##maf version=1 scoring=roast.v3.3
a score=9100.000000
s hg38.chr17_JH159148v1_alt        0 1 +     88070 c
s panTro5.chr17             16322181 1 +  83181570 c
i panTro5.chr17             N 0 C 0
s panPan2.chr17             16227056 1 +  83442489 c
i panPan2.chr17             N 0 C 0
s gorGor5.CYUI01015385v1     4062193 1 +   4267968 c
i gorGor5.CYUI01015385v1    N 0 C 0
s nomLeu3.chrUn_GL397460_1   2042455 1 -   2193130 c
i nomLeu3.chrUn_GL397460_1  N 0 C 0
s rheMac8.chr16             30116488 1 -  77216781 c
i rheMac8.chr16             N 0 C 0
s macFas5.chr16             28029350 1 -  80997621 c
i macFas5.chr16             N 0 C 0
s macNem1.NW_012014910v1     2085595 1 +  10377808 c
i macNem1.NW_012014910v1    N 0 C 0
s cerAty1.NW_012006043v1     1971353 1 -   8458610 c
i cerAty1.NW_012006043v1    N 0 C 0
s chlSab2.chr16             64915592 1 +  75148670 c
i chlSab2.chr16             N 0 C 0
s colAng1.NW_012122154v1     2178651 1 +   4569836 c
i colAng1.NW_012122154v1    N 0 C 0
s calJac3.chr5              46134593 1 - 159171411 c
i calJac3.chr5              N 0 C 0
s saiBol1.JH378271           1844233 1 +   3513951 c
i saiBol1.JH378271          N 0 C 0
s otoGar3.GL873537          22837085 1 +  28711273 c
i otoGar3.GL873537          N 0 C 0

a score=61920.000000
s hg38.chr17_JH159148v1_alt        1 8 +     88070 aagaaact
s panTro5.chr17             16322182 8 +  83181570 aagaaact
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16227057 8 +  83442489 aagaaact
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4062194 8 +   4267968 aagaaact
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2042456 8 -   2193130 aagaagct
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30116489 8 -  77216781 aagaagct
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28029351 8 -  80997621 aagaagct
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2085596 8 +  10377808 aagaagct
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1971354 8 -   8458610 aagaagct
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64915593 8 +  75148670 aagaagct
i chlSab2.chr16             C 0 C 0
s colAng1.NW_012122154v1     2178652 8 +   4569836 aagaagcg
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46134594 8 - 159171411 aagaagct
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1844234 8 +   3513951 aagaagct
i saiBol1.JH378271          C 0 C 0
s otoGar3.GL873537          22837086 8 +  28711273 aaggagct
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            453430 8 -    852752 AAGGATAT
i dasNov3.JH570468          N 0 C 0

a score=77163.000000
s hg38.chr17_JH159148v1_alt        9 8 +     88070 cactctct
s panTro5.chr17             16322190 8 +  83181570 cactctct
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16227065 8 +  83442489 cactctct
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4062202 8 +   4267968 cactctct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2042464 8 -   2193130 cactctct
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30116497 8 -  77216781 cactctct
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28029359 8 -  80997621 cactctct
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2085604 8 +  10377808 cactctct
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1971362 8 -   8458610 cactctct
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64915601 8 +  75148670 cactctct
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2155670 8 +   4244037 cactctct
i manLeu1.NW_012106252v1    N 0 C 0
s colAng1.NW_012122154v1     2178660 8 +   4569836 cactcttt
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46134602 8 - 159171411 tactctct
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1844242 8 +   3513951 cactctct
i saiBol1.JH378271          C 0 C 0
s otoGar3.GL873537          22837094 8 +  28711273 cattctct
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            453438 8 -    852752 GATTTTTT
i dasNov3.JH570468          C 0 C 0

a score=186133.000000
s hg38.chr17_JH159148v1_alt       17 29 +     88070 ggtgggcag---------caagacaattatgacattcc
s panTro5.chr17             16322198 29 +  83181570 ggtgggcag---------caagacaattatgacattcc
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16227073 29 +  83442489 ggtgggcag---------caagacaattatgacattcc
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4062210 29 +   4267968 ggtgggcag---------caagacaattatgacattcc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2042472 29 -   2193130 ggtgggcag---------caagacaattatgacattcc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30116505 29 -  77216781 ggtgggcag---------caagacaattatgacattcc
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28029367 29 -  80997621 ggtgggcag---------caagacaattatgacattcc
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2085612 29 +  10377808 ggtgggcag---------caagacaattatgacattcc
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1971370 29 -   8458610 ggtgggcag---------caagacaattatgacattcc
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64915609 29 +  75148670 ggtgggcag---------caagacaattatgatattcc
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2155678 29 +   4244037 ggtgggcag---------caagacaattatgacattcc
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2178668 29 +   4569836 ggtgggcag---------caagacaattatgacattcc
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46134610  8 - 159171411 gatgagCT------------------------------
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1844250  8 +   3513951 ggtgagct------------------------------
i saiBol1.JH378271          C 0 C 0
s otoGar3.GL873537          22837102 38 +  28711273 ggtggagagacagacagactggacaattattacattcc
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              21450056 29 +  61074082 gataggcag---------agagacagtaactacattgc
i canFam3.chr9              N 0 C 0
s dasNov3.JH570468            453446 20 -    852752 ------------------GGTGGCAATTGTTACATTCC
i dasNov3.JH570468          C 0 C 0

a score=1218345.000000
s hg38.chr17_JH159148v1_alt       46  99 +     88070 tttgtgccaagtac----t----tggag---ataagcatagagc-accatgaactcagcagagcatagttggggaacaaggaaagaattatt-ggagaatgtgatactggca
s panTro5.chr17             16322227  99 +  83181570 tttgtgccaagtac----t----tggag---ataagcatagagc-accatgaactcagcagagcatagtgggggaacaaggaaagaattatt-ggagaatgtgatactggca
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16227102  99 +  83442489 tttgtgccaagtac----t----tggag---ataagcatagagc-accatgaactcagcagagcatagtgggggaacaaggaaagaattatt-ggagaatgtgatactggca
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4062239 100 +   4267968 tttgtgccaagtac----t----tggag---ataagcatagagc-accatgaactcagcagagcatagtgggggaacaaggaaagaattattgggagaatgtgatactggca
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2042501  99 -   2193130 tttgtgccaagtac----t----cagag---ataagcacagagc-accatgaactcagcagagcatggtgggggaacaaggaaagaattatt-ggagaatgtgatactggca
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30116534  99 -  77216781 tttgtgccaagtac----t----cggag---ataagcacagagc-accatgaaatcagcagagcgtggtgggggaacaaggaaagaattatt-ggagaatgtgatactggca
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28029396  99 -  80997621 tttgtgccaagtac----t----cggag---ataagcacagagc-accatgaaatcagcagagcgtggtgggggaacaaggaaagaattatt-ggagaatgtgatactggca
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2085641  99 +  10377808 tttgtgccaagtac----t----cggag---ataagcacagagc-accatgaactcagcagagcgtggtgggggaacaaggaaagaattatt-ggagaatgtgatactggca
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1971399  99 -   8458610 tttgtgccaagtac----t----cggag---ataagcacagagc-accatgaactcagcagagcatggtgggggaacaaggaaagaattatt-ggagaatgtgatactggca
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64915638  99 +  75148670 tttgtgccaagtac----t----cggag---ataagcacagagc-accatgaactcagtaaagcgtggtggggaaacaaggaaagaattatt-ggagaatgtgatactggca
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2155707  99 +   4244037 tttgtgccaagtac----t----cggag---ataagcacagagc-accatgaactcagcagaacgtggtgggggaacaaggaaagaattatt-ggagaatgtgatactggca
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2178697  99 +   4569836 tttgtgccaagtac----t----cagag---ataagcacagagc-actatgaactcagcagagtgtggtgggggaacaaggaaagaattatt-ggagaatgtgatactggca
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46134618 100 - 159171411 TTTGTGCCGAGCAC----T----TGGAG---ATAAACACAGAGCACCCATGAACTCAGCAGAGTGTGGtgggggaacaaggaaataattctt-ggagaatgtgatactggca
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1844258  99 +   3513951 tttgtgcagagtac----t----tggag---ataagcacagagc-cccatgaactcagcagagtatggtgggggaacaaggaaagaattctt-ggagaatgtgatactggca
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1893008 102 +   1920343 TTTGTGCCGAGTAC----T----TGGAGGTCATAAGCACAGAGC-ACCATGAACTCAGCAGAGTGTGGtgggggaacaaggaaagaattctt-ggagaatgtgatgctggca
i cebCap1.NW_016107730v1    N 0 C 0
s aotNan1.NW_018502359v1     7009347  99 -   7032639 tttgtgccgagtac----t----tggag---ataagcacagagg-accatgaactcagcagagtgtggtgggtgaacaaggaaagaattctt-ggagaatgtgatactggca
i aotNan1.NW_018502359v1    N 0 C 0
s otoGar3.GL873537          22837140 100 +  28711273 catgtgctaagcaccaggt----aagag---gtaagcatagggc-accatgaactcagcagggtgtag-gtaggaaccaggaaagaat--ct-tgtgaatgtgattctggag
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              21450085 101 +  61074082 cttgtgttaagtac----tgggacagag---gcaagcatagggc-agtttgaactgagcagggcatg--tggagaaatggggaagaattctt-ggggaatgtgatactgaag
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            453466  99 -    852752 ATTatggtaagtat----tggaatagag---gtaagcacagagt-accatgaactcaggagggcatag---gggaacca-gaaagaattctt-ggggaatatgattgatgca
i dasNov3.JH570468          C 0 C 0

a score=5166222.000000
s hg38.chr17_JH159148v1_alt      145 419 +     88070 ----tcgagtctttcagtatgagtaggaattaaccagttacaaacaggaaaggaaaaactttctaggcaaaggagacttgtacaagtgaatggggcttgaggGCAAATTGTTCATTAGGTGAGGCATGGG-AGAGTTGTTCTTTGAGGA---A---TGAGCCATGAGGTCAGGT-CGTAGACAGTGATC-----TGTCTATGTGGGGTCTTGCATGCTAGACAGAGGTATTTCGGTTTGATGCAGGGCTGACATGAAAGCATCAAGGGGCTGCATGCAA---GGAGGTGACAGGAAGAGCACTGG-TTTTGGAACATCCCTCTGGCCTTGGTTGGTGTGGAG-AACTCAATGGAAGAACATGGTTCTGGATATAGAGAGACTGGGGAGGAAAGGAAGCCAATTGTTTTTG-GGTCCACA--GGA---AGAAAAACAAGTGGGGATCA
s panTro5.chr17             16322326 420 +  83181570 ----tcgagtctttcagtatgagtaggaattaaccagttacaaacaggaaaggaaaaactttctaggcaaaggagacatgtacaaGTGAATGGGGCTTGAGAGCAAATTGTTCATTAGGTGAGGCATGGG-AGAGTTGTTCTTTGAGGA---A---TGAGCCATGAGGTCAGGT-CGTAGACAGTGATC-----TGTCTATGTTGGGTCTTGCATGCTAGACAGAGGTGTTTCGGTTTGATGCAGGGCTGACACGAAAGCATCAAGGGGCTGCATGCAG---GGAGGTGACAGGAAGAGCACTGGGTTTTGGAACATCCCTCTGGCCTTGGTTGGTGTGGAG-AACTCAATGGAAGAACATGGTTCTGGATATAGAGAGACTGGGGAGGAAAGGAAGCCAATTGTTTTTG-GGTCCACA--GGA---AGAAAAACAAGTGGGGATCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16227201 420 +  83442489 ----tcgagtctttcagtatgagtaggaattaaccagttacaaacaggaaaggaaaaactttctaggcaaaggagacatgtacaaGTGAATGGGGCTTGAGAGCAAATTGTTCATTAGGTGAGGCATGGG-AGAGTTGTTCTTTGAGGA---A---TGAGCCATGAGGTCAGGT-CGTAGACAGTGATC-----TGTCTATGTTGGGTCTTGCATGCTAGACAGAGGTGTTTCGGTTTGATGCAGGGCTGACACGAAAGCATCAAGGGGCTGCATGCAG---GGAGGTGACAGGAAGAGCACTGGGTTTTGGAACATCCCTCTGGCCTTGGTTGGTGTGGAG-AACTCAATGGAAGAACATGGTTCTGGATATAGAGAGACTGGGGAGGAAAGGAAGCCAATTGTTTTTG-GGTCCACA--GGA---AGAAAAACAAGTGGGGATCA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4062339 421 +   4267968 ----tcgagtctttcagtatgagtaggaattaaccagttacaaacaggaaaggaaaaactttctaggcaaaggagacatgtacaaGTGAATGGGGCTTGAGAGCAAATTGTTCATTAGGTGAGGCATGGG-AGAGTTGTTCTTTGAGGA---A---TAAGCCATGAGGTCAGGT-CGTAGACAGTGATC-----TGTCTATGTTGGGTCTTGCATGCTAGACAGAGGTGTTTCGGTTTGATGCAGGGCTGACACGAAAGCATCAAGGGGCTGCATGCAG---GGAGGTGACAGGAAGAGCACTGGGTTTTGGAACATCCCTCTGGCCTTGGTTGGTGTGGAGAAACTCAATGGAAGAACATGGTTCTGGATATAGAGAGACTGGGGAGGAAAGGAAGCCAGTTGTTTTTG-GGTCCACA--GGA---AGAAAAACAAGTGGGGATCA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2042600 423 -   2193130 ----tcgagcctttcagtacgagtaggaattaactagttacaaacaggaaaggaaaagctttctaggcaaaggagacatgtacaagtgaacggggCTTGAGAGCAAATTGTTCATTAGGCGAGGCATGGG-AGAGTTGTTCTTCAAGGA---A---TGAGGCATGAGGTCAGAT-CGTAGACAGTGATCGTAGACAATGATGTTGGGACTGGCATGCTAGACAGAGGTGTTTGGGTTTGATGCAGGGCTGACATGAAGGCATCAGGGGGCTGCATGCAG---AGAGGTAACAGGAAGAGCACTGGGTTTTGGAACATCCCTCTGGTC----TTGGTGTGGAG-AACCCAATGGAAGAGCATGGTTCTGGATATAGAGAGGCTGGGGAGGAAAGGAAGCCAATTGTTTTTG-GGTCCACAGTGGA---AGAAAAACAAGTGGGGATCA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30116633 419 -  77216781 ----tcgagtctttcagtacgagcatgaatcaaccagctacaaacaggaaaggaaaagttttctaggcaaaggagacatgtacaaGTGAATGGGGCTTGAGAGCAAATTGTTCATTAGGTGAGGCGTGGGCAGAGTTGTTCTTTGAGGA---A---TGAGCCACGAGGTCAGAT-TGTAGACAGTGATC-----TGTCTATGTTGGGCCTTGCATGCTAGACAGAGGTGTTTGGGTTTGTTGCAGGGCTGACATGAAGGCATCAAGGGGCTGCATGCAG---GGAGGTGACAGGAAGAGCACTGGGTTTTAGAACATTCCTCTGGCC----TTGGTGTGGAG-AACTCAATGGAAGAACATGGTTCTGGATATAGAGAGGCCGGGGAGGAAAGAAAGTCAATTGTTTTTG-GGTCCACAGTGGA---AGAAAAATAAGTGGAGATCA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28029495 419 -  80997621 ----tcgagtctttcagtacgagcatgaatcaaccagctacaaacaggaaaggaaaagttttctaggcaaaggagacatgtacaaGTGAATGGGGCTTGAGAGCAAATTGTTCATTAGGTGAGGCATGGGCAGAGTTGTTCTTTGAGGA---A---TGAGCCACGAGGTCAGAT-TGTAGACAGTGATC-----TGTCTATGTTGGGCCTTGCATGCTAGACAGAGGTGTTTGGGTTTGTTGCAGGGCTGACATGAAGGCATCAAGGGGCTGCATGCAG---GGAGGTGACAGGAAGAGCACTGGGTTTTGGAACATTCCTCTGGCC----TTGGTGTGGAG-AACTCAATGGAAGAACATGGTTCTGGATATAGAGAGGCCAGGGAGGAAAGGAAGCCAATTGTTTTTG-GGTCCACAGTGGA---AGAAAAATAAGTGGAGATCA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2085740 419 +  10377808 ----tcgagtctttcagtacgagcatgaatcaaccagctacaaacaggaaaggaaaagttttctaggcaaaggagacatgtacaaGTGAATGGGGCTTGAGAGCAAATTGTTCATTAGGTGAGGCGTGGGCAGAGTTGTTCTTTGAGGA---A---TGAGCCACGAGGTCAGAT-TGTAGACAGTGATC-----TGTCTATGTTGGGCCTTGCATGCTAGACAGAGGTGTTTGGGTTTGTTGCAGGGCTGACATGAAGGCATCAAGGGGCTGCATGCAG---GGAGGTGACAGGAAGAGCACTGGGTTTTGGAACATTCCTCTGGCC----TTGGTGTGGAG-AACTCAATGGAAGAACATGGTTCTGGATATAGAGAGGCCAGGGAGGAAAGGAAGCCAATTGTTTTTG-GGTCCACAGTGGA---AGAAAAATAAGTGGAGATCA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1971498 419 -   8458610 ----tcgtgtctttcagtacgagcatgaatcaaccagctacaaacaggaaaggaaaagttttctaggcaaaggagacatgtacaaGTGAATGGGGCTTGAGAGCAAATTGTTCATTAGGTGAGGCGTGGGCAGAGTTGTTCTTTGAGGA---A---TGAGCCACGAGGTCAGAT-TGTAGACAGTGATC-----TGTCTATGTTGGGCCTTGCATGCTAGACAGAGGTGTTTGGGTTTGTTGCAGGGCTGACATGAAGGCATCAAGGGGCTGCATGCAG---GGAGGTGACAGGAAGAGCACTGGGTTTTGGAACATTCCTCTGGCC----TTGGTGTGGAG-AACTCAATGGAAGAACATGGTTCTGGATATAGAGAGGCCAGGGAGGAAAGGAAGCCAATTGTTTTTG-GGTCCACAGTGGA---AGAAAAATCAGTGGAGATCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64915737 419 +  75148670 ----tcgagtctttcagtatgagcaggaatcaaccagctacaaataggaaaggagaagttttctaggcaaaggagacaTGTACGAGTGAATAGGGCTTGAGAGTAAATTGTTCATTAGGTGAGGCGTGGACAGAGTTGTTCTTAGAGGA---A---TGAGCCACGAGGTCAGGT-TGTAGACAGTGATC-----TGTCTATGTTGGGCCTTGCATGCTAGACAGAGGTGTCTGGGTTTGATGCAGGGCTGACATGAAGGCATCAAGGGGCTGCATGCAG---GGAGGTGACAGGAAGGGCACCAGGTTTTGGAACATCCCTCTGGCC----TTGGTGTGGAG-AACTCAATGGAAGAACATGGTTCTGGATATAGAGAGGCTGGGGAGGAAAGGAAGCCAATTTTTTTTG-GGTCCACAGTGGA---AGAAAAATAAGTGGAGATCA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2155806 419 +   4244037 ----tcgagtctttcagtacgagcatgaatcaaccagctacaaacaggaaaggaaaagttttctaggcaaaggagacatgtacaaGTGAATGGGGCTTGAGAGCAAATTGTTCATTAGGTGAGGCGTAGGCAGAGTTGTTCTTTGAGGA---A---TGAGCCACGAGGTCAGAT-TGTAGACAGTGATC-----TGTCTATGTTGGGCCTTGCATGCTAGACAGAGGTGTTTGGGTTTGTTGCAGGGCTGACATGAAGGCATCAGGGGGCTGCATGCAG---GGAGGTGACAGGAAGAGCACTGGGTTTTGGAACATTCCTCTGGCC----TTGGTGTGGAG-AACTCAATGGAAGAACATGGTTCTGGATATAGAGAGGCCAGGGAGGAAAGGAAGCCAATTGTTTTTG-GGTCCACAGTGGA---AGAAAAATCAGTGGAGATCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2178796 418 +   4569836 ----tcgagtctttcagtacgagcaggaattaaccagctacaaacaggaaaggaaaagttttctaggtaaaggagacacgtataagtgaacagggcttgagagcaAATTGTTCATTAGGTGAGGCGTGGGCAGAGTTGTTCTTCGAGGA---A---TGAGCCACGAGGTCAGAT-TGTAGACAGTGATC-----TG-CTATGTTGGGCCTTGCATGCTAGACAGAGGTGTTTGGGTTTGATGCAGGGCTGACATGAAGGCATCAAGGGGCTGCATGCAG---GGAGGTGACAAGAAGAGCACTGGGTTTTGGAACATCCCTCTGGCC----TTGGTGTGGAG-AACTCAATGGAAGAACATGGTTCTGGATATAGAGAGGCTGGGGAGGAAAGGAAGCCAGTTGTTTTTG-GGTCCACAGTGGA---AGAAAAATAAGTGGACATCA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46134718 418 - 159171411 ----ttgagtcttcccatatgagtaggaattaaccagttacaaacaggaaagcaaaagctttctaggcaaaggagacatgtacaagtgaatggggcttgagAGCAAATTTTTCATGAGGTGAGGCATGGACAGACTCGTTCTTAGAGGA---A---TGAGCCATGAGATCAGAT-TGTACATGGGGATC-----TGCCTGTGTTGGGCCTTGCATACTAGACAGAGGTATTCGGGTTTGATGCAGGGCTGACATGAAGGCATCAAGGGGCTGCATGCAGGGGGGAAGTGACAGGAAGAGCACTGGGTTTTGGAAGGTCCCTCTGGCC----TTGGTGTGGAG-AATTCAATGGAAGAACATGGTTCTGGAGATAGAGAGACTGGGGAAGACAGGAAGCCAATCGTTTTGC-CGTCCACAGTGGA---AGAAAAACAAGAAGTG----
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1844357 418 +   3513951 ----tcaagtcttcccatatgagtaggaattaaccagttacaaacaggaaagcaaaagcttcctaggcaaaggagacatgtacaagtgaatagggcttgagAGCAAATTGTTCATGAGGTGAGGCGTGGACAGAGTCGTTCTTAGAGGA---A---TGAGCCATGCGGTCAGAT-CGTAGACAGTGATC-----TGCCTGTGTTGGGCCTTGCATGCTAGACAGAGGTGTCTGGGTTTGATGCAGGGCTGACATGAAGGCTTCAAGAGGCTGCATGCAGGGTGGAAGTGACAGGAAGAGCACTGGGTTTTGGAAGGTCCCTCTGGCC----TTGGTGTGGAG-AATTCAATTGAAGAACATGGTTCTGGAGATAGAGAGACTGGGGAAGACATGAAGCCGATCGTTTTGC-GGTCCACAGTGGA---AGAAAAACAAGAAGTG----
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1893110 418 +   1920343 ----tcgagtcttcccatatgagtaggaattaaccagttacaaacaggaaagcaaaagctttctaggcagaggagacatgtacaagtgaatggggcttgagAGCAGATTGTTCATGAGGTGAGGCATACACAGAGTCATTCTTAGAGGA---A---TGAGCCATGAGGTCAGAT-CATGGACAGTGGGC-----TGCCTGTGTTGGGCCTTGCATGCTAGACAGAGGTGTTTGGGCTTGATGCAGGGCTGACATGAAGGCATCAAGGGGCTGCATGCAGAGCGGAAGTGACAGGAAGAGCACTGGGTTTTGGAAGGTCCCTCTGGCC----TTGGTGTGGAG-AATTCAATTGAAGAACATGGTTCTGGAGATAGACAGACTGGGGAAGACAGGAAGCCAATTGTTTTGT-GGTCCACAGTGGA---AGAAGAACAAGAAGTG----
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7009446 418 -   7032639 ----tcgagtcttcccatatgagtaggaattaaccagttacaaacaggaaagcaaaagctttctaggcaaaggagacacgtacaagtaaatggggcttgagagcaAATTGTTCACGAGGTGAGGCGTAGACAGAGTCGTTCTTAGACGA---A---TGAGCCATGAGGTCAGAT-CGTAGACAGTGATC-----TGCCTGTGTTGGGCCTTGCATGCTAGACAGAGGTGTTTGGGTTTGATGCAGGGCTGACAGGAAGGCATCAAGGGGCTGCATGCAGGGGGGAAGTGACAGGAAGAGCACTGGGTTTTGGAAGGTCCCTCTGGCC----TTGGTGTGGAG-AACTCAACTGAAGAACGTGGTTCTGGAGATAGAGAGACAGGGGAAGACAGGAAGCCAATCGTTTTGC-GGTCCACAGTGGA---AGAAAAACAAGAAATG----
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22837240 410 +  28711273 ----ctgattctttcagcac-agtaggatttaaccatttacaaatagggaaggaagaactttctaggcagagggaacatgaacaaatgagtgaggcttgagagcaaactgttcattaggcaaggcttgagcagagttgcccttagaggattgg---tgggccccaaggtcaaag-agTAGACAGTGACC-----TGCTCAAGTTGGGCCTTACACGCTGGACAGATGGGTTTGCATCTCAGGCAGGGCTGGCACAAAAGCACTAAGGGGCTGTAT--AG---GGCAGTGATGTGAGGAGCACTGGGTGTTGGAACATCCCTCTGGCG----TTGGTGTGGAG-AACTCAGTGGAGGGATATGGTCTTGGATAGAGAGAGACCGGG-----AAGGAAGCCAATGGCTTTGA-GGTCCACAGTGGG---ATGAAAACAGCAAGAG----
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22098944 387 - 122082543 ----TCCAATCCTTTGGTACAAGTAAGAATTAACCAGGT------------------GCTCTCTAGGAAGGAGATTTACAGACAGATGAGCAGGGC-TGGGAGCCAACTGTCCACTAGGTGATGCTTGGGCAGAGGTGTCCTTAGAGGG---AAGGTGAGCCCTGACAGTGGGT-AGCAGGCAATGTTC-----TTCCCACAGAGGGCCTTGTGTGCTAGATAGATG---CTTGGTTTGGTGAAAAGCTTATGTGAAGTCCT-GAGGGGCTATTTGCAG---GGCAGGGTCGTGAAG-GAAATGGGTTTTGAAAAGTCTCTCTGGCC----TTGACATGGAA-AATTCAATGGGAAGACATGGGCCTGGATGTAGAGAAAT-------GGAAGGAAACAAATGTCTCTGGAGGTCAACGATGAA-TGAGAACAACAAATG-------
i mm10.chr11                N 0 C 0
s canFam3.chr9              21450186 411 +  61074082 ----ctgagtctttcagcacaaacaagaactaaccagtt-caaaccagaaaggaagagatttccaggcagaggaaacaT--ACAAATGAATGGGGCTTGTGAGCAGACCATTCATTA-GTGAGGCTTGGGTGGAAGTGTGCTTAGAGGG---A-GGTGAGCTCTGGGGTCAGTTAAATAGACAGTGATC-----TGCCCTTGGCGGGGTTTATAAGCTAGACAGAAGCATTTTAA--TGGTACAGGGCTGACATGAAGGTATCGAGGGGCCAAATGCAG---GGCAGTTACAAGAAGAGCAATGGGTTTTGGAATGGTCATCTGGCC----TTGGTGTGGAG-AACTGAATGAAGGAGCATGAACTTGGATATAGGGAGACTGGGG-----AGCAAGCCCATGGCTTTGG-GGTTCACAGTGGG---ATGAAAACAACTGGGGGTCA
i canFam3.chr9              C 0 I 132
s dasNov3.JH570468            453565 389 -    852752 ttagctgagttgttcaggacaagtaggaattaactagttaaaaacagggagggaagagatttccaggtagaagaaacatgtacaaacgaatggaacttgtaaggaaactgttcattaggtgagacttggacataggtgtctgtggagga---gtggtgagccatgaagttagagaagaggacagtgacc-----tgctcatgACAGGCCTTGCATGTGAGAAAGGGGTATTTGTTTTTGGTATGGGGCTGACGTGAAGACTCTGAAGGGCTG-------------------------------GGCTTTGTAAATGTCTCTCTGGCA----TTGGTGTGGAG-GACTGAAT-GAGGGACATGGTCCTGGAT------AGACTGGG-----TAGGAGGCCAGTGGCT-GGG-GGTCCACAGTGGGATGAAAACAACAAATGGGAATCA
i dasNov3.JH570468          C 0 C 0

a score=534153.000000
s hg38.chr17_JH159148v1_alt      564 49 +     88070 GGGATCATACTTACAACAAAGAAGGT-TGGGTAACTTGGATTTCTTGTGT
s panTro5.chr17             16322746 49 +  83181570 GGGATCATACTTACAGCAAAGAAGGT-TGGGTAACTTGGATTTCTTGTGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16227621 49 +  83442489 GGGATCATACTTACAGCAAAGAAGGT-TGGGTAACTTGGATTTCTTGTGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4062760 49 +   4267968 GGGATCATACTTACAACAAAGAAGGT-TGGGTAACTTGGATTTCTTGTGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2043023 49 -   2193130 GGGATCATACTTACAACAAAGAAGGT-TGGGTAACTTGGATTTCTTGTGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30117052 49 -  77216781 GAGATCATACTTACAGCAGAGAAGGT-TGGGTAACTTGGATTTCTTGTGT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28029914 49 -  80997621 GAGATCATACTTACAGCAGAGAAGGT-TGGGTAACTTGGATTTCTTGTGT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2086159 49 +  10377808 GAGATCATACTTACAGCAGAGAAGGT-TGGGTAACTTGGATTTCTTGTGT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1971917 49 -   8458610 GAGATCATACTTACAGCAGAGAAGGT-TGGGTAACTTGGATTTCTTGTGT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64916156 49 +  75148670 GAGATCATACTTACAGCAAAGAAGGT-TGGGTAACTTGGATTTCTTGTGT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2156225 49 +   4244037 GAGATCATACTTACAGCAGAGAAGGT-TGGGTAACTTGGATTTCTTGTGT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2179214 49 +   4569836 GAGATCATACTTTCAGCAAAGAAGGT-TGGGTAACCTGGATTTCTTGTGT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46135136 49 - 159171411 GGGATCATAATTACAACAAAGAAGAT-TGGGGAACTTGAATTTCTTGTGT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1844775 48 +   3513951 GGGATCATAATTGCAACAAAGAAGGT-TGGGGAAC-TGAATTTCTTGTGT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1893528 48 +   1920343 GGGATCATAATTACAACAAAGAAGGT-TGGGGAAC-TGAATTTCTTGTGT
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7009864 49 -   7032639 GGGATCATAATTACAACAAAGCAGGT-TGGGGAACTTGAATTTCTTGTGT
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22837650 48 +  28711273 GGGAGCACTCTCACAATAAGAAAGTTCTGGGTTACCTGGATTTCT--TAT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22099331 47 - 122082543 GGAGTCTTGCTTGTAGTA-AGGAGGT-TGGGCAATGGGGA-ATCTTGTAG
i mm10.chr11                C 0 C 0
s dasNov3.JH570468            453954 42 -    852752 -------TACTTACAATAAGGAAGATCCATGTAATCTGGAATT-TTGTGG
i dasNov3.JH570468          C 0 C 0
e canFam3.chr9              21450597 132 +  61074082 I

a score=2453533.000000
s hg38.chr17_JH159148v1_alt      613 208 +     88070 GAGAATTTTG---TTTATGTTCTCCTACTTCCTCCAA--GACA--CTCATAGGATAAATTCTGTA-------TCTTACAAAATCCAAGGACAGAGTCTCTTCAAAGCAGTCACTCCCTACACTTAGTGCACAGAATGGAGGCCTATTCCTTGTCCTCAAGGGGCAGCTTGAGTCATCATGAGCACAGTGTGAGGGTCGACcagggcttctcaacttcagcat
s panTro5.chr17             16322795 208 +  83181570 GAGAATTTTG---TTTATGTTCTCCTAGTTCCTCCAA--GACA--CTCATAGGATAAATTCCGTA-------TCTTACAATCTCCAAGGACAGAGTCTCTTCAAAGCAGTCACTCCCTACACTTAGTGCGCAGAATGGAGGCCTATTCCTTGTCCTCAAGGGGCAGCTTGAGTCATCATGAGCACAGTGTGAGGGTCGACcagggcttctcaacttcggcat
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16227670 208 +  83442489 GAGAATTTTG---TTTATGTTCTCCTAGTTCCTCCAA--GACA--CTCATAGGATAAATTCCGTA-------TCTTACAATCTCCAAGGACAGAGTCTCTTCAAAGCAGTCACTCCCTACACTTAGTGCGCAGAATGGAGGCCTATTCCTTGTCCTCAAGGGGCAGCTTGAGTCATCATGAGCACAGTGTGAGGGTCGACcagggcttctcaacttcggcat
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4062809 208 +   4267968 GAGAATTTTG---TTTATGTTCTCCTAGTTCCTCCAA--GACA--CTCATAGGATAAATTCCGTA-------TCTTACAATCTCCAAGGACAGAGTCTCTTCAAAGCAGTCACTCCCTACACTTAGTGCACAGAATGGAGGCCTATTCCTTGTCCTCAAGGGGCAGCTTGAGTCATCATGAGCACAGTGTGAGGGTCGACCAGGGCTTCTCAACTTCGGCAT
i gorGor5.CYUI01015385v1    C 0 I 440
s nomLeu3.chrUn_GL397460_1   2043072 208 -   2193130 GAGAATTTTG---TTTATGTTCTCCTAGCTCCTCCAA--GACA--CTCATAAGATAAATTCCATA-------TCTTACAATCTCCAAGGACAGAGTCTCTTCAAAGCAGTCACTCCCTACACTTAGTGCACAGAATGGAGGCCTATTCCTTGTGCTCAGGGTGCACCTTGAGTCATCATGAGCACAGTGTGAGGGTCGACcagggcttctcaacttcggcat
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30117101 208 -  77216781 GAGAATTTTG---TTTATGTTCTCCTAGTTCCCCCAA--GACA--CTCATAGGATAAATTCCATA-------TCTTACAATCTCCAAGGACAGAGTCTCTTCAAAGCAGTCACTCCCTACACTTACTGCACAGAATGGAGGCCTATTCCTTGTCCTCAAGGTGCAGGTTGAGTCATCAAGAGCACAGTGTGAGGGTCGACcagggcttttcaactccagtgt
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28029963 208 -  80997621 GAGAATTTTG---TTTATGTTCTCCTAGTTCCTCCAA--GACA--CTCATAGGATAAATTCCATA-------TCTTACAATCTCCAAGGACAGAGTCTCTTCAAAGCAGTCACTCCCTACACTTACTGCACAGAATGGAGGCCTATTCCTTGTCCTCAAGGTGCAGGTTGAGTCATCAAGAGCACAGTGTGAGGGTCGACcagggcttctcaactccagtgt
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2086208 208 +  10377808 GAGAATTTTG---TTTATGTTCTCCTAGTTCCTCCAA--GACA--CTCATAGGATAAATTCCATA-------TCTTACAATCTCCAAGGACAGAGTCTCTTCAAAGCAGTCACTCTCTATACTTAGTGCACAGAATGGAGGCCTATTCCTTGTCCTCAAGGTGCAGGTTGAATCATCAAGAGCACAGTGTGAGGGTCGACcagggcttctcaactccagtgt
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1971966 208 -   8458610 GAGAATTTTG---TTTAGGTTCTCCTAGTTTCTCCAA--GACA--CTCATAGGATAAATTCCATA-------TCTTACAATCTCCAAGGACAGAGTCTCTTCAAAGCAGTAACTCTTTATACTTAGTGCACAGAATGGAGGCCTATTCCTTGTCCTCAAGGTGCAGGTTGAGTCATCAAGAGCACAGTGTGAGGGTCGACcagggcttctcaactccagtgt
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64916205 208 +  75148670 GAGAATTTTG---TTTATGTTCTCCTAGTTCCTCCAA--GACA--CTCATAGGATAAATTCCATA-------TCTTACAATCTCCAAGGACAGAGTCTCTTCAAAGCAGTCACCCCCTACACTTACTGCACAGAATGGAGGCCTATTCCTTGTCCTCAAGGTGCAGGTTGAGTCATCAAGAGCACAGTGTGAGGGTCGACcagggcttctcaactccagcgt
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2156274 208 +   4244037 GAGAATTTTG---TTTATGTTCTCCTAGTTCCTCCAA--GACA--CTCATAGGATAAATTCCATA-------TCTTACAATCTCCAAGGACAGAGTCTCTTCAAAGCAGTCACTCTCTATACTTAGTGCACAGAATGGAGGCCTATTCCTTGTCCTCAAGGTGCAGGTTGAGTCATCAAGAGCACAGTGTGAGGGTCGACcagggcttctcaactccagcgt
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2179263 207 +   4569836 GAGAATTTTG---TTTATGTTCTCCTAGTTCCTCCAA--GACA--CTCATAGGATAAATTCCATA-------TCTTACAA-ATCCAAGGACAGAGTCTCTTCAAAGCAGTCACTCCCTACACTTAGTGCACAGAATGGAGGCCTATTCCTTGTCCTCAAGGTGCAGGTTGAGTCATCAAGAGCACAGTGTGAGGGCTGACcaggacttctcaactccagagt
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46135185 206 - 159171411 GAAAATTTTC---CTTATGTTCTCCTAGTTCCTACTA--GACA--CTC--GGGATAAATTCCATA-------TCTTACAATTGCCAAGGACAGAGTCTTTTCAAAACAGTCACTCCCTACACTTAGTTCACCGAATGGAGGCCTATTCCTTGTCCTGCAGGCGCAGCTTGAGTAATCACAAACACAGCGTAAGGGCAGATcagagcgtctccatttcggcct
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1844823 208 +   3513951 GAAAATTTTC---CTTATGTTCTCCTAGTTCCTACGA--GACA--CTCTTAGGATAAATTCCGTG-------TCTTATAATTGCCAAGGACAGAGTCTCTTCAAAACAGTCACTCCCTGCCCTTAGTTCACTGAATGGAGGCCTATTCCTTGTCCGGCAGGTGCAGCTTGAGTAATCACAAGCACAGTGTAAGGGCAGACcagggcttctccatttcggcct
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1893576 208 +   1920343 GAAAATTTTC---CTTATGTTTTCCTAGTTCCTACGA--GACA--CTCTTAGGATAAATTCCATG-------TCTTACAATTGCCAAGGACAGAGTCTCTTCAAAACAGCCACTCCCTGCACTTAGTTCACTGAATGGAGGCCTATTCCTTGTCCTGCGGGTGCAGCTTGAGTAATCACAGGCACAGTGTAAGGGAAGACcagggcttctccatttcggcct
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7009913 208 -   7032639 GAAAAATTTC---CTTATGTTCTCCTAGTTCCTACGA--GACA--CTCTTAGGATAAATTCCATA-------TCTTACAATTGCCAAGGACAGAGTCTCTTCAAAACAGTCACTCCCTACACTTAGTTCACTGAATGGAGGCCTATTCCTTGTCCTGCAGGTGCAGCTTGAGTAATCACAAGCACAGTGTAAGGGCAGACcagggcttctccatttcggcct
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22837698 196 +  28711273 GAGAATTTTC---CTTTTGTTCTCCTAGTTCCTTCCA--GACA------TGGTATGTATATCT---------CCTTATAACCTCCAAGGACAGAATCTCTC-----CAGTCACCTTTTGCACTTAGTACACAGAATGGAGGGCTG-CCCTTGTTCTCAAGGTACAGCTTGGGCCATCAGAAGCACAGAAAGGGGGCAGACcagggcttctagacttaggcac
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22099378 186 - 122082543 GAGAGTGTTG---TTT------TCTGAGCCCCAC--A--GACA--CTTGCTATCTAAACATTGCT-------TCCTACA--TCTGAAGCACATAAGCTCTT-----TAGTCAC-----ATCCTTACTTCACAGAATGAAGGG-TCTCTCCTGTCCTCCAGGTCTAACACGAACAATCATAACCACAGAA-GAGGATAGACTAGGGCTTCTCAGCTTTGTCAC
i mm10.chr11                C 0 C 0
s canFam3.chr9              21450729 205 +  61074082 AAGAGCCTTGTACTTTATGTTCTCCTAGTCTCTGCCATGAACA--CTCCTTGTGTAAACGCTATATA----CTCTTGCAATC-CTAAGGACAGAGTGTCTTCAAAGTAGTCGC---------TTAGTGCATGGCATGAAGGACTATTCCTTGTCCTCAAGATGCAGCTTGGGCTATCCTGAGCACAA-GAGGAGGTGACCcagagcttctcaactttagtgt
i canFam3.chr9              I 132 C 0
s dasNov3.JH570468            453996 209 -    852752 GAGG-----G---TTTATGTTCTCCCAGTCCATATAA--GACATATTCTTTCTATAAACTCCATTCATATCCTCTTAAAATCTCCAAGGGCAGGACATCTTCAAAGAAGTCACCCTCTACACTTAGTTCACAGAATGGAAGGTTATGCCTTGTCCTCAAGATGCAGCTTGGGTTATCACACGAAAAG--GAGAGGTAGACTAGTG-ttttcaaccttaactc
i dasNov3.JH570468          C 0 C 0

a score=64316.000000
s hg38.chr17_JH159148v1_alt      821 5 +     88070 tattg
s panTro5.chr17             16323003 5 +  83181570 tattg
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16227878 5 +  83442489 tattg
i panPan2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1   2043280 5 -   2193130 tattg
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30117309 5 -  77216781 tattg
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28030171 5 -  80997621 tattg
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2086416 5 +  10377808 tattg
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1972174 5 -   8458610 tattg
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64916413 5 +  75148670 tattg
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2156482 5 +   4244037 tattg
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2179470 5 +   4569836 tattg
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46135391 5 - 159171411 tattg
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1845031 5 +   3513951 tattg
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1893784 5 +   1920343 tattg
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7010121 5 -   7032639 tattg
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22837894 5 +  28711273 tgctg
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22099564 5 - 122082543 CACCG
i mm10.chr11                C 0 C 0
s canFam3.chr9              21450934 5 +  61074082 tgttg
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            454205 5 -    852752 tatta
i dasNov3.JH570468          C 0 C 0
e gorGor5.CYUI01015385v1     4063017 440 +   4267968 I

a score=2753085.000000
s hg38.chr17_JH159148v1_alt      826 216 +     88070 acattttgggctgggcgattctttgttgtaaaggctgtcctgtgaattataggatgttaagcagcatccctggcctctatgaaccagattctagtagcatcctttgag-ggtgatgatc-acaaatgtct----------ccagacattgccaaacattgcctgggagt-----gcaaaaatcacccctgtttgagaaccactgGGTCAGACTATGGCAGAGGGAGAAAGTCA
s panTro5.chr17             16323008 216 +  83181570 acattttgggctgggcgattctttgttgtaaaggctgtcctgtgaattataggatgttaagcagcatccctggcctctatgaaccagattctagtagcatcctttgag-ggtgatgatc-acaaatgtct----------ccagacattgccaaacattgcctgggagt-----gcaaaaatcacccctgtttgagaaccactgGGTCAGACTATGGCAGAGGGAGAAAGTCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16227883 216 +  83442489 acattttgggctgggcgattctttgttgtaaaggctgtcctgtgaattataggatgttaagcagcatccctggcctctatgaaccagattctagtagcatcctttgag-ggtgatgatc-acaaatgtct----------ccagacattgccaaacattgcctgggagt-----gcaaaaatcacccctgtttgagaaccactgGGTCAGACTATGGCAGAGGGAGAAAGTCA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4063457 215 +   4267968 acattttgggctgggcgattctttgttgtaaaggctgtcctgtgaattataggatgttaagcagcatccctggcctctaggaaccagattctagtagcatcctttgag-ggtgatgatc-acaaatgtct----------ccagacattgccaaacattgcctgggagt-----gcaaaaatcacccctgtttgagaaccactgGGTCAGACTATGGCATA-GGAGAAAGTCA
i gorGor5.CYUI01015385v1    I 440 C 0
s nomLeu3.chrUn_GL397460_1   2043285 226 -   2193130 acattttgggctgggtgattctttgttgtaaaggctgtcctatgaattgtaggatgttaagcagcatccctggcctctatgaaccagattctagtagcatcccttgag-ggtgatgatc-acaaatgtctccagacattgccagacattgccaaacattgcctgggagt-----gcaaaaatcaccactgtttgagaaccactgGGTCAGACTACAGCAGAGGGAGAAAGTCA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30117314 216 -  77216781 acattttgggctgggtgattctttgttgtaatggctgtcctgtgaattgtaggatgttaagcagcatcgctggcctctatgaaccagattctagtagcatcccttgag-ggtgatgatc-acaaatgtct----------ccagacattgtcaaacattgcctgggagt-----gcaaaaatcacccctgtttgagaatcactgGGTCAGACTATGGCAGAGGGAGAAAGTCA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28030176 216 -  80997621 acattttgggctgggtgattctttgttgtaatggctgtcctgtgaattgtaggatgttaagcagcatcgctggcctctatgaaccagattctagtagcatcccttgag-ggtgatgatc-acaaatgtct----------ccagacattgccaaacattgcctgggagt-----gcaaaaatcacccctgtttgagaatcactgGGTCAGACTATGGCAGAGGGAGAAAGTCA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2086421 216 +  10377808 acattttgggctgggtgattctttgttgtaatggctgtcctgtgaattgtaggatgttaagcagcatcgctggcctctatgaaccagattctagtagcatcccttgag-ggtgatgatc-acaaatgtct----------ccagacattgctaaacattgcctgggagt-----gcaaaaatcatccctgtttgagaatcactgGGTCAGACTATGGCAGAGGGAGAAAGTCA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1972179 216 -   8458610 acattttgggctgggtgattctttgttgtaatggctgtcctgtgaattgtaggatgttaagcagcatcgctggcctctatgaaccagattctagtagcatcccttgag-ggtgatgatc-acaaatgtct----------ccagacattgccaaacattgcctgggagt-----gcaaaaatcacccctgtttgagaatcactgGGTCAGACTATGGCAGAGGGAGAAAGTCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64916418 216 +  75148670 acgttttgggctgggtgattctttgttgtaatggctgtcctgtgaattgtaggatgttaagcagcatcgctggcctctatgaaacagattctagtagcatcccttgag-ggtgatgatc-acaaatgtct----------ccagacattgccaaacattgcctgggagt-----gcaaaaatcacccctgtttgagaatcactgGGTCAGACTATGGTAGAGGGAGAAAGTCA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2156487 216 +   4244037 acattttgggctgggtgattctttgttgtaatggctgtcctgtgaattgtaggatgttaagcagcatcgctggcctctatgaaccaggttctagtagcatcccttgag-ggtgatgatc-accaatgtct----------ccagacattgccaaacattgcctgggagt-----gcaaaaatcacccctgtttgagaatcactgGGTCAGACTATGGCAGAGGGAGAAAGTCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2179475 216 +   4569836 acattttgggctgggtgattctttgttgtaacggctgtcctgtgaattgtaggatgttaagcagcatcgctggcctctgtgaaccagattctagtagcatcccttgag-ggtgatgatc-acaaatgtct----------ccagacattgccaaacattgcctgggagt-----gcaaaaatcacccctgtttgagagtcactgGGTCAGACTATGGCAGAGGGAGAAGGTCA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46135396 216 - 159171411 acattttgggctgggtgatgctttgttgtaaaggctgtcctgtgccttgtaggatgtttagcagcatctctggcctctaggaaccagattctagtagcatcccttgag-ggtgataatc-acaaatgtct----------ccagacattgccaaacattgcctgggagt-----acaaagttcacctctgtttgggaaccactgGGTTAGTCAATGGCAGAGGAAGAAAGTCA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1845036 217 +   3513951 acattttgggctgggtgatgctttgttgtaaaggctgtcctgtgccttgcaggatgtctagcagcatccctggcctctaggaaccagattctagtagcatcccttgag-ggtgacaatc-actaatgtct----------ccagacattgccaaacattgcctgggagt----aacaaaggtcacctctgtttgggaaccactgGGTTAGACAACGGCAGTGGGAGAAAGTCA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1893789 217 +   1920343 acattttgggctgagtgatgctttgttgtaaaggctgtcctgtgccctgtaggatgtttagtagcatccctgtcctctaggaaccagattctagtagcatcccttgag-ggtgataatc-acaaatgtct----------ccagacattgccaaacattgcctggaagt----aacaaaggtcacccctgtttgggaaccgctgGGTTAGACAACGGCAGAGGGAGAAAGTCA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7010126 216 -   7032639 acattttgggctgggtgatgctttgttgtaaaggctgtcatgtgccttgtaggatgtttagcagcatccctggcctctagaaaccagattctggtagcatcccttgag-gatgataacc-aaaaatgtct----------ccagacattgccaaacattgcctgggagt-----acaaaggtcacccctgtttgggaaccactgGGTTAGACAATGGCAGAGGGAGAAAGTCA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22837899 214 +  28711273 aca-tttgggctggattattctttgtcatgggtgctgtcctgggcattgtaggatgtcaagcagcatccctggcctctaccaaccaga-tccactagtgtcccttgag-tgtgatgact-ataaatgtct----------ccagacattgcccaatatcctctgggtgt-----gcaaaacctactcctgtttgagacccactgGGCTAGACAATAGTAGAGGAAGTAAGAGA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22099569 154 - 122082543 ACA-TTTGAATGGGACAGTCATTGGCTGAGGAGCCT-----------TGGAGATCATCAAGCAGAATTCCTGGTCTCT----ACCAG-----------------------------------------------------CCAGGCATTGCCAGACGCCCTGCGGGAAT----CGTGAAGCCAGCCACTG---GAGAATCA---GATTATGCAACGGCAGAGGGAGAAAGTCA
i mm10.chr11                C 0 C 0
s canFam3.chr9              21450939 221 +  61074082 atattttgggctgaaaaattcattgctgtggggaccatctttcacattgttgtatattaagcagaatccctgccctttaccaactaaatgctggtagcataccctaag-tgtgatgatcaaaaaatgtct----------ccagacattggcaaacaac-cctggggatgaggggcaaaaattgcccctatttgagaataactgGGTTATATAGTGGCCAAAGGAGAAATTCA
i canFam3.chr9              C 0 I 3
s dasNov3.JH570468            454210 210 -    852752 acattttggactggataattctttgttgtggggactgccctgtgtattttaggaagtttagcagcattcctggtttttaccaactatatactaatagcacaccctgaattgtgacaatc-aaaaatatct----------ccagacattgccaaatatcccttgg---------acaaaaatcccct---tttgagaaccactAGGTTTGAAAATGGAAATGGGAGAAAGTTA
i dasNov3.JH570468          C 0 C 0

a score=34381.000000
s hg38.chr17_JH159148v1_alt     1042 3 +     88070 AAA
s panTro5.chr17             16323224 3 +  83181570 AAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16228099 3 +  83442489 AAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4063672 3 +   4267968 AAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2043511 3 -   2193130 AAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30117530 3 -  77216781 GAA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28030392 3 -  80997621 GAA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2086637 3 +  10377808 GAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1972395 3 -   8458610 GAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64916634 3 +  75148670 AAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2156703 3 +   4244037 GAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2179691 3 +   4569836 AAA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46135612 3 - 159171411 AAA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1845253 3 +   3513951 AAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1894006 3 +   1920343 AAA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7010342 3 -   7032639 AAA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22838113 3 +  28711273 AAA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22099723 3 - 122082543 ATA
i mm10.chr11                C 0 C 0
s dasNov3.JH570468            454420 3 -    852752 AAA
i dasNov3.JH570468          C 0 C 0
e canFam3.chr9              21451160 3 +  61074082 I

a score=997343.000000
s hg38.chr17_JH159148v1_alt     1045 82 +     88070 GCAAAACTTAATC------ACATTGGT----GTTGGAGTTACTGTCTCATCAAGCCATTGGGATTTATCAT-TGTCTCCTTCCAGAGTCAAGA
s panTro5.chr17             16323227 82 +  83181570 GCAAAACTTAATC------ACATTGGC----GTTGGAGTTACTGTCTCATCAAGCCATTGGGATTTATCAT-TGCCTCCTTCCAGAGTCAAGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16228102 82 +  83442489 GCAAAACTTAATC------ACATTGGC----GTTGGAGTTACTGTCTCATCAAGCCATTGGGATTTATCAT-TGTCTCCTTCCAGAGTCAAGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4063675 82 +   4267968 GCAAAACTTAATC------ACATTGGT----GTTGGAGTTACTGTCTCATCAAGCCATTGGGATTCATCAT-TGTCTCCTTCCAGAGTCAACA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2043514 81 -   2193130 GCAAAACTT-ATC------ACATTGGT----GTTGGATTTACTGTCTCATCAAGCCATTGAGATTTATCAT-TGTCTGCTTCCAGAGTCAAGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30117533 81 -  77216781 GCAAAACTT-ACC------ACATTGAT----GTTGGAGTTACTGTCTCATCAAGCCATTGGGATTTATCAT-TGTCTTCTTCCAGAGTCAAGA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28030395 81 -  80997621 GCAAAACTT-ACC------ACATTGAT----GTTGGAGTTACTGTCTCATCAAGCCATTGGGATTTATCAT-TGTCTCCTTCCAGAGTCAAGA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2086640 81 +  10377808 GCAAAACTT-ACC------ACATTGAT----GTTGGAGTTACTGTCTCATCAAGCCATTGGGATTTATCAT-TGTCTTCTTCCAGAGTCAAGA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1972398 81 -   8458610 GCAAAACTT-ACC------ACATTGAT----GTTGGAGTTACTGTCTCATCAAGCCATTGGGATTTATCAT-TGTCTCCATCCAGAGTCAAGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64916637 81 +  75148670 GCAAAACTT-AAC------ACATTGAT----GTTGGAGTTACTGTCTCATCAAGCCATTGGGATTTATCAT-TGTCTCCTTCCAGAGTCAAGA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2156706 81 +   4244037 GCACAACTT-ACC------ACATAGAT----GTTGGAGTTACTGTCTCATCAAGCCATTGGGATTTATCAT-TGTCTCCTTCCAGAGTCAAGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2179694 82 +   4569836 GCAAAACTTAACC------ACATTGAT----GTTGGAGTTACTGTCTCATCAAGCCATTGGGATTTATCAT-TGTCTCCTTCCAGAGTCAAGA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46135615 85 - 159171411 GCAAAACTT-ATC--CTGTACATTGGT----GTTGGAGTTACTTTCTCCTCAAGCCATTGGGATTTATCGT-TGTCTCCTTCCAGAGTCAAGA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1845256 85 +   3513951 GCAAAACTT-ATC--CTGTACCCTGGT----GTTGGAGTTACTTTCTCATCAAGCCATTGGGATTTATTGT-CGTCTCCTTCCAGAGTCAAGA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1894009 85 +   1920343 GCAAAACTT-ATC--CTGTACACTGGT----GTTGGAGTTACTTTCTCATCAAGCCATTGGGATTTATTGT-TGTCTCCTTCCAGAGTCAAGA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7010345 82 -   7032639 GCAAAACTT-ATC--CTGTACATTGGT----GTTGGAGTTACTTTCTCATCAAGCCATTGGGATTTA---T-CGTCTCCTTCCAGAGTCAAGA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22838116 86 +  28711273 ACACATTGG-AGCTACTGCACATTGGT-----TTGGAGCTGCTGCCTCATCAGGACATTGGGATTTGTTTTCTGTCTCCTTCCA-AGTCAAGA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22099726 81 - 122082543 GCGAAACTT-ACC---TGCACGTGGGTGTTGGTTGGAGTCACTGTCACCACAGGACATTAGGATTGAAT-C-TATCTCCTTCAGACG------
i mm10.chr11                C 0 C 0
s canFam3.chr9              21451163 84 +  61074082 GTGGAACTT-AAC--CAGTACAT-GGT----GTCAGGGTTACTATCTCATCAGGCCATTGAGATTTATCTC-CATTTCCTTCCAGAGTCAAGA
i canFam3.chr9              I 3 C 0
s dasNov3.JH570468            454423 85 -    852752 GTGAAACAT-AGT--TTACATATTGAT----ATTGGAATAAATGCCTCATCAGGTCATTGGGATTTATCTC-TGTTTCCTTCCAGAGCCAAGA
i dasNov3.JH570468          C 0 C 0

a score=5175.000000
s hg38.chr17_JH159148v1_alt     1127 1 +     88070 G
s panTro5.chr17             16323309 1 +  83181570 G
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16228184 1 +  83442489 G
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4063757 1 +   4267968 G
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2043595 1 -   2193130 G
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30117614 1 -  77216781 G
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28030476 1 -  80997621 G
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2086721 1 +  10377808 G
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1972479 1 -   8458610 G
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64916718 1 +  75148670 G
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2156787 1 +   4244037 G
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2179776 1 +   4569836 G
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46135700 1 - 159171411 C
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1845341 1 +   3513951 G
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1894094 1 +   1920343 C
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7010427 1 -   7032639 C
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22838202 1 +  28711273 G
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            454508 1 -    852752 G
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22099807 0 - 122082543 C
e canFam3.chr9              21451247 0 +  61074082 C

a score=120295.000000
s hg38.chr17_JH159148v1_alt     1128 13 +     88070 GGGAGTTGGCCAg
s panTro5.chr17             16323310 13 +  83181570 GGGAGTTGGTCAg
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16228185 13 +  83442489 GGGAGTTGGTCAg
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4063758 13 +   4267968 GGGAGTAGGCCAg
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2043596 13 -   2193130 GGGAGTTGGCCAg
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30117615 13 -  77216781 TGGAGCTGGCCAg
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28030477 13 -  80997621 TGGAGCTGGCCAg
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2086722 13 +  10377808 TGGAGCTGGCCAg
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1972480 13 -   8458610 GGGAGCTGGCCAg
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64916719 13 +  75148670 GGGAGCTGGCCAg
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2156788 13 +   4244037 GGGAGCTGGCCAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2179777 13 +   4569836 GGGAGCTGGCCAG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46135701 13 - 159171411 GGGAGTTGGCTgg
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1845342 13 +   3513951 GGGGGTTGGCCAg
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1894095 13 +   1920343 GGGGGTTGGCCAg
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7010428 13 -   7032639 GGGGATTGGCCAg
i aotNan1.NW_018502359v1    C 0 C 0
s mm10.chr11                22099807 13 - 122082543 AGGAGTTAGCCAG
i mm10.chr11                C 0 I 886
s dasNov3.JH570468            454509  4 -    852752 AAGA---------
i dasNov3.JH570468          C 0 C 0
e canFam3.chr9              21451247  0 +  61074082 C
e otoGar3.GL873537          22838203  0 +  28711273 C

a score=281784.000000
s hg38.chr17_JH159148v1_alt     1141 30 +     88070 ccggatgctgtggctaaagcctataatccc
s panTro5.chr17             16323323 30 +  83181570 ccagatgctgtggctaaagcctataatccc
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16228198 30 +  83442489 ccagatgctgtggctaaagcctataatccc
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4063771 30 +   4267968 ccggatgctgtggctaaagcctataatccc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2043609 30 -   2193130 ccggatgctgtggctaaagcctgtaatccc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30117628 30 -  77216781 ccggatgctgtggctaatgcctgtaatccc
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28030490 30 -  80997621 ccggatgctgtggctaatgcctgtaatccc
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2086735 30 +  10377808 ccggatgctgtggctaatgcctgtaatccc
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1972493 30 -   8458610 ccggatgctgtggctaatgcctgtaatccc
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64916732 30 +  75148670 ccggatgctgtggctaatgcctgtaatccc
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2156801 30 +   4244037 ccggatgctgtggctaatgcctgtaatccc
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2179790 30 +   4569836 TGggatgctgtggctaatgcctgtaatccc
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46135714 30 - 159171411 caggatgcggtggctcaatcctgtaatccc
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1845355 30 +   3513951 caggatgcggtggctcacacctgtaatccc
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1894108 30 +   1920343 caggatgtggtggctcacacctgtaatccc
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7010441 30 -   7032639 caggatgcggtggctcatacctgtaatccc
i aotNan1.NW_018502359v1    C 0 C 0
s dasNov3.JH570468            454513 19 -    852752 -----------GGCTAGGGTTTTAAATCTc
i dasNov3.JH570468          C 0 I 286
e mm10.chr11                22099820 886 - 122082543 I
e canFam3.chr9              21451247  0 +  61074082 C
e otoGar3.GL873537          22838203  0 +  28711273 C

a score=1089716.000000
s hg38.chr17_JH159148v1_alt     1171 109 +     88070 agcacttcgggaggccgaggtgggtgaatcacctgaggtcaggagttcgagaccagcctggccaacgtggtgaaaccgcatctctactaaaaatacaaaaattagctgg
s panTro5.chr17             16323353 109 +  83181570 agcactttgggaggccgaggcgggtgaatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgg
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16228228 109 +  83442489 agcactttgggaggccgaggcgggtgaatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgg
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4063801 109 +   4267968 agcactttgggaggccgaggcaggtgaatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgg
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2043639 108 -   2193130 agcactttgggacaccaaggtgggtgaatcacctgaggt-aggagttggagaccagcctggccaacatggtgaaaccccatctctactaaaactacaaaaattagctgg
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30117658 109 -  77216781 agcactttgggaggtccaggcgggtgaatcatctgaggtcaggagttcaaaaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagttgg
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28030520 109 -  80997621 agcactttgggaggtccaggcgggcgaatcatctgaggtcaggagttcaaaaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagttgg
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2086765 109 +  10377808 agcactttgggaggtccaggcgggcgaatcatctgaggtcaggagttcaaaaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagttgg
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1972523 109 -   8458610 agcactttgggaggtccaggcgggcgaatcatctgaggtcaggagttcaaaaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagttgg
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64916762 109 +  75148670 agcgctttgggaggcccaggtgggcgaatcatctgaggtcaggagttcaaaaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgg
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2156831 109 +   4244037 agcactttgggaggtccaggcgggcgaatcatctgaggtcaggagttcaaaaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattatctgg
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2179820 109 +   4569836 agtactttgggaggcccaggtgggcgaatcatctgaggtcaggagttcaaaaccagcctggccaacatggtgaaacccaatctctactaaaaatacaaaaattagctgg
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46135744 109 - 159171411 agcactttgggaggccgaggcaggaggatcacctgaggtcaggagttcaaaaccagcctggccaacatggtgaaaacctgtctctactaaaaatacaaaaattacctgg
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1845385 109 +   3513951 agcactttgggaggctgaggtgggaggatcacctgagggcaggagttcaaaaccagcctggccaacatggtgaaaacctgtctctactaaaaatacaaaaattagctgg
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1894138 109 +   1920343 agcactttgggaggccgaggtgggaggatcacctgaggtcaggagttcaaaaccagcctggccaacatggtgaaaacctgtctctgctaaaaatccaaaaattagctgg
i cebCap1.NW_016107730v1    C 0 M 3165
s aotNan1.NW_018502359v1     7010471 109 -   7032639 agcactttgggaggccaaggcgggaggatcacttgaggtcaggagttcaaaaccagcctggccaacatggtgaaaacctgtctttactaaaaatacaaaaattagctgg
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22099820 886 - 122082543 I
e canFam3.chr9              21451247   0 +  61074082 C
e dasNov3.JH570468            454532 286 -    852752 I
e otoGar3.GL873537          22838203   0 +  28711273 C

a score=676162.000000
s hg38.chr17_JH159148v1_alt     1280 87 +     88070 tcatggtggcgcacgcctgtagtcccagctact-aggaggctgaggcaggagaattgcttgaatctg---gaaggaggttgcagtgagcca
s panTro5.chr17             16323462 87 +  83181570 tcatggtggtgcacgcctgtagtcccagctact-aggaggctgaggcaggagaattgcttgaatccg---gaaggaggttgcagtgagcca
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16228337 87 +  83442489 tcatggtggtgcacgcctgtagtcccagctact-aggaggctgaggaaggagaattgcttgaatccg---gaaggaggttgcagtgagcca
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4063910 87 +   4267968 tcatggtggcgcacgcctgtagtcccagctact-aggaggctgaggcaggagaattgcttgaatctg---gaaggaggttgcagtgagcca
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2043747 90 -   2193130 tcatggtggcacacgcctgtagtcccacctact-aggaggctgtggcaggacaattgcatgaaccggggaggaggaggttgcagtgagcca
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30117767 90 -  77216781 tcatggaggcgcacacctgtagtcccagttact-aggagattgaggcaggagaattgcttgaacccgggaggaggaggttgcagtgagcca
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28030629 90 -  80997621 tcatggaggcgcacacctgtagtcccagttact-aggagattgaggcaggagaattgcttgaacccgggaggaggaggttgcagtgagcca
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2086874 90 +  10377808 tcgtggaggcgcacacctgtagtcccagttact-aggagattgaggcaggagaattgcttgaacccgggaggaggaggttgcagtgagcca
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1972632 90 -   8458610 tcgtggaggcgcacacctgtagtcccagttact-aggagattgaggcaggagaattgcttgaacccgggaggaggaggttgcagtgagcca
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64916871 90 +  75148670 tggtggaggtgcacacctgtagtcccagttact-aggaggttgaggcaggagaattgcttgaacctgggaggaggaggttgcagtgagcca
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2156940 90 +   4244037 tcgtggaggcgcacacctgtagtcccagttact-aggagattgaggcaggaaaattgcttgaacccgggaggaggaggttgcagtgagcca
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2179929 90 +   4569836 tcgtggaggcgcacacctgtagtcccagttact-aggaggttgaggcaggagaactgcttgaacccgggaggaagaggttgcagtgagcca
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46135853 87 - 159171411 ggatggcggtgcacgcctgtagtcccagctactcaggaagttgaggcaggagaattgcttgaattcaggaggccaagattgcagtga----
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1845494 91 +   3513951 ggattgtggtgcacgcctatagttccagctattcaggaaactgaggcaggagaattgctggaattcgggaggctgaggttgcagtaagcca
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7010580 91 -   7032639 ggatggctttgcacgcctgtagttccagctactcaggaagctgaggcaggagaactgcttgaattcaggaggccgaggttgcagtgagcca
i aotNan1.NW_018502359v1    C 0 I 94
e mm10.chr11                22099820 886 - 122082543 I
e cebCap1.NW_016107730v1     1894247 3165 +   1920343 M
e canFam3.chr9              21451247  0 +  61074082 C
e dasNov3.JH570468            454532 286 -    852752 I
e otoGar3.GL873537          22838203  0 +  28711273 C

a score=269268.000000
s hg38.chr17_JH159148v1_alt     1367 42 +     88070 agatcacttcactgcactccagcctgggcgacagagagagat
s panTro5.chr17             16323549 42 +  83181570 agatcacttcactgcactccagcctgggtgacagagagagat
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16228424 42 +  83442489 agatcacttcactgcactccagcctgggtgacagagagagat
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4063997 42 +   4267968 agatcacttcactgcactccagcctgggcgacagagagagat
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2043837 42 -   2193130 agatcactccactgcactccagcctgggcgacagagagagat
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30117857 42 -  77216781 agatcgcgccattgcactccaacctgggtgacagagacagac
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28030719 42 -  80997621 agatcgcgccattgcactccaacctgggtgacagagacagac
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2086964 42 +  10377808 agatcgcgccattgcactccaacctgggtgacagagacagac
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1972722 42 -   8458610 agatcgcgccattgcattccaacctgggtgacagagacagac
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64916961 42 +  75148670 agatcgtgccattgcactccaacctgggtgacagagagagac
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2157030 42 +   4244037 agattgcgccattgcacttcaacctgggtgacagagacagac
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2180019 42 +   4569836 agattgcaccattgcactccaacctgggtgacagagagagac
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46135940 35 - 159171411 -------gcctctgtactccagcctgggtgatagagcgaaag
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1845585 42 +   3513951 agatggtgccgctgcactccaacctgggtgatggagggaaaa
i saiBol1.JH378271          C 0 I 34
e mm10.chr11                22099820 886 - 122082543 I
e aotNan1.NW_018502359v1     7010671 94 -   7032639 I
e cebCap1.NW_016107730v1     1894247 3165 +   1920343 M
e canFam3.chr9              21451247  0 +  61074082 C
e dasNov3.JH570468            454532 286 -    852752 I
e otoGar3.GL873537          22838203  0 +  28711273 C

a score=65696.000000
s hg38.chr17_JH159148v1_alt     1409 39 +     88070 tctgtct---AAa----cacacacacacacacac-acacac------------------------------------------acacac
s panTro5.chr17             16323591 39 +  83181570 tctgtct---AAa----cacgcacacacacacac-acacac------------------------------------------acacac
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16228466 39 +  83442489 tctgtct---AAa----cacgcacacacacacac-acacac------------------------------------------acacac
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4064039 39 +   4267968 tctgtct---AAa----cacacacacacacacac-acacac------------------------------------------acacac
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2043879 42 -   2193130 tctgtcttaaaaa----cacgcacacacacacac-acagag------------------------------------------aaagag
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30117899 38 -  77216781 tctgtct---aaa----aaaacaaaaacaaaaaa-aCAGCT-------------------------------------------gagag
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28030761 36 -  80997621 tctgtct---aaa----aaaacaaaaacaaaaaa-aCAGCT---------------------------------------------gag
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2087006 33 +  10377808 tctgtct---aaa----aaaacaaaaacaaaaaa-aCAGCT------------------------------------------------
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1972764 39 -   8458610 tctgtct---aaa----aaaacaaaaacaaaaaa-aCagag------------------------------------------agagag
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64917003 86 +  75148670 tccgtct---aaaaaacaaaaccaaaaccaaaaacacacacacacacacacacacacacacacacacagagagagagagagagagagag
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2157072 36 +   4244037 ttcgtct---aaa----aaaacaaaaacaaaaaccac----------------------------------------------aaaaaa
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2180061 47 +   4569836 tctgtct---aaa----aaaacaaaaacaaaaac-aaaaac----------------------------------aaaaaAACagagag
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46135975 39 - 159171411 tcaatct---aag----aaaaaaCagagagagag-agagag------------------------------------------agagag
i calJac3.chr5              C 0 I 10
e mm10.chr11                22099820 886 - 122082543 I
e aotNan1.NW_018502359v1     7010671 94 -   7032639 I
e cebCap1.NW_016107730v1     1894247 3165 +   1920343 M
e canFam3.chr9              21451247  0 +  61074082 C
e dasNov3.JH570468            454532 286 -    852752 I
e otoGar3.GL873537          22838203  0 +  28711273 C
e saiBol1.JH378271           1845627 34 +   3513951 I

a score=17649.000000
s hg38.chr17_JH159148v1_alt     1448  5 +     88070 acaca----------------
s panTro5.chr17             16323630  9 +  83181570 acaca------------caGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16228505 21 +  83442489 acacacacacacacacacaGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4064078 17 +   4267968 acaca----cacacacacaca
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2043921 17 -   2193130 agaga----gaaagagagaga
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30117937 17 -  77216781 agaga----gagagagagaga
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28030797 17 -  80997621 agaga----gagagagagaga
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2087039 16 +  10377808 -gaga----gagagagagaga
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1972803 17 -   8458610 agaga----gagagagagaga
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64917089 17 +  75148670 agaga----gagagagagaga
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2157108 17 +   4244037 aCAGA----CAGAGAGAGAGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2180108 17 +   4569836 agaga----gagagagagaga
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46136024  5 - 159171411 ----------------agaga
i calJac3.chr5              I 10 C 0
s saiBol1.JH378271           1845661  5 +   3513951 ----------------aGAGA
i saiBol1.JH378271          I 34 C 0
e mm10.chr11                22099820 886 - 122082543 I
e aotNan1.NW_018502359v1     7010671 94 -   7032639 I
e cebCap1.NW_016107730v1     1894247 3165 +   1920343 M
e canFam3.chr9              21451247  0 +  61074082 C
e dasNov3.JH570468            454532 286 -    852752 I
e otoGar3.GL873537          22838203  0 +  28711273 C

a score=165633.000000
s hg38.chr17_JH159148v1_alt     1453 21 +     88070 GGAGTTGGCTAGGGTTTTGAA
s panTro5.chr17             16323639 21 +  83181570 GGATTTGGCTAGGGTTTTGAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16228526 21 +  83442489 GGATTTGGCTAGGGTTTTGAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4064095 21 +   4267968 cGAGTTGGCTAGGGTTTTGAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2043938 21 -   2193130 ggagTTGGCTAGGGTTTTGAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30117954 21 -  77216781 ggagTTGGCTAGGGTTTTGAA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28030814 21 -  80997621 ggagTTGGCTAGGGTTTTGAA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2087055 21 +  10377808 ggagTTGGCTAGGGTTTTGAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1972820 21 -   8458610 gGAGTTGGCTAGGGTTTTGAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64917106 21 +  75148670 gGAGTTGGCTAGGGTTTTGAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2157125 21 +   4244037 GGAGTTGGCTAGGGTTTTGAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2180125 21 +   4569836 ggagCTAGCTAGGGTTTTGAA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46136029 15 - 159171411 gGACTTGACTAGGAT------
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1845666 21 +   3513951 GGAGTTGACTAGGGTTTTGAA
i saiBol1.JH378271          C 0 C 0
s canFam3.chr9              21451247 21 +  61074082 GGAGCTGGTCAGAGTTTTAAA
i canFam3.chr9              C 0 C 0
e mm10.chr11                22099820 886 - 122082543 I
e aotNan1.NW_018502359v1     7010671 94 -   7032639 I
e cebCap1.NW_016107730v1     1894247 3165 +   1920343 M
e dasNov3.JH570468            454532 286 -    852752 I
e otoGar3.GL873537          22838203  0 +  28711273 C

a score=63135.000000
s hg38.chr17_JH159148v1_alt     1474 8 +     88070 Cctctgtg
s panTro5.chr17             16323660 8 +  83181570 Cctctgtg
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16228547 8 +  83442489 Cctctgtg
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4064116 8 +   4267968 Cctctgtg
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2043959 8 -   2193130 Cctctgtg
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30117975 8 -  77216781 CCTCTGTA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28030835 8 -  80997621 CCTCTGTA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2087076 8 +  10377808 CCTCTGTA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1972841 8 -   8458610 CCTCTGTA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64917127 8 +  75148670 CCTCTGTA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2157146 8 +   4244037 CCTCTGTA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2180146 8 +   4569836 CCTCTATA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46136044 4 - 159171411 ----TTTG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1845687 8 +   3513951 CCTCTTTG
i saiBol1.JH378271          C 0 C 0
s otoGar3.GL873537          22838203 8 +  28711273 TCTCTGTG
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              21451268 8 +  61074082 TCTCTGTC
i canFam3.chr9              C 0 C 0
e mm10.chr11                22099820 886 - 122082543 I
e aotNan1.NW_018502359v1     7010671 94 -   7032639 I
e cebCap1.NW_016107730v1     1894247 3165 +   1920343 M
e dasNov3.JH570468            454532 286 -    852752 I

a score=2592883.000000
s hg38.chr17_JH159148v1_alt     1482 271 +     88070 ccaagcactggactaagcatttcatatggattaCAGCAATTCTttgaagtaatatgt--attctctcctattttttcacctatacataagatgcagaattcgaaggacaaacaatccaagtgcccatcaat--ggacaattaaattgtggtatattcacccaatgggatattatact---gtgaagatgactggaaaatggcgacatgcaatagcatggatgaatcttactaacatagtgttgattgatataaacaagctccagaaaacc---------------------atacgtgt
s panTro5.chr17             16323668 271 +  83181570 ccaagcactggactaagcatttcatatggattaCAGCAATTCTttgaagtaatatgt--attctctcctattttttcacctatacataagatgcagaattcggaggacaaacaatccaagtgcccatcaat--ggacaattaaattgtggtatattcacccaatgggatattatact---gtgaaaatgactggaaaatggcgacatgcaatagcatggatgaatcttactaacatagtgttgattgatataaacaagctccagaaaacc---------------------atatgtgt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16228555 270 +  83442489 ccaagcactggactaagcatttcatatggattaCAGCAATTCTttgaagtaatatgt--attctctccta-tttttcacctatacataagatgcagaattcggaggacaaacaatccaagtgcccatcaat--ggacaattaaattgtggtatattcacccaatgggatattatact---gtgaaaatgactggaaaatggcgacatgcaatagcatggatgaatcttactaacatagtgttgattgatataaacaagctccagaaaacc---------------------atacgtgt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4064124 271 +   4267968 ccaagcactggactaagcatttcatatggattacagcaattctttgaagtaatatgt--attttctcctattttTTCACCTATACATAAGATGCAGAATTcgaaggacaaacaatccaagtgcccatcaat--ggacaattaaattgtggtatattcacccaatgggatattatact---gtgaaaatgactggaaaatggcgacatgcaatagcatggatgaatcttactaacatagtgttgactgatataaacaagctccagaaaacc---------------------atacgtgt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2043967 271 -   2193130 ccaagcactggactaagtatttcatatggattaCAGCAATTCTGTgaagtaatatgt--attctctcgtattttttcccctatacataagatgcagaatttgaaggacaaacaatccaagtgcccatcaat--ggacaagtaaattgtggtatattcacccaatgagatattatact---gtgaaaataactggaaaatggtgacatgaaatagcatgggtgaatcttactaacataatgttgattgatataaataagctctagaaaacc---------------------atacgtgt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30117983 269 -  77216781 CCAAGTACTGGACTAAGTATTTCATACAGATTACAGCAATTCTGTgaagtaatatgt--attctctcctattttttc-cctgtacataagatgcagaatttgaaggacaaacaatccaagtgcccatccat--ggacaagtaaattgtagtatattcacacaatgggatatcatact---gtgaaaatgactgg-acacggtgacatgcaatagcatgggtgaatcttaccaacataatgttgattgatataaacaagctccggaaaacc---------------------atacgtgt
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28030843 267 -  80997621 CCAAGTACTGGACTAAGTATTTCATACGGATTACAGCAATTCTGTgaagtaatatgt--attctctcctattttttc-cctgtacataagatgcagaatttgaaggacaaacaatccaagtgcccatccat--ggacaagtaaattgtagtatattcacacaatgggatatcatact---gtgaaaatgactgg-acacggggacatgcaatagcatgggtgaatcttaccaacataatgttgattgatataaacaagctccggaaaacc---------------------atac--gt
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2087084 267 +  10377808 CCAAGTACTGGACTAAGTATTTCATACGGATTACAGCAATTCTGTgaagtaatatgt--attctctcctattttttc-cctgtacataagatgcagaatttgaaggacaaacaatccaagtgcccatccat--ggacaagtaaattgtagtatattcacacaatgggatatcatact---gtgaaaatgactgg-acacggggacatgcaatagcatgggtgaatcttaccaacataatgttgattgatataaacaagctccggaaaacc---------------------atac--gt
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1972849 269 -   8458610 CCAAGTACTGGACTAAGTATTTCATATGGATTACAGCAATTCTGTgaagtaatatgt--attctctcctattttttc-cctgtacataagatgcagaatttgaaggacaaacaatccaagtgcccatccat--ggacaagtaaattgtagtatattcacacaatgggatatcatact---gtgaaaatgactgg-acacggtgacatgcaatagcatgggtgaatcttaccaacataatgttgattgatataaacaagctccggaaaacc---------------------atacgtgt
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64917135 269 +  75148670 CCAAGCATTGGACTAAGTATTTCATATGGATTACAGCAATTCTGTgaagtaatatgc--attctctcctattttttc-cctgtacataagatgcagaatttgaaggacaaacaatccaagtgcccatccat--ggacaagtaaattgtagtatattcacacaatgggatatcatact---gtgaaaatgacagg-acatggggacatgcaatagcatgggtgaatcttaccaacataatgttgattgatataaataagctccagaaaacc---------------------atacgtgt
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2157154 269 +   4244037 CCAAGTACTGGACTAAGTATTTCATATGGATTACAGCAATTCGGTgaagtaatatgt--attctctcctattttttc-cctgtacataagatgcagaatttgaaggacaaacaatccaagtgcccatccat--ggacaagtaaattgtagtatattcacacaatgggatatcatact---gtgaaaatgactgg-acacggtgacatgcaatagcatgggtgaatcttaccaacataatgttgattgatataaacaagctccggaaaacc---------------------atacgtgt
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2180154 269 +   4569836 CCAAGCACTGGACTAAGTATTTCATACGGATTACAGCAATTCTGTgaagtaatatgt--attctctcctattttttc-cctgtacataagatgtagaatttgaaggacaaataatccaagtgcccatccat--ggacaagtaaattgtagtatattcacacaatgggatatcatact---gtgaaaatgactgg-acatggtgacatgcaatagcatgggtgaatcttaccaacataatgttgattgatataaacgagctccagaaaacc---------------------atacgtgt
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46136048 270 - 159171411 CCGAGCACTGGACTAAGTATTTCATATGGATTACAGCAATTCTGTgaagtaatatta--atactctcttattttctcctttatatataagatgcagaatttgaaagacaaa-aatccaagtgcccatcaat--agacaaataaattgtggtatatccgcacaatggggtatcatact---atgaaaataactggacaatggtgacctgcaatagcatgggcgaatcttactaacataaaattgattgatattaacaaactccagaaaacc---------------------ataaatgt
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1845695 271 +   3513951 CCAAGCACTGGACTAAGGATCTCCTATGGATTACAGCAATTCTGTGTAGTAATATTT--ATTCTCTCTGATTTTCTCCTTTACATATAAGATGCGGAATTTGAAGGACaaaccatccaagtgcccatcaat--agacaagtaaattgtggtatatccatacaatggggtatcatact---gtgaaaatgactggacagtggtgacctgcaatagcctgggtgaatcttactaacataatgttgactgatataaacaaactccagaaaatc---------------------ctatgtgt
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7010765 271 -   7032639 CCAAGCACTGGACTAAGTATTTCATATGGATTACAGCAATTCTGTGAAGTACTATTA--ATTCTCTCTTATTTTCTCCTTTATATATAAGATGCAGAATGTGAAGGACaaaaaatccaagtgcccatcaat--agacaagtaaattgtggtatatccacacaatgggatatcatact---gtgaaaatgactggacaatggtgacctgcaatagcatgggtgaatcttactaacataatgttgattgatataaacaaactccagaaaacc---------------------atacgtgt
i aotNan1.NW_018502359v1    I 94 C 0
s otoGar3.GL873537          22838211 291 +  28711273 CCAAGAGCTGGACTTAGTGTTTTACATAATTCACAGCAATTTTGTGAAGTAATATTTTCTTCCTCTCCTATTTTCTT-Cctatgtacaagaggaagaatctgaaggacaaacaatccaagtgcccctcaac--agacatgtaaattgtggtatattcatacaatggaatattgca-----gtgaaaatgattagagaacggctgcatgaaacaacacaggtgaagcttactaacataacgtacattaataaaaacaaacctcagaagacCTCTCCCTCGatatatatctctatacatat
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              21451276 248 +  61074082 CCAAGCAC-AGACCCAGTGTTTAATGTAAATCATAGCAATTCTGTGAAGTAAGATTT--CTTTCCCTCTACTTT-------------------AGGAGTATGAGTGACaaataatccaaggaccaataaatagagacaagaaaattgtggtatattcacacaat-aaatactatgctacagtgaaaataactggacaatggccatatgcaa-aatggggatgaacctaacgagtgtagagt----tgatataaacaagcctc--aagatc---------------------acatgttt
i canFam3.chr9              C 0 C 0
e mm10.chr11                22099820 886 - 122082543 I
e cebCap1.NW_016107730v1     1894247 3165 +   1920343 M
e dasNov3.JH570468            454532 286 -    852752 I

a score=1517040.000000
s hg38.chr17_JH159148v1_alt     1753 221 +     88070 gtgtatatatttatgtat-------attaatataa--tg------tgtg-------------tatatATATA------CACACACTCAAACATATATGTGTGTAT-------TGTTCAAAAACCACAGACA--CACATATGT------ATGAGTATACATGCATTT---------------------------ATACACATAT----------------------------------------------------------------GTACACACACAA--------------------------ACAC-------------------ATATATATA-AAG----------------------------GGAGTGAT------AAA----ATTCACGATTGTCATGGCTAATAAGTAACATGC--AAATGAC------------------TAAAACCCAG--------------------TTCTT
s panTro5.chr17             16323939 221 +  83181570 gtgtatatatttatgtat-------attaatataa--tc------tgtg-------------tatatatata------cacacactcaaacatatatgtgtgtat-------tgttcaaaaaCCACAGACA--CACATATGT------ATGAGTatacatgcattt---------------------------atacacatat----------------------------------------------------------------gcacacacacaa--------------------------acac-------------------atatatata-AAG----------------------------GGAGTGAT------AAA----ATTCACGATTGTCATGGCTAATAAGTAACATGC--AAATGAC------------------TAAAACCCAG--------------------TTCTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16228825 221 +  83442489 gtgtatatatttatgtat-------attaatataa--tc------tgtg-------------tatatatata------cacaCACTCAAACATATATGTGTGTAT-------TGTTCAAAAACCACAGACA--CACATATGT------ATGAGTatacatgcattt---------------------------atacacatat----------------------------------------------------------------gcacacacacaa--------------------------acac-------------------atatatata-AAG----------------------------GGAGTGAT------AAA----ATTCACGATTGTCATGGCTAATAAGTAACATGC--AAATGAC------------------TAAAACCCAG--------------------TTCTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4064395 223 +   4267968 gtgtatatttttatGtat-------attaatataa--tg------tgtg-----------tatatatatata------cacacactcaaacatatatgtgtgcat-------tgttcaaaaactacagaca--cacatatgt------atgagtatacatgcattt---------------------------atacacatat----------------------------------------------------------------gcacacacacaa--------------------------acac-------------------atatatata-AAG----------------------------GGAGTGAT------AAA----ATTCACGATTGTCATGGCTAATAAGTAACATGC--AAATGAC------------------TAAAACCCAG--------------------TTCTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2044238 225 -   2193130 gtatatatatttatgtat-------attaatataa--tg------aatg---------------tatatata------cacacaCTCAAACATATATGTGTGCAT-------TGTTCAAAAACCACAGACA--CACATATGT------ATGAGTATACATGCATTT---------------------------atacacatac----------------------------------------------------------------gcacacacacaa--------------------------acacac-----acat--------atatataTA-TAG----------------------------GGAGTGAT------AAA----ATTCACAATTGTCATGGCTAATAAGTAGCACAC--AAATGAC------------------TAAAACCCAG--------------------CTCTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30118252 243 -  77216781 gtgtatatatttatgtat-------attaatataatgtg------tgtg-------------tatatatata------cacacacTCAAACATACGTGAGTGTAT-------TGTTCAAAAACTGCAGGCA--CACATATGT------ATGAGTATACATGCCTTT---------------------------ATacacatac----------------------------------------------------------------gcacatacacaaa---------catacatata-tat--acacac-----acac--------acaTATATG-AAG----------------------------GGAGTGAT------AAA----ATTCACGATTGTCGTGGCTAATAAGTAACATGC--AAATGAC------------------TAAAACTCAA--------------------TTATT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28031110 243 -  80997621 gtatatatatttatgtat-------attaatataatgtg------tgtg-------------tatatatata------cacacacTCAAACATACGTGAGTGTAT-------TGTTCAAAAACCGCAGGCA--CACATATGT------ATGAGTATACATGCCTTT---------------------------ATacacatac----------------------------------------------------------------gcacatacacaaa---------catacatata-tat--acacac-----acac--------acaTATATG-AAG----------------------------GGAGTGAT------AAA----ATTCACGATTGTCGTGGCTAATAAGTAACATGC--AAATGAC------------------TAAAACCCAA--------------------TTATT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2087351 245 +  10377808 gtgtatatatttatgtat-------attaatataatgtg------tgtg-------------tatatatata------cacacacTCAAACATACGTGAGTGTAT-------TGTTCAAAAACCGCAGGCA--CACATATGT------ATGAGTATACATGCCTTT---------------------------ATacacatac----------------------------------------------------------------gcacatacacaaa---------catacatata-tatacacacac-----acac--------acaTATATG-AAG----------------------------GGAGTGAT------AAA----ATTCACGATTGTTGTGGCTAATAAGTAACATGC--AAATGAC------------------CAAAACCCAA--------------------TTATT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1973118 247 -   8458610 gtgtatatatttatgtat-------attaatataatgtg------tgtg---------tgtatatatatata------cacACACTCAAACATACGTGAGTGTAT-------TGTTCAAAAACTGCAGGCA--CACATATGT------ATGAGTATACACGCCTTT---------------------------ATacacatac----------------------------------------------------------------gcacatacacaaa---------catacatata-tat--acacac-----acac--------acaTATATG-AAG----------------------------GGAGTGAT------AAA----ATTCACGATTGTCGTGGCTAATAAGTAACATGC--AAATGAC------------------TAAAACTCAA--------------------TTATT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64917404 239 +  75148670 gtgtatatatttatgtat-------attaatataa--tg------tgtg-------------tatatatata------cacacaGTCAAACATACGTGAGTGTAT-------TGTTCAAAAACCGCAGGCA--CACatatgt------atgagtgtacatgcattt---------------------------atacacatac----------------------------------------------------------------acacatacacaaa---------cat--atata-tat--acacac-----acac--------atatataTA-AAG----------------------------GGAGTGAT------AAA----ATTCATGATTGTCGTGGCTAGTAAGTAACATGC--AAATGAC------------------TAAAACCCAA--------------------TTCTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2157423 243 +   4244037 gtgtatatatttatgtat-------attaatataatgtg------tgtg-------------tatatatata------cacacactcaaacatacgtgagtgtat-------tgttcaaaaaCTGCAGGCA--CACATATGT------ATGAGTATACATGCCTTT---------------------------ATacacatat----------------------------------------------------------------gcacatacacaaa---------catacatata-tat--acacac-----acac--------acaTATATG-AAG----------------------------GGAGTGAT------AAA----ATTCACGATTGTTGTGGCTAATAAGTAACATGC--AAATGAC------------------TAAAACCCAA--------------------TTATT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2180423 249 +   4569836 gtgtatatatttatgtat-------attaatataa--tg------tgtg-------------tatatatata------cacacactcaaacatacgtgagtgtat-------tgttcaaaaaCCGCAGGCA--CACatatgt------atgagtatacatgcattt---------------------------atacacatac----------------------------------------------------------------acacatacacaaa---------catatatata-cac--acacac-----acacatatatatatatataTA-AAG----------------------------GGAGTGAT------AAA----ATTCACGGTTGTCATGGCTAGTAAGTAACATGC--AAATAAC------------------TAAAACCCAA--------------------TTCTT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46136318 196 - 159171411 gtgtatatatgtatgtat-------attaatataa--tg---------------------------------------------------------tgtgtgtat-------tgttgagaaaccacagacacacaaatattt------atgagtatacatgcatgt---------------------------atgcacatac----------------------------------------------------------------aaacacacaaac--------------------------acacat-----------------atatatata-tag----------------------------ggagtgataa--acaaa----attcatgattgtCATGGCTAATAAGTAACATAC--AAATAA-------------------TAAAACCCAG--------------------TTCTT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1845966 218 +   3513951 gtgtatatatgtatgcat-------attaatataa--tgtgtgtgtata-------------tacatatata------cacacactcataca----tgtgtgtat-------tgttcagaaaCCACAGACAC-cacatatgt------atgggtatacatgc---------------------------------------ac----------------------------------------------------------------acacacataaac--------------------------acacat-----------------atatgcata-AAT----------------------------GGAGTGATAA--ACAAA----ATTCATGATTGTCGTGGCTAATAAGTAACATAC--AAATAAC------------------TAAAACCCAG--------------------TTCTT
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7011036 225 -   7032639 gtgtatatatgtatgtat-------attaatataa--tg------tgtg-------------tatatacata------cacacactcatacat--gtgtgtatat-------tgttgagaaaccacagacacacacatattt------atgagtatacatgcatgt---------------------------atacacatac----------------------------------------------------------------aaacacacaa----------------------------aCACAT-----------------ATATATATA-AAG----------------------------GGAGTGATAA--ACAAA----ATTCATAATTGTCATGGCTAATAAGTAACATAC--AAATAAC------------------TAAAACCCAG--------------------TTCTT
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22838502 420 +  28711273 atatacacacacatatataGGGTGGACTTACATAATATA------TATGAAGTTCAACTCTCTTTATATATAAAATTCAAAAAGTTCACACATATATGTATGCATATGCATGAATACACACACCACACACA--CTCAGATGTGGTGCCAAAAATATGCATACAAATTTTAAGAAAGCAAAAAACTATATTAAAATACTCATGTCACATTTGACTTCTGCTATAATAAGAGAAGCAAGATACAATATTCCAGATAACAAATATTATTGGTATATATATAAAATCTGTGTGTATGAATACATTAT--ATACATTATTGGTAT--------ATATATATA-AAAATAAACGTCTCTGTGTGTGTGTGTGTGTGTAGCGAT------AAATGATATTCAGGATAGTcacagctagtaagtaacacac--aaataac------------------taaaacccag--------------------ttctg
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              21451524 225 +  61074082 ata-----------gctc-------aaaaacaaca--cc------cata--------------------ata------ca--------------------tgcat-------------------------a--cacatatgt------atgaggatacacacatat---------------------------atgcatacat----------------------------------------------------------------atatatgtacata---------caaatatata------ccttat-----------------gtatgttcacaag----------------------------ggaatgctaaacacaga----atttaagatagCCACAGGGAGTAAGTAACATACAAAAATAACATACAATGTAAATACATATAATATACAAATGGCATATAGAATAGTGGTTTCTG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            454818 169 -    852752 ATGTATACATCCAAATAC-------ACAGACATGG----------CATT-------------TAtatatatt-----------------------atgtatgtat-----------------------gta--tatatgtat------atgagtgtgtgtgcatgt---------------------------gtgtaGGGAA----------------------------------------------------------------AGATTAACACAA--------------------------ACTC-------------------A---------AAA------------------------------------------TAA----ATCTaggttagtcacagttagtaagtaacttac--aaagga-------------------tgaaaaccag--------------------gcctg
i dasNov3.JH570468          I 286 C 0
e mm10.chr11                22099820 886 - 122082543 I
e cebCap1.NW_016107730v1     1894247 3165 +   1920343 M

a score=528746.000000
s hg38.chr17_JH159148v1_alt     1974 50 +     88070 TCCAAAG-CCTAGGTTCTGTAT------GGATCATGATATGTCTCAATGTGGTCAC--A
s panTro5.chr17             16324160 50 +  83181570 TCCAAAG-CCTAGGTTCTGTAT------GGATCATGATATGTCTCAATGTGGTCAC--A
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16229046 50 +  83442489 TCCAAAG-CCTAGGTTCTGTAT------GGATCATGATATGTCTCAATGTGGTCAC--A
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4064618 50 +   4267968 TCCAAAG-CCTAGGTTCTGTAT------GGATCATGATATGTCTCAATGTGGTCAC--A
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2044463 50 -   2193130 TCCAAAG-CCTAGGTTCTGTAT------GGATCATGATATGTCTCAATGTGGTCAC--A
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30118495 51 -  77216781 TCCAAAG-CCTAGGTTCTGTGT------GGATCATCATATTTCTCAATGTGGTCAC-AA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28031353 51 -  80997621 TCCAAAG-CCTAGGTTCTGTGT------GGATCATCATATTTCTCAATGTGGTCAC-AA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2087596 51 +  10377808 TCCAAAG-CCTAGGTTCTGTGT------GGATCATCATATTTCTCAATGTGGTCAC-AA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1973365 51 -   8458610 TCCAAAG-CCTAGGTTCTGTGT------GGATCATCATATTTCTCAATGTGGTCAC-AA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64917643 51 +  75148670 TCCAAAG-CCTAGGTTCTGTGT------GGATCATTATATTTCTCAATGTGGTCAC-AA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2157666 51 +   4244037 TCCAAAG-CCTAGGTTCTGTGT------GGATCATCATATTTCTCAATGTGGTCAC-AA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2180672 51 +   4569836 TCCAAAG-CCTAGGTTCTGTGT------GGATCATCATATTTTTCAATGTGGTCAC-AA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46136514 53 - 159171411 TCCAAAGCCCTATGTTCTGTAT------GGATCATCGTATTTCTCAGTGTGGTCACAAA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1846184 51 +   3513951 TCCAAAG-CCTATGTTCTGTAT------GGATCATCATATTTCTCAGTGTGGTCAC-AA
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7011261 51 -   7032639 TCCAAAG-CCTATGTTCTGTAT------GGACCATCATATTTCTCAGTGTGGTCAC-AA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22838922 49 +  28711273 tccaaag-tct--gtTTTTAAT------GAATCACCGTATTTCTTGATGTGGTTGC-AA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22100706 57 - 122082543 tcgaaat-gctgagtcctgtctcccgccccATGACTGTATCTCTTGCTGTAGTCAC-GC
i mm10.chr11                I 886 C 0
s canFam3.chr9              21451749 50 +  61074082 TCCAAAG-TTTGTGTTTTTTTA------TGATCATCATGTTTTTTGATGTGATCAC-A-
i canFam3.chr9              C 0 I 3
s dasNov3.JH570468            454987 49 -    852752 tccaaag-cctgtgatttttgt------gcatcatcacattTTTTGATGTGGTCAT---
i dasNov3.JH570468          C 0 C 0
e cebCap1.NW_016107730v1     1894247 3165 +   1920343 M

a score=34300.000000
s hg38.chr17_JH159148v1_alt     2024 3 +     88070 GGT
s panTro5.chr17             16324210 3 +  83181570 GGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16229096 3 +  83442489 GGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4064668 3 +   4267968 GGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2044513 3 -   2193130 GGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30118546 3 -  77216781 GGT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28031404 3 -  80997621 GGT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2087647 3 +  10377808 GGT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1973416 3 -   8458610 GGT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64917694 3 +  75148670 GGT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2157717 3 +   4244037 GGT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2180723 3 +   4569836 GGT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46136567 3 - 159171411 GGT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1846235 3 +   3513951 GGT
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7011312 3 -   7032639 GGT
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22838971 3 +  28711273 GAT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22100763 3 - 122082543 AAT
i mm10.chr11                C 0 C 0
s dasNov3.JH570468            455036 3 -    852752 GAC
i dasNov3.JH570468          C 0 C 0
e cebCap1.NW_016107730v1     1894247 3165 +   1920343 M
e canFam3.chr9              21451799 3 +  61074082 I

a score=751980.000000
s hg38.chr17_JH159148v1_alt     2027 71 +     88070 GTCTTTG-TT-GATACACTAGGTGTTTTTAGTGCCTTGAACTACAGCAA---GACAGA------TGTT-------CTTGCTATTAAGAG
s panTro5.chr17             16324213 71 +  83181570 GTCTTTG-TT-GATACACTAGGTGTTTTTAGTGCCTTGAACTACAGCAA---GACAGA------TGTT-------CTTGCTATTGAGAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16229099 71 +  83442489 GTCTTTG-TT-GATACACTAGGTGTTTTTAGTGCCTTGAACTACAGCAA---GACAGA------TGTT-------CTTGCTATTGAGAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4064671 71 +   4267968 GTCTTTG-TT-GATACACTAGGCATTTTTAGTGCCTTGAACTACAGCAA---GACAGA------TGTT-------CTTGCTATTGAGAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2044516 71 -   2193130 GTCTTTG-TT-GATATACTAGGTGCTTTTAGTGCCTTGAACTACAGCAA---GACAGG------TGTT-------CTTGCTATTGAGAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30118549 71 -  77216781 GTCTTTG-TT-GATACACTGCATGTTTTTAGTGCCTTGAACTACAGCAA---GACAGC------TGTT-------CTTGCGATTGAGAG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28031407 71 -  80997621 GTCTTTG-TT-GATACACTGCGTGTTTTTAGTGCCTTGAACTACAGCAA---GACAGC------TGTT-------CTTGCGATTGAGAG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2087650 71 +  10377808 GTCTTTG-TT-GATACACTGCGTGTTTTTAGTGCCTTGAACTACAGCAA---GACAGC------TGTT-------CTTGCGATTGAGAG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1973419 71 -   8458610 GTCTTTG-TT-GATACACTTCGTGTTTTTAGTGCCTTGAACTACAGCAA---GACAGC------TGTT-------CTTGCGATTGAGAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64917697 71 +  75148670 GTCTTTG-TT-GATACAGTGGGTGTTTTTAGTGCCTTGAACTATAGCAA---GACAGT------TGTT-------CTTGTGATTGAGAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2157720 71 +   4244037 GTCTTTG-TT-GATACACTGCGTGTTTTTAGTGCCTTGAACTACAGCAA---GACAGC------TGTT-------CTTGCGATTGAGAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2180726 71 +   4569836 GTCTTTG-TT-GATACACTGGGTGTTTTTAGTGCCTTGAACTACAGCAA---GACAGC------TGTT-------CTTGCGATTGAGAG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46136570 77 - 159171411 GTCTTTG-AT-GGTACACTAGGTGTTTTTAATGCCTTGAACTACAGCAA---GGTGGA------TGCTGGATGC-CTTGCTATTGAGAG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1846238 78 +   3513951 GTCTTTG-TT-GGTACACTAGGTGTTTTTAGTGCCTTGAACTACAGCAA---GATGGA------AGTCGGATGCTCTCGCTATTGAGAG
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7011315 78 -   7032639 GTCTTTG-TC-GGTACACTAGGTGTTTTTAATGCCTTGAACTACAGCAA---GATGGA------TGTTGGATGTTCTCGCTATTGAGAG
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22838974 72 +  28711273 GTCTTTG-GTAGATTCACTAGGTGTCTTTAGTGCTTTGAATCACAGCAA---AATGGA------TATT-------CTCTCTATTGAGAA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22100766 81 - 122082543 GCCTTGGAAT-GATGTTGCAGGTGTCTTCAGAGCCTTTAATCACATTAAGTTGATAGAAAATATTTTT-------TTCTCAACTGGGGT
i mm10.chr11                C 0 C 0
s canFam3.chr9              21451802 71 +  61074082 GCCCTTG-GT-GATACACTAGATGTGTTTAGTGCCGTGAACCACAGCAA---AATGAA------AGGT-------GTCACTATTTAGAG
i canFam3.chr9              I 3 I 324
s dasNov3.JH570468            455039 67 -    852752 AGCCTTG-GT-GATACTCTAGATGTCCTTAGATCCTTGAGTGACAGCAA---AGTAGA------TCTT-------CT----ATTGATAG
i dasNov3.JH570468          C 0 C 0
e cebCap1.NW_016107730v1     1894247 3165 +   1920343 M

a score=91933.000000
s hg38.chr17_JH159148v1_alt     2098 8 +     88070 TTTCCTTT
s panTro5.chr17             16324284 8 +  83181570 TTTCCTTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16229170 8 +  83442489 TTTCCTTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4064742 8 +   4267968 TTTCCTTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2044587 8 -   2193130 TTTCCTTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30118620 8 -  77216781 GTTCCTTT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28031478 8 -  80997621 GTTCCTTT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2087721 8 +  10377808 GTTCCTTT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1973490 8 -   8458610 GTTCCTTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64917768 8 +  75148670 GTTCCTTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2157791 8 +   4244037 GTTCCTTT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2180797 8 +   4569836 GTTCCTTT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46136647 8 - 159171411 GTTCCTTT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1846316 8 +   3513951 GCTCCTTT
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7011393 8 -   7032639 GCTCCTTG
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22839046 8 +  28711273 GTTCCTTT
i otoGar3.GL873537          C 0 I 543
s mm10.chr11                22100847 8 - 122082543 ATTTTATT
i mm10.chr11                C 0 I 4
s canFam3.chr9              21452197 8 +  61074082 GTTTCTTT
i canFam3.chr9              I 324 C 0
s dasNov3.JH570468            455106 8 -    852752 GTTTCTTT
i dasNov3.JH570468          C 0 C 0
e cebCap1.NW_016107730v1     1894247 3165 +   1920343 M

a score=591631.000000
s hg38.chr17_JH159148v1_alt     2106 47 +     88070 AGGAGAAAAGAAAACAAGAGCAGAATCACTTAGAGAAAAATGGATGT
s panTro5.chr17             16324292 47 +  83181570 AGGAAAAAAGAAAACAAGAGCAGAATCACTTAGAGAAAAATTGATGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16229178 47 +  83442489 AGGAAAAAAGAAAACAAGAGCAGAATCACTTAGAGAAAAATTGATGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4064750 47 +   4267968 AGGAGAAAAGAAAACAAGAGCAGAATCACTTAGAGAAAAATGGATGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2044595 47 -   2193130 AGGAGAAAAGAAAACAAGAACAGAATCACTTAGAGAAAAATGGATGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30118628 47 -  77216781 AGGAGGAAAGAAAACAAGAGCAGAATCACTTAGAGAAAAATGGATGG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28031486 47 -  80997621 AGGAGGAAAGAAAACAAGAGCAGAATCACTTAGAGAAAAATGGATGG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2087729 47 +  10377808 AGGAGGAAAGAAAACAAGAGCAGAATCACTTAGAGAAAAATGGATGG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1973498 47 -   8458610 AGGAGGAAAGAAAACAAGAGCAGAATCACTTAGAGAAAAATGGATGG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64917776 47 +  75148670 AGGAGGAAAGAAAACAAGAGCAGAATCACTTAGAGAAAAATGGATGT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2157799 47 +   4244037 AGGAGGAAAGAAAACAAGAGCAGAATCACTTACAGAAAAATGGATGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2180805 47 +   4569836 AGGAGGAAAGAAAACAAGAGCAGAATCACTTAGAGAAAAATAGATGT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46136655 47 - 159171411 AGGAGGAAAGAAAACAAGAGCAGAATCACTTAGAGAAAAATGGATGT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1846324 47 +   3513951 AGGAGGAAAGGAAACAAGAGCAGAATCACTTAGAGAAAAACAAATGT
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7011401 47 -   7032639 AGGAGGAAAGAAAACAAGAGCAGAACCACTTAGAGAAAAATGGAAGT
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22839597 47 +  28711273 aagaggaaaggaatGAAGAGCGGAATCATGAAGAGAAAAATAGATGT
i otoGar3.GL873537          I 543 I 2
s mm10.chr11                22100859 46 - 122082543 AAGAAAAAA-AAAGTAAAAGCAAAATCAGTTGGAGAAAAACAGACAA
i mm10.chr11                I 4 C 0
s canFam3.chr9              21452205 43 +  61074082 AGGAGGAAGAAAGACAAGAACAGAATCA----GAGAAAAATGGATCT
i canFam3.chr9              C 0 I 1
s dasNov3.JH570468            455114 47 -    852752 AAGAAGAAAAGAAACAAGAACAGAATCCCTTAGAgaaaaatggatgg
i dasNov3.JH570468          C 0 I 13
e cebCap1.NW_016107730v1     1894247 3165 +   1920343 M

a score=293441.000000
s hg38.chr17_JH159148v1_alt     2153 23 +     88070 AGAATGGATTGCTTTAAAACTAT
s panTro5.chr17             16324339 23 +  83181570 AGAATGGATTGCTTTAAAACTAT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16229225 23 +  83442489 AGAATGGATTGCTTTAAAACTAT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4064797 23 +   4267968 AGAATGGATTGCTTTAAAACTAT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2044642 23 -   2193130 AGAATGGATTGCTTTAAAACTAT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30118675 23 -  77216781 AGAATGGATTGCTTTAAAACTAT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28031533 23 -  80997621 AGAATGGATTGCTTTAAAACTAT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2087776 23 +  10377808 AGAATGGATTGCTTTAAAACTAT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1973545 23 -   8458610 AGAATGGATTGCTTTAAAACTAT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64917823 23 +  75148670 AGAATGGATTGCTTTAAAACTAT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2157846 23 +   4244037 AGAATGGATTGCTTTAAAACTAT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2180852 23 +   4569836 AGAATGGATTGCTTTAAAACTAT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46136702 23 - 159171411 AGAATGAATTGCTTTAAGACTAC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1846371 23 +   3513951 AGAACGGATTGCTTTAAGACTAC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1897492 23 +   1920343 AGAATGGATAGCTTTAAGACTAC
i cebCap1.NW_016107730v1    M 3165 C 0
s aotNan1.NW_018502359v1     7011448 23 -   7032639 AGAATGGATTGCTTTAAGACTAC
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22839646 23 +  28711273 AAAATTAACTGCTTTAGAACTAT
i otoGar3.GL873537          I 2 C 0
s mm10.chr11                22100905 21 - 122082543 GAAATGAA--GCTTTCTGTTGAT
i mm10.chr11                C 0 I 5
s canFam3.chr9              21452249 23 +  61074082 AAAATGGATTGTTTTAAAACAAT
i canFam3.chr9              I 1 C 0
s dasNov3.JH570468            455174 20 -    852752 aaaatggatTGCTTAACATA---
i dasNov3.JH570468          I 13 C 0

