1.NW_016107745v1    N 0 C 0
s aotNan1.NW_018502759v1     9384279 106 +  14477005 ACCAGGGCGCCACGACCCCATCCCCGCCTCCTT-CTCTGTCCTATGCTATCAATAAATAAGTTTCC-CAACCCCAAATAATTATTAGAACCTCCT---------------------------------------CCCCATGTGCCAG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30943566 141 +  31380117 ACCAGGGTGCCACAACCACCTCCCCACAGCCTTCCT-----CTCTACTATCAATAAATAAGTTTCC-CAGCCCCAAATAATTATTAGAAACTCCTCCCCATTTTTTTAAAGGTCATCATAGTTCCAGACCCCTTCCCCATCTGCCAG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5822443 105 -  61074082 ACCTGGG---CGGAACCCCGTCCCCGCCTCCTTCCTCTGTCCTATGCTATCAATAAATAAGTTTCCTCATCCCCAAATATTTAATAGAACTTCCT---------------------------------------CCCCATTTGCCAG
i canFam3.chr9              C 0 C 0
e panPan2.chr15             71432514   0 -  99763055 C

a score=200867.000000
s hg38.chr15_KI270851v1_alt   247815 30 +    263054 CTCCAACCTCTGCTAGGTATGATACA-GGGG
s panTro5.chr15              9638451 30 +  83230942 CTCCAACCTCTGCTAGGTATGATACA-GGGG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        7653 30 -    281578 CTCCAACCTCTGCTAGGTATGATACA-GGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44488958 30 - 121039945 CTCCAACCACTGCTAGGTATGATACA-GGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8425201 30 + 169600520 CTCCAACCACCGCTAGATACAATACA-GAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91223511 30 - 171882078 CTCCAACCTCCACTAGCTACGATACA-AGGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      404783 30 -   9617498 CTCCAACCTCCACTAGCTACGATACA-AGGG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4957383 30 +  14009840 CTCCAACCTCCGCTAGCTACGATACA-GGGG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7571786 31 +  58131712 TTCCAACCTCCGCTAGGTATAATACAGGGGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      110885 30 +   7069685 CTCCAACCTCCACTAGCTACGATACA-GGGG
i manLeu1.NW_012109919v1    N 0 C 0
s colAng1.NW_012115677v1     3031502 30 +   3749464 CTTCAACCTCTGCTAGGTACGATACA-GGAG
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1     1002486 30 -   1842816 TTCCAACCTCTGCTAGGTACAAAACA-GGGG
i cebCap1.NW_016107745v1    C 0 I 16
s aotNan1.NW_018502759v1     9384385 30 +  14477005 CTCCAACCTCTGCTAGGTATGATACA-GGGG
i aotNan1.NW_018502759v1    C 0 I 1
s otoGar3.GL873533          30943707 25 +  31380117 CTCCAACCTCC----GGTATAACATG-GAG-
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5822548 26 -  61074082 TTCCAACCTCTGC----TATGATACA-GGGG
i canFam3.chr9              C 0 I 1
e panPan2.chr15             71432514  0 -  99763055 C

a score=57167.000000
s hg38.chr15_KI270851v1_alt   247845 14 +    263054 CAGCCCTACCCTCT
s panTro5.chr15              9638481 14 +  83230942 CAGCCCTACCCTCT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        7683 14 -    281578 CAGCCCTACCCTCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44488988 14 - 121039945 CATCCCTACCCTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8425231 14 + 169600520 CGGCCCTACCCTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91223541 14 - 171882078 CGGCCCTACCCTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      404813 14 -   9617498 CGGCCCTACCCTGT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4957413 14 +  14009840 CAGCCCTACCCTGT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7571817 13 +  58131712 CGGCCCTACTCC-C
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      110915 14 +   7069685 CAGCCCTACCCTGT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3031532 14 +   3749464 CGGCCCTACCCTCT
i colAng1.NW_012115677v1    C 0 C 0
s aotNan1.NW_018502759v1     9384416 13 +  14477005 CGGCGCTACCCCC-
i aotNan1.NW_018502759v1    I 1 C 0
s otoGar3.GL873533          30943732  8 +  31380117 CGGCCCCC------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5822575 13 -  61074082 CTGCCCTATCCCC-
i canFam3.chr9              I 1 C 0
e cebCap1.NW_016107745v1     1002516 16 -   1842816 I
e panPan2.chr15             71432514  0 -  99763055 C

a score=1410066.000000
s hg38.chr15_KI270851v1_alt   247859 223 +    263054 GGAATATACAAAATGTTACAC-AGACACAGTATGTACA---------CCGGGGAAGGT------------GG--GCCACCCCAGCAGCCCATGCCCTCGC-TGGTCCACAGTTAGCCCC-ACTTTCTG---GCCTCA------GCTACC-------------------------------------------TCTCTGAATAAGAAGATG--GGAG-CCCCCCTGAGGGAAACGTTGCCATGGTGAGAG-------TAAGGGGACCATC-----------AGG-----CCT-------------------CCTCC-------AAACAAACCAACTCCACC---AGCCTCTGGCTCT
s panTro5.chr15              9638495 223 +  83230942 GGAATATACAAAATGTTACAA-AGACACAGTATGTACA---------CCGGGGAAGGT------------GG--GCCACCCCAGCAGCCCATGCCCTCGC-TGGTCCACAGTTAGCCTC-ACTTTCCG---GCCTCA------GCTACC-------------------------------------------TCTCTGAATAAGAAGATG--GGAG-CCCCCCTGAGGGAAAAGTTGCCATGGTGAGAG-------TAAGGGGGCCATC-----------AGG-----CCT-------------------CCTCC-------AAACAAACCAACTCCACC---AGTCTCTGGCTCT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        7697 218 -    281578 GGAATATACAAAATGTTACAC-AGACACAGTATGTACA---------CCGGGGAAGGT------------GG--GCCACCCCAGCAGCCCATGCCCTCGC-TAGTCCACAGTTAGCCCC-GCTTTCCG---GCCTCA------GCT-CC-------------------------------------------TCTCTGAATAAGAA---G--GGAG-CCCCCCTGAGGGAAACGTTGCCATGGTGAGAG-------TAAGGGGG-CATC-----------AGG-----CCT-------------------CCTCC-------AAACAAACCAACTCCACC---AGCCTCTGGCTCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44489002 223 - 121039945 GGAATATACAAAATGTTACAC-AGACACAGTATGTACA---------CCGGGGAAGGG------------GG--GCCACCCCAGCAGCCCATGCCCTCGC-TGGTCCACAGTTAGCCCC-ACTTTCCT---GCCTCA------GCTATC-------------------------------------------TCTCTGAATAAGAAGATG--GGAG-TCCCCCTGAGGGAAAAGTGGCTATGGTGAGAG-------TAAGGGGGCCATC-----------AGG-----CCT-------------------CCTCC-------AAACAAACCAACTCCACC---AGCCTCTGGCTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8425245 218 + 169600520 GGAATATACAAAACGCTACAC-AGACACAATACGTACC---------CTGGGGAAGAA------------GG--GCCACCCCAGCAGCCTGTGTCCTC-TGTGGTCCACAGTTAGCCCC-ACTGTCCT---GCCTCA------GCTACC-------------------------------------------TCTCTGAATAAGAAGCTG--GGAGCCCCCCCTGAGGGAAAAGTTGCTATGGTGAGAG-------AAAGG---CCGTC-----------AGA---------------------------CCTCC-------AAACAAACCAACTCCACC---AGCCTCTGGCTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91223555 224 - 171882078 GGAATATACAAAACATTACAC-AGACACAATATGTACA---------TCGGGGAAGGG------------GG--CCCACCCCAGCAGCCCGTGCCCTCGCCTGGTCCACATTTAGCCCC-ACTGGCCC---ACCTCA------GCTACC-------------------------------------------TCTCTGAATAAGAAGATG--GGAG-ACCCCCTGAGGGAAAACTTGCTATGGTGAGAG-------TAAGGAGACCATC-----------AGA-----CCT-------------------CCTCC-------GAACAAACCAACTCCACC---AGCCTCTGGCTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      404827 224 -   9617498 GGAATATACAAAACATTACAC-AGACACAATATGTACA---------TCGGGGAAGGG------------GG--CCCACCCCAGCAGCCCGTGCCCTCGCCTGGTCCACATTTAGCCCC-ACTGGCCC---ACCTCA------GCTACC-------------------------------------------TCTCTGAATAAGAAGATG--GGAG-ACCCCCTGAGGGAAAACTTGCTATGGTGAGAG-------TAAGGAGACCATC-----------AGA-----CCT-------------------CCTCC-------GAACAAACCAACTCCACC---AGCCTCTGGCTCT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4957427 224 +  14009840 GGAATATACAAAACGTTACACAAGACACAATATGTACA---------TCGGGGAAGGG------------GG---CCACCCCAGCAGCCCATGCCCTTGCCTGGTCCACAGTTTGCCCC-ACTGTCCT---GCCTCA------GCTACC-------------------------------------------TCTCTGAATGGGAAGATG--GGAG-ACCCCCTGAGGGAAAACTTGCTATGGTGAGAG-------TAAGGAGGCCATT-----------AGA-----CCT-------------------CCTCC-------GAACAAACCAACTCCACC---AGCCTCTGGCTCT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7571830 220 +  58131712 AGAATATACAAAATGTTACAC-AGATACTATATGTACA---------CTGGGGAAGGG------------AG--GCCACCCCAGCAGCCCATGCCCTCGCCTGCTCTACACTTAGCCCC-ACTGTCCT---GCCTCA------GCTGCC-------------------------------------------TCTCTGAAT---AAGACA--GGAG--CCCCCTGAGGGAAAAGTTGCTTTGGTGAGAG-------TAGGGAGGCCTTC-----------AGG-----CCT-------------------CCTCC-------AAACAAACCAACTCCACC---AGCCTCTGGCTCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      110929 224 +   7069685 GGAATATACAAAACGTTACACAAGACACAATATGTACA---------TCGGGGAAGGG-------------G--GCCACCCCAGCAGCCCATGCCCTCACCTGGTCCACAGTTTGCCCC-ACTGTCCC---GCCTCA------GCTACC-------------------------------------------TCTCTGAATGGGAAGATG--GGAG-ACCCCCTGAGGGAAAACTTGCTATGGTGAGAG-------TAAGGAGGCCATC-----------AGA-----CCT-------------------CCTCC-------GAACAAACCAACTCCATC---CGCCTCTGGCTCT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3031546 223 +   3749464 GGAATCTACAAAATGTTACAC-AGACACAGTATGTACA---------CCGGGGAAGGG------------GG---CCACCCCAGCAGCCCCTACCCTCGCCTGGTCCACAGTTAGCCCC-ACTGTCCT---GCCTCA------GCTACC-------------------------------------------TCTCTGAATAAGAAGATG--GGAG-CCCCCCTGAGGGAAAAGTTGCTATGGTGAGAG-------TAAGGAGGCCATC-----------AGA-----CCT-------------------CCTCC-------AAACCAACCAACTCCACC---AGCCTCTGGCTCT
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1     1002532 223 -   1842816 GGAATATACAACATGTTACAC-AGATACAATATGTACA---------CTGGGGAATGG------------GG--GTCACCCCAGCAACCCGTGCCCTCACCTGGTCCACAGTTAGCGCC-ACTGTCCT---GCCTCA------GCTGCC-------------------------------------------TCTCTGAATAAGAAGATG--GGAG--CCCCCTGAGGGAAAAGTTGCTTTGGTGAGAG-------GAAGGAGGCCATC-----------AGG-----CCT-------------------CCTCC-------AAACCAACCAACTCCAGC---AGCCTCTGGCTCT
i cebCap1.NW_016107745v1    I 16 C 0
s aotNan1.NW_018502759v1     9384429 224 +  14477005 AGAATATACAAAATGTTACAC-AGATACAATATATACA---------CTGGGGAAGCA------------GG--GCCACCCCAGTAGCCCGTGCCCTCACCTGTTCTACAGTTAGCCCC-ACTGTCCT---GCCTCA------GCTGCC-------------------------------------------TGTCAGTGTAAGAAGATG--GGAG-CCCCCCTGAGGGAAAAATTGCTTTGGTGAGAG-------TAAGGAGGCCATT-----------AGG-----CCT-------------------CCTCC-------AAACAAGCCAATTCTATA---AGCGTCTGGCTCT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30943740 251 +  31380117 -AGATATACAAAATACTACAC-AGATACAATATATACAGGCCTATGTCCTGGCCAGGTTGAGTTAGGCCCGG--CCCAGCCCAGCAAAGC-----------TGGACAAGGCGCTGCCCC-ACTGTCCT---GCCCCA------AATCCC-------------------------------------------TCTTAGA----GAGGATA--GATG----GCCTGAGGGAAGGACTGCTTTGGGGTAAGGGGGCACTAAGGAGCCCTTTCTTGTTCCCAGAGG-----CAG-------------------CTTCCTTAAAAAAAAGAAAATAAATTTATA---AGCCTCTGGCTTT
i otoGar3.GL873533          C 0 I 3689
s canFam3.chr9               5822588 301 -  61074082 AGAATATACAAAATGTTACAC-AGGTACAGTATATACA---------CTGGGGAGGGA------------GGCCCCCCCCCCACCAGCTTATGCCTTTGCCTGGCCTG-GGTTAGCCCCAACTGTCCTAAGGCCTGGGAGAGTGCTGCCCAGTCATTGAGCTGGACAGGGGGAGCACTTGTTCCCCAAAGTGCCTCTGAAT-AGAGGATGCCTGAG-CCCCTCTGAAGGA----CTGCT-TGGTGGGGG-------TGAGGAGGCCACC-----------AGGGAGCCCCTGCCCCCCAAGAAAGGGAGCCCTCT-------AAATAAACTATGTTTTTATTGAGCCTCTGGCTCT
i canFam3.chr9              C 0 C 0
e panPan2.chr15             71432514   0 -  99763055 C

a score=180489.000000
s hg38.chr15_KI270851v1_alt   248082 31 +    263054 -------TAAATAACAATCATCATCATCCAGAAATTTA
s panTro5.chr15              9638718 31 +  83230942 -------TAAATAACAATCATCATCATCCAGAAATTTA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        7915 31 -    281578 -------TAAATAACAATCATCATCATCCAGAAATTTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44489225 28 - 121039945 -------TAAATAAAA---ATCATCATCCAGAAATTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8425463 31 + 169600520 -------TAAATAACAATCATTGTCATCCAGAAATGTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91223779 31 - 171882078 -------TAAATAACAATCATCATCATCCAGAAATCTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      405051 31 -   9617498 -------TAAATAACAATCATCATCATCCAGAAATCTA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4957651 31 +  14009840 -------TAAATAACAATCATCATCATCCAGAAATCTA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7572050 31 +  58131712 -------TAAATAGCAAACATCACCATCCAGAAATTTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      111153 31 +   7069685 -------TAAATAACAATCATCATCATCCAGAAATCTA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3031769 31 +   3749464 -------TAAATAACAATCATCAGCATCCAGAAATTTA
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1     1002755 31 -   1842816 -------TAAATAACAACCATCATCATCCAGAAATTTA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9384653 31 +  14477005 -------TAAATAACAATATTCATCATCCAGAAATTTA
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9               5822889 32 -  61074082 TTGTTTTTCTGGAACGATGAGTA--GTCCAGATA----
i canFam3.chr9              C 0 C 0
e otoGar3.GL873533          30943991 3689 +  31380117 I
e panPan2.chr15             71432514  0 -  99763055 C

a score=280626.000000
s hg38.chr15_KI270851v1_alt   248113 35 +    263054 GGGACTCAGCCCTGGTCAGGGTGGCAAATGGTCTG
s panTro5.chr15              9638749 35 +  83230942 GGGACTCAGCCCTGGTCAAGGTGGCAAATGGTCTG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        7946 34 -    281578 GGGACTCAGCCCTGGTCAGGGTGGCAAA-GGTCTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44489253 35 - 121039945 GGGACTCAGCCCTGGTCAAGGTGGCAAAGGGTCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8425494 35 + 169600520 AGGACTCAGCCCTGGTCAAGGTGGCAAAGGGTCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91223810 35 - 171882078 AGAACTCATCCCTGGTCAAGGCGGCAAAGGGTCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      405082 35 -   9617498 AGAACTCATCCCTGGTCAAGGCGGCAAAGGGTCTC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4957682 35 +  14009840 AGGACTCAGCCCTGGTCAAGGCGGCAAAGGGTCTG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7572081 35 +  58131712 AGGACTCGGCCCTGGTCAAGGTGGTAAAGGGTCTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      111184 35 +   7069685 AGGACTCAGCCCTAGTCAAGGTGGCAAAGGGTCTG
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3031800 35 +   3749464 AGGACTCAGCCCTGGTCAAGGTGGCAAAGGGTCTG
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1     1002786 35 -   1842816 AGGACTCAGCCCTGGTCAAGGTGGCAAAGGGTCTG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9384684 35 +  14477005 AGGAATCAGCCCTGGCCAAGGTGGCAAAGGGTCTG
i aotNan1.NW_018502759v1    C 0 I 621
s otoGar3.GL873533          30947680 35 +  31380117 GAGATTTAGTCCTGGTCTAGATGGCAAAAGGTCTG
i otoGar3.GL873533          I 3689 I 6
s canFam3.chr9               5822921 35 -  61074082 AAGACACAGCCCTTGCCAAGGTGGCAAGAGGTCTG
i canFam3.chr9              C 0 I 6
e panPan2.chr15             71432514  0 -  99763055 C

a score=272374.000000
s hg38.chr15_KI270851v1_alt   248148 46 +    263054 TTTGT-----CTTTCCCCATTAGA-------------------CAGAGGTCTTGTGCTGCTACCCTAATT
s panTro5.chr15              9638784 46 +  83230942 TTTGT-----CTTTCCCCATTAGA-------------------CAGAGGTCTTGTGCTGCTACCCTAATT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        7980 46 -    281578 TTTGT-----CTTTCCCCATTAGA-------------------CAGAGGTCTTGTCCTGCTACCCTAATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44489288 46 - 121039945 TTTGT-----CTTTCCCCATTAGA-------------------CAGAGGTCTTGTCCTGCTACCCTAATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8425529 46 + 169600520 TTTGT-----CTTTCCCCATTAGA-------------------CAGAGGTCTTGTCTTGCTACCCTAATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91223845 46 - 171882078 TTTGT-----CTTTCCCCATTAGA-------------------CAGAGGTCTTGTGTTGCTACCCTAATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      405117 46 -   9617498 TTTGT-----CTTTCCCCATTAGA-------------------CAGAGGTCTTGTGTTGCTACCCTAATT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4957717 46 +  14009840 TTTGT-----CTTTCCCCAGTAGA-------------------CAGAGGTCGTGTGTTGCTCCCCTAATT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7572116 51 +  58131712 TTTTTTACCCCCACCCCCATTAGA-------------------CAGGGGTCTTGTCTTGCTACCCTAATG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      111219 46 +   7069685 TTTGT-----CTTTCCCCATTAGA-------------------CAGAGGTCGTGTGTTGCTCCCCTAATT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3031835 46 +   3749464 TTTGT-----CTTTTCCCATTACA-------------------CAGAGGTCTTGTCCTGCTACCCTAATT
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1     1002821 46 -   1842816 TTTGT-----CTCCCCCCATTAGA-------------------CAGGGCTCTTGTCTTGCTACGCTAACA
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30947721 46 +  31380117 CTTAT-----CTTCCCACATCAAA-------------------CAGGGGTCTTATCTTGCTAATCTATGG
i otoGar3.GL873533          I 6 C 0
s canFam3.chr9               5822962 65 -  61074082 TTTGT-----CTCCCCCAATTAGGAGGCTTTTCACACCCCTCTCAGGGGTCTTATCTTGCTAGTTTAGGG
i canFam3.chr9              I 6 C 0
e aotNan1.NW_018502759v1     9384719 621 +  14477005 I
e panPan2.chr15             71432514  0 -  99763055 C

a score=591796.000000
s hg38.chr15_KI270851v1_alt   248194 81 +    263054 GTAAAGG---GGTGCCTGGGAAG--------AGGTGGTAGGGACATGGTGGCGGTGGAGACTCCAGCCCCACTTCTCCAGGCTT-TGCTGACA
s panTro5.chr15              9638830 81 +  83230942 GTAAAGG---GGTGCCTGGGAAG--------GGGTGGTAGGGACATGGTGGTGGTGGAGACTCCAGCCCCACTTCTCCAGGCTT-TGCTGACA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        8026 81 -    281578 GTAAAGG---GGTGCCTGGGAAG--------GGGTGGTAGGGACATGGTGGCGGTGGAGACTCCAGCCCCACTTCTCCAGGCTT-TGCTGACA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44489334 81 - 121039945 GTAAAGG---GGTGCCTGGGAAG--------GGGTGGTAGGGACATGGTGGCAGTGGAGACTCCAGCCCCACTTCTCCAGGCTT-TGCTGACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8425575 81 + 169600520 GTAAAGG---GGTGACTGGGAAG--------GGGTGGTAGGGACATGGTGGCGGTGGAGACTTCAGCCCCACCTCTCCAAGTTT-TGCTGACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91223891 81 - 171882078 GTAACGG---GGTGACTGGGAAG--------GGGTGGTAGGGACATGGTGGCAGTGGAGACTCCAGCCCCATTTCCCCAGGCTT-TGCTGACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      405163 81 -   9617498 GTAACGG---GGTGACTGGGAAG--------AGGTGGTAGGGACATGGTGGCAGTGGAGACTCCAGCCCCATTTCCCCAGGCTT-TGCTGACA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4957763 81 +  14009840 GTAACGG---GGTGACTGGGAAG--------GGGTGGTAGGGACATGGTGGCAGTGGAGACTCCAGCCCCACTTCTCCAGGCTT-TGCTGACA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7572167 82 +  58131712 GTAAAGG---GGTGACTGGGAAG--------GGGTGATAGGAATATGATGGGGGTGGAGACTCCAGCCCCACTTCTCCAGGCTTATGCTGACA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      111265 81 +   7069685 GTAACGG---GGTGACTGGGAAG--------GGGTGGTAGGGACATGGTGGCAGTGGAGACTCCAGCCCCACTTCTCCAGGCTT-TGCTGACA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3031881 82 +   3749464 GTAAAGGCACGGTGACTGGGAAG--------GGGTGGTAGGGACATGGTGGCGGTG--GACTCCAGCCGCACTTCTCCAGGCTT-TGCTGACG
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1     1002867 80 -   1842816 ATAAAGG---GGTGACTGGGAAG--------GGGTGGGAGGGACATGGTGGGGGCGGAGACTCCAGTCCCA-TTCTCCAGGACT-TGCTAACA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9385340 81 +  14477005 GTAAAGG---GGTGACTGGGAAG--------GGATGGTAGGGACATGGTGGGGGCAGGGCCTCTAGCCCCACTTCTTCAGGCTT-TGCTGATA
i aotNan1.NW_018502759v1    I 621 C 0
s otoGar3.GL873533          30947767 68 +  31380117 AGAAAGG---GGTGACTGGGA------------GTGGCAGAGATGGCGTAGGGG---------CAGCGCCACTTCTCCACACCT-TGTTGACA
i otoGar3.GL873533          C 0 I 47
s canFam3.chr9               5823027 89 -  61074082 ATAAAAG---GGTAACTGGGAAGGAATGATAGGGTGGCAGGGACAGGGTGGGAGCAGAGCCCCCGGCCCCACTTCTCCAGGTTT-TGCTTGCT
i canFam3.chr9              C 0 C 0
e panPan2.chr15             71432514  0 -  99763055 C

a score=32824.000000
s hg38.chr15_KI270851v1_alt   248275 6 +    263054 GGGGCC
s panTro5.chr15              9638911 6 +  83230942 GGGGCC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        8107 6 -    281578 GGGGCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44489415 6 - 121039945 GGGGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8425656 6 + 169600520 GGGGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91223972 6 - 171882078 GGGACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      405244 6 -   9617498 GGAACT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4957844 6 +  14009840 GGGACC
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7572249 6 +  58131712 GGGGCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      111346 6 +   7069685 GGGACC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3031963 6 +   3749464 GGAGCC
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1     1002947 6 -   1842816 AGGGCC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9385421 6 +  14477005 GTGGTC
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9               5823116 6 -  61074082 GGTGTC
i canFam3.chr9              C 0 I 2
e otoGar3.GL873533          30947835 47 +  31380117 I
e panPan2.chr15             71432514 0 -  99763055 C

a score=47892.000000
s hg38.chr15_KI270851v1_alt   248281 8 +    263054 TGCTTTTA
s panTro5.chr15              9638917 8 +  83230942 TCCTTATA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        8113 8 -    281578 TGCTTTTA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44489421 8 - 121039945 TGCTTTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8425662 8 + 169600520 TGCTTTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91223978 8 - 171882078 TGCTTTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      405250 8 -   9617498 TGCTTTTA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4957850 8 +  14009840 TGCTTTTA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7572255 8 +  58131712 TGCTTTTA
i chlSab2.chr26             C 0 I 3
s manLeu1.NW_012109919v1      111352 8 +   7069685 TGCTTTTA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3031969 8 +   3749464 TGCTTTTC
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1     1002953 8 -   1842816 TGCTTTTA
i cebCap1.NW_016107745v1    C 0 I 167
s aotNan1.NW_018502759v1     9385427 8 +  14477005 AGCTTTTA
i aotNan1.NW_018502759v1    C 0 C 0
e canFam3.chr9               5823122 2 -  61074082 I
e otoGar3.GL873533          30947835 47 +  31380117 I
e panPan2.chr15             71432514 0 -  99763055 C

a score=4664.000000
s hg38.chr15_KI270851v1_alt   248289 1 +    263054 A
s panTro5.chr15              9638925 1 +  83230942 A
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        8121 1 -    281578 A
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44489429 1 - 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8425670 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91223986 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      405258 1 -   9617498 A
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4957858 1 +  14009840 A
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7572266 1 +  58131712 G
i chlSab2.chr26             I 3 C 0
s manLeu1.NW_012109919v1      111360 1 +   7069685 A
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3031977 1 +   3749464 A
i colAng1.NW_012115677v1    C 0 C 0
s aotNan1.NW_018502759v1     9385435 1 +  14477005 A
i aotNan1.NW_018502759v1    C 0 I 59
e canFam3.chr9               5823122 2 -  61074082 I
e otoGar3.GL873533          30947835 47 +  31380117 I
e cebCap1.NW_016107745v1     1002961 167 -   1842816 I
e panPan2.chr15             71432514 0 -  99763055 C

a score=633367.000000
s hg38.chr15_KI270851v1_alt   248290 254 +    263054 TTTTTATTTTTATTCCATGAC-TTT-TTAAAAAAATCCCATAACTTCTTTTTCATAAC-TTTTTT-TGTAACTTTTCATAAAACTTTTTTCTACTTTTTTCCCAGAAGTTTTTTTGCCACAACTTTTTTACA-TTTTT-ATCCCATAACTTTTTCACCCCATAAC--TTTTTTAAATAAAGTTATTTAATAAAATAACTTTTTATAAAACTTTAATAAAAGTTTTTTAAT----AAACCCATAACTTTTTTATTTTGGT----TTTTAAT
s panTro5.chr15              9638926 261 +  83230942 TTTTTATTTTTATTCCATGAC-TTT-TAAAAAAAATCCCATAACTTCTTTTTCATAAC-TTTTTT-TGTAACTTTTCATAAAACTTTTTTCTACTTTTTTCCCAGAAGTTTTTTTGCCACAACTTTTTAACATTTTTT-ATCCCATAACTTTTTCGCCCCATAACTTTTTTTTATAAAAAGTTATTTTATTAAATAACTTTTTATAAAACTTTAATAAAAGTTTTTTAATAAAAAAACCCATAACTTTTTTATTTTGGT----TTTTAAT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        8122 200 -    281578 TTTTTATTTTTATTCCATGACTTTT-TAAAAAAAATCCCATAACTTCTTTTTCATAAC-TTTTTT---GAACTTTTCATAATACTGTTTTCTACTTTTTTCCCACAAGTTTTTTTGCCACAACGTTTTTACATTTTTT-ATCCCATAA-TTTTTCACCCCATAAC--TTTTTT-------------------------------------------------------------TAATCCATAACCTTTTAAATCTTGTGTTCTTTTGAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44489430 202 - 121039945 TTTTTATTTTTATTCCGTGAC-TTT-TTTTGAAAATCCCGTAACTTCTTTTTCATAAC-TTTTTTTTGTAACTTTTCATAAAACTTTTTTCTACTTTTTTCCCACAAGTTGTTTTGCCACAACTTTTTTACATTGTTT-ATCCCATAACTTTTTCACCACACAAC--TTTTTT-------------------------------------------------------------AATCCCATAACTTTTTTATTTT-GTGTTCTTTTAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8425671 201 + 169600520 TTTTTTTTTTTATCCCATGAC-TTG-TTTTTTAAATCCCAGAACTTCTTTTTCATAA--TTTTTT-TGCAACTTTTCATGAAACTTTTTTCTACTTTTTTGCCACAGGGTTTTTTGCCACAACTTTTTTACATTTTTT-ATCCCATAACTTTTTCACCCCATAACT-TTTTTT-------------------------------------------------------------AATCCCATAACTTTTTTATTTT-GTGTTCTTTTAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91223987 200 - 171882078 TTTTTATTTTTATCCCATGAC--TT-TTTAAAAAATCCCATAACTTCTTTTTCATAAC-TTTTTT-TGTAACTGTTCATGAAACTTTTTTCTACTTTTATCCCACA-ACTTTTTTGCCACAACTTTTTTACATTTTTT-ATCCCATAACTTTTCCACCCCATAACT-TTTTTT-------------------------------------------------------------AATCCTGTAACTTTTTTATTTT-GTGTTCTTTTAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      405259 200 -   9617498 TTTTTATTTTTATCCCATGAC--TG-TTTAAAAAATCCCATAACTTCTTTTTCATAAC-TTTTTT-TGTAACTGTTCATGAAACTTTTTTCTACTTTTATCCCACA-ACTTTTTTGCCACAACTTTTTTACATTTTTT-ATCCCATAACTTTTCCACCCCATAACT-TTTTTT-------------------------------------------------------------AATCCTGTAACTTTTTTATTTT-GTGTTCTTTTAAT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4957859 202 +  14009840 TTTTTATTTTTATCCCATGAC--TT-TAAAAAAAATCCCACAACTTCTTTTTCATAACTTTTTTT-TGTAACTGTTCATAAAACTTTTTTCTACTTTTATACCACAACTTTTTTTGCCACAACTTTTTTACATTTTTA-ATCCCATAACTTTTCCACCCCATAACA-TTTTTT-------------------------------------------------------------AATCCCGTAACTTTTTTATTTT-GTGTTCTTTTAAT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7572267 181 +  58131712 TTTTTGTTTTTATCCCATGAC--TTATTTTTTTAATCCTGTAACTTCTTGTTCATAATAATTTTT-TTAAACTTTTCATGAAACATTATTCTAC----------------TTTTTTTCACAACTTTTCCACATTTTTT-ATCCCATAACTTTTTCA-TCCACAAC---TTTTT-------------------------------------------------------------TATCCCATAAC---TTTAGTTT-GTGTTCTTTCAAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      111361 201 +   7069685 TTTTTACTTTTATCCCATGAC--TT-TAAAAAAAATCCCATAACTTCTTTTTCATAACTTTTTTT-TGTAACTGTTCATAAAACTTTTTTCTACTTTTATACCACAACTTTTTTTGCCACAACTTTTTTACATTTTTA-ATCCCATAACTTTTCCACCCCATAACA--CTTTT-------------------------------------------------------------AATCCCGTAACTTTTTTATTTT-GTGTTCTTTTAAT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3031978 196 +   3749464 TTTTTATTTTTATCTCATGAC--TT-TTTAAAAAATCCTGTAACTTCTTTTTCGTAACTTTTTTT-GGTAATTTTTCATAAAACTTTTTTCTCCTTTTTTGCCAGAAGTTTTTTTGTC---ACTTTTTTACATTTTTTAATCCCATAACTTT--CACCCCATAATT-TCTTTT-------------------------------------------------------------AATCCTGTAACTTTCTTATTT---TGTTCTTCTAAT
i colAng1.NW_012115677v1    C 0 C 0
e canFam3.chr9               5823122   2 -  61074082 I
e aotNan1.NW_018502759v1     9385436  59 +  14477005 I
e otoGar3.GL873533          30947835  47 +  31380117 I
e cebCap1.NW_016107745v1     1002961 167 -   1842816 I
e panPan2.chr15             71432514   0 -  99763055 C

a score=717207.000000
s hg38.chr15_KI270851v1_alt   248544 145 +    263054 AA--ACACTTGCATAGTTATATTACAACTTTGTAAAAAT-GAAACACATTATCTCATGCCAAGCATGCCCAGCATTTGCACAGTATCAATACCTT---TAATACTATAGTTTTCAAGAAACGCAAAATAAAATTTTAAGGCAAAAACAACA
s panTro5.chr15              9639187 148 +  83230942 AA--ACACTTGCATAGTTATATTACAACTTTGTAAACAT-GAAACACATTATCTCATGCCAAGCATGCCCAGCATTTGCACAGTATCAATACCTTTAATAATACTATAGTTTTCAAGAAACGCAAAATAAAATTTTAAGGCAAAAACAACA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        8322 145 -    281578 AA--ACACTTGCATAGTTATATTACAACTTTGTAAAAAT-GAAACACATTATCTCATGCCAAGCATGCCCAGCATTTGCACAGTATCAATACCTT---TAATACTATAGTTTTCAAGAAACGCAAAATAAAATTTTAAGGCAAAAACAACA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44489632 145 - 121039945 AA--ACACTTGCATAGTTATATTACAATTTTGTAAAAAT-GAAACACATTATCTCATGGCAAGCATGCCCAGTATTTGCACAGTATCAATACCTT---TAATACTATAGTTTTCAGGAAACGCAAAATAAAATTTTAAGGCAAAAACAACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8425872 145 + 169600520 AA--ACACTTGCATAGTTTTATTACAAGTTTGTAAAAAT-GAAACAGTTTATCTCATGCCAGGCATGCCCAGCATTGGCACAGTATCAATACCTT---TAATACTATAGTTTTCAAGACACGCAAAATAAAATTTTAAGGCAAAAACAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91224187 145 - 171882078 AA--ACACTTGCATAGTTATATTCCAATTTTGTAAAAAT-GAAACAGATTATCTCATGCCAAGCATGCCCAACATTTGCACAGTATCAATATGTT---TAATACTATAGTTTTCAAGACAGGCAAAATAAAATTTTAAGGCAAAAGCAGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      405459 145 -   9617498 AA--ACACTTGCATAGTTATATTCCAATTTTGTAAAAAT-GAAACAGATTATCTCATGCCAAGCATGCCCAACATTTGCACAGTATCAATATGTT---TAATACTATAGTTTTCAAGACAGGCAAAATAAAATTTTAAGGCAAAAGCAGCA
i macNem1.NW_012017799v1    C 0 I 8
s cerAty1.NW_012001627v1     4958061 145 +  14009840 AA--ACACTTGCATAGTTATATTATAATTTTGTAAAAAT-GAAACAGATTATCTCATGCCAAGCATGCCCAGCATTTGCACAGTATCAATATGTT---TAATACTATAGTTTTCAAGACATGCAAAATAAAATTTTAAGGCAAAAGCAGCA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7572448 138 +  58131712 AAACACACTTGCATAG-----TTACAATTTTGTAAAAATAAAAACCGACGATCTCATGCCAAGCGTGCCCAGCATTTGCACAGTCTCAATACCTT---TAACGCCATAATTTCCAAGACACAC-----AAAATTTTAAGGCAAAAACAGCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      111562 145 +   7069685 AA--ACACTTGCATAGTTATATTATAATTTTGTAAAAAT-GAAACAGATTATCTCATGCCAAGCATGCCCAGCATTTGCACGGTATCAATATGTT---TAATACTATAGTTTTCAAGACATGCAAAATAAAATTTTAAGGCAAAAGCAGCA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3032174 145 +   3749464 AA--ACACTTGCATAGTTATATTGCAGTTTTGTAAAAAT-GAAACTGATTATCTCATGTCAAGCATGCCCAGCATTTGCACACTGTCAATACCTT---CAATACTACAGTTTTCAAGACACACAAAAGAAAATTTTAAGGCAAACACAGCA
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1     1003128 141 -   1842816 AA--ACACTTGCATAGCGATATTACAATTTCGTAAAAATAAAAACACATTATCTCATGCCAAGTGTGCCCAGCATTTGCAGAGTCTCCATACCTT---TAATACTATAGTTGTCAAGACACAC-----AAAATTTTAAGGCAAAAACAGCA
i cebCap1.NW_016107745v1    I 167 C 0
e canFam3.chr9               5823122   2 -  61074082 I
e aotNan1.NW_018502759v1     9385436  59 +  14477005 I
e otoGar3.GL873533          30947835  47 +  31380117 I
e panPan2.chr15             71432514   0 -  99763055 C

a score=40482.000000
s hg38.chr15_KI270851v1_alt   248689 13 +    263054 CATTCAAACAACT
s panTro5.chr15              9639335 13 +  83230942 CATTGAAACAACT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        8467 13 -    281578 CATTGAAACAATT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44489777 13 - 121039945 CTTTGAAACAATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8426017 13 + 169600520 CTTTGCAACAACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91224332 13 - 171882078 ATGTGCAATAATT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001627v1     4958206 13 +  14009840 CTTTGCAATAATT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7572586 13 +  58131712 CCTTGTAACAATT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      111707 13 +   7069685 CTTTGCAATAATT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3032319 13 +   3749464 CTTTGCAACAATT
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1     1003269 13 -   1842816 CTTTGCAGCAATT
i cebCap1.NW_016107745v1    C 0 C 0
e canFam3.chr9               5823122  2 -  61074082 I
e aotNan1.NW_018502759v1     9385436 59 +  14477005 I
e otoGar3.GL873533          30947835 47 +  31380117 I
e panPan2.chr15             71432514  0 -  99763055 C
e macNem1.NW_012017799v1      405604  8 -   9617498 I

a score=2466024.000000
s hg38.chr15_KI270851v1_alt   248702 520 +    263054 TAATAATTTATTACATTACAGTGGCATCACACCAGCAGTCAATAAGgccactcta--gggaaaaa-tctttcagtatttccacgacacattctgtttacaataattcataaactggtaaaattcattctaagaaaacttggcaaataaaactttggactggaattggcatttctttCTCTGCTTTTCGTTCCCACTGTTTCTTTCTTTTATACTACAGTATTCATATTTTAAAATGTTTTAAATTATTTCAGAACATTAAGATAGCAGTTACATATTTTAATAGTTATATTATTTTAAAACGACTCTT-----TAAAGTTTTAGAGAAACTATATTAT-----GGATAGGGCTGATTTACAT-------TTTCAAATTTTCT-AAAATCAGCTTTGGTTTTAGAGCTGA-----TTTTTTTTTTCATTTCTGGAAAAT-TATCAGGTTTAATCAAATACTTTTAAAATGATTATTATATATTGCCATCTTTAAATAGGTATTTTGATT-CTTCCTACAGAAATTAAAATGTATTCAGTGGAACTCACA
s panTro5.chr15              9639348 524 +  83230942 TAATAATTTATTACATTACAGTGGTATCACACCAGCAGTCAACAAGgccactcta--gggaaaaa-tctttcagtatttccatgacacattctgtttacaataattcataaactggtaaaattcattctaagaaaacttggcaaataaaactttggactggaattggcatttctttCTCTGCTTTTCGTTCCCACCATTTCTTTCTTTTATACTACAGTATTCATATTTTAAAATGTTTTAAATTATTTCAGAACATTAAGATAGCACTTACAT-TTTTAATAGTTATATTATTTTAAAATGACTCTTTAAGATAAAGTTTTAGAGAAACTATATTAT-----GGATAGGGCTGATTTACAT-------TTCCAAATTTTCT-AAAATCAGCTTTGGTTTTAGAGCTGA-----TTTTTTTTTTCATTTCTGGAAAAT-TATCAGATTTAATCAAATACTTTTAAAATGATTATTATATATTGCCATCTTTAAATAGGTGTTTTGATT-CTTCCTACAGAAATTAAAATGTATTCAGTGGAACTCACA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        8480 521 -    281578 TAATAATTTATTACATTACAGTGGCATCACACCAGCAGTCAATAAGgccactcta--gggaaaaa-tctttcagtatttccatgacacattctgtttacaataattcataaactggtaaaattcattctaagaaaacttggcaaataaaactttggactggaattggcatttctttCTCTGCTTTTCGTTCCCACCATTTCTTTCTTTTATACTACAGTATTCATATTTTAAAATGTTTT-AATTATTTCAGAACATTAAGATAGCAGTTACAT-TTTTAATAGTTATATTATTTTAAAATGACTCTT-AAGATAAAGTTTTAGAGAAACTATATTAT-----GGATAGGGCTGATTTACAT-------TTTCAAATTTTCT-AAAATCAGCTTTGGTTTTAGAGCTGA------TTTTTTTTTCATTTCTGGAAAAT-TATCAGGTTTAATCAAATACTTTTAAAATGATTATTATATATTGCCATCTTTAAATAGGTGTTTTGATT-CTTCCTACAGAAATTAAAATGTATTCAGTGGAACTCACA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44489790 522 - 121039945 TAATAATTTATTACATTACAGTAGCATCACACCAGCAGTCAATAATGCCACTCTAGGGGGAAAAA-TCTTTCAGTATTTCCATTACACATTCTGTTTACAAGAATTCACAAATTAGTAAAATTCATTCTAAGAAAACTTGGCAAATAAAGCTTTGGACTGGAATTGGCATTTCTTTCTCTGCTTTTCCTTCCCACTGTTTCTTTCTCTTATACTACAGTATTCATGTTTTAAAATGTTTTAACTTATTTC-GAACATTAAGGTAGCAGTTACATTTTTTAATAGTTATATTATTTTAAAATGACTCTTCGAGATAAAGTTTTAGAGAAACTATATTAT-----GGATAGGACTGATGTACAT-------TTTCAAATTTTCTAAAAATCAGCTTTGGTTTTAGAGCTA----------TTTTTTCATTTCTGGAAAATCTATCAGGTTTAATCAAATACTTTTAAAATAATTATTACATACTGCAGTCTTTAAATAGGTGTTTTGATT--TTCCTACAGAAATTAAAATGTATTCAGTGCAACTCACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8426030 524 + 169600520 TAAGAATTTATTACATTACAGTAGCATGACACCAGCAGACAATAATgccacttta--ggcaaaag-tctttcagtatttcc-ttatacattctgtttacaagaattcataaattggtaaaagtcattctacgaaaacttggcagataaagctttggactggaattggcatttctttCTCTACTTTTCCTTCCCACCGTTTCTTTCTTTTAAACTACAGTGTTCATATTTTAAAATGTTTTAACTTATTTCAGAACATT--GATAGCAGTTACATTTTTTAATAGTTATATTATTTTAAAATGACTA---AGA-TAAAGTTTTAGAGAAACTATATTAT-----GGATAGGGCGGATTTACAT-------GTTCAAATTTTCTAAAAATCAGCTTTGGTATTAGAGCTGA-ATTTTTTTTTTTTTCATTTCTGGAAAACCTATCAGGTTTAATTAAATACTTTAAAAATTGTTACTATATATTGCAATATTTAAATAGGTGTTTTGATT-CTTCCTAAGAAAATTCAAATTTAGTCAGTTGAACTCACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91224345 534 - 171882078 TAATAATTTATTACATTACAGTAGCATCACACCAGCAGTCAATAATgccacttta--ggcaaaag-tttttcagtatttccattatacattctgtttacaagaatttataaataggtaaaattcattctaagaaagcttggcaactaaagctttggactggaactggcatttctttCTCTACTTTTCATTCCCACCGTTTCTTTCTTTTAAGCTACAGTATTCATATTTTAAAATGTTTTAACTTATTTCAGAACATTAAGATAGCAGTTACATTTTTTAATAGTTATACTATTTTTAAATGACTCTTTAAG-TAAAGGTTTAGAGAAACTATATTAC-----AGATAGAGCTGatttatattttcaaatttcaaattttctaaaaatcaactttGGTTTTAGAACTGA----TTTTTTTTTTTCATTTCTGGAAAACCTATCAGGTTCAATCAACTACTTTAAAAATAATTATTATATATTGCAATCTTTAAATAGGTGTTTTGATT-CTTCCTACAGAAACTCAAATTTATTCAGTTGAACTCGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      405612 533 -   9617498 TAATAATTTATTACATTACAGTAGCATCACACCAGCAGTCAATAATgccacttta--ggcaaaag-tttttcagtatttccattatacattctgtttacaagaatttataaataggtaaaattcattctaagaaagcttggcaactaaagctttggactggaactggcatttctttCTCTACTTTTCATTCCCACCGTTTCTTTCTTTTAAGCTACAGTATTCATATTTTAAAATGTTTTAACTTATTTCAGAACATTAAGATAGCAGTTACATTTTTTAATAGTTATACTATTTTTAAATGACTCTTTAAG-TAAAGGTTTAGAGAAACTATATTAC-----AGATAGAGCTGatttatattttcaaatttcaaattttctaaaaatcaactttGGTTTTAGAACTGA-----TTTTTTTTTTCATTTCTGGAAAACCTATCACGTTTAATCAACTACTTTAAAAATAATTATTATATATTGCAATCTTTAAATAGGTGTTTTGATT-CTTCCTACAGAAACTCAAATTTATTCAGTTGAACTCGCA
i macNem1.NW_012017799v1    I 8 C 0
s cerAty1.NW_012001627v1     4958219 526 +  14009840 TAATAATTTATTACATTACAGTAGCATCACACCAGCAGTCAATAATgccacttta--ggcaaaagttttttcagtatttccattatacattctgtttacaagaatttataaataggtaaaattcattctaagaagacttggcaactaaagctttggactggaactggcatttctttCTCTACTTTTCATTCCCACCATTTCTTTCTTTTAAACTACAGTATTCATATTTTAAAATGTTTTAACTTATTTCAGAACATTAAGATAGCAGTTACATTTTTTAATAGTTATATT-TTTTTAAAAGACTCTTTAAG-TAAAGGTTTAGAGAAACTATATTAT-----GGATAGAGCTGATTTATAT-------TTTCAAATTTTTAAAAAATCAACTATGGTTTTAGAACTGT-----TTTTTTTTTTCATTTCTGGAAAACCTATCAAGTTTAATCAAATACTTAAAAAATAATTATTATATATTACAATCTTTAAATAGGTGTTTTGATT-CTTCCTACAGAAACTCAAATTTATTCAGTTGAACTCGCA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7572599 524 +  58131712 TCCTACTTCATTACATTACAGTAGCatcacagtagcagtcaataatggcacttta--gacaacag-tctttcagtatttccattatacattctgttgacaggaattcagaaattggtaaaagtcattctaagaaaactcggcaaataaagctttgcattggaattggcatttctttCTCTACTTTTCCTTCCCCCAGTTTCATTCTTTTAAACTACAGTATTCATGTTTTAAAATGTTTTAACTTATTTCAGAACATTAACATAGCAGTTACATTTTTGAATAGTTTTAGTCTTTTAAAGTGACTCTTTAAGATAAAGTTTTAGAGAAACTATATTAT-----GGATAGGGCTGACTTACAT-------TTTCACATCTTCTAAATATCAGCTTTGCTTTTAGAACTG------ATTTTTTTTTCATTTCTGGAAAACCTATCAGGTTTAATTAAATACTTTAAAAATG---GTTATATATTGCAATCTTTAAAAAGGTATTTTCTTTACTTCCTACAGAAATTCAAATTTATTCAGTTGAACTCATA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      111720 532 +   7069685 TAATAATTTATTACATTACAGTAGCatcacaccagcagtcaataatgccacttta--ggcaaaagttttttcagtatttccattatacattctgtttacaagaatttataaataggtaaaattcattctaagaagacttggcaactaaagctttggactggaactggcatttctttCTCTACTTTTCATTCCCACCATTTCTTTCTTTTAAACTACAGTATTCATATTTTAAAATGTTTTAACTTATTTCAGAACATTAAGATAGCAGTTACATTTTTTAATAGTTATATTATTTTTAAATGACTCTTTAAG-TAAAGGTTTAGAGAAACTATATTAC-----AGATAGAGCTGATTTATAT-------TTTCAAATTTTTAAAAAATCAACTATGGTTTTAGAACTGTTTTTTTTTTTTTTTTCATTTCTGGAAAACCTATCAAGTTTAATCAAATACTTTAAAAATAATTATTATATATTGCAATCTTTAAACAGGTGTTTTGATT-CTTCCTACAGAAACTCAAATTTATTCAGTTGAACTCGCA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3032332 507 +   3749464 TAAGAATTTATTACATTACAGTAGCATCACACCAGCAGTCCATAATgccacgtta--ggcaaaag-tctttcagtatttccattatacattctgtttacaagaattcataaattggtaaaattcattctaagaaaacttggcaaataaagctttggaccggaattggcatttctttCTCTACTTTTCCGTCCCACTGT----TTCTTTTAAGCTACGGTATTCATATTTTAAAATGTTTTAACTTATTTCAGAACATTAAGATAGCAGTTGTATTTTTTAATAGTTA-----TTTTTAAATGACTA---AGA-TAAAGTTTTAGAGAA-----ATTAT-----AGATAGGGCTGGTTTATGT-------TTTCAAATTTTCTAAAAATCAGCTTTGGTTTTAGAGCTGA------TTTTTTTTTCATTTCTGGAAAACCTATCAGGTTTAATCAAATACTTT-AAAATGATTATTATATATTGCAATATTTAAATAGGTGTTTTGATT-CTTCCTACAGAAATTCAGATTTATTCAGTTGAACTCACA
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1     1003282 518 -   1842816 CAATAATTTATTACATTACAGGAGCatcacagcagcagtcaataatgccgtttta--gacaaaag-gc--tcaggatttccatcttacattctgttctcaagagttcatacattggtaaaagtcattcttaggaaacttggcaactaaagcgttggacgggaattagcctttcttTCTCTACTTTTTCTTCCC----TTGGTTTCTTTCAAACTATGACATTCATATTTTAAAATGTCTC-AGTAATTTCAAAACATTAAGATAGCAGTTACATGTTTTAATAGTTAT----CTTGAAAATGACTCTTAAGA-TAAAGTTTTGGAGAAGCTATTTTATGGATAGGATAGGACTGATTTATAT-------TTTCAAATTTTCTTAAAATCAGCTTTGGTTTCAGAACTGA-------TTTTTATTCATTTCTGGAAAATCTATCAGTTTTAATGAAATCCTTTAAAAATGATTATCATATATTTTACTCTTTAAATAGGTATTTTGATT-CTTCCTACAGAAATTGAAATTTATTCAGTTGAACCCACA
i cebCap1.NW_016107745v1    C 0 I 891
e canFam3.chr9               5823122   2 -  61074082 I
e aotNan1.NW_018502759v1     9385436  59 +  14477005 I
e otoGar3.GL873533          30947835  47 +  31380117 I
e panPan2.chr15             71432514   0 -  99763055 C

a score=24131.000000
s hg38.chr15_KI270851v1_alt   249222 6 +    263054 GTTTAA
s panTro5.chr15              9639872 6 +  83230942 GTTTAA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        9001 6 -    281578 TTTTAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44490312 6 - 121039945 TTTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8426554 6 + 169600520 TTTTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91224879 6 - 171882078 TTTTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      406145 6 -   9617498 TTTTAA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4958745 6 +  14009840 TTTTAA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7573123 6 +  58131712 CTTTGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      112252 6 +   7069685 TTTTAA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3032839 6 +   3749464 TTTTAA
i colAng1.NW_012115677v1    C 0 C 0
e canFam3.chr9               5823122 2 -  61074082 I
e aotNan1.NW_018502759v1     9385436 59 +  14477005 I
e otoGar3.GL873533          30947835 47 +  31380117 I
e cebCap1.NW_016107745v1     1003800 891 -   1842816 I
e panPan2.chr15             71432514 0 -  99763055 C

a score=567431.000000
s hg38.chr15_KI270851v1_alt   249228 149 +    263054 AATTCTGTGTTTCTGATGAACTCTAACATT---------CCAATGTTGCCTTCTAAGCAAACTGAAAGCTGCCTTATACAGAATGAGGAAGAGCACAAATACTCGGCTGAATG----------------------------AGGTATCGCAAAAGAA-TGCATGCACTTTGGAGAAAGACTTAAGTT
s panTro5.chr15              9639878 149 +  83230942 AATTCTATGTTTCTGATGAACTCTAACATT---------CCAATGTTGCCTTCTCAGCAAACTGAAAGCTGCCTTATACTGAATGAGGAAGAGCACAAATACTCGGCTGAATG----------------------------AGGTATCGCAAAAGAC-TGCATGCACTTTGGAGAAAGACTTAAGTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        9007 148 -    281578 AATTCTATG-TTCTGATGAACTCTAACATT---------CCAATGTTGCCTTCTAAGCAAACTGAAAGCTGCCTTATACTGAATGAGGAAGAGCACAAATACTCGGCTGAATG----------------------------AGGTATCGCAAAAGAC-TGCATGCACTTTGGAGAAAGACTTAAGTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44490318 149 - 121039945 AATTCTATGTTTCTGATGAACTCTAACCTT---------CCAATGTTGCCTTCGAAGCAAACTGAAAGCTGCCTTACACTGAATGAGGAAGAGCACAAATACTCGGCTGAATG----------------------------AGGTATCGCAAAAGAC-GGCATGCACTTTGAAGAAAGACTTAAGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8426560 149 + 169600520 CATTCTATGTTTCTGATGAACTCTAACCTT---------CCAATGTTGCCTTCTAAGCAAATTGAAAGCTGCCTTACACTGAATGAGGAAGAGCACAAATACTTGGCTGAATG----------------------------AGGTATCGCAAAAGAC-TGCGTGCACTTTGAAGAAAGACTTAAGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91224885 108 - 171882078 AATTCTATGTTTCTGATGAACTCTAACCTT---------CC-------------AAGCAAATCAAAAGCTGCCTTATA----------------------------CTGAATG----------------------------AGGTATCGCAAAAGAC-TGTACGCACTTTGAAGAAAGACTTAAGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      406151 108 -   9617498 AATTCTATGTTTCTGATGAACTCTAACCTT---------CC-------------AAGCAAATCAAAAGCTGCCTTATA----------------------------CTGAATG----------------------------AGGTATCGCAAAAGAC-TGTACGCACTTTGAAGAAAGACTTAAGTT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4958751 112 +  14009840 AATTCTATGTTTCTGATGAACTCTAACCTT---------CC---------TTCTAAGCAAATCAAAAGCTGCCTTATA----------------------------CTGAATG----------------------------AGGTATCGCAAAAGAC-TGTACACACTTTGAAGAAAGACTTAAGTT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7573129 144 +  58131712 AGTTCTATGTTTCTGATAAACTCTAACCTTCTAATGTTGCC---------TTCTCAGCAAACTGAAAGCTGCCTTATA----------------------------CTGAATGAGGAAGAGAACAAATACTTGGCTGAATTAGGTATTGCAAAAGAC-TGCGTGCACTTTGAAGAAAAAC-----TT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      112258 112 +   7069685 AATTCTATGTTTCTGATGAACTCTAACCTT---------CC---------TTCTAAGCAAATCGAAAGCTGCCTTATA----------------------------CTGAATG----------------------------AGGTATCGCAAAAGAC-TGTACGCACTTTGAAGAAAGACTTAAGTT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3032845 149 +   3749464 AATTCTATGTTTCTGATGAACTCTAACCTT---------CCAATGTTGCCTTCTAAGCAAACCGAAAGCTGCCTGACACTGAATGAGGAAGAGCACAAATACTTGGCTGAATG----------------------------AGGTATCGCAAAAGAC-TGCGTGCACTTTGAAGAAAGACTTAGGTT
i colAng1.NW_012115677v1    C 0 I 2
s cebCap1.NW_016107745v1     1004691 150 -   1842816 aatTCTATGTTCTTGATGAATGCTAACCTT---------CTGATGTTGCCTTCTAAGCAAATTGAAAGCTGCCTTCTACTGAATGAGGAAGAGAACAAATACTTGGCTGAATG----------------------------AAGTACTGCAAAAGACTTGCATGCACTTTGAAGAAAGACTTAAGTC
i cebCap1.NW_016107745v1    I 891 C 0
e canFam3.chr9               5823122   2 -  61074082 I
e aotNan1.NW_018502759v1     9385436  59 +  14477005 I
e otoGar3.GL873533          30947835  47 +  31380117 I
e panPan2.chr15             71432514   0 -  99763055 C

a score=1389724.000000
s hg38.chr15_KI270851v1_alt   249377 332 +    263054 ATTGTCATACAATTTCCATTCTTTTTAGCTTTTTCTTAAATATATGA-----CAAA-TACCTACACAAAGAGTGGTATTTCAGTCAATATAGTAAATTTATTTTCCAGACTGACCTTCAGCTTAAATATGCCAGTGTGTGATTTAATCCATAGGCACCTCATGAACACATTATTGTCAGATTGGTTACAGATGCTAAACGCTATCCGAAGGTCATTCCTAGTCACTGATATTTATCAGGGTAAAAGTGAAGTGATTTCAACGATAAAAGTACCTTTGAAATAATTTATCAATGTATTAGATAAA-CCAGTTTCAGAATGATAAAAGAAAAAACGTTAGA
s panTro5.chr15              9640027 333 +  83230942 ATTGTCATACAATTTCCATTCTTTTTAGCTTTTTCTTAAATATATGA-----CAAA-TACCTACACAAAGAGTGGTATTTCAGTCAATATAGTAAATTTATTTTCCAGACTGACCTTCAGCTTAAATATGCCAGTGTGTGATTTAATCCATAGGCACCTCATGAACACATTATTGTCAGATTGGTTACAGATGCTAAACGCTATCCGAAGGTCATTCCTAGTCACTGATATTTATCAGGGTAAAAGTGAAGTGATTTCAACGATAAAAATACCTTTGAAATAATTTATCAATGTATTAGATAAACCCAGTTTCGGAATGATAAAAGAAAAAACGTTAGA
i panTro5.chr15             C 0 I 1
s gorGor5.CYUI01000141v1        9155 333 -    281578 ATTGTCATACAATTTCCATTCTTTTTAGCTTTTTCTTAAATATATGA-----CAAA-TGCCTACACAAAGAGTGGTATTTCAGTCAATATAGTAAATTCATTTTCCAGACTGACCTTCAGCTTAAATATGCCAGTGTGTGATTTAATCCATAGGCACCTCATGAACACATTATTGTCAGATTGGTTACAGATGCTAAACGCTATCCGAAGGTCATTCCTAGTCACTGATATTTATCAGGGTAAAAGTGAAGTGATTTCAACGATAAAAGTACCTTTGAAATAATTTATCAATGTATTAGATAAACCCAGTTTCAGAATGATAAAAGAAAAAACGTTAGA
i gorGor5.CYUI01000141v1    C 0 I 1
s nomLeu3.chr6              44490467 332 - 121039945 ATTGTCATATAATTTCCATTC-TTTTAACTTTTTCTTAAATATATGA-----CAAA-TACCTACACAAAGAGTGGTATTTCAGTCAATATAGTAAATTTATTTTCCAGACTGACCTTCAGTTTAAATATGCCAGTGTGTGATTTAATCCATAGGCACCTGATGAACACATTATTGTCAGATTGGTTACAGATGCTAAAAGCTATCTGAAGGTCATTCCTAGTCACTGATATTTATCACCGTAAAAGTGAAGTGATTTCAAAGATAAAAGTAACTTTGAAATAATTTATTAATGTATTAGATAAACCCAGTTTCAGAATGATAAAAGAAAAAACGTTAGA
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7               8426709 333 + 169600520 ATTGTCCTACGATTTCCATCCTTTTTAGCTGTTTCTTAAATATATGC-----CAAA-TACCTACACAAAGAGTGGAATTTCAGTTAACACAGTAAATTTATTTTCCAGATGGACATTCAGCTGAAATACGCCAGCGTGTGATTTAACCCATCGGCACCTGATGAACACAGTATGGTCAGATTGGTCACAGATGCTAAACACTATCTGAAGGTCATGCCCAGTCACTGATGTTTATCAGGGTAAAAGTGAAGTGATTTCAACGACAAAAGTACCTTTGAAATAATTTATCAATGTATTCGGTAAACCCAGTTTCAGAATGATAAAGAAAAAAACATTACA
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              91224993 328 - 171882078 ATTGTCATATGATTTCCATTCTTTTTAGCTTTCTCTTAAATATACAA-----CAAA-----TACACAAAGAGTGGTATTTCAGTTAATATAGTAAATTTATTTTCCTGACTGACATTCAGCTTCAATATGCCAGTATGTGATTTAATCCATAGGCAGCTGATGAACACATTATTGTCAGATTGGTCACAGATGCTAAACACTATCTGCGGGTCATTCCTGGTCATTGATATTTATCAGGATAAAAGTGAAGTGGTTTCAACGTTAAAAGTACCTTTGAAATAATTTATCGATGTATTAGATAAAGCCAGTTTCAGAATGATAAAG-AAAAAACGTTAGA
i macFas5.chr7              C 0 I 1
s macNem1.NW_012017799v1      406259 328 -   9617498 ATTGTCATATGATTTCCATTCTTTTTAGCTTTCTCTTAAATATACAA-----CAAA-----TACACAAAGAGTGGTATTTCAGTTAATATAGTAAATTTATTTTCCTGACTGACATTCAGCTTCAATATGCCAGTATGTGATTTAATCCATAGGCAGCTGATGAACACATTATTGTCAGATTGGTCACAGATGCTAAACACTATCTGCGGGTCATTCCTGGTCATTGATATTTATCAAGATAAAAGTGAAGTGGTTTCAACGTTAAAAGTACCTTTGAAATAATTTATCGATGTATTAGATAAAGCCAGTTTCAGAATGATAAAG-AAAAAACGTTAGA
i macNem1.NW_012017799v1    C 0 I 1
s cerAty1.NW_012001627v1     4958863 332 +  14009840 ATTGTCATACGATTTCCATTCTTTTTAGCTTTCTCTTAAATATACAA-----CAAA-TATCTACACAAAGAGTGGTATTTCAGTTAATATAGTAAACTTATTTTCCTGACTGACATTCAGCTTCAATATGCCAGTATGTGATTTAATCCATAGGCAGCTGATGAACACATTATTGTCAGATTGGTTACAGATGCTAAACACTATCTGAGGATCATTCCTGGTCATTGATATTTATCAGGATAAAAGTGAAGTGATTTCAACAATAAAAGTACCTTTGAAATAATTTATCAATGTATTAGATAAAGCCAGTTTCAGAATGATAAAG-AAAAAACGTTAGA
i cerAty1.NW_012001627v1    C 0 I 1
s chlSab2.chr26              7573273 334 +  58131712 ATTATCATACAATTTCTATTCTTTTTAGCTTT---TTAAAAAAATAAATTACAAAA-TACCTACACAAAGAGTGGTATTTCAGTTAATACAGTACATTTCTTTTCCAGACTGACATTCAGCTTAAACATGCCAGTGTGTGATTTCACCCATAGGTACCTGATGAACACATTATTGTCAGATTGGTTACAGATGCTAAACACTATCTGAAGGTCATTCCTAGTCATTTATATTTATCAGGGTAAAAGTGAAGTGACTTGAACTATAAAAATACTTTTGAAATAATTTATCAGTGTATCAGGTAAACCCAGTTTCAGTATTATAAAG-AAAAACTGTTAGA
i chlSab2.chr26             C 0 I 1
s manLeu1.NW_012109919v1      112370 332 +   7069685 ATTGTCATATGATTTCCATTCTTTTTAGCTTTCTCTTAAATATACAA-----CAAA-TACCTACACAAAGAGTGGTATTTCAGTTAATATAGTAAACTTATTTTCCTGACTGACATTCAGCTTCAATATGCCAGTATGTGATTTAATCCATAGGCAGCTGATGAACACATTATTGTCAGATTGGTTACAGATGCTAAACACTATCTGAGGATCATTCCTGGTCATTGATATTTATCAGGATAAAAGTGAAGTGATTTCAACAATAAAAGTACCTTTGAAATAATTTATCAATGTATTAGATAAAGCCAGTTTCAGAATGATAAAG-AAAAAACGTTAGA
i manLeu1.NW_012109919v1    C 0 I 1
s cebCap1.NW_016107745v1     1004841 331 -   1842816 ACTGTCATATGATTTCCATTCTTTTTAGTTTTTTCTTAAATAGATGA-----CAAAATACCTACAC--AGAGTGATATTTCAGTTAATATAGTAAATGTATTTTCCAGTCTGACATTCAGCTTAAATATGCCTGTATGTGATTTACTCCATAGGTACTTGATGAACGCATTATTGTCGGATTGGGTACAGATGCTAAACACTATCTGAAGGTCATCCCTAGTCATTTCTATTACTTAGGGTAAAAGTGAAGTGATTTGAACTATCAAAACCCCTTTGAAATAATTTATCAATGTATCAGATAAACGCAGTTTCAGAATGATTAAG-AAAAACTGTTTGA
i cebCap1.NW_016107745v1    C 0 I 1
e canFam3.chr9               5823122   2 -  61074082 I
e aotNan1.NW_018502759v1     9385436  59 +  14477005 I
e otoGar3.GL873533          30947835  47 +  31380117 I
e panPan2.chr15             71432514   0 -  99763055 C
e colAng1.NW_012115677v1     3032994   2 +   3749464 I

a score=258854.000000
s hg38.chr15_KI270851v1_alt   249709 54 +    263054 CAAATA-ATGTGGCTGATTAACAGTGGTCCGATTTCTAGCCCGAGGGTTTAAAAT
s panTro5.chr15              9640361 54 +  83230942 CAAATA-ATGTGGCTGATTAACAGTGGTCCGATTTCTAGCCCGAGGGTTTAAAAT
i panTro5.chr15             I 1 C 0
s gorGor5.CYUI01000141v1        9489 54 -    281578 CAAATA-ATGTGGCTGATTAACAGTGGTCCGATTTCTAGCCCGAGGGTTTAAAAT
i gorGor5.CYUI01000141v1    I 1 C 0
s nomLeu3.chr6              44490800 54 - 121039945 CAAATA-ATGTGGCTAATTAACAGTGGTCTGATTTCTAGCCCGAGAGTTTAAAGT
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr7               8427043 54 + 169600520 AAAATA-ATGTGGCTAATTCACAGTGGTCCAATTTCTAGCCTGAGGGTTTAAAAT
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              91225322 55 - 171882078 CAAATAGAGGTGGCTAATTAACAGTGGTACAATTTCCAGCCCAAGGGTTTAAAAT
i macFas5.chr7              I 1 C 0
s macNem1.NW_012017799v1      406588 55 -   9617498 CAAATAGAGGTGGCTAATTAACAGTGGTACAATTTCCAGCCCAAGGGTTTAAAAT
i macNem1.NW_012017799v1    I 1 C 0
s cerAty1.NW_012001627v1     4959196 55 +  14009840 CAAATAGACATGGCTAATTAACAGTGGTACAATTTCCGGCCCGAGGGTTTAAAAT
i cerAty1.NW_012001627v1    I 1 C 0
s chlSab2.chr26              7573608 54 +  58131712 CAAACA-AGGGGGCTAATTAACAGTGGTATGATTTCTAGCCCAAGGCTCTAAAAT
i chlSab2.chr26             I 1 I 4
s manLeu1.NW_012109919v1      112703 55 +   7069685 CAAATAGACGTGGCTAATTAACAGTGGTACAATTTCCGGCCCAAGGGTTTAAAAT
i manLeu1.NW_012109919v1    I 1 C 0
s calJac3.chr10             72450199 54 - 132174527 CAAATA-ATGTGGCTAATTAAAAGTGGTACGATTTCTAGCCCGAGATTTCAAAAT
i calJac3.chr10             N 0 C 0
s cebCap1.NW_016107745v1     1005173 54 -   1842816 CAAATA-ATGTGGCTGATTAACAGTGGTAGGATTTCTAGCCCGGGGGTTTAAAAT
i cebCap1.NW_016107745v1    I 1 C 0
e canFam3.chr9               5823122  2 -  61074082 I
e aotNan1.NW_018502759v1     9385436 59 +  14477005 I
e otoGar3.GL873533          30947835 47 +  31380117 I
e panPan2.chr15             71432514  0 -  99763055 C
e colAng1.NW_012115677v1     3032994  2 +   3749464 I

a score=27183.000000
s hg38.chr15_KI270851v1_alt   249763 8 +    263054 GCTCTTAA
s panTro5.chr15              9640415 8 +  83230942 GCTCTTAA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        9543 8 -    281578 GCTCTTAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44490854 8 - 121039945 GCTCTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8427097 8 + 169600520 GGACTTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91225377 8 - 171882078 GGACTTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      406643 8 -   9617498 GGACTTAA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4959251 8 +  14009840 GGACTTAA
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      112758 8 +   7069685 GGACTTAA
i manLeu1.NW_012109919v1    C 0 C 0
s calJac3.chr10             72450253 8 - 132174527 GGACGTAA
i calJac3.chr10             C 0 I 8
s cebCap1.NW_016107745v1     1005227 8 -   1842816 GGACTTAA
i cebCap1.NW_016107745v1    C 0 I 127
e canFam3.chr9               5823122 2 -  61074082 I
e aotNan1.NW_018502759v1     9385436 59 +  14477005 I
e otoGar3.GL873533          30947835 47 +  31380117 I
e panPan2.chr15             71432514 0 -  99763055 C
e colAng1.NW_012115677v1     3032994 2 +   3749464 I
e chlSab2.chr26              7573662 4 +  58131712 I

a score=25480.000000
s hg38.chr15_KI270851v1_alt   249771 7 +    263054 AGTAACC
s panTro5.chr15              9640423 7 +  83230942 AGTAACT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        9551 7 -    281578 AGTAACT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44490862 7 - 121039945 AGTAACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8427105 7 + 169600520 AGTAACG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91225385 7 - 171882078 AGTAACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      406651 7 -   9617498 AGTAACT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4959259 7 +  14009840 AGTAACT
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      112766 7 +   7069685 AGTAACT
i manLeu1.NW_012109919v1    C 0 C 0
s calJac3.chr10             72450269 7 - 132174527 TCTTACC
i calJac3.chr10             I 8 C 0
s cebCap1.NW_016107745v1     1005362 7 -   1842816 AGTAACT
i cebCap1.NW_016107745v1    I 127 C 0
e canFam3.chr9               5823122 2 -  61074082 I
e aotNan1.NW_018502759v1     9385436 59 +  14477005 I
e otoGar3.GL873533          30947835 47 +  31380117 I
e panPan2.chr15             71432514 0 -  99763055 C
e colAng1.NW_012115677v1     3032994 2 +   3749464 I
e chlSab2.chr26              7573662 4 +  58131712 I

a score=86746.000000
s hg38.chr15_KI270851v1_alt   249778 16 +    263054 GTCTTTAAACTGAACT
s panTro5.chr15              9640430 16 +  83230942 GTCTTTAAACTGAACT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        9558 16 -    281578 GTCTTTAAACTGAACT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44490869 16 - 121039945 GTCTTTAAACTGAACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8427112 16 + 169600520 GTCTTTAAACTGAACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91225392 16 - 171882078 GTCTTTAAACTGAACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      406658 16 -   9617498 GTCTTTAAACTGAACT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4959266 16 +  14009840 GTCTTTAAACTGAACT
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      112773 16 +   7069685 GTCTTTAAACTGAACT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3032996 16 +   3749464 GTCTTTAAACTGAACT
i colAng1.NW_012115677v1    I 2 C 0
s calJac3.chr10             72450276 16 - 132174527 CTTTCTTTTCTGAACT
i calJac3.chr10             C 0 I 20
s cebCap1.NW_016107745v1     1005369 16 -   1842816 GTCTTTAAACTGAACT
i cebCap1.NW_016107745v1    C 0 C 0
e canFam3.chr9               5823122  2 -  61074082 I
e aotNan1.NW_018502759v1     9385436 59 +  14477005 I
e otoGar3.GL873533          30947835 47 +  31380117 I
e panPan2.chr15             71432514  0 -  99763055 C
e chlSab2.chr26              7573662  4 +  58131712 I

a score=94714.000000
s hg38.chr15_KI270851v1_alt   249794 20 +    263054 CAAAGAATGCAAAAGCGGCA
s panTro5.chr15              9640446 20 +  83230942 CAAAGAATGCAAAAGCGGCA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        9574 20 -    281578 CAAAGAATGCAAAAGCGGCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44490885 20 - 121039945 CAAAGAATGCAAAAGCGGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8427128 20 + 169600520 CAAAGAATGCAAAAGCAGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91225408 20 - 171882078 CAAAGAATGCAAAAGTGGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      406674 20 -   9617498 CAAAGAATGCAAAAGTGGCA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4959282 20 +  14009840 CAAAGAATGTAAAAGCGGCA
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      112789 20 +   7069685 CAAAGAATGCAAAAGCGGCA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3033012 20 +   3749464 CAAAGAATGCAAAAGCGGGA
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1     1005385 20 -   1842816 CAAAGAATGCAAAAGTGGCA
i cebCap1.NW_016107745v1    C 0 C 0
e canFam3.chr9               5823122  2 -  61074082 I
e aotNan1.NW_018502759v1     9385436 59 +  14477005 I
e otoGar3.GL873533          30947835 47 +  31380117 I
e panPan2.chr15             71432514  0 -  99763055 C
e chlSab2.chr26              7573662  4 +  58131712 I
e calJac3.chr10             72450292 20 - 132174527 I

a score=478322.000000
s hg38.chr15_KI270851v1_alt   249814 99 +    263054 AGTTCAGAAAATAAAAGGCGAGAACAGGACTTTAAGTGCATTTTAAA-CCCACGGGCTAGAAATCGTACCACTGTTAATTAGCCGCATTATTTGGTCTAA
s panTro5.chr15              9640466 99 +  83230942 AGTTCAGAAAGTAAAAGGCGAGAACAGGACTTTAAGTGCATTTTAAA-CCCACGGGCTAGAAATCGTACCACTGTTAATTAGCCGCATTATTTGGTCTAA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        9594 99 -    281578 AGTTCAGAAAATAAAAGGCGAGAACAGGACTTTAAGTGCATTTTAAA-CCCACGGGCTAGAAATCGTACCACTGTTAATTAGCCGCATTATTTGGTCTAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44490905 99 - 121039945 AGTTCAGAAAATAAAAGGCAAGAACAGGACTTTAAGTGCATTTTAAA-CCCACGGGCTAGAAATTGTACCACTCTTAATTAGCCGCATTATTTGGTCTAC
i nomLeu3.chr6              C 0 I 312
s rheMac8.chr7               8427148 99 + 169600520 AGTTCAGAAAATAAAAGGCAAGAACAGGACTTTAAGTGCATTTTAAA-CCCATGGGCTAGAAATTGTACCACTGTTAATTAGTCACATTATTTGGTCTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91225428 99 - 171882078 AGTTCAGAAAATAAAAGGCAAGAACAGGACGTTAAGTCCATTTTAAA-CCCACGGGCTAGAAATCCTACCACTGTTAATTAGCCGCATTATTTGGTCTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      406694 99 -   9617498 AGTTCAGAAAATAAAAGGCAAGAACAGGACGTTAAGTCCATTTTAAA-CCCACGGGCTAGAAATCCTACCACTGTTAATTAGCCACATTATTTGGTCTAA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4959302 99 +  14009840 AGTTCAGAAAATAAAAGGCAAGAACAGGACGTTAAGTCCATTTTAAA-CCCGCAGGCTAGAAATCCTACCACTGTTAATTAGCCGCATTATTTGGTCTAA
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      112809 99 +   7069685 AGTTCAGAAAATAAAAGGCAAGAACAGGACGTTAAGTCCATTTTAAA-CCCGCAGGCTAGAAATCCTACCACTGTTAATTAGCCGCATTATTTGGTCTAA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3033032 95 +   3749464 AGTTCAGAAAATAAAAGGCAAGAACAGGACTTTAAGTGCATTTTAAA-CCCATGGGCTAGAAATTGTACCACTGTTAATTAGTCGCATTAT----TCTAA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72450312 90 - 132174527 AGTTCAGT---TTAAAGAC-AGTAC----TTTTAAGTCCATTTTAAA--CCTCAGGCTAGAAATTGTACCACTGCTCATTAGCCACATTATTTGGTCTAA
i calJac3.chr10             I 20 C 0
s cebCap1.NW_016107745v1     1005405 98 -   1842816 AGTTCAGGAA-TAAAACGC-AAAACAGAACTTTAAGTCCATTTTAAACCCCCCCCCCTAGAAATTGTACCACTGTTAATCTGCCGCATTATTTGGTCTAA
i cebCap1.NW_016107745v1    C 0 C 0
e canFam3.chr9               5823122  2 -  61074082 I
e aotNan1.NW_018502759v1     9385436 59 +  14477005 I
e otoGar3.GL873533          30947835 47 +  31380117 I
e panPan2.chr15             71432514  0 -  99763055 C
e chlSab2.chr26              7573662  4 +  58131712 I

a score=301105.000000
s hg38.chr15_KI270851v1_alt   249913 57 +    263054 CATTTTTTCTTTATCATTCTGAAACTGGGTTTATCTAATACATTGATACATTCATAA
s panTro5.chr15              9640565 57 +  83230942 CATTTTTTCTTTATCATTCTGAAACTGGGTTTATCTAATACATTGATACATTCATAA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000141v1        9693 57 -    281578 CATTTTTTCTTTACCATTCTGAAACTGGGTTTATCTAATACATTGATACATTCATAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44491316 57 - 121039945 CATTTTTTCTTTATCATTCTGAAACTGGGTTTATCTAACACATTGATACATTCATAC
i nomLeu3.chr6              I 312 C 0
s rheMac8.chr7               8427247 57 + 169600520 CATTTTTTCTTTATTATTCTGAAACTGGGCTTATCTAATACACTGATATATTCATAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91225527 57 - 171882078 CATTTTTTCTTTATCATTCTGAAACTGGGTTTATCTAATACATTGATACATTCATAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      406793 57 -   9617498 CATTTTTTCTTTATCATTCTGAAACTGGCTTTATCTAATACATTGATACATTCATAT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4959401 57 +  14009840 CATTTTTTCTTTATCATTCTGAAACTGGGTTTATCTAATACATTGATACATTCATAT
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      112908 57 +   7069685 CATTTTTTCTTTATCATTCTGAAACTGGGTTTATCTAATACATTGATACATTCATAA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3033127 57 +   3749464 CATTTTTTCTTTATTATTCTGGAACTGGGCTTATCTAATACATTGATACATTCATAC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72450402 57 - 132174527 CATTTTTTCTTGATAATACTGAAACTGGGTTTATCTGATACACTGTTAAATTCATAC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1005503 57 -   1842816 CAGTTTTCCTTGATCATTCTGAAACTGCGTTTATCTGATACATTGATAAATTCCTAC
i cebCap1.NW_016107745v1    C 0 C 0
e canFam3.chr9               5823122  2 -  61074082 I
e aotNan1.NW_018502759v1     9385436 59 +  14477005 I
e otoGar3.GL873533          30947835 47 +  31380117 I
e panPan2.chr15             71432514  0 -  99763055 C
e chlSab2.chr26              7573662  4 +  58131712 I

a score=356064.000000
s hg38.chr15_KI270851v1_alt   249970 55 +    263054 AATTTGGAAGAGTCAGTTGAAGTCACAAGGACCGAATATTTGCACTCTTTCAGTG
s panTro5.chr15              9640622 55 +  83230942 AATTTGGAAGAGTCAGTTGAAGTCACAAGGACCGAATATTTGCACTCTTTCAGTG
i panTro5.chr15             C 0 N 0
s gorGor5.CYUI01000141v1        9750 55 -    281578 AATTTGGAAGAGTCAGTTGAAGTCACAAGGACCGAATATTTGCACCCTTTCAGTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44491373 55 - 121039945 AATTTGGAAGAGTCAGTTGAAGTCACAAGGACCGAATATTTGCCCTCGTTCAGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8427304 54 + 169600520 AATTTGGAAGAATCAGTTGAAGTCAC-AGGACCCAATATTTGCGCTCTTTCAGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91225584 55 - 171882078 AATTTGGAAGAGTCAGTTGAAGTCACAAGGACCCAATATTTGCACTCTTTCAGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      406850 55 -   9617498 AATTTGGAAGAGTCAGTTGAAGTCACAAGGACCCAATATTTGCACTCTTTCAGTG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4959458 55 +  14009840 AATTTGGAAGAGTCAGTTGAAGTCACAAGGACCCAATATTTGCACTCTTTCAGGG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7573666 55 +  58131712 AATTTGGAAGAGTCCGTTGAAGTCACAAGGACTAAATATTTGCACCCTTTCAGTG
i chlSab2.chr26             I 4 C 0
s manLeu1.NW_012109919v1      112965 55 +   7069685 AATTTGGAAGAGTCAGTTGAAGTCACAAGGACCCAATATTTGCACTCTTTCAGTG
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3033184 55 +   3749464 AATTTGGAAGAGTCAGTTGAAGTCACAAGGACCCAATATTTGCGCCCTTTCAGTG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72450459 55 - 132174527 AATTTGGAAGAGTCAGTTGAAGTCATCAGGACCCAATATTTGCACTCTTTCAGTG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1005560 55 -   1842816 AACTTGGAAGAGTTAGTTCAAGTCACCAGGACCCAATATTTGCACTCTTTTAGGG
i cebCap1.NW_016107745v1    C 0 C 0
e canFam3.chr9               5823122  2 -  61074082 I
e aotNan1.NW_018502759v1     9385436 59 +  14477005 I
e otoGar3.GL873533          30947835 47 +  31380117 I
e panPan2.chr15             71432514  0 -  99763055 C

a score=1484094.000000
s hg38.chr15_KI270851v1_alt   250025 332 +    263054 AATGCCAGCAAATCTGTTATTCCATCGGTAAAATCGTATTGTTGCTCTCCTGTTAATGTCATATTTATAGAAGTATCATGAGGATGCCAAATGCTAAAAATGGAGATGATCTAGTAACTAGAAATCCCCACCGCAGGGAGCACACACACCTATCTCCCTGCATCCTAACAA-TGTGATGTGTTTTGGAACACAGACATTAGAACTTCATGAAGTTTTAACTGTTGAGTCTTTCCCAAGCATCATCAAGTTACGATTTAGGCAATACATAACTGAAATGCATTCATTCATCATGCATAGGCACAATCACATAAATATTGCACAAAATATGTCCC
s gorGor5.CYUI01000141v1        9805 331 -    281578 AATGCCAGCAAATCTGTTATTCCATCGGTAAAATCGTATTGTTGCTCTCCTGTTAATGTCATATTTATAGAAGTATCATGAGGATGCCAAATGCTAAAAATGGAGATGATCTAGTAACTAGAAATCCCCACC-CAGGGAGCACACACACCTATCTCCCTGCATCCTAACAA-TGTGATGTGTTTTGGAACACAGACATTAGAACTTCATGAAGTTTTAACTGTTGAGTCTTTCCCAAGCATCATCAAGTTACGATTTAGGCAATATATAACTGAAATGCATTCATTCATCATGCATAGGCACAATCACATAAATATTGCACAAAATATGTCCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44491428 324 - 121039945 AATGCCGGCAAATCTGTTATTCCATTGGTTAAATCATATCGTGTCTCTCCTGTTAATGTC------ATAGAAGTATCAGGAGGAAGCCAGATGCTAAATCTGGAGATGGTCTAGTAACTAGAAATCCCCACCCCAGGGAGCACACACAC--GTCTCCCTACCTCCTAATAA-TGTCATGTGTTCTGGAACACAGACATTAGAACTTCATGAAGTTTGAACTGTTGAGTCTTTCCCAAGCATCATCAAGTTGTGATTTAGGCAATGTCTGACTGAAATGCATTCATTCATCACGCATAGGCACAATCACATAAATATTGCACAAAACATGTCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8427358 329 + 169600520 AATGCAGGCAAATCTGTTATT-CATCAGTAAAATCGTATT-TTAGTCTCCTGTTAACGTCATATTTATAAAAGTATCATGAGGATGCCAAATGCTGAAAATGGAGACGGTCTAGTAACTAGAAATCCCCACCCCAGGGAGCACACGTACATATCTCCCTACATCCTAATAC-TGTGATGTGTTTT-GGACACAGACATTAGAACCTCATGAAGTTTTAACTGTTGAGTCTTTCCCAAGCATCATCAAGTTATGATTTAGGGAATGTGTGACTGAAATTCATTCATTCCTCATGCATAGGCATGATCACATAAATACTGCACAAAATATGTCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91225639 303 - 171882078 AATGCAGGCATATCTGTTATTCCATGTGTAAAATCGTATTGTTGCTCTCCTGTTAATGTCGTATTTATAAGAGTATC-------------ACGCTAAAAATGGAGATGGTCTAGTAACTAGAAATCCCCACCCCAGGGAGCACACATACACATCTCCCTACATCCTAATAA-GGTGATGTGTTTT---------------GAACTTCATGAAGTTTGAACTGTTGAGTCTTTCCCAAGCATCATCAAGTTATGATTTAGGCAATATATGAATGAAA-TCATTCATTCATCATGGATAGGCACAATCACATAAATATTGCACAAAATATGTCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      406905 303 -   9617498 AATGCAGGCATATCTGTTATTCCATGTGTAAAATCGTATTGTTGCTCTCCTGTTAATGTCGTATTTATAAGAGTATC-------------ACGCTAAAAATGGAGATGGTCTAGTAACTAGAAATCCCCACCCCAGGGAGCACACATACACATCTCCCTACATCCTAATAA-GGTGATGTGTTTT---------------GAACTTCATGAAGTTTGAACTGTTGAGTCTTTCCCAAGCATCATCAAGTTATGATTTAGGCAATATATGAATGAAA-TCATTCATTCATCATGGATAGGCACAATCACATAAATATTGCACAAAATATGTCCC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4959513 316 +  14009840 AATGCAGGCAAATCTGTTATTCCATGTGTAAAATCGTATTGTTGCTCTCCTGTTAATGTCATATTTATAAGAGTATCATGAGGATGCCAAATGCTAAAAATGGAGAGGGTCTAGTAACCAGAAAACCCCACCCCAAGGAGCACACATACACATCTCCCTACATCCTAATAA-GGTGATGTGTTTT---------------GAACTTCATGAAGTTTGAACTGTTGAGTCTTTCCCAAGCATCATCAAGTTATGATTTAGGCAATATATGACTGAAA-TCATTCATTCATCATGCATAGGCACAATCACATAAATATTGCACAACATATGTCCC
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7573721 331 +  58131712 AATGCAGGCAAATCTATTATTCCATCTGTAAAATCATATTATTGCTCTCCTATTAATGTCATATGTATAAAAGTATCATGAGGATGCCAAATGCTAAAAATGGAGATGATCTAGTAACTAGAAATGCCCACCCCAGGGAACGCACATACATCTCTCCCTACATCCTAATAA-AGTGATGTATTTTGGAACATAGACATGAGAACTTCATGAAGTTTTAGCTGTTGATTCTTTCCCAAGCATCATAAAGTTATGATTTAGGCAACGTATGACTGAAA-TAATTCATTCATCATGTACAGACACATTAACATAAATATGGCACAAAATATGCCTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      113020 316 +   7069685 AATGCAGGCAAATCTGTTATTCCATGTGTAAAATCGTATTGTTGCTCTCCTGTTAATGTCATATTTATAAGAGTATCATGAGGATGCCAAATGCTAAAAATGGAGAGGGTCTAGTAACTAGAAATCCCCACCCCAGGGAGCACACATACACATCTCCCTACATCCTAATAA-GGTGATGTGTTTT---------------GAACTTCATGAAGTTTGAACTGTTGAGTCTTTCCCAAGCATCATCAAGTTATGATTTAGGCAATATGTGACTGAAA-TCATTCATTCATCATGCATAGGCACAATCACATAAATATTGCACAACATATGTCCC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3033239 332 +   3749464 AATGCAGGCAAATCTGTTATTCCATCGATAAAATCGTATT-TTGGTCTCCTGTTATTGTCATATTTATAAAAGTGTCATGACGATGCCAAATGCTGAAAATGGAGATGGTCTAGTAACTAGAAATCCCCACCCCAGGGAGCACACGTAGATATCTCCCTGTATCCTAATAACTGTGATGTGTTTTGGAACACAGACATTAGAACCTCATGAGGTTTTAACTGTTGAGTCTTTCCCAAGCATCATCAAGTTATGATTTAGGCAATGTGTGACTGCAACTCATTCATTCATCGTGCATAGGCACAATCACATAAATATTGCACAAAATACGTCCC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72450514 330 - 132174527 AATGCAGGGAAATCTGTTATTCCATCTGTACAATCATATTATTGTTCTGTTATTAATGTCATATTTATAAAAGTATCATGAGGAGGCCAAATGCTAAAAATGGAGATGGCCTAGTAACTAGAAATCCCCAC-CCAGGGAGCACACATACGTATCTCCCTACATCCTAATCA-TGGGACTTATTTTGGAACAAAGATATTATAACTTCATGAAGTTTCAACTGTTGATTCTTTCTCAAGCATCACAATGTTATGAGTTAGGATACGTATGACTGAAA-TAATTCATTCATAATGTATAGGCACATTACCATAAATATTGCACAAAATATGCCAC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1005615 315 -   1842816 AATGCAGGGAAATGTGTTATTCCATCTGTAAAATCGTATTAATGATCTCCTATTAATGTCATATTTATGAAAGTATCATGAGGATGCCAAATGCTAAACATGGAGATGGTC-AGTAACTAGGAATCTCCACTTCAGGGAGCA---------------CTCCATCCTAACAA-TGGGACGTATTTTGGCACACAGACATTAGAACTTCATGAAGCTTCAACTGTTGATTCTGTCCCAAGCATCATAAAGTTATGATTTAGGCAATGTCTGACTGAAA-GAATTCATTCATAATGTAGAGGCACATTAACAGAAATCTTGCACAAAATATGCCTC
i cebCap1.NW_016107745v1    C 0 C 0
e canFam3.chr9               5823122   2 -  61074082 I
e aotNan1.NW_018502759v1     9385436  59 +  14477005 I
e otoGar3.GL873533          30947835  47 +  31380117 I
e panPan2.chr15             71432514   0 -  99763055 C

a score=1957319.000000
s hg38.chr15_KI270851v1_alt   250357 485 +    263054 GAACAGAAACCCAGAGGTACAAAAACATATTTCA--CTTTGTAAAGAAGTCTGTGAGAAAATATAACTCTGTGATTGTATAGACACGTTTCCTGATAATA-----CATTGACATTCACGAACAGTAGATTGCACTGCAGTTTGTACACATTTTAAGTTTCATAAACTTCTCCTTGATTTTCAAAGATAGTATAATACCGTCTACTAAAACTCCTTTTTGTTTCAACTAAGTA-TCTCACATATATTAGTTTATAATAATGTT--------------------TC-TATTA-TTTTTTAAAGT-GTTTTCCATTCAAGGAAAAGGAAGTAAATTCCTATGTCAGAGTAACCAAGGTGG----TTGAAGAATAGGTATTAGCCAAAGAGGTCTAGATGGTAAAATCAATCTTCAAGCCTCAAAGAATATCCGTGAACAGAGAGGAATTCCAGGTGTCACACAGCTTTCCTTCACTCTAATTCATTCTTGACTAGAGCCTGTATGCCTGTTCCAGGGACGTTT
s gorGor5.CYUI01000141v1       10136 488 -    281578 TAACAGAAACCCAGAGGTACAAAAACATATTTCA--CTTTGTAAAGAAGTCTGTGAGAAAATATAACTCTGTGATTGTATAGACACGTTTCCTGATAATATAATACATTGACATTCATGAACAGTAGATTGCACTGCAGTTTGTACACATTTTAAGTTTCATAAACTTCTCCTTGATTTTCAAAGATAGTATAATACCGTCTACTAAAACTCCTTTTTGTTTCAACTAAGTA-TCTCACATATATTAGTTTATAATAATGTT--------------------TC-TATTA-TTTTT-AAAGT-GTTTTCCATTCAAGGAAAAAGAAGTAAATTCCTATGTCAGAGTAACCAAGGTGG----TTGAAGAATAGGTATTAGCCAA-GAGGTCTAGATGGTAAAATCAATCTTCAAGCCTCAAAGAATCTCCGTGAACAGAGAGGAATGCCAGGTGTCACACAGCTTTCCTTCACTCTAATTCATTCTTGACTAGAGCCTGTATGCCTGTTCCAGGGACATTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44491752 469 - 121039945 TAACTGAAACCGAGAGGTACAGAAACATATTTCACTCTTTGTAAAGAAGTTTGTGAGAAAATATAACTGTGTGATTGTATAGACACGTTTCCTGATAATA-----CATCGACGTTCACGAACAGTAGATTGCACTGCAGTTTGTAAACATTTTAAGTTTCATAAAC--CTCCTTGATTTTCAAAGATAGTATAATACTGTCTACTAAAATTCCTTTTTGTTTCAACTAAGTACTCTCACACGTATTAGTTTATAATAATGTT--------------------TCTTATTA-TTTTTTAAAGT-GTTTTCCATTC----AAAAAGAAGTAAATTCCTATGTCAGAGTAACCAAGGTGG----ATGAAGAATAGGTATTAGCCAGAGAGGTCTAGATGGTAAAATCAATCTTCAAGCCTCAAAGAAGCTCCGTGAACAGAGAGGAATGCCAGGTGTCACACAGCTTTCCTTCACTCTAATTCATTCTTGGCTA--------------GTTCCAGGGACATTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              91225942 487 - 171882078 TAACTGAAACCAAGAGATACAAAAACATATTTCACTCTTTGTGAAGAAGTTTGTGAGGAAATATAGCTCTGTGATTGTATAGACACGTTTCCTGATAATA-----CATTGACATTCACAAGCAGTAGATTGCACTGTAGTTTATAAACATTTTAAATTGCATAAACTTCTCCTTGAATTTCAAATATAGTATAATACTGTCTACTGTAACTCCTTTTTGTTTCAACTAAGTACTCTCACATATATTAGTTTATAATAATGTT--------------------TGTTATTA-TTTTTTAAAGT-GTTTTCCATTCAAG-GAAAAGAAGTAAATTCCTATGTCAGAGTAACCAAGGTGG----TTGAAGAATAAGTATTATCCAGAGAGGTCTAGATGGT-AAATCAATCTTCAAGCCCCAAAGAAGCTCCATGAACAGAGAGGAATGCCAGGTGTCACACAGCTTTCCTTCACTCTAATTCATTCTTGACTAGAGCACATATGCCTGTTCCAGGGACATCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      407208 487 -   9617498 TAACTGAAACCAAGAGATACAAAAACATATTTCACTCTTTGTGAAGAAGTTTGTGAGGAAATATAGCTCTGTGATTGTATAGACACGTTTCCTGATAATA-----CATTGACATTCACAAGCAGTAGATTGCACTGTAGTTTATAAACATTTTAAATTGCATAAACTTCTCCTTGAATTTCAAATATAGTATAATACTGTCTACTGTAACTCCTTTTTGTTTCAACTAAGTACTCTCACATATATTAGTTTATAATAATGTT--------------------TGTTATTA-ATTTTTAAAGT-GTTTTCCATTCAAG-GAAAAGAAGTAAATTCCTATGTCAGAGTAACCAAGGTGG----TTGAAGAATAAGTATTATCCAGAGAGGTCTAGATGGT-AAATCAATCTTCAAGCCCCAAAGAAGCTCCATGAACAGAGAGGAATGCCAGGTGCCACACAGCTTTCCTTCACTCTAATTCATCCTTGACTAGAGCCCATATGCCTGTTCCAGGGACATCT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4959829 488 +  14009840 TAACTGAAACCGAGAGGTACAAAAACATATTTCACTCTTTGTAAAGAAGTTTGTGAGGAAATATAACTCTGTGATTGTATAGACACATTTCCTGATAATA-----CATTGACATTCACAAGCAGTAGGTTGCACTGCAGTTTATAAACATTTTTAATTGCATAAACTTCTCCTTGAATTTCAAATATAGTATAATACTGTCTACTATAACTCCTTTTTGTTTCAACTAACTACTCTCACATATATTAGTTTATAATAATGTT--------------------TGTTATTATTTTTTTAAAGT-GTTTTCCATTCAAG-GAAAAGAAGTAAATTCCTATGTCAGAGTAACCAAGGTGG----TTGAAGAACAGGTATTAGCCAGAGAGGTCTAGATGGT-AAATCAATCTTCAAGCCCCAAAGAAGCTCCGTGAACAGAGAGGAATGCCAGGTGCCACACAGCTTTCCTTCACTCTAATTCATTCTTGACTAGAGCCGGTATGCCTGTTCCAGGGATATTT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7574052 486 +  58131712 TAACTGAAACTGAGAGGTACAAAAACATAGTTCACTCTTTGTAAAGAACTTTGTGGGGAAACATAACTCTGTGATTGTATAGACACTTTTCCTCATAACA-----CTTTGAGCTTCACAAACAGTAGATTGCACTGCAGTTTGTAAACATTTTAAGTTGCATAAACTTCCCCTTGATTTTCAAATGTAGTATAATACTGTCTACTAAAACTCCTTTTTGTTTCAACTAA-TACTCTTACATATATTGGTTTATAATAATGGT--------------------CGTTATTA--TTTTTAAAGT-GTTTTTCATTCAAA-GAAAAGAAGCAAATTCCTGTGTCAGATTAACCAATGTGG----TTGAAGAACAGGTATTAGCCAGAGAGGTCTAGATGGTAAAATCAATCTTCTAGCCTCAAAGAAGCTCCATGAACATAGAGGAATGCCAGGTGTCACACAGCTTTCCTTCACTCGAATTCGTTCTTGACTAGAGCCTGTATGCCTGTTCCAGGGACGTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      113336 488 +   7069685 TAACTGAAACCGAGAGGTAGAAAAACATATTTCACTCTTTGTAAAGAATTTTGTGAGGAAATATAACTCTGTGATTGTATAGACACATTTCCTGATAATA-----CATTGACATTCACAAGCAGTAGATTGCACTGCAGTTTATAAACATTTTTAATTGCATAAACTTCTCCTTGAATTTCAAATATAGTATAATACTGTCTACTGTAACTCCTTTTTGTTTCAACTAAGTACTCTCACATATATTAGTTTATAATAATGTT--------------------TGTTATTATTTTTTTAAAGT-GTTTTCCATTCAAG-GAAAAGAAGTAAATTCCTATGTCAGAGTAACCAAGGTGG----TTGAAGAACAGGTATTAGCCAGAGAGGTCTAGATGGT-AAATCAATCTTCAAGCCCCAAAGAAGCTCCGTGAACAGAGAGGAATGCCAGGTGCCACACAGCTTTCCTTCACTCTAATTCATTCTTGACTAGAGCCTGTATGCCTGTTCCAGGGATATTT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3033571 487 +   3749464 TAACTGAAACCAAGAGGTACTAAAACATATTTCACTCTTCGTAAAGAGGTCTGTGAGGAAATACAACTCTGTGATTGTACAGACACGTTTCTTGATAATA-----CATTGACATTCACAAACAGTAGATTGCACTGCAGCTTCTAAACATTTTAAGTTTCATAAACTTCTCCTTGATTTTCAAAGATACTATAATACTGTCTACTAAAACTCCTTTTTGTTTCAACTAAGTATTCCCGCATATATTAGTTTATGATAATGTT--------------------TGTTATTA-TTTTTCAAAGT-GTTTTCCATTCAAC-GAAAAGAAGTAAATTCCTATGTCAAAGTAACTAAGGTGG----TTGAAGAATGGGTATTAGCCAGAGAGGTCTAGATGGTAAAATCAGTCTTCAAGCCTCAAAGAAGCTCCATGAACAGAAAGGAAAGCCAGGTGTCACACAGCTTTTCTTCACTCTAATTCATTCTTGACTAGAGCCTGTATGCCTGTTCCAGGGACAT-T
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72450844 475 - 132174527 TAACTGAAACCAAGAGATAGAAAAACATACTTCACTCTTCGTAAAGAATTTGGTG-GGAGACAGAACTCTGTGATTGCATAGACACTTTTCCTGATAATA-----GTTTGACGTTCACAAACAGTAGATTGCATTGCAGCTCGTAAACG---TAAGTTGCATAAACTTCTCCTTGACGTTCAAATATAGTATA---CTGTCTACTGAAACTCCTTTTTGTTTCAACTAAGTACTCTCACGTATATTAGTTTATAATAATGTC--------------------TGTGATTC-TTTTTTAAAGTGTTTTTTTATTCAAG-AAAAAGAAGTAAATTCCTGTGTCAGAGTAACCAATGTGGTTACTTGAGGAATAGGTATTAGCCAGAGAAGTCTGGATGGTCAAATCAATCTTCTAGCCTCAAAGAAGCTTCATAAACA-----------CAGGTGTCACTCAGCTTTCCTTCACTCTAATTCATTCTTGACAAAAACTCATATGCCTGTTTCAGGGACATTT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1005930 502 -   1842816 TAACTGAAACCGAAAGATATCAAAACATATTTCACTCTTGGTAAAGAACTTGGTGAGGAAATAAAACTCTGTGATTGTACAGACACTTTTCCTGATAATA-----CGTTGACATTCACAAACAGTAGATGGCACTGCAGTCTATAAACATTTTAAATTGCATAAACTT---CTTGATTTTCAAATATAGTACAATTCTCCCTACTGAGACTCCTTTTTGTTTCAGCCAAGTACTCTCACATATATTAGTTTATAATCATGTCTGTGATTATTATATTTTGTTTGTGATTA-TTGTTTAAAGT-CCTTTTTATTGAAG-AAAACGAAGGCAATTCCTATGTCAGAGTAACCAAGGTGG----TTGAAGAATAGGCATTAGCCAGAGAAGTATGGATGGTCAAATCAG---TCCAGCCTCAGAGAAGCTCCATGAACACAGAGGGATGCCAGGTGTCACACGGCTTTCCTGCACTCTAGTCCATTATTGACTACAACCTGTATGCCTGTTCCAGGGACATTT
i cebCap1.NW_016107745v1    C 0 I 331
e canFam3.chr9               5823122   2 -  61074082 I
e aotNan1.NW_018502759v1     9385436  59 +  14477005 I
e otoGar3.GL873533          30947835  47 +  31380117 I
e panPan2.chr15             71432514   0 -  99763055 C
e rheMac8.chr7               8427687   0 + 169600520 C

a score=-3421.000000
s hg38.chr15_KI270851v1_alt   250842  7 +    263054 GAACTCA------------------------------------------------------------------------------
s gorGor5.CYUI01000141v1       10624  7 -    281578 GAGCTCG------------------------------------------------------------------------------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44492221  7 - 121039945 GAACTCG------------------------------------------------------------------------------
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              91226429  7 - 171882078 AAACTCT------------------------------------------------------------------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      407695  7 -   9617498 AAACTCT------------------------------------------------------------------------------
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4960317  7 +  14009840 AAACTCT------------------------------------------------------------------------------
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7574538  7 +  58131712 AAACTCT------------------------------------------------------------------------------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      113824  7 +   7069685 AAACTCT------------------------------------------------------------------------------
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3034058  7 +   3749464 AAACTCT------------------------------------------------------------------------------
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72451319 85 - 132174527 AAACTCTTAAAGTTACTAGATGGTCTAGTAACTCTCCCTGGGGAAGGTACGGAAGACCGCTACTTACTAGACCATCCCCATCTCT
i calJac3.chr10             C 0 C 0
e canFam3.chr9               5823122  2 -  61074082 I
e aotNan1.NW_018502759v1     9385436 59 +  14477005 I
e otoGar3.GL873533          30947835 47 +  31380117 I
e cebCap1.NW_016107745v1     1006432 331 -   1842816 I
e panPan2.chr15             71432514  0 -  99763055 C
e rheMac8.chr7               8427687  0 + 169600520 C

a score=1277638.000000
s hg38.chr15_KI270851v1_alt   250849 305 +    263054 TAAAGGATTTGTTATGATCTTCACT-------------AAATACATTAAGAAGAATGCCAACCAGTGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTAAAACAGGTAACATGAACTC-TGACTTTAAAATGTATTGTAGATACAAATGCTCTAAGCTAGGAAAGGTTTTCCACATCCACAGTCAACGATGGGAACCTTTCATTCCTCAGAAATAAGCCCTTTTTAGGTCATCCAAAAAGAGTGCAACTGCTGCAGCTCATGATGCAATATCTTCATGAGCCCAGAGCACATAGAAATCCTAAGGGAACCACCAT
s gorGor5.CYUI01000141v1       10631 305 -    281578 TAAAGGATTTCTTATGATCTTCACT-------------AAATACATCAAGAAGAATGCCAACCAGTGCCCTTTTGTGTACTGGGGCATGTAGTCATGTGATTAAAACAGGTAACATGAACTC-TGACTTTAAAATGTATTGTAGATACAAATGCTCTAAGCTAGGAAAGGTTTTCCACATCCACAGTCAATGATGGGAACCTTTCATTCCTCAGAAATAAGCCCTTTTTAGGTCATCGAAAAAGAGTGCAACTGCTGCAGCTCATGATGCAATATCTTCATGAGCCCAGAGCACATACAAATCCTAAGGGCACCACCAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44492228 317 - 121039945 TAAAGGATTTCTTATGATCTTCACTAAATACATTAAGAAAATACATTAAGAAGAATGCCAACCAGTGCCC-TTTGTGTACTGAGGCATGTAGTCATGTGATTAAAATAGGTAACATGAACTC-TGACTTTAAAATGTATTATAGATACAAATGCTCTAAGCTAGGAAAGGTTTTCCACATGCACAGTCAATGATGGGAACCTTTCATTCCTCAGAAATCATCCCTTTTTAGGTCATCGAAAAAGAGTACAACTGCTGCAGCTCATGATGCAATATCTTCATGAGCCCAGAGCACATACAAATCCTAAGGGAACCACCAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              91226436 305 - 171882078 TAAAGGATTTCTTATGATCTTTACT-------------AAATACGTTAAGAAGAATGCCAACCAGCACTCTTTTGTGTACTGGGACATGTGGCCATGGGATTAAAACAGGTAACATGAACTC-TGACTTTAAAATGTATTATAGATACAAATGCTCTAAGCTAGGAAAGGTTTTCCATATCTACAGTCAACCATGGGAGCCTTTCATTCCTCAGAAATAATCCCTTTTTAGGTCATCGAGAAAGAGCACAACTGCTGCAGCTCATGGTGCAACATCTTCATGAGCCCAGAGCACACACAAATCCTGAGGGAACTACCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      407702 305 -   9617498 TAAAGGATTTCTTATGATCTTTACT-------------AAATACGTTAAGAAGAATGCCAACCAGCACTCTTTTGTGTACTGGGACATGTGGCCATGGGATTAAAACAGGTAACATGAACTC-TGATTTTAAAATGTATTATAGATACAAATGCTCTAAGCTAGGAAAGGTTTTCCATATCTACAGTCAACCATGAGAGCCTTTCATTCCTCAGAAATAATCCCTTTTTAGGTCATCGAGAAAGAGCACAACTGCTGCAGCTCATGGTGCAACATCTTCATGAGCCCAGAGCACACACAAATCCTGAGGGAACTACCAC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4960324 305 +  14009840 TAAGGGATTCCTTATGATCTTTACT-------------AAATACATTAAGAAGAATGTCAACCAGCACTCTTTTGTGTACTGGGACATGTGGTCACGGGATTAAAACAGGTAACATGAACTC-TGACTTTAAAATGTATTATAGATACAAATGCTCTAAGCTAGGAAAGGTTTTCCATATCTACAGTCAATGACAGGAGCCTTTCATTCCTCAGAAATAATCCCTTTTTAGGTCATCGAGAAAGAGTACAACTGCTGCAGCTCATGGTGCAATATCTTCATGAGCCCAGAGCACACACAAATCCTGAGGGAACTACCAT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7574545 295 +  58131712 GAAAGGATTTCTGATGATCTTCACT-------------AAATACATTAAGAAGAATATCAACCAGTGCCATTTTGTGTACTGGGACATGTCGTCATGTGATTAAAACAGGTAACATGAACTC-TGACATTAAAATGTATTGTGGATATGAAAGCTCTAAGCTAGAAAAGATTTTCCACATCCACAGTCAATGACGGGAGCCTTTCATTCTTCAGAAATAATC-CCTTTTAGGTCATTGAGAAAGAGTCCAACTGCTGCAGCTTATGATGCAATATCTTCATGAACCCAGAGCACATACAAATCCTAAGGG---------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      113831 305 +   7069685 TAAGGGATTTCTTATGATCTTTACT-------------AAATACATTAAGAAGAATGTCAACCAGCACCCTTTTGTGTACTGGGACATGTGGTCACGGGATTAAAACAGGTAACATGAACTC-TGACCTTAAAATGTATTATAGATACAAATGCTCTAAGCTAGGAAAGGTTTTCCATATCTACAGTCAACGATGGGAGCTTTTCATTCCTCAGAAATAATCTCTTTTTAGGTCATCGAGAAAGAGTACAACTGCTGCAGCTCATGGTGCAATATCTTCATGAGCCCAGAGCACACACAAATCCTGAGGGAACTACCAT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3034065 306 +   3749464 TAAAGGATTTCTTATGATCTATACT-------------AAATACATTAAGAAGAATGCCAGGCAGCACCCTTTTGTGTACTGGGCGCTATAGTCACGTGATTAAAACAGGTACCATGAACTCTTAACTTTAAAATGTATTCCAGATACCAGTGCTCTAAGCTAGGAAAGGTTTTCCACATCCACAGTCAACGATGTGAACCCTTCATTCCTCAGAAATAATCCCTTTTTAGGTCATGGAAAAAGAGTACAACTGCTGTAGCTCGTGATGTAATATCTTCATGAGCCCAGAGCACACACAAATCCTAAGGGAACTACCAT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72451404 301 - 132174527 TAAAGGATTTCTTATGATCTTTATT-------------AAATACATT---AAGAATGCCAACCAGTGCCCTTTTGTGTACTGGGACATGTGGTTATGTGGTTAAAACAGGTAACGTGAACTC-TGACTTTAAAATATATTATAGATATAAATACTCTAAACTAGGAAAGGTTTTTCACATCCACAGTCAATGATAGGAGCCTTTGATTCCTCAGAAATCATCC-TTTTTAGGTCATTGGAAATGAGTACAGCTGCTGCAGCTCATGATGCAATATCTTCATGAGCCCAGAGCACAGAAAAATCCTAAGGGAACTACCAT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1006763 303 -   1842816 TAAAGGATTTCTTATGCTCTTTGCT--------------AATACATTAAGAAGAATGCCAACCAGTGCCCTTTTGTGTACTGAGACTTAGAGTCATGTCATTAAAACAGGTAACATAAACTC-TGACTTTACAATGTATTATAAATATAAATGCTCTAAACTAGGAAAGGTTTTTCACACCTACAGTCAAAGATGGGAACCTTTTATTCCT-AGAAATCACCCTTTTTTAGGTCATCAAAAAAGAGTGCAGCTGCCGCGGCTCATGATACAGTATCTTCATGAGCCCAGAGCACAGAGGAACCCTAAAAGAACTGCCAT
i cebCap1.NW_016107745v1    I 331 I 35
e canFam3.chr9               5823122   2 -  61074082 I
e aotNan1.NW_018502759v1     9385436  59 +  14477005 I
e otoGar3.GL873533          30947835  47 +  31380117 I
e panPan2.chr15             71432514   0 -  99763055 C
e rheMac8.chr7               8427687   0 + 169600520 C

a score=100555.000000
s hg38.chr15_KI270851v1_alt   251154 38 +    263054 AATATACTGCTAATTCCTGGCACCGGAACAGATGAAAC
s gorGor5.CYUI01000141v1       10936 38 -    281578 AATACACCGCTAATTCCTGGCACCGGAACAGATGAAAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44492545 38 - 121039945 AATACAGCGCTAATTCTTGGCACCGGAACAGATGAAAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              91226741 38 - 171882078 AGTACAGCGCTCATTCTTGGTACCGGAACAAATGAAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      408007 38 -   9617498 AGTACAGCGCTCATTCTTGGTACCGGAACAAATGAAAC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4960629 38 +  14009840 AGTACAGCGCTCATTCTTGGCACCGGAACAAATGAAAC
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      114136 38 +   7069685 AGTACAGCGCTCATTCTTGGCACCGGAACAAATGAAAC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3034371 38 +   3749464 AGTACAGCGCTCATTCTTGGCACCGGAACCAGTGAAAC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72451705 38 - 132174527 AGTACAGTGCTCATTCTTGGCTTGTGAACCAATGACAC
i calJac3.chr10             C 0 C 0
e canFam3.chr9               5823122  2 -  61074082 I
e aotNan1.NW_018502759v1     9385436 59 +  14477005 I
e otoGar3.GL873533          30947835 47 +  31380117 I
e cebCap1.NW_016107745v1     1007066 35 -   1842816 I
e panPan2.chr15             71432514  0 -  99763055 C
e rheMac8.chr7               8427687  0 + 169600520 C
e chlSab2.chr26              7574840  0 +  58131712 C

a score=727234.000000
s hg38.chr15_KI270851v1_alt   251192 175 +    263054 ACACTC---TATCCTGCACATACCTGCCAGAGGAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCTCCCCCAAAAGGTTATCACTCCCATCACCAATACACAGAAAATGGAGGAAAGGCTGTTTCCAGTTCTTGGCCTTTAAACAACTCTAAATGTCAGTACTCATAGTGGCATAT
s gorGor5.CYUI01000141v1       10974 173 -    281578 ACACTC---TATCCTGCACATACCTGCCAGAGGAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCTCCCCCAAAAGGTT-TCACTCCCATCACCAATACACAGAAAATGGAGGAAAGGCTGTTTCCAGTTCTTGGCCTTTAAACAACTCTAAATGTCAGTACTCAT-GTGGCATAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44492583 175 - 121039945 ACACTC---TATCCTGCACATACCTGCCAGAGCAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCTCCCCCAAAAGGTTATGACTCCCATCACCAATACACAGAAAATGGAGGAAAGGCTCTTTCCAGTTCTCGGCCTTTAAACAACTCTAAATGTCAGTACTCATAGTGGCATAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              91226779 173 - 171882078 ACACTC---TATCCCGCACACACCTGCCAGAGCAGGCCACTTTCCTCTTCTGTGAGATTTAAAAATC--CCCCAAAATGTTATTACTCCCATCACCAATACACAGAAAATGGGGGAAAGGCTGTTTCCAGTTCTCAGCCTTTAAACAACTCTAAATGTCAGTACTCACAGTGGCATAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      408045 173 -   9617498 ACACTC---TATCCCTCACACACCTGCCAGAGCAGGCCACTTTCCTCTTCTGTGAGATTTAAAAATC--CCCCAAAATGTTATTACTCCCATCACCAATACACAGAAAATGGGGGAAAGGCTGTTTCCAGTTCTCAGCCTTTAAACAACTCTAAATGTCAGTACTCACAGTGGCATAT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4960667 173 +  14009840 ACACTC---TATCCCGCACACACCTGCGAGAGCAGGCCACTTTCCTCTTCTGTGAGATTTAAAAGTC--CCCCAAAATGTTATTACTCCCATCACCAATACACAGAAAATGGGGGAAAGACTGTTTCCAGTTCTCAGCCTTTAAACAACTCTAAATGTCAGTACTCATAGTGGCATAT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7574840 166 +  58131712 ---------TACCC--CACACACCTGCCAGAGCAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCT-CCCCAAAATGTTATCACTCCCATCCCCAATACACAGAAAATAGGGGAAAAGCTGTTTCCAGTTCTCGGCCTTTAAACAACTCTAAATGTCAGTACTCACGGGGGCATAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      114174 175 +   7069685 ACACTC---TATCCTGCACACACCTGCCAGAGCAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCTCCCCCAAAATGTTATTACTCCCATCACCAATACACAGAAAATGGGGGAAAGACTGTTTCCAGTTCTCAGCCTTTAAACAACTCTAAATGTCAGTACTCATAGTGGCATAT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3034409 175 +   3749464 ACACTC---GATCCCGCACATATCTGCCGGAGCAGGCCACTGTCCTCTTCTGTGAGATTTAAAAAGCTCCCCCAAAATGTTATTACTCCCATCACCAGTACACAGAAAATGGGGGAAAGGCTGTTTCTAGTTCTCGGCCTTTAAACAACTCTAAATATCAGTACTCACGGTGGCATAT
i colAng1.NW_012115677v1    C 0 I 2
s calJac3.chr10             72451743 174 - 132174527 TTACTCTATTATTCTGCACATACCTGCCAGAGCAGCCCACTT---TCTTCTGTGAGATTTAAAAAGCT-CTGCAAAATGTTATTACTCCCATCCCAAAGACACTGAAAACAGGGGAAAGGCTGTTTCCAGTTCTCGGCCTTTCAGCAACTCTAAATGTCAGCACTCATAGTGGCATCT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1007101 173 -   1842816 ATACTC---TATTCTGCACATACCTGCCAGAGCAGGCCACTTTCCTCTTCTGTGAGATTTTAAAAGCT-CCCCAAAATGTTATTACTCCATTTGCAATG-CACAGAAAATGGAAGAAAGGCTGTTTCCAGTTCTCGGCTTTTCAACAACTCTAGATGTCAGTACTCATAGTGGCACCT
i cebCap1.NW_016107745v1    I 35 C 0
e canFam3.chr9               5823122   2 -  61074082 I
e aotNan1.NW_018502759v1     9385436  59 +  14477005 I
e otoGar3.GL873533          30947835  47 +  31380117 I
e panPan2.chr15             71432514   0 -  99763055 C
e rheMac8.chr7               8427687   0 + 169600520 C

a score=2021096.000000
s hg38.chr15_KI270851v1_alt   251367 419 +    263054 TACAAAGTAAGAAACAGTGCACACTTGGGGGCAAACTACATATTGAGCTAACGAAGAGCTCACTGTGATTAAGATTAGATCAAAC--AACAGCAGAACATAGGCAAATTTTGTCTGAATTCTGTAGTGAATATACATGCTGCAATAACATTAAAAAAGCATGGCAGCCTATTCCAAACCAGCGAGAACAGTTTTGGGCAAAGAGTGGGTCTTTGTGTGTTTGAACTCCCACCACGTAAGGGCAAACTCGATATGCATGCTAATGACCTACAATTATGAAATTAAAAAAG-AAAAATGCTAAAAGGATGCCAGAGTGAACATCAGTGAGAGCCACA--GACACCCACTCTCTTTTAACTTTTTATAAATAAACTTAAACTATAAATTAGAAACACAAATAATCATGAGTGACTCTAACATTCAAA
s gorGor5.CYUI01000141v1       11147 418 -    281578 TACAAAGTAATAAACAGTGCACACTTGGGGGCAAACTACATATTGAGCTAACGAAGAGCTCACTGTGATTAAGATTAGATCAAAC--AACAGCAGAACATAGGCAAATTTTGTCTGAATGCTGTAGTGAATATACATGCTGCAATAACATTAAAAAAGCATGGCAGCCTATTCCAAACCAAAGAGAACAGTTTTGGGCAAAGGGTGGGTCTTTGTGTGTTTGAACTCCCACCACGTAAGGGCAAACTCGATATGCATGCTAATGACCTACAATTATGAAATTAAAAAAG-AAAAATGCTAAA-GGATGCCAGAGTGAACATCAGTGAGAGCCACA--GAGACCCACTCTCTTTTAACTTTTTACGAATAAACTTAAACTATAAATTAGAAACACAAATAATCATGAGTGACTCTAACATTCAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44492758 418 - 121039945 TACAAAGTAATAAACAGTGCACACTTGGGGGCAAACCACATATAGAGCTAATGAAGAGCTCACTGTGATTAAGATTAGATCAAAC--ACTAGCAGAACATAGGCAAATTTTATCTGAATTCTGTAATGAATATACATGCTGCAATAACATTAAAAAAGCATGGCAGCCTATTCCAAACCAACGAGAACAGTTTTGTGCAAAGAGTGGGTCTTTGCGTGTTTGAATTCCCACCACATAAGGGCAAACTCGATATGCATGCTAATGACCTGCAATTATGAAATTAAGAAAG-AAAAATACTAAA-GGATGCCAGAGTGAACATCAGTGAAAGCCACA--GAGACCCACTCTCTTTTAACTTTTTACAAATAAACTTAAACTATAAAATAGAAACACAAATAATCATGAGTGGCTCTAACATTCAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8427687 417 + 169600520 TACAAAGTAATCAACAGTGCACACTTGAGGGCAAACCGCATATTGAGCTAATGAAGGGCTCACTGTGATTAAGATTGGATCAAAC--AGTAGCAGAACATAAGCAAATTTTATCTGAATTCTGTAATGAACATACATGCTATAATAACATTACAAAAGCATGGCAGCCTATTCCAAACCAGCGAGAATAGTTCTGTGCAAACAGTGGGTCTTTGGGTGTTTGAACTCCCACCACGTAAGGGCAAACTCGATATACATGCTAATGACCTACAATTATGAAATTAAAAAAG--AAAATGCTAAA-GGATGCCAGAGTGAACCTCAGTGAAGGCCACA--GAGACCCAATCTCTTTTAACTTTTTACAAATAAACTTAAACTACAAACTAGAAACACAAATAATCAAGAGTGGCTCTAACATTCAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91226952 418 - 171882078 TACAAAGTAATAAACAGTGCACACTTGGGGGCAAACCACATATTGAGCTAATGAAGAGCTCACTGTGACTAAGATTAGGTCAAAC--AATAGCAGAACATAAGCAGATTTTATCTGAATTCCATAATGAATATACGTGCTGCAATAACATTAAAAAAGCATGGCAGCCTATTCCAAACCAGCGACAATAGTTTTGTGCAAATAGTGGGTCTTTGTGTGTTTGACCTCCCACCACATAAGGGCAAACTCGATACGCATGCTAATGACCTACAATTATGAAATTAAAAAAG-AAAAATGCTACA-GGATGCCAGAGTGAACATCAGTGAAAGCCTCA--GAGACCCACTCTCCTTTAACTTTTTACAAATAAACTTAAATTGTAAATTAGAAACACAAATAATCATGAGTGGCTCTAACATTCAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      408218 416 -   9617498 TACAAAGTAATAAACAGTGCACACTTGGGGGCAAA--ACATATTGAGCTAATGAAGAGCTCACTGTGACTAAGATTAGGTCAAAC--AATAGCAGAACATAAGCAGATTTTATCTGAATTCCATAATGAATATACGTGCTGCAATAACATTAAAAAAGCATGGCAGCCTATTCCAAACCAGCGACAATAGTTTTGTGCAAATAGTGGGTCTTTGTGTGTTTGACCTCCCACCACATAAGGGCAAACTCAATACGCATGCTAATGACCTACAATTATGAAATTAAAAAAG-AAAAATGCTACA-GGATGCCAGAGTGAACATCAGTGAAAGCCTCA--GAGACCCACTCTCCTTTAACTTTTTACAAATAAACTTAAATTGTAAATTAGAAACACAAATAATCATGAGTGGCTCTAACATTCAAA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4960840 420 +  14009840 TACAGAGTAATAAACAGTGCACACTTGAGGGCAAACCACATATTGAGCTAATGAGGAACTCACTGTGATTAAGATTAGATCACACATAATAGCAGGACCTAAGCAGATTTTATCTGAATTCCATAATGAATATACATGCTGCAATAACATTTAAAAAGCATGGCAGCCTATTCCAAACCAGCAAGAATAGTTTTGTGCAAATAGTGGGTCTTTGTGTGTTTAACCTCCCACCATATAAGGGCAAACTCGATATGCATGCTAATGACCTACAATTATGAAATTAAAAAAG-AAAAATGCTAAA-GGATGCCAGAGTGAACATCAGTGAAAGCCATA--AAGACCCACTCTCCTTTAACTTTTTACAAATAAACTTAAATTATAAATTAGAAACACAAATAACCATGAGTGGCTCTAACATTCCAA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7575006 411 +  58131712 TACAAAGTAAGAAACAGTCCGCACTTGAGGGCAAACCACATATTGAGCTAATGAAGAGCTCACTGTGATTAGGATTCGATCAAACATAATAGCAGAACATAAGCAGATTTTATCTGAATTCTGTAAAGAATATACATGCTGCAATAACATTTAAAAAGCATGGCAGCCTATTGCAAACCAGCAAGAATAGTTTTGTGCAAATAGAAGGTCTGTGTGTGTTTGAACTCCCACCACATAAGGGCAAACTCGATACGCATGCTAATAACCTACAATTATCAGATAAAAAAAACAAAAATGCTAAA-GGATGCCAGAGTGAACATCAGGGAAAG--------AG---CCCTCTCCCTTAACTTTTTATAAATAAATTTAAACTCTAAATT-GAAACACAAATAAACATGAGGGGCTCTAACATTCAAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      114349 419 +   7069685 TACAGAGTAATAAATAGTGCACACTTGAGGGCAAACCACATATTGATCTAATGAAGAACTCACTGTGATTAAGATTAGATCACACATAATAGCAGGACCTAAGCAGATTTTATCTGAATTCCAT-ATGAATATACATGCTGCAATAACATTTAAAAAGCATGGCAGCCTATTCCAAACCAGCAAGAATAGTTTTGTGCAAATAGTGGGTCTTTGTGTGTTTAACCTCCCACCATATAAGGGCAAACTCGATATGCATGCTAATGACCTACAATTATGAAATTAAAAAAG-AAAAATGCTAAA-GGATGCCAGAGTGAACATCAGTGAAAGCCATA--AAGACCCACTCTCCTTTAACTTTTTACAAATAAACTTAAATTATAAATTAGAAACACAAATAATCATGAGTGGCTCTAACATTCCAA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3034586 405 +   3749464 TACAAAGTAATCAACAGTGCACACTTGAGGGCAAACCGCATATTGAGCTAATGAAGAGCTCACTGTGATTAAGATTGGATCAAAC--AGTAGCAGAACACAAGCAAATTTTATCTGAATTCTGTAACGAATATACATGCTGCAATAACATTAGAAAAGCAAGGCAGCCTATTCCAAACCAACAAGAATAGTTTTGTGCAAACAGTGGGTCTTTGTGTGTTTGAACTCCCACCACGTAACGGCAAACTCAATATACATGCTAATGACCTACAATTATGAAATTAAAATAG-AAA------------ATGGCAGAGTGAACCTCAGTGAAAGCCACA--GAGACCCAATCTCTTTTAATTTTTAACAAATAAACTTAAACTACAAATTAGAA--ACAAATAATCAAGAGTAGCTCTAACATTCAAA
i colAng1.NW_012115677v1    I 2 C 0
s calJac3.chr10             72451917 406 - 132174527 TACCAAGTAACAAAC--TGCACACTTGAGGGCAGACCACATACTGAGCTGACCAAGAGCTCACTGTGATTAGGATGTGATCAACTATGATAGCAGAACAT----AAATTGTATCTGAATTCCGTAATAAGTATACATGCCGCAATAACATTGAAAAAGCATGGCATCCTACTCCAAACCAGCAAAAAGAGTTTGGTGCAAAGGGTGGGTCTTTGTGTGTTTGAACTCCCACCACATAAGGCCAAACTCGATATGCCTGCTATTGACCTACAATTACCGAAACA-----G-AAAAATGCTAAA-GAATGCCAGAGTGCGTATCAGAGAAAGCCACACAAAGACCAACTCTACTTTAACTTTTTACAAATAAGT-----TTATAAATTAGAAACACAAATAATCATGAGTGGCTCTAACGGCCAAA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1007274 415 -   1842816 TACAAGGTAATAAACGGTGTGCACGTGCGGGCAAAGCACATATTGAGCTAATTAAGAGCTCACTGTGAGCAGGATTCCATCAAATATCATAGCAGAACATAAGCAAATTGTATCGGAATTCCATAAAGAATATACATGCTGCAATAACATT-AAAAACCATGGCAGCCTATTCCAAACTAGCGAGAATGGTTTTGTGCCAATAGTGGGTCTTTGTGTGTTTGAACTCCCACCACATAAGGGCAAACTCGATAGGCATGCTAATGACCTACGATTATCAAATTAAAAATG-AAAAACGCTAAA-GGATGCCAGAGTGAACATCAGTGAAAGCCACACGAAGACCCACTCTCCTTTAACTTTTTACAAATAAA------CTGTAAATTAGAAACACAAATCATCATGAGTGACTCTAACATTCAAA
i cebCap1.NW_016107745v1    C 0 I 253
e canFam3.chr9               5823122   2 -  61074082 I
e aotNan1.NW_018502759v1     9385436  59 +  14477005 I
e otoGar3.GL873533          30947835  47 +  31380117 I
e panPan2.chr15             71432514   0 -  99763055 C

a score=228522.000000
s hg38.chr15_KI270851v1_alt   251786 65 +    263054 GGAAGTAAATGAATTGTGTAGGAGATTAACCCCATAACTTGGTTTCTTATTTAAAAATTTCTTGA
s gorGor5.CYUI01000141v1       11565 65 -    281578 GGAAGTAAATGAATTGTGTAGGAGATTAACCCCATAACTTGGTTTCCTATTTAAAAATTTCTTGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493176 65 - 121039945 TGAACTAAATGAATTGTGTTGGAGATTAACTCCATAACTTGGTTTCTTATTTAAAAATATCTTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428104 65 + 169600520 TGAACTAAATGAATTGTGTAGGAGATTAACCCCATAACTTTGTTTCTTTTTAAAAAGTTTCTTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91227370 65 - 171882078 TGAAGTAAATGAATTGGGTAGGAGATTAACCCCATAACTTTGTTTCCTTTTTAAAAATTTCTTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      408634 65 -   9617498 TGAAGTAAATGAATTGGGTAGGAGATTAACCCCATAACTTTGTTTCCTTTTTTAAAATTTCTTGA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4961260 64 +  14009840 TGAAGTAAATGAATTGGGTAGGAGATTAACCCCATAAC-TTGTTTCCTTTTGTAAAATTTCTTGA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7575417 64 +  58131712 TGAAATAAATGAATTGTGTAGGGGATTAACCACATTTT-TTTGTTGTTGATTTTCAATTTCTTGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      114768 64 +   7069685 TGAAGTAAATGAATTGGGTAGGAGATTAACCCCATAAC-TTGTTTCCTTTTGTAAAATTTCTTGA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3034991 65 +   3749464 TGAAGTAAATGGATTGTGTAGGAGATTAACCCCATAACTTTGTTTCTTTTTTAAAAATTTCTTGA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72452323 61 - 132174527 TAAAGTTAATGAATTGTGT---AGATTAACCCCATAACTTTGTTT-TGGTTTTTAAATTTCTTGA
i calJac3.chr10             C 0 I 252
e canFam3.chr9               5823122  2 -  61074082 I
e aotNan1.NW_018502759v1     9385436 59 +  14477005 I
e otoGar3.GL873533          30947835 47 +  31380117 I
e cebCap1.NW_016107745v1     1007689 253 -   1842816 I
e panPan2.chr15             71432514  0 -  99763055 C

a score=11955.000000
s hg38.chr15_KI270851v1_alt   251851 3 +    263054 GCA
s gorGor5.CYUI01000141v1       11630 3 -    281578 GCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493241 3 - 121039945 CCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428169 3 + 169600520 CCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91227435 3 - 171882078 CCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      408699 3 -   9617498 CCA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4961324 3 +  14009840 CCA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7575481 3 +  58131712 CCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      114832 3 +   7069685 CCA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3035056 3 +   3749464 CCA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72452636 3 - 132174527 CCA
i calJac3.chr10             I 252 C 0
e canFam3.chr9               5823122 2 -  61074082 I
e aotNan1.NW_018502759v1     9385436 59 +  14477005 I
e otoGar3.GL873533          30947835 47 +  31380117 I
e cebCap1.NW_016107745v1     1007689 253 -   1842816 I
e panPan2.chr15             71432514 0 -  99763055 C

a score=169660.000000
s hg38.chr15_KI270851v1_alt   251854 45 +    263054 GCTGTTTGATGATGGTGATGTTTATCTCCTTCTTCTTGGCAGCCA
s gorGor5.CYUI01000141v1       11633 45 -    281578 GCTTTTTGATGATGGTGATGTTTATCTCCTTCTTCTTGGCAGCCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493244 45 - 121039945 GCTCTTTGATGATGATGATGTTTATCTCCTTCTTCTCGGCTGCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428172 45 + 169600520 GCTCTTTGATGACGGTGATGTTTATCTCCTTCTTCTTGGCAGCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91227438 45 - 171882078 GCTCTTTGATGATGGTGATGTTAATCTCCTTCTTCTCGGCAGCGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      408702 45 -   9617498 GCTCTTTGATGATGGTGATGTTAATCTCCTTCTTCTCGGCAGCGA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4961327 42 +  14009840 GTTCATTGATGATGGTGATGTTTATCTC---CTTCTCGGCAGCCA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7575484 41 +  58131712 GCTCTCAGATGATGATGATGTTGATCTC---CCTGTTCTCCGCT-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      114835 42 +   7069685 GCTCTTTGATGATGGTGATGTTTATCTC---CTTCTCGGCAGCCA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3035059 42 +   3749464 GCTCTTTGATGATGGTGATGTTTATCTC---CTTCTCGGCAGCCA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72452639 41 - 132174527 GCTCTTAGACAATGGTGATGCTGATCTCCCCGTTCTTGGCA----
i calJac3.chr10             C 0 C 0
s canFam3.chr9               5823124 44 -  61074082 GCTCTTAGATCACCAGGATCTTCACCTCGTCATTGTCATCAGCC-
i canFam3.chr9              I 2 C 0
s dasNov3.JH564958            400882 44 -    584178 GCTTTTAGATGATGATAATCTTCACTTGTTCGTTCTCATCAGCC-
i dasNov3.JH564958          N 0 C 0
e aotNan1.NW_018502759v1     9385436 59 +  14477005 I
e otoGar3.GL873533          30947835 47 +  31380117 I
e cebCap1.NW_016107745v1     1007689 253 -   1842816 I
e panPan2.chr15             71432514  0 -  99763055 C

a score=151581.000000
s hg38.chr15_KI270851v1_alt   251899 27 +    263054 AGCCCAGCAAAAGAATGGCACACAGCA
s gorGor5.CYUI01000141v1       11678 27 -    281578 AGCCCAGCAAAAGAACGGCACACAGCA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493289 27 - 121039945 AGCCCAGCCAAAGAATGGAACACAGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428217 27 + 169600520 AGCCCAGCAAAAGAACGGCACGCAGCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91227483 27 - 171882078 AGCCCGGCAAAAGAATGGCACACAGGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      408747 27 -   9617498 AGCCCGGCAAAAGAATGGCACACAGGG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4961369 27 +  14009840 AGCCCGGCAAAAGAATGGCACACAGGG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7575525 26 +  58131712 -GCCCGGTAAAAGAATGGGACGCAGGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      114877 27 +   7069685 AGCCCGGCAAAAGAATGGCACACAGGG
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3035101 27 +   3749464 AGCCCAGCAAAAGAATGGCACACAGCA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72452680 26 - 132174527 -GCCTGGTAAAAGAATGGCACGCAGGA
i calJac3.chr10             C 0 C 0
s otoGar3.GL873533          30947882 27 +  31380117 AGCCCGGTAGAATAAGGGGAGGCAGGT
i otoGar3.GL873533          I 47 C 0
s canFam3.chr9               5823168 23 -  61074082 ----CGGTAGAAGAAGGGGACGCAGGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            400926 23 -    584178 ----CGGTAAAAGAATGGGATGCAGGG
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9385436 59 +  14477005 I
e cebCap1.NW_016107745v1     1007689 253 -   1842816 I
e panPan2.chr15             71432514  0 -  99763055 C

a score=184384.000000
s hg38.chr15_KI270851v1_alt   251926 24 +    263054 GTTGCTGCCCAAGCCTGGGTG------------------CTC
s gorGor5.CYUI01000141v1       11705 24 -    281578 GTTGCTGCCCAAGCCTGGGTG------------------CTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493316 24 - 121039945 GTTGCTGCCCAAGCCTGGGTG------------------CTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428244 24 + 169600520 GTTGCTGCCCAAGCCTGggtg------------------ctc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91227510 24 - 171882078 GTTGATGCCCAAGCCTGGGTG------------------CTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      408774 24 -   9617498 GTTGATGCCCAAGCCTGGGTG------------------CTC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4961396 24 +  14009840 GTCGATGTCCAAGCCTGGGTG------------------CTC
i cerAty1.NW_012001627v1    C 0 I 9
s chlSab2.chr26              7575551 24 +  58131712 TTTGCTGGCCAAGCCTGGGTG------------------CTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      114904 24 +   7069685 GTTGATGCCCAAGCCTGGGTG------------------CTC
i manLeu1.NW_012109919v1    C 0 I 9
s colAng1.NW_012115677v1     3035128 24 +   3749464 GTTGCTGCCCAAGCCTGGGTG------------------CTC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72452706 24 - 132174527 GTTGCTGCCCAAGCCTGGGTG------------------CTC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9385495 24 +  14477005 GTTGCTGCCCAAGCCTGGGCG------------------CTC
i aotNan1.NW_018502759v1    I 59 C 0
s otoGar3.GL873533          30947909 24 +  31380117 GTTGCTGCCCAAGCCTGGGCG------------------CTC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5823191 42 -  61074082 ATTCTTGCTTAAACCTAGGTATGGCTGGGGATTCTGCATCTC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            400949 24 -    584178 GCTGTTGCCCAGGCCTGGGTG------------------ATT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1007689 253 -   1842816 I
e panPan2.chr15             71432514  0 -  99763055 C

a score=7800.000000
s hg38.chr15_KI270851v1_alt   251950 1 +    263054 C
s gorGor5.CYUI01000141v1       11729 1 -    281578 C
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493340 1 - 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428268 1 + 169600520 c
i rheMac8.chr7              C 0 I 9
s macFas5.chr7              91227534 1 - 171882078 C
i macFas5.chr7              C 0 I 8
s macNem1.NW_012017799v1      408798 1 -   9617498 C
i macNem1.NW_012017799v1    C 0 T 65734
s chlSab2.chr26              7575575 1 +  58131712 C
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3035152 1 +   3749464 C
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72452730 1 - 132174527 C
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9385519 1 +  14477005 C
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30947933 1 +  31380117 C
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5823233 1 -  61074082 C
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            400973 1 -    584178 C
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1007689 253 -   1842816 I
e panPan2.chr15             71432514 0 -  99763055 C
e manLeu1.NW_012109919v1      114928 9 +   7069685 I
e cerAty1.NW_012001627v1     4961420 9 +  14009840 I

a score=23440.000000
s hg38.chr15_KI270851v1_alt   251951 13 +    263054 TGGTGGTCCTGCA------------------
s gorGor5.CYUI01000141v1       11730 13 -    281578 TGGTGGTCCTGCA------------------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493341 13 - 121039945 TGGTGGTCCTGCA------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428278 13 + 169600520 tggtgctcctgCG------------------
i rheMac8.chr7              I 9 C 0
s macNem1.NW_012017799v1      343065 13 -   9617498 TGGTGGTCCTGCA------------------
i macNem1.NW_012017799v1    T 65734 C 0
s chlSab2.chr26              7575576 13 +  58131712 TGGGTGTCCTGCA------------------
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3035153 13 +   3749464 TGGTGCTCCTGCG------------------
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72452731 13 - 132174527 AGGAAGGTCTTCC------------------
i calJac3.chr10             C 0 I 6
s aotNan1.NW_018502759v1     9385520 13 +  14477005 CGGGGGTTCTGCA------------------
i aotNan1.NW_018502759v1    C 0 I 91
s otoGar3.GL873533          30947934 13 +  31380117 TGCGGGTTCTGGA------------------
i otoGar3.GL873533          C 0 I 18
s canFam3.chr9               5823234 13 -  61074082 TGCAGAAGCTGCA------------------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            400974 31 -    584178 TGGGGGTTTTGAATCTCACGTAGCAGTTGCA
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1007689 253 -   1842816 I
e panPan2.chr15             71432514  0 -  99763055 C
e manLeu1.NW_012109919v1      114928  9 +   7069685 I
e cerAty1.NW_012001627v1     4961420  9 +  14009840 I
e macFas5.chr7              91227535  8 - 171882078 I

a score=82410.000000
s hg38.chr15_KI270851v1_alt   251964 42 +    263054 CGATCGG------------------CTG------------TGCAGTAGGCTTGTCA------AGGAGA--GGATCCTCCC
s gorGor5.CYUI01000141v1       11743 42 -    281578 CGATCGG------------------CTG------------TGCAGTAGGCTTGTCA------AGGAGA--GGATCCTCCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493354 42 - 121039945 CGATTGG------------------CTG------------TGCAGTAGGGTTGTCA------CAGGGA--GGACCCTCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428291 42 + 169600520 CGATGGG------------------CTG------------TGCAGTGGGGTTGTCG------TGGGGA--GACCCCTCCC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012017799v1      343078 42 -   9617498 TGATGGG------------------CTG------------TGCAGTAGGGTTGTCC------TGGGGA--GACCCCTTCC
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7575589 60 +  58131712 TTACGGGAAGCAGCTGCATGATCTTCTG------------TGCGGTGGGGTTGCCA------TTGGGA--GAACCCTCCC
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3035166 42 +   3749464 CGATGGG------------------CTG------------TGCAGTAGGGTTGTCC------TGGGGA--GACCCCTCCC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72452750 54 - 132174527 AAACCGG------------------CTGCTCGATGTTTCCTACAGTGGGGTTGCCC------TGGGGA--GAACCCTCCC
i calJac3.chr10             I 6 C 0
s otoGar3.GL873533          30947965 42 +  31380117 TGATCTG------------------CTG------------AGTAGTGGGGTCCTCA------GGCGGA--GACACCTCCC
i otoGar3.GL873533          I 18 C 0
s canFam3.chr9               5823247 44 -  61074082 TGATTTG------------------CTG------------TGCAGTGGGGTTCTCA------GGGGCACTGTGGCCTGGT
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958            401005 45 -    584178 TAATTTG------------------CTG------------GGCAGTGGGATTCTCAGCTCCTTTTACA--GGTTCCC---
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9385533 91 +  14477005 I
e cebCap1.NW_016107745v1     1007689 253 -   1842816 I
e panPan2.chr15             71432514  0 -  99763055 C
e manLeu1.NW_012109919v1      114928  9 +   7069685 I
e cerAty1.NW_012001627v1     4961420  9 +  14009840 I
e macFas5.chr7              91227535  8 - 171882078 I

a score=54770.000000
s hg38.chr15_KI270851v1_alt   252006 22 +    263054 TGGCCTCTCCTTGGGCAGAGGA
s panTro5.chr15             72195715 22 -  83230942 TGGCCTCTCCTTGGGCAGAGGA
i panTro5.chr15             N 0 C 0
s panPan2.chr15             71432514 22 -  99763055 TGGCCTCTCCTTGGGCAGAGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       11785 22 -    281578 TGGCCTCTCCTTGGGCAGAGGA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493396 22 - 121039945 TGGCCTCTCCTTGCGCAGAGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428333 22 + 169600520 TGGCCTCTCCTTGCCCAGTCTC
i rheMac8.chr7              C 0 I 9
s macNem1.NW_012017799v1      343120 18 -   9617498 TGGCCTCTCCTTGCGCAG----
i macNem1.NW_012017799v1    C 0 I 65669
s chlSab2.chr26              7575649 22 +  58131712 TGGCCTCTCCCGGTGCAGGCTC
i chlSab2.chr26             C 0 I 9
s colAng1.NW_012115677v1     3035208 22 +   3749464 TGGCCTCTCCTTGCGCAGGCTG
i colAng1.NW_012115677v1    C 0 I 9
s calJac3.chr10             72452804 15 - 132174527 TGGCATCTCTT---GCAG----
i calJac3.chr10             C 0 I 7
s otoGar3.GL873533          30948007 22 +  31380117 TGGCCTCTCCTCGTGCAGGTTC
i otoGar3.GL873533          C 0 I 9
s canFam3.chr9               5823292 17 -  61074082 GGGCCTCTCCCTGAGGA-----
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958            401050 11 -    584178 CATCATCTGCC-----------
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9385533 91 +  14477005 I
e cebCap1.NW_016107745v1     1007689 253 -   1842816 I
e manLeu1.NW_012109919v1      114928  9 +   7069685 I
e cerAty1.NW_012001627v1     4961420  9 +  14009840 I
e macFas5.chr7              91227535  8 - 171882078 I

a score=15349.000000
s hg38.chr15_KI270851v1_alt   252028 3 +    263054 GGT
s panTro5.chr15             72195737 3 -  83230942 GGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71432536 3 -  99763055 GGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       11807 3 -    281578 GGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493418 3 - 121039945 GCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428364 3 + 169600520 GCT
i rheMac8.chr7              I 9 C 0
s macFas5.chr7              91227543 3 - 171882078 GGT
i macFas5.chr7              I 8 C 0
s macNem1.NW_012017799v1      408807 3 -   9617498 GGT
i macNem1.NW_012017799v1    I 65669 C 0
s cerAty1.NW_012001627v1     4961429 3 +  14009840 GTT
i cerAty1.NW_012001627v1    I 9 C 0
s chlSab2.chr26              7575680 3 +  58131712 GGC
i chlSab2.chr26             I 9 C 0
s manLeu1.NW_012109919v1      114937 3 +   7069685 GGT
i manLeu1.NW_012109919v1    I 9 C 0
s colAng1.NW_012115677v1     3035239 3 +   3749464 GGT
i colAng1.NW_012115677v1    I 9 C 0
s calJac3.chr10             72452826 3 - 132174527 GCT
i calJac3.chr10             I 7 I 6
s otoGar3.GL873533          30948038 3 +  31380117 ACT
i otoGar3.GL873533          I 9 C 0
s canFam3.chr9               5823309 3 -  61074082 GGT
i canFam3.chr9              C 0 I 7
e dasNov3.JH564958            401061 0 -    584178 C
e aotNan1.NW_018502759v1     9385533 91 +  14477005 I
e cebCap1.NW_016107745v1     1007689 253 -   1842816 I

a score=15918.000000
s hg38.chr15_KI270851v1_alt   252031 2 +    263054 GA
s panTro5.chr15             72195740 2 -  83230942 GA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71432539 2 -  99763055 GA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       11810 2 -    281578 GA
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493421 2 - 121039945 GA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428367 2 + 169600520 GA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91227546 2 - 171882078 GA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      408810 2 -   9617498 GA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4961432 2 +  14009840 GA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7575683 2 +  58131712 CA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      114940 2 +   7069685 GA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3035242 2 +   3749464 GA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72452835 2 - 132174527 AA
i calJac3.chr10             I 6 C 0
s aotNan1.NW_018502759v1     9385624 2 +  14477005 GA
i aotNan1.NW_018502759v1    I 91 C 0
s otoGar3.GL873533          30948041 2 +  31380117 GA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5823319 2 -  61074082 TA
i canFam3.chr9              I 7 I 13
s dasNov3.JH564958            401061 1 -    584178 -A
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1007689 253 -   1842816 I

a score=1642401.000000
s hg38.chr15_KI270851v1_alt   252033 171 +    263054 GGCTCACCTCACAAAGATCTTTG-----------GAGAGAGGGAGGCAGGGATCTGAGCACA-----GTGGGAGCC-CCC--TCTTCCTGCCTGCCCACCCCACCT------GAGGGCTC-TACTCACCACCATGCTTGTCTGCAGCCCCAAGCTCCT-GGGGGGCTGGGGCTCCTGGACCGGGCTCATCAGCAGGGT
s panTro5.chr15             72195742 172 -  83230942 GGCTCACCTCACAAAGATCTTTG-----------GAGAGAGGGAGGCGGGGATCTGAGCACA-----GTGGGAGCC-CCCC-TCTTCCTGCCTGCCCACCCCGCCT------GAGGGCTC-CACTCACCACCATGCTTGTCTGCAGCCCCAAGCTCCT-GGGGGGCTGGGGCTCCTGGACCGGGCTCATCAGCAGGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71432541 172 -  99763055 GGCTCACCTCACAAAGATCTTTG-----------GAGAGAGGGAGGCGGGGATCTGAGCACA-----GTGGGAGCC-CCCC-TCTTCCTGCCTGCCCACCCCGCCT------GAGGGCTC-CACTCACCACCATGCTTGTCTGCAGCCCCAAGCTCCT-GGGGGGCTGGGGCTCCTGGACCGGGCTCATCAGCAGGGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       11812 172 -    281578 GGCTCACCTCACAAAGATCTTTG-----------GAGAGAGGGAGGCAGGGATCTCAGCACA-----GTGGGAGCC-CCCC-TCTTCCTGCCTGCCCACCCCACCT------GAGGGCTC-TACTCACCACCATGCTTGTCTGCAGCCCCAAGCTCCT-GGGGGGCTGGGGCTCCTGGACCGGGCTCATCAGCAGGGT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493423 172 - 121039945 GGTTCACCTCACAAAGATCTTTG-----------GAGAGAGGGAGGCAGGGATCTGAGCACA-----GTGGGAGCC-CCCC-TCTTCCTGCCTGCCCACCCCGCCT------GAGGGCTC-TACTCACCACCATGCTTGTCCGCAGCCCCAAGCTCCT-GGGGGGCTGGGGCTCCTGGACCGGGCTCATCAGCAGGGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428369 173 + 169600520 GGCTCAGCTCACAAAGATCTTTG-----------GAGAGAGGGAGGCGGGGATCTGAGTGCA-----GCGCCAGCACCCCC-TGCCCCTGCCTGCCCGCCCCGCCT------GAGGGCTC-TATTCACCGCCATGCTTGTGGGCAGCCCCAAGCTCCT-GGGGGGCTGGGGCTCTTGGACGGGGCTCATGAGCAGGGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91227548 171 - 171882078 GGCTCACCTCACAAAGATCTTTG-----------GGGAGAGGGAGGCGGGGATCTGAGCGCA-----GTGTGAGCCTCTCC-TGCCCCTGCCTGCCCA-CCTGCCT------GAGGACTC-TACTCACCACCATGCTTGTTGGCAGCTCCCAGCTCCT-GCGGGGCT-GGGTTCCTGGACTGGGCTCATCAGCAGGGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      408812 171 -   9617498 GGCTCACCTCACAAAGATCTTTG-----------GGGAGAGGGAGGCGGGGATCTGAGCGCA-----GTGTGAGCCTCTCC-TGCCCCTGCCTGCCCA-CCTGCCT------GAGGACTC-TACTCACCACCATGCTTGTTGGCAGCTCCCAGCTCCT-GCGGGGCT-GGGTTCCTGGACTGGGCTCATCAGCAGGGT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4961434 172 +  14009840 GGCTCCCCTCACAAAGATCTTTG-----------GGGAGAGGGAGGCGGGGATCTGAGCGCA-----GTGCGAGCCTCTCC-TGCCCCTGCCTGCCCA-CCCGCCT------GAGGACTC-TACTCACCACCATGCTTGTTGGCAGCCCCCAGATCCTGGGGGGGCT-GGGTTCCTGGACTGGGTTCATCAGCAGGGT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7575685 173 +  58131712 GGCTCACCTCACAAAGCTCTTCA-----------GAGAGAAGGAGGCGGGGGTCTGAGCACA-----GTGCGAGCCTCCCC-TGCCCCTGCCTGCCCACCCCGCCT------GAGGGCTC-TACTCACCACCCTGCTCCTCTGCAGCCCCAAGCTCTT-GGGGGGCTGGGGCCCCTGGAGCGGGCTCATCACCAGGGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      114942 172 +   7069685 GGCTCACCTCACAAAGATCTTTG-----------GGGAGAGGGAGGCGGGGATCTGAGCCCA-----GTGCGAGCCTCTCC-TGCCCCTGCCTGCCCA-CCCGCCT------GAGGACTT-TACTCACCACCATGCTTGTTGGCAGCCCCCAGCTCCT-GGAGGGGCTGGGTTCCTGGACTGGGTTCATCAGCAGGGT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3035244 173 +   3749464 GACTCACTTCACAAAGATCTTTG-----------GAGAGAGGGAGGCAGGGATCTGAGTGCA-----GTGCCAGCACCCCC-TGCTCCTGCCTGCCCGCCCCACCT------GAGGGCTC-TACTCACCACCATGCTGGTCGGCAGCCACAAGCTCCT-GGGGGTCTGGGGCTCCTGGACCAGGCTCATTAGCAGGGT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72452837 173 - 132174527 GGCTCACCTCATAAAGATCTTTG-----------GAGAGAGGGAGGTGGGGATCTCAGTTCA-----GGGTGAGTCTCCCC-TGCTTCTGCCTGCCCTCCCTGCCT------GAGGGCTC-CACTCACCGCCCTGCTTGTTGACAGTCTCAAGCTCCT-GGGGGGCTGGGGCCCCTGGAGCGGGCTCGTCAACGTGGT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1007942 170 -   1842816 GGCTCATCTCATAAAATTCTTTG-----------GAGAGAGGGAGGTGGGGATCTGAGTACA-----GTGCCAGCCTCCCC-TGCTCCTGCATGCCCACCCCGCCT------GAGGGCTC-TACTCACCATC---CTTGTCAGCAGCACCAAGCTCCT-GGGGGGCTGGGGCCCCTGGAGTGGACTCATTAGCAGGGT
i cebCap1.NW_016107745v1    I 253 I 40
s aotNan1.NW_018502759v1     9385626 175 +  14477005 GGCTCACCTCACAAAGATCTTTG-----------GAGAGAGAGAGGCAGGGCTCTGAGCACC-----ATGTGAGCCCCCCCTTGCTCCTGCCTGCCCACACCTCCC------GAGGGCTCTTACTCACCACCCTGCTGGTTGGCAGCCCCAAGCTCCT-GGGGGGCTGGGGCCTCTGGACTGGGCTCAGCTGCAGGGT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30948043 169 +  31380117 GGCTCACCTCATAAAAATCTTTT-----------G-GAGAGAGGAGCAGGGCTCTGAGCCAC-----TTGTAGCCTTCCCC-TGCTCCTGC---CCCACCCTGCCC------AAGGGCTC-TACTCACCACCCTGCTTGTTGGTAGCTCCAAGCTCCT-GGGGGGCTGTGGGCTTTGGGGTAGGCTCCTCAGCAGGGC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5823334 172 -  61074082 GGCTCACCTCTCGAAGATCTTTGTGGGTCAGGGAGAGAGAAAGAAACAGGGCTCTGAGTGCT-----GTGCGAGCTCTCCC-CGC---------CCCACCCACCCT------GAGGGCTC-TACTCACCACCCTGGCCATTGGCAGCACCAAGCTCTT----GGGCTGGGGGTGCTGTAGCAGGCTCTGCTGCGGGGT
i canFam3.chr9              I 13 C 0
s dasNov3.JH564958            401062 177 -    584178 AATTCACCTCGTGAAGGTCTGAG-----------GAGAGAGAAAGGCAGGGCTCTGAGCACCCTTCTGTGC---TCTCCCC-TGCTTCTACCTGCCTT-TCCACCTTTCTGAGAGGGCTC-TACTCAC---CCTGGCCATTGCCAGCTCCAAGCTCCT-GAGGGGCTGGGGGTGTAGTTGTGGCCCCACCAGCAGGGC
i dasNov3.JH564958          C 0 C 0

a score=391159.000000
s hg38.chr15_KI270851v1_alt   252204 66 +    263054 TGTGGGCAGCGGCCAGGAATTTTCTGTGCCCATTGTT---GTAGTTGC-T-GTAAGCCGCAATACCATCTG
s panTro5.chr15             72195914 66 -  83230942 TCTGGGCAGTGGCCAGGAATTTTCTGTGCCCATTTTT---GTAGTTGC-T-ATAAGCCGCAACACCATCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71432713 66 -  99763055 TCTGGGCAGTGGCCAGGAATTTTCTGTGCCCATTTTT---GTAGTTGC-T-ATAAGCCGCAACACCATCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       11984 66 -    281578 TCTGGGCAGCGGCCAGGAATTTTCTGTGCCCATTGTT---GTAGTTGC-T-GGAAGCCGCAATACCATCTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493595 66 - 121039945 TCTGGGCAGCAGCCAGGAATTTTCTGTGCCCATTGTT---GTCGTCGC-C-ACAGGCCCCGATACCATCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428542 66 + 169600520 TCTGGGCAGAGATCAGGAGTTTGCTGTGCTTGTTGTT---GTAGTCGC-T-GCCAACCATAACAGCATCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91227719 66 - 171882078 TCTGGGCAGTGGCCGGAAATTTGCCATGCCCCTCGTT---GTAGTCAC-C-ACAAGCCACAGCATTATCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      408983 66 -   9617498 TCTGGGCAGTGGCCGGAAATTTGCCGTGCCCCTCGTT---GTAGTCAC-C-ACAAGCCACAGCATTATCTC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4961606 66 +  14009840 TCTGGCCAGTGGCCGGGAATTTGCCGTGCCCCTCGTT---GTAGTCCC-C-ACAAGCCACATCATTATCTC
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7575858 64 +  58131712 TCTGGGTAGTGGGGAGGAATTTGTCATGCCCCTCGTG---GTCG--CC-C-ACGAGTGGCAACACCAGCTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      115114 66 +   7069685 TCTGGGCAGTGGCCGGGAATTTGCCATGCCCCTCGCT---GCAGTCCC-C-ACAAGCCACATCATTATCTC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3035417 63 +   3749464 TCTGGGCAGCGGCCAGGAATCTGCTGTGT---TTGTT---GTACTCCC-T-ACAAGCCGTAACAGCATCTC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72453010 64 - 132174527 TCTTGGCCGTGGCCAGGAATTTGGCATGGCCCTCGTT---GTCAC--C-C-AGAATTGGAAACACCGGCTC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9385801 67 +  14477005 TCTGGGAAGCTGCCAGGAATCTGCTATGCCACTCATTTCGGTCGT--T-C-ACAAGCCGTAACACCAGCTC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30948212 67 +  31380117 TCTGGGTAGCTGCCAGGAATTTGCCATGCCACTCATT---GCGCTGGCTC-ACGAGTTGTACCACTAGCTC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5823506 67 -  61074082 CCTGGGCAGCTGCCAGGAGCTTGCCCTGCCGTTCATT---GCGCTCGCTC-ACTAGGCATAGCACCAGTTT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            401239 67 -    584178 TCTGGGCAGCTGCCAGAAATTTGCCATGCCATTCATT---GCGCTCGT-TGACAAGTCTTAATACCAGTTC
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1008112 40 -   1842816 I

a score=502465.000000
s hg38.chr15_KI270851v1_alt   252270 46 +    263054 CTGCAGCTCCAGCAGCTTCACCTGGAGGGAGGGGTGCTCAGCTGCC
s panTro5.chr15             72195980 46 -  83230942 CTGCAGCTCCAGCAGCTTCACCTGGAGGGAGGGTTGCTCAGCTGCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71432779 46 -  99763055 CTGCAGCTCCAGCAGCTTCACCTGGAGGGAGGGGTGCTCAGCTGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       12050 46 -    281578 CTGCATCTCCAGCAGCTTCACCTGGAGGGAGGGGTGCTCAGCTGCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493661 46 - 121039945 CTGCAGCTCCAGCAGCTTCACCTGGAGGGAGGGGTGCTCAGCTGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428608 46 + 169600520 CTGCAGCGCCAGCAGCTTCACCTGGAGGGAGGGGTGCTCAGCTGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91227785 46 - 171882078 CTGCAGCTCCAGCAGCTTCACCTGGATGGAGGGGTGCTCAGCTGTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      409049 46 -   9617498 CTGCAGCTCCAGCAGCTTCACCTGGATGGAGGGGTGCTCAGCTGTC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4961672 46 +  14009840 CTGCAGCTCCAGCAGCTTCACCTGGACAGAGGAGTGCTCAGCTGTC
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7575922 46 +  58131712 CTGCAGTTCCAACAGCTTCATCTGAAGGGAGGGGTGCTCAGCTGCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      115180 46 +   7069685 CTGCAGCTCCAGCAGCTTCACCTGGACAGAGGAGTGCTCAGCTGTC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3035480 46 +   3749464 CTGCAGCGCCAGCAGATTCACCTGGAGGGAGGGGTGCTCAGCTGTC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72453074 37 - 132174527 CTGCTGCTCCAG---------CTGGAGAGAGGGGTGCTCAACTGCC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1008152 46 -   1842816 CTGCAGCTCCAGCAGCTTCACCTGGAGATAGGGGTGCTCAGCTGCC
i cebCap1.NW_016107745v1    I 40 C 0
s aotNan1.NW_018502759v1     9385868 46 +  14477005 CTGCAGCTCCAGCAGCTTCACCTGGAGGGAGGGGTGTTCAGCTGCC
i aotNan1.NW_018502759v1    C 0 I 156
s otoGar3.GL873533          30948279 42 +  31380117 CTGCAGCTCCAGTAACTTCACCTGGAGTGAGAGGTATTCAGC----
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5823573 42 -  61074082 CTGTAGCTCCAGCAGCTTCATCTGGAAGGAGAGGTGCTGAGC----
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            401306 46 -    584178 CTGCAACTCCAGCAGTTTTACCTAGACAGAGATATGCTCAGAACCC
i dasNov3.JH564958          C 0 C 0

a score=435779.000000
s hg38.chr15_KI270851v1_alt   252316 83 +    263054 ATGCCGCTGCCTGCGcccaccctcacacccac----cccca---ccccca------------cccccacAGAGATGTT--GCACAAC--CTACCTTCATCTCCTCC
s panTro5.chr15             72196026 83 -  83230942 ATGCCGCTGCCTGCGcccaccctcacacccac----cccca---ccccca------------cccccacAGAGATGTT--GCACACC--CTACCTTCATCTCCTCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71432825 81 -  99763055 ATGCCGCTGCCTGCGCCCACCCTCACACCC-C----CCCCA----CCCCA------------CCCCCACAGAGATGTT--GCACACC--CTACCTTCATCTCCTCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       12096 86 -    281578 ATGCCGCTGCCTGCGTccaccctcacccccaccccacccca---ccccca-------------ccccACAGAGATGTT--GCACACC--CTACCTTCATCTCCTCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493707 95 - 121039945 ATGCCACTGCCTGCGcctaccctcacacccac----cctca---cacccacccccaccgacacccccacAGAGTTGTT--GCACACC--CTACCTTCATCTCCTCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428654 65 + 169600520 ACACCGCTGCCGG------------CGCCCAC----CCCCA---------------------CCCCTGCAGAGATGTT--GCACACC--CTACCTTCATCTCCTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91227831 77 - 171882078 ATGCAGCTACCAGCACCCACCCTCACGCCCAC----CCCCA---------------------CCCCATCAGATATGTT--GCACACC--CTACATTCATCTCCTCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      409095 77 -   9617498 ATGCAGCTACCAGCGCCCACCCTCACGCCCAC----CCCCA---------------------CCCCATCAGATATGTT--GCACACC--CTACATTCATCTCCTCC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4961718 77 +  14009840 ATGCAGCTAccagcgcccacgctcacgcccac----cacca---------------------ccccaTCAGAGATGTT--GCACACC--CTACTTTCATCTCCTCC
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7575968 78 +  58131712 ATGACTAAGCCGGCACCAGCGCCAACGCCCAC----C-CCA---------------------CCCCCACGGAGATGTT--GCATGCCCTCTACCTTCATCTCCTCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      115226 77 +   7069685 ATGCAGCTAccagcgcccaccctcacgcccac----cacca---------------------ccccaTCAGAGATGTT--GCACACC--CTACTTTCATCTCCTCC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3035526 77 +   3749464 ACGCTGCTGCCAGTGCCCAATCTCACGCCCAC----CCCCA---------------------CCCCCTCAGAGATGTT--GCACACC--CTACCTTCATCTCCACC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72453111 86 - 132174527 ATGCTGGTGCCAGCACCCATGCTCATGCCCAC----TCCCAACCCCCTCA------------CCCCCGCAGAGATGCT--GCTCGCC--TTCCCTTTATCTCCCGT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1008198 86 -   1842816 ACACCGGTGCCGGCACCCACGCTCACGCCCAC----CCCCTTCCCCCTCA------------CCCCTGCAGAGATGTT--GTACACC--TTACCTTCATCCCCTCC
i cebCap1.NW_016107745v1    C 0 I 439
s otoGar3.GL873533          30948321 62 +  31380117 --------ACATGTGCCTAGC----CACCCAC----CCTTG---------------------TCC--ATAAAGATACC---CAGGCT--CTACCTTCATTTCCTCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5823615 69 -  61074082 -----ACCCCCGAGTTCCACCCC--TGCCCTG----TACCA---------------------CTCC--CAGCGATGCT--CAGGGCCC-CTACCTTCATGTTTTCT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            401352 67 -    584178 ----------CTGCCCCTGCCCCTGCCCCTAC----CACTA---------------------CCCT--CAGAGATGTTTAGGGCCTC--CTACCTTCATTTCTTCC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9385914 156 +  14477005 I