a score=1788980.000000
s hg38.chr17_JH159148v1_alt     2176 161 +     88070 AAAAGT-----G-GTAT----------AGGATATTG------------G-------ACTGAAGTTGATGTG-ATTTTTCAAACATGCTCATG-TTCCCAGTTTGATTGACATATTTGGTAAGACTGAAAGTATTAAATACATC-CTCTGGGAAGATGAAGAGCTTTGGGG-GTAAATAT-TCAGCAATAAAACACAGTGCA
s panTro5.chr17             16324362 161 +  83181570 AAAAGT-----G-GTAT----------AGGATATTG------------G-------ACTGAAATTGATGTG-ATTTTTCAAATATGCTCATG-TTCTCAGTTTGATTGACATATTTGGTAAGACTGAAAGTATTAAATACATC-CTCTGGGAAGATGAAGAGCTTTGGGG-GTAAATAT-TCAGCAATAAAACACAGTGCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16229248 161 +  83442489 AAAAGT-----G-GTAT----------AGGATATTG------------G-------ACTGAAGTTGATGTG-ATTTTTCAAATATGCTCATG-TTCTCAGTTTGATTGACATATTTGGTAAGACTGAAAGTATTAAATACATC-CTCTGGGAAGATGAAGAGCTTTGGGG-GTAAATAT-TCAGCAATAAAACACAGTGCA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4064820 161 +   4267968 AAAAGT-----G-GTAT----------GGGATACTG------------G-------ACTGAAGTTGATGTG-ATTTTTCAAATATGCTCATG-TTCCCAGTTTGATTGACATATTTGGTAAGACTGAAAGTATTAAATACATC-CTCTGGGAAGATGAAGAGCTTTGGGG-GTAAATAT-TCAGCAATAAAACACAGTGCA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2044665 163 -   2193130 AAAAGT-----G-GTAT----------AGGATATTG------------G-------ACTGAAGTTGATGTATATTTTTCAAATATACTCATG-TTCCCATTTTGATTGACATATTTGGTAACACTGAAAGTATTAAATACTTC-CTCTGGGAAGATGAAGAGTTTTGGGGTGTAAATAT-TCAGCAATAAAATGCAGTGCA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30118698 162 -  77216781 AAAAGT-----G-GTAT----------AGGATATTG------------G-------ACTGAAGTTGATGTG-ATTTTTCAATTATACTCATG-TTCCCATTTTGATTGACATATTTAGTAAGACTGAAAGTATTAAATACTTC-CTTTGGGAAGATGAAGAGCTTTGGGGTGTAAATAT-TCAGCAATAAAACACAGTGCA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28031556 162 -  80997621 AAAAGT-----G-GTAT----------AGGATATTG------------G-------ACTGAAGTTGATGTG-ATTTTTCAATTATACTCATG-TTCCCATTTTGATTGACATATTTAGTAAGACTGAAAGTATTAAATACTTC-CTTTGGGAAGATGAAGAGCTTTGGGGTGTAAATAT-TCAGCAATAAACCACAGTGCA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2087799 162 +  10377808 AAAAGT-----G-GTAT----------AGGGTATTG------------G-------ACTGAAGTTGATGTG-ATTTTTCAATTATACTCATG-TTCCCATTTTGATTGACATATTTAGTAAGACTGAAAGTATTAAATACTTC-CTTTGGGAAGATGAAGAGCTTTGGGGTGTAAATGT-TCAGCAATAAACCACAGTGCA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1973568 162 -   8458610 AAAGGT-----G-GTAT----------AGGATATTG------------G-------ACTGAAGTTGATGTG-ATTTTTCAATTATACTCATG-TTCCCATTTTGATTGACATATTTAGTAAGACTGAAAGTATTAAATACTTC-CTTTGGGAAGATGAAGAGCTTTGGGGTGTAAATAT-TCAGCAATAAACCACAGTGCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64917846 162 +  75148670 AAAAGT-----G-GTAT----------AGGATATTG------------G-------ACTGAAGTTGATATG-ATTTTTCAGTTATACTCATG-TTCCCATTTTGATTGACATATTTGGTAAGACTGAAAGCATTAAATACTTC-CTTTGGGAAGATGAAGAGCTTTGGGGTGTAAATAT-TCAGCAATAAAACACAGTGCA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2157869 162 +   4244037 AAAAGT-----G-GTAT----------AGGATATTG------------G-------ACTGAAGTTGATGTG-ATTTTTCAATTATACTCATG-TTCCCATTTTGATTGACATATTTAGTAAGACTGAAAGTATTAAATACTTC-CTTTGGGAAGATGAAGAGCTTTGGGGTGTAAATAT-TCAGCAATAAAACACAGTGCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2180875 162 +   4569836 AAAAGT-----G-GTAT----------AGGATATTG------------G-------ACTGAAGTTGATGTG-ATTTTTCAATTACACTCATG-TTCCCATTTTGATTGACATATTTGGTAAGACTGAAAGTATTAAATACTTC-CTTTGGGAAGATGAAGAGCTTTGGGGTGTAAATAT-TCAGCAATAAAACACAGTGCA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46136725 162 - 159171411 AAAAGT-----G-GTAT----------AGGATATTG------------G-------ATTGAAGTTGATGTG-ATTTTTCAAATATACTCATG-TTCCCATTTTGATTGACATATTTGGTAAGACCAAACGTATTAAATCCTTC-CTCTGGGAAGATGAAGAGCTTTGGGGTGTAAATAT-TTAGCAATGAAACCCAGTGCA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1846394 158 +   3513951 AAAAGT-----G-GCAT----------AGGATATTG------------G-------ATTGAAGTTGATGTG-ATTTTTCAAATATGCCTATG-TTCCCATTTTGATTGACATATTTGGTAAGACCAAATGTATTAAATGTTTC-CTCTGGAA----GATGAGCTTTGGGGTGTAAATAT-TCAGCAACGAAACCCAGTGCA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1897515 162 +   1920343 AAAAGT-----G-GTAT----------AGGATATTG------------G-------ATTGAAGTTGATGTG-ATTTTtcaaatatattcacg-ttcccatgttgattgacatatttggtaagaccaaaagtACTAAATCCTTC-CTCTGGGAAGATGAAGAGCTTTGGGGTGTGAATAT-TCAGCAATGAAACCCAGTGCA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7011471 143 -   7032639 AAAAGT-----G-GTAT----------AGGATATTG------------G-------ATTGAAGTTGATGTG-ATTTTTCAAATATACTCATG-TTCTCA-------------------TAAGACCAAACGTATTAAATCCTTC-CTCTGGGAAGATGAAGAGCTTTGGGGTGTAAATAT-TCAGCAATGAAACCCAGTGCA
i aotNan1.NW_018502359v1    C 0 C 0
s mm10.chr11                22100931 166 - 122082543 AGGGGTGGCCCG-GCAC----------GGAATTTCA------------GTTTTCAAACTCAAATTGATGTC-CTATTTCAAGTATTTGTATGTTTCTTATTCTGGTTGACTTCTTTGGTGAG---------ATTAAATATCTCTCTCTCGGGGGATAAAGAACTTTGGG--GTAAACATATCAGAATTATAGGGGTGTGCA
i mm10.chr11                I 5 I 628
s canFam3.chr9              21452272 175 +  61074082 AAAAGT-----G-GTATGTATGAATACAGGACATTGACACCCTTTTCAG-------GTTGAAGTTGAAATA-GTTTCTCAAATATATCCATA-TTCCCAGTATGATTGACTTATATGACAAGACCAAAAGTAT--------TT-CTTTTGAAAGATGAA-AGCTTTGGGTTATAGACAG-TCAAGAACAGAACAGACTGCA
i canFam3.chr9              C 0 I 1
s dasNov3.JH570468            455194 167 -    852752 AAAAGC-----GAGTGT----------AGTGTATTGGCACCTTTTCCAG-------ACTGAAGTCAACATG-GTTCTTTAAATATAATCATG-TTTCAATATTGATTGACCTGTTT-GTAAAATAAAATTTATT-------TA-TTCTTGGGAGATAAAGAGCATTTGGAGATAGATAT-TCTGGAATAAAATGTTATGCA
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22839669   0 +  28711273 C

a score=55893.000000
s hg38.chr17_JH159148v1_alt     2337 7 +     88070 TGGATTC-
s panTro5.chr17             16324523 7 +  83181570 TGGATTC-
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16229409 7 +  83442489 TGGATTC-
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4064981 7 +   4267968 TGGATTC-
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2044828 7 -   2193130 ATAAAAC-
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30118860 7 -  77216781 TGGATTC-
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28031718 7 -  80997621 TGGATTC-
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2087961 7 +  10377808 TGGATTC-
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1973730 7 -   8458610 TGGATTC-
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64918008 7 +  75148670 TGGATTC-
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2158031 7 +   4244037 TGGATTC-
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2181037 7 +   4569836 TGGATTC-
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46136887 7 - 159171411 TGGATTC-
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1846552 7 +   3513951 TGGATTC-
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1897677 7 +   1920343 TGGATTC-
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7011614 7 -   7032639 TGGATTC-
i aotNan1.NW_018502359v1    C 0 C 0
s canFam3.chr9              21452448 6 +  61074082 TGGTCC--
i canFam3.chr9              I 1 C 0
s dasNov3.JH570468            455361 7 -    852752 -GGGCTCT
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22101097 628 - 122082543 I
e otoGar3.GL873537          22839669 0 +  28711273 C

a score=2860515.000000
s hg38.chr17_JH159148v1_alt     2344 249 +     88070 CTGCAGATTGAAAGATGCCAACATGAATACAGACAAGAAGGAGGGCAAAAGAAGTGATCCATGGTGTGACATAGAAACCAACTGTGGGGAA---AAAGGCATTTCAATGGCAGGGGAGAAGG-TTTTCCAGACA-TTGTTCTGATCAAAAATG-TTTCTCTTCTTTTTAAAATGGAGGT---GAAGAGGGTGCCAAGGAGAAGGCATTTTGTAGC------TGGGGGTTTGCAAAGTACCCTTCAGCGTTTTCAGTATTTTCAA
s panTro5.chr17             16324530 249 +  83181570 CTGCAGATTGAAAGATGCCAACATGAATACAGACAAGAAGGAGGGCAAAAGAAGTGATCCATGGTGTGACATAGAAACCAACTGTGGGGAA---AAAGGCATTTCAATGGCAGGGGAGAAGG-TTTTCCAGACA-TTGTTCTGATCAAAAATG-TTTCTCTTCTTTTTAAAATGGAGGT---GAGGAGGGTGCCAAGGAGAAGGCATTTTGTAGC------TGGGGGTTTGCAAAGTACCCTTCAGCGTTTTCAGTATTTTCAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16229416 249 +  83442489 CTGCAGATTGAAAGATGCCAACATGAATACAGACAAGAAGGAGGGCAAAAGAAGTGATCCATGGTGTGACATAGAAACCAACTGTGGGGAA---AAAGGCATTTCAATGGCAGGGGAGAAGG-TTTTCCAGACA-TTGTTCTGATCAAAAATG-TTTCTCTTCTTTTTAAAATGGAGGT---GAGGAGGGTGCCAAGGAGAAGGCATTTTGTAGC------TGGGGGTTTGCAAAGTACCCTTCAGCGTTTTCAGTATTTTCAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4064988 248 +   4267968 CTGCAGACTGAAAGATGCCAACATGAATACAGACAAGAAGGAGGGCAAAAGAAGTGATCCATGGTGTGACACAGAAACCAACTGTGGGGAA---AAAGGCATTTCAATGGCA-GGGAGAAGG-TTTTCCAGACA-TTGTTCTGATCAAAAATG-TTTCTCTTCTTTTTAAAATGGAGGT---GAGGAGGGTGCCAAGGAGAAGGCATTTTGTAGC------TGGGGGTTTGCAAAGCACCCTTCAGCGTTTTCAGTATTTTCAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2044835 247 -   2193130 --GCAGATTGAAAGATGCCAACATGAATACAGACAAGAAGGAGGGCAAAAGAAGTGATCCACGGTGTGACATAGAAACCAATTGTGGGGAA---AAAGGCGTTCCAATGGCAGGGGAGAAGG-TTTTCCAGACG-TTGTTCTCATCAAAAATG-TTTCTCTTCTTTTTAAAATGAGGGT---GAGGAGGGTGCCAAGGAGAAGGCATTTTGTAGC------TGGGGGTTTGCAAAGTACCCTTCAGCGTTTTCAGTATTTTCAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30118867 249 -  77216781 TTGCAGATTGAAAGATGCCAACATGAATAGAGACAAGAAGGAGGGCAAAAGAAGTGATCCATGGTGTGACATAGAAACCAATTGTGGGGAA---AAAGGCGTTTCAATGACAGGGGAGAAGG-TTTTCCAGACA-TTGTTCTGATCAAAAACG-TTTCTCTTCTTTTTAAAATGAGGGT---GAGGAGGGTGCCAAGGAGAAGGCGTTTTGTAGC------TGGGGGTTTGCAAAGTACCCTCCAGCGTTTCCAGTATTTTCAA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28031725 249 -  80997621 TTGCAGATTGAAAGATGCCAACATGAATAGAGACAAGAAGGAGGGCAAAAGAAGTGATCCATGGTGTGACATAGAAACCAATTGTGGGGAA---AAAGGCGTTTCAATGACAGGGGAGAAGG-TTTTCCAGACA-TTGTTCTGATCAAAAACG-TTTCTCTTCTTTTTAAAATGAGGGT---GAGGAGGGTGCCAAGGAGAAGGCGTTTTGTAGC------TGGGGGTTTGCAAAGTACCCTCCAGCGTTTCCAGTATTTTCAA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2087968 249 +  10377808 TTGCAGATTGAAAGATGCCAACATGAATAGAGACAAGAAGGAGGGCAAAAGAAGTGATCCATGGTGTGACATAGAAACCAATTGTGGGGAA---AAAGGCGTTTCAATGACAGGGGAGAAGG-TTTTCCAGACA-TTGTTCTGATCAAAAACG-TTTCTCTTCTTTTTAAAATGAGGGT---GAGGAGGGTGCCAAGGAGAAGGCGTTTTGTAGC------TGGGGGTTTGCAAAGTACCCTCCAGCGTTTCCAGTATTTTCAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1973737 249 -   8458610 TTGCAGATTGAAAGATGCCAACATGAATAGAGACAAGAAGGAGGGCAAAAGAAGTGATCCATGGTGTGACATAGAAACCAATTGTGGGGAA---AAAGGCGTTTCAATGACAGGGGAGAAGG-TTTTCCAGACA-TTGTTCTGATCAAAAACG-TTTCTCTTCTTTTTAAAATGAGGGT---GAGGAGGGTGCCAAGGAGAAGGCGTTTTGTAGC------TGGGAGTTTGCAAAGTACCCTCCAGTGTTTCCAGTATTTTCAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64918015 249 +  75148670 CTGCAGATTGAAAGATGCCAACATGAGTAGAGACAAGAAGGAGGGCAAAAGAAGTGATCCATGGTGTGACATAGAAACCAATTGTGGGGAA---AAAGGCATTTCAATGACAGGGGAGAAGG-TTTTCCAGACA-TTGTTCTGATCAAAAACA-TTGCTCTTCTTTTTGAAATGAGGGT---GAGGAGGGTGCCAAGGAGAAGGCATTTTGTAGC------TGGGGGTTTGCAAAGTACCCTCCAGTGTTTCCAGTATTTTCAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2158038 249 +   4244037 CTGCAGATTGAAAGATGCCAACATGAATAGAGACAAGAAGGAGGGCAAAAGAAGTGATCCATGGTGTGACATAGAAACCAATTGTGGGGAA---AAAGGTGTTTCAATGACAGGGGAGAAGG-TTTTCCAGACA-TTGTTCTGATCAAAAACG-TTTCTCTTCTTTTTAAAATGAGGGT---GAGGAGGGTGCCAAGGAGAAGGCGTTTTGTAGC------TGGGGGTTTGCAAAGTACCCTCCAGCGTTTCCAGTATTTTCAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2181044 249 +   4569836 CTGCAGATTGAAAGATGCCAACATGAATAGAGACAAGAAGGAGGGCAAAAGAAATGATCCATGGTGTGACATAGAAACCAATTGTGGGGAA---AAAGGTGTTTCAAAGACAGGGGAGAAGG-TTTTCCAGACA-TTGTTCTGATCAAAAACG-TTTCTCTTCTTTTTAAAATGAGGGT---GAGGAGGGTGCAAAGGAGAAGGCATTTTGTGGC------TGGGGGTTTGCAAAGTACCCTCCAGTGTTTCCAGTATTTTCAA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46136894 255 - 159171411 CAGCAGACTGAAAGATGGCAACATGAATAGAGACAAGAAGGAGGGCTGAAGAAGTCATCCATGGTATGACATAGAAACCAACTGTGGGGGA---AAAGGTGTTTCAGTGTCAACAGGGAAGA-TTTTCCAGACA-TTTTTCTGATCAAAAACG-TTTCTCTTCTTTTTAAAATGAGGGT---GAGGGGGGTGCCAAGAAGAAAGCATTTTGTAGCTGTAGTTGATGGTTTGCAAAGTACCCTCCAGCATTTCCAGCATTTTCAA
i calJac3.chr5              C 0 I 2
s saiBol1.JH378271           1846559 255 +   3513951 CTGCAGATTGAAAGATGGCAACATGAATAGAAACAAGAAGGAGGGCCGAAGAAGTCATCCATGGCATGACATAGAAACCAACTGTGGGGAA---AAAGGTGGTTCAGTGACAACGGGAAAGA-TTTTCCAGACA-TTTTTCTGACCAAAAATG-TTTCTCTTCTTTTTAAAATGAGGGT---GAGGAGGGTGCCAAGAAGAAGGCATTTTGTAGCTAGAGCTGGTGATTTGCAAATTACCCTCCAGCGTTTCCAGCATTTTCAA
i saiBol1.JH378271          C 0 I 2
s cebCap1.NW_016107730v1     1897684 256 +   1920343 CTGCAGACTGAAAGATGGCAACATGAATAGAGAGAAGAAGGTGGGCTGAAGAAGTCATCCATGGCATGACATAGAAACCAACTGCGGGGAA---AAAGGTGTTTCAGTGACAACAGGGAAGA-TTTTCCAGACATTTTTTCTGATCAAAGACG-TTTCTCTTCTTTTTAAAACGAGGGT---GAGGAGGGTGCTAAGAAGAAGGCATTTTGTAGCTGTAGTTGGTGGTTTGCAGATTACCCTCCAGCGTTTCCAGCATTTTCAA
i cebCap1.NW_016107730v1    C 0 I 32
s aotNan1.NW_018502359v1     7011621 251 -   7032639 CTGCAGATTGAAAGATGGCAACATGAATAGAAACAAGAAGGAGGGCCGGAGAAGTCATCCATG------CATAGAAACCAACCGTGGGGAA---AAAGGTGCTTCAGTGACAACAGGGAAGACTTTTCCAGACA-TTGTTCTGATCAAAAACGTTTTCTCTTCTTTTTAAAATGAGGGT---GAGGAGGGTGCCAAGAAGAAGGTATTTTGTAGCTGTAGCTGCTGGTTTGCAAAGTACCCTCCAGCGTTTCCAGCATTTTCAA
i aotNan1.NW_018502359v1    C 0 I 23
s mm10.chr11                22101725 246 - 122082543 CTGCAGTTTTAAAGATGACAGAATGAG--AGTGTGAGGAGGAGGGAGCCAGGAGCCATCCACAGCATGATGGAAAGA-CAGTGGTAGAGAA-GGAAGGGCTCTTTAATGACCAGGGAGAGTG-CCTGCCAGGCG-TGGCTCTCCCCAGGA--G-TTTGTCTTCTTTCAGAACAGGGGTA---GAAGAGAGAGCCAAAGAGACAAGACTCCACAGC------TGCTCCCTTGCCTAGTCCCTTCCAGAATCTCCAGCTATTTCAT
i mm10.chr11                I 628 C 0
s canFam3.chr9              21452454 248 +  61074082 CTGCTGTTTGCAAGGTGCGAA-ATTATTAGTGATAAGTTGGATGGCAAAAGGAGTGATTGGTGCTGTAACACAAATGGCAATGGTAGAAAAAAAAAAGGTACTTTAATGACAAGGGTTAGGA-TTTCCCAGGCA-TCATTCTGATCA-------CTTCTTTTCCTTTTAAAATGAGGGTGAGGAGGAGGGTGCCAAGGAGCAGGTATTCTTTAGC------TGGTACTTTGAAATGTACCTTCCAGAATTTCCAGCATTTTCAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            455368 225 -    852752 CTGTTGCTGGCAAGCTGCCATAATCAA-ACAGACACAATGGAAGGCAGAAATA------------CTGACATAAAAAACAATTCCAGAGAA----AAGGTATTTTAATGA-AAAGGGGAGGA-TTTTCCAGGCA-CTGTTCAGATCAAAAAAG-TTTCTCTTCTTT-------GAGGAT---AAAGAAGGTGCCAAAGAGAAAGCATTTTGTAGC------TGGTACTTTGAAAATT--TTTCCAGAATCCCCAGCATTTTCAA
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22839669   0 +  28711273 C

a score=154795.000000
s hg38.chr17_JH159148v1_alt     2593 22 +     88070 TAATTTGTGAAGCAACCAAAGC
s panTro5.chr17             16324779 22 +  83181570 TAATTTGTGAAGCAACCAAAGC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16229665 22 +  83442489 TAATTTGTGAAGCAACCAAAGC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4065236 22 +   4267968 TAATTTGTGAAGCAACCAAAGC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2045082 22 -   2193130 TAATTTGTGAAGCAACCAAAAC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30119116 22 -  77216781 TAATTTGTGAAGCAACCAAAAC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28031974 22 -  80997621 TAATTTGTGAAGCAACCAAAAC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2088217 22 +  10377808 TAATTTGTGAAGCAACCAAAAC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1973986 22 -   8458610 TAATTTGTGAAGCAACCAAAAC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64918264 22 +  75148670 TAATTTGTGAAGCAACCAAAAC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2158287 22 +   4244037 TAATTTGTGAAGCAACCAAAAC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2181293 22 +   4569836 TAATTTGTGAAGCAACCAAAAC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46137151 20 - 159171411 CAACC--AGAaaaaacaaaaac
i calJac3.chr5              I 2 C 0
s saiBol1.JH378271           1846816 20 +   3513951 CAATC--AGaaaaaaaaaaaac
i saiBol1.JH378271          I 2 C 0
s mm10.chr11                22101971 20 - 122082543 CTGTTTCGGAAGCAGCTGAG--
i mm10.chr11                C 0 C 0
s canFam3.chr9              21452702 21 +  61074082 TAATTT-TGAGGCAGCTAATAA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            455593 22 -    852752 TAATTTATGAGACAGACAATAA
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7011872 23 -   7032639 I
e cebCap1.NW_016107730v1     1897940 32 +   1920343 I
e otoGar3.GL873537          22839669  0 +  28711273 C

a score=35176.000000
s hg38.chr17_JH159148v1_alt     2615 3 +     88070 AAA
s panTro5.chr17             16324801 3 +  83181570 AAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16229687 3 +  83442489 AAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4065258 3 +   4267968 AAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2045104 3 -   2193130 AAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30119138 3 -  77216781 AAA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28031996 3 -  80997621 AAA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2088239 3 +  10377808 AAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1974008 3 -   8458610 AAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64918286 3 +  75148670 AAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2158309 3 +   4244037 AAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2181315 3 +   4569836 AAA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46137171 3 - 159171411 aaa
i calJac3.chr5              C 0 I 2
s saiBol1.JH378271           1846836 3 +   3513951 aaa
i saiBol1.JH378271          C 0 I 19
s aotNan1.NW_018502359v1     7011895 3 -   7032639 aaa
i aotNan1.NW_018502359v1    I 23 C 0
s canFam3.chr9              21452723 3 +  61074082 AAA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            455615 3 -    852752 GAA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22101991 0 - 122082543 C
e cebCap1.NW_016107730v1     1897940 32 +   1920343 I
e otoGar3.GL873537          22839669 0 +  28711273 C

a score=2927767.000000
s hg38.chr17_JH159148v1_alt     2618 266 +     88070 CAAACACCCACAAAAAACTAACCTGAGACATGACAACGc----agttgatgaaatcgccatactttgaagacttaggtaattagctaacatattcaacagaatgagttagtggcagagccagaaatcaaggccagccccatctggctccccacaccgtga--tctttccactccgtcatgtgcctcCAGCGTGAACC-GGCCAGAACGTTGGCTGGTGTAGAACACCGGACCTGGTTGGTGATGCGG-AGCCAGGACAAGCCCGGAGGAAAAGC
s panTro5.chr17             16324804 266 +  83181570 CAAACACCCACAAAAAACTAACCTGAGACATGGCAACGc----agttgatgaaatcgccatactctgaagacttaggtaattagctaacacattcaacagaatgagttagtggcagagccagaaatcaaggccagccccatctggctccccacaccgtga--tctttgcactctgtcatgtgcctcCAGCGTGAACC-GGCCAGAACGTTGGCTGGTGTAGAACACCGGACCTGGTTGGTGATGCGG-AGCCAGGACAAGCCCGGAGGAAAAGC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16229690 266 +  83442489 CAAACACCCACAAAAAACTAACCTGAGACATGGCAACGc----agttgatgaaatcgccatactctgaagacttaggtaattagctaacacattcaacagaatgagttagtggcagagccagaaatcaaggccagccccatctggctccccacaccgtga--tctttgcactctgtcatgtgcctcCAGCGTGAACC-GGCCAGAACGTTGGCTGGTGTAGAACACCGGACCTGGTTGGTGATGCGG-AGCCAGGACAAGCCCGGAGGAAAAGC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4065261 265 +   4267968 CAAACACCCTCAAAAAACTAACCTGAGACATGGCAAtgc----agttgatgaaatcgccatactttgaagacttaggtaattagctaacacattcaacagaatgagttagtggcagagccagaaatcaaggccagccccatctggctccccacaccgtga--tctttccactccgtcatgtgcct-cAGCGTGAACT-GGCCAGAACGTTGGCTGGTGTAGAACACCGGACCTGGTTGGTGATGCGG-AGCCAGGACAAGCCCGGAGGAAAAGC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2045107 267 -   2193130 CAAACACCCACAAAAAACTAACCTGAGACACGGCAACGC----AGTTGATGAAATCGCCATACTTTGAAGACTTAGGTAATTATCTAACACATCCAACAGACTGagttagtggcagagccagaaatcaaggccagccccatctggctccccacaccgtga--tctttccactccgtcatgtgcctcCAGCATGAACCAGGCCAGGACGTTGGCTGGTGTAGAACACTGGACCTGGTTGGTGATGCGG-AGCCAGGACAAGCCCGGAGGAAAAGC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30119141 266 -  77216781 CAAACACCCATAAAAAAAGAATCTGAGACACGGCAATGC----AGTTGATGAAATCGCCGTACTTTGGAGACTTAGGTAAATAGCTAACACATCCAACAGACTGagttagtggcagacccagaaatcaaggccagccccatctggctccccgcaccatga--tctttccactccgtcatgcg-ctccAGCATGAACCAGGCCAGGACGTTGGCTGGTGTAGAACACTGGACCTGGCTGGTGATGCGG-AGCCAGGACAAGCCCAGAGGAAAAGC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28031999 266 -  80997621 CAAACACCCATAAAAAAAGAATCTGAGACACGGCAAtgc----agttgatgaaatcgccgtactttggagacttaggtaaatagctaacacatccaacagactgagttagtggcagacccagaaatcaaggccagccccatctggctccccgcaccatga--tctttccactccgtcatgcg-ctccAGCATGAACCAGGCCAGGACGTTGGCTGGTGTAGAACACTGGACCTGGCTGGTGATGCGG-AGCCAGGACAAGCCCAGAGGAAAAGC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2088242 266 +  10377808 CAAACACCCATAAAAAAAGAATCTGAGACACGGCAAtgc----agttgatgaaatcgccgtactttggagacttaggtaaatagctaacacatccaacagactgagttagtggcagacccagaaatcaaggccagccccatctggctccccgcaccatga--tctttccactccgtcatgcg-ctccAGCATGAACCAGGCCAGGACGTTGGCTGGTGTAGAACACTGGACCTGGCTGGTGATGCGG-AGCCAGGACAAGCCCAGAGGAAAAGC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1974011 266 -   8458610 CAAACACCCATAAAAAATGAATCTGAGACATGGTAATGC----AGTTGATGAAATCGCCGTACTTTGAAGACTTAGGTAAATAGCTAACAAATCCAACAGACTGagttagtggcagacccagaaatcaaggccagccccatctggctcaccacactgtga--tctttccactccgtcatgcg-ctccAGCATGAACCAGGCCAGGACGTTGGCTGGTGTAGAACACTGGACCTGGCTGGTGATGCGG-AGCCAGGACAAGCCCAGAGGAAAAGC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64918289 265 +  75148670 CAAACACCCATAAAAAACGAATCTGAGACACGGCAAtgc----agttgatgaaattgccatactttgaagacttaggtaattagctaacacatccaacaga-tgagttagtggcagacccagaaatcaaggccagccccatctggctccccacaccatga--tctttccactccgtcatgcg-ctccAGTATGAACCAGACCAGGACATTGGCTGGTGTAGAACACTGGACCTGGCTGGTGATGCGG-AGCCAGGACAAGCCCAGAGGAAAAGC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2158312 266 +   4244037 CAAACACCCATAAAAAACGAATCTGAGACACGGCAAtgc----agttgatgaaatcgccgtactttgaagacttaggtaaatagctaacacatccaacagactgagttagtggcagacccagaaatcaaggccagccccatctggctccccacactgtga--tctttccactccgtcatgcA-CTCCAGCATGAACCAGGCCAGGACGTTGGCTGGTGTAGAACACTGGACCTGGCTGGTGATGCGG-AGCCAGGACAAGCCCAGAGGAAAAGC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2181318 267 +   4569836 CAAACACCCACAAAAAACGAATCTGAGACACGGCAAtgc----agttgatgaaatcgccatactttgaagacttaggtaattagctaacacatccaacagactgagttagtggcagacccagaaatcaaggccagccccatctggctccccataccgtga--tctttccactccatcatgcgcctcCAGCATGAACCAGGCCAAGACATTGGCTGGTGTAGAACACTGGACCTGGCTGGTGATGCGG-AGCCAGGACAAGCCCAGAGGAAAAAC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46137176 267 - 159171411 caaaaaACCAACAGCAACTAACCTGAAACATGGCAAGGC----AGTTGATGAGATCTTTATACTTTGAAGACTTAGGTAATTAGCTAACACATCCAACAGACTGagttagtggcagggccagaaatcaaggccagtcccatctggccatctgaaccatga--tctttccattctgtcatgcgcctcCTGCATTAACCAGGTCAGGACGTGGGCTGGTGTAGAACACTGGACCTGGTTAGTGATGTGG-AGCCGGGACAAGCCCAGAGGAAAAGC
i calJac3.chr5              I 2 C 0
s saiBol1.JH378271           1846858 264 +   3513951 caaaaaaCCAACAACAACTAACCTGAAACATGGCAAGGC----AGTTGATGA-ATCTCCATTCTTTGAAGACTTAGGTAATTCGCTAACACATCCAACAGACTGCgttagtggcaaagccagaaaccaaggccagtcctgtctggctccccgaactgtga--tctttccattctgtcatgcgcctcctGCATGAACCAGGTCAGGATGTGGGCTGGTGTAGAACAT--GACCTGGTTGGTGATGCGG-AGCCAGGACAAGCCCAGAGGAAAAGC
i saiBol1.JH378271          I 19 C 0
s cebCap1.NW_016107730v1     1897972 267 +   1920343 caaaaaTCCAACAGcaactaacctgaaacatggcaaggc----aggtgatgaaatctccatactttgaagacttaggtaattagctaacacatccaacagactgagttagtggcagagccagaaatcaaggccagtcccgtctggctccctgaaccgtga--tctttccattgtgtcatgtgcctcCTGCATGAACCAGGTCAGGACGTGGGCTGGTGTAGAACACTGGACCTGGTTGGTGATGCGG-AGCCAGGACAAGCCCAGAGGAAAAGC
i cebCap1.NW_016107730v1    I 32 C 0
s aotNan1.NW_018502359v1     7011898 267 -   7032639 caaaaaaccaatagcaactaacctgaaacaTGGCAAGGC----AGTTGATGAAATCTCCATACTTTGAAGACttaggtaattagctaacacatccaacagactgagttagtggcagagccagaaatcaaggccagtcccgtctggctccccaaactgtga--tctttccattctgtcatgcgcctcctGCATTAACCAGGTCAGGATGTGGGCTGGTGTAGAACACTGGACCTGGTTGGTGATGTGG-AGCCAGGACAAGCCCAGAGGAAAAGC
i aotNan1.NW_018502359v1    C 0 C 0
s mm10.chr11                22101991 237 - 122082543 -----------------TTAACCCAAGAAACATCAAGGC----ACCTTAGGATGTCCTGGTACTTTGAAGATGTAGGTAATGAGCCATCCTGTTCCACCGAATGAGCT----GCAAATCCAGG---------CAGCCCTGCCTGCCGATCCACACCAGCA--TCCTTCCATTCCATCGCAAG-TCTTAGCAGGAACCAGGCCAGGACATGCACTTGCGTGGGATGCTGGAATCAGTCGGTGGTGCAGCCGCCCACTTGAGCCCAGAGGAAAAAG
i mm10.chr11                C 0 C 0
s canFam3.chr9              21452726 257 +  61074082 ------------TAAAAATAACCTGAGCAACAGCAATGCAGTGAGTTGGTAAACTCTCAGTACTTTGCATACTTGGGTAATGAGCTAACAAGTCCcacagagtgagttagtagcagagccagaaaatgacaccagccctgttgtgatcccaaggccaaga--tttttcTGTTTTGCTGTGAATCTTTGGTGTGAACCAGGTTAGGACAGGGTCGGGTGTGAGATGCTGAAGTTGGC-GGTGATGCAG-AGCCAGGATGAGCCCAGAAAAGGGG-
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            455618 235 -    852752 CAAAAAT-------------AGTTGAGCATTAGCAATGA----GGTTGATGAAATAAC-----------------AGTAAttagctaacttgtccaacagagtaagttgttcacagacccaaaatttaagatcaatccttcctggatcccaaaaccatgatttttttccacctcatcatgTATGTTCA-CACGAACCAGGCCTGGTAGTGGACAGATGTGTGAC---GAAGCTAATTGGTGATGCAG-GGCCAGCCCATGCCCAGAGGAAGAGG
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22839669   0 +  28711273 C

a score=5657897.000000
s hg38.chr17_JH159148v1_alt     2884 517 +     88070 AG-AAGGGCCAAGAA----AGTCCCTCACGAATTCCTCTTGGAAGGGATTGGTTTAACATTAACACCACTTTACAGTGA------TTTTTTTTATTATCACTGCTGGC----GTGTTTTTAT-TTGTATAGAATTCATATGCTATTGAT-GCCCTAGGGTGGGTTTGATACTTCCTGATGAAATATTTGGTAG-----------------------TTTAAAAAATTTC---------------------------------------------------------------------------------------------CAAAATTAAAAG--------ACTGTGTTTGA----------------------------------------------GTGTATTGATAAGTAGAGGTAAGTACTCACACCAGTGTGGTCTAGCTGCTGATTACAGTCACTGGA--GTGGGCGGAGGAT--CCCCAGGATGGGGCCTGGGCAACCTGCTCACGAGCCAGTCTGTTGCCATAGGGGTGTCAGCCTGCAGCCACTATATCAG----TGTCGCCTTCTCCCTGCCTCCCCAAAGTCAGGGGGTCTAATAGgtggttaagatcaggggtttggtggtcagacaaagctaggtttgaattttgtttctaccccttttcatttgcataattttgggaacatgatttaaactctatg----a
s panTro5.chr17             16325070 516 +  83181570 AG-AAGGTCCAAGAA----AGTCCCTCATGAATTCCTCTTGGAAGGGATTGGTTTAACATTAACACCACTTTACAGTGA------TTTTTTT-ATTATCACTGCTGGG----GTGTTTTTAT-TTGTATAGAATTCATATGCTGTTGAT-GCCCTAGGGTGGGTTTGATATTTCATAATGAAATATTTGGTAG-----------------------TTTTAAAAATTTC---------------------------------------------------------------------------------------------TAAAATTAAAAG--------ACTGTGTTTGA----------------------------------------------GTGTATTGATAAGTAGAGGTAAGTACTCACACCAGTGTGGTCTAGCTGCTGATTACAGTCACTGGA--GTAGGCGGAGGAT--CCCCAGGATGGGGCCTGGGCAACCTGCTCACGAGCCAGTCTGTTGCCATAGGGGTGTCAGCCTGCAGCCACTATATCAG----TGTTGCCTTCTCCCTGCCTCCCCAAAGTCAGGGGGTCTAataggtggttaaggtcaggggtttggtggtcagacaaagctaggtttgaattttgtttctaccccttttcatttgcataattttgggaacatgatttaaactctatg----a
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16229956 516 +  83442489 AG-AAGGTCCAAGAA----AGTCCCTCATGAATTCCTCTTGGAAGGGATTGGTTTAACATTAACACCACTTTACAGTGA------TTTTTTT-ATTATCACTGCTGGG----GTGTTTTTAT-TTGTATAGAATTCATATGCTGTTGAA-GCCCTAGGGTGGGTTTGATACTTCATAATGAAATATTTGGTAG-----------------------TTTTAAAAATTTC---------------------------------------------------------------------------------------------CAAAATTAAAAG--------ACTGTGTTTGA----------------------------------------------GTGTATTGATAAGTAGAGGTAAGTACTCACACCAGTGTGGTCTAGCTGCTGATTACAGTCACTGGA--GTAGGCGGAGGAT--CCCCAGGATGGGGCCTGGGCAACCTGCTCACGAGCCAGTCTGTTGCCATAGGGGTGTCAGCCTGCAGCCACTATATCAG----TGTTGCCTTCTCCCTGCCTCCCCAAAGTCAGGGGGTCTAATAGgtggttaaggtcaggggtttggtggtcagacaaagctaggtttgaattttgtttctaccccttttcatttgcataattttgggaacatgatttaaactctatg----a
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4065526 516 +   4267968 AG-AAGGGCCAAGAA----AGTCCCTCATGAATTCCTCTTGGAAGGGATTGGTTTAACATTAACACCACTTTACAGTGA------TTTTTTT-ATTATCACTGCTGGC----GTGTTTTTAT-ATGTATAGAATTCATATGCTGTTGAT-GCCCTAGGGTGGGTTTGATACTTCCTGATGAAATATTTGGTAG-----------------------TTTAAAAAATTTC---------------------------------------------------------------------------------------------CAAAATTAAAAG--------ACTGTGTTTGA----------------------------------------------GTGTATTGAAAAGTAGAGGTAAGTACTCACACCAGTGTGGTCTAGCTGCTGATTACAGCCACTGGA--GTGGGCGGAGGAT--CCCCAGGATGGGGCCTGGGCAACCTGCTCACGAGCCAGTCTGTTGCCATAGGGGTGTCGGCCTGCAGCCACTATATCAG----TGTCGCCTTCTCCCTGCCTCCCCAAAGTCAGGGGGTCTAATAGgtggttaagatcaggggtttggtggtcagacaaagctaggtttgaattttgtttctaccccttttcatttgcataattttgggaacatgatttaaactctatg----A
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2045374 520 -   2193130 AG-AAGGGCTAAGAA----AGTCCCTCATGAATTCCTCTCGGAAGGGATTGGTTTAACATTAACACCACTTTACAGTGA------TTTTTTT-ATTATCACTGCTGGC----GTGTTTTTAT-TTGTATAGAATTCATATGCTGTTGAT-GCCCTAGGGTGGGTTTGATCCTTCTTGATGAAATATTTGGTAG-----------------------TTTTAAAAATTTC---------------------------------------------------------------------------------------------CAAAATTAAAAG--------ACTGTGTTTGG----------------------------------------------ATGTATTGATAAGTAGAGGTAAGTATTCACACCAGTGTGGTCTAGCTGCTGATTACAGTCACTGGA--GTGGGCGGAGGAT--CCCCAGGATGGGGCCTGGGCAACCTGCTCACGAGCCAGCCTGCTGCCATAGGAGTGTCAGCCTGCAGCCACTATATCAG----CGTTGCCTTCTCCCTGCCTCCCCAAAGTCAGGGGATCTAATAGgtggttaagatcaggggtttggcggtcagacaaagctagatttgaattttgtttctaccccttatcatttgcataattttgggaacatgatttaaactctatgagtta
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30119407 526 -  77216781 AG-AAGGGCCAAGAA----AGTCCCTCATGAATTCCTCTTGGAAGAGATTGGTTTAACGTTAACACCACTTTTCAGTGA----TTTTTTTTT-ATTATCACTTCTGGCTGTTGTGTTTTTAT-TTGTATAGAATTCATATGCTGTTGAT-GCCCTGGGGTGGGTTTGATCCTTCTCGATGAAATATTTGGCAG-----------------------TTTTTTAAATTTC---------------------------------------------------------------------------------------------CAAAATTAAAAG--------ACTGTGTTTGA----------------------------------------------GTGTATTGATAAGCAGAGGTAAGTACTCACACCAGTGTGGTCTAGTTGCTGATTACAGTCACTGGA--ATGGGCGGAGGAT--CCCCTGGGTGGGGCCTGGGCAACCTGCCCACGAGCCGGCCTGCTGCCATAGGAGTGTCAGCCTGCAGCCACTATATCAG----TGTCGCCCTCTCCCTGCCTCCCCAGAATCAGGGAGTCTAATAGGTGGTTAACATTAggggtttggcagtcagacaaagctaggtttgaattttgtttttatgccttatcatttgcataattttgggaacatgatttcaaatctatgagtta
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28032265 528 -  80997621 AG-AAGGGCCAAGAA----AGTCCCTCATGAATTCCTCTTGGAAGAGATTGGTTTAACGTTAACACCACTTTTCAGTGA--TTTTTTTTTTT-ATTATCACTTCTGGCTGTTGTGTTTTTAT-TTGTATAGAATTCATATGCTGTTGAT-GCCCTGGGGTGGGTTTGATCCTTCTCGATGAAATATTTGGCAG-----------------------TTTTTTAAATTTC---------------------------------------------------------------------------------------------CAAAATTAAAAG--------ACTGTGTTTGA----------------------------------------------GTGTATTGATAAGCAGAGGTAAGTACTCACACCAGTGTGGTCTAGTTGCTGATTACAGTCACTGGA--ATGGGCGGAGGAT--CCCCTGGGTGGGGCCTGGGCAACCTGCCCACGAGCCGGCCTGCTGCCATAGGAGTGTCAGCCTGCAGCCACTATATCAG----TGTCGCCCTCTCCCTGCCTCCCCAGAATCAGGGagtctaataggtggttaacattaggggtttggcagtcagacaaagctaggtttgaattttgtttctatgccttatcatttgcataattttgggaacatgatttaaaatctatgagtta
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2088508 527 +  10377808 AG-AAGGGCCAAGAA----AGTCCCTCATGAATTCCTCTTGGAAGAGATTGGTTTAACGTTAACACCACTTTTCAGTGA---TTTTTTTTTT-ATTATCACTTCTGGCTGTTGTGTTTTTAT-TTGTATAGAATTCATATGCTGTTGAT-GCCCTGGGGTGGGTTTGATCCTTCTCGATGAAATATTTGGCAG-----------------------TTTTTTAAATTTC---------------------------------------------------------------------------------------------CAAAATTAAAAG--------ACTGTGTTTGA----------------------------------------------GTGTATTGATAAGCAGAGGTAAGTACTCACACCAGTGTGGTCTAGTTGCTGATTACAGTCACTGGA--ATGGGCGGAGGAT--CCCCTGGGTGGGGCCTGGGCAACCTGCCCACGAGCCGGCCTGCTGCCATAGGAGTGTCAGCCTGCAGCCACTATATCAG----TGTCGCCCTCTCCCTGCCTCCCCAGAATCAGGGagtctaataggtggttaacattaggggtttggcagtcagacaaagctaggtttgaattttgtttctatgccttatcatttgcataattttgggaacatgatttaaaatctatgagtta
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1974277 529 -   8458610 AG-AAGGGCCAAGAA----AGTCCCTCATGAATTCCTCTTGGAAGGGATTGGTTTAACGTTAACACCACTTTTCAGTGA-TTTTTTTTTTTT-ATTATCACTTCTGGCTGTTGTGTTTTTAT-TTGTATAGAATTCATATGCTGTTGAT-GCCCTGGGGTGGGTTTGATCCTTCTTGATGAAATATTTGGAAG-----------------------TTTTTTAAATTTC---------------------------------------------------------------------------------------------CAAAATTAAAAG--------ACTGTGTTTGA----------------------------------------------GTGTATTGATAAGCAGAGGTAAGTACTCACACCAGTGTGGTCTAGTTGCTGATTACAGTCACTGGA--ATGGGCGGAGGAT--CCCCTGGATGGGGCCTGGGCAACATGCCCACGAGCCGGCCTGCTGCCATAGGAGTGTCAGCCTGCAGCCACTATATCAG----TGTCGCCCTCTCCCTGCCTCCCCAGAATCAGGGAGTCTAATAGGTGGTTAACATTAggggtttggcagtcagacaaagctaggtttgaattttgtttctatgtcttatcatttgcataattttgggaacatgatttaaaatctatgagtta
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64918554 527 +  75148670 AG-AAGGGCCAAGAA----AGTCCCTTATGAATTCCTCTTGGAAGGGATTGGTTTAACATTAACACCACTTTTCAGTGA--TTTTTTTTTTT-ATTATCACTTCTGGCTGTTGTGTTTTTAT-TTGTATAGAATTCATATGC-GTTGAT-GCCCTAGGGTGGGTTTGATCCTTCTTGATGAAATATTTGGCAG-----------------------TTTTTTAAATTTC---------------------------------------------------------------------------------------------CAAAATTAAAAG--------ACTGTGTTTGA----------------------------------------------GTGTATTGATAAGCAGAGGTAAGTACTCACACCAGTGTGGTCCAGTTGCTGATTACAGTCACTGGA--ATGGGCGGAGGAT--CCCCTGGATAGGGCCTGGGCAACCAGCCCACGAGCTGGCCTGCTGCCATAGGAGTGTCAGCCTGCAGCCACTATATCAG----TGTCGCCCTCTCCCTGCCTCCCCAAAATCAGGGAGTCTAATAGGTGGTTAAGATCAGGGGTTTGGCGGTCAGACAAAGCTAGGTTTGAATTTTGTTTCTATGCCTTATCATTCGCATAATTTTGGGAACATGATTTAAACTCTATGAGTTA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2158578 526 +   4244037 AG-AAGGGCCAAGAA----AGTCCCTCATGAATTCCTCTTGGAAGGGATTGGTTTAACGTTAACACCACTTTTCAGTGA----TTTTTTTTT-ATTATCACTTCTGGCTGTTGTGTTTTTAT-TTGTATAGAATTCATATGCTGTTGAT-GCCCTGGGGTGGGTTTGATCCTTCTTGATGAAATATTTGGCAG-----------------------TTTTTTAAATTTC---------------------------------------------------------------------------------------------CAAAATTAAAAG--------ACTGTGTTTGA----------------------------------------------GTGTATTGATAAGCAGAGGTAAGTACTCACACCAGTGTGGTCTAGTTGCTGATTACAGTCACTGGA--ATGGGTGGAGGAT--CCCCTGGATGGGGCCTGGGCAACATGCCCACGAGCCGGCCTGCTGCCATGGGAGTGTCAGCCTGCAGCCACTATATCAG----TGTCGCCCTCTCCCTGCCTCCCCAGAATCAGGGagtctaataggtggttaacattaggggtttggcagtcagacaaagctaggtttgaattttgtttctatgccttatcatttgcataattttgggaacatgatttaaaatctatgagtta
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2181585 530 +   4569836 AG-AAGGGCCAAGAA----AGTCCCTCATGAATTCCTCTTGGAAGCGATTGGTTTAACATTAACACCACTTTTCAGTGATTTTTTTTTTTTT-ATTATCACTTCTGGCTGTTGTGTTTTTAT-TTGTATAGAATTCATATGCTGTTGAT-GCCCTAGGATGGGTTTGATCCTTGTTGATGAAATATTTGGCAG-----------------------TTTTTAAAATTTC---------------------------------------------------------------------------------------------CAAAATTAAAAG--------ACTGTGTTTGA----------------------------------------------GTGTATTGATAAGCAGAGGTAAGTACTCACACCAGTGCGGTCTAGTTGCTGATTACAGCCACCAGA--ATGGGCGGAGGAT--CCCCAGGATGGGGCCTGGGCAACCTGCCCACGAGCCGGCCTGCTGCCATAGGAGTGTCAGCCTGCAGCCACTCTATCAG----TGTTGCCCTCTCCCTGCCTCCCCGAAGTCAGGGGGTCTAATAGGTGGTTGagatcaggggtctggcggtcagacaaagctaggtttgaattttgtttctatgccttatcgtttgcataatttggggaacatgatttaaaatctgtgagtta
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46137443 486 - 159171411 AG-AAGGGCCAAGAA----AGTCCCGGATGAATTCCCCTTGGAAGGGATTAATGTAACATTAACACCATTTTATGGTGA------TGTTTTT-ATTATCACTTCTGGCTGTTGTGTTTTTA--TTTTATAGAATTCACACACTGTTGAT-GCCTTAGGGTGGATTTGATCCTTCTTGAGGAAATACTTGGCAG-----------------------TTTTAAAAATTTC---------------------------------------------------------------------------------------------CAAAATGAAAAG--------ACTGTGTTTGG----------------------------------------------GTGTATTGATAAGTAGAGGTAAGTACTCACACCAGTGTGGCTGAGCTGCTGATTACAGTCACCGGA--GTGGGTGGAGGAGCCCCCCTGGATGGGGCCTGGGCAACCTGCTCACCAGCCAGCCTGCT-------------------------------------------GCCCTCTCCCCGCCTCCCCAAAGTCAGGGGGGCTAACAGgtggttaagatgaggggtctggaggtcagacaaagctaggtttgaattttgttttcaccccttatcatttgcataatttggggaacacgatttaaactctatgcgtta
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1847122 484 +   3513951 AG-AAGGGCCAAGAA----AGTTCCGAATGAGTTCCCCTTGGAAGGGATTAATGTAACATTAACACCATTTTACAGGGA---TTTTTTTTTT-ATTATCACTTCTGGCTGTTGTGTTTTTAT-TTTTATAGAATTCATATGCTGTTGAT-GCCTTAGGGTGGGTTTGATCCTTCTTGAAGATATATTTGGCAG-----------------------TTTAAAAAATTTC---------------------------------------------------------------------------------------------CAAAATGAAAAG--------AC--TGTTTGG----------------------------------------------GTGTATTGATAAGCAGAGGTAAGTACTCGCACCAGTGTGGCCGAGCTGCTGATT--AGTCACTGGA--GTGGGCGGAGGAG--CCCCTGGATGGGGCCTGGGCAACCTGCTCACCAGCCAGCCTGCT-------------------------------------------GCCCTCTCCCTGCCTCCCCAAAGTCAGGGGCTCTAATAGgtggttaagaggaggtgtttgaaggtcagacaaagctaggtttgaattttgtttctaccccttaacatttgcatcatttggggaacatcatttaaactctgtgcgtta
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1898239 487 +   1920343 AGAAAGGGCCAAGAA----AGTCCCGAATGAATTCCCCTTGGAAGGGATTAATGTCACATTAACACCATTTTATGGGGA-----TGTTTTTT-ATTATCACTTCTGGCTGTTGTGTTTTTAT-TTTTACAGAATTCATATGCTGTTGAT-GCTTTAGGGTGGGTTTGATCCTTCTTGAGGAAATACTTGGCAG-----------------------TTTTAAAAGTTTC---------------------------------------------------------------------------------------------CAAAATGAAAAG--------ACTGTGTTTGG----------------------------------------------GTGTATTGATAAGTAGAGGTAAGTACTCACACCAGTGTGGCCGAGCTGCTGATTACAGTCACTCGG--GTGGGAGGAGCAG--CCCCTGGATGGGGCCTGGGCAACCTGCCCACCAGCCAGCCTGCT-------------------------------------------GCCCTGCCCCCGCCTCCCCAAAGTCAGGGGGTCTAAAAGgtagttaagatgaggggtttggaggtcagacaaagctaggtttgaattttgcttctaccccttatcatttgcataatttggggaacatgatttaaactctgtgagtta
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7012165 474 -   7032639 AG-AAGGGCCAAGAA----AGTCCCGAATGAATTCCCCTTGGAAGCGATTAATGTAACATTAACACCATTTTACAGGGA-----TGTTTTTT-ATTATCACTTTTATCTGTTGTGTTTTTAT-TTTTATAGAATTCATATGCTGTTGAT-GCCTTAGGGTGGGTTTGATCCTTCTTGAGGAAATACTTGGCAG-----------------------TTTAAAAAACTTC---------------------------------------------------------------------------------------------CAAAATGAAAAG--------ACTGTGTTTGG----------------------------------------------GTGTATTGATAAATAGAGGTAAATACTCACACCAGTGTGGCCGAACTGCTGATTACAGTCACTGGAGTGTGGGTTGGGGAG--CCCCTGGATGGGGCCTGGGCAACCTGCTCACCAGCCAGCCTGCT-------------------------------------------GCCCTCTCCTCGCCTCCCCAAAGTCAGGGGGTCTAATAGGTGGTTAAGATGAGGGGTTTGGAG--------------GGTTTGAATTTTGTTTCTACCCCTTATCATTTGCATAATTTGGGGAACATGATTTAAACTCTATGAGTTA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22839669 477 +  28711273 AA-AAGGATCAGGAT----AGCCCATTGTGAACTCCTCTTGGAAGGAGTTGACTTAATACTAAATCCACTTTTCAGTGA------TGTCTTT-CTTTTC-CTTCTAGAAGATGTGTTTTTATACTTAACAGAATTCATATATTGTTGGC-TCCATAGACTGAGTTTAATACATCTTGGTGAAATATTTTGCAG-----------------------TTTTAAAAATTTC---------------------------------------------------------------------------------------------C-AAATTATAAG--------ATTGTCCTTCG----------------------------------------------GAGTATTGATAAGGGGAGGTAAGTCCTCACACCAGTTTGATCCAGCTGTTGACAGCAGTCACTGAA--GGGGGCAGATGAT---CCCTACCTGGCATCAGGGTGACCTACTCCTAAGCC-TTCAATCACCGTGGGGAAGGC--------------------------------------------CTCCAACATGAGGAGACCTAACAGATGAGTAAGTTcagaggtttgggggtcag-cagagctaggtttgcatcttgttcctacccctt---aattgcacagtttttgaaacatgatttaaagcctctgagtta
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22102228 639 - 122082543 AG-ACAGGTCCAGAG----AGAGCATCACAAAGTCTTCTTGTAAGAGATTGCTTGAACTTTAAAA-TACTTTGCAGAGA----------TGA-CCTAGTATTTCTGGCTGTTGAAGTTTTAT-ATTTGTGAGATTCGTAAGCTGTTGATCACCATTTTGTGAGTTTAATACTCCTTCATGAAATATTTGAAGGTTTGTTTTACTTCCCCAGAAttttttgagaagtttctcataccttggtgcaggctgaactggggctcactatgcagcccacactgggcttgaacttacagcgatccttctgcctcagcttcccaaatatcagaattagaagggtaagccactatgcttgactAAATGTTTATATTTTAAATTTCCCAATGATAAGATCATCGTTGGGTGTATTACTAAGTAGAGGTAAACATCCA-ACTCCTTTGATCCAGCTAACGTCA-----CACTGCA--CGGGGGAGATGAT--CCCCGACACAGGGCCTGGACATGCTGCTTATGGGCCAGCC--CTGCTGTGTGAATGTCATCCAACCTCT-CTGTACCTGCTCCTAGTGCTCTCTCTCTGTACCTCC----TCGGGAGATCCAA---------ATGAGCAGAGATTTTG-GGACCGATGGCTCTGGATTCGAATTTTGTTTTT--------------------------TATCATAATTTAAACTTTG------A
i mm10.chr11                C 0 C 0
s canFam3.chr9              21452983 510 +  61074082 GG-AAGAATTCGGAAAACCAGTGCCTCATAAATCCCTCTTGGAAGAGGGTGATTTAACCTTGAAATTACTTTGCAGTGA------TGTCCTT-A-TATCACTTTCAGTTGTTGCAGTTTTAT-ATTTATAGAACTCATACACTGTGAAC-TCCATAGCATGAATTTAATCCTT---GGCAAAATATTTTGCAG-----------------------TTATTAAAAGTTC---------------------------------------------------------------------------------------------C-AAATTAAAAG--------ATTGTATTTGT----------------------------------------------GTATATGGCTAAGTAGAGG-AGGTTT-----CCAGTTTAATCTAGCTGATGATTCCAGTTATGGGA--GTGGACAAATGGT--CCCCATCATGAGGCCTGGACCATAGGCCCATGAATCAGTGCACTGCTGTATAAATGTCAATCCTCTATCACTATAT-------TACTGTTTTTTTCCCTCCACTCCTAAGTCAGGAGGTCTAAGAGATAATTaagaccagaagctttggggtcagcccaaactaggtttggatcttatttcaaccatttattacttgcataattctgggaacaggatttaaactctctga----
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            455853 495 -    852752 AG-AAGGAGCAGGAA----AGCCCCCCAGGAATTCCTCACAGAAGAGCTTGATTTAATCCTAAAACCACTTTGCAATGA------TGCCCTT-ATT-TTGCTTTTGGCTGCTACATTTTTAT-ATGTACAGATGTCTTGTACCGTTGAG-GCCATAGTGTGAGTTCAATCCTTCTTGGCCAGATATTTTGTGG-----------------------TGTTTTAAATTCC---------------------------------------------------------------------------------------------C-GAATTAAAAT---------TTATCTTTGG----------------------------------------------GTGCACT----------GGTAAGTTCTCATGCCAGC---------TTGATAATTACCGTCCCTGGA--GTGGGAAGTTGGT--CCCCAACGTGGGGTCTGGGCGGCCTGCCTGTCAGCCAGCCCACTGTTAAGCAAGCAGCAGCCTGCAGTGG-TATATTAG----AGTCACACACAGC---CCTCCCCCAAGTTAGAAggtctagtagatggttaagatcataggtttgggggtctgataaacctaggcttgtgtcttgtttct-cctcccattacttgcataattttgggaatgtga--caaactctctgaatta
i dasNov3.JH570468          C 0 C 0

a score=59931.000000
s hg38.chr17_JH159148v1_alt     3401 4 +     88070 gttt
s panTro5.chr17             16325586 4 +  83181570 gttt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16230472 4 +  83442489 gttt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4066042 4 +   4267968 GTTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2045894 4 -   2193130 gttt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30119933 4 -  77216781 gttt
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28032793 4 -  80997621 gttt
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2089035 4 +  10377808 gttt
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1974806 4 -   8458610 gttt
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64919081 4 +  75148670 GTTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2159104 4 +   4244037 gttt
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2182115 4 +   4569836 gttt
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46137929 4 - 159171411 gttt
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1847606 4 +   3513951 gttt
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1898726 4 +   1920343 gttt
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7012639 4 -   7032639 GTTT
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22840146 4 +  28711273 gttA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22102867 4 - 122082543 GTTT
i mm10.chr11                C 0 C 0
s dasNov3.JH570468            456348 4 -    852752 gttt
i dasNov3.JH570468          C 0 C 0
e canFam3.chr9              21453493 0 +  61074082 C

a score=109151.000000
s hg38.chr17_JH159148v1_alt     3405 10 +     88070 tgcca---cttct
s panTro5.chr17             16325590 10 +  83181570 tgcca---cttct
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16230476 10 +  83442489 tgcca---cttct
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4066046 10 +   4267968 TGCCA---CTTCC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2045898 13 -   2193130 TGCCActtcttct
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30119937 13 -  77216781 TGCCACTTCTTCC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28032797 13 -  80997621 TGCCACTTCTTCC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2089039 13 +  10377808 TGCCACTTCTTCC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1974810 13 -   8458610 TGCCACTTCTTCC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64919085 13 +  75148670 TGCCACTTCTTCC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2159108 13 +   4244037 TGCCACTTCTTCT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2182119 13 +   4569836 AGCCACTTCTTCT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46137933 13 - 159171411 TGCCACTTCTTCT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1847610 13 +   3513951 TGCCGCTTCTTCT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1898730 13 +   1920343 TGCCACTTCTTCT
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7012643 13 -   7032639 TGCCACTTCTTCT
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22840150 13 +  28711273 TGCCACTTTTTAT
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            456352 10 -    852752 tgccacatct---
i dasNov3.JH570468          C 0 I 542
e mm10.chr11                22102871  0 - 122082543 C
e canFam3.chr9              21453493  0 +  61074082 C

a score=1339325.000000
s hg38.chr17_JH159148v1_alt     3415 138 +     88070 gtTTTCTTCTTTTCTGTTCTAAAAAAATCTTGagaggaaccaatttgggggagattttaagcttcctaaaagggccaatgaagttttatattttaatcttaaCTTTGTTTTAAACCTGGTTTCT-TCTTTATTTATTAC
s panTro5.chr17             16325600 138 +  83181570 gtTTTTTTCTTTTCTGTTCTAAAAAAATCTTGagaggaaccaatttggggcagattttaagcttcctaaaagggccaatgaagttttatattttaatcttaaCTTTGTTTTAAACCTGGTTTCT-TCTttatttattac
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16230486 137 +  83442489 gtTTT-TTCTTTTCTGTTCTAAAAAAATCTTGagaggaaccaatttggggcagattttaagcttcctaaaagggccaatgaagttttatattttaatcttaaCTTTGTTTTAAACCTGGTTTCT-TCTTTATTTATTAC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4066056 138 +   4267968 TTTTTTTTCTTTTCTGTTCTAAAAAaatcttgagaggagccaatttgggggagattttaagcttcctaaaagggccaatgaagttttatattttaatcttaacTTTGTTTTAAACCTGGTTTCT-TCTTTATTTATTAC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2045911 138 -   2193130 gtttttttcttttctgttctAAAAACAtcttgagaggaaccaatttgggggagattttaagcttcctaaaaaggccaatgaagttttacattttaatcttaacTTCGTTTTAAACCTGGTTTCT-TCTTTATTTATTGC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30119950 138 -  77216781 GGTTTTTTCTTTTCTGTTCTAAAAAAATATTGagaggaaccaattagggggagattttaggcttcctaaaaaggccaatgaagttttacattttAATATTAACTTCGTTTTAAACCTGGTTTCT-TCTGTATTTATTAC
i rheMac8.chr16             C 0 I 1
s macFas5.chr16             28032810 138 -  80997621 AGTTTTTTCTTTTCTGTTCTAAAAAaatattgagaggaaccaatttgggggagattttaggcttcctaaaaaggccaatgaagttttacattttAATATTAACTTCGTTTTAAACCTGGTTTCT-TCTGTATTTATTAC
i macFas5.chr16             C 0 I 1
s macNem1.NW_012014910v1     2089052 138 +  10377808 GGTTTTTTCTTTTCTGTTCTAAAAAaatattgagaggaaccaatttgggggagattttaggcttcctaaaaaggccaatgaagttttacattttAATATTAACTTCATTTTAAACCTGGtttct-tctgtatttattac
i macNem1.NW_012014910v1    C 0 I 362
s cerAty1.NW_012006043v1     1974823 138 -   8458610 GGTTTTTTCTTTTCTGTTCTAAAAAaatactgagaagaaccaatttgggggagattttaggcttcctaaaaaggccaatgaagttttacattttAATATTAACTTTGTTTTAAACCTGGTTTCT-TCTGCATTTATTAC
i cerAty1.NW_012006043v1    C 0 I 2
s chlSab2.chr16             64919098 138 +  75148670 GGTTTTTTCTTTTCTGTTCTAAAAAAATATTGagaggaaccaatttgggggagattttaggcttcctaaaaaggccaatgaagttttacattttAATATTAACTTCATTTTAAACCTGGTTTCT-TCTGTATTTATTAC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2159121 137 +   4244037 GG-TTTTTCTTTCCTGTTCTAAAAAaatattgagaggaaccaatttgggggagattttaggcttcctgaaaaggccaatgaagttttacattttAATATTAACTTTGTTTTAAACCTGGTTTCT-TCTGCATTTATTAC
i manLeu1.NW_012106252v1    C 0 I 8
s colAng1.NW_012122154v1     2182132 138 +   4569836 GGTTTTTTCTTTTCTGTTCTAAACAAATATTGagaggaaccaatttgggggagattttaggcttcctaaaaaggccaatgaagttttacattttAATATTAACTTCATTTTAAACCTGGTTTCT-TCTTTATTTATTAC
i colAng1.NW_012122154v1    C 0 I 1
s calJac3.chr5              46137946 137 - 159171411 GCTTTTTTCTTTTCTGTTTTAAAAaactcttgagaagaaccaattt-ggggagattctaagcttcctaaaacggccagtgaagttttacattttgatcttagcTTCGTTTTAAACCTGGTTTCT-GCTTTACTTATCAC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1847623 136 +   3513951 GCTTTTATCTTT--TGTTTTTAAAaactcttgaaaagaaccaatttgggggagattctaagcttcctaaaaaggccaatgaagttttacattttaatcttagcTTCGTTTTAAACCTGGTTTCT-GCTTTATTTATCAC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1898743 137 +   1920343 GCTTTTATCTTTTCTGTTTTTAAAaactcttgagaagaaccaattt-ggggagattctaagcttcctaaaaaggccaatgaagttttacattttaatcttagcTTCATTTTAAACCTGGTTTCT-GCTTTATTTATCAC
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7012656 136 -   7032639 GCTTTTTTCTTTTCTGTTTTAAAAaactcttgagaagaaccaattt-ggggagattctaagcttcctaaaaaggccaatgaagttttacattttaatcttagcTTCATTTT-AACCTGGTTTCt-gcttaatttatcac
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22840163 118 +  28711273 GATTTCTGCTTTTATTTT------GAGTCTCAAGAAAAGCTAATGT-GAGGAGATTATAAGCTTCCCAAAA-GGTCAACA-------------TAGCATTAACTGTGTTTTAAAACTGATGTCTGTTTTTATTTGATTT
i otoGar3.GL873537          C 0 C 0
e mm10.chr11                22102871   0 - 122082543 C
e canFam3.chr9              21453493   0 +  61074082 C
e dasNov3.JH570468            456362 542 -    852752 I

a score=49560.000000
s hg38.chr17_JH159148v1_alt     3553 5 +     88070 TTTTT
s panTro5.chr17             16325738 5 +  83181570 ttttt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16230623 5 +  83442489 TTTTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4066194 5 +   4267968 TTTCT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2046049 5 -   2193130 TTTTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30120089 5 -  77216781 TTTTT
i rheMac8.chr16             I 1 C 0
s macFas5.chr16             28032949 5 -  80997621 TTTTT
i macFas5.chr16             I 1 C 0
s cerAty1.NW_012006043v1     1974963 5 -   8458610 TTTTT
i cerAty1.NW_012006043v1    I 2 C 0
s chlSab2.chr16             64919236 5 +  75148670 TTTTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2159266 5 +   4244037 TTTTT
i manLeu1.NW_012106252v1    I 8 C 0
s colAng1.NW_012122154v1     2182271 5 +   4569836 TTTTT
i colAng1.NW_012122154v1    I 1 C 0
s calJac3.chr5              46138083 5 - 159171411 TTTTT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1847759 5 +   3513951 TTTTT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1898880 5 +   1920343 TTTTT
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7012792 5 -   7032639 ttttt
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22840281 5 +  28711273 TTATT
i otoGar3.GL873537          C 0 C 0
e mm10.chr11                22102871 0 - 122082543 C
e canFam3.chr9              21453493 0 +  61074082 C
e dasNov3.JH570468            456362 542 -    852752 I
e macNem1.NW_012014910v1     2089190 362 +  10377808 I

a score=-17776.000000
s hg38.chr17_JH159148v1_alt     3558 4 +     88070 -Ttt--a
s panTro5.chr17             16325743 4 +  83181570 -ttt--a
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16230628 4 +  83442489 -Ttt--a
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4066199 3 +   4267968 -TTT---
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2046054 6 -   2193130 -TTTtta
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30120094 3 -  77216781 -TTT---
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28032954 3 -  80997621 -TTT---
i macFas5.chr16             C 0 C 0
s cerAty1.NW_012006043v1     1974968 3 -   8458610 -TTT---
i cerAty1.NW_012006043v1    C 0 I 1
s chlSab2.chr16             64919241 1 +  75148670 -T-----
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2159271 1 +   4244037 -T-----
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2182276 3 +   4569836 -TTT---
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46138088 3 - 159171411 -TTC---
i calJac3.chr5              C 0 I 1
s saiBol1.JH378271           1847764 3 +   3513951 -TTt---
i saiBol1.JH378271          C 0 I 3
s cebCap1.NW_016107730v1     1898885 3 +   1920343 -TTT---
i cebCap1.NW_016107730v1    C 0 I 2
s aotNan1.NW_018502359v1     7012797 1 -   7032639 -t-----
i aotNan1.NW_018502359v1    C 0 I 2
s otoGar3.GL873537          22840286 3 +  28711273 -TTT---
i otoGar3.GL873537          C 0 I 2
s canFam3.chr9              21453493 4 +  61074082 cttg---
i canFam3.chr9              C 0 C 0
e mm10.chr11                22102871 0 - 122082543 C
e dasNov3.JH570468            456362 542 -    852752 I
e macNem1.NW_012014910v1     2089190 362 +  10377808 I

a score=2100.000000
s hg38.chr17_JH159148v1_alt     3562 1 +     88070 g
s panTro5.chr17             16325747 1 +  83181570 g
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16230632 1 +  83442489 g
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4066202 1 +   4267968 G
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2046060 1 -   2193130 g
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s mm10.chr11                22102871 1 - 122082543 G
i mm10.chr11                C 0 C 0
s canFam3.chr9              21453497 1 +  61074082 g
i canFam3.chr9              C 0 C 0
e aotNan1.NW_018502359v1     7012798 2 -   7032639 I
e cebCap1.NW_016107730v1     1898888 2 +   1920343 I
e manLeu1.NW_012106252v1     2159272 0 +   4244037 C
e dasNov3.JH570468            456362 542 -    852752 I
e otoGar3.GL873537          22840289 2 +  28711273 I
e saiBol1.JH378271           1847767 3 +   3513951 I
e calJac3.chr5              46138091 1 - 159171411 I
e colAng1.NW_012122154v1     2182279 0 +   4569836 C
e chlSab2.chr16             64919242 0 +  75148670 C
e cerAty1.NW_012006043v1     1974971 1 -   8458610 I
e macNem1.NW_012014910v1     2089190 362 +  10377808 I
e macFas5.chr16             28032957 0 -  80997621 C
e rheMac8.chr16             30120097 0 -  77216781 C

a score=3633775.000000
s hg38.chr17_JH159148v1_alt     3563 312 +     88070 ttttgccacttctaacatagtgatgacaattatactt----a----ctgaagtcattgtgaggatccagtg-aaaaatgcagccaaggacttgatc--t------agtaactatgcaataaatgAAAGCCATTTCT------ATTGTT-ATTATTAGTAATAGTACTAGTAAA--CAAGTTTCAGGAATGATAAATGGGAAGGTTTTAAAAAGAGGTAGAGGCACTTAAGTGTCCCTGGGTTCCTTGGACTAATTTTCCATTTCCCGTCT------TG-ACATC-CTCTC-CCCAAACTGGGTCAAGGCTTCATTTC-TGAT----TG---AATGGTGCAAAGCTGCATTCCTGG
s panTro5.chr17             16325748 312 +  83181570 ttttgccacttctaacatagtgatgacaattatactt----a----ctgaagtcattgtgaggattcagtg-gaaaatgcagccaaggacttgatc--t------agtaactatgcaataaatgaaagccatttct------attgtt-ATTATTAGTAATAGTACTAGTAAA--CAAGTTTCAGGAATGCTAAATGGGAAGGTTTTAAAAAGAGGTAGAGGCACTTAAGTGTCCCTGGGTTCCGTGGACTAATTTTCCATTTCCCATCT------TG-ACATC-CTCTC-CCCAAACTGGGTCAAGGCTTCATTTC-TGAT----TG---AATGGTGCAAAGCTGCATTCCTGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16230633 312 +  83442489 ttttgccacttctaacatagtgatgacaattatactt----a----ctgaagtcattgtgaggattcagtg-gaaaatgcagccaaggacttgatc--t------agtaactatgcaataaatgAAAGCCATTTCT------ATTGTT-ATTATTAGTAATAGTACTAGTAAA--CAAGTTTCAGGAATGCTAAATGGGAAGGTTTTAAAAAGAGGTAGAGGCACTTAAGTGTCCCTGGGTTCCGTGGACTAATTTTCCATTTCCCATCT------TG-ACATC-CTCTC-CCCAAACTGGGTCAAGGCTTCATTTC-TGAT----TG---AATGGTGCAAAGCTGCATTCCTGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4066203 312 +   4267968 TTTTGCCACTTCTAACATAGTGATGACAATTATACTT----A----CTGAAGTCATTGTGAGGATTCAGTG-AAAAATGCAGCCAAGGACTTGATC--T------AGTAACTATGCAATAAATGAAAGCCATTTCT------ATTGTT-ATTATTAGTAATAGTACTAGTAAA--CAAGTTTCAGGAATGCTAAATGGGAAGGTTTTAAAAAGAGGTAGAGGCACTTAAGTGTCCCTGGGTTCTTTGGACTAATTTTCCATTTCCCATCT------TG-ACATC-CTCTC-CCCAAACTGGGTCAAGGCTTCATTTC-TGAT----TG---AATGGTGCAAAGCTGCATTCCTGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2046061 311 -   2193130 ttttgccacttctaacatagtgatga-aagtatactt----a----ctaaagtcattgtgaggattcaatg-aaaaatgcagtcaaggacttgatc--t------agtaactatgcaataaatgAAAGCCATTTCT------ATTGTT-ATTATTAGTAATAGTACTAGTAAA--CAAGTTTCAGGAATGCTAAATGGGAAGGTTTTAAAAAGAGGTAGAGGCACTTAAGTGTCCCTGGGTTCCATGGACTAATTTTCTATTCCCCATCT------TG-ACACC-CCCTC-CCCAAACTGGGTCAAGTCTTCATTTC-TGAT----TG---AATGGTGCAAAGCTGCATTCCTGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30120097 311 -  77216781 ttttgccacttctaacatagtgatgacaattatactt----a----ctaaagtcattgtgaggatccaatg-aaaaatgcagtcaagggcttggtc--t------agtaactatgcaataaatgAAAGCCATTTCT------ATTGTT-ATTATTAGTAATAGTAC-AGTAAA--CAAGTTTCAGGAATGCTAAATGGGAAGGTTTTAAAAAGAGGTGGAGACACTTAAGTGTCCCTGGGTTCCATGGACTAATTTTCCATTTCCCGTCT------TG-ACACC-CCCTC-CCCAAACTGGGTCAAGGCTTCATTTC-TGAT----TG---AACAGCGCAAAGCTGCGTTCCTGG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28032957 311 -  80997621 ttttgccacttctaacatagtgatgacaattatactt----a----ctaaagtcattgtgaggatccaatg-aaaaatgcagtcaagggcttggtc--t------agtaactatgcaataaatgaaagccatttct------attgtt-ATTATTAGTAATAGTAC-AGTAAA--CAAGTTTCAGGAATGCTAAATGGGAAGGTTTTAAAAAGAGGTGGAGACACTTAAGTGTCCCTGGGTTCCATGGACTAATTTTCCATTTCCCGTCT------TG-ACACC-CCCTC-CCCAAACTGGGTCAAGGCTTCATTTC-TGAT----TG---AACAGCGCAAAGCTGCGTTCCTGG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2089552 311 +  10377808 ttttgccacttctaacatagtgatgacaattatactt----a----ctaaagtcattgtgaggatccaatg-aaaaatgcagtcaagggcttggtc--t------agtaactatgcaataaatgaaagccatttct------attgtt-attattAGTAATAGTAC-AGTAAA--CAAGTTTCAGGAATGCTAAATGGGAAGGTTTTAAAAAGAGGTGGAGACACTTAAGTGTCCCTGGGTTCCATGGACTAATTTTCCATTTCCCGTCT------TG-ACACC-CCCTC-CCCAAACTGGGTCAAGGCTTCATTTC-TGAT----TG---AACAGCGCAAAGCTGCATTCCTGG
i macNem1.NW_012014910v1    I 362 C 0
s cerAty1.NW_012006043v1     1974972 311 -   8458610 ttttgccacttctaacatagtgatgacaattatactt----a----ctaaagtcattgtgaggatccaatg-aaaaatgcagtcaagggcttggtc--t------agtaactatgcaataaatgAAAGCCATTTCT------ATTGTT-ATTATTAGTAATAGTAC-AGTAAA--CAAGTTTCAGGAATGCTAAATGGGAAGGTTTTAAAAAGAGGTGGAGACACTTAAGTGTCCCTGGGTTCCAGGGACTAATTTTCCATTTCCCGTCT------TG-ACACC-CCCTC-CCCAAACTGGGTCAAGGCTTCATTTC-TGAT----TG---AACAGCGCAAAGCTGCGTTCCTGG
i cerAty1.NW_012006043v1    I 1 C 0
s chlSab2.chr16             64919242 311 +  75148670 TTTTGCCACTTCTAGCATAGTGATGACAATTATACTT----A----CAAAAGTCATTGTGAGGATCCAATG-AAAAATGCAGTCAAGGACTTGGTC--T------AGTAACTATGCAATAAATGAAAGTAATTTCT------ATTGTT-ATTATTAGTAATAGTAC-AGTAAA--CAAGTTTCAGGAATGCTAAATGGGAAGGTTTTAAAAAGAGGTGGAGGCACTTAAGTGTCCCTGGGTTCCATGGACTAATTTTCCATTTCCCATCT------TG-ACACC-CCCTC-CCCAAACTGGGTCAAGGCTTCATTTC-TGAT----TG---AACAGCGCAAAGCTGCGTTCCTGG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2159272 311 +   4244037 ttttgccacttctaacatagtgatgacaattatacgt----a----ctaaagtcattgtgaggatccaatg-aaaaatgcagtcaagggcttggtc--t------agtaactatgcaataaatgaaagccatttct------attgtt-ATTATTAGTAATAGTAC-AGTAAA--CAAGTTTCAGGAATGCTAAATGGGAAGGTTTTAAAAAGAGGTGGAGGCACTTAAGTGTCCCTGGGTTCTATGGACTAATTTTCCATTTCCCGTCT------TG-ACACC-CCCTC-CCCAAACTGGGTCAAGGCTTCATTTC-TGAT----TG---AACAGCGCAAAGCTGCGTTTCTGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2182279 311 +   4569836 ttttgccacttctaacatagtgatgacaattatactt----a----ctaaagtcattgtgaggatccaatg-aaaaatgcagtcaagggcttggtc--t------agtaactatgtaataaatgAAAGCCATTTCT------ATTGTT-ATTATTAGTAATAGTAC-AGTAAA--CAAGTTTCAGGAACGCTAAATGGGAAGGTTTTAAAAAGAGGTGGAGGCACTTAAGTGTCCCTGGGTTCCATGGACTAATTTTCCATTTCCCTTCT------TG-ACAAC-CCCTC-CCCAAACTGGGTCAAGGCTTCATTTC-TGAT----TG---AACGGCGCAAAGCTGCATTCCTGG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46138092 317 - 159171411 TCTTGCCGCctctaacatagtgatggcaattatactt----a----ctaaagctactgtgagggttcaatgaaaaaatgcggtcaagggcttggtc--t------agtaaccaggcaATAAATGAAAGCCATTTCT------ATTGTT-AATAATAGCAACAGTACTAGTAAA--TACGTTTCAAGAATGCTAAATGGGAAGGTTTTAAAAAGAGGTGGAGGCTCATAAGTGTCCCTGGGTTCCATGAACTAATTTTCCATTTCCCATCT------TG-ACACC-CTCTT-CCCAAACTGGGTCAGGGCTTCATTTC-TGACTGTCTG---AATGGTGCAAAGCTGCATTCCTGG
i calJac3.chr5              I 1 C 0
s saiBol1.JH378271           1847770 313 +   3513951 ttttgccacttctaacatagtgatggcagttacactt----a----ctaaagttactgtgaggattcaatg-aaaagtgcagtcgagggcttggtc--t------ggtagctatgcaataaacAAAAGCCGTTTCT------ATTGT----TATTAGCGACGGTGCTGGTAAA--TAAGTTTCAGGAATGCTAAATGGGAAGGTTTTAAAAAGAGGTGGAGGCACTTAAGTGTCCTTGGGTTCCATGAACTAATTTTCCATTTCCCATCT------TG-ACACC-CTCTC-CCCAAACTGGGTCAGAGCTTCATTTC-TGATTGTCTG---AATGGTGCAAAGCTGCATTCCTGG
i saiBol1.JH378271          I 3 C 0
s cebCap1.NW_016107730v1     1898890 313 +   1920343 ttttgccacttctaacatagtgatggcagttatactt----a----ctaaagttattgtgaggattcaatg-aaaagtgcagtcaagggcttggtc--t------agtaactatgcaataaatgAAAGCCATTTCT------ATTGT----TATTAGCGACAGTACTAGTAAA--TAAGTTTCAGGAATGCTAAATGGGAAGGTTTTAAAAAGCGGTGGAGGCACTTAAGTGTCCTTGGGTTCCATGAACTAATTTTCCATTTCCCATCT------TG-ACACC-CTCTC-CCCAAACTGGGTCAGAGCTTCATTTC-TGATTGTCTG---AATGGTGCAAAGCTGCATTCTTGG
i cebCap1.NW_016107730v1    I 2 C 0
s aotNan1.NW_018502359v1     7012800 315 -   7032639 ttttgccacttctaacgtagtgatggcaattatactt----a----ctaaagttattgtgaggattcaatg-aaaaatgcagtcaagggcttgatc--t------agtaactatgcaataaAT-AAAGCCATTTCT------ATTGTT-ATTATTAGCGACAGTACTAGTAAA--TAAGTTTCAGGAATGCTAAACGGGAAGGTTTTAAAAAGAAGTGGAGGCTCTTAAGTGTCCCTGGGTTCCATGAACTAATTTTCCATTTCCCATCT------TG-ACACC-CTCTC-CCCAAACTGGGTCAGGGCTTCATTTC-TGACTGTCTG---AATGGTGCAAAGCTGCATTCCTGG
i aotNan1.NW_018502359v1    I 2 C 0
s otoGar3.GL873537          22840291 317 +  28711273 CTTTGCCACTTCTAACATAGCAATGACAACTACACTT-------------GGTCATGGGGAGTATTTGATG-AAAAATGCCGTCAAGGGCTTGGTCTGT------AGTGAAAATGCAATGAATAAAAGCCATTACG------ATTATT-ATTAGTAGTAATGGTATCAGGAAAGTTAGGTTTAAGGAAAGGCAATTGGAAAGGTTCCAGAAAGAAGTGGAGGCACTTTAGTGTCCATGAGTTCCACTGAATGATTTTTTGGTGCCCATCTC-----CA-ACACT-CCCCCGTTCCAACTGGGTCAGAGCTTCATTTCTTGGC----TGTCTGATGGCCCAGGACCACATTCCTGG
i otoGar3.GL873537          I 2 C 0
s mm10.chr11                22102872 282 - 122082543 TCTTGTTACTTTTAAAATAGGGATGTCAGCCATACTTCCTAG----CTAAGGTCAT--------TTCAAGG-A-------------------------T------GGTAGCTGTGC---TAAGGGAGGTCATTACA------GCTGTTAATTGTTGGCAGCAACTC-CGGAGT--TAAGTTCAA--AATGCTGA-TGTGAAGATTCTAGGGAGAGGGGGACACGCATAAACATTCTTGCGGTCCACAGACTAGTTTTCTGTTCTTCATTTTTGATATC-ACACC-TTCTC-TTTGAATACTGTCAGCACTCCACCGC---AT----CT---GATGGCACAGAACTGCG-TCCTGG
i mm10.chr11                C 0 C 0
s canFam3.chr9              21453498 335 +  61074082 ttttgttacctttaacacagtaccaagaattatacct----gctacctaaggtcgttgcaag-atttaatg-aaaaatgcagtcaaggacttgatg--tatagtaagttactataaatggaatggaagccattactactTCAATTACT-ATTATTCTTAGTGTTAATAATAAAATTGAGTTTCAGGAAAACCAAATGGGAAGATTCTA-AAAGAGGTGGAGACATTGGAGTGCCCTTAGGATGCACTGACTGATTTTCTGTTTGCCATCT------CGCACATCACCCTC-TTTCAACTGGGTCAAGGCTTCGTTTCCTGATTCTCTA---AATGGTGCAGAACTGCATTCCTGG
i canFam3.chr9              C 0 C 0
e dasNov3.JH570468            456362 542 -    852752 I