a score=377551.000000
s hg38.chr15_KI270851v1_alt   252399 83 +    263054 CTGAGCT---CCAGCCT-----GATGGTGT------CCTCCTCCCAGTGCTGCATCTTTGGAACGGCCCCCTGGTTCTGATAAAAGGTGATGGGTTT
s panTro5.chr15             72196109 83 -  83230942 CTGAGCT---CCAGCCT-----GATGGTGT------CCTCCTCCCAGTGCCGCATCTTTGGCACGGCCCCCTGGTTCTGATAAAAGGTGATGGATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71432906 88 -  99763055 CTGAGCT---CCAGCCTGATGGGATGGTGT------CCTCCTCCCAGTGCCGCATCTTTGGCACGGCCCCCTGGTTCTGATAAAAGGTGATGGATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       12182 82 -    281578 CTGAGCT---CCAGCCT-----GATGGTGT------CCTCCTCCCAGTGCCGCATCTTTGGCACGGCCCCCTGGTTCTGATAAAA-GTGATGGATTT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493802 83 - 121039945 CTGTCCTGGGCCAGCCT-----GA---GGT------CCTCCTCCCAGTGCCGCATCTTTGGCATGGCCCCCTGGCTCTGTTAAAAGGTGATGGGTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428719 86 + 169600520 CTGTGCCGGACCAGCCT-----GATGATGT------CCTCCTCCCATTGCTGCATCCTCGGCACTGCCCCCTGCCTCTGTTAGAAGCTGATGAACAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91227908 79 - 171882078 TTGTCCTGGGCCAGCCT-----GATGG------------CCTCCTGGTGCTGCATCTTTGGCACTACCCCC-GGCTCTATTATAATGTGATGAACTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      409172 80 -   9617498 TTGTCCTGGGCCAGCCT-----GATGG------------CCTCCTGGTGCTGCATCTTTGGCACTACCCCCTGGCTCTATTATAATGTGATGAACTT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4961795 82 +  14009840 TTGTCCTGG----GCCT-----GATGATGT------CCTCCTCCCGGTGCCGCATCTTTGGCACTACCCCCTGGCTCTATTATAAGGTGATGAACTT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7576046 83 +  58131712 TCCTTCTGGGCCAGCCT-----GATGATAT---------CCTCCTGGTGCCGTGTGTTTGGCACTGCCCCATGGCTCTCATATATGGTGATGTACTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      115303 76 +   7069685 TTGTCCTGGACC------------TGATGG---------CCTCCCAGTGCCGCATCTTTGGCACTATCCCCTGGCTCTATTATAAGGTGATGAACTT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3035603 86 +   3749464 CTGTGCTGGACCAGCCT-----GATGATGT------CCTCCTCCCATTGCCGCATCTTTGGCACTGCCCCCTGCCTCTATTATAAGCTGAGGAACAT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72453197 68 - 132174527 ---------------------------TTT--TCCACCTCCTCCTGGTGCCGGGGTTTTGGGACTTCCCTCTGCTGCTCATATGATTTGATGTCCTT
i calJac3.chr10             C 0 C 0
s otoGar3.GL873533          30948383 92 +  31380117 TTTTCCTGCGCCATCCG-----GCTCACATACTCCTCATTCTCCTGCTGCCGCTTCTTCAGTGCTAGCCTCTGACACTGGTACAGTGTGACGTACTC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5823684 92 -  61074082 TTGTCTTGAGCCAGACG-----GCTAATGTACTCCTCCTTCTCCCGGTGCCGTTCCTTCAGCACTGCCCTCTGATTCTGGTACAGGGCGATGTATTC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            401419 92 -    584178 TTGTCCTGGGCCAAGCG-----GCTAATGTACTCCTCCTTCTCACGGTGACGCTCCTTCATCACTGCCCTCTGATTTTGGTATAAGGCAATGTATTC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9385914 156 +  14477005 I
e cebCap1.NW_016107745v1     1008284 439 -   1842816 I

a score=328604.000000
s hg38.chr15_KI270851v1_alt   252482 39 +    263054 TCCTGCGGGAGGACAG----------G-----GCTCAGACGCTGGGG---------CCCCTCC
s panTro5.chr15             72196192 39 -  83230942 TCCTGCGGGAGGACAG----------G-----GCTCAGATGCTGGGG---------CCCCTCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71432994 39 -  99763055 TCCTGCGGGAGGACAG----------G-----GCTCAGATGCTGGGG---------CCCCTCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       12264 39 -    281578 TCCTGCGGGAGGACAG----------G-----GCTCAGACGCTGGGG---------CCCCTTC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493885 39 - 121039945 TCCTGCGGGAGGACAG----------G-----GCTCAGACACTGGGG---------CCTCTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428805 39 + 169600520 TCCTGCGGGAGGACAG----------G-----GCTCAGACGCTGGGG---------CCCCTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91227987 39 - 171882078 TCCTTCGGGACAACAG----------G-----GCTCAGACGCTGAGG---------CCCCTCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      409252 39 -   9617498 TCCTTCAGGACAACAG----------G-----GCTCAGACGCTGAGG---------CCCCTCC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4961877 39 +  14009840 TCCTGTGGGAGGACAG----------G-----GCTCAGACGCTGAGA---------CCCCTCT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7576129 39 +  58131712 TCCTGCAAGAGGACAG----------G-----GCTCAGACACTGGGG---------CCCATCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      115379 39 +   7069685 TCCTGAGGGAGGACAG----------G-----GCTCAGACGCTGAGA---------CCCCTCT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3035689 39 +   3749464 TCCTGCAGGAGGACAG----------G-----GCTTAGACACTGGGG---------ACCCTCC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72453265 49 - 132174527 TCCTGCGAAAGGACAGAGCTCAGACAG-----GCTCAGACACTGGGG---------ACCCTCT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9386070 39 +  14477005 TCCTGCAGGAGAACAG----------G-----GCTCAGATGCTGGGT---------TCCCTCC
i aotNan1.NW_018502759v1    I 156 I 111
s otoGar3.GL873533          30948475 48 +  31380117 ACCTACAAAAGGACAG----------G-----CTTCAGACACTGGGGCTGCTCTGACCCCTCC
i otoGar3.GL873533          C 0 I 7
s canFam3.chr9               5823776 44 -  61074082 TCCTGTGGGTACACGG----------GCTGCCGCTCAGGCTCTTGGA---------CCCATCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            401511 39 -    584178 CCCTGGGGAGAGAGAG----------G-----ACTCAGATACCAGGG---------CTCCCCT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1008284 439 -   1842816 I

a score=630470.000000
s hg38.chr15_KI270851v1_alt   252521 106 +    263054 AACGGCCC-----T-------------------------GTAGCTCCCCCTGCCGT---GCCCTGG-CCTCC-CACTCACTGATGGCATCTCTCTCGCC--AGTGGTGGATGAAGCAGAGTTCTTTTTTCTTCACCAGCTCAC
s panTro5.chr15             72196231 106 -  83230942 GACGGTCC-----T-------------------------GCAGCTCCCCCTGCCAT---GCCCTGG-CCTCC-CACTCACTGATGGCAACTCTCTCGCC--AGTGGCGGATGAAGCAAAGTTCTTTTTTCTTCACCAGCTCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433033 106 -  99763055 GACGGTCC-----T-------------------------GCAGCTCCCTCTGCCAT---GCCCTGG-CCTCC-CACTCACTGATGGCAACTCTCTCGCC--AGTGGCGGATGAAGCAAAGTTCTTTTTTCTTCACCAGCTCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       12303 106 -    281578 GACGGCCC-----T-------------------------GCAGCTCCCCCTGCCGT---GCCCTGG-CCTCC-CACTCACTGATGGCATCTCTCTCGCC--AGCGGTGGATGAAGCAAAGTTCTTTTTTCTTCACCAGCTCAC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44493924 106 - 121039945 GATGGTCC-----T-------------------------GCAGCTCCCCCTGCCGT---GCCCTGG-CCTCC-CACTCACTGATGGCATCTCTCTCGCC--AGTACTGGATGAATCGTATTTCTTGTTTTTTCACCAGCTCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428844 106 + 169600520 GAAGgccc-----t-------------------------gcagctccccctgccct---gccctgg-cctcc-cACTCACTGATGGCATCTCTCTCCCC--AGTATTCGATGAACGGAAGTTCGGGTTTCTCCACCAGCTCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91228026 106 - 171882078 GTTGGCCC-----T-------------------------GCAGCTCCCACTGCCAT---GCCCTGG-CCTCC-AGCTCACTGATGGCATCTGTCTTTCC--AGTTCTGGATGAATCGAAGCTGTAGTTTCTCCACCCACTCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      409291 106 -   9617498 ATTGGCCC-----T-------------------------GCAGCTCCCACTGCCAT---GCCCTGG-CCTCC-AGCTCACTGATGGCATCTGTCTTTCC--AGTTCTGGATGAATCAAAGCTGTAGTTTCTCCACCCACTCCC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4961916 106 +  14009840 GATGGCCC-----T-------------------------GCAGCTCCCACTGCCAT---GCCCTGG-CCTCC-AGCTCACTGATGGCGTCTGTCTTTCC--AGTACTGGATGAATCAAAGTTCTAGTTTCTCCACCCACTCCC
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7576168 108 +  58131712 GATGGCCC-----C-------------------------GCAGCTCCCCATGCCGT---GCCCTGG-CTTTC-TGCTTACTCATGCCCTCTGTTGCTCCAGAGAGCTGGATGAATCCAAGCTCTAGTTTTTCCACCTGCTCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      115418 106 +   7069685 GATGGCCC-----T-------------------------GCAGCTCCCACTGCCAT---GCCCTGG-CCTCC-AGCTCACTGATGGCGTCTGTCTTTCC--AGTACTGGATGAATCAAAGTTCTAGTTTCTCCACCCACTCCC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3035728 100 +   3749464 GAAGGCCC-----T-------------------------GCAGCTCCCCCTGCCTT---GCCCTGG-CCTCC-CACTCACTGATGGCATCTCTGCCCCC--AGTAC------AATCGCAGTTCCGGTTTCTTCACCAGCTCAC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72453314 108 - 132174527 GACCACCC-----T-------------------------GCAGCTCCCCCTGCCAT---GCCCTGG-CCTCC-CGCTCACTCATCGTGTCTGTCTCTCCAGAGAGCCTGATGAATAGAAGCTCTAGTTTCTCCACCCTCTCCT
i calJac3.chr10             C 0 C 0
s otoGar3.GL873533          30948530 134 +  31380117 GATGGGCT-----CCTCTAGCCCATTAGGGGCATAACTGGCAGCTCCCCTTGATGG---GCCCTTG-TCTCCATGCTCACCAATGGTGTCTGTCTCTCCGGACAGCTGGATGCAGCGATGTTCCAGTCCCTCCACCTGTTCCT
i otoGar3.GL873533          I 7 C 0
s canFam3.chr9               5823820 104 -  61074082 -------------------------CAGG----------GCTCCCCCCACCCCCGG---GTGCTGGCCCTCC-CACTCACCAATAGTGTCTGTCTCTCCAGAAAGCTGGATGCAGCAATGCTCCAGCTCCTCCACCCGCTCCT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            401550 112 -    584178 ----GCCCCACCAT-------------------------GCAGCTCTCCCTGCCATGGAGCCTATC-CTTTC-TGCTCACCAATAGTGTCCGTCTCTCCAGATAGCTGGATGCAGCGGTGCTCCAGCTCTTCTACCCGCTCCT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9386109 111 +  14477005 I
e cebCap1.NW_016107745v1     1008284 439 -   1842816 I

a score=668458.000000
s hg38.chr15_KI270851v1_alt   252627 81 +    263054 TCAGGTCTGCCTTCTCCTCCAGGTGGTCCATAAAGCTGCTCTGGAGCCAAAATATTGCAGTCACATCTCGGCAGCGACCTG
s panTro5.chr15             72196337 81 -  83230942 TCAGGTCTGCCTTCTCCTCCAGGTGGTCCATAAAGCTGCTCTGGAGCCAAAATATTGCAGTCACATCTCGGCAGCGACCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433139 81 -  99763055 TCAGGTCTGCCTTCTCCTCCAGGTGGTCCATAAAGCTGCTCTGGAGCCAAAATATTGCAGTCACATCTCAGCAGCGACCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       12409 81 -    281578 TCAGGTCTGCCTTCTCCTCCAGGTGGTCCATAAAGCTGCTCTGGAGCCAAAATATTGCAGTCACATCTCGGCAGCGACCTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494030 81 - 121039945 TCAGGTCTGCCTTCTCCTCCAGGTGGTCCATAAGGCTGCTCTGGAGCCAAAATATTGTGGTCACATCTCGGCAGTGACCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8428950 81 + 169600520 TCAGGTCCGCCATCTCCTCCCGGTGGTCCATAAAGCCGCTCTGGAGCCAAAATAATGGGGTCACATCTCGGCAGCGACCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91228132 78 - 171882078 TCAGGTCCAC---CTTCTCCAGGAGGTCCATAAGGCCGCTCTGGAGCCAAAATAATGGTGTCACATCGCGGCAGCAATCTG
i macFas5.chr7              C 0 I 44
s macNem1.NW_012017799v1      409397 78 -   9617498 TCAGGTCCAC---CTTCTCCAGGAGGTCCATAAGGCCACTCTGGAGCCAAAATAATGGTGTCACATCGCAGCAGCAATCTG
i macNem1.NW_012017799v1    C 0 I 44
s cerAty1.NW_012001627v1     4962022 81 +  14009840 TTAGGTCCGCCTTCTCCTCCAGGAGGTCCATAAGGCCACTCTGGAGCCAAAATAATGGTGTCACATCTCAGCAGCGACCTG
i cerAty1.NW_012001627v1    C 0 I 44
s chlSab2.chr26              7576276 81 +  58131712 TCCTGTCCACCTTCTCCTTCGGGAGATTCATAAAGCTGCTCTGGAGCCAAAATAATGGGGTCACATCTTGGGAGTGACCTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      115524 81 +   7069685 TTAGGTCCGCCTTCTCCTCCAGGAGGTCCATAAGGCCACTCTGGAGCCAAAATAATGGTGTCACATCTCGGCAGCGACCTG
i manLeu1.NW_012109919v1    C 0 I 44
s colAng1.NW_012115677v1     3035828 80 +   3749464 TCAGGTCCGCTGTCTCCTCCAGGATATCCATAAGGCCACTCTGGAGCCAAAATAATGGGGTCACATCTCGGCA-CAACTTG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72453422 81 - 132174527 TCAGGTCCACCTTCTCCTTTTGGAGGGTCATAAAGCCGCTCTGAAGTAAAAATAATGGGGTCACATCTCAGCAGTGACCTG
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9386220 81 +  14477005 TCAGGTCCGCCTTCTCCTGCATGAGCTCCATAAATCGGCTCTGGAGCCAAAATAATGGGGTCACATCTCGGCAGCGACCTG
i aotNan1.NW_018502759v1    I 111 C 0
s otoGar3.GL873533          30948664 81 +  31380117 TCAGGTCTGCCTTCTCCTTCATGACCTCCATAAAGCGGTTCTGGTGTTAAAATAATGGGGTCAGGTCTGGGCAGCAACCTG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5823924 78 -  61074082 TCAGCTCCACTTTCTCCTGCATGAGCTCCAGGAAGCGGCCCTGTGGCCAGAGCAGCAGGGTCAGGGTCAGGCAG---CCCG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            401662 80 -    584178 TCAGATCTACTTTCTCTTGCATGAGTCCAGTAAAACGGTCCTGGAGCCAAAATGACAGAGTCAGGAC-CAGCAGCAACTTG
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1008284 439 -   1842816 I

a score=20256.000000
s hg38.chr15_KI270851v1_alt   252708 3 +    263054 CCC
s panTro5.chr15             72196418 3 -  83230942 CCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433220 3 -  99763055 CCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       12490 3 -    281578 CCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494111 3 - 121039945 CCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429031 3 + 169600520 CCC
i rheMac8.chr7              C 0 C 0
s chlSab2.chr26              7576357 3 +  58131712 TCC
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3035908 3 +   3749464 CCC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72453503 3 - 132174527 CCC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9386301 3 +  14477005 CCC
i aotNan1.NW_018502759v1    C 0 I 46
s otoGar3.GL873533          30948745 3 +  31380117 CCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5824002 3 -  61074082 CCC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            401742 3 -    584178 CCC
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1008284 439 -   1842816 I
e manLeu1.NW_012109919v1      115605 44 +   7069685 I
e cerAty1.NW_012001627v1     4962103 44 +  14009840 I
e macNem1.NW_012017799v1      409475 44 -   9617498 I
e macFas5.chr7              91228210 44 - 171882078 I

a score=3785.000000
s hg38.chr15_KI270851v1_alt   252711 1 +    263054 T
s panTro5.chr15             72196421 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433223 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       12493 1 -    281578 T
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494114 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429034 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s chlSab2.chr26              7576360 1 +  58131712 T
i chlSab2.chr26             C 0 I 46
s colAng1.NW_012115677v1     3035911 1 +   3749464 T
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72453506 1 - 132174527 T
i calJac3.chr10             C 0 I 37
s canFam3.chr9               5824005 1 -  61074082 T
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            401745 1 -    584178 C
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9386304 46 +  14477005 I
e otoGar3.GL873533          30948748 0 +  31380117 C
e cebCap1.NW_016107745v1     1008284 439 -   1842816 I
e manLeu1.NW_012109919v1      115605 44 +   7069685 I
e cerAty1.NW_012001627v1     4962103 44 +  14009840 I
e macNem1.NW_012017799v1      409475 44 -   9617498 I
e macFas5.chr7              91228210 44 - 171882078 I

a score=48260.000000
s hg38.chr15_KI270851v1_alt   252712 50 +    263054 CAGGTGGCATTTTC----AAGTCATGGAGAA-GGTGGAGGTGAGT--CC--TGCCATGG
s panTro5.chr15             72196422 50 -  83230942 CAGGTGGCATTTTC----AAGTCATGGAGAA-GGCGGAGGTGAGT--CC--TGGCATGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433224 50 -  99763055 CAGGTGGCATTTTC----AAGTCATGGAGAA-GGCGGAGGTGAGT--CC--TGGCATGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       12494 50 -    281578 CAGGTGGCATTTTC----AAGTCATGGAGAA-GGCGGAGGTGAGT--CC--TGGCATGG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494115 50 - 121039945 CAGGTGGCATTTTC----AAGTCATGGAGAA-GGCGGAGGGGAGT--CC--TGGCGTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429035 54 + 169600520 CAGGTGGCATTTTCAAGTAAGTCATGGAGAA-GCTGGAGGTGAGT--CC--TGGCATGG
i rheMac8.chr7              C 0 I 1
s colAng1.NW_012115677v1     3035912 54 +   3749464 CAGGTGGCATTTTCAAGTAAGTCATGGAGAA-GCTGGAAGTGAGT--CC--TGGCATGG
i colAng1.NW_012115677v1    C 0 C 0
s otoGar3.GL873533          30948748 43 +  31380117 ------GTCCCTTC----CCTTCTTGGCCCATGTCAGGAGAGACT--CCCTTACC----
i otoGar3.GL873533          C 0 I 1
s canFam3.chr9               5824006 35 -  61074082 --GGTGGCCCCACC-----CTTCCAGGGCTG-GCCAGCGA--------C--TG------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            401746 37 -    584178 ----CAACCCTTCT---------TTGCCTAT-GTCAGAAAACACTCACT--TG------
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9386304 46 +  14477005 I
e cebCap1.NW_016107745v1     1008284 439 -   1842816 I
e manLeu1.NW_012109919v1      115605 44 +   7069685 I
e cerAty1.NW_012001627v1     4962103 44 +  14009840 I
e macNem1.NW_012017799v1      409475 44 -   9617498 I
e chlSab2.chr26              7576361 46 +  58131712 I
e calJac3.chr10             72453507 37 - 132174527 I
e macFas5.chr7              91228210 44 - 171882078 I

a score=2100.000000
s hg38.chr15_KI270851v1_alt   252762 1 +    263054 G
s panTro5.chr15             72196472 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433274 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       12544 1 -    281578 G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494165 1 - 121039945 G
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012115677v1     3035966 1 +   3749464 G
i colAng1.NW_012115677v1    C 0 C 0
s canFam3.chr9               5824041 1 -  61074082 G
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958            401783 0 -    584178 C
e aotNan1.NW_018502759v1     9386304 46 +  14477005 I
e otoGar3.GL873533          30948791 1 +  31380117 I
e cebCap1.NW_016107745v1     1008284 439 -   1842816 I
e manLeu1.NW_012109919v1      115605 44 +   7069685 I
e cerAty1.NW_012001627v1     4962103 44 +  14009840 I
e macNem1.NW_012017799v1      409475 44 -   9617498 I
e rheMac8.chr7               8429089 1 + 169600520 I
e chlSab2.chr26              7576361 46 +  58131712 I
e calJac3.chr10             72453507 37 - 132174527 I
e macFas5.chr7              91228210 44 - 171882078 I

a score=7800.000000
s hg38.chr15_KI270851v1_alt   252763 1 +    263054 C
s panTro5.chr15             72196473 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433275 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       12545 1 -    281578 C
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494166 1 - 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429090 1 + 169600520 C
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              91228254 1 - 171882078 C
i macFas5.chr7              I 44 C 0
s macNem1.NW_012017799v1      409519 1 -   9617498 C
i macNem1.NW_012017799v1    I 44 C 0
s cerAty1.NW_012001627v1     4962147 1 +  14009840 C
i cerAty1.NW_012001627v1    I 44 C 0
s manLeu1.NW_012109919v1      115649 1 +   7069685 C
i manLeu1.NW_012109919v1    I 44 C 0
s colAng1.NW_012115677v1     3035967 1 +   3749464 C
i colAng1.NW_012115677v1    C 0 C 0
s otoGar3.GL873533          30948792 1 +  31380117 C
i otoGar3.GL873533          I 1 C 0
s canFam3.chr9               5824042 1 -  61074082 C
i canFam3.chr9              C 0 I 7
e dasNov3.JH564958            401783 0 -    584178 C
e aotNan1.NW_018502759v1     9386304 46 +  14477005 I
e cebCap1.NW_016107745v1     1008284 439 -   1842816 I
e chlSab2.chr26              7576361 46 +  58131712 I
e calJac3.chr10             72453507 37 - 132174527 I

a score=605186.000000
s hg38.chr15_KI270851v1_alt   252764 73 +    263054 CAGCTTCTCCGTGACTTCCTGCAGGG---CCCAGTGGGTCTCCCCACTCACAGACTCGCCCCCAGGCCCTGGGGCT
s panTro5.chr15             72196474 73 -  83230942 CAGCTTCTCCATGACTTCCTGCAGGG---CCCAGTGGGTCTCCCCACTCACAGACTCACCCCCAGGCCCTGGGGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433276 73 -  99763055 CAGCTTCTCCATGACTTCCTGCAGGG---CCCAGTGGGTCTCCCCACTCACAGACTCACCCCCAGGCCCTGGGGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       12546 73 -    281578 CAGCTTCTCCATGACCTCCTGCAGGG---CCCAGTGGGTCTCCCCACTCACAGACTTGCCCCCAGGCCCTGGGGCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494167 73 - 121039945 CAGCTTCTCCATGACTTCCTGCAGGA---CCCGGTGGGTCTCCCCACTCACAGACTCGCCCCCAGTCCCTGGGGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429091 73 + 169600520 CAGCTTCTCCATGACTTCCTGCAGGG---CCCGGTGGGTCTCCGCACTCACAGACTCGCCCCCAGTCCCTGGGGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91228255 73 - 171882078 CAGCTTCTCCATGACCTCCTGCGGGA---CCCGGTGGGTCTCCCCACTCAGAGACTCACCCCCAGTCACTGGCGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      409520 73 -   9617498 CAGCTTCTCCATGACCTCCTGCAGGA---CCCGGTGGGTCTCCCCACTCAGAGACTCACCCCCAGTCACTGGCGCT
i macNem1.NW_012017799v1    C 0 I 6
s cerAty1.NW_012001627v1     4962148 73 +  14009840 CAGCTTCTCCATGACTTCCTGCAGGA---CCTGGTGGGTCTCCTCACTCACAGACTCGCCACCAGTCACTGGGGCT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7576407 71 +  58131712 CAGCTTCTCCATGGCCCCCTGCAGGG---CCCGGTAGGTCTCCCCACACACAAACTCAAACACAGTCCCTGGGG--
i chlSab2.chr26             I 46 C 0
s manLeu1.NW_012109919v1      115650 71 +   7069685 CAGCTTCTCCATGACCTCCTGCAGGG---CCTGGTGGATCTCCCCACTCACAGACTTGCCCCCAGTCACTGGCG--
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3035968 73 +   3749464 CAGCTTCTCCATGACTTCCTGCAGGG---CCCGGTGGGTCTCCCCACTCACAGACTCGCCCCCAGTCCCTGGGACT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72453544 74 - 132174527 CAGCTTCTCTATGGCTCCCTGCAGTGCCTCCTGATTGGTCTCCACACACACAGACTGACTCTCAGTCCCTGAGG--
i calJac3.chr10             I 37 C 0
s aotNan1.NW_018502759v1     9386350 71 +  14477005 CAGCTTCTCCATGGCCTCCTGTAGGG---CCCGGTGGGTCTCCCCACACACAGAATCGCCCCCAGTCCCCGGGG--
i aotNan1.NW_018502759v1    I 46 C 0
s otoGar3.GL873533          30948793 72 +  31380117 AAGTTTCTCCATGTCCACCTGTAGGG---CCCGATGGATTTCCCCAGACACAAAGCCATCTCCAATTTCACAGGC-
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5824050 58 -  61074082 CAGCTTGTCCATGGCCACCTGAAGGG---CCTGGTGGGTCTCCCCAGGCACACTGTCACCA---------------
i canFam3.chr9              I 7 C 0
s dasNov3.JH564958            401783 73 -    584178 CAATTTCTCCATAGCCACCTGTAGGG---CCTGGTGGGTCTCCCCAGACACGCTGTCCCCACCGGTCCCGGGGGGA
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1008284 439 -   1842816 I

a score=-8786.000000
s hg38.chr15_KI270851v1_alt   252837 12 +    263054 CCAGGGCC-TCTG
s panTro5.chr15             72196547 12 -  83230942 CCAGGGCC-TCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433349 12 -  99763055 CCAGGGCC-TCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       12619 12 -    281578 CCAGGGCC-TCTG
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494240  6 - 121039945 --GGGACC-----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429164  6 + 169600520 --GGGACC-----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91228328  6 - 171882078 --GGGATC-----
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001627v1     4962221  6 +  14009840 --GGGATC-----
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7576478  9 +  58131712 CCGGGGCCT----
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      115721  9 +   7069685 CTGGGATCA----
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3036041  6 +   3749464 --GGGACC-----
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72453618  8 - 132174527 CCTGGGCT-----
i calJac3.chr10             C 0 I 7
s aotNan1.NW_018502759v1     9386421  8 +  14477005 GCGGGGCT-----
i aotNan1.NW_018502759v1    C 0 I 1
s otoGar3.GL873533          30948865  7 +  31380117 -AGAGGCT-----
i otoGar3.GL873533          C 0 I 4
s canFam3.chr9               5824108  8 -  61074082 CTGGGGGC-----
i canFam3.chr9              C 0 I 4
s dasNov3.JH564958            401856  6 -    584178 GAAGGG-------
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1008284 439 -   1842816 I
e macNem1.NW_012017799v1      409593  6 -   9617498 I

a score=2354.000000
s hg38.chr15_KI270851v1_alt   252849 1 +    263054 G
s panTro5.chr15             72196559 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433361 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       12631 1 -    281578 G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494246 1 - 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429170 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91228334 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      409599 1 -   9617498 A
i macNem1.NW_012017799v1    I 6 C 0
s cerAty1.NW_012001627v1     4962227 1 +  14009840 A
i cerAty1.NW_012001627v1    C 0 C 0
s colAng1.NW_012115677v1     3036047 1 +   3749464 G
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72453633 1 - 132174527 G
i calJac3.chr10             I 7 I 5
s canFam3.chr9               5824120 1 -  61074082 G
i canFam3.chr9              I 4 C 0
e dasNov3.JH564958            401862 0 -    584178 C
e aotNan1.NW_018502759v1     9386429 1 +  14477005 I
e otoGar3.GL873533          30948872 4 +  31380117 I
e cebCap1.NW_016107745v1     1008284 439 -   1842816 I
e manLeu1.NW_012109919v1      115730 0 +   7069685 C
e chlSab2.chr26              7576487 0 +  58131712 C

a score=375079.000000
s hg38.chr15_KI270851v1_alt   252850 40 +    263054 CTGCCTCTGGCTCCTTCTGGGCCGAGGCCACCGGGTGAGC
s panTro5.chr15             72196560 40 -  83230942 CTGCCTCTGGCTCCTTCTGGGCTGAGGCCACCGGGTGAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433362 40 -  99763055 CTGCCTCTGGCTCCTTCTGGGCTGAGGCCACCAGGTGAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       12632 40 -    281578 CCACCTCTGGCTCCTTCTGGGCCGAGGCCACCGGGTGAGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494247 40 - 121039945 CTGCCTCTGGCTCCTTCTGGGCCGAGGCCACCGGGTGAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429171 40 + 169600520 CTGCCTCTGGCTCCTTCTGGGCCGAGGCCACCAGGTAAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91228335 40 - 171882078 CTGCTTCTGGCTCCTGCTGGGCCGAGGCCACCAGGTGAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      409600 40 -   9617498 CTGCTTCTGGCTCCTGCTGGGCCGAGGCAACCAGGTGAGC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4962228 40 +  14009840 CTGCGACTGGCCCCTGCTGGGCAGAGGCCACCGGGTGAGC
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7576487 40 +  58131712 CAGCCTCTGGCTCCTTCCAAGTCAAGGCCACCAAGTGAGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      115730 40 +   7069685 CTGCGTCTGGCCTCTGCTGGGCAGAGGCCACCGGGTGAGC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3036048 40 +   3749464 CTGCCTCTGGCTCCTTCTGGGCCGAGGCCACCAGGTGAGC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72453639 37 - 132174527 CCGCCGCTGGCTCCTGCA---CCGAGGCCACCGGGTGAGC
i calJac3.chr10             I 5 C 0
s cebCap1.NW_016107745v1     1008723 40 -   1842816 CTGCCTCTGGCTCCTTCAGGGCCGAGGCCACCGGGTGATC
i cebCap1.NW_016107745v1    I 439 C 0
s aotNan1.NW_018502759v1     9386430 37 +  14477005 CCGCCTCAGGCTCCTGGG---CGGAGGCCAGCAGGTGAGC
i aotNan1.NW_018502759v1    I 1 C 0
s otoGar3.GL873533          30948876 37 +  31380117 ---CCTCTGGCTTCTTCTGGGCTGGGACCAGCTGGTGAAC
i otoGar3.GL873533          I 4 C 0
s canFam3.chr9               5824121 40 -  61074082 CCTCCTCCTGCACCTGCTGGCCTGGGGCCACCAGGTGAGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            401862 38 -    584178 --ACCTCCAGCCCATGCTGAGATGAGGCCAACTGACGTGC
i dasNov3.JH564958          C 0 C 0

a score=2024448.000000
s hg38.chr15_KI270851v1_alt   252890 239 +    263054 CAGGCGCTGGCAGCATACCCTCTGCTCTTTCACCTGCTCTTGTAACTGTGCCTGCTTCTCCTGGGCACTAGCTCCAGCGGACTTGAAAAATGCCACCTGAGGGCAAGATGTGAGCAT----TCTTCTAGGGGCATACACAGAAGAAAT--GG--GGCAGAGAGGTGGAGCGCAGCCCCTTCCC--TTGGGGCCTCAGAGAGTGCACCTGTTGGCCACAGGTGAAATGGTGTCTG-ACCACTGGCTCTCG--G
s panTro5.chr15             72196600 237 -  83230942 CAGGCGCTGGCAGCACACCCTCTGCTCTTTCACCTGCTCTTGTAACTGTGCCTGCTTCTCCTGGGCACTAGTTCCAGCGGACTTGAAAAATGCCACCTGAGGGCAAGACACGAGCAT----TCTTGTAGGGGCATACACGGAGCAAAC--GG--GGCAGAGAGGTGGAGTGCAGGCCCTTCCC--TTGGGGCCTCAGAGAGTACAC--GTTTGTCACAGGTGAAATGGTGTCTG-ACCACTGGCTCTCG--G
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433402 237 -  99763055 CAGGCGCTGGCAGCACACCCTCTGCTCTTTCACCTGCTCTTGTAACTGTGCCTGCTTCTCCTGGGCACTAGCTCCAGCGGACTTGAAAAATGCCACCTGAGGGCAAGACACGAGCAT----TCTTGTAGGGGCATACACGGAGCAAAC--GG--GGCAGAGAGGTGGAGTGCAGGCCCTTCCC--TTGGGGCCTCAGAGAGTACAC--GTTTGTCACAGGTAAAATGGTGTCTG-ACCACTGGCTCTCG--G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       12672 239 -    281578 CAGGCGCTGGCAGCACACCCTCTGCTCTTTCACCTGCTCTTGTAACTGTGCCTGCTTCTCCTGGGCACTAGCTCCAGCGGACTTGAGAAATGCCACCTGAGGGCAAGATGTGAGCAT----TCTTCTAGGGGCATACACAGAAGAAAT--GG--GGCAGAGAGGTGGAGCGCAGCCCCTTCCC--TTGGGGCCTCAGAGAGTGCACCTGTTGGCCACAGGTGAAATGGTGTCTG-ACCACTGGCTCTCG--G
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494287 239 - 121039945 CAGGTGCTGGCAGCACACCCTCGGCTCTTTCACCTGCTCTCATAACCGTGCCTGCTCCTCCTGGGCACTGGCTCCAGTGGACTTGAAAAATGCCACCTGAGGGCAAGATGTGAGCAT----TCTTGTAGGGGCATACACAGAAGAAAT--GG--GGCAGAGAGGTGGAGCACAGCCCCTTCCC--TTGGGGCCTCAGAGAGTGCACCTGTTGGTCACAGGTGAAATGGTGTCTG-ACCACTGGCTCTCG--G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429211 227 + 169600520 CAGGTGCTGGCAGTACACCCTCTGCTCTGTCACCCGCTCTCGTAACCGTGCCTGCTCCCCCTGGGCACTGGCTCCAGCGGATTTGAAACATGCCACCTGAGGGCAAGACATGAGCAT----TCTTGTAGGGGCATACACAGAACAAAC--GG--GGCAGAGGGGTGGAGCGCAGCCCCTTCCC--TTGGGGCCTCA------------GTTCGTCACAGGTGAAATGGTGTCTG-ACCACTGGCTCTCG--G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91228375 238 - 171882078 CAGGCACTGGCAGCACACTCTGTGCTCTTTCACCTGCTCTCGGAACTGTGCCTGCTCCTCCTGGGCACTGGCTCCAGCGGGGTTGAAAAATGCCACCTGAGGGCAAGAGGTGAGCAT----TCTTGTAGGGGCATACACAGAACAAAC---G--GGCAGAGAGGTGGAGCGCAGCCCCTTCCC--TTGGGGCCTCAGAGAGTGCACCTGTTGGTCACAGGTGAAATGGTGTCTG-ACCACTGGCTCCCA--G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      409640 238 -   9617498 CAGGAGCTGGCAGCACActctgtgctctgtcacctgctctcggaactgtgcctgctcctcctgggcactggctcCAGCGGGGTTGAAAAATGCCACCTGAGGGCAAGAGGTGAGCAT----TCTTGTAGGGGCATACACAGAACAAAC---G--GGCAGAGAGGTGGAGCGCAACCCCTTCCC--TTGGGGCCTCAGAGAGTGCACCTGTTGGTCACAGGTGAAATGGTGTCTG-ACCACTGGCTCCCA--G
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4962268 235 +  14009840 CAGGCGCTGGCAGCACACCCTCTACTTTTTCACTTGCTCTCATAACCATGCCTGCTCCTCCTGGGCACTGGCTCCAGTGGGATTGAAA-ATGCCACCTGAGGGCAAGAAATGAGCAT----TCTTGTAGGGGCACACACAGAACAAAC---G--GGCAGAGAGGTGGAGCGCAGCCCCTTCCC--TTGAGGCCTCA--GAGTGCACCTGTTGGTCACAGGTGAAATGGTGTCTG-ACCACTGGCTCCCA--G
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7576527 239 +  58131712 CAGGTATGGGCAACACCGCCTTTGCACCTTCTGCTGTCCACATAGCCATACCTGCTCCTCCTGGGCAGTGGCTCCAGTGGAGTTGAAAAATGCCACATGAAGGCAAGAGCTGAGTAT----TCTTGTAGGGGCATACACAAAACAAAT--GG--GGCAGGGAGGTGGAGCACAGCCCCTTCCC--TTGGGGTCTCAGAGAGTGCACCTGTTGGTCACAGGTGAAATGGTGTCTG-AACACTGGCTCCCA--G
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      115770 235 +   7069685 CAGGCGCTGGCAGCACACCCTCTACTTTTTCACTTGCTCTCATAACCATGCCTGCTCCTCCTGGGCACTGGCTCCAGTGGGGTTG-AAAATGCCACCTGAGGGCAAGAAGTGAGCAT----TCTTGTAGGGGCACACACAGAACAAAC---G--GGCAGAGAGGTGGAGCGCAGCCCCTTCCC--TTGAGGCCTC--AGAGTGCACCTGCTGGTCACAGGTGAAATGGTGTCTG-ACCACTGGCTCCCA--G
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3036088 239 +   3749464 CAGGCGCTGGCAGCACACCCTCTGCTCTTTCACCCGCGCTCGTAACCGTGCCTGCTCCTCCTGGGCACTGGCTCCAGCGGACTTGAAAAATGCCACCTGAGGGCAAGAGGTGAGCAT----TCTTGTAGGGGCATACACAGAACAAAT--GG--GGCAGAAAGGTGGAGCGCAGCCCCTTCCC--TTGGGGCCTCAGAGAGTGCACCTGTTGGTCACAGGGGAAATGGTGTCTG-ACCACTGGCTCTCG--G
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72453676 233 - 132174527 CAGGTGCTGGTAGCACACCCTTCGTTCCTGAGGCTGCATACACAGTTGTTCCTGCTCCTCCTGGGCACTGGCCCCAGCCGAGTTGAAAAATGCAACCTGATCACAAGAGGTGAACAT----TCTTGTAGGGGCAAACACAGAACAAAC---G--GGCAGGGAGGCAGAATGCAGCCCCAACCC--TTGGGGCCTCAGAGCA-----CTGTCGGTCACAGGTGAAATGGTGTCTG-AGCACTGGCTCCCA--G
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1008763 233 -   1842816 CTGGTGCTGGCAGCACACCTGTTGTTTCTGGAGCTGCTCACAGAGCCGTGACTGCTCCTCCTGGGCACCTGCTCCAGCAGCATTCAGAAATGGCACCTGAAGGCAAGAGGGGAGCAT----TCTTGTAGGGACATACACAGGACAGAC--GG--GGCAGGGAGGTGGAGCGCAGCCCCTTCCC--TTGGGGCCTCAGAGAGTGCACCTGTCGGTCAC------GATGGTGTCTG-ACCACTGGCTCCCA--G
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9386467 240 +  14477005 CAGGCGCCGGCAGCGCACCCTTTGCTCCTTCAGCTGCCCACGTAGCTTTGCCTGCTCCTCCTCAGCACTGGCTACAGCCGAATTGAAAAATGCCACCTGCAGGCAAGAGAGGTGCAT----TCTTGGATGGGGATACACAGGACGAAC--AA--GGCAGGGAAGTGGAGAGTAG-CCCTTCCC--CTGGGGCCTCAGAGGCTGCACCTGTTGGTCACAGGTGAAATGGTGTCTG-ATCACTGGCTCCCAGGG
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9               5824161 244 -  61074082 CAGACGCTGGCAGCGCAGCTTCTGCTTCTTCAGCTGCCCGCGCAGCCGTGCCTGCTCCTCCTCAGCACTGGCTAAGGCCGAGTTAAAAAATGCCACCTGCAGGTGAGACATGTGTGTGTGCTCTTGTGGGGG-ATACTCAGGGTGACC--AGGTGGCAGGAAGGCAGAGAGAAGCTCCTCCTC--TCCTGGCCTTCGTGGGCACATCTGCGCTTCAAGGATGGTGCCGAGGCTG-ACCGCTGGGTCCCA--T
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            401900 240 -    584178 CAGGTGCTGGCAGCGTAGTTTTTGTTCCTTCAGCTGCCCCCGCAGCTGTGCCTGCTCTTCTTTAGCACCGGCTAGGGCGGAGTTCAAAAATGCCACCTGCAGGCAAAA---GTGCTT----TTATGGAAGGA-ATACTGAGGAAGAGCCTTC--AGTAGGAAAGCCAAAGGGAGCCTTTCCCCTGTCTGGGCCTCAGTGTGCTCACCTGTTGGTCAATGGCTGGGGTGTGTCTGAACCACCGGTTCCCA--G
i dasNov3.JH564958          C 0 C 0
e otoGar3.GL873533          30948913   0 +  31380117 C

a score=800872.000000
s hg38.chr15_KI270851v1_alt   253129 83 +    263054 --AAGGGGTGAGGGTCCAGAGAAATCAGAAGGCAGGGAAAC-GAAGAGCATAAAGGGGT----CTTGGAGGG----ACCACAG--------AGAAAGGTGGC
s panTro5.chr15             72196837 83 -  83230942 --AAGGGGTGAGGGTCCAGAGAAATCAGAAGGCAGGGAAAC-GAAGAGCATAAAGGGGT----CTTGGAGGG----ACCACAG--------AGAAAGGTGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433639 83 -  99763055 --AAGGGGTGAGGGTCCAGAGAAATCAGAAGGCAGGGAAAT-GAAGAGCATAAAGGGGT----CTTGGAGGG----ACCACAG--------AGGAAGGTGGC
i panPan2.chr15             C 0 I 1
s gorGor5.CYUI01000141v1       12911 83 -    281578 --AAGGGGTGAGGGTCCAGAGAAATCAGAAGGCAGGGAAAC-GAAGAGCATTAAGGGGT----CTTGGAGGG----ACCACAG--------AGGAAGGTGGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494526 83 - 121039945 --AACGGGTGAGGGTCCAGAGAAATCAGAAGGCAGGGAATC-TAAGAGCATAAAGGGGT----CTTGGAGGG----ACCACAG--------AGGAAGGTGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429438 83 + 169600520 --AAGGGATGAGGGCGCAGAGAAATCAGAAGGCAGGGAAAG-TAAGAGCATAAAGGGGT----CTTGCAGGG----ACCACAG--------AGGAAGGTGGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91228613 83 - 171882078 --AAGGGGTGAGGGTCCAGAGAAATCAGAAGGCAGGGAAAC-CAAGAGCATAAAGGGGT----CTTGGAGGG----ACCACAG--------AAGAAGATGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      409878 83 -   9617498 --AAGGGGTGAGGGTCCGGAAAAATCAGAAGGCAGGGAAAC-CAAGAGCATAAAGGGGT----CTTAGAGGG----ACCACAC--------AGGAAGGTGGC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4962503 83 +  14009840 --AAGGGGTGAGGGTCCAGAGAAATCAGAAGGCAGGGAAAC-TAAGAGCATAAAGGGGT----CTTGGAGGG----AGCACAC--------GGGAAGGTGGC
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7576766 83 +  58131712 --AAGGGGTGAGGGTCCAGAGAAATCAGAAGGTGGGGAAAC-CAAGAGCATAAGTGGGT----CTGGGAGGG----ACCACAG--------AGGAAGGTGGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      116005 83 +   7069685 --AAGGGGTGAGGGTCCAGAGAAATCAGAAGACAGGGAAAC-CAAGAGCATAAAGGGGT----CTTGGAGGG----AGCACAC--------AGGAAGGTGGC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3036327 84 +   3749464 --AAGGGGTGAGGGTGCAGAGAAATCAGAAGGCAGGGAAACTTAAGAGCATAAAGGGGT----CTTGGAGGG----ACCACAG--------AGGAAGGTGGC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72453909 83 - 132174527 --AAGAGGTGAGTGTCCAGAGAAATCAGAAGGTGAAGAAAC-CAAGAGCATAAGAAGGT----CTGGGAGGG----ACCACAG--------AGGAAGGTGGC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1008996 83 -   1842816 --AAGGGGTGAGGGTCCAGAGGAATCAGAAGGTGGAGAAAC-CAAGAGCATAAGGGGGT----CTGGGAGGG----ACCACAG--------AGGAAGGTGGC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9386707 77 +  14477005 --AAGGGGTGAGGGTCCAGAAAACTCAGAAGGCCAGGAAAC-CAA------AAGGAGGT----CTGGGAGGG----ACCACAA--------AGGGAGGCAGC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30948913 90 +  31380117 --AGGAAGTAGGTGTTAAGAGAAATCAGAGGGCAGGGAAAC-CAAGAGCATGAGGGTCT----CTGGGA-GG----ACCACAGTGGGGGCAAGAATGGTGGG
i otoGar3.GL873533          C 0 I 1
s canFam3.chr9               5824405 87 -  61074082 ---GGGTTTGAGGGTTGAGAGAGGTTGAGGG---AGGGAAC-CAAGAAGAAAGGAGGGTGCCCCTGGGAGGGGGTTACCACAG--------AGGGAAGCGGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            402140 77 -    584178 GGGAGGTGGAGAGATCAAGGGAAGTCAGAGGGCAGGGAAAC-CAAGAGT--------GA----TTGGCAGGG----ACTATAG--------AGGGAGGTCGG
i dasNov3.JH564958          C 0 C 0

a score=1429448.000000
s hg38.chr15_KI270851v1_alt   253212 179 +    263054 -AAAATGGG--------------TGCAGGGG-GAGTCAG---------GCTCACCATGGCCTCCCTGCTCTCCAGGTCCTCTGGGACACTCGGCATGGGCCGAGGTGCCTCCT------------C------CCCCTCACTGTC-----------------------------CAGATGT--------------------------------TCTCCTCC--------------------GTGTCCTGTGGGG-GGTGGCCAGAGGGGTCTT----CAGACAACCCAACAAGGGAGG---TACTGTGGGCC-------------------
s panTro5.chr15             72196920 178 -  83230942 -AAAATGGG--------------TGCAGGGG-GAGTCAG---------GCTCACCATGGCCTCCCTGTTCTCCAGGTCCTCTGGGACACTCTGCATGGGC-GAGGTGCCTCCT------------C------CCCCTCACTGTC-----------------------------CAGATGT--------------------------------TCTCCTCC--------------------GTGTCCTGTGGGG-GGTGGCCAGAGGGGTCTT----CAGACAACCCAACAAGGGAGG---TACTGTGGGCC-------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433723 178 -  99763055 -AAAATGGG--------------TGCAGGGG-GAGTCAG---------GCTCACCATGGCCTCCCTGTTCTCCAGGTCCTCTGGGACACTCTGCATGGGC-GAGGTGCCTCCT------------C------CCCCTCACTGTC-----------------------------CAGATGT--------------------------------TCTCCTCC--------------------GTGTCCTGTGGGG-GGTGGCCAGAGGGGTCTT----CAGACAACCCAACAAGGGAGG---TACTGTGGGCC-------------------
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01000141v1       12994 178 -    281578 -AAAATGGG--------------TGCAGGGG-GAGTCAG---------GCTCACCATGGCCTCCCTGTTCTCCAGGTCCTCTGGGACACTCGGCACGGGCTGAGGTGCCTCCT-------------------CCCCTCACTGTC-----------------------------CAGATGT--------------------------------TCTCCTCC--------------------GTGCCCTGTGGGG-GGTGGCCAGAGGGGTCTT----CAGACAACCCAACAAGGGAGG---TACTGTGGGCC-------------------
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494609 149 - 121039945 -AAAGTGGG--------------TGCAGGGG-GAGTCAG---------GCTCACCGTGGCCTCCCCGCTCTCCAGGTCCTCTGGGACGCTCGGCATGGGCCGAGG-------------------------------------------------------------------------------------------------------------TTCTCC--------------------ATCTCCTGTGGGG-GGTGGCCAGAGGGGTCCT----CAGACAACCCAAAAAGGGAGG---TACCGTGGGCC-------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429521 179 + 169600520 -AAAATGGG--------------TGCGGGGG-GAGTCAG---------GCTCACCATGGCCTCCCAGCTCTCCTGGTCCTCTGGGACGCTCGGCATGGGCCGAGGTCCCTCCT------------C------CTCCTCACTGTC-----------------------------CAGATGT--------------------------------CCTCCTCC--------------------ATCTCCTGTGGGG-AGTGGCCAGAGGGCTCCT----CAGACAACCCAACAAGGGAGG---TACTGTGGGCC-------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91228696 179 - 171882078 -AAAATGGG--------------TGCAGGGG-GAGTCAG---------GCTCACCATGGCCTCCCAGCTCTCCAGGTCCTCCGGGACGGTCGGCATGGGCTGAGGTGCCTCCT------------C------CTCCTCACTGTC-----------------------------CAGATGT--------------------------------CCTCCTCC--------------------ATCTCCTGTGGGG-GGTGGCCAAAAGGGTCCT----TAGACAACCTAACAAGGGAGG---TACTGTGGGCC-------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      409961 179 -   9617498 -AAAATCGG--------------TGCAGGGG-GAGTCAG---------GCTCACCATGGCCTCCCAGCTCTCCAGGTCCTCCGGGACGGTCAGCATGGGCTGAGGTGCCTCCT------------C------CTCCTCACTGTC-----------------------------CAGATGT--------------------------------CCTCCTCC--------------------ATCTCCTGTGGGG-GGTGGCCAAAAGGGTCCT----CAGACAACCCAACAAGGGAGG---TACTGTGGGCC-------------------
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4962586 179 +  14009840 -AAAATGGG--------------TGCAGGGG-GAGTCAG---------GCTCACCATGGCCTCCCAGCTCTCCAGGTCCTCCGGGATGCTCAGCATGGGCTGAGGTGCCTCCT------------C------CTCCTCACTGTC-----------------------------CAGATGT--------------------------------CCTCCTCC--------------------ATCTCCTGTGGGA-GGTGGCCAAAAGGGTCCT----CAGACAACCCAACAAGGGAGG---TACTGTGGGCC-------------------
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7576849 179 +  58131712 -AAAGTGGG---------------GCAGGGA-AAGTCAG---------ACTCACCATGGCCTCCTGGCTCTCCAGGTCCTTTGGGATACTTGGCATGAGCTGAGGCACTTCCT------------C------CTCCTCATCGTC-----------------------------CAGATGA--------------------------------CCTCCTTC--------------------ATCTCCTGTGGGGAGGTGGCCAGAGGGGTCCT----CAGACAACCCAACTAGGGAGG---TATTGCGGGCC-------------------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      116088 179 +   7069685 -AAAATGGG--------------TGCAGGGG-GAGTCAG---------GCTCACCATGGCCTCCCAGCTCTCCAGGTCCTCCGGGACGGTCAGCATGGGCTGAGGTGCCTCCT------------C------CTCCTCACTGTC-----------------------------CAGATGT--------------------------------CCTCCTCC--------------------ATCTCCTGTGGGG-GGTGGCCAAAAGGGTCCT----CAGACAACCCAACAAGGGAGG---TACTGTGGGCC-------------------
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3036411 179 +   3749464 -AAAATGGG--------------TGCGGGGG-GAGTCAG---------GCTCACCATGGCCTCCCAGCTCTCCAGGTCCTCTGGGACGCTCGGCAAGGGCTGAGGTGCCGCCG------------C------CTCCTCACTGTC-----------------------------CAGATGT--------------------------------TCTCCTCC--------------------ATCTCCTGTGGGG-GGTGGCCAGAGGGCTCCT----CAGACAACCCAACAAGGCAGG---TACTGTGGGCC-------------------
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72453992 176 - 132174527 -AAAGGAGG--------------GGCAGGGG-GAGTCAG---------GCTCACCATGGCCTCTCGGCTCTCCAGGGCCTCTGCAATGC------TGGGCCGAGGCTCCTCCT------------C------CTCCTCACTGTC-----------------------------CAGATGT--------------------------------CCTCCTCC--------------------ATCTCCTGTGGGG-TGTGGCCAGAGGGGTCCG----CACACAACCCAACAAGGGAGGTACTTCTGTGGGCC-------------------
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9386784 176 +  14477005 -AAAGGTGG--------------GGCAGGAG-GAGTCAG---------CCTCACCATGGCCTCCCTGCTCTCCAGGTCCTCTGGGATGCTTGGCATGGGCCAAGGCAcctcct------------c------ctcctcctcgtc-----------------------------ctccCTG--------------------------------TCCAGTCC--------------------ATCTCCTATTGGG-GGTGGCCAGAGGAGTCAT----CAGACAACCTAACAAGGG------TACAGTGGGCC-------------------
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30949004 272 +  31380117 -CAGAGAAG--------------GGCTGGGA-AGATCAT---------GTTTACCATGGCTTCTCGGCTATCTAGGTCCTCCGAGATGCTCAGCATGGGCCTAGAGGcctcctcatctggtacttc------ctcctccttctccactcccttctcctctgcaacctcattctcaggtgtctctgtcttcattgctgcctccttctctgctccctccttctGTCCACCCTTGTCCAATATATCTCCTATTGGG-GACAGCCAGAGGGGTCCT----CAGACAACTCAACAAGAGAAA---TAAAGTGGGCC-------------------
i otoGar3.GL873533          I 1 C 0
s canFam3.chr9               5824492 183 -  61074082 -AAGGTGGG--------------ACGAGGAA-GGGGCAGCGGGGGTCTGCTCACCACGGCCTCTCGGCTCTCCAGGTTCTCTGGCATGCTCAGCTTTGGCTGGGCAGCCTCTT------------CTTCCTTCTCCTCACTGTC-----------------------------CAA-----------------------------------------TCC--------------------ATCTCCTGTCAGG-GCAGAT--GGAGGGTCCT----CAGACAACCCAACAGGGGAGG---TAAAGCGGGCC-------------------
i canFam3.chr9              C 0 I 15
s dasNov3.JH564958            402217 215 -    584178 AAAGGTGGGGCAGAGACGGAAAGGGCAGGGGCGAGTCAG---------GCTCACCATGGCCTCTCTGCTATCTAGGTCTTCGGGGATGCTCAGCTCTGGATGATGAGCCTCTT------------CATCCCTTTCCTCACTGTC-----------------------------CAG-----------------------------------------TCG--------------------ATCTCCTGTTGGG-AGCGGCCAGAGGGCTCCTCAGACAGACAACCCAACAAGGCGGG---TGGAGTGGTCCAGGAAGAAAGCTCACAGCC
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1009079   0 -   1842816 C

a score=260130.000000
s hg38.chr15_KI270851v1_alt   253391 32 +    263054 CACCTCTACCTCCACCCTCACTGTGTAATCCT
s panTro5.chr15             72197098 32 -  83230942 CACCTCTACCTCCACCCTCACTGTGTAACCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433901 32 -  99763055 CACCTCTACCTCCACCCTCACTGTGTAACCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       13172 32 -    281578 CACCTCTACCTCCACCCTCACTGTGTAACCCT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494758 32 - 121039945 CACCTCTACCTCCACCCTCACTGTGTAACCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429700 32 + 169600520 CACCTCTGCCTCCACCCTCACTGGGTAACCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91228875 32 - 171882078 CACCTCTACCTCCACCATCACTGTGTAACCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      410140 32 -   9617498 CACCTCTACCTCCACCATCACTGTGTAACCCT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4962765 32 +  14009840 CACCTCTGCCTCCACCCTCACTGTGTAACCCT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7577028 30 +  58131712 CACGTCT--CCCCACCCTCACTGTGTAACCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      116267 32 +   7069685 CACCTCTGCCTCCACCCTCACTGTGTAACCCT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3036590 32 +   3749464 CACCTCTGCCCCCACCCTCACTGGGTAACCCT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72454168 32 - 132174527 CACCTCTGCCTCCACCCTCACCGTGTAACCCT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9386960 32 +  14477005 CACCTCTGCCCTCACCTTCACTGTGTAAACCT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30949276 22 +  31380117 CACGT--------AACCTCA-TGTGCGAT-CT
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958            402432 31 -    584178 CACCTCTGCCATCACC-TCACTATGCAACCCT
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9               5824675 15 -  61074082 I
e cebCap1.NW_016107745v1     1009079  0 -   1842816 C

a score=142479.000000
s hg38.chr15_KI270851v1_alt   253423 15 +    263054 GAGCCAGCCCCTCCC
s panTro5.chr15             72197130 15 -  83230942 GAGCCAGCCCCTCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433933 14 -  99763055 GAGCCAG-CCCTCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       13204 15 -    281578 GAGCCAGCCCCTCCC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494790 15 - 121039945 GAGCCAGCCCCTCGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429732 15 + 169600520 GAGCCAGCCCCTCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91228907 15 - 171882078 GAGCCAGCCCCTACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      410172 15 -   9617498 GAGCCAGCCCCTACC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4962797 15 +  14009840 GAGCCAGCCCTTACC
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7577058 15 +  58131712 GATCCAGCCCCTCCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      116299 15 +   7069685 GAGCCAGCCCTTACC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3036622 14 +   3749464 GAGCCAGCCC-TCCC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72454200 15 - 132174527 GAGCCAGCCCCTCCC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9386992 15 +  14477005 GAGCCAGCCCCTCCC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30949298 15 +  31380117 GGGCCAGCCCCTCCC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5824690 15 -  61074082 GGGCCAGTGCATCCC
i canFam3.chr9              I 15 C 0
s dasNov3.JH564958            402463 15 -    584178 GGGCCAGCTACTCCC
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1009079  0 -   1842816 C

a score=92876.000000
s hg38.chr15_KI270851v1_alt   253438 11 +    263054 CAGAGAGGAAT
s panTro5.chr15             72197145 11 -  83230942 CAGAGAGCAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433947 11 -  99763055 CAGAGAGCGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       13219 11 -    281578 CAGAGAGGAAT
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494805 11 - 121039945 CAGAGAGGAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429747 11 + 169600520 CAGACAGGAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91228922 11 - 171882078 CAGAGAGGAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      410187 11 -   9617498 CAGAGAGGAAT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4962812 11 +  14009840 CAGAGAGGAAT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7577073 11 +  58131712 CAGAGGGAAAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      116314 11 +   7069685 CAGAGAGGAAT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3036636 11 +   3749464 CAGAGAGGAAT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72454215 11 - 132174527 CACAGAGGAAT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9387007 10 +  14477005 CAGAG-GGAAT
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9               5824705 11 -  61074082 CAGAGAAGAAT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            402478 11 -    584178 CAGAGGAAAAT
i dasNov3.JH564958          C 0 C 0
e otoGar3.GL873533          30949313  0 +  31380117 C
e cebCap1.NW_016107745v1     1009079  0 -   1842816 C

a score=344501.000000
s hg38.chr15_KI270851v1_alt   253449 63 +    263054 GAGCTGTTGTTCTT--------TATTTTTACTTTTA-AGAATCAAGATCTTgctattccgcccaggcacatt
s panTro5.chr15             72197156 63 -  83230942 GAGCTGTTGTTCTT--------TATTTTTACTTTTA-AGAATCAAGATCTTgctattccgcccaggcacact
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71433958 62 -  99763055 GAGCTGTTGTTCTT--------TA-TTTTACTTTTA-AGAATCAAGATCTTgctattccgcccaggcacact
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       13230 63 -    281578 GAGCTGTTGTTCTT--------TATTTTTACTTTTA-AGAATCAAGATCTTgctattccgcccaggcacact
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494816 63 - 121039945 GAGCTGCTGTTCTT--------TATTTTTACTTTTA-AGAATCAAGATCTTCCTATTCCGCCcaggcacact
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429758 63 + 169600520 AAGCTACTGTTCTT--------TATTTTTCCTTTTA-AGAACCAAGATCTTGCTATACCGCCcaggcacagt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91228933 63 - 171882078 AAGCTGCTGTTTTT--------TATTTTTACTTTTA-ACGACAAAGATCTTGCTATACTGCCcaggcacagt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      410198 63 -   9617498 AAGCTGCTGTTTTT--------TATTTTTACTTTTA-ACGACAAAGATCTTGCTATACTGCCcaggcacagt
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4962823 63 +  14009840 AAGCTGCTGTTCTT--------TATTTTTACTTTTA-ACGACAAAGATCTTGCTATACTGCCcaggcacagt
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7577084 61 +  58131712 GAGCTGCTGttctt--------tatttttcctttta-agaaccaagatcttgctatattgcccagg--cagt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      116325 63 +   7069685 AAGCTGCTGTTCTT--------TATTTTTACTTTTA-ACGACAAAGATCTTGCTATACTGCCcaggcacagt
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3036647 63 +   3749464 GAGCTGCTGTTCTT--------TATTCTTCCTTTTA-AGAACCAAGATCTGGCTATACCGCCcaggcacagt
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72454226 61 - 132174527 GAGCTACTGTTC----------TTTTTTTACTTTTA-AGAACCGAGATCTTGCTGTACTTTCcaggcacagt
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9387017 72 +  14477005 GAGCAGCTTTCCTTAAtttttattttattacttttgcagagccaagggctcactatgttgcccaggtgcagc
i aotNan1.NW_018502759v1    C 0 C 0
s dasNov3.JH564958            402489  4 -    584178 --------------------------------------------------------------------CATT
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9               5824716  0 -  61074082 C
e otoGar3.GL873533          30949313  0 +  31380117 C
e cebCap1.NW_016107745v1     1009079  0 -   1842816 C

a score=688501.000000
s hg38.chr15_KI270851v1_alt   253512 100 +    263054 cccactactggtcgatgtgggagttctgacctgctccctttctgaccttggccagttcagccatccttaggcaacttggtggccc---cccgctcacaggagg
s panTro5.chr15             72197219 100 -  83230942 cccactactggtcgatgtgggagttctgacctgctccctttctgaccttggccagttcagccatccttaggcaacttggtgaccc---cccgctcacaggagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71434020 100 -  99763055 cccactactggtcgatgtgggagttctgacctgctccctttctgaccttggccagttcagccatccttaggcaacttggtgaccc---cccgctcacaggagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       13293 100 -    281578 cccactactggtcgatgtgggagttctgacctgctccctttctgaccttggccagttcagccatccttaggcaacttggtgaccc---cccgctcacaggagg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494879 100 - 121039945 cccactactggtcgatgtgggagttctgacctgctccctttctgacctgggccagttcagccatccttaggcaacttggtggccc---cctgctcacaggagg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429821 101 + 169600520 cccactaccggtcggtgcaggagttctgacctgctccgtttctgacctgggccagttcagccatccttaggcaacttggtggccc-cacc-gctcccaggagg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91228996  99 - 171882078 cccactaccggtcagtgctggagttctgacctgctccatttctgacctgggccagttcagccatccttaggcaacttggtggacc---cc-actcccaggaag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      410261  99 -   9617498 cccactaccggtcagtgctggagttctgacctgctccatttctgacctgggccagttcagccatccttaggcagcttgctggacc---cc-actcccaggaag
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4962886  99 +  14009840 cccactactggtcagtgctggagttctgacctgctccatttctgacctgggccagttcagctatccttaggcaacttggtggacc---cc-gctcccaggagg
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7577145 100 +  58131712 cccactaccagtcggtgtgggagttctgaactgctccctttctgatctgggccagttcactcatccttaggcaatctggtggccc---cctgctcccagtagg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      116388  99 +   7069685 cccactactggtcagtgctggagttctgacctgctccatttctgacctgggccagttcagctatccttaggcaacttggtggacc---cc-gctcccaggaag
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3036710 100 +   3749464 cccactaccggtcggtgcaggagttctgacctgctccctttctgacctgggccagttcagccatccttaggcaacttggtggccc---cccgctcccaggagg
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72454287 102 - 132174527 cccactaccaatcggtgt-ggagttctgacccgctccctttctgatctgggccagttcacccttccttaggcaacctggtggcccccacccacttccaggtgg
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9387089 100 +  14477005 cccactacccatcagcacaggagttctaacctgcgccatttctgacctgggccagttcacccatccttaggcaacctggtagtcc---cctgctcccaggaag
i aotNan1.NW_018502759v1    C 0 C 0
e dasNov3.JH564958            402493   0 -    584178 C
e canFam3.chr9               5824716   0 -  61074082 C
e otoGar3.GL873533          30949313   0 +  31380117 C
e cebCap1.NW_016107745v1     1009079   0 -   1842816 C

a score=274833.000000
s hg38.chr15_KI270851v1_alt   253612 41 +    263054 tcaccacactgatgcccaacttagtgcaggcacccggtcgg
s panTro5.chr15             72197319 41 -  83230942 tcaccacactgatgccgaacttagtgcaggcacccggtcgg
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71434120 41 -  99763055 tcaccacactgatgccgaacttagtgcaggcacccggtcgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       13393 41 -    281578 tcaccacactgatgccgaacttagtgcaggcacccggtcgg
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44494979 41 - 121039945 tcaccacactgatgccagacttagtgcaggcacccggtcgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429922 41 + 169600520 tcaccatattgatgccgaacttagtgcaggcacccggtcgg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91229095 41 - 171882078 tcaccatattgatgccgaacttagtgcaggcacccagtcgg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      410360 41 -   9617498 tcaccatattgatgccgaacttagtgcaggcacccagtcgg
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4962985 41 +  14009840 tcaccatattgatgccgaacttagtgcaggcacccagtcgg
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7577245 39 +  58131712 tcaccatattcatgccg--tttattgcagacacccggttgg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      116487 41 +   7069685 tcaccatattgatgccgaacttagtgcaggcacccagtcgg
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3036810 41 +   3749464 tcaccatattgatgccgaacttagtgcaggcaccctgtcgg
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72454389 41 - 132174527 tcaccatattgatgccgaacttagtgcagacacctggtcag
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9387189 41 +  14477005 tcactgtactgatgcccaacttagtgtggacagctggtgag
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9               5824716  4 -  61074082 TCAC-------------------------------------
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958            402493  0 -    584178 C
e otoGar3.GL873533          30949313  0 +  31380117 C
e cebCap1.NW_016107745v1     1009079  0 -   1842816 C

a score=80676.000000
s hg38.chr15_KI270851v1_alt   253653 10 +    263054 cataATGACC
s panTro5.chr15             72197360 10 -  83230942 cataATGACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71434161 10 -  99763055 cataATGACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       13434 10 -    281578 cataATGACC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44495020 10 - 121039945 catagtgACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               8429963 10 + 169600520 cataATGACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91229136 10 - 171882078 cataAGGACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      410401 10 -   9617498 cataAGGACC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4963026 10 +  14009840 cataAGGACC
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7577284 10 +  58131712 cataATGACC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      116528 10 +   7069685 cataAGGACC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3036851 10 +   3749464 cataATGACC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72454430 10 - 132174527 cataATGACC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9387230 10 +  14477005 cataATGACC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30949313 10 +  31380117 CATAATCATA
i otoGar3.GL873533          C 0 C 0
e dasNov3.JH564958            402493  0 -    584178 C
e canFam3.chr9               5824720  0 -  61074082 C
e cebCap1.NW_016107745v1     1009079  0 -   1842816 C

a score=1418265.000000
s hg38.chr15_KI270851v1_alt   253663 158 +    263054 AG----CTGTTCTAAAGGTCTCTTCCAACTCCTCAATCCTATGCTGCTAGCAGTCCCC-CCT--TCCTCCTGGGGCTCTCTCCTCTTCCTCTGAGCGGTCTCC--CGTACCTTCCCCAGGGAGAGCCATGAGGCTCAGCTGGGCTGTTAGCTGCTGGTTCTGCTGGC
s panTro5.chr15             72197370 158 -  83230942 AG----CTGTTCTAAAGGTCTCTTCCAACTCCTCAATCCTATGCTGCTAGCAGTCCCC-CCT--TCCTCCTGGGGCTCTCTCCTCTTCCTCTGAGCGGTCTCC--CGTACCTTCCCCAGGGAGAGCCATGAGGCTAGGCTGGGCTGTTAGCTGCTGGTTCTGCTGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71434171 158 -  99763055 AG----CTGTTCTAAAGGTCTCTTCCAACCCCTCAATCCTATGCTGCTAGCAGTCCCC-CCT--TCCTCCTGGGGCTCTCTCCTCTTCCTCTGAGCGGTCTCC--CGTACCTTCCCCAGGGAGAGCCATGAGGCTAGGCTGGGCTGTTAGCTGCTGGTTCTGCTGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       13444 158 -    281578 AG----CTGTTCTAAAGGTCTCTTCCAACTCCTCAATCCTATGCTGCTAGCAGTCCCC-CCT--TCCTCCTGGGGCTCTCTCCTCTTCCTCTGAGCGGTCTCC--CGTACCTTCCCCAGGGAGAGCCATGAGGCTCAGCTGGGCTGTTAGCTGCTGGTTCTGCTGGC
i gorGor5.CYUI01000141v1    C 0 C 0
s nomLeu3.chr6              44495030 158 - 121039945 AG----CTGTTCTAAAGGTCTCTTCCAACTCCTCAATCCTATGCTGCTAACAGTCCCC-CCT--TCCTCCTGGGGCTCTCTCCTCTTCCTCTGAGCGGTCTCC--CGTACCTTCCCCAGGGAGAGCCATGAGGCCCAACTGGGCTGTTAGCTGCTGGTTCTGCTTGC
i nomLeu3.chr6              C 0 N 0
s rheMac8.chr7               8429973 158 + 169600520 AG----CTGTTCTAAAGGTCTCTTCCAACTCCTCAATCCTGTGCTGCTAACAGTCCCC-CCT--TCCTCCTGGGGCTCTGTCCTCTTCCTCTGAGTGGCCTCC--CGTACCTTCCCCAGGGAGAGCCGTGAGGCTCAGTTGGTCctgcagctgctgcttctgctggc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91229146 158 - 171882078 AG----CTGTTCTAAAGGTCTCTTCCAACTCCTCAATCCTGCGCTGCTAACAGTGCCC-CCT--TCCTCCTGGGGCTCTCTCCTCTTCCTCTGAGCAGGTTCC--CGTACCTTCCCCAGGAAGAACCATGAGGCTCAGCTGGGCCTGTAGGGGCTGGTTCTGCTGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      410411 158 -   9617498 AG----CTGTTCTAAAGGTCTCTTCCAACTCCTCAATCCTGCGCTGCTAACAGTGCCC-CCT--TCCTCCTGGGGCTCTCTCCTCTTCCTCTGAGCAGGTTCC--CATACCTTCCCCAGGAAGAACCATGAGGCTCAGCTGGACCTGTAGGGGCTGGTTCTGCTGGC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4963036 158 +  14009840 AG----CTGTTCTAAAGGTCTCTTCCAACTCCTTAATCCTGTGCTGCTAACAGTACCC-CCT--TCCTCCTGGGGCTCTCTCCTCTTCCTCTGAGCAGGTTCC--CGTACCTTCCCCAGGGAGAGCCGTGAGGCTCAGCTGGGCCTGTAGGGGCTGGTTCTGCTGGC
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7577294 157 +  58131712 AG----CTCTTCTAAAGGTTTCTTCCAACCCTTCAATCCTATGCTGCTGACAGTCCCC-CCT--TCCTCCTGGGG-TCTCTCCTCTTCCCCTGAGTGGTCTCC--TGTACCTTCTCCAGGGATAGCCATGAGGCTCAACTGGGCCTCTAGGTGTCGATTCTGCTGGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      116538 158 +   7069685 AG----CTGTTCTAAAGGTCTCTTCCAACTCCTTAATCCTGTGCTGCTAACAGTACCC-CCT--TCCTCCTGGGGCTCTCTCCTCTTCCTCTGAGCAGGTTCC--CGTACCTTCCCCAGGGAGAGCCGTGAGGCTCAGCTGGGCCTGTAGGGGCTGGTTCTGCTGGC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3036861 158 +   3749464 AG----CTGTTCTAAAGGTCTCTTCCAAATCCTCAATCCTGTGCTGCTCACAGTCCCC-CCT--TCCTCCTGGGGCTCTCTCCTCTTCCTCTGAGTGGTCTCC--CGTACCTTCACCAGGGAGAGCCATGAGGCGCAGCTGGGCCGTTAGCTGCTGATTCTGCTGGC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72454440 157 - 132174527 AG----CTGTTCTAAAGGTCTCTTCCAACGCCTCAATCCTGTGCTGCTAACAGTCCCC--CT--TCCTCTTGGGGCTCTCTCCTCTTCCTCTGAGTGGTTTCC--CATACCTTCCCCAGGAAGAGTCGTGAGGCCCAGCTGGTCCTGTGGCTGCTGGTTCTCCTGGG
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9387240 158 +  14477005 AG----CTATTCTAAAGGTCTCTTCCAGCTCCTCAATCCTACGCTGCTAACAGTCCCC-GAT--TCCTCCTAGGGCTCTCTCCTCTTCCTGTGAGCAGGTTCC--CGTACCTTCCCCAGGGAGAGCTATGAGGCTCAACTGGGCTCGTAGCTGCTGGTTATGCTGGC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30949323 132 +  31380117 AGCTGTCTGTCCTAGAGGTTCCCT----------------------------GTCCCTGCCT--TGCCCCC--GGCTCCCTCCTCACCATG-GAACAATCTCA--CTTACCCTTCCCAGGCTCGGCCATTAGGCTCAGCTGGGCCTGCAGCTGCTGGTTCTGCTGTC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5824720 156 -  61074082 -------TGTCCTACAGGTCCCGTCACA---CTTGATTCTGTGCTGCTCAAAGTCACC-CCTCCTCCTCCTCGGGCTCTGTCCTCTTCCCCTGGACACTCTCCTACTCACCTTCCCCAGGCATAGCCATGAGGCTCAGCTGGGCCTGGAGCTGCTGGTTCTGCTGGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            402493 152 -    584178 AG----CTGTCCTAAAGGTCTCACATAACTTCTCAATTCTGTGCTACCACAAGTCCCC---T--TCAAC----AGCCCTCTCCTCTCCCTCTGGACAGACCCA--CTTACCTTCCTCAGGCAAAGCCATCACACCCAACTGGGCCTGTAGCTGCTGGTTCTGCTGGT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1009079   0 -   1842816 C

a score=3291621.000000
s hg38.chr15_KI270851v1_alt   253821 427 +    263054 TGGCAGCTTCCAGGTGCTCCTAA-GGGGCCAGGA--AAG--A----GTGAGAAGGGATGGAGTTTGCCAGGTCGTCCCCCTCACGGCCCC-ATC-CTCCGCAGCTCCCTCC-CCTGGGTCTCCTGCAAC-TTTTGGCAGGCCATGTCAGCCACTGCTTTGCCCCAAGCTTCCTGCTGCTGCAGCTGGTTCATTAGCTGGGTCTGCTGCAGTCACTGCCTGTACAGCGCCTCCTTCTCACAGGTCAGCTGCTGATAGGCGGCCACCTGCTGCTGATAGGTGGCCACGTACTGCTGCAGGTGACCCAGGTAATGGTCTGGCTGCTGCTGCAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGTGTGAGGGCACGTGGTGGCTGGTTTCCAGATTCTGGGCCCATTAATAG-----GGTAGCGAGGGCAC-----------------------
s panTro5.chr15             72197528 427 -  83230942 TGGCCGCTTCCAGGTGCTCCTAA-GGGGCCAGGA--AAG--A----GTGAGAAGGGATGGAGTTTGCCAGGTCGTCCCCCTCACGGCCCC-GTC-CTCGGTAGCTCCCTCC-CCTGGGTCTCCTGCAAC-TTTTGGCAGGCCATCTCAGCCACTGCTTTGCCCCAAGCTTCCTGCTGCTGCAGCTGGTTCATTAGCTGGGTCTGTTGCAGTCACTGCCTGTACAGCGCCTCCTTCTCACAGGTCAGCTGCTGATAGGCGGCCACCTGCTGCTGATAGGTGGCCACGTACTGCTGCAGGTGACCCAGGTAATGGTCTGGCTGCTGCTGCAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGTGTGAGGGCATGTGGTGGCTGGCTTCCAGATTCTGGGCCCAGTAACAG-----GGTAGCGACAGCAC-----------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71434329 427 -  99763055 TGGCCGCTTCCAGGTGCTCCTAA-GGGGCCAGGA--AAG--A----GTGAGAAGGGATGGAGTTTGCCAGGTCGTCCCCCTCACAGCCCC-ATC-CTCGGCAGCTCCCTCC-CCTGGGTCTCCTGCAAC-TTTTGGCAGGCCATCTCGGCCACTGCTTTGCCCCAAGCTTCCTGCTGCTGCAGCTGGTCCATTAGCTGGGTCTGTTGCAGTCACTGCCTGTACAGCGCCTCCTTCTCACAGGTCAGCTGCTGATAGGCGGCCACCTGCTGCTGATAGGTGGCCACGTACTGCTGCAAGTGACCCAGGTAATGGTCTGGCTGCTGCTGCAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGTGTGAGGGCATGTGGTGGCTGGCTTCCAGATTCTGGGCCCAGTAACAG-----GGTAGCGACAGCAC-----------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       13602 432 -    281578 TGGCAGCTTCCAGGCGCTCCTAA-GGGGCCAGGA--AAG--A----GTGAGAAGGGATGGAGTTTACCAGGTCGTCCCCCTCACAGCCCC-ATC-CTCGGCAGCTCCCTCC-CATGGGTCTCCTGCAAC-TTTTGGCAGGCCATCTCGGCCACTGCTTTGCCCCAAGCTTCCTGCTGCTGCAGCTGGTTCATTAGCTGGGTCTGTTGCAGTCACTGCCTGTACAGCGCCTCCTTCTCACAGGTCAGCTGCTGATAGGCGGCCACCTGCTGCTGATAGGTGGCCACGGACTGCTGCAGGTGACCCAGGTAATGGTCTGGCTGCTGCTGCAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGTGTGAGGGCACGTGGTGGCTGGTTTCCAGATTCTGGGCCCATTAATAGGTAGCGGTAGCGAGGGCAC-----------------------
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8430131 427 + 169600520 tgGCAGCCTCCAGGTGCTCCTAA-GGGGCCAGGA--AAG--A----GTGAGAAGGCACTGAGTTTGCCAGGTCGTCCCCCTCATGGCCCC-GTC-TTCAGCAGCTCCCTCC-CCTGGGTCTCCTGTAAC-TTTTGGCGGGCCATCTCGGCCACCGCTTTGCCCCAAGCTTCCTGCTGCTGCAGTTGGTTCATTAGCTGGGTCTGCTGCAGTAACTGCCTGTGCAGCGCCTCCTTCTCAGAGGTCAGCTGCTGATAGGCGGCCACCTGCTGCTGATAGGTGGCCACGGACTGCTGCAGGTGACCCAGGTAATGGTCTGGCTGCTGCTGCAGACTCTGAGCCTTTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGTGTGAGGGCACGTGGCGACTGGCTTCCAGATTCTGGGCCCATTAATAG-----GGTAGCGAGGGCAC-----------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91229304 428 - 171882078 TGGAGGTTTCCAGGCGCTCCTAA-GGGGCCAAGA--AAG--G----GTGAGAAGGCACAGAGTTTGCCAGGTTGTCCCCCTTAGGGCCCC-AGC-CTCAGCAGCTCCCTCC-CCTGGGTCTCCTGCAACTTTTTTGTGGGCCAGGTTGGCCACCACTTTGCCCCAAGCTTCCTTGTGATGCAGCTGGTTCATTAGCTGGGTCTGCTGCAGTAACTGCCTGTGCAGCACCTCATTCTCAAAGGTCAGCTGCTGATAGGCGGCCACCTGCTGCTGATAGGTGGCCACATACTGCTGCAGGTGACCCAGGTGATGGTCTGGCTGCTGCTACAGACTCTGAGCCCCTTGGCTCTTCAGCTTCACCTGCAGGAATATGCTGGGTGTGAGGGCATGTGGTGGCTGGCTTCCAGATTCTGGGACCATTAACAG-----GGTAGCCAGGGAAA-----------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      410569 427 -   9617498 TGGAAGTTTCCAGGCGCTCCTAA-GGGGCCAAGA--AAG--G----GTGAGAAGGCACAGAGTTTGCCAGGTTGTCCCCCTTAGGGCCCC-AGC-CTCAGCAGCTCCCTCC-CCTGGGACTCCTGCAAC-TTTTTGTGGGCCAGGTTGACCACCACTTTGCCCCAAGCTTCCTTGTGATGCAGCTGGTTCATTAGCTGGGTCTGCTGCAGTAACTGCCTGTGCAGCACCTCATTCTCAAAGGTCAGCTGCTGATAGGCGGCCACCTGCTGCTGATAGGTGGCCACATACTGCTGCAGGTGACCCAGGTGATGGTCTGGCTGCTGCTACAGACTCTGAGCCCCTTGGCTCTTCAGCTTCACCTGCAGGAATATGCTGGGTGTGAGGGCATGTGGTGGCTGGCTTCCAGATTCTGGGACCATTAACAG-----GGTAGCCAGGGAAA-----------------------
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4963194 427 +  14009840 TGGAAGTTTCCAGGCACTCGTAA-GTAACCAAGA--AAG--G----GTGAGAGGGCACGGAGTTTGCCAGGTTGTCCCCCTTAGGGCCCC-GGC-CTCAGCAGCTCCCTCC-CCTGGGTCTCCTGCAAC-TTTTTGTGGGCCAGGTTGGCCACCACTTTGCCCCAAGCTTCCTGCTGATGCAGCTGGTTCATTAGCTGGGTCTGCTGCAGTAACTGCCTGTGCAGCGCCTCCTTCTCAAAGGTCAGCTGCTGATAGGAGGCCACCTGCTGCTGATAGGTGGCCACATACTGCTGCAGGTGACCCAGGTGATGGTCTGGCTGCTGCTACAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGTGTAAGGGCACGTGGTGGCTAGCTTCCAGATTCTGGGACCATTAACAG-----GGTAGCCAGGGAAA-----------------------
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7577451 405 +  58131712 TGGCTGCTTCTAGGTGCTCCTAAGGGAACGGAAA--ATG--A----GTGAGAAGGCACCAAGGTTGCCAGGTCGTCTCCCTCGGGCCCCT-CTC-CTCAGCAACTCCAGCT-CCTGGGTCCACTGCAG--GTTTGGTGGGCCATCTCAGCCACCGCTTTGCCCCGAGTTTCCTGCTGCTGCAGTTGGTCCATGAGCTGGGTCTGCAGCAGTAACTCCCTGTGCAGCGCCTCCTTCTCGGAGGTCA---------------------GCTGCTGATAGGTGACCACGTACTGCTGCGGGTGACCCAGGTACTAGTCTCACTGCTGC-GCACACTCTGAGACTCTTGGCTCTTCAGCTCCAGCTGCAGCAAGGCCCTGGCCATGAGGGCATGTGGTGGCTGGCTTCCAGATTCTGGGCCCATTAATAG-----GGTAGTGAGGGCAC-----------------------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      116696 427 +   7069685 TGGAAGTTTCCAGGCACTCGTAA-GGAGCCAAGA--AAG--G----GTGAGAGGGCACGGAGTTTGCCAGGTTGTCCCCCTTAGGGCCCC-GGC-CTCAGCAGCTCCCTCC-CCTGGGTCTCCTGCAAC-TTTTTGTGGGCCAGGTTGGCCACCACTTTGCCCCAAGCTTCCTGCTGATGCAGCTGGTTCGTTAGCTGGGTCTGCTGCAGTAACTGCCTGTGCAGCGCCTCCTTCTCAAAGGTCAGCTGCTGATAGGCGGACACCTGCTGCTGATAGGTGGCCACATACTGCTGCAGGTGACCCAGGTGATGGTCTGGCTGCTGCTACAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGTGTGAGGGCACGTGGTGGCTGGCTTCCAGATTCTGGGACCATTAACAG-----GGTAGCCAGGGAAA-----------------------
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3037019 422 +   3749464 TGGCAGCTTCCAGGTGTTCCTAA-GGGGCCAGGA--AGG--A----GTGAAAAGGCACAGAGTTTGCCAGGTCGTCCCCCTCACGGCCCT-GTC-CTCAGCAGCTCCTTCC-CCTGGGTCTCCTGCAAC-TTTTGGCAGGCCATCTCCGCCACCGCTTTGCCCCAAGTTTCCGGCTGCTGCAGCTGGTTCATTAGCTGGGTCTGCTGCAGTAACTCCCTGTGCAGCGCCTCCTTCTCAGAGGTCAGCTGCTGATAGGCGGCCACCTGCTGCTGATAGGTGGCCACGTACTGCTGCAGGTGACCCAGGTAACAGTCTGGCTGCTGCTGCAGACTCTGAGCCTGTTGGCTCTTCAGCTCCAC-----GGAAGACCCTGGGTGTGAGGGCACATGGTGGCTGGCTTCCAGATTCTGGGCCCATTAATAG-----GGTAGCGAGGGCAC-----------------------
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72454597 400 - 132174527 TGGCAGCTTCCAGGTGCTCCTAA-GGGGCCAGGA--AAGGAA----GTGAGAAGACACAGAGGTTGCCACGTCATTCCCCTCGGGGCCCC-ATC-CTCAGAAACTCCCTCC-CCTGGGTCTCCTGCAAC-TTTTGGCGGGCCATCTCGGCTACTGCTTTGCCCCGAGCTTCCTGCTGCCGCAGCTGGTTCATGAGCTGGGTCTGTAGCAGTAACTGCCTGGGCAGTGCCTCCTTCTCAGAGGTCAGCTGCTGATAGGTGGCCACATACTGCTG----------------------------CCCGGGTACTGGTCTCACTGCTGCTGCAGACTCTGAGCCTCTTGGCTTTTCAGCTCTACCTGCAGGAAGACCCTGGGTGTGACAGTGTGTGGTGGCTGGCTCCCAGATT-TGGGTCCATTCATAG-----GGTAGGCAGGGCAC-----------------------
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9387398 428 +  14477005 TGACAGCTTCCAGGCGCTCCTAA-TGGGCCAGGA--AAGAGA----GTGAGAAGGCACAGAGGTTGCCAGGTCG-TACCCTCAGGGCCCT-GCC-CTCAGCAACTCCCTCA-CCTGGGTTTCCTGCAAC-TCTTGGCTGGCCATGTCAGCCACCGCTTTGCCCTGAGCTTCCTGCTGCTGCAGCTGGTCCACGAGCTGGGTTTGCAGCAGCAACTGATTGTGCAGCGCCTCCTTCTCAGAGGTCAGCTGCTGATAGGCAGCCACCTGCTGCTGATAGGCGGCCACGTACTGCTGCAGGTGTCCCAGGTACTGGTCTCGCTGCTGCTGCAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCTGCAGGAAGATCCTGGGTGTGAGGGCAGGTGGTGGCTGACTTCCAGATTCTGGGCCCATAAATAG-----GGTAGCAAGGGCAC-----------------------
i aotNan1.NW_018502759v1    C 0 I 10
s otoGar3.GL873533          30949455 424 +  31380117 TGGCAGCTTCTAGGCGCTCCTAA-GTGGCCACAA--AAG--AGGATGTGACAGCCTCCTGCAGCTGTCACATCCTCCCACTCAGGGGCCTAGCC-CTTAGCAAATCCCTCA-CCTGGGTCTCCTGCAAT-TCGTGGAGGGCCACCTCAGCTGCCACTGCACCCTGAGCTTTCTCTTGTTGCAGCTGCTCCATGGCCTGGGTCTGCTGTAGGAGCTCCCTGTGCAGCGACTCCTTCTCTGACATCAGTTGCTGATAGGTGTTTGCGTGCTGCTGATAGGCAGCCACATACTGATGCAGGTAAATCAGATACTGATCTCTCTCCTGCTGTAGACTCTTCGCCTCTTCATTCTTCAGTTCCACCTGCAGGAAGACCCTGGACGTGAGGGAAGGTGGTAGCCTACTTCCAGACTCTAAGCCC-------------AGTAGTGGGGGCAC-----------------------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5824876 372 -  61074082 TGGCAGATTCCAGGCGTCCCTGA-GGGGCCAGGA--AAG--A----GTGAGAAGGGATGCGGGTAG-CAGGCCCTC-CCCTCGGGGCCCA-GTA-CTCG--AACTCCCTTCACCTGGGTCTCCTGTAAC-TCTTGGAGGGCTTTCTCGGCCGCCACCTTGCCCTGAACTTCCTCATGCTGCAGCCGGTCCATGAGCTGAGTCTGCAGCAGCACCTGCTTGTGCAGCAGCTCCTTGTCGGAAGCCA---------------------GCTGCTGGTAGGCGGCCATATACTGCTGCAGGTGGCTCATGTACTGGTCCCGCTGCTGCTGTAGATTCTGAGCCTCCTGGCTCTTCAGCTCCACCTGTGGGAAGACCCAGGGACTAA-----------GGCTGGCACCC--GTGCTGAG---------AG-----GAAAG--------------------------------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            402645 450 -    584178 TGGCAGCTTCCAGGCGCTCCTAA-GAGGCCAGGATTGAG--A----ATGAGAAAGGGCACCCGTTACTGGGTCCTCCTACTTAGGGACCC-AGCACTCAGCAACTCCCTTA-CCTGGGTCTCCTGTAAT-TCCTGGCGAATCATCTCGGCCATGGCCTTGCCCTGAACTTCCTCATGCTGCAGCCGGTCCATGAGCTGAGTTTGCAGCAGTAACTGCTTGTGCAGCATCTCCTTCTCGGTGGCCAGCTGCTGATAGGCACCCATGTGCTGCTGATAGGTGGCCACATACTGCTGCAGGTGGCTCAGGTACTGGTCCCGCTGCTCCTGCAGACCCTGAGCCTCTTTGCTCTTTAGCTCCACCTGCGGGAAGACCCTGGAAGTGAGGGTGAGCCGTGGACTGCTTCCAGACTCTGCGCCC--CGAGAG-----GGAAG-GGGGATACAGAAGTCTGCTCAGTGCAGAAAT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1009079   0 -   1842816 C

a score=91615.000000
s hg38.chr15_KI270851v1_alt   254248 16 +    263054 TGTGGGGCTCTGTCAG
s panTro5.chr15             72197955 16 -  83230942 TGTGGGGCTCTGTCGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71434756 16 -  99763055 TGTGGGGCTCTGTCGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14034 16 -    281578 TGTGGGGCTCTGTCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8430558 16 + 169600520 TGTGGGGCTCTGTCGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91229732 16 - 171882078 TGTGGggctctgtcac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      410996 16 -   9617498 TGTGGggctctgtcac
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4963621 16 +  14009840 TGTGGGGCTCTGTCAT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7577856 16 +  58131712 TGTGGGGCTCTGTCAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      117123 16 +   7069685 TGTGGGGCTCTGTCAT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3037441 16 +   3749464 TGTGGGGCTCTGTCGC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72454997 13 - 132174527 TATGGGGCTGTGA---
i calJac3.chr10             C 0 C 0
s otoGar3.GL873533          30949879  7 +  31380117 TGTGGGG---------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5825248 16 -  61074082 CGGGAGGCTCTGCGGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            403095 16 -    584178 GGTAAGGCTCTGCTGC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9387826 10 +  14477005 I
e cebCap1.NW_016107745v1     1009079  0 -   1842816 C

a score=95337.000000
s hg38.chr15_KI270851v1_alt   254264 16 +    263054 CTGCCCAGGCCCCTGT-
s panTro5.chr15             72197971 16 -  83230942 CTGCCCAGGCCCCTGT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71434772 16 -  99763055 CTGCCCAGGCCCCTGT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14050 16 -    281578 CTACCCAGGCCCCTGT-
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8430574 16 + 169600520 CTGCCCAGGCCCCTGG-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91229748 15 - 171882078 ctgcccagg-ccctgg-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      411012 15 -   9617498 ctgcccagg-ccctgg-
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4963637 16 +  14009840 CTGCCCAGGTCCCTGG-
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7577872 16 +  58131712 CTGCCTGGGCCCCTGG-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      117139 16 +   7069685 CTGCCCAGGTCCCTGG-
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3037457 16 +   3749464 CTGCCCAGGCCCCTGG-
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72455010  5 - 132174527 -----------CCAGG-
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1009079 16 -   1842816 CTGCCCAGGTGCCTGG-
i cebCap1.NW_016107745v1    C 0 C 0
s canFam3.chr9               5825264 16 -  61074082 CCGCCCAGGCCCCTGG-
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958            403111 16 -    584178 CTGCCCAGG-CCCTGGC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9387826 10 +  14477005 I
e otoGar3.GL873533          30949886  0 +  31380117 C

a score=600569.000000
s hg38.chr15_KI270851v1_alt   254280 75 +    263054 CCCCTTACTCCAGG-CCTAAGTGACTGCCTCCCTTTCCTAGAACCCCATGCCTCCTTC-CCCAGCCTCAAATCTCAT
s panTro5.chr15             72197987 75 -  83230942 CCCCTTACTCCAGG-CCTAAGTGACTGCCTCCCTTTCCTAGAACCCCATGCCTCCTTC-CCCAGCCTCAAATCTCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71434788 75 -  99763055 CCCCTTACTCCAGG-CCTAAGTGACTGCCTCCCTTTCCTAGAACCCCATGCCTCCTTC-CCCAGCCTCAAATCTCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14066 75 -    281578 CCCCTTACTCCAGG-CCTAAGTGACTGCCTCCCTTTCCTAGAACCCCATGCCTCCTTC-CCCAGCCTCAAATCTCAT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8430590 75 + 169600520 CCCCTTACTCCAGG-CCTAAGTGACTGTCTCCCTTTCCTAGAACCCCATGCTTCCTTC-CTCAGCCTCAAATCTCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91229763 75 - 171882078 ccccttgctctggg-cctAAGTGACTGCCTCCTTTTCCTAGAACCCCATGCCTCCTTC-CCCAGCCTCAAATCGCAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      411027 75 -   9617498 ccccttgctctggg-cctAAGTGACTGCCTCCTTTTCCTAGAACCCCATGCCTCCTTC-CCCAGCCTCAAATCGCAT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4963653 75 +  14009840 TCCCTTGCTCTGGG-CCTAAATGACTGACTCCTTTTCCTAGAACCCCATGCCTCCTTC-CCCAGCCTCAAATCGCAT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7577888 74 +  58131712 CCCCTTGCTCCAGG-CCTAAGAAACTTCCTCCCTTGCCTAGTACCCCATGCCTTCTT--CCCAGCCTCAAATATCAT
i chlSab2.chr26             C 0 I 116
s manLeu1.NW_012109919v1      117155 75 +   7069685 TCCCTTGCTCTGGG-CCTAAATGACTGCCTCCTTTTCCTAGAACCCCATGCCTCCTTC-CCCAGCCTCAAATCGCAT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3037473 75 +   3749464 CTCCTTACTCCAGG-CCTAAGTGACTGTCCCCCTTTCCTAGAACCCCATGCCTCCTTC-CCCAGCCTCAAATCTCAT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72455015 75 - 132174527 CCCCTGGCTCCAGG-CCCAAGAGACTGCCTCCGTTGCCTAGAATCCCGTCCCTCCTTC-CCCAGCCTCAAATCTCAT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1009095 74 -   1842816 CCCCTGGCTCCA-G-CCTAAGAGACTGCCTCCCTTGCCTAGAACCCCATGCCTCCTTC-CCCAGCCTCAAATCTCAT
i cebCap1.NW_016107745v1    C 0 I 108
s aotNan1.NW_018502759v1     9387836 75 +  14477005 CCCCTTGCTCCAGG-CCTAAATGACTGCCTACCTTGCTTAGAGCCTCATGCCTCCTTC-CCCATCCTCAAATCTTAC
i aotNan1.NW_018502759v1    I 10 C 0
s otoGar3.GL873533          30949886 73 +  31380117 ---CTTGCTCCAGG-CCTGACTGGCCATCTCCCTTGCACAGAGCCCTGTTCCTGCCTCACTCAACCTCAGACCCCAT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5825281 76 -  61074082 TTCCTCGCTCTAGGACTTCAGTGACTGCCCCTATATCCAGGGACCCACACTTCCCTTA-CCCTTCCTCATGCCTCAT
i canFam3.chr9              I 1 I 1
s dasNov3.JH564958            403127 47 -    584178 CTCCTTGCATAAGG-CCCTAG---------------CCTCACACCTCACAACTCTTTT-C-----------TCTC--
i dasNov3.JH564958          C 0 C 0

a score=26373.000000
s hg38.chr15_KI270851v1_alt   254355 5 +    263054 ACCCT
s panTro5.chr15             72198062 5 -  83230942 ACCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71434863 5 -  99763055 ACCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14141 5 -    281578 ACCCT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8430665 5 + 169600520 ACCCT
i rheMac8.chr7              C 0 I 451
s macFas5.chr7              91229838 5 - 171882078 ACTCT
i macFas5.chr7              C 0 I 100
s macNem1.NW_012017799v1      411102 5 -   9617498 ACTCT
i macNem1.NW_012017799v1    C 0 I 100
s cerAty1.NW_012001627v1     4963728 5 +  14009840 GCCCT
i cerAty1.NW_012001627v1    C 0 I 100
s manLeu1.NW_012109919v1      117230 5 +   7069685 GCCCT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3037548 5 +   3749464 ACCCT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72455090 5 - 132174527 GTCCT
i calJac3.chr10             C 0 I 89
s aotNan1.NW_018502759v1     9387911 5 +  14477005 ACCCT
i aotNan1.NW_018502759v1    C 0 I 228
s otoGar3.GL873533          30949959 5 +  31380117 AACCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5825358 4 -  61074082 ACCA-
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958            403174 5 -    584178 ATCCT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1009169 108 -   1842816 I
e chlSab2.chr26              7577962 116 +  58131712 I

a score=7129.000000
s hg38.chr15_KI270851v1_alt   254360 2 +    263054 CT
s panTro5.chr15             72198067 2 -  83230942 CT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71434868 2 -  99763055 CT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14146 2 -    281578 CT
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              91229943 1 - 171882078 -t
i macFas5.chr7              I 100 I 1
s macNem1.NW_012017799v1      411207 1 -   9617498 -t
i macNem1.NW_012017799v1    I 100 I 1
s cerAty1.NW_012001627v1     4963833 1 +  14009840 -t
i cerAty1.NW_012001627v1    I 100 I 1
s manLeu1.NW_012109919v1      117235 2 +   7069685 CT
i manLeu1.NW_012109919v1    C 0 I 100
s colAng1.NW_012115677v1     3037553 2 +   3749464 CT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72455184 2 - 132174527 ct
i calJac3.chr10             I 89 I 12
s otoGar3.GL873533          30949964 2 +  31380117 TT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5825362 2 -  61074082 CC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            403179 2 -    584178 TT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9387916 228 +  14477005 I
e cebCap1.NW_016107745v1     1009169 108 -   1842816 I
e rheMac8.chr7               8430670 451 + 169600520 I
e chlSab2.chr26              7577962 116 +  58131712 I

a score=24110.000000
s hg38.chr15_KI270851v1_alt   254362 5 +    263054 tctca--
s panTro5.chr15             72198069 5 -  83230942 tctca--
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71434870 5 -  99763055 tctca--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14148 5 -    281578 tctca--
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              91229945 5 - 171882078 tctca--
i macFas5.chr7              I 1 C 0
s macNem1.NW_012017799v1      411209 5 -   9617498 tctca--
i macNem1.NW_012017799v1    I 1 C 0
s cerAty1.NW_012001627v1     4963835 5 +  14009840 tctca--
i cerAty1.NW_012001627v1    I 1 C 0
s chlSab2.chr26              7578078 5 +  58131712 tctca--
i chlSab2.chr26             I 116 C 0
s manLeu1.NW_012109919v1      117337 5 +   7069685 tctca--
i manLeu1.NW_012109919v1    I 100 C 0
s colAng1.NW_012115677v1     3037555 5 +   3749464 TCTCA--
i colAng1.NW_012115677v1    C 0 I 448
s calJac3.chr10             72455198 5 - 132174527 tcatg--
i calJac3.chr10             I 12 C 0
s cebCap1.NW_016107745v1     1009277 5 -   1842816 tctca--
i cebCap1.NW_016107745v1    I 108 C 0
s otoGar3.GL873533          30949966 5 +  31380117 TTTCA--
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5825364 5 -  61074082 TTCTA--
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            403181 5 -    584178 --TAACT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9387916 228 +  14477005 I
e rheMac8.chr7               8430670 451 + 169600520 I

a score=22061.000000
s hg38.chr15_KI270851v1_alt   254367 3 +    263054 ttt
s panTro5.chr15             72198074 3 -  83230942 ttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71434875 3 -  99763055 ttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14153 3 -    281578 ttt
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              91229950 3 - 171882078 ttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      411214 3 -   9617498 ttt
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4963840 3 +  14009840 ttt
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7578083 3 +  58131712 ttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      117342 3 +   7069685 ttt
i manLeu1.NW_012109919v1    C 0 C 0
s calJac3.chr10             72455203 3 - 132174527 ttt
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1009282 3 -   1842816 ttt
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30949971 3 +  31380117 TAt
i otoGar3.GL873533          C 0 I 440
s canFam3.chr9               5825369 3 -  61074082 TTT
i canFam3.chr9              C 0 I 400
s dasNov3.JH564958            403186 3 -    584178 TTT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9387916 228 +  14477005 I
e colAng1.NW_012115677v1     3037560 448 +   3749464 I
e rheMac8.chr7               8430670 451 + 169600520 I

a score=200212.000000
s hg38.chr15_KI270851v1_alt   254370 47 +    263054 -------------------------------------aatcctcagca---------cctctgtaagg-aaaatgctaacttccctttgaagtt
s panTro5.chr15             72198077 47 -  83230942 -------------------------------------actcctcagcg---------cctctgtaagg-aaaatgctaacttccctttgaagtt
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71434878 47 -  99763055 -------------------------------------actcctcagcg---------cctctgtaagg-aaaatgctaacttccctttgaagtt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14156 47 -    281578 -------------------------------------aatcctcagca---------cctctgtaagg-aaaatgctaacttccctttgaagtt
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              91229953 47 - 171882078 -------------------------------------aatcctcaact---------cctctgtaagg-aaaatgataacttccttttgaagtt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      411217 47 -   9617498 -------------------------------------aatcctcaact---------cctctgtaagg-aaaatgataacttccttttgaagtt
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4963843 47 +  14009840 -------------------------------------aatcctcagca---------cctctgtaagg-aaaatactaacttccttttgaagtt
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7578086 46 +  58131712 -------------------------------------aatcctcagca---------cctctgcaagg--aaatgctaacttccttttgaagtt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      117345 47 +   7069685 -------------------------------------aatcctcagca---------cctctgtaagg-aaaatactaacttccttttgaagtt
i manLeu1.NW_012109919v1    C 0 C 0
s calJac3.chr10             72455206 47 - 132174527 -------------------------------------aatcctcagca---------tctccacaagg-aaaacactaacttccttttgaaatg
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1009285 47 -   1842816 -------------------------------------aatcctcagca---------cccacgcaagg-aaaatgctaacttactttggaagtt
i cebCap1.NW_016107745v1    C 0 C 0
s dasNov3.JH564958            403189 94 -    584178 AGGCCAGAGACTGGTGGAAAAGCAGAACCAACACCATATGCCTTGACATGCATTAATCCTCTGTGAGGAAAAATGCTAATCTCCTTGTCAAGTT
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9               5825372 400 -  61074082 I
e aotNan1.NW_018502759v1     9387916 228 +  14477005 I
e otoGar3.GL873533          30949974 440 +  31380117 I
e colAng1.NW_012115677v1     3037560 448 +   3749464 I
e rheMac8.chr7               8430670 451 + 169600520 I

a score=714349.000000
s hg38.chr15_KI270851v1_alt   254417 132 +    263054 aaagaaacagagacttagagatgcaaagtacttgAATGGTGACCAGTGGAACCGAGG-CTGGAATCC-AGTTTTAATCTAAGGAGTCt------tt------------------t------tgttttgttttcagacaagagtgtcactctgtggcccaggctg
s panTro5.chr15             72198124 132 -  83230942 aaagaaacagagacttagagatgcaaagtacttgAATGGTGACCAGTGGAACCGAGG-CTGGAATCC-AGTTTTAATCTAAGGAGACt------tt------------------t------tgttttgttttgagacaagagtgtcactctgtggcccaggcta
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71434925 132 -  99763055 aaagaaacagagacttagagatgcaaagtacttgAATGGTGACCAGTGGAACCGAGG-CTGGAATCC-AGTTTTAATCTAAGGAGACt------tt------------------t------tgttttgttttgagacaagagtgtcactctgtggcccaggcta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14203 132 -    281578 aaagaaacagagacttagagatgcaaagtacttgAATGGTGACCAGTGGAACCGAGG-CTGGAATCC-AGTTTTAATCTAAGGAGTCt------tt------------------t------tgttttgttttcagacaagagtgtcactctgtggcccaggctg
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8431121 131 + 169600520 aaagaaacagagacttagagatgcaaagtacttgaatggtgaccagtggaaccgagg-ttggaatcc-agTTTCAATCTAAGGAGCAt------tt------------------t------tgttttgttttgagac-agagtgtcactctgtggcccaagctg
i rheMac8.chr7              I 451 C 0
s macFas5.chr7              91230000 126 - 171882078 aaacaaacagagacttagagatgcaaagtatttgAATGGTGACCAGTGGAACCAAGG-CTGGAATGC-GGTTTTAATCTAAGAAGCGt-----------------------------------ttttgttttcagac-agagtgtcactctgtggcccaggctg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      411264 126 -   9617498 aaacaaacagagacctagagatgcaaagtatttgAATGGTGACCAGTGGAACCGAGG-CTGGAATGC-GGTTTTAATCTAAGGAGCGt-----------------------------------ttttgttttgagac-agagtgtcactctgtggcccaggctg
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4963890 129 +  14009840 aaacaa--agagacttagagatgcaaagtacttgAATGGTGACCTGTGGAACTGAGG-CTGGAATCC-AGTTTTAATCTAAGGAGCAt------tt------------------t------tgttttgtttggagac-agagtgtcactctctgacccaggctg
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7578132 137 +  58131712 aaagaaacagagacttagagatggaaagtacttgaatggtgaccagagaaaccaagg-ctcgaatcc-agtttgaatctaagGAGGGttttttgtt------------------t------tgttttgttttgggac-agagtgtcactctgtggctgaggctg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      117392 131 +   7069685 aaacaaacagagacttagagatgcaaagtacttgAATGGTGACCTGTGGAACTGAGG-CTGGAATCC-AGTTTTAATCTAAGGAGCAt------tt------------------t------tgttttgtttggagac-agagtgtcactctgtgacccaggctg
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3038008 132 +   3749464 aaagaaaCAGAGACTTAGAGATGCAAAGTACTGGAATGGTGACCAGTGGAACCGAGGTTTGGAATCC-AGTTTTAATCTAAGGAGCCt------tt------------------t------tgttttgttttgagac-agagtgtcactctgtggcccaggctg
i colAng1.NW_012115677v1    I 448 C 0
s calJac3.chr10             72455253 131 - 132174527 aaagaaacagagacttagagaTGCAAAGAAGGTCAGTGGTGACCAGCGGAACCAACG-CCGGAATCC-AGCTTGAATCTAAGAAGCCT------Ct------------------tttg---tgttttgttttgagac-agagtatcactctgga---cactctg
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1009332 155 -   1842816 aaagaaacagagactgagagatgcaaagtAGTTGAATGGTGACCAGTGGAATCAAGG-CCGGAATCC-AATTTGGATCTAAGGAGACT------TTCAttttgttttgctttgatttgatttgttctgttttgagac-agagtgtcattctgtggcccaggctg
i cebCap1.NW_016107745v1    C 0 C 0
s dasNov3.JH564958            403283  77 -    584178 AAAGAAAATGATGCTTAGAGATG---------TGAATAGTGACCAGTGCAGCCAAAA-GGAGAATTCAAGTTGGAATCCAAGGAGCC-----------------------------------------------------------------------------
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9               5825372 400 -  61074082 I
e aotNan1.NW_018502759v1     9387916 228 +  14477005 I
e otoGar3.GL873533          30949974 440 +  31380117 I

a score=535284.000000
s hg38.chr15_KI270851v1_alt   254549 81 +    263054 gagtgcagtggtgcaatctcagctcactgcaacctccacctcctgggttgaagcaattctcgtgcctcagcctcccgagta
s panTro5.chr15             72198256 81 -  83230942 gagtgcagtggtgcaatctcagctcactgcaacctccacctcctgggctcaagcgattctcatgcctcagcctccagagta
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71435057 81 -  99763055 gagtgcagtggtgcaatctcagctcactgcaacctccacctcctgggctcaagcgattctcatgcctcagcctccagagta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14335 81 -    281578 gagtgcagtggtgcaacctcagctcactgcaacctccacctcctgggttgaagcaattctcatgcctcagcctcccgagta
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8431252 81 + 169600520 gagtgcagtggtgcaatctcagctcattgcaacctccatctcctgggctcaggcgattctcatgcctcagcctcctgagta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91230126 81 - 171882078 gcatggagtggtgcaatctcagcttgctgcaatctccacctcctgggctcaatcgattctcatgcctcagcctcctgagta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      411390 81 -   9617498 gcatggagtggtgcaatctcagcttgctgcaatctccacctcctgggctcaatcgattctcatgcctcagcctcctgagta
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4964019 81 +  14009840 gagtgcagtggtgcaatctcagctcactgcaacctccacctcctgggctaaagcgattctcatgcctcagcttcctgagta
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7578269 81 +  58131712 gagtgcagtggtgcaatcttagctcactgcaacctccacctcccatgctcaagtgattctcatgcctcagcctcctgagta
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      117523 81 +   7069685 gagtgcagtggtgcaatctcagctcactgcaacctccacctcctgagctaaagcgattctcatgcctcagcttcctgagta
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3038140 81 +   3749464 gagtgcagtggtgcaatctcagctcattgcaacctccacctcctgggctcaggcgattcccatgcctcagcctcctgagta
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72455384 80 - 132174527 gagggcagtggtgcaatctcagctcactgcaaccttctcctcctgggctcaagcgat-tttgtgcctcagcctactgagta
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1009487 81 -   1842816 gaaagtcgtggtgcaaactcagctcaccgcaacctccagctcccgggctcaagcgatgctcatgcctcagccccctgagta
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30950414 81 +  31380117 gagtgcaatggctcaaccatagctcacttcaacctcaaactcctgggctcaagtgaacctccagcctcagcctcctgagta
i otoGar3.GL873533          I 440 C 0
s dasNov3.JH564958            403360 20 -    584178 ----------------TCCCATCCTATCACTATCTC---------------------------------------------
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9               5825372 400 -  61074082 I
e aotNan1.NW_018502759v1     9387916 228 +  14477005 I

a score=139279.000000
s hg38.chr15_KI270851v1_alt   254630 24 +    263054 ggtggaattacagtcatgtgccac
s panTro5.chr15             72198337 24 -  83230942 ggtggaattacaggcatgcgccac
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71435138 24 -  99763055 ggtggaattacaggcatgcgccac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14416 24 -    281578 ggtggaattacaggcatgcgccac
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8431333 24 + 169600520 ggtgggattacaggcatgctccac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91230207 24 - 171882078 ggtgggattacaggcatgtgccac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      411471 24 -   9617498 ggtgggattacaggcatgtgccac
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4964100 24 +  14009840 ggtgggattacaggcatgtaccac
i cerAty1.NW_012001627v1    C 0 M 450
s chlSab2.chr26              7578350 24 +  58131712 gccgggattacaagcatgcgccac
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      117604 24 +   7069685 ggtgggattacaggcatgtaccac
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3038221 24 +   3749464 ggtgggattacaggcatgctccac
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1     1009568 24 -   1842816 gctgggattactggtgtgcaccac
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30950495 24 +  31380117 gctgggactacagtcatgggccac
i otoGar3.GL873533          C 0 C 0
e dasNov3.JH564958            403380  0 -    584178 C
e canFam3.chr9               5825372 400 -  61074082 I
e aotNan1.NW_018502759v1     9387916 228 +  14477005 I
e calJac3.chr10             72455464  0 - 132174527 C

a score=382298.000000
s hg38.chr15_KI270851v1_alt   254654 115 +    263054 aatgtcctgc----taattttttt---------------ttttttttttttttgtaattttagt-agagatgaggttttaccacattggccaggctgatctcaaactcccgacctcaagtgattctcctgcctca
s panTro5.chr15             72198361 113 -  83230942 aatgccctgc----taa--ttttt---------------attttattttttttgtaattttagt-agacttgaggttttaccacgttggccaggctgatctcaaactcccgacctcaagtgattctcctgcctca
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71435162 112 -  99763055 aatgccctgc----taa---tttt---------------attttattttttttgtaattttagt-agacatgaggttttaccacgttggccaggctgatctcaaactcccgacctcaagtgattctcctgcctca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14440 115 -    281578 aatgccctgc----taattttttt---------------ttttttttttttttttaattttagc-agagatgaggttttaccacattggccaggctgatctcaaactcccgacctcaagcgattctcctgcctca
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8431357 110 + 169600520 catgtccagc----taatgttttt--------------------tttttttttgtaattttagt-agagatgagattttaccatgttggccaggctgatctcaaactcccgacctcaagagattctcctgcctca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91230231 114 - 171882078 catgcctggctttttttttttttt--------------------tttttttttgtaattttgat-agagatgaggttttaccatgttgcccaggctgatctcaaactcccgacctcaagtgattctcctgcctca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      411495 105 -   9617498 catgcctggc------tttttttt--------------------tttttttttgtaattttgat-agagatgaggttttaccatgttg-gcaggctgatctcaaactcccgacctcaagtgatt-tccta-ctca
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7578374 106 +  58131712 catgcctggc----taattttttg------------------------ttgttgtaattttagt-agagatgaggtttcgccatgttggccaggctgttctcaaactcctgacctcaagtgtttctcctgcctta
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      117628 131 +   7069685 catgcctggc----taattttttgtgtgtgtgtaatttttttttttttttttggtaattgtaataagagatgaggttttaccatgttggccaggctgatctcaaactaccgacatccagtgattctcctgcctca
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3038245 109 +   3749464 catgtccagc----taattttttt---------------------ttttttttgtaattttagt-agagatgaggttttaccatgttggccaggctgatctcaaactcccaacctcaagagattctcctgcctca
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1     1009592 112 -   1842816 cacgcccagc-------tttgttg---------------tggtggtagtggttgtaattttagt-agagatgaggtttcgccatgttggccaggctgatttcaaactcctgatcttaagtgattctcctgcctca
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30950519  99 +  31380117 cacggctggc----taatttttca-------------------------------aatttttgt-agagattatatcttgctacattgcccatgctgttcttaaattcctagcttcaagcaatcgtcctgtctca
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958            403380  28 -    584178 ---------------------------------------------------------------------------TTTCCCTATAAT--------TGGGCTCAA------------------------TGCCTCA
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9               5825372 400 -  61074082 I
e aotNan1.NW_018502759v1     9387916 228 +  14477005 I
e cerAty1.NW_012001627v1     4964124 450 +  14009840 M
e calJac3.chr10             72455464   0 - 132174527 C

a score=69090.000000
s hg38.chr15_KI270851v1_alt   254769 12 +    263054 gcctcccaaagt
s panTro5.chr15             72198474 12 -  83230942 gcctcccaaagt
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71435274 12 -  99763055 gcctcccaaagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14555 12 -    281578 gcctcccaaagt
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8431467 12 + 169600520 gcctcccaaagt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91230345 12 - 171882078 gcctcccaaagt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      411600 11 -   9617498 g-ctcccaaagt
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7578480 12 +  58131712 gcctcccaaagt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      117759 12 +   7069685 gcctcccaaagt
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3038354 12 +   3749464 gcctcccaaagt
i colAng1.NW_012115677v1    C 0 C 0
s cebCap1.NW_016107745v1     1009704 12 -   1842816 gcctcccaaagt
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30950618 12 +  31380117 gtctcccaaagt
i otoGar3.GL873533          C 0 C 0
e dasNov3.JH564958            403408  0 -    584178 C
e canFam3.chr9               5825372 400 -  61074082 I
e aotNan1.NW_018502759v1     9387916 228 +  14477005 I
e cerAty1.NW_012001627v1     4964124 450 +  14009840 M
e calJac3.chr10             72455464  0 - 132174527 C

a score=222404.000000
s hg38.chr15_KI270851v1_alt   254781  52 +    263054 gctgggattat-aggcatga-gccactgcacctggc---------------------------------------------------------ATAAGG-AGCCTG------TT-ATAC
s panTro5.chr15             72198486  52 -  83230942 gctgggattat-aggcatga-gccactgcagctggc---------------------------------------------------------ATAAGG-AGCCTG------TT-ATAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71435286  52 -  99763055 gctgggattat-aggcatga-gccactgcagctggc---------------------------------------------------------ATAAGG-AGCCTG------TT-ATAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14567  52 -    281578 gctgggattat-aggcatga-gccactgcacctggT---------------------------------------------------------ATAAGG-AGCCTG------TT-ATAG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8431479  52 + 169600520 gctgggattat-aggcgtga-gccaccgtgcctggc---------------------------------------------------------ATAAGG-AGCCTC------TT-ATCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91230357  52 - 171882078 gctgggattac-aggcatga-gccaccgtgcctggA---------------------------------------------------------ATAAGG-AGCCTC------TT-ATAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      411611  56 -   9617498 gctgggattacgaggcgtgaggccaccgtgcctggA---------------------------------------------------------ATAAGGAAGCCTC------TTCATAC
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7578492  52 +  58131712 gctgggattac-aggcatga-gctaccacaccgggc---------------------------------------------------------ATAAGG-AACCTC------TT-ATAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      117771  51 +   7069685 gctgggattac-aggcgtga-gccaccgtgcctggA---------------------------------------------------------AT-AGG-AGCCTC------AT-ATAC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3038366  52 +   3749464 ggtgggattat-aggcctga-gccaccatgcctggc---------------------------------------------------------ATAAGG-AGCCTC------TT-ATAC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72455464  52 - 132174527 gctgggattac-aggcatgt-gccaccatgcctagc---------------------------------------------------------ATAAGG-AGCCTC------TT-ACAC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1009716  52 -   1842816 gctcggattac-aggggtga-gccactgcacccagc---------------------------------------------------------ATAAAG-AGCCTC------TC-ATAC
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30950630 115 +  31380117 gctgggatgac-aggggtaa-gccactgtggccagccAGATGTTAAGTATTTGAAAACAACCAGTGGAGCCGAGACCAGAATCCAGTCTAAATCCAAGG-ATCCTCACTTAATC-ATAC
i otoGar3.GL873533          C 0 C 0
e dasNov3.JH564958            403408   0 -    584178 C
e canFam3.chr9               5825372 400 -  61074082 I
e aotNan1.NW_018502759v1     9387916 228 +  14477005 I
e cerAty1.NW_012001627v1     4964124 450 +  14009840 M

a score=29449.000000
s hg38.chr15_KI270851v1_alt   254833 5 +    263054 CACTG
s panTro5.chr15             72198538 5 -  83230942 CACTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71435338 5 -  99763055 CACTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14619 5 -    281578 CACTG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8431531 5 + 169600520 CACTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91230409 5 - 171882078 CACTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      411667 5 -   9617498 CACTG
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7578544 3 +  58131712 CA--G
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      117822 5 +   7069685 CACTG
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3038418 5 +   3749464 CACTG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72455516 5 - 132174527 CACTG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1009768 5 -   1842816 CACTG
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30950745 5 +  31380117 CACTC
i otoGar3.GL873533          C 0 I 2
s canFam3.chr9               5825772 5 -  61074082 cacca
i canFam3.chr9              I 400 C 0
e dasNov3.JH564958            403408 0 -    584178 C
e aotNan1.NW_018502759v1     9387916 228 +  14477005 I
e cerAty1.NW_012001627v1     4964124 450 +  14009840 M

a score=195266.000000
s hg38.chr15_KI270851v1_alt   254838 34 +    263054 TCTCTTCCCCTGTGATT-GGGGGCTCCATGCCTCT
s panTro5.chr15             72198543 34 -  83230942 TCTCTTCCCCTGTGATT-GGGGGCTCCATGCCTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71435343 34 -  99763055 TCTCTTCCCCTGTGATT-GGGGGCTCCATGCCTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14624 34 -    281578 TCTCTTCCCCTGTGATT-GGGGGCTCCATGCCTCT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8431536 35 + 169600520 TCTGTTCCCTTATGATTGGGGGGCTCTATGCCTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91230414 34 - 171882078 TCTCTTCCCCTATGACT-GGGAGCTCCATGCCTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      411672 32 -   9617498 TCTCTT-CCCTATGACT-GGGGGCTCC-TGGCTCT
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7578547 35 +  58131712 TCTCTTTCCCTATAATTGGGGAGCTCCATGCCTCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      117827 35 +   7069685 TCTCTTCCCCTGTGATTGGGGGGCTCCATGCCTCT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3038423 35 +   3749464 TGTCTTCCCCTATGATTGGGGGGCTCCATGCCTCT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72455521 35 - 132174527 CCTCTTTTCCTGTGATTGGGGGGTTCCATGCCTCT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1009773 35 -   1842816 TCTCTTGCCCTATGACTGGGGGGCTCCATGCCTCG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9388144 34 +  14477005 TCTCTTTCCCTATGATT-GGGGGCTCCATGCCTCT
i aotNan1.NW_018502759v1    I 228 C 0
s otoGar3.GL873533          30950752 35 +  31380117 GTGATCATGATGTGATAGGGGTGCTCAGTACCTCT
i otoGar3.GL873533          I 2 C 0
s canFam3.chr9               5825777 32 -  61074082 tctcttgaccTC--GTT-AGGGGCCTGAGCTCTCT
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958            403408  0 -    584178 C
e cerAty1.NW_012001627v1     4964124 450 +  14009840 M

a score=314083.000000
s hg38.chr15_KI270851v1_alt   254872 42 +    263054 AGCTAGGATGATGATGTCCAGACCTGAGAGGAGCCCAGGGCT
s panTro5.chr15             72198577 42 -  83230942 AGCTGTGATGATGATGTCCAGACCTGAGAGGAGCCCAGGGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71435377 42 -  99763055 AGCTGTGATGATGATGTCCAGACCTGAGAGGAGCCCAGGGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14658 42 -    281578 AGCTGGGATGATGATGTCCAGACCTGAGAGGAGCCCAGGGCT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8431571 42 + 169600520 AGCTGGGATGATGATGTCCAGACCTGGGAGGAGCCCAGGGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91230448 42 - 171882078 AGCTGGGATGATGATGTCCAGACCTGGGAGGAGCCCAGGCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      411704 41 -   9617498 AGCTGGGATGATGATGTCCAGACCTGGGAGGAGCCAGGGCT-
i macNem1.NW_012017799v1    C 0 I 13
s chlSab2.chr26              7578582 42 +  58131712 AGCTGGAATGATGATGTCCAGACCTGAGAGGAGCCCAGGGCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      117862 42 +   7069685 AGCTGGGATGATGATGTCCAGACCTGGGAGGAGCCCAGGGCT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3038458 42 +   3749464 AGCTGGGATGACGATTTCCAGACCTGAGAGGAGCCCAGGGCT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72455556 42 - 132174527 AGCTGGGATGAAAATGTGTAGACCTGGGAGGAGCCCAGGGCC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1009808 42 -   1842816 AGCTGGGATGATGATGTCCAGACCTGGGAGGAGCCCAGGGCT
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9388178 40 +  14477005 AGCTGGAATGATGATGTCCAGACCT--GAGGAGCCCAGGGCT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30950787 42 +  31380117 AGCTAGGATGATCATTTCCAGACCTCGGAGAAACCCAGGACT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5825809 30 -  61074082 AGCCAGGACGAGGACCTTCAG------------CCCAGGGAT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            403408 30 -    584178 AGCCAGGAAAATGACCTATGG------------CCCAAGGCT
i dasNov3.JH564958          C 0 C 0
e cerAty1.NW_012001627v1     4964124 450 +  14009840 M

a score=38385.000000
s hg38.chr15_KI270851v1_alt   254914 14 +    263054 ACCCACCTTTAAAA
s panTro5.chr15             72198619 14 -  83230942 ACCCACCTCTAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71435419 14 -  99763055 ACCCACCTCTAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14700 13 -    281578 A-CCACCTTTAAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8431613 14 + 169600520 ACCCACCTGTAAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91230490 13 - 171882078 -CACACGTCTAATA
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              7578624 13 +  58131712 ACCAACCTCTAA-A
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      117904 14 +   7069685 CCACATGTCTAATA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3038500 14 +   3749464 ACCCACCTCTAAAA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72455598 13 - 132174527 ACCCACCTCTAAA-
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1009850 14 -   1842816 ACCCGCCTCTAAAA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9388218 14 +  14477005 ATCCACTTCTAAAA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30950829  3 +  31380117 ----ACC-------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5825839 14 -  61074082 ACCCACTCTGTAGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            403438 13 -    584178 ACCTAC-TCTAAGA
i dasNov3.JH564958          C 0 C 0
e cerAty1.NW_012001627v1     4964124 450 +  14009840 M
e macNem1.NW_012017799v1      411745 13 -   9617498 I

a score=544861.000000
s hg38.chr15_KI270851v1_alt   254928 82 +    263054 GTCAGA-GGCAGGAAGCAAGAA------------ACAGGACTGCCCTGGGGGGTGCTGTGGTCACCA-G----CCCCCAGGCTGGAAGCTGCCTCT--------GGCC
s panTro5.chr15             72198633 88 -  83230942 GTCAGAGGGCAGGAAGCAAGAAACAG------TCACAGTACTGCCCTGGATGGTGCTGGGGTCACCT-G----CCCCCAGGCTGG-AGCTGCCTCT--------GGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71435433 88 -  99763055 GTCAGAGGGCAGGAAGCAAGAAACAG------TCACAGTACTGCCCTGGATGGTGCTGGGGTCACCT-G----CCCCCAGGCTGG-AGCTGCCTCT--------GGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14713 88 -    281578 GTCAGA-GGCAGGAAGCAAGAAACAG------TCACAGGACTGCCCTGGGGGGTGCTGTGGTCACCA-G----CCCCCAGGCTGGAAGCTGCCTCT--------GGCC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8431627 88 + 169600520 GTCAGAAGGCAGGAAGGAAGAAAGGG------TCATAAGACTGCCCTGGAGGGTGCTGAGGTCACCT-G----CCCCCAGGCTGG-AGCTGCTTCT--------GGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91230503 88 - 171882078 GTCAGAGGGCAGGAAGCAAGAAACAG------TCACAGGACTGCCCTGGAGGGTGCTGGGGTCACCT-G----CTCCAAAGCTGG-AGCTGGCTCT--------GGCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      411758 87 -   9617498 GTCAGAGGGCAGT-AGCAAGAAACAG------TCACCAGACTGCCCTGAGAGGTGCTGGGGTCACCTGG----CTCCAAAGCTGG-AGCT-GCTCT--------GGCC
i macNem1.NW_012017799v1    I 13 C 0
s chlSab2.chr26              7578637 88 +  58131712 ATCAGAGGGCAGGAAGCAAGAAACAG------GTATAGGGCTACCCTGGAGGGTGCTGAGGTCACCT-T----CCCTCCAGCTAG-AGCTGCCTTT--------GGCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      117918 88 +   7069685 GTCAGAGGGCAGGAAGCAAGAAACAG------TCACAGGACTGCCCTGGAGGGTGCTGGGGTCACCT-G----CTCCAAGACTGG-AGCTGCCTCT--------GGCC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3038514 88 +   3749464 GTCAGAAGGCAGGAAGGAAGAAACAG------TCACAAGACTGCCCTGGAGGGTGCTGGGGTCACCT-G----CCCCCAAGCTGC-AGCTGCCTCT--------GGCC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72455611 85 - 132174527 ---AGAGGGCAGAAAGCAAGAAACAG------TGACAGGACTGTCCTGAAGGGTGCTGGGGTCACCT-G----CCCTCAGGCTGG-AGCTGCCTTT--------GGCT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1009864 87 -   1842816 GTCAGAGGGCAGGAAGCAAGAAACGG------TCACAGGACTGCCCTGGAGGGTG-TGGGGTCACCT-G----CCCCCAGGGTGG-AGCTGCCTGT--------GGCC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9388232 89 +  14477005 GTCTGAGAGCAGGAAGCAAGAAACAG------TCACAGGACTTCCCTGGAGGGTGCTGAGGTCACCT-GT---CCCCTCAGCTGG-AGCTGCTTCT--------GGCC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30950832 77 +  31380117 ---------CAGGGAGTGATAA---G------TCACAGACCTGTTCTGCAGGTCTCTGAGGTCATGT-AT---CCCTCAGTCTAG-AGCTGCGTCT--------GCCC
i otoGar3.GL873533          C 0 I 5
s canFam3.chr9               5825853 98 -  61074082 GTCAGACAGCTGGGAGTGACAAGGGGCCTGCACCACAGGCAGGATTGGAAGGACTCTGGAGTCAGGT-GTCCCCCCACAGGCTGG-AGCTGCACCA--------TCCT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            403451 94 -    584178 GTCAGAGAGCAGGGAGTAAGGAATAG------TCACAGGCTTG----GCAGGACTCTAGGGTCACCT-GTC--CTCCCAGGCCAG-AGCTGGCTCTCTGACCTGGGCC
i dasNov3.JH564958          C 0 C 0
e cerAty1.NW_012001627v1     4964124 450 +  14009840 M

a score=2167092.000000
s hg38.chr15_KI270851v1_alt   255010 275 +    263054 TGGTACC-TCCCCTC-----------------------------------------------CCCAGAGGCTGCT--GCCCGCCTCCC-AGCCCTTCTTGGATGGGGTGGAGG-----TTTCCGACTCCTTCACCTCACCAAGCTTCTCCTGTAGCTC------------------------CTTTACT----TGCTGCTCCAACTGCAGTGCGCT---------CTTGTTCTCATTGTTCTGGACAGAG-AGAAGCAATCAGCAGCCACCCACTGCAGCTGGAGACCCCAGAACTTGG----TGTCTGCCTCCCATGGCACTGGGAAGGCTGGAGACAGGTTAGAAAAATCACCCCCTCT-CTCCCA-------CAGCCA
s panTro5.chr15             72198721 275 -  83230942 TGGTACC-TCCCCTC-----------------------------------------------CCCAGAGGCTGCT--GCCCGCCTCCC-AGTCCTTTTTGGATGAGGTGGAGG-----TTTCCGTGTCCTTCACCTCGCCCAGCTTCTCCTGTAGCTC------------------------CTTTACT----TGCTGCTCCAACTGCAGTGCGCT---------CTTGTTCTCATTGTTCTGGACAGAG-AGAAGCAATCAGCAGCCACCCATTGCAGCTGGAGACCCCAGAACTTGG----TGTCTGCCTCCCATGGCACTGGGAAGGCTGGAGGCAGGTTAGAAAAATCATCCCCTCT-CTCCCA-------CAGCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71435521 275 -  99763055 TGGTACC-TCCCCTC-----------------------------------------------CCCAGAGGCTGCT--GCCCGCCTCCC-AGTCCTTTTTGGATGAGGTGGAGG-----TTTCCGTGTCCTTCACCTCGCCCAGCTTCTCCTGTAGCTC------------------------CTTTACT----TGATGCTCCAACTGTAGTGCGCT---------CTTGTTCTCATTGTTCTGGACAGAG-AGAAGCAATCAGCAGCCACCCATTGCAGCTGGAGACCCCAGAACTTGG----TGTCTGCCTCCCATGGCACTGGGAAGGCTGGAGGCAGGTTAGAAAAATCATCCCCTCT-CTCCCA-------CAGCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       14801 273 -    281578 TGGCACC-TCCCCTC-----------------------------------------------CCAAGAGGCTGCT--GCCCGCCTCCC-AGCCCTTCTTGGATGGGGTGGAGG-----TTTCCGTCTCCTTCACCTCACCAAGCTTCTCCTGTAGCTC------------------------CTTTACT----TGCTGCTCCAACTGCAGTGCGCT---------CTTGTTCTCATTGTTCTGGACAGCG-AGAAGCAATCGGCAGCCACCCACTGCAGCTGGAGACCCCAGAACTTGG----TGTCTGCCTCCCATGGCACTGGGAAGGCTGGAGGCAGGTTAGAAAAATCACCCC--CT-CTCCCA-------CAGCCA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8431715 275 + 169600520 TGGCACC-TCCCCTC-----------------------------------------------CCCAGAGGCTGGT--GCCCGCTTCCC-AGCCCTTCTTGGATGGGGGGGGGG-----TTACAATCTACTTCACCTCGCCCAGCGTCTCCTGTAGCTC------------------------CTCCACT----TGCTGCTCCAACTGCAGTGCGCT---------CTTGTTCTCATTGTTCTGGACAGAG-AGAAGCAATCAGCAGCCACCCACTGAAACTGGAGACCCCAGAACTTGG----TGTCTGCCTCCCACGGCACGGGGAAGGGTGGAGGCAGGTTAGAAAAATCATCCCCTCT-CTCCCA-------CAGCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91230591 274 - 171882078 TGGCACC-TCCCCTC-----------------------------------------------CCCAGAGGCTGGT--GCCCGCTTCCC-AGCCCTTCTTGGATGGGGCAGAGG-----TTACCGTTTCCTTCACCTCACCCAGCTTCTCCTGCAGCTC------------------------CTTTACC----TGCTGCTCCAACTGCAGTGCGCT---------CTTGTTCTCATTGTTCTGGACAGAC-AGAAGCAATCAGCAGCCACCCACTGCAGCTGGAGAACCAAGAATTTGG----TGTCTGCCTCCCATGGCACCAGGAAGGATGGAGGCAGGTGAGAAAAATCATCCCCTCT-CT-CCA-------CAGCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      411845 269 -   9617498 TGGCACCTTCCCCTC-----------------------------------------------CCCAGAGGCT-GT--GCCCGC-TCCC-AG--CTTCTTGGATGGGGCAGAGG------TACCGTTTCCTTCACCTCG-CCAGTTTCTCCTGCAGCTC------------------------CTTTACC----TGCTGCTCCAACTGCAGTGCGCT---------CTTGTTCTCATTGTTCTGGACAGAC-AGAAGCAATCAGCAGCCACCCACTGCAGCTGGAGAACCAAGAACTTGG----TGTCTGCCTCCCATGGCACCGGGAAGAGTGGAGGCAGGTGAGAAAAATCATCCCCTCT-CT-CCA-------CAGCCT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4964586 274 +  14009840 TGGCACC-TCCCCTC-----------------------------------------------CCCAGAGGCTGGT--GCCCGCTTCCC-AGCCCTTCTTGGATGGGGCAGAGG-----TTACCATTTCCTTCACCTCACCCAGCTTCTCCTGCAGCTC------------------------CTTTACC----TGCTGCTCCAACTGCAGTGCGCT---------CTTGTTCTCGTTGTTCTGGACAGAG-AGAAGCAATCAGCAGCCACCCACTGCAGCTGGAGAACCAAGAACTTGG----TGTCTGCCTCCCATGGCACCGGAAAGAGTGGAGGCAGGTGAGAAAAATCATCCCCTCT-CT-CCA-------CAGCCT
i cerAty1.NW_012001627v1    M 450 C 0
s chlSab2.chr26              7578725 276 +  58131712 TGGGACC-TCCCCTC-----------------------------------------------CCCAGAGGCTGGT--GCCTGCCTCCC-AGCCCATTTTGGATGGGGCAGAGG-----TTACCATCTCCTTCACCTCACTCACCTTCTCCTGCAGCTC------------------------CTTTACT----CGCTGCTCCAACTGCAGTGCGCT---------CTTGTTC---TCGTTCTGGACAGAG-AGAAGCAATCAGTGGCCATCCACTGCAGCTGGAGAACCCTGAACTTGGTGTCTGTCTGTCTCCCATGTCACCGGGAAGGGTGTAGGCAGGTTAGAAAAATCATCCCCTCTCCC-CCA-------CAGCCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      118006 274 +   7069685 TGGCACC-TCCCCTC-----------------------------------------------TCCAGAGGCTGGT--GCCCGCTTCCC-AGCCCTTCTTAGATGGGGCAGAGG-----TTACCATTTCCTTCACCTCACCCAGCTTCTCCTGCAGCTC------------------------CTTTACC----TGCTGCTCCAACTGCAGTGCGCT---------CTTGTTCTTGTTGTTCTGGACAGAG-AGAAGCAATCAGCAGCCACCCACTGCAGCTGGAGAACCAAGAACTTGG----TGTCTGCCTCCCATGGCACCGGGAAGAGCGGAGGCAGGTGAGAAAAATCATCCCCTCT-CT-CCA-------CAGCCT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3038602 275 +   3749464 TGGCACC-TCCCCTC-----------------------------------------------CCCAGAGGCTGGT--GCCCGCCTCCC-AGCCCTTCTTGGATGGGGTGGGGG-----TTACAATCTACTTCACCTTGCCCAGCTTCTCCTGTAGCTC------------------------CTCCACT----TGCTGCTCCAATTGCAGTGCGCT---------CTTGTTCTCATTGTTCTAGACAGAC-AGAAGCAATCAGCAGCCACCCACTGCAGCTGGAGACCCCAGAACTTGG----TGTCTGCCTCCCATGGCACCGGGAAGGGTGGAGGCAGGTTAGAAAAATCATCCCCTCT-CTCCCA-------CAGCCA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72455696 275 - 132174527 TTGCCCC-TCCCCTA-----------------------------------------------CTTAGAGGCTGCT--GCCTGCCTCCC-AGCCCTTCTTGGATGGGGCAGAGG-----TTACCGTCATCTTCTGGTTGTGCAGCTTCTCCTGCAGCTC------------------------CTTTATT----TGCTGTACCAACTGCAGTGTGTT---------CTTTTTCTCATTGTTCTGGACAGAG-AGAAGCAATCAGTGGACACCCACTGCAGCTAGAGACCCCAGAACTCGG----TGTCTGCCTCCCAAGGCACCGGGAAGGGTAGAGACAGGTTAGAAAAATCATCCCCTTT-CTCCCA-------CAGCCA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1009951 271 -   1842816 TTGCATC-TCCCCTC-----------------------------------------------CCCAGAGGGCGGT--GCCTGCCTCCC-AGCCC-TCCTGGATGGGGCAGAGG-----TTACCG---TCTCTTGTTTGTCAAGCTTCTCCTGCAGCTC------------------------CCTTCCT----ACCTGCTCCAAATGCAGTGCGCT---------CCTGTTCTTGTTCTTCTGGACAGAG-AGAAGCAATCAGCGGCCACCCACTGCAGCTGGAGACCCCAAAACTTGG----TGACTGCCTCCCATGGCACCAGGAAGGGTGGAGGCAGCTTAGAAAAATTGTCTCCTTT-CTCCCA-------CAGCCG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9388321 307 +  14477005 TCACACC-TCCTGTC-----------------------------------------------CCCAGAGGCTGGT--GCCCGCCTCCC-AGCCCTTCTTGAATGAGGCAG-GG-----TTACCGTCTCCTTCAGCTCGCTCAGCTTCTCCTGCAGCTCGCCCAGCTTCTTTCCCAG----CTCCTTTTTGACGTGCTGCTCCGACTGCAGTGCACTAGTGATCTCCATGTTCTCATTAGTCTGGATAGGG-AGAAGCAATCGGCGGTCACCCACTGCAGCTGGAGACCCCAGAATTTGG----TGTCTGCCTCCCATGGCACCAGGAAGGGTGGAGGCAGGTTAGAAAAATCATCCCCTCT-CCCCGA-------CAGCCA
i aotNan1.NW_018502759v1    C 0 I 31
s otoGar3.GL873533          30950914 257 +  31380117 TGGCACC-GCCCCTC-----------------------------------------------C------------------------------TTTCTCAGATGGAACACTGG-----TTACCGTCTCCTTCATCTCGCCCAGCTCTTCCTGTAGTTGGCCCAGCTTCTTAGCCAGTTCTTTCTTCACA----TGCTGCTCAGACTGTAGTGCATTGGAAATTTCCATATTGTCATTGCTCTGGACAGAGAAAAAGTAATCA-------------GCAGCTGGAGACTCCAGAACTTGA----TGCTCACCTCCCAAGGTGCAGGGATGGGTGGAGGCAGGTTGGAAA-----------CT-CC-CCA-------CAGACA
i otoGar3.GL873533          I 5 I 2
s canFam3.chr9               5825951 301 -  61074082 GGGCAAC-CTCCCAC-----------------------------------------------CCTCCGAGCAGGTAGGTTTGTCCTCC-AGGCTTCCTCAGCTGGTGTGGGGGGTAAGTTACCATCTCCTTTAGCTCTCCCAGCTTCTCCTGCAGCTGGCCCAGCTTCTTGGCCAGCTCCTTCTTGACA----TGCTGCTCCGACTGCAGTGCGGTAGTAATCTCCATGTTCTCGTTGGACTGGAGAGAG-AAGAGGAGTCAGTGGCCAC-----------------CCCAGAACATGG----AGTCTACCTCCCACAGTGCAGGGAAGAGTGGAGGCAGGT----GTCCTCACCACCTCT-GCCCCACTCATCTCAGCAG
i canFam3.chr9              C 0 I 5
s dasNov3.JH564958            403545 354 -    584178 TAGAATC-CAATTTCATCCCTGTTGCAAacacacacacacacacacacacacacacacacaGCCCAGAGGATTGT--GCCTGTCTCCTAAGCCCTTTGCCAGTGGGACAGGGG-----TTACCGTCTCTTTGAGCTCTGCCAGCTTTTCCTGCAGCTGTTCCAGCTTCTTGGCCAGCTCTTTCTTAACA----TACTGTTCTGACTGCAGGGCACTGGTCATCTCCATATTCTCATTGCTCTGAACAGAG-AGAAGTAATCAGCAACTACCCAATGCAGCCAAAGACCCCAGAACTTGG----TGTCCCCCT-CCACAGCTCAGTTAAGGGTGAAGACAAGTTGGAAAATACGCCCCCTCA-CC-CCA-------CTCACA
i dasNov3.JH564958          C 0 C 0

a score=274733.000000
s hg38.chr15_KI270851v1_alt   255285 49 +    263054 C---------------------CTGGCTCACA-GGTGCCTTTAGAAGTAACA-TTTCATGT-GAGGGCTACAC
s panTro5.chr15             72198996 49 -  83230942 C---------------------CTGGCTCACA-GGTGCCTTTAGAAGTAACC-TTTCACAT-GAGGGCCACAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71435796 49 -  99763055 C---------------------CTGGCTCACA-GGTGCCTTTAGAAGTAACC-TTTCACAT-GAGGGCCACAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       15074 49 -    281578 C---------------------CTGGCTCACA-GGTGCCTTTAGAAGTAACC-TTTCACGT-GAGGGCTACAC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8431990 61 + 169600520 CCAGAGCA---------GGGCTCTGGCTCACA-GGTGCCTTTAAAAGTAACA-TTTCACGT-GAGGGCTACAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91230865 61 - 171882078 CCAGAGCA---------GGGCTCTGGCTCACA-GGTGCCTTTAGAAGTAACA-TTTCACGT-GAGGGCTACAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      412114 61 -   9617498 CCAGAGCA---------GGGCTCTGGCTCACA-GGTGCCTTTAGAAGTAACA-TTTCACGT-GAGGGCTACac
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4964860 61 +  14009840 CCAGCGCA---------GCGCTCTGGCTCACA-GGTGCCTTTAGAAGTAACA-TTTCATGT-GAGGGGTACAC
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7579001 70 +  58131712 TCAGAGCAGGGACTGATGAGCTCTGGCTCACA-GATGTCTTTAGAAGTACCA-TGTCATGT-GAGGGCTACac
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      118280 61 +   7069685 CCAGCGCA---------GCGCTCTGGCTCACA-GGTGCCTTTAGAAGTAACA-TTTCATGT-GAGGGCTACAC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3038877 61 +   3749464 CCAGAGTA---------GGGCTCTGGCTCACA-GGTGCCTTTAGAAGTAACA-TTTCACGT-GAGGGCTACAC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72455971 61 - 132174527 TCAGAGCA---------GGACTCTGGTTCACA-GGTGCCTTTAGAAGTACCA-TTTCACAT-GAGGGCTACAT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1010222 52 -   1842816 TCAGAGCA---------GGGCTGTGGCTCACA-GGTGCCTTTAGAAGCCCCA-TTTCA----------TATac
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30951173 41 +  31380117 CTGGAGTG---------GGACTCTG---------------------GTACCA-TTTCACAT-GAGCTCTAGCC
i otoGar3.GL873533          I 2 C 0
s canFam3.chr9               5826257 51 -  61074082 ---------------------TCCGGCTCACAGGGTGCCTTCAAGGGCACCATTTTCACAT-TGGGTGCATAC
i canFam3.chr9              I 5 I 4
s dasNov3.JH564958            403899 47 -    584178 TCTGAGCA---------------TGGATCTCA-CATG--------GGCACCA-CTGCACCTGGAGGTCGGCA-
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9388628 31 +  14477005 I

a score=536339.000000
s hg38.chr15_KI270851v1_alt   255334  64 +    263054 TGCCCCATTTTAGAGGTGGGGAAACAAAGGCCCGGAGGG-----------------------------CT-------------------------------------AGGGAGGAGGGCAGGCTCCCCAG
s panTro5.chr15             72199045  61 -  83230942 TGccccattttagaggtggggaaacaaaggcccagaggg-----------------------------ct-------------------------------------tG---GGAGGGCAGGCTCCCCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71435845  61 -  99763055 TGccccattttagaggtggggaaacaaaggcccagaggg-----------------------------ct-------------------------------------tG---GGAGGGCAGGCTCCCCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       15123  64 -    281578 TGCCCCATTTTAGAGGTGGGGAAACAAAGGCCCGGAGGG-----------------------------CT-------------------------------------AGGGAGGAGGGCAGGCTCCCCAG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8432051  64 + 169600520 TGccccattttacaagttgggaaacaaaggcctggaggg-----------------------------CT-------------------------------------AGGGAGGAGGGCAGGCTCCCCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91230926  64 - 171882078 TGccccattttacaggtggggaaacaaaggcctggaggg-----------------------------ct-------------------------------------aggGAGGAGGGCAGGCTCCCCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      412175  64 -   9617498 tgtcccattttacaggtggggaaacaaaggcctggaggg-----------------------------ct-------------------------------------aggGAGGAGGGCAGGCTCCCCAG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4964921  64 +  14009840 TGccccattttacaggtggggaaacaaaggcctggaggg-----------------------------CT-------------------------------------AGGGAGGAGGGCAGGCTCCCCAG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7579071  64 +  58131712 tgcctcattttacaggtggggaaacaaaggcctggaggg-----------------------------ct-------------------------------------aggGATGAGGGCAGGCTCCCCAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      118341  64 +   7069685 TGCCGCATTTTACAGGTGGGGAAACAAAGTCCTGGAGGG-----------------------------CT-------------------------------------AGGGAGGAGGGCAGGCTCCCCAG
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3038938  64 +   3749464 TGccccattttacaaattgggaaacaaaggcctggagGA-----------------------------CT-------------------------------------AGGGAGGAGGGCAGGCTCCCCAG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72456032  60 - 132174527 TCCCCCATTTTACAGGTGGGGAAACAAACACATTGAGGG-----------------------------CT-----------------------------------------CGAAGAACAGGCTCCCCAG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1010274  64 -   1842816 tcccccattttgcaggtgggaaaacaaaggcccagaggg-----------------------------ct-------------------------------------gaggAGGAGGGCAGTCTCCCCAG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9388659  64 +  14477005 TGCCCCATTTTACAGGTGGGAAAACAAAGGGCCGGAGGG-----------------------------CT-------------------------------------AGGGAGGAGAGCAGGCTCCCCAG
i aotNan1.NW_018502759v1    I 31 I 304
s otoGar3.GL873533          30951214  64 +  31380117 CACCCAGTTTTACAGGTGGGAAATCAAAGTCCCAGAGGG-----------------------------CC-------------------------------------AGTGAGGAGGGCAGGCTAGTTAG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5826312  83 -  61074082 TtcccccatttacacgtggggagacaaaggcctagaggggttaactgtcttgcccaGCACCAAAAGACTT-------------------------------------GGCTAGGAGGAGA----------
i canFam3.chr9              I 4 C 0
s dasNov3.JH564958            403946 101 -    584178 CAccccactttataggtgggaaaaccaaggcccagaggg-----------------------------ttcaagtgccttattctacaccaaaggacatggcaagtgaggaatgagggcaggttagccAG
i dasNov3.JH564958          C 0 C 0

a score=-940.000000
s hg38.chr15_KI270851v1_alt   255398 5 +    263054 CTGGG-
s panTro5.chr15             72199106 5 -  83230942 GAGGG-
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71435906 5 -  99763055 GAGGG-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       15187 5 -    281578 TTGGG-
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8432115 5 + 169600520 TTGGG-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91230990 4 - 171882078 GT-GG-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      412239 4 -   9617498 GT-GG-
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4964985 4 +  14009840 TT-GG-
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7579135 5 +  58131712 GTGGG-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      118405 4 +   7069685 GT-GG-
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3039002 5 +   3749464 GTGGG-
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72456092 5 - 132174527 GTGGG-
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1010338 5 -   1842816 ATGGG-
i cebCap1.NW_016107745v1    C 0 I 209
s otoGar3.GL873533          30951278 5 +  31380117 GCGAG-
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5826395 3 -  61074082 --AGG-
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            404047 4 -    584178 --GGGC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9388723 304 +  14477005 I

a score=271706.000000
s hg38.chr15_KI270851v1_alt   255403 47 +    263054 GCAACGCACTGGCTCCTCGAAGACGCTCTGTGGCTTGGCCAGCTGCT----
s panTro5.chr15             72199111 47 -  83230942 GCAACGCACCAGCTCCTCGAAGATGCTCTGTGGCTCGGCCAGCTGCT----
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71435911 47 -  99763055 GCAACGCACCAGCTCCTCGAAGATGCTCTGTGGCTCGGCCAGCTGCT----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       15192 47 -    281578 GCAACGCACCGGCTCCTCAAAGACGCTCTGTGGCTTGGCCAGCTGCT----
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8432120 47 + 169600520 GCAACGCAGCAGCTCCTCGACGCCGCTCTGTGGCTCGGCCAGCTGCT----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91230994 47 - 171882078 GCAACACACCAGCTTCTCGAAGCCACTCTGTGGCTCGGCCAGCTGCT----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      412243 47 -   9617498 GCAACACACCAGCTTCTCGAAGCCACTCTGTGGCTCGGCCAGCTGCT----
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4964989 47 +  14009840 GCAACACACCAGCTCCTCGAAGCCATTCTGTGGCTCGGCCACCTGCT----
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7579140 47 +  58131712 GCAACCCACCAGATCTTTGAAGCTGCACTGTGGCTCAGCCAGCTGCT----
i chlSab2.chr26             C 0 I 237
s manLeu1.NW_012109919v1      118409 47 +   7069685 GCAACACACCAGCTCCTCGAAGCCACTGTATGGCTCAGCCAGCTGCT----
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3039007 47 +   3749464 GCAACGCACCAGCTCCTCGACGCCGCTCTGTGGCTCGGCCAGCTGCT----
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72456097 21 - 132174527 TCAGCGCACCAGCTCCTC---------------CTC---------------
i calJac3.chr10             C 0 C 0
s otoGar3.GL873533          30951283 47 +  31380117 GACACACACCAGCTTGATAAAGCCATCCTGCAACTCCGCCAGCTGGT----
i otoGar3.GL873533          C 0 I 20
s canFam3.chr9               5826398 47 -  61074082 GCTACACACCAGCTTGACGAAGCCGTTCTGCAGCTCAACCAGCTGCT----
i canFam3.chr9              C 0 I 45
s dasNov3.JH564958            404051 51 -    584178 GCTGCGCACCAGCCTGATAAAGCCATTCTGCAACTCGACCAGTTGCTCCTT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9388723 304 +  14477005 I
e cebCap1.NW_016107745v1     1010343 209 -   1842816 I

a score=-2361.000000
s hg38.chr15_KI270851v1_alt   255450 24 +    263054 GAAGGCTC-----------------------------------TTGTGCTG------CTCCTGAA
s panTro5.chr15             72199158 24 -  83230942 GAAGCCTC-----------------------------------TTATGCTG------CTCCTAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71435958 24 -  99763055 GAAGCCTC-----------------------------------TTATGCTG------CTCCTAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       15239 24 -    281578 GAAGCTTC-----------------------------------TCATGCTG------CTCCTGAA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8432167 24 + 169600520 GAAGCTTC-----------------------------------TCATCCTG------CTCTCGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91231041 18 - 171882078 GAAGCCTC-----------------------------------TCCTCCTG------CT------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      412290 24 -   9617498 GAAGCCTC-----------------------------------TCCTCCTG------CTCCCAAA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4965036 24 +  14009840 GAAGTCTC-----------------------------------TCGTCCTG------CTCCCGAA
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      118456 24 +   7069685 GAAGCCTC-----------------------------------TCGTCCTG------CTCCCGAA
i manLeu1.NW_012109919v1    C 0 I 21
s colAng1.NW_012115677v1     3039054  4 +   3749464 GAAG-------------------------------------------------------------
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72456118 11 - 132174527 ------------------------------------------------CTG------CAGCCGCA
i calJac3.chr10             C 0 C 0
s otoGar3.GL873533          30951350 49 +  31380117 GAAACCGCAAT----------------GCTGATGGTGGCACGGTCATTCTGCATGGTCTCCAGAA
i otoGar3.GL873533          I 20 I 9
s canFam3.chr9               5826490 24 -  61074082 -----------------------------------------GATCGCTCTGCATGCTCTCCAGAA
i canFam3.chr9              I 45 I 9
s dasNov3.JH564958            404102 53 -    584178 GAGCTCGCGGTTCTGGGAGAGTGCGCGGCTGATGGTGGTGCGGTCGCTCTG------CA------
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9388723 304 +  14477005 I
e cebCap1.NW_016107745v1     1010343 209 -   1842816 I
e chlSab2.chr26              7579187 237 +  58131712 I

a score=48935.000000
s hg38.chr15_KI270851v1_alt   255474 18 +    263054 ---------------------TCCTCTCTTCCTGCT--------------------TCC-
s panTro5.chr15             72199182 18 -  83230942 ---------------------GCCTCTCCTCCTGCT--------------------TCC-
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71435982 18 -  99763055 ---------------------GCCTCTCCTCCTGCT--------------------TCC-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       15263 18 -    281578 ---------------------GCCTCTCCTCCTGCT--------------------TCC-
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8432191 18 + 169600520 ---------------------GTCTCTCCTCCTGCT--------------------TCC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91231059  3 - 171882078 --------------------------------------------------------GCT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      412314 38 -   9617498 ---------------------GCCTTTCCTCCTGCTCCTAAAGCCTCTCTTGCTGCTCC-
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4965060 18 +  14009840 ---------------------GCCTCTCGTCCTGCT--------------------CCC-
i cerAty1.NW_012001627v1    C 0 I 1077
s chlSab2.chr26              7579424 18 +  58131712 ---------------------TCCTCTCCTCCTGCT--------------------CCC-
i chlSab2.chr26             I 237 C 0
s manLeu1.NW_012109919v1      118501 18 +   7069685 ---------------------Gcctctcctcctgct--------------------cct-
i manLeu1.NW_012109919v1    I 21 C 0
s colAng1.NW_012115677v1     3039058 17 +   3749464 ----------------------TCTCTCCTCCTGCT--------------------CAC-
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72456129 18 - 132174527 ---------------------TCCTCTCTTTCTGCT--------------------CTT-
i calJac3.chr10             C 0 C 0
s otoGar3.GL873533          30951408 18 +  31380117 ---------------------GCTCTTCCGCCTGGT--------------------CAC-
i otoGar3.GL873533          I 9 I 16
s canFam3.chr9               5826523 18 -  61074082 ---------------------GTTCCTCTGCCTGCT--------------------CCC-
i canFam3.chr9              I 9 I 4
s dasNov3.JH564958            404155 40 -    584178 TGCTCTCCAGAATCTGTTCCCGCTCGGCCGCCTGCT--------------------CTCC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9388723 304 +  14477005 I
e cebCap1.NW_016107745v1     1010343 209 -   1842816 I

a score=291924.000000
s hg38.chr15_KI270851v1_alt   255492 55 +    263054 -------GAAGCC-----TCTC-TTCCTGCTCCCGAATCCTCTCTTCTTGTCCCCGGTTCAGGAGACT
s panTro5.chr15             72199200 55 -  83230942 -------GAAGCC-----TCTC-TTCCTGCTCCCGAATCCTCTCTTCTTGTCCCCAGTTCAGGAGACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71436000 55 -  99763055 -------GAAGCC-----TCTC-TTCCTGCTCCCGAATCCTCTCTTCTTGTCCCCAGTTCAGGAGACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       15281 55 -    281578 -------GAAGCC-----TCTC-TTCCTGCTCCCGAATCCTCTCTTCTTGTCGCCGGTTCAGGAGACT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8432209 55 + 169600520 -------GAAGCT-----TCTC-CTCCTGCTCCTGAAGCCTCTCCTTTTGTGGCTGGTTCAGGAGACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91231062 55 - 171882078 -------GAAGCC-----TCTC-CTTCTGCTCTTGAAGCCTCTCCTTTTGCCCCCAGATCAGGACACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      412352 55 -   9617498 -------GAAGCC-----TCTC-CTCCTGCTCCTGAAGCCTCTCCTTTTGCCCCCAGATCAGGACACT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4966155 55 +  14009840 -------gaagcc-----tctc-ctcctgctcctGAAGCCTCTCCTTTTGCCCCCAGATCAGGACACT
i cerAty1.NW_012001627v1    I 1077 C 0
s chlSab2.chr26              7579442 55 +  58131712 -------GGAGCC-----TCTC-CTCCTGCTCCTGAAGCCTCTCCTTTTGTTCCTTGCTCAGGAGACT
i chlSab2.chr26             C 0 I 89
s manLeu1.NW_012109919v1      118519 55 +   7069685 -------gaagcc-----tctc-ctcctgctcctGAAGCCTCTCCTTTTGCCCCCAGATCAGGACACT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3039075 55 +   3749464 -------AAATTT-----TCTC-CTCCTGCTCCCAAGGCCTCTCCTTTTGTGCCTGGTTCAGGAGACT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72456147 55 - 132174527 -------GCAAAG-----ACTC-CTCCTGCTGCCGCAGCCTTTTTTTCTGCTCAGAGCTCAGGCGATT
i calJac3.chr10             C 0 C 0
s otoGar3.GL873533          30951442 48 +  31380117 -------------------CTG-CTCCAGCTCCCGTAGCCGCTGCCCCTGCTCCAGGTTCAGGCGAAT
i otoGar3.GL873533          I 16 C 0
s canFam3.chr9               5826545 60 -  61074082 -------GCACTCGGCTGCCCG-CTCCAGCTCCAGCAGCCGCTGCTCCTGCTCCCGGTTCAGGCGACT
i canFam3.chr9              I 4 C 0
s dasNov3.JH564958            404195 63 -    584178 CCAGCGCTCAGCT-----GCTCTCTCGAGCTCCAGCAGCCGCTGCTCCTGCTCCTGATTCAGGCGACT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9388723 304 +  14477005 I
e cebCap1.NW_016107745v1     1010343 209 -   1842816 I

a score=330393.000000
s hg38.chr15_KI270851v1_alt   255547 74 +    263054 TATGCGCTGATTGTTTTTGACCTGGGCCTGGAGCGCTCCTGCCACTCTCTCTAGTTCCTTCCTCAGG------------------TGC------------TGCA------
s panTro5.chr15             72199255 74 -  83230942 TATGCACTGATTGTTTTTGACCTGGGCCTGGAGCTCTACTGCCACTCTCTCTAGTTCCTTCCTCAGG------------------TGC------------TGCA------
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71436055 74 -  99763055 TATGCACTGATTGTTTTTGACCTGGGCCTGGAACTCTACTGCCACTCTCTCTAGTTCCTTCCTCAGG------------------TGC------------TGCA------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       15336 74 -    281578 TATGTGCTGATTGTTTTTGACCTGGGCCTGGAGCTCTCCTGCCACTCTCTCTAGTTCCTTCCTCAGG------------------TGC------------TGCA------
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8432264 74 + 169600520 TACGTGCTGATGGTTTTCCACGTGGGCCTGGAGCTCTGCTGACACCCTCTCTAGTTCCTTCCTCAGG------------------TGC------------TGCA------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91231117 74 - 171882078 CATGCGCTGATTGTTGTCCACCTGGGCTTGGAGTTCTCCTGCCATTCTCTCAACTTCCTTCCTCAGA------------------TGC------------TGCA------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      412407 74 -   9617498 CATGCGCTGATTGTTGTCCACCTGGGCTTGGAGTTCTCCTGCCATTCTCTCAACCTCCTTCCTCAGA------------------TGC------------TGCA------
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4966210 74 +  14009840 CATGCATTGATTGTCGTCCACCTGGGCTTGGAGTTCTCCTGCCATTCTCTCAACCTCCTTCCTCAGA------------------TGC------------TGCA------
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      118574 74 +   7069685 CATGCGCTGATTGTTGTCCACCTGGGCTTGGAGTTCTCCTGCCATTCTCTCAACCTCCTTCCTCAGA------------------TGC------------TGCA------
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3039130 74 +   3749464 TACGTGCTGATAGTTTTCCACCTGGGCCTGGAGCTCTGCTGACACTCTGTCTACTTCCTTCCTCAGG------------------TGC------------TGCA------
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72456202 92 - 132174527 CAAGTTCTCATTGTTTTTCACCTGAGCTTGCAGCTGCTCTGTCAAACTCTCCAGATTTTTCCTCAGAAGGTTGGTCTCAAATTTTAGC------------TGTT------
i calJac3.chr10             C 0 C 0
s otoGar3.GL873533          30951490 74 +  31380117 CAAACCCTCATTGTCTTGCACCTGGTCACGCAGCTGTCCTGCCAGGCTTTCCAGCTGCTTTTGCAGC------------------TGC------------TCCG------
i otoGar3.GL873533          C 0 I 18
s canFam3.chr9               5826605 86 -  61074082 CAAACCTTCGTTGTCTTTCACTTGGGCCTGCACCTGCTCGGCCAGGCTCTCCAGCTCCTTCTGTAGT------------------TGTTCAGTCTCGGCGTGCA------
i canFam3.chr9              C 0 I 9
s dasNov3.JH564958            404258 92 -    584178 CAGGCCCTCGTTGTCATGTACCTGAGCCTGCAGTCGCTCTGCTAGGTTCTCTAGCTCCTTCTGCAGC------------------TTTTCAGCCTCTGCTTGCAGCTGCT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9388723 304 +  14477005 I
e cebCap1.NW_016107745v1     1010343 209 -   1842816 I
e chlSab2.chr26              7579497 89 +  58131712 I