a score=22517915.000000
s hg38.chr17_JH159148v1_alt     3875 1597 +     88070 AGGAACAGCAG--------GGCCACTCTGGCTTGGCAGAGGCCTCCTGATGAAAGGTTAGTGCCAGGAAAGGCCTGCTTCAGTGAGGCTGGAGAGCAACCTGTAAAAGAGACAGCTCATCCAAGAGCAGGAGCAGTGTCAACGAATCCAAATGCAGCGCAGAAAACTCCCGACTCAACA-GACACCTTTTCAAAGTTGA---AACATC-TCCCAGGCTCCTGAAGCCTGCTAATCAGATGTTTGCATGCAAATGAGTAAAAACAATAACAAGGAAAGATGCTGCATGGCGTGCCAACA--CCCC-TAGTGAAGGACTATAAAAGCCCCTCTGTATCGGATGTCTTTCCAATGCAGGTATACTGAGCTTGCAACTTCCCAGCAAGGTCAGCACCAGCACCATGGCAGACGGCTGTTGTCCTGGAAACACCACAGCCATTCCAGCTGTGCCCACCATCACCACATACCCAGTTAAAGGTGGATTTCGACATGCTCTCTGTTTGCCTAGTTCCTGCCACAGCAGAATGTGGCAACTGGTCACATGCCAAGAAAGCTGTCAGCCATCCATTGGTGCCCCAAGTGGCTGTGATCCTGCTTCGTGTCAACCTACCCGCCTTCCAGCAACGTCTTGTGTGGGTTTTGTTTGCCAACCTATGTGCTCCCACGCAGCCTGCTATCAGTCTGGCACTGGTCAGTCTCCTTGTCTGGTTAGCTCATGTCAGCCATCCTGCTCGGAATCTACTTGTTGTCAGGAAAAGTGCTGCGATGCCAGTCCCTGCCAGCAAAGCTCCTGCCAGGAATCTGTCTGCATGTCTGGATCATGTCAGGCAGCTTGTGGCCAATCAGTCTGCTGTGATGCTGGATCCTGCCAGCCATCCTGCTCTGAAGTGACCTCCTGTCCGGAAACTTCTTGCCTACCAACCATCTGTACAGCTAGTCCATGCCAACCAACTTGGTGCCAAGGAAGTTCATGTCAACCCGTCAGTGGTGAAGGCCAGCCCTGTAAATCAACTTATTATCAACCCATCTGCTATATTTTCAAGCCTTGCCAATCAGCCCTCTACATGCCTGTTCCCTGCCAGCCATCGACTTGTGTGTTCAGTTCTTGCAATACTACTTGCTGTGT-GCCTTCCCATTGCCAGCCACCTCACTGCCAACTGGTTCCTTCCACATGCTTCATCTACCAGCCAGTGGCTAACTGCCAGGCCCCTTGTTCCACAAAGAACTGTTGCAAACCAGCTTCTTGTGACACTGTGATTTCTGGCCAACCAACTTGTGATGGACCCCCTTCCTATAACCAGAGTGGCTGCA---------------AAT---------------CAGCTTGCTGTGTGACTGGTTTAGGCACATCACCCAGTAGTGGCTC------------------------------------------CAATTGCT-----------------------T------------------------------------------GCCG-------------------ACTTCATGCCAACCCAGCTGTGAGTCCAGCTTCTGCAAGGCAACACTTTGTTAATGGAGCCCTCTTCACACCTCCTCTGAGGGTCTGCGGCTGTCTATAAATGCATAGCCATCCC-TGGGTGC----CTGCCTCC-------CACCGA----------------GTACAAATGCTGCCTGCTTTCTAACTTTACCCTGATTCCACCTTCACATTCTCTCCAGGTGCTGACCAGGGAACTTGTCCAGGCAC----GAAGAGATCCT----TCTTAACCG
s panTro5.chr17             16326060 1597 +  83181570 AGGAAGAGCAG--------GGCCACTCTGGCTTGGCAGAGGCCTCCTGATGAAAGGTTAGTGCCAGGAAAGGCCTGCTTCAGTGAGGCTGGAGAGCAATCTGTAAAAGAGACAGCTCATCCAAGAGCAGGAGCAGTGTCAACGAATCCAAATGCAGCACAGAAAACTCCCAACTCAACA-GACACCTTTTCAAAGTTGA---AACATC-TCCCAGGCTCCTGAAGCCTGCTAATCAGATGTTTGCATGCAAATGAGTAAAAACAATAACAAGGAAAGATGCTGCATGGTGTGCCAACA--CCCC-TAGTGAAGGACTATAAAAGCCCCTCTGTATCGGATGTCTTTCCAATGCAGGTATACTGAGCTTGCAACTTCCCATCAAGGTCAGCACCAGCACCATGGCAGACGATTGTTGTCCTGGAAACACCACAGCCATTCCAGCTGTGCCCACCGTCACCACATACCCAGTTAAAGGTGGCTTTCGACATGCTCTCTGTTTGCCTAGTTCCTGCCACAGCAGAATGTGGCAACTGGTCACATGCCAAGAAAGCTGTCAGCCATCCATTGGTGCCCCAAGTGGCTGTGATCCTGCTTCGTGTCAACCTACCTGCCTTCCAGCAACGTCTTGTGTGGGATTTGTTTGCCAACCTATGTGCTCCCACGCAGCCTGCTATCAGTCTGGCACTGGTCAGTCTCCTTGTCTGGTTAGCTCATGTCAGCCATCCTGCTCGGAATCTACTTGTTGTCAGGAAAAGTGCTGCGATGCCAGTCCCTGCCAGCAAAGCTCCTGCCAGGAATCTGTCTGCATGTCTGGATCATGTCAGGCAGCTTGTGGCCAATCAGTCTGCTGTGATGCTGGATCCTGCCAGCCATCCTGCTCTGAAGTGACCTCCTGTCCGGAAACTTCTTGCCTACCAACCATCTGTACAGCTAGTCCATGCCAACCAACTTGGTGCCAAGGAAGTTCATGTCAACCCGTCAGTGGTGAAGGCCAGCCCTGTAAATCAACTTATTATCAACCCATCTGCTATATTTTCAAGCCTTGCCAATCAGCCCTCTACATGCCTGTTCCCTGCCAGCCATCGACTTGTGTGTTCAGTTCTTGCAATACTACTTGCTGTGT-GCCTTCCCATTGCCAGCCACTTCACTGCCAACTGGTTCCTTCCACATGCTTCATCTACCAGCCAGTGGCTAACTGCCAGGCCCCTTGTTCCACAAAGAACTGTTGCAAACCAGCTTCTTGTGACACTGTGATTTCTGGCCAACGAACTTGTGATGGACCCCCTTCCTATAACCAGAGTGGCTGCA---------------AAT---------------CAGCTTGCTGTGTGACTGGTTTAGGCACATCACCCAGTAGTGGCTC------------------------------------------CAATTGCT-----------------------T------------------------------------------GCCG-------------------ACTTCATGCCAACCCAGCTGTGAGTCCAGCTTCTGCAAGGCAACACTTTGTTAATGGAGCCCTCTTCACACCTCCTCTGAGGGTCTGCGGCTGTCTATAAATGCATAGCTGTCCC-TGGGTGT----CTGCCTCC-------CACCGA----------------GTACAAATGCTGCCTGCTTTCTAACTTTACCCTGATTCCACCTTCACATTCTCTCCAGGTGCTGACCAGGGAACTTGTCCAGGCAC----GAAGAGATCCT----TCTTAACCT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16230945 1597 +  83442489 AGGAAGAGCAG--------GGCCACTCTGGCTTGGCAGAGGCCTCCTGATGAAAGGTTAGTGCCAGGAAAGGCCTGCTTCAGTGAGGCTGGAGAGCAATCTGTAAAAGAGACAGCTCATCCAAGAGCAGGAGCAGTGTCAACGAATCCAAATGCAGCGCAGAAAACTCCAGACTCAACA-GACACCTTTTCAAAGTTGA---AACATC-TCCCAGGCTCCTGAAGCCTGCTAATCAGATGTTTGCATGCAAATGAGTAAAAACAATAACAAGGAAAGATGCTGCATGGCGTGCCAACA--CCCC-TAGTGAAGGACTATAAAAGCCCCTCTGTATCGGATGTCTTTCCAATGCAGGTATACTGAGCTTGCAACTTCCCAGCAAGGTCAGCACCAGCACCATGGCAGACGACTGTTGTCCTGGAAACACCACAGCCATTCCAGCTGTGCCCACCGTCACCACATACCCAGTTAAAGGTGGCTTTCGACATGCTCTCTGTTTGCCTAGTTCCTGCCACAGCAGAATGTGGCAACTGGTCACATGCCAAGAAAGCTGTCAGCCATCCATTGGTGCCCCAAGTGGCTGTGATCCTGCTTCGTGTCAACCTACCTGCCTTCCAGCAACGTCTTGTGTGGGATTTGTTTGCCAACCTATGTGCTCCCACGCAGCCTGCTATCAGTCTGGCACTGGTCAGTCTCCTTGTCTGGTTAGCTCATGTCAGCCATCCTGCTCGGAATCTACTTGTTGTCAGGAAAAGTGCTGCGATGCCAGTCCCTGCCAGCAAAGCTCCTGCCAGGAATCTGTCTGCATGTCTGGATCATGTCAGGCAGCTTGTGGCCAATCAGTCTGCTGTGATGCTGGATCCTGCCAGCCATCCTGCTCTGAAGTGACCTCCTGTCCGGAAACTTCTTGCCTACCAACCATCTGTACAGCTAGTCCATGCCAACCAACTTGGTGCCAAGGAAGTTCATGTCAACCCGTCAGTGGTGAAGGCCAGCCCTGTAAATCAACTTATTATCAACCCATCTGCTATATTTTCAAGCCTTGCCAATCAGCCCTCTACATGCCTGTTCCCTGCCAGCCATCGACTTGTGTGTTCAGTTCTTGCAATACTACTTGCTGTGT-GCCTTCCCATTGCCAGCCACTTCACTGCCAACTGGTTCCTTCCACATGCTTCATCTACCAGCCAGTGGCTAACTGCCAGGCCCCTTGTTCCACAAAGAACTGTTGCAAACCAGCTTCTTGTGACACTGTGATTTCTGGCCAACGAACTTGTGATGGACCCCCTTCCTATAACCAGAGTGGCTGCA---------------AAT---------------CAGCTTGCTGTGTGACTGGTTTAGGCACATCACCCAGTAGTGGCTC------------------------------------------CAATTGCT-----------------------T------------------------------------------GCCG-------------------ACTTCATGCCAACCCAGCTGTGAGTCCAGCTTCTGCAAGGCAACACTTTGTTAATGGAGCCCTCTTCACACCTCCTCTGAGGGTCTGCGGCTGTCTATAAATGCATAGCTGTCCC-TGGGTGT----CTGCCTCC-------CACCGA----------------GTACAAATGCTGCCTGCTTTCTAACTTTACCCTGATTCCACCTTCACATTCTCTCCAGGTGCTGACCAGGGAACTTGTCCAGGCAC----GAAGAGATCCT----TCTTAACCT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4066515 1597 +   4267968 AGGAAGAGCAG--------GGCCACTCTGGCTTGGCAGAGGCCTCCTGATGAAAGGTTAGTGCCAGGAAAGGCCTGCTTCAGTGAGGCTGGAGAGCAACCTGTAAAAGAGACAGCTCATCCAAGAGCAGGAGCAGTGTCAATGAATCCAAACGCAGCGCAGAAAACTCCCGACTCAACA-GACACCTTTTCAAAGTTGA---AACATC-TCCCAGGCTCCTGAAGCCTGCTAATCAGATGTTTGCATGCAAATGAGTAAAAACAATAACAAGGAAAGATGCTGCATGGCATGCCAACA--CCCC-TAGTGAAGGACTATAAAAGCCCCTCTGTATCGGATGTCTTTCCAATGCAGGTATACTGAGCTTGCAACTTCCCAGCAAGGTCAGCACCAGCACCATGGCAGACGGCTGTTGTCCTGGAAACACCACAGCCATTCCAGCTGTGCCCACCATCACCACATACCCAGTTAAAGGTGGCTTTCGACATGCTCTCTGTTTGCCTAGTTCCTGCCACAGCAGAATGTGGCAACTGGTCACATGCCAAGAAAGCTGTCAGCCATCCATTGGTGCCCCAAGTGGCTGTGATCCTGCTTCGTGTCAATGTACCTACCTTCCAGCAACGTCTTGTGTGGGTTTTGTTTGCCAACCTATGTGCTCCCACGCAGCCTGCTATCAGTCTGGCACTGGTCAGTCTCCTTGTCTGGTTAGCTCATGTCAGCCATCCTGCTCGGAATCTACTTGTTGTCAGGAAAAGTGCTGCGATGCCAGTTCCTGCCAGCAAAGCTCCTGCCAGGAATCTGTCTGCATGTCTGGATCATGTCAGGCAGCTTGTGGCCAATCAGTCTGCTGTGATGCTGGATCCTGCCAGCCATCCTGCTCTGAAGTGACCTCCTGTCCGGAAACTTCTTGCCTACCAACCATCTGTACAGCTAGTCCATGCCAACCAACTTGGTGCCAAGGAAGTTCATGTCAACCCGTCAGTGGTGAAGGCCAGCCCTGTAAATCAACTTATTATCAACCCATCTGCTATATTTTCAAGCCTTGCCAATCAGCCCTCTACATGCCTGTTCCCTGCCAGCCATTGACTTGTGTGTACAGTTCTTGCAATACTACTTGCTGTGT-GCCTTCCCATTGCCAGCCACTTCACTGTCAACTGGTTCCTTCCACATGCTTCATCTACCAGCCAGTGGCTAACTGCCAGGCCCCTTGTTCCATAAAGAACTGTTGCAAACCAGCTTCTTGTGACACTGTGATTTCTGGCCAACCAACTTGTGATGGACCCCCTTCCTATAACCAGAGTGGCTGCA---------------AAT---------------CAGCTTGCTGTGTGACTGGTTTAGGCACATCACCCAGTAGTGGCTC------------------------------------------CAATTGCT-----------------------T------------------------------------------GCCG-------------------ACTTCATGCCAATCCAGCTGTGAGTCCAGCTTCTGCAAGGCAACACTTTGTTAATGGAGCCCTCTTCACACCTCCTCTGAGGGTCTGCGGCTGTCTATAAATGCATAGCCATCCC-TGGGTGC----CTGCCTCC-------CACCGA----------------GTACAAATGCTGCCTGCTTTCTAACTTTACCCTGATTCCACCTTCACATTCTCTCCAGGTGCTGACCAGGGAACTTGTCCAGGCAC----GAAGAGATCCT----TCTTAACCG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2046372 1600 -   2193130 AGGAAGAGCAG--------GGCCACTCTGGCTTGGCAGAGGCCTCCTGATGAAAGGTTAGTGCCAGGAAAGGCCTGCTTCAGTGAGGCTGGGGAGCAACCTGTAAAAGAGACAGCTCATCCAAGAGCAAGAGCAGTGTCAACGAATCCAAATGCAGCGCAGAAAACTCCCGACTCAACA-GACACGTTTTCAAAGTTGGAACAACATC-TCCCAGGCTCCTGAAGCCTGCTAATCAGATGTTTGCATGCAAATGAGTAAAAACAATAACAAGGAAAGATGCTGCACGTCGTGCCAACA--CCCC-TAGTGAAGGACTACAAAAGCCCCTCTGTTTCGGATGTCTTTCCAATGCAGGTATACTGAGCTTGCGACTTCCCAGCAAGGTCAGCACCAGCACCATGGCAGACAGCTGTTGTCCTGGAAACACCACAGCCGTTCCAGCTGTGCCCACCATCACCACATACCCAATTAAAGGTGGCTTTCGACATGCTCTCTGTTTGCCTAGTTCCTGCCACAGCAGAACGTGGCAACTGGTCACATGCCAAGAAAGCTGTCAGCCATCCACTGGTGCCCCAAGTGGCTGTGATCCTGCTTCGTGTCAACCTACCTGCCTTCCAGCAACGTCTTGTGTGGGTTTTGTTTGCCAACCTATGTGCTCCCGCGCAGCCTGCTATCAGTCCGGCACTGGTCAGTCTCCTTGTCTGGTTAGCTCATGTCAGCCATCCTGCTTGGAATCTACTTGTTGTCAGGAAAAGTGCTGCGATGCCAGTCCCTGCCAGCAAAGCTCCGGCCAGCAACCTATCTGCATGTCTGGATCATGTCAGGCAGCTTGTGGCCAATCAGTCTGCTGTGATGCTGGATCCTGCCAGCCATCCTGCTCTGACGTGATCTCCTGTCCGGAAACTTCTCGCCTACCAACCGTCTGTACAGCTAGTCCATGCCAATCAACTTGGTGCCAAGGAAGTTCATGTCAACCCGTCAGTGATGAAGGCCAGCCCTGTAAATCAACTTATTATCAACCCATCTGCTATATTTTCAAGCCTTGCCAATCAGCCCTCTACATGCCTGTTCCCTGCCAGCCATTGACTTGTGTGTTCAGTTCTTGCAATACTACTTGCTGTGT-GCCTTCCCATTGCCAGCCACTTCACTGCCAACCAGCTCCTTCCACATGCTTCATCTACCAGCCAGTGGCTAACTGCCAGGCCCCTTGTTCTGCAAAGAACTGTTGCAAACCAGCTTCCTGTGACACCGTGATTTCTGGCCAACCAACTTGTGATGGACCCACTTCCCACAACCAGAGTGGCTGCA---------------AAT---------------CAGCTTGCTGTGTGACAGGTTTAGGCACATCACCCAGTGGTGGCTC------------------------------------------CAATTGCT-----------------------T------------------------------------------GCCG-------------------ACTTCATGCCAACCCAGCTGTGAGTCCAGCTTCTGTAAGGCAACACTTTGTTAATGGAGGACTCTTCACATCTCCTCTTAGGGTCTGCAGCTGTCTATAAATGCATAGCCATCCC-TGGGTGC----CTGCCTCC-------CACCAA----------------GTACAAATGCTGCCTGCTTTCCAACTTTACCCTGATCCCACCTCCACATTCTCTCCAGGTCCTGACCAGGGAACTTGTCTAGGCAC----GAAGAGATCCT----TCTTAACTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30120408 1598 -  77216781 AGGAAGAGCAG--------GGCCGCTCTGGCTTGGTAGAGGCCTCCTGATGAAAGGTTAGTGCCAGGAAAGGCCTGCTTCAGTCAGGCTGGGGAGCAACCTGTAAAAGAGACAGCTCATCCAAGAGCAGGCGCAGTGTCAACGAATCCAAATGCAGTGCAG--AACTCCCGACTCAACA-GACACATTTTCAAAGCTGGAACAACATC-TCCCAGGCTCCTGAAGCCTGTTAATCAGATGTTTGCATGCTAGTGAGTAAAAACAATAACAAGGAAAGATGCTGCATGTTGTGCCACCA--CCCC-TAGTGAAGGACTATAAAAGCCCCTCTGTATCGGATGTCTTTCAAATGCAGGTATACTGAGCTTGCGACTTCCCAGAAAGGTCAGCACCAGCACCATGGCAGACAGCTGTTGTCCTGGAAACACCACAGCCATTCCAGCTGTGCCCACCATCACCACATACCCAATTAGAAGCGACTTTCGGCATGCTCTCTGTTTGCCTAGTTCCTGCCACAGCAGAACGTGGCAACTGGTCACATGCCAAGAAAGCTGTCAGCCATCCATTGGTGCCCCAAGTGGCTGTGATCTTGCTTCGTGTCAACCTACCTGCATCCCAGCAACATCTTGTGTGGGTTTTGTTTGCCAACCTATGTGCTCCCACGCAGCCTGCTATCAGTCTGGCACTGGTCAGCCTCCTTGTCTGGTTAGCTCATGTCAGCCATCCTGCTCGGAATCTACTTGTTGTCAGGAAAAGTGCTGCAATGCCAGTCCCTGCCAGCAAAAATCCTGCCAGGAATCTGTCTGCATGTCTGGATCTTGTCAGGCAGCTTGTGGCCAATCAGTCTGCTGTGATGCTGGATCCTGCCAGCCATCCTGCTCTGAAGTGACCTCCTGTCCGGAAACTTCTTGCCTACCAACCGTCTGTACAGTTAGTCCATGCCAACCAACTGGGTGCCAAGGAAGTTCATGTCAACCCGTCAGTGGTGAAGGCCAGCCCTGTAAATCAACTTATTATCAACCCATCTGCTATATTTTCAAGCCTTGCCAATCAGCCCTCTACATGCCTGTTTCCTGCCAGCCATCGACTTGTGTGTTCAGTTCTTGCAATACTACTTGCTGCGT-GCCTTCCCTTTGCCAGCCACTTCACAGCCAACCGGCTGCTTCCACATGCTTCATCTACCAGCCAGTGGCTAACTGCCAGGTCCCTTGTTCCGCAAAGGACTGTTGCAAACCAGCTTCCTGTGACACTGTGATTTCTGGCCAACCAACCTGTGATGGACCCACTTCCTATAACCAGAGTGGCTGCA---------------AAT---------------CAGCTTGCTGTGTGACTGGTTTAGGCACATCACCCAGTGGTGCCTC------------------------------------------CAATTGCT-----------------------T------------------------------------------GCCA-------------------ACTTCATGCCAATCCAGCTGTGAGTCCAGCTTCTGCAAGGCAACACTTTGTTAATGGAGCACTCTTCACACCTCCTCTGAGGGTCTGCCGCTGTCTATAAATGCATAGCCATCCC-TGGGTGC----CTGCCTCC-------CACCGA----------------GTACAAATGCTGCCTGCTTTCTAACTTTACCGTGAGCCTACCTCCACATTCTTTCCAGGTGCTGACCAGGTAACTTGTCCAGGCAC----AAAGAGATCTT----TCTTAACCA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28033268 1598 -  80997621 AGGAAGAGCAG--------GGCCGCTCTGGCTTGGTAGAGGCCTCCTGATGAAAGGTTAGTGCCAGGAAAGGCCTGCTTCAGTAAGGCTGGGGAGCAACCTGTAAAAGAGACAGCTCATCCAAGAGCAGGCGCAGTGTCAACAAATCCAAATGCAGTGCAG--AACTCCCGACTCAACA-GACACATTTTCAAAGCTGGAACAACATC-TCCCAGGCTCCTGAAGCCTGTTAATCAGATGTTTGCATGCAAGTGAGTAAAAACAATAACAAGGAAAGATGCTGCATGTTGTGCCACCA--CCCC-TAGTGAAGGACTATAAAAGCCCCTCTGTATCGGATGTCTTTCAAATGCAGGTATACTGAGCTTGCGACTTCCCAGAAAGGTCAGCACCAGCACCATGGCAGACAGCTGTTGTCCTGGAAACACCACAGCCATTCCAGCTGTGCCCACCATCACCACATACCCAATTAGAAGCGACTTTCGGCATGCTCTCTGTTTGCCTAGTTCCTGCCACAGCAGAACGTGGCAACTGGTCACATGCCAAGAAAGCTGTCAGCCATCCATTGGTGCCCCAAGTGGCTGTGATCTTGCTTCGTGTCAACCTACCTGCATCCCAGCAACATCTTGTGTGGGTTTTGTTTGCCAACCTATGTGCTCCCACGCAGCCTGCTATCAGTCTGGCACTGGTCAGCCTCCTTGTCTGGTTAGCTCATGTCAGCCATCCTGCTCGGAATCTACTTGTTGTCAGGAAAAGTGCTGCAATGCCAGTCCCTGCCAGCAAAAATCCTGCCAGGAATCTGTCTGCATGTCTGGATCATGTCAGGCAGCTTGTGGCCAATCAGTCTGCTGTGATGCTGGATCCTGCCAGCCATCCTGCTCTGAAGTGACCTCCTGTCCGGAAACTTCTTGCCTACCAACCGTCTGTACAGTTAGTCCATGCCAACCAACTGGGTGCCAAGGAAGTTCATGTCAACCCGTCAGTGGTGAAGGCCAGCCCTGTAAATCAACTTATTATCAACCCATCTGCTATATTTTCAAGCCTTGCCAATCAGCCCTCTACATGCCTGTTTCCTGCCAGCCATCGACTTGTGTGTTCAGTTCTTGCAATACTACTTGCTGCGT-GCCTTCCCTTTGCCAGGCACTTCACAGCCAACCGGCTGCTTCCACATGCTTCATCTACCAGCCAGTGGCTAACTGCCAGGTCCCTTGTTCCGCAAAGGACTGTTGCAAACCAGCTTCCTGTGACACTGTGATTTCTGGCCAACCAACCTGTGATGGACCCACTTCCTATAACCAGAGTGGCTGCA---------------AAT---------------CAGCTTGCTGTGTGACTGGTTTAGGCACATCACCCAGTGGTGCCTC------------------------------------------CAATTGCT-----------------------T------------------------------------------GCCA-------------------ACTTCATGCCAATCCAGCTGTGAGTCCAGCTTCTGCAAGGCAACACTTTGTTAATGGAGCACTCTTCACACCTCCTCTGAGGGTCTGCCGCTGTCTATAAATGCATAGCCATCCC-TGGGTGC----CTGCCTCC-------CACCGA----------------GTACAAATGCTGCCTGCTTTCTAACTTTACCGTGAGTCTACCTCCACATTCTTTCCAGGTGCTGACCAGGTAACTTGTCCAGGCAC----AAAGAGATCTT----TCTTAACCA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2089863 1598 +  10377808 AGGAAGAGCAG--------GGCCGCTCTGGCTTGGTAGAGGCCTCCTGATGAAAGGTTAGTGCCAGGAAAGGCCTGCTTCAGTAAGGCTGGGGAGCAACCTGTAAAAGAGACAGCTCATCCAAGAGCAGGCGCAGTGTCAACGAATCCAAATGCAGTGCAG--AACTCCCGACTCAACA-GAAACATTTTCAAAGTTGGAACAACATC-TCCCAGGCTCCTGAAGCCTGTTAATCAGATGTTTGCATGCAAGTGAGTAAAAACAATAACAAGGAAAGATGCTGCATGTCATGCCACCA--CCCC-TAGTGAAGGACTATAAAAGCCCCTCTGTATCGGATGTCTTTCAAATGCAGGTATACTGAGCTTGCGACTTCCCAGAAAGGTCAGCACCAGCACCATGGCAGACAGCTGTTGTCCTGGAAACACCACAGCCATTCCAGCTGTGCCCACCATCACCACATACCCAATTAGAAGCGACTTTCGGCATGCTCTCTGTTTGCCTAGTTCCTGCCACAGCAGAACGTGGCAACTGGTCACATGCCAAGACAGCTGTCAGCCATCCATTGGTGCCCCAAGTGGCTGTGATCTTGCTTCGTGTCAACCTACCTGCATCCCAGCAACATCTTGTGTGGGTTTTGTTTGCCAACCTATGTGCTCCCACGCAGCCTGCTATCAGTCTGGCACTGGTCAGCCTCCTTGTCTGGTTAGCTCATGTCAGCCATCCCGCTCGGAATCTACTTGTTGTCAGGAAAAGTGCTGCAATGCCAGTCCCTGCCAGCAAAAATCCTGCCAGGAATCTGTCTGCATGTCTGGATCATGTCAGGCAGCTTGTGGCCAATCAGTCTGCTGTGATGCTGGATCCTGCCAGCCATCCTGCTCTGAAGTGACCTCCTGTCCGGAAACTTCTTGCCTACCAACCGTCTGTACAGTTAGTCCATGCCAACCAACTGGGTGCCAAGGAAGTTCATGTCAACCCGTCAGTGGTGAAGGCCAGCCCTGTAAATCAACTTATTATCAACCCATCTGCTATATTTTCAAGCCTTGCCAATCAGCCCTCTACATGCCTGTTTCCTGCCAGCCATCGACTTGTGTGTTCAGTTCTTGCAATACTACTTGCTGCGT-CCCTTCCCTTTGCCAGGCACTTCACAGCCAACCGGCTGCTTCCACATGCTTCATCTACCAGCCAGTGGCTAACTGCCAGGTCCCTTGTTCCGCAAAGGACTGTTGCAAACCAGCTTCCTGTGACACTGTGATTTCTGGCCAACCAACCTGTGATGGACCCACTTCCTATAACCAGAGTGGTTGCA---------------AAT---------------CAGCTTGCTGTGTGACTGGTTTAGGCACATCACCCAGTGGTGCCTC------------------------------------------CAATTGCT-----------------------T------------------------------------------GCCA-------------------ACTTCATGCCAATCCAGCTGTGAGTCCAGCTTCTGCAAGGCAACACTTTGTTAATGGAGCACTCTTCACACCTCCTCTGAGGGTCTGCCGCTGTCTATAAATGCATAGCCATCCC-TGGGTGC----CTGCCTCC-------CACCGA----------------GTACAAATGCTGCCTGCTTTCTAACTTTACCGTGAGTCTACCTCCACATTCTTTCCAGGTGCTGACCAGGTAACTTGTCCAGGCAC----AAAGAGATCTT----TCTTAACCA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1975283 1598 -   8458610 AGGAAGAGCAG--------GGCCGCTCTGGCTTGGTAGAGGCCTCCTGATGAAAGGTTAGTGCCAGGAAAGGCCTGCTTCAGTAAGGCTGGGGAGCAACCTGTAAAAGAGACAGCTCATCCAAGAGCAGGCGCAGTGTCAACGAATCCAAACGCAGTGCAG--AACTCCCGACTCAACA-GACACATTTTCAAAGTTGGAACAACATC-TCCCAGGCTCCTGGAGCCTGTTAATCAGATGTTTGCATGCAAGTGAGTAAAAATAATAACAAGGAAAGATGCTGCATGTCGTGCCACCA--CCCC-TAGTGAAGGACTATAAAAGCCCCTCTGTATCGGATGTCTTTCAAATGCAGGTATACTGAGCTTGTGACTTCCCAGAAAGGTCAGCACCAGCACCATGGCAGACAGCTGTTGTCCTGGAAACACCACAGCCATTCCAGCTGTGCCCACCATCACCACATACCCAATTAGAAGCGACTTTCGGCATGCTCTCTGTTTGCCTAGTTCCTGCCACAGCAGAACGTGGCAACTGGTCACATGCCAAGAAAGCTGTCAGCCATCCATTGGTGCCCCAAGTGGCTGTGATCTTGCTTCGTGTCAACCTACCTGCCTCCCAGCAACGTCTTGTGTGGGTTTTGTTTGCCAACCTATGTGCTCCCACGCAGCCTGCTATCAGTCTGGCACTGGTCAGCCTCCTTGTCTGGTTAGCTCATGTCAGCCATCCTGCTCGGAATCTACTTGTTGTCAGGAAAAGTGCTGCAATGCCAGTCCCTGCCAGCAAAAATCCTGCCAGGAATCTGTCTGCATGTCTGGATCATGTCAGGCAGCTTGTGGCCAATCAGTCTGCTGTGATGCTGGATCCTGCCAGCCATCCTGCTCTGAAGTGACCTCCTGTCCGGAAACTTCTTGCCTACCAACCATCTGTACAGTTAGTCCATGCCAACCAACTGGGTGCCAAGGAAGTTCATGTCAACCCGTCAGTGGTGAAGGCCAGCCCTGTAAATCAACTTATTATCAACCCATCTGCTATATTTTCAAGCCTTGCCAATCAGCCCTCTACATGCCTGTTTTCTGCCAGCCATCGACTTGTGTGTTCAGTTCTTGCAATACTACTTGCTGCGT-GCCTTCCCTTTGCCAGCCACTTCACTGCCAACTGGCTGCTTCCACATGCTTCATCTACCAGCCAGTGGCTAACTGCCAGGTCCCTTGTTCCGCAAAGGACTGTTGCAAACCAGCTTCCTGTGACACTGTGATTTCTGGCCAACCAACCTGTGATGGACCCACTTCCTATAACCAGAGTGGCTGCA---------------AAT---------------CAGCTTGCTGTGTGACTGGTTTAGGCACATCACCCAGTGATGCCTC------------------------------------------CAATTGCT-----------------------T------------------------------------------GCCA-------------------ACTTCATGCCAATCCAGCTGTGAGTCCAGCTTCTGCAAGGCAACACTTTGTTAATGGAACACTCTTCACACCTCCTCTGAGGGTCTGCCGCTGTCTATAAATGCATAGCCATCCC-TGGGTGC----CTGCCTCC-------CACCGA----------------GTACAAATGCTGCCTGCTTTCTAACTTTACCGTGAGTCTACCTCCACATTCTTTCCAGGTGCTGACCAGGTAACTTGTCCAGGCAC----AAAGAGATCTT----TCTTAACCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64919553 1598 +  75148670 AGGAAGAGCAG--------AGCCGCTCTGGCTTGGTAGAGGCCCCCTGATGAAAGGTTAGTGCCAGGAAAGGCCTACTTCAGTAAGGCTGGGGAGCAACCTGTAAAAGAGACAGCTCATCCAAGAGCAGGCGCAGTGTCAACGAATCCAAATGCAGTGCAG--AGCTCCCGACTCAACA-GACACATTTTCAAAGTTGGAACAACATG-TCCCAGGCTCCTGAAGCCTGTTAATCAGATGTTTGCATGCAAGTGAGTAAAAACAATAACAAGGAAAGATGCTGCATGTCATGCCAGCA--CCCC-TAGTGAAGGACTATAAAAGCCCCTCTGTATCGGATGTCTTTCAAATGCAGGTATACTGAGCTTGCGACTTCCCAGAAAGGTCAGCACCAGCACCATGGCAGACAGCTGTTGTCCTGGAAACACCACAGCCATTCCAGCTGTGCCCACCATCACCACATACCCAGTTAGAAGCGACTTTCGGCATGCTCTCTGTTTGCCTAGTTCCTGCCACAGCAGAACGTGGCAACTGGTCACATGCCAAGAAAGCTGTCAGCCATCCATTGGTGCCCCAAGTGGCTGTGATCTTGCTTCGTGTCAACCTACCTGCCTCCCAGCAACGTCTTGTGTGGGTTTTGTTTGCCAACCTGTGTGCTCCCACGCAGCCTGCTATCAGTCTGGCACTGGTCAGCCTCCTTGTCTGGTTAGCTCATGTCAGCCATCCCGCTCGGAATCTACCTGTTGTCAGGAAAAGTGCTGCAATGCCAGTCCCTGCCAGCAAAACTCCTGCCAGGAATCTGTCTGCATGTCTGGATCATGTCAGGCAGCTTGTGGCCAATCAGTCTGCTGTGATGCTGGATCCTGCCAGCCATCCTGCTCTGAAGTGACCACCTGTCCGGAAACTTCTTGCCTACCAACCGTCTGTACAGTTAGTCCATGCCAACCAACTTGGTGCCAAGGAAGTTCATGTCAACCCGTCAGTGGTGAAGGCCAGCCCTGTAAATCAACTTATTATCAACCCATCTGCTATATTTTCAAGCCTTGCCAATCAGCCCTCTACATGCCTGTTTCCTGCCAGCCATCGACTTGTGTGTTCAGTTCTTGCAATACTACTTGCTGCGT-GCCTTCCCTTTGCCAGCCACTTCACTGCCAACCGGCTGCTTCCACATGCTTCATCTACCAGCCAGTGGCTAACTGCCAGGTCCCTTGTTCCGCAAAGGACTGTTGCAAACCAGCTTCCTGTGACACTGTGATTTCTGGCCAACCAACTTGTGATGGACCCACTTCTTATAACCAGAGTGGCTGCA---------------AAT---------------CAGCTTGCTGTGTGACTGGTTTAGGCACATCACCCAGTGGTGCCTC------------------------------------------CAATTGCT-----------------------T------------------------------------------GCCA-------------------ACTTCATGCCAATCCAGCTGTGAGTCCAGCTTCTGCAAGGCAACACTTTGTTAATGGAGCACTCTTCACACCTCCTCTGAGGGTCTGCCGCTGTCTACAAATGCATAGCCATCCC-TGGGTGC----CTGCCTCC-------CACCGA----------------GTACAAATGCTGCCTGCTTTCTAACTTTACCGTGAGTCTACCTCCACATTCTTTCCACGTGCAGACCAGGTAACTTGTCCAGGCAC----AAAGAGATCTT----TCTTAACCA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2159583 1598 +   4244037 AGGAAGAGCAG--------GGCCGCTCTGGCTTGGTAGAGGCCTCCTGATGAAAGGTTAGTGCCAGGAAAGGCCTGCTTCAGTAAGGCTGGGGAGCAACCTGTAAAAGGGACAGCTCATCCAAGAGCAGGCGCAGTGTCAACGAATCCAAATGCAGTGCAG--AACTCCCGACTCAACA-GACACATTTTCAAAGTTGGAACAACATC-TCCCAGGCTCCTGAAGCCTGTTAATCAGATGTTTGCATGCAAGTGAGTAAAAATAATAACAAGGAAAGATGCTGCATGTCGTGCCACCA--CCCC-TAGTGAAGGACTATAAAAGCCCCTCTGTATCGGATGTCTTTCAAATGCAGGTATACTGAGCTTGCGACTTCCCAGAAAGGTCAGCACCAGCACCATGGCAGACAGCTGTTGTCCTGGAAACACCACAGCCATTCCAGCTGTGCCCACCATCACCACATACCCAATTAGAAGCGACTTTAGGCATGCTCTCTGTTTGCCTAGTTCCTGCTACAGCAGAACGTGGCAACTGGTCACATGCCAAGAAAGCTGTCAGCCATCCATTGGTGCCCCAAGTGGCTGTGATCCTGCTTCGTGTCAACCTACCTGCCTCCCAGCAACGTCTTGTGTGGGTTTTGTTTGCCGACCTATGTGCTCCCACGCAGCCTGCTATCAGTCTGGCACTGGTCAGCCTCCTTGTCTGGTTAGCTCATGTCAACCATCCTGCTCGGAATCTACTTGTTGTCAGGAAAAGTGCTGCAATGCCAGTCCCTGCCAGCAAAGCTCCTGCCAGGAACCTGTCTGCATGTCTGGATCATGTCAGGCAGCTTGTGGCCAATCAGTCTGCTGTGATGCTGGATCCTGCCAGCCATCCTGCTCTGAAGTGACCTCCTGTCCGGAAACTTCTTGCCTACCAACCGTCTGTACAGTTAGTCCATGCCAACCAACTTGGTGCCAAGGAAGTTCATGTCAACCCGTCAGTGGTGAAGGCCAGCCCTGTAAATCAACTTATTATCAACCCATCTGCTATATGTTCAAGCCTTGCCAATTAGCCCTCTACATGCCTGTTTCCTGCCAGCCATCGACTTGTGTGTTCAGTTCTTGCAATACTAGTTGCTGTGT-GCCTTCCCTTTGCCAGCCATTTCACTGCCAACCGGCTGCTTCCACATGCTTCATCTACCAGCCAGTGGCTAACTGCCAGGTCCCTTGTTCCGCAAAGGACTGTTGCAAACCAGCTTCCTGTGACACTGTGATTTCTGGCCAACCAACTTGTGATGGACCCACTTCCTATAACCAGAGTGGCTGCA---------------AAT---------------CAGCTTGCTGTGTGACTGGTTTAGGCACATCACCCAGTGGTGCCTC------------------------------------------CAATTGCT-----------------------T------------------------------------------GCCA-------------------ACTTCATGCCAATCCAGCTGCGAGTCCAGCTTCTGCAAGGCAACACTTTGTTAATGGAGCACTCTTCACACCTCCTCTGAGGGTCTGCCACTGTCTATAAATGCATAGCCATCCC-TGGGTGC----CTGCCTCC-------CACCGA----------------GTACAAATGCTGCCTGCTTTCTAACTTTACCGTGAGTATACCTCCACATTCTTTCCAGGTGCTGACCAGGTAACTTGTCCAGGCAC----AAAGAGATCTT----TCTTAACCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2182590 1597 +   4569836 AGGAAGAGCAG--------GGCCCCTCTGGCTTGGTAGAGGCCTCCTGATGAAAGGTTAGTGCCAGGAAAGG-CTGCTTCAGTAAGGCTGGGGAGCAACCTGTAAAAGAGACAGCTCATCCAAGAGCAGGCGCAGTGTCAACGAATCCAAATGCAGTGCAG--AACTCCCGACACAACA-GACGCATTTTTAGAGTTGGAACAACATC-TCCCAGGCTCCTGAAGCCTGTTAATCAGATGTTTGCATGCAAGTGAGTAAAAACAATAACAAGGAAAGATGCTGCATGTCGTGCCAGCA--CCCC-TAGTGAAGGACTATAAAAGCCCCTCTGTATCGGATGTCTTTCAAATGCAGGTATACTGAGCTTGCGACTTCCCAGAAAGGTCAGCACCAGCACCATGGCAGACCGCTGTTGTCCTGGAAACACCACAGCCATTCCAGCTGTGCCCACCATCACCACATACCCAATTAGAAGCGACTTTCGTCATGCTCTCTGTTTGCCTAGTTCCTGCCACAGCAGAACGTGGCAACTGGTCACTTGCCAAGAAAGCTGTCAGCCATCCATTGGTGCCTCAAGTGGCTGTGATCCTGCTTCGTGTCAACCTACCTGCCTCCCAGCAACGTCTTGTGTGGGTTTTGTTTGCCAACCTATGTGCTCCCACGCAGCCTGCTATCAGTCTGGCACTGGTCAGCCTCCTTGTCTGGTTAGCTCATGTCAACCATCCTGCTCAGAATCTACTTGTTGTCAGGAAAAGTGCTGCAATGCCAGTCCCTGCCAGCAAAACTCCTGCCAGGAACCTATCTGCATGTCTGGATCATGTCAGGCAGCTTGTGGCCAATCAGTCTGCTGTGATGCTGGATCCTGCCAGCCATCCTGCTCTGACGTGACCTCCTGTCCGGAAACTTCTTGCCTACCAACTGTCTGTACAGTTAGTCCATGCCAAACAACTTGGTGCCAAGGAAGTTCATGTCAACCCGTCAGTGGTGAAGGCCAGCTCTGTAAATCAACTTATTATCAACCCATCTGCTATATTTTCAAGCCTTGCCAATCAGCCCTCTACATGCCTGTTTCCTGCCAGCCATCGACTTGTGTGTTCAGTTCTTGCAATACTACTTGCTGCGT-GCCTTCCCTTTGCCAGCCACTTCACTGCCAACCGGCTGCTTCCACATGCTTTATCTACCAGCCAGTGGCTAACTGCCAGGTCCCTTGTTCCGCAAAGGACTGTTGCAAACCAGCTTCCTGTGACACTGTGACTTCTGGCCAACCAACTTGTCATGGACCCACTTCCTATAACCAGAGTGGCTGCA---------------AAT---------------CAGCTTGCTGTGTGACTGGTTTAGGCACATCACCCAGTGGTGCCTC------------------------------------------CAGTTGCT-----------------------T------------------------------------------GCCA-------------------ACTTCATGCCAACCCAGCTGTGAGTccagcttctgcaaggcagcactttgttaatagagcactcttcacacctcctctcagggtctgcCGCTGTCTGTAAATGCATAGCCATCCC-TGGGTGC----CTGCCTCC-------CACCGA----------------GTACAAATGCTGCCTGCTTTCTAACTTTACCGTGAGTCTACCTCCACATTCTCTCCAGGTGCTGACCAGGGAAATTGTCCAGGCAC----AAAGAGATCTT----TCTTAACCA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46138409 1599 - 159171411 AGGAAGAGCAG--------GGCCACTCTGGCTTGGCAGAGGCCTCCTGATGAAAGGGTAGTGCCAGGAAGGGCCTGCTTCAGTGAGGCCGAGGAGCAACCTGTAAAAGAGACAGCTCATCCCAGAGCAGGAGCGGTCTCAGGGAAGCCAAATGCAGCACAGAAAACTCCCGACTCAACA-GACACCTTTTAAAAGTTGGAGCAGCATC-TCCCAGGCTCCTGAAGCCTGCTAATCAGATGTTTGCATGCAAATGAGTAAAAACAATAACAAGGAAA-ATGCTGTATGTCATACCAACA--CCCC-TAGTGAAGGACTATAAAAGCCCTTATGTATTGGATGTCTTTCAAATGCAGGTATACTGAGCTTGCCTCTTCCCAGCAAGGTTCACACCAGCACCATGGGAGACAGCAGTGGTCCTGGAAACACCACGGCCCTTCCAGCTGTGCCCACCATCTCCACATGCCCAGTTAGAGGCGGCTTTCGACATGCTATCTGTTTGCCTAGTTCCTGCCACAGCAGGACGTGGCAACTGGTCACATGCCAAGAAAGCTGTCAGCCATCCAACGGTGCCCCACGTGGCTGTGATCCTGCTTTGTGTCAACCTACCAGCCTTCCAGGAATGTCATGTGTGGGTTTTGTTTGCCAACCTGTGTGCTTCTGCGCAGCCTGCCCTCAGTCTGGCACTGGTCAGTCTCCTTGTCTGGTTAGCTCATGTCAACCACCCTGCTCGGAATCTACATGTTGTCAGGAAGAGTGCTGCGATGCCAGTCCCTGCCCGCAAAGCTCCTGCCGGGAATCTGGCTGCGTGTCTGGGTTATGTCAGGCAGCTTGTGGCCAATCAGTCGGCTGTGATGCTGGATCCTGCCAACCATCCTGCTCTGAAGTGACCTTCTGTCCTGAAACTTCTTGCCTACCAACCATCTGTACAGCTAGCCCATGCCAACCAACCTGCTGCCAAGGAAGTTCATGTCAACCAGTCAGCGGTGAAGGCCAGCCCTGTAAATCAACTTATTATCAACCCATCTGCTGTATTTTCAAGCCTTGCCAACCAGTCCTCTGTGTGCCTGTTCCCTGCCAGCCATCGACTTGTGTGTTTGGTTCTTGCAATACTACTTGCTGCGT-GCCTTCCCTTTGCCAGCCACTTCACTGCCAACCAGCTCCTTCCATATGCTTCATCTACGAGCCAGTAGCTAACTGCCAGGCCCCTTGTTCTGCAAAGAACTGTTGCAAACCAGCTTCCTGTGACATTGTGATTTCTGGCCAACCAACTTGTGATGGACCCACTTCCTACAACCAGAGTGGCTGCA---------------AAT---------------CAGCTTGCTGCGTGACAGGTTTAGGTGCATCACCCAGTGGTGGCTC------------------------------------------CAATTGCT-----------------------T------------------------------------------GCCG-------------------ACTTCATGCCAACCCAGCTGTGAGTCCAGCTTCTGCAAGGGAACACTTCATTAATGGAGCACTCCTCACACCCCCTCTGAGGGTCTGCAGCTGTCTATAAATGCATAGCCATCCC-TGGGTGC----CTGCATCC-------CACTGA----------------GTACAAATGCTGCCTGTTTTCTAACTTTACCCTGAGTCCGCCTCCACATTCTCCCCAGGTGCTGACCAGGGAACTTGTTCAGGCAA----GAATAGATCCT----TCTTAACTA
i calJac3.chr5              C 0 I 307
s saiBol1.JH378271           1848083 1598 +   3513951 AGGAAGAGCAG--------GGCCACTCTGGCTTGGCAGAGGCCTCCTGATGAAAGGGTAGTGCTAGGAAGGGCCTGCTTCAGTGAGGCTGGGGAGCAACCTGTAAAAGAGACAGCTCAT-CCGGAACGGGAGCAGTCTCAGCGAAGCCAAATGCAGCGCAGAAAACTCCCAACTTGACA-GGCACCTTTTAAAAGTTGGAACAACATC-TCCCAGGCTCCTGAAGCCTGCTAATCAGATGTTTGCCTGCAAACGAGTAAAAACAATAACAAGGAAA-ATGCTGCATGTCACTCCAACA--CCCC-TAGTGAAGGACTATAAAAGCCCCTATGTATCGGATGTCTTTCAAATGCAGGTATACTGAGCTTGCAACTTCCCAGCAAGGTCCACACCAGCACCATGGGAGACAGCAGTGGTCCTGGAAACACCACGGCCCTTCCAGCTGTGCCCACCATCTCCACATGCCCAATTAGAGGCGGTTTTCAACATGCTATCTGTTTGCCTAGTTCCTGCCACAGCAGGACGTGGCAATTGGCCACATGCCAGGAAAGCTGTCAGCCATCCAACAGTGCCCCATGTGGCTGTGATCCTGCTTCGTGTCAACCCACCTGCCTTCCAGGAACGTCGTGTGTGGGTTTTGTTTGCCAACCCGTGTGCTTCTGTGCAGCCTGCCATCAGTCCGGCACTGGTCAGCCTCCTCGTCTGGTTAGCTCATGTCAACCACCCTGCTCGGAACCTATGAGTTGTCAGGAAGAGTGCTGCGATGCCAGTCCCTGCCCACAAAGCTCCTGCCGGGAACCTGGCTGCATGTCTGGGTCATGTCAGGCAGCTTGTGGCCAATCAGTCGGCTGTGATGCCGGATCCTGCCAACCATCCTGCTCTGAAGTGACCTCCTGTGCTGAAACTTCTTGCCTACCAACCATCTGTACAGCTAGCCCATGCCAACCAACCTGCTGCCAAGGAAGTTCCTGTCAACCTGTCAGTGGTGAAGTCCAGCCCTGTAAATCAACTTATTATCAACCCATCTGCTGTATTTTCAAGCCTTGCCAACCAGTCCTCTGCATACCCGTTCCCTGCCAGCCATCAACTTGTGTGTTTGGTTCTTGCAATACTACTTGCTGCGT-GCCTTCCCTTTGCCAGCCACTTCACTGCCAACCGGCTCCTTCCATACGCTTCATCTACCAGCCAGTGGCTAACTGCCAGGCCCCTTGTTCTGCAAAGAACTCTTGCAAACCAGCTTCCTGTGACACTGTGATTTCTGGCCAACCAACTTGTGATGGACCCACTTCCTACAACCAGAGTGGCTGCA---------------AAT---------------CAGCTTGCTGTGTGACAGGTTTGGGTGCATCACCCAGTGGTGGCTC------------------------------------------CAATTGCT-----------------------T------------------------------------------GCCG-------------------ACTTCATGCCAACCCAGCTGTGAGTCCAGCTTCTGCAAGGGAACACTTTGTTAACGGAGCACGTCTCACACCTCCTCTGAGGGTCTGCAGCTGTCTATAAATGCATAGCCATCCC-TGGGTGC----CTGCATCC-------CACTGA----------------GTACAAATGCTGCCTGTTTTCTAACTTTACCCTGAGTCCGCCTCCACATTCTCCCCAGGTGCTGACCAGGGAACTTGTTCAGGCAC----GAAGAGATACT----TTTTAACCA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1899203 1598 +   1920343 AGGAAGAGCAG--------GGCCACTCTGGCTTGGCAGAGGCCTCCTGATGAAAGGGTAGTGACAGGAAGGGCCTGCTTCAGTGAGGCTGGGGAGCAACCTGTAAAAGAGACAGCTCATCCCAGAGCGGGAGCAGTCTCAGCGAAGCCAAATGCAGCGCAGAAAACTCCCGACTCGATA-GACACCTTTTAAAAGTTGGAACAACATC-TCCCAGGCTCCTGAAGCCTGCTAATCAGATGTTTGCATGCAAATGAGTAAAAACAATAACAAGGAAA-ATGCTGTATGTCATACCAACA--CCCC-TAGTGAAGGACTATAAAAGCCCCTATGTATCGGATGTCTTTCAAATGCAGGTATACTGAGCTTGCAACTTCCCAGCAAGGTCCACTCCAGCACCATGGGAGATAGCAGCGGTCCTGGAAACACCACGGCCCTTCCAGCTGTGCCCACCATCTCCACATGCCCAATTAGAGGCAGCTTTCGACATGCTATCTGTTTGCCTAGTTCCTGCCACAGCAGGACGTGGCAACTGGCCACATGCCAAGAAAGCTGTCAGCCATCCAACGGTGCCCCATGTGGCTGTGATCCTGCTTCGTGTCAACCTACCTGCCTTCCAGGAACGTCGTGTGTGGGTTTTGTTTGCCAACCTGTGTGCTTCTGCGCAGCCTGCCATCAGTCCGGCACTGGTCAGTCTCCTTGTCTGGTTAGCTCATGTCAACCACCCTGCTCGGAATCTACGTGTTGTCAGGAAGAGTGCTGTGATGCCAGTCCCTGCCCGCAAAACTCCTGCCGGGAAGCTGGCTGCACGTCTGGGTCATGTCAGGCAGCTTGTGGCCAATCAGTCGGCTGTGATGCTGGACCCTGCCAACCATCCCGCTCTGAAGTGACCTCCTGTGCTGAAACTTCTTGCCTACCAACCATCTGTGCAGCTAGCCCATGCCAACCAACCTGCTGCCAAGGAAGTTCCTGTCAACCTGTCAGTGGTGAAGGCCAGCCCTGTAAATCAACTTATTATCAACCCATCTGCTATATTTTCAAGCCTTGCCAACCAGTCCTCTGCATGCCTGTTCCCTGCCAGCCATCAACTTGTGTGTTTGGTTCTTGCAATACGACTTGCTGCGT-GCCTTCCCTTTGCCAGCCACTTCACTGCCAATCGGCTCCTTCCATATGCTTCATGTACCAGTCAGTGGCTAACTGTCAGGCCCCTTGTTCTGCAAGGAACTGTGGCAAACCAGCTTCCTGTGACACTGTGATTTCTGGCCAACCAACTTGTGATGGACCCACTTCCTACAATCAGAGTGGCTGCA---------------AAT---------------CAGCTTGCTGTGTGACAGGTTTAGGTGCATCACCCAGTGGTGGCTC------------------------------------------CAATTGCT-----------------------T------------------------------------------GCTG-------------------ACTTCATGCCAACCCAGCTGTGAGTCCAGCTTCTGCAAGGGAACACTTTGTTAATGGAGTACTTCTCACACCTCCTCTGAGGGTCTGCAGCTGTTTATAAATGCATAGCCATCCC-TGGGTGC----CTGCATCC-------CACTGA----------------GTACAAATGCTACGTGTTTTCTAACTTTACCCTGAGTCCACCTCCACATTCTCCCCA-GTGCTGACCAGGGAACTTGTTCAGGCAC----GAAGAGATCCT----TCTTAACCA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7013115 1600 -   7032639 AGGAAGAGCAG--------GGCCACTCTGGCTTGGCAGAGGCCTCCTGATGAAAGGGTAGTGCCAGGAAGGGCCTGCTTCAGTGAGGCTGGGGAGCAACCTGTAAAAGAGACAGCTCATCCCAGAGCGGGAGCCGTCTCAGCGAAGCCAAATGCAGCACGGAAAACTCCCGGCTCAACA-GACACCTTTTAAAAGTTGGAACAACATC-TCCCAGGCTCCTGAAGCCTGCTAATCAGATGTTTGCATGCAAATGAGTAAAAACAATAACAAGGAAA-ATGCTGTATGTCATACCAACA--CCCCATAGCGATGGACTATAAAAGCCCCTATGTATCGGATGTCTTTCAAATGCAGGTATACTGAGCTTGCGACTTTCCAGCAAGGTCCACGCCAGCACCATGGGAGACAGCAGTGGTCCTGGAAACACCACGGCCCTTCCAGCTGTGCCCACCATCTCCACATGCCCAGTTAGAGGCGGCTTTCGACATGCTATCTGTTTGCCTAGTTCCTGCCACAGCAGGACATGGCAACTGGCCACATGCCAAGAAAGCTGTCAGCCATCCAATGGTGCTCCACGTGGCTGTGATCCTGCTTCGTGTCAACCTACCTGCCTTCCAGGAACGTCGTGTGTGGGTTTTATTTGCCAACCTGTGTGCTTCTGTGCAGCCCGCCATCAGTCCGGCCCTGGTCAGTCTCCTTGTCTGGGTAGCTCACGTCAACCACCCTGCTCGGAATCTACATGTTGTCAGAAAGAGTACTGCGATGCCAGTCCCTGCCCACAAAGCTCCTGCCGGGAACCTGGCTGCATGTCTGGGTCATGTCAGGCAGCTTGTGGCCAATCAGTCGGCTGTGATGCTGGATCCTGCCAACCATCCTGCTCTGAAGTGACCTCCTGTCCTGAAACTTCTTGTCTACCAACCATCTGTACAGCTAGCCCATGCCAACCAACCTGCTGCCAAGGAAGTTCATGTCAACCCGTCAGTGGTGAAGGCCAGCCCTGTAAATCAACTTATTATCAACCCATCTGCTGTATTTTCAAGGCTTGCCAACCAGTCCTCTGCATGCCTGTTCCCTGCCAGCCATCGACTCGTGTGTTTGGTTCTTGCAATACTACTTGCTGCGT-GCCTTCCCTTTGCCAGCCACTTCACTGCCAACCGGCTCCTTCCATATGCTTCATCTACCAGCCGGTGGCTAACTGCCAGGCTCCTTGTTTTGCAAAGAACTGTTGCAAACCAGCTTCCTGTGACACTGTGATTTCTGGCCAACCAACTTGTGATGGACCCACTTCCTACAACCAGAGTGGCTGCA---------------AAT---------------CAGCTTGCTGTGTGACAGGTTTAGGTGCATCACCCAGTGGTGGCTC------------------------------------------CAATTACT-----------------------T------------------------------------------GCCG-------------------ACTTCATGCCAACCCAGCTGTGAGTCCAGCTTCTGCAAGGGAACACTTTGTTAACGAAGCACTCCTCACACCTCCTCTGAGGGTCTGCAGCTGTCTATAAATGCATAGCCATCCC-TGGGTGC----CTGCGTCC-------CACTAA----------------GTACAAATGCTGCCTGTTTTCTAACTTTACCCTGAGTCCACCTCCACATTCTCCCCAGGTGCTGACCAGGGAACTTGTTCAGGCAC----GAAGAGATCCT----TCTTAACCA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22840608 1578 +  28711273 AGTGAGAACAG--------GGCT-CTCTGGCGTGATGTGGGCCTCCTGATGAGAGGTTAGTGCCGGGAAAAGCCTGCTTTAGCGAGGCTGGGGTATACCCTATAAAAGAGACAGCTCATCCCAGA-----------------GAATCCAAAGTCAGCAATGAAAACTCTCAACTAAAAA-GATACATACTTGAGGTTGG----------------GCTCCTGAAGCCTGATAATCAGATGTTTGCATACAAATGAGTAAAAACAATAACAAAGAAAGATGCTATAGGTTGTGCCAACT--CCCC-TGGTGAAGAACTATAAAAGCCCCTGTGTACTGGATACCTTTCAAACTCAAGTGTACGGAGTGTGCGACCTTCCAGCTGGGTCAGCACCAGCACCATGGTGGACAGCTGTTGTGCTGGAGACACCACTGCCATTCCTGCTGCACCCACTGTCTCCACATGCCCAGGTGGTGGCCGCATCCGATATGCAATCTGTTTGCCCAGTTCCTGCCAGAGCAGGACATGGCAGCTGGCCACAGTCCAGGAAAACTGTCAGGTGTCCAGTGGTGCCTCAAGTGGCTGTGAACCTGCTTCATGCCAAACCACCTGCCTTCCATCTGCCTCTTGTGTGGGTTTTACTTGCCAACCCATGTGCTCCCGCATAGCTTCCTGTCAATCTGGAGCTGGTCAG---------------------------CCACCCTGCTTAGATGCCACCAGGTGTCAGGTGAAGTGCTGTGATACCAGTCCCTGCCAGCAAAGCTCCTGCCAGGAACCTGTCTGCACCTCTGGATCATGTCGGGCAGCTTGTGACCCATCTGTCTGCTGCGATGCTCTATCCTGTCAGCCATCCTGCTCTGAAGTGACCTCCTGCCCTGAAACATCCTGCCCACCAATCATCTGTACAGCTAGTCCAAGCCAACCTACTAGCTACCAAGGAGGTTCATGTCAACCCATCTGGGGCAAAGGCCAGATCTGTAAACCAGCATATTACCAACCCATCTGCTACGTCCTCGAGACTTGCCAGTCACTTCCCTGCGTGCCTGCTCCCTGCCAGCCTTTGACTTATGTGTTCAGTTCTTGTGATCCTACCTGCTGTGT-GCCCTCCTTTTGCCAACCA---------------GCTCCTTCCATATCTTTCGTCTGCCAGCCAGTGGCTACCTGCCAGTCCTCTTGTTCTGCATTGAATTCTTGCAAGTCAACTTCCTGTGGTGCTGTGCTTTCTGGCCAACCAATTTGTGACGACCCCCCTTCCCGTAACCAAAGAGGCTACAAATCTTCTTCCCGTCAAT---------------CAGCATGCTGCGTGACAGGTGTAGGCATACCATCCAGTGGTGGCTCTCCTTGCTTCCAACCAACTTCCCCAAATCTCTGCAAGGCAAACACTCGCT-----------------------T------------------------------------------GGTG-------------------ACTTCCTGCCGACGCAGCTATCAGTCCAGCTTCCGGAAGGGAGCGCTTTGTTGACGGAGCACTCTTCACACCTGCTCTGATGGTTTGCCACTGTCTGCACCTGCACAGCCACCCCATGGGTGCCTGTCTGCCTCT-------GACCGA----------------GCACAAACAATGCTTGCTTTCTAACTTTACCCCGAGCCTAGCCCCACATCGTCTCCAAGTCAGGACTAGGGAACTTGCCCAGTCAC----TAAGAAATCCA-------------
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22103154 1614 - 122082543 AGGAAGAGCGG-------------CTTCCTCTTGGAGGAGGCCTCCTGATGAGAGGGTACTG--AGGAAAAGCTTGCTTTGGTGAGGCTGAGGAACAACCTGTAAAAGAGACAGCTCATCCCAGAGT---------------GCATCCAAATTCGGCAAAGAAAACTCCCAG------------------------TGG--CGGCCTCGTCCAGGGCTCCTAAAGCC--CTCACCTGATGTTTATATGTAAATGAATAAGAATACCAACAAGGAAAGATGCTGTAGGCAGGGCCAACAACACCC-CAGGGAAGGACTATAAAATCCCCTTGGAATCAGATGCCTTT----TTCAAACGGATGGTTCTTGCAGACTCCCAGCCTGGCTAGTAGGAACACCATGGCAGACAGCTGTTGCCCTGAAAACCCCACAGCTGTTCCAACTGTGCCCACCATCTCTACATGCTCCAATGGTGGCAGCATTAGAAATGCTATCCGTTTACCCAGTTCCTGCCGGTGTAGGACATGGCAACTGGTTACACATCAAGAAAACCGTCAAGGACCCGACAGTGTCCCAGTTAGCTCTGAACCTGTTTCTTGTCCATCCACCTGCTTCCCAGAAACTCCCTGTGTGGGTTTTATTTGCCAACCCATAGGTTCACACATGGCCTGCTGTGCATCTGACACTGGTGGGAGTCCTCATCCTGCTGCTTCATGCCAGCCCTCCTGTCTGGAATCTGCTGGTTGTCACACGATGTGCTACGAGAACAGCTCCTGCCACCAGAGCTCCGGCCAGGGATCTGCCTGCACATCTGGGTCATGCCAGACAGCATGTGGCCCATCAGCGTCCTGTGATGACAGATCCTGCCAGCCATCCTGCTCTGAAGCAACATCCTATGCTGAGACCCCGTGTCTACCAGCTGGCTGTGAGGCTGGCTCGTGCCAACCAACCAGCTGCCAAGGCGGGTCACATCAACCCACCAGAGGTGAAGGTCAGCTCTGTCAGTCAGTTTATTACCAACCTATCTGCTATGTTCTTAAGTCCTGCCAGTCAACTCCCTGCATGTCTGTCTCCTGCCAGCCATTAACTTGTATGT---GCTTTTGCAGTCAAACTTGCTGTGT-GCCCCCCACTTGCCAGCCACTTCACTGTCAAACAACGCCTATAATCTCCTTCATCTGCCAGCCTGTGGCTCCCTGCCAGTCCCCCTGTTTTTTAAAGAGCAGCAGTAAATCAGCTTCGTGTG---TTATGATTTCTGGCCAACAGATTTGTGGTGGACCCACTCCC---GATCAGAGTGGCTGCC---------------AATCTCCTTCCTGCCATCCCCCTTGCTGTGTGACTGGTTTAGGTCAACCTTCCAGCAGTGGGCC------------------------------------------TGGTTGCTGTCCACCAACCTCTCCAGACATAT------------------------------------------GCCAAGCGGGCACCTATGGACCCACTTCTTGACAACCTAGCTGTGAGTGCAGCCTCCCCAAGGCCAAACTTCA-TGATGGAACTCTGCTCATAACTCTTCTGAGGGTGTGCTATAGTCCTCAAGTATGGAGCCACCGA-TGGGTGC----CTGCCTCCAGCTCTGCACAGACATTGCCTCCAGACCTGTACAGGCATCGCCTCCTCTCTGGTTTT-CCTGGAGTTCAGACTCACATTCTCTCCAAGTGCTGAGGAGAGGACTTGT-CAGCTCT----GAGGAGATCTT----ACCCA----
i mm10.chr11                C 0 C 0
s canFam3.chr9              21453833 1662 +  61074082 AGAAAGAGCAGACTGCTCAGACTGCTTTGGCTGAGCTGAGGCCTCCTGATGAGAGGTTAGTTTAGGGAAAAGCCTGCATCAAGGCGGCTGGAGAACAACCTGTAAAAGAGACAGCTCATCCCAGAGCAGGAATAGCATCGATGAATCTAAACCCAGGAAAGATAACTCTCAACTCAACA-GACAAGTTTTTAAACTGGGGATAATATC-TTCCAGGCTCCTGAAGCCTGCTAATCAGATGTTTGTATGCAAATGGGTGGAAACAATAACACGGAAAGATGCTCTAAGCTGTACCAACA--CCCC-TAGTGAAGGACTATAAAAGCCCCCATGTATTAGATGTCTTTCACACTCGGGTATACTGAGTTTGCAACTTCCTAGCAAGGTTAACGCCAGCACCATGGTGGACAGCTGTTGCCCCAGAACCACCATGACCGTTCCAGCTGTGCCCACTTTC---ATATGCTCAAATGGCGGTAGCTTCCGAAATGGTATCTGTTTGCCTAGTTCCTGCCGGAGCAGAACGTGGCAACTGGTCACATGCCAAGAAAGCTGTCAGCCATCCAGCAGTGCCCCAAGTGGCTGTGAACCTGCTTCTTGCCAACCTACCTGCCTTCCAACAACTTCTTCTGTTGGTTTTGTCTGCCAACCCATTTGCTCCTGTACGGCCTGCTATGAATCTGGCACTGGTCAGTCTCCATGTCTGGTTAGCTCATGCCAACCCTCCTGCTCAGAATCTACCAGTTGTCAGGTAAATTGCTGTGAAGCCAGCCTCAACCAGCAAACCTCCTGCCAAGAACCTGTCTTTGTGTCTGGATCATGCCAGGCAGCTTGTGGCCAATCGGTCTGCTGTGACACTAGGTCCTGCCAGCCATCCTGCTCTGAAGTAACTTCCTGTGCTGAAAATTCTTGCCCACCAACCATCTGTGCAGCTAGTCCATGCCAGTCAACTTGCTGCCAACAAGGTTCATGTCAACCCACTAATGGCAAAGATCAGCTCTGCAAATCAACTTATTACCAACCCATCTGTTACATTTTTAAGACTTGCCAATTGGTTCCCTTTATGCCTGTTCCCTGCCAGCCGTCAACTTGTGTGTTCAGTTCTTGCAATCCTACATGCTGTGT-GTCCTCCCTTTGCCAGCCACTTTACTGCCAACCATCTCCTTCGATATCCTTCGTCTGCCAGCCAGTGGCTAACTGCCAGCCCCCATGTTTTGTAAAGAACGCTTGCAAACTAGTTTCCTGTGGCACCATGCTTTCTGGCCAACCAACTTGTGATGGATCCACTTCCTGCAACCGAGATGTCTGCA---------------AATCCCCTTCCTGTCAACCAGCTTGCTGTGTGACAGGTTTAGGCAAACCATCCAGCGGTGGCTG------------------------------------------CAATTGCT-----------------------TTTGACCAACTGCCCCAAGTCTCTGCAAAGCCAGCATCTGCTCGCTA-------------------ACTTCCTGACAACTCAGGCATAAGTCCAGCTGCTGTAAGGCAACGCTTCACTGATGCAGCACTCTCCACATTTCT----GAGGTCTGCCACTATCTGCAAATGCATTGCTACCCT-GTGGTGT----CCTTTTCC-------GACTGA----------------GTGCAAATGCTATCTGCATGCTAACTTCATTCTCAGTCCAGCCCCACATTCTATCCAGGGGCTGACGAGGGAATTTGCCCAGGCACTAAGAAAGAGATCTT----TCTTTATCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            456904 1643 -    852752 AGGAAGAGTGG--------GGCTGCTTTGGCTTTGCTGAGGCCTCCTGATGAGGGGTTAGAGC--AGAAAGGCCTGCTTCAGGGCGGCTGGGGAACAACCTGTAAAAGACACAGCTCATCCCAGAGCAGGAGTGGCATGAATGAATCCAAATTCAGCAAAGAAAACTCCCAGCTCAACAGGAAGTTTTTTAAAAATAGGGATAACATC-TCCCAGGCTCCTGAAGCCTGCTAATCAGATGTTTTTATGTACATGTTTATAAGCAATAACAAGGAAAGATGCTTTAGGTTGTGCCAACA--CCCA-TGGCAAAGAACTATAAAAGTCCCTGTGGGTTAGATGTCTTTGAAACTCAGCTATACTGAGTTTGCAACTCTGCAGCAAGGTTAGCGCCAGCACCATGGCAGGAAGCTGTTGTCCTGGAAATGCCAAGACCATGCCAGCTGTGCCCACCATCTCCATATGCCCACCTGGTGGAAGCTTCCAAAATGCTATCTGTGTGCCCAGTTCCTGCCAGAGCAGAACATGGCATCTGGTCACCTGCCAGGACAACTGTCAGCTCTCCAGCCATGTCTCAAATGGATGTGAACCCGCTTCCTGCCAATCTACCTGCCTTCCAGCAACTTCTTGTGTGGGACTTGTCTGCCAACCCATTTGCTCCCGCGCAGCTTGCTATGAATCTGGCACTGGTCAGTCTTCCTGTCTGGTTAGCTCACACCAGCCATCCTGCTCAGAGTCCATCAGTTGTCAGGCAAAGGCCTGTGATTCCAGCCCCTGCCAACAGAGCTCCTGCCAGGAAGCTGTCTGTGTGTCCAGAGCATGCCAGACAGCTTGTGGACAATCAGCTAGCAGTGACGCTAGATGCTGCCACCCATCCTGCTCCAAGGTAACTTCCTGTCCTGAAACTTCTTGCCAACCAACCATCTGTGTGTCTAGCCTGTGCCAGTCAACTTGCTGTCAA-GCAGATCATGTCCGCCCATTAATTGTGAAGGCCAGCCCTGCCAATCAACTTATTACCAACCCATATGCTACATTTTCAAGCCTTGCCAATCAGTTCCTCACATGCCTGTTGCCTGCCAGCCATCAATTT-TGCATTTAGTTCTTGCAATCCAACTTACTGTGTGGCCCTCCCCTTGCCAGCCATCTCACTGCCAACCAGCATCTTCCATCTCCTTCACCTGCCAGCCAGTGGCTATCTGCCAGTCCCCTTGTTCTATAAAGAACCCTTGCAAATCAGCTTCCTGTGGCACCATGCTTTCTGACCAACCAACTTGTGGTGGGTCCACTTTTTGCAACCTAAGTGGCTGCA---------------AATTCCCTCCCTTCCAACCGGCTTGCTGTGTGACAGGCTTAGACAAATCATCCAGTGGTTGCTCTAAATGGTTCCGACCGACTTCCCCAAGTTTCTGCAAAGAAAGCAGCTGTT-----------------------T------------------------------------------GTCA-------------------ACTTCCTGCCAGCCTGGTCATGAGTCCAGCTTCTGCAAGACAACACTTTATTAATGGAGCATTCTTCACACCCCCTCTGAGGATCTGCCACTGCTGGCAGGTGCAAAGCCACTCCATGGGTGC----TTGTCTCC-------TGCTGA----------------GCACAAATGCCACCTGCTTTCTAGGCTTGCTCAGAGT-----------------CCAAGTGTTGATGAGGGAAATTGTCCAGGTGC----TAAGAGATGTTTGCCTCTTAACCA
i dasNov3.JH570468          I 542 C 0

a score=4423330.000000
s hg38.chr17_JH159148v1_alt     5472 346 +     88070 AGAAT---AACCTTTCAGCAACCATGGACTACCACACTGCTGCTTGCATTTCCTGATGATGTCAATTCATTTCACTTTAGCAAA------------CCCT------------------CTCTTGTTTCTCTTTC--------TT--GATGCTGCCTGGTC-----TTTCAGAAGACCTC--GTTGCTGCCAGCTGCTAATAAAAATGTGACTGGTTAAGTATAATAAATAAGACTCCTGGAGTGCTTTCATTCCTAC--ACACACCTCTA-TGTAGATTTCCTTCAGGTCACATTT-GAACACAATGAGCCTGAGTCATCTAAGTCAGTGG-----------------------------------------------------------------------------------GTCTG----------CATTGGTCTGCAAGGGTAGCTAGTGTCTAGGATTATAGATTCTCCAGCTGGACGAGAGTAAGGG
s panTro5.chr17             16327657 346 +  83181570 AGAAT---AACCTTTCAGCAACCATGGACTACCACACTGCTGCTTGCATTTCCTGATGATGTCAATTCATTTCACTTTAGCAAA------------CCCT------------------CTCTTGTTTCTCTTTC--------TT--GATGCTGCCTGGTC-----TTTCAGAAGACCTC--GTTGCTGCCAGCTGCTAATAAAAATGTGACTGGTTAAGTATAATAAATAAGACTCCTGGAGTGCTTTCATTCCTAC--ACACACCTCTA-TGTAGATTTCCTTCAGGTCACATTT-GAACACAATGAGCCTGAGTCATCTAAGTCAGTGG-----------------------------------------------------------------------------------GTCTG----------CATTGGTCTGCAAGGGTAGCTAGTGTCTAGGATTATAGATTCTCCAGCTGGACGAGAGTAAGGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16232542 346 +  83442489 AGAAT---AACCTTTCAGCAACCATGGACTGCCACACTGCTGCTTGCATTTCCTGATGATGTCAATTCATTTCACTTTAGCAAA------------CCCT------------------CTCTTGTTTCTCTTTC--------TT--GATGCTGCCTGGTC-----TTTCAGAAGACCTC--GTTGCTGCCAGCTGCTAATAAAAATGTGACTGGTTAAGTATAATAAATAAGACTCCTGGAGTGCTTTCATTCCTAC--ACACACCTCTA-TGTAGATTTCCTTCAGGTCACATTT-GAACACAATGAGCCTGAGTCATCTAAGTCAGTGG-----------------------------------------------------------------------------------GTCTG----------CATTGGTCTGCAAGGGTAGCTAGTGTCTAGGATTATAGATTCTCCAGCTGGACGAGAGTAAGGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4068112 346 +   4267968 AGAAT---AACCTTTCAGCAACCATGGACTACCACACTGCTGCTTGCATTTCCTGATGATGTCAATTCATTTCACTTTAGCAAA------------CCCT------------------CTCTTGTTTCTCTTTC--------TT--GATGCTGCCTGGTC-----TTTCAGAACACCTC--GTTGCTGCCAGCTGCTAATAAAAATGTGACTGGTTAAGTATAATAAATAAGACTCCTGGAGTGCTTTCATTCCTAC--ACACACCTCTA-TGTAGATTTCCTTCAGGTCACATTT-GAACACAATGAGCCTGAGTCATCTAAGTCAGTGG-----------------------------------------------------------------------------------GTCTG----------CATTGGTCTGCAAGGGTAGCTAGTGTCTAGGATTATAGATTCTCCAGCTGGACGAGAGTAAGGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2047972 345 -   2193130 AGAAT---AACCTTTCAGCAACCATGGACTACCATAGTGCTGCTTGCATTTCCTGATGATGTCAATTCATTTCACTTTAGCAGA-------------CCT------------------CTCTTGTTTCTCTTTC--------TT--GATGCTGCCTGCTT-----TTTCAGAAGACCCC--TTTGCTGCCAGCTGCTAATAAAAATGTGACTGGTTAAGTATAACAAATAAGTATCGTGGAGTGCTTTCATTCCTAC--GCACACCCCTA-TGTAGATTTCCTTCAGGTCACATTT-GAACACAATGAGCTTGAGTCATCTAAGTCAGTGG-----------------------------------------------------------------------------------GTCTG----------CATTGATCTGCAAGGGTAGCTGGTGTCTAGGATTATAGATTCTCCAGCTGGACGAGAGTAAAGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30122006 345 -  77216781 AGAAT----ACCTTTCAGCAACCATGGACTATCACACTGCTGCTTGCATTTCCTGATGATGTCAATTCATTTCACTTTAGCAAA------------TCCT------------------CTCTTGTTTATCTTTC--------TT--GATGCTGCCTGGTC-----TTTCAGAAGACCCT--TTTGCTGCTAGCTGCTAATAAAAATGTGACTGGTTAAGTATGATAAATAAGACTCTTGGAGTGCTTTCATTCCTAC--GCTCACCCCTA-TGTAGATTTCCTTCAGGTCACATTT-GAGCACAATGAGCTTGAGTCATCTAAGTCAGTGG-----------------------------------------------------------------------------------GTCTG----------CATTGGTCTGCAAGGGTAGCTGGTGTCTAGGATTATAGATTCTCCCGCTGGACGAGAGTAAGGG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28034866 345 -  80997621 AGAAT----ACCTTTCAGCAACCATGGACTATCACACTGCTGCTTGCATTTCCTGATGATGTCAATTCATTTCACTTTAGCAAA------------TCCT------------------CTCTTGTTTATCTTTC--------TT--GATGCTGCCTGGTC-----TTTCAGAAGACCCT--TTTGCTGCTAGCTGCTAATAAAAATGTGACTGGTTAAGTATGATAAATAAGACTCTTGGAGTGCTTTCATTCCTAC--GCTCACCCCTA-TGTAGATTTCCTTCAGGTCACATTT-GAGCACAATGAGCTTGAGTCATCTAAGTCAGTGG-----------------------------------------------------------------------------------GTCTG----------CATTGGTCTGCAAGGGTAGCTGGTGTCTAGGATTATAGATTCTCCCGCTGGACGAGAGTAAGGG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2091461 345 +  10377808 AGAAT----ACCTTTCAGCAACCATAGACTATCACACTGCTGCTTGCATTTCCTGATGATGTCAATTCATTTCACTTTAGCAAA------------TCCT------------------CTCTTGTTTATCTTTC--------TT--GATGCTGCCTGGTC-----TTTCAGAAGACCCT--TTTGCTGCTAGCTGCTAATAAAAATGTGACTGGTTAAGTATGATAAATAAGACTCTTGGAGTGCTTTCATTCCTAC--GCTCCCCCCTA-TGTAGATTTCCTTCAGGTCACATTT-GAGCACAATGAGCTTGAGTCATCTAAGTCAGTGG-----------------------------------------------------------------------------------GTCTG----------CATTGGTCTGCAAGGGTAGCTGGTGTCTAGGATTATAGATTCTCCCGCTGGACGAGAGTAAGGG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1976881 345 -   8458610 AGAAT----ACCTTTCAGCAACCATGGACTATCACACTGCTCCTTGCATTTCCTGATGATGTCAATTCATTTCACTTTAGCAAA------------TCCT------------------CTCTTGTTTATCTTTC--------TT--GATGCTGCCTGGTC-----TTTCAGAAGACCCT--TTTGCTGCTAGCTGCTAATAAAAATGTGACTGGTTAAGTATGATAAATAAGACTCTTGGAGTGCTTTCATTCCTAC--GCTCACCCCTA-TGTAGATTTCCCTCAGGTCACATTT-GAGCACAATGAGCTTGAGTCATCTAAGTCAGTGG-----------------------------------------------------------------------------------GTCTG----------CATTGGTCTGCAAGGGTAGCTGGTGTCCAGGATTATAGATTCTCCCGCTGGACGAGAGTAAGGG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64921151 346 +  75148670 AGAAT---AACCTTTCAGCAACCATGGACTACTACACTGCTGCTTGCATTTCCTGATGATGTCAATTCATTTCATTTTAGCAGA------------TCCT------------------CTCTTGTTTATCTTTC--------TT--GATGCTGCCTGGTC-----TTTCAGAAGACCCC--TTTGCTGCTAGCTGCTAATAAAAATGTGACTGGTTAAGTATAATAAATAAGACTCTTGGAGTGCTTTCATTCCTAC--GCGCACCCCTA-TGTAGATTTCCTTCAGGTCACATTT-GAGCACAATGAGCTTGAGTCATCTAAGTCAGTGG-----------------------------------------------------------------------------------GTCTG----------CATTGGTCTGCAAGGGTAGCTGGTGTCTAGGATTATAGATTCTCCAGCTGGACGAGAGTAAGGG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2161181 346 +   4244037 AGAAT---AACCTTTCAGCAACCATGGACTATCACACTGCTGCTTGCATTTCCTGATGATGTCAATTCATTTCACTTTAGCAAA------------TCCT------------------CTCTTGTTTATCTTTC--------TT--GATGCTGCCTGGTC-----TTTCAGAAGACCCC--TTTGCTGCTAGCTGCTAATAAAAATGTGACTGGTTAAGTATGATAAATAAGACTCTTGGAGTGCTTTCATTCCTAC--GCTCACCCCTA-TGTAGATTTCCCTCAGGTCACATTT-GAGCACAATGAGCTTGAGTCATCTAAGTCAGTGG-----------------------------------------------------------------------------------GTCTG----------CATTGGTCTGCAAGGGTAGCTGGTGTCTAGGATTATAGATTCTCCCGCTGGACGAGAGTAAGGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2184187 345 +   4569836 AGAAT---AACCTTTCAGCAACCATGGACTACCACACTGCTGCTTGCATTTCCTGATGATGTCAATTCATTTCACTTTAGCAAA------------TCCT------------------CTCTTGTTCATCTTTC--------TT--GATGCTGCCTGGTC-----TTTCAGAAGACCCC--TTTGCTGCTAGCTGCTAATAAAAATGTGACAGCTTAAGTATGATAAATAAGACTCTTGGAGTACTTTCATTCCTAC--GCATA-CCCTA-TGTAGATTTCCTTCAGGTTGCATTT-GAGCACAATGAGCTTGAGTTATCTAAGTCAGTTG-----------------------------------------------------------------------------------GTCTG----------CATTGGTCTGCAAGGGTAGCTGGTGTCTAGGATTGTAGATGCTCCAGCTGGACGAGAGTAAGGA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46140315 346 - 159171411 agaaT---AACCTTTCAGCAACCGTGGACTACCACACTGCTGCTTGCATTTCCTGATGATGTCAATTCATTTCACTTTAGCAAA------------CCCT------------------CTCTTGTTTCTCTTTC--------TT--GATGCTGCCTGGTC-----TTTCAGAAGACTCC--TTTGCTGCCAGTTGCTAATAAAAATGTGACTGGTTAAGTATAATAAATAAGATTTTTGGAGTGCTTTCATTCCTGC--ACACACTCCTA-TTTAGATTTCCTTCAGGTCACATTT-GAACACAATGAGCTTGAGTCATCTAAGTCAGTGG-----------------------------------------------------------------------------------GTCTG----------CACTGGTCTACAGGGGTAGCTGGAATCTAGGATTATAGATTCTCCAGCTGGAAGAGAGTAAGGG
i calJac3.chr5              I 307 C 0
s saiBol1.JH378271           1849681 339 +   3513951 AGAAT---AACCTTTCAGCAACTGTGGACTACCACACTACTGCTTGCATTTCCTGATGATGTCAATTCATTTCACTTT---AAA------------ACCT------------------CTCTTGTTTCTTTTTC--------TT--GATGCTGCCTCGTC-----TTTCAGAAGACTCC--TTTGCTGCCAGCTGCTAATAAAAATG----TGGTTAGGTGTAATAAATAAGACTTTTGGAGTGCTTTCATTCCTGC--ACACACCCCTA-TGTAGATTTCCTTCAGGTCACATTT-GAACACAACGAGCTTGAGTCATCTAAGTCAGTGG-----------------------------------------------------------------------------------GTCTG----------CAGTGGTCTACAAGGGGAGCTGGTATCTGGGATTATAGATTCTCCAGCTGGAAGACAGTAAGAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1900801 347 +   1920343 AGAAT---AACCTTTCAGCAACCATGGACTACCACACTGCTGCTTGCGTTACCTGATGATGTCAATTCATTTCACTTTGGCAAA------------CCCT------------------CTCTTGTTTCTCTTTC--------TT--GATGCTGCCTGGTC-----TTTCAGAAGACTCC--TTTGCTGCCAGCTGCTAATAAAAATGTAACTGGTTAAGTGGAATGAATAAGACTTTTGGAGTGCTTTCATTCCTGC--ACACACCCCTAGGGTAGATTTCCTTCAGGTCACATTT-GAACACAATGAGCTTGAGTCATCTAAGTCAGTGG-----------------------------------------------------------------------------------GTCTG----------CAGTGGTCTACAAGGGTAGCTGCTATCTAAGATTATAGATTCTCCAGCTGGAAGAGAGTAAGGG
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7014715 346 -   7032639 AGAAT---AATCTTTCAGCAACCGTGGACTACCACACTGCTGCTCGCATTTCCTGTTGATGTCAATTCATTTCACTTTAGCAAA------------CCCT------------------CTCTTGTTTCTCTTTC--------TT--GATGCTGCCTGGTC-----TTTCAGAAGACTCC--TTTGCTGCCAGCTGCTAATAAAAATGTGACTGGTTAAGTGTAATAAATAAGACTTTTGGAGTGCTTTCATTCCTGC--ACACACCCCTA-TGTAGATTTCCTTCAGGTCACATTT-GAACACAATGAGCTTGAGTCATCTAAGTCAGTGG-----------------------------------------------------------------------------------GTCTG----------CAATGGTCTACAAGGGTAGCTGCTATCTAGGATTATAGATTCTCCAGCTGGAAGAGAGTAAGGG
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22842186 340 +  28711273 AGGAT---TATCTTTCAGCAAGCATGGTC---CGCTCTGTACCTTGCATTTCC---TGATGTCAATTCATTTTATTTCAGCAAA------------ATCT-------------------TCTCATTTTTCTTCCTTTTGATTTT--GATGATGCTTGGTC-----TTTCAGAAGACTCCTGTTGGCTGCCAGATGGTAATAAAAATGTGAATGATTAAGTATAATGAGTAAGACTCTTGAAGTGCTTTCATTCCTAG--ATACACACCTG-CATAGATTTCCTTCAGGTCACCCTT-GAACACAATGACCTTGGGCTGTCTACGTGTGTGG-----------------------------------------------------------------------------------GTCTG----------CATTGGTCT---------GTTGGTGTCTAGAATTATAGAGGCTCAAGCTGGAAAAAGGAAGGAG
i otoGar3.GL873537          C 0 I 1560
s mm10.chr11                22104768 328 - 122082543 AGGGT---GGCCTGTCAGCAGGCATGGTCTGCCTTTC--CAGCATGCATTTCC---TGATGTCAGTTCATTTCATGTCAGCAAA------------ACCTTCTCTCCAATTCTCCTTTCTTTTGATTTTTTTTT--------TT--TTTG--GCCTGGTCTTTCTTTTCTGGAGATGCT--TTTGCTGCCAGCGGCTAATAAAAATTTGAGTGGTTAAGTTTACCAAGTAAGACTTACAGACTGCTTTCATT----------------TA----------------GGTCACATTT-AAACACACTGACCCGGAGCCCCCTG-GTTGGAAA-----------------------------------------------------------------------------------ATCTG----------CATTAATCTACATGGGTAGCAGGTATCTGAAACTATAGATGCTCAAGCCGTGAGAAAGGA----
i mm10.chr11                C 0 C 0
s canFam3.chr9              21455495 350 +  61074082 AGGAG---AAAGTTTCAGCAAGCACGGTC---CACGCTACAGCTTGCATTTGCTCATGTTATCATTTCATTTCACCTCCGCAAA---------ACCTCCT------------------CTCCGGCTTTTCTTTC------ATTT--GATGTTGCCCAGTC-----TTTAAAAAGACTTC--TCTGATGTCAATTGCCAATAAAACTGTGAGTGGTTAAACATCATGAATAAAACTCTCAGAATGCTTTCATTCCTTTCAATATACCCCCA-CATAGATTTCCTTCAGATCACATTT-GAACATGATGACCTTGGCCTCTCTAAATTAGTGG-----------------------------------------------------------------------------------GTCCG----------CCGTGGTCTGAAAGGGTGGTTGGTATCTGCATTTATCGATTCTCAAGTTGGAAGGGAGAAAGAA
i canFam3.chr9              C 0 I 4
s dasNov3.JH570468            458547 445 -    852752 AGGATGGAGGCCCTTCTGCAATAATGGTC---CACACTATAGCTGGCATTTCCTTATGTTGTCAATTCATTTCATTTTAGCAACAACTTCAACAACTTCT------------------TTCTAGTTTTTCTTTG--------TTTAGATGCTGCCTGTTC-----TTTAAGAAGAATCC--TTTCCTGTCAACTACTAATGAAAATGTAAC----TAAACATAATAAATATGACTTTCAGAGCTCGTT-ATTCTTTTCAATACATCCCTA-CGTGGATTTCTGTCAGGTCATATTTGGAACACAATGACTTTGGGCTTTCTAAGTCAGTGGCCACCCACTTTTCTCTGCCCCAGTGCTGTCTTGGGAAATAACACTCAGTCGTCTTTAGAATACAGTGTTTTCCACCAGGGGTCGTCAGAGAGTATGCTCATTGGTCTGCTTGGGCATCTGGTGTCTAGAATTATA----CTCAAACTGGAAGGGACTGAG--
i dasNov3.JH570468          C 0 C 0

a score=377753.000000
s hg38.chr17_JH159148v1_alt     5818 30 +     88070 CAAACAGTTCACTGGCTTCCAAAATTTTCA
s panTro5.chr17             16328003 30 +  83181570 CAAACAGTTCACTGGCTTCCAAAATTTTCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16232888 30 +  83442489 CAAACAGTTCACTGGCTTCCAAAATTTTCA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4068458 30 +   4267968 CAAACAGTTCACTGGCTTCCAAAATTTTCA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2048317 30 -   2193130 CAAACAGTTCACTGGCTTCCAAAATTTTCA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30122351 30 -  77216781 CGAACAGTTCACTGGCTTCCAAAATTTTCA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28035211 30 -  80997621 CGAACAGTTCACTGGCTTCCAAAATTTTCA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2091806 30 +  10377808 CGAACAGTTCACTGGCTTCCAAAATTTTCA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1977226 30 -   8458610 CGAACAGTTCACTGGCTTCCAAAATTTTCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64921497 30 +  75148670 CAAACAGTTCACTGGCTTCCAAAATTTTCA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2161527 30 +   4244037 CGAACAGTTCACTGGCTTCCAAAATTTTCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2184532 30 +   4569836 CGAACAGTTCACTGGCTTCCAAAATTTTTA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46140661 29 - 159171411 CAAACAGTTCACTGGCTTCTGAAA-TTTCA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1850020 30 +   3513951 CAAACAGTTCACTGGCTTCAGAAATTTTCA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1901148 30 +   1920343 CAAACAGTTCACTGGCTTCCGAAATTTTCA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7015061 30 -   7032639 CAAACAGTTCACTGGCTTCCGAAATTTTCA
i aotNan1.NW_018502359v1    C 0 C 0
s mm10.chr11                22105096 30 - 122082543 CAAGTAGCTTGCTTATTTTTAACCTTCTTA
i mm10.chr11                C 0 C 0
s canFam3.chr9              21455849 30 +  61074082 CAAACAATCCCCTGGCTTCCAATTTTTATA
i canFam3.chr9              I 4 C 0
s dasNov3.JH570468            458992 28 -    852752 --AACAGTTCACTGGCTtctagacttccca
i dasNov3.JH570468          C 0 I 1557
e otoGar3.GL873537          22842526 1560 +  28711273 I

a score=1234315.000000
s hg38.chr17_JH159148v1_alt     5848 110 +     88070 CCACCAAGAGTTCTTTTGAGCTGAGTGGGCTCATTTTCCCTATAGTGAGTAGA--C--AGGAAGCCAACAACAAAAATGGTTCTGGAAAGCCACAGATGAAAACAAACATGAGG
s panTro5.chr17             16328033 110 +  83181570 CCACCAAGAGTTCTTTTGAGCTGAGTGGGCTCATTTTCCCTATAGTGAGTAGA--C--AGGAAGCCAACAACAAAAATGGTTCTGGAAAGCCACAGATGAAAACAAACATGAGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16232918 110 +  83442489 CCACCAAGAGTTCTTTTGAGCTGAGTGGGCTCATTTTCCCTATAGTGAGTAGA--C--AGGAAGCCAACAACAAAAATGGTTCTGGAAAGCCACAGATGAAAACAAACATGAGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4068488 110 +   4267968 CCACCAAGAGTTCTTTTGAGCTGAGTGGGCTCATTTTCCCTATAGTGAGTAGA--C--AGGAAGCCAACAACAAAAATGGTTCTGGAAAGCCACAGATGAAAACAAACATGAGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2048347 110 -   2193130 CCACCAAGAGTCCTTTTGAGCTGAGTGGGCTCACTTTCCCCATAGTGAGTAGA--C--AGGAAGCTAACAACAAAAATGGTTCTGGAAAGCCACAGATGAAAACAAACATGAGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30122381 110 -  77216781 GCACCAAGGATTCTTTTGAGCTGAGTGGGCTCACTTTCCCCACAGTGAGTAGA--C--AGGAAGTCAACAGCAAAAATGGTTCTGGAAAGCCACAGATGAAAACAAACATGAGG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28035241 110 -  80997621 GCACCAAGGATTCTTTTGAGCTGAGTGGGCTCACTTTCCCCACAGTGAGTAGA--C--AGGAAGTCAACAGCAAAAATGGTTCTGGAAAGCCACAGATGAAAACAAACATGAGG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2091836 110 +  10377808 GCACCAAGGATTCTTTTGAGCTGAGTGGGCTCACTTTCCCCACAGTGAGTAGA--C--AGGAAGTCAACAGCAAAAATGGTTCTGGAAAGCCACAGATGAAAACAAACATGAGG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1977256 110 -   8458610 GCACCAAGGATTCTTTTGAGCTGAGTGGGCTCACTTTCCCCACAGTGAGTAGA--C--AGGAAGTCAACAGCAAAAATGGTTCTGGAAAGCCACAGATGAAAACAAACATGAGG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64921527 110 +  75148670 GCACCAAGAGTTCTTTTGAGCTGAGTGGGCTCACTTTCCCTACAGTGAGTAGA--C--AGGAAGTCAACAGCAAAAATGTTTCTGGAAAGCCACAGATGAAAACAAACATGAGG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2161557 110 +   4244037 GCACCAAGGATTCTTTTGAGCTGAGTAGGCTCACTTTCCCCACAGTGAGTAGA--C--AGGAAGTCAACAGCAAAAATGGTTCTGGAAAGCCACAGATGAAAACAAATATGAGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2184562 110 +   4569836 GCACCAAGAGTTCTTTTGAGCTGAGTGGGCTCACTTTCCCCACAGTGAGTAGA--C--AGGAAGTCAACAGCAAAAATGGTTCTGGAAAGCCACAGATGAAAACAAACATGAGG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46140690 110 - 159171411 CCACCAAGTGTTCTTTTGAGCTAAGTGGGCTCAGTCTCCCCATAGTGAGTAGA--C--AGGAAGCCAATAACAAAAATGGTTTTGGGAAGCCACAGACAAAAGCAAGCATGAAG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1850050 110 +   3513951 CCACCAAGAGTTCTTTTGAGCTGCGTGGGTGCAGTTTCTCCGTAATGAGTAGA--C--AGAAAGCCAACAACAAAAATGGTTTTGGAAAGCCACAGACAAAAGCAAGCATGAAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1901178 110 +   1920343 CCACCAAGAGTTCTTTGGAGCTGAGTGGGCTCAGTCTCCCCATAATAAGTAGA--C--AGAAAGCCAACAACAAAAATGGTTTTGGAAAGCCACAGACAAAAACAGGCATGAAG
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7015091 110 -   7032639 CCACCAAGAGTTCTTTTGAGCTGAGTGGGCTCAGTCTCCCCATAGTGAGTAGA--C--AGGAAGTCAACAACAAAAATGGTTTTGGAAAGCCACAGACAAAAACAAGCGTGAAG
i aotNan1.NW_018502359v1    C 0 C 0
s mm10.chr11                22105126 112 - 122082543 TCACCAAGAGCTCTTTGGAACTGAGTGGCCTTAGTTTCCTCATGATGAGTGGATTT--GAAAAACCCGAAACAGAGATAATTCAGGAGAGCTATAGATGATTATAAACCTATGG
i mm10.chr11                C 0 I 5401
s canFam3.chr9              21455879 110 +  61074082 CCATCAAAAGCT-TTTTGAATTGGGTGGATTCCATCTCCCCACAGTGAACAGA--CTTGGAAAGCCAAAGACAGAAATGGTCTAGGGAAGCCACAGACTAAAATAAACAAAGG-
i canFam3.chr9              C 0 C 0
e dasNov3.JH570468            459020 1557 -    852752 I
e otoGar3.GL873537          22842526 1560 +  28711273 I

a score=339393.000000
s hg38.chr17_JH159148v1_alt     5958 32 +     88070 TATTGGCCATAGAGAATAGCTTAGGGTTAATT
s panTro5.chr17             16328143 32 +  83181570 TATTGGCCATAGAGAAAAGCTTAGGGTTAATT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16233028 32 +  83442489 TATTGGCCATAGAGAATAGCTTAGGGTTAATT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4068598 32 +   4267968 TATTGGCCATAGAGAATAGCTTAGGGTTAATT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2048457 32 -   2193130 TATTGGCCATGGAGAATAGCTTAGGGTTAATT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30122491 32 -  77216781 TATTGGCCATGGAGAATTGCTTAGGGTTAATT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28035351 32 -  80997621 TATTGGCCATGGAGAATTGCTTAGGGTTAATT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2091946 32 +  10377808 TATTGGCCATGGAGAATTGCTTAGGGTTAATT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1977366 32 -   8458610 TATTGGCCATGGAGAATTGCTTAGGGTTAATT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64921637 32 +  75148670 TATTGGCCATGGAGAATTGCTTAGGGTTAATT
i chlSab2.chr16             C 0 I 2570
s manLeu1.NW_012106252v1     2161667 32 +   4244037 TATTGGCCATGGAGAATTGCTTAGGGTTAATT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2184672 32 +   4569836 TATTGGCCATGGAGAATTGCTTAGGGTTAATT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46140800 32 - 159171411 TGTTGGCCATGGAGAATCACTTAGGGTTAATT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1850160 32 +   3513951 TGTCAGCCATGGAGAATCGCTTAGGGTTAATT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1901288 32 +   1920343 TGTCGGCCATGGAGAATTGCTTAGGGTTAATT
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7015201 32 -   7032639 TGTCGGCCATGGAGAAGCGCTTAGGGTTAATT
i aotNan1.NW_018502359v1    C 0 C 0
s canFam3.chr9              21455989 31 +  61074082 -TTTGACCATCAATAATAGCTAAGGGTTTATG
i canFam3.chr9              C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e dasNov3.JH570468            459020 1557 -    852752 I
e otoGar3.GL873537          22842526 1560 +  28711273 I

a score=1707.000000
s hg38.chr17_JH159148v1_alt     5990 2 +     88070 CA-
s panTro5.chr17             16328175 2 +  83181570 CA-
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16233060 2 +  83442489 CA-
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4068630 2 +   4267968 CA-
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2048489 2 -   2193130 CA-
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s colAng1.NW_012122154v1     2184704 2 +   4569836 CA-
i colAng1.NW_012122154v1    C 0 I 2540
s calJac3.chr5              46140832 2 - 159171411 TA-
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1850192 2 +   3513951 TA-
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1901320 2 +   1920343 TA-
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7015233 2 -   7032639 TA-
i aotNan1.NW_018502359v1    C 0 C 0
s canFam3.chr9              21456020 2 +  61074082 -AA
i canFam3.chr9              C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e manLeu1.NW_012106252v1     2161699 0 +   4244037 C
e dasNov3.JH570468            459020 1557 -    852752 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e chlSab2.chr16             64921669 2570 +  75148670 I
e cerAty1.NW_012006043v1     1977398 0 -   8458610 C
e macNem1.NW_012014910v1     2091978 0 +  10377808 C
e macFas5.chr16             28035383 0 -  80997621 C
e rheMac8.chr16             30122523 0 -  77216781 C

a score=-12992.000000
s hg38.chr17_JH159148v1_alt     5992 15 +     88070 TTTAA----GAttcttttt-
s panTro5.chr17             16328177 10 +  83181570 TTTAA----GAttc------
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16233062 10 +  83442489 TTTAA----GAttc------
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4068632 11 +   4267968 TTTAA----GAttc----t-
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2048491  8 -   2193130 TTTAA----GAt--------
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30122523  9 -  77216781 --CAA---tttttt------
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28035383  6 -  80997621 --CAA------ttt------
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2091978  5 +  10377808 --CAA-------tt------
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1977398  5 -   8458610 --CAA-------tt------
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2161699  5 +   4244037 --CAA-------tt------
i manLeu1.NW_012106252v1    C 0 C 0
s calJac3.chr5              46140834 10 - 159171411 CCTAA----GGTTC------
i calJac3.chr5              C 0 I 1636
s saiBol1.JH378271           1850194 10 +   3513951 CTTAA----GATTC------
i saiBol1.JH378271          C 0 I 1611
s cebCap1.NW_016107730v1     1901322 10 +   1920343 CTTAA----GATTC------
i cebCap1.NW_016107730v1    C 0 I 5
s aotNan1.NW_018502359v1     7015235 10 -   7032639 CTTAA----GATTC------
i aotNan1.NW_018502359v1    C 0 I 1646
s canFam3.chr9              21456022 15 +  61074082 CTTAACACTGtttt-----t
i canFam3.chr9              C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e dasNov3.JH570468            459020 1557 -    852752 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e colAng1.NW_012122154v1     2184706 2540 +   4569836 I
e chlSab2.chr16             64921669 2570 +  75148670 I

a score=546.000000
s hg38.chr17_JH159148v1_alt     6007 1 +     88070 t
s gorGor5.CYUI01015385v1     4068643 1 +   4267968 t
i gorGor5.CYUI01015385v1    C 0 C 0
s cebCap1.NW_016107730v1     1901337 1 +   1920343 T
i cebCap1.NW_016107730v1    I 5 I 1630
s canFam3.chr9              21456037 1 +  61074082 t
i canFam3.chr9              C 0 I 3
e mm10.chr11                22105238 5401 - 122082543 I
e aotNan1.NW_018502359v1     7015245 1646 -   7032639 I
e manLeu1.NW_012106252v1     2161704 0 +   4244037 C
e dasNov3.JH570468            459020 1557 -    852752 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e saiBol1.JH378271           1850204 1611 +   3513951 I
e calJac3.chr5              46140844 1636 - 159171411 I
e colAng1.NW_012122154v1     2184706 2540 +   4569836 I
e chlSab2.chr16             64921669 2570 +  75148670 I
e cerAty1.NW_012006043v1     1977403 0 -   8458610 C
e macNem1.NW_012014910v1     2091983 0 +  10377808 C
e macFas5.chr16             28035389 0 -  80997621 C
e rheMac8.chr16             30122532 0 -  77216781 C
e nomLeu3.chrUn_GL397460_1   2048499 0 -   2193130 C
e panPan2.chr17             16233072 0 +  83442489 C
e panTro5.chr17             16328187 0 +  83181570 C

a score=71775.000000
s hg38.chr17_JH159148v1_alt     6008 25 +     88070 ttttttttttttttttgacacagag
s panTro5.chr17             16328187 22 +  83181570 ---tttttttttttttgacacagag
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16233072 22 +  83442489 ---ttttttttttttgtacacagag
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4068644 25 +   4267968 ttttttttttttttttgacacagag
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2048499 22 -   2193130 ---tttttttttttttgatacggag
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30122532 22 -  77216781 ---tttttttttttttgagatgggt
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28035389 22 -  80997621 ---tttttttttttttgagatgggt
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2091983 22 +  10377808 ---tttttttttttttgagatgggt
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1977403 22 -   8458610 ---tttttttttttttgagatgggt
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2161704 22 +   4244037 ---tttttttttttttgaggtgggt
i manLeu1.NW_012106252v1    C 0 C 0
s canFam3.chr9              21456041 25 +  61074082 agatttttaattttatgagagagag
i canFam3.chr9              I 3 I 1456
e mm10.chr11                22105238 5401 - 122082543 I
e aotNan1.NW_018502359v1     7015245 1646 -   7032639 I
e cebCap1.NW_016107730v1     1901338 1630 +   1920343 I
e dasNov3.JH570468            459020 1557 -    852752 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e saiBol1.JH378271           1850204 1611 +   3513951 I
e calJac3.chr5              46140844 1636 - 159171411 I
e colAng1.NW_012122154v1     2184706 2540 +   4569836 I
e chlSab2.chr16             64921669 2570 +  75148670 I

a score=332392.000000
s hg38.chr17_JH159148v1_alt     6033 90 +     88070 tttcactcttgttgcccaggctggagtgcaagagcgtgatctcggcccaccgcaacctctgcctcctgggttcaagcgattctcctgcct
s panTro5.chr17             16328209 90 +  83181570 tttcactcttgttgcccaggctggagtgcaagagcgtgatctcggcccactgcaacctctgcctcctgggttcaagcaattctcctgcct
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16233094 90 +  83442489 tttcactcttgttgcccaggctggagtgcaagagcgtgatctcggcccactgcaacctctgcctcctgggttcaagcaattctcctgcct
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4068669 90 +   4267968 tttcactcttgttgcccaggctggagtgcaagagcgtgatctcggcccaccgcaacatctgcctcctgggttcaagcgattctcctgcct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2048521 90 -   2193130 tttcactcttgctgcccaggctggagtgcaagagcgtgatctccggccaccacaacctctgcctcctgggttcaagcgattctcctgcct
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30122554 90 -  77216781 ttttgctcttattgcccaggctggagtgcaatggcatgatctcagctcactgcaacctccacctcccagattcaagcaattctcctgcct
i rheMac8.chr16             C 0 I 2429
s macFas5.chr16             28035411 90 -  80997621 ttttgctcttattgcccaggctggagtgcaatggcatgatctcagctcactgcaacctccacctcccagattcaagcaattctcctgcct
i macFas5.chr16             C 0 I 2426
s macNem1.NW_012014910v1     2092005 90 +  10377808 ttttgctcttattgcccaggctggagtgcaatggcatgatctcagctcactgcaacctccacctcccagattcaagcaattctcctgcct
i macNem1.NW_012014910v1    C 0 I 2429
s cerAty1.NW_012006043v1     1977425 90 -   8458610 ttttgctcttattgcccaggctggagtgcaatggcatgatctcagctcactgcaacctccacctcccagattcaagcaattctcctgcct
i cerAty1.NW_012006043v1    C 0 I 2416
s manLeu1.NW_012106252v1     2161726 90 +   4244037 ttttgctcttattgcccaggctggagtgcaatggcatgatctcagctcactgcaacctccacctcccagattcaagcaattctcctgcct
i manLeu1.NW_012106252v1    C 0 I 2388
e mm10.chr11                22105238 5401 - 122082543 I
e aotNan1.NW_018502359v1     7015245 1646 -   7032639 I
e cebCap1.NW_016107730v1     1901338 1630 +   1920343 I
e canFam3.chr9              21456066 1456 +  61074082 I
e dasNov3.JH570468            459020 1557 -    852752 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e saiBol1.JH378271           1850204 1611 +   3513951 I
e calJac3.chr5              46140844 1636 - 159171411 I
e colAng1.NW_012122154v1     2184706 2540 +   4569836 I
e chlSab2.chr16             64921669 2570 +  75148670 I

a score=3000.000000
s hg38.chr17_JH159148v1_alt     6123 3 +     88070 GGG
s panTro5.chr17             16328299 3 +  83181570 GGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16233184 3 +  83442489 GGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4068759 3 +   4267968 GGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2048611 3 -   2193130 GGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e aotNan1.NW_018502359v1     7015245 1646 -   7032639 I
e cebCap1.NW_016107730v1     1901338 1630 +   1920343 I
e canFam3.chr9              21456066 1456 +  61074082 I
e manLeu1.NW_012106252v1     2161816 2388 +   4244037 I
e dasNov3.JH570468            459020 1557 -    852752 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e saiBol1.JH378271           1850204 1611 +   3513951 I
e calJac3.chr5              46140844 1636 - 159171411 I
e colAng1.NW_012122154v1     2184706 2540 +   4569836 I
e chlSab2.chr16             64921669 2570 +  75148670 I
e cerAty1.NW_012006043v1     1977515 2416 -   8458610 I
e macNem1.NW_012014910v1     2092095 2429 +  10377808 I
e macFas5.chr16             28035501 2426 -  80997621 I
e rheMac8.chr16             30122644 2429 -  77216781 I

a score=121230.000000
s hg38.chr17_JH159148v1_alt     6126 11 +     88070 acattgtgtca
s panTro5.chr17             16328302 11 +  83181570 acattgtgtca
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16233187 11 +  83442489 acattgtgtca
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4068762 11 +   4267968 acattgtgaca
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2048614 11 -   2193130 acattgtgtca
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30125073 11 -  77216781 acattgtgtca
i rheMac8.chr16             I 2429 C 0
s macFas5.chr16             28037927 11 -  80997621 acattgtgtca
i macFas5.chr16             I 2426 C 0
s macNem1.NW_012014910v1     2094524 11 +  10377808 acattgtgtca
i macNem1.NW_012014910v1    I 2429 C 0
s cerAty1.NW_012006043v1     1979931 11 -   8458610 acattgtgtca
i cerAty1.NW_012006043v1    I 2416 C 0
s chlSab2.chr16             64924239 11 +  75148670 acattgtgtca
i chlSab2.chr16             I 2570 C 0
s manLeu1.NW_012106252v1     2164204 11 +   4244037 acattgtgtca
i manLeu1.NW_012106252v1    I 2388 C 0
s colAng1.NW_012122154v1     2187246 11 +   4569836 acattgtgtca
i colAng1.NW_012122154v1    I 2540 C 0
s calJac3.chr5              46142480 11 - 159171411 acattgtgtca
i calJac3.chr5              I 1636 C 0
s saiBol1.JH378271           1851815 11 +   3513951 acattgtgtca
i saiBol1.JH378271          I 1611 C 0
s cebCap1.NW_016107730v1     1902968 11 +   1920343 acattgtgtca
i cebCap1.NW_016107730v1    I 1630 C 0
s dasNov3.JH570468            460577 11 -    852752 acattgtgtca
i dasNov3.JH570468          I 1557 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e aotNan1.NW_018502359v1     7015245 1646 -   7032639 I
e canFam3.chr9              21456066 1456 +  61074082 I
e otoGar3.GL873537          22842526 1560 +  28711273 I

a score=2153957.000000
s hg38.chr17_JH159148v1_alt     6137 220 +     88070 gctggctaaggagaaatattcataggatccctttgtattatcatagagcaggcaatgaag-ggtgtacctgtaggtgagcagcaataatttggtaactagcaAACAAATCTTCATAGTTCACA------TTTTTCTGTCACTGAGGTATACTTTGGATCTGTAGAGAGACTATTAATTGTTTTATCCCCAGTTTTAGAATCACAAGGGTCGTAGTCTTGAAAGAAGG
s panTro5.chr17             16328313 220 +  83181570 gctggctaaggagaaatattcataggatcactttgtattatcatagagcaggcaatgaag-ggtgtacctgtaggtgagcagcaataatttggtaactagcacaCAAATCTTCATAGTTCACA------TTTTTCTGTCACTGAGGTATACTTTGGATCTGTAGAGAGACTATTAATTGTTTTATCCCCAGTTTTAGAATCACAAGGGTCGTAGTCTTGAAAGAAGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16233198 220 +  83442489 gctggctaaggagaaatattcataggatcactttgtattatcatagagcaggcaatgaag-ggtgtacctgtaggtgagcagcaataatttggtaactagcacaCAAATCTTCATAGTTCACA------TTTTTCTGTCACTGAGGTATACTTTGGATCTGTAGAGAGACTATTAATTGTTTTATCCCCAGTTTTAGAATCACAAGGGTCGTAGTCTTGAAAGAAGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4068773 220 +   4267968 ggtggctaaggagaaatattcataggatccctttgtattatcacagagcaggcaatgaag-ggtgtacctgtaggtgagcagcaataatttggtaactagcacaCAAATCTTCATACTTCACA------TTTTTCTGTCACTGAGGTATACTTTGGATCTGTAGAGAGACTATTAATTGTTTTATCCCCAGTTTTAGAATCACAAGGGTCGTAGTCTTGAAAGAAGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2048625 220 -   2193130 gctggctaaggagaaatattcataggatccctctgtattatcatagagcaggcaatgaag-tatatacttgtaggtgagcagcaataatttggtaaatagcacaTACATCTTCATAGTTCACA------TTTTTCTATCACTGATGTATACTTTGGATCTGTAGAGAGATAATTATTGGTTCTATCCCCAGTTTTAGAATTACAAGTGTGGTAGTCATGAAAGAAGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30125084 222 -  77216781 gctggccaaggagaaatattcataggatccctctgtattatcatagagcaggcaatgaag-ggtgtacttgtaggtgagcagcaataatttagtaactagaacaCAAATCTTCATAGTTCACA----TTTTTTTTTGTCACTGATGTATACTTTGGAGCTGTAGAGAGATTATTAGTGGTTCTATCCCCAGTTTCAGAATCGCAAGGGTCACAGTCATGAAAGAAGA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28037938 222 -  80997621 gctggccaaggagaaatattcataggatccctctgtattatcatagagcaggcaatgaag-ggtgtacttgtaggtgagcagcaataatttagtaactagaacaCAAATCTTCATAGTTCACA----TTTTTTTTTGTCACTGATGTATACTTTGGAGCTGTAGAGAGATTATTAGTGGTTCTATCCCCAGTTTCAGAATCGCAAGGGTCACAGTCATGAAAGAAGA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2094535 223 +  10377808 gctggccaaggagaaatattcataggatccctctgtattatcatagagcaggcaatgaag-ggtgtacttgtaggtgagcagcaataatttagtaactagaacaCAAATCTTCATAGTTCACA---TTTTTTTTTTGTCACTGATGTATACTTTGGAGCTGTAGAGAGATTATTAGTGGTTCTATCCCCAGTTTCAGAATCGCAAGGGTCACAGTCATGAAAGAAGA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1979942 220 -   8458610 gctagccaaggagaaatattcataggatccctctgtattatcatagagcaggcaatgaag-ggtgtacttgtaggtgagcagcaataatttagtaactaaaacaCAAATCTTCATAGTTCACA------TTTTTTTGTCACTGATGTATACTTTGGAGCTGTAGAGAGATTATTAGTGGTTCTATCCCCAGTTTCAGAATCACAAGGGTCACAGTCATGAAAGAAGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64924250 226 +  75148670 gctggccaaggagaaatattcataggatccctctgtattatcatagagcaggcaatgaag-ggtgtacttgtaggtgagcagcaataatttagtaactagaacaCAAATCTTCATAGTTCACATTTTTTTTTTTTTGTCACTGATGTATACTTTGGAGCTGTAGAGAGATTATTAGTGGTTCTATCCCCAGTTTCAGAATCGCAAGGGTCACAGTCATGAAAGAAGA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2164215 222 +   4244037 gctggccaaggagaaatattcataggatccctctgtattatcatagagcaggcaatgaag-ggtgtacttgtaggtgagcagcaataatttagtaactagaacaCAAATCTTCATAGTTCACA----TTTTTTTTTGTCACTGATGTATACTTTGGAGCTGTAGAGAGATTATTAGTGGTTCTATCCCCAGTTTCAGAATCGCAAGGGTCACAGTCATGAAAGAAGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2187257 225 +   4569836 gctagccaaggagaaatatttgtaggatccctctgtattattatagagcaggcaatgaag-ggtgtatttgtaggtaagcagcaataatttagtaactagaacaCAAATCTTCATAGTTGACA-TTTTTTTTTTTTGTCACTGATGTATACTTTGGAGCTGTAGAGAGATTATTAGTGGTTCTATCCCCAGTTTCAGAATCACTAGGGTCACAGTCATGAAAGAAGA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46142491 220 - 159171411 gctggccaaggataaatattcataggatctctctgttttatcatagagcaggcaatgaag-ggtatacttgcaggtgagcagcaaaaaattagtaactagaacaCAGATCTTTCTAGCTCACA------TTTTTCTGTCACTGATGTATACTTTGGAGCTGCAGAGAGATTGTTAATGGTTGTATCCTCAGTTTTAGAATCACAAGGGTCATAGTAATGAAAGAAGG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1851826 214 +   3513951 actggccaaggataaacattcatagga--tccctgttttatcatagagcaggcaatgaag-----cccttgcaggtgagcagcaaaaatttagtaactagaacaCAGATCTTTATAGCTCACA------TTTTTCTGTCACTGATGTATACTTTGGAGCTGTAGAGAGATTATTAATGGTTGTGTCCTCAGTTGTAGAATCACAAGGATCATAGTCATGAAAGAAGT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1902979 216 +   1920343 gctggccaaggataaacattcataggatccctctgttttatcatagagcaggcaatgaag-ggtatactt----gtgagcagcaaaaatgtagtagctagAAAACAGATCTTTATAGCTCACA------TTTTTCTGTCACTGATGTATACTTTGGAGCTGTAGAGAGATTATTAATGGTTGTATCCTCAGTTTTAGAATCACAAGGGTCATAGTCATGAAAGAAGG
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7016891 220 -   7032639 gctggccaaggataaacattcataggatccctctgttttatcatagagcaggcaatgaag-ggcgtacttgcaggtgagcagcaaaaatttagtaactagaacaCAGACCTTTATAGCTCACA------TTTTTCTATCACTGATGTATACTTTGGAGCTGTAGAGAGATTATTAATGGTTGTATCCCCAGTTTTAGAATCACAAGGGTCATAGTCATGAAAGAAGA
i aotNan1.NW_018502359v1    I 1646 C 0
s dasNov3.JH570468            460588 151 -    852752 gctggaaaagggaaaatatatatagggtccttctctattatcctagagcaggcaatgaaggggggtatttggaaaagagagacaataaattg---------------atCTGCTTA-------------TTTTTCTGTCAGTGATGTGTACTTTGTAGCTTTAG------------------------------------------------GACCATGACAGAAGG
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e canFam3.chr9              21456066 1456 +  61074082 I
e otoGar3.GL873537          22842526 1560 +  28711273 I

a score=846077.000000
s hg38.chr17_JH159148v1_alt     6357 114 +     88070 TTCTGGGTC-AAAAAAGAGGGGGATGGCCATAAG-----AACAAAATCTAGCACCTGAACATGGAAGGGTCCAGGTGGAGAATTTCTACCTGCAGTTGAATTGACTAATGTCAGCACTGA
s gorGor5.CYUI01015385v1     4068993 114 +   4267968 TTCTGGGTC-AAAAAAGAGGGGGATGGCCATAAG-----AACAAAATCTAGCACCTGAACATGGAAGGGTCTAGGTGGAAAATTTCTACCTGCAGTTGAATTGACTAATGTCAGCACTGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2048845 115 -   2193130 TTCTGGGTCAAAAAAAGAGGGGGATGGCCATAAG-----AACAAAATCTAGCACCCGAACATGGAAGGATGTAGGTGGAGAATTTCTACCTGCAGTTGAATTGACTAATGTCAGCATTGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30125306 114 -  77216781 TTCTGGGTC-AAAAAAGAGGGAGATGGCCATAAG-----AACAAAATCTAGCATCTGAACATGGAAATGTCTAGCTGGAGAATTTCTACCCATAGTTGAATTGACTAATGTCAGCATTGG
i rheMac8.chr16             C 0 I 6
s macFas5.chr16             28038160 114 -  80997621 TTCTGGGTC-AAAAAAGAGGGAGATGGCCATAAG-----AACAAAATCTAGCATCTGAACATGGAAATGTCTAGCTGGAGAATTTCTACCCATAGTTGAATTGACTAATGTCAGCATTGG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2094758 114 +  10377808 TTCTGGGTC-AAAAAAGAGGGGGATGGCCATAAG-----AACAAAATCTAGCATCTGAACATGGAAATGTCTAGCTGGAGAATTTCTACCCATAGTTGAATTGACTAATGTCAGCATTGG
i macNem1.NW_012014910v1    C 0 I 6
s cerAty1.NW_012006043v1     1980162 105 -   8458610 TTCTGGGTC-AAAAAAAGGGGGGATGGCCATAAG-----AACAAAATCTAGCATCT---------AGTGTCTAGGTGGAAAATTTCTACCCATAGTTGAATTGACTAATGTCAGCATTGG
i cerAty1.NW_012006043v1    C 0 I 6
s chlSab2.chr16             64924476 114 +  75148670 TTCTGGGTC-AAAAAAGAGGGGGATGGCCACAAG-----AACAAAATCTAGCATCTGAACATGGAAATGTCTAGCTGGAGAATTTCTACCCATAGTTGAATTGACTAATGTCAGCATTGG
i chlSab2.chr16             C 0 I 6
s manLeu1.NW_012106252v1     2164437 105 +   4244037 TTCCGGGTC-AAAAAAAGGGGGGATGGCCATAAA-----AACAAAATCTAGCATCT---------AGTGTCTAGGTGGAAAATTTCTACCCATAGTTGAATTGACTAATGTCAGCATTGG
i manLeu1.NW_012106252v1    C 0 I 6
s colAng1.NW_012122154v1     2187482 114 +   4569836 TTCTGGGTC-AAAAAAGAGGGGGATGGCCATAAG-----AACAAAATCTAGCATCTGAACATGAAAGTGTCTAGGTGGAGAATTTCTACCCATAGTTGAATTTACTAATGTCAGCATTGG
i colAng1.NW_012122154v1    C 0 I 6
s calJac3.chr5              46142711 114 - 159171411 TTCTGAGGC-AAAAAAGAGTGGGATGGCCATAAG-----AACAAAATCTAGCACCTGAACATGGCAAGGTCTACGTGGAGAATTTCTATCAGGAGTTGAATTGACTAATGTCAGTATTGG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1852040 114 +   3513951 TTCTGGGGT-AAAAAAGAGTGGGATGGCCATAAG-----AACAAAATCTAACACCTGAACATGGAAAGGTCTAGGCGGAGAATTTCTGTCAGTAGTCGAATTGACTAATGTCAACATTGA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1903195 119 +   1920343 TTTGGGGGC-AAAAAAGAGTGGAATGGCCATAAGAACAAAACAAAATCTAACACCTGAACACGGAAAGGTCTAGATGGAGAATTTCTATCAGCAGTTGAATTGACTAATGCCAGCATTGG
i cebCap1.NW_016107730v1    C 0 I 6
s aotNan1.NW_018502359v1     7017111 114 -   7032639 TTCTGGGGC-AAAAAAGAGTGGGATGGCCATAAG-----AATAAAATCTAGCACCTGAACATGGAAAGGTCTAGGTGGAGAATTTCTATCAGTAGTTGAATTGACTAATGTCAGCATTGG
i aotNan1.NW_018502359v1    C 0 I 6
s dasNov3.JH570468            460739 113 -    852752 -GCTTAGTT-AAGAGAGAATAGGGTGGCAGTGAA-----AGAAAAATTTAGGGCCCGAACAAGGAAGTGGCTAGATGGAGGATTGCTACCAGTAGTTGAATTAATTCATGTTGGAATTAT
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e canFam3.chr9              21456066 1456 +  61074082 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e panPan2.chr17             16233418   0 +  83442489 C
e panTro5.chr17             16328533   0 +  83181570 C

a score=389.000000
s hg38.chr17_JH159148v1_alt     6471 34 +     88070 ATCTCTTCTTGAATTGAATTCAAGAAGCATTGAA
s gorGor5.CYUI01015385v1     4069107 34 +   4267968 ATCTCTTCTTGAATTGAATTCAAGAAGCATTGAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2048960 34 -   2193130 ATCTCTTCTTGAATTGAATTCAAGAAGCACTGAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28038274  6 -  80997621 ---------------TAATTC-------------
i macFas5.chr16             C 0 C 0
s calJac3.chr5              46142825  6 - 159171411 ---------------TAATTC-------------
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1852154  6 +   3513951 ---------------TAATTC-------------
i saiBol1.JH378271          C 0 C 0
s dasNov3.JH570468            460852  7 -    852752 --------------ATAATTC-------------
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e aotNan1.NW_018502359v1     7017225  6 -   7032639 I
e cebCap1.NW_016107730v1     1903314  6 +   1920343 I
e canFam3.chr9              21456066 1456 +  61074082 I
e manLeu1.NW_012106252v1     2164542  6 +   4244037 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e colAng1.NW_012122154v1     2187596  6 +   4569836 I
e chlSab2.chr16             64924590  6 +  75148670 I
e cerAty1.NW_012006043v1     1980267  6 -   8458610 I
e macNem1.NW_012014910v1     2094872  6 +  10377808 I
e rheMac8.chr16             30125420  6 -  77216781 I
e panPan2.chr17             16233418  0 +  83442489 C
e panTro5.chr17             16328533  0 +  83181570 C

a score=954192.000000
s hg38.chr17_JH159148v1_alt     6505 117 +     88070 TGCTTCTTGAATCCCTAGATATAGGTGGGCTTATCATTTCAACAGTTCAAGTAGCTAGATCTGTTCTAGTCTTCTAATGGGTATTTTCCTTTTATTTCTAACTATGTATGGGTATTG
s gorGor5.CYUI01015385v1     4069141 117 +   4267968 TGCTTCTTGAATCCTTAGATGTAGGTGGGCTTATCATTTCAATAGTTCAAGTAGCTAGATCTGTTCTAGTCTTCTAATGGGTATTTTCCTTTTATTTCTAACTATGTATGGGTATTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2048994 117 -   2193130 TGCTTCTTGAATACCTAGATATAGCTGGGCTTATCATTTCAACAGTTCAAGTAGCTAGATCTGTTCTAGTCTTCTGATGGGTATTTTCCTTTTATTTCTAACTATGTATGGGTATTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30125426 117 -  77216781 TGCTTCTTGAATCCCTAGATACAGGTGGGCTTATCATTTCAACAGTTCAAGTAGCTAGATCTGTTCTAGTCTTCTGATAGGTATTTTCCTCTTATTTCTAACTATGTATGGCTATTG
i rheMac8.chr16             I 6 C 0
s macFas5.chr16             28038280 117 -  80997621 TGCTTCTTGAATCCCTAGATACAGGTGGGCTTATCATTTCAACAGTTCAAGTAGCTAGATCTGTTCTAGTCTTCTGATAGGTATTTTCCTCTTATTTCTAACTATGTATGGCTATTG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2094878 117 +  10377808 TGCTTCTTGAATCCCTAGATACAGGTGGGCTTATCATTTCAACAGTTCAAGTAGCTAGATCTGTTCTAGTCTTCTGATAGGTATTTTCCTCTTATTTCTAACTATGTATGGCTATTG
i macNem1.NW_012014910v1    I 6 C 0
s cerAty1.NW_012006043v1     1980273 116 -   8458610 TGCTTCTTGAATCCCTAGATACAGGTGGGCTTATCATTTCAACAGTTCAAGTAGCTAGATCTGTTCTAGTCTTCTGATGGGTATTTTCCT-TTATTTCTAACTATGTATGGCTATTG
i cerAty1.NW_012006043v1    I 6 C 0
s chlSab2.chr16             64924596 117 +  75148670 TGCTTCTTGAATCCCTAGATACAGGTGGGTTTATCATTTCAACAGTTCAAGTAGCTAGATCTGTTCTAGTCTTCTGATGGGTATTTTCCTCTTATTTCTAACTATGTATGGCTATTG
i chlSab2.chr16             I 6 C 0
s manLeu1.NW_012106252v1     2164548 116 +   4244037 TGTTTCTTGAATCCCTAGATACAGGTGGGCTTATCATTTCAACAGTTCAAGTAGCTAGATCTGTTCTAGTCTTCTGATGGGTATTTTCCT-TTATTTCTAACTATGTATGGCTATTG
i manLeu1.NW_012106252v1    I 6 C 0
s colAng1.NW_012122154v1     2187602 116 +   4569836 TGCTTCTTGAATCCCTAGATACAGGTGGGCTTATCATTTCAACAGTTCAAGTAGCTAGATCTGTTCTAGTTTTCTGATGGGTATTTTCCT-TTATTTCTAACTATGTATGGCTATTG
i colAng1.NW_012122154v1    I 6 C 0
s calJac3.chr5              46142831 117 - 159171411 TGCTTCTTGAATCCCTAGGTATATGTGGGCTTATCATTTCAACAGTTCAATTAGCTAGATCTGTTCTGGTCTTCTGATGGGTACTTTTCTCTTATTTTTAACTATGTATGGGTATTG
i calJac3.chr5              C 0 I 299
s saiBol1.JH378271           1852160 117 +   3513951 TGCTTCTTGAATCCCTAGGTATAGGTGGACTTATAATTTCAACAGTTCAATTGGTTAGATCCGTTCTGGTCTCCTGATGGGTATTTTTCTCTCATTTTTAACTATGTATGGGTATTG
i saiBol1.JH378271          C 0 I 302
s cebCap1.NW_016107730v1     1903320 117 +   1920343 TGCTTCTTGAATCCCTAGGTATAGGTGGACTTATCATTTCAACGGTTCAATTAGTTAGATCTGTTCTGGTCTTCTGATGGGTATTTTTCTCTTATTTTTAAGTATGTATGGGTATTG
i cebCap1.NW_016107730v1    I 6 I 309
s aotNan1.NW_018502359v1     7017231 117 -   7032639 TGCTTCTCAAATCCCTAGGTATAGGTGGACTTGTCATTTCAACAGTTCAATTAGTTAGATCTGTTCTGGTCTTCTGATGGGTACTTTTCTCTTATTTTTAACTATGTATGGGTATTG
i aotNan1.NW_018502359v1    I 6 C 0
s dasNov3.JH570468            460859 116 -    852752 TGCCTCCCTGTTGCCAGGATGTAGGTGGGATTATCGTTTAGCCAATCCAA-TACCTAGTTCTGATCTGGTCTTCTGATGGATAGTTTCCTCTTAATTCCAACTGTGTATGGGCATCA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e canFam3.chr9              21456066 1456 +  61074082 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e panPan2.chr17             16233418   0 +  83442489 C
e panTro5.chr17             16328533   0 +  83181570 C

a score=142457.000000
s hg38.chr17_JH159148v1_alt     6622 15 +     88070 CCTTCAGTACCTTTT
s gorGor5.CYUI01015385v1     4069258 15 +   4267968 CCTTCAGTACCTTTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2049111 15 -   2193130 CCTTCAGTACCTTTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30125543 15 -  77216781 CCTTCAGTACCTTTT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28038397 15 -  80997621 CCTTCAGTACCTTTT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2094995 15 +  10377808 CCTTCAGTACCTTTT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1980389 15 -   8458610 CCTTCAGTACCTTTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64924713 15 +  75148670 CCTTCAGTACCTTTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2164664 15 +   4244037 CCTTCAGTACCTTTT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2187718 15 +   4569836 CCTTCAGTACCTTTT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46143247 15 - 159171411 CCTTCAGTACCTTTT
i calJac3.chr5              I 299 C 0
s saiBol1.JH378271           1852579 15 +   3513951 CCTTCAGTACCTTTT
i saiBol1.JH378271          I 302 C 0
s cebCap1.NW_016107730v1     1903746 15 +   1920343 CCTTCAGTACCTTTT
i cebCap1.NW_016107730v1    I 309 C 0
s aotNan1.NW_018502359v1     7017348 15 -   7032639 CCTTCAGTACCTTtt
i aotNan1.NW_018502359v1    C 0 I 377
s dasNov3.JH570468            460975 15 -    852752 CCTTCAGTAATTTCT
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e canFam3.chr9              21456066 1456 +  61074082 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e panPan2.chr17             16233418  0 +  83442489 C
e panTro5.chr17             16328533  0 +  83181570 C

a score=284632.000000
s hg38.chr17_JH159148v1_alt     6637  83 +     88070 CTacccacacacatgcacacacatatagatgcat--------------------------------------------------acaggtacac-acacacacactcagatacagatgcacacac----atacatgca
s gorGor5.CYUI01015385v1     4069273 133 +   4267968 CTacccacacacatgcacacacatatagatgcatacaggtacacacacacacactcagacacacatgcacacacatacatgtacacaggtacac-acacacacactcagacacacatgcacacac----atacatgca
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2049126  89 -   2193130 TTacccacacacatgcacacacacatagatgcat------------------------------------------------acacatacactc-acacacacactcagacacacatgcacacacacatacatatgca
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30125558  73 -  77216781 CTACCCacacacatgcacacatacatacatgcat------------------------------------------------acacatgcactc-acacacacactcagacacacatgc----------------aca
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28038412  73 -  80997621 CTACCCacaaacatgcacacatacatacatgcat------------------------------------------------acacatgcactc-acacacacactcagacacacatgc----------------aca
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2095010  89 +  10377808 CTACCCacacacatgcacacatacatacatgcat------------------------------------------------acaCATGCACTc-acacacacactcagacacacatgcgcacacacacacacataca
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1980404  70 -   8458610 CTATCcacacacatgcacacatacatacatgcat------------------------------------------------acacatgcactc-acacacacactcagacacacatgt-------------------
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64924728  70 +  75148670 CTacccacacacatgcacacatacatacatgcat------------------------------------------------acacatgcactc-acacacacactcagacacacatgc-------------------
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2164679  69 +   4244037 CTATCcacacacatgcacacatacatacatgcat------------------------------------------------acacatgcactc-acacacacactcagacacacatg--------------------
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2187733  66 +   4569836 GTacccacacacacacacacatacatacatgcat------------------------------------------------acacataaact-----cacacactcagacacacatgc-------------------
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46143262  74 - 159171411 CTACCcacacacatgcacaaacacatatatgcat------------------------------------------------acacatacagtt----cacacacacagacacacatgtacacaa--a----------
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1852594  80 +   3513951 CTACTcacacacatgcacaaacacatacgtgcat------------------------------------------------acacatacacttcacacacacacacagacacacatgcacacaaaca----------
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1903761  73 +   1920343 CTactcacacacatgcacaaacacatacatgcat------------------------------------------------acacatacactt----cacatacacagacacacatgcacacaa-------------
i cebCap1.NW_016107730v1    C 0 C 0
s dasNov3.JH570468            460990  13 -    852752 TTCCCCCCTCTCC-----------------------------------------------------------------------------------------------------------------------------
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e aotNan1.NW_018502359v1     7017363 377 -   7032639 I
e canFam3.chr9              21456066 1456 +  61074082 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e panPan2.chr17             16233418   0 +  83442489 C
e panTro5.chr17             16328533   0 +  83181570 C

a score=3315393.000000
s hg38.chr17_JH159148v1_alt     6720 456 +     88070 cacacacactcacacacagacacacaccacaTTTCAACTTAGTTGTAT-GGCTGCACTTAAGGTTGATTTATTTGCTCCATGATTTA--------------CAATTGCCTATAAAACATGCCTAGCCAAACCTGAGTAAAGTGC-ACTAAAAGACTGATTTTAGCATTTTAGCCTTCCCCATCTAACTGGCCCAGCTGATATCACCCTCTTGTTCCCCCCTGCCCTTTGGATGACTCCTGTCCCAGTTTAAATGGTTGGACTTCTGTCCTTAT--------------GTCTTTATGACCAGTGCCCTGACTTTCTCCCAGATCGGG--------CCTTCTCCCCAACCCGAGGAGGGACCTTAGGATCTGCTCATAAACTTACCTGATGGTCACTGGCTGAGCATCTCTCGTTCCAGTCCTCT----------CAATCACTGTGATTTGAGGTTCTCAGTAGTTAAATAGGTCTTGCCAATATGTGTGGGACATTCTAAAAAAA
s gorGor5.CYUI01015385v1     4069406 456 +   4267968 cacacacactcacacacagacacacaccacaTTTCAACTTAGTTGTAT-GGCTGCACTTAAGGTTGATTTATTTGCTCCATAATTTA--------------CAATTGCCTATAAAACATGCCTAGCCAAACCTGAGTAAAGAGC-ACTAAAAGACTGATTTTAGCATTTTAGCCTTCCCCATCTAACTGGCCCAGCTGATATCACCCTCTTGTTCCCCCCTGCCCTTTGGATGACTCCTGTCCCAGTTTAAATGGTTGGGCTTCTGTCCTTAT--------------GTGTTTATGACCAGTGCCCTGACTTTCTCCCAGATCGGG--------CCTTCTCCCCAACCCGAGGAGGGACCTTAGGATCTGCTCATAAACTTACCTGATGGTCACTGGCTGAGCATCTCTCGTTCCAGTCCTCT----------CAATCACTGTGATTTGAGGTTCTCAGTAGTTAAATAGGTCTTGCCAATATGTGTGGGACATTCTAAAAAAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2049215 445 -   2193130 cacacacactcacacacagacacacaccacaTTTCAACTTAGTTGTAT-GGCTGCACTTAAGGTTGATTTATTTGCTCCATAATTTA--------------CAATTGCCTATAAAACATGCTTAGGCAAACCTGAGTAAAGAGC-ACTAAAAGACTGATTTTAGCATTTTAGGCTTCCCCATCTAACTGGTCCAGCTGATATCACCCTCTTCTTCCCCCTTGCCCTTTGGATGACTCCTGTCCCAATTTAAATGGTTGGGCTTC------TAT--------------GTCTTTATGACCAGGGCCCTGACTTTCTCCCAGATCAGG--------CCTTCTCCCTTAT-----AAGGGACCTTAGGATCTGCTCATAAACTTACCTGATGCTCACTGGCTGAGCATCTCTTGTTCCAGTCCTCC----------CAATCACTGTGATTTGAGGTTCTCAGTAGTTAAATAGGTCTTGCCAATATGTGTGGGACATTCTTAAAAAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30125631 454 -  77216781 cacacacacacatacacacacacacaccacaTTTCAATTTAGTTATAT-GGCTGCACTTAA-GTTGATTTGTTTGCTCCATAATTTA--------------CAATGGCCTATAAAACATGCCTAGCCAAACCTGAGTAAAGAGC-ACTAAAAGACTGATTTTAGCATTTTAGCCTTCGCCATCTAACTGGCCCAGCTGATATCACCCCCTTCTG-CCCCCTGTCTTTTGGATGACTCCTGTCCCAGTTTAAATGATTGGGCTTCTGTCCTTAT--------------GTCTTTATGACCAGTGCCCTGACTTTCTCCTAGATCGGG--------CCTTCTCCCCAGCCTGAGGAGGGACCTTAGGATTTGCTCATAAACTTACCTGATGCTCACTGGCTGAGCATCTGTTGTTTCAATCCTCT----------CAATCACCGTGGTTTGTGGTTCTCAGTAGTTAAATAGGTCTTGCCAGTATGTGTGGGACATTCTAAAAAAA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28038485 454 -  80997621 cacacacacacatacacacacacacaccacaTTTCAATTTAGTTATAT-GGCTGCACTTAA-GTTGATTTGTTTGCTCCATAATTTA--------------CAATGGCCTATAAAACATGCCTAGCCAAACCTGAGTAAAGAGC-ACTAAAAGACTGATTTTAGCATTTTAGCCTTCGCCATCTAACTGGCCCAGCTGATATCACCCCCCTCTG-CCCCCTGTCTTTTGGATGACTCCTGTCCCAGTTTAAATGATTGGGCTTCTGTCCTTAT--------------GTCTTTATGACCAGTGCCCTGACTTTCTCCTAGATCGGG--------CCTTCTCCCCAGCCTGAGGAGGGACCTTAGGATTTGCTCATAAACTTACCTGATGCTCACTGGCTGAGCATCTGTTGTTTCAATCCTCT----------CAATCACCGTGGTTTGTGGTTCTCAGTAGTTAAATAGGTCTTGCCAGTATGTGTGGGACATTCTAAAAAAA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2095099 454 +  10377808 cacacacacacatacacacacacacaccacaTTTCAATTTAGTTATAT-GGCTGCACTTAA-GTTGATTTGTTTGCTCCATAATTTA--------------CAATGGCCTATAAACCATGCCTAGCCAAACCTGAGTAAAGAGC-ACTAAAAGACTGATTTTAGCATTTTAGCCTTCCCCATCTAACTGGCCCAGCTGATATCACCCCCTTCTG-CCCCCTGTCTTTTGGATGACTCCTGTCCCAGTTTAAATGATTGGGCTTCTGTCCTTAT--------------GTCTTTATGACCAGTGCCCTGACTTTCTCCTAGATCGGG--------CCTTCTCCCCAGCCTGAGGAGGGACCTTAGGATTTGCTCATAAACTTACCTGATGCTCACTGGCTGAGCATCTGTTGTTTCAATCCTCT----------CAATCACCGTGGTTTGTGGTTCTCAGTAGTTAAATAGGTCTTGCCAGTATGTGTGGGACATTCTAAAAAAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1980474 444 -   8458610 -----------gcacacacacacacaccacaTTTCAATTTAGTTATAT-GGCTGCACTTAA-GTTGATTTGTTTGCTCCATAATTTA--------------CAATTGCCTACAAAACATGCCTAGCCAAACCTGAGCAAAGAGC-ACTAAAAGATTGATTTTAGCATTTCAGCCTTCCCCATCTAACTGGCCCAGCTGATGTCATCCCCTTCTGTCCCCCTGCCTTTTGGATGACTCCTGTCCCAGTTTAAATGATTGGGCTTCTGTCCTTAT--------------GTCTTTATGACCAGTGCCCTGACTTTCTCCTAGATCAGG--------CCTTCTCCCCAGCCTGAGGAGGGACCTTAGGATCTGCTCATAAACTTACCTGATGCTCACTGGCTGAGCATCTCTTGTTTCAACCCTCT----------CAATCACTGTGGTTTGTGGTTCTCAGTAGTTAAATAGGTCTTGCCAGTATGTGTGGGACATTCTAAAAAAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64924798 452 +  75148670 ---gtgcacgcgcacacacacacacaccacaTTTCAATTTAGTTATAT-GGCTGCACTTAA-GTTGATTTGTTTGCTCCATAATTTA--------------CAATGGCCTATAAAACATGCCTAGCCAAACCTGAGTAAAGAGC-ACTAAAAGACTGATTTTAGCATTTTAGCCTTCCCCATCTAACTGGCCCAGCTGATATCACCCCCTTCTGCCCCCCTGTCTTTTGGATGACTCCTGTCCCAGTGTAAATGATTGGGCTTCTGTCCTTAT--------------GTCTTTATGACCAGTGCCCTGACTTTCTCCTAGATTGGG--------CCTTCTCCCCAGCCTGAGGAGGGACCTTAGGATTTGCTCATAAACTTACCTGATGCTCACTGGCTGAGCATCTGTTGTTTCAATCCTCT----------CAATCACTGTGGTTTGTGGTTCTCATTAGTTAAATAGGTCTTGCCAGTATGTGTGGGACATTCTAAAAAAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2164748 446 +   4244037 --------cacatacacacacacacaccacaTTTCAATTTAGTTATAT-GGCTGCACTTAA-GTTGATTTGTTTGCTCCATAATTTA--------------CAATTGCCTATAAAACATGCCTAGCCAAACCTGAGTAAAGAGC-ACTAAAAGACTGATTTTAGCATTTTAGCCTTCCCCATCTAACTGGCCCAGCTGATATCACCCCCTTCTGTCCCCCTGCCTTTTGGATGACTCCTGTCCCAGTTTAAATGATTGGGCTTCTGTCCTTAT--------------GTCTTTATGACCAGTGCCCTGACTTT-TCCTAGATCAGG--------CCTTCTTCCCAGCCTGAGGAGGGACCTTAGGATCTGCTCATAAACTTACCTGATGCTCACTGGCTGAGCATCTCTTGTTTCAACCCTCT----------CAATCACTGTGGTTTGTGGTTCTCAGTAGTTAAATAGGTCTTGCCAGTATGTGTGGGACATTCTAAAAAAT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2187799 444 +   4569836 -----------acacatgcacacacacCATATTTCAATTTAGTTATAT-GGCTGCACTTAA-GTTGATTTGTTTGCTCCATAATTTA--------------TAATTGCCTATAAAACATGCCTAGCCAAATCTGAGTAAAGAGC-ACTAAAAGACTGATTTTAGCATTTTAGCCTTCCCCATCTAACTGGCCCAGCTGATATCACCCCCTTTTGCCCCCCTGCCTTTTGGATGACTCCTGTCCCAGTTTAAATGATTGGGCTTCTGTCCTTAT--------------GTCTTTATGACCAGTGACCTGACTTCCTCCTAGATTGGG--------ACTTCTCCCCAGCCTGAGGAGGGACTTTAGGATCTGCCCACAAGCTTACCTGATGCTCACTGGCTGAGCATCTCTTGTTTCAATCCTCT----------CAATCACTGTGGTTTGTGGTTCTCAGTAGTTAAATAGGTCTGGCCAGTATGTGTGGGACATTCTAAAAAAA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46143336 442 - 159171411 cacacacactcgcacacagacacacacCACATTTCAACTTAATTGTAT-GGCTGTACTTAAGATTGATTTGTTTGCTCCATAATTTA--------------CAGTTGTGTATAAAACATGC----------CTGACTAAAGAGC-ACTAAAACCCTGATTTTAGCATTTTGGCCTTCAGCACTGAATTGGCCCAGCCGATATTACCC---TCTTCCCCCCTGCCCTTTGGATGACTCCTGTCCCACTTTAAATGATTAGGCTTCCGTCACTGT--------------GTCTTTAGGATCAGTGCTCTGACTTTCTCTCAGACTGGG--------CCTTCTCCCCAACCCAAGAAGAGACCTTAGGATCTGCTCATAAATTTATTCAATGCTCGCCGGCTGAGTATGCCTTGTTCCAGTCTTCT----------CAATCAATGTGGTCTGTGGTTCTCAGTAGTTTAATAGGTCTTGCCAATATATGTGGAACAGTCT-AAAAAA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1852674 445 +   3513951 cacacacacacacacacaaacacacatcacaTTTCAACTTAGTTGTAT-GGCGGTACTTACGGTTGATTTGTTTGCTCCATAATTTA--------------CAATTGCCTGTAAAACATGC----------CTGAGTAAAGAAC-ACTAAAAGACTGATTTTAGCATTTTGGTCTTCAGCACAGAATTGGCACAGCTGATATCACCCTCTTCTTCCCCACTGCCCTTTGGATGACACCTGTCCCACTTTAAATGATTAGGCTTCCGTCACTGT--------------GTCTTTAGGATCAGTGCTCTGACTTTCTCTCAGACTGGG--------CCTTCTTTCCAACCCAAGGAGTGACCTTAGGATCTGCTCATAAACTCACTCAAT-CTCGCTGGCTGAGTATGCCTTGTTCCAGTCTTCT----------CAATCAATGTGGTCTGTGGTTCTCAGTAGTTAAACAGGTCTTGTCAATATGTGTGGAACATTCTAAAAAAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1903834 439 +   1920343 -------acacacacacagacacacacCATATTTCAACTTAGTTGTGT-GGCGGTACTTAAGATTGATTTGTTTGCCCCATAATTTA--------------CAATTGCCTATAAAACATGC----------CTGGGTAAAGAAC-ACTAAAAGACTGATTTTAGCATTTTGGTCTTCAGCACCGACTTGGCACAGCTGATATCACCCTCTTCTTCCCCCCTGCCCTTTGAATGACTCCTGTCCCACTTTAAATGATTAGGCTTCCATCACTGT--------------GTCTTTAGGATCAGTGCTCTGACTTTCTCTCAGACTGGG--------CCTTCTCCCCAACCCAAGGAGGGACCTTAGGATCTGCTCATGAACTTACTCAATGCTCGCTGGCTGAGTATGCCTTGTTCCAGTCTTCT----------CAATCAATGTGGTCTGTGGTTCTCAGTAGTTAAACAGGTCTTGCCAATATGTGTGGAACATTCTAAAAAAA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7017740 446 -   7032639 cacacacactcacacacagacacacatcacaTTTCAACTTAGTTGTAT-GGCTGTACTTAAGGTTGATTTGTTTGCTCCATAATTTA--------------CAATTGCCTATAAAACATGC----------CTGAGTAAAGAGC-TCTAAAAGACTAATTTTAGCATTTTGGTCTTTAGCACTGAATTGGCCCAGCTGATATTACCCTCTTCTTCCCCTCTGCCCTTTGGATGACTCCTGTCCCACCTTAAATGATTAGGCTTCCATCACTGT--------------GTCTTTAGGATCAGTGCTCTGACTTTCTCTCAGACTGGG--------CCTTCTCCCCAACTCAAGGAGGGACCTTAGGATCTGCTCATAAACTTACTCAATGCTCGCTGGCTGAGTATGCCTTGTTCCAGTCTTCT----------CAATCAATGTGGTCTGTGGTTCTCAGTAGTTAAACAGGTCTTGCCAATATGTGTGGAACATTCTAAAAAAA
i aotNan1.NW_018502359v1    I 377 I 10
s dasNov3.JH570468            461003 443 -    852752 ----------------------CATACCACATTTAGATTTAGTTGGACAGACTGTACTCAG-GTTGATTTCTTTGTTCCATAATTTACTTTTTTTGGGAGGCAGATGCCCACAAGATGTTCCTACCAAAATATGAGTTAAGAGCAACTGAAAGTTTGATTTTTGCACTTTGGGCCTCAGAATCTAGTCAGCCCAACAATTATATCCCCTTT------------------GATGCTTCCTGCCCTAGTTTGGGTGATTGCGCCTCTGCCTTTGTCCCCTGCACCCAAAGTTCTT-----CAGATCTCTGAGTTGCTCCCAGATTAGAGTATTAGCCCTTCTCCCCAG-----GAAGTGACCCTATGATCTGCTCATAAACTTACCTGATGCTCACCTGCTGAACATCACCTGTTCCAGCCCCCTCCCTGCCCACCAGGCATTGTGATCTGT-----CCA-----CAAGTATGTCTTGCTGGAGTGTGTAGGGCATTCTAAGAAAA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e canFam3.chr9              21456066 1456 +  61074082 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e panPan2.chr17             16233418   0 +  83442489 C
e panTro5.chr17             16328533   0 +  83181570 C

a score=80504.000000
s hg38.chr17_JH159148v1_alt     7176 17 +     88070 ACCTTACAGATGAAGGA
s gorGor5.CYUI01015385v1     4069862 17 +   4267968 ACCTTATAGATGAAGGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2049660 17 -   2193130 ACCTTATAGATGAAGGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30126085 17 -  77216781 CCCTTATAGATGAAGGA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28038939 17 -  80997621 CCCTTATAGATGAAGGA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2095553 17 +  10377808 CCCTTATAGATGAAGGA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1980918 17 -   8458610 TCCTTATAGATGAAGGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64925250 17 +  75148670 TCCTTATAGATGAAGGA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2165194 17 +   4244037 TCCTTATAGATGAAGGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2188243 17 +   4569836 TCCTTATAGATGAAGGA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46143778 12 - 159171411 ACTTTGTCGATG-----
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1853119 12 +   3513951 ACTTTATAGATG-----
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1904273 12 +   1920343 ACTTTATCGATG-----
i cebCap1.NW_016107730v1    C 0 C 0
s dasNov3.JH570468            461446 17 -    852752 GCATTGTGGATGAAGGA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e aotNan1.NW_018502359v1     7018186 10 -   7032639 I
e canFam3.chr9              21456066 1456 +  61074082 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e panPan2.chr17             16233418  0 +  83442489 C
e panTro5.chr17             16328533  0 +  83181570 C

a score=303727.000000
s hg38.chr17_JH159148v1_alt     7193 35 +     88070 AAACTAACCAAAAGAGCCCGGGAATAATGAGACAT
s gorGor5.CYUI01015385v1     4069879 35 +   4267968 AAACTAACCAAAAGAGCCCGGGAATAATGAGACTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2049677 35 -   2193130 AAACTAACCAAAAGAGCCCTGGAATAATGAGACAT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30126102 35 -  77216781 AAACTAACCAAAAGAGCCCTGGAATAATGAGACAT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28038956 35 -  80997621 AAACTAACCAAAAGAGCCCTGGAATAATGAGACAT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2095570 35 +  10377808 AAACTAACCAAAAGAGCCCTGGAATAATGAGACAT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1980935 35 -   8458610 AAACTAACCAAAAGAGCCCTGGAATAATGAGACAT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64925267 35 +  75148670 AAACTAACCAAAAGAGCCCTGGAATAATGGGACAT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2165211 35 +   4244037 AAACTAACCAAAAGAGCCCTGGAATAATGAGACAT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2188260 35 +   4569836 AAACTAACCAAAAGAGCCCTGGAATAATGAGACAT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46143790 35 - 159171411 AAATTAACCAAAAGAGCCCCAGAATAATGAGACAT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1853131 35 +   3513951 AAATTAACCAAAAGAGCCCTGGAATAATGAGACAT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1904285 35 +   1920343 AAATTAACCAAAAGAGCCCCGGAATAATGAGACAT
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7018196 35 -   7032639 AAATTAACCAAAAGAGCCCCGGAATAATGAGACAT
i aotNan1.NW_018502359v1    I 10 C 0
s dasNov3.JH570468            461463 35 -    852752 AAACCAACCCCAAAAGTTCGGAAGCAATGAGGCAT
i dasNov3.JH570468          C 0 I 599
e mm10.chr11                22105238 5401 - 122082543 I
e canFam3.chr9              21456066 1456 +  61074082 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e panPan2.chr17             16233418  0 +  83442489 C
e panTro5.chr17             16328533  0 +  83181570 C

a score=22509.000000
s hg38.chr17_JH159148v1_alt     7228 3 +     88070 CAA
s gorGor5.CYUI01015385v1     4069914 3 +   4267968 CAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2049712 3 -   2193130 TAA
i nomLeu3.chrUn_GL397460_1  C 0 I 616
s rheMac8.chr16             30126137 3 -  77216781 CAA
i rheMac8.chr16             C 0 I 712
s macFas5.chr16             28038991 3 -  80997621 CAA
i macFas5.chr16             C 0 I 711
s macNem1.NW_012014910v1     2095605 3 +  10377808 CAA
i macNem1.NW_012014910v1    C 0 I 702
s cerAty1.NW_012006043v1     1980970 3 -   8458610 CAA
i cerAty1.NW_012006043v1    C 0 I 705
s chlSab2.chr16             64925302 3 +  75148670 CAA
i chlSab2.chr16             C 0 I 690
s manLeu1.NW_012106252v1     2165246 3 +   4244037 CAA
i manLeu1.NW_012106252v1    C 0 I 708
s colAng1.NW_012122154v1     2188295 3 +   4569836 CAA
i colAng1.NW_012122154v1    C 0 I 700
s calJac3.chr5              46143825 3 - 159171411 TAA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1853166 3 +   3513951 CAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1904320 3 +   1920343 CAA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7018231 3 -   7032639 CAA
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e canFam3.chr9              21456066 1456 +  61074082 I
e dasNov3.JH570468            461498 599 -    852752 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e panPan2.chr17             16233418 0 +  83442489 C
e panTro5.chr17             16328533 0 +  83181570 C

a score=16497.000000
s hg38.chr17_JH159148v1_alt     7231 2 +     88070 GG
s gorGor5.CYUI01015385v1     4069917 2 +   4267968 GG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2050331 2 -   2193130 GG
i nomLeu3.chrUn_GL397460_1  I 616 C 0
s rheMac8.chr16             30126852 2 -  77216781 GG
i rheMac8.chr16             I 712 C 0
s macFas5.chr16             28039705 2 -  80997621 GG
i macFas5.chr16             I 711 C 0
s macNem1.NW_012014910v1     2096310 2 +  10377808 GG
i macNem1.NW_012014910v1    I 702 C 0
s cerAty1.NW_012006043v1     1981678 2 -   8458610 GG
i cerAty1.NW_012006043v1    I 705 C 0
s chlSab2.chr16             64925995 2 +  75148670 GG
i chlSab2.chr16             I 690 C 0
s manLeu1.NW_012106252v1     2165957 2 +   4244037 GG
i manLeu1.NW_012106252v1    I 708 C 0
s colAng1.NW_012122154v1     2188998 2 +   4569836 GG
i colAng1.NW_012122154v1    I 700 C 0
s calJac3.chr5              46143828 2 - 159171411 GG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1853169 2 +   3513951 GG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1904323 2 +   1920343 GG
i cebCap1.NW_016107730v1    C 0 I 86
s aotNan1.NW_018502359v1     7018234 2 -   7032639 AG
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e canFam3.chr9              21456066 1456 +  61074082 I
e dasNov3.JH570468            461498 599 -    852752 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e panPan2.chr17             16233418 0 +  83442489 C
e panTro5.chr17             16328533 0 +  83181570 C

a score=17381.000000
s hg38.chr17_JH159148v1_alt     7233 2 +     88070 TC
s gorGor5.CYUI01015385v1     4069919 2 +   4267968 TC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2050333 2 -   2193130 TC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30126854 2 -  77216781 TC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28039707 2 -  80997621 TC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2096312 2 +  10377808 TC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1981680 2 -   8458610 TC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64925997 2 +  75148670 TC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2165959 2 +   4244037 TC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2189000 2 +   4569836 TC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46143830 2 - 159171411 TC
i calJac3.chr5              C 0 I 769
s saiBol1.JH378271           1853171 2 +   3513951 TC
i saiBol1.JH378271          C 0 I 96
s aotNan1.NW_018502359v1     7018236 2 -   7032639 TC
i aotNan1.NW_018502359v1    C 0 I 100
s dasNov3.JH570468            462097 2 -    852752 TC
i dasNov3.JH570468          I 599 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e cebCap1.NW_016107730v1     1904325 86 +   1920343 I
e canFam3.chr9              21456066 1456 +  61074082 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e panPan2.chr17             16233418 0 +  83442489 C
e panTro5.chr17             16328533 0 +  83181570 C

a score=1222968.000000
s hg38.chr17_JH159148v1_alt     7235 288 +     88070 ACTGAAGGACAAGAGTATGGGCATTTGCCTTATGACC-TGCTTGGAAATGCAACTCAGAGGAGGACTTCTATGgtggtggtgaggaaaaagcactagaccacggctcaaaggagaaggcttgagttgcatcctggccacttatttactgtatgaccttatgtaacaccagggtgctaatctataacacgaagaagttagtttattctacctctgagggctcATTTATTTACATGATCTTGTGAGTTTGTTGATGTGTTCTGTGAGGTTCTAAATATTCTCAAACTGATT
s gorGor5.CYUI01015385v1     4069921 288 +   4267968 ACTGAAGGACAAGAGTATGGGCATTTGCCTTATGACC-TGCTTGGAAATGCAACTCAGAGGAGGACTTCTATGgcggtggtgaggaaaaagcactagaccactgctcaaaggagaaggcttgagttgcatcctggccactgatttactgtatgaccttatgtaacaccagggtgctaatctataacatgaagaagttagtttattttacctctgagggctcATTTATTTACATGATCTTGTGAGTTTGTTGATGTGTTCTGTGAGGTTCTAAATATTCTCAAACTGATT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2050335 288 -   2193130 ACTGAGGGACAAGAGTATGGGCGTTTGCCTTATGACC-TGCTTGGAAATGCAACTCAGAGGAGGACTTCTATGgtggtggtgaggaaaaagcactagaccatggctcaaaggagaaagcctgagttgcatcctggccacttatttaccatatggccttatgtaagACCAGTGTGCTAATCTATAACACAAAGAAGTTAGTTTATTTTACCTCTGAGGGCTCATTTATTTACATGATCTTGTGAGTTTGTTGATGTGTTCTGTGAGGTTCTAAATATTCTCAAACTGATT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30126856 288 -  77216781 ACTGAGGGACAAGAGTATGGGTGTTTGCCTTATGACC-TACCTGCAAATGCAACTCAGAGGAGGACCTCTATGTtggtggtgaggaaaaagcactagaccatggctcaaaggagaaggactgagttgcatcctggccacttatttactgtatgaccttatgtaagaccaatgtcctaatccacaacatgaagaagttagtttatgttacctctgagggctcATTTATTTACTTGATCTTGTGAGTCTGTTGATGTGTTCTGTGAGGTTCTAAATATTCTCAAACTGATT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28039709 288 -  80997621 ACTGAGGGACAAGAGTATGGGTGTTTGCCTTATGACC-TACCTGCAAATGCAACTCAGAGGAGGACCTCTATGTtggtggtgaggaaaaagcactagaccatggctcaaaggagaaggactgagttgcatcctggccacttatttactgtatgaccttatgtaagACCAATGTCCTAATCCACAACATGAAGAAGTTAGTTTATGTTACCTCTGAGGGCTCATTTATTTACATGATCTTGTGAGTCTGTTGATGTGTTCTGTGAGGTTCTAAATATTCTCAAACTGATT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2096314 288 +  10377808 ACTGAGGGACAAGAGTATGGGTGTTTGCCTTATGACC-TACCTGCAAATGCAACTCAGAGGAGGACCTCTATGTtggtggtgaggaaaaagcactagaccatggctcaaaggagaaggactgagttgcatcctggccacttatttactgtatgaccttatgtaagaccaatgtcctaatccacaacatgaagaagttagtttatgttacctctgagggctcatttatttacatgatcttgtgagtctgtTGATGTGTTCTGTGAGGTTCTAAATATTCTCAAACTGATT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1981682 288 -   8458610 ACTGAGGGACAAGAGTATGGGTGTTTGCCTTATGACC-TACCTACAAATGCAACTCAGAGGAGGACCTCTATGTtggtggtgaggaaaaagcactagaccatggctcaaaggagaaggacagagttgcatcctggccacttatttactgtatgaccttacgtaagACCAATGTCCTAATCCACAGCATGAAGAAGTTAGTTTATGTTACCTCTGAGGGCTCATTTATTTACATGATCTTGTGAGTCTGTTGATGTGTTCTGTGAGGTTCTAAATATTCTCAAACTGATT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64925999 288 +  75148670 ACTGAGGGACAAGAGTATGGGTGTTTGCCTTATGACC-TACCTGCAAATGCAACTCAGAGGAGGACCTCTATGTTGATGGTGAggaaaaagcactagaccatggctcaaaggagaaggactgagttgcatcctggccacttatttactgtatgaccttatgtaagACCAATGTCCTAATCCACAACATGAAGAAGTTAGTTTATGTTACCTCTGAGGGCTCATTTGTTTACATGATCTTGTGAGTCTGTTGATGTGTTCTGTGAGGTTCTAAATATTCTCAAACTGATT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2165961 288 +   4244037 ACTGAGGGACAAGAGTATGGGTGTTTGCCTTATGACC-TGCTTGGAAATGCAACCCAGAGGAGGACCTCTATGTtggtggtgaggaaaaagcactagaccatggctcaaaggagaaggactgagttgcatcctggtcacttatttactgtatgaccttatataagACCAATGTCCTAATCCACAGCATGAAGAAGTTAGTTTATTTTGCCTCTGAGGGCTCATTTATTTACATGATCTTGTGAGTCTGTTGATGTGTTCTATGAGGTTCTAAATATTCTCAAACTGATT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2189002 288 +   4569836 ACTGAGGGACAAGAGTATGGGTGTTTGCCTTATGACC-TACTTGCAAATGCAACTTAGAGGAGGACCTCTATGTTGGCGGTGAggaaaaagcactagaccatggctcaaaggagaaggattgagttgcatcctggccacttatttactgtatgaccttatgtaagACCAATGTCCTAATCCACAACACGACGAAGTTAGTTTATTTTACCTCTGCGGGCTCATTTATTTACATGATCTTGTGAGTCTGTTGATGTGTTCTGTGAGGTTCTAAATATTCTCAAACTGATC
i colAng1.NW_012122154v1    C 0 C 0
s dasNov3.JH570468            462099 251 -    852752 ACTGAAGAACAAGGCTATGAGT-TCTGACTTATAACCTTTTTTGGAAATGCAACTCAAAGCAGGG-TTCTGTGGTGGTAATGAGG---AAGGGCAAG--------TCAAAAGAGA----CTTGATTCTCTCCTGGCCACTTATTTGTGGTgtgtctttatgtaaa---------------------atgaagaaattagactaccttacctccgaggtctcatcgacttacattatcctgtgagttcatTTGTGTTTTCTGTTAAGTTTTAGTTATTCTTCAGTTGATT
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325  86 +   1920343 I
e canFam3.chr9              21456066 1456 +  61074082 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e saiBol1.JH378271           1853173  96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e panPan2.chr17             16233418   0 +  83442489 C
e panTro5.chr17             16328533   0 +  83181570 C

a score=221246.000000
s hg38.chr17_JH159148v1_alt     7523 61 +     88070 AAAACTGAAGCCTCTTGTACTTCTGGAACTGATGGGGAAGAGATTTGGAAGGATATCTTTT
s gorGor5.CYUI01015385v1     4070209 61 +   4267968 AAAACTGAAGCCTCTTGTACTTCTGGAACTGATGGGGAAGAGATTTGGAAGGATATCTTTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2050623 61 -   2193130 AAGACTGAACCCTCTTGCACCTCTGGAACCGATGGGGAAGAGATTTGGAAGGATATCTTTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30127144 61 -  77216781 AAGACTAAAGCCTCTTGCAACTCTGGAACCAATGGGAAAGAGATTTGGAAGGAAAAATTTT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28039997 61 -  80997621 AAGACTAAAGCCTCTTGCAACTCTGGAACCAATGGGAAAGAGATTTGGAAGGAAAAATTTT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2096602 61 +  10377808 AAGACTAAAGCCTCTTGCAACTCTGGAACCAATGGGAAAGAGATTTGGAAGGAAAAATTTT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1981970 61 -   8458610 AAGACTAAAGCCTCTTGCAACTCTGGAACCAATGGGAAAGAGATTTGGAAGGAAAAATTTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64926287 61 +  75148670 AAGACTAAAGCCTCTTGCAACTCTGGAACCGATGGGAAAGAGATTTGGAAGGAAAAATTTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2166249 61 +   4244037 AAGACTAAAGCCTCTTGCAACTCTGGAACCAATGGGAAAGAGATTTGGAAGGAAAAATTTT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2189290 61 +   4569836 AAGACTAAAGCCTCTGGCAACTCTGGAACCGATGGGAAAGAGATTTGGAAGGAAAAATTTT
i colAng1.NW_012122154v1    C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325 86 +   1920343 I
e canFam3.chr9              21456066 1456 +  61074082 I
e dasNov3.JH570468            462350  0 -    852752 C
e otoGar3.GL873537          22842526 1560 +  28711273 I
e saiBol1.JH378271           1853173 96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e panPan2.chr17             16233418  0 +  83442489 C
e panTro5.chr17             16328533  0 +  83181570 C

a score=438851.000000
s hg38.chr17_JH159148v1_alt     7584 102 +     88070 TAGTATGCCATAAAATAAGAAATGTGATTGACTAATTT---------TGAGGTCCAAAAAGAAAATTAGAAACAAAAAGGAGGA--GGGGGAGAGAGGGAACTTGATATCACA
s gorGor5.CYUI01015385v1     4070270 103 +   4267968 TAGTATGCCATAAAATAAGAAATGTGATTGACTAAATT---------TGAGGTCCAAAAAGAAAATTAGAAACAAAAAGGAGGA-GGGGGGAGAGAGGGAACTTGATATCACA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2050684 113 -   2193130 CagtatgccataaaataagaaatgtgattgactaaattatttgcatccgaggtccaaaaagaaaaTTAGAAACAAAAAGGGGGGAGGGGGGAGAGAGGGAACTTGGTATCACA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30127205 111 -  77216781 tagtatgccataaaataagaaatgtgattgactaaattatttgcatctgaggtccaaaaagaaaaCTAGAAACAAAAA-GCGGA-GGGGGGAGAGAGGGAACTTGATATCACA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28040058 111 -  80997621 tagtatgccataaaataagaaatgtgattgactaaattatttgcatctgaggtccaaaaagaaaaCTAGAAACAAAAA-GCGGA-GGGGGGAGAGAGGGAACTTGATATCACA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2096663 111 +  10377808 tagtatgccataaaataagaaatgtgattgactaaattatttgcatctgaggtccaaaaagaaaaCTAGAAACAAAAA-GCGGA-GGGGGGAGAGAGGGAACTTGATATCACA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1982031 111 -   8458610 tattatgccataaaataagaaatgtgattgactaaattatttgcatctgaggtccaaaaagaaaaCTAGAAACAAAAA-GAGGA-GGGGGGAGAGAGGGAACTTGATATCACA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64926348 112 +  75148670 tagtatgccataaaataagaaatgtgattgactaaattatttgcatctgaggtccaaaaagaaaaCTAGAAACAAAAAGGAGGA-GCGGGGAGAGAGGGAACTTGATACCACA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2166310 111 +   4244037 tagtatgccacaaaataagaaatgtgattgactaaattatttgcatctgaggtcc-aaaagaaaaCTAGAAACAAAAAGGAGGA-GAGGGGAGAGAGGGAACTTGATATCACA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2189351 112 +   4569836 tagtatgccataaaataagaaatgtgattgactaaattatttgcatctgaggtccaaaaagaaaaTTAGAAACAAAAAGGAGGA-GCAGGGAGAGAGGGAACTTGGTATCACA
i colAng1.NW_012122154v1    C 0 C 0
s canFam3.chr9              21457522 105 +  61074082 taatgtgcc-----atcaggaatataattaactcaattatttgcaactaaaatccaaaaagaaaaaTCCAAAACACAG-GAGGA--AAAGAAGAGAGGGACCTTGATATTGCA
i canFam3.chr9              I 1456 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325  86 +   1920343 I
e dasNov3.JH570468            462350   0 -    852752 C
e otoGar3.GL873537          22842526 1560 +  28711273 I
e saiBol1.JH378271           1853173  96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e panPan2.chr17             16233418   0 +  83442489 C
e panTro5.chr17             16328533   0 +  83181570 C

a score=149266.000000
s hg38.chr17_JH159148v1_alt     7686 37 +     88070 AAGGAAGTGCCATGGATGGAATGTCTCCCAGAAACGA
s gorGor5.CYUI01015385v1     4070373 37 +   4267968 AAGGAAGTGCCATGGATGGAATGTCTCCCAGAAACGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2050797 37 -   2193130 AAGGAAGTGCCATGGCTGGAATGTCTCCCAGAAATGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30127316 37 -  77216781 AAGGAATTGCCATGGATGGAATGTCTCCCGGAAATGA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28040169 37 -  80997621 AAGGAATTGCCATGGATGGAATGTCTCCCGGAAATGA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2096774 37 +  10377808 AAGGAATTGCCATGGATGGAATGTCTCCCGGAAATGA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1982142 37 -   8458610 AAGGAATTGCCATGGATGGAATGTCTCCCGGAAATGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64926460 37 +  75148670 AAGGAATTGCCATGGATGGAATGTCTCCTGGAAATGA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2166421 37 +   4244037 AAGGAATTGCCATGGATGGAATGTCTACCGGAAATGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2189463 37 +   4569836 AAGGAACTGCCATGGATGGAATGTCTCCCAGAAATGA
i colAng1.NW_012122154v1    C 0 C 0
s canFam3.chr9              21457627 37 +  61074082 AAAGAATGACAATAGTTGGAATATATTTTAGAAAtga
i canFam3.chr9              C 0 I 4882
s dasNov3.JH570468            462350 10 -    852752 CAGAAAGTAC---------------------------
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325 86 +   1920343 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e saiBol1.JH378271           1853173 96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e panPan2.chr17             16233418  0 +  83442489 C
e panTro5.chr17             16328533  0 +  83181570 C

a score=1018892.000000
s hg38.chr17_JH159148v1_alt     7723 239 +     88070 TCTTTGGGTGGACACCCTGTGCAAAACCTCTCTTGAgacatgaatggaacttcacggaagatgaatcctta----agtaagcctgtgaaagaattctcaaaagtattatttctcagagatttcaaaattaaaataacaattacatattactttacaggtattagatttgcaaaaaatagagtgctATATcagagcccagcaaacttatcctgtaaagggacagata-tacataatttaggcttt
s gorGor5.CYUI01015385v1     4070410 240 +   4267968 CCTTTGGGTGGACACCCTGTGCAAAACCTCTCTTGAgacatgaatggaacttcacggaagatgaatcctta----agtaagcctgtgaaagaattctcaaaagtattatttctcagagatttcaaaattaaaataacaattacatattactttacaggtattagatttgcaaaaaatagagtgctATATcagagcccagcaaacttattctgtaaagggacagatagtacataatttaggcttt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2050834 240 -   2193130 CGTTTTGGTGGACACCCTGTGAAAAACCTCTCTTGAgacatgaatggaacttcacggaagacgaatcctta----agtaagcctgtgaaagaattctcaaaagtattatttctcaaagatttcaaaattaaaataacaattacgtattactttacaggtattagatttgcaaaaaacagagtgctATATcagagcccagcaaacttattctgtaaagggacagatagtacataattcaggcttt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30127353 240 -  77216781 CATTTTGGTGGACACCCTGTGCAAAATCTCTCTTGAGACATGAATGGAACTTCGTAGAAGATGAATCCTTA----AGAAAGCCTGTGAAAGAATTCTCGAAAGTATTATTTCTGAGAGATTTCAAaattaaaataacaattacatattactttacaGGTATTAGATTTGCAAAAAATAGAGTGCTCTATTAGAGCCTAgcaaacttattctgtaaagggacagagagcacataatttaggcttt
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28040206 240 -  80997621 CATTTTGGTGGACACCCTGTGCAAAATCTCTCTTGAgacatgaatggaacttcgtagaagatgaatcctta----agaaagcctgtgaaagaattctcgaaagtattatttctgagagatttcaaaattaaaataacaattacatattactttacaggtattagatttgcaaaaaatagagtgctCTATTAGAGCCTAgcaaacttattctgtaaagggacagagagcacataatttaggcttt
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2096811 240 +  10377808 CATTTTGGTGGACACCCTGTGCAAAATCTCTCTTGAGACATGAATGGAACTTCGTAGAAGATGAATCCTTA----AGAAAGCCTGTGAAAGAATTCTCGAAAGTATTATTTCTGAGAGATTTCAAaattaaaataacaattacatattactttacaGGTATTAGATTTGCAAAAAATAGAGTGCTCTATTAGAGCCTAgcaaacttattctgtaaagggacagagagcacataatttaggcttt
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1982179 240 -   8458610 CATTTTGGTGGACACCCTGTGCAAAATCTCTCTTGAGACATGAATGGAACTTCGTAGAAGATGAATCCTTA----AGAAAGCCTGTGAAAGAATTCTCGAAAGTATTATTTCTGAGAGATTTCAAaattaaaataacaattacatattactttacaGGTATTAGATTTGCAAAAAATAGAGTGCTCTATTAGAGCCTAgcaaacttattctgtaaagggacagacagtaggtaatttaggcttt
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64926497 240 +  75148670 CATTTTGGTGGACACCCTGTGCAAAATCTCTCTTGAgacatgaatggaactgcgtagaagatgaatcctta----agaaagcctgtgaaagaattctcgaaagtattatttctgagagatttcaaaattaaaataaaaattacatattactttacaggtattagatttgcaaaaaatagagtgctCTATcagagcctagcaaacttattctgtaaagggacagagagtacgtaatttaggcttt
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2166458 240 +   4244037 CATTTTCGTGGACACCCTGTGCAAAATCTCTCTTGAgacgtgaatggaacttcgcagaagatgaatcctta----agaaagcctgtgaaagaattctcgaaagtattatttctgagagatttcaaaattaaaataacaattacatattactttacaggtattagatttgcaaaaaatagagtgctCTATcagagcctagcaaacttattctgtaaagggacagagagtacgtaatttaggcttt
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2189500 238 +   4569836 CATTTTGGTGGACACCCTGTGCAAAATCTCTCTTGAgacatgaatggaacttcatagaagatgaatcctta----agaaagcctgtgaaagaattctcgaaagtattatttctgagagatttcaagattaaaataacaattacatattactttacagatattagatttgcaaaaaatagagtgctATATcagagcctagcaaacttactctgtaaagggacag--agtacgtaatttaggcttt
i colAng1.NW_012122154v1    C 0 C 0
s dasNov3.JH570468            462360 211 -    852752 -------------------------------CTTGAAatatgaatggaactttacagaaggtgactccctaatctaataaacctatgcaaagatgctcaaaatta-aatttttcatagaaatccaaattaaaataataattagatatcactttacagccattagactggcaaaacatacaatgctATATcagaggttggcaaattt-ttctgtgaaagtatagctagtaaatattttagggttt
i dasNov3.JH570468          C 0 I 648
e mm10.chr11                22105238 5401 - 122082543 I
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325  86 +   1920343 I
e canFam3.chr9              21457664 4882 +  61074082 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e saiBol1.JH378271           1853173  96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e panPan2.chr17             16233418   0 +  83442489 C
e panTro5.chr17             16328533   0 +  83181570 C

a score=3636705.000000
s hg38.chr17_JH159148v1_alt     7962 942 +     88070 gtggggcacatggtctctgttgcaactactgaattttgccgttgtatcattgcattatatcattacatttatagacaatatgtaagcaaatgagtgtggctgggttctaataaaactttgtaaaaacaggctggggctctgtttggctcatggtgagacgggaagagtttccttgttcccctcgcagggcgtgcaacgggggcgtgg--------------ctcgcttcttccgtgccccactgctcacacttctaggggaagcatgcagatgggcaggctttggggctctgaccccacggcagcgtctaggggtgagtgtttacagctgaagccccagtgggtgtgtgtacagggtactctttcagtttagcctccgtccatagatgggttg----tgttagttagctcaattagaccc-cctgccttatggcaaggacagagggctttctgtatcccagggtttcctgccttgttgtactggaggaatcggatcacacatgggcttggagaatgagtgcaaggttttattgagtggaagtagctctcagcagacgggggagccagaagggggatggagtgggaaggtggttttcccctggagttgggctgctcagccaggcttccctcatcccgcccccgacaaactcactatggttccccctgtcgatggcctgccgtcctgctggcgtctgccgctgcctgtcgg--tgtgctcttctgacgatttgctcctctcggatgtccagctgcctgtgtctcttcccactaggcacaggatgagggcgtggtgggccagggtggttttgggaaatgcaacgtttgggcacaaaaacagaaatgcctgttcttattcattcagaaatgcctgttccctaggtccgtgggcacagtaggggtggagtcctcaccagggacccacccttcttctcccagcact-------------tccctgcc-------ccgctcctgtatcaa
s gorGor5.CYUI01015385v1     4070650 941 +   4267968 gtggggcacatggtctctgttgcaactactgaattttgccgttgtatcattgcattatatcattatatttatagacaatatgtaagcaaatgagtgtggctgggttctaataaaactttgtaaaaacaggctggggctctatttggctcatggtgaaacgggaagagtttccttgttcccctctcagggcgtgcaacgggggcgaag--------------ctcgcttcttccgtgccccactgctcatacttctgggggaagcatgcagatgggcaggctttggggctctga-cccacggcagcgtctaggggtgagtgtttacagctgaagccccagtgggtgtgtgtacacggtactctttcagtttagcctccgtccatagatgggttg----tgttagttagctcaattagaccc-cctgccttattgcaaggacagagggctttctgtatcccagggtttcctgccttgttgtactggaggaatcggatcacacatgggcttggagaatgagtgcaaggttttattgagtggaagtagctctcagcagacgggggagccagaagggggatggagtgggaaggtggttttcccctggagttgggctgctcagccaggcttccctcatcccgcccccgacaaactcactatggttccccctgtcgatggcctgccgtcctgctggcgtctgccgctgcctgtcgg--tgtgctcttctgacgatttgcttctctcggatgtccagctgcctgtgtctcttcccactaggcacaggatgagggcgtggtgggcaagggtggttttgggaaatgcaacgtttgggcacaaaaacagaaatgtctgttctcattcatttagaaatgccttttccctaggtccgtgggcacagtaggggtggagtcctcgccagggacccacccttcttctcccagcact-------------tccctgcc-------ccgctcctgtgtcaa
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2051074 946 -   2193130 gtggggcacatggactctgttgcaactactgaattttgccatcgtatcattgcattgtatcattacatttataggcaatatgtaagcaaatgagtgtggctgggttctaataaaactttgtaaaaacaggctggggctttatttggctcatggtgaaacgggaaaagtttccttgttcccctcgcagggcatgcaatgggggcgtgg--------------ctggcttcttccgtgccctgctgctcaaactcctaggggaagcatgcagatgggcaggctgtggggctctgaccccacggcagcgtctaggggtgagtgtttacagctgaagccccagtgggtgtgtgtatagggtactctttccgtttagccttcgtccatagatgtgttgtgtttgttaattagctcaattagaccctcctgccttattacaaggacagagggctttctgtatcccagggtttcctgccttggtgtactggaagaatcggatcacacgtgggattggagaatgagtgcaaggttttattgagtggaagtagctctcagcagatggtggagccagaagggggatggagtgggaaggtggttttcccctggagttgggctgctcagccaggctcccctcatcccgcccccaacaaactctccatggttccccctgtcgatggcctgccggcttgctggcatctgccgctgcctgtcggtatgtgctcttccgccgatttgttcccctcggatgtccagctgcctgtgtctcttcccaccaggcacaggatgagggcgtggtgggccagggtggttttgggaaatgcaacgtttgggcacaaaaacagaaatgcctgttctcattcattcagaaatgcctgttccctaggtccgtgggcacagtaggggtggagtcctcgccagggacccacgcttctt---ccagcact-------------tccctgcc-------ccactcccatatcaa
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30127593 959 -  77216781 gtggggcacatggtctctgttgcaactactgaatgttgccattgtaccattgcattgtatcattacatttatagacaatatgtaagcaaatgagtgtggctgggttctaataaaactttgtaaaaacgggctggggttctatttggctcatggtgaaacgggaaaagtttccttgttcccctcgcagggcgtgcaatgggggcatggcaatgggggcatgactggcttcttctgtgccccgctgctcagacttctaggggaagcgtgcagatgggcaggctgtggggctctgaccccacggcagtgtctaggggtgagtgtttacagctgaagccccagtggatgtgtgtacagggtactctttcaggttagcctccctccataggtgggttg----tgttagttagctcaattagaccc-cctgccttattgcaaggacagagggctttctgtatcccagggtttcctgccttggtgtacgggaggaatcggatcacacatgggcttggaggatgagtgcaaggttttattgagcggaagtagctctcagcagatggtggagccagaagggggatggagtgggaaggtgg-tttcgtctggagttgggccgctcagtcaggctcctcccaccccgccccc-acaaactctccgtggtttccccagtcgatggcctgccggcctgctggcgtctgccgccgcctgtcgg--tgtgctcttcccccggtttgtttctct-ggatgtccagctgcctgtgtctcttcccaccaggcacaggatgagggcgtagtgggccagggtggttttgggaattgcaacatttggacacaaaaacagaaatgcctgttctcattcattcagaaattcctgttccctaggtccatgggcacagttggggtggagtcctcgccagggacccagccttcttctcccagcact-------tcctgccccctgcc-------cccctcccatatcaa
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28040446 959 -  80997621 gtggggcacatggtctctgttgcaactactgaatgttgccattgtaccattgcattgtatcattacatttatagacaatatgtaagcaaatgagtgtggctgggttctaataaaactttgtaaaaacgggctggggttctatttggctcatggtgaaacgggaaaaatttccttgttcccctcgcagggcgtgcaatgggggcatggcaatgggggcatgactggcttcttccgtgccccgctgctcagacttctaggggaagcgtgcagatgggcaggctgtggggctctgaccccacggcagcgtctaggagtgagtgtttacagctgaagccccagtggacgtgtgtacagggtactctttcaggttagcctccctccataggtgggttg----tgttagctagctcaattagaccc-cctgccttattgcaaggacagagggctttctgtatcccagggtttcctgccttggtgtaccggaggaatcggatcacacatgggcttggaggatgagtgcaaggttttattgagtggaagtagctctcagcagatggtggagccagaagggggatggagtgggaaggtgg-tttcctctggagttgggccgctcagtcaggctcctcccaccccgctccc-acaaactctccgtggtttccccagtcgatggcctgccggcctgctggcgtctgccgccgcctgtcgg--tgtgctcttcccccggtttgtttctct-ggatgtccagctgcctgtgtctcttcccaccaggcacaggatgagggcgtagtgggccagggtggttttgggaattgcaacatttggacacaaaaacagaaatgcctgttctcattcattcagaaattcctgttccctaggtccatgggcacagttggggtggagtcctcgccagggacccagccttcttctcccagcact-------ccctgccccctgcc-------cccctcccatatcaa
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2097051 956 +  10377808 gtggggcacatggtctctgttgcaactactgaatgttgccattgtaccattgcattgtatcattacatttatagacaatatgtaagcaaatgagtgtggctgggttctaataaaactttgtaaaaacgggctggggttctatttggctcatggtgaaacgggaaaagtttccttgttcccctcgcagggcgtgcaatgggggcatggcaatgggggcatgactggcttcttccgtgccccgctgctcagacttctaggggaagcgtgcagatgggcaggctgtggggctctgaccccacggcagcgtctaggggtgagtgtttacagctgaagccccagtggatgtgtgtacagggtactctttcaggttagcctccctccataggtgggttg----tgttagttagctcaattagacca-cctgccttattgcaaggacagagggctttctgtatcccagggtttcctgccttggtgtaccagaggaatcggatcacacatgggcttggaggatgagtgcaaggttttattgagtggaagtagctctcagcaga---tggagccagaagggggatggagtgggaaggtgg-tttcctctggagttgggccgctcagtcaggctcctcccaccccgccccc-acaaactctccgtggtttccccagtcgatggcctgccggcctgctggcgtctgccgccgcctgtcgg--tgtgctcttcccccggtttgtttctct-ggatgtccagctgcctgtgtctcttcccaccaggcacaggatgagggcgtagtgggccagggtggttttgggaattgcaacatttggacacaaaaacagaaatgcctgttctcattcattcagaaattcctgttccctaggtccatgggcacagttggggtggagtcctcgccagggacccagccttcttctcccagcact-------tcctgccccctgcc-------cccctcccatatcaa
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1982419 963 -   8458610 gtggggcacatggtctctgttgcaactactgaatgttgccattgtaccattgcattgtatcattacatttatagacaatatgtaagcaaatgagtgtggctgggttctaataaaactttgtaaaaacgggctggggttctatttggctcatggtgaaacgggaagagtttccttgttcccctcgcagggcgtgcaatgggggcatggcaataggggcatgactggcttcttccgtgccccactgctcagacttctaggggaagcgtgcagatgggcaggctgtggggctctgaccccacggcagcgtctaggggtgagtgtttacagctgaagccccagtggatgtgtgtacagggtactctttcaggttagcctccctccataggtgggttg----tgttagttacctcaattagaccc-cctgccttattgcaaggacagaggactttctgtgtcccagggtttcctgccttggtgtaccggaagaatcggatcacacatgggcttggaggatgagtgcaaggttttattgagtggaagtagctctcagcagatggtggagccagaagggggatggagtgggaaggtgg-tttcccctggagttgggccgctcagtcaggctcctcccaccccgccccc-acaaactctccgtggtttccccagtcgatggcctgccggcctgctggcgtctgccgcggcctgtcag--tgtgctcttcccccggtttgtttctct-ggatgtccagctgcctgtgtctcttcccaccaggcacaggatgagggcgtagtgggccagggtggttttgggaattgcaacatttggacacaaaaacagaaatgcctgttctcattcattcagaaattcctgttccctaggtccatgggcacagttggggtggagccctcgccagggacccagccttctg---ccagcact-------ccctgccccctgcccCCTGCGCCCCTCCCATATCAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64926737 959 +  75148670 gtggggcacatggtctctgttgcaactactgaatgttgccattgtaccattgcattgtatcattacatttatagacaatatgtaagcaaatgagtgtggctgggttctaataaaactttgtaaaaacgggctggggttctatttggctcatggtgaaacgggaaaagtttccttgttcccctcgcagggcgtgcaatgggggcgtggcaatgggggcatgactggcttcttccgtgccccgctgctcagacttctaggggaagcgtgcagatgggcaggctgtggggctctgaccctacggcagcgtctaggggtgagtgtttacagctgaagccccagtggatgtgtgtacagggtactctttcaggttagcctccctccataggtgggttg----tgttagttagctcaattagaccc-cctgccttattgcaaggacagagggctttctgtatcccagggtttcctgccttggtgtaccggaagaatcggatcacacatgggcttggaggatgagtgcaaggttttattgagtggaagtggctctcagcagatggtgcagccagaagggggatgcagtgggaaggtgg-tttcccctggagttgggccgctcagtcaggctcctcccaccccgccccc-acaaactctccgtggtttccccagtcgatggcctgccggcctgctggcgtctgccgcggcctgtagg--tgtgctcttcccccgggttgtttctct-ggatgtccagctgcctgtgtctcttcccactaggcacaggatgagggcgtagtgggccagggtggttctgggaaatgcaacatttggacacaaaaacagaaatgcctgttctcattctttcagaaattcctgttccctaggtccatggacacaggtggggtggagtcctcgccagggacccagccttcttctcccagcact-------ccctgccccctgcc-------cccctcccgtatcaa
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2166698 964 +   4244037 gtggggcacatggtctctgttgcaactactgaatgttgccattgtaccattgcattgtatcattacatttatagacaatatgtaagcaaatgagtgtggctgggttctaataaaac--tgtaaaaacgggctggggttctatttggctcatggtgaaacgggaaaagtttccttgttcccctcgcagggcgtgcaatgggggcatggcaatgggggcatgactggcttctcccgtgacccgctgctcagacttctaggggaagcgtgcagatgggcaggctgtggggctctgaccccaaggcagcgtctaggggtgagtgtttacagctgaagccccagtggatgtgtgtacagggtactctttcaggttaacctccctccataggtgggttg----tgttagttagctcaattagaccc-cctgccttattgcaaggacagagggctttctgtatcccagggtttcctgccttggtgtaccggaggaatcggatcacacatgggcttggaggatgagtgcaaggttttattgagtggaagtagctctcagcagatggtggagccagaagggggatggagtgggaaggtgg-tttcccctggagttgggccgctcagtcaggctcctcccaccccgccccc-acaaactctccgtggtttccccagtcgatggcctgccggcctgctggcgtctgcggcggcctgtcgg--tgtgctcttcccccggtttgtttctct-ggatgtccagctgcctgtgtctcttcccactaggcacaggatgagggcgtagtgggccagggtggttttgggaattgcaacatttggacacaaaaacagaaatgcctgttctcattctttcagaaattcctgttccctaggtccatgggcacagttggggtggagccctcgccagggacccagccttcttctcccagcactccctgccccctgcccCCTGCC-------CCCCTCCCATTTCAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2189738 941 +   4569836 gtggggcacatggtctctgttgcaactactgaatgttgccattataccattgcattgtatcattacatttatagacaatatgtaagcaaatgaatgtggctgggttctaataaaactttgtaaaaccaggctggggttctatttggctcatggtgaaacgggaaaagtttccttgttcccctcgcaaggcgtgcaatgggggcatggcaatgggggcatgactggcttcttccgtgccccgctgctcaaacttctaggggaagcgtgcagatgggcaggttgtggggctctgaccccacggcagcgtctaggggtgagtgtttacagctgaagccccaatggacgtgtgtacaggatactctttcaggttagcctccctccataggtgggtgg----tgttagttagctcaattagaccc-cctgccttattgcaaggacagagggctttctgtatcccagggtttcctgccttggtgtactggaagaatcggatcacacatgggcttggaggatgagtgcaaggttttattgagtggaagtagctctcagcagatgatggagccagaagggggatggagtgggacggtgg-ttttccctggagttgggctgctcagtcaggctcccctcaccccgccccc-acaaactctacacggtttccc-------------------------gcatctgccgtggcctgtcgg--tgtgctcttccgctggtttgtttctct-ggatgtccagctgcctgtgtctcttcccactaggcacaggatgagggcgcagtgggccagggtggttttgggaaatgcaacatttggacacaaaaacagaaatgcctgttctcattcattcagaaattcctgttccctaggtccatgggcagagttggggtggagtccttgccagggacccagtcttcttctcccagtactccttgccccctgccccctgcc-------cgcctcccatatcaa
i colAng1.NW_012122154v1    C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325  86 +   1920343 I
e canFam3.chr9              21457664 4882 +  61074082 I
e dasNov3.JH570468            462571 648 -    852752 I
e otoGar3.GL873537          22842526 1560 +  28711273 I
e saiBol1.JH378271           1853173  96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e panPan2.chr17             16233418   0 +  83442489 C
e panTro5.chr17             16328533   0 +  83181570 C

a score=689394.000000
s hg38.chr17_JH159148v1_alt     8904 161 +     88070 tgggccatagttttctgactcctgTgctatataatgccaagtgttggtgggagtg--ggaatttac---aggaattttcctgcattgctaatgggattgttggcttgtttggccactctaaag-aacaatctgaaactatttatgtaaattatgtaagtg-atgctcc
s gorGor5.CYUI01015385v1     4071591 161 +   4267968 tgggccatagttttctgactcctgTgctatataatgccaagtgttggtgggagtg--ggaatttac---aggaattttcccgcattgctaatgggattgttggcttgtttggccactctaaag-aacaatctgaaactatttatgtaaattatgtaagtg-atgctcc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2052020 162 -   2193130 tgggccatagttttctgactcctgTgctatataatgctaagtgttgatgggagtg--ggaatttac---aggaattttcctgcattgctaatggcattgttggcttgtttggccattctaaagaaaccatctgaaactatttatgtaaattatgtaagtg-atgctcc
i nomLeu3.chrUn_GL397460_1  C 0 M 221
s rheMac8.chr16             30128552 160 -  77216781 tgggccatagttttctgactcatgTgctatgtaacgccaagtgttggtgggagtg--ggaatttacattagcaattt----gcattgctaatgggattgttggcttatttggtcactttaaag-aacaatctgaaactatttatgtaaattatgtaagtg-atgctgc
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28041405 160 -  80997621 tgggccatagttttctgactcatgTgctatataacgccaagtgttggtgggagtg--ggaatttacattagcaattt----gcattgctaatgggattgttggcttatttggtcactttaaag-aacaatctgaaactatttatgtaaattatgtaagtg-atgctgc
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2098007 160 +  10377808 tgggccatagttttctgactcatgTgctatataatgccaagtgttggtgggagtg--ggaatttacattagcaattt----gcattgctaatgggattgttggcttatttggtcactttaaag-aacaatctgaaactatttatgtaaattatgtaagtg-atgctgc
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1983382 160 -   8458610 TGGGCCATAGTTTTCTGACTCATGTgctatataatgccaaatgtcagtgggagtg--gaaatttacattagcaattt----gcattgctaatgggattgttggcttatttggtcactttaaag-aacaatctgaaactatttatgtaaattatgtaagtg-atgctgc
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64927696 160 +  75148670 tgggccatagttttctgactcatgTgctatataacgccaagtgttggtgggagtg--ggaatttacattagcaattt----gcattgctaatgggattgttggcttatttggtcactttaaag-aacaatctgaaactatttatgtaaattatgtaagtg-atgctgc
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2167662 160 +   4244037 TGGGCCATAGTTTTCTGACTCATGTgctatataacgccaagtgttggtgggagtg--ggaatttacattagcaattt----gcattgctaatgggattgttggcttatttggtcactttaaag-aacaatctgaaactatttatgtaaattatgtaagtg-atgctgc
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2190679 160 +   4569836 tgggccatagttttctgactcatgTgctatgtaatgccaagtgttggtgggagtg--gaaatttacattagcaattt----gcattgctaatgggattgttggcttatttggtcactttaaag-aacaatctgaaactatttacgtaaattatataagtg-atgctgc
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22844086 164 +  28711273 tgggccatacttttctgactcctgtgttatataatgccaagtgttggtaggagggttgagttttgt---aggaatcttcctgcattattggtgggattgttagttcttttggccatttttaag-aacgacctgaaactctttatgcaaattttataaatgtatgtccc
i otoGar3.GL873537          I 1560 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325  86 +   1920343 I
e canFam3.chr9              21457664 4882 +  61074082 I
e dasNov3.JH570468            462571 648 -    852752 I
e saiBol1.JH378271           1853173  96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e panPan2.chr17             16233418   0 +  83442489 C
e panTro5.chr17             16328533   0 +  83181570 C

a score=703159.000000
s hg38.chr17_JH159148v1_alt     9065 197 +     88070 atgatccagcaatccaacacctgagtgtgtatttccagaaaattctcacacaggtcctcagggaggtgtacatgtggatgttcactatagcatccctatggtggcaaaaacgtcaaaggaaagctggtgtccaaca-------ctgtgaaagtgggtaggcaac--tcggtgatcctcttcatggagtatcatgcaggaattaata
s gorGor5.CYUI01015385v1     4071752 197 +   4267968 atgatccagcaatccaacacctgagtgtgtatttccagaaaattctcacacaggtcctcagggaggtgtacatgtggatgttcactgtagcatccctatggtggcaaaaacgtcaaagggaagctggtgtctaaca-------ctgtgaaagtgggtaggcaac--ttggtgatcctcttcatggagtatcatgcaggaattaata
i gorGor5.CYUI01015385v1    C 0 C 0
s rheMac8.chr16             30128712 197 -  77216781 atgatccagcaatcctgcacctgagtgtgtatttccagaaaattctcacacaggtccatagagagatgtacatatggatgttcactgtagcatcactgtggtggcaagaacgtcaaaggaaagttggtgtccacca-------ctgtgaaagtgggtaggcaac--ttggtgattctcttcatggagtattgtgcagaaattagta
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28041565 197 -  80997621 atgatccagcaatcctgcacctgagtgtgtatttccagaaaattctcacacaggtccatagagagatgtacatatggatgttcactgtagcatcactgtggtggcaagaacgtcaaaggaaagttggtgtccacca-------ctgtgaaagtgggtaggcaac--ttggtgattctcttcatggagtattgtgcagaaattagta
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2098167 197 +  10377808 atgatccagcaatcctgcacctgagtgtgtatttccagaaaattctcacacaggtccatagagagatgtacatatggatgttcactgtagcatcactgtggtggcaagaacgtcaaaggaaagttggtgtccacca-------ctgtgaaagtgggtaggcaac--ttggtgattctcttcatggagtattgtgcagaaattagta
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1983542 197 -   8458610 atgatccagcaatcctgcacctgagtgtgtatttccagaaaattctcacacaggtccatagagaggtgtacatatggatgttcactgtagcatcaccgtggtggcaaaaatgtcaaaggaaagttggtgtccacca-------ctgtgaaagtgggtaggcaac--ttggtgattctcttcatggagtattgtgcagaaattagta
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64927856 197 +  75148670 atgatccagcaatcctgcacctgagtgtgtatttccagaaaattctcacacaggtccatagaggggtgtacatatggatgttcactgtagcatcactgtggtggcaagaacgtcaaaggaaagttggtgtccacca-------ctgtgaaagtgggtaggcaac--ttggtgattctcttcgtggagtattgtgcagaaattagta
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2167822 196 +   4244037 atgatccagcaatcctgcacctgagtgtgtatttccagaaaattctcacacaggtccat-gaggggtgtacatatggatgttcactgtagcatcactgtggtggcaagaacgtcaaaggaaagttggtgtccacca-------ctgtgaaagtgggtaggcaac--ttggtgattctcttcatggagtattgtgcagaaattagta
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2190839 197 +   4569836 atgatccagcaatcctgcccctgagtgtgtatttctagaaaattctcacacaggtccatagagaggtgtgcatacggatgttcactgtagcatcactgtggtggcaaaaacgtcaaaggaaaattggtgtccacca-------ctgtgaaagtggataggcaac--ttggtgattctcttcatggagtattgtgcaggaattagta
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22844250 204 +  28711273 atggtccagcagtccttcttctgagtatacattccaagaaaattctcacacagatccatagagagacgcatatgaggata-tcactgtggcatt-ctatagtgccatgaacttcaagggaaatccagtgtccactgtccacttctgggcaagtggataggcaacgtgtggtgattctcatcacgtagtattatgctggaattagaa
i otoGar3.GL873537          C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325  86 +   1920343 I
e canFam3.chr9              21457664 4882 +  61074082 I
e dasNov3.JH570468            462571 648 -    852752 I
e saiBol1.JH378271           1853173  96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e nomLeu3.chrUn_GL397460_1   2052182 221 -   2193130 M
e panPan2.chr17             16233418   0 +  83442489 C
e panTro5.chr17             16328533   0 +  83181570 C

a score=1859477.000000
s hg38.chr17_JH159148v1_alt     9262 475 +     88070 acaatagattacatatacacactgtagcatagatggatttttaaaaa--ttctgcttaatgacaaaccagaatgagatatattactgattgctatttacataaagtatatgtgtactgaac-------aatactttataaggatatatacaaatccattaaataaatttaatatgcgttgaatatacattagacagaatagcatagtggcctataggaaacgaagggagtaaagggagaagaagaagtaaattaactgatttataagtacat--------aaaaaataaataagagagggaccatgcaaaaatcacagatgata---------------------atAATTCAATTATTTATAACTAAGGTCCCAAAAGAAAATTTTTTTAAAAAGGAA-GAAGGAGAGAGAGGGAACTTGACACCACAAAGGAATTACCGTGGATAGAATGTCTTCCAGAAA--------------------------TGACATTTTGATGGACACCCTGTTCAAATTCTCTCTCCCACACCTTCCATG
s gorGor5.CYUI01015385v1     4071949 475 +   4267968 acaatagattacatatacacactgtagcatagatggatttttaaaaa--ttctgcttaatgacaaaccagaatgagatatattactgattgctatttacataaagtatatgtgtactgaac-------aatactttataaggatatatacaaatccattaaataaatttaatatgctttgaatatacattagacagaacagcatagtggcctataggaaaagaagggagtaaagggagaagaagaagtaaattaactgatttatacgtacat--------aaaaaagaaataagagagggaccatgcaaaaatcacagatgata---------------------atAATTCAATTATTTATAACTAAGGTCCCAAAAGAAAATTTTTTTAAAAAGGAA-GAAGGAGAGAGAGGGAACTTGACACCACAAAGGAATTACCGTGGATAGAATGTCTTCCAGAAA--------------------------TGACATTTTGAGGGACACCCTGTTCAAATTCTCTCTCCCACACCTTCCATG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2052406 475 -   2193130 acagtagattacatatacacagtgtagcatggatggatttttaaaaa--ttctgcttaatgacaaaccagaatgagatatactactgattgctatttacataaagtatatgtatactaaac-------aatactttataaggatatatacaaatccattaaataaacttaatatgcattgaatatacattagacagaatagcatagtggcctataggaaaagaagggagtaaagggagaagaagaagtaaattaactgatttataagtacat--------aaaaaataaaaaagagagggaccatgcaaaaatcacaggtgata---------------------atAATTCAGTTATTTACAACTAAGGTCCCAAAAGAAAATTTTTTTAAAAAGGAA-GAAGGAGAGAGAGGGAACTTGACACCACAAAGGAATTACCGTGGATAGAATGTCTTCCAGAAA--------------------------TGACATTTTGATGGACACCCTGTTCAAATTCTCTCTCCCACATCTTCCATG
i nomLeu3.chrUn_GL397460_1  M 221 C 0
s rheMac8.chr16             30128909 459 -  77216781 acagtagattacatatacacagtgttgcatagatgggtttttaaaaa--ttctgcttaaggacaaaccagaa-----------------tgctatttatataaggtacatgtgtactaaac---aataaatactttataaggatatatacaaatgaattaaataaatttaatgtgcattgaatatacattagacagaatagcatagaggcctataggaaaagaagggagtaaagggagaagaagaagtaaattaactgatatgtaagtacat--------aaaaaataaataagagagagaccatgccaaaatcacagatgata---------------------ataattcaatcatttataactgaggtcccaaaagaaTATTTTTTAAAAAAG----GAAGGAGAGAGAGGGAACTTGACAGCAGAAAGGAATTACCATGGATAGAATGTCTTCCAGAAA--------------------------TGACATTTTGATGGACACCCTGTTCAAATTCTCTCTCCCACATCTTCCATG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28041762 459 -  80997621 acagtagattacatatacacagtgttgcatagatgggtttttaaaaa--ttctgcttaaggacaaaccagaa-----------------tgctatttatataaggtacatgtgtactaaac---aataaatactttataaggatatatacaaatgaattaaataaatttaatgtgcattgaatatacattagacagaatagcatagaggcctataggaaaagaagggagtaaagggagaagaagaagtaaattaactgatatgtaagtacat--------aaaaaataaataagagagagaccatgccaaaatcacagatgata---------------------atAATTCACTTATTTATAACTGAGGTCCCAAAAGAATATTTTTTAAAAAAG----GAAGGAGAGAGAGGGAACTTGACAGCAGAAAGGAATTACCATGGATAGAATGTCTTCCAGAAA--------------------------TGACATTTTGATGGACACCCTGTTCAAATTCTCTCTCCCACATCTTCCATG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2098364 459 +  10377808 acagtagattacatatacacagtgttgcatagatgggtttttaaaaa--ttctgcttaaggacaaaccagaa-----------------tgctatttatataaagtacatgtgtactaaac---aataaatactttataaggatatatacaaatgaattaaataaatttaatgtgcattgaatatacattagacagaatagcatagaggcctataggaaaagaagggagtaaagggagaagaagaagtaaattaactgatatgtaagtacat--------aaaaaataaataagagagagaccatgccaaaatcacagatgata---------------------atAATTCAATTATTTATAACTGAGGTCCCAAAAGAATATTTTTTAAAAAAG----GAAGGAGAGAGAGGGAACTTGACAGCAGAAAGGAATTACCATGGATAGAATGTCTTCCAGAAA--------------------------TGACATTTTGATGGACACCCTGTTCAAATTCTCTCTCCCACATCTTCCATG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1983739 459 -   8458610 acagtagattacatatacacagtgttgcatagatggatttttaaaaa--ttctgcttaaggacaaaccagaa-----------------tgctatttatataaagtacatgtgtactaaaa---aataaatactttataaggatatatacaaatgaattaaataaatttaatgtgcattgaatatacattagacagaatagcatagaggcctataggaaaagaagggagtaaagggagaagaagaagtaaattaactgatatataagtacat--------aaaaaataaataagagagagaccatgccaaaatcacagatgata---------------------atAATTCAATTATTTATAACTGAGGTCCCAAAAGAATATTTTTTAAAAAAG----GAAGGAGAGAGAGGGAACTTGACAGCAGAAAGGAATTACTGTGGATAGAATGTCTTCCAGAAA--------------------------TGACATTTTGATGGACACCCTGTTCAAATTCTCTCTCCCACATCTTCCATG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64928053 467 +  75148670 acagtagattacatatacacagtgttgcatagttgggtttttaaaaa--ttctgcttaaggacaaaccagaa-----------------tgctatttatataaagtacatgtgtactaaac---aataaatactttataaggatatatacaaatgaattaaataaatttaatgtgcattgaatatacattagacagaatagcatagaggcctataggaaaagaagggagtaaagggagaagaagaagtaaattaactgatatataagtacataaaaaataaaaaaataaataagagggagaccatgccaaaatcacagatgata---------------------atAATTCAATTATTTATAACTGAGGTCCCAAAAGAATATTTTTTAAAAAAG----GAAGGAGAGAGAGGGAACTTGACAGCAGAAAGGAATTACCGTGGATAGAATGTCTTCCAGAAA--------------------------TGACATTTTGATGGACACCCTGTTCAAATTCTCTCTCCCACATCTTCCATG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2168018 451 +   4244037 acagtagattacatatacacagtgttgcatagatggatttttaaaaa--ttctgcttaaggacaaaccagaa-----------------tgctatttatataaagtacatgtgtactaaaa---aataaatactttataaggatatatacaaatgaattaaataaatttaatgtgcattgaatatacattagacagaatagcatagaggcctataggaaaagaagggagtaaagggagaagaagaagtaagttaactgatatataagtacat--------aaaaaataaataagagagagaccatgccaaaatcaca---gata---------------------ataatTCAATTATTTATGACTGAGGTCCCAAAATAATATTTTTTAAAAAAG----GAAGGAGAGAGAGGGAACTTGACAGCAGAAAGGAATTACTGTGGATAGAATGTCTTCCAGAAA--------------------------TGACATTTT-----CCACCCTGTTCAAATTCTCCCTCCCACATCTTCCATG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2191036 460 +   4569836 acagtagattacgtatacacagtgttgcatagatggatttctaaaga--ttctgcttaaggacaaaccagaa-----------------tgctatttatataaagtacatgtgtactaaaa---aataaatactttataaggatatatacaaatgaattaaataaatttaatatgcattgaatatatgttagacagaatagcatagaggtctataggaaaagaagggagtaaagggagaagaagaagtaaattaactgatatataagtacat-------aaaaaaataaataagagagagactatgccaaaatcacagatgata---------------------ataattcaattatttacacctgaggtcccaaaagaaTGTTTTTTAAAAAAG----GAAGGAGAGAGAGGGAACTTGAGAGCAGAAAGGAATTACCATAGATAGAATGTCTTCCAGAAA--------------------------TGACATTTTGATGGACACCCTGTTCAAATTCTCTCTCCCACATCTTCCATG
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22844454 484 +  28711273 atggaagattgtatatacacatagctgcacagacaaatcttaaaaaaatttctgcttagtgacaaagcagaatgagatatactgggcactgttatttatgtaaaggacacatgtgctaaacaacaatgaacactttatgagaacacacgcaaa------------------------------------taaacagagtag---aagagctgatggaagagaatgggggca---tgagaacaggaattgaattcgttgatata-aaatacat---------aaaaataggtgagggagggcccttgaaatgaccaaagatgatcatgtaccataaaataaggagtatgactgacttattggcaactgaggtccagaaagaaaactaaaaaaAAAAAAAAGGAAGAGGAGAGAGGGACCTTGACATCATAAAGG----TCCATGTATGGAGTGTCTTCCAGAAAGAAGACACTTTCTGTTGAAGAGCCTTCAACTTTCTGTTGAAGAGCCTAATCAAATTCCCTCTCCCACATCTTCCACG
i otoGar3.GL873537          C 0 C 0
e mm10.chr11                22105238 5401 - 122082543 I
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325  86 +   1920343 I
e canFam3.chr9              21457664 4882 +  61074082 I
e dasNov3.JH570468            462571 648 -    852752 I
e saiBol1.JH378271           1853173  96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e panPan2.chr17             16233418   0 +  83442489 C
e panTro5.chr17             16328533   0 +  83181570 C

a score=915331.000000
s hg38.chr17_JH159148v1_alt     9737 217 +     88070 GAGATTTCCATCATGCTAGAGGAAGGATATGGCTCTGGGAAGCA-GATGCACCTCATCTCAT-ATTGCATAGACTTTTCAAGAATGCTTCTTAC-----AAGAGGATGCAGACATTGTTT--AGGAGTTATATTAACTTTAATAATTTGTTGATTG---ATACCAGGATTCTCAAGACACCTGAAACTTCAAATTTCATTTTATAATAG-----TTTTTTTTTT--ACCCA------TCTAC------------
s gorGor5.CYUI01015385v1     4072424 220 +   4267968 GAGATTTCCGTCATGCTAGAGGAAGGATATGGCTCTGGGAAGCA-GATGCACCTCATCTCAT-ATTGCATAGACTTTTCAAGAATGCTTCTTAC-----CAGAGGATGTGGACATTGTTT-AAGGAGTTATATTAACTTTAATAATTCGTTTATTG---ATACCAGGATTCTCAAGACACCTGAAACTTCAAATTTCATTTCATAATAG-----TTTTTTTTTTTGACCCA------TCTAT------------
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2052881 223 -   2193130 GAGATTTCCGTCATGCTAGAGGAAGATTATGGCTCTGGGAAGCA-GATGCACCTCATTTCAT-ATTGCATAGACTTTTCAACAATGTTTCTTAC-----AAAAAGATGCAGACATTGTTT-AAGGAGTTATATTAACTTTAATAATTCATTTATTG---ACACCAGGATTCTCGAGACACCTGAAACTTCAAATTTCATCTTATAATAG-----TTTTTTTGG---ACCCATCTAAGTCTAT------------
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30129368 228 -  77216781 GAGATTTCCATCATGCTAGAGGAAGGATATGGCTCTGGGAAGCA-GAGGCACCTCATCTCAC-ATTGCACAGACTTTTCAACAATGTTTCTTAC-----AAGAGGATGCAGACATTGTTT-AAGGAGTTGTATTAACTTTAGTAATTTGTTTATTG---ATACCAGGATTCTCAAGATACCTGAAACTTCGAATTTCATTTTATAATAG---TTTTTTTTTTTCTGATCCATCTAAGTCTAT------------
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28042221 228 -  80997621 GAGATTTCCATCATGCTAGAGGAAGGATATGGCTCTGGGAAGCA-GAGGCACCTCATCTCAC-ATTGCACAGACTTTTCAACAATGTTTCTTAC-----AAGAGGATGCAGACATTGTTT-AAGGAGTTGTATTAACTTTAATAATTTGTTTATTG---ATACCAGGATTCTCAAGATACCTGAAACTTCGAATTTCATTTTATAATAG---TTTTTTTTTTTCTGATCCATCTAAGTCTAT------------
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2098823 231 +  10377808 GAGATTTCCATCATGCTAGAGGAAGGATATGGCTCTGGGAAGCA-GAGGCACCTCATCTCAC-ATTGCACAGACTTTTCAACAATGTTTCTTAC-----AAGAGGATGCAGACATTGTTT-AAGGAGTTGTATTAACTTTAATAATTTGTTTATTG---ATACCAGGATTCTCAAGATACCTGAAACTTCGAATTTCATTTTATAATAGTTTTTTTTTTTTTTCTGATCCATCTAAGTCTAT------------
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1984198 229 -   8458610 GAGATTTCCATCATGCTAGAGGAAGGATATGGCTCTGGGAAGCA-GAGGCACCTCATCTCAC-ATTGCACAGACTTTTCAACAATGTTTCTTAC-----AAGAGGATGCAGACATTGTTT-AAGGAGTTATATTAACTTTAATAATTTGTTTATTG---ATACCAGGATACTCAAGATACCTGAAACTTCGAATTTCATTTTATAATAG--TTTTTTTTTTTCCTGATCCATCTAAGTCTAT------------
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64928520 227 +  75148670 GAGATTTCCATCATGCTAGAGGAAGGATATGGCTCTGGGAAGCA-GAGGCACCTCATCTCAC-ATTGCACAGACTTTTCAACAATGTTTCTTAC-----AAGAGGATGCAGACATTGTTT-AAGGAGTTACATTAACTTCAATAATTTGTTTATTG---ATACCAGGATTCTCAAGACACCTGAAACTTCGAATTTCATCTTATAATAG----TTTTTTTTTCCTGACCCATCTAAGTCTGT------------
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2168469 227 +   4244037 GAGATTTCCATCATGCTAGAGGAAGGATATGGCTCTGGGAAGCA-GAGGCACCTCATCTCAC-ATTGCACAGACTTTTCAAGAATGTTTCTTAC-----AAGAGGATGCAGACATTGTTT-AAGGAGTTATATTAACTTTAATAATTTGTTTATTG---ATACCAGGATTCTCAAGACACCTGAAACTTCAAATTTCATCTTATAATAG----TTTTTTTTTCCTGACCCATCTAAGTCTGT------------
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2191496 218 +   4569836 GAGATTTCCATCATGCTAGAGGAAGGATATGGCTCTGGGAAGCA-GAGGTACCTCGTCTCAC-GTTGCACAGAC--------AATGTTTCTTAC-----AAGAAGATGCAGACATTATTT-AAGGAGTTATATTAACTTTAATAATTTATTTATTG---ATACCAGGATTCTCAAGACACCTGAAACTTCGAATTTCATTTTATAATAG-----TTTTTTTTTCTGACCCATCTAAGTCTAT------------
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22844938 220 +  28711273 GAGAGTTCAGTCATGCTAGAGGGAGAATGAGGTCCTGGGAGGCAGGATACATGTGGCCTCATGACTGCAAGGAATTTTCAACAGTGTTTCTCACGGTATAAGAGGACGCAGGCACTGTTTAAAGGAGTTATA--AATCTC--TACTTTATTGACTG---ATGCCAGATTACTCTGCATACCTAGAATTACAAATT-----TTGTAACAG----------TATTTTGACCCATCTAAGTCTAT------------
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22110639 222 - 122082543 GAGACATCAATCTTGCAGGAGAAGGGCTG-GGATCTTGGATGCAGGACGCCTCTTACTCTCT-ACTGCTGGAGATGTTCTATAATGTTCCTTAT----------GTTACAG----CATTT-CAGGGGATGGTTCATCTCCTTCAACATATTCATTAGCCATACTAGA--TGCCAGCATGCCTGAGTTTTCAAATTTCATCTTGCAATAT------------TTTCGACCTA-CCAAGTTTATTCTGATAACTAC
i mm10.chr11                I 5401 I 253
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325  86 +   1920343 I
e canFam3.chr9              21457664 4882 +  61074082 I
e dasNov3.JH570468            462571 648 -    852752 I
e saiBol1.JH378271           1853173  96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e panPan2.chr17             16233418   0 +  83442489 C
e panTro5.chr17             16328533   0 +  83181570 C

a score=1607100.000000
s hg38.chr17_JH159148v1_alt     9954 345 +     88070 CTCATAGTTTTTGTTGTCCCAATGACAGATTTCTCAGTTTTATAGGCAAGTGTGTTTACCGGCCATCTGCCAACATGCAAACTTCACATTCTAAACATGTCAAATGTGAAACATGAGTTGAGAAGCTTTGTG---------------TCTTTAACCATGC-TTGGCAACAGTTTAAATGACATAGCATGTATTTTCTCCTTTTAAGTTTgctagggcttgtccataaaacatctgaatctcctctaataagcaatgttctgccaagcctgaacatg----t-----aactaaatctttctttacacttatttTCAGGGCA-GGGAACAATTTTAAAAATACAAGAAAATTTTGAGA------AAAATATTACAAGAA
s gorGor5.CYUI01015385v1     4072644 342 +   4267968 CTCATAGTTTTTGTTGTCCCAATGACAGATTTCTCAGTTTTATAGGCAAATATGTTTACCGGCCATCTGCCAACATGCAAACTTCACATTCTAAACATGTCAAATGTGAAACATGAGTTGAGAAGCTTTGTG---------------TCTTTAACCATGC-TTGGCAACAGTTTAAATGACATAGCATGTATTTTCTCC-TTTAAGTTTGCTAGGGCTTGTCCATAAAACATCTGAATCTCCTCTAATA--CAATGTTCTGCCAAGCCTGAACATG----T-----AACTAAATCTTTCTTTACACTTATGTTCAGGGCA-GGGAACAATTTTAAAAATACAAGAAAATTTTGAGA------AAAATATTACAAGAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2053104 345 -   2193130 CTCATAGTTTTTGTTGCTCCAGTGACAGATTTCTCAGTTTTATAGGCAAATGTGTTTACTGGCCATCTGCCAGCATGCAAACTTCACATTCTAAACATGTCAAATGTGAAACATGGGTTGGGAAGCTTTGTG---------------TCTTTAACCACGCTTTGGCAACAGTTTAAATGACATAGCATGTATTTTCTCCTTTTAAGTTTGCTAGATCTTGTCCATAAAACATCTGAATCT-CTCTAATAAGCAATGTTCTGCCAAGCCTGAACACG----C-----AACTAAATCTTTCTTTACACTTATGTTCAGGGAG-GGGAACAattttaaaaatacaagaaaattttgaga------aaaatattacaagaa
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30129596 346 -  77216781 CTCACAGTTTTTGTTGTTCCAATGACAGATTTCTCAGTCTTATAGGTGAATGTGTTTACTGGCCGTCTGCCAACATGCAAACTTCACATTCTAAACATGTCAGATGTGAAACATGGGTTGAGAAGCTTTGTA---------------TCTTTAACCACGC-TTGGCAACAGTTTAAATGACATAGCATTTATTTTCTCCTTTTAAGTTTGCTAGAGCTTGTCCATAAAACATCTGAATCCCCTTTCATAAGCAATGTTCTGCCAAGCCTGAACATG----T-----AACTAAATCTTTCTTTACCCTTATGTTCAGGGCAGGGGAACAattttaaaaacacaagaaaattttgaga------aaaatattacaagaa
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28042449 346 -  80997621 CTCACAGTTTTTGTTGTTCCAATGACAGATTTCTCAGTCTTATAGGTGAATGTGTTTACTGGCCGTCTGCCAACATGCAAACTTCACATTCTAAACATGTCAGATGTGAAACATGGGTTGAGAAGCTTTGTA---------------TCTTTAACCACGC-TTGGCAACAGTTTAAATGACATAGCATTTATTTTCTCCTTTTAAGTTTGCTAGAGCTTGTCCATAAAACATCTGAATCCCCTTTCATAAGCAATGTTCTGCCAAGCCTGAACATG----T-----AACTAAATCTTTCTTTACCCTTATGTTCAGGGCAGGGGAACAattttaaaaacacaagaaaattttgaga------aaaatattacaagaa
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2099054 346 +  10377808 CTCACAGTTTTTGTTGTTCCAATGACAGATTTCTCAGTCTTATAGGTGAATGTGTTTACTGGCCGTCTGCCAACATGCAAACTTCACATTCTAAACATGTCAGATGTGAAACATGGGTTGAGAAGCTTTGTA---------------TCTTTAACCACGC-TTGGCAACAGTTTAAATGACATAGCATTTATTTTCTCCTTTTAAGTTTGCTAGAGCTtgtccataaaacatctgaatcccctttaataagcaatgttctgccaagcctgaacatg----t-----aactaaatctttctttacccttatgttcagGGCAGGGGAACAattttaaaaacacaagaaaattttgaga------aaaatattacaagaa
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1984427 344 -   8458610 CTCACAGTTTTTGTTGTTCCAGTGACAGATTTCTCAGTCTTATAGGTGAATGTGTTTACTGGCCGTCTGCCAACATGCAAACTTCACATTCTAAACATGTCAGATGTGAAACATGGGTTGAGAAGCTTTGTA---------------TCTTTAACCACGC-TTGGCAACAGTTTAAATGACATAGCATTTAGTTTCTCCTTTTAAGTTTGCTAGAGCTTGTCCATAAAACATCTGAATCCCCTTTAATAAGCAATGTTCTGCCAAGCCTGAACATG----T-----AACTAAATCTTTCTTTACCCTTATGTTCAGGGCAGGGGAACAattttaaag--acaggaaaattttgaga------aaaatattacaagaa
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64928747 346 +  75148670 ATCACAGTTTTTGTTGTTCCAATGACAGATTTCTCAGTCTTATAGGTGAATGTGTTTACTGGCCATCTGCCAACATGCAAACTTCACATTCTAAACATGTCAGATGTGAAACATGGGTTGAGAAGCTTTGTA---------------TCTTTAACCACGC-TTGGCAACAGTTTAAATGACATAGCATTTATTTTCTCCTTTTAAGTTTGCTAGAGCTTGTCCATAAAACATCTGAATCCCCTTTAATAAGCAATGTTCTGCCAAGCCTGAACATG----T-----AACTAAATCTTTCTTTACCCTTATGTTCAGGGCAGGGGAACAattttaaaaacacaagaaaattttgaga------aaaatattacaagaa
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2168696 346 +   4244037 CTCACAGTTTTTGTTGTTCCAATGACAGATTTCTCAATCTTATAGGTGAATGTGTTTACTGGCCATCTGCCAACATGCAAACTTCACATTCTAAACATGTCAGATGTGAAATATGGGTTGAGAAGCTTTGTA---------------TCTTTAACCACGC-TTGGCAACAGTTTAAATGACATAGCATTTATTTTCTCCTTTTAAGTTTGCTAGAGCTTGTCCATAAAACATCTGAATCCCCTTTAATAAGCAATGTTCTGCCAAGCCTGAACATG----T-----AACTAAATCTTTCTTTACCCTTATGTTCAGGGCAGGGGAACAattttaaaaacacaagaaaattttgaga------aaaatattacaagaa
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2191714 346 +   4569836 CTCACAGTTTTTTTTGTTCCAATGGCAGATTTCTCAGTCTTATAGGTGAATGTGGTTACTGGCCATCCGCCAACATGCAAACTTCACATTCTAAACAAGTCAGATGTGAAACATGGGTTGAGAAGCTTTGTA---------------TCTTTAACTACGC-TTGGCAACAGTTTAAATGACATAGCATTTATTTTCTCCTTTTAAGTTTGCTAGAGTTTGTCCATAAAACATCTGAATCCCCTTTAATAAGCAATGTTCTGCCAAGCCTGAACATG----T-----AGCTAAATGTTTCTTTACCCTTATGTTCAGGGCAGGGgaattattttaaaaacacaagaaaattttgaga------aaaatattacaagaa
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22845158 331 +  28711273 GTT-CCTTTTTTGTTGTTCAAACTACGGATGTCTAAGTTTTGTAGGCAAATGTTTTTATTGGCCGTCTGCCCACA-GCAAACTTC----CCTGAACATGTCAAGTGCAAAACGTGGGCAG-GAAGCTCTGTA---------------TCTTTTCTCATGC-TTGGCAACCATTTAAATAACATATCATTAATTTGTTCCTTTTAGGTTTGCTTGAACTTGT-CATAAAACATCTGAACCTCCTCT-ATACAAAATATTCTGCCAAGCCTGAACACGCGTCT-----TACTAAATCTTTACTTAGACTTATGTTCAGGGCAGGAGAACAATTTTCAAA---------AGTTTTGAG-------AAAATACTACAAACA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22111114 349 - 122082543 CTCATTCTTTTCATTGTCTCAGTTATGGGTCTCTTAAT-----------------TCATTGCTCCTCTGCCAGCACACTAACCGTAGGCTCCAAACACAATGGGTATAAGAGGTGTGTTGGGAAGATTTGTGATTTGTTGTTTTCTTTTTTAAATCATGG-TTGGCGTCAGGTCAGATAATGTAGCATTTATTTGATTCTTGTAGGGTTGCTAGAACTTGTCCATAAAACATCTGAACCTCCTGTTATAAACAGTGTTC-----AGCCTGAACATG----CTCATGAGAAAAATCCCTGTTTATACTTATGTCTGGAAGAGAGAAACAATTTTCAAAATACAAGAAGAGCATGTCAGTGCCCAACAT-CCACAATAG
i mm10.chr11                I 253 I 109
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325  86 +   1920343 I
e canFam3.chr9              21457664 4882 +  61074082 I
e dasNov3.JH570468            462571 648 -    852752 I
e saiBol1.JH378271           1853173  96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e panPan2.chr17             16233418   0 +  83442489 C
e panTro5.chr17             16328533   0 +  83181570 C

a score=1190779.000000
s hg38.chr17_JH159148v1_alt    10299 291 +     88070 ------------CCTGCCTCTCcaaattggcat-----------tttcttacttctgctttggatcttta-aaaaat-taattgaaatgaaacattatgcttgtaaagttgaagtcccc----------------tcttc-agtcttatttcccttttttcatctcagatataacttc--tatcataattttattgtatattctcccagtcactgttaatttatataaaa-atata---aacatcttatatttataaagtatttaaacaagacctagtatgaaggattgcagatttaagaatttatgtatgtgatgtaaaattatgcaa-tttacttttt
s gorGor5.CYUI01015385v1     4072986 291 +   4267968 ------------CCTGCCTCCCcaaattggcat-----------tttcttacttctgctttggatcttta-aaaaat-taattgaaatgaaacattatgtttgtaaagttgaagttccc----------------tcttc-agtctcatttcccttttttcatctcggatataacttc--tgtcataattttattgtatattctcccagtcactgttaatttatataaaa-atata---aacatcttatatttatagagtatttaaacaagatctagtatgaaggattgcagatttaagaatttatgtatgtgatgtaaaattatgcaa-tttacttttt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2053449 289 -   2193130 ------------cctgcctccccaaattggcat-----------tttcttacttctgctttgaatcttta-taaaat-taattgaaatgaaacattatacttgtaaagttgaagtcccc----------------tcttc-agtctcatttcccttttttcatctcggatataacttc--tgtcataattttattgtatattctcccagtcac--ttgatttatataaaa-atata---aacatcttatatttataaagtatttaaacaagatctaatatgaaggattgcagatttaagaattttcatatgtgatgtaaaattatacaa-tttacttttt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30129942 302 -  77216781 ------------cctgcctc-ccagattggcat-----------tttcttacttctgctttggatcttt--aaatat-taattgaaatgaaacattagacttgtaaagttgaagtcccctttgtaccc------ctcttc-agtctcatttcccttttttcatctcagatatcacttc--tatcataactttattgtatatcctcccagtaactgttaatttatataaaa-atataaacaacatctcgcatttataaagtatttaaacaagatcaaatatgaaggattgcagacttaagaatttacatatgagatgtaaaattatgcaa-tttacttttt
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28042795 302 -  80997621 ------------cctgcctc-ccagattggcat-----------tttcttacttctgctttggatcttt--aaatat-taattgaaatgaaacattagacttgtaaagttgaagtcccctttgtaccc------ctcttc-agtctcatttcccttttttcatctcagatatcacttc--tatcataactttattgtatatcctcccagtaactgttaatttatataaaa-atataaacaacatctcgcatttataaagtatttaaacaagatcaaatatgaaggattgcagacttaagaatttacatatgagatgtaaaattatgcaa-tttacttttt
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2099400 301 +  10377808 ------------cctgcctc-ccagattggcat-----------tttcttacttctgctttggatcttt--aaatat-taattgaaatgaaacattagacttgtaaagttgaagtcccctttgtaccc------ctcttc-agtctcatttcccttttttcatctcagatatcacttc--tatcataactttattgtatatcctcccagtcactgttaattgatataaaa-atataaacaacatctcgtatttataaagtatttaaacaagaccaaatatgaaggattgcagatttaagaatttacatatgagatgtaaaattatgcaa-tttac-tttt
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1984771 302 -   8458610 ------------cctgcctc-ccagattggcat-----------tttcttacttctgctttggatcttt--aaatat-taattgaaatgaaacattagacttgtaaagttgaagtcccccttgtaccc------ctcttc-agcctcatttcccttttttcatctcagatatcacttc--tatcgtaactttattgtatatcctcccagtaactgttaatttatataaaa-atataaacaacatctcgtatttataaagtatttaaacaagaccaaatatgaaggattgcagacttaagaatttacatatgagatgtaaaattatgcaa-tttacttttt
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64929093 303 +  75148670 ------------cctgcctc-ccagattggcat-----------tttcttacttctgctttggatcttta-aaaaat-taattgaaatgaaacattagacttgtaaagttgaagtcccctttgtaccc------ctcttc-agcctcatttcccttttttcatctcgaatatcacttc--tatcataactttattgtatatcctccctgtcactgttaatttataTAAAA-ATATAAACAACATCTCGCATTTATAAAGTATTTAAAGAAGATCAAATATGAAGGATTGCAGACTTAAGAATTTACATATGAGATGTAAAATTATGCAA-TTTACttttt
i chlSab2.chr16             C 0 I 1467
s manLeu1.NW_012106252v1     2169042 301 +   4244037 ------------cttgcctc-ccagattggcat-----------tttcttacttctgctttggatcttta-aaaaat-taattgaaatgaaacattagacttgtaaagttgaagtcccctttgtaccc------ctcttc-agcctcatttcccttttttcatctcgaatatcacttc--tatcataactttattgtgtatcctcc--gtcactgttaatttataTAAAA-ATATAAACAACATTTCGCATTTATAAAGTATTTAAACAAGATCAAATATGAAGGATTGCAGACTTAAGAATTTACATATGAGATGTAAAATTATGCAA-TTTACTTTTT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2192060 301 +   4569836 ------------cctgcctc-ccagattggcat-----------tttcttacttctgctttggatcttta-aaaaat-taattgaaatgaaacattagacttgtaaagttgaagtcccctttgtaccc------ttcttc-agcctcatttcccttttttcatctcggatatcacttc--tatcataactttattgtgtatcctcccagtcactgttaatttatataaaa-atata---aacatctcgtatttataaagtatttaaacaagatcaaatatgaaggattgtagatttaagaatttacatgtgagatgtaaaattatgcaattttacttttt
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22845489 268 +  28711273 ------------CCAAT----CAGAATGGACAT-----------TTTCTTATATCTGCTTCGGATCTTA---------TAATTGAAACAAAACATTA--TTCATAAAGTT---ATCCCATTTGTACT----------------TCCCAAGTCCTTTTTCCCGTCTTAAATACAACCTATGTATCATGGTCTTATT-------------GTCACTGTTAATTTATGTAAAATACATAAATAATATATGATATATAGAAAGTATGTAAATGATACCTAGTATTAGAGCCTGAATATTTAAGAATTTACCTGTATAATGTCAAATTATGTAA-TTTATTTTT-
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22111572 329 - 122082543 cctccctccctccctccctc-ctttctttccttccttccCTTTCTTTTTAACATCTGCTTTGGATCTTTACAGAAATGTAACTGAAATAAAATGTTG--TCAGTGGTGGTGATGTCTCCTTTGTATCCTCTCTGCTCTTCTCATGTTAGCTGGCTTCTTTC--CTCAGATCCAACCCC--TCCCAAGATTTCATTGTGCATAGTTCTTGCCACTGTT-ATTTATCCAAAT-TTGGAGACAATCTGCACTATCCATGACGTGTTTAAATAAAGTTTAGTGC-AGGGCTTACAAGCTTCAAGATTCATAGATGCCACATAATGTGTCACAT-GTTCATTTTT
i mm10.chr11                I 109 C 0
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325  86 +   1920343 I
e canFam3.chr9              21457664 4882 +  61074082 I
e dasNov3.JH570468            462571 648 -    852752 I
e saiBol1.JH378271           1853173  96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e panPan2.chr17             16233418   0 +  83442489 C
e panTro5.chr17             16328533   0 +  83181570 C

a score=139367.000000
s hg38.chr17_JH159148v1_alt    10590 34 +     88070 aaatttcattattgcttttaagaactatgcattt
s gorGor5.CYUI01015385v1     4073277 34 +   4267968 aaatttcattattgcttttaagaactatgcattt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2053738 34 -   2193130 aaatttcattattgcttttaagaactatgcattt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30130244 34 -  77216781 aaatttcattattgcttttaagaactgtgcattt
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28043097 34 -  80997621 aaatttcattattgcttttaagaactgtacattt
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2099701 34 +  10377808 aaatttcattattgcttttaagaactgtgcattt
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1985073 34 -   8458610 aaatttcattattgcttttaagaactgtgcattt
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2169343 34 +   4244037 AAATTTCATTATTGCTTTTAAGAACTGTGCATTT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2192361 34 +   4569836 aaatttcattattgcttttaagaactgcgcattt
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22845757 33 +  28711273 -AATTTCATTATTGCTTTTAAGAGATATACATTT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22111901 31 - 122082543 --GTCTC-CAATCACCTTACAGAGCTATGCATTT
i mm10.chr11                C 0 I 531
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325 86 +   1920343 I
e canFam3.chr9              21457664 4882 +  61074082 I
e dasNov3.JH570468            462571 648 -    852752 I
e saiBol1.JH378271           1853173 96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e panPan2.chr17             16233418  0 +  83442489 C
e panTro5.chr17             16328533  0 +  83181570 C

a score=1053860.000000
s hg38.chr17_JH159148v1_alt    10624 297 +     88070 tgatacatggacctgtttcattatattagttacctattgttgcat--aacaattatctcaaaacttagtggctga-aacaacaaa--gtttattatctcactgtttctgtgggttagaaaactagatgtggcttagctagatacctacag-cttggggtcttttatgagatggttggtgaggtgttggctggggctgcggtcatctcatggctcaactagagaaggattcacttccaagctcatttatgtggacactggaaggccactggttcacaccaactgttagccagagatatcagttc
s gorGor5.CYUI01015385v1     4073311 297 +   4267968 tgatacatggacctgtttcattatattagttacctattgtcgcat--aacaattatctcaaaacttagtggctga-aacaacaaa--gtttattatctcactgtttctgtgggttagaaaactagatgtggcttagctagatacctacag-cttggggtcttttatgagatggttggtgaggtattggctggggctgcggtcgtctcatggctcaactagggaaggattcacttccaagctcatttatgtggacactggaaggccactggttcacaccaactgttagccagagatatcagttc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2053772 298 -   2193130 tgatacatggacctgtttcattatattcgttacctattgttgcat--aacaattatctcaaaacttagtggccga-agcaacaaa-tgtttattatctcattgtttctgtgggttagaaaactagatgttgcttagctagatacctacag-cttggggtcttttatgagatggttggtgaggtattggctggggctgcggtcatctcatggctcaactagggaaggattcacttccaagctcatttatgtggacgctggaagcccactggttcgcaccaactgttagccagagatatcagttc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30130278 298 -  77216781 tgatacatggacctgtttcattatattagttatctattgctgcgt--aacagttatctcaaaacttagtggctga-aacaacaaa-tgtttattatctcactgtttctgtgggttagaaaactaggtgtggcttagctagatacctctag-cttggagtcttttattagatggttggtgaggtgttggctggggctgctgtcatctcatggctcaactagggaaggattcactgccaagctcatttatgtaggcactggaaggccactggtttgcaccaattgttagccagagatatcagttc
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28043131 298 -  80997621 tgatacatggacctgtttcattatattagttatctattgctgcgt--aacagttatctcaaaacttagtggctga-aacaacaaa-tgtttattatctcactgtttctgtgggttagaaaactaggtgtggcttagctagatacctctag-cttggagtcttttattagatggttggtgaggtgttggctggggctgctgtcatctcatggctcaactagggaaggattcactgccaagctcatttatgtaggcactggaaggccactggtttgcaccaattgttagccagagatatcagttc
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2099735 298 +  10377808 tgatacatggacctgtttcattatattcgttatctattgctgcat--aacagttatctcaaaacttagtggctga-aacaacaaa-tgtttattatctcactgtttctgtgggttagaaaactaggtgtggcttagctagatacctctag-cttggagtcttttattagatggttggtgaggtgttggctggggctgctgtcatctcatggctcaactagggaaggattcactgccaagctcatttatgtaggcactggaaggccactggtttgcaccaattgttagccagagatatcagttc
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1985107 298 -   8458610 tgatacatggacctgtttcattatattagttatctattgctgcgc--aacagttatctcaaaacttagtggctga-aacaacaaa-tgtttattatctcactgtttctgtgggttagaaaactaggtgtggcttagctagatacctctag-cttggagtcttttattagatggttggtgaggtgttggctggggctgctgtcatctcatggctcaactagggaaggattcactgccaagctcacttatgtaggcactggaaggccactggtttgcaccaattgttagccagagatatcagttc
i cerAty1.NW_012006043v1    C 0 I 848
s manLeu1.NW_012106252v1     2169377 298 +   4244037 TGATACATGGACCTGTTTCATtatattagttatctattgctgcat--aacagttatctcaaaacttagtggctga-aacaacaaa-tgtttattatctcactgtttctgtgggttagaaaactaggtgtggcttagctagatacctctag-cttggagtcttttattagatggttggtgaggtgttggctggggctgctgtcatctcatggctcaactagggaaggattcactgccaagctcatttatgtaggcactggaaggccactggtttgcaccaattgttagccagagatatcagttc
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2192395 287 +   4569836 tgatacatggacctgtttcattatattagttatctattgctgcgt--aacagttatatcaaaacttagtggctga-aacaacaaa-tgtttattatctcactgtttctgtgggttagaaaactaggtgtggcttagctagatacctctagacttggagtcttttatt------------aggtgttggctggggctgcggtcatctcatggctcaactagggaaggattcactgccaagctcatttatgtaggcactggaaggccactggtttgcaccaactgttagccagagatatcagttc
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22845790 289 +  28711273 TGATACTCAAATATCTTTTATtatgttagttatctatcactgcataaaaaaattacct-aaaacttagtggctgacaatgacagacccttttttatctcactgtttctgtgggttagaaatgtaggtgtggctt---------ccgttag-ctcagggtctcttgtgagatgactgttgaagttttggctggggcggaagtcacctcatgacttggctggggaaggatttacttctaagctca---atgtagccaccggcaggccactggttcttgctagctgttagccagtgatgttatgcc
i otoGar3.GL873537          C 0 C 0
e mm10.chr11                22111932 531 - 122082543 I
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325  86 +   1920343 I
e canFam3.chr9              21457664 4882 +  61074082 I
e dasNov3.JH570468            462571 648 -    852752 I
e saiBol1.JH378271           1853173  96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e panPan2.chr17             16233418   0 +  83442489 C
e panTro5.chr17             16328533   0 +  83181570 C

a score=232553.000000
s hg38.chr17_JH159148v1_alt    10921 84 +     88070 attgcctcatgggcttctccatactctggctgattgtcctcatagcacagcatctggattctcccagaggaagcgaagagaaag
s gorGor5.CYUI01015385v1     4073608 84 +   4267968 attgcctcatgggcttctccatactctggctgattgtcctcatagcacagcatctggattctcccagaggaagcgaagagaAag
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2054070 84 -   2193130 attgcctcatgggcttctccatactctgactgattgtcctcatggcacagcatctggattctcccagaggaagtgaagagaAag
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30130576 84 -  77216781 ctttcctcatgggcttctccatactctggctgattgtcctcatggcacagcatctggattctcccagaggaagccaagagaaag
i rheMac8.chr16             C 0 I 824
s macFas5.chr16             28043429 84 -  80997621 ctttcctcatgggcttctccatactctggctgattgtcctcatggcacagcatctggattctcccagaggaagccaagagaaag
i macFas5.chr16             C 0 I 823
s macNem1.NW_012014910v1     2100033 84 +  10377808 ctttcctcatgggcttctccatactctggctgattgtcctcatggcacagcatctggattctcccagaggaagccaagagaaag
i macNem1.NW_012014910v1    C 0 I 822
s manLeu1.NW_012106252v1     2169675 84 +   4244037 ctttcctcatgggcttctccatactctggctgattgtcctcatggcacagcatctggattctcccagaggaagcgaagagaaag
i manLeu1.NW_012106252v1    C 0 I 823
s colAng1.NW_012122154v1     2192682 84 +   4569836 cttgcctcatgggcttctccatactctggctgatggtcctcatggcacagcatctggattctcccagaggaagcgaagagaaag
i colAng1.NW_012122154v1    C 0 I 828
s otoGar3.GL873537          22846079 82 +  28711273 cctgctgcatgggcttctccct-ttcttactgatagtccttaggg-aaagaagctgaattctcccagagtcagtgggcagtggg
i otoGar3.GL873537          C 0 C 0
e mm10.chr11                22111932 531 - 122082543 I
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325 86 +   1920343 I
e canFam3.chr9              21457664 4882 +  61074082 I
e dasNov3.JH570468            462571 648 -    852752 I
e saiBol1.JH378271           1853173 96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405 848 -   8458610 I
e panPan2.chr17             16233418  0 +  83442489 C
e panTro5.chr17             16328533  0 +  83181570 C

a score=600.000000
s hg38.chr17_JH159148v1_alt    11005 1 +     88070 g
s gorGor5.CYUI01015385v1     4073692 1 +   4267968 g
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2054154 1 -   2193130 g
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22846161 1 +  28711273 g
i otoGar3.GL873537          C 0 I 927
e mm10.chr11                22111932 531 - 122082543 I
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325 86 +   1920343 I
e canFam3.chr9              21457664 4882 +  61074082 I
e manLeu1.NW_012106252v1     2169759 823 +   4244037 I
e dasNov3.JH570468            462571 648 -    852752 I
e saiBol1.JH378271           1853173 96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e colAng1.NW_012122154v1     2192766 828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405 848 -   8458610 I
e macNem1.NW_012014910v1     2100117 822 +  10377808 I
e macFas5.chr16             28043513 823 -  80997621 I
e rheMac8.chr16             30130660 824 -  77216781 I
e panPan2.chr17             16233418 0 +  83442489 C
e panTro5.chr17             16328533 0 +  83181570 C

a score=1047633.000000
s hg38.chr17_JH159148v1_alt    11006 4101 +     88070 [encoded data, 4164 characters]
s gorGor5.CYUI01015385v1     4073693 4100 +   4267968 [encoded data, 4164 characters]
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2054155 4054 -   2193130 [encoded data, 4164 characters]
i nomLeu3.chrUn_GL397460_1  C 0 C 0
e mm10.chr11                22111932  531 - 122082543 I
e aotNan1.NW_018502359v1     7018238  100 -   7032639 I
e cebCap1.NW_016107730v1     1904325   86 +   1920343 I
e canFam3.chr9              21457664 4882 +  61074082 I
e manLeu1.NW_012106252v1     2169759  823 +   4244037 I
e dasNov3.JH570468            462571  648 -    852752 I
e otoGar3.GL873537          22846162  927 +  28711273 I
e saiBol1.JH378271           1853173   96 +   3513951 I
e calJac3.chr5              46143832  769 - 159171411 I
e colAng1.NW_012122154v1     2192766  828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405  848 -   8458610 I
e macNem1.NW_012014910v1     2100117  822 +  10377808 I
e macFas5.chr16             28043513  823 -  80997621 I
e rheMac8.chr16             30130660  824 -  77216781 I
e panPan2.chr17             16233418    0 +  83442489 C
e panTro5.chr17             16328533    0 +  83181570 C