a score=309669.000000
s hg38.chr15_KI270851v1_alt   255621 40 +    263054 GCTCCACCTCAGAGGGCACTGCTGGGGGCTCCGGGGGCAA
s panTro5.chr15             72199329 40 -  83230942 GCTCCACCTCAGAGGGCACTGCTGGGGGCTCTGTAGGCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71436129 40 -  99763055 GCTCCACCTCAGAGGGCACTGCTGGGGGCTCTGTAGGCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       15410 40 -    281578 GCTCCACCTCAGAGGGCACTGCTGGGGGCTCCGGGGGCAA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8432338 40 + 169600520 GCTCCTCCTCAGGGGGCACTGCTGGGCGCTCCGGGGGCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91231191 40 - 171882078 GCTCCACCTCAGAGGGCACTGCTGGAGGCTCCAGAGGCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      412481 40 -   9617498 GCTCCACCTCAGAGGGCACTGCTGGAGGCTCCAGAGGCAG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4966284 40 +  14009840 GCTCCACCTCAGAGGGCACTGCCGGAAGCTCCAGAGGCAG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7579586 40 +  58131712 GCTCCACCTCAGAGGGCCCTGCTGGGGGCGCTGAGGACGT
i chlSab2.chr26             I 89 C 0
s manLeu1.NW_012109919v1      118648 40 +   7069685 GCTCCACCTCAGAGGGCACTGCTGGAGGCTCCAGAGGCAG
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3039204 40 +   3749464 GCTCCTCCTCAGGGGGCACTGCTGGGGGCTCCGGGGGCAG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72456294 40 - 132174527 GTTCTGCCACCAAGGGCCCTACTGGGGGCTCTGTACCTGG
i calJac3.chr10             C 0 I 3
s aotNan1.NW_018502759v1     9389027 40 +  14477005 GCTCCACCTCCGAGGGCCCTGCTGGGGGCTCTGGGGGTGG
i aotNan1.NW_018502759v1    I 304 C 0
s otoGar3.GL873533          30951582 40 +  31380117 GTTCCACCTCCGAGGGCCCTGCAGGGGGCGCTGGGGATGG
i otoGar3.GL873533          I 18 C 0
s canFam3.chr9               5826700 40 -  61074082 GCTCCTCCTCCAAGGGCCTGGCTGGGGGCTCCTGGGCTGG
i canFam3.chr9              I 9 C 0
s dasNov3.JH564958            404350 40 -    584178 GTTCCACCTCAGAGTACCCAGCCGGGGGCTCCTGGGGTGG
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1010343 209 -   1842816 I

a score=411307.000000
s hg38.chr15_KI270851v1_alt   255661 45 +    263054 GGGTTCAGCT-----------GAGAAAGGAAGCAGATAATAAGGGCCTCTGGATTC-------
s panTro5.chr15             72199369 45 -  83230942 GGGTTCAGCT-----------GAGAAAGGAAGCAGACAATAAGGGCCTCTGGATTC-------
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71436169 45 -  99763055 GGGTTCAGCT-----------GAGAAAGGAAGCAGACAATAAGGGCCTCTGGATTC-------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       15450 45 -    281578 GGGTTCAGCT-----------GAGAAAGGAAGCAGATAATAAGGGCCTCTGGATTC-------
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8432378 45 + 169600520 GGGTTTAGCT-----------GAGAAAGGAAGCAGACAATAAGGGCCTCTGGATTC-------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91231231 45 - 171882078 GGGTTCAGCG-----------GAGAAAGGAAGCAGGCAATAAGGCCCTCTGGATTC-------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      412521 45 -   9617498 GGGTTCAGTG-----------GAGAAAGGAAGCAGGCAATAAGGCCCTCTGGATTC-------
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4966324 45 +  14009840 GGGTTCAGCT-----------GAGAAAGGAAGCAGGCAATAAGGGCCTCTGGATTC-------
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7579626 45 +  58131712 GGGCTCAGCT-----------GAGAAAGGAAGCAGACAATAAGGGCCTCTGGATTC-------
i chlSab2.chr26             C 0 I 47
s manLeu1.NW_012109919v1      118688 45 +   7069685 GGGTTCAGCT-----------GAGAAAGGAAGCAGGCAATAAGGCCCTCTGGATTC-------
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3039244 45 +   3749464 GGGTTCAGCT-----------GAGAAAGGAAGCAGACAATAAGGGCCTCTGGATTC-------
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72456337 42 - 132174527 ---TTCAGCT-----------GAAAAAGGAAGCAGAATATAAGGTCCTCTGGCTTC-------
i calJac3.chr10             I 3 C 0
s cebCap1.NW_016107745v1     1010552 45 -   1842816 GGGTTCAGCT-----------GAGAAAGGAAGCAGAGAGTAAGGGCCTCTGGATTC-------
i cebCap1.NW_016107745v1    I 209 C 0
s aotNan1.NW_018502759v1     9389067 45 +  14477005 GGGCTCAGCT-----------GAGAAAGGAGGCAGACAATAAGGGCCTCTGGATTC-------
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30951622 45 +  31380117 GGCTTCAGCT-----------GAGGAAGAAGAGCATGGTTAAGGGCCTCTGGATTC-------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5826740 56 -  61074082 GGGCACCACTGTGGGGAGCAGGGGGAGGGGGACACACGCTAGGGGCCTCTCACCTC-------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            404390 52 -    584178 GGGTACAGCT-----------GAGAAAGGAAGCACATAATAAAGGCTTCTCACTTCTGTGTTC
i dasNov3.JH564958          C 0 C 0

a score=12198.000000
s hg38.chr15_KI270851v1_alt   255706 2 +    263054 TC
s panTro5.chr15             72199414 2 -  83230942 TC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71436214 2 -  99763055 TC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       15495 2 -    281578 TC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8432423 2 + 169600520 Tc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91231276 2 - 171882078 TC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      412566 2 -   9617498 TC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4966369 2 +  14009840 TC
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      118733 2 +   7069685 TC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3039289 2 +   3749464 Tc
i colAng1.NW_012115677v1    C 0 C 0
s otoGar3.GL873533          30951667 2 +  31380117 TC
i otoGar3.GL873533          C 0 I 538
s canFam3.chr9               5826796 2 -  61074082 TG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            404442 2 -    584178 TC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9389112 0 +  14477005 C
e cebCap1.NW_016107745v1     1010597 0 -   1842816 C
e chlSab2.chr26              7579671 47 +  58131712 I
e calJac3.chr10             72456379 0 - 132174527 C

a score=-51121.000000
s hg38.chr15_KI270851v1_alt   255708  7 +    263054 GG--------------------AAAAG
s panTro5.chr15             72199416 24 -  83230942 aaacaaaacaaa---acaaaacaaaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71436216 19 -  99763055 AA-----ACAAA---ACAAAACAAAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       15497  8 -    281578 GA-----A--------------AAAAG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8432425 11 + 169600520 aa----------------aaacaaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91231278  7 - 171882078 aa--------------------aaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      412568  7 -   9617498 aa--------------------aaaaa
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4966371  9 +  14009840 aa----------------aa--aaaaa
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      118735  7 +   7069685 aa--------------------aaaaa
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3039291 11 +   3749464 aa----------------aaacaaaaa
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72456379 12 - 132174527 ---------------TAAAGAAAAAAA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1010597 12 -   1842816 ---------------TCAAAATAAAAA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9389112 11 +  14477005 ---------------TCAAAACAAAG-
i aotNan1.NW_018502759v1    C 0 I 1
s canFam3.chr9               5826798  7 -  61074082 ----------TGCCTTC----------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            404444  1 -    584178 ---------------T-----------
i dasNov3.JH564958          C 0 C 0
e otoGar3.GL873533          30951669 538 +  31380117 I
e chlSab2.chr26              7579671 47 +  58131712 I

a score=32779.000000
s hg38.chr15_KI270851v1_alt   255715 6 +    263054 AAAAAA
s panTro5.chr15             72199440 6 -  83230942 aaaaAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71436235 6 -  99763055 AAAAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       15505 6 -    281578 AAAAAC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8432436 6 + 169600520 caaaac
i rheMac8.chr7              C 0 I 26
s macFas5.chr7              91231285 6 - 171882078 caaaac
i macFas5.chr7              C 0 I 12
s macNem1.NW_012017799v1      412575 6 -   9617498 caaaac
i macNem1.NW_012017799v1    C 0 I 12
s cerAty1.NW_012001627v1     4966380 6 +  14009840 aaaaca
i cerAty1.NW_012001627v1    C 0 I 12
s manLeu1.NW_012109919v1      118742 6 +   7069685 aaaaaa
i manLeu1.NW_012109919v1    C 0 I 15
s colAng1.NW_012115677v1     3039302 6 +   3749464 caaaac
i colAng1.NW_012115677v1    C 0 I 29
s calJac3.chr10             72456391 6 - 132174527 CAAAAA
i calJac3.chr10             C 0 I 2
s cebCap1.NW_016107745v1     1010609 6 -   1842816 CAAAAA
i cebCap1.NW_016107745v1    C 0 I 5
s otoGar3.GL873533          30952207 6 +  31380117 AAAAAC
i otoGar3.GL873533          I 538 C 0
s canFam3.chr9               5826805 6 -  61074082 AAAAAA
i canFam3.chr9              C 0 I 2
s dasNov3.JH564958            404445 6 -    584178 AAAAAC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9389123 1 +  14477005 I
e chlSab2.chr26              7579671 47 +  58131712 I

a score=1680596.000000
s hg38.chr15_KI270851v1_alt   255721 225 +    263054 CCTCCTCTTGGTCCACAGCTCCT--CTCAGG-------CTCCTC------AAA-CTTGGCCTCACTGCTAATGATTCCTCACACCCAGATGGTAGCCAGTCTTCCAGAG---------------------------------------------------------CACTTTCAGA---------GAAAG-----------------------AGCACTGCG-----GGTGGCTGACAACGGG---------ccctctttgctgatgggg--------acactgaggctcattgagatgacaagact-------------------------tgccgtctcctggc-aCAGACCTCTTTCCCTCTGCCTCAA-AGCCCT
s panTro5.chr15             72199446 226 -  83230942 CGTCCTCTTGGTACACAGCTCCT--CTCAGG-------CTCCCC------AAA-CTTGGCCTCACTGCTAATGATTCCTCACAGCCGGATGGTAGCCAGTCTTCAAAGC---------------------------------------------------------CACTTTCAGA---------TAGAG-----------------------AGAACTGTG-----GGTGGCTGACAATGGG---------CCCCCTTTGCTGATAAAG--------ACCCTGAGGCTCATGGAGATGACAAGACT-------------------------TGCCGTCTCCTAGC-ACAGACCTCTTTCCCTCTGCCTCCCTCTCCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71436241 226 -  99763055 CGTCCTCTTGGTACACAGCTCCT--CTCAGG-------CTCCCC------AAA-CTTGGCCTCACTGCTAATAATTCCTCACAGCCGGATGGTAGCCAGTCTTCAAAGC---------------------------------------------------------CACTTTCAGA---------TAGAG-----------------------AGAACTGTG-----GGTGGCTGACAATGGG---------CCCCCTTTGCTGATAAAG--------ACCCTGAGGCTCATGGAGATGACAAGACT-------------------------TGCCGTCTCCTAGC-ACAGACCTCTTTCCCTCTGCCTCCCTCTCCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       15511 233 -    281578 CCTCCTCTTGGCGCACAGCTCCT--CTCAGG-------CTCCTC------AAA-CTTGGCCTCACTGCTAATGATTCCTCGCACCCAGATGGTAGCCAGTCTTCCAAAG---------------------------------------------------------CACTTTCAGA---------GAAAG-----------------------AGCACTGCG-----GGTGGCTGACAACGGG---------CCCTCTTTGCTGATGGGGACACTGACACACTGAGACTCATTGAGATGACAAGACT-------------------------CGCCGTCTCCTGGC-ACAGATCTCTTTCCCTCTGCCTCAA-AGCCCT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8432468 224 + 169600520 CCTCCTCTTGGTGCACAGCTCCT--CTCAGG-------CTCCCC------AAA-CTTGGCCTCACTGCTAATGATTCCTCGCACCC-GATGGTAGCCAATCTTCCAAAC---------------------------------------------------------CACTTTCAGA---------TGGAG-----------------------AGCACTGTG-----GGTGACTGACAACGGG---------CCCCCTTTGCTGATGGGG--------ACACTCAGGCTCATGGAGATAACAAGACT-------------------------TGTTGTTTCCTGGC-ACAGACCTCTTTCCTTCTGCCTCAA-AGCCCT
i rheMac8.chr7              I 26 C 0
s macFas5.chr7              91231303 225 - 171882078 CCTCCTCTTAGTGCACAGCTCCT--CTCAGG-------CTCCCC------AAA-CTTGGCCTTACTGCTAATAATTCCTCGGACTCAGATGGTAGGCAATCTTCTGAAC---------------------------------------------------------CACTTTCAGA---------TAGAG-----------------------AGCACTGTG-----GGTGGCTGACAATGGG---------ccccctttgctgatgggg--------acactgaggctcatggagacgacaagact-------------------------tgcTATCTCCTGGC-ACAGACCTCTTTTCCTCTGCCTCAA-AGCCCT
i macFas5.chr7              I 12 C 0
s macNem1.NW_012017799v1      412593 225 -   9617498 CCTCCTCTTAGTGCACAGCTCCT--CTCAGG-------CTCCCC------AAA-CTTGGCCTTACTGCTAATAATTCCTCGGACTCAGATGGTAGGCAATCTTCTGAAC---------------------------------------------------------CACTTTCAGA---------TAGAG-----------------------AGCACTGTG-----GGTGGCTGACAATGGG---------ccctctttgctgatgggg--------acactgaggctcatggagacgacaagact-------------------------tgcTATCTCCTGGC-ACAGACCTCTTTTCCTCTGCCTCAA-AGCCCT
i macNem1.NW_012017799v1    I 12 C 0
s cerAty1.NW_012001627v1     4966398 225 +  14009840 CCTCCTGTTGGTGCACAACTCAT--CTCAGG-------CTCCCC------AAA-CTTGGCCTCACTGCTAATAATTCCTCGCATCCGGATGGTAGCCAATCTTCTGAAC---------------------------------------------------------CACTTTGAGA---------TACAG-----------------------AGCACTGTG-----GGTGGCTGACAATGGG---------ccccctttgctgatgggg--------acactgaggcttacggagatgacaagact-------------------------tgctgtctcctggc-aCAGACCTCTTTCCCTCTGCCTCAA-AGCCCT
i cerAty1.NW_012001627v1    I 12 I 27
s chlSab2.chr26              7579718 229 +  58131712 CCTCCTCTTGATTCACAGCTCCT--CTCAGG-------CTTCCC------AAC-CTTGGCCTCACTGCTAATGATTCCTCACATCC-AATGGT-GCCAAT-TTCCAAGC---------------------------------------------------------CACTTTCAGA---------TAGAG-----------------------AGCACTGTG-----GGTGGCTGACAACGGGCACTCc--tccctctttgctgatgggg--------accctgaggctcatggagatgacaaggct-------------------------tgcTGACTCCTGGC-ACAGACCACTTTCCCACTGCCTCAA-AGCCCT
i chlSab2.chr26             I 47 C 0
s manLeu1.NW_012109919v1      118763 225 +   7069685 CCTCCTGTTGGTGCACAACTCAC--CTCAGG-------CTCCCC------AAA-CTTGGCCTCACTGCTAATAATTCCTCGCATCCGGATGGTAGCCAATCTTCTGAAC---------------------------------------------------------CACTTTGAGA---------TAGAG-----------------------AGCACTGTG-----GGTGGCTGACAATGGG---------ccccctttgctgatgggg--------acactgaggctcatggagatgacaagact-------------------------tgctgtctcccggc-aCAGACCCCTTTCCCTCTGCCTCAA-AGCCCT
i manLeu1.NW_012109919v1    I 15 I 26
s colAng1.NW_012115677v1     3039337 225 +   3749464 CCTCCTCTTGGTGCACAGCTCCT--CTCAGG-------CTCCCC------AAA-CTTGGCCTCACTGCTAATGATTCCTCGCACCCGGATGGTAGCCAATCTTCCAAAC---------------------------------------------------------CACTTTCAGA---------TGGAG-----------------------AGCACTGTG-----GGTGACTGACAATGGG---------ccccatttgctgatgggg--------acactgaggctcacggagatgacaagact-------------------------tgctgtctcccggc-aCAGACCTCTTTCCCTCTGCCTCAA-AGCCCT
i colAng1.NW_012115677v1    I 29 C 0
s calJac3.chr10             72456399 227 - 132174527 CCTCCTTTTGGTGCACAG---CT--TTCACG-------CTCCCT------AAA-CTTGGCCTCACTGCTGACGATTCTTTGCACCC-GGTGGTAG-CAGACTTCCAAGC---------------------------------------------------------CACTTTCAGA---------TAGAG-----------------------AGCACTGTG-----GGTGGCTGACAACGGGCTCTCC--TCCCTCTTTGTTGACAGAG--------ACACTGAGGCTTATGGAGATTACAGGACT-------------------------TGTCATCTCCCAGC-ACAGACCTCTTTTCCTCTGTCTCAA-AGCCCT
i calJac3.chr10             I 2 C 0
s cebCap1.NW_016107745v1     1010620 230 -   1842816 ACTCTTCTGGGTGCACAGCTCCT--CTCAGG-------CTCCTC------AAA-CCTGGCCTCACTGCTAATGATTCCTCTCACCCAAATGGTAGCCAGTCTTCCAAGC---------------------------------------------------------CACTTTCAGA---------TAGAG-----------------------AGCACTGTG-----GGTGGCTGACAAAAGGCAC-Cc--tccctcttt-ctgatgggg--------acactgaggctcatggagattacgagact-------------------------tgctgtctcctagc-aCAGACCTCTTTCCCTCTGCCTCAA-AGCCCT
i cebCap1.NW_016107745v1    I 5 C 0
s aotNan1.NW_018502759v1     9389124 230 +  14477005 CCTCCGCTTGGTCCACAGCTCCT--CTTAGG-------CTCCCC------ACA-CTTGGCCTCCCTGCTAATGATTCCTTGCACCCGGATGGTAGCCAGTCTTCCAAGT---------------------------------------------------------CACTACTCAA---------TAAAG-----------------------ACAACTGTG-----GGTGGCTGACAACCGGCACTCc--tccctctttgctgatgggg--------acactgaggctcatagagatgacaagact-------------------------tgccATCTTCTGGC-ACAAACCTCTTTCCCTCTGCCTCAA-TGCC--
i aotNan1.NW_018502759v1    I 1 C 0
s otoGar3.GL873533          30952213 236 +  31380117 CCTCTTTATGGTCTAAAGCTCTT--CAC------------CCCA------AAT-CTTGGCTTCTTGGATAAGTATTCCTCACATTCCTATGATGGTCACTCTTTCAAGC---------------------------------------------------------CACTTTCAAA---------TAGTGTTTTTAC----------------ATTATTGTGCTAAAGACAATTGTGGATGGGCATT-----CTCCCTCTGTAAATGTGG--------ACACAGAGTCTCAAGGGAGACACGAGACT-------------------------TGCCACCTCCTAGC-ACAGACCTCTTTCCCTTTGCCCCAA-AGCTCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5826813 224 -  61074082 CCTCTTCTTGATCCACAGCTCCT--AACTGGGCCTCCTCGCCCC------AAACCTTGGCTTCCTGGCTCACAATCCCTCACCCTCAGGGGATATGCACTCTTTCAAGA---------------------------------------------------------CACTTTTGAA---------AAGAGTTTTTAATATTTTTATGCTCAGGACAATTCGG-----AGTGGTTGCCAGCGGG---------C-------------------------ACACTG---------------CCCAACCT-------------------------GGCCAACTCCTAGT-ACGGACCTCTTTCCCTGGGCCACAG-TCCCCT
i canFam3.chr9              I 2 C 0
s dasNov3.JH564958            404451 331 -    584178 TCTCTTCTTGGTCCACAGCTCCTAATTCATG-------CTCCTCACCCCAAGT-CCTGCTTTCCTTGCTAATAATTCCTCACACCCATATGATGTTCAATATTCCAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGTTCTTTTATAGttctatactcaag-----------------------acaattctg-----gatggttgacagtgggtactccatcccctttttgcagatggag--------acaatgaaactcagagaaattataagacttgccaaaggtcacatagtaagtcagtgccaactcctggtaacagaactcTTTCCCCTTGGCCATA-ATC---
i dasNov3.JH564958          C 0 C 0

a score=15053.000000
s hg38.chr15_KI270851v1_alt   255946 3 +    263054 TCC
s panTro5.chr15             72199672 3 -  83230942 TCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71436467 3 -  99763055 TCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       15744 3 -    281578 TCC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8432692 3 + 169600520 TCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91231528 3 - 171882078 TCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      412818 3 -   9617498 TCC
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7579947 3 +  58131712 GCC
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3039562 3 +   3749464 TTC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72456626 3 - 132174527 TCC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1010850 3 -   1842816 TCC
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30952449 3 +  31380117 GCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5827037 3 -  61074082 TCC
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958            404782 0 -    584178 C
e aotNan1.NW_018502759v1     9389354 0 +  14477005 C
e manLeu1.NW_012109919v1      118988 26 +   7069685 I
e cerAty1.NW_012001627v1     4966623 27 +  14009840 I

a score=8281.000000
s hg38.chr15_KI270851v1_alt   255949 1 +    263054 A
s panTro5.chr15             72199675 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71436470 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       15747 1 -    281578 A
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8432695 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91231531 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      412821 1 -   9617498 A
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7579950 1 +  58131712 A
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      119014 1 +   7069685 A
i manLeu1.NW_012109919v1    I 26 C 0
s colAng1.NW_012115677v1     3039565 1 +   3749464 A
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72456629 1 - 132174527 A
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1010853 1 -   1842816 A
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30952452 1 +  31380117 A
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5827040 1 -  61074082 A
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958            404782 0 -    584178 C
e aotNan1.NW_018502759v1     9389354 0 +  14477005 C
e cerAty1.NW_012001627v1     4966623 27 +  14009840 I

a score=4487865.000000
s hg38.chr15_KI270851v1_alt   255950 558 +    263054 TCCACCCACCTCCCTGGGGCACTCTAAGCCACCCTCA-CAG--CCCTCTGATGCCAGTCCTGCTCCCAGGTCATGCCAGCCCCATCTTACCCATCTGGTTTTTGAGTTTGGACAAGCTCCTCTCCAGCTTCTCTACCCGACGCATATCTTGCTGCTTCTCTTTCTTTAATGTGCAAATCTGCCCAAAGCACAAGGGGAA-----------------AGGGCCCTGGAGAGAGG--------GGCTGGAGGCTGGA---------CAGGCTGCCCTCTCCC-----------TCTCTGCCCCCACCTCCACAAAGCCCAGACCCATGACCACCTCTGGCTGtact-----------------attcccattttacagatga-----------ccagaaagatccagtgacctatc-taatgt----GG-GGGGGCTGAAGGGTCAGATCTCACCTCCTGCGACATTTTTCTCATCCTCTGCTGCCACCGGGCCCTCTCTCCTTTTAGATGT-TCAGCATATTCATGTCTTTCTAATTGGAGTTGTTGAAATGACTCCTTCAACTGCAAGAATGGGCACAGAAGTTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGTCATCTTCCTTC
s panTro5.chr15             72199676 558 -  83230942 TCCACCCACCTCCCTGGGGCATTCTAAGCCACCCTCA-CAG--CCCTCTGATGCCAGTCCTGCTCCCAGGTCACGCCAGCCCCATCTTAACCATCTGGTTTTTGAGTTTGGACAAGCTCCTCTCCAGATCCTCTACCCGATGCGTATAATGCTCCTTCTCTGTCTTCAGTGTGTAAACCTGCCCAAAGCACAGGGGGAA-----------------AGGGCCCTGGAGAGAGG--------GGCTGGTGGCTGGA---------CAGGCTGCCCTCTCCC-----------TCTCTGCCCCCACCTCCACAAAGCCCAGACCCATGACCACCTCTGGCTCtact-----------------attcccattttacagatgc-----------ccagaaagatccagtgacctatc-taatgt----TG-GGGGGCTGAAGGGTCAGATCTCACCTCCTGCGACATTTTTCTCATCCTCTGCTGCCACCGGGCCCTCTCTCCTTTTATTTGT-TGAGCATAGTTATCTCTCTGTAATTGGACTTGTTGAAACGACTCCTTCAACTGCAAGAATGGGCACAGAAGTTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGTCATCTTCCTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71436471 558 -  99763055 TCCACCCACCTCCCTGGGGCATTCTAAGCCACCCTCA-CAG--CCCTCTGATGCCAGTCCTGCTCCCAGGTCACGCCAGCCCCATCTTAACCATCTGGTTTTTGAGTTTGGACAAGCTCCTCTCCAGATCCTCTACCCGATGCGTATAATGCTCCTTCTCTGTCTTCAGTGTGTAAACCTGCCCAAAGCACAGGGGGAA-----------------AGGGCCCTGGAGAGAGG--------GGCTGGTGGCTGGA---------CAGGCTGCCCTCTCCC-----------TCTCTGCCCCCACCTCCACAAAGCCCAGACCCATGACCACCTCTGGCTCtact-----------------attcccattttacagatgc-----------ccagaaagatccagtgacctatc-taatgt----GG-GGGGGCTGAAGGGTCAGATCTCACCTCCTGCGACATTTTTCTCATCCTCTGCTGCCACCGGGCCCTCTCTCCTTTTATTTGT-TGAGCATAGTTATCTCTCTGTAATTGGACTTGTTGAAACGACTCCTTCAACTGCAAGAATGGGCACAGAAGTTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGTCATCTTCCTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       15748 557 -    281578 TCCACCCACCTCCCTGGGGCATTCTAAGCCACCCTCA-CAG--CCCTCTGATGCCAGTCCTGCTCCCAGGTCATGCCAGCCCCATCTTACCCATCTGGTTTTTAAGTTCGGACAAGCTCCTCTCCAGCTCCTCTACCCGATGAGTATAATGCTCCTTCTCTGTCTTCAGTGTGTAAACCTGCCCAAAGCACA-GGGGAA-----------------AGGGCCCTGGAGAGAGG--------GGCTGGTGGCTGGA---------CAGGCTGCCCTCTCCC-----------TCTCTGCCCCCACCTCCACAAAGCCCAGACCCATGACCACCTCTGGCTCTACT-----------------ATTCCCATTTTACAGATG------------CCAGAAAGATCCAGTGACCTATC-TAATGT----GG-GGGGGCTGAAGGGTCAGATCTCACCTCCTGCGACATTTTTCTCATCCTCTGCTGCCACAGGGCCCTCTCTCCTTTTATACGTATCAGCATACTCATCTTTTTCTAATTGGACTTGTTCAAATGACTTCTTCAACTGCAAGAATGGGCACAGAAGTTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGTCATCGTCCTTC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8432696 559 + 169600520 TCCACCCACCTCCCTGGGGCATTCTAAGCCACCCCCA-GAGCCCCCTCCGATGCCAGGCCTGCTCCCAGGTCACACCAGCCCCATCGTACCCATCTGGTTTTTTAGTTTCGACAAACTCCTCTCCAGCTTCTCTACCAGACGCATGTGATGCTGCTTCTCCTTCTTTAGTGTGCAAACCTGCCCAAAGCACAGGGATAA-----------------AGGGCCCTGGAGAGAGG--------GGCTGGTGGCTGGA---------CAGGCTGCCATCTCCC-----------TCTCTGCCCCCACCTCCACAAAGCCCCGACCCATGACCACCTCTGGCTGTA-T-----------------ATTCCCATGTTACAGATGC-----------CCAGAAACATCCAGTGACCTATC-TAAGGT----GGCG-GGGCTGAAGGGTCAGATCTCACCTCCTGGGACATTTTTCTCATCCTCTGCTGCCACCGGGCCCTCTCTCCTTTTAGATGT-TGAACATATTCGTCTCTCTCTAGATGGGCTTGTTTGAGTGAATCCTTCATCTGCAAGAATGGGCACAGAAGTTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGTCATCTTCCTTC
i rheMac8.chr7              C 0 I 15
s macFas5.chr7              91231532 549 - 171882078 TCCACTCACCTCCCTGGGGCACTCTAAGCCACCCCCA-GGG--CCGTCTGATGCCAGGCCTGCTCCCAGGTCATGCCAGCCCCATCTTACCCCTCTGGTTTTT--GTTTGGACAAGCTCCTCTCCAGCTTCTCTACCCGACGTGTATCATGCTTCTTCTCCTTCTTCAATGTGCAAACCTGCCCAAAGCACGGGGGCAA-----------------AGGGCCCTGGAGAGAGG--------GACTGGTGGCTGGA---------CAGGCTGCCATCTCCC-----------TCTCTGCTCCCACCTCCACAAAG------CCCATGACCACCTCTGGCTGTACT-----------------ATTTTCATTTTACAGATGC-----------CCAGAAAGATCCAGTGACCTATC-GAAGGT----AG-G-GGGCTGAAGGGTCAGATCTCACCTCCTGTGACATTTTCCTCATCCTCTGCTGCCACCAGGCCCTCTCTCCTTTTATGTGT-TGAGCATATTCATCTCTCTCTAGCTGGACTTGTTTAAGCAACTCCTTCAACTTCAAGAATGGGCAGAGAAGTTAGGAAGGGCCGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGTCATCTTCCTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      412822 549 -   9617498 TCCACTCACCTCCCTGGGGCACTCTAAGCCACCCCCA-GGG--CCGTCTGATGCCAGGCCTGCTCCCAGGTCATGCCAGCCCCATCTTACCCCTCTGGTTTTT--GTTTGGACAAGCTCCTCTCCAGCTTCTCTACCCGACGTGTATCATGCTTCTTCTCCTTCTTCAATGTGCGAACCTGCCCAAAGCACGGGGGCAA-----------------AGGGCCCTGGAAAGAGG--------GGCTGGTGGATGGA---------CAGGCTGCCATCTCCC-----------TCTCTGCTCCCACCTCCACAAAG------CCCATGACCACCTCTGGCCGtact-----------------attcccattttacagatgc-----------ccagaaagatccagtgacctatc-gaaggt----AG-G-GGGCTGAAGGGTCAGATCTCACCTCCTGTGACATTTTCCTCATCCTCTGCTGCCACCAGGCCCTCTCTCCTTTTATGTGT-TGAGCATATTCATCTCTCTCTAGCTGGACTTGTTTAAGCAACTCCTTCAACTGCAAGAATGGGCACAGAAGTTAGGAAGGGCCGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGTCATCTTCCTTC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4966650 555 +  14009840 TACACCCACCTCCCTGGGGCACTCTAAGCCACCCCCA-GGG--CCCTCTGATGCCAGGCCTGCTCCCAGGTCATGCCAGCCCCATCTTACCCATCTGGTTTTT--GTTTGGACAAGCTCCTCTCCAGCTTCTCTACCCAACATGTATCATGCTTCTTCTCCTTCTTCAATGTGCAAACCTACCCAAAGCACGGGGGCAA-----------------AGGGCCCTGGAGAGAGG--------GGCTGGTGGCTGGA---------CAGGCTGCCATCTCCC-----------TCTCTGCTCCCACCTCCACAAAGGCCAGACCCATGTCCACCTCTGGCTGtact-----------------attcccattttacagatgc-----------ccagaaagatccagtggcctatc-aaaggt----ag-g-gagctgaagggtcagagcTCACCTCCTGTGACATTTTCCTCATCCTCTGCTGCCACCAGGCCCTCTCTCCTTTTATATGT-TGATCATATTCATCTCTCTCTAGCTGGGCTTGTTTAAGCAACTCCTTCAACTGCAAGAATGGGCACAGAAGTTAGGAAGGGCTGTCACCGGTCCTCACCTGCTCCTGGCCACCTGGGGTCATCTTTCTTC
i cerAty1.NW_012001627v1    I 27 C 0
s chlSab2.chr26              7579951 554 +  58131712 TCCACCCACCTCCCTGGGGCATTCTAAGCCA-CCCCA-CAG--CCCTCTGATGCCAGTCCTGCTCCCAGGTCACACCAGCCCCATCTTACCTATCTGGTGTTTGAGTTCGGACACGGTCCTCTCCAGCTCCTGTATCCGATGTATGTCACGCATCTTCTCCTCCTTCAATGTGCGAGCCTGCCCAAAGCACAGGGGGAA-----------------GGGGCCCTGGAGAG-GG--------GGCTGGTGGCTGGA---------CAGGCTACCATCTTCC-----------TCTCTGCCCCCACCTCCACAAAGCCCAGACCCATGACCACCTCTGGCTGTACT-----------------AGTCCCATTTTACAGATGC-----------CCAGAAAGACCCAGTGACACATC-TAAGGT-----G-G-GGGCTGAAGGGTCAGGTCTCACCTCCACCGACATTTTCCACATCCTCTCCTGCCACCGGGCCCTCTCTCCTTTTATATGT-TGAGCACACTCGTCTCTTTGCAGCTGGACTTGTTTCAATGACTCTGTTACCTGCAAGAATGGGCACAGAAGTGAGGAAGGGCTGTCACCGGTCCTCACCTGCTCCTGGTCACCTGGGGTCATCTTCCTTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      119015 555 +   7069685 TACACCCACCTCCCTGGGGCACTCTAAGCCACCCCCA-GGG--CCCTCTGATGCCAGGCCTGCTCCCAGGCCATGCCAGCCCCATCTTACCCACCTGGTTTTT--GTTTGGACAAGCTCCTCTCCAGCTTCTCTACCCATCATGTATCATGCTTCTTCTCCTTCTTCAAGGTGCGAACCTACCCAAAGCACGGGGGCAA-----------------AGGGCCCTGGAGAGAGG--------GGCTGGTGGCTGGA---------CAGGCTGCCATCTCCC-----------TCTCTGCTCCCACCTCCACAAAGGCCAGACCCATGTCCACCTCTGGCTGtact-----------------atccccattttacagatgc-----------ccagaaagatccagtggcctatc-aaaggt----AG-G-GGGCTGAAGGGTCAGATCTCACCTCCTGTGACATTTTCCTCATCCTCTGCTGCCACCAGGCCCTCTCTCCTTTTATATGT-TGATCATATTCATCTCTCTCTAGCTGGGCTTGTTTAAGCAACTCCTTCAACTGCAAGAATGGGCACAGAAGTTAGGAAGGGCCGTCACTGGTCCTCACCTGCTCCTGGCCAACTGGGGTCATCTTTCTTC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3039566 557 +   3749464 TCCACCCACCTCCCTGGGGCATTCTAAGCC-CCCCCA-CAG--CCCTCTGATGCCAGGCCTGCTCCCAGGTCATGCCAGCCCCATCTTACCCATCTGGTTTTTGAGCTTGGACAAGCTCCTCTCCAGCTTCTCTACCCGATGCATAACATCCTTCTTCTCTTTCTTCAAGGTGCGAATCTGCCCAAAGCACAGGGGGAA-----------------AGGGCCCTGGAGAGAGG--------GGCTGGTGGCTGGA---------CAGGCTGCCATCTCCC-----------TTTCTGCCCCCACCTCCACAAAGCCCAGACCCATGACCACCTCTGGCTGTACT-----------------ATTCCCATGTTACAGACAC-----------TTAGAAAGATCCAGTGACCTATC-TAAAAT----GG-GAGAGCTGAACGGTCAGACCTCACCTCCTGCGACATTTTTCTCATCCTCTCCTGCCACCGGGCCCTCTCTCCTTTTAGATGT-TGAGCATATTCATCTCTCTCGAGCTGGACTTGTTTCAGTGAATCCTTCATCTGCAAGAATGGGCACAGAAGTTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGTCATCTTCCTTC
i colAng1.NW_012115677v1    C 0 I 15
s calJac3.chr10             72456630 544 - 132174527 TCCACCCACCTCCCTAGGACATTCCAAACCACCCCCA-CAG--CCCTCTGGTGCCAGTCCTGCTCCCAGGTCACGCCAGTCACATCTTACCCAGCTGGTTCCTGAGGTGGGCAAGGCTCCTTTCCAGCTCCTGCATGTGATGTGCATCCTGCCTCTTCTCAAGCTTCAGTGTGAGAACCTGCCCAAAGCAC-GGGGGAA-----------------AGGGCCCTGAAGAGAGG--------GGCTGGTGGCTGGA---------CA-----------CCC-----------TCTCTG-CCCCACCTCCACAAAGCCCAGACTCATGGTCACCTCTGGCTGTGCA-----------------ATTCCTATTTCACAGACGC-----------CCAGAAAGATCCAGTGACCTATCTTAATTC-----A-G-GGTCTGAAGGGTCAGGTCTCACCTCCTGTGATATTTTCCGCATCCCCTGCTGCCACCGGAACCTCTCTCCTTTAAGATGT-TGACAACACTCATCTCTCTCGAGCTGCACCTGGTGAAGTGATGCCGTCATCTGTCAAAATGAACACAGAAGTTAGGAAGAGCTGTCACTGGTCCTCACCTGCTCATGGCCACCTGGGGTCATCTTCCTTC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1010854 554 -   1842816 GCCACCCACCTCCCTGGGGCACTCTAAGCCACCCCCA-CAG--CCATCTGATGCCAGTCCTGCTCCCTGGTCATGCCAGCCCCATCTTACCCAGATGGTTTTGTAGGTGGGCAAGGCTCCCCTTCAGCTCCTCGATTTTAATTGCATCCTGCCTTTTCTCCATTTTGAATATTTCAATCTGCCCAAAGCACAGGGGGAA-----------------AGGGCCCTGGAGAGAGG--------GGCTGGTGGCTGGA---------CAGGCTACCATCTCCC-----------TCTCTGCCCCCAGCTCCACAAAGCCCAGTCCCGTGACCACCCCTGGCTGGACT-----------------ATTCT--TTTTACAGATGC-----------CCAGGAAGATCCAGTGAGCTATC-TAAGGT-----G-G-GTGCTGAAGGGTCAGCTCTCACTTCTCCTGCCATTTTCAGCAATTGCTGCTGCCACCGCGCCCTCTCTGTTTTGAGCTGT-TGAGCGTATGCGTCTCTTTCTAGCTGAGCTTTCTTAAGACACTCTGTCACCTGCAAGTATGGACTCAGAAGTTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGCCATCTTCCTTC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9389354 538 +  14477005 --------AAATCCTGGGGCATTCTAAGCCACCCCCG-CAG--CCCTCTGACAAAAGTCCTGCTCCCAGGTCACCCCAGCCCCAGCTTACCCATCTGGTTCCTCAGTTCAGCCAAGCTTGTCTCCAGCTCCTGTACCCGACTCATGTTATGCTCCTTCTCCTCCCTCAATGTGTGCACCTGTCCAAAGCACAGCGGGAA-----------------A---------------G--------GGCTGGTGGCTGGA---------CAGGCTACCATCTCCC-----------TCTCTGCCCCCACCTCCACAAAGCCCAGACCCATGACCACCTCTGGTTGTGCT-----------------TCTcccattttacagatgc-----------ccacagagatcaagtgacctatc-taaggttgttgg-g-gagctgaagggtcaggtctcACCTGCTCTGATACTTGCTGCATCCTCTGCCGCCACATGGCACTCTCTCCTTTGAGATTT-TCTGCATATTTATCTCTCTCCATTTGGAGTTGTCTAACAGACTCCATTACCTGCAAGAATGGGTACAGAATTTAGGAAGGGCTGTCACTGGTCCTCACCTGCTCCTGGCCACCTGGGGTCATCTTCCTTC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30952453 569 +  31380117 TTTTTCTACCTCCTGAGGGCATTCCTAGCCA-CCTCA-CAG--TGCTCCGACA-CAATCCTCCTCCCAGGTCCCCTGAACCCCAGCTTACCTGTCTGGTTCCTCAGTTCAGCCAAGCTGGTCTCTAGCTCCCGCACCTGAGTCACACTCTGCTCCTTCTCCTCCTTCAATATGCGCATCTGTTCAGAGCACA-GGGCAA-----------------AGAACCACAGAGAGAGG--------GGCTGGTAGAAGGA---------CAGACCACCATCTCCCCAAAATGGAGATCTCT------ACCTCCATAAACCCCAAATACACACCCACCTCTGCCTGTGCTCCTCAGCAAGCCATGCAAGTCCCACTTTACAGATTC-----------CCA---AGATCAAGAGACTGATC-TCAGAT-----G-G-GGGCTGCAGGGTCAGGTCTCACCTTCTCTGACATTTGCTGCATCTTCTCCTGCCACATGGCATTATCTCCTTTCAGAGTC-TCTAAATAATGGTCCCTGTCCATCTGTAGTCGTTTCATCAGCTCAGTAAGCTGCAAGAATGGACTCAGAAATTAAGAGAGGCTGTCACTTG---TTACTTCTTCCTGGCCGCCTATGGTAACCCTCCTTC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5827041 545 -  61074082 TCCACCCACATCCTTAGGGCATTTGAAGGCATCCTCACCAG--CCCTCTGGCACCAATCCTGCTCCCAGATCCT-CCTGCCTCAGCTTACCTATCTGGTTCTTCAGTTCAGCCAAGTTGGCCTCCAACTCCTGCACCTGACTCATGCTGTGCTCCTTCTCTTCCCTCAATCTGTGCATCTGCCCAAATCACAGGGGGGA-----------------TGGGTACATGGGTGGGG--------GGAAGTAAG--------------------ACCATTGCCC-----------TCTCTATTCCCACCTATAAAAAT------TGCACAGCCACCTCTGGCTGCATA-----CCAAGTGATAGGATTCCCCTTTTACTGATGT-----------CCAGAAAGATCAAGCAGCC-----TAAGGT----GG-GGGCGCTGAA-GGTCACATCTCACCTGTTCAGACATCTGCTGCATCTTCTGCTGCCAAATGGCATTCTCCTCCTTCAGAGTC-TCTGCATACTGGTCTCTCTCCAGCTGCAGTTGCTTTAGTAAATCTCTCAGCTACAAAAAGGGGCACAGATGTTAGCAGGGGCTGCTGCTGGGCCTAACCAGCTTCTAAGCACCTAGGGCCATCCTTC---
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            404782 613 -    584178 ----ACCACCTCTCACAGACATTCTAAGCCATCCTCACCAG--CCCTCTGACACCACTTCTGCTCTCAGATTACTCCAGACCCAGCATACCTGTCTCATTCTTCAGTTTAGCCAAACTGGTCTCCAGTTCCTGCACCTGACACATGCTATGCTCCTTCTCCTCCCTCAGTGTTTGCATCTGTCCAAAGCACAGGGAGAAGGAATATATGGATATTGAGGAAAGGGGAGAGAGGAATGAATAGGATGGGGAATGGAACTTTAAATCTGGTTACGGTCTCCC-----------TTTCTACCCCATCTTCAAAAAAAACAAAAcatacaacccccattggccacccagcaaagcaacgaata--atacccattttacagctgtgaaaacagaggctagaaagatcaagtgacc--tc-tgggac----ag-cagttgagaagggtcagaCCTTACCTGCTCTGACAATTGCTGCACCTGCTTCTGCCAAATGGCACTCTCTTCCTTCAAAGTC-TCTGCGTATCTATCTCTCTCCAATTGCAGTTGCTTCAGGGATTCTGCCAGCTGTAGGAATAGGCACAGAAGTGAGGAGGGGCTGTCACTGGACCTCACCTGCGCCCAGTTACCTGGGGTTCTCCTCCTCC
i dasNov3.JH564958          C 0 C 0

a score=41632.000000
s hg38.chr15_KI270851v1_alt   256508 5 +    263054 CACAT
s panTro5.chr15             72200234 5 -  83230942 CACAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71437029 5 -  99763055 CACAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       16305 5 -    281578 CACAT
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              91232081 5 - 171882078 CACAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413371 5 -   9617498 CACAT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4967205 5 +  14009840 CACAT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7580505 5 +  58131712 TACAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      119570 5 +   7069685 CACAT
i manLeu1.NW_012109919v1    C 0 C 0
s calJac3.chr10             72457174 5 - 132174527 CACAT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1011408 5 -   1842816 CATAT
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9389892 5 +  14477005 CACAT
i aotNan1.NW_018502759v1    C 0 I 152
s otoGar3.GL873533          30953022 5 +  31380117 CACAC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5827586 5 -  61074082 CACAC
i canFam3.chr9              C 0 I 2
s dasNov3.JH564958            405395 5 -    584178 CACAC
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1     3040123 15 +   3749464 I
e rheMac8.chr7               8433255 15 + 169600520 I

a score=77827.000000
s hg38.chr15_KI270851v1_alt   256513 11 +    263054 AACTCCCTCAG
s panTro5.chr15             72200239 11 -  83230942 CCCTCCCTCTG
i panTro5.chr15             C 0 I 1
s panPan2.chr15             71437034 11 -  99763055 CCCTCCCTCTG
i panPan2.chr15             C 0 I 1
s gorGor5.CYUI01000141v1       16310 11 -    281578 CCCTCCCTCGG
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              91232086 11 - 171882078 CCCTCCCTCTG
i macFas5.chr7              C 0 I 1
s macNem1.NW_012017799v1      413376 11 -   9617498 CCCTCCCTCTG
i macNem1.NW_012017799v1    C 0 I 1
s cerAty1.NW_012001627v1     4967210 11 +  14009840 CCCTCCCTCTG
i cerAty1.NW_012001627v1    C 0 I 1
s chlSab2.chr26              7580510 11 +  58131712 CCCTCCCTCTG
i chlSab2.chr26             C 0 I 1
s manLeu1.NW_012109919v1      119575 11 +   7069685 CCCTCCCTCTG
i manLeu1.NW_012109919v1    C 0 I 1
s calJac3.chr10             72457179 11 - 132174527 CCCTCCCTCTG
i calJac3.chr10             C 0 I 1
s cebCap1.NW_016107745v1     1011413 11 -   1842816 CCCTCCCTCTG
i cebCap1.NW_016107745v1    C 0 I 1
s otoGar3.GL873533          30953027 11 +  31380117 CCTTCCCTCTG
i otoGar3.GL873533          C 0 I 1
s canFam3.chr9               5827593 11 -  61074082 CCTGCTCTCTG
i canFam3.chr9              I 2 I 1
s dasNov3.JH564958            405400 11 -    584178 TCCTCCCTCTG
i dasNov3.JH564958          C 0 I 1
e aotNan1.NW_018502759v1     9389897 152 +  14477005 I
e colAng1.NW_012115677v1     3040123 15 +   3749464 I
e rheMac8.chr7               8433255 15 + 169600520 I

a score=811352.000000
s hg38.chr15_KI270851v1_alt   256524 143 +    263054 AAAACCTCACCTGTGTCAGCTGCACTTTCAGTAGTGCCTCCTCCCGCATGGACTGCTCTAACTTCCACTCCG---TACCTG---CTTTACTGGGGCTGGACAACTGGATGGCAAAGAGTGAGAAGTTTCAATCTGGAGAGCCTGGGCAT
s panTro5.chr15             72200251 143 -  83230942 AAAACCTCACCCATGTTAGCTATGCCTTCAGCCGTGCCTTCTCCTGTATGGACTGCTCTAACTGCCACTCGA---CAGGTG---CTCTGCTGCGGCTCAAGAACTGGATGGCGAAGAGTGAGAAGTTCCAATCTGGGGAGCCTGGGACA
i panTro5.chr15             I 1 C 0
s panPan2.chr15             71437046 143 -  99763055 AAAACCTCACCCATGTTAGCTATGCCTTCAGCCGTGCCTTCTCCTGTATGGACTGCTCTAACTGCCACTCGA---CAGGTG---CTCTGCTGCGGCTCAAGAACTGGATGGCGAAGAGTGAGAAGTTCCAATCTGGGGAGCCCGGGACA
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01000141v1       16321 142 -    281578 AAAACCTCACCTGTGTCAGCTGCACTTTCAGTAGTGCCTGCTCCCGCACGGACTGCTCTAACCACCACTCCG---TACGTG---CTTTGCTGCGGCTGGA-AACTGGATGGTGAAGAGTGAGAAGTTTCAATCTGGAGAGCCTGGGCAT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433270 143 + 169600520 AAAATCTCACCTGTGTCAGCTGAGCTTTCAGCAGTGCCTGCTCCCGTAAGGACTGCTCTAACTTCCACTCCA---TACGTG---CTTTACTGCGGCTCGAGGACTGGATGGTGAAGAGTGAGAAGTTTCTATCTGGGGAACCTGGGCCA
i rheMac8.chr7              I 15 C 0
s macFas5.chr7              91232098 143 - 171882078 AAAACCTTACCCATGTCATGTGTGCATTCAGCAGTGCCTGCTCCCATATGGACCACTCTAACTGCCACTCAA---TAACAG---CTTTACTGTGGCTCGAGGTCTGGATGGTGAAGAGTGAGAAGTTTCAATCTTAGGAGCCTGGGCTA
i macFas5.chr7              I 1 C 0
s macNem1.NW_012017799v1      413388 143 -   9617498 AAAACCTTACCCATGTCATGTGTGCATTCAGCAGTGCCTGCTCCCATATGGACCACTCTAACTGCCACTCAA---TAACAG---CTTTACTGTGGCTCGAGGTCTGGATGGTGAAGAGTGAGAAGTTTCAATCTTAGGAGCCTGGGCCA
i macNem1.NW_012017799v1    I 1 C 0
s cerAty1.NW_012001627v1     4967222 141 +  14009840 AAAACCTTACGCATGTCACGTGTGCATTCAGCAGTGCCTG-TCCCGTATGGATCACTCTAACTGCCACTCGA---TAACC----CTTTACTGTGGCTCGAGGTCTGGATGGTGAAAAGTGAGAAGTTTCTATCTTAGGAGCCTGGGCCA
i cerAty1.NW_012001627v1    I 1 C 0
s chlSab2.chr26              7580522 139 +  58131712 AAAGCCTCACTTGTGTCACGTGTGCGTTCAGCAGCGCCCGCTCCTTTATGGTCTGCCGTAACTGCCGCTGGA---GGACTG---CTTCACTGCGGCTCGAGGACTGGATGGTGAAGAGTGAGAAGTTTTGATGTGGGGAGCCCGG----
i chlSab2.chr26             I 1 C 0
s manLeu1.NW_012109919v1      119587 140 +   7069685 AAAACCTTACGCATGTCACGTGTGCATTCAGCAGTGCCTG-TCCCGTATGGATCACTCTAACTGCCACTCGA---TAACC----CTTTACTGTGGCTCGAGGTCTGGATGGTGAAGAGTGAGAAGTTTCGATCCTAGGAGCCTGG-CCA
i manLeu1.NW_012109919v1    I 1 C 0
s colAng1.NW_012115677v1     3040138 143 +   3749464 AAAACCTCACCCGTGTCAACTGTGCTTTCAGCACTGCCTGCTCCCGTATGGACCGCTCTAACTTCCACTCCA---TATGTG---CTTTCCTGTGGCTCGAGAACTGGATGGTGAAGAGTGAGAAGTTTCTATATAGGGAACCTGGGCCA
i colAng1.NW_012115677v1    I 15 C 0
s calJac3.chr10             72457191 143 - 132174527 AAAGCCCCACCTGTGTCATGTGTGCTTTTAGCAGTGCCAGCTCCTTTCTGGAGTGCTGTAACTGCCGTTCGA---GGACTG---CTTCACAGTGGGGTGAGGACTGGATGGTGAAGAGTGAGAAGTTTCGATCAGGGGAGCCTGGGCCA
i calJac3.chr10             I 1 C 0
s cebCap1.NW_016107745v1     1011425 143 -   1842816 AAAGTCTCACCTCTGCCACCTGTGCTTTTAGCAGTTCCCGCTCCTGTAGAAACTGCTGTAACTGCTGCTCAA---GGACTG---CTCCACAGCGGCTCGAGGGCTGGATGGTGGAGAGGGAGAAGCTTCAATCTGGAGAGGCTGGGCCA
i cebCap1.NW_016107745v1    I 1 C 0
s otoGar3.GL873533          30953039 146 +  31380117 AAAGCCTCACCTCAGCCACCCGTTTCTCCAGCTTTGCCCGCTCCTCCAAGGCCTGTTGTAATTGCTGGTTGCTATTAAGGG---CTTCAGACGGGCTAGTGAACTAGATGGTGAAAAATGAGGAGGTCAGATCTGGGAAGCCCAAGCTA
i otoGar3.GL873533          I 1 C 0
s canFam3.chr9               5827605 146 -  61074082 AAGGCCTCACCTCCCCGACGTGGGCCTCCAGCTGTGTCCGCTCTTCCAGGGCCTGGTGTAACTCCTGGCTGC---TGTCAGGGCTTTTGGATTGACTAGAAAACTGGAGAATGGAAAAGGAGAAGGTTAGATGTGGGGAGCCCAGGCTG
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958            405412 143 -    584178 AAAACCTTACCTGCCCCACATGTATCTCCAGCTGTGCCCGCTCCTCCATGGCCTGCTGTAACTGCTCACTGC---TATCAGGGGTTCCAGGCTGGAGAGTTAACTAGATGGAGAAAAGC---AAGGTTAGATCTAGGGAGCTTAGGCTA
i dasNov3.JH564958          I 1 C 0
e aotNan1.NW_018502759v1     9389897 152 +  14477005 I

a score=403607.000000
s hg38.chr15_KI270851v1_alt   256667 56 +    263054 TTCC----ACACAGTGCCCCTT------AACAGGGCTAGG-GCTAGGCCCAATATACAACTC--GGTCA
s panTro5.chr15             72200394 56 -  83230942 TTCC----ACACAGTGCCCCTT------AAAAGGGCTAGG-GCTAGGCTCAATATACAACTC--GGTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71437189 56 -  99763055 TTCC----ACACAGTGCCCCTT------AAAAGGGCTAGG-GCTAGGCTCAATATACAACTC--GGTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       16463 54 -    281578 TTCC----ACACAGTGCCCCTT------AAAAGGGCTA-G-GCTAGGCCCAGTATA-AACTC--GGTCA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433413 56 + 169600520 TTCC----ATACAGTGCCCCTT------AAACAGGTTAGG-GCTAGGCTTAATATGCAACTC--GGTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232241 55 - 171882078 TTCC----ACACAGTGCCCCGT------AAAAGGGCT-GG-GCTTGACTCAATATACAACTT--GGTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413531 55 -   9617498 TTCC----ACACAGTGCCCCGT------AAAAGGGCT-GG-GCTTGGCTCAATATACAACTT--GGTCA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4967363 55 +  14009840 TTCC----ACACAGTGCCCCTT------AAAAGGGCT-GG-GCTTGGCTCAATATACAACTT--GGTCA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7580661 50 +  58131712 ----------GCAGTGCCCCTC------AAAAGGGCT-ATCGCTAGGCTCAATATACAACTC--AGTCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      119727 55 +   7069685 TTCC----ACACAGTGCCCCTT------AAAAGGGCT-GG-GCTTGGCTCAATATACAACTT--GGTCA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3040281 56 +   3749464 TTCC----ATACAGTGCCCCTT------AAACAAGCTAGG-GCTAGGCTGAATATACAACTC--GGTCA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457334 56 - 132174527 TTCC----ACACAATACCCCTT------CAAAGGGCTGGG-GCTAGGCTCAATATACAACTC--GGTCA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1011568 56 -   1842816 TTCC----ACACAGTGCCCCTT------AAAAGGGCTAGG-GCTGGGCTTCATACACAACTT--GGTCA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9390049 56 +  14477005 TTCC----ACACAGTGCCCCTT------AAAAGGGCTAGG-GCTAGGCTCAATGTACAACTC--GGTCA
i aotNan1.NW_018502759v1    I 152 I 1368
s otoGar3.GL873533          30953185 57 +  31380117 TTCC----ACACAGTGCTCCCC------CAA-GGGCTGGA-AGTGGCCTCAGCATACAACTCAGGGTCA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5827751 59 -  61074082 TTGCAGTAATGCACCCCACCCC------AAAAGGATCTGA-GCTGGGAT-AACGTACAATTT--GGCAT
i canFam3.chr9              C 0 I 2
s dasNov3.JH564958            405555 63 -    584178 TTCC----ACAGAATGACCCCTTCCCCAAGAGGGGTCTGA-ACTAGGATCAACATA-AACTTATGGTCA
i dasNov3.JH564958          C 0 C 0

a score=67014.000000
s hg38.chr15_KI270851v1_alt   256723 7 +    263054 GTAAAGA
s panTro5.chr15             72200450 7 -  83230942 GTAAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71437245 7 -  99763055 GTAAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       16517 7 -    281578 GTAAAGA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433469 7 + 169600520 GTAAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232296 7 - 171882078 GTAAAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413586 7 -   9617498 GTAAAGA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4967418 7 +  14009840 GTAAAGA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7580711 7 +  58131712 GTAAAGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      119782 7 +   7069685 GTAAAGA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3040337 7 +   3749464 GTAAAGA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457390 7 - 132174527 GTAAACA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1011624 7 -   1842816 GTAAAGA
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30953242 7 +  31380117 ATAAAGA
i otoGar3.GL873533          C 0 I 1908
s canFam3.chr9               5827812 7 -  61074082 ATACAGA
i canFam3.chr9              I 2 I 2
s dasNov3.JH564958            405618 7 -    584178 ATAAAGA
i dasNov3.JH564958          C 0 I 2798
e aotNan1.NW_018502759v1     9390105 1368 +  14477005 I

a score=16406.000000
s hg38.chr15_KI270851v1_alt   256730 4 +    263054 TCAT
s panTro5.chr15             72200457 4 -  83230942 TCAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71437252 4 -  99763055 TCAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       16524 4 -    281578 TCAA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433476 4 + 169600520 TCGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232303 4 - 171882078 TCAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413593 4 -   9617498 TCAA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4967425 4 +  14009840 TCAA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7580718 4 +  58131712 TCAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      119789 4 +   7069685 TCAA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3040344 4 +   3749464 TTGA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457397 4 - 132174527 TAAG
i calJac3.chr10             C 0 C 0
s otoGar3.GL873533          30955157 4 +  31380117 TCGA
i otoGar3.GL873533          I 1908 C 0
s canFam3.chr9               5827821 2 -  61074082 TC--
i canFam3.chr9              I 2 C 0
s dasNov3.JH564958            408423 4 -    584178 TCGA
i dasNov3.JH564958          I 2798 C 0
e aotNan1.NW_018502759v1     9390105 1368 +  14477005 I
e cebCap1.NW_016107745v1     1011631 0 -   1842816 C

a score=90850.000000
s hg38.chr15_KI270851v1_alt   256734 10 +    263054 GGCATTTCCA
s panTro5.chr15             72200461 10 -  83230942 GGCATTTCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71437256 10 -  99763055 GGCATTTCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       16528 10 -    281578 GGCATTTCCC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433480 10 + 169600520 GGCATTTCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232307 10 - 171882078 GGCATTTCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413597 10 -   9617498 GGCATTTCCA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4967429 10 +  14009840 GGCATTTCCA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7580722 10 +  58131712 GGCATTTCCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      119793 10 +   7069685 GGCATTTCCA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3040348 10 +   3749464 GGCATTTCCA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457401 10 - 132174527 GGCATGTCCA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1011631  4 -   1842816 ------TCAA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9391473 10 +  14477005 GGCATTTCCA
i aotNan1.NW_018502759v1    I 1368 C 0
s otoGar3.GL873533          30955161 10 +  31380117 GACATTTCTA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5827823 10 -  61074082 TACCTTTACA
i canFam3.chr9              C 0 I 1620
s dasNov3.JH564958            408427 10 -    584178 AGCATTTCCA
i dasNov3.JH564958          C 0 C 0

a score=103555.000000
s hg38.chr15_KI270851v1_alt   256744 12 +    263054 AGCCCATGGTCT
s panTro5.chr15             72200471 12 -  83230942 AGCCCATGGTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71437266 12 -  99763055 AGCCCATGGTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       16538 12 -    281578 AGCCCGTGGTCT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433490 12 + 169600520 AGTCTGTGGtct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232317 12 - 171882078 AGCCTGTGGTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413607 12 -   9617498 AGCCTGTGATCT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4967439 12 +  14009840 AGCCTGTGGTCT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7580732 12 +  58131712 AGCCCGTGGTCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      119803 12 +   7069685 AGCCTGTGGTCT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3040358 12 +   3749464 AGTCTGTGGTCT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457411 12 - 132174527 AGCCCGTGGTCT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1011635 12 -   1842816 GGCCCATGGTTT
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9391483 12 +  14477005 AGCCCATGGTCT
i aotNan1.NW_018502759v1    C 0 I 1779
s otoGar3.GL873533          30955171 12 +  31380117 AGCCAGTGATTC
i otoGar3.GL873533          C 0 I 4
s dasNov3.JH564958            408437 12 -    584178 AGCCCATGTTCT
i dasNov3.JH564958          C 0 I 3
e canFam3.chr9               5827833 1620 -  61074082 I

a score=61231.000000
s hg38.chr15_KI270851v1_alt   256756 10 +    263054 GGT-TTTTAAA-
s panTro5.chr15             72200483 10 -  83230942 GGT-TTTTAAA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71437278 10 -  99763055 GGT-TTTTAAA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       16550 10 -    281578 GGT-TTTTAAA-
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433502 10 + 169600520 ggt-ttttaaa-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232329 10 - 171882078 GGT-TTTTAAA-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413619 10 -   9617498 GGT-TTTTAAA-
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4967451 10 +  14009840 GGT-TTTTAAA-
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7580744 10 +  58131712 GGT-TTTTAAA-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      119815 11 +   7069685 GGTGTTTTAAA-
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3040370 10 +   3749464 GGT-TTTTAAA-
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457423 10 - 132174527 GGT-TTTGAAA-
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1011647 10 -   1842816 GGA-TTTTAAA-
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30955187 10 +  31380117 TGA-TTTCAAC-
i otoGar3.GL873533          I 4 C 0
s dasNov3.JH564958            408452 11 -    584178 TGT-TTTTATTA
i dasNov3.JH564958          I 3 C 0
e canFam3.chr9               5827833 1620 -  61074082 I
e aotNan1.NW_018502759v1     9391495 1779 +  14477005 I

a score=153282.000000
s hg38.chr15_KI270851v1_alt   256766 21 +    263054 AGAACACAGTAAAGTTGGAAC
s panTro5.chr15             72200493 21 -  83230942 AGAACTCAGAAAAGTTGGAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71437288 21 -  99763055 AGAACTCAGAAAAGTTGGAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       16560 21 -    281578 AGAACACAGTAAAGTTGGAAC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433512 21 + 169600520 agaactcagtaaagttggaag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232339 21 - 171882078 AGAACTCAGTCAAGTTGGAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413629 21 -   9617498 AGAACTCAGTCAAGTTGGAAG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4967461 21 +  14009840 AGAACTCAGTCAAGTTGGAAG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7580754 21 +  58131712 AGAACTCAGTAAAGTTGGAAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      119826 21 +   7069685 AGAACTCAGTCAAGTTGGAAG
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3040380 21 +   3749464 AGAACTCAGTAAAGTTGGAAG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457433 21 - 132174527 AGCACTTAGAAAAGTTGGAAT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1011657 21 -   1842816 ATAACTCAGTAAAGTTGGAAG
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30955197 20 +  31380117 AG-ACTAAATAAGAGTGGAAA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5829453 21 -  61074082 AGAACTTGGTAAGGGTGGGAG
i canFam3.chr9              I 1620 C 0
s dasNov3.JH564958            408463 21 -    584178 AAAACTCAATAAGGATACAAG
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9391495 1779 +  14477005 I

a score=3860.000000
s hg38.chr15_KI270851v1_alt   256787 1 +    263054 G
s panTro5.chr15             72200514 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71437309 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       16581 1 -    281578 G
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433533 1 + 169600520 g
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232360 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413650 1 -   9617498 G
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7580775 1 +  58131712 G
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      119847 1 +   7069685 A
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3040401 1 +   3749464 G
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457454 1 - 132174527 G
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1011678 1 -   1842816 A
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30955217 1 +  31380117 A
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5829474 1 -  61074082 A
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            408484 1 -    584178 A
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9391495 1779 +  14477005 I
e cerAty1.NW_012001627v1     4967482 0 +  14009840 C

a score=48971.000000
s hg38.chr15_KI270851v1_alt   256788 11 +    263054 GACAGGGAATG
s panTro5.chr15             72200515 11 -  83230942 GACAGGGAAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71437310 11 -  99763055 GACAGGGAAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       16582 11 -    281578 GACAGGGAATG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433534 11 + 169600520 gacagggaatg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232361 11 - 171882078 GACAGGGAAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413651 11 -   9617498 GACAGGGAAAG
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7580776 11 +  58131712 GACAAGGAAAG
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3040402 11 +   3749464 GACAGGGAAAG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457455 11 - 132174527 GACGGGGAAAG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1011679 11 -   1842816 GACAGGCAAAG
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30955218 10 +  31380117 -CAAGGGAAAG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5829475  2 -  61074082 ------GA---
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            408485 11 -    584178 CGTAGGCAAAG
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9391495 1779 +  14477005 I
e manLeu1.NW_012109919v1      119848  0 +   7069685 C
e cerAty1.NW_012001627v1     4967482  0 +  14009840 C

a score=363663.000000
s hg38.chr15_KI270851v1_alt   256799 58 +    263054 AGATTGAATTTATAGCTGGCTAACAGAGGCCCAGAGAGATCAGATAATATTGCT---ATTG
s panTro5.chr15             72200526 58 -  83230942 AGATCGAATTTACAGCTGGCTAACAGAGGCCCAGAGAGATCAGATAATATTGCT---ATGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71437321 58 -  99763055 AGATCGAATTTACAGCTGGCTAACAGAGGCCCAGAGAGATCAGATAATATTGCT---ATGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       16593 58 -    281578 AGATTGAATTTATAGCTGGCTAACAGAGGCCCAGAGAGATCAGATAATATTGCT---ATTG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433545 58 + 169600520 agatggaatttacagctggctaacagaggcccagagagatcagataatattgct---cTTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232372 57 - 171882078 AGACTGAATTTACAGCTGGCTAACAGAGGTCCAGAGAGATCAGATAATATTTCT----TTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413662 57 -   9617498 AGACTGAATTTACAGCTGGCTAACAGAGGTCCAGAGAGATCAGATAATATTGCT----TTG
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7580787 58 +  58131712 AGATTTAATTTACAGCTGGCTAATGGAGGCCCAGAGAGATcagataatattaca---attg
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3040413 58 +   3749464 AGATCGAATTTACAGCTGGCTCACAGAGGCCCAGAGAGATCAGATAATATTGCT---ATTG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457466 58 - 132174527 AGATCCAAGTGACAGCTGGCTAACGCAGGCTCGGAGAGATGACATCATACTGCT---CTTG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1011690 57 -   1842816 AGATCAAATTTACAGCTGGCTAACAGAGGCCCAGAGAGATCAGATCATATT-CT---ATTC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9393274 58 +  14477005 AGATCGAGTTTATAGCTGGCTAACAGAGGCCCAGAGAGATCAGATAACATTGCT---GTTG
i aotNan1.NW_018502759v1    I 1779 C 0
s otoGar3.GL873533          30955228 58 +  31380117 AGATCAAGTTTATGGCTGGCTAACAGAAGCCCAGAGGTATCAGATAtttctttt---tttg
i otoGar3.GL873533          C 0 I 1425
s canFam3.chr9               5829477 44 -  61074082 --------TTCAGAGCTGGCCAGCAGAGGCCCAGACAG------TGGCACTGCT---ATCA
i canFam3.chr9              C 0 I 4
s dasNov3.JH564958            408496 57 -    584178 ----TGAACTGAGAGTTGGTCAGCGGAGGTCCAGAAATATCAGATAATACTGCTTCCATTG
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012109919v1      119848  0 +   7069685 C
e cerAty1.NW_012001627v1     4967482  0 +  14009840 C

a score=161983.000000
s hg38.chr15_KI270851v1_alt   256857 31 +    263054 TTATTACCGTTATTATTACCACTGTTTGAAC-------
s panTro5.chr15             72200584 31 -  83230942 TTATTACTGTTATTATTACCACTGTTTGAAC-------
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71437379 31 -  99763055 TTATTACTGTTATTATTACCACTGTTTGAAC-------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       16651 31 -    281578 TTATTACTGTTATTATTACCACTGTTTGAAC-------
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433603 31 + 169600520 TTATTACTGTTATTActaccactgtctgaac-------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232429 31 - 171882078 TTATTACTGTTATTgctaccactgtttgaac-------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413719 31 -   9617498 TTATTACTGTTATTgctaccactgtttgaac-------
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7580845 31 +  58131712 ttattactgttattactaccactgtttgaac-------
i chlSab2.chr26             C 0 I 168
s colAng1.NW_012115677v1     3040471 31 +   3749464 TTACTACTGTTATTActaccactgtttgaac-------
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457524 31 - 132174527 GTATTACTCTTATGActaccactgtttgaac-------
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1011747 31 -   1842816 TTATTCCTGTTATTACTACCGCTGTTGGAAC-------
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9393332 31 +  14477005 TTATTACCATTATTgctaccactgtttgaac-------
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9               5829525 26 -  61074082 CTAGTAGCGTCAGAAC-ACTCCTGACC-----------
i canFam3.chr9              I 4 C 0
s dasNov3.JH564958            408553 35 -    584178 TTATTACTGCTATTCT---CATTGTCTGACCATctaac
i dasNov3.JH564958          C 0 C 0
e otoGar3.GL873533          30955286 1425 +  31380117 I
e manLeu1.NW_012109919v1      119848  0 +   7069685 C
e cerAty1.NW_012001627v1     4967482  0 +  14009840 C

a score=213263.000000
s hg38.chr15_KI270851v1_alt   256888 48 +    263054 TTTTATGGAGTGCTTCACCAGATACCATGCTAGC-------------AATCCCATTTAATC
s panTro5.chr15             72200615 48 -  83230942 CTTTATGGAGTGCTTCAACGAGTTCCATGCTAGC-------------Aatcccatttaatc
i panTro5.chr15             C 0 I 167
s panPan2.chr15             71437410 48 -  99763055 CTTTATGGAGTGCTTCAACGAGTTCCATGCTAGC-------------Aatcccatttaatc
i panPan2.chr15             C 0 I 167
s gorGor5.CYUI01000141v1       16682 48 -    281578 CTTTGTGGAATGCTTCAccaggtaccgtgctaac-------------aatcccatttaatc
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433634 47 + 169600520 ctttatggagtgtttcaccaggcaccatgctagc-------------aatcccattt-att
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232460 48 - 171882078 ttttattgagtgcttcaccagttaccatgctggc-------------aatcccatttaatc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413750 48 -   9617498 ttttattgagtgcttcaccagttaccatgctgga-------------aatcccatttaatc
i macNem1.NW_012017799v1    C 0 C 0
s colAng1.NW_012115677v1     3040502 48 +   3749464 ctttatggagtgcttcaccaggtatcatgctagc-------------aatcccctttaatt
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457555 46 - 132174527 ctttactga--gcttcaccaggtgctgtgctcac-------------tatcccatttgatc
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1011778 47 -   1842816 Ctttattgagtgtgtcaccaggtagtgtggtaac-------------gatcccatttaa-c
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9393363 48 +  14477005 ctttattgagtgcttcaccaggtaccatgctaac-------------aatcccatttaatc
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9               5829551 48 -  61074082 CTTCACAGAGCATGTCAGCAGCTGCcatgctaac-------------aatcacattcaagc
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            408588 61 -    584178 atttattaagtgctttaccaggcaccatgctaacattttacacacaaaaccccatttaatc
i dasNov3.JH564958          C 0 C 0
e otoGar3.GL873533          30955286 1425 +  31380117 I
e manLeu1.NW_012109919v1      119848  0 +   7069685 C
e cerAty1.NW_012001627v1     4967482  0 +  14009840 C
e chlSab2.chr26              7580876 168 +  58131712 I

a score=19218.000000
s hg38.chr15_KI270851v1_alt   256936 5 +    263054 CTCAC
s gorGor5.CYUI01000141v1       16730 5 -    281578 ctcgc
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433681 5 + 169600520 ctcac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232508 5 - 171882078 ctcgc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413798 5 -   9617498 ctcac
i macNem1.NW_012017799v1    C 0 C 0
s colAng1.NW_012115677v1     3040550 5 +   3749464 ctcgc
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457601 5 - 132174527 ctcac
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1011825 5 -   1842816 ctcac
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9393411 5 +  14477005 ctcat
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9               5829599 5 -  61074082 tttgc
i canFam3.chr9              C 0 I 158
s dasNov3.JH564958            408649 5 -    584178 ctcac
i dasNov3.JH564958          C 0 C 0
e otoGar3.GL873533          30955286 1425 +  31380117 I
e panPan2.chr15             71437458 167 -  99763055 I
e panTro5.chr15             72200663 167 -  83230942 I
e manLeu1.NW_012109919v1      119848 0 +   7069685 C
e cerAty1.NW_012001627v1     4967482 0 +  14009840 C
e chlSab2.chr26              7580876 168 +  58131712 I

a score=2955.000000
s hg38.chr15_KI270851v1_alt   256941 1 +    263054 A
s gorGor5.CYUI01000141v1       16735 1 -    281578 a
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433686 1 + 169600520 a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232513 1 - 171882078 a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413803 1 -   9617498 a
i macNem1.NW_012017799v1    C 0 C 0
s colAng1.NW_012115677v1     3040555 1 +   3749464 a
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457606 1 - 132174527 c
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1011830 1 -   1842816 a
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9393416 1 +  14477005 a
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9               5829762 1 -  61074082 A
i canFam3.chr9              I 158 C 0
s dasNov3.JH564958            408654 1 -    584178 a
i dasNov3.JH564958          C 0 I 166
e otoGar3.GL873533          30955286 1425 +  31380117 I
e panPan2.chr15             71437458 167 -  99763055 I
e panTro5.chr15             72200663 167 -  83230942 I
e manLeu1.NW_012109919v1      119848 0 +   7069685 C
e cerAty1.NW_012001627v1     4967482 0 +  14009840 C
e chlSab2.chr26              7580876 168 +  58131712 I

a score=6570.000000
s hg38.chr15_KI270851v1_alt   256942 2 +    263054 AC
s gorGor5.CYUI01000141v1       16736 2 -    281578 ac
i gorGor5.CYUI01000141v1    C 0 I 162
s rheMac8.chr7               8433687 2 + 169600520 ac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232514 2 - 171882078 ac
i macFas5.chr7              C 0 I 162
s macNem1.NW_012017799v1      413804 2 -   9617498 ac
i macNem1.NW_012017799v1    C 0 I 162
s colAng1.NW_012115677v1     3040556 2 +   3749464 ac
i colAng1.NW_012115677v1    C 0 I 162
s calJac3.chr10             72457607 2 - 132174527 ac
i calJac3.chr10             C 0 I 159
s cebCap1.NW_016107745v1     1011831 2 -   1842816 ac
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9393417 2 +  14477005 ac
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9               5829763 2 -  61074082 AG
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958            408655 166 -    584178 I
e otoGar3.GL873533          30955286 1425 +  31380117 I
e panPan2.chr15             71437458 167 -  99763055 I
e panTro5.chr15             72200663 167 -  83230942 I
e manLeu1.NW_012109919v1      119848 0 +   7069685 C
e cerAty1.NW_012001627v1     4967482 0 +  14009840 C
e chlSab2.chr26              7580876 168 +  58131712 I

a score=6600.000000
s hg38.chr15_KI270851v1_alt   256944 1 +    263054 C
s panTro5.chr15             72200830 1 -  83230942 C
i panTro5.chr15             I 167 C 0
s panPan2.chr15             71437625 1 -  99763055 C
i panPan2.chr15             I 167 C 0
s gorGor5.CYUI01000141v1       16900 1 -    281578 C
i gorGor5.CYUI01000141v1    I 162 C 0
s rheMac8.chr7               8433689 1 + 169600520 c
i rheMac8.chr7              C 0 I 162
s macFas5.chr7              91232678 1 - 171882078 C
i macFas5.chr7              I 162 C 0
s macNem1.NW_012017799v1      413968 1 -   9617498 C
i macNem1.NW_012017799v1    I 162 C 0
s colAng1.NW_012115677v1     3040720 1 +   3749464 C
i colAng1.NW_012115677v1    I 162 C 0
s calJac3.chr10             72457768 1 - 132174527 C
i calJac3.chr10             I 159 C 0
s cebCap1.NW_016107745v1     1011833 1 -   1842816 c
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9393419 1 +  14477005 c
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9               5829765 1 -  61074082 C
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958            408655 166 -    584178 I
e otoGar3.GL873533          30955286 1425 +  31380117 I
e manLeu1.NW_012109919v1      119848 0 +   7069685 C
e cerAty1.NW_012001627v1     4967482 0 +  14009840 C
e chlSab2.chr26              7580876 168 +  58131712 I

a score=7098.000000
s hg38.chr15_KI270851v1_alt   256945 1 +    263054 A
s panTro5.chr15             72200831 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71437626 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       16901 1 -    281578 A
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433852 1 + 169600520 A
i rheMac8.chr7              I 162 C 0
s macFas5.chr7              91232679 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413969 1 -   9617498 A
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7581044 1 +  58131712 A
i chlSab2.chr26             I 168 C 0
s colAng1.NW_012115677v1     3040721 1 +   3749464 A
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457769 1 - 132174527 A
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1011834 1 -   1842816 a
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9393420 1 +  14477005 a
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9               5829766 1 -  61074082 A
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958            408655 166 -    584178 I
e otoGar3.GL873533          30955286 1425 +  31380117 I
e manLeu1.NW_012109919v1      119848 0 +   7069685 C
e cerAty1.NW_012001627v1     4967482 0 +  14009840 C

a score=1820.000000
s hg38.chr15_KI270851v1_alt   256946 1 +    263054 -C
s panTro5.chr15             72200832 1 -  83230942 -C
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71437627 1 -  99763055 -C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       16902 1 -    281578 -C
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433853 1 + 169600520 -C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232680 1 - 171882078 -C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413970 1 -   9617498 -C
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7581045 1 +  58131712 -C
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3040722 1 +   3749464 -C
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457770 1 - 132174527 -C
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1011835 1 -   1842816 -c
i cebCap1.NW_016107745v1    C 0 I 164
s aotNan1.NW_018502759v1     9393421 1 +  14477005 -c
i aotNan1.NW_018502759v1    C 0 I 814
s otoGar3.GL873533          30956711 1 +  31380117 -C
i otoGar3.GL873533          I 1425 C 0
s canFam3.chr9               5829767 1 -  61074082 G-
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958            408655 166 -    584178 I
e manLeu1.NW_012109919v1      119848 0 +   7069685 C
e cerAty1.NW_012001627v1     4967482 0 +  14009840 C

a score=80712.000000
s hg38.chr15_KI270851v1_alt   256947 15 +    263054 AGATAGGAAGGGGA---A
s panTro5.chr15             72200833 15 -  83230942 AGATAAGAAGGGGA---A
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71437628 15 -  99763055 AGATAAGAAGGGGA---A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       16903 15 -    281578 AGATAGGAAGGGGA---A
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433854 15 + 169600520 AGATAGGAAGGGGA---A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232681 15 - 171882078 AGATAGGAAGGGGA---A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413971 15 -   9617498 AGATAGGAAGGGGA---A
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7581046 15 +  58131712 AGATAGAAAGGGGA---A
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3040723 15 +   3749464 AGATAGGAAGGGGA---A
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457771 15 - 132174527 AGATAGCAAGGGGG---A
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1012000 15 -   1842816 AGACAGGACGGGGG---A
i cebCap1.NW_016107745v1    I 164 C 0
s otoGar3.GL873533          30956712 15 +  31380117 AGATATGAAGAGGG---A
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5829768 18 -  61074082 GGATAAGGAGTGGAATTA
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958            408655 166 -    584178 I
e aotNan1.NW_018502759v1     9393422 814 +  14477005 I
e manLeu1.NW_012109919v1      119848  0 +   7069685 C
e cerAty1.NW_012001627v1     4967482  0 +  14009840 C

a score=102754.000000
s hg38.chr15_KI270851v1_alt   256962 23 +    263054 AAT--------TAATCTtttgttcacttttt
s panTro5.chr15             72200848 22 -  83230942 AAT--------TAATCTTTGGACC-CTTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71437643 22 -  99763055 AAT--------TAATCTTTGGACA-CTTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       16918 23 -    281578 AAT--------TAATCTtttgttcacttttt
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433869 23 + 169600520 AAT--------GAATCTtttgttcactgttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232696 23 - 171882078 AAT--------TAATATtttgttcacttttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      413986 23 -   9617498 AAT--------TAATATtttgttcacttttt
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7581061 23 +  58131712 AAT--------TAATCTtttgttcacttttt
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3040738 23 +   3749464 AAT--------TAATCTtttgtttacttcct
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457786 23 - 132174527 AGT--------TAATCTTTTGTTCAGTTTTT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1012015 23 -   1842816 AGT--------TAATCTTCTGCtcacttttt
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30956727 22 +  31380117 AAT--------TAATCTTTTGTTCAATTTT-
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5829786 31 -  61074082 AATTTGCATTGTGATCCTCTGTCCCTTTTTT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            408821 23 -    584178 AGT--------TTAACCttttttcatttttt
i dasNov3.JH564958          I 166 C 0
e aotNan1.NW_018502759v1     9393422 814 +  14477005 I
e manLeu1.NW_012109919v1      119848  0 +   7069685 C
e cerAty1.NW_012001627v1     4967482  0 +  14009840 C