a score=352391.000000
s hg38.chr17_JH159148v1_alt    15107 1074 +     88070 GATGCTCTGAGCATCTGCAGAAAAGACTGTCCAGTGAGTCTGCCCCAAACTGTCTGCCTATCTGCCCCTCTAGCCCATCTCTTATCCAGGGCCTCAGTTTGAATTTAGGATCAAGTTCTTATTATTATTGGATAAAGTAAGACAGTGACATTAGAATAAAACATGTCTTGGCAAATTGTCACTGAATTGaatccacctttctgcaatgttttcataagctacgatgagagtccttttgaaatgctctgctgaaatccagattcattttgtactgaatttcgtttatcAATG-AATCTAGCAAAAATAAAA-----AGTTATTTTACATGGgttggtctaagtggtaccatgttttatttttt----ggcattcacaaaagatcatctgaaca----------atttattctaaagtctttttctaagat--aagatcaagctgattggtgtatggtttgcagaaacttgaaaaattgggatggtctttgcttgtctc-aacacgttgagtagctcttgttctctaacattcctcaaatatcaatatgtggtttattttcagtctctaactgctctgggacctaatgtgcacagcatgcagtgacatgaatttatttagagaatctaagCATTTGCAAAATTGATTTGTCCTTATCAATGTTTAGTCATTTTTCCAATTCAATTATTTCCTATTGTCTGAAAAGATAGACACCAAATAAGAGTGTTTCTAGCATAACCTTCACAGTCTTTGTGCCATACGCCACCGGGAGATCTCAGATCTTCTCTCAATCCCTGCTCTCAGCCTGAAATAAGGAGGCCAGGTTCCTTTTATAAGCCCAGATTTTCCTTGCCAGATACTGACATATTTACAGTTCATGGATCATGAATTGGATGAAGGGTGGATACAAATGCATC------ATAC-AAAAAA-------------TGCAACATCACACTGAGGAGCTTACTTCATATTAAAC---TTCTTTTAGTGC--TTATAGCTCTCTTTATTCAGATCAAAAGGAATTAAAA-----------------TCTGTCGCTCTTGTTG------------------------------CAAGTTTTCTCATTTCAGTTCAGAAGGAAACATTTCAATTTTTCTTTTGTTATAAAAGTAACCTGTGCTTG
s gorGor5.CYUI01015385v1     4077793 1078 +   4267968 GATGCTCTGAGTATCTGCAGAAAAGACTGTCCAGTGAGTCTGCCCCAAACCGTCTGCCTATCTGCCCCTCTAGCCCATCTCTTATCCAGGGCCTCAGTTTGAATTTAGGATCAAGTTCTTATTATTATTGGATAAAGTAAGACGGTGACATTAGAATAAAACATGTCTTGGCAAATTGTCACTGAattgaatccacctttctgcaatcttttcataagctacgatgagagtccttttgaaatgctctgctgaaatccagattcattttgtactgaatttcgtttatcaatg-aatctagcaaaaataaaa-----agttattttacatgggttggtctaagtggtaccatgttttatttttt----ggcattcacaaaagatcatctgaaca----------atttattctaaagtctttttataaggt--aagatcaagctgattggtgtatggtttgcagaaacttgaaaaattgggatggtcttttcttgtctc-aacacgttgagtagctcttgttctctaacattcctcaaatatcaatatgtggtttattttcagtctctaactgctctgggacctaatgtgcacagcatgcagtgacatgaatttatttagagaatctaagCATTTGCAAAATTGATTTGTCCTTATCAATGTTTAGTCATTTTTCCAATTCAATTATTTCCTATTGTCTGAAAAGATAGACACCAAATAAGAGTGTTTCTAGCATAACCTTCACAGTCTTTGTGCCATACGCCACCGGGAGATATCAGATCTTCTCTCAATCCCTGCTCTCAGCCTGAAATAAGGAGGCCAGGTTCCTTTTATAAGCCCAGATTTTCCTTGCCAGATACTGACATATTTACAGTTCATGGATCATGAATTGGATGAAGGGTGGATACAAATGCATC------ATAT-AAAAAA-------------TGCAGCATCACACTGAGGAGCTTACTTCATATTAAAC---TTCTTTTAGTGC--TTATAGCTCTCTTTATTCAGATCAAAAGGAATTAAAATC-------------TCTCTGTCGCTCTTGTTG------------------------------CAAGTTTTCTTATTTCAGTTCAGAAGGAAACATTTCAATTTTTCTTTTGCTATAAAAGTAACCTGTGCTTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2058209 1071 -   2193130 GATGCTCTGAGTAGCTGCAGAAAAGACTGTCCAGTGAGTCTGCCCCAAACTGTCTGCCTATCTGCCCCTCTAGCCCATCTCTTATCCAGGGTCTCAGTTTGAATTTAGGATCAAGTGCTTGTTATTATTGGAAAAAGTAAGACGGTGACATTAGAATAAAACATGTCTTGGCAAATTGTCCCTGAatcgaatccacatttccgcaatcttttcataagctatgatgagagtccttttgaaatgctctgctgaaatccagattcattttgtactgaatttcgtttatcaatg-aatctagcaaaaataaaa-----agttattttacatgggttggtctaagtggtaccatgttttatttttt----ggcattcacaaaagatcatctgaaca----------atttattctaaagtctttttctaagat--aagatcaagctgattggtgtatggtttgcagaaacttgaaaaatcgggatggtctttgcttgtctc-agcacggtgagtagctcttgttctccaagattcctcaaatatcaatatgtggtttatttccagtctctaactgctctgggacctaatgtgcgcagcatgcagtgatatgaatttatttagagaatctaagCATTTGCAAAATTGATTTGTCCTTATCAATGTTTAGTCATTTTTCCAATTCAATTATTTCCTATTGTCTGAAAAAATAGACACCAAATAAAAGTATTTCTAGCATAAACTTCACTTTCTTTGTGCCATACGCCACTGGGAGATCTCAGA---TCTCTCAATCCCTGCTCTCAGCCTGAAATAAGGAGGCCAGTTTCCTTTTATAAGCCCGCATTTTCCTTGCCAGATACTGACATGTTTACAGTTCATGGATCGTGAATTGGATGAAGGGTGGATACAAATGCATC------ATATAAAAAAA-------------TGCAGCATCACACTGAGGAGCTTACTTCATATTAAAC---TTTTTTTAGTGC--TTATAGCTCTCTTTATTCAGATCAAAAGGAATTAAAC---------------TCTCTGTCACTCTTGT---------------------------------AAGTTTTCTCATTTTAGTTCAGAAGGAAACATTTCAATTTTTCTTTTGTTATAAAAGTAACCTGTGCTTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s mm10.chr11                22112463 1077 - 122082543 GATGCTCTGAAATCCT--ATACCGGGCAGCCCTGCACCTCTGTGGCAGGCTGCCTGCCTAACTAACCCTCTGACACATTTCCTACCCAGGATTTCAGCTTGAATTTGGGCTTAAATCCTCATTAGCACTGGGTGAAGTAAGACCCTACTA--ACAATGAAACAGGCCTGGGCAAACTGTCAATGGATTCTATCCACACT---------TTTTCCTAAGGCATTAGGAGAAGTCTTTC-AACCACCCTGCAG-AATCCAGGATCATTTC-CACTGAGCTCTGCCTATCGACATAATCTAGCAAAAACAAAACATTGAATGGTTTGAAATGACTTGGTCTAATTGGTGGTATGTTTTGTCTTCTCCAAAACAACCACAAAGAGTCCTTTGAATAAGCCCTCAGGATTTTTTT-----TCTTTTTCTTATTTGAGAGATCGAGCTTA--GAGGTACAGCCTGCAGGAACTTGAACACCTGGTGTAGTGTTTGCTTGTCTTAAACACACCAAGCATCTTTGGTTTTCTAAGGTTTCTCAAAGACCAGCCTGTGG--CACTTCCAGACTCTAACTGCTCCAGATGTAAACATGTGGAGTGT-----------------------GATTCTTTGTGTCTGT-GAGCTGGTTAGTCTTTAG--------------------AACACAGTCTTTCCCCGTCATCTGAAAAGACTGAAGCCATGTCAGTAAGTCTCCAGTCCAGCACATACATTCCTT------TGCTTCAC---------TCTGACCAT-TCTCAATTTCCAGCGTTCCAATGAACCAAGGATTCCAGACTCCCTTTATGAGTCTATATCCACGT----AGGTGTTGATGTGATTAGTGTTTGTGGGTCCCAAGATAGATGATGGGTGGCTACAAATGCATCTTGAAGATAG-AGAAAAATCAGCAATCAATTGCAGTGCCACCCAGACCTTCTCACTACACAGCAAACAAGTATTTTGGGGGCAATTATAGCTGT-TATATCAAAATCAAGAGGAATTAAAATCTGCCATCTCTTTATCTCTGTCTGTGGTGTTTGtgtctgtctgtctgtctgtctgtcATTCCCATTTTTTCCCATTTCAGTTCAGAAAGAAACATTCC-ATTCTTCTTCCCTTATAAAGGTCTCCTGTTCTTG
i mm10.chr11                I 531 I 378
e aotNan1.NW_018502359v1     7018238  100 -   7032639 I
e cebCap1.NW_016107730v1     1904325   86 +   1920343 I
e canFam3.chr9              21457664 4882 +  61074082 I
e manLeu1.NW_012106252v1     2169759  823 +   4244037 I
e dasNov3.JH570468            462571  648 -    852752 I
e otoGar3.GL873537          22846162  927 +  28711273 I
e saiBol1.JH378271           1853173   96 +   3513951 I
e calJac3.chr5              46143832  769 - 159171411 I
e colAng1.NW_012122154v1     2192766  828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405  848 -   8458610 I
e macNem1.NW_012014910v1     2100117  822 +  10377808 I
e macFas5.chr16             28043513  823 -  80997621 I
e rheMac8.chr16             30130660  824 -  77216781 I
e panPan2.chr17             16233418    0 +  83442489 C
e panTro5.chr17             16328533    0 +  83181570 C

a score=307104.000000
s hg38.chr17_JH159148v1_alt    16181 1236 +     88070 AGGGGGAAAACAATGTAGGAAA---AAAAATGGGAAGTCCTAGTTTCCAAACACCCCATCCACATCCCCCTCCCCAGGGACAAACTACTGGTTACTGCTTATTATGCCCTAATCTTGGTTTTCTCTTTCTCTTTACAGATGGTTGGTTACTATTCTCATTAGAAAGACTGAAGAAAAggctgggcacagtggctcatgcttgtaattccagcattttgggaggctgaggcgggtggatcatctaaggtcaggagttcaagaccagcctggcccatgtggtgaaaccctgtctctactaaagatgaaagaaagaaagaaggaaagaaaggaagaaagaaagaaagaaagaaaagaaagaaaagaaagaaagaaagaaaccgggcatggtgggcacctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcggtgagccgagatcgcaccattgcactccagcctgggcaacaggagcgaaactctgtctattaaaaaaaaaaaaaaGACTAAAGAGAAATAAGAGGAGCGTTGATTTCTATATCGCAAGCACAGTACAAGATTATCAGTACAAAGCAATAGGCCTTTTCCTGTTTAATGGCATACTCACTTTGTTTACAACCATTTCATTAAAAAACACATTTTCACCATGTTTTCTGCTGttttgtttttgtttttgtttttgtttttTTCCAACCAAAAAGCATCTGGAGCTTCTTTCATTCTTCTCATGGACTCCTACCATCCCTGTTTAATGACTTGTTCACGAATCTTTCTTCCTAaggctaaacctttgaagttgtagctatgcagttatttttgatctacaaaaatggaaacttcatatggctcaaactCGTATTCTCTACTTGGCCTTTATttttta---tttttttaagtagagatggggtttcaccacgttggccaggctggttttgaactcctgacctcaagtgatctgcctgccttgccctcccaaagtgctgggattacaggcacaagccaccacgcctgaccTACTTGGACTTTTTCAATCAAATCCCAGCCCATAGCTCCTTATAACTCCCTCTGGCATCTTTATAGTATACTGAAAAGTATTTTAAAAGGCCTTAGGATACTAATCACACACAGTAAAGTATTTTAAAAAGAATTAAGTCAACATAAGCCATCTTTTCTCCCAGTGTCTATTAGAATGAAATTTCCCCTGTCATTT
s gorGor5.CYUI01015385v1     4078871 1229 +   4267968 AGGGGGAAAACAATGTAGGAAA---AAAAATGGGAAGTACTAGTTTCCAAACATCCCATCCACATCCCCCTCCCCAGGGACAAACTACTGGTTACTGCTTATTATGCCCTAATCTTGGTTTTCTCTTTCTCTTTACAGATGGTTGGTTACTATTCTCATTTGAAAGACTGAAGAAAAggctgggcacagtggctcgtgcttgtaattccagcattttgggaggctgaggcgggtggatcatctaaggtcaggagttcaagaccagcctggcccatgtggtgaaaccctgtctctactaaagatgaaagaaagaaagaaggaaagaaaggaagaaagaaagaaagaaagaaaag-----aaagaaagaaagaaagaaactgggcatggtgggcacctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcggtgagccgagatcgcaccattgcactccagcctgggcaacaggagtgaaactctgtctatt-aaaaaaaaaaaaagactaaagagaaaTAAGAGGAGCGTTGATTTCTATATCGCAAGCACAGTACAAGATTATCAGTACAAAGCAATAGGCCTTTTCCTGTTTAATGGCATACTCACTTTGTTTACAACCATTTCATTAAAAAACACATTTCCACCATGTTTTCTGCTGttttttttgtttgtttgtttttgtttttttCCAACCAAAAAGCATCTGGAGCTTCTTTCATTCTTCTCATGGACTCCTACCATCCCTGTTTAATGACTTGTTCACGAATCTTTCTTCCTAaggctaaacctttgaaattgtagctatgcagttatttttgatctacgaaaacggaaatttcatatggctcaGACTCGTATTCTCTACTTGGCCTTCATttttta----ttttttaagtagagatggggtttcaccacgttggccaggctggttttgaactcctgacctcaagtgatctgcctgccttgccctcccaaagtgctgggattacaggcacgagccaccacgcctgaccTACTTGGCCTTTTTCAATCAAATCCCAGCCCATAGCTCCTTATAACTCCCTCTGGCATCTTTATAGTATACTGAAAAGTATTTTAAAAGGCCTTAGGATACTAATCACACACAGTAAAATATTTTAAAAAGAATTAAGTCAACATAAGCCATCTTTTCTCCCAGTGTCTATTAGAATGAAATTTCCCCTGTCATTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2059280 1195 -   2193130 AGGGGGAAAACAATGTAGGAAAAATAAAAAAGGGAAGTCCTAGTTTCCAAACACCCCATCCACATCCCCCTCCCCAGGGACAAACTATTGATTACTGCTTATTATGCCCTAATCTTGGTTTTCTCTTTCTCTTTACAGATGGTTGGTTACTACTCTCATTAGAAAGACTAAAGAAAAggctgggcgcagtggctcaagcttgtaattccagcactttgggaggctg------------------aggtcaggagttcaagaccagcctgccccatgtgatgaaaccctgtctttactaaaaatgcaagaaaaaa------aaagaaagaaagaaagaaagaaagaaagaaaag-------------aaagaaagaaaccgggcatggtgggcacctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcggtgagccaagattgcaccattgcactccagccttcgcaacaggagcgaaactctat------taaaaaaaaaaaagactaaagaaaaaTAAGAGGAGTGTTGTTTTCTATATCGCGAGCACAGTACAAGATTATCAGTACAAAGCAATAGACCTTTTCCTGTTTAATGGCATACTCACTCTGTTTACAACCATTTCCTTAAAAAACACATTTCCACCATGTTTTCTGCTGttttttttttgttt---ttttttttttttCCCAACCAAAAAGCATCTGGTGCTTCTTTTATTCTTCTCATGGACTCCTACCATCCCTGTTTAATGTCTTGTTCACGAATCTTTCTTCCTAaggctaaacttttgaaattgtagatatgcagttatttttgatctacaaaaatggaaatttcgtatggctcaaactCGTATTCTCTACTTGGCCTTTTTTTTTttttttttttttaagtaaagatggggtttcatcatgttggccaggctggttttgaactcctgacctcaagtgatctgcctgcctcaccctcccaaagtgctgggattacaggcatgagccaccacgcctggccTACTTGGACTTTTTCAATCAAATCCCAGTACACAGCTCTGTAAAAGTCCCTCTGGCATCTTTATAGTATACTGAAAAGTATTTTAAAAGGCCTTAGGATACTAATCACACACAGTAAAGTATTTTAAAAAGAATTAAGTCAACTTAAGCCGTCTTTTCTCCCAGTGTCTATTAGAATGAAATTT-CCCTGTCATTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
e mm10.chr11                22113540  378 - 122082543 I
e aotNan1.NW_018502359v1     7018238  100 -   7032639 I
e cebCap1.NW_016107730v1     1904325   86 +   1920343 I
e canFam3.chr9              21457664 4882 +  61074082 I
e manLeu1.NW_012106252v1     2169759  823 +   4244037 I
e dasNov3.JH570468            462571  648 -    852752 I
e otoGar3.GL873537          22846162  927 +  28711273 I
e saiBol1.JH378271           1853173   96 +   3513951 I
e calJac3.chr5              46143832  769 - 159171411 I
e colAng1.NW_012122154v1     2192766  828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405  848 -   8458610 I
e macNem1.NW_012014910v1     2100117  822 +  10377808 I
e macFas5.chr16             28043513  823 -  80997621 I
e rheMac8.chr16             30130660  824 -  77216781 I
e panPan2.chr17             16233418    0 +  83442489 C
e panTro5.chr17             16328533    0 +  83181570 C

a score=1261472.000000
s hg38.chr17_JH159148v1_alt    17417 1405 +     88070 TTCTGATTGTTTCCCTATCTATTTAATAACTAGGGTACACGTCAGACTTGTCCTGAGAAGTTCCATTCCTGAGGAAAAGCTATGCA-TGATTGTCTTATTTTGGAAATCTCAAATGTGGGATTCGTGTAATGGGCTTTGATAAAGGATGTTAAGGGGCAAAGTTAAGGCAGCCTTGTAAAGGTCAACTTGGAAACTAAATATCAGTAGGGAGTTATCTCAGTGGCTATAAGTTAAGACAACAGAATAAAAACTGATATTTGAGACATAAAAATGGCCC-AAAAGATGGGTGTAATGAGCCCATGAGTCCCCAGTATAACATGAAACTTGCCCATCTGCGTGGTGTACGGCATTTGGTGTTACTCATGTTGGTCTCATCAGTTTGCCCACCTAAATAAATTCATCTTACAAC-AATAGTTCTATAACATCTAGAAGTAAGTTCCCTCCTGTAGCCCACTTCATCAGAAACTTCTTGGCAACACCTGAACCTAGCTGGAACTGGAAAAATATTTGATGGTAGTGATTTCCTGATAAATAGTCTAGAGCTGTTGCAAACAAAATCCAAGGATTGCTCtttttagacacagtcttgctctgtcgcacagtctagagtgcagtggcttgatgttggctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctgccgagtagctgagattgcaggtgcgtgtcaccacaccccactaattttttgcatttttaatagagacggggtttcaccacatttgtcaggctggttttgaactcctgacctcaagtgatccacccaccttggcctcccaaagtgctaggattacaggtgtgagccactgtgcctggTTAAAGGGTTGCTGTTTAAATGAACTATTTGCTTATGCTCTAAGTCAGCATGGATGGGATCCATAGATCTTTCCCGAAGTCTTAAAAATTAGTCTCTTGACTTAGTGGCATGGGAATAGATGTGAAAGAACTTTGTTTTTTTAAAAATATTAATTAATTAATTAAtt----tttgagacaaagtcttgctctttcacccaggctggagtgcagtggcgcgatctcagctcactgcaaactctgcctcccaggttcaagtgattttcgtgcctaagcctcccgagtagctgggaatacaggtgcacactgccaagcctggttaattttgtatttttagtagagacgggttttgccatgttggccaggctggtctcgaactcctgacctcaaatgatcctcctgccttggcctttcaaagtgctgggattacaggtgtgagccactgtgccaggccAAAATGGGAAAAAGCTTTGTAAAATATAAAATATCCTTTAAATTTAAGAGCTTATGAAGGATATACTGCACACATAATCTAGGTCACGAAAGGATATGC
s panTro5.chr17             16328533 1409 +  83181570 TTCTGATTGTTTCCCTATCTATTTAATAACTAGGGTACACATCATACTTGTCCTGAGAAGTTCCATTCCTGAGGAAAAACTATGCA-TGATTGTCTTATTTTGGAAATCTCAAATGTGGGATTCGTGTAATGGGCTTTGATAAAGGATGTTAAGGGGCAAAGTTAAGGCAGCCTTGTAAAGGTCAACTTGGAAACTAAATATCAGTAGGGAGTTATCTCAGTGGCTATAAGTTAAGACAACAGAATAAAAACTGATATTTGAGACATAAAAATGGCCC-AAAAGATGGGTGTAATGAGCCCATGAGTCCCCAGTATAACATGAAACTTGCCGATCTGCGTAGTGTACGGCATTTGGTGTTACTCACGTTGGTCTCATCAGTTTGCCCATCTAAATAAATTCATCTTACAAC-AATAGTTCTATAACATCTAGAAGTAAGTTCCCTCCTGTAGCCCACTTCATCAGAAACTTCTTGGCAACACCTGAACCTAGCTGGAACTGGAAAAATATTTGATGGTAGTGATTTCCTGATAAATAGTCCAGAGCTGTTGCAAACAAAATCCAAGGATTGCTCtttttagacagagtcttgctctgtcgcacaggctagagtgcagtggcttgatgttggctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctgccgagtagctgagattacaggtgcgtgtcaccacaccccactaattttttgcatttttaatagagacggggtttcaccacattggtcaggctggttttgaactcctgacctcaagtgatccacccaccttggcctcccaaagtgctaggattacaggtgtgagccactgtgcctggTTAAAGGGTTGCTGTTTAAATGAACTATTTGCTTATGCTCTAAGTCAGCATGGATGGGATCCATAGATCTGTCCCGAAGTCTTAAAAATTAGTCTCTTGACTTAGTGGCATGGGAATAGATGTGAAAGAACTTTGTTTTTAAAAAAATattaattaattaattaattaatttttgagacaaagtctcgctctttcacccaggctggagtgcagtggcgcgatctcagctcactgcaaactctgcctcccaggttcaagtgattttcgtgcctaagcctcccgagtagctgggaatacaggtgcacactgccaagcctggttaattttgtatttttagtagagacgggttttgccatgttggccaggctggtctcgaactcctgacctcaaatgatcctcccgccttggcctctcaaagtgctgggattaaaggtgtgagccactgtgcccggccAAAATGGGAAAAAGCTTTGTAAAATATAAAATATCCTTTAAATCTAAGAGCTTATGAAGGATATACTGCACACATAATCTAGGTCACGAAAGGATATGC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16233418 1408 +  83442489 TTCTGATTGTTTCCCTATCTATTTAATAACTAGGGTACACATCATACTTGTCCTGAGAAGTTCCATTCCTGAGGAAAAACTATGCA-TGATTGTCTTATTTTGGAAATCTCAAATGTGGGATTCGTGTAATGGGCTTTGATAAAGGATGTTAAGGGGCAAAGTTAAGGCAGCCTTGTAAAGGTCAACTTGGAAACTAAATATCAGTAGGGAGTTATCTCAGTGGCTATAAGTTAAGACAACAGAATAAAAACTGATATTTGAGACATAAAAATGGCCC-AAAAGATGGGTGTAATGAGCCCATGAGTCCCCAGTATAACATGAAACTTGCCGATCTGCGTAGTGTACGGCATTTGGTGTTACTCACGTTGGTCTCATCAGTTTGCCCATCTAAATAAATTCATCTTACAAC-AATAGTTCTATAACATCTAGAAGTAAGTTCCCTCCTGTAGCCCACTTCATCAGAAACTTCTTGGCAACACCTGAACCTAGCTGGAACTGGAAAAATATTTGATGGTAGTGATTTCCTGATAAATAGTCCAGAGCTGTTGCAAACAAAATCCAAGGATTGCTCtttttagacagagtcttgctctgtcgcacaggctagagtgcagtggcttgacgttggctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctgccgagcagctgagattacaggtgcgtgtcaccacaccccactaattttttgcatttttaatagagacggggtttcaccacattggtcaggctggttttgaactcctgacctcaagtgatccacccaccttggcctcccaaagtgctaggattacaggtgtgagccactgtgcctggTTAAAGGGTTGCTG-TTAAATGAACTATTTGCTTATGCTCTAAGTCAGCATGGATGGGATCCATAGATCTGTCCCGAAGTCTTAAAAATTAGTCTCTTGACTTAGTGGCATGGGAATAGATGTGAAAGAACTTTGTTTTTAAAAAAATattaattaattaattaattaatttttgagacaaagtctcgctctttcacccaggctggagtgcagtggcacgatctcagctcactgcaaactctgcctcccaggttcaagtgattttcgtgcctaagcctcccgagtagctgggaatacaggtgcacactgccaagcctggttaattttgtatttttagtagagacgggttttgccatgttggccaggctggtctcgaactcctgacctcaaatgatcctcccgccttggcctctcaaagtgctgggattaaaggtgtgagccactgtgcccggccAAAATGGGAAAAAGCTTTGTAAAATATAAAATATCCTTTAAATCTAAGAGCTTATGAAGGATATACTGCACACATAATCTAGGTCACGAAAGGATATGC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4080100 1405 +   4267968 TTCTGATTGTTTCCCTATCTATTTAATAACTAGGGTACACGTCAGACTTGTCCTGAGAAGTTCCATTCCTGAGGAAAAACTATGCG-TGATTGTCTTATTTTGGAAATCTCAAATGTGGGATTCGTGTAATGGGCTTTGATAAAGGATGTTAAGGGGCAAAGTTAAGGCAGCCTTGTAAAGGTCAACTTGGAAACTAAATATCAGTAAGGAGTTATCTCAGTGGCTATAAGTTAAGACAACAGAATAAAAACTGATATTTGAGACATAAAAATGGCCC-AAAAGATGGGTGTAATGAGCGCATGAGTCCCCAGTATAACATGAAACTTGCCGATCTGCGTGGCGTACGGCATTTGGTGTTACTCACGTTGGTCTCATCAGTTTGCCCACCTAAATAAATTCATCTTACAAC-AATAGTTCTATAACATCTAGAAGTAAGTTCCCTCCTGTAGCCCACTTCATCAGAAACTTCTTGGCAACACCTGAACCTAGCTGGAACTGGAAAAATATTTGATGGTAGTGATTTCCTGATAAATAGTCCAGAGCTGTTGCAAACAAAATCCAAGGATTGCTCtttttagacagagtcttgctctgtcgcacaggctagagtgcagtggcttgatgttggctcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctgccgagtagctgagattacaggtgcgtgtcaccacactccactaattttttgcatttttaatagagacggggtttcaccacattggtcaggctggttttgaactcctgacctcaagtgatccacccaccttggcctcccaaagtgctaggattacaggtgtgagccactgtgcctggTTAAAGGGTTGCTGTTTAAATGAACTATTTGCTTATGCTCTAAGTCAGCATGGATGGGATCCATAGATCTGTCCTGAAGTCTTAAAAATTAGTCTCTTGACTTAGTGGCATGAGAATAGATGTGAAAGAACTTTGTTTTTTAAAAAATATTAATTAATTAATTAAtt----tttgagacaaagtctcgctctttcacccaggctggagtgcagtggcgcgatctcagctcactgcaaactctgcctcccaggttcaagtgattttcgtgcctaagcctcccgagtagctgggaatacaggtgcacactgccaagcctggttaattttgtatttttagtagagacgggttttgccatgttggccaggctggtctcgaactcctgacctcaaatgatcctcccgccttggcctctcaaagtgctgggattacaggtgtgagccactgtgccctgccAAGATGGGAAAAAGCTTTGTAAAATATAAAATATCCTTTAAATCTAAAAGCTTATGAAGGATATACTGCACACATAATCTAGGTCACGAAAGGATATGC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2060475 1402 -   2193130 TTCTGATTGTTTCCGTATCTATTTAATAACTAGGGTACACGTCAGACTTGTCCTGAGAAGTTCCATTCCTGAGGAAAAACTATCCATTGATTGTCTTATTTTGGAAATCTCAAATGTGGG-TTCGTATAATGGGCTTTGATAAAAGATGTTAAGGGGCAAATTTAAGGCAGCCTCATAAAGGTCAACTTGGAAACTAAATATCAGTAGGGAGTTATCTCAGTGGCTATAAGTTAGGACAATAGAATAAAAACTGATATTTGAGACATAAAAATGGCCCAAAAAGATGGGCGTAATGAGCCCATGAGTCCCCAGTATAACATGAAACTTGCCGATCTGCGTGGTGTACGGCATTTGGTGTTACTCAGGTTGGTCTCATCAGTTTACCCACCTAAATAAATTCATCTTACAACAAAGAGTTCTATAACATCTAGAAGTAAGTTCCCTCCTGTAGCCCACTTCATCAGAAACTTCTTGGCAACACCTGAACCTGGCTGGAACTGGAAAAATATTTGATGGTAGTGATTTCCTGATAAATAGTCCAGAGCTGTTGCAAACAAAATCAAAGGATTGCTCtttttagacagagtcttgctctgtcacacaggctggagtgcagtggcttgatcttggctcactgcgacctttgcctcctgggttcaagtgattatcctgcctcagcctcccgagtagctgagattacaggtgcgtgtcaccacaccccactaattttttgtatttttaataaagatggggtttcaccacattgatcaggctggttttgaactcctgacctcaagtgattcacctacctcggcctcctaaagtgctaggattacaggtgtaagccactgtgcctggTTAAAGGGTTGCTGTTTAAATAAACTATTTGCTTGTGTTCTAAGTCAGCATGGATGGGATCCATAGATCTGTCCCAAAGTCTTAAAAATTAGTCTCTTGACTTAGTGGCATGGGAATAGATGTGAAAAAACTTTA-----AAAAAAATATTAATTAATTAATTAAtt----tttgagacaaagtctcactctttcacccaggctggagtgcagtggtgcgatctcagctcactgcaacctccgcctcccaggttcaagtgatttttgtgcctgagcctcccgagtagctgggaatacaggtgcacaccaccaagcctggctaattttgtatttttagtagagatgggttttgccacgttggccaggctggtctcgaactcctgacctcaaatgatcctcccgccttggcctctcaaagtgctgggattacaggcgtgagccactgcgcctggccAAAATGGGAAAAAGCTTTGTAAAATATAAAATATCCTTTAAATTTAAGAGCTTATGAAGGATATACTGCACACATAATCTAGGTCATGAAAGGATATGC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
e mm10.chr11                22113540  378 - 122082543 I
e aotNan1.NW_018502359v1     7018238  100 -   7032639 I
e cebCap1.NW_016107730v1     1904325   86 +   1920343 I
e canFam3.chr9              21457664 4882 +  61074082 I
e manLeu1.NW_012106252v1     2169759  823 +   4244037 I
e dasNov3.JH570468            462571  648 -    852752 I
e otoGar3.GL873537          22846162  927 +  28711273 I
e saiBol1.JH378271           1853173   96 +   3513951 I
e calJac3.chr5              46143832  769 - 159171411 I
e colAng1.NW_012122154v1     2192766  828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405  848 -   8458610 I
e macNem1.NW_012014910v1     2100117  822 +  10377808 I
e macFas5.chr16             28043513  823 -  80997621 I
e rheMac8.chr16             30130660  824 -  77216781 I

a score=107062.000000
s hg38.chr17_JH159148v1_alt    18822 101 +     88070 AAGATGAGTATAGATTACTAGGTGATAAATTGGGAAA-TGCCTTAGTTGCAAAGAAGATAATTCAAA-TTATAAATACAATGAAGAAATGTGCAGGAAAGATA
s panTro5.chr17             16329942 101 +  83181570 AAGATGAGTATAGATTACTAGGTGATAAATTGGGAAA-TGCCTTAGTTGCAAAGAAGATAATTCAAA-TTATAAATACAATGAAGAAATGTGCAGGAAATATA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16234826 101 +  83442489 AAGATGAGTATAGATTACTAGGTGATAAATTGGGAAA-TGCCTTAGTTGCAAAGAAGATAATTCAAA-TTATAAATACAATGAAGAAATGTGCAGGAAAGATA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4081505 101 +   4267968 AAGATGAGTATAGATTACTAGGTGATAAATTGGGAAA-TGCCTTAGTTGCAAAGAAGATAATTCAAA-TTATAAATACAATGAAGAAATGTGCAGGAAACATA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2061877 101 -   2193130 AAGATGAGTGTAGATTACTAGGTGATAAATTGGTAAA-TGCCTTAGTTGCAAAGAAGATAATTCAAA-TTATAAATACAATGAAGAAATGTGCAGGAAAGATA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s canFam3.chr9              21462546 103 +  61074082 AAGATGAGTAGAGATTATTAGGAAATTAACCAGGAAAGTGCTATTGTAGCTAGGAAGACCACTCAAAGTTATGACAAAAGAAAGGAAAAAGGAAACAAAAATA
i canFam3.chr9              I 4882 I 107
e mm10.chr11                22113540 378 - 122082543 I
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325  86 +   1920343 I
e manLeu1.NW_012106252v1     2169759 823 +   4244037 I
e dasNov3.JH570468            462571 648 -    852752 I
e otoGar3.GL873537          22846162 927 +  28711273 I
e saiBol1.JH378271           1853173  96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e colAng1.NW_012122154v1     2192766 828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405 848 -   8458610 I
e macNem1.NW_012014910v1     2100117 822 +  10377808 I
e macFas5.chr16             28043513 823 -  80997621 I
e rheMac8.chr16             30130660 824 -  77216781 I

a score=272062.000000
s hg38.chr17_JH159148v1_alt    18923 296 +     88070 TTTTAGAGGTGGCAAAATTAACCAGTTATTAAGACAATCAGCAGAGGTGGTGGACAGGGATGGTGAATCTCATGCATGTCCAATTTCTAGTGATACTCATTAGTTAAATCCAAACCCTCACTAGTGGCCATGAAGTCCAATGTTTCTTTAAAAAGGCAGTAAGGACCAATGaagatttttttccttgtccatagtttagtcaagcttctgaaccttctcataggcccatgggtgcacttccttgtaaaatccagttttgtaaaattttagcaaagagccctgctaaataggtttag
s panTro5.chr17             16330043 296 +  83181570 TTTTAGAGGTGGCAAAATTAACCAGTTATTAAGACAATCAGCAGAGGTGGTGGACAGGGATGGTGAATCTCATGCATGTCCAATTTCTAGTGATACTCATTAGTTAAATCCAAACCCTCACTAGTGGCCATGAAGTCCAATGTTTCTTTAAAAAGGCAGTAAGGACCAATGaagatttttttccttgtccatagtttagtcaagcttctgaaccttctcataggcccatgggtgcacttccttgtaaaatccagttttgtaaaattttagcaaagagccctgctaaataggtttag
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16234927 296 +  83442489 TTTTAGAGGTGGCAAAATTAACCAGTTATTAAGACAATCAGCAGAGGTGGTGGACAGGGATGGTGAATCTCATGCATGTCCAATTTCTAGTGATACTCATTAGTTAAATCCAAACCCTCACTAGTGGCCATGAAGTCCAATGTTTCTTTAAAAAGGCAGTAAGGACCAATGaagatttttttccttgtccatagtttagtcaagcttctgaaccttctcataggcccatgggtgcacttccttgtaaaatccagttttgtaaaattttagcaaagagccctgctaaataggtttag
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4081606 296 +   4267968 TTTTAGAGGTGGCAAAATTAACCAGTTATTAAGACAATCAGCAGAGGTGGTGGACAGGGATGGTGAATCTCATGCATGTCCAATTTCTAGTGATACTCATTAGTTAAATCCAAACCCTCACTAGTGGCCATGAAGTCCAATGTTTCTTTAAAAAGGCAGTAAGGACCAATGaagatttttttccttgtccatagtttagtcaagcttctgaaccttctcataggcccatgggtgcacttccttgtaaaatccagttttgtaaaattttagcaaagagccctgctaaataggtttag
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2061978 294 -   2193130 TTTAAGAGGTGGCAAAATTAACCAGTTATT--TACAATCAGCAGAGGTGGTGGACAGGGATGGTGAATCTCATGCATGTCCAATTTCTAGTGATACTCATTAGTTAAATCCAAACCCTCACTAGTGGCCACGAAGTCCAATATTTCTTTGAAAAGGCAGTAAGGACCAATGaagatttttttccttgtccatagtttagtcaagcttctgaaccttctcataggcccatgtgcgcacttccttgtaaaatccagttttgtaaaattttagcaaagagccctgctaaatagatttag
i nomLeu3.chrUn_GL397460_1  C 0 C 0
e mm10.chr11                22113540 378 - 122082543 I
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e cebCap1.NW_016107730v1     1904325  86 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e manLeu1.NW_012106252v1     2169759 823 +   4244037 I
e dasNov3.JH570468            462571 648 -    852752 I
e otoGar3.GL873537          22846162 927 +  28711273 I
e saiBol1.JH378271           1853173  96 +   3513951 I
e calJac3.chr5              46143832 769 - 159171411 I
e colAng1.NW_012122154v1     2192766 828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405 848 -   8458610 I
e macNem1.NW_012014910v1     2100117 822 +  10377808 I
e macFas5.chr16             28043513 823 -  80997621 I
e rheMac8.chr16             30130660 824 -  77216781 I

a score=5971.000000
s hg38.chr17_JH159148v1_alt    19219 4 +     88070 caag
s panTro5.chr17             16330339 4 +  83181570 caag
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16235223 4 +  83442489 caag
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4081902 4 +   4267968 caag
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2062272 4 -   2193130 caag
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s saiBol1.JH378271           1853269 4 +   3513951 caga
i saiBol1.JH378271          I 96 C 0
s cebCap1.NW_016107730v1     1904411 4 +   1920343 caaa
i cebCap1.NW_016107730v1    I 86 C 0
e mm10.chr11                22113540 378 - 122082543 I
e aotNan1.NW_018502359v1     7018238 100 -   7032639 I
e canFam3.chr9              21462649 107 +  61074082 I
e manLeu1.NW_012106252v1     2169759 823 +   4244037 I
e dasNov3.JH570468            462571 648 -    852752 I
e otoGar3.GL873537          22846162 927 +  28711273 I
e calJac3.chr5              46143832 769 - 159171411 I
e colAng1.NW_012122154v1     2192766 828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405 848 -   8458610 I
e macNem1.NW_012014910v1     2100117 822 +  10377808 I
e macFas5.chr16             28043513 823 -  80997621 I
e rheMac8.chr16             30130660 824 -  77216781 I

a score=798926.000000
s hg38.chr17_JH159148v1_alt    19223 362 +     88070 aactccccatcctcgatatctgatcacccttaatagcggatcagatctcttatctgccaccattctccaagtgatgtttgatcaccctcgcctgtcttcagcaagagcacttttag-gtcagtttagccaaaatttccctactggtgatgcttcctcttagtaattttccatccactgaccgccaccctgctccttggctgtaaattctcacttgcccatgctatgttaggagatgagtccaatctctgtctcccaatgcaagaccctgttatggtggttcctttgtttactgcagtgttcctgaataaagtctcccttaccaggctttcacaagtgccattgaataattttttttttaacaA
s panTro5.chr17             16330343 361 +  83181570 aactccccatcctcgatatctgatcacccttaatagcggatcagatctcttatctgccaccattctccaagtgatgtttgatcaccctcgcctgtcttcagcaagagcacttttag-gtcagtttagccaaaatttccctactggtgatgcttcctcttagtaattttccatccactgaccgccaccctgctccttggctgtaaattctcacttgcccatactattttaggagatgagtccaatctctgtctcccaatgcaagaccctgttatggtggttcctttgtttactgcagtgttcctgaaaaaagtctcccttaccaggctttcacaagtgccactgaataattttttttt-aacaA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16235227 360 +  83442489 aactccccatcctcgatatctgatcacccttaatagaagatcagatctcttatctgccaccattctccaagtgatgtttgatcaccctcgcctgtcttcagcaagagcacttttag-gtcagtttagccaaaatttccctactggtgatgcttcctcttagtaattttccatccactgaccgccaccctgctccttggctgtaaattctcacttgcccatgctattttaggagatgagtccaatctctgtctcccagtgcaagaccctgttatggtggttcctttgtttactgcagtgttcctgaataaagtctcccttaccaggctttcacaagtgccactgaataatttttttt--aacaA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4081906 354 +   4267968 aactccccatcctctatatctgatcacccttaatagcggatcagatctcttatctgccaccattctccaagtgatgtttgatcaccctcgcctgtcttcagcaagagcacttttag-gtcagtttagcc-aaatttccctactggtgatgcttcctcttagtaattttccatccactgaccgccaccctgctccttggctgtaaattctcacttgcccatgctatgttaggagatgagtccaatctctgtctcc-------aatccctgttatggtggttcctttgtttactgcagtgttcctgaataaagtctcccttaccaggctttcacaagtgccattgaataattttttttttaacaA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2062276 360 -   2193130 agctccccatcctcgatatctaatcacccttaacagcggatcagatctctcatctgccacaattctccaagttatatttgatcaccctcgcctgtcttcagcaagagcacttttag-gtcagtttagccaaaatttccctactggtgatgcttcctctcagtaattttccatccactgaccaccaccctgctccttggctgtaaattctcacttgcccatgctatattaggagatgaatccaatctctgtctcccattgcaagaccctgttatggtggttcctttgtttgctgcaatgttcctgaataaagtctcccttaccaggctttcacaagtgccattgaataatttttttt--aacaA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s saiBol1.JH378271           1853273 359 +   3513951 aactccccagcctcgatatctgatcacccttaatatctgatcggatctcttatcctccaccattctccaagtgatgtttgatcaccctggcctgtcatcagcaagaatactgttaacatcagtttagccaaaatgtccccattgctgatgcttccttctagtaattttctatccactgacccccaccttgctccttggctgtcagttctcacttgctcatgctatattaggagatgagtccaatctctctctgccagtgcaagaagctgttat-gtggttcctttgcctactgcagtgttcctgaat-acgtctcccttaccatgctttcacaagtgtcactgaataattattttt--aacaA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1904415 358 +   1920343 aactccccatcctcgatatctggtcacccttaatagctgatcagatcccttatcctccgccattctccaagtgatgtttcat-accctggcctgtcatcagcaagaatacggttag-atcagtttagccaaaatgtctccattgctgatgcttcctcttagcaattttccatccactgacccccaccctgctccttggctgtcaattctcacttgcttatgctatattaggagatgagtccaatctctctctgccagtgcaagaccctgttatggtggttcctttgcctactgcagtgttcctgagt-aagtctcccttcccatgctttcacaagtgtcactgaataattattttt--aacaA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7018338 359 -   7032639 aactccccatcctcgatatctgatcacccttaatagctgatcagatctcttatcctccatcattctccaagtgatgtttgatcaccctgacctgtcatcagcaagaatactgttag-atcaatttagccaaaatgtccccattgctgatgcttcctcttagcaattttccatccactgacccccaccctgctccttggctgtcagttctcacttgctcatgctctattaggagatgagtccaatctctctctgccagtgcaagaccctgttatggtggttcctttgcctactgcagtgttcctgaat-aagtctcccttaccatgctttcacgagtgtcactgaataattactttt--aacaA
i aotNan1.NW_018502359v1    I 100 C 0
e mm10.chr11                22113540 378 - 122082543 I
e canFam3.chr9              21462649 107 +  61074082 I
e manLeu1.NW_012106252v1     2169759 823 +   4244037 I
e dasNov3.JH570468            462571 648 -    852752 I
e otoGar3.GL873537          22846162 927 +  28711273 I
e calJac3.chr5              46143832 769 - 159171411 I
e colAng1.NW_012122154v1     2192766 828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405 848 -   8458610 I
e macNem1.NW_012014910v1     2100117 822 +  10377808 I
e macFas5.chr16             28043513 823 -  80997621 I
e rheMac8.chr16             30130660 824 -  77216781 I

a score=884416.000000
s hg38.chr17_JH159148v1_alt    19585 309 +     88070 GACTATGATGAATTTTTAAAAGCCAAATCCCTATTGTTTCCCTGATAACA----TATTATTTCACCAGAAAAATAAATATAAGAAATTCATTTTAAATGTATCTCAAACCATCAGAAAAGGGCTTAACCTTATTGAACTGAGCTACTAGGAAAGAGGAGGAAAGAAGAAGAGTGGAAACCATCGGTCATTCAGTGCAAGCA-TGTCCGGCTGTCACCAATAAGCTAGCTGTACCTGTCTTAGGACAGAGCTG----------------------TATGAAGGAAGTTAATATTTACCAGTTAAAAGAAAAACGAAAGAGGAAAACAGTGATTCAGC
s panTro5.chr17             16330704 309 +  83181570 GACTATGATGAATTTTTAAAAGCCAAATCCCTATTGTTTCCCTGATAACA----TATTATTTCACCAGAAAAATAAATATAAGAAATTCATTTTAAATGTATCTCAAACCATCAGAAAAGGGCTTAACCTTATTGAACTGAGCTACTAGGAAAGAGGAGGAAAGAAGAAGAGTGGAAAGCATCGGTCATTCAGTGCAAGCA-TGTCCGGCTGTCACCGATAAGCTAGCTGTACCTGTCTTAGGACAGAGCTG----------------------TATGAAGGAAGTTAATATTTACCAGTTAAAAGAAAAATGAAAGAGGAAAACAGTGATTCAGC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16235587 309 +  83442489 GACTATGATGAATTTTTAAAAGCCAAATCCCTATTGTTTCCCTGATAACA----TATTATTTCACCAGAAAAATAAATATAAGAAATTCATTTTAAATGTATCTCAAACCATCAGAAAAGGGCTTAACCTTATTGAATTGAGCTACTAGGAAAGAGGAGGAAAGAAGAAGAGTGGAAAGCATCGGTCATTCAGTGCAAGCA-TGTCCGGCTGTCACCGATAAGCTAGCTGTACCTGTCTTAGGACAGAGCTG----------------------TATGAAGGAAGTTAATATTTACCAGTTAAAAGAAAAATGAAAGAGGAAAACAGTGATTCAGC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4082260 309 +   4267968 GACTATGATGAATTTTTAAAAGCCAAATCCCTATTGTTTCCCTGATAACA----CATTATTTCACCAGAAAAATAAATATAAGAAATTCATTTTAAATGTATCTCAAACCATCAGAAAAGGGCTTAACCTTATTGAACTGAGCTACTAGGAAAGAGGAGGAAAGAAGAAGAGTGGAAAGCATCGGTCATTCAGTGCAAGCA-TGTCCGGCTGTCACCAATAAGCTAGCTGTACCTGTCTTAGGACTGAGCTG----------------------TATGAAGGAAGTTAATATTTACCAGTTAAAAGAAAAACGAAAGAGGAAAACAGTGATTCAGC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2062636 331 -   2193130 GACTATGATGAATTTTTAAAAGCCAAATCCCTATTGTTTCCCTGATAGCA----TATTATTTCACCAGAAAAATAAATATAAGAAGTTAATTTTAAATGTGTCTTAAACCATCAGAAAAGAGCTTAACCTTATTAAACTGAGCTACTAGGAAAGAGGAGGAAAGAAGAAGAGTGGAAAGCACCGGTCATTCAGTGCAAGCA-TGTCCGACTGTCACCAATAAGCTAGCTGTACCTGTCTTAGGACAGAGCTGTACCTGTCATAGGACAGAGCTATATGAAGGAAGTTAATATTTACCAGTTAAAAGCAAAATGAAAGAGGAAAACAGTGATTCAGC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s calJac3.chr5              46144601 311 - 159171411 GACTATGATGAATTTTTAAGAGCCAAATCCTTATTGTTTTCCTGATAACACAATTATTATTTCACCAGAAAAATAAATATAAGAAGTCCATTTTAAATGTATCTCAAACCATCAGAAAAGGACTTAACCTTATTGAACTGAGCTACCAGGAAAGTGGAGG---GAAGAAAAATGGATAGGATAGGTCACTCAGTTCAAGCACTGTCTGGCTGCCACCAATGAGCTAGCTGTACCTGTTTTAGGACAGAGCAG----------------------TACAAAGAAAGTTAATATTTATCAGTTAAAAGCAAAGTAAAAGAGGAAAGCAGCAATTCAGC
i calJac3.chr5              I 769 C 0
s saiBol1.JH378271           1853632 304 +   3513951 GACTGTGATGAATTTTTAAGAGCCACATCC---TTGTTTCCCTGATAACA----TATTATTTCATCAGAAAAATAAATATAAGAAGTCCATTTTAAATGTATCTCAAACCATCAGAAAAGGACTTAACCTTATTGAACTGAGCTACCAGGAAAGAGGAGG---GAAGAAAAGTGGGTAGGATAGGTCACTCAGTGCAAGCATTGTCCAGCTGCCACCAATGAGCTAGCGGTACCTGTCTTAGGACAGAGCTG----------------------TACAAAGGAAGTTAATATTTACCGGTGAAAAGCAAAGTAAAAGAAGAAAGCAGCAATTCAGC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1904773 304 +   1920343 GACTATGATGAATTTTTAAGAGCCAAATCC---TTGTTTCCCTGATAACA----TATTATTTCATCAGAAAAATAAACATAAGTAGTCCATTTTAAATGTATCTCAAACCATCAGAAAAGGACTTAACCTTACTGAACTGAGCTACCAGGAAAAAGGAGG---GAAGAAAAGTGGATAGGATAGGTCACTCAGTGCAAGCGTTGTCTGGCTGCCACCAATGAGCTAGCTGTACCTGTCTTAGGACAGAGCTA----------------------TACAAAGGAAGTTAATATTTACCAGTTAAAAGCAAAGTAAAAGAGGAAAGCAGCAATTCAGC
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7018697 307 -   7032639 GACTGTGATGAATTTTTAAGAGCCAAATCCTTATTGTTTCCCTGATAACA----TACTATTTCACCAGAAAAATAAATGTAAGAAGTCCATTTTAAATGTATCTCAAACCATCAGAATAGGACTTAACCTTATTGAACTGAGCTACCAGGAAAGAGGAGG---GAAGAAAAGTGGATAGGGTAGGTCACTCAGTGCAAGCGTTGTCCGGCTGCCACCAATGAACTAGCTGTACCTGTCTTAGGACAGAGCTA----------------------TACAAAGGAAGTTAATATTTACCAGTTAAAAGCAAAGTAAAAGAGGAAAGCAGCAATTCAGC
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22113540 378 - 122082543 I
e canFam3.chr9              21462649 107 +  61074082 I
e manLeu1.NW_012106252v1     2169759 823 +   4244037 I
e dasNov3.JH570468            462571 648 -    852752 I
e otoGar3.GL873537          22846162 927 +  28711273 I
e colAng1.NW_012122154v1     2192766 828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405 848 -   8458610 I
e macNem1.NW_012014910v1     2100117 822 +  10377808 I
e macFas5.chr16             28043513 823 -  80997621 I
e rheMac8.chr16             30130660 824 -  77216781 I

a score=1126053.000000
s hg38.chr17_JH159148v1_alt    19894 356 +     88070 ACTAAACAGAATT-------AAGAGTCAGTC-----ATTTGAAATATAGAAAGCCCTAGAAATACCATTACAAACAACAATAATAACAATAAGCCCCCTATTGTATAATAACAAATTGTGCAATAGGTAAAAGATAGATTGTTTAAAGTCTTCTTGGATGTT-GTAAGTTATTTTCAGGGCCAAAAAGG----------------------------------AAAAAACTGCTCTTGCAATTCAAGTTCGGGTATATATTTTGCAAATGCTGGCATGCTCAATGCTTCCTGAAGGAGAGGGAGCTATCCTTATTTTGATCAGTTCAGATTGAATGAAAATTTTCTCTGATGCTAATATAGAtccagtctccc-aaattttaggttccccacgattcttcaaac
s panTro5.chr17             16331013 356 +  83181570 ACTAAACAGAATT-------AAGAGTCAGTC-----ATTTGAAATATAGAAAACCCTAGAAATACCATTACAAACAACAATAATAACAATAAACCCGCTATTGTATAAAAACAAATTGTGCAATCGGTAAGAGATACATTGTTTAAAGTCTTCTTGGATGTT-GTAAGTTATTTTCAGGGCCAAAAAGG----------------------------------AAAAAACTGCTCTTGCAATTCAAGTTCGGGTATATATTTTGCAAATGCTGGCATGCTCAATGCTTCCTGAAGGAGAGGGAGCTATCCTTATTTTGATCAGTTCAGATTGAATGAAAATTTTCTCTGATGCTAATATAGAtccagtctccc-aaattttaggttccccacgattcttcaaac
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16235896 356 +  83442489 ACTAAACAGAATT-------AAGAGTCAGTC-----ATTTGAAATATAGAAAACCCTAGAAATACCATTACAAACAACAATAATAACAATAAACCCGCTATTGTATAAAAACAAATTGTGCAATAGGTAAGAGATACATTGTTTAAAGTCTTCTTGGATGTT-GTAAGTTATTTTCAGGGCCAAGAAGG----------------------------------AAAAAACTGCTCTTGCAATTCAAGTTCGGGTATATATTTTGCAAATGCTGGCATGCTCAATGCTTCCTGAAGGAGAGGGAGCTATCCTTGTTTTGATCAGTTCAGATTGAATGAAAATTTTCTCTGATGCTAATATAGAtccagtctccc-aaattttaggttccccacgattcttcaaac
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4082569 355 +   4267968 ACTAAACAGAATT-------AAGAGTCAGTC-----ATTTGAAATATAGAAAGCCCTAGAAATACCATTACAAACAACAATAATAACAATAAACCCCCTATTGTATAATAACAAATTGTGCAATAGGTAAGAGATAGATTGTTTAAAGTCTTCTTGGATGTT-GTAAGTTATTTTCAGGGCCAAAAAGG-----------------------------------AAAAACTGCTCTTGCAATTCAAGTTCGGGTATACATTTTGCAAATGCTGGCATGCTCAATGCTTCCTGAAGGAGAGGGAGCTATCCTTATTTTGATCAGTTCAGATTGAATGAAAATTTTCTCTGATGCTAATATAGAtccagtctccc-aaattttaggttccccatgattcttcaaac
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2062967 353 -   2193130 ACTAAACAGAATT-------AAGAGTCAGTC-----ATTTGAAATATAGAAAACCCTAGAAATACCATTACAAACAACAACAATAACAATAAACCCCCTATTGTATAAT---AAATTGTGCAATAGGTAAGAGATAGATTGTTTAAAGTCTTCTTGGAGGTT-GTAAGTTATTTTCAGGGCCAAAAAGT----------------------------------AAAAAACTGCTCTTGGAATTTAAGTTCTGGTATATATTTTGCAAATGCTGGCATGCTCAATGCTTCCTGAAGGAGAGGGAGCTATCCTTATTTTGATCAGTTTAGATTGAATGAAAATTTTCTCTGATGCCGATATAGATCCAGTCTCCC-AAATTTTAGGTTCCCCACAATTCTTCAGAC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s calJac3.chr5              46144912 382 - 159171411 CCTAAACAGAATT-------AAGAGTCAATC-----ATTTGAAATATAGAAAACCCTAGCAATATCATTACAAACAACAACAACA---ATAAATCTTCTATTGTATAATGACACATTGTGCAATAACTAAGACATAGATTATTTAAAGTCTTCTTGGATGTT-GTAAGTTATTTTCAGGGCCAAAAAGTAAaacaacaacaacaacaacaacaaAAGACCCAAAAAAAACTGCTCTTGCAATTCAAGTTCTGGTATATATTTTGCAAATGCTGGAATGCTCAACTCTTCCTGA---AGAAGGAGCTCTCCTTATTTTGATCAGTTT--ATTGAACGAAAATTGTCTCTGTTGCTGATATAAATCCAGTCTCCC-AAATCTTACGTTCCCCACAATTCTTCAGAC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1853936 371 +   3513951 CCTAAACAGAATT-------AAGAGTCAATC-----ACTTGAAATATAGAAAACCCTGGCAATACTATTACAAACAACAACAATAAC-ATAAATCTTCTTTTGTATAATGACACATTGTGCAATAACTAAAAGATAGATTATTTAAAGTCTTCTTGGATGTT-GTAAGTTATTTTCAGGGCCAAAAAGTCaaaca-----------aaaaacaaaaaac----aaaaaacTTCTCTCGCAATTCAAGTTCTGGTGTATATTTTGCAAATGCTGGAATGCTCAACGCTTCCTGA---AGAAGGAGCTATCCTTATTTTGATCAGTTTAGATTGAATGAAAATTGTCTCTGATGCAGATATAAAtccagtctccc-aaatcttaggttccccacaagtcttcagac
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1905077 368 +   1920343 CCTAAACAGAATT-------AAAAGTCAATC-----ATTAGAaatatagaaaaccctagcaataccattataaacaacaacaataacaataaATCTTCTATTGTATAATGACACATTGTGCAATAACTAAGAGATAGATTATTTAAAGTCTTCTTGGATGTT-GTAAGTTATTTTCAGGACCaaaaagtaa---------------aaaaacaaaaaac----aaaaaaCTCCTCTTGCAATTCAAGTTCTGGTATATATTTTGCAAATGCTGGAATGCTCTACGCTTCCTGA---AGAGGGGGCTATCCTTATTTTGATCAGTTTAGATTGAATGAAAATTGTCTCTGATGCTGATATAAAtccagtctccc-aaatcttaggttccccacaattcttcagac
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7019004 370 -   7032639 CCTAAACAGAATT-------AAGAGTCACTC-----ATTCGAaatatagaaaaccctagcaataccactacaaacaacaacaataacaataaATCTTCTATTGTATCATGACACATTGTGCAATAACTAAGAGATAGACTATTTAAAGTCTTCTTAGATGAT-GTAAGTTATTTTCAGGGCCAAAAAGTGAAA-------------AAAACCAAAAAAC----AAAAAACTGCTCTTGCAATTCAAGTTCTGGTATATATTTTGCAAATGCTGGAATGCTCAACGCTTCCTGA---AGAAGGAGCTATCCTTATTTTGATCAGTTTAGATTCAATGAAAATTATCTCTGATGCTGATATAAAtccagtctccc-aaatcttaggttccccacaattcttcagac
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22847089 364 +  28711273 attagacaaaattcactcccacgaatcactcagagaAGTGGAAGTACAGAAAACCCTGGAAATGCCACTATAAACAACAACAACAAC----AACTCTCTATTGTGTGACAACAAATTCTCTAACAGCTGAGAGATAGATCGTCTAAAGTCCTCATGGATGCTAATGCGTTA-TTTCAAGGTCAACAAG-----------------------------------CAAAAAGAGCTCTTGCAACTCAAATGCTGGAATGTACATTGTAAGCACTGGGATGCTCACTACCTCCTGAGAGGGAAGGAAGTATCCTTATCTCAGTCAACTGAAACTTAATGAAAATTATCTGCGAGGCTGATATCCAttcagtctccctgtgtcttaggttccctgtgattcttcaaac
i otoGar3.GL873537          I 927 I 41
e mm10.chr11                22113540 378 - 122082543 I
e canFam3.chr9              21462649 107 +  61074082 I
e manLeu1.NW_012106252v1     2169759 823 +   4244037 I
e dasNov3.JH570468            462571 648 -    852752 I
e colAng1.NW_012122154v1     2192766 828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405 848 -   8458610 I
e macNem1.NW_012014910v1     2100117 822 +  10377808 I
e macFas5.chr16             28043513 823 -  80997621 I
e rheMac8.chr16             30130660 824 -  77216781 I

a score=49784.000000
s hg38.chr17_JH159148v1_alt    20250 15 +     88070 atcaccaataagagt
s panTro5.chr17             16331369 15 +  83181570 atcaccaataagagt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16236252 15 +  83442489 atcaccaataagagt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4082924 15 +   4267968 atcaccaataagagt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2063320 15 -   2193130 ATCACCAATAAGAGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s calJac3.chr5              46145294 15 - 159171411 ATCACCGATAAGAGT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1854307 15 +   3513951 atcaccaataagagt
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1905445 15 +   1920343 atcaccaataagagt
i cebCap1.NW_016107730v1    C 0 I 3045
s aotNan1.NW_018502359v1     7019374 15 -   7032639 atcaccaataagagt
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22113540 378 - 122082543 I
e canFam3.chr9              21462649 107 +  61074082 I
e manLeu1.NW_012106252v1     2169759 823 +   4244037 I
e dasNov3.JH570468            462571 648 -    852752 I
e otoGar3.GL873537          22847453 41 +  28711273 I
e colAng1.NW_012122154v1     2192766 828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405 848 -   8458610 I
e macNem1.NW_012014910v1     2100117 822 +  10377808 I
e macFas5.chr16             28043513 823 -  80997621 I
e rheMac8.chr16             30130660 824 -  77216781 I

a score=20888.000000
s hg38.chr17_JH159148v1_alt    20265 8 +     88070 tcaatgtt
s panTro5.chr17             16331384 8 +  83181570 tcaatgtt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16236267 8 +  83442489 tcaatgtt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4082939 8 +   4267968 tcaatgtt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2063335 8 -   2193130 TCAATGTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s calJac3.chr5              46145309 8 - 159171411 TCAATGTT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1854322 8 +   3513951 tcaatgtt
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7019389 8 -   7032639 tcaatgtt
i aotNan1.NW_018502359v1    C 0 I 281
e mm10.chr11                22113540 378 - 122082543 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e manLeu1.NW_012106252v1     2169759 823 +   4244037 I
e dasNov3.JH570468            462571 648 -    852752 I
e otoGar3.GL873537          22847453 41 +  28711273 I
e colAng1.NW_012122154v1     2192766 828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405 848 -   8458610 I
e macNem1.NW_012014910v1     2100117 822 +  10377808 I
e macFas5.chr16             28043513 823 -  80997621 I
e rheMac8.chr16             30130660 824 -  77216781 I

a score=14636.000000
s hg38.chr17_JH159148v1_alt    20273 13 +     88070 cttggctgggtgt
s panTro5.chr17             16331392 13 +  83181570 cttggctgggtgt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16236275 13 +  83442489 cttggctgggtgt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4082947 13 +   4267968 cttggctgggtgt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2063343 13 -   2193130 CTTggccaggtgc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s calJac3.chr5              46145317 13 - 159171411 TTCACTTGGACGT
i calJac3.chr5              C 0 I 277
s saiBol1.JH378271           1854330 13 +   3513951 ttcacttggatgt
i saiBol1.JH378271          C 0 I 45370
e mm10.chr11                22113540 378 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e manLeu1.NW_012106252v1     2169759 823 +   4244037 I
e dasNov3.JH570468            462571 648 -    852752 I
e otoGar3.GL873537          22847453 41 +  28711273 I
e colAng1.NW_012122154v1     2192766 828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405 848 -   8458610 I
e macNem1.NW_012014910v1     2100117 822 +  10377808 I
e macFas5.chr16             28043513 823 -  80997621 I
e rheMac8.chr16             30130660 824 -  77216781 I

a score=227835.000000
s hg38.chr17_JH159148v1_alt    20286 272 +     88070 ggtggctcacacctgtaatcccagcactttgggaggccagtgtgggcctcccaaagatcatgaggtcaagagatcgagaccatcctggccaacatggtgaaacatgggcatggtggcgggcacctgtaatcccagctactcaggaggctgaagcaggagaattgcttgaaccttggaggtggaggttgcagtgagccgagatcgcaccactgcactccagcctggtgacagagcgagacttatctcaaaaaaaaaaaaaaaaaaaaaaaaaa
s panTro5.chr17             16331405 259 +  83181570 ggtggctcacacctgtaatcccagcactttgggaggccagtgtgggc-------agatcatgaggtcaagagatcgagaccatcctggccaacatggtgaaacatgggcatggtggcgggcacctgtaatcccagctactcaggaggctgaagcaggagaattgcttgaatcttggaggtggaggttgcagtgagccgagatcgcaccactgcactccagcctggtgacagagcgagacttatctcaaaaaaaaaaaaaaaaaaaa------
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16236288 255 +  83442489 ggtggctcacacctgtaatcccagcactttgggaggccagtgtgggc-------agatcatgaggtcaagagatcgagaccatcctggccaacatggtgaaacatgggcatggtggcgggcacctgtaatcccagctactcaggaggctgaagcaggagaattgcttgaatcttggaggtggaggttgcagtgagccgagatcgcaccactgcactccagcctggtgacagagcgagacttatctcaaaaaaaaaaaaaaag----------
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4082960 263 +   4267968 ggtggctcacacctgtaatcccagcactttgggaggccagtgtgggc-------agatcatgaggtcaagagatcgagaccatcctggccaacatggtgaaacatgggcatggtggcgggcacctgtaatcccagctactcaggaggctgaagcaggagaattgcttgaaccttggaggtggaggttgcagtgagccgagatcgcaccactgcactccagcctggtgacagagcgagacttatctcaaaaaaaaaaaaaaaaaaaaaaaa--
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2063356 250 -   2193130 ggtggctcacacccataatcccagcactttgggaggccaatgtgggc-------agatcatgaggtcaagaggtcgagaccatcctggccaacatggtgaaacatgggcatggtggcacgcacctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaaacttggaggtggaggttgcagtgagccaagatcacaccactgcactccagcctggtgacagagtgagacttatctcaaaaaaaaaaa---------------
i nomLeu3.chrUn_GL397460_1  C 0 C 0
e mm10.chr11                22113540 378 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e manLeu1.NW_012106252v1     2169759 823 +   4244037 I
e dasNov3.JH570468            462571 648 -    852752 I
e otoGar3.GL873537          22847453  41 +  28711273 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2192766 828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405 848 -   8458610 I
e macNem1.NW_012014910v1     2100117 822 +  10377808 I
e macFas5.chr16             28043513 823 -  80997621 I
e rheMac8.chr16             30130660 824 -  77216781 I

a score=32437.000000
s hg38.chr17_JH159148v1_alt    20558 39 +     88070 aaaagagc--tcagtgttcaatgttctcacttggaagatgt
s panTro5.chr17             16331664 35 +  83181570 ----gagc--tcagtgttcaatgttctcacttggaagatgt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16236543 35 +  83442489 ----aagc--tcagtgttcaatgttctcacttggaagatgt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4083223 35 +   4267968 ----gagc--tcagtgttcaatgttctcacttggaagatgt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2063606 35 -   2193130 ----GAGC--TCAATgttcaatgttctcacttggaagatgt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s dasNov3.JH570468            463219 41 -    852752 aaaagaacttttaatattgtatttccccCAGCAAaaggtat
i dasNov3.JH570468          I 648 C 0
e mm10.chr11                22113540 378 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e manLeu1.NW_012106252v1     2169759 823 +   4244037 I
e otoGar3.GL873537          22847453 41 +  28711273 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2192766 828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405 848 -   8458610 I
e macNem1.NW_012014910v1     2100117 822 +  10377808 I
e macFas5.chr16             28043513 823 -  80997621 I
e rheMac8.chr16             30130660 824 -  77216781 I

a score=194862.000000
s hg38.chr17_JH159148v1_alt    20597 134 +     88070 ctcagtatctgagaagtagtttgtccacggtcaggaaactagaactcatttaaagaaactaaattctctcctatgctgtttacatccatttggggccactattcccctttccagctgtcc----ttctacacaattct
s panTro5.chr17             16331699 134 +  83181570 ctcagtatctgagaagtagtttgtccacggtcaggaaactagaactcatttaaagaaactaaattctctcctatgctgtttacatccatttggggccactattcccctttccagctgtcc----ttctacacaattct
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16236578 134 +  83442489 ctcagtatctgagaagtagtttgtccacggtcaggaaactagaactcatttaaagaaactaaattctctcctatgctgtttacatccatttggggccactattcccctttccagctgtcc----ttctacagcattct
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4083258 134 +   4267968 ctcagtatctgagaagtagtttgtccacggtcaggaaactagaactcatttaaagaaactaaattctgtcctatgctgtttacatccatttggggccactattcccctttccagctgtcc----ttctacacaattct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2063641 133 -   2193130 ctcagtatctgagaagta-tttgtccaaggtcaggaaactaaaactcatttaaagaaactaaattctctcctatgctgtttacatccatttggggccactattcccctttccagttgtcc----ttctacacaattct
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22847494 132 +  28711273 ctcagtgtccacgaagtagtttgttcaaggtcatg-aactagaaaggactcaaagaaaccacattctctccta-gatgtttacacccacttgggatcatgattcctctttccaattgtgt----tcctacacaattgt
i otoGar3.GL873537          I 41 C 0
s dasNov3.JH570468            463260 133 -    852752 ctcagtatttgaaaagtaatttgtccaaggtcgggaaactagaactcttttagagaaac----ttctctcctaacctg-ttatatccatctgaggccattattctttctttcaaaagttcttttttctacacaattct
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22113540 378 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e manLeu1.NW_012106252v1     2169759 823 +   4244037 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2192766 828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405 848 -   8458610 I
e macNem1.NW_012014910v1     2100117 822 +  10377808 I
e macFas5.chr16             28043513 823 -  80997621 I
e rheMac8.chr16             30130660 824 -  77216781 I

a score=251146.000000
s hg38.chr17_JH159148v1_alt    20731 188 +     88070 gttcaaatattattctttgaatatataagta-at--------attaagaagtcctcctttcttatgtcTTAATCATAATTTT------ACCAGTAGATCTTAAATGAAATCCCTTATATTCTTATCATCACCTATTT--GTGTAGGT--ACAGTTCTTTCATAGTGGACTTAATGTTGGTCTTAGTGAGTGGTTTGTTT---------TATATATT
s panTro5.chr17             16331833 188 +  83181570 gttcaaatattattctttgaatatataagta-at--------attaagaagtcctcctttcttatgtcTTAATCATAATTTT------ACCAGTAGATCTTAAATGAAATCCCTTATATTCTTATCATCACCTATTT--GTGTAGGT--ACAATTCTTTCATAGTGGACTTAATGTTGGTCTTAGTGAGTTGTTTGTTT---------TATATATT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16236712 188 +  83442489 gttcaaatattattctttgaatatataagta-at--------attaagaagtcctcctttcttatgtcTTAATCATAATTTT------ACCAGTAGATCTTAAATGAAATCCCTTATATTCTTATCATCACCTATTT--GTGTAGGT--ACAATTCTTTCATAGTGGACTTAATGTTGGTCTTAGTGAGTTGTTTGTTT---------TATATATT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4083392 188 +   4267968 gttcaaatattattctttgaatatgtaagta-at--------attaagaagtcctcctttcttatgtcTTAATCATAATTTT------ACCAGTAGATCTTAAATGAAATCCCTTATATTCTTATCATCACCTATTT--GTGTAGGT--ACAATTCTTTCATAGTGGACTTAATGTTGGTCTTAGTGAGTGGTTTGTTT---------TATATATT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2063774 183 -   2193130 gttcaaatatgattc-tTGAATATA----TA-AT--------ATTGAGAAGTCCTCTTTTCTTATGTCTTCATCATAATTTT------ACTAGTAGATCTTAAATGAAATCCTTTATATTATTTTCATCACCTATTT--GTGTAGGA--ACGATTCTTTCATAGTGGACTTAACGTTGGTCTTAGTGAGTGCTTTGTTT---------TATATATT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22847626 182 +  28711273 gttcaaatattatcctttaaacatgtaagta-at--------attgagaagtccccctttcttgtg------tcatAATTTT------GCCAATAGATCTTAAACGAGATCTTAAGCATTCTTATTATCACGTATTT--GTGTGGGG--AAGAT--ATAAATATGAGACTTA-------TCTTACTGTGTTTTATATCTATACATGCGTATGTATA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22113918 176 - 122082543 gctCACATGTTAGTTTTT-AATACACAAGTA-AC--------ATTATGTAGAC-----TCCTTAGGCCATATTAAAGATTTTTTTCTAGTCAGTGGACCTTCATTGAAATCTTACTTCTTCCTTTACTCTCCTATTTAGGTGTGGGC--A-GATTGTCTCCTAGGGAATTTGCTTTGGCGTTTAATGGATTGTT----------------------
i mm10.chr11                I 378 C 0
s dasNov3.JH570468            463393 197 -    852752 gttcaaatatcacccctggaatacatgagtatatggtaactagttgagaattcctcttttcttatgtcataattaaaattat------accaATGGATCTTAAG-GAAACCTTAATTCTTTTTATAATTGCCTGCTT--GTGTAGGGGAAAAATTCTCTCACAG-GAATTTGTTTTTGGTCTTAGTGAGCTGTTTGTTT---------TATATATT
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e manLeu1.NW_012106252v1     2169759 823 +   4244037 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2192766 828 +   4569836 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405 848 -   8458610 I
e macNem1.NW_012014910v1     2100117 822 +  10377808 I
e macFas5.chr16             28043513 823 -  80997621 I
e rheMac8.chr16             30130660 824 -  77216781 I

a score=7341.000000
s hg38.chr17_JH159148v1_alt    20919 3 +     88070 AAG
s panTro5.chr17             16332021 3 +  83181570 AAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16236900 3 +  83442489 AAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4083580 3 +   4267968 AAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2063957 3 -   2193130 AAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s colAng1.NW_012122154v1     2193594 3 +   4569836 aAG
i colAng1.NW_012122154v1    I 828 C 0
s otoGar3.GL873537          22847808 3 +  28711273 AAA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22114094 2 - 122082543 -AG
i mm10.chr11                C 0 C 0
s dasNov3.JH570468            463590 3 -    852752 AAA
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e manLeu1.NW_012106252v1     2169759 823 +   4244037 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e chlSab2.chr16             64929396 1467 +  75148670 I
e cerAty1.NW_012006043v1     1985405 848 -   8458610 I
e macNem1.NW_012014910v1     2100117 822 +  10377808 I
e macFas5.chr16             28043513 823 -  80997621 I
e rheMac8.chr16             30130660 824 -  77216781 I

a score=110492.000000
s hg38.chr17_JH159148v1_alt    20922 17 +     88070 TATACTTATGCTTTGCT
s panTro5.chr17             16332024 17 +  83181570 TATACTTATGCTTTGCT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16236903 17 +  83442489 TATACTTATGCTTTGCT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4083583 17 +   4267968 TATACTTATGCTTTGCT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2063960 17 -   2193130 TATACTTGTGCTTTGCT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30131484 17 -  77216781 TATACTTATACTTTGCT
i rheMac8.chr16             I 824 I 2
s macNem1.NW_012014910v1     2100939 17 +  10377808 TATACTTATGCTTTGCT
i macNem1.NW_012014910v1    I 822 I 2
s cerAty1.NW_012006043v1     1986253 17 -   8458610 TATACTTATGCTTTGCT
i cerAty1.NW_012006043v1    I 848 C 0
s chlSab2.chr16             64930863 17 +  75148670 TATACTTATGCTTTGCT
i chlSab2.chr16             I 1467 C 0
s manLeu1.NW_012106252v1     2170582 17 +   4244037 TATACTTATGCTTTGCT
i manLeu1.NW_012106252v1    I 823 C 0
s colAng1.NW_012122154v1     2193597 17 +   4569836 TATACTTATGCTTTGCT
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22847811 17 +  28711273 TATATTTATGCTTTGCT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22114096 17 - 122082543 TATATGTATGCTCTGTT
i mm10.chr11                C 0 C 0
s dasNov3.JH570468            463593  9 -    852752 CATATTTGT--------
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e macFas5.chr16             28043513 823 -  80997621 I

a score=2449648.000000
s hg38.chr17_JH159148v1_alt    20939 347 +     88070 ATATTTATTACTATTGGGCACTTAAAGGGGAATGCTTGGAAAAAACTGGGTTGATTTTGCTAGGAATCAACCTTAAA-GGGCAGAAGATTATTGAAATTTGACCCTTTCCATCTTAATCTTTGTTCCAAGCAGGAATCTGACTGGGGCTGAAGAGCTTGGTTTTTACCTTGTCCTTATCTTGCATAAGGAATGCTTTTGTTTAGAAAGAGGATCTGAAGGTTTTCTGGTCTGGGACAGGCCACAGCCACTGTGGAACGCAGTGATAATAAAGGATGGATAAGGCTTGCATGC---TTTCCTTAGCGAGTTTATACAATCTATCCAATTTAGG-CTTTCTTGATTTATATTCT
s panTro5.chr17             16332041 347 +  83181570 ATATTTATTACTATTGGGCACTTAAAGGGGAATGCTTGGAAAAAACTGGGTTGATTTTGCTAGGAATCAACCTTAAA-GGGCAGAAGATTATTGAAATTTGACGCTTTCCATCTTAATCTTTGTTCCAAGCAGGAATCTGACTGGGGCTGAAGAGCTTGGTTTTTACCTTGTCCTTATCTTGCATAAGGAATGCTTTTGTTTAGAAAGAGGATCTGAAGGTTTTCTGGTCTGGGACAGGCCACAGCCACTGTGGAACGCAGTGATAATAAAGGATGGATAAGGCTTGCATGC---TTTCCTTAGCGAGTTTATACAATCTATCCAATTTAGG-CTTTCTTGATTTGTATTCT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16236920 347 +  83442489 ATATTTATTACTATTGGGCACTTAAAGGGGAATGCTTGGAAAAAACTGGGTTGATTTTGCTAGGAATCAACCTTAAA-GGGCAGAAGATTATTGAAATTTGACCCTTTCCATCTTAATCTTTGTTCCAAGCAGGAATCTGACTGGGGCTGAAGAGCTTGGTTTTTACCTTGTCCTTATCTTGCATAAGGAATGCTTTTGTTTAGAAAGAGGATCTGAAGGTTTTCTGGTCTGGGACAGGCCACAGCCACTGTGGAACGCAGTGATAATAAAGGATGGATAAGGCTTGCATGC---TTTCCTTAGCGAGTTTATACAATCTATCCAATTTAGG-CTTTCTTGATTTGTATTCT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4083600 347 +   4267968 ATATTTATTACTATTGGGCACTTAAAGGGGAATGCTTGGAAAAAACTGGGTTGATTTTGCTAGGAATCAACCTTAAA-GGGCAGAAGATTATTGAAATTTGACCCTTTCCATCTCAATCTTTGTTCCAAGCAGGAATCTGACTGGGGCTGAAGAGCTTGGTTTTTACCTTGTCCTTATCTTGCATAAGGAATGCTTTTGTTTAGAAAGAGGATCTGAAGGTTTTCTGGTCTGGGACAGGCCACAGCCACTGTGGAACACAGTGATAATAAAGGATGGATAAGGCTTGCATGC---TTCCCTTAGCGAGTTTATACAATCTATCCAATTTAGG-CTTTCTTGATTTATATTCT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2063977 347 -   2193130 GTATTTATTACTATTGGGCACTTAAAGGGGAATGCTTGGAAAGAACTGGGTTGATTTTGCTAGGAATCAACCTTAAA-GGGTAGAAGATTATTGAAATTTGACCCTTTCCGTCTTAATCTTTGTTCCAAGCAGGAATCTTACTGGGGCTGAAGAGCCTGGTTTTTACCTCGTCCTTATCTTGCATAAGGAATGCTTTTGTTTAGAAAGAGGATCTGAAGGTTTTCTGGTCTGGGACAGGTCACAACCACTGTGGAACACAGTGATATTAAAGGATGGATAAGGCTTGCATTC---TCTCCTTAGTGAGTTTATACAATCTTTCCATTTTAGG-CTTTCTTGATTTATATTCT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30131503 347 -  77216781 ATATTTATTACTATTGGTCACTTAAAAGAGATTGCTTGGAAAGAACTGGATTGATTTTGCTAGGAATCAACCTTAAA-GGGTAGAAGATTGTTGAAATTTGACCCTTTTAGTCTTAATCTTTGTTCCAAGCAGGAATCTGACTGGGGCTGAAGAGCTTGGTTTTTACCTTGTCCTTATCTTGCATAAGGAATGCTTTTGTTTAGGAAGAGGATCTGAAGGTTTTCTGGTCTGGGATAGGCCACAACCACTGTGGAACACAGTGATATTGAAGGATGGATAAGGCTTGCATGC---TTTCCTTAGCGAGTTCATACAATCTATGCAATTTAGG-CTTTCTTGATTTATATTCT
i rheMac8.chr16             I 2 C 0
s macFas5.chr16             28044336 347 -  80997621 ATATTTATTACTATTGGTCACTTAAAAGAGATTGCTTGGAAAGAACTGGATTGATTTTGCTAGGAATCAACCTTAAA-GGGTAGAAGATTGTTGAAATTTGACCCTTTCAGTCTTAATCTTTGTTCCAAGCAGGAATCTGACTGGGGCTGAAGAGCTTGGTTTTTACCTTGTCCTTATCTTGCTTAAGGAATGCTTTTGTTTAGGAAGAGGATCTGAAGGTTTTCTGGTCTGGGATAGGCCACAACCACTGTGGAACACAGTGATATTGAAGGATGGGTAAGGCTTGCATGC---TTTCCTTAGCGAGTTTATACAATCTATGCAATTTAGG-CTTTCTTGATTTATATTCT
i macFas5.chr16             I 823 C 0
s macNem1.NW_012014910v1     2100958 347 +  10377808 ATATTTATTACTATTGGTCACTTAAAAGAGATTGCTTGGAAAGAACTGGATTGATTTTGCTAGGAATCAACCTTAAA-GGGTAGAAGATTGTTGAAATTTGACCCTTTCAGTCTTAATCTTTGTTCCAAGCAGGAATCTGACTGGGGCTGAAGAGCTTGGTTTTTACCTTGTCCTTATCTTGCATAAGGAATGCTTTTGTTTAGGAAGAGGATCTGAAGGTTTTCTGGTCTGGGATAGGCCACAACCACTGTGGAACACAGTGATATTGAAGGATGGATAAGGCTTGCATGC---TTTCCTTAGCGAGTTTATACAATCTATGCAATTTAGG-CTTTCTTGATTTATATTCT
i macNem1.NW_012014910v1    I 2 C 0
s cerAty1.NW_012006043v1     1986270 347 -   8458610 ATATTTATTACTATTGGTCACTTAAAAGGGATTGCTTGGAAAGAACTGGATTGATTTTGCTAGGAATCAACCTTAAA-GGGTAGAAGATTGTTGAAATTTGACCCTTTCAGTCTTAATCTTTGTTCCAAGCAGGAATCTGACTGGGGCTGAAGAGCTTGGTTTCTACCTCGTCCTTATCTTGCATAAGGAATGCTTTTGTTTAGGAAGAGGATCTGAAGGTTTTCTGTTCTGGGATAGGCCACAACCACTGTGGAACACAGTGATATTGAAGGATGGATAAGGCTTGCATGC---TTTCCTTAGTGAGTTTATACAATCTATGCAATTTAGG-CTTTCTTGATTTATATTCT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64930880 347 +  75148670 ATATTTATTACTATTGGTCACTTAAAAGGGATTGCTTGGAAAGAACTAGATTGATTTTGCTAGGAATCAACCTTAAA-GGGTAGAAGATTGTTGAAATTTGACCCTTTCAGTCTTAATCTTTGTTCCAAGCAGGAATCTGACTGGGGCTGCAGAGCTTGGTTTTTACCTCGTCCTTATCTTGCATAAGGAATGCTTTTGTTTAGGAAGAGGATCTGAAGGGTTTCTGGTCTGGGATAGGCCACAACCACTGTGGAACACAGTGATATTGAAGGATGGATAAGGCTTGCATGC---TTTCCTTAGCGAGTTTATACAATCTATGCAATTTAGG-CTTTCTTGATTTATATTCT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2170599 347 +   4244037 ATATTTATTACTATTGGTCACTTAAAAGGGATTGCTTGGAAAGAACTGGATTGATTTTGCTAGGAATCAACCTTAAA-GGGTAGAAGATTGTTGAAATTTGACCCTTTCAGTCTTAATCTTTGTTCCAAGCAGGAATCTGACTGGGGCTGAAGAGCTTGGTTTCTACCTCGTCCTTATCTTGCATAAGGAATGCTTTTGTTTAGGAAGAGGATCTGAAGGTTTTCTGGTCTGGGATAGGCCACAACCACTGTGGAACACAGTGATATTGAAGGATGGATAAGGCTTGCATGC---TTTCCTTAGCAAGTTTATACAATCTATGCAATTTAGG-CTTTCTTGATTTATATTCT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2193614 347 +   4569836 ATATTTATTATTATTGGGCACTTAAAAGGGAATGCTTGGAAACAACTGGATTGATTTTGCTAGGAATCAACCTTAAA-GGGTAGAAGATTGTTGAAATTTGACCCTTTCAGTCTTAATCTTTGCTCCAAGCAGGAATCTGACTGGGGCTGAAGAGCTTGGTTTTTACCTCGTCCTTATCTTGCATAAGGAATGCTTTTGTTTAGGAAGAGGATCTGAAGATTTTCTGGTCTGGGATAGGCCACAACCACTGTGGAACACAGTGATATTGAAGGATGGATAAGGCTTGCATGC---TTTCCTTAGAGAGTTTATACAATCTATCCAATTTAGG-CTTTCTTGATTTATATTCT
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22847828 330 +  28711273 AGAGCTATTACTATTGGGCACTTAAAGGGGAATTCTTGGGAAGAACTGGGCTGACTTTTCCAGGAATCAACCTGAAG-GGATAGATGATCTTGGAAATGTGCCCCTTTCCCTCTTAATCTTTGTTCTAAGCAGGAATCTTACTAGGGACAAAGAGCTTGTCTTTTATCTCCTCCTTG-CTTGGATAGAGAATGTTTTTGTTTAGAAAGCAGATCTGA----------------GACAGGTTTCAACCACTGT-GAACCCAGGGGTAATAAGGGACAGGTAAGACGTGCATGC---TTTCCTTATCGAGTTTACGTTATCTTTACTGTTTAGGATTTTTTTGATTTATGCTTC
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22114113 317 - 122082543 ATAGATATTATTAATGCT-----------GGATGCTTAGGAAGAACTGGGTTAATTCTGCTGAGAATCAGCCTCAAAGGGGTCCAACGTCGTTGAAACTTATTCCTGTCTCTCTCCATCTT------AAGGAAGAATCTGCCTTAAGATAAAGAGCTTGAATCCTGCCTTCTGC-AGTCTCAGCTGAGGAATGCTTTTGTTTAGAAGG--GGTCCGCGGGCTCTCTGG-CCAGGTCAGGTTACAACCACCA-GGAATACAGAGATAATAAAAGAAGGCAAGAG--TGTGTGT---CCTCTTTA------TCAAACTATTTATACAACTCAGG-ACTTCCTG-CTTATGTTTT
i mm10.chr11                C 0 I 529
s dasNov3.JH570468            463602 290 -    852752 ------------------------------------CAGATAGGACTGGGTTAACTTTGCTGGGAACCAGCC------G----------TATTGAAACTCGTCTCTCTCCATCT-GATTTTTGTTTCAAGCAGGACCTGGAATGACACAGAAGAGCCTGGCTCCTATCAAG----GGGTTTGTGGAGGGGGTGCTTTTGTTTGGAGAGAGGATCTGGAGACTTCCTGACTAGGGTCGGGTTACAACCTCTGT-GAGTGAGAGGATGATAAGGGATGGGTGACTCAGGCAGGCATATTTTCTTATCTAGTTAACACTGC---TCCAATTTAGG-CATTTCTGATTTATGATTT
i dasNov3.JH570468          C 0 I 8
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I

a score=132012.000000
s hg38.chr17_JH159148v1_alt    21286 30 +     88070 AGA-------ATAATGTCT-ATATTTGTTTATTTAAGT
s panTro5.chr17             16332388 30 +  83181570 AGA-------ATAATGTCT-ATATTTGTTTATTTAAGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16237267 30 +  83442489 AGA-------ATAATGTCT-ATATTTGTTTATTTAAGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4083947 30 +   4267968 AGA-------ATAATGTCT-ATATTTGTTTATTTAAGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2064324 30 -   2193130 AGA-------ATAATGTCT-ATATTTGTTTATTTAAGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30131850 26 -  77216781 AGA-------ATAATGTCT-ATA----TTTATTTAAGT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28044683 26 -  80997621 TGA-------ATAATGTCT-ATA----TTTATTTAAGT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2101305 26 +  10377808 AGA-------ATAATGTCT-ATA----TTTATTTAAGT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1986617 26 -   8458610 AGA-------ATAATGTCT-ATA----TTTATTTAAGT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64931227 26 +  75148670 AGA-------ATAATGTCT-ATA----TTTATTTAAGT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2170946 22 +   4244037 AGA-------ATAATGTCT-A--------TATTTAAGT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2193961 26 +   4569836 AGA-------ATAATGTCT-ATA----TTTATTTAAGT
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22848158 38 +  28711273 GGACATGGAGAAAGAATCTGATAATGGTCCATTTGGGT
i otoGar3.GL873537          C 0 I 282
s dasNov3.JH570468            463900 30 -    852752 AGG-------ATGAGTCCG-GTAATGGTCTGTTTTGGT
i dasNov3.JH570468          I 8 C 0
e mm10.chr11                22114430 529 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I

a score=6228.000000
s hg38.chr17_JH159148v1_alt    21316 1 +     88070 G
s panTro5.chr17             16332418 1 +  83181570 G
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16237297 1 +  83442489 G
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4083977 1 +   4267968 G
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2064354 1 -   2193130 A
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30131876 1 -  77216781 G
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28044709 1 -  80997621 G
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2101331 1 +  10377808 G
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1986643 1 -   8458610 G
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64931253 1 +  75148670 G
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2170968 1 +   4244037 G
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2193987 1 +   4569836 G
i colAng1.NW_012122154v1    C 0 C 0
s dasNov3.JH570468            463930 1 -    852752 G
i dasNov3.JH570468          C 0 I 2508
e mm10.chr11                22114430 529 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e otoGar3.GL873537          22848196 282 +  28711273 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I

a score=324471.000000
s hg38.chr17_JH159148v1_alt    21317 55 +     88070 GGAATCATTTTAATTTTATTTCTGA-TTTTTAATCCTATATTTTCTGCATTAGTTA
s panTro5.chr17             16332419 55 +  83181570 GGAATCATTTTAATTTTATTTCTGA-TTTTTAATCCTATATTTTCTGCATTAGTTA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16237298 55 +  83442489 GGAATCATTTTAATTTTATTTCTGA-TTTTTAATCCTATATTTTCTGCATTAGTTA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4083978 55 +   4267968 GGAATCATTTTAATTTTATTTCTGA-TTTTTAATCCTATATTTTCTGCATTAGTTA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2064355 55 -   2193130 GGAATCATTTTAATTTTATTTCTGA-TTTTTAATCCTATATTTTCTACATAAGTTA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30131877 56 -  77216781 GGAATCATTTTAATTTTATTTCTGATTTTTTATTCCTGTATTTTCGACATAAGTTA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28044710 56 -  80997621 GGAATCATTTTAATTTTATTTCTGATTTTTTATTCCTGTATTTTCGACATAAGTTA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2101332 56 +  10377808 GGAATCATTTTAATTTTATTTCTGATTTTTTATTCCTGTATTTTCGACATAAGTTA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1986644 56 -   8458610 GGAATCATTTTAATTTTATTTCTGATTTTTTATTCCTGTATTTTCGACATAAGTTA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64931254 56 +  75148670 GGAATCATTTTAATTTTATTTCTGATTTTTTATTCCTGTATTTTTGACATAAGTTA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2170969 56 +   4244037 GGAATCATTTTAATTTTGTTTCTGATTTTTTATTCCTGTATTTTCGACATAAGTTA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2193988 56 +   4569836 GGAATCATTTTAATTTTATTTCTGATTTTTTATTCCTATATTTTCTACATAAGTTA
i colAng1.NW_012122154v1    C 0 C 0
s dasNov3.JH570468            466439 52 -    852752 GGAATCA---TACTTTTATTTCTAG-TTCTTAATCTTATATTTTCTATATAAGTTA
i dasNov3.JH570468          I 2508 I 454
e mm10.chr11                22114430 529 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e otoGar3.GL873537          22848196 282 +  28711273 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I

a score=48983.000000
s hg38.chr17_JH159148v1_alt    21372 8 +     88070 TCTCCAAA
s panTro5.chr17             16332474 8 +  83181570 CCTCCAAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16237353 8 +  83442489 CCTCCAAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4084033 8 +   4267968 CCTCCAAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2064410 8 -   2193130 CCTCCAAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30131933 8 -  77216781 CCTCCAAA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28044766 8 -  80997621 CCTCCAAA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2101388 8 +  10377808 CCTCCAAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1986700 8 -   8458610 CCTCCAAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64931310 8 +  75148670 CCTCCAAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2171025 8 +   4244037 CCTCCAAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2194044 8 +   4569836 CCTCCAAA
i colAng1.NW_012122154v1    C 0 C 0
e mm10.chr11                22114430 529 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e dasNov3.JH570468            466491 454 -    852752 I
e otoGar3.GL873537          22848196 282 +  28711273 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I

a score=169646.000000
s hg38.chr17_JH159148v1_alt    21380 27 +     88070 CCTACAATTTAATTAAATTTATCCCAG
s panTro5.chr17             16332482 27 +  83181570 CCTACAATTTAATTAAATTTATCCCAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16237361 27 +  83442489 CCTACAATTTAATTAAATTTATCCCAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4084041 27 +   4267968 CCTACAATTTAATTAAATTTATCCCAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2064418 27 -   2193130 CCTACAATGTAATTAAATTTATCCCAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30131941 27 -  77216781 TCTACAATTTAATTAAACTTATCCCAG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28044774 27 -  80997621 TCTACAATTTAATTAAACTTATCCCAG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2101396 27 +  10377808 TCTACAATTTAATTAAACTTATCCCAG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1986708 27 -   8458610 TCTACAATTTAATTAAATTTATCCCAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64931318 27 +  75148670 TCTACAATTTAATTAAATTTATCCCAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2171033 27 +   4244037 TCTACAATTTAATTAAACTTATCCCAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2194052 27 +   4569836 TCTGCAATTTAATTAAATTTATCCCAG
i colAng1.NW_012122154v1    C 0 C 0
s dasNov3.JH570468            466945 27 -    852752 CCTTAAACTAAATTAACTCTATCCCAG
i dasNov3.JH570468          I 454 C 0
e mm10.chr11                22114430 529 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e otoGar3.GL873537          22848196 282 +  28711273 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I

a score=1226209.000000
s hg38.chr17_JH159148v1_alt    21407 186 +     88070 CGTTTGATCTTAGAATA-----------------------------------------TAACATTCATTCTTGTTTCCTGCATATTCACAAGAAAAATCCCAAGCTGTGTTATCTGAACCATCTGTCAGA---AGAGGTTCCAAGGAGAAGGTGTCCAGTGATGAAAGA---------GCCGAGTTTTCCCTATTTTGAATGTAG----GAAACA----CAGGCTGGTTTTTCTGAAATTAATCCCT
s panTro5.chr17             16332509 186 +  83181570 CGTTTGATCTTAGAATA-----------------------------------------TAACATTCATTCTTGTTTCCTGCATATTCACAAGAAAAATCCCAAGCTGTGTTATCTGAACCATGTGTCAGA---AGAGGTTCCAAGGAGAAGGTGTCCAGTGATGAAAGA---------GCCGAGTTTTCCCTATTTTGAATGTAG----GAAACA----CAGGCTGGTTTTTCTGAAATTAGTCCCT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16237388 186 +  83442489 CGTTTGATCTTAGAATA-----------------------------------------TAACATTCATTCTTGTTTCCTGCATATTCACAAGAAAAATCCCAAGCTGTGTTATCTGAACCATGTGTCAGA---AGAGGTTCCAAGGAGAAGGTGTCCAGTGATGAAAGA---------GCCGAGTTTTCCCTATTTTGAATGTAG----GAAACA----CAGGCTGGTTTTTCTGAAATTAGTCCCT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4084068 186 +   4267968 TGTTTGATCTTAGAATA-----------------------------------------TAACATTCATTCTTGTTTCCTGCATATTCACAAGAAAAATCCCAAGCTTTGTTATCTGAACCATGTGTCAGA---AGAGGTTCCAAGGAGAAGGTTTCCAGTGATGAAAGA---------GCCGAGTTTTCCCTATTTTGAATGTAG----GAAACA----CAGGCTGGTTTTTCTGAAATTAATCCCT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2064445 186 -   2193130 CATTTGATCTTAGAATA-----------------------------------------TAGCATTCATTCTTGTTTCCTGCATATTCACAAGAAAAATCCCAAGCTGTGTTATCTGAACCATGTGTCAGA---AGAGGTTCCAGGGAGAAGGTTTCCAGTGATGAAAGA---------GCCGAGTTTTCCCTACTTTGAATGTAG----GAAACA----CAGGCTGGTTTTTCTGAAATTAATCCCT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30131968 186 -  77216781 CTTTTGATCTTAGAATA-----------------------------------------TAACATTCATTCTTATTTCCAGCATATCCACAAGAAAAACCCCAAGCTGCCTTATCTGAACCATGTGTCAGA---AGAGGTTCTAAGGAGAAGGTTTCCAATGATGAAAGA---------GCCGAGCTTTCCCTACTTTGAATGGAG----GAAACA----CAGGCTGGTTTTTCTGAAATTAATCCCT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28044801 186 -  80997621 CTTTTGATCTTAGAATA-----------------------------------------TAACATTCATTCTTATTTCCAGCATATCCACAAGAAAAACCCCAAGCTGCCTTATCTGAACCATGTGTCAGA---AGAGGTTCTAAGGAGAAGGTTTCCAATGATGAAAGA---------GCCGAGCTTTCCCTACTTTGAATGGAG----GAAACA----CAGGCTGGTTTTTCTGAAATTAATCCCT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2101423 186 +  10377808 CTTTTGATCTTAGAATA-----------------------------------------TAACATTCATTCTTATTTCCAGCATATCCACAAGAAAAACCCCAAGCTGCCTTATCTGAACCATGTGTCAGA---AGAGGTTCTAAGGAGAAGGTTTCCAATGATGAAAGA---------GCCAAGCTTTCCCTACTTTGAATGGAG----GAAACA----CAGGCTGGTTTTTCTGAAATTAATCCCT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1986735 186 -   8458610 CTTTTGATCTTAGAACA-----------------------------------------TAACATTCATTCTTGTTTCCAGCATATCCACAAGAAAAACCTCAAGCTGCGTTATCTGAACTATGTGTCAGA---AGAGGTTCTAAGGAGAAGGTTTCCAGTGATGAAAGA---------GCCGAGCTTTCCCTACTTTGAATGGAG----GAAACA----CAGGCTGGTTTTTCTGAAATTAATCCCT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64931345 186 +  75148670 CTTTTGATCTTAGAATA-----------------------------------------TAACGTTCATCCTTGTTTCCAGCATATCCACAAGAAAAACCCCAAGCTGCGTTACCTGAACCATGTGTCAGA---AGAGGTTCTAAGGAGAAGGTTTCTAGTGATGAAAGA---------GCCGAGCTTTCCCTACTTTGAATGGAG----GAAACA----CAGGCTGGTTTTTCTGAAATTAATCCCT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2171060 186 +   4244037 CTTTTGATCTTAGAATA-----------------------------------------TAACATTCATTCTTATTTCCAGCATATCTACAAGAAAAACCCCAAGCTGTGTTATCTGAACCATGTGTCAGA---AGAGGTTCTAAGGAGAAGTTTTCCAATGATGAAAGA---------GCCGAGCTTTCCCTACTTTGAATGGAG----GAAACA----CAGGCTGGTTTTTCTGAAATTAATCCCT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2194079 186 +   4569836 CTTTTGATCTTAGAATA-----------------------------------------TAACAGTCATTCTTGTTTCCAGCATATCCACAAGAAAAACCCCAAGCTGCGTTATCTGAACCATGTGTCAGA---AGAGGTTCTAAGGAGAAGTTTTCCAGTGATGAAAGA---------GCCGAGCTTTCCCTACTTTGAATGGAG----GAAACA----CAGGCTGGTTTTTCTGAGATTAATCCCT
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22848478 229 +  28711273 AATTTGACCTTGAAATAACCTGCTGTCACTGCTGAAGATTTTCTCATTCTCCTTAGATTAACCTTCGTCCTCATTTCTAGCACATACATAATAAATATCTCAAGAGGAATTTTCC-AACCAGGTGCCAAA---AGACATTCCCAGGAGAAGGTTTCTACTGATGAAAGA---------GCTGAGCTTTCTCTGCTTTTAATGGAGAACCAAGTCA----GTGGCTGG-TTTTCTGAAATTAACCCCT
i otoGar3.GL873537          I 282 C 0
s dasNov3.JH570468            466972 198 -    852752 AGTTTGGGTTTGGAGTC-----------------------------------------AAACATTCATTCTTGTTTCAGGCACAAACACAAGGAAAATCCAAATTTGCACTTTCTGAACCATGTGCCATGCTTGAAGATCCCAAAG---AGGTTTCCTATTATAAAAAACAAAACAACACTGTGTTTTCTCTACTGTGAAGGGAG----GAAACAGACTGAGACCAG-TTTACTGAAATTAATCCCT
i dasNov3.JH570468          C 0 I 911
e mm10.chr11                22114430 529 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I

a score=215268.000000
s hg38.chr17_JH159148v1_alt    21593 30 +     88070 GTTCTTTCCATAACAATATTACATTGCACT
s panTro5.chr17             16332695 30 +  83181570 GTTCTTTCCATAACAATATTACATTGCACT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16237574 30 +  83442489 GTTCTTTCCATAACAATATTACATTGCACT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4084254 30 +   4267968 GTTCTTTCCATAACAATATTACATTGCACT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2064631 30 -   2193130 GTTCTTTCCATAACAATATTACATTGCACT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30132154 30 -  77216781 GTTCTTTCCATAACAATATTACATTGCACT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28044987 30 -  80997621 GTTCTTTCCATAACAATATTACATTGCACT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2101609 30 +  10377808 GTTCTTTCCATAACAATATTACATTGCACT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1986921 30 -   8458610 GTTCTTTCCATAACAATATTACATTGCACT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64931531 30 +  75148670 GTTCTTTCCATAACAATATTACATTGCACT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2171246 30 +   4244037 GTTCTTTCCATAACAATATTACATTGCACT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2194265 30 +   4569836 GTCCTTTCTATAACAATATTACATTGCACT
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22848707 30 +  28711273 GTTCTCTCTGTAACAGTGTTGTGTTGCACT
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            468081 25 -    852752 GTTCTTTCCCTATCAATACTTCACT-----
i dasNov3.JH570468          I 911 C 0
e mm10.chr11                22114430 529 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I

a score=519767.000000
s hg38.chr17_JH159148v1_alt    21623 65 +     88070 AGAGGGCCTAACCTAGGGATTGTCTTTTATGTGTAATTCAAATTCTAAGAAGAATAAATTAATTA
s panTro5.chr17             16332725 65 +  83181570 AGAGAGCCTAACCTAGGGATTGTCTTTTATGTGTAATTCAAATTCTAAGAAGAATAAATTAATTA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16237604 65 +  83442489 AGAGAGCCTAACCTAGGGATTGTCTTTTATGTGTAATTCAAATTCTAAGAAGAATAAATTAATTA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4084284 65 +   4267968 AGAGGGCCTAAGCTAGGGATTGTCTTTTCTGTGTAATTCAAATTCTAAGAAGAATAAATTAACTA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2064661 65 -   2193130 AGAGGGCCTAATCTAGGGATTGTCTTTTATGTGTAATTCAAATTCTAAGAAGAATAAATTCACTA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30132184 65 -  77216781 AGAGGGCCTAACCTAGGGATTGTCTTTTATGTGTAATTCAAATTCTAAGAAGAATAAATTAACTA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28045017 65 -  80997621 AGAGGGCCTAACCTAGGGATTGTCTTTTATGTGTAATTCAAATTCTAAGAAGAATAAATTAACTA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2101639 65 +  10377808 AGAGGGCCTAACCTAGGGATTGTCTTTTATGTGTAATTCAAATTCTAAGAAGAATAAATTAACTA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1986951 65 -   8458610 AGAGGGCCTAACCTAGGGATTGTCTTTTATGTGTAATTCAAATTCTAAGAAGAATAAATTAACTA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64931561 65 +  75148670 AGAGGGCCTAACCTAGGGATTGTCTTTTATGTGTAATTCAAATTCTAAGAAGAATAAATGAACTA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2171276 65 +   4244037 AGAGGGCCTAACCTAGGGATTGTCTTTTATGTGTAATTCAAATTCTAAGAAGAATAAATTAACTA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2194295 65 +   4569836 AGAGGGCCTAACCTACGGATTGTCTTTTATGTGTAATTCAAATTCTAAGAAGAATAAATTAACTA
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22848737 65 +  28711273 ACAGAGCTTAACATAGGGATTGTCTTTTCTGTTTGATTCAAATCATAAGGAGAATAAATTCACTA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22114959 65 - 122082543 AGAGAAGCCAACCCAGAGATGATCTTTCATGTTTGATTTAAATGGTAAGAACACTAATCTAATTA
i mm10.chr11                I 529 C 0
s dasNov3.JH570468            468106 65 -    852752 AGAGGATCTAACTTAGGGATTGTCTTCTATGTTAAACTCAAATCATAAGAAGAGGAATTTTGTTA
i dasNov3.JH570468          C 0 I 28207
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I

a score=67120.000000
s hg38.chr17_JH159148v1_alt    21688 11 +     88070 -----TAGTCCAATCA
s panTro5.chr17             16332790 11 +  83181570 -----TAGTCCAATCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16237669 11 +  83442489 -----TAGTCCAATCA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4084349 11 +   4267968 -----TAGTCCAATCA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2064726 11 -   2193130 -----TAGTCCAATCA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30132249 11 -  77216781 -----TAGTCCAGTCA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28045082 11 -  80997621 -----TAGTCCAGTCA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2101704 11 +  10377808 -----TAGTCCAGTCA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1987016 11 -   8458610 -----TAGTCCAGTCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64931626 11 +  75148670 -----TAGTCCAGTCA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2171341 11 +   4244037 -----TAGTCCAGTCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2194360 11 +   4569836 -----TAGTCCAGTCA
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22848802 11 +  28711273 -----TAGTGTAATTG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22115024 11 - 122082543 -----TGGTAGAGTCT
i mm10.chr11                C 0 C 0
s dasNov3.JH570468            344938 16 +    852752 TGAGGACATGTAAGCA
i dasNov3.JH570468          n 28207 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21462649 107 +  61074082 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I

a score=610101.000000
s hg38.chr17_JH159148v1_alt    21699 87 +     88070 CCACTATAACTCACAGCA-GGGAGG---AAGGAAGAAGTATG--TGGTG----TGTCACTCATAACAGGTTGGTGATGTTAGATTATAATTAGATGA
s panTro5.chr17             16332801 87 +  83181570 CCACTATAACTCACAGCA-GGGAGG---AAGGAAGAAGTATG--TGGTG----TGTCACTCATAGCAAGTTGGTGATGTTAGATTATAATCAGATGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16237680 87 +  83442489 CCACTATAACTCACAGCA-GGGAGG---AAGGAAGAAGTATG--TGGTG----TGTCACTCATAGCAAGTTGGTGATGTTAGATTATAATCAGATGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4084360 87 +   4267968 CCACTATAACTCACAGCA-GGGAGG---AAGGAAGAAGTATG--TGGTG----TGTCACTCATAACAAGTTGGTGATGTTAGATTATAATCAGATGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2064737 87 -   2193130 CCAATATAACTCACAGCA-GGGAGG---AAGGAAGAAATATG--TGGTG----TGTCACTCATAACAAGTTGGTGATGTTAGATTATAATCAGATGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30132260 87 -  77216781 CCACTGTAACTCACAGCA-GGGGGG---AAGGAAGAAGTATG--TGGTG----TGTCACTCATAACAAGTTGGTGATGTTAGATTATAACCAGATGA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28045093 87 -  80997621 CCACTGTAACTCACAGCA-GGGGGG---AAGGAAGAAGTATG--TGGTG----TGTCACTCATAACAAGTTGGTGATGTTAGATTATAACCAGATGA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2101715 87 +  10377808 CCACTGTAACTCACAGCA-GGGGGG---AAGGAAGAAGTATG--TGGTG----TGTCACTCATAACAAGTTGGTGATGTTAGATTATAAGCAGATGA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1987027 87 -   8458610 CCACTGTAACTCACAGCA-GGGGGG---AAGGAAGAAGTATG--TGGTG----TGTCACTCATAACAAGTTGGTGATGTTAGATTATAACCAGATGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64931637 87 +  75148670 CCACTGTAACTCACAGCA-GGGGGG---AAGGAAGAAGTATG--TGGTG----TGTCACTCATAACAAGTTGGTGATGTTAGATTATAACCAGATGG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2171352 87 +   4244037 CCACTATAACTCACAGCA-GGGGGG---AAGGAAGAAGTATG--TGGTG----TGTCACTCATAACAAGTTGGTGATGTTAGATTATAACCAGATGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2194371 88 +   4569836 CCACTATAACTCACAGCAGGGGGGG---AAGGAAGAAGTGTG--TGGTG----TGTCACTCATAACAAGCTGGTGATGTTAGATTATAACCAGATGG
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22848813 73 +  28711273 CTAGTATAATTTACAGCA-GGAGAG---GCCTAA--------------------GCCACTTATATCAAGTTGGCGATGTTAGATTATAACTTGTTAA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22115035 85 - 122082543 CCAATAT-----GCTATA-GTGAAG---ATGGAA-AGTTATA--TGATGTGCATGTGAGTTATAAGAAGTTAGTGATACTAGATTATCATCTAATGG
i mm10.chr11                C 0 I 334
s canFam3.chr9              21462756 85 +  61074082 CTAGTGCAACTCATG----GGAGGG---AAGGAAGGACTATGATGGGTG----TGTTATTGATAACAAGCTGCTGATGTTAGATTATAACT-GGTGA
i canFam3.chr9              I 107 C 0
s dasNov3.JH570468            344954 76 +    852752 TCAGCAC-ATTCATTGAA-GGGAAGCTTGGGGAACATGTGCT--TAATG----GATCACACATGACAAACTGACGATACCAGAT-------------
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I

a score=382526.000000
s hg38.chr17_JH159148v1_alt    21786 56 +     88070 ACAAAGACACACACAAAATCATAAGAGTCAACCCAACACTCTGATGATAATTCTAC
s panTro5.chr17             16332888 56 +  83181570 ACAAAGACACACACAAAATCATAAGCGTCAACCCAACACTCTGATGATAATTCTAC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16237767 56 +  83442489 ACAAAGACACACACAAAATCATAAGCGTCAACCCAACACTCTGATGATAATTCTAC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4084447 56 +   4267968 GCAAAGACACACACAAAATCATAAGAGTCAACCCAACACTCTGATGATAATTCTAC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2064824 56 -   2193130 ACAAAGACACACACAAAATCATAAGAGTCAACCCAACACTCTGATGACAATTCTAC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30132347 56 -  77216781 ACAAAGACACACGCAAAATCATTAGAGTCAACCCAACACTCTGGCGATAATTCTAC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28045180 56 -  80997621 ACAAAGACACACGCAAAATCATTAGAGTCAACCCAACACTCTGGCGATAATTCTAC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2101802 56 +  10377808 ACAAAGACACACGCAAAATCATTAGAGTCAACCCAACACTCTGGCGATAATTCTAC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1987114 56 -   8458610 ACAAAGACACACGCAAAATCATTAGAGTCAACCCAACACTCTGGCGATAATTCTAC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64931724 56 +  75148670 ACAAAGACACACGCAAAATCATTAGAGTCAACCCAACACTCTGGCGATAATTCTAC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2171439 56 +   4244037 ACGAAGACACACACAAAATCATTAGAGTCAACCCAACACTCTGGCGATAATTCTAC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2194459 56 +   4569836 ACAAAAACATACACAAAATCATAAGAGTCAACCCGACACTCTGGCAACAATTCTAC
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22848886 51 +  28711273 AGAAAGATA-----GAAAAAATAAAATCTGACGCAACATTCTGATGATAATTCCAT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22115454 48 - 122082543 acacacacacacacacacacacaGGG--------AACATTCTGATGACAATTTCAC
i mm10.chr11                I 334 C 0
s canFam3.chr9              21462841 45 +  61074082 ACAAAGACACAAAAAGA-----TAGGGTCAATGCAACATTTTGATGATAA------
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            345030 53 +    852752 ACATAAACACAT---AAAGCTTGAGGGCCAAGGCAACTTCCTCAAGACAGAACTAC
i dasNov3.JH570468          C 0 n 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I

a score=2400530.000000
s hg38.chr17_JH159148v1_alt    21842 379 +     88070 ----------------------------ATTATCAC--------------TATGATGACAACTCTGT--------ATCACACAGTAATC--TT---TTTTTAAAGACTTAGTGAGATA----AGAAAGATAAA----CAAAGCC---------CAAGTTATC--CTGACATGCAA-TAGAAATA---TTACAAATA--GTCAACAGATATGATGGTAGACATGAACTAAACCAAATATAAATTTCATCATGGAT-G--CTCACCA--------TGCAATGGTGTGAATGAGAATGCATT-----------GGTA--------------CAGTCAG------------ATATCAT----CCAAGACTTGGAACCT--ATGTTCAAAACgatcaaaa------ccaaattatgtagcgtcacctta-aaa-agatgtatgcattcaaagtctgaggaattgattcaagtctaattgaaga---tgtaa-aaatgtgaaagttaaattagagtattgttgaaccatgg
s panTro5.chr17             16332944 379 +  83181570 ----------------------------ATTATCAT--------------TATGATGACAACTCTGT--------ATCACACAGTAATC--TT---TTTTTAAAGACTTTGTGAGATA----AGAAAGATAAA----CAAAGCC---------CAAGTTATC--CTGACATGCAA-TAGAAATA---TTACAAATA--GTCAGCAGATATGATGGTAGACATGAACTAAACCAAATATAAATTTCATCATGGAT-G--CTCACCA--------TGCAATGGTGTGAATGAGAATGCATT-----------GGTA--------------CAGTCAG------------ATATCAT----CCAAGACTTGGAACCT--ATGTTCAAAACgatcaaaa------ccaaattatgtagcgtcacctta-aaa-agatgtatgcattcaaagtctgaggaattgattcaagtctaattgaaga---tgtaa-aaatgtgaaagttaaattagagtattgttgaaccatgg
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16237823 379 +  83442489 ----------------------------ATTATCAT--------------TATGATGACAACTCTGT--------ATCACACAGTAATC--TT---TTTTTAAAGACTTTGTGAGATA----AGAAAGATAAA----CAAAGCC---------CAAGTTATC--CTGACATGCAA-TAGAAATA---TTACAAATA--GTCAGCAGATATGATGGTAGACATGAACTAAACCAAATATAAATTTCATCATGGAT-G--CTCACCA--------TGCAATGGTGTGAATGAGAATGCATT-----------GGTA--------------CAGTCAG------------ATATCAT----CCAAGACTTGGAACCT--ATGTTCAAAACgatcaaaa------ccaaattatgtagcgtcacctta-aaa-agatgtatgcattcaaagtctgaggaattgattcaagtctaattgaaga---tgtaa-aaatgtgaaagttaaattagagtattgttgaaccatgg
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4084503 382 +   4267968 ----------------------------ATTATCAT--------------TATGATGACAACTCTGT--------ATCACACAATAA-C--CT---TTTTTAAAGACTTTGTGAGATAAGAGAGAAAGATAAA----CAAAGCG---------CAAGTTATC--CTGACATGCAA-TAGAAATA---TTACAAATA--GTCAATAGAAACGATGGTAGACATGAACTAAACCAAATATAAATTTCATCATGGAT-G--CTCACCA--------TGCAATGGTGTGAATGAGAATGCATT-----------GGTA--------------CAGTCAG------------ATATCAT----CCATGACTTGGAACCT--ATGTTCAAAATgatcaaaa------ccaaattatgtagcgtcacctta-aaa-agatgtatgcattcaaagtctgaggaattgattcaagtctaattgaaga---tgtaa-aaatgtgaaagttaaattacagtattgttgaaccatgg
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2064880 378 -   2193130 ----------------------------CTTATCAT--------------TATGATGACAACTCTGT--------ATCACACAGTAATC--TT---TTTTTAAAGACTTTGTGAGATAAGAGAGAAAGATAAA----CAAAGCC---------CAAGTTATC--CTGACATGCAA-TAGAAATA---TTACAAATA--GTCAACAGATATGATGGTAGACATGAACTAAACCAAACATAAATTTCATCACGGAT-G--CTCACCA--------TGTAATGGTGTGAATGAGAATGCATT-----------GATA--------------CAGTCAG------------ATATCAT----CCAAGACTTGGAACAT--ACGTTCAAAATgatcaaaa------ccaaattatgtagcgtcacctta-aaa-agatgtatgtattcaaagtctgaggaattgattcaagtctaattgaaga---tgtaa-aaatgtga-----gacttagagtattgttgaaccatgg
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30132403 380 -  77216781 ----------------------------GTTATCAT--------------TATGATGACAATTCTGT--------ATCACAGAGTAATC--TT---TTTTTAAAGACTTTGTGAGATA----AGAAAGATAAA----CAAAGCC---------CAA---------------GCAA-TAGAAATA---TTACAAATA--GTCAACAGATATGATGGTAAACATGAACTAAACCAAATATGAATTTCATCATGGGT-G--CTCACCA--------TGCAATGGTGTGAATGAGAATGCATT-----------GGTATCAGTGCATGATATCAGTCAG------------ATATCAT----CTAAGACTTGGAATCT--ATGTTCAAAATGATCAAAA------CTAAATTATGTAGCGCCACGTTA-AAA-AGATGGATATATTCAAAGTCTGAGGAATTGATTCAAGTCTAATTGAAGA---TGTAA-AAATGTGAAACTTAAATTAGGGTATTGTTGAACCACAG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28045236 380 -  80997621 ----------------------------GTTATCAT--------------TATGATGACAATTCTGT--------ATCACAGAGTAATC--TT---TTTTAAAAGACTTTGTGAGATA----AGAAAGATAAA----CAAAGCC---------CAA---------------GCAA-TAGAAATA---TTACAAATA--GTCAACAGATATGATGGTAGACATGAACTAAACCAAATATGAATTTCATCATGGGT-G--CTCACCA--------TGCAATGGTGTGAATGAGAATGCATT-----------GGTATCAGTGCATGATATCAGTCAG------------ATATCAT----CTAAGACTTGGAATCT--ATGTTCAAAATGATCAAAA------CTAAATTATGTAGCGCCACGTTA-AAA-AGATGGATATATTCAAAGTCTGAGGAATTGATTCAAGTCTAATTGAAGA---TGTAA-AAATGTGAAACTTAAATTAGGGTATTGTTGAACCACAG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2101858 380 +  10377808 ----------------------------GTTATCAT--------------TATGATGACAATTCTGT--------ATCACAGAGTAATC--TT---TTTTTAAAGACTTTGTGAGATA----AGAAAGATAAA----CAAAGCC---------CAA---------------GCAA-TAGAAATA---TTACAAATA--GTCAACAGATATGATGGTAGACATGAACTAAACCAAATATGAATTTCATCATGGGT-G--CTCACCA--------TGCAATGGTGTGAATGAGAATGCATT-----------GGTATCAGTGCATGATATCAGTCAG------------ATATCAT----CTAAGACTTGGAATCT--ATGTTCAAAATGATCAAAA------CTAAATTATGTAGCGCCACGTTA-AAA-AGATGGATATATTCAAAGTCTGAGGAATTGATTCAAGTCTAATTGAAGA---TGTAA-AAATGTGAAACTTAAATTAGGGTATTGTTGAACCACAG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1987170 380 -   8458610 ----------------------------GTTATCAT--------------TATGATGACAATTCTGT--------ATCACAGAGTAATC--TT---TTTTTAAAGACTTTGTGAGATA----AGAAAGATAAA----CAAAGCC---------CAA---------------GCAA-TAGAAATA---TTACAAATA--GTCAACAGATATGATGGTAGACATGAACTAAACCAAACATGAATTTCATCATGGGT-G--CTCACCA--------TGCAATGGTGTGAATGAGAATGCATT-----------GGTATCAGTGCATGATATCAGTCAG------------ATATCAT----CTAAGACTTGGAATCT--ATGTTCAAAATGATCAAAA------CCAAATTATGTAGCGCCACGTTA-AAA-AGATGGATATATTCAAAGTCTGAGGAATTGATTCAAGTCTAATTGAAGA---TGTAA-AAATGTGAAACTTAAATTAGGGTATTGTTGAACCACAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64931780 380 +  75148670 ----------------------------GTTATCAT--------------TATGATGACAATTCTGT--------ATCACAGAGTAATC--TT---TTTTTAAAGACTTTGTGAGATA----AGAAAGATAAA----CAAAGCC---------CAA---------------GCAA-TAGAAATA---TTACAAATA--GTCAACAGATATGATGGTAGACATGAACTAAACCAAACATGAATTTCATCATGGGT-G--CTCACCA--------TGCAATGGTGTGAATGAGAATGCATT-----------GGTATAAGTGCATGATATCAGTCAG------------ATGTCAT----CTAAGACTTGGAATCT--ATGTTCAAAATGATCAAAA------CCAAATTATGTAGCGCCACGTTA-AAA-AGATGGATATATTCAAAGTCTGGGGAATTGATTCAAGTCTAATTGAAGA---TGTAA-AAATGTGAAACTTAAATTAGGGTATTGTTGAACCACAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2171495 380 +   4244037 ----------------------------GTTATCAT--------------TATGATGACAATTCTGT--------ATCACAGAGTAATC--TT---TTTTTAAAGACTTTGTGAGATA----AGAAAGATAAA----CAAAGCC---------CAA---------------GCAA-TAGAAATA---TTACAAATA--GTCAACAGATATGATGGTAGACATGAACTAAACCAAACATGAATTTCATCATGGGT-G--CTCACCA--------TGCAATGGTGTGAATGAGAATGCATT-----------GGTATCAGTGCATGATATCAGTCAG------------ATATCAT----CTAAGACTTGGAATCC--ATGTTCAAAATGATCAAAA------CCAAATTATGTAGCGCCACGTTA-AAA-AGATGGATATATTCAAAGTCTGAGGAATTGATTCAAGTCTAATTGAAGA---TGTAA-AAATGTGAAACTTAAATTAGGGTATTGTTGAACCACAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2194515 395 +   4569836 ----------------------------GTTATCAT--------------TATGATGACAATTCTGT--------ATCACAGAGTAATC--TT---TTTTTAAAGACTTTGCGAGATA----AGAAAGAGAAA----CAAAGCC---------CAAGCTATC--CTGACATGCAA-TAGAAATA---TTACAAATA--GTCAACAGATATGATGGTAGACATGAACTAAACCAAACATGAATTTCATCATGGGT-GCTCTCACCA--------TGCAATGGTGTGAATGAGAATGCATT-----------GGTATCAGTGCATAATATCAGTCAG------------ATATCAT----CTAAGATTTGGAATCT--ATGTTCAAAATgatcaaaa------ctaaattatgtagcaccacctta-aaa-agatggatatattcaaagtctgaggaattgattcaagtctaattgaaga---tgtaa-aaatgtgaaacttaaattagggtattgttgaaccacgg
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22848937 383 +  28711273 ----------------------------ATTATC-----------------ATGATGATAATTCTAT--------AGCACTGAGTATTCTTTT---TTTTTAAAGTCATTGAGAGAT-----AGACAGCTATA----TAACACTTCACCCAAACAAGTTGTC--CTGAAATACAATTATAAATA---TCATAAATG--ACTAACAGATATTACAGTGGAAATGAACTAAAC----TGTCAACTTCATTGTGGAA-A--CTTACAA--------TGTGATGGCATGA---AGGATGCATG-----------ACTA----------------GTTGG------------GTACTATAGACCCAAGACTTGGAATTc--acattaaaaaggatcagaa------taaaattaggtaacgtcagctta-aaagagaaggatatcttcgaagtcggaggaattaattcagatctgattgacaa---tacac-aaacatgaaacttacagaaaggtgccattgtaccatag
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22115502 361 - 122082543 ----------------------------ATTATCAT--------------TGTAATAATAGTTCTAC--------CTCACTGAG--ATT--TTTCATTTCTGATTACCTTAGAAGATAAG--AGAAAGAGTAA----TAAACCC---------C-----------------ACAT-TTGAAATACACTTAAAAATACTGTGAAGAGATA---------GTATGAGCAATACCAAA-ATAAATTCCACCATGGGT-A--TTCGTGG--------CACAGTGGTGCTAATGAAATGTCACTTCAAGTTGGGAGCTA--------------CAGTTAG------------ATGCTAT----TTCTGACTTGGAATTT--CCCTTATAAAAGACCAAAA------CCAAACTATGTAAAGTCCATTTA-AGA-AAA--GACAGCTTGAAAATCTGAAGAATTGACAGAGACTTGACTAAGAA---TATAA-AAATGTGAAACT----------TATTGACGAAGCATGG
i mm10.chr11                C 0 C 0
s canFam3.chr9              21462886 364 +  61074082 ---------------------------------------------------------------CTAC--------GTCACTGAAGATTC--TT---TTTTTTTTTATTGGTAGAGAAA----ATAAAAGTAAA----TAAATTC---------AAAGTCATT--CTGAAATACAATTAGAAATG---TCATAAGTA--G-CAACAGATATTATGGTAGAAGTGAATGAAA----ACATAAATGTCATCATGAAT-G--TTCATAG--------TGCAGTGGTGTGAACAAAGATTCAT------------GACA---------------AGTTAGGACTACAGAGCCATACTG-----CTGAGCCTCAGAATCT--ACATTAAGAAGGACCCAAA------CTAAATGatgtgaagtcacctta-aaa-agaaggatatcttcaaagtctgagcaattgattcagatctgattgaata---tgtaagaaatatgtagcttaactgagagtattggtgaatcaagg
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            496378 418 -    852752 ATTTAGAACATGAAAGTAAGAGTTGGGAAATATTGTGAGTTACCTGAATATATAATTAAACATGTGTGATGTATGATATCCCAGTTGGC--TC---TTTTTAAAAaattaattaatta----attaattTAAATGACTAGATCA---------CAAGGAATCAGTTGGCTCTTAA-ATGACATG---GCATAAAAA-----AACCCA-------------GTGAACTCTTCC-------ACTAACATCTTGGATAG--GTCACAGTATGGCACTATAAAGGTGCTAATAAAACCACaaa-----------ggag--------------agaaaaa------------agattgc----c-----ctttgaatgtgaatcttaaaaatgttataaaagagagtcaatttatatagcgtcaccttataga-aaaacaaggccttcaagattagcagagtttacattagcctggttgaagattttgtaa-aaa-atgaatgt---------gtatttcttaactaggg
i dasNov3.JH570468          I 28207 T 26659
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I

a score=5263155.000000
s hg38.chr17_JH159148v1_alt    22221 749 +     88070 aaaatcagg-gttaagacaagtgctggggtgaatgttggcagtgtgcctccaggcaactgcccacag-------gagag---------------------gg---------------aCTATGAATTTTC----------------------------------AATTTCCATTGGTGAGAACTATTGTGAA------ACGAACATGTCAAATG---CCATTCAACATTTAGTTTATATAACTTCCTGT------------------------CTGATTCCTTACTCATGTGGTGTTTTAGAAGTTCCTGTTAC--TTAATTCTCCtg--------taatttaataaataggcatccttgctttttgggcttggctaacaggtgtctgctctaagacgtggcttaacc-cttagaatgtaagcaaaatcaggtctctgagtctgcaaggctaaaggccagaaccaggtacatttatcaagggttgtgaattctaccttgcatgcc-attggggagatagtcCtta--------------ttttttttttttttttA---TCTCCAAGGGAATGCCAATTATCATGACAGTGTGTATGCTTTCTTTAAAGCATTATGTATGTGAATGCTTACGGAGTTCAGAGA---ATAACAACCTGTT-AGCAATTAATTAATCAAATAATGATGGGGCAAGACA--GAGTGTTTAAGGATCTCAAAGAATCTC-AGGCATGGAaggaatcctaataaa-cttcctgccatgt-gttgccagatccaatgcttaagtgtctagtaaat-ggaaa---------ttcatacacccggg----gtggtct----gttccattcctaggaagatcttttaaagagcttttAGAGAATT---TCTGTACTCACTCTAGACCCCCTGAACttt
s panTro5.chr17             16333323 746 +  83181570 aaaatcagg-gttaagacaagtgctggggtgaatgttggcagtgtgcctccaggcaactgcccacag-------gagag---------------------gg---------------actatgaattttc----------------------------------aatttccattggtgagaactattgtgaa------atgaacatgtcaaatg---ccattcaacatttagtttatataacttcctgt------------------------ctgattccttactcaTGTGGTGGTTTAGAAGTTCCTGTTAC--TTAATTCTCCtg--------taatttaataaataggcatccttgctttttgggcttggctaacaggagtctgctctaagacgtggcttaacc-cttagaatgtaagtaaaatcaggtctctgagtctgcaaggctaaaggccagacccaggtacatttatcaagggttgtgaattctaccttgcatgcc-tttggggagatagtcCTTA-----------------TTTTTTTTTTTTTA---TCTCCAAGGGAAAGCCAATTATCATGACAGTGTGTATGCTTTCTTTAAAGCATTATGTATGTGAATGCTTATGGAGTTCAGAGA---ATAACAACCTGTT-AGCAATTAATTAATCAAATAATGATGGGGCAAGACA--GAGTGTTTAAGGATCTCAAAGAATCTC-AGGCATGGAaggaatcctaataaa-cttcctgccatgt-gttgccagatccaatgcttaagtgtctagtaaat-ggaaa---------ttcatacacccggg----gtggtct----gttccattcctaggaagatcttttaaagagcttttAGAGAATT---TCTGTACTCACTCTAGACCCCCTGAACttt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16238202 745 +  83442489 aaaatcagg-gttaagacaagtgctggggtgaatgttggcagtgtgcctccaggcaactgcccacag-------gagag---------------------gg---------------aCTATGAATTTTC----------------------------------AATTTCCATTGGTGAGAACTATTGTGAA------ATGAACATGTCAAATG---CCATTCAACATTTAGTTTATATAACTTCCTGT------------------------CTGATTCCTTACTCATGTGGTGGTTTAGAAGTTCCTGTTAC--TTAATTCTCCtg--------taatttaataaataggcatccttgctttttgggcttggctaacaggagtctgctctaagacgtggcttaacc-cttagaatgtaagtaaaatcaggtctctgagtctgcaaggctaaaggccagacccaggtacatttatcaagggttgtgaattctaccttgcatgcc-tttggggagatagtcCTTA------------------TTTTTTTTTTTTA---TCTCCAAGGGAAAGCCAATTATCATGACAGTGTGTATGCTTTCTTTAAAGCATTATGTATGTGAATGCTTATGGAGTTCAGAGA---ATAACAACCTGTT-AGCAATTAATTAATCAAATAATGATGGGGCAAGACA--GAGTGTTTAAGGATCTCAAAGAATCTC-AGGCATGGAaggaatcctaataaa-cttcctgccatgt-gttgccagatccaatgcttaagtgtctagtaaat-ggaaa---------ttcatacacccggg----gtggtct----gttccattcctaggaagatcttttaaagagcttttAGAGAATT---TCTGTACTCACTCTAGACCCCCTGAACttt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4084885 750 +   4267968 aaaatcagg-gttaagacaagtgctggggcgaatgttggcagtgtcccgccaggcaactgcccacag-------gagag---------------------gg---------------actatgaattttc----------------------------------aatttccattggtgagaactattgtgaa------atgaacatgtcaaatg---ccattcaacatttagtttatataacttcctgt------------------------ctgattccttactcaTGTGGTGGTTTGGAAGTTCCTGTTAC--TTAATTCTCCtg--------taatttaataaataggcatccttgctttttgggcctggctaacaggagtctgctctaagatgtggcttaacc-cttagaatgtaagtaaaatcaggtctctgagtctgcaaggctaaaggtcagactcaggtacatttatcaagggttgtgaattctaccttgcatgcc-tttagggagatagtcCTTA--------------TTATTATTATTTTTTTA---TCTCCAAGGGAATGCCAATTATCATGACAGTGTGTATGCTTTCTTTAAAGCATTATGTATGTGAATGCTTACGGAGTTCAGAGA---ATAACAACCTGTT-AGCAATTAATTAATCAAATAATGATGGGGCAAGACA--GAGTGTTTAAGGATCTCAAAGAATCTCAAGGCATGGAAGGAATCCTAATAAA-CTTCCTGCCATGT-GTTGCCAGATCCAATGCTTAAGCGTCTAGTAAAT-GGAAA---------TTCATACACCCGGG----GTGGTCT----GTTCCATTCCTAGGAAGATCTTTTAAAGAGCTTTTAGAGAATT---CCTGTACTCACTCTAGACCCCCTGAACttt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2065258 739 -   2193130 aaaattagg-gttaagccaagtgctggggcgaatgttggcagtgccccaccaggcaactgcccacag-------gagag---------------------gg---------------aCTATGGATTTTC----------------------------------AATTTCCACTGGTGAGAACTATTGTGAA------ATGAACATGTCAAATG---CCATTCAACATTTAGTTTATATAACTTCCTGT------------------------CTGATTCCTTACTCATGTGGTGGTTCAGAAGTTCCTTTTAC--TTAATTCTTCtg--------taatttaataaataggggtccttgctttttgggcttggctaacaggagtctgctctaagatgtggcttagcc-cttagaatgtaagtaaaatcagttctctgagtctgcaaggtt-aaggccagacccagatacatttatcaa-ggttgtgaattctaccttgcatgcc-tttggggagacagtcCTTA----------------------TTTTTTTTA---TCTCCAAGGGAATGCCAATTATCATGACAGTGTGTGTGCTTTCTTTAAAGCATTATGTATGTGAATGCTTATGGAGTTCAGAGA---ATAACAACCTGTT-AGCAATTAATTAATCAAATAATGATGGGGCAAGACA--GAGTGTTTAAGGACCTCAAAGAATCTC-AGGCATGGAAGGAATCCTAATAAA-CTTCCTGGCATGT-GTTGCCAGATCCAATGCTTAAGTGCCTAGTAAAT-GGAAA---------TTCATACACCCGGG----GTGGTCT----GTTCCATTCCTAGGAAGATCTTTTAAAGAGATTTTAGAGAGTT---TCTGTACTCACTCTAGACCCCCTGAACttt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30132783 752 -  77216781 AAAATCAGG-GTTAAGACAAGTGCTggggtgaatgttggcagtgccccaccaagcaactgcccatag-------gagag---------------------gg---------------aCTATGAATTTTC----------------------------------ACATTCCATTGGTGAGAACTGTTGTGAA------ATGAACATGTCAAGTG---TCATTCAACATTTACTTTATATAACTTCCTGT------------------------CTGATTCCTTACTCATGTGGTGGTTTAGAAGTTCCTGTTAC--TTAATTCTCCtg--------taatttaataaatagacatccttgctttatgggcttggctaacaggagtctgctctaagaggtggcttaacc-cttagaatgtaaataaaatcaggtctctgagtctgcaaggctaaaggccagacccagatacatttatcaa-ggttgtgaattctaccttgcatgcc-tttggggagacagtcCTTA----------TATTTTTTTAATTTATTTTTA---TCTCCAAGGGAATGCCAATTATCATGACAGTGTGTATGCTTTCTTTAAAGCATTATGTATGTGAATGCTTATGAAGTTTAGAGA---ATAACAACCTGTT-AGCAATTAGCTAATCAAATAATGATGGGGCAAGACA--GAGTGTTTAAGGATCTCAAAGAATCTC-AGGCATCGAAGGAATCCTGATAAA-CTTCCTGCCATGT-GTTGCCAGATCCAATGCTTAAGTGTGTAGTAAAT-GGAAA---------TTCATACACCTGGG----GTGGTCT----GTTCCATTTCTAGGAAAATCTTTTTAAGGGCTTTTGGAGAGTT---TCTGTACTCACCCTAGACCCCCTGAACttt
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28045616 754 -  80997621 AAAATCAGG-GTTAAGACAAGTGCTggggcgaatgttggcagtgccccaccaagcaactgcccatag-------gagag---------------------gg---------------actatgaattttc----------------------------------acattccattggtgagaactgttgtgaa------atgaacatgtcaagtg---tcattcaacatttactttatataacttcctgt------------------------ctgattccttactcaTGTGGTGGTTTAGAAGTTTCTgttac--ttaattctcctg--------taatttaataaatagacatccttgctttatgggcttggctaacaggagtctgctctaagaggtggcttaacc-cttagaatgtaaataaaatcaggtctctgagtctgcaaggctaaaggccagacccagatacatttatcaa-ggttgtgaattctaccttgcatgcc-tttggggagacagtcCTTATT--------TTTTTTTTTAATTTATTTTTA---TCTCCAAGGGAATGCCAATTATCATGACAGTGTGTATGCTTTCTTTAAAGCATTATGTATGTGAATGCTTATGAAGTTTAGAGA---ATAACAACCTGTT-AGCAATTAGCTAATCAAATAATGATGGGGCAAGACA--GCGTGTTTAAGGATCTCAAAGAATCTC-AGGCATCGAAGGAATCCTGATAAA-CTTCCTGCCATGT-GTTGCCAGATCCAATGCTTAAGTGTGTAGTAAAT-GGAAA---------TTCATACACCTGGG----GTGGTCT----GTTCCATTTCTAGgaaaatctttttaagggcttttggagagtt---tctgtactcaccctagaccccctgaacttt
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2102238 752 +  10377808 AAAATCAGG-GTTAAGACAAGTGCTggggcgaatgttggcagtgccccaccaagcaactgcccatag-------gagag---------------------gg---------------aCTATGAATTTTC----------------------------------ACATTCCATTGGTGAGAACTGTTGTGAA------ATGAACATGTCAAGTG---TCATTCAACATTTACTTTATATAACTTCCTGT------------------------CTGATTCCTTACTCATGTGGTGGTTTAGAAGTTCCTGTTAC--TTAATTCTCCtg--------taatttaataaatagacattcttgctttatgggcttggctaacaggagtctgctctaagaggtggcttaacc-cttagaatgtaaataaaatcaggtctctgagtctgcaaggctaaaggccagacccagatacatttatcaa-ggttgtgaattctaccttgcatgcc-tttggggagacagtcCTTA----------TTTTTTTTTAATTTATTTTTA---TCTCCAAGGGAATGCCAATTATCATGACAGTGTGTATGCTTTCTTTAAAGCATTATGTATGTGAATGCTTATGAAGTTTAGAGA---ATAACAACCTGTT-AGCAATTAGCTAATCAAATAATGATGGGGCAAGACA--GAGTGTTTAAGGATCTCAAAGAATCTC-AGGCATCGAAGGAATCCTGATAAA-CTTCCTGCCATGT-GTTGCCAGATCCAATGCTTAAGTGTGTAGTAAAT-GGAAA---------TTCATACACCTGGG----GTGGTCT----GTTCCATTTCTAGGAAAATCTTTTTAAGGGCTTTTGGAGAGTT---TCTGTACTCACCGTAGACCCCCTGAACttt
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1987550 745 -   8458610 AAAATCAGG-GTTAAGACAAGTGCTggggcgaatgttggcagtgccccaccaagcaactgcccacag-------gagag---------------------gg---------------actatgaattttc----------------------------------aagttccattggtgagAACTGTTGTGAA------ATGAACATATCAAGTG---TCATTCAACATTTACTTTATATAACTTCCTGT------------------------CTGATTCCTTACTCATGTGGTGGTTTAGAAGTTCCTGTTAC--TTAATTCTCCtg--------taatttaataaatagacatccttgctttatgggcttggctaacaggagtctgctctaagaggtggcttaacc-cttagaatgtaaataaaatcaggtctctgagtctacaaggctaaaggccagacccagatacatttatcaa-ggttgtgaattctaccttgcatgccttttggggagacagtcCtta----------ttatttatttatttatttTTA---TCTCCAAGGGAATGCCAATTATCATGACAGTGTGTATGCTTTCTTTAAAGCATTATGTATGTGAATGCTTATGAAGTTTAGAGA---ATAAC---------AGCAATTAGCTAATCAAATAATGATGGGGCAAGACA--GAGTGTTTAAGGATCTCAAAGAATCTC-AGGCATGGAAGGAATCCTGATAAA-CTTCCTGCCATAT-GTTGCCAGATCCAATGCTTAAGTGTGTAGTAAAT-GGAAA---------TTCATACACCTGGG----GTGGTCT----GTTCCATTTCTAGGAAAATCTTTTTAAGGGCTTTTGGAGAGTT---TCTGTACTCACCCTAGACCCCCTGAACttt
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64932160 757 +  75148670 AAAATCAGG-GTTAAGACAAGTGCTggggcgaatgttggcagcgccccaccaagcaactgcccacag-------gagag---------------------gg---------------actatgaattttc----------------------------------acattccattggtgagaactgttgtgaa------atgaacatgtcaagtg---tcattcaacatttactttatataacttcctgt------------------------ctgattccttactcaTGTGGTGGTTTAGAAGTTCCTgttac--ttaattctcctg--------taatttaataaatagacatccttgctttatgggcttggctaacaggagtctgctctaagaggtggcttaacc-cttagaatgtaaataaaatcaggtctctgagtctgcaaggctaaaggccagacccagatacatttatcaa-ggttgtgaattctaccttgcatgccttttggggagacagtcCttatt------atttatttatttatttatttTTA---TCTCCAAGGGAATGCCAATTATCATGACAGTGTGTATACTTTCTTTAAAGCATTATGTATGTGAATGCTTATGAAGTTTAGAGA---ATAACAACCTGTT-AGCAATTAGCTAATCAAATAATGATGGGGCAAGACA--GAGTGTTTAAGGATCTCAAAGAATCTC-AGGCATGGAAGGAATCCTGATAAA-CTTCCTGCCATGT-GTTGCCAGATCCAATGCTTAAGTGTGTAGTAAAT-GGAAA---------TTCATACACCTGGG----GTGGTCT----GTTCCATTTCTAGGAAAATCTTTTTAAGGGCTTTTGGAGAGTT---TCTGTACTCACCCTAGACCCCCTGAACttt
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2171875 752 +   4244037 AAAATCAGG-GTTAAGACAAGTGCTggggcgaatgttggcagtgccccaccaagcaactgcccacag-------gagag---------------------gg---------------actatgaattttc----------------------------------acattccattggtgagaactgttgtgaa------atgaacatgtcaagtg---tcattcaacatttactttatataacttcctgt------------------------ctgattccttactcaTGTGGTGGTTTAGAAGTTCCTGTTAC--TTAATTCTCCtg--------taatttaataaatagacatccttgctttatgggcttggctaacaggagtctgctctaagaggtggtttaacc-cttagaatgtaaataaaatcaggtctctgagtctgcaaggctaaaggccagacccagattcatttatcaa-ggttgtgaattctaccttgcatgcc-tttggggagacagtcCtta----------ttttttatttatttatttTTA---TCTCCAAGGGAATGCCAATTATCATGACAGTGTGTATGCTTTCTTTAAAGTATTATGTATGTGAATGCTTATGAAGTTTAGAGA---ATAACAACCTGTT-AGCAATTAGCTAATCAAATAATGATGGGGCAAGACA--GAGTGTTTAAGGATCTCAAAGAATCTC-AGGCATGGAAGGAATCCTGATAAA-CTTCCTGCCATGT-GTTGCCAGATCCAATGCTTAAGTGTGTAGTAAAT-GGAAA---------TTCATACACCTGGT----GTGGTCT----GTTCCATTTCTAGGAAAATCTTTTTAAGGGCTTTTGGAGAGTT---TCTGTACTCACCCTAGACCCCCTGAACTTT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2194910 759 +   4569836 aaaatcagg-gttaagacaagtgctggggcggatgttggcagtgccccaccaagcaactgcccacag-------gagag---------------------gg---------------aCTATGAATTTTC----------------------------------ACGTTCCATTGGTGAGAACTGTTGTGAA------ATGAACATGTCAAGTG---TCATTCAACATTTACTTTATATAACTTCCTGT------------------------CTGATTCCTTACTCATGTGGTGGTTTAGAAGTTCCTGTTAC--TTAGTTCTCCTGTAATTTAAtaatttaataaataggcatccttgctttatgggcttggctaacagaagtctgctctaagaggtggcttaacc-cttagaatgtaaataaaatcaggtctctgagtctgaaaggctaaaggccagaccctgatacatttatcaa-ggttgtgaattctaccttgcatgcc-tttggggagacaatcCTTA----------TT-TTTATTTATTTATTTTTA---TCTCCAAGGGAATGCCAATTATCATGACAGTGTGTATGCTTTCTTTAAAGCATTATGTATGTGAATGCTTGTGAAGTTTAGATA---ATAAGAACCTGTT-AGCAAGTAGCTAATCAAATAATGATGGGGCAAGACA--GAGTGTTTAAGGATATCAAAGAATCTC-AGGCATGGAAGGAATCCTGATAAA-CTTCCTGCCATGT-GTTGCCAGATCCAATGCTTAAGTGTGTAGTAAAT-GGAAA---------TTCATACACCAGGG----GTGGTCT----GTTCCATTTCTAGGAAAATCTTTTTAAGGGCTTTTGGAGAGTT---TCTATACTCACTCTAGACCCCCTGAACAtt
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22849320 815 +  28711273 aaacccaga-gttaagacaaatgctgaggccaatgttagcagtgcccagacaagaaactgcccacag-------gagag---------------------ggagAGTTATCTGTGGCACTATGAGCtttctttcttcttcttcttcttttttttttttttACATTAATTCCATTGGTGAGACCTGTTGT----------TGAATGTGTCAAACA---CCATCCGACGTTTAGATTCTTTAACTTCCTGT-----------------------ACTGATTCTTTGCTTGTGTGGTGGTGAAGAAGTTCCTGTTAA--TTAATTCTGCtg--------taaattaataaacaggtgctcttgctttatgggcttggttaacgtgtatctgctcccagaggtggcatcacc-tgtggaatgtaaacaatattaaatttctgagtctgcaaagctgaaggctggaccctaataagttaatcaa-gggtgtgaattctaccctgaatact-ttttggaagacagcctttcctctttttcttcttatttttttttttttttAATTTCTCCAAGTGAATGCCCATTGTTATGACAGTGTGTATGTTTTCTTTAAGGCATTATGTATTTGAATGC-TATGGATGTTAATGAATGATAAGAACCTGTC-AGCAAACAATCAATCAAATAATGATGGGCCAAGACA----ATGTTTAGGAACCTGGGAGAATGTT-AGGCATGGAAGGAATCCTGATGGA-C-TCTTACCAAGT-GTTGTCAGATCCCATGCTTGAATGCCTAGTAACTAAAAAA---------TTCATGCACCTGGGTGGAGTGGCCT----GTTCCATCCTTGGGAAGCCCTTTTAAAGAGGTTTTAGGGAGTT---TCCATTCTCACCGTAGGCCCTCTGAGCTTT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22115863 733 - 122082543 ACACTCAAGTGTTCAGACAAGT-------------CTGCCAGTGCCCAGCCAATGAATGGCCCACGG-------TGGCGTGCTGATGGGGTTTGGTCTTTGG---------------ACTGTGAATTCCC----------------------------------CTGTTTCCTTGGGGAGA--CATTGTACA------ATGAGCATATCAAATGCCCCCCCTCAACATTTTGTTCTTTTCACTTCCTGT-----------------------GTTGATTCCTTGGTCATGTGGTAGGTGAGAAGTTTCTGTAAG--CTAATGCTACCA--------Caagttaataaacagatgccctgg-tttataggcttcctcagaatgtgtcggctccaagcagtggcttcacc-tttagaatgtaaacagaaatgagtctgtgagtttgcaaggctaaaggccagatcctTCCAAGTTTATCAG-AACCATGAGTTCTGCCCCAAATGTT-CTTTGAAGG--------TA----------------------GCATTTTTA------AAAAGGGATCACTGTAGTTTATAGCCATACATCTGTTCTCCTTAAA-------------GAATGC-TATGGACTTGAGAGG---GCAAT--CTGGTT-GGCAGTGAACCAATCTAGTAATGACAGGCCAGGACA--GAATGCTTAGAGAG-TCAAGGAATTCC-AGGCATGGAAGGAATCTTCATGAATCTTCCTGACAGGTGGGTGCCAGATCCAGTGTTT----GTTAATTGGCT-GAAAACCTACGGTTTTCATGGAAACG------ATGGTCTGGTGGCTGTATCCCTGGGAAGGTCTTTTGCAGAGTTTCTCCACCTTTTAGTTTATTCCCATTCCCAGCCCTCTAAATGT-
i mm10.chr11                C 0 C 0
s canFam3.chr9              21463250 727 +  61074082 aaactcagg-------acaagcactgaagcaaatgttggcagggactagccaagc-accactcaaagagagacagagag-----------tttagtcacaga---------------actatgaattttG-------------------------------------TAAAAATCGTAAAAATT-TTATAAAAATTTGATGTGGGCATCAAATG---CCACCTGACATTTAGTTCCTTTAACTTCTTAAAGGATTTTAACTTAAAATCCTTAACTGATTGCTTGCTCATGGTGTGGTTGAGAAGCTcctgttatagttaattct-ctg--------taagtacatacataggcttccttgttttatgggcttggctaacatgagtctgctccaagaggtggcttcgccacttagtatgtaa-----actaagtctttgagactgcaagccttaatgtga----tagctaactttgtcaa-ggctatgaattctgtcctgaatgcc-tttggaaaa--------ca------------------------------g---ccTCCAAGGAAATGCATATTATCATGATAATGTATGTGTTTTCTTTAAAGCAT----------------TGTGAACTTCAGAAA---ATGGAGACATGTTAAGTGAGCAATCAATCAGATAATGATAGGGTGAGACAGAGAGTGTTTAGGGACCTCAAAGAATCTT-AGGCATGGAAGGAATCCTGATAAA-CTTCTTGCCAAGTGGTTGTCAGTTCTAATGCTGGAATGTCTAGTAAAA-GAACA---------TTTGTGTACCTGGG----GTGGTCC----GGCCCATCTTTAGGATGCTCTTATAAAGAGCGTCTCCACATTT---T--------------GGTTCTCTGAActtt
i canFam3.chr9              C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e dasNov3.JH570468            496796 26659 -    852752 T
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I

a score=328885.000000
s hg38.chr17_JH159148v1_alt    22970 47 +     88070 ttcctcattagaagcatctgtgactaagcaatcagaatggcttttct
s panTro5.chr17             16334069 47 +  83181570 ttcctcattagaagcatctgtgactaagcaatcagaatggcttttct
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16238947 47 +  83442489 ttcctcattagaagcatctgtgactaagcaatcagaatggcttttct
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4085635 47 +   4267968 ttcctcattagaagcatctgtaactatgcaatcagaatggcttttct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2065997 47 -   2193130 ttcctcattagaagcatctgtgactatgcgatcagaatggcttttct
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30133535 47 -  77216781 ttcctcattagaagcatctgtgactatgaaatcagaatggcttttct
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28046370 47 -  80997621 ttcctcattagaagcatctgtgactatgctatcagaatggcttttct
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2102990 47 +  10377808 ttcctcattagaagcatctgtgactatgcaatcagaatggcttttct
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1988295 47 -   8458610 ttcctcattagaagcatctgttactatgcaatcagaatggcttttct
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64932917 47 +  75148670 ttcctcattagaaacatctgtgactatgcaatcagaatggcttttct
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2172627 47 +   4244037 TTCCTCATTAGAAGCATCTGTGACTATGCAATCAGAATGGCTTTTCT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2195669 47 +   4569836 ttcctcattagaagcatctgtgactatgcaatcagaatggcttttct
i colAng1.NW_012122154v1    C 0 C 0
s mm10.chr11                22116596 47 - 122082543 TCCCCCCTGAGTAGCAAACATTACGGGATAATCAGAACAGTACTTCT
i mm10.chr11                C 0 C 0
s canFam3.chr9              21463977 47 +  61074082 tcctccattggaagcatctgtgactgtataatcagaatagcatttct
i canFam3.chr9              C 0 I 188
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e dasNov3.JH570468            496796 26659 -    852752 T
e otoGar3.GL873537          22850135  0 +  28711273 C
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I

a score=737938.000000
s hg38.chr17_JH159148v1_alt    23017 113 +     88070 gagcgcttccctaccct---t---agctccatcctctattccagtgccctttgctggaaaatcacattca-tgttcctgtaaata-gccaattatcttcctgctctgta-------------------gaatgcagttcc
s panTro5.chr17             16334116 114 +  83181570 cagcgcttccctaccct---t---agctccgtcctctattccagtgccctttgctggaaaatcacattca-tgttcctgtaaatatgccaattatcttcctgctctgta-------------------gaatgcagttcc
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16238994 114 +  83442489 gagcgcttccctaccct---t---agctccatcctctattccagtgccctttgctggaaaatcacattca-tgttcctgtaaatatgccaattatcttcctgctctgta-------------------gaatgcagttcc
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4085682 114 +   4267968 gagcacttccctaccct---T---AGCTCCATCCTCTATTCCAGTGCCCTTTGCTGGAAAATCACATTCA-TGTTCCTGTAAACATGACAATTATCTTCCTGCTCTGTA-------------------GAATGCAGTTCC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2066044 114 -   2193130 gagcgcttccctaccct---t---agcttcatcttctattccagtgtcctttgccggaaaatcacattta-tgttcccGTAAACATGACAATTATCTTCCCGCTCTGTA-------------------GAATGCAGTTCC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30133582 114 -  77216781 aagcacttccctactct---T---AGTTCCATCCTCTATTCCAGTGCCCTTTGTTGGAAAATCACATTCA-TGTTCCTGTAAACATGACAATTATCTTCCTGCTCTGCA-------------------GAATGCAGTTCC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28046417 114 -  80997621 aagcacttccctactct---T---AGTTCCATCCTCTATTCCAGTGCCCTTTGCTGGAAAATCACATTCA-TGTTCCTGTAAACATGACAATTATCTTCCTGCTCTGCA-------------------GAATGCAGTTCC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2103037 114 +  10377808 aagcacttccctactct---t---agttccatcctctattccagtgccctttgctggaaaatcacattca-tgttcctgtaaacatgacaattatcttcctgctctgca-------------------gaatgcagttcc
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1988342 114 -   8458610 aagcgcttccctactct---T---GGTTCCATCCTCTATTCCAGTGCCCTTTGCAGGAAAATCACATTCA-CATTCCTGTAAACATGACAATTATCTTCCTGCTCTGCA-------------------GAATGCAGTTCC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64932964 114 +  75148670 aagcgcttccctactct---T---AGTTCCATCATCTATTCCAGTGCCCTTTGCAGGAAAATCACATTCA-TGTTCCTGTAAACATGACAATTATCTTCCTGCTCTGTA-------------------GAATGCAGTTCC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2172674 114 +   4244037 AAGCGCTTCCCTACTCT---T---AGTTCCATCCTCTATTCCAGTGCCCTTTGCTAGAAAATCACATTCA-TGTTCCTGTAAATGTGACAATTATCTTCCTGCTCTGCA-------------------GAATGCAGTTCC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2195716 114 +   4569836 aaacgtttccctactct---T---AGTTCCATCCTCTATTCCAGTGCCCTTTGCTGGAAAATCACATTCA-TGTTCCTGTAAACATGACAATTATCTTCCTGCTCTGTA-------------------GAATGAAGTTCC
i colAng1.NW_012122154v1    C 0 C 0
s mm10.chr11                22116643 117 - 122082543 GAGCATGCCTCTGCCTT---TGCCATCTCTCTTCTCTA-CCTGGGGCACTTTGATAGGAAGTCAGATAGATTTTTTCTCTAAACACAGTGACTATTTTCTTTTGATGTG-------------------GGATACAGTttc
i mm10.chr11                C 0 I 447
s canFam3.chr9              21464212 136 +  61074082 gagcacttccctaccataact---agctctactttctatttcagtgccctgggccaggaaatctcatcct-ttttcttctaaaCATCACGATTATCTTTCTGCTCTGTAGGATCTTTTTGCTCTATTCGAATGCAGTTTC
i canFam3.chr9              I 188 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e dasNov3.JH570468            496796 26659 -    852752 T
e otoGar3.GL873537          22850135   0 +  28711273 C
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I

a score=1453903.000000
s hg38.chr17_JH159148v1_alt    23130 221 +     88070 agccaaacaagcattt-------ccttgccttgctatcacaaatttttacatggtccttttgcagcaagtttatcatcactaacctttgcttaccaagtccttctcattgttaaaatctagatcaaggtggtttacctggttgcctaagaaccttctgctcaattt-tagtgattctgaggtccc-cacaaaatagctagattgttggatgttccttcat-------------------cccttctcct
s panTro5.chr17             16334230 221 +  83181570 agtcaaacaagcattt-------ccttgccttgctatcacaaatttttacatggtccttttgcagcaagtttatcatcaccaacctttgcttaccaagtccttctcattgttaaaatctagatcaaggtggtttacctggatgcctaagaaccttctgctcaattt-tagtgattctgaggtccc-cacaaaatagctagattgttggatgttccttcat-------------------cccttctcct
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16239108 221 +  83442489 agtcaaacaagcattt-------ccttgccttgctatcacaaatttttacatggtccttttgcagcaagtttatcatcaccaacctttgcttaccaagtccttctcattgttaaaatctagatcaaggtggtttacctggatgcctaagaaccttctgctcaattt-tagtgattctgaggtccc-cacaaaatagctagattgttggatgttccttcat-------------------cccttctcct
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4085796 221 +   4267968 AGCCAAGCAAGCATTT-------CCTTGCCTTGCTATCACACATTTTTACATGGTCCTTTTGCAGCAAGTTTATCATCACTAACCTTTGCTTACCAAGTCCTTCTCATTGTTAAAATCTAGATCAAGGTGGTTTACCTGGATGCCTAAGAACCTTCTGCTCAATTT-TAGTGATTCtgaggtccc-cacaaaatagctagattgttggatgttccttcat-------------------cccttctgct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2066158 221 -   2193130 AGCCAAGCAAACATTT-------CCTTGTCTTGCTATCACAAATTTTTAGATGGTCCTTTTGCAGCAAGTTTATCACCACTAACCTTTGCTTACCAAGTCCTTCTCATTGTTAAAATCTAGATCAAGGTGGTTTACCTGGATGCCTAAGAGCCTTCTGCTCAATTT-TAGTGATTCtgaggtccc-cacaaaatagctagattgttggatgttccttcat-------------------cccttctcct
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30133696 221 -  77216781 AGCCAAGCAAGCATTT-------CTTTGCCTTGCTATCACAAATTTTTAGATGATCCTTTTGCAGCAAGCTTATCATCACTAACCTTTGTTTTCCAAGTCCTTCTCATTGTTAAAATCTAGATCAGGGTGATTTACCTGGATGCCTAAGAACCTTCTACTTAATGT-TAATGATTCTGAGGTCTC-CACAAAATATCTAGATTGTTGGATGTTCCTTCAT-------------------CCCTTCTCCT
i rheMac8.chr16             C 0 I 3
s macFas5.chr16             28046531 221 -  80997621 AGCCAAGCAAGCATTT-------CTTTGCCTTGCTATCACAAATTTTTAGATGATCCTTTTGCAGCAAGCTTATCATCACTAACCTTTGTTTTCCAAGTCCTTCTCATTGTTAAAATCTAGATCAGGGTGATTTACCTGGATGCCTAAGAACCTTCTACTTAATGT-TAATGATTCTGAGGTCTC-CACAAAATATCTAGATTGTTGGATGTTCCTTCAT-------------------CCCTTCTCCT
i macFas5.chr16             C 0 I 69628
s macNem1.NW_012014910v1     2103151 221 +  10377808 agccaagcaagcattt-------ctttgccttgctatcacaaatttttagatgatccttttgcagcaagcttatcatcactaacctttgttttccaagtccttctcattgttaaaatctagatcagggtGATTTACCTGGATGCCTAAGAACCTTCTACTTATTGT-TAATGATTCTGAGGTCTC-CACAAAATATCTAGATTGTTGGATGTTCCTTCAT-------------------CCCTTCTCCT
i macNem1.NW_012014910v1    C 0 I 29563
s cerAty1.NW_012006043v1     1988456 221 -   8458610 AGCCAAGCAAGCATTT-------CCTTGCCTTGCTATCACAGATTTTTAGATGATCCTTTTGCAACAAGCTTATCATCACTAACCTTTGCTTTCCAAGTCCTTCTCATTGTTAAAATCTAGATCAGGGTGATTTACCTGGATGCCTAAGAACCTTCTACTCAATGT-TAATGATTCTGAGGTCTC-CACAAAATATCTAGATTGTTGGATGTTCCTTCAT-------------------CCCTTCTCCT
i cerAty1.NW_012006043v1    C 0 I 2805
s chlSab2.chr16             64933078 221 +  75148670 AGCCAAGCAAGCATTT-------CCTTGCCTTGCTATCACAAATTTTTAGATGATCCTTTTGCAGCAAGCTTATCATTACTAACCTTTGCTTTCCAAGTCCTTCTCATTGTTAAAATCTAGATCAGGGTGATTTACCTGGATGCCTAAGAACCTTCTACTCAATGT-TAATGATTCTGAGGTCTC-CACAAAATATCTAGATTGTTGGATATTCCTTCAT-------------------CCCTTCTCCT
i chlSab2.chr16             C 0 I 2808
s manLeu1.NW_012106252v1     2172788 221 +   4244037 AACCAAGCAAGCATTT-------CCTTGCCTTGCCATCACAAATTTTTAGATGATCCTTTTGCAGCAAGCTTATCATCACTAACCTTTGCTTTCCAAGTCCTTCTCATTGTTAAAATCTAGATCAGGGTGATTTACCTGGATGCCTAAGAACCTTCTACTCAATGT-TAATGGTTCTGAGGTCTC-CACAAAATATCTAGATTGTTGGATGTTCCTTCAT-------------------CCCTTCTCCT
i manLeu1.NW_012106252v1    C 0 I 61605
s colAng1.NW_012122154v1     2195830 221 +   4569836 AGCCAAGTAAGCATTT-------CCTTGCCTTGCTATCACAAATTTTTAGATGATCCTTTTGCAGCAAGCTTATCATCACTAACCTTTGCTTACCAAGTCCTTCTCATTGTTAAAATCTAGATCAGGATGATTTACCTGGATACCTAAGAACCTTCTACTCAATGT-TAATGATTCTGAGGTCTC-CACAAAACACCTAGATTGTTGGATGTTCCTTCAT-------------------TCCTTCTCCT
i colAng1.NW_012122154v1    C 0 I 9016
s mm10.chr11                22117207 241 - 122082543 TGTCAAGCAAATACTTAGAAAAGAAAAGCCTTGCTAATGCAAAATTTTAGA-GGTCCTCTGGTGGCAAGTTTGTCATCGCTAA----TATTTAGTGGGACCCTACTACTGTTACAATAAAGTTCAGAGTGGTTTTCCTGGATGCCTAAGAGCTTTGCATTTTAGGTGTACTGGG--TGAGGTCTC-CAGGAAATATTGAGATTATTTTATTATCCATTATTATTCCTCTCCTATTATTATCCCTCTCCT
i mm10.chr11                I 447 I 58
s canFam3.chr9              21464348 221 +  61074082 AATCAAGCATACATTT-------CCCTGATTGGTTTTCACATATTTTAAGATAGTCCTTCTGTAGCAAGTTTACCATCATTAA-CTTTGCTCACCAGATACTCTTCACTGATAAAAACAGGTTCAAAGTGGTTTATCTGGATGCttaagaattttctactctgttt-tagttacactgagatcctgaatgcaacacctagagatttggatgtatcctcat-------------------ccctttcagt
i canFam3.chr9              C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e dasNov3.JH570468            496796 26659 -    852752 T
e otoGar3.GL873537          22850135   0 +  28711273 C
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I

a score=524036.000000
s hg38.chr17_JH159148v1_alt    23351 428 +     88070 cccatgtgtgctg-----------------------------------------------------------------------------------------------------------gttttgtgatctgcctttgcaatgtatcatcaat-----ttcctgtgtttggccaggaagactg-----------cagtatgtccacacaaagagagctcatgggttcatcttcccttctttgttcatgcacaggttttccaCTGTGGAAGAAGGCAGGAAAGTCTGGGCCATGAGGATCGAAATCACATAGATGAGTATTTGCATCATGCCTGTTCTGCTACCTACAAGCTGCAGGCTTTGGGGGAAG-TACTTAATATATTCCAACCATGTTTTA----TTGTTTCTGCATTTACATTTTTGGGGAATTTTTGTACCTGAGT---TCTTTCAGTATCACCCCTGTTGTTCTACTTGGTAAATTGATTCATGGGTTCAAAATGGA--AGTTT---TTTATTTCCTTCCCTCTCTGATT-CGTTGCTAAGATACAATTCTGT-TAG
s panTro5.chr17             16334451 428 +  83181570 cccgtgtgtgctg-----------------------------------------------------------------------------------------------------------gttttgtgatctgcatttgcaatgtatcatcaat-----ttcctgtgtttggccaggaacactg-----------cagtatgtccacacaaagagagctcatgggttcatcttcccttctttgttcatgcacaggttttccaCTGTGGAAGAAGGCAGGAAAGTCTGGGCCATGAGGATCGAAATCACATAGATGAGTATTTGCATCATGCCTGTTCTGCTACCTACAAGCTGCAGGCTTTGGGGGAAG-TACTTAATATATTCCAACCATGTTTTA----TTGTTTCTGCATTTACATTTTTGGGGAATTTTTGTACCTGAAT---TCTTTCAGTATCACCCCTGTTGTTCTACATGGTAAATTGATTCATGGGTTCAAAATGGA--AGTTT---TTTATTTCCTTCCCTCTCTGATT-CATTGCTAAGATACAATTCTGC-TAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16239329 428 +  83442489 cctgtgtgtgctg-----------------------------------------------------------------------------------------------------------gttttgtgatctgcatttgcaatgtatcatcaat-----ttcctgtgtttggccaggaacactg-----------cagtatgtccacacaaagagagctcatgggttcatcttcccttctttgttcatgcacaggttttccaCTGTGGAAGAAGGCAGGAAAGTCTGGGCCATGAGGATCGAAATCACATAGATGAGTATTTGCATCATGCCTGTTCTGCTACCTACAAGCTGCAGGCTTTGGGGGAAG-TACTTAATATATTCCAACCATGTTTTA----TTGTTTCTGCATTTACATTTTTGTGGAATTTTTGTACCTGAAT---TCTTTCAGTATCACCCCTGTTGTTCTACATGGTAAATTGATTCATGGGTTCAAAATGGA--AGTTT---TTTATTTCCTTCCCTCTCTGATT-CGTTGCTAAGATACAATTCTGC-TAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4086017 428 +   4267968 cccatgtgtgctg-----------------------------------------------------------------------------------------------------------gttttgtgatctgcatttgcaatgtatcatcaat-----ttcctgtgtttggccaggaagactg-----------cagtatgtccacacaaggagagctcatgggttcatcttcccttctttgttcatgcacaggttttccaCTGTGGAAGAAGGCAGGAAAGTATGGGCCATGAGGATCGAAATCACATAGATGAGTATTTGCATCATGCCTGTTCTGCTATCTACAAGCTGCAGGCTTTGGGGGAAG-CACTTAATATATTCCAACCATGTTTTA----TTGTTTCTGCATTTACATTTTTGGGGAATTTTTGTACCTGAAT---TCTTTCAGTATCACCCCTGTTGTTCTACATGGTAAATTGATTCATGGGTTCAAAATGGA--AGTTT---TTTATTTCCTTCCCTCTCTGATT-CGTTGCTAAGATACAATTCTGC-TAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2066379 422 -   2193130 cccatgtgtactg-----------------------------------------------------------------------------------------------------------gttttgtgatctgcatttgcaatgtatcatcaat-----ttcctgtgtttggccaggaagactg-----------tagtacgtccacacaaggagagctcatgggttcatctttccttctttgttcatgcacaggttttccaCTGTGGAAGAAGGCAGGAAAGTCTGGGCCATGAGGATCAAAATCACATAGATGAGTATTTGCATCATGCCTGTTCTGCTACCTACTAGCTGCAGGCTTTG-----AG-TACTTAAAATATTCCAATCATGTTTTA----TTGTTTCTGCATTTACATTTTTGGGGAATTTTTGTACCTGAAT---TCTTTCAGTATCACCCCTG-TGTTCTACATGCTAAATTGATTCATGGGTTCAAAATGGA--AGTTT---TTTATTTCTTTCCCTCTCTGATT-TGTTGCTAAGATACAATTCTGC-TAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s mm10.chr11                22117506 527 - 122082543 tccagctgtgctgggaacttgccgtgtagtccaggctggtcttgagtttacagtggacctgccattgcctcccaagtgctgggattacagacatgtgccatcatgcctggctATGCACCAGCTTTGTGATGTACATCTTTAGCACATCCTTAATATTTATTTTTGTCTCTTGCCAGGAAGATTGTATTTATTGTATAATCTGCCCATAGGAAGAGAGCTCATGCATGCATCTTT-CTTCCTAGTTTACCTGCATGTTTCCTACTGTGGAAGGAGGCAGGAATGGCTGGGTCATG--------AACCAGAGACATGGATATTCTCATCATTCCTCTTTTGCT---TA------------TTTG-----AG-AATTTAATTTGTCCCTA-CAGCTTCCA----CTGGTTTTACGTGTTCTTATTTCAGAAGCATTTGTACCCGAACTGGTCTCTCAGTGTC-CCCCTCTTGTCCCACCTA-CAAGCTGATTCGTGTGTTCGATGTAGACCAGTTTTTCTTTCCTTCTTTTCTGCCTTGATT-GGTTGGCAAGACATGATCCAGC-TAG
i mm10.chr11                I 58 I 392
s canFam3.chr9              21464569 429 +  61074082 tgcatatgtgtc------------------------------------------------------------------------------------------------------------gtttagtgagctgcattttcagtgcatcatcaat-----tttctgtgtctggcccagaaggcta-----------taatatgcccacataatgagagcttatccacgcatatctccttctatgttcatctacattttctcAACAGCAGAAGAAGACAGGAGAGGCTAAGCCATGGGGATTGAAATCAGATAGATGAAAATTCACATCATTCATGTTCTGC----TATAGACTACAGGCTTTTGGGGAAGTTATTTAATATATTCCAACCATTCTTCATTTTTTTTTTTTACATATACATTGCTGAGGAGCTTCTGTACCCAAATTCTTCTTTCAACATCACTCCTTTTGTTCTACATTACAAGTTGATTCGTGAGTTCCATATTGA--ACTTT-------TCTCTGTTCCTCCCTGGTTGGGTTGGCCAGTTACAATCCTGCATAG
i canFam3.chr9              C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e dasNov3.JH570468            496796 26659 -    852752 T
e otoGar3.GL873537          22850135   0 +  28711273 C
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28046752 69628 -  80997621 I
e rheMac8.chr16             30133917   3 -  77216781 I

a score=27670.000000
s hg38.chr17_JH159148v1_alt    23779 25 +     88070 ATACAGTCGTCATGAACcacccttc
s panTro5.chr17             16334879 25 +  83181570 ATACAGTCGTCATGAACcacccttc
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16239757 25 +  83442489 ATACAGTCGTCATGAACcacccttc
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4086445 25 +   4267968 ATACAGTCGTCATGAACCACCCTTC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2066801 23 -   2193130 --ACAGTCGTCATGAACCACCCTTC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s canFam3.chr9              21464998 25 +  61074082 ATAGAGACATCTCAACCCACTCTTC
i canFam3.chr9              C 0 C 0
e mm10.chr11                22118033 392 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e dasNov3.JH570468            496796 26659 -    852752 T
e otoGar3.GL873537          22850135  0 +  28711273 C
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28046752 69628 -  80997621 I
e rheMac8.chr16             30133917  3 -  77216781 I

a score=338887.000000
s hg38.chr17_JH159148v1_alt    23804 263 +     88070 ctatatcattaataatataggctcaccttcctc------acttct----------actgtataaattttgtctcttgtttgtattcttcccgaagcacaataaaggtgaggatgttgaatgtctcgttcacttctgtaatcacagcacctggcacagtacttaacacacagtaagtgctcaataaatcttatttaaataaaggaTTGTTTTAATATCCAGATGTAAGTCTTTATTCTTATTCACTCTCCC----GAAGTCCCAACTATTGGTAGAATAAGGAA
s panTro5.chr17             16334904 263 +  83181570 ctatatcattaataatataggctcaccttcctc------acttct----------actgtataaattttgtctcttgtttgtattcttcccgaagcacagtaaaggtgaggatgttgaatgtctcgttcacttctgtaatcacagcacctggcacagtacttaacacacagtaagtgctcaataaatcttatttaaataaaggaTTGTTTTAATATCCAGATGTAAGTCTTTATTCTTATTCACTCTCCC----GAAGTCCCAACTACTGGTAGAATAAGGAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16239782 263 +  83442489 ctatatcattaataatataggctcaccttcctc------acttct----------actgtataaattttgtctcttgtttgtattcttcccgaagcacagtaaaggtgaggatgttgaatgtctcgttcacttctgtaatcacagcacctggcacagtacttaacacacagtaagtgctcaataaatcttatttaaataaaggaTTGTTTTAATATCCAGATGTAAGTCTTTATTCTTATTCACTCTCCC----GAAGTCCCAACTACTGGTAGAATAAGGAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4086470 263 +   4267968 CTATATCATTAATAATATAGGCTGACCTTCCTC------acttct----------actgtataaattttgtctcttgtttgtattcttccagaagcacaataaaggtgaggatgttgaatgtctcgttcacttctctaatcacagcacctggcacagtacttaacacacagtaagtgctcaataaatcttatttaaataaaggaTTGTTTTAATACCCAGACGTAAGTTTTTATTCTTATTCACTCTCCC----GAAGTCCCAACTATTGGTAGAATAAGGAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2066824 268 -   2193130 CTATATCATTAATAATATAGGCTCACCTTCCTCACTTCTacttct----------actgtataaattttgtctcttgtttgtattctt-cagaagcacaataaacgtgaggatgttgaatgtcttgttcacttctataatcacagcacctggcacagtacttaacacacagtaagtgctcaataaatctggtttaaataaaggaTTGTTTTAATATCCAGATGTAAGTCTTTATTCTCATTCGCTCTCCT----GAAGTCCCAACTATTGGTAGAATAAGGAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s mm10.chr11                22118425 248 - 122082543 CTATGTAATT-GTGATGGAAGTTTATGATTCTC------ACTCCT----------GATATACGCATTTCCT-TTTTCTGTCTGTTCTTCAAG----ACAACgacagtggacatcttgatggccttgttcacatctttaatcctggcatctggcacagtacttag---gtagtaagtgccccctaaattctattgaaATAAAGGACCATTTTAACACAGAGACCAAAATCTTTGTTTCCATTCTTCATACC----AAATTCTCAAT------TAGGAAAAAGAG
i mm10.chr11                I 392 C 0
s canFam3.chr9              21465023 277 +  61074082 CTATATCCTTGGTGATAAAGGCTCATCAACCCT------ACTTAGGGCATATAAAGGCATATAAATTTCATCTCCTGTTTATATTCTACCAGAagcacaataagggtagggagctggaatgtctcattcactcctgtagttccaacatctggcacagtacttaacacacagtaagtactcagtaactcttgttgaaATAAAGGACACTTTTAATATCCAGATGTAATTCTCAGTTCTCTCTCCCCTCCCCCATGCAAGCCCCAACTATGGATAGGAAAGGGAT
i canFam3.chr9              C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e dasNov3.JH570468            496796 26659 -    852752 T
e otoGar3.GL873537          22850135   0 +  28711273 C
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28046752 69628 -  80997621 I
e rheMac8.chr16             30133917   3 -  77216781 I

a score=183204.000000
s hg38.chr17_JH159148v1_alt    24067 127 +     88070 ATGAGACTGTGTGAGGGTACCAAGTAATTTGC------TGTCATATTCAA---------GACTCCATAGACCC-GGTTATGTCTCTAGACTGGTAGgggcagggagcatagcacacacagtgagtgtagtgtagacagcttag
s panTro5.chr17             16335167 127 +  83181570 ATGAGACTGTGTGAGGGTACCAAGTAATTTGC------TGTCATATTCGA---------GACTCCATAGACCC-GGTTATGTCTCTAGACTGGTaggggcagggagcatagcacacacagtgagtgtagtgtagacagcttag
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16240045 127 +  83442489 ATGAGACTGTGTGAGGGTACCAAGTAATTTGC------TGTCATATTCGA---------GACTCCATAGACCC-GGTTATGTCTCTAGACTGGTAGgggcagggagcatagcacacacagtgagtgtagtgtagacagcttag
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4086733 127 +   4267968 ATGAGACTGTGTGAGGGTACCAAGTAATTTGC------TGTCATATTCAA---------GACTCCATAGACCC-GGTTATGTCTCTAGACTGGTAGGGGCAGGGAGCATAGCACACACAGTGAGTGTAGTGTagacagcttag
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2067092 127 -   2193130 ATGAGACTGTGTGAGGGTACGAAGTAATTTGC------TGTCATATTCAA---------GGCTCCATAGACCC-GGTTCTGTCTCTAGACTGGTAGGGGCAGGGAGCATAGCACACACAGTGAGTGTAGTGTagacagcttag
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22850135 128 +  28711273 ATGAGATCATGTGGAAGCACCAAGTTATTTGC------TCTCATATTCAG---------GGATTTATAGATCCAAGTTCCTTCTTTAGACTGGTGGGACCAGGGAGTGCAGGGAACACAGCAAGTATGCGGCAAACAGCCTGA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22118673 143 - 122082543 GTCAAACTGAGTGCATGGATCAGGTAATTTGCAACTATTGGTATTTTCACTGTCCATATAGCTTCATCAACCCATGTTCCTTCTCTAGACATGTATGAGCAAGCTGTGTAGGGATCCCAGTGAGTGAAGTGCCAACAGTTTGG
i mm10.chr11                C 0 C 0
s canFam3.chr9              21465300 120 +  61074082 AGGACAATGTGTGAAAGTGT----TAATTTGT------TTTTATGTTCAA---------AGTTTGCTAAGCCA-TGTTCTTTCCCTAGCCTGGTGGTG--AGGGAGTATAA-GTACACAGTGAGTGTGGCAtgttaaccttag
i canFam3.chr9              C 0 I 29909
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e dasNov3.JH570468            496796 26659 -    852752 T
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28046752 69628 -  80997621 I
e rheMac8.chr16             30133917   3 -  77216781 I

a score=429114.000000
s hg38.chr17_JH159148v1_alt    24194 355 +     88070 tgtttgaagccaggtcaact----gttaactgtacaactttgaacaagttccttcatctcccttagcctctgtttcttcatctgtgaaatgaggaaaataaaacATTGGTGGATTATGAATTAGAAAA---------------ACCTAGACTAATACCTGTAGTTACTCAGTAAATGGTAGTGCCTCAGCTCATCCTTGA-------ATGC-------ATCAGGAGAGCAAGCACTTAGCAAGTCAGACAACATGGAAGCCTCTTTGGAAAATCC--CTCCACCTTCTTAGATTT-----CCTAAGACCTAACT-ACTATGTGATAGCTCAGGCCACAGAATATTATTTTTCCCCTGGAGCCAGTATCTGTTCTTTTTTTTCAAGAAATATCTTGG
s panTro5.chr17             16335294 355 +  83181570 tgtttgaagccaggtcaact----gttaactgtacaactttgaacaagttccttcatctcccttagcctctgtttcttcatctgtgaaatgaggaaaataaaacATTGGTGGATTATGAATTAGAAAA---------------ACCTAGACTAATACCTGTAGTTACTCAGTAAATGGTAGTCCCTCAGCTCATCCTTGA-------ATGC-------ATCAGGAGAGCAAGCACTTAGCAAGTCAGACAACATGGAAGCCTCTTTGGAAAATCC--CTCCACCTTCTTAGATTT-----CCTAAGACCTAACT-ACTATGCGATAGCTCAGGCCACAGAATATTATTTTTCCCCTGGAGCCAGTATCTGTTCTTTTTTTTCAAGAAATATCTTGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16240172 355 +  83442489 tgtttgaagccaggtcaact----gttaactgtacaactttgaacaagttccttcatctcccttagcctctgtttcttcatctgtgaaatgaggaaaataaaacATTGGTGGATTATGAATTAGAAAA---------------ACCTAGACTAATACCTGTAGTTACTCAGTAAATGGTAGTCCCTCAGCTCATCCTTGA-------ATGC-------ATCAGGAGAGCAAGCACTTAGCAAGTCAGACAACATGGAAGCCTCTTTGGAAAATCC--CTCCACCTTCTTAGATTT-----CCTAAGACCTAACT-ACTATGCGATAGCTCAGGCCACAGAATATTATTTTTCCCCTGGAGCCAGTATCTGTTCTTTTTTTTCAAGAAATATCTTGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4086860 353 +   4267968 tgtttgaagccaggtcaact----gttaactgtacaagtttgaacaagttccttcatctcccttagcctctgtttcttcatctgtgaaatgaggaaaataaAACATTGGTGGATTATGAACTAGAAAA---------------ACCTAGACTAATACCTGTAG-TACTCAGTAAATGGTAGTCCCTCAGCTCATCCTTGA-------ATGC-------ATCAGGAGAGCAAGCACTTAGCAAGTCAGACAACATGGAAGCCTCTTTGGAAAATCC--CTCCACCTTCTTAGATTT-----CCTAAGACCTAACT-ACTATGCGATAGCTCAGGCCACAGAATATTACTTTTCCCCTGGAGCCAGTAACTGTTC-TTTTTTTCAAGAAATATCTTGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2067219 354 -   2193130 tgcttgaagccaggtcaact----gttaactgtacaactttgagcaagttccttcatctcccttagcctctgtttcttcatctatgaaatgaggaaaataaAACATTGGTGGATTATGAATTAGAAAA---------------ATCTAGACTAATACCTGTAGTTACTCAGTAAATGGTAGTCCCTCAGCTCATCCTTGA-------ATGC-------ATCAGGAGAGCAAGCACTTAGCAAGTCAGACAACATGGAAGCCTCTTTGGAAAATCC--CTCTACCCTCTTAGGTTT-----CCCAAGACCTAACT-ACAATGTGATAGCTCAGGCCACAGAATATTCTTCCTCTCCTGGATCCAGTATCTGTTC-TTTTTTTCAAGAAATATCTTGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22850263 351 +  28711273 TGTTTGAAGTCAGGTAAAATGCAGGTtagctgtgtgacttggagcaagttacttcatctcccttagcctctgttttctcatctgtataatgggaataataaaactttgctggattatGAATTAGAAAATTATGAAAAA----TATCTAAGCTATTATCTGTAGATCCTTAGCAAATGACAGTCCCTGTGCTCATCCTTCT-------GCTCATCTTCAATCAGGAGAACAAGCACTTAGCAAGTCAGACAACTTGGAAGCCTCTTCAGAGAATCC--CTTGGCCCTCTTAGGTTT-----TCTAAGACTTAAC--ACAAGGGGATGGCTCTGGCTACAAAACACTAATTTCTTCTCATAGCCAGCTCCTGG-------------------------
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22118816 359 - 122082543 ------------------------CCTAGCTGTTGAACCCTGAACAAGCTACTTCATCTCACTTTGTCTCTTGTTGCCAGAC---AAAATGGACATGATGAAATGATG-CAGATTATGAATTAGATAGGAGGAGAAAAGATCTAGGTAGGTTCATACCTGTATATAATCAATAGATACTGGTTTCCCAGCTTATCTTCCTCCTTATCATGG-------ACCAGGGGAGTAAGCATCAAGCAAACAAGATAACTTGGTGGCTCCTTCCCAGAATCCTATCCTATCCTGTCTAACTGTGCCATCTGAGATCTAACTAACCATAAGTTAGTTCTGGTCATAAACTATTTGATCCCATCAAGAGCCAGGATCAGTT--GTTTGCCTAGCACACATATGAG
i mm10.chr11                C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21465420 29909 +  61074082 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e dasNov3.JH570468            496796 26659 -    852752 T
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28046752 69628 -  80997621 I
e rheMac8.chr16             30133917   3 -  77216781 I

a score=239798.000000
s hg38.chr17_JH159148v1_alt    24549 198 +     88070 --TATCCTCTTTGGTGTTCAG---CTCTTC-----GGAAAGTCTA-GCTCCCACTTTGGGGGACTACAATAACGTCTATTGTCATTATATCCAGTATACTTTTTAAGAGTGACCAGTTTCCT----TTATTTTCTTTCTCAAATCCTTATGTTTTCTTTTTCT-AATACTCTGATGTTGA-----------------------ATCTCCTCTGCTTCA----------------ACTTTGCCTC-----ACAACATTG
s panTro5.chr17             16335649 198 +  83181570 --TATCTTCTTTGGTGTTCAG---CTCTTC-----GGAAAGTCTA-GCTTCCACTTTGGGGGACTACAATAACGTCTATTGTCATTATATCCACTATGCTTTTTAAGAGTGACCAGTTTCCT----TTATTTTCTTTCTGAAATCCTTATGTTTTCTTTTTCT-AACACTCTGATGTTGA-----------------------ATCTCCTTTGCTTCA----------------ACTTTGCCTC-----ACAACATTG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16240527 198 +  83442489 --TATCTTCTTTGGTGTTCAG---CTCTTC-----GGAAAGTCTA-GCTCCCACTTTGGGGGACTACAATAACGTCTATTGTCATTATATCCACTATGCTTTTTAAGAGTGACCAGTTTCCT----TTATTTTCTTTCTCAAATCCTTATGTTTTCTTTTTCT-AACACTCTGATGTTGA-----------------------ATCTCCTCTGCTTCA----------------ACTTTGCCTC-----ACAACATTG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4087213 198 +   4267968 --TATCCTCTTTGGTGTTCAG---CTCTTC-----GGAAAGTCTA-GCTCCCACTTTGGGGGACTACAATAACGTCTATTGTCATTATATCCACTATGCTTTTTAAGAGTGACCAGTTTCCT----TTATTTTCTTTCTCAAATCCTTATGTTTTCTTTTTCT-AACACTCTGATGTTGA-----------------------ATCTCCTCTGCTTCA----------------ACTTTGCCTC-----ACAACACTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2067573 198 -   2193130 --TATCCGCTTTGGTGTTCAG---TTCTTC-----GGAAAGTCTA-GCTCCCACTTTGGGGGACTACAATAGCGTCTATTGTCATTATATCCACTATACTTTTTAAGAGCGACCAGtttcct----ttcttttctttctcaaatccttatgttttcttttTCT-AACACTCTGATGTTGA-----------------------ATCTCCTCAGCTTCA----------------ACTTTGCCTC-----ACAACATTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28116380 235 -  80997621 --TATTCTCTTTCTTATTCAGTTTCTCATC-----AGAAGATCCAGGATCCCTCATTTGGGAACCA-------GCCTATTGCC--CATCTTGAC-------TTTAAAAGTACATAATTTCTTCCCATTTTCTTCTTTCTACCATTTCTCCCCTTTTTTTTTCTGAAAACTCTGATTTCGACTTCCTTTAGCATAATTGACTTTATCTTCTTTATCTCATAAAACACAGGAAGTTATTTTGTTTCCTTTTATGGCCCAG
i macFas5.chr16             I 69628 C 0
s otoGar3.GL873537          22850614 193 +  28711273 --CATCCTCTGTATCATTCAG---ATCTTCTTAAAAAAAAATCTC--CTCCTACTTTGGGGAACTAAACTTACATCGAT------TATATCCACCATGGTTTCTAGGAGCCCCAACTTTCTT----TTCTTTTCTTCCTCAAATCCTTCTGTTTTC---TGCT-AATACTTTAGTGTTGA-----------------------ATCTCCTCAGCTTCA----------------GTTTTGCTAT-----ACAACATCC
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22119175 161 - 122082543 TATATTGCTTATATTGAT-AA---TTATTC-----AGAAGACCTG-GCTCCGTTTTTGGGGGACCACATTCATACCTGT------TACGTCTGCTAAGACTACTAGGGT------GTTTAAT----TTCTTCTCTTTCTCAAATCCCAC----------TTTT----------------------------------------ATTTCCTCAGCTTCA----------------GTTTTGCCTC-----AAAACATCC
i mm10.chr11                C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21465420 29909 +  61074082 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e dasNov3.JH570468            496796 26659 -    852752 T
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e rheMac8.chr16             30133917   3 -  77216781 I

a score=6946.000000
s hg38.chr17_JH159148v1_alt    24747 6 +     88070 AGGCAC
s panTro5.chr17             16335847 6 +  83181570 AGGCAC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16240725 6 +  83442489 AGGCAC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4087411 6 +   4267968 AGGCAC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2067771 6 -   2193130 AGGCAC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28116615 6 -  80997621 AGATCA
i macFas5.chr16             C 0 C 0
s otoGar3.GL873537          22850807 6 +  28711273 AGCAAC
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22119336 6 - 122082543 AGAGAC
i mm10.chr11                C 0 C 0
s canFam3.chr9              21495329 6 +  61074082 AGACTG
i canFam3.chr9              I 29909 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e dasNov3.JH570468            496796 26659 -    852752 T
e saiBol1.JH378271           1854343 45370 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e rheMac8.chr16             30133917 3 -  77216781 I

a score=268432.000000
s hg38.chr17_JH159148v1_alt    24753 159 +     88070 TGGTTGGATCAAAGCATTATATACCCATTGCTCAGTTACTTCAATTCTGAGGATTCTGT--AAATATGCACTACCCTTATAATCCTCTGATTGAGAAGCTAGGTTGATCCAGCATTT-GGAGCAC--------AGAAACTGTG-----------TCTTGTGCGCATTGC-AGGGTGTTTCTT
s panTro5.chr17             16335853 159 +  83181570 TGGTTGGATCAAAGCATTATATACCCATTGCTCAGTTACTTCAATTCTGAGGATTCTGT--AAATATGCACTACCCTTATAATCCTCTGATTGAGAAGCTAGGTTGATCCAGCATTT-GGAGCAC--------AGAAACTGTG-----------TCTTGTGCGCATTGC-AGGGTGTTTCTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16240731 159 +  83442489 TGGTTGGATCAAAGCATTATATACCCATTGCTCAGTTACTTCAATTCTGAGGATTCTGT--AAATATGCACTACCCTTATAATCCTCTGATTGAGAAGCTAGGTTGATCCAGCATTT-GGAGCAC--------AGAAACTGTG-----------TCTTGTGCGCATTGC-AGGGTGTTTCTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4087417 159 +   4267968 TGGTTGGATCAAAGCATTATATACCCATTGCTCAGTTACTTCAATTCTGAGGATTCTGT--AAATATGCACTACCCTTATAATCCTCTGATTGAGAAGCTAGGTTGATCCAGCATTT-GGAGCAC--------AGAAACTGTG-----------TCTTGTGCGAATTGC-AGGGTGTTTCTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2067777 159 -   2193130 TGGTTGGATCAAAGCATTATATACCCATTGCTCAGTTACTTCAATTCTGAGGATTCTGT--AAATATGCACTACCCTTATAATCCTCCGATTGGGAAGCTAGGTTGATCGAACATTT-GGAGCAC--------AGAAACTGTG-----------TCTTGTGTGCATTGC-AGGGTGCTTCTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28116621 168 -  80997621 TGATTTGATCAAAG-GGCATAAATCCATTGCATGGTTACCTTAATTCTTAGGGTTCTGTACAAATTTATCTTCCCTTAACGAAGTTCGTGTTAGGAAACAAAATTGCCCCAAAGTTTGGGAACCC--------AGGAAGCATGGTCCAA-----TCTTGTGTGCTTTGCAAAGGTGATTCTT
i macFas5.chr16             C 0 C 0
s saiBol1.JH378271           1899713 173 +   3513951 TGATTAGATCAAAG-GACATAAGTCCATTGCATGGTAACCTTAATTCTTAGGATTCTGTACAAATTTATCTTCCCTTAACAAAGTTCATGTTAGGAAACAAAATTGCCCCAAAGCTTGAGAACTC--------AGGAAGCATGGTCCAAATTCTACTTGTGTGCTTTGCAAAGGTAATTCTT
i saiBol1.JH378271          I 45370 C 0
s otoGar3.GL873537          22850813 161 +  28711273 TGGTTGTATCAAAGGGTTATATAATCACTGTTTAAGTACTTTAATTTCCAGGAGTCTGT-TAAGTCTATACCACCCTCATCATGCTCTAATTGGGAAGTTATGTTGATCCAGACTGTGTAGGCAC--------AAAAAATGTG-----------TCTTGTGTGCATGGA-AGGGTGTGTGTT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22119342 116 - 122082543 CAGGTAGATCACGGGGTTAT------------------CCTCA-----CAGAGCTCTGT------------------------------CCAGGAAAGCTAAGCTGATTCAGGGTTT-AGAGAACCCCCAAATCAGAAATGCA-----------CTCTAGCAACCTTAC-AGACTGTTTCTT
i mm10.chr11                C 0 C 0
s canFam3.chr9              21495335 166 +  61074082 TGATTGGATCAAAGCAGTCTATGCCTACTGCATGGATACCTCAACTATCAGGACTCTAC--AAACTTCTCTTCTCTGAACAATGTCCAGGTCAGGAGATCAAATTGCCTCAAAGTTTGAGAGCCC--------AGGAATTGTGGCCTGA-----GCTTATGTGCTTGCA-AGGCTGATTCTT
i canFam3.chr9              C 0 I 1030
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e dasNov3.JH570468            496796 26659 -    852752 T
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e rheMac8.chr16             30133917   3 -  77216781 I

a score=17851.000000
s hg38.chr17_JH159148v1_alt    24912 11 +     88070 AGTCT---TTTTTG
s panTro5.chr17             16336012 11 +  83181570 AGTCT---TTTTTG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16240890 11 +  83442489 AGTCT---TTTTTG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4087576 11 +   4267968 AGTCT---TTTTTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2067936 11 -   2193130 AGTCT---TTTTTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28116789 14 -  80997621 AATCCTAATTTCTG
i macFas5.chr16             C 0 C 0
s saiBol1.JH378271           1899886 14 +   3513951 AATCCTAATTTCTG
i saiBol1.JH378271          C 0 C 0
s otoGar3.GL873537          22850974 12 +  28711273 CATCTT--TTTTTG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22119458 13 - 122082543 AATCT-AGTTTTTG
i mm10.chr11                C 0 I 1745
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21495501 1030 +  61074082 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e dasNov3.JH570468            496796 26659 -    852752 T
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e rheMac8.chr16             30133917  3 -  77216781 I

a score=4242.000000
s hg38.chr17_JH159148v1_alt    24923 2 +     88070 TT
s panTro5.chr17             16336023 2 +  83181570 TT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16240901 2 +  83442489 TT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4087587 2 +   4267968 TT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2067947 2 -   2193130 TT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28116803 2 -  80997621 TT
i macFas5.chr16             C 0 C 0
s saiBol1.JH378271           1899900 2 +   3513951 TT
i saiBol1.JH378271          C 0 I 1918
s otoGar3.GL873537          22850986 2 +  28711273 TC
i otoGar3.GL873537          C 0 C 0
e mm10.chr11                22119471 1745 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21495501 1030 +  61074082 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e dasNov3.JH570468            496796 26659 -    852752 T
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e rheMac8.chr16             30133917 3 -  77216781 I

a score=7438.000000
s hg38.chr17_JH159148v1_alt    24925 5 +     88070 CAAGT
s panTro5.chr17             16336025 5 +  83181570 CAAGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16240903 5 +  83442489 CAAGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4087589 5 +   4267968 CAAGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2067949 5 -   2193130 CAAGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28116805 5 -  80997621 AAGGT
i macFas5.chr16             C 0 T 69945
s otoGar3.GL873537          22850988 5 +  28711273 CAGGT
i otoGar3.GL873537          C 0 C 0
e mm10.chr11                22119471 1745 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21495501 1030 +  61074082 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e dasNov3.JH570468            496796 26659 -    852752 T
e saiBol1.JH378271           1899902 1918 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e rheMac8.chr16             30133917 3 -  77216781 I

a score=455497.000000
s hg38.chr17_JH159148v1_alt    24930 392 +     88070 ATTCTGCA-TTTTTAGGTAGAAAAGTGACCTACATGTACAAGACATT-TCATTTTCATTTGTCAACAAGCAACTCAAATCATACACCTTCCCTAAAACTCAGACACCAGAGTTATTTCTACTTGTATTAAAAtctaa------ataataatgccctggatcaagattcagaacatctgggtattggacttaattctatcaatttctaactgtatgacctgaggccagtgatttttcccatttgtaatgtgcaaatgatagtctttgctttgcccaccttgtggggttactatgagattagaagagataatAGGAAATACAATACACATGCAAGGCCTTTTAAAGGAATAGCTGTGCAGAACAAAACCCCAATGTATGGTCCATGACAGGAAAGACTTTAG
s panTro5.chr17             16336030 392 +  83181570 ATTCTGCA-TTTTTAGGTAGAAAAGTGACCTACATGTACAAGACATT-TCATTTTCATTTGTCAACAAGCAACTCAAATCATACACCTTCCCTAAAACTCAGACACCAGAGTTACTTCTACTTGTATTAAAATCTAA------ATAATAATgccctggatcaagattcagaacatctgggtattggacttaattctatcaatttctaactgtatgacatgaggccagtgatttttcccatttgtaatgtgcaaatgatagtctttgctttgcccaccttgtggggttactatgagattagaagagataatAGGAAATACAATACACATGCAAGGCCTTTTAAAGGAATAGCTGTGCAGAACAAAACCCCAATGTATGGTCCATGACAGGAAAGACTTTAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16240908 392 +  83442489 ATTCTGCA-TTTTTAGGTAGAAAAGTGACCTACATGTACAAGACATT-TCATTTTCATTTGTCAACAAGCAACTCAAATCATACACCTTCCCTAAAACTCAGACACCAGAGTTACTTCTACTTGTATTAAAATCTAA------ATAATAATgccctggatcaagattcagaacatctgggtattggacttaattctatcaatttctaactgtatgacatgaggccagtgatttttcccatttgtaatgtgcaaatgatagtctttgctttgcccaccttgtggggttactatgagattagaagagataatAGGAAATACAATACACATGCAAGGCCTTTTAAAGGAATAGCTGTGCAGAACAAAACCCCAATGTATGGTCCATGACAGGAAAGACTTTAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4087594 392 +   4267968 ATTCTGCA-TTTTTAGGTAGAAAAGTGACCTACATGTACAAGACATT-TCATTTTCATTTGTCAACAAGCAACTCAAATCATACACCTTCCCTAAAACTCAGACACCAGAGTTACTTCTACTTGTATTAAAATCTAA------ATAATAATgccctggatcaagattcagaacatctgggtattggacttaattctatcaatttctaactgtatgacatgaggccagtgatttttcccatttgtaatgtgcaaatgatagtctttgctttgcccaccttgtggggttactatgagattagaagagataatAGGAAATACAATACACATGCAAGGCCTTTTAAAGGAATAGCTGTGCAGAACAAAACCCCAATGTATGGTCCATGACAGGAAAGAATTTAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2067954 392 -   2193130 ATTCTGCA-TTTTTAGGTAGAAAAGTGACCTACATGTACAAGACATT-TCATTTTCATTTCTCAACAAGCAACTCAAATCATACACCTTCCCTAAAACTCAGGCACTAGAGTTACTTCTACTTGTATTAAAATCTAA------ATAATAATGCCCTGGATCAAGATTCAGAACATCTGGGTATTGGACTTAATTCTATCAATTTCTAACTGTATGACATGAGGCCAGTGATTTTTCTCATTTGTAATGTGCAAACGATAGTCTTTGCTTTGCCCACCTTGTGGGGTTACTATGAGATTAGAAGAGATAATAGGAAATACAATACACATGCAAGGCCTTTTAAAGGAATAGCTGTGCAGAACAAAACTCCAATGTACGGTCCATGACAGGAAAGACTTTAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22850993 378 +  28711273 ATTCTGAATTTTTTAGGTAGAAAATTGACCTATATGTGCAAGGCATTATTTTTTGCATTGGTAGATAAGTGACTTCTATTGTACAACTTCCC-AAAACTCAGTAACCAGAGTTATTTC-------ATTAAAATCTAAGTCATTATAATTAGATAAtagatcaggagtcagaccatctggatactgaacccagttctatcaattagtaagtgtaggacatgaagcaaatgacttttgccatttgtaacatggaaatgatcatcttggctctgcccacct-------------TGAGATTAGAAGCAGGACTATGAAATGCCACACACATGCAAGGCCTTTGAAAGGAATAGCCGTGCA-AACATAACCCCACTATACGGTAGATGATAGCAAAGACTTTAG
i otoGar3.GL873537          C 0 C 0
e mm10.chr11                22119471 1745 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21495501 1030 +  61074082 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e dasNov3.JH570468            496796 26659 -    852752 T
e saiBol1.JH378271           1899902 1918 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917   3 -  77216781 I

a score=510363.000000
s hg38.chr17_JH159148v1_alt    25322 580 +     88070 GAAGATAATTCTTTTTTTTAAAATAAtttttttattatactgtaagtttagggtacatgtgcacaacatgcaggtttgttacataggtatacatgtgccatgttggtttgccgcacccgttaactcgtcatttacattaggtatttctcctaatgctatccctccccctgacccccaccccatgacaggccctggggtgtggtgttccctgccctttgtccaagtgttctcattgttcaattcccacctatgagggagaacatgcggtatttggttttctgtccttgtgatagtttgcttagaatgatggtttccagctgcatccatgtccctgcaaaggacatgaactcatccttttttatggctgcatagtattccatggtgtatatgtgccata-tttcttaatccagtctatcactgatggacatttgggttggttccacgtctttgctattgtgaatagtgccgcagcaaacatacgtgtgcatgcgtctttatagtagcatgatttataagcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctagttctagatcctt
s panTro5.chr17             16336422 579 +  83181570 GAAGATAATTCTTTTTTTT-AAATAAtttttttattatactgtaagtttagggtacatgtgcacaatgtgcaggtttgttacataggcatacatgtgccatgttggtttgccatacccgttaactcgtcatttacattaggtatttctcctaatgctatccctccccctgactcccaccccatgacaggccctggggtgtggtgttccctgccctttgtccaagtgttctcattgttcaattcccacctatgagggagaacatgcggtatttggttttctgtccttgtgatagtttgcttagaatgatggtttccagctgcatccatgtccctgcaaaggacatgaactcatccttttttatggctgcatagtattccatggtgcatatgtgccata-tttcttaatccagtctatcactgatggacatttgggttggttccacgtctttgctattgtgaatagtgcctcagcaaacatacgtgtgcatgcgtctttatagtagcatgatttataagcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctagttctagatcctt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16241300 579 +  83442489 GAAGATAATTCTTTTTTTA-AAATAAtttttttattatactgtaagtttagggtacatgtgcacaatgtgcaggtttgttacataggcatacatgtgccatgttggtttgccacacccgttaactcgtcatttacattaggtatttctcctaatgctatccctccccctgactcccaccccatgacaggccctggggtgtggtgttccctgccctttgtccaagtgttctcattgttcaattcccacctatgagggagaacatgcggtatttggttttctgtccttgtgatagtttgcttagaatgatggtttccagctgcatccatgtccctgcaaaggacatgaactcatccttttttatggctgcatagtattccatggtgtatatgtgccata-tttcttaatccagtctatcactgatggacatttgggttggttccacgtctttgctattgtgaatagtgcctcagcaaacatacgtgtgcatgcatctttatagtagcatgatttataagcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctagttctagatcctt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4087986 579 +   4267968 GAAGATAATTCTTTTTTTA-AAATAAtttttttattatactgtaagtttagggtacatgtgcacaatgtgcagttttgttacataggtatacatgtgccatgttggtttgctgcaccggttaactcgtcatttacattaggtatttctcctaatgctatccctccccgtgacccccaccccatgacaggccctggtgtgtggtgttccctgccctttgtccaagtgttctcattgttcaattcccacctgtgagggagaacatgcggtatttggttttctgtccttgtgatagtttgcttagaatgatggtttccagctgcatccatgtccctgcaaaggacatgaactcatccttttttatggctgcatagtattccatggtgtatatgtgccata-tttcttaatccagtctatcactgatggacatttgggttggttccacgtctttgctattgtgaatagtgccgcagcaaacatacgtgtgcatgcgtctttatagtagcatgatttataagcctttgggtacatacccagtaataggattgctgggtcaaatggtatttctagttctagatcctt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2068346 579 -   2193130 GAAGATAATTCTTtttttt-tta-aatttttaaattatacttcaagtctagggtacatgtgcacaacgtgcaggtttgttacataggtatacctgtgccatgtttgtttgctgcacccgttaactcatcatttacattaggtatttctcctaatgctatccctccccctgacccccaccccatgacaggccctggggtgtggtgttccctgccctttgtccaagtgttctcattgttcaatttccacctatgagtgagaacatgtggtgtttggttttctgtccttgtgatagtttgctcagaatgatggtttccagttgcatccatgtccctacaaaggacatgaactcatccttttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcatagttggacatttgggttggttccaagtctttgctattgtgaatagtgctgcagcaaacatacaggtgcatgaatctttatagtagcatgatttataatcctctgggtatatacccagtaatgggattgctgggtcaaatggtatttctagttctagatcctt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
e mm10.chr11                22119471 1745 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21495501 1030 +  61074082 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e dasNov3.JH570468            496796 26659 -    852752 T
e otoGar3.GL873537          22851371   0 +  28711273 C
e saiBol1.JH378271           1899902 1918 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917   3 -  77216781 I

a score=1500.000000
s hg38.chr17_JH159148v1_alt    25902 1 +     88070 g
s panTro5.chr17             16337001 1 +  83181570 g
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16241879 1 +  83442489 g
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4088565 1 +   4267968 g
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2068925 1 -   2193130 g
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22851371 1 +  28711273 G
i otoGar3.GL873537          C 0 C 0
e mm10.chr11                22119471 1745 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21495501 1030 +  61074082 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e dasNov3.JH570468            496796 26659 -    852752 T
e saiBol1.JH378271           1899902 1918 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=61181.000000
s hg38.chr17_JH159148v1_alt    25903 45 +     88070 aagaTAATTCTAACTGATTATGGAGGTGAGAAGCAGGACACAGGA
s panTro5.chr17             16337002 45 +  83181570 aagaTAATTCTAACTGATTATGGAGGTGAGAAGCAGGACACAGGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16241880 45 +  83442489 aagaTAATTCTAACTGATTATGGAGGTGAGAAGCAGGACACAGGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4088566 45 +   4267968 aagaTAATTCTAACTGATTATGGAGGTGAGAAGCAGGACACAGGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2068926 45 -   2193130 aggaTATTTCTAACTGATTATGGAGGTGAGAAGCAGGACACAGGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22851372 45 +  28711273 AAGATAATTCTAAGTGAACATGAAAGTGAGAAGCAGGACACAGAA
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              39590140 37 -  61074082 AAGATACTTGCATCTAAAGATGA-------AAGCAGGAGA-AAGA
i canFam3.chr9              n 1030 C 0
e mm10.chr11                22119471 1745 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e dasNov3.JH570468            496796 26659 -    852752 T
e saiBol1.JH378271           1899902 1918 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=44430.000000
s hg38.chr17_JH159148v1_alt    25948 42 +     88070 ATAATGAGTACATT--GATATAACGTGGTTGATATTGGGCGTTT
s panTro5.chr17             16337047 42 +  83181570 ATAATGAGTACATT--GATATAACGTGGTTGATATTGCGCGTTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16241925 42 +  83442489 ATAATGAGTACATT--GATATAACGTGGTTGATATTGCGCGTTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4088611 42 +   4267968 ATAATGAGTACATT--GATATAACGTGGTTGATATTGGGTGTTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2068971 42 -   2193130 ATAATGAGTACGTT--GATATAACGTGGTTGATATTGGGCGTTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22851417 41 +  28711273 CTAACCAGTGCCCT--GAGATAAGATGGGT-ATATTGATCATTT
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              39590177 40 -  61074082 ACCACGAGCACGTT--GAAA-AATATATATAATTATGAA-GTTT
i canFam3.chr9              C 0 T 444
s dasNov3.JH570468            470137 32 -    852752 ATAATGAGTACACTAGGAAAAAACATGATTGT------------
i dasNov3.JH570468          T 26659 C 0
e mm10.chr11                22119471 1745 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e saiBol1.JH378271           1899902 1918 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=2373.000000
s hg38.chr17_JH159148v1_alt    25990 4 +     88070 GCAG--
s panTro5.chr17             16337089 4 +  83181570 GCAG--
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16241967 4 +  83442489 GCAG--
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4088653 4 +   4267968 GCAG--
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069013 4 -   2193130 GCAG--
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22851458 4 +  28711273 GCGG--
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            470169 4 -    852752 --AAAT
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22119471 1745 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              39590217 444 -  61074082 T
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e saiBol1.JH378271           1899902 1918 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=38749.000000
s hg38.chr17_JH159148v1_alt    25994 27 +     88070 CAATATTGATCAGTTGCAGAGACTTAA
s panTro5.chr17             16337093 27 +  83181570 CAATATTGATCAGTTGCAGAGACTTAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16241971 27 +  83442489 CAATATTGATCAGTTGCAGAGACTTAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4088657 27 +   4267968 CAATATTGATCAGTTGCAGAGACTTAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069017 27 -   2193130 GAATATTGATCAGTTGCAGAGACTTAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22851462 27 +  28711273 TGATGTTGATCAACTGCAAAGATTTGA
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              21496531 26 +  61074082 CAGTACTGGTCA-CTGCGGAGAGCTAA
i canFam3.chr9              I 1030 C 0
s dasNov3.JH570468            470173 25 -    852752 AAATAGGAACC--TGGAAGAAACCTAA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22119471 1745 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e saiBol1.JH378271           1899902 1918 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=241253.000000
s hg38.chr17_JH159148v1_alt    26021 182 +     88070 GAGAACAGTCTTAGGGATTTGATATTTTAAGATTGTTAGAGGGAA---AA---GGGGATGACAATTTTTCCTTGGCTGAGAT---------------------------CTTGAGTTCATGTCAAGGATCCATGAAGATGACT----AGCAGC-------------------TGGCACTCTGAT--ATATAGGAAATAAGGA-----AGAGAAAAATCAAAGTGAAGCCAGCTCCA---CTTCACTAA
s panTro5.chr17             16337120 182 +  83181570 GAGAACAGTCTTAGGGATTTGATATTTTAAGATTGTTAGAGGGAA---AA---GGGGATGACAATTTTTCCTTGGCTGAGAT---------------------------CTTGAGTTCATGTCAAGGATCCATGAAGATGACT----AGCAGC-------------------TGGCACTCTGAT--ATATAGGAAATAAGGA-----AGAGAAAAATCAAAGTGAAGCCAGCTCCA---CTTCACTAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16241998 182 +  83442489 GAGAACAGTCTTAGGGATTTGATATTTTAAGATTGTTAGAGGGAA---AA---GGGGATGACAATTTTTCCTTGGCTGAGAT---------------------------CTTGAGTTCATGTCAAGGATCCATGAAGATGACT----AGCAGC-------------------TGGCACTCTGAT--ATATAGGAAATAAGGA-----AGAGAAAAATCAAAGTGAAGCCAGCTCCA---CTTCACTAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4088684 182 +   4267968 GAGAACAGTCTTAGGGATTTGATATTTTAAGACTGTTAGAGGGAA---AA---GGGGATGACAATTTTTCCTTGGCTGAGAT---------------------------CTTGAGTTCATGTCAAGGATCCACGAAGATGACT----AGCAGC-------------------TGGCACTCTGAT--ATATAGGAAATAAGGA-----AGAGAAAAATCAAAGTGAAGCCAGCTCCA---CTTCACTAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069044 182 -   2193130 GAGAACAGTCTTAGGGATTTGATATTTTAAGATTGTTAGAGGGAA---AG---GGGGATGACAATTTTTCCTTGGCTGAGAT---------------------------CTTGAGTTCATGTCAAGGATCCATGAAGATAACT----AGCAGC-------------------TGGCACTCTGAC--ATATAGGAAATGAGGA-----AGAGAAAAATCAAAGTGAAGCCAGCTCCA---CTTCACTAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s saiBol1.JH378271           1901820 184 +   3513951 ATATGCAGTCATAAGAATTT--CTTTTTAAGTTCCATAGGGGCAA---AA---GCTGATGATCA-CTTCCTGAGGCTGAGAC---------------------------CATGTATCCATGTCAATTAG--GTGGAGCTGACTGACCATCATC-------------------TGGTACATTAAT--CCAGAGGAAATGAAGA-----ACAATAAAATTAAAGAAAAGTAGACTGTATACCTTCAGTAG
i saiBol1.JH378271          I 1918 T 33348
s otoGar3.GL873537          22851489 211 +  28711273 GAGAACAGTCCTAAGGATTC-ATTTTTGGGGGTTCTTAGAGGGAG---AAGGGGGGGGTGGCAACTTTTCTAAGGCTGAGATTTCATGATTTCATGTTTAAGGCTGAGATTTGATTTCATGTCAAGGGCTGATGAACCTGACT----AGCGGC-------------------TGGAACACCCAT--CCACAGGAAATAAGGA-----AGACAAGACTTAAAGGGAAGCAGGCTCCA---CTTCACCAA
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              21496557 194 +  61074082 CTATGCACTCATAAGAATGTG----TTTATATGCTGTAGAAAGAAGTGAA---GGTGATGATCACTTTTTGGAGACTGAGAG---------------------------TGTGAATCAGTG------------GATGTTGACC----AGCATCTGGGGTTGACCAAATGTTGTGGCTCAGCAATTGCTATAGTAAACCAGAGATACTAGAATACAATCAAATTGAAGTAGATTGCA---TTTCCTCC-
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            470198 175 -    852752 GAAAATTTTCATAAGGATTTG--TTTTGGGGTTATTTTGAGGGAA---AG---AGTGATGGTCCATTTTC-AAGGCAGAGTC---------------------------AATGTCTGCAGGTCAAGGACACCTGAAGAACACC----TTCAAT-------------------GTTCACAGAGAG--AAGCAGCAAATAAAGA-----AGAT----ATCAGAGTGAAGCTGAATGCA---CCCTGCAAA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22119471 1745 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917   3 -  77216781 I