a score=1819028.000000
s hg38.chr15_KI270851v1_alt   256985 355 +    263054 gaaaggatgatacatttgcatagtccaaaactcagaaggtacagaagggAAGTATCTCCCGGCCATCTTGTTGCTCTCTCCTGAATTTTTTATGAACCCTTGCAGACATGTTTTATGTATATTATCATAGTATGT------------------acacacacacacacacacacacacaTGCACACGtttcctctttctacagaaatggtaacatactaaaggtactcttctgtaccttCACAGTACAAGTACCCAATACCC-CACCTAGGACTTGCCCAAGACCACAGCCAGGTAAG-----GGCGGGGCAGGCACTTGGCCTCCAAGCTCTGCGTCCAGTGCTCACTCCA-CACAGTGACCC------CCAACTCACCCACAGCA
s panTro5.chr15             72200870 347 -  83230942 GAAATGATGATACATTCGCATAGTCCGAAACTCAGAAAGTACAGAAGGGAAGTATCTCCCAGCCACCCTATTGCTCTCTCCTGAATTTTTTATGAACACTTGCAGACATGTTTTATGTATATTATCATAGTATGT------------------acacaaacatgcacacacacacacaT--------TTCCTCTCTCTACAGAAATGGTAACATACTAAAGGTACTCTTCTGTACCTTCACAGTACAAGTACCCAATACCC-CACCTAGGACTTGGCCAAGACCACAGCCAGGTAAG-----GGCAGGGCAGGCACTTGGTCTCCAACCTCTGTGTCCAGTGCTCACTCCC-CAAAGTGCCCC------CCAACTCACCCACAGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71437665 347 -  99763055 GAAATGATGATACATTCGCATAGTCCGAAACTCAGAAAGTACAGAAGGGAAGTATCTCCCAGCCACCCTATTGCTCTCTCCTGAATTTTTTATGAACACTTGCAGACATGTTTTATGTATATTATCATAGTATGT------------------acacaaacatgcacacacacacacaT--------TTCCTCTCTCTACAGAAATGGTAACATACTAAAGGTACTCTTCTGTACCTTCACAGTACAAGTACCCAATACCC-CACCTAGGACTTGGCCAAGACCACAGCCAGGTAAG-----GGCAGGGCAGGCACTTGGTCTCCAACCTCTGTGTCCAGTGCTCACTCCC-CAAAGTGCCCC------CCAACTCACCCACAGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       16941 353 -    281578 gaaaggatgatacattcacatagtccaaaactcagaaggtacagaagggAAGTATCTCCCAGCCATCTTGTTGCTCTCTCCTGAATTTTTTATGAACGCTTGCAGACATGTTTTATGTATATTATCATAGTATGT------------------acacacaca--cacacccacacacaTGCACGCGTTTCCTCTTTCTACAGAAATGGTAACATACTAAAGGTACTCTTCTGTACCTTCACAGTACAAGTACCCAATACCC-CACCTAGGACTTGCCCAAGACCACAGCCAGGTAAG-----GGCGGGGCAGGCACTTGGCCTCCAAGCTCTGCGTCCAGTGCTCACTCCG-CACAGTGCCCC------CCAACTCACCCACAGCA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8433892 367 + 169600520 gaaaggatgatacattcgcatagttcaaaactcagaaggtacagaagggaagtatctcccagcca-cctatggctctcTCCTGAGTTTTTTATGAAC-CTTGCAGACATGTTTTCTGTATATTATCATAGTATGTacacacacacacacacacacacacacacacacacacacacacac--acaGGTTTCCTCTCTCTACAGAAATGGTAACATACTAAAGGTACTCTTCTGTATCTTCACGAGTAAAGTACCCA--ACCG-CACCTAGGACTTGGCCAAGACCACAGCCAGGTAAG-----GGCAGGGCAGGCACTTGGCCTCCAAGTTCAGTGTCCAGTACTCGCTCCC-CACCGCGCCCC------CCAACTCACCCACAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91232719 364 - 171882078 gaaaggatgatacatttgcatagtccaaaactcagaaggtacagaagggaagtatctcccagccaccctgttgctctctcctgagttttttatgaatgcttacagacatgttttatgtctatt---atagtatgtacacacacacacacacacacacacacacacacacacacacacac------gtttcctctctctacagaagtggtaacatattaaaggtattcttctgttcctATGCAGTACAAATACCCAATACCC-CACCTAAGACTTGGCCAAGACCACAGCCAGGTAAG-----GGCAGGGCAGGCACTTGGCCTCCAAGCTCTGCGTCCAGTGCTCGCTCCC-CACAGTGGGCC------CCAACTCACCCACAGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      414009 358 -   9617498 gaaaggatgatacatttgcatagtccaaaactcagaaggtacagaagggaagtatctcccagccacccTGTTGCTCTCTCCTGAGTTTTTTATGAATGCTTACAGACATGTTTTATGTCTATT---ATAGTATGT------acacacacacacacacacacacacacacacacacacac------GTTTCCTCTCTCTACAGAAGTGGTAACATATTAAAGGTATTCTTCTGTTCCTATGCAGTACAAATACCCAATACCC-CACCTAAGACTTGGCCAAGACCACAGCCAGGTAAG-----GGCAGGGCAGGCACTTGGCCTCCAAGCTCTGCGTCCAGTGCTCGCTCCC-CACAGTGGGCC------CCAACTCACCCACAGCA
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7581084 344 +  58131712 gaaaggatgatacattcgcatcgtccaaaactcagaaggtacagaagggaaatgtctcccagccaccctgttaccctctcctgagttttttatgaacacttgcagacatgttttatgtata-----atagtatgt------------------acacacacacacacacacacacacat------ctttcctctctctacagaaatggtgacatactaaaggtcctcttctgtaccttCACAGTACAAGTACCCAATACCC-CACCTAGGACTTGGCCAAGGCCACAGCCAGGTAAG-----GGCAGGGCAGCAACTTGGCCTCTGAGCTCTGTGTCCAGTATTCGCTCCC-CACAGTGCCCC------CCAACTCACCCACACCA
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3040761 342 +   3749464 gaaaggatgatacattcgcatagttcaaaactcagaaggtacagaagggaagtatctcccagccaccctgtcgctctctcctgagttttctatgaac-cttgcagacatgttttctgtatattatcatagtatgt------------------------acacacacacacacacagag------gtttccgctctctacagaaatggtaacatactaaaggtactctcctgtaccttCACGAGTAAAGTACCCAATATCC-CACCTAGGACTTGGCCAAGACCCCAATCAGGTAAG-----GGCAGGGGAGGCACTTGGCCTCCAAGTTCTGTGTCCAGTGCTCGCTCCC-CACCGCACCCC------CCAACCCACCCACAGCA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72457809 340 - 132174527 GAAAAAATGATACATTCACATAGTCTAAAACTCAGAAGGTACAGTAAGGAAGTACCTCCCAATCACCCGGTTGCTTTCTCCTGAGTTTTTTTTGAGCCCTTgcagacacgttttatgta---tattatagt--------acacacacacacacacacacagacacacacacacacacac------gtttcctctctctacacaaatggtaacatactaaaggcactcttttgtaccttCACAGTACAAGTACCCAATTTCC-CGCTGAGGACTTCGCC----------------AAG-----GACGGGGCAGGCACTTAGCCTCGGAGCTCTGCATCCAGTGCTCACTCCT-GACAGTGCCCC------CTAACTCACCAACAGCA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1012038 360 -   1842816 gaaaggatgatacattcacatagtccaaaactcataaggtacagaagggAAGTATCTCCCAGCCACCTG--TGCTCTCTCCTGAGTGTTTTACAAATCCTTGCAGACATGTTTTATGTATTTTAATACAGTacac----acacacacacacacacacacacacacacacacacacacac------aTTTTctctctttacacaaatcgtaacatactagaggtactcttctgtacTGTTACAGTCCAAGTACCCAGTCCCC-AACT-AGGACTTGGCCAAGGCCACAGCCAGGAAAG-----GGCAAGGCGGGCATTTGGCCTCTGAGCTCTGCGTCCAGTGCTGGCTCCC-CATAGTGCCCT------TCAACTCACCCACAGCA
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9394236 321 +  14477005 gaaaGGATGATACATTTGCATAGTCCAAAACTCAGTAGGTACAGAAGGAAAATATCTCCCAGCCACGCTGTTCCTCTCTCCTGAGTTTTTTATGAATCCTTG----------------------------------------------CACGtgcacacacacacatacacacacacat------gttccctctctctacacaaatggtaacacactaaagatactcttctgtatcttCACAGTACAAGTATCATATCCCC-TACCTAtgacttggccaaggccacaaccaggaaag-----ggaagggcaggcacttggcctccgagctctgtgttcagtgtttgctccc-cacagtgcttc------CCAACTCACCCACAGCA
i aotNan1.NW_018502759v1    I 814 C 0
s otoGar3.GL873533          30956749 309 +  31380117 -----GACAGTATATTCACACAGTTCAAAACTCAGAAAGTACAGA----AAATGTCT-CCAGCCACCCTGTTCCTCTCTC--AATTATTTTGTGAATCCT--------------ATTTATATT------------------------------ATAAATAC-----TACACACAAGCAC------GTTCCCTCTCAACCTATAAACTGTAACATACTAAAGTTATTCTTCTGCACCTTCATAGCCCAAGTACAGTATACCCTCTTCTAGCACTTGGTCAAGGCCACCTGCAGTCAAGAGCAAGGCAGAGCAGGCACTCAGTGTGC-AGCTCTGCATCTGGTACT--CTCCC-CACAGCACTCC------CTATCTCAAACATGGTA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5829817 263 -  61074082 ----GAATGATCTGTTCATACGGCCCACCACTCAGACTGTACAGAGGTGA----------------TCTGTTCCTCTC-CCTGGGT-TTTTATAATTCCTTTCACACACCTTGTAT----------------------------------------------------TACACACATAC---------TTCCCTTCCTATACAAATGGTAACATACGAAAAAGACTGTTCTGTact--------------------------cagccaagac----------ccacagccagtgaaggg---ggcagggctgtctctcagggtctggactctacattcagtgctcagtcca-GAAAGCAGCCCCAACTGCTAAGTCCCCCAAGACA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            408844 292 -    584178 gagtggataatacattcacctggaccaaaattcagaaggtacagaagtaaaaagtctccTAGTGGTGCTGTT--TGTCTCCCGAGTTTCCAATGCATTCTTTAGGACACATTTTTTATATATT-----------------------------------------------CAAGCATAT-----------TCctttctacacaaatggtaataaactacatacactgttctgcaccctCACAGTCCAAACACCATGTCCCT-TCTC----------CCAGGGCCAAAACCAGTCAAT-----GACAAGGATAGAACTCGGGCTCC-TGCTCCAGATCCAGTGCGCACTCCAGGACAGCACTCC------------CAACCA-----
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012109919v1      119848   0 +   7069685 C
e cerAty1.NW_012001627v1     4967482   0 +  14009840 C

a score=53523.000000
s hg38.chr15_KI270851v1_alt   257340 9 +    263054 GCTGACTCA
s panTro5.chr15             72201217 9 -  83230942 GCTGACTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71438012 9 -  99763055 GCTGACTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       17294 9 -    281578 GCTGACTCG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8434259 9 + 169600520 GCTGACTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91233083 9 - 171882078 GCTGACTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      414367 9 -   9617498 GCTGACTCA
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7581428 9 +  58131712 GCTGACTCA
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3041103 9 +   3749464 GCTGACTCA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72458149 9 - 132174527 GCTGACTTG
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9394557 9 +  14477005 GCTGACTCA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30957058 9 +  31380117 GCTGACTCA
i otoGar3.GL873533          C 0 I 479
s canFam3.chr9               5830080 9 -  61074082 GTCAGCTCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            409136 7 -    584178 AATAACT--
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1012398 0 -   1842816 C
e manLeu1.NW_012109919v1      119848 0 +   7069685 C
e cerAty1.NW_012001627v1     4967482 0 +  14009840 C

a score=4246.000000
s hg38.chr15_KI270851v1_alt   257349 1 +    263054 G
s panTro5.chr15             72201226 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71438021 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       17303 1 -    281578 G
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8434268 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91233092 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      414376 1 -   9617498 G
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7581437 1 +  58131712 G
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3041112 1 +   3749464 G
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72458158 1 - 132174527 T
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9394566 1 +  14477005 G
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9               5830089 1 -  61074082 G
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958            409143 0 -    584178 C
e otoGar3.GL873533          30957067 479 +  31380117 I
e cebCap1.NW_016107745v1     1012398 0 -   1842816 C
e manLeu1.NW_012109919v1      119848 0 +   7069685 C
e cerAty1.NW_012001627v1     4967482 0 +  14009840 C

a score=1949485.000000
s hg38.chr15_KI270851v1_alt   257350 421 +    263054 CCCCAGGCTGCCACTAAAAACC---ATACAAAAAAGTAGCAAGAAATGG-CCATGCTGCCTTCTGG--GCA---G---GACACGCCATCCTGCAGAAGGGACCTTT-AGGCTCACTCCTCCATCTGCAAAGGCAGACTCCCA-GGGGATGGGGCAGGTGGTTGGACTCAC-CTGGTTTGCCTTCTTCTTCTGTGTGGCCATGACATCAGAGAGAACACTCTCTAACTCTCCTTTACGCTGCAATGAATGTTGCAGGCGGACAGCCAGATCCTTGGACTTTTCTGTAATGAGAGA-GTT---GAGATG-GGGCCCA--AAGGACTCCCCCTGAAGACCTGTCAAAGTGCCAGGTTGAAGGATGACAGGG--TGCCCAGATTCCCACCTTCAAAGTATCTGAGAGAACGTTTCATGTGGTACAGGTCCGTATTT-AGTTCCTCTTTCT
s panTro5.chr15             72201227 418 -  83230942 CCCCACGCTGCCTCTAACAACC---ATACAAAAAAGCAGCCAGAAATGG-CCATGCTGCCTTCTGG--GCA---G---GACACTCCAACCTGCAGAAGGGACCTTT-AGGCTCACTCCTCCATCTGTGAAGCTGGGCACCCA-GGGGACAGGGCAAGTGGTTGAACTCACACTGAT----CTCCTTCTCCTCTGTGGTGGTGACAGCAGAGAGAGCCCGCTCTAACTCTCCTATACACTGCAATGAATATTGCAGGCAGCCCGCCAGATCCTTGGACTCTTCAGTAATGAGAGA-GTT---GAGATG-GGGCCCA--AAGGACTCCCCCTGAAGACCTGTCAAAGTGCCAGGTTGAAGGATGACAGGG--TGCCCAGATTCCTACCTTCAAAGTATCTGAGAGAACATTTTGTGTCATATAGGTCTGTATTT-AGTTGCTTTTTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71438022 419 -  99763055 CCCCACGCTGCCTCTAACAACC---ATACAAAAAAGCAGCCAGAAATGG-CCATGCTGCCTTCTGG--GCA---G---GACACTCCAACCTGCAGAAGGGACCTTT-AGGCTCACTCCTCCATCTGTGAAGCTGGGCACCCAGGGGGACAGGGCAAGTGGTTGAACTCACACTGAT----CTCCTTCTCCTCTGTGGTGGTGACAGCAGAGAGAGCCCGCTCTAACTCTCCTATACACTGCAATGAATATTGCAGGCAGCCCGCCAGATCCTTGGACTCTTCAATAATGAGAGA-GTT---GAGATG-GGGCCCA--AAGGACTCCCCCTGAAGACCTGTCAAAGTGCCAGGTTGAAGGATGACAGGG--TGCCCAGATTCCTACCTTCAAAGTATCTGAGAGAACATTTTGTGTCATATAGGTCCGTATTT-AGTTGCTTTTTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       17304 420 -    281578 CCCCAGGCTGCCACTAAAAACC---ATACAAAAAAGTAGCAAGAAATGG-CCATGCTGCCTTCTGG--GCA---G---GACATGCCATCCTGCAGAAGGGACCTTT-AGGCTCACTCCTCCATCTGCAAA-CCAGGCTCCCA-GGGGATGGGGCAGGTGGCTGGACTCAC-CTGGTTTGCCGCCTTCTTCTCTGTGGCGATGACAGCAGAGAGAATCCTCTCTAACTCTCCTTCACACTGCATTGAATGTTGCAGGCGGACAGCCAGGTCCTTGGACTCTTCTGTAATGAGAGA-GTT---GAGATG-GGGCCCA--AAGGACTCCCCCTGAAGACCTGTCAAAGTGCCAGGTTGAAGGATGACAGGG--TGCCCAGATTCCCACCTTCAAAGTATCTGAGAGAACGTTCCATGTGGTACAGGTCTGTATTT-AGTTCTTCCTTCT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8434269 416 + 169600520 CCCCAGGCTGCCTCTAACAACC---AGACACAAAAGCAGTGAGGAATGG-CCATGCCGCCTTCTGG--GCA---G---GACACTCCATCCTGCAGAAGGGACCTTT-AGGCTCACTCCTCCATCTGCGAAGCCAGGCTCCCA--GGGACGGGGCAGGTGGTCAGACTCACTCTG----TCCGCCTTCTTCTGTGTGGCGGTGACAGCAGACAGAGCCCGCTGTAACTCCCCTTTACGCTGCAATGAATGTTGCAGGCGGCCAGCCAGATCCTTGGACTCTTCTGTAATGACAGA-TGT---GAGATG-GGTCCCA--AAGGACT-CCCCTAAAGACCTGTCAAAGTGCCAGGCTGAAGGATGACAGGG--CGCCCAGATTCCCACCTTCAAAGTATCTGAGTGAGCGTTTCGTGCGATACAGGTCCGTACTT-AGTTTCCCTTTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91233093 420 - 171882078 CCCCAGGCTG-CTCTAACAACC---ATACACAAAAGCAGAGGGAAAAGG-CCATGCTGTGTTCTGG--GCA---G---GACACTCCATCCTGTAGAATGGAGCTTT-AGGCTCACTCCTCCATCTAGGAAGCCAAGCTGCCA-GGGGACAGGACAAGTGGCTGAACTCACACTGAT-CTCCTTCTTCTCCTGTGTGGCAGTGACAGCAGAGAGAGCCCGCTCTAACTCTGCTATACGCTGCAATGAATGTTGCAGGCGGCCGGCCAGATCCTTGGACTCATCTGTAATGAGAGA-GTT---GAGACG-GGGCCCA--AAGAACTCCCCCTAAAGACATGTCAAAGTGCCAGGTTGAAGGATGACAAGG--TGCCCAGATTCCTACATTCAAAGTATCTGGGAGAACGTTTCATGTGATATAGGTCTGTATTT-AGTTTCCCTTTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      414377 420 -   9617498 CCCCAGGCTG-CTCTAACAACC---ACACACAAAAGCAGAGGGAAAAGG-CCATGCTGTGTTCTGG--GCA---G---GACACTCCATCCTGTAGAATGGAGCTTT-AGGCTCACTCCTCCATCTAGGAAGCCAAGCTGCCA-GGGGACAGGACAAGTGGCTGAACTCACACTGAT-CTCCTTCTTCTCTTGTGTGGCAGTGACAGCAGAGAGAGCCCACTCTAACTCTGCTATACGCTGCAATGAATGTTGCAGGCGGCCGGCCAGATCCTTGGACTCATCTGTAATGAGAGA-GTT---GAGACG-GGGCCCA--AAGAACTCCCCCTAAAGACATGTCAAAGTGCCAGGTTGAAGGATGACAAGG--TGCCCAGATTCCTACATTCAAAGTATCTGAGAGAACGTTTCATGTGATATAGGTCTGTATTT-AGTTTCCCTTTCT
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7581438 419 +  58131712 CCCCAGGCTGCCTCTAACAACC---ATACAC-AAAGCAGCGAGAAATGA-GCATGCTGTCTTCTGG--GCA---G---GACACTGCATCCTGCAGAAGGGAACTTT-AGGCTCACTCCTCCATCTGGGAAGCCAGGCTGCCA-GGGGACGGGGCAACTGGTTGGACTCACCCTGTC-CTCTTCCCGCTGCTGT---GCACACACAGCAGAGAGAGCCCGCTCCAATTCTTGAATACGCTGTAAGGAGGATTGCAGGCGGCCGGCCAGATCCTTGGACTCTTCTGTAACGAGAGAGGTT---GAGATG-GGGCCCA--AAGGACTCCCCCTAAAGACCTGTCAAAGTGCCAGGTTGAAGGATGATAGGG--TGCCCACGTTCCCACCTTCGAAGTGTCTGGCGGCACGTTTAGTATGGTAAAGGGTGGTCTTCAAGTCTGCCTTTTC
i chlSab2.chr26             C 0 I 8
s colAng1.NW_012115677v1     3041113 409 +   3749464 CTCCAGGCTGCCTCTAACAACC---AGTCACAAAAGCAGCGAGAAATGG-TCATGCTGCCTTCTGG--GCA---G---GACACTCCATCCTGTAGAAGGGACCTTT-AGGCTCACTCCTCCATCTGCGAAGCTGGGCTCCCA-GGGGATGGGGCAGGTGGTCAGACTCACTCTG----TCCTCCTCCTTCTGTGTG---------GCAGAGAAAGCCCGCTCTAACTCTCCTTTATGCTGCAATGAATGTTGCAGGCGGCCGGCCAGATCCTTGGACTCCTCTATAATGAGAGA-GTT---GAGATG-GGGCCCA--AAGGACTCCCCCTAAAGACCCGTCAAAGTGCCAGGTTGAAGAATGACAGGG--TGCCCAGATTCCCACCTTCGAAGTATCTGAGAGAGCGTTTCGTGCGATACAGGGCTGTACTT-AGTTTCCCCTTCT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72458159 418 - 132174527 CCCCAGGCTGCCTCTAACAACC---GCATACAAAAGCAGTGAGAAATGG-CCATGCTGCCTTCTAG--GCA-------GACACTCCATCCTGCAGAAGGCACCTTT-AGGTTCACTCCTCCATCTGGGAAGCCAGGCTGCCA-GGGGATGGGGCAGGTGGTTGGACTCACCCTG----TCCGCCTTGTCCTGCTGGGAGGAGACAGCAGAGAGAGTTCGCTCCAACTCCTCTCTCTGCTGCAAGGCCTTCTGCAGGCAGCCGGCCAATTTACTCGACTCTTCTGGAATGAGAGAGATT---GAGATG-GGGCCCT--AAGGACTCCCACTAAAGACCTGTCAAAGTGCCAGGTTGAAGGATAATGGGG--TGCCCAGATTCTCACCTTCAAAGTGCCTGGCGGCACGGCCCATGTGGTATAGGGCAGTTTTC-AACCGCCCATTCT
i calJac3.chr10             C 0 I 9
s aotNan1.NW_018502759v1     9394567 420 +  14477005 CCCCAGGCTGCCTCTAACAACC---ACACACAAAAGGAGTGAGAAATGGCCCATACTGCCTTCTAG--GCA---G---GACACTCCACCCTGCAAAAGGGACCTTA-AGGCTCACTCCTCCATCTGGGAAGCCAGCCTGCCA-GGGGACAGGGCAGGCAGTTGGACTCACCCTG----TCTGCCTTCTTTTGCTGAGTGGAGACAGCAGAAAGAGCCCGCTCCAACTCTCCTACACGCCGCCGGGAATACTGCAGGCGGCTGGCCAGATCTTCGGACTCTCCTGGAATGAGAGAGGTT---GAGATG-GGGCCCA--AAGGACTCCCCCTAAAGGCCTGTCAAAGTGCCAGGCTGAAGGATGATGGGG--TGCCCAGATTCCCACCTTCTTTCTGCCTGGCAGCATGCTGAGTGTGAGCCAGGGCTGTCTGT-AACTCAGCTTTCT
i aotNan1.NW_018502759v1    C 0 I 21
s otoGar3.GL873533          30957546 391 +  31380117 CCCTAGGCTGCTTCTGACAATC---ACAT-CAAAAGCAGGAAGAAATGGTCCATGCTGCACTCTGGCAGTG---G---GACACTCTATCCTGCAGAAGGGATCTTC-AGGCTAACCCCCCCAGTTGGGAA-----------A------------------CTGGGCTCACCTTT----TCTATCTGCTTCTGCTTGGTGGAGACAGCAGACAGAGTCCTCTCCAGCTCTCCTACACGCTGCCGGGAAGACTGTAGGCGACTGGCAAGATCCTCGGACTCTCCTGGAAGGAGAGAAGTC---AAGATG-GAGCCCT--ATGGTCTCTCAC-GAAGGCCTGCCAAGGTGGCAGGTTAAAGGGTGA-AGGG--TCCCCAGACTCCCACCTTCTTTCTGCCTGACTGCCTGCTGAGTATGCACCAGTGCTGAATGA-AGATCTGACTTTT
i otoGar3.GL873533          I 479 I 9
s canFam3.chr9               5830090 424 -  61074082 -CCCTGGTTGCTTCTAACCACCTCAAAACTTTAAAGCAGCAAGAAACAGCCCATGCTGCCTTGTGG--GCA---GGAAGACACTCCACCGTGTGGAAGGGACCTTT----CCCCTTCCCCTGTCGGGGAAGCTGCACCTCCA-GCCAGGTGGGTCAGAAGCTGGGCTCACCCTG----TCCACCTGCTTCTGCTGTGTGGAGACAGCAGACAATGTGCGCTCCAGCTCACTGACACGCTGGCGGGAAGACTGCAGGCGACTAGCAAGATCTTCAGACTCTCCTGGAATGACAGAGTTC---AAAGAG-GAGCCCAGGAAGGAATCCCACCAAAGGCCTGCCAACGTGCCAGGCTATGGGGTGGGAGGA--TGTCTAGACTCCCACCTGCTTTCTGCCTGGCTGCCTGCTGTGTGTGGACCAGGGCTGTCTGT-AATTCGGTCTTCT
i canFam3.chr9              C 0 I 9
s dasNov3.JH564958            409143 373 -    584178 --------------------------------AAAGCAGCTAGGAACAACCCATCCTGCTTTCTAG--GCATCGA---GGCACTCCATCCTGCAGAAAGGGTCCTGGAGGCTCACTGCCCCATCAGGGAGGCT--------A--------------------GGGCTCACCCTG----TCCGCCTGCTTCTGCTGAGTGGAGACAGACGACAGAGTACGCTCCAGTTCTCCTACACGCTGGCGAGAAGACTGCAGGCGACTAGCAAGATCCTCTGTCTCTCCTGGGACGAGAGA-GGTACAGAGACGAGAGTCAA--AAGGACGCCCACTGCAGGGCTGACAGTGTGAGAGGGAGAAAGACAAGAGGGGTGTCCCAGATTCCCACCTGCTTTCTGCCTGACAGCCTGCTGAGTATGAGCCAGGGCAGTCTGT-AACTCGGACTTCT
i dasNov3.JH564958          C 0 I 9
e cebCap1.NW_016107745v1     1012398   0 -   1842816 C
e manLeu1.NW_012109919v1      119848   0 +   7069685 C
e cerAty1.NW_012001627v1     4967482   0 +  14009840 C

a score=20513.000000
s hg38.chr15_KI270851v1_alt   257771 12 +    263054 GTATGTTCAATG
s panTro5.chr15             72201645 12 -  83230942 GTATGTTCAACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71438441 12 -  99763055 GTATGTTCAACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       17724 12 -    281578 GTATGATCGATG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8434685 12 + 169600520 GTACGTTCAATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91233513 12 - 171882078 GTGTGTTCAATC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      414797 12 -   9617498 GTGTGTTCAATC
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7581865 12 +  58131712 GGATGTTGATTG
i chlSab2.chr26             I 8 C 0
s colAng1.NW_012115677v1     3041522 12 +   3749464 GTATATTCAGTC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72458586 12 - 132174527 GGATGTTGATTG
i calJac3.chr10             I 9 C 0
s otoGar3.GL873533          30957946 12 +  31380117 GGATCCCTATGG
i otoGar3.GL873533          I 9 C 0
s canFam3.chr9               5830523 12 -  61074082 GAATCCCTATGG
i canFam3.chr9              I 9 C 0
s dasNov3.JH564958            409525 12 -    584178 GAATCCCAATGG
i dasNov3.JH564958          I 9 C 0
e aotNan1.NW_018502759v1     9394987 21 +  14477005 I
e cebCap1.NW_016107745v1     1012398  0 -   1842816 C
e manLeu1.NW_012109919v1      119848  0 +   7069685 C
e cerAty1.NW_012001627v1     4967482  0 +  14009840 C

a score=192904.000000
s hg38.chr15_KI270851v1_alt   257783 30 +    263054 TCTGGATTTGAACCTTTGGGAGAAAAGCCA
s panTro5.chr15             72201657 30 -  83230942 TCTGGATTTGAACCTTTGGGAGAAAAACCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71438453 30 -  99763055 TCTGGATTTGAACCTTTGGGAGAAAAACCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       17736 30 -    281578 TCTGGATTTGACCCTTTGGGAGAAAAGCCA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8434697 30 + 169600520 TCTGGATTTGAACCTTTGGGAGAAAAGCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91233525 25 - 171882078 TCTGGATTTGAACCTTTGGGAGAA-----A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      414809 25 -   9617498 TCTGGATTTGAACCTTTGGGAGAA-----A
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7581877 30 +  58131712 TCTGGAATTGAACGTTTGGGAGAAAAGCCA
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3041534 30 +   3749464 TCTGGACTTGAACCTTTGGGAGAAAAGCCA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72458598 30 - 132174527 TCTGGATGTGACCCTTTGGTAGAAAAGCCA
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9395008 30 +  14477005 TCTGAATGTGAACCTTTGGGAGAAAAGTCA
i aotNan1.NW_018502759v1    I 21 C 0
s otoGar3.GL873533          30957958 30 +  31380117 TCTGAATGTGAACCTTTGGGAAAAAAGCCA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5830535 30 -  61074082 TCTGAATGTGAACCTTTGGGAAAGAAGGTA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            409537 30 -    584178 TCTGGATGTGAACCTTTGGGAGAAAAGCCA
i dasNov3.JH564958          C 0 I 376
e cebCap1.NW_016107745v1     1012398  0 -   1842816 C
e manLeu1.NW_012109919v1      119848  0 +   7069685 C
e cerAty1.NW_012001627v1     4967482  0 +  14009840 C

a score=226896.000000
s hg38.chr15_KI270851v1_alt   257813 39 +    263054 AGCAAGTGCTGAAAGAGAAGGAAAGAAACCTTCTCCGGA
s panTro5.chr15             72201687 39 -  83230942 AGCAAGTGCTGAAAGAGAAGGAAAGAAACACTCTCCGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71438483 39 -  99763055 AGCAAGTGCTGAAAGAGAAGGAAAGAAACACTCTCCGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       17766 39 -    281578 AGCAAGTGCTGAAAGAGAAGGAAAGAAACCTTCTCCGGA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8434727 39 + 169600520 AGCAAGTGCTGAAAGAGAAGGAAAGAAACATTCCCCGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91233550 39 - 171882078 AGCAAGTGCTGAAAGAGAAGGAAAGAAACATTCTCCGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      414834 39 -   9617498 AGCAAATGCTGAAAGAGAAGGAAAGAAACATTCTCCGGA
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7581907 39 +  58131712 ACCAAGTGCTGAAAGAGAAGGAAAGAACCATTCTCCGGA
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3041564 39 +   3749464 AGCAAGTGCTGAAAGAGAAGGAAAGAAACATTCTCCGGA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72458628 39 - 132174527 AGCAAGTGCTGAAAGAGAAGGAAAGAAGCATTCTCCGAA
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9395038 39 +  14477005 AGCAAGTGCTGAAAAAGAAGGAAAGAAACATTCCCCAGA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30957988 39 +  31380117 AACAAGTGCTGAAAGAGAGGGAAAGAAATATTCTCTAAA
i otoGar3.GL873533          C 0 I 1
s canFam3.chr9               5830565 38 -  61074082 AAGGGGTGCTGAAGAGAGGGGATGGAAGCATTTCCTGG-
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958            409567 376 -    584178 I
e cebCap1.NW_016107745v1     1012398  0 -   1842816 C
e manLeu1.NW_012109919v1      119848  0 +   7069685 C
e cerAty1.NW_012001627v1     4967482  0 +  14009840 C

a score=7800.000000
s hg38.chr15_KI270851v1_alt   257852 1 +    263054 G
s panTro5.chr15             72201726 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71438522 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       17805 1 -    281578 G
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8434766 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91233589 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      414873 1 -   9617498 G
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4967482 1 +  14009840 G
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7581946 1 +  58131712 G
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3041603 1 +   3749464 G
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72458667 1 - 132174527 G
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9395077 1 +  14477005 G
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9               5830603 1 -  61074082 G
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958            409567 376 -    584178 I
e otoGar3.GL873533          30958027 1 +  31380117 I
e cebCap1.NW_016107745v1     1012398 0 -   1842816 C
e manLeu1.NW_012109919v1      119848 0 +   7069685 C

a score=189300.000000
s hg38.chr15_KI270851v1_alt   257853 36 +    263054 GACAGGAG-GAAACTGCACACCCTCCACTCACCTCTA
s panTro5.chr15             72201727 36 -  83230942 GACAGGAG-GAAACTTCACACCCTCCACTCACCTCTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71438523 36 -  99763055 GACAGGAG-GAAACTTCACACCCTCCACTCACCTCTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       17806 35 -    281578 GACAGGAG-GAAAC-GCACACCCTCCACTCACCTCTA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8434767 29 + 169600520 GACAGGAG-AAAACT-CACA-CCTC--CTCACCT---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91233590 36 - 171882078 GACAGGAG-GGAACTGCACAGCCTCCACTCACCTCTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      414874 36 -   9617498 GACAGGAG-GGAACTGCACAGCCTCCACTCACCTCTA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4967483 36 +  14009840 GACACGAG-GGAACTGCACAGCCTCCCCTCACCTCTA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7581947 36 +  58131712 GACAGGAG-AAAACTCCCCACCCTCCACTCACCTCTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      119848 36 +   7069685 GACAGGAG-GGAACTGCACAGCCTCCCCTCACCTCTA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3041604 37 +   3749464 GACAGGAGAAAAACTTCACACCCTCCACTCACCTCTA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72458668 34 - 132174527 GACAGGA---GAACACTTCTCCCTCCACTCACCTCTA
i calJac3.chr10             C 0 I 3
s aotNan1.NW_018502759v1     9395078 36 +  14477005 GACAGGAG-GGAACTCCACACCCTCCACTCACCTGTA
i aotNan1.NW_018502759v1    C 0 I 36
s otoGar3.GL873533          30958028 36 +  31380117 AACAGGAG-CAGGTACCATCCAGCCCACTCACCTGCA
i otoGar3.GL873533          I 1 I 3
s canFam3.chr9               5830604 34 -  61074082 GGCAGGAG-GGAGATCCCAG--CTCCACACACCTGCA
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958            409567 376 -    584178 I
e cebCap1.NW_016107745v1     1012398  0 -   1842816 C

a score=10998.000000
s hg38.chr15_KI270851v1_alt   257889 33 +    263054 ---GCACCC---TTTTGGCTT--TC---TG--TTTC-----------TTGATGT-TTG
s panTro5.chr15             72201763 30 -  83230942 ---GCTCCC---TTTTGGCTT--TT---TC--TTTC-----------TTG---T-TTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71438559 30 -  99763055 ---GCTCCC---TTTTGGCTT--TT---TC--TTTC-----------TTG---T-TTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       17841 32 -    281578 ---GCTCCC---TTTCGGCTT--TCTG-TC--TTTG-----------TTG---T-TTG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8434796 29 + 169600520 ----CACTC---TTTCGGTTT--CG---TT----TCA----------TTG---TGTTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91233626 31 - 171882078 ---GCTCCC---TTTCGGCTT--TG---TT--TCTCA----------TTG---T-TTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      414910 31 -   9617498 ---GCTCCC---TTTCGGCTT--TG---TT--TCTCA----------TTG---T-TTG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4967519 31 +  14009840 ---GCTCCC---TTTTGGCTT--TG---CT--TCTCA----------TTG---T-TTG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7581983 36 +  58131712 ---ACTGCTCCGTCTGTGCTT--TG---TGTATTTCA----------CTG---T-TTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      119884 31 +   7069685 ---GCTGCC---TTTTGGCTT--TG---TT--TCTCA----------TTG---T-TTG
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3041641 33 +   3749464 ---GCTCCC---TTTCAGCTTTCTG---TC--TCTCA----------TTG---T-TTG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72458705 10 - 132174527 ---GCTCCC---TTTG------------------------------------------
i calJac3.chr10             I 3 I 2
s otoGar3.GL873533          30958067 41 +  31380117 ---GTTCCC---GTAGGGCCC--CCTGCTC--TTTCAT---AAACTTTTG---T-TGA
i otoGar3.GL873533          I 3 I 4
s canFam3.chr9               5830638 44 -  61074082 GCTGCTCCC---TTAGAGACC--CC---TG--CTCCTTTGCAAGCTTCTG---T-TCA
i canFam3.chr9              C 0 I 4
e dasNov3.JH564958            409567 376 -    584178 I
e aotNan1.NW_018502759v1     9395114 36 +  14477005 I
e cebCap1.NW_016107745v1     1012398  0 -   1842816 C

a score=1182052.000000
s hg38.chr15_KI270851v1_alt   257922 163 +    263054 CTTTCTTTTCCTGTAGGAAGAGGAAGACAGAGCTCTT-ACCAGGGGGAGGCAGAGATGGCACAGCAAGAGACATGCCCCCAGA--ATGCCACCAATGCCCCAGGACAGGCCCACCCATGGGACCAGGTT---------------------------------ATC-GGGGCCCTGAGGGG----ATGGGGT--GGAATCTGAAGGG
s panTro5.chr15             72201793 160 -  83230942 CTTT----TCCTATAGGAAGGGGAAGACAGAGCTCTT-ACCAGGGAGACGCAGAGACGGCACAGCAAGAGATATGCCCCCAGA--ATGCCACCAACGCCCCAGGACAGGCCCACCCATGGGACCAGGTT---------------------------------ATCAGGGGCCCTGTGGGG----ATGGGGT--GGAATCTGAGGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71438589 160 -  99763055 CTTT----TCCTATAGGAAGGGGAAGACAGAGCTCTT-ACCAGGGAGACGCAGAGATGGCACAGCAAGAGATATGCCCCCAGA--ATGCCACCAATGCCCCAGGACAGGCCCACCCATGGGACCAGGTT---------------------------------ATCAGGGGCCCTGTGGGG----ATGGGGT--GGAATCTGAGGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       17873 164 -    281578 CTTTCTTTTCCTGTAGGAAGAGGAAGACAGAGCTCAT-ACCAGGGGGAGGCAGAGATGGCACAGCAAGAGACATGCCCCCAGA--ATGCCACCAATGCCCCAGGACAGGCCCACCCATGGGACCAGGTT---------------------------------ATCAGGGGCCCTGTGGGG----ATGGGGT--GGAATCTGAGGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8434825 164 + 169600520 CCTTCTTTTCCTATAGGAAGAGGAAGACAGAGCTCTT-ACCAGGGGGAGGCAGAGATGGCACAGCAAGAGACATGCCCCCAGA--ATGCCACCAATGCCCCAGGACAGGCCCACCCATGGGACCAGGTT---------------------------------ATCAGGGACCCTGTGGGG----ATGGGGT--GGAATCTGAGGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91233657 164 - 171882078 CTTTCTTTTCCTATAGGAAGAGGAAGACAGAGCTCTT-ACCAGGGGGATGCAGAGATGGCACAGCAAGAGACAGGCCCCCAGA--ATGCCACCAATGCCCCAGGACAGGCCCACCCATGGGACCAGGTT---------------------------------ATCAGGGACCCTGTAGGG----ATGGGGC--GGAATCTGAGGGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      414941 164 -   9617498 CTTTCTTTTCCTATAGGAAGAGGAAGACAGAGCTCTT-ACCAGGGGGATGCAGAGATGGCACAGCAAGAGACAGGCCCCCAGA--ATGCCACCAATGCCAAAGGACAGGCCCACCCATGGGACCAGGTT---------------------------------ATCAGGGACCCTGTAGGG----ATGGGGT--GGAATCTGAGGGG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4967550 164 +  14009840 CTTTCTTTTCCTATAGGAAGAGGAAGACAAAGCTCTT-ACCCGGGGGAGGCAGAGATGGCACAGCAAGAGACAGGCCCCCAGA--ATGCCACCAATACCCCAGGACAGGCCCACCCATGGGACCAGGTT---------------------------------ATCAGGGACCCTGTAGGG----ATGGGGT--GGAATCTGAGGGT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7582019 164 +  58131712 CTTTCTTTTCCTGTAGGAAGAGGAAGACAGAGCTCTT-ATCCAGGGGAGGCAGAAATGGCACAGCAAGAGACATGCCCCCAGC--ACGCCACCAATGCCCCAGGACAGGCACACCCATGGGACCAGGTT---------------------------------ATCAGGGACCCTGTGGGT----ATGGGGT--GGAATCTGAGGGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      119915 164 +   7069685 CTTTCTTTTCCTATAGGAAGAGGAAGACAAAGCTCTT-ACCCTGGGGAGGCAGAGATGGCACAGCAAGAGACAGGCCCCCAGA--ATGCCACCAATGCCCCAGGACAGGCCCACCCATGGGACCAGGTT---------------------------------ATCAGGGACCCTGTAGGG----ATGGGGT--GGAATCTGAGGGT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3041674 163 +   3749464 CCTTCTTTTCCTATAGGAAGAGGAAGACAGAGCTCTT-ACCAGGGGGAGGCAGAGATGGCACAGCAAGAGACATG-CCCCAGA--ATGTCATCAATGCCCCAGGACAGGCCCACCCATGGCATCAGGTT---------------------------------ATCAGGGACCCTGTGGGG----GTGGGGT--GGAATGTGAGGGG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72458717 161 - 132174527 TTTTCTTTTCCTATAGGAAGAGGAAGACAGAGCTCTT-AGCAGGGGGCGGCAGAGATGGCA---CAAGAGACATGCCCCAGGA--ATGTCACCAATGCCCCAGGACAGATCCACCCATGGGACCAGGTT---------------------------------ATCAGGGACCCTGTGGGG----ATGGGGT--GGAATCTGAGGGG
i calJac3.chr10             I 2 C 0
s aotNan1.NW_018502759v1     9395150 164 +  14477005 CTTTCTTTTCCTACAAGAAGAGGAAGACAGAGCTCTT-ACTAGGGGAAGGCAGAGATGGCACAGCAAGGGACATGCCCCTAGA--ATGCCACCAATGCCCCAGGACAGGCCCACCCATGGGATCAAGTT---------------------------------ATCAGGGACCCTGTGGGG----ATGGGGT--GGAATCTGGGGGG
i aotNan1.NW_018502759v1    I 36 C 0
s otoGar3.GL873533          30958112 143 +  31380117 CTTTTCTCTCCTAGAGGAAAAAGA--------------------------CAGAGATGGAACAGCTGAGGATATGCCCCCAGT--ATACCACCAATGCCCCAAGGCAGACCCACCCAGGAGAGCAGATT---------------------------------ATCAGGGACCGTGCAGGGGAATGGGGGGT--GGGACCCAGGATA
i otoGar3.GL873533          I 4 C 0
s canFam3.chr9               5830686 201 -  61074082 CCTTCTTCTCCTGCAGGAAGGAGGACACAACATCCTTGACTGGAAGGGGGCAGAGATGAAACAGCAAAGGACGTGATCCCAAAATATGCCATCAGTGGAGCAGGATAGGCCCAACAATGTGGCCAGACTgggggggaggggggcgtggtggcaggtagtgggaggagggcaggggtaggg----aaggggtgggggACACAAGGG-
i canFam3.chr9              I 4 C 0
e dasNov3.JH564958            409567 376 -    584178 I
e cebCap1.NW_016107745v1     1012398   0 -   1842816 C

a score=1379786.000000
s hg38.chr15_KI270851v1_alt   258085 181 +    263054 TG-----AGCCTTCT-------------------TCC--------------------------------------------------------------------------------------------AGCAGTCATGTTGC-AAGGAAAC----GAAATCACGTTACTTCTTCCAGCTGATGTTCCACTTGTTTCTTCTGTTGTTTCTGTGGGGAGAGTCAAAT-AAGGTGATGGAGGGTGG-CCCCCTCAACTCTATTCCCCAGACCAGGA---A----GCGGTAGGCAGGGGCCAGGAATGGATTTT
s panTro5.chr15             72201953 244 -  83230942 TG-----AGCCTTCT-------------------TCCCCAGGCTGGGAGTGGGCGAGATGAGAC--------------------------T---GAGGCCTCTATGTCTGAGTG---CCCCCCAAACCCAGCAGTCGTGTCGC-GAGCAAAT-AAAGAAATCATGTTACTTCTTCCAGCTGATGTTCCACTTGTTTCTTCTGTTGTTTCTGTGGGAAGAGTCAAATTAAGGTGATGGAGGGTGA-CCCCCTCAACTCTATTCCCCAGAC-AGGA---A----GCGGTAGGCAGGGGCCAGGAATGGATTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71438749 244 -  99763055 TG-----AGCCTTCT-------------------TCCCCAGGCTGGGAGTGGGCGAGATGAGAC--------------------------T---GAGGCCTCTATGTCTGAGTG---CCCCCCAAACCCAGCAGTCGTGTCGC-GAGCAAAT-AAAGAAATCATGTTACTTCTTCCAGCTGATGTTCCACTTGTTTCTTCTGTTGTTTCTGTGGGAAGAGTCAAATTAAGGTGATGGAGGGTGA-CCCCCTCAACTCTATTCCCCAGAC-AGGA---A----GCGGTAGGCAGGGGCCAGGAATGGATTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       18037 241 -    281578 TG-----AGGCTTCT-------------------TCCCCAGGCTGGGAGTGGGTGAGACGAGAC--------------------------T---GGGGCCTCTATGTCTGAGTG---CCCCCCAAACCCAGCAGTCATGTCGC-GAGGAAAC----GAAATCACGTTACTTCTTCCAGCTGATGTTCCACTTGTTTCTTCTGTTGTTTCTGTGGGGAGAGTCAAAT-AAGGTGATGGAGGGTGG-CCCCCTCAACTCTATTCCCCAGACCAGGA---A----GCGGTAGGCAGGGGCCAGGAATGGATTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8434989 244 + 169600520 TG-----AGCCTTCT-------------------TCCCCAGGCTGGGAGTGGGCGAGACGAGACT---------------GGGGCC----T----------CTACATCTGAGTG---CCCCCCAAACCCAGCAGTCATGTCGC-GAGGAAAA-AAAGAAATCACATTACTTCTTCCAGCTGATGTTCCACTTGTTTCTTCTGTTGTTTCTGTGGGGAGAGTCAAATTAAGGTGATGGAGGGTGG-CCCCCTCAACTCTATTCTCCAGACCAGGA---A----GCGGTAGGT-GGGGCCAGGAATGGATTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91233821 247 - 171882078 TG-----AGCCTTCT-------------------TCCCCAGGCTGGGAGTGGGTGAGATGAGACT-----TGGGCC--------------T----------CTACATCTGAGTGCCCCCCCCCAAACCCAGCAGTCACGTCGC-GAGCAAAC-AAAGAAATCACGTTACTACTTCCAGCTGATGTTGCACTTGTTTCTTCTGTTCTTTCTGTGGGGAGAGTCAAATTAAGATGATGGAGGGTGG-CCCCCTCAACTCTATTCCCCAGACCAGGA---A----GTGGTAGGC-AGGGCCAGGGATGGATTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      415105 246 -   9617498 TG-----AGCCTTCT-------------------TCCCCAGGCTGGGAGTGGGTGAGATGAGACT-----T-----GGGC-----C----T----------CTACATCTGAGTG-CCCCCCCCAAACCCAGCAGTCACATCGC-GAGCAAAC-AAAGAAATCACGTTACTACTTCCAGCTGATGTTGCACTTGTTTCTTCTGTTCTTTCTGTGGGGAGAGTCAAATTAAGATGATAGAGGGTGG-CCCCCTCAACTCTATTCCCCAGACCAGGA---A----GTGGTAGGC-AGGGCCAGGGATGGATTTT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4967714 242 +  14009840 TT-----AGCCTTCT-------------------TCCCCAGGCTGGGAATGGGTGAGATGAGACT-----T--------------GGGCCT----------CTACATCTGAGTG---CCCCCCAAACCCAGCAGTCATGTTGC-GAGCAAAC-AAAGAAATCACGTTACTACTTCCAGCTGATGTTGCACTTGTTTCTTCTGTTCTTTCTGTGGGGAGAGTCAAATTAAGATGATGGAGGGTGG---CCCTTAACTCTATTCCCCAGACCAGGA---A----GCGGTAGGC-AGGGCCAGGGATGGATTTT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7582183 242 +  58131712 TG-----AGCCTTCT-------------------TCCCCAGGCTGGGAATGGGTGAGACAAGACC-----GGCGCC--------------T----------CTACATCTGAGTG---CCCCTCAAACCCAGCAGTCATGTTGT-GAG----C-AAAGAAATCACATTACTTCTTCCAGCTGATGTTCCACTTCTTTCTTCTGTTGTTTCTGTGGGGAGAGTCAAATTCAGGTGACTGAGGGGGGGCCCCCTCAACTCTATTCCCCAGACCAGGA---A----GTTGTAGGCGGGGGCCAGGAATGGATTTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      120079 242 +   7069685 TT-----AGTCTTCT-------------------TCCCCAGGCTGGGAATGGGTGAGATGAGACT-----TGGGCC--------------T----------CTACATCTGAGTG---CCCCCCAAACCCAGCAGTCATGTCGC-GAGCAAAC-AAAGAAATCACGTTACTACTTCCAGCTGATGTTGCACTTGTTTCTTCTGTTCTTTCTGTGGAGAGAGTCAAATTAAGATGATGGAGGGTGG---CCCTTAACTCTATTCCCCAGACCAGGA---A----GCGGTAGGC-AGGGCCAGGGATGGATTTT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3041837 244 +   3749464 TG-----AGCCTTCT-------------------TCCACAGGCTGGGAGTGGGCGAGACGTGACT-----G-------------------AGGC-----CTCTACATCTGAGTG----CCCCCAAACCCAGCGGTCATGTCGC-GAGGAAAC-AAAGAAATCACATTACTTCTTCCAGCTGATGTTCCACTTGTTTCTTCTCTTGTTTCTGTGGGGAGAGTCAAATGAAGGTGAGGGAGGGCTG-CCCCCTCAACTCTATTCCCCAGGCCAGGA---A----GCAGTAGGCAGGGGCCAGGAATGGATTTT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72458878 233 - 132174527 CA-----AGCCTTCT-------------------TCCCCAGGCTGGGAGTGGGTGAGATGAGACTGGCATC-------------------T----------CTACATCTGAGTG---CCCCCCAAACCCCACAGTCATGTCAC-GGGCAAAC-----AAATCACGTTACTTCTCTCAGCTGTTGTTCCAGGCCTTCCTTCTGCTGTTTCTGT--GGAGAGTCAAG-----GTGACTGAGGGTGG--CCCCTCAACTCTATTCTCCACACCAGGA---A----GTGATAGACAGGGGCCAGGAATGGGTTTT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9395314 250 +  14477005 CATGGTGAGCCTTCT-------------------TCCCCAGGCTGGGAGTGGGTGAGATGAGACTGAGGCC-------------------T----------CTTCATTTGAATG---CCCCCCAAACCCAGCAGACATGTTGT-GAGCAAAC-AAAGAAATCACGTTACTTCTTCCAACTGATCCGTAATTTCTTGGTTCTGTTGTTTCTGTGGGGAGAGTCAAAGGAATGTGACTGAAGGTGG-CCCCCTCAACTCTACTCCCCAGACCAGGA---A----GGGGTAGGCAGGGGCCAGGAATGGATTTT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30958255 202 +  31380117 TG-----AGTC---------------------------CAGGCTGGGAA-------------AC--------------------------C--------------------------TCCCCCAAACCCATCAACTACATCAT-AAGCAAAC-AAAGAAATCACATTACTTTTTCTAGCTGATCCATAAGTTCTTGGTTCTTCTCTTGCTGT--AGAGAGTCAAAGGCACATGACTCAGAGTGT-CCCCCTCAACTTTATTCCCCACATAAAGA---A----GGGGTAAGCCAGGACCAGGAATGGATTTT
i otoGar3.GL873533          C 0 I 127
s canFam3.chr9               5830887 250 -  61074082 -------GGCCTTTTATTCCTCCAGGCTGGGAGCAGACCAAGATGAGAATGGGC----CTCTACA-------------------------T----------------CTGAATC---CTCCCCAAACGCCTCTGCCACATAAT-CAGCAGACAAAAGATATCATGTTACTTTTTCCAGTTGATCCAGAGTTTCCTGGTTCTGTTGTTTCTGTGGGGAGAGCCAAAGAGAGGTAACTCGGTCTAT-TCCCTTTCACTGCCCTCTGCACACCAAGACTGA----GGGATGGGCAGGGGCCAGGAATGGGTTTC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            409943 196 -    584178 ------------------------------------------------------------------------------------------------------------TGAATC-CTCCCCCAAAACCTATCAGCCATGTAGAGGAACAAAC-AAGGAAACCACATTACTTTCTCCAGTTGATCCAAAACATCTTGTTTCTCCTGTTTCTGTAGAGAGAGCCAAAGCAAGGTATCTGAGGTTGT-CTTCCTTTACAACATTC-CCAGACCAAGA---AAGAGGAGGCAGGTAGGGGCCAGGAAGGGATTTT
i dasNov3.JH564958          I 376 C 0
e cebCap1.NW_016107745v1     1012398   0 -   1842816 C

a score=143961.000000
s hg38.chr15_KI270851v1_alt   258266 19 +    263054 AAAGGCAAAGTTCTCAGAC
s panTro5.chr15             72202197 19 -  83230942 AAAGGCAAAGTTCTCAGAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71438993 19 -  99763055 AAAGGCAAAGTTCTCAGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       18278 19 -    281578 AAAGGCAAAGTTCTCAGAC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8435233 19 + 169600520 AAAGGCAAAGTTCTCAGAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91234068 19 - 171882078 AAAGACAAAGTTCTCAGAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      415351 18 -   9617498 AAAG-CAAAGTTCTCAGAC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4967956 19 +  14009840 AAAGGCAAAGTTCTCAGAC
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7582425 19 +  58131712 AAAGGCAAAGTTCTCAGAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      120321 19 +   7069685 AAAGGCAAAGTTCTCAGAC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3042081 19 +   3749464 AAAGGCAAAGTTCTCAGAC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72459111 19 - 132174527 GAAGGCACATTTCTCAGAC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9395564 19 +  14477005 AAAGGCAAAGTTCTCAGAC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30958584 19 +  31380117 aatagctgggatcacaggc
i otoGar3.GL873533          I 127 I 178
s canFam3.chr9               5831137 11 -  61074082 AAAGGGGAAAC--------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            410139 19 -    584178 AAAGGAAAAGTTCTCAGAT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1012398  0 -   1842816 C

a score=2142674.000000
s hg38.chr15_KI270851v1_alt   258285 312 +    263054 ATAATGGGAACACGAACTGGT-AAACTCTCCTCAAGCTCCCAAGGACAGAGGATTTGGGTCTTTGTGGGCTTTTGCCCACAGCCACAGAACTCAAAGTCT-GAATCTGGAATCTCTTGAGAGGACAGCAACATAAACCTCTA---------------------------------------------------GAGATGGAGTTTCAGAA-----AGG----CCCC-TCCTTCTGGCAG----CTTGTGATTTAGAAAAGTGGGttcattcaataaacacctactgagcacg---------------tatgggccaggtacggttcttcacag--ca--gatataggatagaaaaggacagacaggagcccttagccctgaggtttccattctcgggg
s panTro5.chr15             72202216 312 -  83230942 CCAATGGGAACATGAACTGGT-AAACTCTCTTCAAGCTCCCAAGGACAGAGGATTTGGGTCTTTGTTGGCTTTTGCCCACAGCCACAGAACTCAAAGTCT-GAATCAGGACTCTCTTGAGAGGACAGTAACATAAACCCCTA---------------------------------------------------GAGATGGAGTTTCAGAA-----AGG----CCCC-TCCTTCTGGCAG----CTTGTGATTTAGAAAAGTGGGttcattcaataaatgtgtactgagcatg---------------tatgggccaggtatgattcttcacag--ca--gatataggatggaaaaggacagacaggagcccttggccctgaggtttccattctagggg
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71439012 312 -  99763055 CCAATGGGAACATGAACTGGT-AAACTCTCTTCAAGCTCCCAAGGACAGAGGATTTGGGTCTTTGTTGGCTTTTGCCCACAGCCACAGAACTCAAAGTCT-GAATCAGGACTCTCTTGAGAGGACAGTAACATAAACCCCTA---------------------------------------------------GAGATGGAGTTTCAGAA-----AGG----CCCC-TCCTTCTGGCAG----CTTGTGATTTAGAAAAGTGGGttcattcaataaatgtgtactgagcatg---------------tatgggccaggtatgattcttcacag--ca--gatataggatggaaaaggacagacaggagcccttggccctgaggtttccattctagggg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       18297 311 -    281578 ATAATGGGAACACAAACTGGT-AAACTCTC-TCAAGCTCCCAAGGACAGAGGATTTGGGTCTTTGTTGGCTTTTGCCCACAGCCACAGAACTCAAAGTCT-GAATCTGGAATCTCTTGAGAGGACAGCAACATAAACCTCTA---------------------------------------------------GAGATGGAGTTTCAGAA-----AGG----CCCC-TCCTTCTGGCAG----CTTGTGATTTAGAAAAGTGGGttcattcaataaacacttactgagcacg---------------tatggaccaggtacggttcttcacag--ca--gatataggatggaaaaggacagacaggagcccttagccctgaggtttccattctcgggg
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8435252 312 + 169600520 CCAATGGGAACACGAACTGGT-CAACTCTCCTCAAGCTCCCAAGGACAGAGGATTTGGGTCTTTGTTGGTTTTCACCCATAGCCACAGAACTCAAAGTCT-GAATGTGGAATCTCTTGAGAGGACAGGAACACAATGCTCTA---------------------------------------------------GAGATGGAGTTGGAGAA-----AGG----CCCC-CCCTCCTGCCTG----CTTGTGATTTAGAAAAGTGTGttcattccataaacatttactgagcacg---------------tacgggccaggtacggctcttcacag--ca--gatataggatggaaaaggacagacagcagcccttggccctgaggtttccattctaggtg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91234087 310 - 171882078 CCAAAGGGAACACTACCTGGT-AAACTCTCCTCAAGCTCCCAAGGACAGAGGATTTGGGTCTTTGTTGGTTTTCAACCACAGCCACAGAACTCAAAGTCT-GAATCTGTAATCTCTTGAGAAGAGAGTAACATAAACCTCTA---------------------------------------------------GAGAGAGAGTTTGGGAA-----AGG-----CCC-CCCTTCTGCCAG----CTTGTGATTTAGAAAAGTGcgttcattcaataaacattt-ctgagcaca---------------tatgggccaggtactgttcttcacag--ca--gatataggatggaaaaggacagacaggagcccttggcactgagatttccactgtagggg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      415369 310 -   9617498 CCAAAGGGAACACTACCTGGT-AAACTCTCCTCAAGCTCCCAAGGACAGATGATTTGGGTCTTTGTTGGTTTTCAACCACAGCCACAGAACTCAAAGTCT-GAATCTGTAATCTCTTGAGAAGAGAGTAACATAAACCTCTA---------------------------------------------------GAGAGAGAGTTTGGGAA-----AGG-----CCC-CCCTTCTGCCAG----CTTGTGATTTAGAAAAGTGcgttcattcaataaacattt-ctgagcaca---------------tatgggccaggtacggttcttcacag--ca--gatataggatggaaaaggacagacaggagcccttggcactgagatttccactgtagggg
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4967975 310 +  14009840 CCAATAGGAACATGACCTGGT-AAACTCTCCTCAAGCTCTCAAGGACAGAGGATTTTGGTCTTTGTTGGTTTTTGCCAACAACCACAGAACTCAAAGTCT-GAATCTGGAATCTCTTGAGAAAAGAGTAACATAAACCTCTA---------------------------------------------------GAGATAGAGTTTGAGAA-----AGG-----CCC-CCCTTCTGCCAG----GTTGTGATTTAGAAAAGTGcattcattcaataaacattt-ctgagcaca---------------catgggccaggtacagttcttcacag--ca--gatacaggatggaaaagaacagataggagcccttagcactgagatttccactatagggg
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7582444 314 +  58131712 CCAGTGGCAACATGAACTGGT-CAACCCTCCTCCAGCTCCCAAAGACAGAGGATTTGGGTCTTTGTTGGTTTTTGCCCACAGCCACAGAACTCAAAGTCT-GAATCTGGATTCTCTCCAAAGGATAGTAACATAAACCTCTA---------------------------------------------------GAGACGGAGTCTGAGAA-----AGG-----CCCTCCCTTCTGCCAG----CTTGTGATTTAGAAAGATGTGttcattcaaccaacgtttactgagcaca---------------tacgggccaggtacgggtcttcacagcaca--gatacaggccagaaaaggacagacgggagccgttggccctgagatttccattctagggg
i chlSab2.chr26             C 0 I 333
s manLeu1.NW_012109919v1      120340 310 +   7069685 CCAATAGGAACATGACCTGGT-AAACTCTCCTCAAGCTCTCAAGGACAGAGGATTTTGGTCTTTGTTGGTTTTTGCCAACAACCACAGAACTCAAAGTCT-GAATCCGGAATCTCTTGAGAAGAGAGTAACATAAACCTCTA---------------------------------------------------GAGATAGAGTTTGAGAA-----AGG-----CCC-CCCTTCTGCCAG----GTTGTGATTTAGAAAAGTGcgttcattcaataaacattt-ctgagcaca---------------aatgggccaggtacagttcttcacag--ca--gatacaggatggaaaaggacagacaggagcccttgGCACTGAGATTTCCACTACAGGGG
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3042100 308 +   3749464 ATAATGGGAACACGAACTGGT-AAACTCTCCTCAAGCTCCCAAGGACAGAGGATTTGGGTCTTTGTTGGTTTTCACTCACAGCCACAGAACTCAAAGTCT-GAATGTGCAATCTCTTGAGAGGACAGTAACATAAACCTCTA---------------------------------------------------GAGATGGAGTTTGAGAA-----AGG----CCCC-CCCTTCTGCCCG----CTTGTGATTTAGAAAAGTGcgttcattcagtaaacatttactgagcacg---------------aatgggccaggtacggttcttcacag--ca--gatacaggacagaaaatgaca----ggagcccttggccctgaggtttccattctagggg
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72459130 301 - 132174527 CCAATGGGAACACAAACTGGT-CAACTCTCCTGAAGCTCCCAAGGACAGA------GAGTCTTTGTTGGCTTTTGCCCACAGCCACAGAACTCAAAGTCT-GAATCTGGATTCTCTCGAAAGGACAGTAACATAAACCTCTA---------------------------------------------------GAGATGAAGTTTGAGAA-----AGG-----GCC-CCCTTCTGTCAG----CTTGTGATTTAGAAAACT--attcattcaataaatgtttactgagcaaa---------------tatgggccaggtacagttcttcacag--cagagatgtaggacagaaaaagac----aggagcctttggccctgaggtttccattctaaggg
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9395583 311 +  14477005 CCAATGGGAACACGAGCTGGT-AAACTCTCCTCAGGCTCCCAAGGAAAAGAGATTTGGGTCTTTGTTGGTTTTTGCCCACAGCCACAGAACT--GGGTCT-GGATCT-GATTCTCTTGAAAGGACAGTAACATAAACCTCGA---------------------------------------------------GAGATGAAGTGTGAGAA-----AAG-----CCCACCCTTCTGCCAG----CTTGTGATTTAGAAAGGTGcattcattcaacaaacatttgctgagaata---------------tacgggccaggtacagttcttaatag--cagggatataagacagaaaaagacagataggagcccttggccctgaggtttacattctagtgg
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30958781 353 +  31380117 CCTCTGGGGACTTGAAGTGACAAAACTTTCCTCAAACTCCCAAGGTCAGAGAATTTGTGTCTTTGGTGGTCTTTGCTTATGGCTATAAAGCTGTAAGCCT-GGATCT--------------GGATAGTAATATAAACCTCTAGATGGTATCCCATCCTGTCCTCTAGGGAACATTTCTTTCCCTCTCATTCTTGAAATAGAGTTTGAGGA-----AAGAAAGACTA-CCCTTCTGCCAG----CTTGTGATTTAGGAGGGTAcattcattcaacacatatttactgagcaca------------gactacaggcctgctactactcttaatca--cagggacacagaaatgaaaaggacagataa-atccctttaccctgttgtttc-----tagtgg
i otoGar3.GL873533          I 178 C 0
s canFam3.chr9               5831148 288 -  61074082 TTCATGTGGACACGAACTGAT-AGAGTCTCCTCAAGCTCCCAAGAAAAGA--CTTTGGGTCTTGGGTAG-TTTTGCTCACAGCTACACAGATGAGAGTC-------------CTTGTGAAAGGACAGGG--ATAAACCTCCA---------------------------------------------------GAAACAGGAGTTGAGAAGCAAGAGA-----CTA-CCCTTCTGGTAG----CTCGTGATTTGGAAGGGTGCTttcattcaacaagtatttactgagcaccctgggcctaagtacccacaggccaggttctgttcttaatag--cagggatacaggaatgagaaggac------------CTgattctctg----------------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            410158 322 -    584178 CCCATGGAGATTTGAATTGAC-AAACTCTTCTCAAGTTCCCAAGAAAAGAGAACTTGGGTCTTCCTTGGTTTGTACTCCCAGCGATGGAACTGAAAGTCTAGAACCTGGAATCCTTCTAAAGGACAATAATATAAACCTCTA---------------------------------------------------GAAACGGAGTCTGAAAA-----GGGAAAGACAA-CCCACCTGCCAGCTCACTCACGATTTGAAAGGGCGcattcattcagcaaagatttactgagcata------------tactatgggctgggtactattcttactag--cagggacagaggaatgcaaaggatagacaagatccccacattcc----ctaacattctaACAG
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1012398   0 -   1842816 C

a score=94635.000000
s hg38.chr15_KI270851v1_alt   258597 20 +    263054 gCCTTTAAATCTCAGACTC-G
s panTro5.chr15             72202528 21 -  83230942 gCCTTTAaatttcagactctc
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71439324 21 -  99763055 gCCTTTAaatttcagactctc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       18608 20 -    281578 gCCTTTAAATCTCAGACTC-G
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8435564 20 + 169600520 gCCTTTAaatctcggactct-
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              91234397 20 - 171882078 gCCTTTAAATCTCTGACTCT-
i macFas5.chr7              C 0 I 1
s macNem1.NW_012017799v1      415679 20 -   9617498 gCCTTTAAATCTCTGACTCT-
i macNem1.NW_012017799v1    C 0 I 1
s cerAty1.NW_012001627v1     4968285 20 +  14009840 gCCTTTAAATCTCTGACTCT-
i cerAty1.NW_012001627v1    C 0 I 1
s manLeu1.NW_012109919v1      120650 20 +   7069685 GCCTTTAAATCTCTGACTCT-
i manLeu1.NW_012109919v1    C 0 I 1
s colAng1.NW_012115677v1     3042408 20 +   3749464 CCCTTTAAATCTCGGACTCT-
i colAng1.NW_012115677v1    C 0 I 2
s calJac3.chr10             72459431 20 - 132174527 gCCTTTAAATATCagactct-
i calJac3.chr10             C 0 I 1
s aotNan1.NW_018502759v1     9395894 20 +  14477005 CCCTTTAaatcttggactct-
i aotNan1.NW_018502759v1    C 0 I 1
s otoGar3.GL873533          30959134 20 +  31380117 gCCTAGAaatctttgatttt-
i otoGar3.GL873533          C 0 I 1
s dasNov3.JH564958            410480 20 -    584178 ACCTTTCAGTCTTTGCTTTT-
i dasNov3.JH564958          C 0 I 1
e canFam3.chr9               5831436  0 -  61074082 C
e cebCap1.NW_016107745v1     1012398  0 -   1842816 C
e chlSab2.chr26              7582758 333 +  58131712 I

a score=832080.000000
s hg38.chr15_KI270851v1_alt   258617 117 +    263054 AGAGCTAACAGAGA---CCTTTGATACT------CACTACCTCCTCTggaaacacgagcccaaaaaggagaggtggcttgtccagaat-----caaa----gagcaaattagggactgagtcatggcagaaatac
s panTro5.chr15             72202549 117 -  83230942 agagctaacagaga---cctttgatact------cactacctcctctggaaacacaagaccaaaaaggagaggtggcttgtccagaat-----caaa----gagcaaattagggactgagtcacagcagaaatac
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71439345 117 -  99763055 agagctaacagaga---cctttgatact------cactacctcctctggaaacacaagaccaaaaaggagaggtggcttgtccagaat-----caaa----gagcaaattagggactgagtcacagcagaaatac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       18628 117 -    281578 AGAGCTAACAGAGA---CCTTTGATACT------CACTACCTCCTCTggaaacacgagcccaaaaaggagaggtggcttgtccagaat-----caaa----gagcaaattagggactgagtcatggcagaaatac
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8435585 117 + 169600520 agagctaacagaaa---ccttagatact------cactacctcctctggaaacccgagtccagaaaggagaggcggcttgtccagaat-----caaa----gagcaaattagggactgagtcacggcagaaatac
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              91234418 120 - 171882078 AGAACTAACAGAAAGATACTCTGATACT------CCATATCTCCTCTggaaacatgagctcaaaaaggagaggtggcttgtccagaat-----caaa----gagcaaattagggactgagtcacggcagaaatac
i macFas5.chr7              I 1 C 0
s macNem1.NW_012017799v1      415700 120 -   9617498 AGAACTAACAGAAAGATACTCTGATACT------CCATATCTCCTCTggaaacatgagctcaaaaaggagaggtggcttgtccagaat-----caaa----gagcaaattagggactgagtcacggcagaaatac
i macNem1.NW_012017799v1    I 1 C 0
s cerAty1.NW_012001627v1     4968306 120 +  14009840 AGAACTAACAGAAAGATACTCTGATACT------CCGTATCTCCTCTggaaacatgagctcaaaaaggagaggtggcttgtccagaat-----caaa----gagcaaattagggactgagTCACTGCAGAAATAC
i cerAty1.NW_012001627v1    I 1 C 0
s chlSab2.chr26              7583091 115 +  58131712 agagctaacagaga---cctttgatact------c--tacctcctccggaaacacaagcccaaggaggagagctggctagtccagact-----caaa----gagcaaattagggactgagtcagggcagaaatac
i chlSab2.chr26             I 333 C 0
s manLeu1.NW_012109919v1      120671 120 +   7069685 AGAACTAACAGAAAGATACTCTGATACT------CCGTATCTCCTCTggaaacatgagctcaaaaaggagaggtggcttgtccagaat-----caaa----gagcaaattagggactgagtcacggcagaaatac
i manLeu1.NW_012109919v1    I 1 C 0
s colAng1.NW_012115677v1     3042430 117 +   3749464 AGAGCTAACAGACA---CCTTTGATAGT------CACTACCTCCTCTGGAAACGCGAGCCCAAAAAGCAGAGGCAGCTTGTCCAGAAT-----CAAA----GAGCAAATTAGGGACTGAGTCACGGCAGAAATAC
i colAng1.NW_012115677v1    I 2 I 523
s calJac3.chr10             72459452 117 - 132174527 agagctaacagaga---cctctgagact------cttgacctcctgtggaaacacgagcccgaggaggagaggtggcttgttcagagt-----caaa----tagcaaattagggactgagtcacagcaggaatac
i calJac3.chr10             I 1 C 0
s aotNan1.NW_018502759v1     9395915 121 +  14477005 agagcta--agaga---cctttgatactctctaactctacctcctcaggaaatgcaagcccaaggaggagaagtggtttgtccaaaat-----caaa----gagcaaattaaggactgagtcaagatggaaatat
i aotNan1.NW_018502759v1    I 1 C 0
s otoGar3.GL873533          30959155  96 +  31380117 agagctaaaagaga---cctttgctaat------t-ccaccttcttaggaaactcaagccc-aggaggagagatgacttatctaaaat-----caAA----------------GACAGAG-------AAAAACAT
i otoGar3.GL873533          I 1 C 0
s canFam3.chr9               5831436 124 -  61074082 --agctaaagggga---ccttggacacc-tctaattctacctcctcaggagactgaagcccagagaggaaaggtgactcatccaagtt-----caaagatggagcaaattaggggttgggtcagggcaggagcac
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            410501 117 -    584178 Agagctcaaagata---cc----gtaat------t-ctactccttcaggcaactgaaggccagtgaagagaagtgacttgtccaaagtgaaaccaag----caacaaattaggcactaagtcagggctgagacac
i dasNov3.JH564958          I 1 C 0
e cebCap1.NW_016107745v1     1012398   0 -   1842816 C

a score=1574406.000000
s hg38.chr15_KI270851v1_alt   258734 225 +    263054 ggggcccttgacaaccagtcAGGCTAGCACTTCC-CCAAGAGG-CAACAACCCCAGGGCG----TGTGTAGCAA-----GGACTCGAGCAGGGGT--GTCTGGAGAGGAGAGAGTCGGCAAAGAGGGCAGCAAAAG-AAGAGCCATGCTGCA-------TG-------CTCTG------GGGTC-CCTCCAGGTGAGGCCTGGGCAC---CCAAGCTCCCTATTTGTCCCGGGCACCAGGGACCCCCAGCCCCTTTCTTCAGG
s panTro5.chr15             72202666 224 -  83230942 ggggcccctgacaaccagtcAGGCAAGCACTTCC-CCAAGAGG-CAACAACCCCAGGGCG----TGTGTAGCAA-----GGACTCGAGCAGGGGT--GTCTGGAGAGGAGAGAGTCGGCAAAGAGGGCAGCAAAAG-AAGAGCTATGCTGCA-------TG-------CTCTG------GGGTC-CCTCCACGTGAGGCCTGGGCAC---CCCAGCTCCCTATTTGTCCTTGCCACCAGGGGCCCCCAGCAC-TTTCTTCAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71439462 224 -  99763055 ggggcccctgacaaccagtcAGGCAAGCACTTCC-CCAAGAGG-CAACAAACCCAGGGCG----TGTGTAGCAA-----GGACTCGAGCAGGGGT--GTCTGGAGAGGAGAGAGTCGGCAAAGAGGGCAGCAAAAG-AAGAGCTATGCTGCA-------TG-------CTCTG------GGGTC-CCTCCACGTGAGGCCTGGGCAC---CCCAGCTCCCTATTTGTCCTTGCCACCAGGGGCCCCCAGCAC-TTTCTTCAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       18745 222 -    281578 ggggcccttgacaaccagtcAGGCTAGCACTTCC-CCAGGAGG-CAACAACCCCAGGGCG----TGTGTAGCAA-----GGACTCGAGCAGGGGT--GTCTGGAGAGGAGAGAGTCGGCAAAGAGGGCAGCAAAAG-AAGAGCCATGCTGCA-------TG-------CTCT-------GGGTC-CCTCCAGGTGAGGCCTGGGCAC---CCAAGCTCCCTATTTGTCCCGG-CACCAGGGACCCCCAGCCC-TTTCTTCAGG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8435702 225 + 169600520 agggcccctgacaaccagtcAGGCTTACACTCCC-CCAAGAGG-CAACAACCCCAGGGCG----TGTGTAGCAA-----GGACTTGAGCAGGGGT--GTGTGGAGAGGAGAGAGTTGGCAAAGAGGGCAGCAAAAG-AAGAGCCATGCTGCG-------TG-------CTCTG------GGGTC-CCTCCAGGTGAGGTCTGGGTGC---CCCAGCTCCCTATTTGCCCTTGGCACCAGGGGCCCCCAGTCCCTTTCTTCAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91234538 220 - 171882078 ggggcccctgacaaccagtcAGGCTAGCACTTCC-CCGAGGGG-CAACAACCCCAGGGCA----TGTGTAGCAA-----G-----GAGCACGGGT--GACTGGAGAGGAGAGAGTCAGCAAAGAGGGCAGCAAAAG-AAGAGCCATGCTGCA-------TG-------CTCTG------GGTTC-CCTCCAGTTGAGGCCTGGGTTC---CCCAACTCCCTATTTGCCCTTGACACCAGGGGACCCCAGTCCCATTCTTCAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      415820 220 -   9617498 ggggcccctgacaaccagtcAGGCTAGCACTTCC-CCGAGGGG-CAACAACCCCAGGGCA----TGTGTAGCAA-----G-----GAGCATGGGT--GACTGGAGAGGAGAGAGTCAGCAAAGAGGGCAGCAAAAG-AAGAGCCATGCTGTA-------TG-------CTCTG------GGTTC-CCTCCAGTTGAGGCCTGGGTTC---CCCAACTCCCTATTTGCCCTTGACAACAGGGGACCCCAGTCCCATTCTTCAGG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4968426 214 +  14009840 GGGGCCCC-GACAACCAATCAGGCTAGCACTTCC-CCAAGGGG-CAACAACCCCAAGGCA----TGTGTAGCAA-----G-----GAGCAGGGGT--GACT-----GGAGAGAGTCGGCAAAGAGGACAGCAAAAG-AAGAGCCATGCTGCA-------TG-------CTCTG------GGTTC-CCTCCAGTTGAAGCCTGGGTGC---CCCAACTCCCTATTTGCCCTTGACACCAGGGGACCCCAGTCCCATTCTTCAGA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7583206 220 +  58131712 gaagcccctaacAACC-------CT--CACTTCC-CTGAGAAG-CGAGAACCCCAGGGTG----TGTGTGGCAAGGACTG-----GAGCAGGGGT--GTCTGAA--GAAGAGAGTCAGCAAAGAGGAGAGTGACAG-AAGAGCCATGCTGCATGCTCCTTG-------CTCTG------GGGTC-CCTCCAGGTGAACCCCGGGCAC---TCCAGCTCCCCATTAACTCTTGGCACCAGGGG-CCCCAGCCCCTTTCTTCAGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      120791 214 +   7069685 ggggcccc-gacaaccaatcAGGCTAGCACTTCC-CCAAGGAG-CAACAACCCCAAGGCA----TGTGTAGCAA-----G-----GAGCAGGGGT--GACT-----GGAGAGAGTCAGCAAAGAGGACAGCAAAAG-AAGAGCCATGCTGCA-------TG-------CTCTG------GGTTC-CCTCCAGTTGAGGCCTGGGTAC---CCCAACTCCCTATTTGCCCTTGACACCAGGGGACCCCAGTCCCATTCTTCAGG
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3043070 225 +   3749464 GGGGCCCCTGACAACCAGTCAGGCTCGCACTCCC-CCGAGAGG-CAACCACCCCAGGACG----TGTGTAGCAA-----GGACTAGAGCAGGGGT--GTGTGGAGAGGAGAGAGTCGGCAAAGAGGGCAGCAAAAA-AATAGCCATGCTGCA-------TG-------CTCTG------GGGTC-CCTCCAGGTGAGGTCTGGGTGC---CGCAGCTCCCTATTTGCCCTTGGCACCGGGGGCCCCCAGTCCCTTTCTTCAGG
i colAng1.NW_012115677v1    I 523 C 0
s calJac3.chr10             72459569 232 - 132174527 agggcccctgaccaccagtcAGGTTAGCACTTCC-CTGAGAGG-TGACAGCCCCAGGGCA----TGTGTGGCAA-----GGACCTGAGCAGGGGTGAGTCTGGAGAAGAGAGAGTCGGCAAAAAGGGCAGCAACAG-AAGAGCCATGCTGCA-------TG-TCCCTGTTCT-------GGGTC-CCTCCAGGTGAGGCCTGGGTGC---CCCAGCTCCCCATTTGCCCTTGGCACCAGGGTCCCACAGCCCCTTTTCTCGGG
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9396036 232 +  14477005 ggggctcctgacaaccagtcAGGCTAGCACCTCC-TCGAGAGG-CAACAACCCCAGGGCG----TGTGTGGCAA-----GGACTCGAGCAGGGGT--GTCTAGAGAAGAGAGAGCAGGCAAAGAGGGCAGCAACAG-AAGAGCCATGCTGCA-------TGCTCCGTGCTCTG------GGGTC-CCTCCAGCTGAGGCCTGGGCCC---CCCAGCTCCCCATTCGCCCTTGGCACCAGGGGCCCCCTGCCCCTTTCTTCAGG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30959251 216 +  31380117 AGGGCCTCTTACAA---GTTAAGCTAGTTTTTCC-CCAAGAGGTTAACAACCCCGGGGCT----AGTGTTGTAA-----GGACCCAAGCAGGGGC--ATCTGGAGAAGAGAGAGTAGGCAAAG-----------------AGCCATGCGGCA-------TG-------CTCTGTACTCAGGGTCGCCTCCAGCTGAAGCCTAGCCACCCACCCAGCACCC-ATTCTCCCTTGACACCAGGGGACCCCAGCTTCTTTCTTCACA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5831560 210 -  61074082 -------------accagccaagccagtgcttcc-tcCAGAGG-CTACAGCCCTGGGGCA----AGTATGGAAA-----GGACTCAAGCAGGGGT--GTCCGGAGAACAGA-AGGAGGCAAAGAAGGCAGCCACAG--AGAGCCATGCCGCA-------TG-------CTCTG------GGGTC-CCTCCACCTGAGACTCAAACCC---CCCGACACCCCATTCTCCCTTAGCACCAGGGTCCCCCAGCCCCTTTCTTCAGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            410618 230 -    584178 agggctcctgacaaccagGCAGGCTAGGGCTTCTATTGAGAGG-CCACAGCGCCAGGGCAAGACAGTGGGTCAG-----GA----GAGCA---GT--GCCACTGGAAAAGACAGTGGGTCAGGAGAGCAGCAAGAGAAAGCACCAGGCTGCG-------TGCTCAGTGCTCTG------GGGTC-CCTCCAGCTGAGACGTAGGC-C---CCCGGCACTCCACTCTCCCTTGGTACCAGGGACCCCCAGCCCCTTTCTTCAGA
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1012398   0 -   1842816 C