a score=31788.000000
s hg38.chr17_JH159148v1_alt    26203 37 +     88070 GCAGCCTCACAA------TTTAACAATA--------TAACACATCAAATG-T
s panTro5.chr17             16337302 37 +  83181570 GCAGCCTCACAA------TTTAACAATA--------TAACACATCAAATG-T
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242180 37 +  83442489 GCAGCCTCACAA------TTTAACAATA--------TAACACATCAAATG-T
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4088866 37 +   4267968 GCAGCCTCACAA------TTTAACAATA--------TAACACATCAAATG-T
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069226 37 -   2193130 GCAGCCTCACAA------TTTAACAATA--------TAACACATCAGATG-T
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22851700 38 +  28711273 GAAGCCTCACAG------TTTAATGAGA--------AAACTAACAGCATGTT
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              21496751 43 +  61074082 GTAGACTCATGAGCATTGTTGAGAAAGA--------TGACAGGGGCAGTG-T
i canFam3.chr9              C 0 T 17021
s dasNov3.JH570468            470373 45 -    852752 GCTGAATCATAAAGAC--TTTAATCACAAAGATGAGTAATAGAAAAA-----
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22119471 1745 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e saiBol1.JH378271           1902004 33348 +   3513951 T
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=9789.000000
s hg38.chr17_JH159148v1_alt    26240 6 +     88070 TTGGCA
s panTro5.chr17             16337339 6 +  83181570 TTGGCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242217 6 +  83442489 TTGGCA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4088903 6 +   4267968 TTGGCA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069263 6 -   2193130 TTGGCA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22851738 6 +  28711273 TTGGCA
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            470418 5 -    852752 -TGGTG
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22119471 1745 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e canFam3.chr9              21496794 17021 +  61074082 T
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e saiBol1.JH378271           1902004 33348 +   3513951 T
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=33969.000000
s hg38.chr17_JH159148v1_alt    26246 27 +     88070 ACAGTATGTTGGTTGTCAACAAAGTCA--------------------------
s panTro5.chr17             16337345 27 +  83181570 ACAGTATGTTGGTTGTCAACAAAGTCA--------------------------
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242223 27 +  83442489 ACAGTATGTTGGTTGTCAACAAAGTCA--------------------------
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4088909 27 +   4267968 ACAGTATGTTGGTTGTCAACAAAGTCA--------------------------
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069269 27 -   2193130 ACAGTATACTGGTTGTCAACAAAGTCA--------------------------
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22851744 23 +  28711273 ACAGCAT----GTTGTCAGCAAAACCA--------------------------
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              21479773 27 +  61074082 ACAGCAGGTTGGTTGGCAGCAAGGCTG--------------------------
i canFam3.chr9              T 17021 I 115
s dasNov3.JH570468            470423 53 -    852752 ATGACATGTTGGAGGTTACCAAAACCTGCTGAAGGAGCTTGTGCCAGTATCTG
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22119471 1745 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e saiBol1.JH378271           1902004 33348 +   3513951 T
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=13258.000000
s hg38.chr17_JH159148v1_alt    26273 17 +     88070 GGGGAGTG----------------GGAGTTAGT
s panTro5.chr17             16337372 17 +  83181570 GGGGAGTG----------------GGAGTTAGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242250 17 +  83442489 GGGGAGTG----------------GGAGTTAGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4088936 17 +   4267968 GGGGAGTG----------------GGAGTTAGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069296 17 -   2193130 GGGGAGTG----------------GGAGTTAGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22851767  7 +  28711273 GGAG--------------------------AGT
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              21479915 17 +  61074082 GTGGAGCA----------------GCAACTGGA
i canFam3.chr9              I 115 I 3
s dasNov3.JH570468            470476 33 -    852752 GGGAAGTGACTGGTTGATTGTGAAAAGGTTGGT
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22119471 1745 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e saiBol1.JH378271           1902004 33348 +   3513951 T
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=-1159.000000
s hg38.chr17_JH159148v1_alt    26290  6 +     88070 ----------TCATTG----
s panTro5.chr17             16337389  6 +  83181570 ----------TCATTG----
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242267  6 +  83442489 ----------TCATTG----
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4088953  6 +   4267968 ----------TCATTG----
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069313  6 -   2193130 ----------TCGTTG----
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22851774  6 +  28711273 ----------TTATTG----
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22121216  6 - 122082543 ----------tcatca----
i mm10.chr11                I 1745 C 0
s canFam3.chr9              21479935  3 +  61074082 ----------GCA-------
i canFam3.chr9              I 3 C 0
s dasNov3.JH570468            470509 20 -    852752 CTATGCCAGATGATCCTATG
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e saiBol1.JH378271           1902004 33348 +   3513951 T
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=5482.000000
s hg38.chr17_JH159148v1_alt    26296 2 +     88070 GT
s panTro5.chr17             16337395 2 +  83181570 GT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242273 2 +  83442489 GT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4088959 2 +   4267968 GT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069319 2 -   2193130 GT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s saiBol1.JH378271           1868656 2 +   3513951 GC
i saiBol1.JH378271          T 33348 C 0
s otoGar3.GL873537          22851780 2 +  28711273 GT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22121222 1 - 122082543 -t
i mm10.chr11                C 0 I 1
s canFam3.chr9              21479938 2 +  61074082 GC
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            470529 2 -    852752 GT
i dasNov3.JH570468          C 0 I 18
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e manLeu1.NW_012106252v1     2173009 61605 +   4244037 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2196051 9016 +   4569836 I
e chlSab2.chr16             64933299 2808 +  75148670 I
e cerAty1.NW_012006043v1     1988677 2805 -   8458610 I
e macNem1.NW_012014910v1     2103372 29563 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=25037.000000
s hg38.chr17_JH159148v1_alt    26298 3 +     88070 AAG
s panTro5.chr17             16337397 3 +  83181570 AAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242275 3 +  83442489 AAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4088961 3 +   4267968 AAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069321 3 -   2193130 AAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2132935 3 +  10377808 AAG
i macNem1.NW_012014910v1    I 29563 C 0
s cerAty1.NW_012006043v1     1991482 3 -   8458610 AAG
i cerAty1.NW_012006043v1    I 2805 C 0
s chlSab2.chr16             64936107 3 +  75148670 AAG
i chlSab2.chr16             I 2808 C 0
s manLeu1.NW_012106252v1     2234614 3 +   4244037 AAG
i manLeu1.NW_012106252v1    I 61605 C 0
s colAng1.NW_012122154v1     2205067 3 +   4569836 AAG
i colAng1.NW_012122154v1    I 9016 C 0
s saiBol1.JH378271           1868658 3 +   3513951 AGG
i saiBol1.JH378271          C 0 C 0
s otoGar3.GL873537          22851782 3 +  28711273 AAG
i otoGar3.GL873537          C 0 I 2450
s mm10.chr11                22121224 3 - 122082543 atG
i mm10.chr11                I 1 C 0
s canFam3.chr9              21479940 3 +  61074082 AAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            470549 3 -    852752 AAG
i dasNov3.JH570468          I 18 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e calJac3.chr5              46145330 277 - 159171411 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=52419.000000
s hg38.chr17_JH159148v1_alt    26301 6 +     88070 GCTGGT
s panTro5.chr17             16337400 6 +  83181570 GCTGGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242278 6 +  83442489 GCTGGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4088964 6 +   4267968 GCTGGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069324 6 -   2193130 TCTGGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2132938 6 +  10377808 GCTGGC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991485 6 -   8458610 GCTGGC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936110 6 +  75148670 GCTGGC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2234617 6 +   4244037 GCTGGC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205070 6 +   4569836 GCTGGC
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1868661 6 +   3513951 GCTGGC
i saiBol1.JH378271          C 0 C 0
s otoGar3.GL873537          22854235 6 +  28711273 GCTGGC
i otoGar3.GL873537          I 2450 C 0
s mm10.chr11                22121227 6 - 122082543 GCTGGC
i mm10.chr11                C 0 C 0
s canFam3.chr9              21479943 6 +  61074082 GCTGGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            470552 6 -    852752 GCTGGC
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1905460 3045 +   1920343 I
e calJac3.chr5              46145330 277 - 159171411 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=55875.000000
s hg38.chr17_JH159148v1_alt    26307 5 +     88070 AGCAG
s panTro5.chr17             16337406 5 +  83181570 AGCAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242284 5 +  83442489 AGCAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4088970 5 +   4267968 AGCAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069330 5 -   2193130 AGCAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2132944 5 +  10377808 AGCAG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991491 5 -   8458610 AGCAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936116 5 +  75148670 AGCAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2234623 5 +   4244037 AACAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205076 5 +   4569836 AGCAG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1868667 5 +   3513951 AGCAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1908505 5 +   1920343 AGCAG
i cebCap1.NW_016107730v1    I 3045 C 0
s otoGar3.GL873537          22854241 5 +  28711273 AGCAG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22121233 5 - 122082543 AGCAG
i mm10.chr11                C 0 C 0
s canFam3.chr9              21479949 5 +  61074082 AGCAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            470558 5 -    852752 AGCAG
i dasNov3.JH570468          C 0 I 279
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e calJac3.chr5              46145330 277 - 159171411 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=124206.000000
s hg38.chr17_JH159148v1_alt    26312 13 +     88070 CTGGACTCACAGT
s panTro5.chr17             16337411 13 +  83181570 CTGGACTCACAGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242289 13 +  83442489 CTGGACTCACAGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4088975 13 +   4267968 CTGGACTCACAGC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069335 13 -   2193130 CTGGACTCACAGC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2132949 13 +  10377808 CTGGACACACAGC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991496 13 -   8458610 CTGGACACACAGC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936121 13 +  75148670 CTGGACACACAGC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2234628 13 +   4244037 CTAGACACACAGC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205081 13 +   4569836 CTGGACACACAGC
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1868672 13 +   3513951 CTGGACACACAGC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1908510 13 +   1920343 CTGGACCCACAGC
i cebCap1.NW_016107730v1    C 0 C 0
s otoGar3.GL873537          22854246 13 +  28711273 CTGGATCCACAGC
i otoGar3.GL873537          C 0 I 117
s mm10.chr11                22121238 13 - 122082543 CTAGACCCACAGC
i mm10.chr11                C 0 C 0
s canFam3.chr9              21479954 13 +  61074082 CTGGACACACAGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            470842 13 -    852752 CTGGACCCACAGC
i dasNov3.JH570468          I 279 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e calJac3.chr5              46145330 277 - 159171411 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=259502.000000
s hg38.chr17_JH159148v1_alt    26325 33 +     88070 AGGTGGGCTGGCAGCAGGGTGGGCTGCAGCAGG
s panTro5.chr17             16337424 33 +  83181570 AGGTGGGCTGGCAGCAGGGTGGGCTGCAGCAGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242302 33 +  83442489 AGGTGGGCTGGCAGCAGGGTGGGCTGCAGCAGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4088988 33 +   4267968 AGGTGGGCTGGCAGCAGGGTGGGCTGCAGCAGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069348 33 -   2193130 AGGTGGGCTGGCAGCAGGATGGGCTGCAGCAGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2132962 33 +  10377808 AGGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991509 33 -   8458610 AGGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936134 33 +  75148670 AGGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2234641 33 +   4244037 AGGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205094 33 +   4569836 AGGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1868685 33 +   3513951 AGGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1908523 33 +   1920343 AGGTGGGCCGGCAGCAGGGTGTGCTGCAGCAGG
i cebCap1.NW_016107730v1    C 0 I 181
s otoGar3.GL873537          22854376 33 +  28711273 AGCTGGGCTGGCAGCAGGGTGTGCTACAGCAGG
i otoGar3.GL873537          I 117 C 0
s mm10.chr11                22121251 29 - 122082543 AGCAGAGATGGTGGCACACTGTGCTGCAG----
i mm10.chr11                C 0 C 0
s canFam3.chr9              21479967 18 +  61074082 ATGTGGGCTTGCAGCAGG---------------
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            470855 33 -    852752 AGGTGGGCTGGCAGCAGGGAGTGCTGCAACAGG
i dasNov3.JH570468          C 0 I 15
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e calJac3.chr5              46145330 277 - 159171411 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=64303.000000
s hg38.chr17_JH159148v1_alt    26358 10 +     88070 TGGTCACACA
s panTro5.chr17             16337457 10 +  83181570 TGGTCACACA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242335 10 +  83442489 TGGTCACACA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089021 10 +   4267968 TGGTCACACA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069381 10 -   2193130 TGGTCACACA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2132995 10 +  10377808 TGGTCACACA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991542 10 -   8458610 TGGTCACACA
i cerAty1.NW_012006043v1    C 0 I 28572
s chlSab2.chr16             64936167 10 +  75148670 TGGTCACACA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2234674 10 +   4244037 TGGTCACACA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205127 10 +   4569836 TGGTCACACA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1868718 10 +   3513951 TGGTCACACA
i saiBol1.JH378271          C 0 C 0
s otoGar3.GL873537          22854409 10 +  28711273 TGGTGACAGA
i otoGar3.GL873537          C 0 I 15
s mm10.chr11                22121280  1 - 122082543 ---------A
i mm10.chr11                C 0 I 1
s dasNov3.JH570468            470903 10 -    852752 TGGGCACACA
i dasNov3.JH570468          I 15 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1908556 181 +   1920343 I
e canFam3.chr9              21479985  0 +  61074082 C
e calJac3.chr5              46145330 277 - 159171411 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=9100.000000
s hg38.chr17_JH159148v1_alt    26368 1 +     88070 G
s panTro5.chr17             16337467 1 +  83181570 G
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242345 1 +  83442489 G
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089031 1 +   4267968 G
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069391 1 -   2193130 G
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2133005 1 +  10377808 G
i macNem1.NW_012014910v1    C 0 I 9
s cerAty1.NW_012006043v1     2020124 1 -   8458610 G
i cerAty1.NW_012006043v1    I 28572 C 0
s chlSab2.chr16             64936177 1 +  75148670 G
i chlSab2.chr16             C 0 I 9
s manLeu1.NW_012106252v1     2234684 1 +   4244037 G
i manLeu1.NW_012106252v1    C 0 I 9
s colAng1.NW_012122154v1     2205137 1 +   4569836 G
i colAng1.NW_012122154v1    C 0 I 9
s saiBol1.JH378271           1868728 1 +   3513951 G
i saiBol1.JH378271          C 0 C 0
s otoGar3.GL873537          22854434 1 +  28711273 G
i otoGar3.GL873537          I 15 C 0
s mm10.chr11                22121282 1 - 122082543 G
i mm10.chr11                I 1 C 0
s dasNov3.JH570468            470913 1 -    852752 G
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1908556 181 +   1920343 I
e canFam3.chr9              21479985 0 +  61074082 C
e calJac3.chr5              46145330 277 - 159171411 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=2903.000000
s hg38.chr17_JH159148v1_alt    26369 2 +     88070 AC
s panTro5.chr17             16337468 2 +  83181570 AC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242346 2 +  83442489 AC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089032 2 +   4267968 AC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069392 2 -   2193130 AT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     2020125 2 -   8458610 AT
i cerAty1.NW_012006043v1    C 0 C 0
s saiBol1.JH378271           1868729 2 +   3513951 GT
i saiBol1.JH378271          C 0 I 15
s otoGar3.GL873537          22854435 2 +  28711273 GT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22121283 2 - 122082543 AT
i mm10.chr11                C 0 C 0
s canFam3.chr9              21479985 1 +  61074082 -T
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            470914 2 -    852752 GT
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1908556 181 +   1920343 I
e manLeu1.NW_012106252v1     2234685 9 +   4244037 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2205138 9 +   4569836 I
e chlSab2.chr16             64936178 9 +  75148670 I
e macNem1.NW_012014910v1     2133006 9 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=255245.000000
s hg38.chr17_JH159148v1_alt    26371 63 +     88070 GGTCCTGTAGCAGGTGATTGCACAGCAAATTGGGCCAC---------------AGCAAGGCGGGCGGGAGCTGGACCC
s panTro5.chr17             16337470 63 +  83181570 AGTCCTGTAGCAGGTGATTGCACAGCAAGTTGGGCCAC---------------AGCAAGGCGGGCGGGAGCTGGACCC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242348 63 +  83442489 AGTCCTGTAGCAGGTGATTGCACAGCAAGTTGGGCCAC---------------AGCAAGGCGGGCGGGAGCTGGACCC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089034 63 +   4267968 AGTCCTGTAGCAGGTGATTGCACAGCAAGTTGGGCCAC---------------AGCAAGGCGGGCAGGAGCTGGACCC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069394 63 -   2193130 GGTCCTGTAGCAGGTGATTGCACAGCAAGTTGGGCGAC---------------AGCAAGGCAGGCAGGAGCTGGACCC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     2020127 63 -   8458610 GGGCTGGCAGCAGGTGTTTTGACAGCAAATTGGGTGGC---------------AGCAAGGCTGGCAGCAGCTGGACAC
i cerAty1.NW_012006043v1    C 0 C 0
s saiBol1.JH378271           1868746 63 +   3513951 AGTCCTGCAGCAGGTGTTTTGACAGCAAGTTGGGCGGC---------------AGCAAGGCTGGCAGCAGCTGGACAC
i saiBol1.JH378271          I 15 C 0
s cebCap1.NW_016107730v1     1908737 63 +   1920343 GGTCCTGCAGCAGGTGTTTTGACAGCAAGTTGGGCGGC---------------AGCAAGGCTGGTAGCAGCTGGACAC
i cebCap1.NW_016107730v1    I 181 C 0
s otoGar3.GL873537          22854437 63 +  28711273 GGTCCTGCAGCAGGTGGTTGGACAGCAAGTGGGGCGGC---------------AGCAGGGCTGGCAGCAGCTGGACTC
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22121285 78 - 122082543 AGTCCTGCAGAAGGTGGCTTCACAGCAAGTTGGTTGGCCCCAGTTGGTCTGGTAACAGAGAGTGAGGCAACTGAGAGT
i mm10.chr11                C 0 C 0
s canFam3.chr9              21479986 66 +  61074082 GGTCCTACAGCAGGTGGTTTGACAGCAAGTTGGGCGGC------------AGCAGCAAGGTTGGCAGCAGCTGGACCC
i canFam3.chr9              C 0 I 91
s dasNov3.JH570468            470916 63 -    852752 TGGCTGGCAGCAGGTGGTCCTACAGCAGAGTGGGCGGC---------------AGCAAGGCTGGCAGCAGCTAGGCCC
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e manLeu1.NW_012106252v1     2234685  9 +   4244037 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2205138  9 +   4569836 I
e chlSab2.chr16             64936178  9 +  75148670 I
e macNem1.NW_012014910v1     2133006  9 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=3785.000000
s hg38.chr17_JH159148v1_alt    26434 1 +     88070 A
s panTro5.chr17             16337533 1 +  83181570 A
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242411 1 +  83442489 A
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089097 1 +   4267968 A
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069457 1 -   2193130 A
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     2020190 1 -   8458610 A
i cerAty1.NW_012006043v1    C 0 T 28629
s saiBol1.JH378271           1868809 1 +   3513951 A
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1908800 1 +   1920343 A
i cebCap1.NW_016107730v1    C 0 C 0
s otoGar3.GL873537          22854500 1 +  28711273 A
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22121363 1 - 122082543 G
i mm10.chr11                C 0 I 12
s dasNov3.JH570468            470979 1 -    852752 A
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e canFam3.chr9              21480052 91 +  61074082 I
e manLeu1.NW_012106252v1     2234685 9 +   4244037 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2205138 9 +   4569836 I
e chlSab2.chr16             64936178 9 +  75148670 I
e macNem1.NW_012014910v1     2133006 9 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=59460.000000
s hg38.chr17_JH159148v1_alt    26435 6 +     88070 CAGCAG
s panTro5.chr17             16337534 6 +  83181570 CAGCAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242412 6 +  83442489 CAGCAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089098 6 +   4267968 CAGCAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069458 6 -   2193130 CAGCCG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2133015 6 +  10377808 CAGCAG
i macNem1.NW_012014910v1    I 9 C 0
s cerAty1.NW_012006043v1     1991562 6 -   8458610 CAGCAG
i cerAty1.NW_012006043v1    T 28629 C 0
s chlSab2.chr16             64936187 6 +  75148670 CAGCAG
i chlSab2.chr16             I 9 C 0
s manLeu1.NW_012106252v1     2234694 6 +   4244037 CAGCAG
i manLeu1.NW_012106252v1    I 9 C 0
s colAng1.NW_012122154v1     2205147 6 +   4569836 CAGCAG
i colAng1.NW_012122154v1    I 9 C 0
s saiBol1.JH378271           1868810 6 +   3513951 CAGCAG
i saiBol1.JH378271          C 0 I 6723
s cebCap1.NW_016107730v1     1908801 6 +   1920343 CAGCAG
i cebCap1.NW_016107730v1    C 0 I 398
s otoGar3.GL873537          22854501 6 +  28711273 CAGCAG
i otoGar3.GL873537          C 0 I 57
s mm10.chr11                22121376 6 - 122082543 CAGCAG
i mm10.chr11                I 12 C 0
s canFam3.chr9              21480143 6 +  61074082 CAGCAG
i canFam3.chr9              I 91 C 0
s dasNov3.JH570468            470980 6 -    852752 CAAGAA
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e calJac3.chr5              46145330 277 - 159171411 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=195799.000000
s hg38.chr17_JH159148v1_alt    26441 31 +     88070 ATGCTCCTGTAGCAGGTGGTCTTGCAGCACA
s panTro5.chr17             16337540 31 +  83181570 ATGCTCCTGTAGCAGGTGGTCTTGCAGCACA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242418 31 +  83442489 ATGCTCCTGTAGCAGGTGGTCTTGCAGCACA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089104 31 +   4267968 ATGCTCCTGTAGCAGGTGGTCTTGCAGCACA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069464 31 -   2193130 ATGGTCCTGTAGCAGGTGGTCTTGCAGCACA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2133021 31 +  10377808 GTGGTCCTGCAGCAGGTGGTCCTGCAGCACG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991568 31 -   8458610 GTGGTCCTGCAGCAGGTGGTCCTGCAGCACG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936193 31 +  75148670 GTGGTCCTGCAGCAGGTGGTCCTGCAGCACG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2234700 31 +   4244037 GTGGTCCTGCAGCAGGTGGTCCTGCAGCACG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205153 31 +   4569836 GTGGTCCTGCAGCAGGTGGTCCTGCAGCACG
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22854564 31 +  28711273 GTGGTCCTGCAGCAGGTGGTCCTGCAGCAGG
i otoGar3.GL873537          I 57 C 0
s mm10.chr11                22121382 29 - 122082543 GGGTACCCACAGCAGCTGGGCTGGCAGCA--
i mm10.chr11                C 0 C 0
s canFam3.chr9              21480149 31 +  61074082 GTGGTCCTGCAGCAGGTGGTCCTGCAGCATG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            470986 31 -    852752 CTGGACCCACAGCAGGTGGGCTGGCAGCAGG
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1908807 398 +   1920343 I
e saiBol1.JH378271           1868816 6723 +   3513951 I
e calJac3.chr5              46145330 277 - 159171411 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=1855642.000000
s hg38.chr17_JH159148v1_alt    26472 309 +     88070 TAGGCTGGCAGCAAGGGG----------------------------------------------AGCAAC---ACTGGGTCATGATGTCAGGGGTGGAGGG-TGGGCTCCTGTTTAGAGGTAAATTTCCCGGAATCTGATG---ACTCCTTCCAATCTGGACCTTCTATACACTAAGCCTCC-AAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGTTGTTTAC-ATTGTTTTCCGTAGT---CAGTTTG-GG-ATTATTGAAGAGGATGTTGTTTCCTAAATATTATAGATCTTCTGAGAGTAAGGGCTTAATCTGTTTCTTAATTGAGAATAACTGTTAGAAACTTTG-----TTTCAGATAAAAGGAA
s panTro5.chr17             16337571 309 +  83181570 TAGGCTGGCAGCAAGGGG----------------------------------------------AGCAAC---ACTGGGTCATGATGTCAGGGGTGGAGGG-TGGGCTCCTGTTTAGAGGTAAATTTCCCGGAATCTGATG---ACTCCTTCCAATCTGGACCTTCTATACACTGAGCCTCC-AAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGTTGTTTAC-ATTGTTTTCCATAGT---CAGTTTG-GG-ATTATTGAAGAGGAAGTTGTTTCCTAAATATTATAGATCTTCTGAGAGTAAGGGTTTAATCTGTTTCTTAATTGAGAATAACTGTTAGAAACTTTG-----TTTCAGATAAAAGGAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242449 309 +  83442489 TAGGCTGGCAGCAAGGGG----------------------------------------------AGCAAC---ACTGGGTCATGATGTCAGGGGTGGAGGG-TGGGCTCCTGTTTAGAGGTAAATTTCCCGGAATCTGATG---ACTCCTTCCAATCTGGACCTTCTATACACTGAGCCTCC-AAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGTTGTTTAC-ATTGTTTTCCATAGT---CAGTTTG-GG-ATTATTGAAGAGGAAGTTGTTTCCTAAATATTATAGATCTTCTGAGAGTAAGGGTTTAATCTGTTTCTTAATTGAGAATAACTGTTAGAAACTTTG-----TTTCAGATAAAAGGAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089135 309 +   4267968 TAGGCTGGCAGCAAGGGG----------------------------------------------AGCAAC---ACTGGGTCATGATGTCAGGGGTGGAGGG-TGGGCTCCTGTTTAGAGGTAAATTTCCCGGAATCTGATG---ACTCCTTCCAATCCGGACCTTCTATACACTGAGCCTCC-AAAGTTTCCAACAATAAGCAGGACTTTTCCTTGTTGTTGTTTAC-ATTGTTTTCCATAGT---CAGTTTG-GG-GTTATTGAAGAGGAAGTTGTTTCCTAAATATTATAGATCTTCTGAGAGTAAGGGTTTAATCTGTTTCTTAATTGAGAATAACTGTTAGAAACTTTG-----TTTCAGATAAAAGGAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069495 305 -   2193130 TAGGCTGGCAGCAAGGGG----------------------------------------------AGCAAC---AGTGGGTCATGGTGTCA-GGGTGGAGGC-TGGGCTCCTGTTTAGAGGTAAATTTCCCAGAATCTGATG---ACTCCTTCCAATCTGGACTTTCTATACACTGAGCCTCC-AAAGTTTCCACCAATCAGCAGGACTTTTCC---TTGTTGTTTAC-ATTGTTTTCCACAGT---CAGTTTG-GG-ATTATCAAAGAGGAAGTTGTTTCCTAAATGTTATAGATCTTCTGAGAGTAAGGGTTTAATCTGTTTCTTAATTGAGAATAAGTGTTAGAAACTTTG-----TTTCAGATAAAAGGAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2133052 309 +  10377808 TAGGCTGACAGCAAGGGG----------------------------------------------AGCAAC---AGTTGGTCATGGTGTCAGGGGTGGAAGG-TGGGCTTCTATTCAGAGGTGAGTTTCCCAGAATGTGATG---ACCCCTTGCAATCTGGACCTTTTATACACCTGGCCTCC-AAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTAC-ATTGTTTTTCATACG---CACTTTG-CG-ATCGTCAAAGGGGAAGTTGTTTCTGAAATCTTATGAATCTGTTGAAAGTAAGTGTTTAATCTGTTTGTTAATTGAGAATTACTCATAAAAACTTCG-----TTTCAGATAAAAGGAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991599 308 -   8458610 TAGGCTGGCAGCAAGGGG----------------------------------------------AGCAAC---AGTTGGTCATGGTGTCAGGGGTGGAGGG-TGGGTTTCTGTTCAGAGGTGAGTTTCCCAGAATGTGATG---ACCCCTTGCAATCTGGACCTTTTATACACCTGGCCTCC-AAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTAC-GTTGTTTTCTATAGT---CAGTCTG-GG-ACTGTCAAAGGGGAAGTTGTTTCCTAAAGATTATGAATCTTTTGAAAGTAAGGGTTTAATATGTCTCTTAATTGTG-TTTACTCATAGAAACTTTG-----TTTCAGATAAAAGGAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936224 308 +  75148670 TAGGCTGGCAGCAAGGGG----------------------------------------------AGCAAC---AGTTGGTCATGGTGTCAGGGGTGGAGGG-TGGGTTTCTGATCAGAGGTGAGTTTCCCAGAATGTGATG---ACCCCTTGCAATTGGGACCTTTTATACACCTGGCCTCC-AAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTAC-ATTGTTTTCTATAGT---CAGTTTG-GG-ACTGTCAAAGGGGAAGTTGTTTCCTAAAGATTATGAATCTTTTTAAAGTAAGGGTTTAATATGTCTCTTAATTGTG-TTTACTCATAGAAACTTTG-----TTTCAGATAAAAGGAA
i chlSab2.chr16             C 0 I 36764
s manLeu1.NW_012106252v1     2234731 309 +   4244037 TAGGCTGGCAGCAAGGGG----------------------------------------------AGCAAC---AGTTGGTCATGGTGTCAGGGGTGGAGGG-TGGGTTTCTATTCAGAGGTGAGTTTCCCAGGATGTGATG---ACCCCTTGCAATCTGGACCTTTTATACACCTGGCCTCC-AAAGTTTCCACCAATCATCAGGACTTTTTCTTGTTGCTGTTTAC-ATTGTTTTTCATACT---CCCTTTG-CG-ATCGTCAAAGGGGAAGTTGTTTCTGAAATCTTATGAATCTGTTGAAAGTAAATGTTTAATCTGTTTGTTAATTGAGAATTACTCATAAAAACTTTG-----TTTCAGATAAAAGGAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205184 310 +   4569836 TAGGCTGGCAGCAAGGGG----------------------------------------------AGCAAC---AGTTGGTCATGGTGTCAGGCGTGAAGGG-TGGGCTTCTGTTCAGAGGTGAATTTCCCAGAATCTGATG---ACCCCTTGCAATCTAGACCTTTTATACACCTGGCCTCC-AAAGTTTCCACCAATCTGCAGGATTTTTCTTTGTTGCTGTTTACAATTGTTTTCCATAGT---CAGTTTG-GC-ATTGTCAAAGAGGAAGTCATTTCCTAAATGTTATGAATCTTTGGAAAGTAAGGGTTTAATCTGTTTCTTAATTGTGAATTACTCATAGAAACTTTG-----TTTCAGATAAAAGGAA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1875539 309 +   3513951 TAGGCTGGCAGCAAGGGG----------------------------------------------AGCAGC---AGTGGGTCATGGTGTCAGGGGTGGATGG-TGGGCTCCTGTTCAGAGGTGAGTTTCCCAGAATCTGATG---ACTCCTTCCAATCTGGGCCTTTTATACATCTGGCCTCC-AACGTTTCCACCAATCAGCAGGACTTCTCATTGTTGCTGTTTAC-ATTGTTTTCTATAGT---CAGTTTG-GG-ATTATCAAAGAGGAAGTCATTTACTAAATGCTATGAATCTTTTGAAAGTAAGAGTTTAATCTGTTTCTTACTTGTGAATTACTCATAGAAATGTTG-----TTTTAAGTAAAAGGAA
i saiBol1.JH378271          I 6723 C 0
s otoGar3.GL873537          22854595 308 +  28711273 TGGACTGGCAACAAGGGG----------------------------------------------AGCAAC---AGTGGGTCATGGTGTCT-GTGTGGAGGG-TGGGTTTCTGTTCAGAGGTGAGTTTCCCAGAATCTGCTG---ATGTCTTCCAATGTGGACCTTTTATACACGGGGCCTCC-AAAGTTTGGACCAATGGACAGAATTTTTCCTTATTATTGTTGAC-ACTGTTTTCCATAATTACCAGCT---GA-ATTAAGAAGGAGGAAGTTGTTTCCTAAGGGTTAAAACTCTTTCAATAGTAAGTGTTTAATCTGTTTCTTAATTGAGAATCACTCATTGAAACTTC------TTTCAGGTAAAAGGAA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22121411 341 - 122082543 -GGACTGGCAGCAGCTGGTCACCCAGCTTGGTCTCCAGTAGGTGGCTCTGCAACAGCTAGGAACAGTAGG---AATGGGTCATGGTATTAGATATGGAGGGTTGGGCTTCTCTTCAATGGTCAGTTTTCCAGAATACAATG---ACATTTTTCTATGTAGGCCTTTTGTATACCAGATCCTC-ATAGTATAGACCAACCAGAAGGTCTTTCC-------TTGTTTCT-ACAATATTTCACATC---CAGTTTG-AT-GTTGTCAAAGGAAGCATGGCTCTCCCAATGTTATGAAGTTTTTCA-AGCAAGGA-----------TCTTAACTGAAAACAACTCATTAAAAAGATGAACCTTTGCAGGCAGAAGGAA
i mm10.chr11                C 0 C 0
s canFam3.chr9              21480180 312 +  61074082 TAGGCTGGCAGTAAGGGG----------------------------------------------AGCAGAATGAACCAGTCATGCTGTCAGTGGTGGAAGG-TGAGCTTCTGTTTTGCGTTGTGGTTTTTAGATTCTGTTACCTATTCCTTCCATTCTGGGGCTTTTATACACTGGACCTCCTGACATTTGGACCAATGGGCACGACGT-TCCTTGTTGTTGTTTAA-ATAATTTTCAATAAT---CACTGAG-GGAAGTGTAAAAGAGGAAGTTG-TTCCGAAATGTTATGAATCCTTAGGAAATAATTGCTT-ATTTGCTTCTTAATTGAGAATAACTCATAGAAACAT-------TCTCAGAAGGAAGGAA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            471017 298 -    852752 TGGGCTGGCAGCAGGGAG----------------------------------------------AGCAGC---AGGAAGTCATGGTGTCA-CGGTGGTGGG---GGCTCCTGTTCAGAGGTG---TTTCCAGAATCTGATG---GCTCCTTTAATTCTGCATCTTTTATATACTGGGCC-CC-AATATTTGGACCAATAGGCAAGTCTTTTCCTTGTTGTTGTTGAG-GTTGTTTTCCACAGA---TACAGAGCAA-ATTGTCAAGAAGGAAGTT--TTTCCTGATGTTTTCCTTCTGTTGAAAATAAGTGTTTAATCGTTTTCTTAATTAAGAGT-GTTCATAGAATCTT-------TTTCAGACATAGGGAA
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1908807 398 +   1920343 I
e calJac3.chr5              46145330 277 - 159171411 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917   3 -  77216781 I

a score=7085.000000
s hg38.chr17_JH159148v1_alt    26781 1 +     88070 G
s panTro5.chr17             16337880 1 +  83181570 G
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242758 1 +  83442489 G
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089444 1 +   4267968 G
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069800 1 -   2193130 G
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2133361 1 +  10377808 G
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991907 1 -   8458610 G
i cerAty1.NW_012006043v1    C 0 I 42010
s chlSab2.chr16             64973296 1 +  75148670 A
i chlSab2.chr16             I 36764 C 0
s manLeu1.NW_012106252v1     2235040 1 +   4244037 A
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205494 1 +   4569836 G
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1875848 1 +   3513951 G
i saiBol1.JH378271          C 0 C 0
s otoGar3.GL873537          22854903 1 +  28711273 G
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22121752 1 - 122082543 G
i mm10.chr11                C 0 C 0
s canFam3.chr9              21480492 1 +  61074082 G
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            471315 1 -    852752 G
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1908807 398 +   1920343 I
e calJac3.chr5              46145330 277 - 159171411 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=385863.000000
s hg38.chr17_JH159148v1_alt    26782 60 +     88070 GTGGTCACATCATTGACATCCTTCCTGCTCTGGTCATCATGTGGTCATGTG--ATAGTTCCT
s panTro5.chr17             16337881 60 +  83181570 GTGGTCACATCATTGACATCCTTCCTGCTCTGGTCATCATGTGGTCATGTG--ATAGTTCCT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242759 60 +  83442489 GTGGTCACATCATTGACATCCTTCCTGCTCTGGTCATCATGTGGTCATGTG--ATAGTTCCT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089445 60 +   4267968 GTGGTCACATCATTGACATCCTTCCTGCTCTGGTCATCATGTGGTCATGTG--ATAGTTCCT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069801 60 -   2193130 GTGGTCACATCGTTGACATCCTTCCTGCTCTGGTCATCATGTGATCATGTG--ATAGTTCCC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2133362 60 +  10377808 TCAGTCTCATTATCAGCATCATTCCTGCTCTGACCATCATCCCGTCATGTG--ATAGTTCCT
i macNem1.NW_012014910v1    C 0 I 59
s cerAty1.NW_012006043v1     2033918 60 -   8458610 CTCCTCTCATCATCAGCGTCATTCCTGCTCTGACAATCATCTGGTCATGTG--ATAGGTCCT
i cerAty1.NW_012006043v1    I 42010 T 45298
s chlSab2.chr16             64973297 60 +  75148670 TCAGTCTCATTATCAGCATCATTCCTGCTCTGACCATCATCTGGTCATGTG--ATAGTTCCT
i chlSab2.chr16             C 0 T 40055
s manLeu1.NW_012106252v1     2235041 60 +   4244037 TCAGTCTCATTATCAGCATCATTCCTGCTCTGACCATCATCCGGTCATGTG--ATAGTTCCT
i manLeu1.NW_012106252v1    C 0 I 56
s colAng1.NW_012122154v1     2205495 60 +   4569836 GCAGTCTCATCATCAGCTTGGTTCCTGCTCTGACCATCATCTGGTCGTGTG--ATAGTTCCT
i colAng1.NW_012122154v1    C 0 T 9501
s saiBol1.JH378271           1875849 60 +   3513951 GCAGTTTCATCAACAGCCTGCTTCCTGCTCTGACCATCATCTTGTCATGTG--ATAGTTCCT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1909205 60 +   1920343 CCCGTGCCATCATCAGCATGGTTCCTGCTCTGACCATCTTCTGGTCATGTG--ATAGTTCCT
i cebCap1.NW_016107730v1    I 398 T 3522
s otoGar3.GL873537          22854904 60 +  28711273 GTGCTCACATCATCAGCATCGTTCCTGCTCTGGTCACCATCTGCTCATGTG--CTAGTTCCT
i otoGar3.GL873537          C 0 I 13
s mm10.chr11                22121753 59 - 122082543 CTGAACATGTCATCAGCAGTA-TCTTGCTTTGGTCATCTCTTGATGGTGCG--ATCACTCTT
i mm10.chr11                C 0 C 0
s canFam3.chr9              21480493 62 +  61074082 GTGGTCACATCAGCAGCCTTGTTCTTGCTTCAGGGACCATGGGATCATGTGCTCTAGTTTCT
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            471316 58 -    852752 GAGGTCACCTCCTCAGCGTCATTCCTGTTCTG-TCATCATCTG-TCACGTG--ATAGCTCCC
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e calJac3.chr5              46145330 277 - 159171411 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=53147.000000
s hg38.chr17_JH159148v1_alt    26842 47 +     88070 ACTGGCCTTGGAAG-GTC------AGGGCAGGTGTCTCTCCCCAG-CT-TGTTCTT
s panTro5.chr17             16337941 47 +  83181570 ACTGGCCTTGGAAG-GTC------AGGGCAGGTGTCTCTCCCCAG-CT-TGTTCTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242819 47 +  83442489 ACTGGCCTTGGAAG-GTC------AGGGCAGGTGTCTCTCCCCAG-CT-TGTTCTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089505 47 +   4267968 ACTGGCCTTGGAAG-GTC------AGGGCAGGTGTCTCTCCCCAG-CT-TGTTCTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069861 47 -   2193130 ACTGGCCTTGGAAG-GTC------AGGGCAGGTGTCTCTCCCCAG-CT-TGTTCTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s saiBol1.JH378271           1875909 46 +   3513951 GGTGACCAGGGAGG-CTC------AGGA-AGTTCTCTCTGTCCAG-CC-TCATCCT
i saiBol1.JH378271          C 0 I 16
s otoGar3.GL873537          22854977 53 +  28711273 TGTGGCTGTGTGCA-GTCCATTAGAAAAAGGATGATAGTAACAAA-AT-AATAAAC
i otoGar3.GL873537          I 13 I 1
s mm10.chr11                22121812 47 - 122082543 -TAGAACTAGGAGA-CTC------AGGGTGGTTGCCCCTTTAAAGTTT-TATTCCT
i mm10.chr11                C 0 I 16
s canFam3.chr9              21480555 47 +  61074082 GCTGGCCTGAGGAGTGTC------AG--CAGTGGTCCTTCCCCAG-CTCTGGTCTC
i canFam3.chr9              C 0 I 9
s dasNov3.JH570468            471374 49 -    852752 GCTGGCCAGGGGAGGGTC------CTAACAGTCGTTGCTCCCCAG-CTTTGTTCCT
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1909265 3522 +   1920343 T
e manLeu1.NW_012106252v1     2235101 56 +   4244037 I
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133422 59 +  10377808 I
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=188371.000000
s hg38.chr17_JH159148v1_alt    26889 65 +     88070 ----------------TG-----GGGAGTGTCTGTGGGG----AGGAG------------------------------CATGATGCTGATAGGTTCACAGTGATGAACTGAATCCATGCC
s panTro5.chr17             16337988 65 +  83181570 ----------------TG-----GGGAGTGTCTGTGGGG----AGGAG------------------------------CATGATGCTGATAGGTTCACAGTGATGAACTGAATCCATGCC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242866 65 +  83442489 ----------------TG-----GGGAGTGTCTGTGGGG----AGGAG------------------------------CATGATGCTGATAGGTTCACAGTGACGAACTGAATCCATGCC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089552 65 +   4267968 ----------------TG-----GGGAGTGTCTGTGGGG----AGCAG------------------------------CATGATGCTGATAGGTTCACAGTGATGAATTGAATCCAAGCC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069908 65 -   2193130 ----------------CG-----GGGAGTGTCTGTGGGG----AGGAA------------------------------CATGATGCTGATAGGTTCACAGTGATGAACTGAACCCATGCC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2133481 65 +  10377808 ----------------TG-----GGAAATGTCTGTGGGC----AGTCG------------------------------CGTGATGCTGATATATTCACAGTGATGCATTGAATCCATGCC
i macNem1.NW_012014910v1    I 59 T 30171
s manLeu1.NW_012106252v1     2235157 65 +   4244037 ----------------TG-----GGAAATGTCTGTGGGC----AGTCG------------------------------CGTGATGCTGATATATTCACAGTGATGCATTGAATCCATGCC
i manLeu1.NW_012106252v1    I 56 T 62204
s saiBol1.JH378271           1875971 95 +   3513951 ----------------TG-----CAAAGCATCTGTGAGG----AGATACTATTTCGTGAGGGATAATTTTCACAAAGCCATGATGCTGGTATATTCACAGTGATGAATTGAATCCATGCT
i saiBol1.JH378271          I 16 I 1
s otoGar3.GL873537          22855031 65 +  28711273 ----------------TG-----GGATGCATTTGTGGGA----AGGAG------------------------------CTTGGTGCTAATATGTTCACAGTGATGAATTGAATGCATGCC
i otoGar3.GL873537          I 1 C 0
s mm10.chr11                22121875 54 - 122082543 ----------------TA-----GGAAGAGACTCAGGAG----AGAGG------------------------------CTGGGCGGTGAT-------CAGAGATGACCTGAATGAC----
i mm10.chr11                I 16 C 0
s canFam3.chr9              21480611 74 +  61074082 ----------------TGTAGATGGAAATGTCCCTGGGGGAGTGGGGA------------------------------CATGAGGTCCCTCTGTTCACAGGGAGCACCGGAATCCATGCC
i canFam3.chr9              I 9 C 0
s dasNov3.JH570468            471423 81 -    852752 TTGGCTGTACTTAGATTG-----GCAAGTGCACCTGGGG----GCGTG------------------------------CATGATGCTGATATGTTCTCAGGGACAAATTGGATCCCCGCC
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1909265 3522 +   1920343 T
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=117733.000000
s hg38.chr17_JH159148v1_alt    26954 73 +     88070 TGCGT-CAAGGCTATTCACCTA-CAA-GGCCTGATTCAAGA----AT--AACAGGCACCT------ACCTGTCTTTGTGCAACCTACT
s panTro5.chr17             16338053 73 +  83181570 TGCGT-CAAGGCTATTCACCTA-CAA-GGCCTGATTCAAGA----AT--AACAGGCACCT------ACCTGTCTTTGTGCAACCTACT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16242931 73 +  83442489 TGCGT-CAAGGCTATTCACCTA-CAA-GGCCTGATTCAAGA----AT--AACAGGCACCT------ACCTGTCTTTGTGCAACCTACT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089617 73 +   4267968 TGGGT-CAAAGCTATTCACCTA-CAA-GGCCTGATTCAAGA----AT--AACAGGCACCT------ACCTGTCTTTGTGCAACCTACT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2069973 73 -   2193130 TGGGT-CAAGGCTGTTCACCTA-CAG-GGCTTGATTCAAGA----AT--AACAGGCACCC------ACCTGTCTTTGTGCAACCTACT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s saiBol1.JH378271           1876067 70 +   3513951 GGGAC-CAAGACTGTTTACCCACCAA-AGTCTGATTCAATA----CT--AACAGG----T------ATCTCTCTCTGTACAGCTTACT
i saiBol1.JH378271          I 1 T 21535
s otoGar3.GL873537          22855096 67 +  28711273 TGGGTCCAAGTCTCTTCACCCA-CAACAGCCCAATTCAAGA----CT--AACAGGAA--------------TCTCTGTACAACCTACT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22121929 71 - 122082543 TAGCT-CA---TTGTTCACTCA-CAGAAGCCTGACTC------------CATAGGCTACTCTGAGCATTTGTCTCTGTGCCAGATCCT
i mm10.chr11                C 0 I 4
s canFam3.chr9              21480685 75 +  61074082 TGAGCCCAAGTCAGTCTCCCCA-CAA-AGCCTGATGGGAGACACCCT--GAT-GGCATCT------GCT--TCTTGGAGCACCCTACC
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            471504 77 -    852752 TGGGTCCAAGACTGTTCACCCA-CAAAAGCCTGATTCAAGA----CTGCAACAAGAATTT------ATCTTTCTCTTGGCAACTTACT
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1909265 3522 +   1920343 T
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=3767.000000
s hg38.chr17_JH159148v1_alt    27027 2 +     88070 CC
s panTro5.chr17             16338126 2 +  83181570 CC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16243004 2 +  83442489 CC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089690 2 +   4267968 CC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2070046 2 -   2193130 CT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22855163 2 +  28711273 CT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22122004 2 - 122082543 TT
i mm10.chr11                I 4 C 0
s canFam3.chr9              21480760 2 +  61074082 CC
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            471581 2 -    852752 CC
i dasNov3.JH570468          C 0 I 19088
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1909265 3522 +   1920343 T
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e saiBol1.JH378271           1876137 21535 +   3513951 T
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=7496.000000
s hg38.chr17_JH159148v1_alt    27029 6 +     88070 GGATGT
s panTro5.chr17             16338128 6 +  83181570 GGATGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16243006 6 +  83442489 GGATGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089692 6 +   4267968 GGATGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2070048 6 -   2193130 GGATGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22855165 6 +  28711273 TCTTGT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22122006 6 - 122082543 GGATGT
i mm10.chr11                C 0 I 4010
s canFam3.chr9              21480762 6 +  61074082 ATCTGC
i canFam3.chr9              C 0 C 0
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1909265 3522 +   1920343 T
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e saiBol1.JH378271           1876137 21535 +   3513951 T
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=5006.000000
s hg38.chr17_JH159148v1_alt    27035 4 +     88070 GTat
s panTro5.chr17             16338134 4 +  83181570 GTat
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16243012 4 +  83442489 GTat
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089698 4 +   4267968 GTat
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2070054 4 -   2193130 GTCt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22855171 4 +  28711273 GTCT
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              21480768 4 +  61074082 ATAT
i canFam3.chr9              C 0 I 23414
e mm10.chr11                22122012 4010 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1909265 3522 +   1920343 T
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e saiBol1.JH378271           1876137 21535 +   3513951 T
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=11025.000000
s hg38.chr17_JH159148v1_alt    27039 12 +     88070 gtggtgtttgtc
s panTro5.chr17             16338138 12 +  83181570 gtggtgtttgtc
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16243016 12 +  83442489 gtggtgtttgtc
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089702 12 +   4267968 gtggtgtttgtc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2070058 12 -   2193130 gtgatgtttgtc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22855175 12 +  28711273 CCTGGTTCTGTC
i otoGar3.GL873537          C 0 I 45599
e mm10.chr11                22122012 4010 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1909265 3522 +   1920343 T
e canFam3.chr9              21480772 23414 +  61074082 I
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e saiBol1.JH378271           1876137 21535 +   3513951 T
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=1094380.000000
s hg38.chr17_JH159148v1_alt    27051 1055 +     88070 tttctgtgcctggcttat----------------------------tttacttaacata-----------------atgatct-------tcaactccatccatg--------------------------------------------------------------------ttgttg-------------------caaatg------------acttgatctcattct--------------tttttatggctgaataatacttcatttggtgtatgtaccacattttctttatccactcatctgttggtggacacttacattgctgctaaatcttagctattgtaaacagtgttgcaacaaatataggagtgcagatgtctctttgatataccaatttctcttcttctgggt-atataccgaggagtgtgattgctggataatatggtagctcagtttttagttttttgaggaacctccaaagtgtcttccatagcgcttgtact----aatttacattcccaccaagaatgcacgagcgttctcttttctccacatctgcatcagcatttgtcattgcctgccttttggatataagccattttaactggggtgagatgatctctcattgtagttttgatttgcatttctctgatgatcaatgatggtgaacaccttttcatatgctt-------atttatatgtcttcttttgagaaatgtcaattcaaatcttttgcccattttgtgatcagattattagattttttttcctatagaattatttgacctccttat--attctggttgttaattcattaacaatgcataggtattttgcaaatattttctcccattctgtgggttgtctctttgtt------attgtttcctttgctgtgcagaagctttttaatttgatgtgatcccatttgtttatttttgctttggttgcctgtgcttgcggggtattgctcaagaaatttttgcccagaccaatgtcctggaga-ttttccccaatattttcttgtagtagtttcatagttcgaggtcttagattcaagtcttcgatctaatttgatttgatttttgtatgtggtgagaaagagggatctagtttcattcctctgcatagagatatctagttttcccagcatggtttattgaagagaatgcctttttcccagtgtatgctcttggcacctttgttgaaaatgaggtgactgtaggtgtgtgg
s panTro5.chr17             16338150 1055 +  83181570 tttctgtgcctggcttat----------------------------tttacttaacata-----------------atgatct-------tcaactccatccatg--------------------------------------------------------------------ttgttg-------------------caaatg------------acttgatctcattct--------------tttttatggctgaataatacttcatttggtgtatgtaccacattttctttatccattcatctgttggtggacacttacattgctgctaaatcttagctattgtaaacagtgttgcaacaaatatacgagtgcagatgtctctttgatataccaatttctcttcttctgggt-atataccgaggagtgtgattgctggataatatggtagctcagtttttagttttttgaggaacctccaaagtgtcttccatagcgcttgtact----aatttacattcccaccaagaatgcacaagcgttctcttttctccacatctgcatcagcatttgtcattgcctgccttttggatataagccattttaactggggtgagatgatctctcattgtagttttgatttgcatttctctgatgatcaatgatggtgaacaccttttcatatgctt-------atttatatgtcttcttttgagaaatgtcaattcaaatcttttgcccattttgtgatcagattatttgattttttttcctatggaattatttgacctccttat--attctggttgttaattcattaacaatgcataggtattttgcaaatattttctcccattctgtgggttgtctctttgtt------attgtttcctttgctgtgcagaagctttttaatttgatgtgatcccatttgtttatttttgctttggttgcctgtgcttgcggggtattgctcaagaaatttttgcccagaccaatgtcctggaga-ttttccccaatattttcttgtagtagtttcatagttcgaggtcttagattcaagtcttcgatctaatttgatttgatttttgtatgtggtgagaaagagggatctagtttcattcctctgcatagagatatctagttttcccagcatggtttattgaagagaatgtctttttcccagtgtatgctcttggcacctttgttgaaaatgaggtgactgtaggtgtgtgg
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16243028 1055 +  83442489 tttctgtgcctggcttat----------------------------tttacttaacata-----------------atgatct-------tcaactccatccatg--------------------------------------------------------------------ttgttg-------------------caaatg------------acttgatctcattct--------------tttttatggctgaataatacttcatttggtgtatgtaccacattttctttatccattcatctgttggtggacacttacattgctgctaaatcttagctattgtaaacagtgttgcaacaaatatacgagtgcagatgtctctttgatataccaatttctcttcttctgggt-atataccgaggagtgtgattgctggataatatggtagctcagtttttagttttttgaggaacctccaaagtgtcttccatagcgcttgtact----aatttacattcccaccaagaatgcacaagcgttctcttttctccacatctgcatcagcatttgtcattgcctgccttttggatataagccattttaactggggtgagatgatctctcattgtagttttgatttgcatttctctgatgatcaatgatggtgaacaccttttcatatgctt-------atttatatgtcttcttttgagaaatgtcaattcaaatcttttgcccattttgtgatcagattatttgattttttttcctatggaattatttgacctccttat--attctggttgttaattcattaacaatgcataggtattttgcaaatattttctcccattctgtgggttgtctctttgtt------attgtttcctttgctgtgcagaagctttttaatttgatgtgatcccatttgtttatttttgctttggttgcctgtgcttgcggggtattgctcaagaaatttttgcccagaccaatgtcctggaga-ttttccccaatattttcttgtagtagtttcatagttcgaggtcttagattcaagtcttcgatctaatttgatttgatttttgtatgtggtgagaaagagggatctagtttcattcctctgcatagagatatctagtcttcccagcatggtttattgaagagaatgtctttttcccagtgtatgctcttggcacctttgttgaaaatgaggtgactgtaggtgtgtgg
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4089714 1055 +   4267968 tttctgtgcctggcttat----------------------------tttacttaacata-----------------atgatct-------tcaactccatccatg--------------------------------------------------------------------ttgttg-------------------caaatg------------acttgatctcattct--------------tttttatggctgaataatacttcatttggtgtatgtaccacattttctttatccatccatctgttggtggacacttacattgctgctaaatcttagctattgtaaacagtgttgcaacaaatataggagtgcagatgtctctttgatataccaatttctcttcttctgggt-atataccgagcagtgtgattgctggataatatggtagctcagtttttagttttttgaggaacctccaaagtgttttccatagcgcttgtact----aatttacattcccaccaagaatgcatgagcgttctcttttctccacatctgcatcagcatttgtcattgcctgccttttggatataagccattttaactggggtgagatgatctctcatcgtagttttgatttgcatttctctgatgatcaatgatggtgaacaccttttcatatgctt-------atttatatgtcttcttttgagaaatgtcaattcaaatcttttgcccattttgtgatcagattattagattttttttcctatagaattatttgacctccttat--attctggttgttaattcattaacaatgcataggtattttgcaaatattttctgccattctgtgggttgtctctttgtt------attatttcgtttgctgtgcagaagctttttaatttgatgtgatcccatttgtttatttttgctttggttgcctgtgcttgcggggtattgctcaagaaatttttgcccagaccaatgtcctggaga-ttttccccaatattttcttgtagtagtttcatagttcgaggtcttagattcaagtcttcgatctaatttgatttgatttttgtatgtggtgagaaagagggatctagtttcattcctctgcatagagatatctagttttcccagcatggtttattgaagagaatgtctttttcccagtgtatgctcttggcacctttgttgaaaatgaggtgactgtaggtgtgtgg
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2070070 1053 -   2193130 tttctgtgcctggcttat----------------------------tttacttaacata-----------------atgatct-------tcagctccatccatg--------------------------------------------------------------------ttgttg-------------------cgaatg------------acttgatctcattct--------------tttttatggctgaataatacttcatttggtgtatgtaccatattttctttatccattcatctgttggtggacacttatattgctgctaaatcttagctattgtaaacagtgatgcaacaaatataggagtgcagatgtctctttgatatacggatttcccttcttctgggt-atatactgagcagtgtgattgccggataatatggtagctcagtttttaattttttgaggaacctccaaagtgttttccatagtgcttgtact----aatttacattcccaccaagaatgcacgagccttctcttttctccacatctgcatcagcatttgtcattgcctgccttttggatataagccattttaactggggtgagatgatctctcattgtagttttgatttgcatttctctcatgatcaatgatagtgaacaccttttcatatgctt-------atttatatgtcttcttttgagaaatgtcaattcaaatcttttgcccattttgtgatcagattattatattttttttcctatagaattatttgacctccttat--attctggttgttaattcattaacaatgcgtaggtattttgcaaatattttctcccattctgtgggttatctctttgtt------attgtttcctttgttgtgcagaaactttttaatttgatggcatcccatttgtttattttt-ctttggttgcctgtgcttgtggggtattactcaagaaattttt-cccagaccaatgtcctggaga-ttttccccaatattttcttgtagtagtttcatagttcgaggtcttagattcaagtcttcaatctaatttgatttgatttttgtatgtggtgagaaagagggatcaagtttcattcctctgcatagagatatctagttttcgcagcatggtttattgaagagaatgtctttttcccaatgtaagctcttggcacctttgttgaaaatgtggtgactgtaggtgtgtgg
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22900786 1216 +  28711273 TGTATTTGGCTGGCTTACAAAGATGAGAATGTGTGAGTTTCTGTAATACACTTACCATAGATCCAGACAAATCCAGATGAGCTGGTGACACTAGCTCTAACCCTGGGTAGCAACAAAATGAGTTACTTTGAACACTGAATGAGCAGCATAGCCACAGCCATCACTAGGTCTTATTATTGGGGTAGGGCTTATATTTAACAAATGCATAGAAATCCTGCTAGGGCTTATTTTGGGGGTAGGTCTTATTTTCAGGGAAACATGgtattctatagggttcatatgccacatttg-tgtatctactcatgaattagtgggcacttgggatgagtctacatctttgcaattaccagttgtgctgcaataaacatttaagtgctagtgtctttttgataaaattatttcttttcagttgggtcaggtacctagtagtggggttactggatcaaatgttaggtcaacttttagtcctttgaggaaaacccacactattttccatagagcttatatttatgaatttgcagtcccagcaagagtttataagtgtttctttctgtctgtatctactccaatatctattgtt-ttagacgttttaataagaaccttcctagctaggggatggtgatgtctcattgtggttttaatttgcctttccctgatgattagtgatattgagcattttttcatacatttcttgggcatttgtctatattcttttgaaaagcttctgttcatgtctttt----------taatggggttg------tttctttcttgatgatttgcctgagtgctttgtaaattctggatgttagctctttatcag-gtgtag--attttgtgaatgttcttttccattctgcagtttatctgtttgctctgctgattgtttccttttatgtgcagaagc-ttttaattcaattgagtcctatttatttaattttgctgttgctgtaattgcctttttggtcttagtgataaattctttgcctacactaacgtgtaaaagaggtgttcttaacattttcttctagtattcttatggtttcaggtcttacttttaagtcttttattcatctagaattaatttttgtgagtgctaagtgatatggatgctttttccttcttctgcaggttgctatccaattttcccagcaccatttgttgaatacatcttctttcccccagcgtata---ttgtctgttttgtcaaagatcagcttgctctatttggatgg
i otoGar3.GL873537          I 45599 T 34606
e mm10.chr11                22122012 4010 - 122082543 I
e aotNan1.NW_018502359v1     7019397  281 -   7032639 I
e cebCap1.NW_016107730v1     1909265 3522 +   1920343 T
e canFam3.chr9              21480772 23414 +  61074082 I
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e saiBol1.JH378271           1876137 21535 +   3513951 T
e calJac3.chr5              46145330  277 - 159171411 I
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917    3 -  77216781 I

a score=2386.000000
s hg38.chr17_JH159148v1_alt    28106 3 +     88070 cga
s panTro5.chr17             16339205 3 +  83181570 CGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16244083 3 +  83442489 cga
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4090769 3 +   4267968 CGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2071123 3 -   2193130 tga
i nomLeu3.chrUn_GL397460_1  C 0 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1909265 3522 +   1920343 T
e canFam3.chr9              21480772 23414 +  61074082 I
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e saiBol1.JH378271           1876137 21535 +   3513951 T
e calJac3.chr5              46145330 277 - 159171411 I
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=1365.000000
s hg38.chr17_JH159148v1_alt    28109 1 +     88070 a
s panTro5.chr17             16339208 1 +  83181570 A
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16244086 1 +  83442489 a
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4090772 1 +   4267968 A
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2071126 1 -   2193130 a
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s calJac3.chr5              46145607 1 - 159171411 A
i calJac3.chr5              I 277 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1909265 3522 +   1920343 T
e canFam3.chr9              21480772 23414 +  61074082 I
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e saiBol1.JH378271           1876137 21535 +   3513951 T
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=6393.000000
s hg38.chr17_JH159148v1_alt    28110 5 +     88070 cttta
s panTro5.chr17             16339209 5 +  83181570 CTTTA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16244087 5 +  83442489 cttta
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4090773 5 +   4267968 CTTTA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2071127 5 -   2193130 cttta
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s calJac3.chr5              46145608 5 - 159171411 CTATG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1854602 5 +   3513951 CTATG
i saiBol1.JH378271          T 21535 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1909265 3522 +   1920343 T
e canFam3.chr9              21480772 23414 +  61074082 I
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e macFas5.chr16             28116810 69945 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=5783.000000
s hg38.chr17_JH159148v1_alt    28115 4 +     88070 cttg
s panTro5.chr17             16339214 4 +  83181570 cttg
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16244092 4 +  83442489 cttg
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4090778 4 +   4267968 CGTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2071132 4 -   2193130 cttt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28046865 4 -  80997621 cttt
i macFas5.chr16             T 69945 C 0
s calJac3.chr5              46145613 4 - 159171411 cttt
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1854607 4 +   3513951 cttt
i saiBol1.JH378271          C 0 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e aotNan1.NW_018502359v1     7019397 281 -   7032639 I
e cebCap1.NW_016107730v1     1909265 3522 +   1920343 T
e canFam3.chr9              21480772 23414 +  61074082 I
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=704650.000000
s hg38.chr17_JH159148v1_alt    28119 198 +     88070 tcatgcagacaccagttatattgaatcagaggcccattttattccaatgtgaccttaccttaactagttacattctcaatgaccctatttGGTGATGAATTTCTGGGGAAACAAGTCAATCCAAATATTGAAGTATCTCAGAGTGTGTCCATGGCTGATGATAACTGCAAATGAGTAACAGGAATCACAGTGGACAAT
s panTro5.chr17             16339218 198 +  83181570 tcatgcagacaccagtcatattgaatcagaggcccattttattccaatgtgaccttaccttaactagttacattctcaatgaccctatttGGTGATGAATTTCTGGGGAAACAAGTCAATCCAAATATTGAAGTATCTCAGAGTGTGTCCATGGCCGATGATAACTGCAAATGAGTAACAGGAATCACAGTGGACAAT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16244096 198 +  83442489 tcatgcagacaccagtcatattgaatcagaggcccattttattccaatgtgaccttaccttaactagttacattctcaatgaccctatttGGTGATGAATTTCTGGGGAAACAAGTCAATCCAAATATTGAAGTATCTCAGAGTGTGTCCATGGCCGATGATAACTGCAAATGAGTAACAGGAATCACAGTGGACAAT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4090782 198 +   4267968 TCATGCAgacaccagtcatgttgaatcagaggcccattttattccagtgtgaccttaccttaactagttacattctcaatgaccctatttGGTGATGAATTTCTGGGGAAACAAGTCAATCCAAATATTGAAGTATCTCGGATTGTGTCCATGGCCGATGATAACTGCAAATGAGTAACAGGAATCACAGTGGACAAT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2071136 198 -   2193130 tcatgcagacaccagtcacattgaatcagaggcccagtttattccaatgtgactttaccttaactagttacattctcaatgaccctatttGGAGATGAATTTCTGGGGAAACAAATCAATCCAAATATTGAAGTATCTCAGAGTGTGTCCATGGCCGATGATAACCACAAATGAGTAACAGGCATCACAGTGGACAAT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28046869 189 -  80997621 tcatacagacaccagtcatattgaataagaggacccgtttattccaatgtgacctta-cttaaccagttacattctcaatgaccttatttGGCTATGAATTTCTGGGGAAGCAAATCAATCCAACTATTGGAGTATCTCAGAGCGC--------CCAGTGATAACCACAAATGAGTAACAGCAATCACAGTGGACAAT
i macFas5.chr16             C 0 C 0
s calJac3.chr5              46145617 196 - 159171411 tcatacagaaaacggtcatattgaatcaga-gcccggtttattccagtgtgacctta-cttaactagttacattctcagtgaccctatttGGTGATGAATTTCTGGGGAAACAAATCAATCCAAATATTGGAGTATCTCAGAGTGTGTCCATACCCAGTGATAACCCCAAATGAGTAACAGCAACCACAGTGGACAAT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1854611 197 +   3513951 tcatatggacaacagtcatattgaatcagaggccccgtttattccagtgtgacctta-cttaactagttacattctcagtgaccctatttGGTGACAAATTTCTGGGGAAACGAATCAATCCAAATATTGGAGTATCTCAGAGTGTGTCCATACCCAGTGGCAGCCACAAATGAGTAACAGCAACCACAGTGGACAGT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1905743 197 +   1920343 tcatacagacaacagttatattgaatcagaggcccagtttattccagtgtgacctta-cttaactagttacattctcaatgaccctatttGGTGATGAATTTCTGGGGAAACAAATCAATCCAAATATTGGAGTATCTCAGAGTGTGTCCATGCCCAGTGATAACCACAAATGAGTAACAGCAACCACAGTGGACAAT
i cebCap1.NW_016107730v1    T 3522 T 367
s aotNan1.NW_018502359v1     7019678 197 -   7032639 tcatacagacaccagtcatattgaatcagaggcccagtttattccagtgtgacctta-cttagctagttacattctcaaccaccctatttGGTGATGAATTTCTGGGGAAACAAATCAATCCAAATATTGGAGTATCTCAGAGTGCGTCCATACCCAGTGATAGTCACAAATGAGTAACAGCAGCCACAGTGGACAAT
i aotNan1.NW_018502359v1    I 281 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e canFam3.chr9              21480772 23414 +  61074082 I
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e rheMac8.chr16             30133917   3 -  77216781 I

a score=59516.000000
s hg38.chr17_JH159148v1_alt    28317 24 +     88070 AACACAGTAACTAGAGGGTcagac
s panTro5.chr17             16339416 24 +  83181570 AACACAGTAACTAGAGGGTCAGAC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16244294 24 +  83442489 AACACAGTAactagagggtcagac
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4090980 24 +   4267968 AGCACAGTAACTAGAGGGTcagac
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2071334 24 -   2193130 AGCACAGTAactagagggtcagac
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28047058 24 -  80997621 GGTATAGTAACCAGCAGCTCAGAC
i macFas5.chr16             C 0 C 0
s calJac3.chr5              46145813 24 - 159171411 GGTATAGTAACCAGAGGCTCAGAC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1854808 24 +   3513951 GGTATAGTCGCCAGAGGCTCGGAC
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7019875 24 -   7032639 GGCATAGTAACCAGAGGCTCAGAC
i aotNan1.NW_018502359v1    C 0 T 396
e mm10.chr11                22122012 4010 - 122082543 I
e cebCap1.NW_016107730v1     1905940 367 +   1920343 T
e canFam3.chr9              21480772 23414 +  61074082 I
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=5571.000000
s hg38.chr17_JH159148v1_alt    28341 3 +     88070 cct
s panTro5.chr17             16339440 3 +  83181570 CCT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16244318 3 +  83442489 cct
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4091004 3 +   4267968 cct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2071358 3 -   2193130 cct
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28047082 3 -  80997621 CCT
i macFas5.chr16             C 0 C 0
s calJac3.chr5              46145837 3 - 159171411 ACT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1854832 3 +   3513951 ACT
i saiBol1.JH378271          C 0 T 415
e mm10.chr11                22122012 4010 - 122082543 I
e aotNan1.NW_018502359v1     7019899 396 -   7032639 T
e cebCap1.NW_016107730v1     1905940 367 +   1920343 T
e canFam3.chr9              21480772 23414 +  61074082 I
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=3279.000000
s hg38.chr17_JH159148v1_alt    28344 2 +     88070 tc
s panTro5.chr17             16339443 2 +  83181570 TC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16244321 2 +  83442489 tc
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4091007 2 +   4267968 tc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2071361 2 -   2193130 tc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28047085 2 -  80997621 TC
i macFas5.chr16             C 0 T 335
s calJac3.chr5              46145840 2 - 159171411 CC
i calJac3.chr5              C 0 T 400
e mm10.chr11                22122012 4010 - 122082543 I
e aotNan1.NW_018502359v1     7019899 396 -   7032639 T
e cebCap1.NW_016107730v1     1905940 367 +   1920343 T
e canFam3.chr9              21480772 23414 +  61074082 I
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e saiBol1.JH378271           1854835 415 +   3513951 T
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=30473.000000
s hg38.chr17_JH159148v1_alt    28346 35 +     88070 aggcaggaggttctggcttacatcatcaggcaatt
s panTro5.chr17             16339445 35 +  83181570 AGGCAGGAGGTTCTGGCTTACATCATCAGGCAATT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16244323 35 +  83442489 aggcaggaggttctggcttacatcatcaggcaatt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4091009 35 +   4267968 aggcaggaggttctggcttactccatcaggcaatt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2071363 35 -   2193130 aggcaggaggttctgggttactccatcaggcaatt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e aotNan1.NW_018502359v1     7019899 396 -   7032639 T
e cebCap1.NW_016107730v1     1905940 367 +   1920343 T
e canFam3.chr9              21480772 23414 +  61074082 I
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e saiBol1.JH378271           1854835 415 +   3513951 T
e calJac3.chr5              46145842 400 - 159171411 T
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e macFas5.chr16             28047087 335 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=27771.000000
s hg38.chr17_JH159148v1_alt    28381 28 +     88070 atctagacaacagaagtgctggccagtg
s panTro5.chr17             16339480 28 +  83181570 ATCTAGACAACAGAAGTGCTGGCCAGTG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16244358 28 +  83442489 atctagacaacagaagtgctggccagtg
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4091044 28 +   4267968 atctagacaacagaagtgctggccagtg
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2071398 28 -   2193130 atctagacaacagaagtgctggctagtg
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s saiBol1.JH378271           1854420 16 +   3513951 ATCTAGACAACAGATC------------
i saiBol1.JH378271          T 415 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e aotNan1.NW_018502359v1     7019899 396 -   7032639 T
e cebCap1.NW_016107730v1     1905940 367 +   1920343 T
e canFam3.chr9              21480772 23414 +  61074082 I
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e calJac3.chr5              46145842 400 - 159171411 T
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e macFas5.chr16             28047087 335 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=2800.000000
s hg38.chr17_JH159148v1_alt    28409 1 +     88070 g
s panTro5.chr17             16339508 1 +  83181570 G
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16244386 1 +  83442489 g
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4091072 1 +   4267968 g
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2071426 1 -   2193130 g
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s saiBol1.JH378271           1854436 1 +   3513951 G
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1905573 1 +   1920343 G
i cebCap1.NW_016107730v1    T 367 C 0
s aotNan1.NW_018502359v1     7019503 1 -   7032639 G
i aotNan1.NW_018502359v1    T 396 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e canFam3.chr9              21480772 23414 +  61074082 I
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e calJac3.chr5              46145842 400 - 159171411 T
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e macFas5.chr16             28047087 335 -  80997621 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=152426.000000
s hg38.chr17_JH159148v1_alt    28410 57 +     88070 tgaagggagtatagaacttgtggtaactaatg-gagatgatgaatctcagGTGAACCC
s panTro5.chr17             16339509 57 +  83181570 TGAAGGGAGTATAGAACTTGTGGTAACTAATG-GAGTTGATGAATCTCAGGTGAACCC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16244387 57 +  83442489 tgaagggagtatagaacttgtggtaactaatg-gagttgatgaatctcagGTGAACCC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4091073 57 +   4267968 cgaagggagcatagaacttgtggtaactaatg-gagatgatgaatctcagGTGAACCC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2071427 57 -   2193130 tgaagggagtatagaaCTTGTGGTAACTAATG-GAGAAGATGAATGTGAGGTGAACCC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s calJac3.chr5              46145442 58 - 159171411 TGAAGGGAGTTTAGAGCCTTGTGTAACTAATGAAGAATTATGAATCTCAGGTGCACCC
i calJac3.chr5              T 400 C 0
s saiBol1.JH378271           1854437 57 +   3513951 TGAAGGGAGTATAGAACTTGTGGTAATGAATG-GGGATTATGAATCTCAGGGGAACCC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1905574 57 +   1920343 TGAAGGGAGTATAGAACTTGTGGTAACTAATG-GAGATTATGACTCTCAGGTGAACTC
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7019504 57 -   7032639 TGAAGGGAGTGTAGAACTTGTGGTAACTAATG-GAGATTACAAATCTCAGGTGAACCC
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e canFam3.chr9              21480772 23414 +  61074082 I
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e macFas5.chr16             28047087 335 -  80997621 T
e rheMac8.chr16             30133917  3 -  77216781 I

a score=11187.000000
s hg38.chr17_JH159148v1_alt    28467 3 +     88070 TAT
s panTro5.chr17             16339566 3 +  83181570 TAT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16244444 3 +  83442489 TAT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4091130 3 +   4267968 TAT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2071484 3 -   2193130 TAT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28046752 3 -  80997621 TAC
i macFas5.chr16             T 335 C 0
s calJac3.chr5              46145500 3 - 159171411 TAT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1854494 3 +   3513951 TAT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1905631 3 +   1920343 TAT
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7019561 3 -   7032639 TAT
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e canFam3.chr9              21480772 23414 +  61074082 I
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e colAng1.NW_012122154v1     2205555 9501 +   4569836 T
e chlSab2.chr16             64973357 40055 +  75148670 T
e cerAty1.NW_012006043v1     2033978 45298 -   8458610 T
e macNem1.NW_012014910v1     2133546 30171 +  10377808 T
e rheMac8.chr16             30133917 3 -  77216781 I

a score=43592.000000
s hg38.chr17_JH159148v1_alt    28470 6 +     88070 TACAGT
s panTro5.chr17             16339569 6 +  83181570 TACAGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16244447 6 +  83442489 TACAGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4091133 6 +   4267968 TACGGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2071487 6 -   2193130 TACAGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30133920 6 -  77216781 TACAGC
i rheMac8.chr16             I 3 C 0
s macFas5.chr16             28046755 6 -  80997621 TACAGC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2103375 6 +  10377808 TACAGC
i macNem1.NW_012014910v1    T 30171 C 0
s cerAty1.NW_012006043v1     1988680 6 -   8458610 TACAGC
i cerAty1.NW_012006043v1    T 45298 C 0
s chlSab2.chr16             64933302 6 +  75148670 TACAGC
i chlSab2.chr16             T 40055 C 0
s colAng1.NW_012122154v1     2196054 6 +   4569836 TACAGT
i colAng1.NW_012122154v1    T 9501 C 0
s calJac3.chr5              46145503 6 - 159171411 TAGAGC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1854497 6 +   3513951 TATAGT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1905634 6 +   1920343 TATAGT
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7019564 6 -   7032639 TATAGT
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e canFam3.chr9              21480772 23414 +  61074082 I
e manLeu1.NW_012106252v1     2235222 62204 +   4244037 T
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T

a score=3156786.000000
s hg38.chr17_JH159148v1_alt    28476 330 +     88070 AGTAACTGTATCTTGTTCCATTTGGCCTTTATTTTATATCTCtccttcccttcttccttcctgccttcctttcctcttaccttcccttccttcTATTCTACCATccttttcatacagacaccagtcatattgaataagaagaccagtttattccaatgtgaccttacttaactagttacattctcaatgaccttatttGGCTATGAATTTCTGGGG-AAAAAAATCAATCCAAATATGGAAGTATCTCAGAGCGTGTCCATGCCTAGTGATAACCACAAATGAGTAACAGCAATCACAGTGGACAACGGTATAGTAACTAGCAGCTCAGA-A
s panTro5.chr17             16339575 329 +  83181570 AGTAACTGTATCTTGTTCCATTTGGCC-TTATTTTATATCTCtccttcccttcttccttcctgcctttctttcctcttaccctcccttccttcTATTCTACCATccttttcatacagacaccagtcatattgaataagaagaccagtttattccaatgtgaccttacttaactagttacattctcaatgaccttatttGGCTATGAATTTCTGGGG-AAAAAAATCAATCCAAATATGGAAGTATCTCGGAGCGTGTCCATGCCTAGTGATAACCACAAATGAGTAACAGCAATCACAGTGGACAACGGTATAGTAACTAGCAGCTCAGA-A
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16244453 331 +  83442489 AGTAACTGTATCTTGTTCCATTTGGCCTTTATTTTATATCTCtccttcccttcttccttcctgccttcctttcctcttaccctcccttccttcTATTCTACCATccttttcatacagacaccagtcatattgaataagaagaccagtttattccaatgtgaccttacttaactagttacattctcaatgaccttatttGGCTATGAATTTCTGGGGAAAAAAAATCAATCCAAATATGGAAGTATCTCGGAGCGTGTCCATGCCTAGTGATAACCACAAATGAGTAACAGCAATCACAGTGGACAACGGTATAGTAACTAGCAGCTCAGA-A
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4091139 330 +   4267968 AGTAACTGTATCTTGTTCCATTTGGCCTTTATTTTATATCTCtccttcccttcttccttcctgccttcctttcctcttaccctcccttccttcTATTCTACCATccttttcatacagacaccagtcatattgaataagaagaccagtttattccaatgtgaccttacttaactagttacattctcaatgaccttatttGGCTATGAATTTCTGAGG-AAAAAAATCAATCCAAATATGGAAGTATCTCAGAGCGTGTCCATGCCTAGTGATAACCACAAATGAGTAACAGCAATCACAGTGGACAACGGTATAGTAACTAGCAGCTCAGA-A
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2071493 330 -   2193130 AGTAACTGTATCTTGTTCCATTTGGCTTTTATTTTATATCTCtccttcccttctttcttccttccttccttccctcttaccctccctcacttccattctaccAAccttttcatacagacaccagtcatattgaataagaggaccagtttattccaatgtgaccttatttaactagttacattctcaatgaccttatttGGCTATGAATTTCTGGGG-GAAAAAATCAATCCAAATATGGAAGTATCTCAGAGCGTGTCCATGCCTAGTGATAACCACAAATGAGTAACAGCAATCACAGTGGACAACGGTATAGTAACTAGCAGCTCAGA-A
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30133926 329 -  77216781 AGTAACTGTATCTTGTTTTATTTGGCCTTTATTTTATAtc-ctccttcccttctttcttcctgccttcctttcctcttaccttccctcccttccattctaccATccttttcatacagacaccagtcatattgaataagaggacccgtttattccaatgtgaccttacttaaccagttacattctcaatgaccttatttGGCTATGAATTTCTGGGG-AAGCAAATCAATCCAActattggagtatctcagagcgcatccatgcccagtgataaccacaaatgagtaacagcaatcacagtggacaatggtatagtaaccagcagctcaga-c
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28046761 321 -  80997621 AGTAACTGTATCTTGTTTTATTTGGCCTTTATTTTATAtc-ctccttcccttctttcttcctgccttcctttcctcttaccttccctcccttccattctaccATccttttcatacagacaccagtcatattgaataagaggacccgtttattccaatgtgaccttacttaaccagttacattctcaatgaccttatttGGCTATGAATTTCTGGGG-AAGCAAATCAATCCAACTATTGGAGTATCTCAGAGC--------GCCCAGTGATAACCACAAATGAGTAACAGCAATCACAGTGGACAATGGTATAGTAACCAGCAGCTCAGA-C
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2103381 329 +  10377808 AGTAACTGTATCTTGTTTTATTTGGCCTTTATTTTATAtc-ctccttcccttctttcttcctgccttcctttcctcttaccttccctcccttccattcTACCATccttttcatacagacaccagtcatattgaataagaggacccgtttattccaatgtgaccttacttaaccagttacattctcaatgaccttatttGGCTATGAATTTCTGGGG-AAGCAAATCAATCCAActattggagtatctcagagcgcatccatgcccagtgataaccacaaatgagtaacagcaatcacagtggacaatggtatagtaaccagcagctcaga-c
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1988686 329 -   8458610 AGTAACTGTATCTTGTTTTATTTGGCCTTTATTCTATAtc-ctccttcccttctttcttcctgccttcctttcctcttaccttccctctcttccattctaccATccttttcatacagacaccagtcatattgaataagaggacccgtttattccaatgtgaccttacttaaccagttacattctcaatgaccttatttGGCTATGAATTTCTGGGG-AAGCAAATCAATCCAActattggagtatctcagagcacgtccatgcccagtgataaccacaaatgagtaacagcaatcacagtggacaatggtatagtaaccagcagctcaga-c
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64933308 329 +  75148670 AGTAACTGTATCTTGTTTTATTTGGCCTTTATTTTATAtc-ctccttcccttctttcttcctgccttcctttcctcttaccttccctcccttccattcTACCATGcttttcatacagacaccagtcatattgaataagaggacccgtttattccaatgtgaccttacttaaccagttacattctcaatgaccttatttGGCTATGAATTTCTGGGG-AAGCAAATCAATCCAActattggagtatctcagagcgcgtccatgcccagtgataaccacaaatgagtaacagcaatcacagtggacaatggtatagtaaccagcagctcaga-c
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2173018 323 +   4244037 AGTAACTGTATCTTGTTTTATTTGGCCTTTATTTTATAtc-ctccttcccttctttcttcctgccttcctttcctcttaccttccctcccttccattcTACCATccttttcatacagacaccagtcatattgaataagaggacccgtttattccaatgtgaccttactta-------acattctcagtgaccttatttGGCTATGAATTTCTGGGG-AAGCAAATCAATCCAACTATTGGAGTATCTCAGAGCGCATCCATGCCCAGTGATAACCACAAATGAGTAACAGCAATCACAGTGGATAATGGTATAGTAACCAGCAGCTCAGACC
i manLeu1.NW_012106252v1    T 62204 C 0
s colAng1.NW_012122154v1     2196060 329 +   4569836 AGTAACTGTATCTTGTTTCATTTGGCCTTTATTTTATAtc-ctccttcccttctttcttcctgccttcctttcctcttaccttccctcccttccattcTACCATccttttcatacagacaccagtcatattgaataagaggacccatttattctagtgtgaccttacttaaccagttacattctcaatgaccttattGGGCTATGAATTTCTGGGG-AAGCAAATCAATCCAACTATTGGAGTATCTCAGAGTGTGTCCATGCCCAGTGATAACCACAAATGAGTAACAGCAATCACAGTGTACAATGGTACAGTAACTAGCAGCTCAGA-C
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46145509 328 - 159171411 AGTAACTGTATCTTATTCCA-TTGGCTTTTATTTTCTCTCTCtctttcccttctttcttcctgccttcctttcctctttccctccttccCTGTCACTCTACTATGcttttcatacagaaaacggtcatattgaatcaga-gcccggtttattccagtgtgaccttacttaactagttacattctcagtgaccctatttGGTGATGAATTTCTGGGG-AAACAAATCAATCCAAATATTGGAGTATCTCAGAGTGTGTCCATACCCAGTGATAACCCCAAATGAGTAACAGCAACCACAGTGGACAATGGTATAGTAACCAGAGGCTCAGA-C
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1854503 329 +   3513951 AGTAACTGTATCTTATTCCA-TTGGCTTTTATTTTATATCTCtctttcccttctttcttcctgacttcctttcctctttccctccttccCTTCCACTCTGCTATGcttttcatatggacaacagtcatattgaatcagaggccccgtttattccagtgtgaccttacttaactagttacattctcagtgaccctatttGGTGACAAATTTCTGGGG-AAACGAATCAATCCAAATATTGGAGTATCTCAGAGTGTGTCCATACCCAGTGGCAGCCACAAATGAGTAACAGCAACCACAGTGGACAGTGGTATAGTCGCCAGAGGCTCGGA-C
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1905640 324 +   1920343 ATTAACTGTATCTTATTCCA-TTGGCTTTTATTTTATATCTCTCTTTCCCTTCTTTCTTCCTGACTTCCTTTCCTCTTTCCCTCCTTC-----CACTCTGCTATGcttttcatacagacaacagttatattgaatcagaggcccagtttattccagtgtgaccttacttaactagttacattctcaatgaccctatttGGTGATGAATTTCTGGGG-AAACAAATCAATCCAAATATTGGAGTATCTCAGAGTGTGTCCATGCCCAGTGATAACCACAAATGAGTAACAGCAACCACAGTGGACAATGGTATAGTAACCAGAGGCCCAGA-C
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7019570 329 -   7032639 AGTAACTGTATCATTTTCCA-TTGGCTTTAATtttatatctctctttcccttctttcttcctgccttcctttcctctttccctccttcccttccACTCTGCTATGcttttcatacagacaccagtcatattgaatcagaggcccagtttattccagtgtgaccttacttagctagttacattctcaaccaccctatttGGTGATGAATTTCTGGGG-AAACAAATCAATCCAAATATTGGAGTATCTCAGAGTGCGTCCATACCCAGTGATAGTCACAAATGAGTAACAGCAGCCACAGTGGACAATGGCATAGTAACCAGAGGCTCAGA-C
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e canFam3.chr9              21480772 23414 +  61074082 I
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T

a score=6279985.000000
s hg38.chr17_JH159148v1_alt    28806 629 +     88070 CCTTCTGTCcctcttctttctc----tcctcctctacctccttctcctAGAATTT--------CTGGCTGTCCATCACAGTTAAGAAGCAAAGATTGGATCTGAGTGGAGCGAATGACAGACCATAGATGACA-TTTTCATtatcctgtccatatttctcagatcttagtgtgcttgggccagtttctatttgccag--aatctgcatctctgtgcctaag----ggctcttgtattgcaactgcagaaagtcatgtcacct--gtgcattccacacagaggactatcactcaactcaaccaatgatcttggagagctgatttacaaagactctagctc---ccttattcctgaagatagagattgctaa--------------tttatgtgtttttca-----tcatttctgatagttttccctttggtttaaattttagttggtcactgtgatacttactggctcaatagtatacccttttctgtatctcttctctg-atccctaatggtgtgatctgcacttcc-----caataaactactttcactggaatatttttc-taagtatctgttctgggagaaaccacactatgacaTTACAttaactctctcagcctcaatttcctcatctctacaatggtaacattaatacctactttgaacatttcctcaagaat
s panTro5.chr17             16339904 629 +  83181570 CCTTCTGTCCCTCTTCTTTCTC----TCCTCTTCTACCTCCTTCTCCTAGAATTT--------CTGGCTGTCCATCACAGTTAAGAAGCAAAGATTGGATCTGAGTGGAGCGAATGACAGACCATAGATGACA-TTTTCATTATcctgtccatatttctcagatcttagtgtgcttgggtcagtttctatttgccag--aatctgcatctctgtgcctaag----ggctcttgtattgcaactgcagaaagtcatgtcacct--gtgcattccacacagaggaatatcactcaactcaaccaatgatcctggagagctgatttacaaagactctagctc---ccttattcctgaagatggagattgctaa--------------tttatgtgtttttca-----tcatttctgatagttttccctttggtttaaattttagttggtcactgtgatacttgctggctcaatagtatacccttttctgtatctcttctctg-atccctaatggtgtgatctgcacttcc-----caataaactactttcactggaatatttttc-taagtatctgttctgggagaaaccacactatgacaTTACAttaacgctctcagcctcaatttcctcatctctacaatggtaacattaatacctactttgaacatttcctcaagaat
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16244784 629 +  83442489 CCTTCTGTCCCTCTTCTTTCTC----TCCTCTTCTACCTCCTTCTCCTAGAATTT--------CTGGCTGTCCATCACAGTTAAGAAGCAAAGATTGGATCTGAGTGGAGCGAATGACAGACCATAGATGACA-TTTTCATtatcctgtccatatttctcagatcttagtgtgcttgggccagtttctatttgccag--aatctgcatctctgtgcctaag----ggctcttgtattgcaactgcagaaagtcatgtcacct--gtgcattccacacagaggaatatcactcaactcaaccaatgatcctggagagctgatttacaaagactctagctc---ccttattcctgaagatggagattgctaa--------------tttaagtgtttttca-----tcatttctgatagttttccctttggtttaaattttagttggtcactgtgatacttactggctcaatagtatacccttttctgtatctcttctctg-atccctaatggtgtgatctgcacttcc-----caataaactactttcactggaatatttttc-taagtatctgttctgggagaaaccacactatgacaTTACAttaactctctcagcctcaatttcctcatctctacaatggtaacattaatacctactttgaacatttcctcaagaat
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4091469 629 +   4267968 CCTTCTGTCcctcttctttctc----tcctcccctacctccttctcctAGAATTT--------CTGGCTGTCCATCATAGTTAAGAAGTAAAGATTGGATCTGAGTGGAGCGAATGACAGATCAGAGATGACA-TTTTCATtatcctgtccatatttctcagatcttagtgtgcttgggccagtttctatttgccag--aatctgcatctctgtgcctaag----ggctcttgtattgcaactgcagaaagtcatgtcacct--gtgcattccacacagaggactatcactcaactcaaccaatgatcctggagagctgatttacaaagactctagctc---ccttattcctgaagatggagattgctaa--------------tttatgtgtttttca-----tcatttctgatagttttccctttggtttaaattttagttggtcactgtgatacttactggctcaatagtatacccttttctgtatctcttctctg-atccctaatggtgtgatctgcacttcc-----caataaactactttcactggaatatttttc-taagtatctgttctgggagaaactacactatgacaTTACAttaactctctcagccttgctttcctcatctctacaatggtaacattaatacctactttgaacatttcctcaagaat
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2071823 628 -   2193130 CCTTCTGTCcctcttctttccc----tcctcctcttcttccttctcctAGAATTT--------CT-GCTGTCCATCACAGTTAAGAAGCAAAGATTGGATCTGAGTGGAGCGAATGGCAGATCATAGATAata-ttttcattatcctgtccatatttctcagatcttagtgtgcttgggccagtttctatttggcag--aatctgcatctctgtgcctaag----gtctcttgtattgcaactgcagaaagtcatgtcacct--gtgcattccacacagaggaatatcactcaactcaaccaatgattctggagaactgatttacaaagactctagctc---ccttattcctgaagatggaaattgctaa--------------tttgtgtgtttttca-----tcatttctgatagttttccctttggtttcaactttagttggtcgctgtgatacttactggctcaatagtgtacccttttctgtaactcttccctg-atccctaatggtgtgatctgcacttcc-----caataaactactttcactggaatatttttc-tcagtgtctgttctgggagaaaccacactatgataTTACAttaactctctcagactcaatttcctcatccctacaatggtaacattaatacctactttgaacatttcctcgagaat
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30134255 628 -  77216781 ccttcTGTCTctcttctttctc----tcctcctctccctccttctcctAGAATTT--------CTGGCTGTCCATCATAGTTAAGAAGCAAAGATTGGATCTCAGTGGAGCAAATGACAGATCATAGATAACA-TTTTCATTATCCTGTCCATATTTCTCGGATCTTAGTGTGCTTGAGTCAGTTTCCATTTGCCAG--AATCTGTATCTCTGTGCCTAAG----GGCTCTTGTATTGCAATTGCAGAAAGCCATGTCACCT--GTGCATTCCACACAAAGGAATATCACTCAActcaaccaatgattctggagagctgatttac-aagactctagctc---tcgtattcctgaagatggagattgctaa--------------tttatgtgttttcca-----tcatttctgatagttttccctttggtttaagctttagttggtcactgtgatacttactggctcaatagtgtgcccttttctgtatcacttccctg-atccctaatggtgtgatctgcacttcc-----caataaaacactttcactggaatatttttc-tcagtatctgttctgggagaaaccacactatgacaTTACAttaactctctcagtctcaattccttcatctctacaatggtaacactaatacctactttgaacatttcctagagaat
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28047082 628 -  80997621 CCTTCTGTCTctcttctttctc----tcctcctctccctccttctcctAGAATTT--------CTGGCTGTCCATCATAGTTAAGAAGCAAAGATTGGATCTCAGTGGAGCGAATGACAGATCATAGATAACA-TTTTCATTATCCTGTCCATATTTCTCGGATCTTAGTGTGCTTGAGTCAGTTTCCATTTGCCAG--AATCTGTATCTCTGTGCCTAAG----GGCTCTTGTATTGCAATTGCAGAAAGCCATGTCACCT--GTGCATTCCACACAAAGGAATATCACTCAActcaaccaatgattctggagagctgatttac-aagactctagctc---tcgtattcctgaagatggagattgctaa--------------tttatgtgttttcca-----tcatttctgatagttttccctttggtttaagctttagttggtcactgtgatacttactggctcaatagtgtgcccttttctgtatcacttccctg-atccctaatggtgtgatctgcacttcc-----caataaaacactttcactggaatatttttc-tcagtatctgttctgggagaaaccacactatgacaTTACAttaactctctcagtctcaattccttcatctctacaatggtaacactaatacctactttgaacatttcctagagaat
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2103710 628 +  10377808 ccttcTGTCTctcttctttctc----tcctcctctccctccttctcctAGAATTT--------CTGGCTGTCCATCATAGTTAAGAAGCAAAGATTGGATCTCAGTGGAGCGAATGACAGATCATAGATAACA-TTTTCATTATCCTGTCCATATTTCTCGGATCTTAGTGTGCTTGAGTCAGTTTCCATTTGCCAG--AATCTGTATCTCTGTGCCTAAG----GGCTCTTGTATTGCAATTGCAGAAAGCCATGTCACCT--GTGCATTCCACACAAAGGAATATCACTCAActcaaccaatgattctggagagctgatttac-aagactctagctc---tcgtattcctgaagatggagattgctaa--------------tttatgtgttttcca-----tcatttctgatagctttccctttggtttaagctttagttggtcactgtgatacttactggctcaatagtgtgcccttttctgtatcacttccctg-atccctaatggtgtgatctgcacttcc-----caataaaacactttcactggaatatttttc-tcagtatctgttctgggagaaaccacactatgacaTTACAttaactctctcagtctcaattccttcatctctacaatggtaacactaatacctactttgaacatttcctagagaat
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1989015 628 -   8458610 ccttcTGTCTctcttctttctc----tcctcctctccctccttctcctAGAATTT--------CTGGCTGTCCATCACAGTTAAGAAGCAAAGATTGGATCTCAGTGGAGCGAATGACAGATCATAGATAACA-TTTTCATTATCCTGTCCATATTTCTCGGATCTTAGTGTGCTTGAGTCAGTTTCCATTTGCCAG--AATCTGTATCTCTGTGCCTAAG----GGCTCTTGTATTGCAATTACAGAAAGCCATGTCACCT--GTGCATTCCACACAGAGGCATATCACTCAActcaaccaatgattctggagagctgatttac-aagactctagctc---tcgtattcctgaagatggagattgctaa--------------tttatgtgttttcca-----tcatttctgatagttttccctttggtttaagctttagttggtcactgtgatacttactggctcaatagtgtacccttttctgtatcacttccctg-atccctaatggtgtgatctgcacttcc-----caataaaatactttcactggaatatttttc-tcagtatctgttctgggagaaaccacactatgacaTTACAttaactctctcagtctcaattccttcatctctacaatggtaacactaatacctactttgaacatttcctagagaat
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64933637 628 +  75148670 ccttcTGTCTCTCTTCTTTCTC----TCCTCCTCTCCTTCCTTCTCCTAGAATTT--------CTGGCTGTCCATCACAGTTAAGAAGCAAAGATTGGATCTGAGTGGAGCGAATGACAGATCATAGATGACA-TTTTCATtatcctgtccatatttctcggatcttagtgtgcttgagtcagtttccatttgccag--aatctgtatctctgtgcctaag----ggctcttgtattgcaattgcagaaagccatgtcaccc--gtgcattccacatagaggaatatcactcaactcaaccaatgattctggagagctgatttac-aagactctagctc---tcgtattcctgaagatggagattgctaa--------------tttatgtgttttcca-----tcatttctgatagttttccctttggcttaagctttagttggtcactgtgatacttactggctcaatagtgtacccttttctgtatcacttccctg-atccctaatggtgtgatctgcatttcc-----cgataaaatactttcactggaatatttttc-tcagtatctgttctgggagaaaccacactatgacaTTACAttaactctctcagtctcaattccttcatctctacaatggtaacactaatacctactttgaacatttcctagagaat
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2173341 628 +   4244037 CCTTCTGTCTCTCTTCTTTCTC----TCCTCCTCTCCCTTCTTCTCCTAGAATTT--------CTGGCTGTCCATCACAGTTAAGAAGCAAAGATTGGATCTGAGTGGAGCGAATGACAGATCATAGATAACA-TTTTCATTATCCTGTCCATATTTCTCAGATCTTAGTGTGCTTGAGTCAGTTTCCATTTGCCAG--AATCTGTATCTCTGTGCCTAAG----GGCTCTTGTATTGCAATTACAGAAAGCCATGTCACCT--GTGCATTCCACACAGAGGAATATCACTCAActcaaccaatgattctggagagctgatttac-aagactctagctc---tcgtattcctgaagatggagattgctaa--------------tttatgtgttttcca-----tcatttctgatagttttccctttggtttaagctttagttggtcactgtgatacttactggctcaatagtgtacccttttctgtatcacttccctG-ATCCTTAATGGTGTGATCTGCACTTTC-----CAATAAAATACTTTCACTGGAATATTTTTC-TCAGTATCTGTTCTGGGAGAAACCACACTATGACATTACAttaactctctcagtctcaattccttcatctctacaatggtaacactaatacctactttgaacatttcctagagaat
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2196389 627 +   4569836 ccttctgtctctcttctttctc----tcctcctctccctccttctcctAGAATTT--------CTGGCTGTCCATCACAGTTAAGAAGCAAAGATTGGATCTGAGTGGAGCAAATGACAGATCATAGATAACA-TTTTCATTATCCTGTCCATATTTCTTGGATCTTAGTGTGCTTGAGTCAGTTTCCATTTGCCAG--AATCTGTATCTCTGTGCCTAAG----GGCTCTTGTATTGCAACTGCAG-AAGCCATGTCACCT--GTGCATTCCACACAGAGGAATATCACTCAActcaaccaatgattctggagagctgatttac-aagactctagctc---tcgtattcctgaagatggagattgctac--------------tttatgtgtttttca-----tcacttctgatagttttccctttggtttaagctttagttggtcactgtgatacttactggctcaatagtgtaccctcttctgtatcacttccctg-atccctaatggtgtgatctgcacttcc-----caataaaatactttcactggaatatttttc-tcagtatctgttctgggagaaaccacactatgacaTTACAttaactctctcagtctcaatttcttcatctctacaatggtaacactaatacctactttgaacatttcctagagaat
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46145837 620 - 159171411 ACTCCTGTCCTTCTTCTTCCTC----TCTTCCTCTCCTTCCTTCTCCTAGAATTT--------CTGGCTGTCCATCGCAGTTAAGAAGCAAAGATTAAATCTGAGTGGAGCAAACGGCAGATCATAGAGAACATTTTTCATTATCCTGCCGACATATCTTGGattttactgtgcttgggccattttctatctggcag--aatctgcatctctgtgcgtaag----tactcttacattgcagctggagagagtcatgtcacct--gtgcatgccatacagaggaatatcact---------caatgattcctgagagcttatttacaaagactctagctc---ccttatttctgaagttggagaatgctga--------------tatacgtaacttttaaaaagtcatttctgatagttttccttttggtttaagctttagttggtcactgcggtgcttactggctcaatagtgtacccttttctgtatcacttccctg-atccctaccagtgtgatctgcacttcc-----cagcaaactactttcactagaatg---ttc-tcagtgtctgttctgggagaaaccacactatgacattacattatctctctcagcctcaatttcctcatctctaaaatggtaac---aatatctactgtgcacatttctttgagaat
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1854832 628 +   3513951 ACTGCTGTCCTTCTTCTTCCTC----TCCTC--CTCCCTCCTTCTCCTAGAATTT--------CTGGCTGTCCGTCACAGTTAAGAAGCAAAGATTAAATCTGAGTGGAGCAAACGGCAGGTCATAGAGAATGTTTTTCATtatcccgccggtatgtctcggattttactgtgcttgggccattttctatctgccag--aatctgcatctctgtgcataag----ggctcttatattgcagctggagaaagtcatgtcacat--gtgcatgccacacagaggaatatcact-----caaccaatgattcctgagagcttatttacaaagactctagctc---ccttattcttgaagttggagcatgctga--------------tatatgtaattttaaaaaaatcatttctgagagttttccttttggtttaaactttagctggtcactgtgatacttattggctcgatagtgtaccctttcctgtatcacttccctg-atccctactggtgtgatctgtacttcc-----cagtaaactactttcactagaatgttcttc-tcagtgtctcttctgggagaaaccacactatgacattacattatctctctcagcctcaatttcctcatttctaaaatggtaacattaacatctactgtgcacatttctttaagaat
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1905964 628 +   1920343 ACtcctctccttcttcttcctc----tcttcctctccctcattctcCTAGAATTT--------CTGGCTGTCCATCACAGTTAAGAAGCAAAGATTAAATCTGAGTGGAGCAAACGGCAGGTCATAGAGAACGTTTTTCATtatcccgccgatatatcttggattttactgtgcttgggccattttctacctgctag--aatctgcatctctgtgcataag----ggctcttatattgcagctggagaaagtcatgtcaccg--gtgcatgccacacagaggagtatcact-----caaccaatgattcctgagagcttatttacaaagactctagctc---ccttattcctgaagttggaaaatgctga--------------tatatgtaatttttaaaa--tcatttctgagagttttccttttggtttaagctttagttggtcactgcgatacctactggctcaatagtgtacccttttctgtatcacttccctg-atccctactggtgtgatctacacttcc-----cagtaaactactttcactagaatgttcttc-tcagtgcctgttctgggagaaaccacactatgacattacattatctctctcagcctcaatttcctcatctctgaaatggtaacattaatatctactgtgcacatttctttgagaat
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7019899 626 -   7032639 ACTCCTGTCCTTCTTCTTCCTC----TCTTCCTCTCCCTC---CTCCTAGAATTT--------CTGGCTGTCCATCACAGTTAAGAAGCAAAGATTAAAGCCGAGTGGAGCAAACGGCAGATCATAGAGAACGTTTTTCATTATCCTGCCAATGTATCTTGGattttactgtgcttgggccattttctatctggcag--aatctgcatctctgtgcataag----ggctcttatattgcagctggagaaagtcatgtcacct--gtgaatgccacacagaggaatatcact-----caaccaatgattcctgaaagcttatttacaaagactctagctc---ccttactcctgaagttggagaatgctga--------------catatgtaattttaaaaaa-tcatttctgatagttttccttttggtttaagctttagttggtcactgcaatacttactggctcaatagtgtacccttttctgtatcacttacctg-atccctactggtgtgatctgcacttcc-----cagtaaactactttcactacaatgttcttc-tcagtgtctgttctgggagaaaccacattatgacattacattatctctctcagcctcaatttcctcatctctaaaatggtaacattaatatctactgtgcaaatttctttgagaat
i aotNan1.NW_018502359v1    C 0 C 0
s canFam3.chr9              21504186 640 +  61074082 ccttctcctcctcttttccctcgtctttctcctctgtcttcctTTAACACAAATTGTGCCCGCCTGCCTGCCTGCCATCGTGAAGGAGAAAATGTGGGGTCTGAGTGGAGAAAATCGTGGACTGTAGATGATG-CCTTACACACGCCAGCCATAGAACTCAGATCTTCCTGTGTTCAGGACAATTTCTATGCAGCAGCAGATCCGCATCTCTATGCCTCGGGGCTGGCTGTTTTCATGCAACAGCAGGATGTCATGTTGCCTGGGTGTGTGCCGCACTGACAGAAAC------GCTCAACCAATGCTTCTGGAGAGTTGGTTTAT-GTGACTACAGGGCTGTCCTTGCTCCTGAAATAGGAGAATCCTGACATGGCtctttctttctttcttttttttt-----ttttttctGATATATTTC--TCAGGATTGAGC--CAGTTGAAAACTGTGACgctggc---------------ctccatcctgtatcacttccccaccttccaaccagtgggatctgccctccctcccgcaagaaaccacat--gcctgaatgctgttcttcagagtagcttctgggaaaaaccaaactctgacaTTAC-----CTATCTCTGTCCTGATTTCCTCACTTCTACCATGGGAACCTTAGGATGTACTTTAAGAATTCCTTCAAGGAT
i canFam3.chr9              I 23414 I 15840
e mm10.chr11                22122012 4010 - 122082543 I
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T

a score=1933540.000000
s hg38.chr17_JH159148v1_alt    29435 213 +     88070 aaatattaatgaacataaagcatgtagtcactatctatcaaatagtaggcaacctagaacatattagttctttttttGTCCAGAAAACTTAAAAAATAATTTTAATATTGAATATAAGAATATATTTAAAATAACTAACTAGATCAACTAAATTCTTTCtttactagttttattgaggtataattaacaaataaaaattgtgtatatgtaagg
s panTro5.chr17             16340533 213 +  83181570 aaatattaatgaacataaagcatgtagtcactatctatcaaacagtgggcaacctagaacatattagttctttttttGTCCAGAAAACTTAAAAAATAATTTTAATATTGAATATAAGAATATATTTATAATAACTAACTAGATCAACTAAATTCTTCCtttactagttttattgaggtataattaacaaataaaaattgtgtatatgtaagg
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16245413 213 +  83442489 aaatattaatgaacataaagcatgtagtcactatctatcaaacagtgggcaacctagaacatattagttctttttttGTCCAGAAAACTTAAAAAATAATTTTAATATTGAATATAAGAATATATTTATAATAACTAACTAGATCAACTAAATTCTTTCtttactagttttattgaggtataattaacaaataaaaattgtgtatatgtaagg
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4092098 211 +   4267968 aaatattaatgaacataaagcatgtagtcactatctatcaaatagtaggcaacttagaacatattagttctttttttGTCCAGAAAACTTAAAAAATAATTTTAATATT--ATATAAGAATATATTTATAATAACTAACTAGATCAACTAAATTCTTTCtttactagttttgttgaggtataattaacaaataaaaattgtgtatatgtaagg
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2072451 209 -   2193130 aaatattaatgaacataaagcatctagtcactatctatcaaatagtaggcaacctagaacatattagttctttttttGTCCAGAAAACTCAAAAAATAATTTTAATATTGAATATAAGAATATATTTATAATAACTAACTAGATCAACTAAATTCTTTCtttattagttttattgaggtacaatt----aataaaaattgtgtatatgtaagg
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30134883 206 -  77216781 aaatattagtgaacataaagcatttagtcactacctatcaagtagtaggcaacctggaacatattagttc---ttttgttCAGAAAACTTAAAAAATAATTTTAATATTGAATACAAGAATATATTTATAATAACTAACTAGATCAACTAAA----TTCtttactagctttattgaggtataattaacaaataaaaattatgtatatttaagg
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28047710 206 -  80997621 aaatattagtgaacataaagcatttagtcactacctatcaagtagtaggcaacctggaacatattagttc---ttttgttCAGAAAACTTAAAAAATAATTTTAATATTGAATACAAGAATATATTTATAATAACTAACTAGATCAACTAAA----TTCtttactagctttattgaggtataattaacaaataaaaattatgtatatttaagg
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104338 206 +  10377808 aaatattagtgaacataaagcatttagtcactacctatcaagtagtaggcaacctggaacatattagttc---ttttgttCAGAAAACTTAAAAAATAATTTTAATATTGAATACAAGAATATATTTATAATAACTAACTAGATCAACTAAA----TTCtttactagctttattgaggtataattaacaaataaaaattatgtatatttaagg
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1989643 210 -   8458610 aaatattagtgaacataaagcatttagtcactacctatcaagtagtaggcaacctggaacatattagttc---ttttgttCAGAAAACTTAAAAAATAATTTTAATATTGAGTACAAGAATATATTTATAATAACTAACTAGATCAACTAAATTCTTTCtttactagctttattggggtataattaacaaataaaaattgtgtatatttaagg
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934265 210 +  75148670 aaatattagtgaacataaagcatttagtcactacctatcaagtagtaggcaacctggaacatattagttc---ttttgttCAGAAAACCTAAAAAATAATGTTAGTATTGAATATAAAAATATATTTATAATAACTAACTAGATCAACTAAATTCTTTCtttactagctttattgaggtataattaacaaataaaaattgtgtatatttaagg
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2173969 210 +   4244037 aaatattagtgaacataaagcatttagtcactacctatcaagtagtaggcaacctggaacatattagttc---ttttgttCAGAAAACTTAAAAAATAATTTTAATATTGAATACAAGAATATATTTATAATAACTAACTAGATCAACTAAATTCTTTCtttactagctttattgaggtataattaacaaataaaaattgtgtatatttaagg
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197016 206 +   4569836 aaatattagtgaacataaagcatttagtcactacctatcaagtagtaggcaacctggaacatattagttc---ttttgttCAGAAGACTTAAAAAATAATTTTAATATTGAATACAAGAATATATTTATAATAACTAA----ATCAACTAAATTCTTTCtttactagctttattgagatataattaacaaataaaaattgtgtatatttaagg
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46146457 210 - 159171411 aaatatcaatgaacataaaacatttagtaactatctatcaaatggtaggcaacctagaacatgttagctctttttttGTTCAGAAAACTTTAAAAATGATTTTAATATTGAAGATAAGAATA---TATTTGTAACTAACTAGATCAACTAAATTCTTTCtttactagctttattgaaatataattaacaaataaaatttgtgtatatttaaga
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1855460 207 +   3513951 aaatatgaatgaacataaaacatttagtcactatctatcaaatggtaggcaacctagaacatgttagctcttttTTCGTTCAGAAAACTTTAAAAATGATTATAATATTGAAGATAAGAATA---TTATAATAACTAACTAGATCAACTAAATTCt---tttactagttttattgagatataattaacaaatgaaatttgtgtatatttaaga
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1906592 209 +   1920343 aaagatgaatgaacataaaacatttagtaactatctatcaaatggtaggcaacccagaacatg-tggctctttttttGTTCTGAAAACTTTAAAAATGATTTTAATATTGAAGATAAGAATA---TTATAATAACTAACTAGATCAACTAAATTCTTTCtttgctagttttattgagatataattaacaaataaaatttgtgtatatttaaga
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7020525 208 -   7032639 aaatatgaatgaacataaaacattaattca-tatctatcaaatggtaggcaacctagaacatgttagctctttttttGTTCAGAAAACTTTAAAAATGATTTTAATATTGAAGATAAGAATATATTTATAATAACTAACTAGATCAACTAAATTC----tttactagctttattgagatataattaacaaataaaatttgtgtatatttaaga
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e canFam3.chr9              21504826 15840 +  61074082 I
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T

a score=62546.000000
s hg38.chr17_JH159148v1_alt    29648 11 +     88070 tataaaaggtt
s panTro5.chr17             16340746 11 +  83181570 tataaaaggtt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16245626 11 +  83442489 tataaaaggtt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4092309 11 +   4267968 tataaaaggtt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2072660 11 -   2193130 tataaaaggtt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135089 11 -  77216781 tataaaaggtt
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28047916 11 -  80997621 tataaaaggtt
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104544 11 +  10377808 tataaaaggtt
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1989853 11 -   8458610 tataaaaggtt
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934475 11 +  75148670 tataaaaggat
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174179 11 +   4244037 tataaaaggta
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197222 11 +   4569836 tataaaaggtt
i colAng1.NW_012122154v1    C 0 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e aotNan1.NW_018502359v1     7020733  0 -   7032639 C
e cebCap1.NW_016107730v1     1906801  0 +   1920343 C
e canFam3.chr9              21504826 15840 +  61074082 I
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e saiBol1.JH378271           1855667  0 +   3513951 C
e calJac3.chr5              46146667  0 - 159171411 C

a score=3578106.000000
s hg38.chr17_JH159148v1_alt    29659 383 +     88070 atgttttgaggtatatatatatatacagtgtgaaataataatatatttattagctcacatagtcaccatttcctttttattgttgtggtgtgaacatttaagatccactttctcagcaaatttcaggtatacaataaagtattttaaactatgtccacattagagtgcaccagatctgcagaacatattcgtcttatataactgaTGTTGGTC-ATGAGAATGTGCTAG---T---TCTCCTTTACCCCACCACCCAACGACTATCCCAGTCAGCGGCTTTTCTCTCTTTCTGGAATCTTCAGAGCATTCCAGATATACAGTCTCAAAAGATGGCATCTGTATTTTTTAAGGAATAACTTAAGTTCATTTTGCCTTGCCAATATGTATTC
s panTro5.chr17             16340757 385 +  83181570 atgttttgagatatatatatatatacagtgtgaaataatcatatatttattagctcacatagtcaccatttcctttttattgttgtggtgtgaacatttaagatccactttctcagcaaatttcaggtatacaa-aaagtattttaaactgtgtccacattagagtgcaccagatctgcagagcttattcgtcttatataactgaTGTTGGTC-ATGAGAAAGTGCTAGTTCT---TCTCCTTTACCCCACCACCCTACGACTATCCCAGTCAGCGGCTTTTCTCTCTTTCTGGAATCTTCAGAGCATTCCAGATATACAGTCTCAAAAGATGGCATCTGTATTTTATAAGGAATAACTTAAGTCCATTTTGCCTTGTCAATATGTATTC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16245637 385 +  83442489 atgttttgagatatatatatatatacagtgtgaaataatcatatatttattagctcacatagtcaccatttcctttttattgttgtggtgtgaacatttaagatccactttctcagcaaatttcaggtatacaa-aaagtattttaaactgtgtccacattagagtgcaccagatctgcagagcttattcgtcttatataactgaTGTTGGTC-ATGAGAAAGTGCTAGTTCT---TCTCCTTTACCCCACCACCCTACGACTATCCCAGTCAGCGGCTTTTCTCTCTTTCTGGAATCTTCAGAGCATTCCAGATATACAGTCTCAAAAGATGGCATCTGTATTTTATAAGGAATAACTTAAGTCCATTTTGCCTTGTCAATATGTATTC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4092320 386 +   4267968 atgttttgagatatatatatatataaagtgtgaaataatcatatatttattagctcacatagtcaccatttcctttttattgttgtggtgtgaacatttaagatccattttctcagcaaatttcaggtatgcaataaagtattttaaactatgtccacattagagtgcaccagatccgcagaacgtattcgtcttatataactgaTGTTGGTC-ATGAGAATGTGCTAGTTCT---TCTCCTTTACCCCATCACCCAACGACTATCCCAGTCAGCAGCTTTTCTCTCTTTCTGGAATCTTCAGAGCATTCCAGATATACAGTCTCAAAAGATGGCATCTGTATTTTATAAGGAATAACTTCAGTCCATTTTGCCTTGTCAATATGTATTC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2072671 378 -   2193130 atgtt--------tatatatatatatagtgtgaaataatcatatatttattagctcacatagttaccatttcctttttatttttgtggtgtgaacatttaagatccactttctcagcaaatttcaggtatacaataaagtattttaaactatatccacattagagtgcaccagatctgcagaatgtattcatcttatataactgatgttggtc-atgagaatgtgctagttct---tctcctttaccccactacccAACAACTATCTCAGTCAGCGGCTTTTCTCTCTTTCTGGAATCTTCACAGCATTCCAGATATACAGTCTCAAAAGATGGTATCTGTATTTTATAAGGAATAACTTAAGTTTATTTTGCCTTGTCAATATGTATTC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135100 383 -  77216781 atgttttg------atatatatattcattgtgaaataatcatatatttattagctcacatagttaccatttcctttttatttttgtggtgtgaacacttaagatccactttctcagcaaatttcaggtatacaataaagtattttaaactatatccacattagagtgcaccagatctgcagaacttattcatcttatataactgaTGTTGGTC-ATGAAAATGTGCTTGGTCTTTGTCTCCTTTACCCCATCACCCAGTGACTATCCCAATCAGTGGCTTTTCTCTCTTTGAGGAATCTTCAGAGCATTCTAGATATGCAGTCTCAAAAGATGGCATCTGTATTTTATAAGGAATAACTTAAGTTCCTTTTGTTTTGTCAATATGTTTTC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28047927 383 -  80997621 atgttttg------atatatatattcattgtgaaataatcatatatttattagctcacatagttaccatttcctttttatttttgtggtgtgaacacttaagatccactttctcagcaaatttcaggtatacaataaagtattttaaactatatccacattagagtgcaccagatctgcagaacttattcatcttatataactgaTGTTGGTC-ATGAAAATGTGCTTGGTCTTCGTCTCCTTTACCCCATCACCCAGTGACTATCCCAATCAGTGGCTTTTCTCTCTTTCTGGAATCTTCAGAGCATTCTAGATATGCAGTCTCAAAAGATGGCATCTGTATTTTATAAGGAATAACTTAAGTTCCTTTTGTTTTGTCAATATGTTTTC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104555 383 +  10377808 atgttttg------atatatatattcattgtgaaataatcatatatttattagctcacatagttaccatttcctttttatttttgtggtgtgaacacttaagatccactttctcagcaaatttcaggtatacaataaagtattttaaactatatccacattagagtgcaccagatctgcagaacgtattcatcttatataactgaTGTTGGTC-ATGAAAATGTGCTTGGTCTTCGTCTCCTTTACCCCATCACCCAGTGACTATCCCAATCAGTGGCTTTTCTCTCTTTCTGGAATCTTCAGAGCATTCTAGATATGCAGTCTCAAAAGATGGCATCTGTATTTTATAAGGAATAACTTAAGTTCCTTTTGTTTTGTCAATATGTTTTC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1989864 382 -   8458610 atgttttg------atatatatattcattgtgaaataatcatatatttattagctcacatagttaccatttcctttttatttttgtggtgtgaacacttaagatccactttctcagcaaatttcaggtatacaataaagtattttaaactatatccacattagagtgcaccagatctgcagaacttattcatcttatataactgaTGTTGGTC-ATGAAAATGTGCTTGTTCTTTGTC-CCTTTACCCCATCACCCAGTGACTATCCCAATCAGTGGCTTTTCTCTCTTTCTGGAATCTTCAGAGCATTCCAGATATACAGTCTCAAAAGATGGCATCTGTATTTTATAAGGAATAACTTAAGTTCCTTTTGTTTTGTCAATATGTATTC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934486 385 +  75148670 atgttttga----tatatatatattcattgtgaaataatcatatatttattagctcacatagttaccatttcctttttatttttgtggtgtgaacacttaagatccactttctcagcaaatttcaggtatacaataaagtattttaaactatatccacgttagagtgcaccagatctgcagaacttattcatcttatataactgaTGTTGGTC-ATGAAAATGTGCTTGTTCTTTGTCTCCTTTACCCCATCACCCAGTGACTATCCCAATCAGTGGCTTTTCTCTCTTTCTGGAATCTTCAGAGCATTCCACATATACAGTCTCAAAAGATGGCATCTGTATTTTATAAAGAATAACTTAAGTTCCTTTTGTTTTGTCAATATGTATTC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174190 382 +   4244037 atgttttg------atatagatattcattgtgaaataatcatatatttattagctcacatagttaccatttcctttttatttttgtggtgtgaacacttaagatccactttctcagcaaatttcaggtatacaataaagtattttaaactatatccacattagagtgcaccagatctgcagaacttattcatcttatataactgaTGTTGGTT-ATGAAAATGTGCTTGTTCTTTGTC-CCTTTACCCCATCACCCAGTGACTATCCCAATCAGTGGCTTTTCTCTCTTTCTGGAATCTTCAGAGCATTCCAGATATACAGTCTCAAAAGACGGCATCTGTATTTTATAAGGAATAACTTAAGTTCCTTTTGTTTTGTCAATATGTATTC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197233 383 +   4569836 atgttttg------atatccatattcattgtgaaataatcatatatttattagctcacatagttaccatttcctttttatttttgtggtgtgaacacttaagatccgctttctcagcaaatttcaggtatacaataaagtattttagactatatccacattagagtgcaccagatctgcagaacttattcatcttatataactgatgttggtc-atgaaaatgtgctagttcttcatctcctttaccccatcacccAGTGACTATCCCAATCAGTGGCTTTTCTCTCTTTCTGGAATCTTCAGAGCATTCTAGATATACAGTCTCAAAAGATGGCATCTGTATTTTATAAGGAATAACTTAAGTTCCTTTTGTTTTGTCAATATGTATTC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46146667 376 - 159171411 atgttttg------atacatatattcattgtgaaataatcacatatttattaactcacatggttaccatttcctttttatttttgtggtgtgaacatttaaga-caactttctcagcaaatttcaggtctacagtaaagtatttta-------tccacattagtgtacaccagatctgcagaacttattcatcatatataactgaTGTTGGCCAAAGAGAATGTGACAGTTCTTTGTCTCCTTTACCCCATCACCCAATGACTATCACAGTCAGTGGCTTTTCTCTTTTTCTGGAATTTTCAGAGCATACCAGAGATACACTCTCAAAAGATGGCATCTGTATTTTATAATGAATAACTTAAGTTTATTCTGCTGTGTCGATATGTATTC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1855667 373 +   3513951 atgttttg------atacatatattcattgtgaaataatcacatatttattaactcacattgtt---atttcctttttatttttgtggtgtgaacatttaagatcagctttctcagcaaatttcaggtatacagtgaagtatttta-------tccacattagtgtacaccagatctgcagaacttattcatcatatgtaactgaTGTTGGCCAAAGAG-ATGTGATAGTTCTTTGTCTCCTTTACCCCATCACCCAATGACTATCACAGTCAGTGGCTTTTCTCCTTTTCTGGAATTTTCGGAGCATTCCAGATGTACGCTCTCAAAAGATGGCATCTGTACTTTATAAGGAACAACTGAAGTTTATTTTGCTGTGTCGAAATGTATTC
i saiBol1.JH378271          C 0 I 162
s cebCap1.NW_016107730v1     1906801 377 +   1920343 atgttttg------atacatatattcattgtgaaataatcacatatttattaactcacatggttaccatttcctttttatttttgtggtgtgaacatttaagatcaactttttcagcaaatttcaggtatacagtaaagtatttta-------tccacgttaatatacaccagatctgcagaacttattcatcatatataactgaTGTTGGCCAAAGAGAATGTGATAGTTCTTTGTCTCCTTTACCCCATCACCCAATGACTATTACAGTCAGTGGTTTTTCTCTTTTTCTGGAATTTTCAGAGCATTCCAGATATACACTCTCAAAAGATGGCATCTGTATTTTATAAGGAATAACTTGAGTTTATTTTGCTATGTCGATATGTATTC
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7020733 377 -   7032639 atgttttg------atacatatattcactgtgaaataatcacatatttatttactcacatggttaccatttcctttttatttttgtggtgtgaatatttgagataaactttctcagcaaatttcaggtgtacagtaaagtgtttta-------tccacattagtgtacaccagatctgcagaagttattcatcgtatataactgaTGTTGGCCAAAGAGAATGTGATAGTTCTTTGTCTCCTTTACCCCATCACCCAATGACTATCACAGTCAGTGGCTTTTCTCTTTTTCTGGAATTTTCAGAGCATTCCAGATACACACTCTCAAAAGATGGCATCTGTATTTTATAAGGAATAACTTAAGTTTATTTTGCTGTGTCGATATGTATTC
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e canFam3.chr9              21504826 15840 +  61074082 I
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T