a score=3241939.000000
s hg38.chr15_KI270851v1_alt   258959 362 +    263054 GCCCCAAGGGGAAACTGGAGCCCAGGATTGGCAGCGTGGAATCAGGGGA-CCCCACCGGACTCTTACCAAAGATTTGATGGTGTTCTTCAGTTGACTGATTTCTACGGACCTTGAATCCAGGACTACTGCTCGTTCTTGGCACGGG---CTCTGAGGTTCATGCAGAGAGGAGGAG--GTGGAGCAGGAGTCG----------GGGGAGAGGTAGAGAGAACAATCATTAGGGCTGGGG---TGT--GTGGGCTGTCTCAGCTGGCAGAGGGGCACCCAGTCCCTCCTGGAGGAGGAGGTTGGAGGGCTGACCCGA-AGGGTCACTGCACCTCTGCCCAGAGCCTCTTACCTCCAGATCTTTCAGGGTAGCAGATGATGTAGGG
s panTro5.chr15             72202890 362 -  83230942 GCCCCAAGGGGAAACTGAAGCCCAGGATTGGCAGCGTGGACTCAGGGGA-CCCCACTGGACTCTTACCAAAGATTTGATGGTGTTCTTCAGTTGACTGATTTTTACGGACCTTGAATCCAGGACTACTGCTGGTTCTTGGCACGGG---CTCTGAGGCGCATGCAGAgaggaggag--gtggagcaggagtag----------ggggagaggTAGAGAGAACAATCATTAGGGCTGGGG---TGT--GTGGGCTGTCTCAGCTGGCAGAGGGGCACCCAGTCCCACCTGGAGGAGGAGGTTGGAGGGCTGGCCTGC-AGGGTCACTGCCCCTCCGCCCAGAGCCTCTTATCTCCAGATCCTTCAGGGCAGCAGATGATGTAGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71439686 359 -  99763055 GCCCCAAGGGGAAACTGGAGCCCAGGATTGGCAGCGTGGATTCAGGGGA-CCCCACTGGACTCTTACCAAAGATTTGATGGTGTTCTTCAGTTGACTGATTTTTACGGACCTTGAATCCAGGACTACTGCTGGTTCTTGGCACGGG---CTCTGAGGCGCATGCAGA---GAGGAG--GTGGAGCAGGAGTAG----------GGGGAGAGGTAGAGAGAACAATCATTAGGGCTGGGG---TGT--GTGGGCTGTCTCAGCTGGCAGAGGGGCACCCAGTCCCACCTGGAGGAGGAGGTTGGAGGGCTGGCCTGC-AGGGTCACTGCCCCTCCGCCCAGAGCCTCTTATCTCCAGATCCTTCAGGGCAGCAGATGATGTAGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       18967 360 -    281578 G-CCCAAGGGGAAACTGGAG-CCAGGATTGGCAGCGTGGAATCAGGGGA-CCCCACCGGACTCTTACCAAAGATTTGATGGTGTTCTTCAGCCGACTGATTTTGACGGACGTTGAATCCAGGACTACTGCTCGTTCTTGGCACGGG---CTCTGAGGTGCATGCAGAgaggaggag--gtggagcaggagtgg----------ggggagaggTAGAGAGAACGATCGTTAGGGCTGGGG---TGT--GTGGGCTGTCTCAGCTGGCAGAGGGGCACCCAGTCCCACCTGGAGGAGGAGGTTGGAGGGTTGACCCGA-AGGGTCACTGCACCTCCACCCAGAGCCTCTTACCTCCAGATCTTTCAGGGTAGCAGATGATGTAGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8435927 364 + 169600520 GTCCCAAGGGGAAACTGGAGCCCAGGATTGTCAGCCTGGAATCAGGGGA-CCCCACTGGACTCTTACCAAAGATTTGATGGTGTTCTTCAGTTGACTGATTTTGACAGACCTCGAGTCCAGGACTACTGCTAGTTCTTGGGACGGG---CTCTGAGGCACATGCAGAgaggaggag--gtggaggaggagttg----------tgggagaggtagagAGAACAATCATTAGGGCTGGGG---TGTGTGTGGGCTGTCTCAGCTGGCAGAGGGGCACCCAGTCCCTGCTGTGGGAGGAGGTTGGAGGATTGGCCTGC-AGGGTCACTGCCCCTCCACCCAGAGCCTCTTACCTCCAGATCCTTGAGGGGTGCAGATGACGTAGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91234758 364 - 171882078 GCCCCAAGGGGAAACTGGAGCCCAATATTGGCAGCGTGGAATCAGGGAA-CCCCACTGGACTCTTACCAGAGATTTGATGATGTTATTCAGTTGACTGATTTTTACGGACCTTGAGTCCAGGACTACTGCTAGCTCTTGGCACAGG---CTCTGAGGCACATGCAGTgagaaggag--gtggaggaggagtcg----------ggggagaggTAGAGAGAACAATCATTAGGATTAGAG---TGTGTGTGGGCTGTCTCAACTGGCAGAGGGGCACCCAGTCCCCGCTGTGGGAGGAGGCTGGAGGGCTGGCCTGC-AGGGTCACTGCACCTCCACCCAGAGCCACTTACCTCCAGATCCTTCAGGGAAGCAGATGATGTAGGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      416040 364 -   9617498 GCCCCAAGGGGAAACTGGAGCCCAATATTGGCAGCATGGAATCAGGGAA-CCCCACTGGACTCTTACCAGAGATTTGATGATGTTATTCAGTTGACTGATTTTTACGGACCTTGAGTCCAGGACTACTGCTAGCTCTTGGCACAGG---CTCTGAGGCACATGCAGTgagaaggag--gtggaggaggagtcg----------ggggagaggTAGAGAGAACAATCATTAGGATTAGAG---TGTGTGTGGGCTGTCTCAACTGCCAGAGGGGCACCCAGTCCCCACTGTGGGAGGAGGCTGGAGGGCTGGCCTGC-AGGGTCACTGCACCTCCACCCAGAGCCACTTACCTCCAGATCCTTCAGGGAAGCAGATGATGTAGGG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4968640 360 +  14009840 GCCCCAAGGGGAAACTGGAGCCCAATATTGGCAGCGTGGAATCAGGGAA-CCCCACTGGACTCTTGCCAGAGATTTGATGGTGTTATTCAGTTGACTGATTTTTATGGACCTTGAGTCCAGGACTACTGCTAGCTCTTGGCACAGC---CTCTGAGGCACATGCAGCAagaaggag--gtggaggaggagtgg----------ggggagAGAT----AGAACAATCATTAGGATTGGGG---TGTGTGTGGGCTGTCTCAACTGGCAGAGGGGCACCCAGTCCCCACTGTGGGAGGAGGCGGGAGGGCTGGCTTGC-AGGATCACTGTACCTCCGCCCAGAGCCACTTACCTCCAGATCCTTCAGGGTAGCAGATGATGTAGGG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7583426 364 +  58131712 GCCCCAAGGGGAAACTGGAGTCCAGGATTGGCAGCACGGAATCAGGAGA-CCCCACTGGACTCTTACCAATGATTCTATGTTTTCCTTGAGTTGATTGATTGTTGCGGAGCTTGAGTCCAGGGCTACTTCCAGTTCTTGGTTCCGG---CTCTGAGGCGCATGCAGAGAGGAGCAG--TTGGAGGAGGATTGC----------GGGGAGAGGTAGAGAGAACAATCATTAGGGCTGGGG---TGTGTGTGGGCTGTCTCAGCTGGCAGAGGGGCACCCAGCTCCCGCTGTGAGAGGAGGTTGGAGGGCTGGCCTGA-AGGGTCACTGCACCTCGGCCCAGGGCCTCCTACCTCTAGATTCTTCAGGGTAGCAGATGATGCAGGG
i chlSab2.chr26             C 0 I 1342
s manLeu1.NW_012109919v1      121005 364 +   7069685 GCCCCAAGGGGAAACTGGAGCCCAATATTGGCAGCGTGGAATCAGGGAA-CCCCACTGGACTCTTGCCAGAGATTTGATGGTGTTCTTCAGTTGACTGATTTTTATGGACCTTGAGTCCAGGACTACTGCTAGCTCTTGGCACAGC---CTCTGAGGCACATGCAGCAagaaggag--gtggaggaggagtgg----------ggggagaggtagagAGAACAATCATTAGGATTGGGG---TGTGTGTGGGCTGTCTCAACTGGCAGAGGGGCACCCAGTCCCCGCTGTGGGAGGAGGCGGGAGGGCTGGCCTGC-AGGGTCACTGCACCTCCGTCCAGAGCCTCTTACCTCCAGATCCTTCAGGGTAGCAGATGATGTAGGG
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3043295 362 +   3749464 GCCCCAAGGGGAAACTGGAGCCCAGGATTGTCAGCGTGGAATCAGGGGA-CCCCACTGGACTCTTACCAAAGATTTGATGGTGTTCTTCAGTAGACTGATTTTGACCGGCCTTGAGTCCAGGACTGCTGCTAGTTCTTGGGACGGG---CTCTGAGGTGCAAGTAGAgaagaggag--gtggaggaggagt-g----------ggggagaggTAGAGAGAACGATCATTAGGGCTGGGG---TGTG-GTGGGCTGTCTCAGCTTGCAGAGAGGCACCCAGTCCCCGCTGTCGGAGGAGGTTGGAGGGCTGGCCTGC-AGGGTCACTGCACCTCCGCCCAGAGCCTCTTACCTCCAGATCCTTGAGGTATGCAGATGACGTAGGG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72459801 362 - 132174527 GCCCCAAGGGGAAAATGGAGCCCAGGATTGGCAGTGTGGAATCAGGGGA-CCCCAGTGGACTCTTACCAATAACTGAATGGTGTCATTCAGTTGACCGATTGTTCTGGAGCTCAAGTCCAGGGTTACTGCTGTTTCTTGGTAGTGC---CTCTGAGGTGAATGCAGAGAGGAGGAG--TTGGAGGAGGATTTG----------GG--GGAGGTAGAGAGAACAATCATTAGGGCTATGG---TGTATGGGGGCTGTCTGAGCTGGCAGAAGGGCACCCAGCCCCCGCTGTGGAAGGAGGCTGGAGGGCTGGCCTGC-AGGGTCACTGCACCTCGGCGCAGGGCCTCTTACCTCCATATCTTTCGCAGCAGTACATGACACAGGG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1012398 360 -   1842816 GCCCCAAGGGGAAACTGGAGCCCAGGATTGGCAGCGTGGAATCAGGGCA-CCCCACTGGGCTCTTACCAATAAATTGACGGTGTTACTCAGTTCACTGGTTGTGACGGAGCTTGAGTCCTGG------GCTATTTGTAGTTGGTGTGCGCTCTGAGGCACATGCAGAGAGGAGGAG--TTGGGGGAGGATTGG----------GG-TAGAGGTAGAGAGAACATTCATTAGGGTTGGGG---TGTGTGGGGGCTGTATCGGCTGGCAGAGGGGCACCCAGCCACCACTGTGGGAGAAGGGTGGAGGGCTGGCCTGC-AGGGTCACTGTACCTTAGCTCAGAGCCTCTTACCTCCTGATCTTTCATGGTGGCACATGGCGCAGGG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9396268 364 +  14477005 GCCCCAATGGGAAACTAGAGCCCAGGATTGGCAGCGTGGAATCAGGGGA-CCCCACTGGACTCTTACCAATTTCTCTATCGTGACATTGAGTTGTTTGTTTGTTACATAGCTGGAGTCCAGGGCTACTGCTAGCTGTTGGTACCGG---CTCTGAGGCGCATGCAGAGAGGAGGAG--TTGGAGGAGGATTGG----------GGGGAGAGGTAGAGAGAGCAATCATTAGGGTTGGGG---GGTGTGTGGGCTGTCTCAGCTGGCAGAGGGGCACCCAGCCCTCGCTGTGGGAGGAGGCTGGAGGGCTGGCCTGC-AGGGTCACTGAGCCACGGCCCAGGGCCTCTTACCTCCAGGTCTTTCAGGTTAGCAGATGATGCCGGG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30959467 358 +  31380117 GCCCCAAGGGAAAAGTGCAGCCCAGGATGGGCGACATGGCATTAGGGGACCCCCACTGGACTCTTACCAATTCCTCTACTTTGCTACTGAGTTGTTTGTTTGTTAGATAGCTGGAGTCCAGGGCTACTGCTAGCTCGTGGTACCGG---CTCTGAGGCGCATGCAGA---GAGCAG--TTGGAGGAGGGGTGG----------GGGGAGAGGTAGAGAGAGCAATCATTAGGGTTAAGG----ATCTAAGGGCTATCTCAACTGCCAGAGGGGAACTCAGCCCCTACTGTG---GGAAGTCAGGGGGCTGGCCTGC-AGGGTCACTGGGCCATAGTTCAGGGCCATTTACCTCCAAATCCTTCAGGTTAATGGACGATGAAAGG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5831770 361 -  61074082 GCCCCAGGGAAAAACTGGAGCCCCAGATTGGCAGTGTGGAATCAGGGGA-CCCCACTGGACTCTTACCAATTCCTCTATCTTGCTACTGAGTTGTTTGTTTGTTAGATTGCTGGAGTCCAGGGCTAGTGATAGCTCTTGGTACCGG---CTCTGAGGCGCATGCAga--ggaggag--gaggaggaggagTTGGACGAGGGTTGGGGAGAGGTAGAGAGAGCAGTCATTAGGGTTGGGG------------GCTGTCTGGGCTGGCAGCGGGGCACCCAGCCCCCGCTGTGGGAGGAGAT--GGGGGCTGGCCTGC-AGGGTCCTGAGACCATGGTCTAGTGCCACTTACCTCTAGATCCTTTATGTTAGCAGAAGATGCCAGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            410848 367 -    584178 GCCCCAAGGGGAAATTGGAGCCCAGGATTGGCAGCATGGACTCAGGGGA-CCCCACTGGACTCTTACCAATTCCTCTATCTTGTTAATGAGTTGATTGTTTGTTAGATTGCTGGAATCCAGGGCTACTGATAGCTCTTGGTATCGG---CTCTGAGGCGCATGCAGAGAGGAGGAGGAGTGGGAAGAGAGTTG----------GGGGAGAGGTAGAGAGAGCAATCGTTAAGGTTGGGGGGGTGTGTCTGGGCTGTCTCAACTGGCAGTGGGGCACCCAGCCCCCACTGTGGGAGGAGGTGGGGGGACTGGCCTGCAAGGGTCACCAGGCCACAGTCCAGGGCCACTTACCTCCAGATGCTTCATGTTAACAGATGTT--AGG-
i dasNov3.JH564958          C 0 C 0

a score=1436851.000000
s hg38.chr15_KI270851v1_alt   259321 200 +    263054 CCTTCCCTGTGAAAACCTGTTGCTGACTACAAGAGAT---GAGAGTG--CACATGGAGATG--TTC--TGTC-CCCCACAGTGTCTGAG-CCCTCTGACTTCCTTTCTTCCCCATCAACTGGCAAC-------ATTTTCTTTTCTGCCTATCTTGGACCCTTTGTCCCAT-AACTCCTTTGTGCCAACTTCTCTCATGGTTCTTATCTCCCCACCATCC
s panTro5.chr15             72203252 197 -  83230942 CCCTCCCCGTGGAAACCTGTTGCTGACTACAAGAGAT---GAGAGCG--CATATGGAGATG--TTC--TGTC-CCCCACAGTGTCTGAG-CCCTCTGACTTCCTTTCTTCCCCATCAACTGGCAAC-------ATTTTCTTTTCTGCTTATCTTGGACCCTTTGTCCCAT-AACTC---TGTGCCAACTTCTCTCATGGTTCTTATCTCCACATCATCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440045 197 -  99763055 CCCTCCCCGTGGAAACCTGTTGCTGACTACAAGAGAT---GAGAGCG--CATATGGAGATG--TTC--TGTC-CCCCACAGTGTCTGAG-CCCTCTGACTTCCTTTCTTCCCCATCAACTGGCAAC-------ATTTTCTTTTCTGCTTATCTTGGACCCTTTGTCCCAT-AACTC---TGTGCCAACTTCTCTCATGGTTCTTATCTCCACATCATCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       19327 200 -    281578 CCTTCCCTGTGGAAACCTGTCGCTGACTACAAGAGAT---GAGAGTG--CACATGGAGATG--TTC--TGTC-CCCCACAGTGTCTGAG-CCCTCTGACTTCCTTTCTTCCCCATCAACTGGCAAC-------ATTTTCTTTTCTGCCTATCTTGGACCTTTTGTCCCAT-AACTCCTTTGTGCCAACTTCTCTCATGGTTCTTATCTCCCCACCATCC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8436291 200 + 169600520 CCCTCTCCGTCGATACCTGTTGCTGACTACAAGAGGT---GAGAGTG--CACATGGAGATG--TTC--TGTC-CCTCTCAGTGTCTAAG-CCCTCTGACTTCCTTTTTTCCCCATCAATGGGCAAC-------ATTTTCTTTTCTGCCTATCTTGGACCCTTCGTCCCAT-AACTCCTTTGTGCCAACGTCTCTCATGGTTCTTATCTCCCCATCATCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91235122 199 - 171882078 CCCTCCCCGTGGATACCTGTTGCTGACTACAAGAGAT---GAGAGTG--TACATGGAGATG--TTC--TGAC-CCCCTCAGTGTCTAAG-CCCTCTGACTTCCTTTCTTCCCCATCAACTGGCAAC-------ATTTTCTTTTCTGCCTATCTTGGACCCTTTCTCCCAA-AACTCCTCTGTGCCAACTTCTCTCATGGTTCTTATCTCCCT-CCATCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      416404 199 -   9617498 CCCTCCCCGTGGATACCTGTTGCTGACTACAAGAGAT---GAGAGTG--TACATGGAGATG--TTC--TGAC-CCCCTCAGTGTCTAAG-CCCTCTGACTTCCTTTCTTCCCCATCAACTGGCAAC-------ATTTTCTTTTCTGCCTATCTTGGACCCTTTCTCCCAA-AACTCCTCTGTGCCAACTTCTCTCATGGTTCTTATCTCCCT-CCATCC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4969000 200 +  14009840 CCCTCCCCATGGATACCTGTTGCTGACTATAAGAGAT---GAGAGTG--CATATGGAGATG--TTC--TGTC-CCCCTCAGTGTCTAAGCCCCTCTGATTTCCTTTCTTCCCCATCAACTGGCAAC-------ATTTTCTTTTCTGCCTATCTTGGACCCTTTCTCCCAA-AACTCCTCTGTGCCAACTTCTCTCATGGTTCTTATCTACCA-CCATCC
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      121369 200 +   7069685 CCCTCCCCGTGGATACCTGTTGCTGACTACAAGAGAT---GAGAGTG--CATATGGAGATG--TTC--TGTC-CCCCTCAGTGTCTAAG-CCCTCTGACTTCCTTTCTTTCCCATCAACTGGCAAC-------ATTTTCTTTTCTGCCTATCTTGGACCCTTTCTCCCAA-AACACCTCTGTGCCAACTTCTCTCATGGTTCTTATCTCCCCACCATCC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3043657 198 +   3749464 CCCTCTCCATCGATACCTGTTGCTGACTACAAGAGAT---GAGAGTG--CACATGGAGATG--TTC--TGTC-CTTCT--GTGTCTAAG-CCCTCTGACTTCCTTTTTTCCCCATCAACTGGCACA-------ATTTTCTTTTCTGCCTATCTTGGACCCTTTGTCCCGT-AACTCCTTTGTGCCAACTTCTCTCATGGTTCTTATCTCCCCACCATCC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72460163 199 - 132174527 CCCTCTGCGTGCATACCTGTTTCTGGCTACAAGAGAT---GAGAGTG--TACATGGAAATG--TTC--TGTA-CCCT-CAGTGTCTAAG-CCCTCTAACTTCCTTTCTTTCCCATCAACTGGCAAA-------ATTTTCTATTCTGCCTATCTCAGACCCTTTGTCCCAT-AACCCCTTTGTGCCAGCTCTTCTCACGGTTCTTATCTCCCCACCCTCC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1012758 197 -   1842816 CCCACCTTGTGACCACCTGCTGCTGACTACAAGAGAT---GAAAGTG--CACATGGAGATG--TTC--TGTC-CCCT-CAGTGTCCAAG--CCTCTGACTTCCTTTCCTCCCCATCAGCTGGCAGC-------ATTTCCTGTTCTGTCTCTCTCGGACCCTTTGTCCCAT-AACACCTTTGTGCCAGTTCCTCCCGCGGTTTTTATCT-CCCACCATCC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9396632 200 +  14477005 CCCTCCCCATTGACACATGTTGTAGACTGTAAGAGAC---GAGAATG--CACATGGAGATG--TTC--TGTC-GTCC-CAGTGTCTAAG-CCCTCTGACTTCCTTTCTTCCCCTTCATCTGGCAAC-------ATTTTCTTTTCTGCCTAACTTGGACCCTTTGTCCCGTAAACCCTTTTGTGCCAACTTCTCTCATGGTTCTTATTTCCCCACCATCC
i aotNan1.NW_018502759v1    C 0 I 5918
s otoGar3.GL873533          30959825 203 +  31380117 CTTGTTCCATTGACATAGGACGTAGACTAAAAGAGAT---GAGGGTC--TACTCAGTGATG--CTC--TGTCTCCTCACAG---CTAAG-CCCTGTGACTTCCTTTCTTCCCCATCAACTTTCTTCCCTATCAATTTTTTTTTCTGGCTAACTTGGACCCCTCCTCTCAT-AATCCCTTCCTACCAACT--TCTCAGCATTCTTATCTCTCCATCATCC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5832131 181 -  61074082 CCCTCCCCATTGATGTAGGATGAAGACTAGGAGACAC---GAAAGGGCTCACATGGAGGCGCACTC--TGCC-CGCCCCAGTACCTAAG-CCCTCTGACTCCTCATCCTGCCCATCAGCTGCAAAC-------------TTTTCTGCCTAACT--------------AAC-CCCTCCTTTGTGCCA---CTCCTCCTGGTTCTTAGCCCCCCGTCATCA
i canFam3.chr9              C 0 I 4616
s dasNov3.JH564958            411215 202 -    584178 CCCTCACCATTGAAGTAGGATGAAGACTAGAAGAGATTGAAAGATCT--CACATGGAGATG--CTCTTTGTC-CCCAAAAGCACCTGAG-CTGTTTGACTTCCTTTTTTCCCCACCAACTGGCAAG-------AGTTTATTTTATGCCAAATTTGGGCCTATCTTCTTAC-AATCCCT-TATGCCACCT--TTCCGTGGTTCTTATCGTCCTATCCTTC
i dasNov3.JH564958          C 0 C 0
e chlSab2.chr26              7583790 1342 +  58131712 I

a score=38908.000000
s hg38.chr15_KI270851v1_alt   259521 5 +    263054 CATCC
s panTro5.chr15             72203449 5 -  83230942 CACCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440242 5 -  99763055 CACCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       19527 5 -    281578 CATCC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8436491 5 + 169600520 CACCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91235321 5 - 171882078 CACCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      416603 5 -   9617498 CACCC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4969200 5 +  14009840 CACCC
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      121569 5 +   7069685 CACCC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3043855 5 +   3749464 CACCC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72460362 5 - 132174527 CACTC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1012955 5 -   1842816 CACCC
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30960028 5 +  31380117 CTCCC
i otoGar3.GL873533          C 0 I 7468
s canFam3.chr9               5836928 5 -  61074082 CACCC
i canFam3.chr9              I 4616 C 0
s dasNov3.JH564958            411417 5 -    584178 TTCCC
i dasNov3.JH564958          C 0 I 3852
e aotNan1.NW_018502759v1     9396832 5918 +  14477005 I
e chlSab2.chr26              7583790 1342 +  58131712 I

a score=115550.000000
s hg38.chr15_KI270851v1_alt   259526 19 +    263054 TGGGGCCCTTTCAGTGACT
s panTro5.chr15             72203454 19 -  83230942 TGGGGCCCTTTCAGTGACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440247 19 -  99763055 TGGGGCCCTTTCAGTGACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       19532 19 -    281578 TGGGGCCCCTTCAGTGACT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8436496 19 + 169600520 TGGGGCCCTTTCTGTGACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91235326 19 - 171882078 TGGGACCCTTTCAGTGAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      416608 19 -   9617498 TGGGACCCTTTCAGTGAGT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4969205 19 +  14009840 TGGGACCCTTTCAGTGACT
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      121574 19 +   7069685 TGGGACCCTTTCAGTGAGT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3043860 19 +   3749464 TGGGGCCCTTTCAGTGACT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72460367 19 - 132174527 TGGGGCTCTTTCAGTGACT
i calJac3.chr10             C 0 I 13
s cebCap1.NW_016107745v1     1012960 19 -   1842816 TGGGGCCCTTTCAGTGACT
i cebCap1.NW_016107745v1    C 0 I 13
s canFam3.chr9               5836933 19 -  61074082 TGGGTCTCTTTTGGTGCTT
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958            411422 3852 -    584178 I
e aotNan1.NW_018502759v1     9396832 5918 +  14477005 I
e otoGar3.GL873533          30960033 7468 +  31380117 I
e chlSab2.chr26              7583790 1342 +  58131712 I

a score=9577.000000
s hg38.chr15_KI270851v1_alt   259545  2 +    263054 -------------CC
s panTro5.chr15             72203473  2 -  83230942 -------------CC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440266  2 -  99763055 -------------CC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       19551  2 -    281578 -------------CC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8436515  2 + 169600520 -------------CC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91235345  2 - 171882078 -------------CC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      416627  2 -   9617498 -------------CC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4969224  2 +  14009840 -------------CC
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7585132  2 +  58131712 -------------CC
i chlSab2.chr26             I 1342 C 0
s manLeu1.NW_012109919v1      121593  2 +   7069685 -------------CC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3043879  2 +   3749464 -------------CC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72460399  2 - 132174527 -------------GC
i calJac3.chr10             I 13 C 0
s cebCap1.NW_016107745v1     1012992  2 -   1842816 -------------CC
i cebCap1.NW_016107745v1    I 13 C 0
s aotNan1.NW_018502759v1     9402750  2 +  14477005 -------------CC
i aotNan1.NW_018502759v1    I 5918 C 0
s otoGar3.GL873533          30967501  2 +  31380117 -------------CC
i otoGar3.GL873533          I 7468 C 0
s canFam3.chr9               5836952 15 -  61074082 CCTATAGGGACAGTG
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958            411422 3852 -    584178 I

a score=1097278.000000
s hg38.chr15_KI270851v1_alt   259547 133 +    263054 TGATGGCAAGTGGCTGTTCTCATTGTCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAATC----------------AAACAGCAAAGACCATATCCTGGGTGTCCTGAGTGTTTACAGCAGGCCATGTACT-AGGGA-TTAACATAAAA--
s panTro5.chr15             72203475 125 -  83230942 TGATGACAAGTGACTGTTCTCATTGTCCTGGCTTTCCCTTGAGACTGGGGATGAGGAAAATC----------------AAACAGCAA--------TGCTGGGTGTCCTGGGTGTTTACGACAGGCCATGTACT-AGGGA-TTAACATAAAA--
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440268 125 -  99763055 TGATGACAAGTGACTGTTCTCATTGTCCTGGCTTTCCCTTGAGACTGGGGATGAGGAAAATC----------------AAACAGCAA--------TGCTGGGTGTCCTGGGTGTTTACGGCAGGCCATGTATT-AGGGA-TTAACATAAAA--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       19553 130 -    281578 TGATGGCAAGTGGCTGTTCCCATTGTCCTGGTTTCCCCTTGAGACTGGGGATGAGGAAAATC-----------------AACAGCAA--ACCATATCCTGGGTGTCCTGAGTGTTTACAGCAGGCCATGTACT-AGGGA-TTAACATAAAA--
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8436517 132 + 169600520 TGATGGCAAATGGCTGTTCTCATTGTCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAATC----------------AAACAGCAATGACCATATCCT-GGTGTCCTGGGTGTTTACAGTAGGCCATGTACT-AGGGA-TTAACATAAAA--
i rheMac8.chr7              C 0 I 488
s macFas5.chr7              91235347 133 - 171882078 TGATGGCAAGTGACTGTTCTCATTGTCCTGGTTTCCCCTTGAGACTGGGGATGAGGAAAATC----------------AAACAGCAATGACAATATCCTGGGTGTCCTGGGTGTTTACAGCAGGTCATGTACT-AGGGA-TTAACATAAAA--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      416629 133 -   9617498 TGATGGCAAGTGACTGTTCTCATTGTCCTGGTTTCCCCTTGAGACTGGGGATGAGGAAAATC----------------AAACAGCAATGACAATATCCTGGGTGTCCTGGGTGTTTACAGCAGGTCATGTACT-AGGGA-TTAACATAAAA--
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4969226 132 +  14009840 TGATGGCAAGTGGCTGTTCTCATTGTCCTGGCTTCCCC-TGAGACTGGGGATGGGGAAAATC----------------AAACAGCAATGACCATATCCTGTATGTCCTGGGTGTTTACAGCAGGCCATGTACT-AGGGA-TTAACATAAAA--
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7585134 133 +  58131712 TGATGGCAAGTGACTGTACTCATTGGCCCAGGTTCCCTTTGAGACTGGGGATGAGGAAAATC----------------AAACAGCAATGACCATTTCCTGGGTGTCCTGGGTGTTTACAGCAGACCATATACT-AGGGA-TTCACATAAAA--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      121595 133 +   7069685 TGATGGCAAGTGACTGTTCTCATTGTCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAATC----------------AAACAGCAATGACCATATCCTGGGTGTCCTGGGTGTTTACAGTAGGCCATGTACT-AGGGA-TTAACATAAAA--
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3043881 130 +   3749464 TGATGGCAAATGGCTGTTCTCTTTGTCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAATC----------------AAACAGCAATGACCATATCCT-GGTGTCCTGGGTGTTTACAGCAGGCTATATACT-AGGGA-TTAACATAA----
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72460401 133 - 132174527 TGATGGGAAGTGGCTGTTCTCATTGGCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAACC----------------AAACAGCAACGACCATTTCCTGGGTGTCCTGGCTCTTTACAGCAGGCCATGTACT-AGAGA-TTAACATAAAA--
i calJac3.chr10             C 0 I 3
s cebCap1.NW_016107745v1     1012994 132 -   1842816 TGACAGCAAGTGGCTGTTGTCATTGGGCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAGTC----------------AAACAGCAAGGACCATTTCCTGGGTGTCCTGGGTGTTTACAGCAGACCATGTACT-AGGGA-TTAACA-AAAA--
i cebCap1.NW_016107745v1    C 0 I 3
s aotNan1.NW_018502759v1     9402752 133 +  14477005 TGATGACAAGTGGCTGTTCTCATTGGCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAATG----------------Aaacagcaactaccatttcctgggtgtcctaagtgtttacagcaggtcctgtact-aggga-ttaacataaac--
i aotNan1.NW_018502759v1    C 0 I 3
s otoGar3.GL873533          30967503 127 +  31380117 TAATGGCAAGCGGCCATTCTCACTGGCCTTACTTCCCC-TGAGGCTGGAGATGAGAAAAATC----------------Aaatagcgactaccatttatggaatgttt----attctataccatgcc-tgtact-gagaa-ttaatataaaa--
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5836967 140 -  61074082 TGATGGCAGATGGCTATTCTCACTGCCTGGCTTCCCCCCTGAAGCCAGGGATGAGGAAAGTCACCAGGTCAGTATGTCAAATAGGAC------TACCCTTGA----CTGAATGCTTATCCCACACCAGGCCCTAAGGGA-TTAATATAAAA--
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            415274 145 -    584178 TGATGGCAAGTGCCAGTTAGCA---GCTTGGCTTCTCCTTGAGGCTGGGAATGAGCAAAATCACCTAGGCAATAGCTAAaataggaactaccatttactgaatgttt----actctgtcccagaccctctact-aaggactttatatataaat
i dasNov3.JH564958          I 3852 C 0

a score=73857.000000
s hg38.chr15_KI270851v1_alt   259680 10 +    263054 ACAACAATAA
s panTro5.chr15             72203600 10 -  83230942 ACAACAAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440393 10 -  99763055 ACAACAAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       19683 10 -    281578 ACAACAATAA
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              91235480 10 - 171882078 ACAACAATAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      416762 10 -   9617498 ACAACAACAA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4969358 10 +  14009840 ACAACAATAA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7585267 10 +  58131712 ACAACAACAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      121728 10 +   7069685 ACAACAATAA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3044011  8 +   3749464 --AACAATAA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72460537 10 - 132174527 ACAACAATCA
i calJac3.chr10             I 3 C 0
s cebCap1.NW_016107745v1     1013129 10 -   1842816 ACAGCAATAA
i cebCap1.NW_016107745v1    I 3 C 0
s aotNan1.NW_018502759v1     9402888 10 +  14477005 acaacagtaa
i aotNan1.NW_018502759v1    I 3 C 0
s otoGar3.GL873533          30967630 10 +  31380117 acagcaacca
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5837107 10 -  61074082 ACAACATCAA
i canFam3.chr9              C 0 I 286
s dasNov3.JH564958            415419  7 -    584178 ---acagaaa
i dasNov3.JH564958          C 0 C 0
e rheMac8.chr7               8436649 488 + 169600520 I

a score=273977.000000
s hg38.chr15_KI270851v1_alt   259690 40 +    263054 C---aaatctcatgaaaatttc-acaaatggaagtgaaacaata
s panTro5.chr15             72203610 40 -  83230942 C---AAatctcatttaaacttc-acaaatggaagtcaaacaata
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440403 40 -  99763055 C---AAatctcatttaaacttc-acaaatggaagtcaaacaata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       19693 40 -    281578 C---AAatctcatttaaacttc-acaaatggaagtgaaacaata
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              91235490 40 - 171882078 C---AAatctcatttaaacttc-acaaatggaagtcaaacaata
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      416772 40 -   9617498 C---AAatctcatttaaacttc-acaaatggaagtcaaacaata
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4969368 40 +  14009840 C---AAatctcatttaagcttc-acaaatggaagtcaaacaata
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7585277 43 +  58131712 TATGAAatctcatttaaacttc-acaaatggaagtcaaaccacg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      121738 40 +   7069685 C---AAATCTCATTTAAACTTC-ACAAATGGAAGTCAAACAATA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3044019 40 +   3749464 C---AAatctcatttaaacctc-acaaatggaagtcaaacaata
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72460547 39 - 132174527 C---AAatctcatttaaacttc-acaaatagaattcaaa-aatg
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1013139 40 -   1842816 C---GAatctcatttcaccctc-acaaatggaagtcagacaata
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9402898 40 +  14477005 c---aaatctcatttaaacttc-acaagtgtaaataaaacaata
i aotNan1.NW_018502759v1    C 0 I 89
s otoGar3.GL873533          30967640 41 +  31380117 a---aaacctcatttaaacttctataagtataagtaaaacagta
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958            415426 34 -    584178 --------ctcctttaaacttc-acaagtgtaaataaaacatt-
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9               5837117 286 -  61074082 I
e rheMac8.chr7               8436649 488 + 169600520 I

a score=113599.000000
s hg38.chr15_KI270851v1_alt   259730 21 +    263054 acacctc---------------tattatacagatgt
s panTro5.chr15             72203650 21 -  83230942 ccatctc---------------tgttatacagatgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440443 21 -  99763055 ccatctc---------------tgttatacagatgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       19733 21 -    281578 ccacctc---------------tattatacagatgt
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              91235530 21 - 171882078 ccacctc---------------tattatacagatgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      416812 21 -   9617498 ccacctc---------------tattatacagatgt
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4969408 21 +  14009840 ccacctc---------------tattatacagatgt
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7585320 21 +  58131712 ctacccc---------------tattttacagatgt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      121778 21 +   7069685 CCACCTC---------------TATTATACAGATGT
i manLeu1.NW_012109919v1    C 0 I 472
s colAng1.NW_012115677v1     3044059 36 +   3749464 ataccacctatattatatagattattatatagatgt
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72460586 21 - 132174527 ccacttg---------------tattttacagatgt
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1013179 21 -   1842816 ccactta---------------tattttacagatgt
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30967681 21 +  31380117 ttacccc---------------tattttacacgtgt
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958            415460 19 -    584178 --atccc---------------tgttttacagacat
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9               5837117 286 -  61074082 I
e aotNan1.NW_018502759v1     9402938 89 +  14477005 I
e rheMac8.chr7               8436649 488 + 169600520 I

a score=269080.000000
s hg38.chr15_KI270851v1_alt   259751 57 +    263054 gaaaagagaggcccgatgaggtctagcaacttgccctaaatcatatccctagcagag-
s panTro5.chr15             72203671 56 -  83230942 aaaaagagaggcccaaagagctcaagcaacttgccgtaaatcatatccctaccagg--
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440464 56 -  99763055 aaaaagagaggcccaaagagctcaagcaacttgccgtaaatcatatccctaccagg--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       19754 57 -    281578 gaaaacagaggcccaatgaggtcaagcaacttgccctaaatcatatccctagcagag-
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              91235551 56 - 171882078 aaaaagagagacccaaagagttcaagcaacttgccctacatcatatccctagcaga--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      416833 56 -   9617498 aaaaagagagacccaaagagttcaagcaacttgccctacatcatatccctagcaga--
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4969429 56 +  14009840 aaaaagagagacccaaagagctcaagcaacttgccctatatcacatccctagcagt--
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7585341 55 +  58131712 gaaaagagaggcccaaggagctcaagcaac-tgacacaaatcagatccctagcaga--
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3044095 56 +   3749464 gcaaagagaggcccaaagagctcaagcaacttgacctaaattatatccctggcaga--
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72460607 56 - 132174527 gaaaagagaggcccaaagagctcaagaaacttgccctaaatcgtatccctagcaga--
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1013200 55 -   1842816 gaaaggagaggcccaaaaagctccagcaacttgccct-aatcatatccctagcaga--
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30967702 48 +  31380117 gaaaagagaagccc--------caaacaatttgccctaaatcatatccctagcagt--
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958            415479 57 -    584178 gtaaacagaggcctaaagatcttaaacaatttctccaaaatcatacccctagcaga-g
i dasNov3.JH564958          C 0 I 6
e canFam3.chr9               5837117 286 -  61074082 I
e aotNan1.NW_018502759v1     9402938 89 +  14477005 I
e manLeu1.NW_012109919v1      121799 472 +   7069685 I
e rheMac8.chr7               8436649 488 + 169600520 I

a score=76966.000000
s hg38.chr15_KI270851v1_alt   259808 20 +    263054 cagat------ggagaggcaggattc
s panTro5.chr15             72203727 16 -  83230942 ----t------ggagaggcaggatgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440520 16 -  99763055 ----c------ggagaggcaggatgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       19811 20 -    281578 cagat------ggagaggcaggattc
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              91235607 16 - 171882078 ----c------ggagaggcaggattc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      416889 16 -   9617498 ----c------ggagaggcaggattc
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4969485 16 +  14009840 ----t------ggagaggcaggattc
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7585396 16 +  58131712 ----t------ggagaggcaggattc
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3044151 16 +   3749464 ----t------ggagaggcaggattc
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72460663 22 - 132174527 ----tgcagaggcagaggcaggattc
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1013255 16 -   1842816 ----t------ggagaggcaggattc
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30967750 16 +  31380117 ----g------ggaaaggtagaattc
i otoGar3.GL873533          C 0 C 0
e dasNov3.JH564958            415536  6 -    584178 I
e canFam3.chr9               5837117 286 -  61074082 I
e aotNan1.NW_018502759v1     9402938 89 +  14477005 I
e manLeu1.NW_012109919v1      121799 472 +   7069685 I
e rheMac8.chr7               8436649 488 + 169600520 I

a score=20515.000000
s hg38.chr15_KI270851v1_alt   259828 4 +    263054 aaac
s panTro5.chr15             72203743 4 -  83230942 aaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440536 4 -  99763055 aaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       19831 4 -    281578 aaac
i gorGor5.CYUI01000141v1    C 0 C 0
s macFas5.chr7              91235623 4 - 171882078 aaac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      416905 4 -   9617498 aaac
i macNem1.NW_012017799v1    C 0 T 67711
s cerAty1.NW_012001627v1     4969501 4 +  14009840 aaac
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7585412 4 +  58131712 aaac
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3044167 4 +   3749464 aaac
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72460685 4 - 132174527 aaac
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1013271 4 -   1842816 aaac
i cebCap1.NW_016107745v1    C 0 C 0
e dasNov3.JH564958            415536 6 -    584178 I
e canFam3.chr9               5837117 286 -  61074082 I
e aotNan1.NW_018502759v1     9402938 89 +  14477005 I
e otoGar3.GL873533          30967766 0 +  31380117 C
e manLeu1.NW_012109919v1      121799 472 +   7069685 I
e rheMac8.chr7               8436649 488 + 169600520 I

a score=3321.000000
s hg38.chr15_KI270851v1_alt   259832 1 +    263054 c
s panTro5.chr15             72203747 1 -  83230942 c
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440540 1 -  99763055 c
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       19835 1 -    281578 c
i gorGor5.CYUI01000141v1    C 0 C 0
s macNem1.NW_012017799v1      349198 1 -   9617498 c
i macNem1.NW_012017799v1    T 67711 C 0
s cerAty1.NW_012001627v1     4969505 1 +  14009840 t
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7585416 1 +  58131712 c
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3044171 1 +   3749464 c
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72460689 1 - 132174527 c
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1013275 1 -   1842816 c
i cebCap1.NW_016107745v1    C 0 C 0
e dasNov3.JH564958            415536 6 -    584178 I
e canFam3.chr9               5837117 286 -  61074082 I
e aotNan1.NW_018502759v1     9402938 89 +  14477005 I
e otoGar3.GL873533          30967766 0 +  31380117 C
e manLeu1.NW_012109919v1      121799 472 +   7069685 I
e rheMac8.chr7               8436649 488 + 169600520 I
e macFas5.chr7              91235627 0 - 171882078 C

a score=11952.000000
s hg38.chr15_KI270851v1_alt   259833 4 +    263054 caga
s panTro5.chr15             72203748 4 -  83230942 cagA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440541 4 -  99763055 cagA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       19836 4 -    281578 caga
i gorGor5.CYUI01000141v1    C 0 C 0
s macNem1.NW_012017799v1      349199 4 -   9617498 cagA
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7585417 4 +  58131712 gaga
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012115677v1     3044172 4 +   3749464 caga
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72460690 4 - 132174527 caga
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1013276 4 -   1842816 caga
i cebCap1.NW_016107745v1    C 0 C 0
e dasNov3.JH564958            415536 6 -    584178 I
e canFam3.chr9               5837117 286 -  61074082 I
e aotNan1.NW_018502759v1     9402938 89 +  14477005 I
e otoGar3.GL873533          30967766 0 +  31380117 C
e manLeu1.NW_012109919v1      121799 472 +   7069685 I
e cerAty1.NW_012001627v1     4969506 0 +  14009840 C
e rheMac8.chr7               8436649 488 + 169600520 I
e macFas5.chr7              91235627 0 - 171882078 C

a score=10444.000000
s hg38.chr15_KI270851v1_alt   259837 4 +    263054 attc
s panTro5.chr15             72203752 4 -  83230942 ATTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440545 4 -  99763055 ATTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       19840 4 -    281578 attc
i gorGor5.CYUI01000141v1    C 0 C 0
s macNem1.NW_012017799v1      349203 4 -   9617498 ATTC
i macNem1.NW_012017799v1    C 0 I 1
s chlSab2.chr26              7585421 4 +  58131712 attc
i chlSab2.chr26             C 0 I 15
s colAng1.NW_012115677v1     3044176 4 +   3749464 attc
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72460694 4 - 132174527 attc
i calJac3.chr10             C 0 C 0
e dasNov3.JH564958            415536 6 -    584178 I
e canFam3.chr9               5837117 286 -  61074082 I
e aotNan1.NW_018502759v1     9402938 89 +  14477005 I
e otoGar3.GL873533          30967766 0 +  31380117 C
e cebCap1.NW_016107745v1     1013280 0 -   1842816 C
e manLeu1.NW_012109919v1      121799 472 +   7069685 I
e cerAty1.NW_012001627v1     4969506 0 +  14009840 C
e rheMac8.chr7               8436649 488 + 169600520 I
e macFas5.chr7              91235627 0 - 171882078 C

a score=41.000000
s hg38.chr15_KI270851v1_alt   259841 7 +    263054 c-tttttt
s panTro5.chr15             72203756 8 -  83230942 CAtttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440549 7 -  99763055 C-Attttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       19844 1 -    281578 c-------
i gorGor5.CYUI01000141v1    C 0 C 0
s macNem1.NW_012017799v1      349208 6 -   9617498 --TTGttt
i macNem1.NW_012017799v1    I 1 I 6
s colAng1.NW_012115677v1     3044180 6 +   3749464 --tttttT
i colAng1.NW_012115677v1    C 0 M 2155
s calJac3.chr10             72460698 7 - 132174527 -ctttttt
i calJac3.chr10             C 0 C 0
e dasNov3.JH564958            415536 6 -    584178 I
e canFam3.chr9               5837117 286 -  61074082 I
e aotNan1.NW_018502759v1     9402938 89 +  14477005 I
e otoGar3.GL873533          30967766 0 +  31380117 C
e cebCap1.NW_016107745v1     1013280 0 -   1842816 C
e manLeu1.NW_012109919v1      121799 472 +   7069685 I
e cerAty1.NW_012001627v1     4969506 0 +  14009840 C
e rheMac8.chr7               8436649 488 + 169600520 I
e chlSab2.chr26              7585425 15 +  58131712 I
e macFas5.chr7              91235627 0 - 171882078 C

a score=303102.000000
s hg38.chr15_KI270851v1_alt   259848 292 +    263054 ttttttttctttgagacagagtcttgctctgtc--accaggctggagtgcggtggcataatcttggct-actgcaagctccacctcccaggttcacaccattctcttgcctcagccttctgagtagctgggactacaggcacacgccaccacgcttggctaatgtttttgtattttt-agtagagacagggtttcaccgtgttaaccaggatggtctcgatctcctgacgtcatgatccgcctgccttggcctcccaaagtgctaggattacaggcgtgggccaccacacccggcT
s panTro5.chr15             72203764 293 -  83230942 ttttttttttttgagacggagtctcgctctttc---ccaggctagagtgcagtggcacaatctcggcttactgcaagctctgcctcctgggttcatgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccaccaccatgcctggcaaatttctttgtattttttagtagagacggggtttcaccatgttagccaggatggtctcaatctcctgaccttgtgatccacctgccttggtctcccaaagtgctaggattacaggcgtgagccagcacacctggcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440556 293 -  99763055 ttttttttttttgagacggagtctcgctctttc---ccaggctagagtgcagtggcacaatctcggcttactgcaagctctgcctcctgggttcatgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccaccaccatgcctggcaaatttctttgtattttttagtagagacggggtttcaccatgttagccaggatggtctcaatctcctgaccttgtgatccacctgccttggtctcccaaagtgctaggattacaggcgtgagccagcacacctggcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       19845 289 -    281578 -tttttttttttgagacagagtcttgctctgtc--accaggctggagtgcggtggcatgatcttggcc-actgcaagctccacctcccaggttcacaccattctcttgcctcagccttctgagtagctgggactacaggcacacgccaccacg-gtggctaatgtttttgtattttt-agtagagacagggtttcaccatgttaaccaggatggtctcgatctcctgacctcatgatccgcctgtcttggcctccc-aagtgctaggattacaggcgtgggccaccacacccggct
i gorGor5.CYUI01000141v1    C 0 C 0
s macNem1.NW_012017799v1      349220 294 -   9617498 tttcctttttatgagatggaatcttgctctgtct-cccaggctggagcacagtggcgagatcttggctcactgcaagctccgcctcctaggttcatgccattctcctgcctcagcctcccgagcagctgggaatacaggcacccaccaccatg-ctggctaatttttttgtatttttcagtgaagacggggtttcaccatgttaggcaggatggtgtcaattttctgaccttgtgatctgcccagggtggtctcccaaagtgctgggattacaagtgtgagccacggtgcccggcT
i macNem1.NW_012017799v1    I 6 C 0
s calJac3.chr10             72460705 293 - 132174527 -tttttttttttgagacggcatttcactctcgttacccaggctggagtgcaatggtgtgatctcggctcaccgcaacctccgcctcctgggttcaggcaattcttctgcctcagcctcctgagtagctgggattacaggcacatgccaccatgcccagctaat-tttttgtattttt-agtagagacggggtttcaccatgttgaccagaatggtctcggtttcttgacctggcgatccacccgcctcggcttcccaaagtgctgggattaaaggcgtgagtcaccgcgcccagcc
i calJac3.chr10             C 0 C 0
e dasNov3.JH564958            415536   6 -    584178 I
e canFam3.chr9               5837117 286 -  61074082 I
e aotNan1.NW_018502759v1     9402938  89 +  14477005 I
e otoGar3.GL873533          30967766   0 +  31380117 C
e cebCap1.NW_016107745v1     1013280   0 -   1842816 C
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M
e manLeu1.NW_012109919v1      121799 472 +   7069685 I
e cerAty1.NW_012001627v1     4969506   0 +  14009840 C
e rheMac8.chr7               8436649 488 + 169600520 I
e chlSab2.chr26              7585425  15 +  58131712 I
e macFas5.chr7              91235627   0 - 171882078 C

a score=5760.000000
s hg38.chr15_KI270851v1_alt   260140 4 +    263054 AAAG
s panTro5.chr15             72204057 4 -  83230942 AAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440849 4 -  99763055 AAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       20134 4 -    281578 aaag
i gorGor5.CYUI01000141v1    C 0 C 0
s macNem1.NW_012017799v1      349514 4 -   9617498 AAAC
i macNem1.NW_012017799v1    C 0 I 67391
s calJac3.chr10             72460998 4 - 132174527 taaa
i calJac3.chr10             C 0 I 1
s otoGar3.GL873533          30967766 4 +  31380117 aaac
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5837403 4 -  61074082 AGAG
i canFam3.chr9              I 286 I 1
s dasNov3.JH564958            415542 4 -    584178 aaag
i dasNov3.JH564958          I 6 C 0
e aotNan1.NW_018502759v1     9402938 89 +  14477005 I
e cebCap1.NW_016107745v1     1013280 0 -   1842816 C
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M
e manLeu1.NW_012109919v1      121799 472 +   7069685 I
e cerAty1.NW_012001627v1     4969506 0 +  14009840 C
e rheMac8.chr7               8436649 488 + 169600520 I
e chlSab2.chr26              7585425 15 +  58131712 I
e macFas5.chr7              91235627 0 - 171882078 C

a score=4190.000000
s hg38.chr15_KI270851v1_alt   260144 1 +    263054 C
s panTro5.chr15             72204061 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440853 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       20138 1 -    281578 c
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8437137 1 + 169600520 c
i rheMac8.chr7              I 488 C 0
s macFas5.chr7              91235627 1 - 171882078 c
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      416909 1 -   9617498 c
i macNem1.NW_012017799v1    I 67391 C 0
s calJac3.chr10             72461003 1 - 132174527 c
i calJac3.chr10             I 1 C 0
s aotNan1.NW_018502759v1     9403027 1 +  14477005 c
i aotNan1.NW_018502759v1    I 89 C 0
s otoGar3.GL873533          30967770 1 +  31380117 t
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958            415546 1 -    584178 c
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9               5837407 1 -  61074082 I
e cebCap1.NW_016107745v1     1013280 0 -   1842816 C
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M
e manLeu1.NW_012109919v1      121799 472 +   7069685 I
e cerAty1.NW_012001627v1     4969506 0 +  14009840 C
e chlSab2.chr26              7585425 15 +  58131712 I

a score=124686.000000
s hg38.chr15_KI270851v1_alt   260145 24 +    263054 CAGAATTCTTAACCCGTACCCAGC
s panTro5.chr15             72204062 24 -  83230942 CAGAATTCTTAACCATCACCCAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440854 24 -  99763055 CAGAATTCTTAACCATCACCCAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       20139 24 -    281578 cagaattcttaaccagtaCCCAGC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8437138 24 + 169600520 cagaattctgaaccagtacccaac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91235628 24 - 171882078 cagaattcttaaccagtacctaac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      416910 24 -   9617498 cagaattcttaaccagtacctaac
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4969506 24 +  14009840 cagaattcttaaccagtacctaac
i cerAty1.NW_012001627v1    C 0 C 0
s calJac3.chr10             72461004 24 - 132174527 cagaattcttaaccagtaCCTGAC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9403028 24 +  14477005 cagaactcttaacCAGTACCAGAC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30967771 24 +  31380117 cagtactcttacccagtacccaac
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5837408 23 -  61074082 TAGGATTC-AAATCCGTACCTGAC
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958            415547 24 -    584178 cagaattcttaaccagtacttgat
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1013280  0 -   1842816 C
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M
e manLeu1.NW_012109919v1      121799 472 +   7069685 I
e chlSab2.chr26              7585425 15 +  58131712 I

a score=42711.000000
s hg38.chr15_KI270851v1_alt   260169 10 +    263054 ---AGTCCATCCA
s panTro5.chr15             72204086 10 -  83230942 ---AGTCCATCCG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440878 10 -  99763055 ---AGTCCATCCG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       20163 10 -    281578 ---AGTCCATCCA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8437162 10 + 169600520 ---agtccattca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91235652 10 - 171882078 ---agtccatccc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      416934 10 -   9617498 ---agtccatccc
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4969530 10 +  14009840 ---agtccatccc
i cerAty1.NW_012001627v1    C 0 C 0
s calJac3.chr10             72461028 10 - 132174527 ---AGTCTATCCA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1013280 10 -   1842816 ---agttcttcca
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9403052 10 +  14477005 ---AGTTCTTCCA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30967795 10 +  31380117 ---actttttcca
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5837431 10 -  61074082 ---ATCTCCTCCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            415571 13 -    584178 actttctcttcca
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M
e manLeu1.NW_012109919v1      121799 472 +   7069685 I
e chlSab2.chr26              7585425 15 +  58131712 I

a score=2012264.000000
s hg38.chr15_KI270851v1_alt   260179 319 +    263054 CAATCTTAACAATTACCCTCTATTGCCCCTTGGG------------C-CCCCTGTCCCCAGAAGCCTGGTCAGCCAAGACTCACATCCCCAGGTGGCTGGCAACCACCAGAAGTGGCTGTCTGAGGGATACTGCCATTT---GTTTTCCTGTTCCTGTTCGCTCCTGCTGGAACTCTAGGGCTGTTTTTCTGCCAATATTCTTTTAACTGTTGGAAAGAAGAGCAGTAATACTCATGAGAACCGTCAGCCCCTACAGCCACATC-------------------------------------CTCCTTTACAGTTTTTACAAAATACACT-TACA--CACTATCTGATTTAATGAC-ACCAACAACTGTACAAGGTG
s panTro5.chr15             72204096 319 -  83230942 CGATCTTAACAATTACCCTCTATTGCCCCTTGGG------------C-CCCCTGTCCCCAGAAGCCTGGCCAGCCAAGACTCACATCCCCAGGTGACTGGCAACCACCAGAAGTGGCTGTCTCAGGGATACTGCCATTT---GTTTTCCTGTTCCTCTTGGCTCCTGCTGGAACTCTAGGGCTGTTTTTCTGCCAATATTCTTTTAACTGTGGGAAAGAAGAGCAGTAATACTCATAAGAACTGTCAGCCCCTGCAGCCACATC-------------------------------------CTCCTTTACAGTTTTTACAAAATACTCT-TATA--CACCATCTGATTTAACAAC-ACCAACAACTGTACAAGGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71440888 319 -  99763055 CGATCTTAACAATTACCCTCTATTGCCCCTTGGG------------C-CCCCTGTCCCCAGAAGCCTGGCCAGCCAAGACTCACATCCCCAGGTGACTGGCAACCACCAGAAGTGGCTGTCTCAGGGATACTGCCATTT---GTTttcctgttcctcttggctcctgctggaactctagggctgtttttctgccaatattcttttaactgtgggaaagaagagcagtaatactcataagaactgtcagcccctacagccacatc-------------------------------------ctcctttacagtttttaCAAAATACTCT-TATA--CACCATCTGAATTAACAAC-ACCAACAACTGTACAAGGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       20173 319 -    281578 CAATCTTAACAATTACCCTCTATTGCCCCTTGGG------------C-CCCCTGTCCCCAGAAGCCTGGTCAGCCAAGACTCACATCCCCAGGTGGCTGGCAACCACCAGAAGTGGCTGTCTCAGGGATACTGCCATTT---GTTTTTCTGTTCCTGTTCGTTCCTGCTGGAACTCTAGGGCTGTTTTTCTGCCAGTATTCTTTTAACTGTTGGAAAGAAGAGCAGTAATATTCATGAGAACCGTCAGCCCCTACAGCCACATC-------------------------------------CTCCTTTACAGTTTTTACAAAATACACT-TACA--CATCATCTGATTTAATGAC-ACCAACAACTGTACAAGGTG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8437172 319 + 169600520 caatcttaacaattaccctctactgCCCCTTGGG------------A-CCCCTGTCCCCAGGAGCCTGGTCAGCCAAGACTCACATCCCCAGGTGAGTGGGAACCACCAGAAGTGGCTGTCTTAGGGACACTGCCATTT---GTTTTCCCATTCTTCTTCGCTTCTGCTGGACCACCAGGGCTGTTTCTCTGCCAATATTCTTTTAACTGTGGGAAAGAAGAGCAGTAATCCTCATGAGAACTATCGGCCCCTACAGCCACATC-------------------------------------CTCCCTTATAGTTTTAACAAAATGCTCT-TATA--CACCATCTGATTTAATGAC-ACCAACAACTGTACAAGGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91235662 318 - 171882078 caatcttaacaattaccctctactgCTCCTTGGG------------C-CCCCTGTTCCCAGAAGCCTGGCCAGCCAAGACTCACATCTCCAGGTGAGTGGCAACCATCAGCAGTGGCTGTCTCAGGGCCACTGCCATTT---GTTTTCCTGTTCCTCTTTGCTCCTGCTGGAACTCCAGGGCTGTTTCTCTGCCAATATT-TTTTAACTGTGGGAAAGAAGAGCAGTAATACTCATGAGAACTATCAGCCCCTACAGCCACATC-------------------------------------CTCCTTTACAGTTTTTACAAAATACTCT-TATA--CACCAGCTGATTTAATGAC-ACCAACAACTGTACAAAGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      416944 318 -   9617498 caatcttaacaattaccctctactgCTCCTTGGG------------C-CCCCTGTTCCCAGAAGCCTGGCCAGCCAAGACTCACATCTCCAGGTGAGTGGCAACCATCAGCAGTGGCTATCTCAGGGCCACTGCCATTT---GTTTTCCTGTTCCTCTTTGCTCCAGCTGGAACTCCAGGGCTGTTTCTCTGCCAATATT-TTTTAACTGTGGGAGAGAAGAGCAGTAATACTCATGAGAACTATCAGCCCCTACAGCCACATC-------------------------------------CTCCTTTACAGTTTTTACAAAATACTCT-TATA--CACCAGCTGATTTAATGAC-ACCAACAACTGTACAAGGTG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4969540 318 +  14009840 caatcttaacaattaccctctactgCTCCTTGGG------------C-CCCCTGTTCCCAGGAGCCTGGCCAGCCAAGACTCACATATCCAGGTAAGTGGCAACCACCAGAAGTGGCTGTCTCAGGGCCACTGCCATTT---G-TTTCCTGTTCCTCTTTGCTCCTGCTGGAACTCCAGGGCTGTTTCTCTGCCAATATT-TTTTAACTGTGGGAGAGAAGAGCAGTAATACTCATGAGAACTATCAGCCCCTACAGCCACATC-------------------------------------CTCCTTTACAGTTTTTACAAAATACTCT-TATA--CACCATCTGATTTTATGATAACCAACAACTGTACAAGGTG
i cerAty1.NW_012001627v1    C 0 I 308
s chlSab2.chr26              7585440 319 +  58131712 caatctcaataattaccctccactgcccctcGGG------------C-CCCCTGTCCCCAGGAGACTGGCCAGCCAAGACTCACATCCCCAGGTGAGTGGCAACCACCAGAAGTGGTTGTCTCAGGGCTACTGCCAGTA---TTTTTCTTTTTTGTCTTCACTCCTGCAGGAACACCAGGGCTGTTCCTCTGCTGATATTCTTTTAGCTGTGGGAAAGAAGAGCAGTAATACTCATGAGAACTACCAGCCCCTACGGCCACATC-------------------------------------CTCCTTTACAGTTTTTGCAAAATACTCT-TATA--CACCATCTGATTTAATGCC-ACCAAGAACTGTACATGGTG
i chlSab2.chr26             I 15 C 0
s calJac3.chr10             72461038 330 - 132174527 GAATCTTAGCAATTACCCTCCACTGCCCCTTGGGCACCCCCTCTCCC-CCCCCATCCCCAGGAGCCTGGCTGGCCAAGACTCACATCCCCAGGTGACTGGCAACCACTATAGGCGGCTGACTCAGGGTTACTGGCATTT---GTGTTCAATTTTCTTTTCGCTCCTTCGAGAACACCAGATCTCTTCCTCATCTGATATTCTTTTAACTGTGGGAAAGAAGAGCAGTAATACTCATGAGAACCACCAGCCCCAACAGCCACATC-------------------------------------CCCCTTTACAGTTTTTACAATACACTCT-TATA--CACCATCAGATTTAATGCC-ACCAACAACTGTAC-AGGTG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1013290 316 -   1842816 caatcttaacagttcccctctactgccccttggg------------c-ccctttTCCCCAGAAGCCTGGCCAGCCAAGACTCACATGGCATGGTGACTGGCAACCATCAGAAGTGCCTGTCTCAGGGCTATTGTTGTTT---CTTTTCTTTCTCCGTCTCACTCGTGTTGGAACAGGAGGGCTGTTTCGTTGTTGAAATTCTGTTAACTGTGGGAAAAAAGAGCAGTAATACTCATGAGAACTGCAaacccctacagtca---c-------------------------------------ctacattacagtttttacaaaatgctgt-taca--caccatatgatttaatgtc-atcaacaactctataaggtG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9403062 322 +  14477005 CAATCATAAAAATTACCCTCTACTGCCCCTTGGG------------C-CCCCGGTCCCCAGGAACCTGGCCAGCCAAGACTCACATCCTCAGATGAGTGGCAATCACCAGAATTGGTTGTCTCAGGGCTACTGCCATTTTTAATTTTCTTCTTCTTTTTTGCTCCTGCAGGAACACCAGGGCTATTCCTCTGCTGATATTCTCTCAGCTGTGGAAAAGAAGAGCAGCAATACTCATGAGAACTACAAGCCCCTATAGTTACATC-------------------------------------CTACTTTACAATTTTTCCAAAATAGTCT-TATA--GACCATCTGATTTAATGCC-ACCAACAACTGTACAAGGTC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30967805 352 +  31380117 cAATCTTAACCAGTTCTCCTTACTTCTCCT-AAG------------C-CCCCTATCCCCAAGGGCCTGGCAAACCATGACTCACGTCCTCAGGTGAGTGGCAATCATCAGAAGTAGTTGACTCAGAGCTACCATCATTT---TTTACTTTCTTCTTCTTCTTTGTATAAGAAGATGGTAGATTGTGCTTCCGCTGAAATTCTAGCAACTGTGGAAAGGAAAAGCAGTAAGATTCATGAAAATTATAAGCCCATATGATTACATCATACTTCATGTGGGAGGGGTCTTTTTTGCTTTATTTTTTACTTTACAGTTTTTACAAAATATATTGTGTA--CAATGTCTGATTTAATGCC-ACCAACAACCAAATGA----
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5837441 317 -  61074082 CAGTATCAACCACCACCCTCTACTGCCCCTCAAA------------CACCCCTGGCCCCAGGAACCTGGCCAGCCAGTACTCACATCCTCAGGAGAGTGACAATCATTGGAAGTGGTAGTCTCAGGGCTACTGCCATTTTTAATCTTCCTTTTCTTCTTTGCTCCT------ACACCAGGGCTGTTCTTCTGCTGATACTCCCTCAACTACAGAAAGGAAAATCAGTGGGGCTCATGAGaactataaacccctgtattcatgtc-------------------------------------caactttgtagttt--acaatatactcc-catactcgccatctgacttaatgcc-accaacagccctacaaggtG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            415584 275 -    584178 cagtctaaaccagtaccctctactgCACCTTCAG------------CATCCCGATCCCAGGGAGGCTGACCAGCCAAGACTCACATCCTCAGGCGAGTGGC---CACCAGAAGTTGGTATCTCCGGGCTACTGCTATTTTTGATCTTTCTTTTCTTTTTGGCTCCTGCAGGAACACCAGGGCTGTTCCTCTGCTGAAATTCTCTTAACTGCAGAAAGGAAAAA----GACACTCATGAGAAGTCTAAGCCC------------C------------------------------------------------------------------TATA--CGCCATCTGATTTAATGCC-ACCACCAACCCTACAA-GTG
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M
e manLeu1.NW_012109919v1      121799 472 +   7069685 I

a score=198219.000000
s hg38.chr15_KI270851v1_alt   260498 49 +    263054 TTGTCACACTCATTT-----AGTGAC-T---GAGAAGGATTGATATCATGGCTAGAAA
s panTro5.chr15             72204415 49 -  83230942 TTGTCACAATCATTT-----AGTGAC-T---GAGAAGGATTGATATCATGGCTAGaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71441207 49 -  99763055 TTGTCACAATCATTT-----AGTGAC-T---GAGAAGGATTGATATCATGGCTAGAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       20492 49 -    281578 TTGTCACACTCATTT-----AGCGAC-T---GAGAAGGATTGCTATCATGGCTAGAAA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8437491 49 + 169600520 TTGTCACCATCATTT-----AGTGAC-T---GAGAGGGATTGATATAATGGCTAGGaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91235980 49 - 171882078 TTGTCACAATCAGTT-----AGTGAC-C---AAGAGGGATTGATATCATGGCCAGgaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      417262 49 -   9617498 TTGTCACAATCAGTT-----AGTGAC-C---AAGAAGGATTGATATCATGGCCAGgaa
i macNem1.NW_012017799v1    C 0 C 0
s chlSab2.chr26              7585759 49 +  58131712 TTGCCACAATCACTT-----AGTGAC-T---GAGAGGGATTGATATTATGGCTAAAAA
i chlSab2.chr26             C 0 I 31
s calJac3.chr10             72461368 38 - 132174527 TTGTCGCAATC---------AGTGAC-T---GAGAGGGACTGAT---ATGGCAA----
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1013606 49 -   1842816 TGGTCATAATCACTT-----AGTGAC-T---GAGAGGGATTGATATCATGGCAAAATT
i cebCap1.NW_016107745v1    C 0 I 25
s aotNan1.NW_018502759v1     9403384 44 +  14477005 TTATCACAATCACTT-----AGTGAC-T---GAGAGGGACTGATACCATGGCT-----
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30968157 49 +  31380117 TTGTAACAACCACTT-----AGTGAC-T---AAAATAGACTGTTAACATGGCTTTTTT
i otoGar3.GL873533          C 0 I 1
s canFam3.chr9               5837758 48 -  61074082 TTGTAATTCTC---------AGTGAC-TGCAGAAATAGACTGATAACATGACTAAGAA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            415859 49 -    584178 TTATAATTCTCATTTTTAAAAATGCCAT---GACATG------TAACATGGCTTTAAA
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M
e manLeu1.NW_012109919v1      121799 472 +   7069685 I
e cerAty1.NW_012001627v1     4969858 308 +  14009840 I

a score=8044.000000
s hg38.chr15_KI270851v1_alt   260547  5 +    263054 AAA-----AA
s panTro5.chr15             72204464 10 -  83230942 aaagaaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71441256  5 -  99763055 AAA-----AA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       20541  5 -    281578 AAA-----AA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8437540  5 + 169600520 aaa-----aa
i rheMac8.chr7              C 0 I 8
s macFas5.chr7              91236029  5 - 171882078 aga-----aa
i macFas5.chr7              C 0 I 528
s macNem1.NW_012017799v1      417311  5 -   9617498 aga-----aa
i macNem1.NW_012017799v1    C 0 I 181
s cebCap1.NW_016107745v1     1013680  2 -   1842816 --------aa
i cebCap1.NW_016107745v1    I 25 I 3
s otoGar3.GL873533          30968207  4 +  31380117 AAA-----A-
i otoGar3.GL873533          I 1 C 0
s canFam3.chr9               5837806  5 -  61074082 AAG-----AA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            415908  5 -    584178 AAA-----AA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9403428  0 +  14477005 C
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M
e manLeu1.NW_012109919v1      121799 472 +   7069685 I
e cerAty1.NW_012001627v1     4969858 308 +  14009840 I
e chlSab2.chr26              7585808 31 +  58131712 I
e calJac3.chr10             72461406  0 - 132174527 C

a score=104602.000000
s hg38.chr15_KI270851v1_alt   260552 27 +    263054 AAAGAAAA-----------------AGGCAATACTGGCACTTTG
s panTro5.chr15             72204474 27 -  83230942 aaagaaaa-----------------aGGCGATACTGGGACTTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71441261 26 -  99763055 AAAG-AAA-----------------AGGCGATACTGGGACTTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       20546 22 -    281578 -----AAA-----------------AGGCAATACTGGAACTTTG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8437553 27 + 169600520 aaagaaaa-----------------aGGTGATACTGGAACTTCG
i rheMac8.chr7              I 8 C 0
s macFas5.chr7              91236562 27 - 171882078 aaagaaaa-----------------agGTGATAGTGGAACTTTG
i macFas5.chr7              I 528 C 0
s macNem1.NW_012017799v1      417497 27 -   9617498 AAAGAAAA-----------------AGGTGATAGTGGAACTTTG
i macNem1.NW_012017799v1    I 181 C 0
s cerAty1.NW_012001627v1     4970166 27 +  14009840 aaagaaaa-----------------agGTGATAGTGGAACTTTG
i cerAty1.NW_012001627v1    I 308 C 0
s manLeu1.NW_012109919v1      122271 27 +   7069685 aaagaaaA-----------------AGGTGATAGTGGAACTTTG
i manLeu1.NW_012109919v1    I 472 C 0
s calJac3.chr10             72461406 24 - 132174527 -AAAAAGA-----------------AGGCAATACTGGAACTT--
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1013685 25 -   1842816 gaaagaaa-----------------aagcaaTACTAGACCTT--
i cebCap1.NW_016107745v1    I 3 C 0
s aotNan1.NW_018502759v1     9403428 24 +  14477005 -TAAAAAA-----------------AGGCAATAATTGAACTT--
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30968211 17 +  31380117 -------------------------AGGCAATAATGCAATTT--
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5837811 41 -  61074082 -AAGGCAATAATGGAATTTAAACTTAGGCAATAATGGAATTT--
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            415913 19 -    584178 -AAAAAAA-----------------AGGCAATAATGG-------
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M
e chlSab2.chr26              7585808 31 +  58131712 I

a score=922386.000000
s hg38.chr15_KI270851v1_alt   260579 130 +    263054 AAACTCAGTCTTCTGACTCCAAGCTCTGAGGTTTTGCCAAG-AATCAGCAGCTGCCAGGGACCAAAACCAGAGGCAGAGGTAG-AAAAGTAAACATTAAGTAGGCAGGAACTGTATGCCATGTGGTTTAGAG
s panTro5.chr15             72204501 130 -  83230942 AAACTCAGTCTTCTGACTCCAAGCTCTGGAGTTTTGCCAAG-AATCAGCAGCTGCCAGGGACCAAAACCAGAGGCAGAGGTAG-AAAAGTAAACATTAAGTAGGCAGGAACTGTATGCCATGTGGTTTAGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71441287 130 -  99763055 AAACTCAGTCTTCTGACTCCAAGCTCTGGAGTTTTGCCAAG-AATCAGCAGCTGCCAGGGACCAAAACCAGAGGCAGAGATAG-AAAAGTAAACATTAAGTAGGCAGGAACTGTATGCCATGTGGTTTAGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       20568 128 -    281578 AAACTCAGTCTTCTGACTCCAAGCTCTGAGGTTTTGCCAAG-AATCAGCAGCTGCCGGGGACCAAAACCAGAGGCAGAGGTAG-AAAAGTAAACATTAAGTAGGCAGGAACTGTATGCCCTGTGGTTT--AG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8437580 123 + 169600520 AAACTCAGTCTTCTGACTCCAAGCTCTGGGGTTTTGCCAAG-AATCAGCAGCTGCCAGGGACCAAAACCAGAGGTAGAGGTAG-AAAAGTAAACATTAGGTAGGCAGGCACT-------GCATGGTTTAGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91236589 130 - 171882078 AAACTCAGTCTTCTGACTCCAAGCTCTGGGGTTTTGCCGAG-AATCAGTAGCTGCCAGGGACCAAAACCAGAAGCAGAGGTAA-AAAAGTAAACATTAAGTAGGCAGGAACTGTATGCCGCATGGTTTAGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      417524 130 -   9617498 AAACTCAGTCTTCTGACTCCAAGCTCTGGGGTTTTGCCAAG-AATCAGTAGCTGCCAGGGACCAAAACCAGAAGCAGAGGTAA-AAAAGTAAACATTAAGTAGGCAGGAACTGTATGCCGCATGGTTTAGAG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4970193 123 +  14009840 AAACTCAGTCTTCTGA-------CTCTGGGGTTTTGCCAAG-AATCAGTGGCTGCGAGGGACCAAAACCAGAGGCAGAGGTAG-AAAAGTAAACATTAAGTAGGCAGGAACTCTATGCCGTGTAGTTTAGAG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7585839 130 +  58131712 AAACTCAGTCTTCTGACTCCAAGCTCTGGGATTTTACCATG-AATCAGCAGCTGCCAGGGACCAAAACCAGAGGCAGTGGTAG-AAAAGTCAACATTAAGTAGGCAGGAACTGTACGCTGTGCGGTTTGGAG
i chlSab2.chr26             I 31 C 0
s manLeu1.NW_012109919v1      122298 123 +   7069685 AAACTCAGTCTTCTGA-------CTCTGGGGTTTTGCCAAG-AATCAGTGGCTGCGAGGGACCAAAACCAGAGGCAGAGGTAG-AAAAGTAAACATTAAGTAGGCAGGAACTCTATGCCGTGTAGTTTAGAG
i manLeu1.NW_012109919v1    C 0 C 0
s calJac3.chr10             72461430 128 - 132174527 AAACTCAT---TCTGACTCCAAGCTCTGGGATTTTTCCATG-AATCAGCAGCTTCCAGGGACCAAAACCAGAGGCAGAGGTAGAAAAAGTCAACATTAAGTAGGCAGGACCTGTACACTGTATGTTTCACAG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1013710 130 -   1842816 AAACTCATTCCTCTCACTCCAAGCTCTGGGGTTTTGCCATG-AATCAGCAACTGCCAGAGACCAGAACCACAGGCAGAGGCAG-GAAAGTCAACATGAAGTAGACAGGAACTGTACACTGTGTGGCTTAGAG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9403452 130 +  14477005 AAACTCAGTCTTCTGACCCAGAGCTCGGGGGTTTTGCCACA-AATCAGCAGCTACCAGGGGCCAAATCCAGAGGCAGAGGTAG-AAAAGCAAAAATTAAGTAGGCAGGAACTATGCACTGTGTGGTTTAGAA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30968228 111 +  31380117 AAATTCAGTCTTCCAACTCTAAGCTCTGGGGTTTAGCCATG-AATCTGCAGT----GTGGGGCAAAAC----------------CAAAGGAAGCATCTAGTAGGCAGGAGCTGTGCATTGTGTGGCTCAGAG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5837852 125 -  61074082 AAACTTAGTCTTCTGACTCTGAGTTCTGGGGTTATGCCATGAAATCAGCAGGTGCCAAAAGGCAAAACCAGAGGTGGAGGTGG-AAAAG-----GTGGGAAAAATAACATCTGAGTAATCTG-ACTTTAGAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            415932 127 -    584178 -AATTTAAACTTCTAACTCCAGGCTCTGGAATTCTGCTATA-AATCAGTCACTGTCAGGGG-CAAAACAAGAGATATACATAA-AAAAGT-AACGTTAACTGGTAAAGACCAATACATCGTGAGATTTAGAA
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M

a score=704541.000000
s hg38.chr15_KI270851v1_alt   260709 111 +    263054 TCATACA----------TCCTCACACGTCTGTTAGTGTGAAGAAGTGCACCAGTACCTCTCAAAC-TTTTATATCAATGTGTCCTCACGGCAGAAGG-------CAG--------C-CTTTCTCT--TAAATC--AGAATTC
s panTro5.chr15             72204631 111 -  83230942 TCACACA----------TCCTCACACGTCTGTTAGTGTGAAGAAGTGCACCAGTACCTCTCAAAC-TTTTATATCAATGTGTCCTCATGGCAGAAGG-------CAG--------C-CTTTCTGT--GAAATC--AGAATTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71441417 112 -  99763055 TCACACA----------TCCTCACACGTCTGTTAGTGTGAAGAAGTGCACCAGTACCTCTCAAACTTTTTATATCAATGTGTCCTCATGGCAGAAGG-------CAG--------C-CTTTCTGT--GAAATC--AGAATTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       20696 111 -    281578 TCGTGCA----------TCCTCACACGTCTGTTAGTGTGAAGAAGTGCACCAGTACCTCTCAAAC-TTTTCTATCAATGTGTCCTCATGGCAGAAGG-------CAG--------C-CTTTCTCT--TAAATC--AGAATTC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8437703 113 + 169600520 TCATACA----------TCCTCACACATCTGTTAGTATCAAGAAGTGCACCAGTACCTCTCAAAC-TTTTATATCAATGTGTCCTCATGGCAGAAGG-------CAG--------C-CTTTCTGT--TAAATCTGGGAATTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91236719 113 - 171882078 TCATACA----------TCCTCACTTGTCTATTAGTGTGAAGCAGTGCACCAGTACCTCTCAAAC-TTCTATATCAATGTGTCCTCATGGCAGAAGG-------AAG--------C-CTTTCTGT--TAAATCTGGGAATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      417654 113 -   9617498 TCATACA----------TCCTCACTTGTCTATTAGTGTGAAGCAGTGCACCAGTACCTCTCAAAC-TTCTATATCAATGTGTCCTCATGGCAGAAGG-------AAG--------C-CTTTCTGT--TAAATCTGAGAATTT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4970316 113 +  14009840 TCATACA----------TCCTCACACGTCTGTTAGTGTGAAGAAGTGTGACAGTACTTCTCAAAC-TTTTATATCAATGTGTCCTCATGACAGAAGG-------AAG--------C-CTTTCTGT--TAAATCTGGGAATTT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7585969 114 +  58131712 TCATACA----------TCCTCACACGTCTGTAAGTGTGAAGAAGTGCACCGGGACCTCTCAAAC-TTTTATATCAATGTGTCCTCATGGCAGAAGG-------CAG--------CTTTTTTTGT--TAAATCTGGGAATTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      122421 113 +   7069685 TCATACA----------TCCTCACACGTCTGTTAGTGTGAAGAAGTGTGACAGTACTTCTCAAAC-TTTTATATCAATGTGTCCTCATGGCAGAAGG-------AAG--------C-CTTTCTGT--TAAATCTGGGAATTT
i manLeu1.NW_012109919v1    C 0 C 0
s calJac3.chr10             72461558 113 - 132174527 TCATGCA----------TCTTCACACATCTGTTGGTGTGAAGAAGTGCGCCAGTACTGCTCACAC-TTTTATATCGATCTGTCGTCATGGCAGAAGG-------CAG--------C-ATTTCTGT--TGAATCCGGGTATTT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1013840 113 -   1842816 TCGTACA----------GCCTCGCACATCTGTTAGTGTTAAGAAGAGCACCAGCACCTCTCACAC-TTTTATACCAATGTGTCCTCAAGGCAGAAGG-------CAG--------C-CTTTCTGT--TAAATCTGGGGATTC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9403582 112 +  14477005 TCATACA----------TCCTCACACGTTTGTTAGTGT-AAGAAATGCACGAATACCTCTCAAAC-TTTTACATCAAAGTATCCTCATGGCAGAAGG-------CAG--------G-CTTTCTGT--TAAATCTAAGAATTT
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30968339 127 +  31380117 TCAGGCAGTGGGGCCCTTCCTTAAACATCTGTGAG-----AGCTGCACACCAGTACGTCTTAAAA-ATGTAAGTCAATGTGCCCTAATGGCAGGAGGGTAGTGAAAG--------T-ATATCCCTAGTGAACTTAGGAAACT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5837977 113 -  61074082 TC---CT----------TTCCTACAAATCTGTTA-----AAGCTGCACATTGGTATTTATCAAAC-TTTTATATCAACGTATCCTGATGGCAGAAGG-------CAGTAAAGGCAC-ACACCTAG--TGAATGTGGAAACCT
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958            416059   0 -    584178 C
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M

a score=4578033.000000
s hg38.chr15_KI270851v1_alt   260820 625 +    263054 ATCAGAAAGAGGACAA-------CCCAAGCCTCATTTCAGAGAGAGGGCTGGTATACTCTTAGAAACCTATGTGACTGTCATCCCTAAGTATATTCATGT-------TTTTT-CTCTTGATCTCAAGAGAAtcaagggaaactgatgcttcagaaagatgtcccacatttatcctgtggcACTCA-AAGTACCCAAGGTTGAGA---TAATA---TGAGGAAGATTC-AAGGTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATGTCACTTCAGAGACCACTGACTGA--------------AGGAGAGTCTGGTCCCAGAACCATGGAGAATTAGAATATGAGGTGGAGAACTCAG-AAAAAAAATGTTAAAATCTCTCTGGAAAGTAGAAGCCTGGGAG-AAAACCAAACC-----AAACCCA-----TTCT-CTCATTGCCACCCAGAGATACTGTCAATGTTTTGAGTTC-ATGGGGGAAGTGTAGGCTTTTCCCACCGTCAACATCTGT-------------AAGG----------GAGTGAGGCAGCCTGGAACCTCTTGCTCCTAGGTCCC----------ATAGTCTCCATTCCCCTTCCAGCTGGAAATTTGTCCTGTGACCAGAGGAACCAGAAACGGGGTGAGAACGCTTAGGGGACTGGGTCATAAGATCAAAGGCCAG----TCT
s panTro5.chr15             72204742 624 -  83230942 ATCAGAAAGAGGACAA-------CCCAAGCCTCATTTCAGAGAGAGGTCTGGTATACTCTTAGAAACCTATGTGACTGTCATCCCTAAGTACATTCATGT-------TTTTT-CTCTTGATCTCAAGAGAAtcaagggaaactgatgcttcagaaagatgccccacatttatcctgtggcACTCA-AAGTACCCAAGCTTGAGA---TAATA---TGAGGAAGATTC-AAGGTGTCAAGTTCAGTTTCCCAAGATCTATTTCACAGAAGATGAGCAAATGTCACTTCAGAGACCACTGACTGA--------------AGGAGAGTCTGGTCCCAGAACCATGGAGAATTAGAATATGAGGTGGAGAACTCAG-AAAAAAA-TGTTAAAATCTCTCTGGAAAGTAGAAGCCTGGGAG-AAAACCAAATC-----AAACCCA-----TTCT-CTCATTGCCACCCAGAGATACTGTCAATGTTTTGAGTTC-ATGGGGGAAGTGTAGGCTTTTCCCACCGTCAACATCTGT-------------AAGG----------GAGTGAGGCAGCCTGGAACCTCTTGCTCCTAGGTCCC----------ATAGTCTCCATTCCCCTTCCAGCTGGAAATTTGTGCTGTGACCAGAGGAACCAGAAACGGGGTGAGAACGCTTAGGGGACTGGGTCATAAGATCAAAGGCCAG----TCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71441529 622 -  99763055 ATCAGAAAGAGGACAA-------CCCAAGCCTCATTTCAGAGAGAGGTCTGGTATACTCTTAGAAACCTATGTGACTGTCATCCCTAAGTACATTCATG--------TTTTT-CTCTTGATCTCAAGAGAAtcaagggaaactgatgcttcagaaagatgccccacatttatcctgtggcACTCA-AAGTACCCAAGCTTGAGA---TAATA---TGAGGAAGATTC-AAGGTGTCAAGTTCAGTTTCCCAAGATCTATTTCACAGAAGATGAGCAAATGTCACTTCAGAGACCACTGACTGA--------------AGGAGAGTCTGGTCCCAGAACCATGGAGAATTAGAATATGAGGTGGAGAACTCAG-AAAAAAA-TGTT-AAATCTCTCTGGAAAGTAGAAGCCTGGGAG-AAAACCAAATC-----AAACCCA-----TTCT-CTCATTGCCACCCAGAGATACTGTCGATGTTTTGAGTTC-ATGGGGGAAGTGTAGGCTTTTCCCACCGTCAACATCTGT-------------AAGG----------GAGTGAGGCAGCCTGGAACCTCTTGCTCCTAGGTCCC----------ATAGTCTCCATTCCCCTTCCAGCTGGAAATTTGTGCTGTGACCAGAGGAACCAGAAACGGGGTGAGAACGCTTAGGGGACTGGGTCGTAAGATCAAAGGCCAG----TCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       20807 624 -    281578 ATCAGAAAGAGGACAA-------CCCAAGCCTCATTTCAGAGAGAGGTCTGGTATACTCTTAGAAACCTATGTGACTGTCATCCCTAAGTACATTCATGT-------TTTTT-CTCTTGATCTCAAGAGAAtcaagggaaactgatgcttcagaaagatgtcccacatttatcctgtggcACTCC-AAGTACCCAAGGTTGAGA---TAATA---TGAGGAAGATTC-AAGGTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATGTCACTTCAGAGACCACTGACTGA--------------AGGAGAGTCTGGTCCCAGAACCATGGAGAATTAGAATATGAGGTGGAGAACTCAG-AAAAAAA-TGTTAAAATCTCTCTGGAAAGTAGAAGCCTGGGAG-AAAACCAAATC-----AAACCCA-----TTCT-CTCATTGCCACCCAGAGATACTGTCAATGTTTTGAGTTC-ATGGGGGAAGTGTAGGCTTTTCCCACCGTCAACATCTGT-------------AAGG----------GAGTGAGGCAGCCTGGAACCTCTTGCTCCTAGGTCCC----------ATAGTCTCCATTCCCCTTCCAGCTGGAAATTTGTGCTGTGACCAGAGGAACCAGAAACGGGGTGAGAACGCTTAGGGGACTGGGTCGTAAGGTCAAAGGCCAG----TCT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8437816 628 + 169600520 ATCAGAAAGAGGACAA-------CCCAAGCCTCATTTCAGAGAGAAGTCTGGTATACTCTCAGAAGCCTATGTGACTGTCATCCCTAAGTACATTAATGT-------TTTTT-CTCCTGATCTCAAGAGAAtcaagggaacctgatgcttcagaaagatgtctcacatttatcccgtggcACTCA-AAGTTCCCCAGGTCAAGA---TAATA---TGAGGAAGATTC-AAGCTGTCAAGTTCAGTTCCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAGAGACCACTGACTGA--------------AGGGCAGTCTGGTCCCAGAACCATGGAGAATTAGAATATGAGGTGGAGAACTCAGAAAAAAAA-TGTTAAAATCTCTCTGGAAAGTAGAAGCCTGGGAG-AAAACCAAACC-----AAACCCA-----TTCT-CCCATTGCCACCTAGAGATACTGTCAACGTTTTGAGCTC-ACGGGGGAAGTGTAGGCTTTTCCCCCTGTCAATGTCTATGT----------TAAGG----------GAGTGAGGCAGCCTGAAACTGCTTGCTCCTAGATCCC----------ATAGTCTCCATTCCCCTTCCAGCTGCAAATTTGTGCTGTGACCAGAGGAACAAGAAATGGGGTGACAACACTTAGGGGACTGGGTCATAAGATCAAAGGCCGG----TCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91236832 628 - 171882078 ATCAGAAAGAAGGCAA-------CCCAAACCTCATTTCAGAGAGAAGTCTGGTATACTCTTAGAAACCTATGTGACTGTCATCCCTAAGTACAGTAATGT-------TTTTT-CTCTTGATCTCAGGAGAATCAACAGaaactgatgcttcagaaagatgtcccacatttatcctgtggcACTCA-AAGTACCCCAGGTTCAGA---TAATA---TGAGGAAGATTC-AAGCTGTCAAGTTCAGTTTCCCAAGATCTATCCCACAGAAGATGAGCAAATCTCACTTCAGAGACCAGTGAATGA--------------AGGGCAGTCTGGTCCCAGAACCATGGAGAATTAGAATATGAGGTGGAGAACTCAG-AAAAAAA-TGTTAAAATCTCTCTGGAAAGTAGAAGCCTGGGAGAAAAACCAAACC-----AAACCCA-----TTCC-CCCATTGCCACCCAGAGATAATGTCCATATTTTGAGCTC-ACCGGGAAAGTGCAGGCTTTTCCCACTGTCAATGTCTATGT----------GAAGG----------GAGTAAGGCAGCCTGAAACCTCTTGCTCCTAGGTCCC----------ATAGTCTCCATTCCCCTTCCAGTTGGAAATTTGTGCTGTGACCAGAGGAACCAGAAATGGAGCGAGAATGTTTACGGGACTGTGTTGTAAGATCAGTGGCTGG----TCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      417767 628 -   9617498 ATCAGAAAGAAGGCAA-------CCCAAACCTCATTTCAGAGAGAAGTCTGGTATACTCTTAGAAACCTATGTGACTGTCATCCCTAAGTACAGTAATGT-------TTTTT-CTCTTGATCTCAGGAGAATCAACAGaaactgatgcttcagaaagatgtcccacatttatcctgtggcactca-aagtgccccAGGTTGAGA---TGATA---GGAGGAAGATTC-AAGGTGTCAAGTTCAGTTTCCGAAGATCTATTCCACAGAGGATGAGCAAATCTCACTTCAGAGACCAGTGAATGA--------------AGGGCAGTCTGGTCCCAGAACCATGGAGAATTAGAATATGAGGTGGAGAACTCAG-AAAAAAA-TGTTAAAATCTCTCTGGAAAGTAGAAGCCTGGGAGAAAAACCAAACC-----AAACCCA-----TTCC-CCCATTGCCACCCAGAGATAATGTCCATATTTTGAGCTC-ACCGGGAAAGTGCAGGCTTTTCCCACTGTCGATGTCTATGT----------GAAGG----------GAGTAAGGCAGCCTGAAACCTCTTGCTCCTAGGTCCC----------ATAGTCTCCATTCCCCTTCCAGTTGGAAATTTGTGCTGTGACCAGAGGAACCAGAAATGGAGCGAGAATGTTTACGGGACTGTGTTGTAAGATCAGTGGCTGG----TCT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4970429 628 +  14009840 ATCAGAAAGAAGACAA-------CCCAAGCCTCATTTCAGAGAGAAGTCTGGTATACTGTTAGAAACCTATGTGACTGTCATCCATAAATACCTTAATGT-------TTTTT-CTCTTGATCTCAGGAGAATCAACAGaaactgatgcttcagaaagatgtcccacatttatcctgtggcACTCA-AAGTACCCCAGGTTCAGA---TAATA---TGAGGAAGATTC-AAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAGAGACCACTGAATGA--------------AGGGCAGTCTGGTCCCAGAACCATGGAGAATCAGAATATGAGGTGGGGAACTCAGAAAAAAAG-TGTTGAAATCTCTCTGGAAAGTAGAAGCCTGGGAG-AAAACCAAACC-----AAACACA-----TTCC-CCCATTGCCACCCAGAGATAATGTCAATATTTTGAGCTC-ACGGGGGAAGTGTAGGCTTTCCCCACTGTCAATGTCTATAT----------GAAGG----------CAGTAAGGCAGCCTGAAACCTCTTGCTCCTAGGTCCC----------ATAGTCTCCATTCCCCTTCCAGCTGGAAATTTGTGCTGTGACCAGAGGAACCAGAAATGGGGTGACAGTGCTTAGGGGACTGTGTCATAAGATCAGTGGCTGG----TCT
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7586083 622 +  58131712 ATCAGAAAGAGGACAA--------CCAAGTCTCATTTCAGAGAGAAGTCTGGTATACTCTTAGAAACGTATGTGACTGTCATCCCTAAGTACATtaatgt-------ttttc-ctc----tctcaagagaatcaagggaaactggtgctttagaaagatctcccacatttatcctgtggcactca-aagtgccccAGGTTGAGA---TGATA---TGAGGAAGATTC-AAGGTGTCAAGTTCAGTTTCCGAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAGAGACCAGTGATTGA--------------AGCTCTCTCTGGTCCCAGAACCGTGGAGAATTAGAATGTGAGGTGGAGAACTCAG-AAAAAAA-TGTTAAATTCTCTTTGGAGAGTAGAAGGCTGGGAG-AAAACCAAACC-----AAATTCG-----TTCT-CCCATTGCCACCCAGAGATACTGTCAACATTTTGAGCTC-ACGGGTGAAGTGTAGGCTTTTCACACTGCCAATGTCTATGT----------GAAGG----------GAGTAAGGCAGCCTGAAACCTCTTTCCCCTAGGTCCC----------ATAGTCCCCATTCCCCTTCCAGCTGGAAATTTGTGCTGTGACCCAAGGAACCAGAAATGGGGTGAGAATGCTTAGGGCACAGGGTCGTAAGATCAATGGCCGG----TCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      122534 628 +   7069685 ATCAGAAAGAAGACAA-------CCCAAGCCTCATTTCAGAGAGAAGTCTGGTATACTGTTAGAAACCTATGTGACTGTCATCCCTAAATACCTTAATGT-------TTTTT-CTCTTGATTTCAGGAGAATCAACAGaaactgatgcttcagaaagatgtcccacatttatcctgtggcACTCA-AAGTACCCCAGGTTCAGA---TAATA---TGAGGAAGATTC-AAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAGAGACCACTGAATGA--------------AGGGCAGTCTGGTCCCAGAACCATGGAGAATCAGAATATGAGGTGGAGAACTCAG-AAAAAAAGTGTTGAAATCTCTCTGGAAAGTAGAAGCCTGGGAG-AAAACCAAACC-----AAACACA-----TTCC-CCCTTTGCCACCCAGAGATAATGTCAATATTTTGAGCTC-ACGGGGGAAGTGTAGGCTTTCCCCACTGTCAATGTCTATAT----------GAAGG----------GAGTAAGGCAGCCTGAAACCTCTTGCTCCTAGGTCCC----------ATAGTCTCCATTCCCCTTCCAGCTGGAAATTTGTGCTGTGACCAGAGGAACCAGAAATGGGGTGACAGTGCTTAGGGGACTGTGTCATAAGATCAGTGGCTGG----TCT
i manLeu1.NW_012109919v1    C 0 C 0
s calJac3.chr10             72461671 595 - 132174527 ATCAGCAAGATGACAG-------CCCAAGCCTCATTTCAGAGAGA-----------------------------ACTGTCCTCCCTAAATACATTATTTT-------TTTTTCCTT----TCTCAAGAGACtcaagggaaactgatacttcagaaagatatcccataattttcctgtggcACTCAGAAGTACCCCAGGTTGAGA---TGATA---TGAGGGAGATTC-AAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCAATAGACGATGAGGAGATCTCATTCCAGAGACCACTGACTGA--------------AGGGCAGT-TAGTCCCAGAACTATGGAGAATTTGAATATGAGGTGGATAACTCAG-AAAAAAA-TGTTAAAGTCTCTCTGGAGAGCAGAAGCCTGGAAG-AAAACCAAGCC-----AAACCCA-----TTCT-TCCATTGCCACCCAGAGATACTGTTAACATTTTGAGCTC-ACAGGGGAAGTGTAGGCTTCTCACACTGTCAATGTCTGTGT----------TAAGG----------GAGTGAGGCAGCCTGAAAGCTCTTGCTCTTAGGTCCC----------ATAGTCTCCATTCCCCTGCCTGCTGGAAATGTGTTCTGTGACCAGAGGAACCAGAAATGGGATGAGAACGCTTAGGGGACTGGGTCATAAGATCAAAGTCAGG----TCT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1013953 631 -   1842816 ATCAGAAAGAGGACAA-------CCCAAGTCTCATTTCAGAGAGAAGTCTGATATACCCTTAGAAATCGATGTGACTGTCATCCCTAAGTACATtaatgt-------ttttg-ctg----tttcaagatactcaagggaaactgatgcctctgaaagatgtcccatgtttatcccatggcATTCA-AAGTAGCCTAAGTTGAGA---TGATA---TGAGGAAGATTC-AAGCTGTCAGTTTCAATTTCCCAAGATCTGTTCCACAGAAGATGAGCAGATCTCACTCCAGAGGCCACTGACTGA--------------AGGGCAG--TGGTCCCAGAACCATGGAGAATTTGAAGATGAGGTGGAGAACTAAG-AAAGAAA-CGTGAAAGTCTCTCTGGAGAGCAGAAGCCTGAGAG-AAAACCAAACC-----AAACCCA-----TTCT-CCCATTGCCACCCAGAGACACTGTCAACATTTTGAGCTC-ACGAGGGAAGTGTAGGCTTTTCACACTATCAATGTCTATGT----------TAAGG----------GAGTGAGGCAGCCTGAAACCTCTTGCTCCTAGGTCCCTCTTGCTCCTAGGTCCCCCATTCCCCTTCCAGTTGGAAATTTGTGCTGGGACCAGAAGAGCCAGAAATGGGATGAAAATGCTTAGAGGACTGGGTCCTAAGATTGAAGGCTGG----TCT
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9403694 619 +  14477005 AACAGAAAGAGGACAA-------TCCAAGTCTCATTTCAGAAAGAAGTCTGGTGTATTCTCACACATTTATGTGACTGTTATCCCTAAGTACATtaatgt-------tttt--ctc----tctcaagagaatcaagggaaactgatgcttcagaaagatg---catatttatcc-atggcACTCC-AAGTACCCCAGGTTGAGA---TGATA---TGAGAAAGACTG-AAGCTGTCAAGTTCAGTTTCCCAAGACCTGTTCCACAGAAGACAAGCAGATCTCATTCCAAAGACCACTGATTAA--------------AGGGCACTCTGGTCCCAGAACCATGGAGAATTCGAATATGAGGTGGAGAAGTCAGAAAAAAAA-CGTTAAAGTCTCTCTGGAGAGTAGAAGCCTGGGAG-AAAACCAAACC-----CAACCCA-----TTCT-CACATTGCCACCCAGAGATACTGCCAACGTTTTGAACTC-ACAGGGGAAGCGCAGGCTTTTCACACTGTCAACGTCTATGT----------TAAGG----------GAGTAAGGCAGCCTGAAGCCTCTCCCTCCTAGGTCCC----------ATAGTCCCCATTCCCCTTCCAGCTGGAAATTTATGCTGTGACCAGAGGAACCAGAAACGGGATGAGAACACTTATGGGGCTGGGTCCTAAGATCAAAGGCTGG----TCT
i aotNan1.NW_018502759v1    C 0 I 72
s otoGar3.GL873533          30968466 595 +  31380117 AACAGAAAAAGGACAAGGGACAAGCCAAGCATCATTTCAGAGAAAGGTCTATTGTAATCTTACAAGTATATGCAAATGTCATCCCTAAGTATATTCATGT-------TTTTTTCTC----TCTCCAGAGAATCAAGCAAAACTGAATCTTTGGAAAGCTCTCCCATAGTAATCCTGTGGCACTCA-GAGAACCTCATGTTGAGAAGGTAATG---TGGGGAAGATTCAAAGCGGTGAAGTTCAGTTTCCCAGGATCTGTTCTACAGAAGAGAAGTAGACCTCATTCCACAGAGCACTAAGT-------------------------------------------------GAATATGAGGTAGAGAACTCAG-TAAAAAA-TTTT--AGTCTCTCTGGAGCGTAGAAACCTGGGAG-AAAAGCAAACC-----CAACCCG-----TTCT-CCCATTGCAACCCAGAGATACTGTCAAGGTTTCCAGCTCTACTGGTGAAGTGTAGGCTTT-CGCACTGCCAATATTTAAGT----------TAAGG----------GAATAAGG-AGCCTGAAACCTCTCGGTCTTAAATTCC----------ATAGTTCTTAGTCCCCTTCCAATTAGAAATCTGTGCCTTGACCAGAGAAACCAGAAATGGAATG--AACACTCGGGGTATTGGGTCTTAAGATCAAAGGCCAG----GCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5838090 638 -  61074082 AACAGAAAGAGGACAA-------TCCAAGCACCATTTCAGAGAGAAGTCTATCATAATCTTACAAATCTACACAAATGTCATCCCT-AGTACATTACTATAAAAGGATTTTT-CTT----TCTCAAAAGAATCAAGCACAATTGATGCTTCAG-------TTCTATA-TTATCCTGTGGCCCTCA-GAACACTCCATGTTGAGA---TGATGATTTGGGGAAGATTCCCACCTATGAAATTCAGGTTCCAGAGATCAGTTCCACAGAGGATAAGCAGATCTCACTCCAAAGAGCACTGATTGATGGGGGGGAGGCGGGGGGGACTCTGGT-CCAGAATCATAAGGAATTAAAATGTGAGGTAGAGAATTCAGATTTAATA-TGTGAAAGTCTTTCTGGACAGTAGAAACCTAAAAG-GAAACCATACCAAAGAAAACACA-----CTCTCCCCATTGTCACC--AAGGTGTTACCAATGTTCCATGATC-ACTGGTGTAGT------------------CAATGTTTAAGG----------ATGGGGTACAGTCTAGAGTAAGGGCTCCTGAAACCTCTCCCACCTAGGTCCC----------ATAGTCCCCAGTCCCCTTCAAGCTGGAAATTTGCGCCGCGACCGGAGAAACCGGAAAGGGTATGAAAACACT-GGGAGACTGGGTAGTAAGACCAAACACCGGGGCTCCT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            416059 497 -    584178 ATCAGAT----------------ACCAGGACTCTTT-----------------------------------------------CTTAAATA--------T-------CTGTA-CTTTATATCCCAAG------------------------------------CACTCT-------------TCG-GAGTACCCTAGG---------TGAAA------------TTC-A----------TTCAGTTTCCCAGGATCTCTTCCACA---GATTAGCAAATCTCACTTTAAAGAGCACTGATTGA--------------GGGGAGTTCTGGTCCCAGAATCACAGGGAATTAGAACGTGAGGCAGAGAACTTA--AAAAATT-TTTGAAAGTCTCTCTGGAGAGTAGAAACCTGGGAG-AAAACCAAAGC-----AAACAAATAGGCTCTC-CCCACTGTCACCCAGTGATGTTGTAAACGTTTCAAGATC-ACGGGTGAAATTTGGGCTTTTCAACCTGTCAATGTCTGAGGATGCAGTACAGACCA----------GCATATGGAAGTTGGAAACCTCT-GGGCCTATGCCCC----------ATAGTCCAGAGGCCCCTTCAGGCTGAAAACCTGCGGGACGACCACAGAAACCGGAAG-GGGATGAACACACA-AGGGGTCTGGGTCGGAAGATCAAAGGCTGG----TCC
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M

a score=324133.000000
s hg38.chr15_KI270851v1_alt   261445 74 +    263054 T----GCAGTAACGGCAGTTACTAGGTGGGCTGTGACATCACAACATTCCAATCCTCCTGGTCAGGGGG-AGGGACCGT
s panTro5.chr15             72205366 75 -  83230942 T----GCAGTAACGGCAGTTACTAGGTGGGCTGTGACATCACAACATTCCACTCCTCCTGGTCGGGGGGGAGGGACCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71442151 74 -  99763055 T----GCAGTAACGGCAGTTACTAGGTGGACTGTGACATCACAACATTCCACTCCTCCTGGTCGGGGGG-AGGGACCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       21431 74 -    281578 T----GCAGTAACGGCAGTTACTAGGTGGGCTGTGACATCACAACATTCCACTCCTCCTGGTCGGGGGG-AGGGACCAT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8438444 73 + 169600520 T----CCAGTAATGACAGTTAGTAGGCGGATTGTGACATCACTACATTCCACTCCTCCTGGTTGGGGGT-GGGGG-CAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91237460 74 - 171882078 T----GCAGTAATGACAGTTCCTAGGCAGACTGCGACATCACTACATTCCACTCCTCCTGGTCGGGGGG-AGGGACCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      418395 74 -   9617498 T----GCAGTAATGACAGTTCCTAGGCAGACTGCGACATCACTACATTCCACTCCTCCTGGTCGGGGGG-AGGGACCAC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4971057 74 +  14009840 T----GCAGTAATGACAGTTCCTAGGCAGACTGTGACATCACTACATTCCACTCCTCCTGGTCGGGGGA-AGGGACCAC
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7586705 76 +  58131712 TG-CAGCAGTAATGACAGTTCATAGGGGGACTGTGACATCACTACATTCCACTCCTCCTGGG-GGTGGG-GGAAACCAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      123162 74 +   7069685 T----GCAGTAATGACAGTTCCTAGGCAGACTGTGACATCACTACATTCCACTCCTCCAGGTCGGGGGG-AGGGACCAC
i manLeu1.NW_012109919v1    C 0 C 0
s calJac3.chr10             72462266 70 - 132174527 -TGCAACAGTAATGACAGTTCGTAGAGGGACGGTGACATCACTACATTCTACT---CCT----GGGGGA-GGGGACCAC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1014584 73 -   1842816 -TGTAGCAGTAATGACGGTTCCTAGGGAGACCATGACATCTCTACATTCCACTCCCCCT----GGGGGA-GGGGACCAC
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30969061 62 +  31380117 -CTCGACAGTAATGACAGCTCCGAGGGGGACTGCGAGGTAACTACACTGCACTCCACCCTACC----------------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5838728 60 -  61074082 ----GGCGCTAATGACAGTTCCGAGGGGGATTGTGACGTAACTACATTCCCCTCCTCCCTACCA---------------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            416556 50 -    584178 -TGCGGCGATTATGATAGTTAC------------GACGTAAGTGCTTTCCGTCTCTCCTGACC----------------
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018502759v1     9404313 72 +  14477005 I
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M

a score=1114669.000000
s hg38.chr15_KI270851v1_alt   261519 174 +    263054 GTCAGCACCATGTCTAAGTCGCCGCTCCACGATGGGGGAGGGAAGCACAGGGTTGGGACCCAGCTCCTTGGAGAC----GCCAGCACAAAGAACCCAGGGAGGTCGACCTTGAGGCAGCAGGAGGGGAGGGCAGAGTCTGCAGCAGGGAGTCCCAGGAGTCACCAGCCCAAAGTCACC
s panTro5.chr15             72205441 174 -  83230942 GTCAGCACCATGTCCAAGTCGCCGCTCCACGATGGGGGAGGGAAGCACAGGGTTGGGACCCAGCTCCTTGGAGAC----GCCAGCACAAAGAACCCAGGGAGGTCGACCTTGAGGCAGCAGGAGGGGAGGGCACAGTCTGCAGCAGGGAGTCCCAGGAGTCACCAGCCCAAAGTCACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71442225 173 -  99763055 GTCAGCACCATGTCCAAGTCGCCGCTCCACGAT-GGGGAGGGAAGCACAGGGTTGGGACCCAGCTCCTTGGAGAT----GCCAGCACAAAGAACCCAGGGAGGTCGACCTTGAGGCAGCAGGAGGGAGGGGCACAGTCTGCAGCAGGGAGTCCCAGGATTCACCAGTCCAAAGTCACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       21505 173 -    281578 GTCAGCACCATGTCCAAGTCGCCGCTCCACGATGGGGGAGGGAAGCACAGGGTTGGGACCCAGCTCCTTGGAGAC----GCCAGCACAAAGAACCCAGGGAGGTCGACCTTGAGGCAGCAGGAGGGGAGGGCAGAGTCTGCAGCAGGGAGTCCCAGGAGTCACCAG-CCAAAGTCACC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8438517 173 + 169600520 ATCAGCGCAATGTCCGAGTC-CCACTCCACTATGGGGGAGGGAAACACAGGGTTGGGACCTAGTTCCTTGCAGAC----ACCAGCACAAAGAGCCCAGGGAGTTTGACCTTGAGGCAGCAGGAGGGGAGGACCGAGTCTGCAGTAGGGAGCCCCAGGAATCACCAGCCCAAAGTCACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91237534 174 - 171882078 ATCAGTACGATGTCTGAGTCACCACTCCACAATGGGGGAGGGAAACACAGGGTTGGGACCCAGGTCCTTGGAGAC----GTCAGCACAAAGAGCCAAGGGAGGTCGACCTTGAGGCAGCAGGAGTGGACGGTAAAGTCCGCAGCAGAGAGCCCCAAGAGTGACCAGCCCAAAGTCACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      418469 174 -   9617498 ATCAGTACGATGTCTGAGTCACCACTCCACAATGGGGGAGGGAAACACAGGGTTGGGACCCAGGTCCTTGGAGAC----GTCAGCACAAAGAGCCAAGGGAGGTCGACCTTGAGGCAGCAGGACTGGACGGTAAAGTCCGCAGCAGAGAGCCCCAAGAGTCACCAGCCCGAAGTCACC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4971131 174 +  14009840 ATCAGTGTGATGTCTGAGTCGCCACTCCACAATGGGGGAGGGAAACACAGGGTTGGGACCCAGGTGCTTGGAGAC----ACCAGCACAAAGAGCCAAGGGAGGTCGACCTTGAGGCAGCAGGACTGGACAGTAAAGTCCGCAGCAGAGAGCCCCAAGAGTCACCAGCCCGAAGTCACC
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7586781 174 +  58131712 ATCAGTGCAATGGCTGAGTCACCGATCCATGATGGTGGAGGGGGACATAGAGCTGGGACCCAGGTCCTTGGAGAC----ACCAGTCCAAAGAGCCCAGGGAGGTTGGGCTTGGGTCAGCAGGAGGGGAGAGTAGAATCTGCAGCAGGGAACCCCAGGAATCACCAGTTCAAAGTCACC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      123236 174 +   7069685 ATCAGTGTGATGTCTGAGTCGCCACTCCACAATGGGGGAGGGAAACACAGGGTTGGGACCCAGGTCCTTGGAGAC----ACCAGCACAAAGAGCCAAGGGAGGTCGACCTTGAGGCAGCAGGACTGGACAGTAAAGTCCGCAGCAGAGAGCCCCAAGAGTCACCAGCCCGAAGTCACC
i manLeu1.NW_012109919v1    C 0 C 0
s calJac3.chr10             72462336 174 - 132174527 ATCAGTGCCACGCCCAAGTTGCTGCTCCATGATGGGGGAGGGAAGCACAGGGTTGGGACCCAGGTCTTTGGAGAG----GCCAGCTGAAATAGCCCTGGGAGGTTGAGGTTGGAGAAGAAGGAGGGGAGTGCAGAGTCTGCAGCAGGAAGCCCAAGGAGTCACCAGCCCAAAGTCACC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1014657 173 -   1842816 ATCAAGGAGATGCCTGAGTCACTGCTCCATGATGGGGGAGGGTGGTGCAGGGCTGGGACCCAGGTCCTTGGAGAC----GCCAGCCCAAAGAGCACAAGTAGGTTGCAA-TGGGGGAGCAGGAGGGGAGGGCAGAGTCTGCAGCAGGGATTCCCAGGAGTCACCAGCCCAAAGTCACC
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9404385 174 +  14477005 ATCGGCGTGACGTCCGAGTCGCCGCTCTGCGATGGGGGAGGGGAACACAGGGCCAGGACCCAGGTCCTTGGAGAC----TCGAGCCCGAAGAGCCCAGAGAGGGCCGGTTTGGGGCGGCAGGAGGTGAGGGCCGAGTCTGGAGCCGGGAGCTCCTGGAGTCTAGGGCCCAAAGTCACT
i aotNan1.NW_018502759v1    I 72 I 12
s otoGar3.GL873533          30969123 166 +  31380117 --------TACGACCCACTCTCTGCTCCGCGATGGGGGAGGGGAACCTAGGGCCGGGATCCAGGTCCTTGAAGAT----GGGAGCCCACAGAGCTCAGGAAGAGGCAATTTGGGGCAGTGGGAAGCTAGGACTGAGTTCAGAGCAAGGACCCCCTGGAGTCATCAGTCCAAAGTCACC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5838788 168 -  61074082 ---------ACGCCCGAGTCGCCGCTCCGCGGTGGGGGAGGGGAAAGCAGGGCTGGGACCGAGGTCCCTGGACACCGGGACCGGCCTGGAGAGCCCAGGTC-CTCCGCTTCTGGGTGGCAGAAGGCTAGGGCCAAACCTGGAGCAGGGAGCCCGGGGAGTCACCAGCCCAAAGTCAcc
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            416606  79 -    584178 --------CACCGTCGAGTCGCCTCTCCGCGGTGGGGGAGGGCAGCGCAGCGCCCGTACCGAGGTCCCGGGAGAT---------------------------------------------------------------------CGGGAGCCCAAG----------------------
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M

a score=14898.000000
s hg38.chr15_KI270851v1_alt   261693 2 +    263054 CA
s panTro5.chr15             72205615 2 -  83230942 CA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71442398 2 -  99763055 CA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       21678 2 -    281578 CA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8438690 2 + 169600520 CA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91237708 2 - 171882078 CA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      418643 2 -   9617498 CA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4971305 2 +  14009840 CA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7586955 2 +  58131712 CA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      123410 2 +   7069685 CA
i manLeu1.NW_012109919v1    C 0 C 0
s calJac3.chr10             72462510 2 - 132174527 CA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1014830 2 -   1842816 CA
i cebCap1.NW_016107745v1    C 0 C 0
s otoGar3.GL873533          30969289 2 +  31380117 CA
i otoGar3.GL873533          C 0 C 0
e dasNov3.JH564958            416685 0 -    584178 C
e canFam3.chr9               5838956 0 -  61074082 C
e aotNan1.NW_018502759v1     9404559 12 +  14477005 I
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M

a score=71013.000000
s hg38.chr15_KI270851v1_alt   261695 17 +    263054 GGGATGATTGGCGAGGG
s panTro5.chr15             72205617 17 -  83230942 GGGATGACTGGCGAGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71442400 17 -  99763055 GGGATGACTGGCGAGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       21680 17 -    281578 GGGATGACTGGCGAGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8438692 17 + 169600520 GGGACAACTGGCGAGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91237710 17 - 171882078 GGGACAACTGACAAGGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012017799v1      418645 17 -   9617498 GGGACAACTGACAAGGG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4971307 17 +  14009840 GGGACAACTGACAAGGG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7586957 17 +  58131712 GGGATGAATGGCAATGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      123412 17 +   7069685 GGGACAACTGACAAGGG
i manLeu1.NW_012109919v1    C 0 C 0
s calJac3.chr10             72462512 17 - 132174527 GGGATGACTGGTGAGGG
i calJac3.chr10             C 0 I 15
s cebCap1.NW_016107745v1     1014832 17 -   1842816 GAAATGACCAATGAGGG
i cebCap1.NW_016107745v1    C 0 I 9
s dasNov3.JH564958            416685  8 -    584178 -------TTGGCCGG--
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9               5838956  0 -  61074082 C
e aotNan1.NW_018502759v1     9404559 12 +  14477005 I
e otoGar3.GL873533          30969291  0 +  31380117 C
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M

a score=44686.000000
s hg38.chr15_KI270851v1_alt   261712 9 +    263054 TGGGGCCTG
s panTro5.chr15             72205634 9 -  83230942 TGGGGCCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71442417 9 -  99763055 TGGGGCCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       21697 9 -    281578 TGGGGCCTG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8438709 9 + 169600520 TGGGGCCTA
i rheMac8.chr7              C 0 I 15
s macFas5.chr7              91237727 9 - 171882078 TGGGGCCTG
i macFas5.chr7              C 0 I 15
s macNem1.NW_012017799v1      418662 9 -   9617498 TGGGGCCTG
i macNem1.NW_012017799v1    C 0 I 15
s cerAty1.NW_012001627v1     4971324 9 +  14009840 TGGGGCCTG
i cerAty1.NW_012001627v1    C 0 I 15
s chlSab2.chr26              7586974 9 +  58131712 GGGGGCCTG
i chlSab2.chr26             C 0 I 16
s manLeu1.NW_012109919v1      123429 9 +   7069685 TGGGGCCTG
i manLeu1.NW_012109919v1    C 0 I 3518
s calJac3.chr10             72462544 9 - 132174527 GGGAACCCA
i calJac3.chr10             I 15 C 0
s cebCap1.NW_016107745v1     1014858 9 -   1842816 GGAGACCCA
i cebCap1.NW_016107745v1    I 9 C 0
s aotNan1.NW_018502759v1     9404571 9 +  14477005 GGGGACCGA
i aotNan1.NW_018502759v1    I 12 C 0
e dasNov3.JH564958            416693 0 -    584178 C
e canFam3.chr9               5838956 0 -  61074082 C
e otoGar3.GL873533          30969291 0 +  31380117 C
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M

a score=590483.000000
s hg38.chr15_KI270851v1_alt   261721 115 +    263054 GCTCCTTGGAGATGAGAGCCCAAAGAGCCCAGGGAGATCAAGCTTGGGGCGGCAGGAGATGAGGG-----CCCAGTAACGGAGCGGGAAGTCCCAGGAGTCACCCACCCAAAGTCACCCT
s panTro5.chr15             72205643 115 -  83230942 GCTCCTTGGAGATGAGAGCCCAAAGAGCCCAGGGAGATCAAGCTTGGGGCGGCAGGAGATGAGGG-----CCCAGTAATGGAGCGGGAAGCCCCAGGAGTCACCCACCCAAAGTCACCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71442426 115 -  99763055 GCTCCTTGGAGATGAGAGCCCAAAGAGCCCAGGGAGATCAAGCTTGGGGCGGCAGGAGATGAGGG-----CCCAGTAATGGAGCGGGAAGCCCCAGGAGTCACCCACCCAAAGTCACCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       21706 115 -    281578 GCTCCTTGGAGATGAGAGCCCAAAGAGCCCAAGGAGATCAAGCTTGGGGCGGCAGGAGATGAGGG-----CCCAGTAACGGAGCGGGAAGCCCCAGGAGTCACCCACCCAAAGTCACCCT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8438733 115 + 169600520 GGTGCTTGGAAACGTGAGCCCGAAGAACCCAGGGAGGTCAAGTTTGGGTAGGCAGGAGGTGAGAG-----CCCAGTAATGGAGTGGGAAGCCCCAGTAGTCACACACCCAAAGTCACCCT
i rheMac8.chr7              I 15 C 0
s macFas5.chr7              91237751 114 - 171882078 GGTCCTTGGAGACTCGAGCCC-AACAGCCTAGGGAGGTCAAGCTTGGGGCAGCAGGAGGTGAGGG-----CCCCGTAATGGAGCAGGGAGCCCCAGGAGTCACCTGCCCAAAGTCAACCT
i macFas5.chr7              I 15 C 0
s macNem1.NW_012017799v1      418686 114 -   9617498 GGTCCTTGGAGACTCGAGCCC-AACAGCCTAGGGAGGTCAAGCTTGGGGCAGCAGGAGGTGAGGG-----CCCCGTAATGGAGCAGGGAGCCCCAGGAGTCACCTGCCCAAAGTCAACCT
i macNem1.NW_012017799v1    I 15 C 0
s cerAty1.NW_012001627v1     4971348 115 +  14009840 GGTCCTTGGAGACGCGAGCCCAAAGAGCCTAGGGAGGTCAAGCTTGGGGCAGCAGGAGGTGAGGG-----CCCCGTAACGGAGCAGGGAACCCCAGGAGTCACCTGCCCAAAGTCAACCT
i cerAty1.NW_012001627v1    I 15 C 0
s chlSab2.chr26              7586999 114 +  58131712 CGTCCTTGGAGAGGTGAGCCCAAAGAACCCAGGGAGGTTGGGCTTGGGGTGGCAGGATGTGAGGG-----CTGAGT-ATGGAGTGGGGAGCCCCAGTAGTCACCCACCCAAAGTCACCCT
i chlSab2.chr26             I 16 C 0
s manLeu1.NW_012109919v1      126956 115 +   7069685 GGTCCTTGGAGACGCGAGCCCAAAGAGCCTAGGGAGGTCTAGCTTGGGGCAGCAGGAGGTGAGGG-----CCCCGTAACGGAGCAGGGAACCCCAGGAGTCACCTGCCCAAAGTCAACCT
i manLeu1.NW_012109919v1    I 3518 C 0
s calJac3.chr10             72462553 114 - 132174527 GGTCCTTGGAGACACAAGCCCAATCAGCCCAGGGAGGTTGATCCTGGGGAGGCAGGAGGTGAAGG-----CCACGT-ATAGAGTGGGGAGTCCCAGGAGTCACCCGCCCAAAGTCACTCT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1014867 114 -   1842816 GGTCCTTAGAGACATGAGCCCACAGAGCCCAGGGAGGTCAGGTTTGGGGCAGGAAAAGGTGAGGA-----CCAAGT-AGGGAGCAGGGAGCCTCAGGGTTTACACATCCAAAGTCACCCT
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9404580 114 +  14477005 GGTCCTTGGAGACACCAGCCCAAAGAGCCCAGGGAGGTTGGACCTGGGGCGGCAGGAGGTCAGGG-----CCGAGT-CTGGAGCGGGGAGCCCCGGGAGTCACCAGCCCAAAGTCACCcg
i aotNan1.NW_018502759v1    C 0 C 0
s canFam3.chr9               5838956  10 -  61074082 --------------------------------------------gggggcggcg------------------------------------------------------------------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            416693  94 -    584178 ------------------------GAGCCCAAGGTGGCCCGGTTCTGGGCGGCAGGGGGCGAGGGCTGCTCCCGGTGCCGGTGCCGGTG--CCCCGGGGTCAAGAGCCCAAAGTCACCTG
i dasNov3.JH564958          C 0 C 0
e otoGar3.GL873533          30969291   0 +  31380117 C
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M

a score=127103.000000
s hg38.chr15_KI270851v1_alt   261836 16 +    263054 GGGGTGATTGGC----GAGG
s panTro5.chr15             72205758 16 -  83230942 GGGGTGATTGGC----GAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71442541 16 -  99763055 GGGGTGATTGGC----GAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       21821 16 -    281578 AGGGTGATTGGC----GAGG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8438848 16 + 169600520 GGGGTGATTGGT----GAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              91237865 16 - 171882078 GGGGTGATTGGC----AAGG
i macFas5.chr7              C 0 N 0
s macNem1.NW_012017799v1      418800 16 -   9617498 GGGGTGATTGGC----AAGG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4971463 16 +  14009840 GGGGTGATTGGC----AAGG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7587113 16 +  58131712 GGGGTGATTGGT----GAGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      127071 16 +   7069685 GGGGTGATTGGC----AAGG
i manLeu1.NW_012109919v1    C 0 C 0
s calJac3.chr10             72462667 20 - 132174527 GGGGTGATTGGCGATGGATG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1014981 16 -   1842816 GGGGTGATTGGC----AAGG
i cebCap1.NW_016107745v1    C 0 C 0
s aotNan1.NW_018502759v1     9404694 16 +  14477005 ggggcgactggc----gagg
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30969291 16 +  31380117 GGGGCAACTGGC----GAGG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5838966  7 -  61074082 ---------ggc----gagg
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            416787 16 -    584178 GGAGCGACCGGC----TAGG
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M

a score=444518.000000
s hg38.chr15_KI270851v1_alt   261852 83 +    263054 GCAAGGACTGGGCTGCTTTCTGAAGGGGTGGGGCTGACTGACAAAACTT-TGATGGGGGTAGCCCA-AGGCACCGGGGTTGGGGG
s panTro5.chr15             72205774 83 -  83230942 GCAAGGACTGGGCTGCTTTCTGAAGGGGTGGGGCTGACTGACAAAACTT-TGGTGGGGGTAGCCCA-AGGCACCGGGGTTGGGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71442557 82 -  99763055 GCAAGGACTGGGCTGCTTTCTGAAGGGGTGGGGCTGACTGACAAAACTT-TGGT-GGGGTAGCCCA-AGGCACCGGGGTTGGGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       21837 83 -    281578 GCAAGGACTGGGCTGCTTTCTGAAGGGGTGGGGCTGACTGACAAAACTT-TGGTGGGGGTAGCCCA-AGGCACCGGGGTTGGGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8438864 84 + 169600520 GCAGGGACTGGGCTTCTTGCTGAAGGGGCAGGGCTGATTGACAAGACTT-TGGTGGGGGCAGCCCAGAGGTGCCGGGGTTGGGGG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012017799v1      418816 84 -   9617498 GCAGGGACTGGGCTGCTTGCTGAAGGGGCAGGGCTGATTGACAAGACTT-TGGTGGGGGGACCCCAGAGGCGCCGGTGTTGGAGG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4971479 84 +  14009840 GCAGGGACTGAGTTGCTTGCTGAAGGGGCAGGGCTGACTGACAAGACTT-TGGTGGGGGGACCCCAGAGGCGCCCGTGTTGTGGG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7587129 84 +  58131712 GCAGGGGCTGGGCTGCTTGCTGAAGGAGTGGGACTGACTGCCAAGACTT-TGGTGGGGGGATCCCAGAGGTGTCAGGGTTGGGGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      127087 84 +   7069685 GCAGGGACTGGGTTGCTTGCTGAAGGGGCAGGGCTGACTGACAAGACTT-TGGTGGGGGGACCCCAGAGGCGCCCGTGTTGTGGG
i manLeu1.NW_012109919v1    C 0 C 0
s calJac3.chr10             72462687 84 - 132174527 GCAGGGACGGGGCTGCTTGCTGAAAGGATGGGTTTGACTGACAAGACGT-TGGTGGGGGGAGCTCAGAGGCTCCAAGGTTGGGGG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1014997 84 -   1842816 GCAGGGGCTGGGCCCCTTGCTGAAGGGGTGGGGCTGACTGACAAGACTT-TGGTAGGGGGAGCCCAGAGGCACCGGGGTTGGGGG
i cebCap1.NW_016107745v1    C 0 I 161
s aotNan1.NW_018502759v1     9404710 74 +  14477005 gcgggggttgggc----ggttgagggggcggggCTGGCTGACAAGACTT-TGGTGGGGGCAGCCCAGAGGCGCCGGGGG------
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30969307 73 +  31380117 GCAGGGGTTGGGC----TACTGAGGGGGCGGGGCTGGCTGAAAAGACTT-TGGTGAGAGAAGCCAAGCGACG-CGGTGC------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5838973 74 -  61074082 gcgggggctgggcagcc-----ggggggcgggACTGGCTGAGACGACTTGGGGTGGGGGGCGCCAAGGGGCGTCACGGG------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            416803 71 -    584178 GCGAGGGCTGGGCGGC---CGAGGGGGGCGGGACTGGTTGAGAAGACCA-----GGTGGGCGCCAAGGAGAGCCATGGG------
i dasNov3.JH564958          C 0 C 0
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M

a score=32571.000000
s hg38.chr15_KI270851v1_alt   261935 10 +    263054 GAACAGTCCA
s panTro5.chr15             72205857 10 -  83230942 GACCAGTCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71442639 10 -  99763055 GACCAGTCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       21920 10 -    281578 GACCAGTCCA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8438948 10 + 169600520 GCCCAGTTTG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012017799v1      418900 10 -   9617498 TCCCAGTCAG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4971563 10 +  14009840 GCCCAGTCCG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7587213 10 +  58131712 CCCCAGCCCG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      127171 10 +   7069685 GCCCAGTCCG
i manLeu1.NW_012109919v1    C 0 C 0
s calJac3.chr10             72462771 10 - 132174527 GCCCAGTCCC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9404784 10 +  14477005 GCCCAGCCCG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30969380 10 +  31380117 GGCTAGCTCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5839047  9 -  61074082 -GCTAGCCCC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            416874 10 -    584178 GTTCTCCCCA
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1015081 161 -   1842816 I
e colAng1.NW_012115677v1     3044186 2155 +   3749464 M

a score=971865.000000
s hg38.chr15_KI270851v1_alt   261945 150 +    263054 GTGTGCCTCAGGAGTCGTATAGACTCTGGCAGGGGTCTTGTCATCAGAGGGGA-TCT-GTGGCTGGGTTGAGGGGCTATGACCTAGTGCGTTTTTACCTTTTTCTTGGCTGCAGCCAATTTGTTGTGTTGAGTTTCTTCTGCC------ATCGC---------------AGGG
s panTro5.chr15             72205867 150 -  83230942 GTGTGCCTCAGGAGTCGTATAGACTCTGGCAGGGGTCTTGTCATCAGAGGGGT-TCT-GTGGCTGGGTTGAGGGGCTATGACCTAGTGCGTTTTTACCTTCTTCTTGGCTGCAGCCAATTTGTTGTGTTGAGTTTCTTCTGCC------ATCGC---------------AGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71442649 150 -  99763055 GTGTGCCTCAGGAGTCGTATAGACTCTGGCAGGGGTCTTGTCATCAGAGGGGA-TCT-GTGGCTGGGTTGAGGGGCTATGACCTAGTGCGTTTTTACCTTTTTCTTGGCTGCAGCCAATTTGTTGTGTTGAGTTTCTTCTGCC------ATCGC---------------AGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       21930 165 -    281578 GTGTGCCTCAGGAGTCGTATAGACTCTGGCAGGGGTCTTGTCATCAGAGGGGA-TCT-GTGGCTGGGTTGAGGGGCTATGACCTAGTGCGTTGTTACCTTTTTCTTGGCTGCAGCCAATTTGTTGTGTTGAGTTTCTTCTGCC------ATCGCAGGTTGGGGAGGGGAAGGG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8438958 150 + 169600520 GTGTGCCTCAGGAGTGATACGGACTCTGGTAGTGGTCTTGTCATCAGAGGGGA-TCT-GTGGCTGGGTTGGGGGGCCATGACCTGGTGCATTTTTACCTTTCTCTTGGCTAAGGCCAGTTTACTCTGTCGAGTTTCTTCTGCC------ATCGC---------------AGGG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012017799v1      418910 150 -   9617498 GTGAGTCTCAGGAGTGGTAAGGACTCTGGCAGTGGTCTTGCCATCAGAGGGGA-GCT-CTGGCTGGGTTGGGGGACCATGACCTGGTGCGTTTTTACCTTTTCCTTTGCTGTGGCCAATTTGTTCAGTCAAGTTTCTTCTGCC------ATCAC---------------GGGG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4971573 150 +  14009840 GTGTGTCTCAGGAGTGGTATGGACTCTGGCAGTGGTCTTGTCATCAGAGGGGA-TCT-GTGGCTGGGTTGGGGGATCGTGACCTGGTGTGTTTTTACCTTTTCCTTTGCTGCGGCCAATTTGTTCAGTCAAGTTTCTTCTGCC------ATCGC---------------GGGG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7587223 149 +  58131712 GTGTGCCTCAGGAGTGGTATGGACTCTGGCAGTGGTCTTGTCATTGGAGGGGA-TCT-CTGGCTGGATTGGGGGGCCACGACCTGGTGC-TTTTTACCTTTTTCTTGGCTGCTGCCAATTTGCTCTCTCGAGTTTCTTCTAAC------ATCGC---------------GGGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      127181 150 +   7069685 GTGTGTCTCAGGAGTGGTATGGACTCTGGCAGTGGTCTTGTCATCAGAGGGGA-TCT-GTGGCTGGGTTGGGGGATCGTGACCTGGTGCGTTTTTACCTTTTCCTTTGCTGCGGCCAATTTGTTCAGTCAAGTTTCTTCTGCC------ATCGC---------------GGGG
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3046351 150 +   3749464 GTGTGCCTCAGGAGTGATATCGACTCTGGCAGTGGTCTTGTTGTCAAAGGGGA-TCT-GTGGCTAGGTTGGGGGGCCATGACCTGGTGCATATTTACCTTTTTCTTGGCTAAGGCCAATTTACTCTGTCGAGTTTCTTCTGCC------ATCGC---------------AGGG
i colAng1.NW_012115677v1    M 2155 C 0
s calJac3.chr10             72462781 155 - 132174527 GTGTGCCTCAGGAGTGGTATGGACTCTGGCAGCAGTCTTGCCATCGGAGGGGA-TCT-GTGGCTGGGTTGGGGGGCCATGACCTGGTACGTC-TTACCTTTTTTTTTGGCTCTGCCAATTGGCTATCTCGAGACTTTGTGGACGTTGATATCGC---------------GGGG
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9404794 149 +  14477005 GTGTGCCTCAGGAGTGGCACGGACTCTGGCCGCGGTCCTGCCATAGGAGGGGG-GCT-GGGGCTGGGTAGGGGGGCCGCGACCCGGCGCGCT-TTACCTTTTTCTTCGCTGCGGCCAATTTGCTCTGTCGGGTTTCTTCCGAC------ATCGC---------------GGGG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30969390 150 +  31380117 ACGTGTCTCAGGAGTAGCACAGACTGTGGCCATAGTCCTACCGTGGGAGGGGAGCCT-CGGGCTGGGTCGGGGAGCCGCGACCCGGCGTGTT-TTACCTTTTTCCTGGCCGAGGCCAATTTTTGCTGTCGGGTTTCTTCCGAC------ATCCC---------------GTGG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5839056 148 -  61074082 GTGTGCCTCAGGGGCAGCAAAGATTCTGGCCACGGCCCGGCCGTCCGAGGGG--CCT-TTGGCTGGGTCAGGGAGCCGCGACCCGGCACGTT-TTACCTTTTTCTTGGCCGCAGCCAATTTGCTCTGTCGGGTTTCTTCCGAC------ATCCC---------------GGGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            416884 147 -    584178 --GTGCCTCAGGGGCGGCTCAGACTCTGGTCACGGTGAGGGGGTTGGAGGGGG-CGTCGGGGCTGGGTCG-GGAGCCTCGACCCAGCGCGCT-TTACCTTTTTCTTCGCTGCAGCCAATTTGCTCTTTCGGGTTTCTTCCGAC------ATCGC---------------GGAA
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1015081 161 -   1842816 I

a score=223707.000000
s hg38.chr15_KI270851v1_alt   262095 34 +    263054 TGGGGAGGG--AG---GCAGGGT---TGGGGCCACAGCAGCA
s panTro5.chr15             72206017 34 -  83230942 TGGGGAGGG--AG---GCAGGGT---TGGGGCCACAGCAGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71442799 34 -  99763055 TGGGGAGGG--AG---GTAGGGT---TGGGGTCACAGCAGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       22095 34 -    281578 TTGGGAGGG--AG---GAAGGGT---TGGGGTCACAGCAGCA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8439108 34 + 169600520 TGGGAAGGG--AA---GCGGGAT---TGGGGCCACGTCAGCA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012017799v1      419060 34 -   9617498 TGGGGAGGG--AG---GTGGGGT---TGGGGCCACCTCAGCG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4971723 34 +  14009840 TGGGGAGGG--AG---GTGGGGT---TGGGGCCACGTCAGCG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7587372 32 +  58131712 TGGGGAGGG--AG---GCAGGGT---TGGGGCCACATCAG--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      127331 34 +   7069685 TGGGGAGGG--AG---GTGGGGT---TGGGGCCACGTCAGCG
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3046501 34 +   3749464 TGGGGAGGG--AA---GCGGGAT---TGGGGCCAGGTCAGCA
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72462936 34 - 132174527 TGGGGAGGG--AG---GCGGGGT---TGGGGTCACATCAGCA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1015242 34 -   1842816 TGGGGAGGG--AG---GTGGGGT---TGGGGCCACATCAGCA
i cebCap1.NW_016107745v1    I 161 I 39
s aotNan1.NW_018502759v1     9404943 34 +  14477005 CGGGGAGGG--AG---GCGGGGT---TGGGGCCACATCAGCG
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30969540 39 +  31380117 GGGGGAGGG--GGAGAGCGGGATATACGGGAACTCTTCAAG-
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5839204 33 -  61074082 CGGGGAGGGGTAA---GGGGGGT------GGCCACATCACCG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            417031 31 -    584178 --AGGGGCG--GG---GTAAGGG----GGGGCCACATCACCG
i dasNov3.JH564958          C 0 C 0

a score=129496.000000
s hg38.chr15_KI270851v1_alt   262129 39 +    263054 AAATCGCAATGAGAACCG----ATCAAGGCCTCCAGTCACCTT
s panTro5.chr15             72206051 39 -  83230942 AAATCTCAATGAGAACCG----ATCAAGGCCTCCAGTCACCTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71442833 38 -  99763055 CAATCTCAATGAGAACCG----ATCAA-GCCTCCAGTCACCTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       22129 39 -    281578 AAATCTCAGTAAGCACCG----ATCAATGCTTCCAGTCACCTA
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8439142 39 + 169600520 AAATCCCAGCGAGCACTG----ATCAACGCCTCCAGTCACCTA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012017799v1      419094 39 -   9617498 AAATCCCAGCGAGCACTG----ATCAACACCTCCAGTCGCCTA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4971757 39 +  14009840 AAATCCCAGTGAGCACTG----ATCAACACCTCCAGTTGCCTA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7587404 19 +  58131712 ------------------------GAACACCTCCAGTCACCTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012109919v1      127365 39 +   7069685 AAATCCCAGTGAGCACTG----ATCAACACCTCCAGTTGCCTA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3046535 39 +   3749464 AAATCCCAGCGAGCACTG----ATCAACGCCTCCAGTCACCTG
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72462970 38 - 132174527 -AAATCAGGCAAGCACTG----GTAAACAGCTCCAGTCACCTA
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018502759v1     9404977 35 +  14477005 CAATCCCGGCAACCACTG---CGTAAG-----TCAGTCAGCCA
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30969579 39 +  31380117 AGATCCCGGCAACCCCCG----CGAAATTGCTTCCGCTTGCTA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5839237 43 -  61074082 CGATCCCGGCAACCACCGCGGCATCACTTCCGGCAGTCACCGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            417062 39 -    584178 CGATCCCGGCAGACACTT----CGCAATTGCTTCCGCTCGTTA
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107745v1     1015276 39 -   1842816 I

a score=577549.000000
s hg38.chr15_KI270851v1_alt   262168 82 +    263054 CCAGGCAGCTGTG-TGACTGAGCCAGAGGA-GGCGTAACC--AGGGC---CCCAGTAGAATGCGGAATAGGGGCGTGGCCTTAATGCTC
s panTro5.chr15             72206090 82 -  83230942 CCAGGCAGCTGTG-TGACTGAGCCAGAGGC-CGCCTAACC--AGGGC---CCCAGTAGAATGCAGAATAGGGGCGTGGCCTTAATGCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71442871 82 -  99763055 CCAGGCAGCTGTG-TGACTGAGCCAGAGGA-GGCGTAACC--AGGGC---CCCAGTAGAATGCGGAATAGGGGTGTGGCCTTAATGCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       22168 82 -    281578 CCAGACAGCTGTG-TGACTGAGCCAGAGGA-GGCGTAACC--AGGGC---CCCAGTAGAATGCGGAATAGGGGCGTGGCCTTAATGCTC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8439181 82 + 169600520 CCAGGCAGCTGAG-CGACTGAACCAGAGGA-GGTGTAACC--AGGAC---TCCAGTAGAATGCAGAAAAGGGGCGTGGCCTTAATGCTC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012017799v1      419133 82 -   9617498 CCGGGCAGCTGTG-GGACTGAGCCAGAGGA-GGCATAACC--AGGGC---CCCAGTAGAATGCAGAAAGGGGGTGTGGCCTTAATGGTA
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4971796 82 +  14009840 CTGGGCAGCTGTG-CGACTGAGCCAGAGGA-GGCATAACC--AGGGC---TCCAGTAGAATGCAGAATGGGGGTGTGGCCTTAATGCTA
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7587423 82 +  58131712 ACAGTCAGCTGTG-TGACTGAGCCAGAGGA-GGCGTAACC--AGGGA---CCCAATAGAACACAGAAAAGGGGTGTGGCCTTAATGCTC
i chlSab2.chr26             C 0 I 4247
s manLeu1.NW_012109919v1      127404 82 +   7069685 CTGGGCAGCTGTG-CGACTGAGCCAGAGAA-GGCATAACC--AGGGC---TCCAGTAGAATGCAGAATGGGGGTGTGGCCTTAATGCTA
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3046574 82 +   3749464 CCAGGCAGTTGAC-CAACTGAACCAGAGGA-GGCGTAACC--AGGGC---TACAGTAGAATGCAGGAAAGGGGCGTGGCCTTAATCCTC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72463008 81 - 132174527 CCAGGCAGCTGTG-TGACTGAGCCAG-GGA-GGCGTAACC--AGGGC---CCCACTAGAACATAAATAGGGGGCGTGGCCTTAATGCTC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1015315 83 -   1842816 CCAGGCAGCTGTGTTGACTGAGCCAGAGGA-GGCGTAACC--AGGGC---CACACTAGAATGTAGAATAGGGGCGTGGCCTTCATGCTC
i cebCap1.NW_016107745v1    I 39 C 0
s aotNan1.NW_018502759v1     9405012 82 +  14477005 CCGCGCAGCTGTG-CGACGGAGCCAGAGGA-GGCGTAACC--AGGGC---TCCATTAGAGGGCAGAATAGGGGCGTGGCCTCAACGATC
i aotNan1.NW_018502759v1    C 0 C 0
s otoGar3.GL873533          30969618 84 +  31380117 CCGCGCAGAAGTG-CAACTGAGCCAGAACA-GGCGGGACC--AAGGCGAGCCTAGGGAAACATA-AATGTGGGCGTGGCCCCAATGCTC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5839280 78 -  61074082 ----GCCGGTGTG-CGACTGAGCCAGAAAG-GGAGGGACCCTAGAGT---TTC--TAGGTAGCAGCTGGTGGGCGTGGCCTCAATGCTC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            417101 85 -    584178 CCGCGCCGATGCG-GGTCTGAGCCAGGGAAGGGAGGGACC--AGGGC-GGTCCTAGGCAACACAGAATGTGGGCGTGGCCTAAATGCTC
i dasNov3.JH564958          C 0 C 0

a score=404281.000000
s hg38.chr15_KI270851v1_alt   262250 79 +    263054 CAAGCCCATTGGTCAATGAGAAAGATGAAAGGGAAAGGGGGCGTGGC-------CAGACAGC----AGCGTGTCCAGAGGGCCCTGTGGC
s panTro5.chr15             72206172 79 -  83230942 CAAGCCCATTGGTCAATGAGAAAGATGAAAGGGAAAGGGGGCATGGC-------CAGACAGC----AGCGTGTCCAGAGGGCCCTGTGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71442953 79 -  99763055 CAAGCCCATTGGTCAATGAGAAAGATGAAAGGGAAAGGGGGCGTGGC-------CAGACAGC----AACGTGTCCAGAGGGCCCTGTGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       22250 78 -    281578 CAAGCCCATTGGTCAATGAGAAAGATGAAAGGG-AAGGGGGCGTGGC-------CAGACAGC----AGCGTGTCCAGAGGGCCCTGTGAC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8439263 85 + 169600520 CAAGCCCATTGGTCAATGAG-AAGATGAAAGGGAATTGGGGCGTGGCCAATCAGCAGGCAGC----AATGTGTCCAGAGGGGCCTGTGGC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012017799v1      419215 78 -   9617498 CAAGCCCATTGGTCAATGAGAAAGATGAAGGGGAA-AGGGGTGTGGC-------CAGGCAGT----AGTATGTACAGAGAGACTTGTGGC
i macNem1.NW_012017799v1    C 0 I 1
s cerAty1.NW_012001627v1     4971878 78 +  14009840 CAAGCCCATTGGTCAGTGAGAAAGAGGAAGGGGAA-AGGGGCGTGGC-------CAGGCAGT----AGTATGTACAGAGAGACTTGTGGC
i cerAty1.NW_012001627v1    C 0 I 1
s manLeu1.NW_012109919v1      127486 78 +   7069685 CAAGCCCATTGGTCAGTGAGAAAGATGAAGGGGAA-AGGGGCGTGGC-------CAGGCAGT----AGTATGTACAGAGAGACTTGTGGC
i manLeu1.NW_012109919v1    C 0 I 1
s colAng1.NW_012115677v1     3046656 79 +   3749464 CAAGCCCATTGGTCAATGAGAAAGATGAAAGGGAATTGGGGCGTGGC-------CAGGCAGC----AGTGTGTCCAGAGGGACCTGTGGC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72463089 50 - 132174527 CAAGCCCATTGGTCAATCAGAAAGATGAAAGGGA----------------------------------------CCACAGGACCAGTGGT
i calJac3.chr10             C 0 I 1
s cebCap1.NW_016107745v1     1015398 79 -   1842816 CAATCCCATTGGTCAATGAAAAAGATGAAAGGGAAAGGAGGCATGGC-------CAGGCAGC----AGCAGCTCCGGAGGGACCTGTGGT
i cebCap1.NW_016107745v1    C 0 I 1
s aotNan1.NW_018502759v1     9405094 79 +  14477005 CAAGCCTATTGATCAATGAGAAAGATGAAGCGGAAAGGAGGCGTGGC-------CAGGCGGC----GGCGTGGCCAGAGGGACCTGTGGC
i aotNan1.NW_018502759v1    C 0 N 0
s otoGar3.GL873533          30969702 74 +  31380117 CCGGCCCGTTGGTCAATGAGAACGATGAAAGGAAA-AGGGGCGTGGC-------CAGGGAGC----GGTGGGACCCAGAGGTCAAG----
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               5839358 70 -  61074082 CAATTCTATTGGCTGGTGAGAAAGATGAACGGGGGAATGGGCGTGGT-------CAGGTTGC----CGCGAG--CAGGTGGAG-------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958            417186 78 -    584178 CCAGCTCATTGGGCAACGAGAAAGATGAAAGAAAA-GGGGGCGAGGT-------CAGACAGCTGTGAGGGTGACCAGAAGG----GTGGA
i dasNov3.JH564958          C 0 I 1
e chlSab2.chr26              7587505 4247 +  58131712 I

a score=269792.000000
s hg38.chr15_KI270851v1_alt   262329  62 +    263054 TCACAAGGAAAGCTGCCCAT----GCGACCGCTCTCCGCACCCACTCTAAGAGAGGGG-------------------------AGAG-GC-CT------------------
s panTro5.chr15             72206251  64 -  83230942 TCACAAGGAAAGCTGCCCAT----GCAACCGCTCTCCCCACCCACTCTAAGAGAGCGG-------------------------AGAGCGCTCT------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71443032  65 -  99763055 TCACAAGGAAAGCTGCCCGTG---GCAACCGCTCTCCCCACCCACTCTAAGAGAGCGG-------------------------AGAGCGCTCT------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       22328  63 -    281578 TCACAAGGAAAGCTGCCCATG---GCAACCGCTCTCCCCACCCACTCTAAGAGAGCGG-------------------------AGAG-GC-CT------------------
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8439348  62 + 169600520 TCACAAGGAAAGCTGCCCAT----GCAACCACTGTCCCCACCCACTCTGAGAGAGGGA-------------------------AGGG-GC-CG------------------
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012017799v1      419294  62 -   9617498 TCACAAGGAAAGCTGCCCAG----GCAACCGCTGTCCCCGCCCACTCTGAGAGAATGG-------------------------AGGG-GC-CG------------------
i macNem1.NW_012017799v1    I 1 C 0
s cerAty1.NW_012001627v1     4971957  62 +  14009840 TCACAAGGAAAGCTGCTCAG----GCAACCGCTGTCCCCGCCCACTCTGAGAGAATGG-------------------------AGGG-GC-GG------------------
i cerAty1.NW_012001627v1    I 1 C 0
s manLeu1.NW_012109919v1      127565  62 +   7069685 TCACAAGGAAAGCTGCTCAG----GCAACCGCTGTCCCCGCCCACTCTGAGAGAATGG-------------------------AGGG-GC-GG------------------
i manLeu1.NW_012109919v1    I 1 C 0
s colAng1.NW_012115677v1     3046735  62 +   3749464 TCACAAGGAAAGCTGCCCAT----GCAACCACTGTCCCCACCCACTCTGAGAGAGGGA-------------------------AGGG-GC-TG------------------
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72463140  60 - 132174527 TCATGCGGGAAGCTGCCCAA----GAAACTGCTGTCTCCGCCCACTCAGAGAGG--GG-------------------------AGGG-GC-CG------------------
i calJac3.chr10             I 1 C 0
s cebCap1.NW_016107745v1     1015478  60 -   1842816 TCCCAAGGAAAGCTGCCCCT----GCAACTCCTGTCCCTGCCCACTCTGAGAGG--GG-------------------------AGGG-GC-CA------------------
i cebCap1.NW_016107745v1    I 1 C 0
s otoGar3.GL873533          30969776  65 +  31380117 TCACCACGTCAGCTGCGCACGTGCGCAGCCGCTGTCCCTGCCCACTTTGGGGAGACGA-------------------------GGGG-GC-T-------------------
i otoGar3.GL873533          C 0 N 0
s canFam3.chr9               5839428  62 -  61074082 TGACAATGAAAGCTGCGCGC----GCAGCCTCTGGCCCCGCCCACTTCGGGGCGGGGG-------------------------CGGG-AC-CT------------------
i canFam3.chr9              C 0 N 0
s dasNov3.JH564958            417265 105 -    584178 TCACAATGCAGGCTGCGCGC----GCAGCCGCTGTCACCGCCCACATTGGGGGAGGGGCAAAGGCGGTTTCTCCGCCCACGTCAGGG-GG-CGGGGCTAGGCAGCTGTCCT
i dasNov3.JH564958          I 1 C 0
e chlSab2.chr26              7587505 4247 +  58131712 I

a score=35055.000000
s hg38.chr15_KI270851v1_alt   262391 7 +    263054 CCCACTC
s panTro5.chr15             72206315 7 -  83230942 CCCACTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71443097 7 -  99763055 CCCACTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       22391 7 -    281578 CCCACTC
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8439410 7 + 169600520 CCCAATC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012017799v1      419356 7 -   9617498 CCCAGTC
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4972019 7 +  14009840 CCCAGTC
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      127627 7 +   7069685 CCCAGTC
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3046797 7 +   3749464 CCCAATC
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72463200 7 - 132174527 CCCACTC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107745v1     1015538 7 -   1842816 CCCACTC
i cebCap1.NW_016107745v1    C 0 N 0
s dasNov3.JH564958            417370 7 -    584178 CCTACTC
i dasNov3.JH564958          C 0 C 0
e chlSab2.chr26              7587505 4247 +  58131712 I

a score=92951.000000
s hg38.chr15_KI270851v1_alt   262398 25 +    263054 -TGGAAGAGAAGAGGGGCCAGCTTTT
s panTro5.chr15             72206322 25 -  83230942 -TGGAAGAGAAGAGGGGCCGGCTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71443104 25 -  99763055 -TGGAAGAGAAGAGGGGCCGGCTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       22398 25 -    281578 -TGGAAGAGAAGAGGGGCCGGCTTTT
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8439417 25 + 169600520 -TGGGAGAGGGAAGGGGCCGGTTTTT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012017799v1      419363 25 -   9617498 -TGAGAGAGGGAAGGGGTTGGCTTTT
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4972026 25 +  14009840 -TGGGAGAGGGGAGGGGCCGGCTTTT
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      127634 25 +   7069685 -TGGGAGAGGGGAGGGGCCGGCTTTT
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3046804 25 +   3749464 -TCACAGAGGGAAGGGGCTGGCTTTT
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72463207 25 - 132174527 -CGGGAGGAGGGAGGGGTCGGCTTTT
i calJac3.chr10             C 0 C 0
s dasNov3.JH564958            417377 26 -    584178 TGGGCGGAGGGGCGGGGCCCGCTTTT
i dasNov3.JH564958          C 0 N 0
e chlSab2.chr26              7587505 4247 +  58131712 I

a score=134202.000000
s hg38.chr15_KI270851v1_alt   262423 47 +    263054 GCTTTAACAGCTTTA------AAAC---TTTAAAAAATATATGTGTGTATACTTTA--
s panTro5.chr15             72206347 45 -  83230942 GCTTTAAAAGCTTTA------AAAC---TTTAAAAAATATATGTGTGTATACTT----
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71443129 45 -  99763055 GCTTTAAAAGCTTTT------AAAC---TTTAAAAAATATATGTGTGTATACTT----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       22423 45 -    281578 GCTTTAAAAGCTTTA------AAAC---TTTAAAAAATATATGTGTGTATACTT----
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8439442 44 + 169600520 GTTTTAAAAGCTTTA------AAAC----TTAAAAAAAAAAAGTGTGTATACTT----
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012017799v1      419388 45 -   9617498 GCTTTAAAAGCTTTA------AAAC---TTTAAAAAATATATGTGTGCATACTT----
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4972051 45 +  14009840 GCTTTAAAAGCTTCA------AAAC---TTTAAAAAATATATGTGTGCATACTT----
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      127659 45 +   7069685 GCTTTAAAAGCTTCA------AAAC---TTTAAAAAATATATGTGTGCATACTT----
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3046829 42 +   3749464 GTTTTAAAAGCTTTA------AAACTTTTTTAAAAA------GTGTGTATACTT----
i colAng1.NW_012115677v1    C 0 C 0
s calJac3.chr10             72463232 53 - 132174527 CCTTTAAAAGCTTTAAAAAATAAAC---TTTAAAACATATATGTCTGTATACTT--TA
i calJac3.chr10             C 0 N 0
e chlSab2.chr26              7587505 4247 +  58131712 I

a score=2872.000000
s hg38.chr15_KI270851v1_alt   262470 2 +    263054 TA--
s panTro5.chr15             72206392 2 -  83230942 TA--
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71443174 2 -  99763055 TA--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       22468 2 -    281578 TA--
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8439486 2 + 169600520 TA--
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012017799v1      419433 2 -   9617498 TA--
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4972096 2 +  14009840 TA--
i cerAty1.NW_012001627v1    C 0 C 0
s manLeu1.NW_012109919v1      127704 2 +   7069685 TA--
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3046871 4 +   3749464 tata
i colAng1.NW_012115677v1    C 0 C 0
e chlSab2.chr26              7587505 4247 +  58131712 I

a score=1175396.000000
s hg38.chr15_KI270851v1_alt   262472 352 +    263054 TATATAtgtgtgtccgtgtgtgtgtatctgtgtTTTTCTCTATAGCTGTCTTCATTATCCAGCTTCTATGCAAGGTCTATGATTTTGGCCTACATTTTTCATCTTTGATTACAGTATAAAAATTACCAGTATTATCTTAACTGAGATACAGATCCTATAAAAATGGAAAATGCATAGCATGCTTGATGATTAATGAAGCAGACTATATTATCCAACATTCTAATAAGATAAAATA---ATCACAATGATTTCTCTTTTTTGGAAAAATGTTTCTCTTATTCTCCTACGTTTTCGTTA-AGA-TTTTTTTTCTT-AAACAAGAAACATGTCTAATATCTGTAAAAACACAAAGCTTTTG
s panTro5.chr15             72206394 353 -  83230942 TATATATGTGTGTCCGTGTGTGTGTATCTATGTTTTTCTCCATAGCTGTCTTCATTATCCAGCTTCTATGCAAGGTCTATGATTTTGGCCTATATTCTTCATCTTTGATTACAGTACAAAAATTACCAGTATTACCTTAACTGAGATACAGATCCTATAAAAATGGAAAATGCATAGCATGCTTGATGATTAATGAAGCAGACTATATTATCCAACATTCTAATAAGATAAAATA---ATCACAATGATTTCTCTTTTTTGGAAAAATGTTTCTCTTATTCTCCTACGTTTTCGTTA-AGATTTTTTTTTCTT-AAACAAGAAACATGTCTAATATCTGTAAAAATACAAAGCTTTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71443176 352 -  99763055 TATATATGTGTGTCCGTGTGTGTGTATCTATGTTTTTCTCCATAGCTGTCTTCATTATCCAGCTTCTATGCAAGGTCTATGATTTTGGCCTATATTTTTCATCTTTGATTACAGTACAAAAATTACCAGTATTACCTTAACTGAGATACAGATCCTATAAAAATGGAAAATGCATAGCATGCTTGATGATTAATGAAGCAGACTATATTATCCAACATTCTAATAAGATAAAATA---ATCACAATGATTTCTCTTTTTTGGAAAAATGTTTCTCTTATTCTCCTACGTTTTCGTTA-AGA-TTTTTTTTCTT-AAACAAGAAACATGTCTAATATCTGTAAAAATACAAAGCTTTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       22470 352 -    281578 TATATATGTGTGTCCGTGTGTGTGTATCTATGTTTTTCTCCATAGCTGTCTTCATTATCCAGCTTCTATGCAAGGTCTATGATTTTGGCCTATATTTTTCATCTTTGATTACAGTACAAAAATTACCAGTATTACCTTAACTGAGATACAGATCCTATAAAAATGGAAAATGCATAGCATGCTTGATGATTAATGAAGCAGACTATATTATCCAACATTCTAATAAGATAAAAT----ATCACAATGATTTCTCTTTTTTGGAAAAATGTTTCTCTTATTCTCCTACGTTTTCGTTA-AGATTTTTTTTTCTT-AAACAAGAAACATGTCTAATATCTGTAAAAACACAAAGCTTTTG
i gorGor5.CYUI01000141v1    C 0 C 0
s rheMac8.chr7               8439488 350 + 169600520 TATAtgtgtgtgtccgtgtgtgtg----tatgtATTCCTCCAGAGCTGTCTTCATTATCCAGCTTCTATGCAAGGTCTTTGATTTTGGTCTGTATTTTTCACCTTCAAATACAGTACAAAAATTACCAGTATTACCTTAACTGAGTTACAGAGCCTATAAAAATGGAAAATCTATAGCGTGCTTGATGGTTAATGAAGCAGACTATATTATCCAACATTCTAATAAGATAAGATA---ACCACAATGATTTCTCTTTTTTGGAAAAACATTTCTTTTATTCTCTTATGTTATTGTTACAAATTTTTTTTTGTT-AAACAAGAAACAAGTCTAATATCTGTAGAAACACAAAGCTTTTG
i rheMac8.chr7              C 0 N 0
s macNem1.NW_012017799v1      419435 345 -   9617498 TATATACGTGCGTCTGTGTGTGTGTATCTATGTGTTCTTCCAGAGCTATCTTCATTATCCAGCTTCTATGCAAGATCTGTGATTGTGGCCTGTATTTTTCATCTTCAAACACAGTACAAAAATTACCAGTATTACCATAACTGAGATACAGATCCTATAAAAATGGAAAATCCATAGCATGCTTGATGATTAATGAAGCAGACTATATTATCCAACATTCCAATAAGATAA---A---ATCACAATAGTTTCTCTCTTTTGGAAAAACGTGTCTCTTATTCTCCTACGTTATTA----AGATTTTTTTTTCTT-GAACAATAAAT--GTCTAATATCTGTAACAACACAAAGCTTTTG
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4972098 348 +  14009840 TATATAGGTGCGTCTGTGTGTGTGTATCTATGTCTTCCTCCAGAGCAGTCTTCATTATCTAGCTTCTATGCAATATCTATGATTGTGGCCTGTATTTTTCATCTTCAAACACAGTACAAAAATTACCAGTATTACCATAACTGAGATACAGATCCTATAAAAATGGAAAATCCATAGCATGCTTGATGTTTAATGAAGCAGACTATATTATCCAACATTCCAATAAGATAA---A---ATCACAATAGTTTCTCTTTTTTGGAAAAATGTGTCTCTTATTCTCCTACATTATTGTTA-AGATTTTTTTTTCTT-GAACAATAAAC--GTCTAATATCTGTAACAACACAAAGCTTTTG
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7591752 347 +  58131712 TATATTTGTGTGTCAGTGTGTGTGTGCCTACGTGTTCCTCCAGAGCTGTCTTCATTATCCAGCTTCTATGCATGGTCTATGATTTTGGCCTACATTATTCATCTTCAGATGGAGTACAGGAATTACATGTATTATCTCTATTGAGACACAAATTCTATAAAAATGTAAAATTCATAGTATGTCTGATGATTAATGAAGCAGACTATATTATCCAACCTTCCAATAAGATAA---AATCATCACAAGCAATTCTCTCTTTTGGAAAAACATTTCTCTTATTCTCCTACATTA---TTA-AGATTTTTCT---TA-AAGCAAGAAACATGTCTAATATCTTTAAAAACACAAAGCTTTTG
i chlSab2.chr26             I 4247 C 0
s manLeu1.NW_012109919v1      127706 348 +   7069685 TATATAGGTGCGTCTGTGTGTGTGTATCTATGTGTTCCTCCAGAGCAGTCTTCATTATCTAGCTTCTACGCAAGATCTATGATTGTGGCCTGTATTTTTCATCTTCAAACACAGTACAAAAATTACCAGTATTACCATAACTGAGATACAGATCCTATAAAAATGGAAAATCCATAGCATGCTTGATGTTTAATGAAGCAGACTATATTATCCAACATTCCAATAAGATAA---A---ATCACAATAGTTTCTCTTTTTTGGAAAAATGTGTCTCTTATTCTCCTACATTATTGTTA-AGATTTTTTTTTCTT-GAACAATAAAC--GTCTAATATCTGTAACAACACAAAGCTTTTG
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3046875 346 +   3749464 ----tatgtgtgtctgtgtgtgtg----tatgtATTCCTCCAGAGCTGTCTTCATTATCCAGATTCTATGCAAGGTCTTTGATTTTGATCTGTATTTTTCATCTTCAAATACAGTACAAAAATTACCAGTATTGCCTTAACTGAGATACAGAGCCTATAAAAATGGAAAATCTATAGCATGCTTGATGGTTAATGAAGCAGACTATATTATCCAACATTCCAATAAGATAAGATA---ATCACAATGATTTCTCTTTTTTGGAAAAACATTTCTTTTATTCTCTTACGTTATTGTTA-CGATTTTTTTTTTTTAAAACAAGAAACAAGTCTAATATCTGTAAAAGCACAAAGCTTTTG
i colAng1.NW_012115677v1    C 0 C 0

a score=48409.000000
s hg38.chr15_KI270851v1_alt   262824 19 +   263054 ggccgggtgcagtggctca
s panTro5.chr15             72206747 19 - 83230942 ggccgggtgcagtggctca
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71443528 19 - 99763055 ggccgggtgcagtggctca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       22822 19 -   281578 ggccgggtgcagtggctca
i gorGor5.CYUI01000141v1    C 0 C 0
s macNem1.NW_012017799v1      419780 19 -  9617498 Agccgggtgcagtggctca
i macNem1.NW_012017799v1    C 0 C 0
s cerAty1.NW_012001627v1     4972446 19 + 14009840 ggccgggtgcagtggctgg
i cerAty1.NW_012001627v1    C 0 C 0
s chlSab2.chr26              7592099 19 + 58131712 GGTCAGGAGCAgtggttca
i chlSab2.chr26             C 0 N 0
s manLeu1.NW_012109919v1      128054 19 +  7069685 Agccgggtgcagtggcagg
i manLeu1.NW_012109919v1    C 0 C 0
s colAng1.NW_012115677v1     3047221 19 +  3749464 Tgctgggtgcagtgcttca
i colAng1.NW_012115677v1    C 0 C 0

a score=248887.000000
s hg38.chr15_KI270851v1_alt   262843 112 +   263054 tgcctgtaattccaggactttgagagcccaaggtgggtggatcat--gacgtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaa
s panTro5.chr15             72206766 112 - 83230942 tgcctgtaattccaggactttgagagcccaaggtgggtggatcat--gaggtcaggagatcgagaccatcctggctaacacggtgaaatcccatctctactaaaaatacaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15             71443547 112 - 99763055 tgcctgtaattccaggactttgagagcccaaggtgggtggatcat--gaggtcaggagatcgagaccatcctggctaacacggtgaaatcccatctctactaaaaatacaaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000141v1       22841 111 -   281578 tgcctgtaattccaggactttgagagcccaaggtgggtggatcat--gaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatcccta-taaaaatacaaaaa
i gorGor5.CYUI01000141v1    C 0 C 0
s macNem1.NW_012017799v1      419799 114 -  9617498 tgcctataatcccagcacttcgggagcccaaggcgggtggatcacctgaggtcaggagttcaagaccatcctggccaacatggtgaaaccccatatctactaaaaatacaaaaa
i macNem1.NW_012017799v1    C 0 I 1
s cerAty1.NW_012001627v1     4972465 114 + 14009840 cgcctgtaatcccagcactttgggagcccaaggcgggtggatcacctgaggtcaggagttcaagaccatcctggccaacatggtgaaaccccatatctactaaaaatacaaaaa
i cerAty1.NW_012001627v1    C 0 N 0
s manLeu1.NW_012109919v1      128073 114 +  7069685 cgcctgtaatcccagcactttgggagcccaaggcgggtggatcacctgaggtcaggagttcaagaccattctggccaacatggtgaaaccccatatctactaaaaatacaaaaa
i manLeu1.NW_012109919v1    C 0 N 0
s colAng1.NW_012115677v1     3047240 112 +  3749464 cgcctgtaatcccagcactttgggagcccgatgtgggtggatcac--gaggtcaagaaatcgagaccattctggctaacatggtgaaatcctgtctctattaaaaatacaaaaa
i colAng1.NW_012115677v1    C 0 I 2

a score=113570.000000
s hg38.chr15_KI270851v1_alt   262955 99 +   263054 aggccggatgtggtggcaggcagctgtagtctcagctacttgggaggctgaggcaggagaatgacatgaacccccgaggtggagcttgcagtgagccaa
s panTro5.chr15             72206878 99 - 83230942 aggccggatgtggtggcaggcaactgtagtctcagctacttgggaggctgaggcaggagaatgacatgaacccccgaggtggagcttgcagtgagccaa
i panTro5.chr15             C 0 N 0
s panPan2.chr15             71443659 99 - 99763055 aggccggatgtggtggcaggcaactgtagtctcagctacttgggaggctgaggcaggagaatgacatgaacccccgaggtggagcttgcagtgagccaa
i panPan2.chr15             C 0 N 0
s gorGor5.CYUI01000141v1       22952 98 -   281578 aggccggatgtgg-ggcaggcagctgtagtctcagctacttgggaggctgaggcaggagaatgacatgaacccccgaggtggagcttgcagtgagccaa
i gorGor5.CYUI01000141v1    C 0 N 0
s macNem1.NW_012017799v1      419914 99 -  9617498 tagccaggcatggtagtgggtgcctgtaatcccagctatttcggaggctgaggcaagagaatcacttgaacccaggagacggaggttgcagtgagccaa
i macNem1.NW_012017799v1    I 1 N 0
s colAng1.NW_012115677v1     3047354 99 +  3749464 tagccaggcgtggtggcgggcacctgtagtcccagctacttgggaggcagaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagccaa
i colAng1.NW_012115677v1    I 2 N 0