a score=90066.000000
s hg38.chr17_JH159148v1_alt    30042 10 +     88070 AGG---AGAAGAA
s panTro5.chr17             16341142 13 +  83181570 AGGAGAAGAAGAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16246022 13 +  83442489 AGGAGAAGAAGAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4092706 13 +   4267968 AGGAGAAGAAGAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2073049 13 -   2193130 AGGAGAAGAAGAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135483 13 -  77216781 AGGAGAAGAAGAA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28048310 13 -  80997621 AGGAGAAGAAGAA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104938 13 +  10377808 AGGAGAAGAAGAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990246 13 -   8458610 AGGAGAAGAAGAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934871 13 +  75148670 AGGAGAAGAAGAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174572 13 +   4244037 AGGAGAAGAAGAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197616 13 +   4569836 AGGAGAAGAAGAA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147043 10 - 159171411 AAGAGAAGAA---
i calJac3.chr5              C 0 T 386
s saiBol1.JH378271           1856202 10 +   3513951 aggagaagga---
i saiBol1.JH378271          I 162 C 0
s cebCap1.NW_016107730v1     1907178 10 +   1920343 aagagaagaa---
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7021110 10 -   7032639 aagagaagaa---
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e canFam3.chr9              21504826 15840 +  61074082 I
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T

a score=10500.000000
s hg38.chr17_JH159148v1_alt    30052 1 +     88070 G
s panTro5.chr17             16341155 1 +  83181570 G
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16246035 1 +  83442489 G
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4092719 1 +   4267968 G
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2073062 1 -   2193130 G
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135496 1 -  77216781 G
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28048323 1 -  80997621 G
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104951 1 +  10377808 G
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990259 1 -   8458610 G
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934884 1 +  75148670 G
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174585 1 +   4244037 G
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197629 1 +   4569836 G
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1856212 1 +   3513951 g
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907188 1 +   1920343 g
i cebCap1.NW_016107730v1    C 0 I 274
s aotNan1.NW_018502359v1     7021120 1 -   7032639 g
i aotNan1.NW_018502359v1    C 0 I 416
e mm10.chr11                22122012 4010 - 122082543 I
e canFam3.chr9              21504826 15840 +  61074082 I
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e calJac3.chr5              46147053 386 - 159171411 T

a score=87267.000000
s hg38.chr17_JH159148v1_alt    30053 30 +     88070 GAAGCCATATAAGAATGGAAATGTTATCTG
s panTro5.chr17             16341156 30 +  83181570 GAAGCCGTATAAGAATGGAAATGTTATCTG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16246036 30 +  83442489 GAAGCCGTATAAGAATGGAAATGTTATCTG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4092720 30 +   4267968 GAAGCCATATAAGAACGGAAATGTTATCTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2073063 30 -   2193130 GAAGCCATATAAGAATGGAAATCTTATCTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135497 18 -  77216781 GAGGCCATATAAGAATGG------------
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28048324 18 -  80997621 GAGGCCATATAAGAATGG------------
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104952 18 +  10377808 GAGGCCATATAAGAATGG------------
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990260 18 -   8458610 GAGGCCATATAAGAATGG------------
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934885 18 +  75148670 GAGGCCATATAAGAATGG------------
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174586 18 +   4244037 GAGGCCATATAAGAATGG------------
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197630 18 +   4569836 GAGGCCATATAAGAATGG------------
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1856213 23 +   3513951 gagg-------aggaggGAAGTGTTATCGG
i saiBol1.JH378271          C 0 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e aotNan1.NW_018502359v1     7021121 416 -   7032639 I
e cebCap1.NW_016107730v1     1907189 274 +   1920343 I
e canFam3.chr9              21504826 15840 +  61074082 I
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e calJac3.chr5              46147053 386 - 159171411 T

a score=2100.000000
s hg38.chr17_JH159148v1_alt    30083 1 +     88070 C
s panTro5.chr17             16341186 1 +  83181570 C
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16246066 1 +  83442489 C
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4092750 1 +   4267968 C
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2073093 1 -   2193130 C
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s saiBol1.JH378271           1856236 1 +   3513951 C
i saiBol1.JH378271          C 0 C 0
s canFam3.chr9              21520666 1 +  61074082 C
i canFam3.chr9              I 15840 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e aotNan1.NW_018502359v1     7021121 416 -   7032639 I
e cebCap1.NW_016107730v1     1907189 274 +   1920343 I
e manLeu1.NW_012106252v1     2174604 0 +   4244037 C
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e calJac3.chr5              46147053 386 - 159171411 T
e colAng1.NW_012122154v1     2197648 0 +   4569836 C
e chlSab2.chr16             64934903 0 +  75148670 C
e cerAty1.NW_012006043v1     1990278 0 -   8458610 C
e macNem1.NW_012014910v1     2104970 0 +  10377808 C
e macFas5.chr16             28048342 0 -  80997621 C
e rheMac8.chr16             30135515 0 -  77216781 C

a score=9555.000000
s hg38.chr17_JH159148v1_alt    30084 1 +     88070 A
s panTro5.chr17             16341187 1 +  83181570 A
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16246067 1 +  83442489 A
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4092751 1 +   4267968 A
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2073094 1 -   2193130 A
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135515 1 -  77216781 A
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28048342 1 -  80997621 A
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104970 1 +  10377808 A
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990278 1 -   8458610 A
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934903 1 +  75148670 A
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174604 1 +   4244037 A
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197648 1 +   4569836 A
i colAng1.NW_012122154v1    C 0 C 0
s cebCap1.NW_016107730v1     1907463 1 +   1920343 A
i cebCap1.NW_016107730v1    I 274 C 0
s aotNan1.NW_018502359v1     7021537 1 -   7032639 A
i aotNan1.NW_018502359v1    I 416 C 0
s canFam3.chr9              21520667 1 +  61074082 A
i canFam3.chr9              C 0 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e dasNov3.JH570468            471583 19088 -    852752 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e saiBol1.JH378271           1856237 0 +   3513951 C
e calJac3.chr5              46147053 386 - 159171411 T

a score=69958.000000
s hg38.chr17_JH159148v1_alt    30085 8 +     88070 AATGTTAC
s panTro5.chr17             16341188 8 +  83181570 AATGTTAC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16246068 8 +  83442489 AATGTTAC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4092752 8 +   4267968 AATGTTAC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2073095 8 -   2193130 AATGTTAC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135516 8 -  77216781 AATGTTAC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28048343 8 -  80997621 AACGTTAC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104971 8 +  10377808 AACGTTAC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990279 8 -   8458610 AACGTTAC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934904 8 +  75148670 AACGTTAC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174605 8 +   4244037 AACGTTAC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197649 8 +   4569836 AACGTTAC
i colAng1.NW_012122154v1    C 0 C 0
s cebCap1.NW_016107730v1     1907464 8 +   1920343 AATGTTAT
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7021538 8 -   7032639 AATGTTAT
i aotNan1.NW_018502359v1    C 0 C 0
s canFam3.chr9              21520668 8 +  61074082 GATGTTCC
i canFam3.chr9              C 0 T 41632
s dasNov3.JH570468            490671 8 -    852752 AGTATTAC
i dasNov3.JH570468          I 19088 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e saiBol1.JH378271           1856237 0 +   3513951 C
e calJac3.chr5              46147053 386 - 159171411 T

a score=269680.000000
s hg38.chr17_JH159148v1_alt    30093 27 +     88070 CTGCAAATACAGGAGATTACTCCTCCA
s panTro5.chr17             16341196 27 +  83181570 CTGCAAATACAGGAGATTACTCCTCCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16246076 27 +  83442489 CTGCAAATACAGGAGATTACTCCTCCA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4092760 27 +   4267968 CTGCAAATACAGGAGATTACTCCTCCA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2073103 27 -   2193130 CTGCAAATACAGGAGATTACTCCTCCA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135524 27 -  77216781 CTGCAAATACAGGAGATTATTCCTCCA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28048351 27 -  80997621 CTGCAAATACAGGAGATTATTCCTCCA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104979 27 +  10377808 CTGCAAATACAGGAGATTATTCCTCCA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990287 27 -   8458610 CTGCAAATACAGGAGATTATTCCTCCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934912 27 +  75148670 CTGCAAATACAGGAGATTATTCCTCCA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174613 27 +   4244037 CTGCAAATACAGGAGATTATTCCTCCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197657 27 +   4569836 CTGCAAATACAGGAGATTATTCCTCCA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1856237 23 +   3513951 ----AAATACAGGAGGTTATTCCTCTA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907472 27 +   1920343 CAGCAAATACAGGAGGTTATTCCTCTA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7021546 27 -   7032639 CTGCAAATACAGGAGGTTATTCCTCTA
i aotNan1.NW_018502359v1    C 0 C 0
s canFam3.chr9              39589773 27 -  61074082 CTGCATATATGAGGGATTGTTTCTTCC
i canFam3.chr9              T 444 I 2
s dasNov3.JH570468            490679 27 -    852752 CTGAATATCCGCGGGATAGTACCTCCC
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e otoGar3.GL873537          22902002 34606 +  28711273 T
e calJac3.chr5              46147053 386 - 159171411 T

a score=610116.000000
s hg38.chr17_JH159148v1_alt    30120 72 +     88070 --TTGTTGAG--TCAACTTAAGT-GCATGTCTTGCGAATGTAGAGTC-C-C-AAT-GTAATTTTTACTT-TAATGAGAGTTA
s panTro5.chr17             16341223 72 +  83181570 --TTGTTAAG--TCAACTTAAGT-GCATGTCTTGCTAATGTAGAGTC-C-C-AAT-GTAATTTTTACTT-TAATGAGAGTTA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16246103 72 +  83442489 --TTGTTAAG--TCAACTTAAGT-GCATGTCTTGCTAATGTAGAGTC-C-C-AAT-GTAATTTTTACTT-TAATGAGAGTTA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4092787 72 +   4267968 --TTGTTAAG--TCAACTGAAGT-GCATGTCTTGCTAATGTAGAGTC-C-C-AAT-GTAATTTTTACTT-TAATGAGAGTTA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2073130 72 -   2193130 --TTGTTAAG--TCAACTTAAGT-GCATGTCTTGCTAATGCAGAGTC-C-C-AAT-GTAATTTTTACTT-TAATGAGAGTTA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135551 72 -  77216781 --TTGTTAAG--TCACCTTAAGT-GCATGTCTTGCTAGTGCTGAGTC-C-C-AAT-GTAATTTTTATTT-TAATGAGAGTTA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28048378 72 -  80997621 --TTGTTAAG--TCACCTTAAGT-GCATGTCTTGCTAGTGCTGAGTC-C-C-AAT-GTAATTTTTATTT-TAATGAGAGTTA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2105006 72 +  10377808 --TTGTTAAG--TCACCTTAAGT-GCATGTCTTGCTAGTGCTGAGTC-C-C-AAT-GTAATTTTTATTT-TAATGAGAGTTA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990314 72 -   8458610 --TTGTTAAG--TCACCTTAAGT-GCATGTCTTGCTAGTGCTGAGTC-C-C-AAT-GTAATTTTTATTT-TAATGAGAGTTA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934939 72 +  75148670 --TTGTTAAG--TCACCTTAAGT-GCATGTCTTGCTAATGCTGAGTT-C-C-AAT-GTAATTTTTATTT-TAATGAGAGTTA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174640 72 +   4244037 --TTGTTAAG--TCACCTTAAGT-GCATGTCTTGCTAATGCTGAGTC-C-C-AAT-GTAATTTTTATTT-TAATGAGAGTTA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197684 72 +   4569836 --TTGTTAAG--TCACCTTAAGT-GCATGTCTTGCTAATGCTGAGTC-C-C-AGT-GTAATTTGTATTT-TAATGAGAGTTA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1856260 70 +   3513951 --TTGATGAG--TAAAATTAAGT-GCATGTCTTGCTAATGCTGAGTC-C-C-AGT-GTAATTCTTACTT-TATT--GAGTTA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907499 70 +   1920343 --TTGATGAG--TAAAATTAAGT-GCATGTCTTGCTAATGCTGAGTC-C-C-AAT-GTAATTTTTACTT-TATT--GAGTTA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7021573 70 -   7032639 --TTAATGAG--TAAAATTAAGT-GCATGTCTTGCTAATGCTGAGTC-C-C-AAT-GTAATTTTTACTT-CATT--GAGTTA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22867396 74 +  28711273 --ttgttgtt--gTTGCTCAAGT-GCACAGCTCACCAGTTCTCATTCTC-C-AGTAGCAGTTCTAGTTG-CTTTGAGATGGA
i otoGar3.GL873537          T 34606 C 0
s canFam3.chr9              39589802 76 -  61074082 --TTGTAAAGAATAAATACATTT-GCATAGCTTACTAGTGTTCAGTA-C-TAAAT-ATTATTGCTACTTCTATTGACATGTC
i canFam3.chr9              I 2 T 2534
s dasNov3.JH570468            490706 77 -    852752 TTTTTAAAAA--TGATGTTCAGTAGTGCATCTTGCTAACACTTGGTC-TGC-AGC-ATCATTTCTACTTACACTGAGGTGGA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e calJac3.chr5              46147053 386 - 159171411 T

a score=1254868.000000
s hg38.chr17_JH159148v1_alt    30192 139 +     88070 AATATAAGTGCTCTTGGACAGAAAGAGAAGACCCAACCTTAAATCTGAGTCTG--CA-TTTTTAGCTAAATAACATCACACATTAAAATTTTCCTCAGCTG--GAAAGTAGAGGTAATAAAACATGACCATCTGTTTTTATAAT
s panTro5.chr17             16341295 140 +  83181570 AATGTAAGTGCTCTTGGACAGAAAGAGAAGACCCAACCTTAAATCTGAGTCTG--CATTTTTTAGCTAAATAACATCACATATTAAAATtttcctcagctg--gaaagtagaggtaataaaacatgaccgtctgtttttataat
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16246175 140 +  83442489 AATGTAAGTGCTCTTGGACAGAAAGAGAAGACCCAACCTTAAATCTGAGTCTG--CATTTTTTAGCTAAATAACATCACATATTAAAATtttcctcagctg--gaaagtagaggtaataaaacatgaccgtctgtttttataat
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4092859 139 +   4267968 AATATAAGTGCTCTTGGACAGAAAGAGAAGACCCAACCTTAAATCTGAGTCTG--CA-TTTTTAGCTAAATAACATCACAGGTTAAAATTTTCCTCAGCTG--GAAAGTAGAGGTAATAAAACATGACCGTCTGTTTTTATAAT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2073202 139 -   2193130 AATATAAGTGCTCTTGGACAGAAAGAGAAGACCCTACCTTAAATCTGAGTCTG--CA-TTTTTAGCTAAATAACATCACACGTTAAAATTTTCCTCAGCTG--GGAAGTGGAGGTAATAAAACATGACGGTCTGTTTTTATAAT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135623 138 -  77216781 CATGTAAGTGCTCTTGAACAGAAAGAGAAGACCCAACCTTGAATCTGAGTCTGTCCA-TTTTTAGCTAAATAACATCACACATTAAAATTTT-CTCAGCTG--GAAAGTGGAGGTAATAAAACATGA--GTCTGTTTTCAGAAT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28048450 140 -  80997621 CATGTAAGTGCTCTTGAACAGAAAGAGAAGACCCAACCTTGAATCTGAGTCTGTCCA-TTTTTAGCTAAATAACATCACACATTAAaatttt-ctcagctg--gaaagtggaggtaataaaacatgactgtctgttttcagaat
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2105078 140 +  10377808 CATGTAAGTGCTCTTGAACAGAAAGAgaagacccaaccttgaatctgagtctgtcca-tttttagctaaataacatcacacattaaaatttt-ctcagctg--gaaagtggaggtaataaaacatgactgtctgttttcagaat
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990386 140 -   8458610 CATGTAAGTGCTCTTGGACAGAAAGAGAAGACCCAACCTTGAATCTGAGTCTGTCCA-TTTTTAGCTAAATAACATCACACGTTAAaatttt-ctcagctg--gaaagtggaggtaataaaacatgactgtctgttttcagaat
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64935011 140 +  75148670 CATGTAAGTGCTCTTGGACAGAAAGAGAAGACCCAACCTTGAATCTGAGTCTGTCCA-TTTGTAGCTAAATAACATCACACATTAAACTTTT-CTCAGCTG--GAAAGTGGAGGTAATAAAACATGACTGTCTGTTTTCAGAAT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174712 140 +   4244037 CATGTAAGTGCTCTTGGACAGAAAGAGAAGACCCAACCTTGAATCTGAGTCTGTCCA-TTTTTAGCTAAATAACATCACACGTTAAaatttt-ctcagctg--gaaagtggaaataataaaacatgactgtctgttttcagaat
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197756 140 +   4569836 CATGTAAGTGCTCTTGGACAGGAAGAGAAGACCCAACCTTGAATCTGAGTCTGTCCA-TTTGTAGCTTAATAACATCGCACATTAAaatttt-ctcagctg--gaaagtggaggtaataaaacatgactgtctgttttcagaat
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1856330 136 +   3513951 AATGTAAGTGCCCTTAGACAGAAAGAGAGGACCACACCTTGCGTCTGAGTCTGTCCA-TTATTAGCTAAATAACATCACACATTAAGATTTT-CTCAGCTG--GAAAGTAAAGGTAATAAAAC----CTGACTGTTTTGATAAT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907569 140 +   1920343 AATGTAAGTGCCCTTGGACAGAAAGAGAGGACGACACCTTGCATCTGAGTCTGTCCA-TTATTAGCTAAATAACATCACGCATTAAAATTTT-CTCAGCTG--GAAAGTAAAGGTAATAAAACATGACTGTCTGTTTTGATAAT
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7021643 140 -   7032639 AATGTAAGTGCCCTTGGACAGAAAGATAGGACCATACCTTGCATCTGAGTCTGTCCA-TTATTAGGTAAATAACATCACACATTAAAATTTT-CTCAGCTG--GAAAGTAAAGGTAATAAAACATGACTGTCTGTTTTTGTAAT
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22867470 142 +  28711273 CATGCAGGTGCCCTTGAGCAGACACCGCAGACCCAGTCCTGGATGTCAGTGTGACTA-TTATTCACTACAAGACATTATGCTATGAAGTTTT-CTCATCTGAAAAAAATGATATTAACAATACAAGGGTAACTGTATTGAAAAG
i otoGar3.GL873537          C 0 T 13972
s canFam3.chr9              21479044 134 +  61074082 AATGTGAGTGCCCTTTAGCCAGGGCAGAAGATGCAGCCTGGCATCCGATTCTGTCC--CTTTCAGCTCTGTGACATAACATTATAGGATCTC-CTCACCTG--CAAA-TGGAGATACAAATTTGTGGGGGACTAT----AGGAG
i canFam3.chr9              T 41632 I 3
s dasNov3.JH570468            490783 136 -    852752 AGTGTAGGAGACCTCCACCAGAGCCAGAAGACCCAGTTCTGGACCTGAGTTTGTGCA-TTTCTACAGACATGACTTTGCACAAGTCAATTTT-CAAATCTG---AATGGAGAGGCAGTA---TTTACTGGGTTGTTTTTATGAG
i dasNov3.JH570468          C 0 I 1
e mm10.chr11                22122012 4010 - 122082543 I
e calJac3.chr5              46147053 386 - 159171411 T

a score=109609.000000
s hg38.chr17_JH159148v1_alt    30331 11 +     88070 --CAAATTAGG-TA
s panTro5.chr17             16341435 11 +  83181570 --caaattagg-ta
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16246315 11 +  83442489 --caaattagg-ta
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4092998 11 +   4267968 --CAAATTAGG-TA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2073341 11 -   2193130 --CAAATTAGG-TA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135761 11 -  77216781 --CAAATTAGG-TA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28048590 11 -  80997621 --caaattagg-ta
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2105218 11 +  10377808 --caaattagg-ta
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990526 11 -   8458610 --caaattagg-ta
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64935151 11 +  75148670 --CAAATTAGG-TA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174852 11 +   4244037 --caaattagg-ta
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197896 11 +   4569836 --caaattagg-ta
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1856466 12 +   3513951 --CAAATTAGGTTA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907709 11 +   1920343 --CAAATTAGG-TA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7021783 11 -   7032639 --CAAATTAGG-TA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22853640 11 +  28711273 --CAGAATAGA-TA
i otoGar3.GL873537          T 13972 C 0
s canFam3.chr9              21479181 11 +  61074082 --CCAAATGGA-TA
i canFam3.chr9              I 3 C 0
s dasNov3.JH570468            490920 11 -    852752 CAGAGAATAGA---
i dasNov3.JH570468          I 1 C 0
e mm10.chr11                22122012 4010 - 122082543 I
e calJac3.chr5              46147053 386 - 159171411 T

a score=4131413.000000
s hg38.chr17_JH159148v1_alt    30342 494 +     88070 ACATGTATGGTATGGAATATGTGTGTAAATCCC-ATATCAGGAATG---------CTGTAAAATA-----------AA---AAAAAA--CA----CCATGTGA--GATGAAGGACAGCTTTGAGTTTATTAAGAAA----CATATAGGTAAGA----------GTCCCTGTTTCTAGGGAGATAACCCAAAATGATCATGAAAGGAATAA----GGATAAAAGAACCACGAG-----------------GAGGACACTGAA------AATGAAAACATGATTGTGAAG----------------ATTATTGA-------TCAGTTGCAAAA-------------------------------CCTAAGTTT------------CTTAGAGAAAGGGAATGAAGCTCTTGACTTTAGAGT-CAAGCTGAGACCATGACTCCAAATTGAAAATACATGAAGG-----------TGGCACAT-GATCCACAAGGTGTAAGGAAAAA-AGAATCAGGATGAAGTACTCTACCCTCACTCAAGCTG-ATTCACAAAA--TGTTAAACATGCAGAGAAGTCATAAAAATTAGGGTG--AGCAAAGTTCACCCTAAGTTCACTTTGTTGGTTTTCATCACAGTTTGAAAGTAAATTTGT
s panTro5.chr17             16341446 495 +  83181570 acatgtatgGTATGCAATATGTGTGTAAATCCC-ATATCAGGAATG---------CTGTAAAATA-----------AA---AAAAAA-CCA----CCATGTGA--GATGAAGGACAGCTTTCAGTTTATTAAGAAA----CATATAGGTAAGA----------GTCCCTGTTTCTAGGGAGATAACCCAAAATGATCATGAAAGGAATAA----GGATAAAAGAACCATGAG-----------------GAGGACACTGAA------AATGAAAACATGATTGTGAAG----------------ACTATTGA-------TCAGTTGCAAAA-------------------------------CCTAAGTTT------------CTTAGAGAAAGAGAATGAAGCTCTTGACTTTAGAGT-CAAGCTGAGACCATGACTCCAAATTGAAAATACAGGAAGG-----------TGGCACAG-GATCTACAAGGTGTAAGGAAAAA-AGAATCAGGATGAAGTACTCTACCCTCACTCAAGCTG-ATTTACAAAA--TGTTAAACATGCAGAGAAGTCATAAAAATTAGGGTG--AGCAAAGTTCACCCTAAGTTCACTTCGTTGGTTTTCATCACAGTTTGAAAGTAAATTTGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16246326 494 +  83442489 acatgtatgGTATGCAATATGTGTGTAAATCCC-ATATCAGGAATG---------CTGTAAAATA-----------AA---AAAAAC--CA----CCATGTGA--GATGAAGGACAGCTTTCAGTTTATTAAGAAA----CATATAGGTAAGA----------GTCCCTGTTTCTAGGGAGATAACCCAAAATGATCATGAAAGGAATAA----GGATAAAAGAACCATGAG-----------------GAGGACACTGAA------AATGAAAACATGATTGTGAAG----------------ACTATTGA-------TCAGTTGCAAAA-------------------------------CCTAAGTTT------------CTTAGAGAAAGAGAATGAAGCTCTTGACTTTAGAGT-CAAGCTGAGACCATGACTCCAAATTGAAAATACAGGAAGG-----------TGGCACAG-GATCTACAAGGTGTAAGGAAAAA-AGAATCAGGATGAAGTACTCTACCCTCACTCAAGCTG-ATTTACAAAA--TGTTAAACATGCAGAGAAGTCATAAAAATTAGGGTG--AGCAAAGTTCACCCTAAGTTCACTTCGTTGGTTTTCATCACAGTTTGAAAGTAAATTTGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4093009 494 +   4267968 ACATGTATGGTATGCAATATGTGTGTAAATCGC-ATATCAGGAATG---------CTGTAAAATA-----------AA---AAAAAC--CA----CCATGTGG--GATGAAGGACAGCTTTGAGTTTATTAAGAAA----CATATAGGTAAGA----------GTCCCTGTTTCTAGGGAGATAACCCAAAATGATCATGAAAGGAATAA----GGATAAAAGAACCACGAG-----------------GAGGACACTGAA------AATGAAAACATGATTGTGAAG----------------ACTATTGA-------TCAGTTGCAAAA-------------------------------CCTAAGTTT------------CTTAGAGAAAGAGAATGAAGCTCTTGACTTTAGAGT-CAAGCTGAGACCATGACTCCAAATTGAAAATACATGAAGG-----------TGGCACAG-GATCCACAAGGTGTAAGGAAAAA-AGAATCAGGATGAAGTACTCTACCCTCACTCAAGCTG-ATTTACAAAA--TGTTAAACATGCAGAGAAGTCATAAAAATTAGGGTG--AGCAAAGGTCACCCTAAGTTCACTTCGTTGGTTTTCATCACAGTTTGAAAGTAAATTTGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2073352 496 -   2193130 ACACGTATGGTATGAAACATGTGTGTAAATCCC-ATATCAGGAATG---------CCCTAAAATA-----------AA---AAAAAA-CCA----CCATGTGA--GATGAAGGACAGTTTTGAGTTTATTAAGAAA----CATATAGGTAAGA----------GTCCCTGTTTCTAAGGAGATAACCCAAAATGATCATGAAAGGAATAA----GGATAAAAGAACCACAAG-----------------GAGGACATTGAA------AATGAAAACATGATTGTGAAG----------------ATTATTGA-------TCAGTTGCAAAA-------------------------------CCTAAGTTT------------CTTAGAGAAACAGAACGAAGCTGTTGACTTTAGAGT-CAAGTTGAGACCATGACTCCAAATTGAAAATACATGAAGG-----------TGGCACAT-GATCTGCAAAGTGTAAAGAAAAAGAGAATCAGGATGAAGTACTCTACTCTCACTCAAGCTG-ATTCACAAGA--TGTCAAACATGCAGAGAAGTCATAAAAATTAGGGTG--AGCAAAGTTCACCCTAAGTTCACTTTGTTGGTTGTCATCACAGTTTGAAAGTAAATTTGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135772 494 -  77216781 ACATGTATGGTATGCAATATGTGTGTAAATCCC-ATATCAGGAATG---------CTGTAAAATT----------AAA---AAAAAA--------ACATGTGA--GATGCAGGACAGTTTTGAGTTTATTAAGAAA----CATAAAGGTAAGA----------GTCCCTGTTTCTAGGGAGATAACCCAAAATGATCATGAAAGGAATAA----GGATACAAGAACCATGGG-----------------GAGGACATTGAA------AATGAAAACATGACTGTGAAG----------------ACTATTGA-------TCAGTTGCAAAA-------------------------------CCTAAGTTT------------CTTAGGGAAACAGAATGAAGCTCTTGACTTTAGAGT-CAAGTTGAGACCATGACTCCAAATTGAAAATACATAAAGG-----------TGGCACAT-GATCCACAAGGTGTAAAGAAAAAGAGAATCAGGATGAAGTACTCTACCCTCACTTAAGCTG-ATTCACAAAG--TGTTAAACATGCAGAGAAGTCACAAAAATTAGGGTG--AGCAAGGTTCACCCTAAGTTCACTTTGTTGGTTGTCATCGAAGTTTGAAAGTAAATTTGT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28048601 493 -  80997621 acatgtaTGGTATGCAATATGTGTGTAAATCCC-ATATCAGGAATG---------CTGTAAAATT-----------AA---AAAAAA--------ACATGTGA--GATGCAGGACAGTTTTGAGTTTATTAAGAAA----CATAAAGGTAAGA----------GTCCCTGTTTCTAGGGAGATAACCCAAAATGATCATGAAAGGAATAA----GGATACAAGAACCATGGG-----------------GAGGACATTGAA------AATGAAAACATGACTGTGAAG----------------ACTATTGA-------TCAGTTGCAAAA-------------------------------CCTAAGTTT------------CTTAGAGAAACAGAATGAAGCTCTTGACTTTAGAGT-CAAGTTGAGACCATGACTCCAAATTGAAAATACATAAAGG-----------TGGCACAT-GATCCACAAGGTGTAAAGAAAAAGAGAATCAGGATGAAGTACTCTACCCTCACTTAAGCTG-ATTCACAAAG--TGTTAAACATGCAGAGAAGTCACAAAAATTAGGGTG--AGCAAGGTTCACCCTAAGTTCACTTTGTTGGTTGTCATCGAAGTTTGAAAGTAAATTTGT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2105229 494 +  10377808 acatgtatgGTATGCAATATGTGTGTAAATCCC-ATATCAGGAATG---------CTGTAAAATT----------AAA---AAAAAA--------ACATGTGA--GATGCAGGACAGTTTTGAGTTTATTAAGAAA----CATAAAGGTAAGA----------GTCCCTGTTTCTAGGGAGATAACCCAAAATGATCATGGAAGGAATAA----GGATACAAGAACCATGGG-----------------GAGGACATTGAA------AATGAAAACATGACTGTGAAG----------------ACTATTGA-------TCAGTTGCAAAA-------------------------------CCTAAGTTT------------CTTAGAGAAACAGAATGAAGCTCTTGACTTTAGAGT-CAAGTTGAGACCATGACTCCAAATTGAAAATACATAAAGG-----------TGGCACAT-GATCCACAAGGTGTAAAGAAAAAGAGAATCAGAATGAAGTACTCTACCCTCACTTAAGCTG-ATTCACAAAG--TGTTAAACATGCAGAGAAGTCACAAAAATTAGGGTG--AGCAAGGTTCACCCTAAGTTCACTTTGTTGGTTGTCATCGAAGTTTGAAAGTAAATTTGT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990537 493 -   8458610 acatgtaTGGTGTGCAATATGTGTGTAAATCCC-ATATCAGGAATG---------CTGTAAAATA-----------AA---AAAAAA--------CCATGTGA--GATGCAGGACAGTTTTGAGTTTATTAAGAAA----CATAAAGGTAAGA----------GTCCCTGTTTCTAGGGCGATAACCCAAAATGATCATGAAAGGAATAA----GGATACAAGAACCATGGG-----------------GAGGACATTGAA------AATGAAAACATGACTGTGAAG----------------ACTATTGA-------TCAGTTGCAAAA-------------------------------CCTAAGTTT------------CTTAGAGAAACAGAATGAAGCTCTTGACTTTAGAGT-CAAGTTGAGACCATGACTCCAAATTGAAAATACATAAAGG-----------TGGCACAT-GATCCACAAGGTGTAAAGAAAAAGAGAATCAGGATGAAGTACTCTACCCTCGCTTAAGCTG-ATTCACAAAG--TGTTAAACATGCAGAGAAGTCACAAAAATTAGGGTG--AGCAAAGTTCACCCTAAGTTCACTTTGTTGGTTGTCATCGAAGTTTGAAAGTAAATTTGT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64935162 493 +  75148670 ACATGTACGATATGCAATACGTGTGTAAATCTC-ATATCAGGAATG---------CTGTAAAATA-----------AA---AAAAAA--------ACATGTGA--GATGCAGGACAGTTTTGAGTTTATTAAGAAA----CATAAAGGTAAGA----------GTCCCTGTTTCTAGGGAGATAACCCTAAATGATCATGAAAGGAATAA----GGATATAAGAACCATGGG-----------------GAGGACATTGAA------AATGAAAACATGACTGTGAAG----------------ACCATTGA-------TCAGTTGCAAAA-------------------------------CCTAAGTTT------------CTTAGAGAAACAGAATGAAACTCTTGACTTTAGAGT-CAAGTTGAGACCATGACTCCAAATTGAAAATACAGGAAGG-----------TGGCACAT-GATCCACAAGGTGTAAAGAAAAAGAGAATCAGGATGAAGTACTCTACCCTCGCTTAAGCTG-ATTCACAAAG--TGTTAAACATGCGGAGAAGTCACAAAAATTAGGGTG--AGCAAAGTTCACCCTAAGTTCACTTTGTTGATTGTCATCGAAGTTTGAAAGTAAATTTGT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174863 493 +   4244037 acatgtaTGGTATGCAATATGTGTGTAAATCCC-ATATCAGGAATG---------CTGTAAAATT-----------TA---AAAAAA--------ACATGTGA--GATGCAAGACAGTTTTGAGTTTATTAAGAAA----CACAAAGGTAAGA----------GTCCCTGTTTCTAGGGAGATAACCCAAAATGATCATGAAAGGAATAA----GGATACAAGAACCATGGG-----------------GAGGACATTGAA------AATGAAAACATGACTGTGAAG----------------ACTATTGA-------TCAGTTGCAAAA-------------------------------CCTAAGTTT------------CTTAGAGAAACAGAATGAAGCTCTTGACTTTAGAGT-CAAGGTGAGACCATGACTCCAAATTGAAAATACATAAAGG-----------TGGCACAT-GATCCACAAGGTGTAAAGAAAAAGAGAATCAGGATGAAGTACTCTACCCTTGCTTAAGCTG-ATTCACAAAG--TGTTAAACATGCAGAGAAGTCACAAAAATTAGGGTG--AGCAAAGTTCACCCTAAGTTCACTTTTTTGGTTGTCATCGAAGTTTGAAAGTAAATTTGT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197907 495 +   4569836 acatgtaTGGTATGCAATATGTGTGTAAATCCC-ATATCAAGAATG---------CTGTAAAATA---------AAAA---AAAAAA--------ACATGTGA--GATGCAGGATAGTTTTGAGTTTATTAAGAAA----CATAAAGGTAAGA----------GTCCCCATTTCTAGGGAGATAATCCAAAATGATCATGAAAGGAATAA----GGATACAAAAACCATGGG-----------------GAGGACATTGAA------AATGAAAACATGACTGTGAAG----------------ACTATTGA-------TCAGTTGCAAAA-------------------------------CCTAAGTTT------------CTTAGAGAAACAGAATGAAGCTCTTGACTTTGGAGT-CAAGTTGAGACCACGACTCCAAATTGAAAATACATGAAGG-----------TGGCACAT-GATCCACAAGGTGTAAAGAAAAAGAGAATCAGGATGAAGTACTCTACCCTTGCTTAAGCTG-ATTCACAAAA--TGTTAAACATGCAGAGAAGTCACAAAAATTAGGGTG--AGCAAAGTTCACCCTAAGTTCACTTTGTTGGTTGTCATCGAAGTTTGAAAGTAAATTTGT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1856478 475 +   3513951 ACATATATGATACACAATATGTGTGTTAACCCC-TTATCAGGAATG---------CTGTAAAATA-----------AATTTAAAAACCCCAT---CTATGTCA--GATGAAGAATGGTTTTGAGTTTATTAAGAGA----TATATAGGCAAAA----------ATCCCTGTTTCTAGGGAGATAACCAAAAGTGATCATGAAAAGAAGG-------ATACAAGAACCATGAG-----------------GAGGACACTGAA------AATGAAAAA--GACTGTGAAG----------------ATTATTGA-------TCACTTGCAAAA-------------------------------ACTGAGTTT------------CTTAGAGAAAGAGAATGAAGCTCTTGATTTTAGAGT-CAAGCTGAGATCATGACTCCAAATTGAAAATACATGAAGC-----------TAGCACAT-GATCCACAAAGTGTAAAGAAAGAGAGAATCAGGCTGAAATATTCTGCCCTCACTCAAGCTG-ATTCTTAAGA--TGTTAAATATGCAGAGAAGTCATAAAAATTAGAGCG--ACCA---------------------TGCTGGTTGTCAGCAAAGTTTGAAAGGAAATTTGT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907720 477 +   1920343 ACATATATGGTACACAATATGTGTGTTAACCCC-CTATCAGGAATG---------CTGTAAAATA-----------AATTAAAAAACCCCA----CAATGTAA--GATAAAGAATGGCTTTGAGTTTATTAAGATA----TATATAGGCAAAA----------ATCCCTGTTTCTAGGGAGATAACCAAAAGAAATCATGAAAAGAAGAA----GTATACAAGAGCCATGAG-----------------GAGGACATTGAA------AATGTAAAA--GACTGTGAAG----------------ATTATTGA-------TCACTTACAAAA-------------------------------ACTAAGTTT------------CTTAGAGAAAGAGAATGAAGCTTTTGATTTTAGAGT-CAAGCTGAGACCACGACTCCAAATTGAAAATACATGAAGC-----------TAGCTCAT-GGTCCAAAAAGTGTAAAGAAAGAGAGAATCAGGCTGAAGTAATCTGCCCTCAATCAAGCTC-ACTCAGAAAA--TTTTAAACATGCAGAGAAGTCATAAAAATTAGAGTG--AACA---------------------TGCTGGTTGTCAGCAAAGTTTGAAAGGAAATTTGT
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7021794 479 -   7032639 ACATATATGGTACACAATATGTGTGTAAATCCC-CTATCAGGAATG---------CTGTAAAATA-----------AATTTAAAAACCCCACTCACTATGTAA--GATGAAGAATGGTTTTGAGTTTATTAAGAAA----TATATAGGCAAAA----------ATCCCTGTTTCTAGGGAGATAAACGAAAGTGATCATGAAAAGAAGAA----GGATACAAGAGCCATGAG-----------------GAGGACATTGAA------AATG--AAA--GACTGTGAAG----------------ATTATTGA-------TCACTTGCAGAA-------------------------------ACTAAGTTT------------CTTAGAGAAAGAGAATGAAGCTCTTGATTTTAGAGT-CAAGCTGAGACCATGACTCCAAATTGAAAATACATGAAGC-----------TAGCACAT-GACCCACAAACTGTAAAGACAGAGAGAATCAGGCTGAAGTATTCTGCCCTCACTCAAGCTG-ATTTATAAGA--TGTTAAACATGCAGAGAAGTCATAAAAATTAGGGTG--AACG---------------------TGCTGGTTGTCAGCAAAGTTTGAAAGTAAATTTGT
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22853651 498 +  28711273 ATAATCATGAAATAAAATATGAACAGAAGGCCT--TATAAGTAA-------------ATGAAATACCCCCCCCCCAAA---AAAAAA-TCA----CAGTAAAG--GCTGGAAGATAGCAAAGACTTTATTGGGAAGGCATCATGGAAGCTGCA--------------------CTGGGAAAAAAATGCAAAGTGATCATGAAAAGAAAAAAGTCAGACAGAAGAATAGTAAGTCTATTACAAAAATTATGATTATAATGAAATGGTTAATGTGGAAAAGCCTGTGAAA----------------GCAATTAT-------AAAGATTTCTAT-------------------------------TTTAGGTTA------------GTTAGAG----GGAATGTGATAATCAGTTTTCCA----AGGCTGGGACAATGGCAATAAGTCAAGGAGACTCAAAGAAGAGCTGCACCTGTCACAGAGCTCAACAGCAAATACAGACACAGAAGGTCAGGGCGAAGTCAGCTGCTTCTCACCAAGCCA-AATCACAAAGCCTGTTAATCA-----AGAAACTGAGAGAAAGATGGTGGCAGCA---------------------TGCTGGATGTCAGT--------AAAGTGGGCTTGT
i otoGar3.GL873537          C 0 I 18
s mm10.chr11                22126022 450 - 122082543 acatgtgaga-atgggttgcacatgtagatctt-ctatca--aatggctttaccTCGGAATAGTA-----------AA---GACAGA--------CAATATGG--GATGGAATATGGT----ACATAATTAAGAAT--------TTGTCAAGG----------CTCCCTACGTTTTCTGAGAGAGC---GGCTTCTCAGGAAGAAGAAAG----TAGCATAAGA---CTATG-----------------GAGTGCACTGTA------GAATGAAGTGTGATTAGAAAGTGCATGAAGCTAAGGCATTATAGT-------GAATTTGC-TCT-------------------------------CCTAAGTTA------------TTTAGAG-GATGGGGTAAAGACCTTGGCATAGCATT-GAAGCTTAAGTGA-GACTTCTGCATGAGACGGCATGGGAG-----------CTGCAATC-G-----CAGGAAGTGAATGAAAG------------CAAGAACTCTGGATTCACTTAAGGAA-ATT---AAGG--T------------------TTAAAAAAATGATGATT--AACAATTTT---TTTGGTGTTAGCCTAATGGCTTTTAGCAC-------AAGTAAGTGTGT
i mm10.chr11                I 4010 C 0
s canFam3.chr9              21479192 470 +  61074082 ATGCACATAGTATGGGACCC-TGTGCATACATT-TTGTCATGAATG---------TTGAACAAGG-----------AC---ATGGAC---A----CCATATGG--GATGCAGAATGGTACAGGGTTTATTAAGAGA------TATAGGTGAGACCCTCCCCCCACCACTGCATGGAGGGAGGCC-TTTGAAAGGTTCATGCAAGGATGAAAAGAGGATACAAGGACTGTGAG-----------------GAA-----TGGA------ATAGAAAACTTGATCCTAAACTTTC------------ATTAGTGTCAGATACTTATCTATGATG-------------------------------CATGAATTTTTTTCTCTACACCTTAGTGGGATGGAAGTGAGATCTGCACTGTGTTGT-ATTGCAGATATGATGAATCCATA-TAACTATATAGGAAGC-----------TGGCACAT-GATTTACAGAC----AGAAAGAACAGACTCAGTGAGAAGGGACATATATTTCATAAAGGTA-CTTCACATTC--TTTGGAATAGCCTAATGAGTCTTAAACATTACAGTG--A-------------------------------------------TTGGAAATGGGT----
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            490931 505 -    852752 AAATGCTT---ATGGGATATGTATATAAATCCCTATATCAGGAAGG---------CTGTACAACA-----------AA---AAGAAA--------ACATGATATGGATGAATAATTGCATACAGTTTATTGAGAGA----CATGTAGGAAAGA----------CTCCTTCCATCTAGAGAGGCAACTCAAACTGATCATAAAAAGAAAAGAGGAAGATGCAGGAATCATGGA--------------------TATATTTTA------AAT-AAAATGTGATTGTGAAG----------------ATTACGGA-------TCAATTAAAGAAATCTATGAAAAGAGTTATGAGCACTTGTTTGCTTAAGTTA------------CATGGAGATAGTAGTTGAATTGCTTGTCATCAGACTGAAAGCTGGGGACATTCAGTCATGGTGTGAATAAAAGAAG------------TAGAACAT-GATCCAGAAGATATAAGGGAGAAGCAAATAAGGATGAAATAGTCAGCATTCCGTCAAGGTGAATTCAGTAGC--TTTTGTACATGCAGATGAATAACTC-CATTTTGCTG--A-------------------CAGTATGCTGTATGTTAGTAAAGTCTAGGAAGTGATTTGT
i dasNov3.JH570468          C 0 C 0
e calJac3.chr5              46147053 386 - 159171411 T

a score=25859.000000
s hg38.chr17_JH159148v1_alt    30836  9 +     88070 CCCCCAG----AA--
s panTro5.chr17             16341941  9 +  83181570 CCCCCAG----AA--
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16246820  9 +  83442489 CCCCCAG----AA--
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4093503  9 +   4267968 CCCCCAG----AA--
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2073848  9 -   2193130 CCCCCAA----AA--
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136266  9 -  77216781 CCTCTAA----AA--
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28049094  9 -  80997621 CCTCTAA----AA--
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2105723  9 +  10377808 CCTCTAA----AA--
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991030  9 -   8458610 CCTCTAA----AA--
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64935655  9 +  75148670 CCTCCAA----AA--
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2175356  9 +   4244037 CCTCTAA----AA--
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198402  9 +   4569836 CCTCCAA----AA--
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1856953 13 +   3513951 CCTCCAAGTGAAG--
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1908197 13 +   1920343 CCTCCAAGTGGAG--
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7022273 13 -   7032639 CCTCCAAGTGGAG--
i aotNan1.NW_018502359v1    C 0 C 0
s mm10.chr11                22126472  3 - 122082543 ---TTA---------
i mm10.chr11                C 0 C 0
s canFam3.chr9              21479662  2 +  61074082 -----------GA--
i canFam3.chr9              C 0 I 1
s dasNov3.JH570468            491436  9 -    852752 --CCCAG----GAGG
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22854149 18 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T

a score=403848.000000
s hg38.chr17_JH159148v1_alt    30845 53 +     88070 GGTAAATCTTTTGCCAGAGGGTTAC-TGTATGGGGA-TGATGGTCCTCTGCGGAA
s panTro5.chr17             16341950 53 +  83181570 GATAAATCCGTTGCCAGAGGGTTAC-TGTATGGGGA-TGATGGTCCTCTGCAGAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16246829 53 +  83442489 GATAAATCTGTTGCCAGAGGGTTAC-TGTATGGGGA-TGATGGTCCTCTGCAGAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4093512 53 +   4267968 GATAAATCTGTTGCCAGAGGGTTAC-TGTATGGGGA-TGATGGTCCTCTGCAGAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2073857 53 -   2193130 GAGAAACCTGTTGCCAGAGGGTTAC-TGTATGGGGA-TGATGGTCCTCTGCGGAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136275 53 -  77216781 GATAAATCTGTTGCCAGAGGGTTAT-TGTATGGGGA-TGATGGTCCTCTGTGGAA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28049103 53 -  80997621 GATAAATCTGTTGCCAGAGGGTTAT-TGTATGGGGA-TGATGGTCCTCTGTGGAA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2105732 53 +  10377808 GATAAACCTGTTGCCAGAGGGTTAT-TGTATGGGGA-TGATGGTCCTCTGTGGAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991039 53 -   8458610 GATAAATCTGTTGCCAGAGGGTTAT-TGTATGGGGA-TGATGGTCCTCTGTGGAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64935664 53 +  75148670 GATAAATCTATTGCCAGAGGGTTAT-TGTATGGGGA-TGATGGTCCTCTGTGGAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2175365 53 +   4244037 GATAAATCTGTTGCCAGAGGGTTAT-TGTATGGGGA-TGATGGTCCTCTGTGGAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198411 53 +   4569836 GATAAATCTGTTGTCAGAGGGTTAT-TGTATGGGGA-TGATGGTCCTCTGTGGAA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1856966 52 +   3513951 GACAGA-AGGTTGCCAGAACATTGT-CTTGTGAGGA-TGATGGTCCTTTTGGGAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1908210 52 +   1920343 GACAGA-AGGTTGCCAGAACATTGT-CTTGTGAGGA-TGATGGTCCTTTTGGGAA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7022286 52 -   7032639 GACAGA-AGGTTGCCAGAACGTTGT-CTTGTGAGGA-TGATGGTCCTTTTGGGAG
i aotNan1.NW_018502359v1    C 0 I 1146
s otoGar3.GL873537          22854167 50 +  28711273 GGCAGATTGGTTGTCAGGAGGTTGTCTGTGTCAGGA-----GATTCCATGGTGAG
i otoGar3.GL873537          I 18 C 0
s mm10.chr11                22126475 51 - 122082543 GGTAAGTCG--TG-CAGACATTTGT-CCCCTGGGCATTGATCATCCTCCTCAGGG
i mm10.chr11                C 0 C 0
s canFam3.chr9              21479665 37 +  61074082 GGCAAA----------------CAT-TTTTTGCACA-TTGTATTTCTTTGTGAAG
i canFam3.chr9              I 1 C 0
s dasNov3.JH570468            491445 52 -    852752 GGCGAGTCAGTTGACAGTAGGTTGG-TCTGTGCCCT-TGGTGGTTTTTGGTGAG-
i dasNov3.JH570468          C 0 C 0
e calJac3.chr5              46147053 386 - 159171411 T

a score=318235.000000
s hg38.chr17_JH159148v1_alt    30898 34 +     88070 CTGATCAGCAGCAAGC------------AGGCTGACAGCAGCTGGT
s panTro5.chr17             16342003 34 +  83181570 CTGATCAGCAGCAAGC------------AGGCTGACAGCAGCTGGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16246882 34 +  83442489 CTGATCAGCAGCAAGC------------GGGCTGACAGCAGCTGGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4093565 34 +   4267968 TTGATCAGCAGCAAGC------------AGGCTGACAGCAGCTGGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2073910 34 -   2193130 TTGATCAGCAGCAAGC------------AGGCTGACAGCAGCTGGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136328 34 -  77216781 CCGATCAGCAGCAAAC------------AGGCTGGCAGCAACTGCT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28049156 34 -  80997621 CCGATCAGCAGCAAAC------------AGGCTGGCAGCAACTGCT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2105785 34 +  10377808 CCGATCAGCAGCAAAC------------AGGCTGGCAGCAACTGCT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991092 34 -   8458610 CCGATCAGCAGCAAAA------------AGGCTGGCAGCAACTGCT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64935717 34 +  75148670 TAGATCAGCAGCAAAC------------AGGCTGGCAGCAAGTGCT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2175418 34 +   4244037 CCGATCAGCAGCAAAC------------AGGCTGGCAGCAACTGCT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198464 34 +   4569836 TTGATCAGCAGCAAGA------------AGGCTGGCAGCAACTGCT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1857018 34 +   3513951 CTGATCAGCAGCAGGA------------AGGCTGGCAGCAGCTGGT
i saiBol1.JH378271          C 0 I 5758
s cebCap1.NW_016107730v1     1908262 34 +   1920343 CTGATCAGCAGCAGCA------------AGGCTGGCAGCAGCTGGT
i cebCap1.NW_016107730v1    C 0 C 0
s otoGar3.GL873537          22854217 32 +  28711273 AGGATCAGCAGCAGGA------------AGGCTGGCAGCAGCTG--
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22126526 45 - 122082543 CTGA-CAGCAGCTGGACACACAGCTGCTGGGCTCACTGCAGCTGCT
i mm10.chr11                C 0 I 3
s canFam3.chr9              21479702 33 +  61074082 -CAACCAACAGCAAAA------------TGTTTGGCTGAAGCTGAA
i canFam3.chr9              C 0 I 3
s dasNov3.JH570468            491497 34 -    852752 TTGATCAGCAGCAGGA------------AGGCTGACAGCAACTGGA
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e calJac3.chr5              46147053 386 - 159171411 T

a score=501492.000000
s hg38.chr17_JH159148v1_alt    30932 51 +     88070 --CACA----------------CAGGTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTAGTCTCACAGCA
s panTro5.chr17             16342037 51 +  83181570 --CACA----------------CAGGTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTTGTCTCACAGCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16246916 51 +  83442489 --CACA----------------CAGGTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTTGTCTCACAGCA
i panPan2.chr17             C 0 I 4108
s gorGor5.CYUI01015385v1     4093599 51 +   4267968 --CACA----------------CAGCTGGGCTGGAAGCAAGCGGTCCTGCAGCAGGTGGTCTCACAGCA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2073944 51 -   2193130 --CACA----------------CAGGTGGGCTGGAAGCAAGTGGTCCTGCAGCACGTGGTCTCACAGCA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136362 51 -  77216781 --CACA----------------CAGGTGGGCTGGAAACAAGTGGTCCTGCAGCAGGTGGTCTCACAGCA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28049190 51 -  80997621 --CACA----------------CAGGTGGGCTGGAAACAAGTGGTCCTGCAGCAGGTGGTCTCACAGCA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2105819 51 +  10377808 --CACA----------------CAGGTGGGCTGGAAACAAGTGGTCCTGCAGCAGGTGGTCTCACAGCA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991126 51 -   8458610 --CACA----------------CAGGTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64935751 51 +  75148670 --CACA----------------CACGTGGGCTGGAAACAAGTGGTCCTGCAGCAGGTGGTCTCACAGCA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2175452 51 +   4244037 --CACA----------------CAGGTGGGCTGGAAACAAGTGGTCCTGCAGCAGGTGGTCTCACAGCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198498 51 +   4569836 --CACA----------------CAGGTGGGCTGGAAGCAAGCAGTCCTGCAGCAGGTGGTCTCACAGCA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1862810 51 +   3513951 --CACA----------------CAGGTGGGCTGGCAGCAGGTGGTCCTGCAGCAGGTGGTCTCACAGCA
i saiBol1.JH378271          I 5758 C 0
s cebCap1.NW_016107730v1     1908296 51 +   1920343 --CACA----------------CAGGTGGGCTGGCAGCAGGTGGTCCTGCAGCAGGTGGTCTCACAGCA
i cebCap1.NW_016107730v1    C 0 C 0
s mm10.chr11                22126574 51 - 122082543 --CACA----------------AGGACTGGTTTAAAATAGGTAGTCCTACAGCAAATGGTTTCATAGCA
i mm10.chr11                I 3 C 0
s canFam3.chr9              21479738 41 +  61074082 --CACA--------------------------ACAAGAGAGTGGTCCTTTAGCAATTATTCTGACAGCA
i canFam3.chr9              I 3 C 0
s dasNov3.JH570468            491531 69 -    852752 CACACAGCAAGGGCTGCTGCAGCAGCTGGGGCGGCAGCAGGTGGTTCTACAGCAGGTGGTCTGACAGCA
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e otoGar3.GL873537          22854249  0 +  28711273 C
e calJac3.chr5              46147053 386 - 159171411 T

a score=192938.000000
s hg38.chr17_JH159148v1_alt    30983 17 +     88070 GGCTGGGCGGCAGCACG
s panTro5.chr17             16342088 17 +  83181570 GGCTGGGCGGCAGCAGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251075 17 +  83442489 GGCTGGGCGGCAGCAGG
i panPan2.chr17             I 4108 C 0
s gorGor5.CYUI01015385v1     4093650 17 +   4267968 GGCTGGGCGGCAGCAGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2073995 17 -   2193130 GGCTGGGCGGCAGCAGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136413 17 -  77216781 GGCTGGGCGGCAGCAGG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28049241 17 -  80997621 GGCTGGGCGGCAGCAGG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2105870 17 +  10377808 GGCTGGGCGGCAGCAGG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991177 17 -   8458610 GGCTGGGCGGCAGCAGG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64935802 17 +  75148670 GGCTGGGCGGCAGCAGG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2175503 17 +   4244037 GGCTGGGCGGCAGCAGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198549 17 +   4569836 GGCTGGGCGGCAGCAGG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1862861 17 +   3513951 GGCTGGGTGGCAGCAGG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1908347 17 +   1920343 GGCTGGGCGGCAGCAGG
i cebCap1.NW_016107730v1    C 0 C 0
s otoGar3.GL873537          22854249 13 +  28711273 ----GATCCACAGCCCA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22126625 17 - 122082543 AGATGGTTGACAGCAGG
i mm10.chr11                C 0 C 0
s canFam3.chr9              21479779 17 +  61074082 GGTTGGTTGGCAGCAAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            491600 17 -    852752 GGAGGGGCGGCAGCAGG
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e calJac3.chr5              46147053 386 - 159171411 T

a score=177552.000000
s hg38.chr17_JH159148v1_alt    31000 16 +     88070 GCTGGCAGCAGCTGGA
s panTro5.chr17             16342105 16 +  83181570 GCTGGCAGCAGCTGGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251092 16 +  83442489 GCTGGCAGCAGCTGGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4093667 16 +   4267968 GCTGGCAGCAGCTGGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2074012 16 -   2193130 GCTGGCAGCAGCTGGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136430 16 -  77216781 GCTGGCAGCAGCTGGA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28049258 16 -  80997621 GCTGGCAGCAGCTGGA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2105887 16 +  10377808 GCTGGCAGCAGCTGGA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991194 16 -   8458610 GCTGGCAGCAGCTGGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64935819 16 +  75148670 GCTGGCAGCAGCTGGA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2175520 16 +   4244037 GCTGGCAGCAGCTGGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198566 16 +   4569836 GCTGGCAGCAGCTGGA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1862878 16 +   3513951 GCTGGCAGCAGCTGGA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1908364 16 +   1920343 GCTGGCAGCAACTGGA
i cebCap1.NW_016107730v1    C 0 C 0
s otoGar3.GL873537          22854262 16 +  28711273 GGTTCAGACAACCAGG
i otoGar3.GL873537          C 0 I 95
s canFam3.chr9              21479796 16 +  61074082 GCTGACAACAGTTGGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            491617 16 -    852752 GCTGGCAGCAGCTGGA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22126642  0 - 122082543 C
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e calJac3.chr5              46147053 386 - 159171411 T

a score=741600.000000
s hg38.chr17_JH159148v1_alt    31016 79 +     88070 GCCACAGCTCTGGTTTAGGCAACCAGGCAGGTAGACACTCGTGGGGTGGTAGCAGGTTCTCCTGCAGTAGATG--GG-----TGCA
s panTro5.chr17             16342121 79 +  83181570 GCCACAGCTCTGGTTTAGGCAACCAGGCAGGCAGACAGTTGTGGGGTGGTAGCAGGTTCTCCTGCAGTAGACG--GG-----TGCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251108 79 +  83442489 GCCACAGCTCTGGTTGAGGCAACCAGGCAGGTAGACAGTCATGGGGTGGTAGCAGGTTCTCCTGCAGTAGACG--GG-----TGCA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4093683 79 +   4267968 GCCACAGCTCTGGTTTAGGCAGCCAGGCAGGCAGACAGTTGTGGGGTGGTAGCAGGTTCTTCTGCAGTAGACG--GG-----TGCA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2074028 79 -   2193130 GCCACAGCTCTGGTTTAGGCCACCAGGCAGACAGACACACGTGGGGTGGTAGCAGGTTCTCCTGCAGTAGACG--GG-----TGCA
i nomLeu3.chrUn_GL397460_1  C 0 I 4755
s rheMac8.chr16             30136446 79 -  77216781 GCCACAGCTCTGGTTTAGGCAACCAGGCAGGCAGACACACGTGGGGTGGTAGCAGGTTCTCCTGCAGTAGACA--GG-----TGCA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28049274 79 -  80997621 GCCACAGCTCTGGTTTAGGCAACCAGGCAGGCAGACACACGTGGGGTGGTAGCAGGTTCTCCTGCAGTAGACA--GG-----TGCA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2105903 79 +  10377808 GCCACAGCTCTGGTTTAGGCAACCAGGCAGGCAGACACACGTGGGGTGGTAGCAGGTTCTCCTGCAGTAGACA--GG-----TGCA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991210 79 -   8458610 GCCACAGCTCTGGTTTAGGCAACCAGGCAGGCAGACACACGTGGGGTGGTAGCAGGTCCTCCTGCAGTAGACA--GG-----TGCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64935835 79 +  75148670 GCCACAGCTCTGATCTAGGCAACCAGGCAGGCAGACACATGTAGGGTGGTAGCAGGTTCTCCTGCAGTAGACA--GG-----TGCA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2175536 79 +   4244037 GCCACAGCTCTGGTTTAGGCAACCAGGCAGGCAGACACACGTGGGGTGGTAGCAGGTTCTCCTGCAGTAGACA--GG-----TGCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198582 79 +   4569836 GCCACAGCTCTGGTCTAGGCAACCAGGCAGGCAGACACACGTTGGGTGGTAACAGGTTCTTCTGCAGTAGACA--GG-----TGCA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1862894 79 +   3513951 TCCACAGCTCTGGTTCAGGCAACCGGGCAGGCGGACACATGTGGGGTGGTAGCAGGTTCTTGTGCAGTACACA--GG-----GGCA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1908380 79 +   1920343 TCCACAGCTCTGGTTTAGGCAACCAGGCAGGTAGACACACGTGGGGTGGTAGCAGGTTCTCCTGCAGTACACA--GG-----TGCA
i cebCap1.NW_016107730v1    C 0 C 0
s canFam3.chr9              21479812 81 +  61074082 TCCACAGCCTTGGGCTAGGCACCCAGGCAGGCAGCAGCAGGTGGGTTGGTAGCAGGTTCTTCTGCAGTACACAGGGG-----TGCA
i canFam3.chr9              C 0 I 40
s dasNov3.JH570468            491633 84 -    852752 TCCAAAGCTCTGGGGTTGGCAGCCAGGCAGGCAGCAGCATGTTGGGTGGTAGCAGGTTCTCCGGCAGTACACA--GGGCCACTGCA
i dasNov3.JH570468          C 0 I 25
e mm10.chr11                22126642  0 - 122082543 C
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e otoGar3.GL873537          22854278 95 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T

a score=586589.000000
s hg38.chr17_JH159148v1_alt    31095 61 +     88070 CAGGAGCTGGGCTGGCAGCAGCTGGACCCACAGCTGG-TTTGGCCACAGCAGCTGGACCCAC
s panTro5.chr17             16342200 61 +  83181570 CAGGAGCTGGGCTGGCAGAAGCTGGACCCACAGCTGG-TTTGGCCACAGCAGCTGGACCCAC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251187 62 +  83442489 CAGGAGCTGGGCTGGCAGCAGCTGGACCCACAGCTGGTTTTGGCCACAGCAGCTGGACCCAC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4093762 61 +   4267968 CAGGAGCTGGGCTGGCAGCAGCTGGACCCACAGCTGG-TTTGGCCACAGCAGCTGGACCCAC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2078862 61 -   2193130 CAGCAGCTGGGCTGGCAGCAGCTGGACCCACAGCTGG-TTTGGCCACAGCAGCTGGACCCAC
i nomLeu3.chrUn_GL397460_1  I 4755 C 0
s rheMac8.chr16             30136525 61 -  77216781 CAGGAGCTGGGCTGGCAGCAGCTGGACCCACAGTTGG-TTTGGCCACAGCAGCTGGACCCAC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28049353 61 -  80997621 CAGGAGCTGGGCTGGCAGCAGCTGGACCCACAGTTGG-TTTGGCCACAGCAGCTGGACCCAC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2105982 61 +  10377808 CAGGAGCTGGGCTGGCAGCAGCTGGACCCACAGTTGG-TTTGGCCACAGCAGCTGGACCCAC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991289 61 -   8458610 CAGGAGCTGGGCTGGCAGCAGCTGGACCCACAGTTGG-TTTGGCCACAGCAGCTGGACCCAC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64935914 61 +  75148670 CAGGAGCTGGTCTGGCCACAGCTGGACCCACAGCTGG-TTTGGCCACAGCAGCTGGACCCAC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2175615 61 +   4244037 CAGGAGCTGGGCTGGCAGCAGCTGGACCCACAATTGG-TTTGGCCACAGCAGCTGGACCCAC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198661 61 +   4569836 CAGGAGCTGGGCTGGCCACAGCTGGACCCACAGCTGG-TTTGGCCACAGCAGCTGGACCCAC
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1862973 61 +   3513951 CAGGAGCTGTTCTGACCACAGCTGGACCCACAGCTGG-TTTGGCCACAGCAGCTGGACCCAC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1908459 61 +   1920343 CAGGAGCTGGGCTGGCCACAGCTGGACCCACAGCTGG-TTTGGCCAAAGCAGCTGGACCCAC
i cebCap1.NW_016107730v1    C 0 C 0
s canFam3.chr9              21479933 61 +  61074082 CGGCAGCAAGGCTGGCAGCAGCTGGACACACAGCATG-TGGGCTTGCAGCAGGTGGTCCTAC
i canFam3.chr9              I 40 C 0
s dasNov3.JH570468            491742 61 -    852752 CAGCAACTGGGGCGGCAGCAGCTGTACCTACCACAAG-TTTGGCCACAGGAGCTGGACCCAC
i dasNov3.JH570468          I 25 C 0
e mm10.chr11                22126642  0 - 122082543 C
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e otoGar3.GL873537          22854278 95 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T

a score=91425.000000
s hg38.chr17_JH159148v1_alt    31156 9 +     88070 AGCAGATGG
s panTro5.chr17             16342261 9 +  83181570 AGCAGGTGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251249 9 +  83442489 AGCAGGAGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4093823 9 +   4267968 AGCAGATGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2078923 9 -   2193130 AGCAGGTGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136586 9 -  77216781 AGCAGGAGG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28049414 9 -  80997621 AGCAGGTGG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106043 9 +  10377808 AGCAGGTGG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991350 9 -   8458610 AGCAGGAGG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64935975 9 +  75148670 AGCAGATGG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2175676 9 +   4244037 AGCAGGAGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198722 9 +   4569836 AGCAGGTGG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1863034 9 +   3513951 AGCATGTGG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1908520 9 +   1920343 AGCAGGTGG
i cebCap1.NW_016107730v1    C 0 C 0
s otoGar3.GL873537          22854373 9 +  28711273 GGCAGCTGG
i otoGar3.GL873537          I 95 C 0
s canFam3.chr9              21479994 9 +  61074082 AGCAGGTGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            491803 9 -    852752 AACAGGTGG
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22126642 0 - 122082543 C
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e calJac3.chr5              46147053 386 - 159171411 T

a score=231860.000000
s hg38.chr17_JH159148v1_alt    31165 23 +     88070 GC-------------------TGGCAGCAGGGTGTGCTGCAG
s panTro5.chr17             16342270 23 +  83181570 GC-------------------TGGCAGCAGGGTGTGTTGCAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251258 23 +  83442489 GCNNNNNNNNNNNNNNNNNNNNG-------------------
i panPan2.chr17             C 0 I 44792
s gorGor5.CYUI01015385v1     4093832 23 +   4267968 GC-------------------TGGCAGCAGGGTGTGCTGCAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2078932 23 -   2193130 GC-------------------TGGCAGCAGGGTGTGCTGCAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136595 23 -  77216781 GC-------------------TGGCAGCAGGGTGTGCTGCAG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28049423 23 -  80997621 GC-------------------TGGCAGCAGGGTGTGCTGCAG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106052 23 +  10377808 GC-------------------TGGCAGCAGGGTGTGCTGCAG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991359 23 -   8458610 GC-------------------TGGCAGCAGGGTGTGCTGCAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64935984 23 +  75148670 GC-------------------TGGCAGCAGGGTGTGCTGCAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2175685 23 +   4244037 GC-------------------TGGCAGCAGGGTGTGCTGCAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198731 23 +   4569836 GC-------------------TGGCAGCAGGGTGTGCTGCAG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1863043 23 +   3513951 GC-------------------TGGCAGCAGGGTGTGCTGCAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1908529 23 +   1920343 GC-------------------CGGCAGCAGGGTGTGCTGCAG
i cebCap1.NW_016107730v1    C 0 C 0
s otoGar3.GL873537          22854382 23 +  28711273 GC-------------------TGGCAGCAGGGTGTGCTACAG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22126642 23 - 122082543 GC-------------------TGGCAGCAGGATGTGCTGCAG
i mm10.chr11                C 0 I 12
s canFam3.chr9              21480003 23 +  61074082 -------------------TTTGACAGCAAGTTGGGCGGCAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            491812 23 -    852752 GC-------------------TGGCAGCAGGGAGTGGTGCAA
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e calJac3.chr5              46147053 386 - 159171411 T

a score=139937.000000
s hg38.chr17_JH159148v1_alt    31188 17 +     88070 CAGGAA---------------------------GGCTGGCAGCA
s panTro5.chr17             16342293 17 +  83181570 CAGGAA---------------------------GGCTGGCAGCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296073 17 +  83442489 CAGGAA---------------------------GGCTGGCAGCA
i panPan2.chr17             I 44792 C 0
s gorGor5.CYUI01015385v1     4093855 17 +   4267968 CAGGAA---------------------------GGCTGGCAGCA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2078955 17 -   2193130 CAGGAA---------------------------GGCTGGCAGCA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136618 17 -  77216781 CAGGAA---------------------------GGCTGGCAGCA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28049446 17 -  80997621 CAGGAA---------------------------GGCTGGCAGCA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106075  6 +  10377808 CAGGAA--------------------------------------
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991382 17 -   8458610 CAGGAA---------------------------GGCTGGCAGCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936007 17 +  75148670 CAGGAA---------------------------GGCTGGCAGCA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2175708 44 +   4244037 CAGGAAGGCTGGCAGCAGCTGGTCACACAGGTGGGCTGGCAGCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198754 17 +   4569836 CAGGAA---------------------------GGCTGGCAGCA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1863066 17 +   3513951 CAGGAA---------------------------GGCTGGCAGCA
i saiBol1.JH378271          C 0 I 5504
s cebCap1.NW_016107730v1     1908552 17 +   1920343 CAGGAA---------------------------GGCTGGCAGCA
i cebCap1.NW_016107730v1    C 0 C 0
s otoGar3.GL873537          22854405  4 +  28711273 CAGG----------------------------------------
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22126677 17 - 122082543 CAGCAC---------------------------ACCTGGCAGCA
i mm10.chr11                I 12 C 0
s canFam3.chr9              21480026 17 +  61074082 CAGCAA---------------------------GGTTGGCAGCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            491835 17 -    852752 CAGGAA---------------------------GGGCGGCAGCA
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e calJac3.chr5              46147053 386 - 159171411 T

a score=45641.000000
s hg38.chr17_JH159148v1_alt    31205 4 +     88070 GCTG
s panTro5.chr17             16342310 4 +  83181570 GCTG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296090 4 +  83442489 GCTG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4093872 4 +   4267968 GCTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2078972 4 -   2193130 GCTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136635 4 -  77216781 GCTG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28049463 4 -  80997621 GCTG
i macFas5.chr16             C 0 C 0
s cerAty1.NW_012006043v1     1991399 4 -   8458610 GCTG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936024 4 +  75148670 GCTG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2175752 4 +   4244037 GCTG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198771 4 +   4569836 GCTG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1868587 4 +   3513951 GCTG
i saiBol1.JH378271          I 5504 C 0
s cebCap1.NW_016107730v1     1908569 4 +   1920343 GCTG
i cebCap1.NW_016107730v1    C 0 I 138
s otoGar3.GL873537          22854409 2 +  28711273 --TG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22126694 4 - 122082543 GGTG
i mm10.chr11                C 0 I 4
s canFam3.chr9              21480043 4 +  61074082 GCTG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            491852 4 -    852752 GCTG
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e calJac3.chr5              46147053 386 - 159171411 T
e macNem1.NW_012014910v1     2106081 0 +  10377808 C

a score=456017.000000
s hg38.chr17_JH159148v1_alt    31209 51 +     88070 GTCACACAGGTGGGCTGGCAGCAGGTGGTCCTG------------CAGCAGGTGTTTTGACAG
s panTro5.chr17             16342314 51 +  83181570 GTCACACAGGTAGGCTGGCAGCAGGTGGTCCTA------------CAGCAGGTGTTTTGACAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296094 51 +  83442489 GTCACACAGGTGGGCTGGCAGCAGGTGATCCTG------------CAGCAGGTGTTTTGACAG
i panPan2.chr17             C 0 T 49158
s gorGor5.CYUI01015385v1     4093876 51 +   4267968 GTCACACAGGTAGGCTGGCAGCAGGTGGTCCTA------------CAGCAGGTGTTTTGACAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2078976 51 -   2193130 GTCACACAGGTCGGCTGGCAGCAGGTGGTCCTA------------CAGCAGGTGTTTTGACAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136639 63 -  77216781 GTCACACAAGTGGGCTGGCAGCAGCTGGTCACACAGGTGGGCTGGCAGCAGGTGTTTGGACAG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28049467 63 -  80997621 GTCACACAAGTGGGCTGGCAGCAGCTGGTCACACAGGTGGGCTGGCAGCAGGTGTTTTGACAG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106081 51 +  10377808 ------------GGCTGGCAGCAGCTGGTCACACAGGTGGGCTGGCAGCAGGTGTTTTGACAG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991403 63 -   8458610 GTCACACAGGTGGGCTGGCAGCAGCTGGTCACACAGGTGGGCTGGCAGCAGGTGTTTTGACAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936028 63 +  75148670 GTCACACAGGTGGGCTGGCAGCAGCTGGTCACACAGGTGGGCTGGCAGCAGGTGTTTTGACAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2175756 63 +   4244037 GTCACACAGGTGGGCTGGCAGCAGCTGGTCACACAGGTGGGCTGGCAGCAGGTGTTTTGACAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198775 51 +   4569836 GTCATACAGGTGGGCTGGCAGCAGGTGGTCCTA------------CAGCACGTGTTTTGACAG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1868591 51 +   3513951 GACACACAGGTGGGTTGGCAGCATGTGGTCCTG------------CAGCAGGTGGTCTCACAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1908711 51 +   1920343 GTCACACAGGTGGGCTGGCGGCAGGTGGTCCTG------------CAGCAGGTGTTTTGACAG
i cebCap1.NW_016107730v1    I 138 C 0
s otoGar3.GL873537          22854411 51 +  28711273 GTGACAGAGGTGGGTTTCCAGCAGGTGGTCCTG------------CAGCAGGTGGTTGGACAG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22126702 50 - 122082543 CTCTTATCTGTTGGCTTACAAC-GGTAGTCTTG------------TAGCATGTAGTTTCACAG
i mm10.chr11                I 4 C 0
s canFam3.chr9              21480047 39 +  61074082 ------------GACCCGCAGCAGCTGGACCCA------------CTGCAGCCTTGTCCACAG
i canFam3.chr9              C 0 I 3
s dasNov3.JH570468            491856 51 -    852752 GTCACACAGGTTGGCTGGCAGCAGGTGGTCCTA------------CAGCAGGTGGTCCGACAG
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e calJac3.chr5              46147053 386 - 159171411 T

a score=544678.000000
s hg38.chr17_JH159148v1_alt    31260 46 +     88070 CAAGTTGGGTGGCAGCAAGGCTG------------------------------GCAGCAGCTGGACACACAGCAGG
s panTro5.chr17             16342365 46 +  83181570 CAAGTTGGGTGGCAGCAAGGCTG------------------------------GCAGCAGCTGGACACACAGCAGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16246987 46 +  83442489 CAAGTTGGGTGGCAGCAAGGCTG------------------------------GCAGCAGCTGGACACACAGCAGG
i panPan2.chr17             T 49158 C 0
s gorGor5.CYUI01015385v1     4093927 46 +   4267968 CAAGTCGGATGGCAGCAAGGCTG------------------------------GCAGCAGCTGGACACACAGCAGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2079027 46 -   2193130 CAAGTTGGGCGGCAGCAAGGCTG------------------------------GCAGCAGCTGGACACACAGCAGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136702 46 -  77216781 CAAGTTGGGCGGCAGCAAGGCTG------------------------------GCAGCAGCTGGACACACAGCAGG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28049530 46 -  80997621 CAAGTTGGGCGGCAGCAAGGCTG------------------------------GCAGCAGCTGGACACACAGCAGG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106132 46 +  10377808 CAAGTTGGGCGGCAGCAAGGCTG------------------------------GCAGCAGCTGGACACACAGCAGG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991466 46 -   8458610 CAAGTTGGGCGGCAGCAAGGCTG------------------------------GCAGCAGCTGGACACACAGCAGG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936091 46 +  75148670 CAAGTTGGGCGGCAGCAAGGCTG------------------------------GCAGCAGCTGGACACACAGCAGG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2175819 46 +   4244037 CAAGTTGGGCGGCAGCAAGGCTG------------------------------GCAGCAGCTGGACACACAGCACG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198826 46 +   4569836 CAAGTTGGGCGGCAGCAAGGCTG------------------------------GCAGCAGCTGGACACACAGCAGG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1868642 46 +   3513951 CAGGCTGGGTGGCAGCAGGGCTG------------------------------GCAGCAGCTGGACACACAGCAGG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1908762 46 +   1920343 CAAGTTGGGCGGCAGCAAGGCTG------------------------------GTAGCAGCTGGACACACAGCAGG
i cebCap1.NW_016107730v1    C 0 C 0
s otoGar3.GL873537          22854462 46 +  28711273 CAAGTGGGGCGGCAGCAGGGCTG------------------------------GCAGCAGCTGGACTCACAGCAGC
i otoGar3.GL873537          C 0 I 1
s mm10.chr11                22126752 76 - 122082543 CAAGTTGGTTGGCAACAGGGTTGATAGAAGCCGTAGTTAGTGTAAATTTGGCCACAGCAGCTGGGCCCACAGCAGT
i mm10.chr11                C 0 I 1
s canFam3.chr9              21480089 46 +  61074082 CTGGACCCACAGCAGCTAGGCTG------------------------------GCAGCAGCTGGACACACAGCATG
i canFam3.chr9              I 3 I 1
s dasNov3.JH570468            491907 41 -    852752 CAGAGTGGGCGGCAGCAAGGCTG------------------------------GCAGCAGCTGGACCCACA-----
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e calJac3.chr5              46147053 386 - 159171411 T

a score=8281.000000
s hg38.chr17_JH159148v1_alt    31306 1 +     88070 A
s panTro5.chr17             16342411 1 +  83181570 A
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247033 1 +  83442489 A
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4093973 1 +   4267968 A
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2079073 1 -   2193130 A
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136748 1 -  77216781 A
i rheMac8.chr16             C 0 I 30
s macNem1.NW_012014910v1     2106178 1 +  10377808 A
i macNem1.NW_012014910v1    C 0 I 60
s cerAty1.NW_012006043v1     1991512 1 -   8458610 A
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936137 1 +  75148670 A
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2175865 1 +   4244037 A
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198872 1 +   4569836 A
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1868688 1 +   3513951 A
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1908808 1 +   1920343 A
i cebCap1.NW_016107730v1    C 0 C 0
s dasNov3.JH570468            491948 1 -    852752 A
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22126828 1 - 122082543 I
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e canFam3.chr9              21480135 1 +  61074082 I
e otoGar3.GL873537          22854508 1 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576 0 -  80997621 C

a score=489906.000000
s hg38.chr17_JH159148v1_alt    31307 58 +     88070 GGGCTGGCAGCAGGGTGTGCTGCTGCAGGTGGTCACAGTGGTGGGCTTCCAGCAGGTG
s panTro5.chr17             16342412 58 +  83181570 GGGCTGGCAGCAGGGTGTGCTGCAGCAGGTGGTCACAGTGGTGGGCTGCCAGCAGGTG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247034 58 +  83442489 GGGCTGGCAGCAGGGTGTGCTGCGGCAGGTGGTCACAGTGGTGGGCTGCCGGCAGGTG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4093974 58 +   4267968 GGGCTGGCAGCAGGGTGTGCTGCAGCAGGTGGTCACAGTGGTGGGCTGCCAGCAGGTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2079074 58 -   2193130 GGGCTGGCAGCAGGGTGTGCTGCGGCAGATGGTCACAGTGGTGGGCTGCCAGCAGGTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136779 58 -  77216781 GGGCTGGCAGCAGGGTGTGCTGCTGCAGGTGGTCACACAGGTGGGCTTCCAGCAGGTG
i rheMac8.chr16             I 30 C 0
s macNem1.NW_012014910v1     2106239 58 +  10377808 GGGCTGGCAGCAGGGTGTGCTGCTGCAGGTGGTCACACAGGTGGGCTTCCAGCAGGTG
i macNem1.NW_012014910v1    I 60 C 0
s cerAty1.NW_012006043v1     1991513 58 -   8458610 GGGCTGGCAGCAGGGTGTGCTGCTGCAGGTGGTCACACAAGTGGGCTTCCAGCAGGTG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936138 58 +  75148670 GGGCTGGCAGCAGGGTGTGCTGCTGCAGGTGGTCACACAGGTGGGCTTCCAGCAGGTG
i chlSab2.chr16             C 0 I 27
s manLeu1.NW_012106252v1     2175866 58 +   4244037 GGGCTGGCAGCAGGGTGTGCTGCTGCAGGTGGTCACACAGGTGGGCTTCCAGCAGGTG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198873 58 +   4569836 GGGCTGGCAGCAGGGTGTGCTGCTGCAGGTGGTCACAGTGGTAGGCTGCCAGCAGGTG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1868689 58 +   3513951 GGGCTGGCAGCAGGGTGTGCTGCTGCAGCTGGTCACACAGGTGGGCTTCCAGCAGGTA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1908809 58 +   1920343 GGGCTGGCAGCAGGGTGTGCTGCTGCAGCTGGTCACACAGGTGGGCTTCCAGCAAGTG
i cebCap1.NW_016107730v1    C 0 C 0
s otoGar3.GL873537          22854509 58 +  28711273 TGGCTGGCAGCAGGGTGTGCTGCAGCAGGTGGTCTCACAGGTGGGCTGCCAGCAGGTG
i otoGar3.GL873537          I 1 I 15
s mm10.chr11                22126829 43 - 122082543 GGGGTGGCA---------------GCAGCTGGTCACACAGGTTGGTCTCTGGCAGGTG
i mm10.chr11                I 1 I 15
s canFam3.chr9              21480136 31 +  61074082 GGGCTTGCAGCAGGTGGTCCTGCAGCAGGTG---------------------------
i canFam3.chr9              I 1 C 0
s dasNov3.JH570468            491949 36 -    852752 GAACTGGAGCCATAG----------------------CAGGTGGGCTGGCAGCAGGTG
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576  0 -  80997621 C

a score=115951.000000
s hg38.chr17_JH159148v1_alt    31365 12 +     88070 GTCCTGCAGCAG
s panTro5.chr17             16342470 12 +  83181570 GTCCTGCAGCAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247092 12 +  83442489 GTCCTGCAGCAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4094032 12 +   4267968 GTCCTGCAGCAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2079132 12 -   2193130 GTCCTGCAGCAT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136837 12 -  77216781 GTCCTGCAGCAG
i rheMac8.chr16             C 0 I 15
s macNem1.NW_012014910v1     2106297 12 +  10377808 GTTCTGCAGCAG
i macNem1.NW_012014910v1    C 0 I 15
s cerAty1.NW_012006043v1     1991571 12 -   8458610 GTCCTGCAGCAG
i cerAty1.NW_012006043v1    C 0 I 15
s manLeu1.NW_012106252v1     2175924 12 +   4244037 GTCCTGCAGCAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198931 12 +   4569836 GTCCTGCAGCAT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1868747 12 +   3513951 GTCCTGCAGCAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1908867 12 +   1920343 GTCCTGCAGCAG
i cebCap1.NW_016107730v1    C 0 C 0
s otoGar3.GL873537          22854582 12 +  28711273 GTCCTGCAGCAG
i otoGar3.GL873537          I 15 C 0
s mm10.chr11                22126887 12 - 122082543 GTTCTGTAGCAA
i mm10.chr11                I 15 C 0
s canFam3.chr9              21480167 12 +  61074082 GTCCTGCAGCAT
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            491985 12 -    852752 GGCTGGCAGCAG
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e calJac3.chr5              46147053 386 - 159171411 T
e chlSab2.chr16             64936196 27 +  75148670 I
e macFas5.chr16             28049576  0 -  80997621 C

a score=214452.000000
s hg38.chr17_JH159148v1_alt    31377 27 +     88070 GTAGGCTGACAGCAAGGGGAGCAACAG
s panTro5.chr17             16342482 27 +  83181570 GTAGGCTGACAGCAAGGGGAGAAACAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247104 27 +  83442489 GTAGGCTGACAGCAAGGGGAGAAACAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4094044 27 +   4267968 GTAGGCTGACAGCAAGGGGAGCAACAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2079144 27 -   2193130 GTAGGCTGACAGCAAGGGGAGCAGCAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136864 27 -  77216781 GTAGGCTGACAGCAAGGGGAGCAACAG
i rheMac8.chr16             I 15 C 0
s macNem1.NW_012014910v1     2106324 27 +  10377808 GTAGGCTGGCAGCAAGGGGAGCAACAG
i macNem1.NW_012014910v1    I 15 C 0
s cerAty1.NW_012006043v1     1991598 27 -   8458610 GTAGGCTGGCAGCAAGGGGAGCAACAG
i cerAty1.NW_012006043v1    I 15 C 0
s chlSab2.chr16             64936223 27 +  75148670 GTAGGCTGGCAGCAAGGGGAGCAACAG
i chlSab2.chr16             I 27 C 0
s manLeu1.NW_012106252v1     2175936 19 +   4244037 GTGGTCCTGCAGCACGTAG--------
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198943 27 +   4569836 GTAGGCTGGCAGCAAGGGGAGCAACAG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1868759 27 +   3513951 GTGTTTTGACAGCAAGTTGGGCGGCAG
i saiBol1.JH378271          C 0 I 12726
s cebCap1.NW_016107730v1     1908879 27 +   1920343 GTGGTCCTGCAGCACGTAGGCTGGCAG
i cebCap1.NW_016107730v1    C 0 I 15
s otoGar3.GL873537          22854594 27 +  28711273 GTGGACTGGCAACAAGGGGAGCAACAG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22126899 27 - 122082543 CTAGGCTGATAGCAAGAGGAGTAGCAG
i mm10.chr11                C 0 I 3
s canFam3.chr9              21480179 26 +  61074082 GTAGGCTGGCAGTAAGGGGAGCAGAA-
i canFam3.chr9              C 0 I 4
s dasNov3.JH570468            491997 27 -    852752 GTGGGCTGGCAGCAGGGAGAGCAGCAG
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576  0 -  80997621 C

a score=604099.000000
s hg38.chr17_JH159148v1_alt    31404  82 +     88070 TGGGTCATGGTG--------------------------------------------------TCAGGGGTGGAGGGTGGACTTCTGTTCAGAGGTGAATTTCCCAGGATCTGATG---ACCCCTTGCCCTCTGGA
s panTro5.chr17             16342509  82 +  83181570 TGGGTCATGGTG--------------------------------------------------TCAGGGGTGGAGGGTGGACTTCTGTTCAGAGGTGAATTTCCCAGGATCTGATG---ACCCCTTGCCCTCTGGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247131  82 +  83442489 TGGGTCATGGTG--------------------------------------------------TCAGGGGTGGAGGGTGGACTTCTGTTCAGAGGTGAATTTCCCAGGATCTGATG---ACCCCTTGCCCTCTGGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4094071  82 +   4267968 TGGGTCATGGTG--------------------------------------------------TCAGGGGTGGAGGGTGGACTTCTGTTCAGAGGTGAATTTCCCAGGATCTGATG---ACCCCTTGCCATCTGGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2079171  82 -   2193130 TGGGTCATTGTG--------------------------------------------------TCAGGAGTGAAGGGTGGACTTCTGTTCAGAGGTGAGTTTCCCAGAATCTGATG---ACCCCTTGCAATCTGGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136891  82 -  77216781 TTGGTCATGGTG--------------------------------------------------TCAGGGGTGGAGGGTGGGTTTCTGTTCAGAGGTGAGTTTCCCAGAATGTGATG---ACCCCTTGCAATCTGGA
i rheMac8.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106351  82 +  10377808 TTGGTCATGGTG--------------------------------------------------TCAGGGGTGGAAGGTGGGTTTCTGTTCAGAGGTGAGTTTCCCAGAATGTGATG---ACCCCTTGCAATCTGGA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991625  82 -   8458610 TTGGTCATGGTG--------------------------------------------------TCAGGGGTGGAGGGTGGGTTTCTGTTCAGAGGTGAGTTTCCCAGAATGTGATG---ACCCCTTGCAATCTGGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936250  82 +  75148670 TTGGTCATGGTG--------------------------------------------------TCAGGGGTGGAGGGTGGGTTTCTGATCAGAGGTGAGTTTCCCAGAATGTGATG---ACCCCTTGCAATTGGGA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2175955 100 +   4244037 --------GCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT------------------------TCAGAGGTGAATTTCCCAGAATGTGATG---ACCCCTTGCAATCTGGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2198970  82 +   4569836 TTGGTCATGGTG--------------------------------------------------TCAGGTGTGGAGGGTGGGTTTCTGTTCAGATGTGAGTTTCCCAGAATGTGATG---ACCCCTTGCAATCTGGA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1881512  82 +   3513951 TAAGTCATAGTG--------------------------------------------------TCAGGGGTGGAGGGTGAGTTCCTGTTCAGAGGTGAGTTTCCCAGAATCTGGTG---ACTCCCTCCAATCTGGG
i saiBol1.JH378271          I 12726 T 18209
s cebCap1.NW_016107730v1     1908921  82 +   1920343 TGGGTCATGGTG--------------------------------------------------TCAGGGGTGGACGGTGGGCTCCTATTCAGAGGTGAGTTTCCCAGAGTCTGGTG---ACTCCTTCCCATCTGGG
i cebCap1.NW_016107730v1    I 15 C 0
s otoGar3.GL873537          22854621  81 +  28711273 TGGGTCATGGTG--------------------------------------------------TC-TGTGTGGAGGGTGGGTTTCTGTTCAGAGGTGAGTTTCCCAGAATCTGCTG---ATGTCTTCCAATGTGGA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22126929  82 - 122082543 TTGGTAATGGTG--------------------------------------------------TTAGGTGTTGGGGGTGGTGTACTGTTTACAGGTGAGTCTTCTAGAAACCTTTG---ACTTCATTTCAGTTGGG
i mm10.chr11                I 3 C 0
s canFam3.chr9              21480209  85 +  61074082 CCAGTCATGCTG--------------------------------------------------TCAGTGGTGGAAGGTGAGCTTCTGTTTTGCGTTGTGGTTTTTAGATTCTGTTACCTATTCCTTCCATTCTGGG
i canFam3.chr9              I 4 C 0
s dasNov3.JH570468            492024  76 -    852752 GAAGTCATGGTA--------------------------------------------------TCAG--GTGGAGG--GGGTTCCTTTTCAGAGGTG--TTTCCCAGAATCTGGGG---ACTCCTTAAATGCAGTG
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576   0 -  80997621 C

a score=3301930.000000
s hg38.chr17_JH159148v1_alt    31486 451 +     88070 CCTTTTATACAACTGGCCTCC-AAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTATGTTGTTTTCCACAGTCATTT-TG-GTATTGTCAAAGGGGAAGTTGTTTTCTAAAG-GTTATAAATCTTTTGAAAGTAAGGGTTTAATCTG-----TTGCTTAATTGTGGATTACTCATAGAAAC--TATTTCAGATAAAAGGAAG----CCCGTCTCATCATCAGCATTGTTCCTGCTCTGACCATCTTCTGGTGATGTG--ATAGTTCCTGGTGA-CCAGGGAGGCTCAGGA-AGTTCTCTCTACCCAGCCTCATTCTTT-GGTTGTATGTAGGT-------------------------------------TGGCAAGTGTCTGTGGGG----AGAATCATGATTCTGATATGGTCACAAAGACAAAATGAATCCATGCCTATGTTCAAGACTGTTCACCCACCAAAATCTGTTTCAAGA----C--TAA-CAGGCATC--TCTCTCTGTACA
s panTro5.chr17             16342591 451 +  83181570 CCTTTTATACATCTGGCCTCC-AAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTATGTTGTTTTCCACAGTCATTT-TG-GTATTGTCAAAGGGGAAGTTGTTTCCTAAAG-GTTATGAATCTTTTGAAAGTAAGGGTTTAATCTG-----TTGCTTAATTGTGGATTACTCATAGAAACTTTATTTCAGATAAAAGGAAG----CCCGTCTCATCATCAGCATCGTTCCTGCTCTGACCATCTTCTGGTGATGTG--ATAGTTCCTGGTGA-CTGGGGAGGCTCAGGA-AGTTCTCTGTACCCAGCCTCATTCTTT-GGTTGTATGTAGGT-------------------------------------TGGCAAGTGTCTGTGGGG----AGAATCATGATGCTGATATGTTCACAAAGACAAAATGAATCCATGCCGGTGTTCAAGACTGTTCACCCACCAAAATCTGTTTCAAGA----C--TAA-CAGGCA----TCTCTCTGTAGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247213 451 +  83442489 CCTTTTATACATCTGGCCTCC-AAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTATGTTGTTTTCCACAGTCATTT-TG-GTATTGTCAAAGGGGAAGTTGTTTCCTAAAG-GTTATGAATCTTTTGAAAGTAAGGGTTTAATCTG-----TTGCTTAATTGTGGATTACTCATAGAAACTTTATTTCAGATAAAAGGAAG----CCCGTCTCATCATCAGCATCGTTCCTGCTCTGACCATCTTCTGGTGATGTG--ATAGTTCCTGGTGA-CTGGGGAGGCTCAGGA-AGTTCTCTCTACCCAGCCTCATTCTTT-GGTTGTATGTAGGT-------------------------------------TGGCAAGTGTCTGTGGGG----AGAATCATGATGCTGATAGGTTCACAAAGAGAAAATGAATCCATGCCGGTGTTCAAGACTGTTCACCCACCAAAATCTGTTTCAAGA----C--TAA-CAGGCA----TCTCTCTGTAGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4094153 447 +   4267968 CCTTTTATACATCTGGCCTCC-AAAGTTTCCACCAATCAGCAGGACGTTTCCTTGTTGCTGTTTATGTTGTTTTCCACAGTCATTT-TG-GTATTGTCAAAGGGGAAGTTGTTTCCTAAAG-GTTATGAATCTTTTGAAAGTAAGGGTTTAATCTG-----TTGCTTAATTGTGGATTACTCATAGAAACTTTATTTCAGATAAAAGGAGG----CCCGTCTCATCATCAGCATAGTTCCTGCTCTGACCATCTTCTGGTGATGTG--ATAGTTCCTGGTGA-CTGGGGAGGCTCAGGA-AGTTCTCTCTACCCAGCCTCATTCTTT-GGTTGTATGTAGGT-------------------------------------TAGCAAGTGTCTGTGGGG----AGAATCATGATGCTGATATGTTCACAAAGACAAAACA----CATGCCTGTGTTCAAGACTGTTCACCCACCAAAATCTGTTTCAAGA----C--TAA-CAGGCA----TCTCTCTGTACA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2079253 450 -   2193130 CCTTTTATACACCTGGCCTCC-AAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACGTTGTTTCCCACAGTCATTT-TG-GTATTGTCAAAGGGGAAGTTGTTTCCTAAAG-ATTATGAATCTTTTGAAAGTAAAGGTTTAATCTG-----TTGCTTAATTGTAGTTTACTCATAGAAAT-TTGTTTTCGATAAAAGGAAG----CCCATCTCATCATCTGCGTCATTCCTGCTCTGACCATCTTCTGATTATGTG--ATAGTTCCTGGTGA-CCAGGGAGGCTGAGGA-AGTTCTTTCTACCCAGCCTCATTCTTT-GGTTGTATGTCAGT-------------------------------------TGGCAAGTGTATGCAGGG----AGAATCATGATGCTGATATGTTCATGAAGACAAAATGAATCCATGCTCATGCTCAAGACTGTTCAACCACC--AATCTGATTCAAGA----C--TAA-CAGGCATC--TCTCTCTGTACA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30136973 452 -  77216781 CCTTTTATACACCTGGCCTCC-AAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACATTGTTTTCTATAGTCAGTC-TG-GGACTGTCAAAGGGGAAGTTGTTTCCTAAAG-ATTATGAATCTTTTGAAAGTAAGGGTTTAATATG-----TCTCTTAATTGT-GTTTACTCATAGAAACTTTGTTTCAGATAAAAGGAAG----CCTGTCTCATCATCAGCATCGTTTCTGCTCTGACCATCTTCTCATTATGTG--TTTGTTCCTGGTGA-CTGGGGAGGTTCAGGA-AGTTCTCTCTACCCAGCCTCTTTCTTT-GGCTATACCTAGGT-------------------------------------TGGTAAGTGTCTGTGGGG----AGAAGCGCAATGCTGATATGTTCACAATGACAAAATGAATCCATACCTGTGCTCAAGACTGTTCAGCCACCAAAATCTGATTCAGGA----C--TAA-CAGGCATC--TCTCTCTGTACA
i rheMac8.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106433 452 +  10377808 CCTTTTATACACCTGGCCTCC-AAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACATTGTTTTCTATAGTCAGTC-TG-GGACTGTCAAAGGGGAAGTTGTTTCCTAAAG-ATTATGAATCTTTTGAAAGTAAGGGTTTAATATG-----TCTCTTAATTGT-GTTTACTCATAGAAACTTTGTTTCAGATAAAAGGAAG----CCTGTCTCATCATCAGCATCGTTTCTGCTCTGACCATCTTCTCATTATGTG--TTTGTTCCTGGTGA-CTGGGGAGGTTCAGGA-AGTTCTCTCTACCCAGCCTCTTTCTTT-GGCTATACCTAGGT-------------------------------------TGGTAAGTGTCTGTGGGG----AGAAGCGCAATGCTGATATGTTCACAATGACAAAATGAATCCATACCTGTGCTCAAGACTGTTCAGCCACCAAAATCTGATTCAAGA----C--TAA-CAGGCATC--TCTCTCTGTACA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1991707 452 -   8458610 CCTTTTATACACCTGGCCTCC-AAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACGTTGTTTTCTATAGTCAGTC-TG-GGACTGTCAAAGGGGAAGTTGTTTCCTAAAG-ATTATGAATCTTTTGAAAGTAAGGGTTTAATATG-----TCTCTTAATTGT-GTTTACTCATAGAAACTTTGTTTCAGATAAAAGGAAG----CCTGTCTCATCATCAGCATCGTTTCTGCTCTGACCATCTTCTCATTATGTG--TTTGTTCCTGGTGA-CTGGGGAGGTTCAGGA-AGTTCTCTCTACCTAGCCTCTTTCTTT-GGCTATACCTAGGT-------------------------------------TGGTAAGTGTCTTTGGGG----AGAAGTGCAATGCTGATATGTTCACAATGACAGAATGAATCCATACCTGTGCTCAAGACTGTTCAGCCACCAAAATCTGATTCAAGA----C--TAA-CAGGCATC--TCTCTCTGTACA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936332 452 +  75148670 CCTTTTATACACCTGGCCTCC-AAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACATTGTTTTCTATAGTCAGTT-TG-GGACTGTCAAAGGGGAAGTTGTTTCCTAAAG-ATTATGAATCTTTTTAAAGTAAGGGTTTAATATG-----TCTCTTAATTGT-GTTTACTCATAGAAACTTTGTTTCAGATAAAAGGAAA----CCTGTCTCATCATCAGCATCGTTTCTGCTCTGACCATCTTCTCATTATGTG--TTTGTTCCTGGTGA-CTGGGGAGGTTCAGGA-AGTTCTCTCTACCTAGCCTCTTTCTTT-GGCTATACCTAGGT-------------------------------------TGGTAAGTGTCTGTGGGG----AGAAGCATGATGTTGATATATTCACAGTGGTGAATTGAATCCATGCTTGGGACCAAGACTGTTCACCTACCGAAGTTTGATTCAAGG----T--TAA-CAGGCATC--TCTCTATGTACG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2176055 452 +   4244037 CCTTTTATACACCTGGCCTCC-AAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACATTGTTTTCTATAGTCAGTC-TG-GGACTGTCAAAGGGGAAGTTGTTTCCTAAAG-ATTATGAATCTTTTGAAAGTAAGGGTTTAATATG-----TCTCTTAATTGT-GTTTACTCATAGAAACTTTGTTTCAGATAAAAGGAAG----CCTGTCTCATCATCAGCATCGTTTCTGCTCTGACCATCTTCTCATTATGTG--TTTGTTCCTGGTGA-CTGGGGAGGTTCAGGA-AGTTCTCTCTACCTAGCCTCTTTCTTT-GGCTATACCTAGGT-------------------------------------TGGTAAGTGTCTGTGGGG----AGAAGTGCGATGCTGATATGTTCACAATGACAGAATGAATCCATACCTGTGCTCAAGACTGTTCAGCCACCAAAATCTGATTCAAGA----C--TAA-CAGGCATC--TCTCTCTGTACA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2199052 452 +   4569836 CGTTTTATACACCTGGCCTCC-AAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACATTGTTTTCTATAGTCAGTA-TG-AGACTGTCAAGGGGGAAGTTGTTTCCTAAAG-ATTATGAATCTTTTGAAAGTAAGGGTTTAATATG-----TCTCTTAATTGT-GTTTACTCATAGAAACTTTGTTTCAGATAAAAGGAAG----CCTATCTCATCATCAGCATCGTTTCTGCTCTGACCATCTTCTCATTATGTG--TTAGTTCCTGGTGA-CTGGGGAGGTTCAGGA-AGTTCTCTCTACCCAACCTCTTTCTTT-GGCTATACATAGGT-------------------------------------TGGTAAGTGTCTGTGGGG----AGAAGTGCGATGCTGATATGTTCACAATGACAAAATGAATCCATGCCTGTGCTCAAGACTGTTCAGCCACCAAAATCTGATTCTAGA----C--TAA-CAGGCATC--TCTCTCTGTACA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1863385 447 +   3513951 CCTTTTATACATCGGGCCTCC-AACGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACATTGTTTTCCACAGTCCGTT-TG-GGATTGTCAAAGGGGAAGTTGTTTCTGAAAT-CTTATGAATCTTTTGAAGGTAAGGGTTTAATCTG-----TTTCTTAATCGTGAATTACTCACAGAATCTTTCTTTCAGATAAAAGGAAG----CCCGTGTCATCATCAGCATGATTCCTGCTCTGACCGTCTTCTGGTCATGTG--ATAGTTCCTGGTGA-CTGGGGAGACTC---A-AGTTCTCTCTGCC-AACCTCCTTCTTT-GGCTGTATGTAGAT-------------------------------------TGGGAAGTGTCTGCAGGG----AAAAGTGTGATGCTTATATTTTTACAGTGACCAAAGAAACCCATGTGTGCGCCCAAAACTGCTCAGCCACCAAAGTCTGATTCAAGG----C--TAA-CAGGCA----TCTCTCTGTAGA
i saiBol1.JH378271          T 18209 C 0
s cebCap1.NW_016107730v1     1909003 447 +   1920343 CATTTTATACATCTGGCCTCC-GAAGTTCCCACCAATCAGCAGGACTTTTCCTTGTTGTTGTTTACATTGTTTTCCACAGTCCTTT-TG-GGATTGTCAAAGGGAAAGTTGTTTTTGAAAT-CTTATGAATCTTCTGAAAGCAAGGGTTTAATCTG-----TTTCTTAATTGTGAATTACTCACAGAAACTTTGTTTCAGATAAAAGGAAG----CCCGTGCCATCATCAGCATGGTTCCTGCTCTGACCATCTTCTGGTCATGTG--ATAGTTCCTGGTGA-CTGAGGAGGCTC---A-AGTTCTCTCTACC-AACCTCCTTCCTT-GGCTGTATGTAGAT-------------------------------------TGGGAAGTGTCTGCGGGG----AAAAGTGTGATGCTCACATTTTTACAGTGACCAAAGGAACCCATGTCTGTGCCCAAAACTGCTCAGCCACCAAAGTCTGATTCAAGT----C--TAA-CAGGCA----TCTCCCTGTAGA
i cebCap1.NW_016107730v1    C 0 C 0
s otoGar3.GL873537          22854702 454 +  28711273 CCTTTTATACACGGGGCCTCC-AAAGTTTGGACCAATGGACAGAATTTTTCCTTATTATTGTTGACACTGTTTTCCATAATTACCAGCT-GAATTAAGAAGGAGGAAGTTGTTTCCTAAGG-GTTAAAACTCTTTCAATAGTAAGTGTTTAATCTG-----TTTCTTAATTGAGAATCACTCATTGAAAC-TTCTTTCAGGTAAAAGGAAG----GTGCTCACATCATCAGCATCGTTCCTGCTCTGGTCACCATCTGCTCATGTG--CTAGTTCCTG----------------------------------TCCACCTCTTCCTGT-GGCTGTGTGCAGTCCATTAGAAAAAGGATGATAGTAACAAAATAATAAACATGGGATGCATTTGTGGGA----AGGAGCTTGGTGCTAATATGTTCACAGTGATGAATTGAATGCATGCCTGGGTCCAAGTCTCTTCACCCACAACAGCCCAATTCAAGA----C--TAA-CAGGAA------TCTCTGTACA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22127011 441 - 122082543 TCTTTTATACATCAGCTCATC-CAGGTTTGGACCAATGA-CAG---TTTTCCTTCTTC---TTTACACTGCTTTCCATATTAAAAG-TT-TATTTATCAAAGAAGAAGTTGTTCCTTAG-----TAGGAATCTTTTAAAAT---GTATTTAATTTGTTTGTTTTCTTTTCTGGGAGTAACTCACAAGACCTT--TTTCAGATAAAAGGAAAGAGTCACGTGT-ACCATCAACCTCATCACAGCTCAGAGTATCTTGTGGTAATGGG--TTTGCGCCTCAAGG-CAGAGAGGGTAGGGAG-AGTGTTGCTTCTATAGCGTTCTTCCTT-TGTTTGGCTTTGAT-------------------------------------TGGGAGGTAGCTATGGAG----AAGGATGAGAGAGTGCTATGCTCACATCAATTAGCTGA----ATGCCTAGCTCCTTGTCTGTTCATCTAC-AAAACCTACCTCCAGA----T--GGGTCAGGAGTG--TGCTTTTGTACC
i mm10.chr11                C 0 C 0
s canFam3.chr9              21480294 459 +  61074082 GCTTTTATACACTGGACCTCCTGACATTTGGACCAATGGGCACGACG-TTCCTTGTTGTTGTTTAAATAATTTTCAATAATCACTGAGG-GAAGTGTAAAAGAGGAAGTTGTT-CCGAAAT-GTTATGAATCCTTAGGAAATAATTGCTT-ATTTG-----CTTCTTAATTGAGAATAACTCATAGAAACAT--TCTCAGAAGGAAGGAAG----GTGGTCACATCAGCAGCCTTGTTCTTGCTTCAGGGACCATGGGATCATGTGCTCTAGTTTCTGCTGG-CCTGAGGAGTGTCAGC-AGTGGTCCTTCCCCAGCTCTGGTCTCTGGGTTGTCTGTAGAT---------------------------------------GGAAATGTCCCTGGGGGAGTGGGGACATGAGGTCCCTCTGTTCACAGGGAGCACCGGAATCCATGCCTGAGCCCAAGTCAGTCTCCCCAC-AAAGCCTGATGGGAGACACCC--TGA-T-GGCATCTGCTTCTTGGAGCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            492100 440 -    852752 TCTTTTATACCCTGGGCCCCC-AATCTTT-GACCAATCAGCAGGTCTTTTCCTTATTATTG---ACATGGTTTTCCGTAGATAATA-GGCAAATTACCAAGGAAGATGTTTTTCCCCGAAGTATTATGAATTTTTCAAA-----GTATTTAATCAT-----TTTCTTAATTG--AGCTATGTATAGAAAC-TTCTCACAGTTATGAGAAAG----GTGGTCATATCCTCAGCATCATTCCTG-TCCCATCATCATCT-GTCATGTG--ATAGTTCCTGGTGGCCTAGGGAGGCTCTTTACAGTTGTTGCTCCCCAGCTTGGTTCTTTTGGCTGTACGTAGAT-------------------------------------TGGCAAGTACACCTCAGG----GAGTGCATGAT-CTGATATGCTCCCAGTGACAAATTAGATCCCTGCCGGCGTCCAATTTTGTTCAACCACAGAAGACCGATTCCAGG----CTATAA-CAGGCATT--TATTTTC-----
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7022338 1146 -   7032639 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576   0 -  80997621 C

a score=498004.000000
s hg38.chr17_JH159148v1_alt    31937 59 +     88070 ACCCACACCACCTGTGTCTTTCACCTCCATCAAAGTCACTTGGGAAAAGGGTGATTGGT
s panTro5.chr17             16343042 59 +  83181570 ACCCACACCACCTGTGTCTTTCAGCTTCATCAAAGTCACTTGGGAAAAGGGTGATTGGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247664 59 +  83442489 ACCCACACCACCTGTGTCTTTCAGCTTCATCAAAGTCACTTGGGAAAAGGGTGATTGGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4094600 59 +   4267968 ACCCACACCACAGGTGTCTTTCAGCTTCATCAAAGTCACTTGGGAAAAGGGTGATTGGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2079703 59 -   2193130 ACCCACACCACCTGTGTCTTTCAGCTCCATCAAAGTCACTTGGGAAAAGGGTGATTGGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30137425 59 -  77216781 ACCCACACCACCTGCGTCTTTCAGTTCCCTCAAAGTCACTTGGGAAGAGGGTGATTGGT
i rheMac8.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106885 59 +  10377808 ACCCACACCACCTGTGTCTTTCAGTTCCCTCAAAGTCACTTGGGAAGAGGGTGATTGGT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992159 59 -   8458610 ACCCACACCACCTGTGTCTTTCGGTTCCCTCAAAGTCACTTGGGAAGAGGGTGATTGGT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936784 59 +  75148670 ACCTACTTTACCTGTCTCTTCCAGTTCTACAAAAGCCACTTGGGAAGAGGGTGTTCGGC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2176507 59 +   4244037 ACCCACACCACCTGTGTCTTTCAGTTCCCTCAAAGTCACTTGAGAAGAGGGTGATTGGT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2199504 59 +   4569836 ACCCACACCACCTGTGTCTTTCAGTTCCCTCAAAGTCACTTGGGAAGAGGGTGATTGGT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1863832 59 +   3513951 ACACACACCACCTGTGTCTTTCAGTTCCATCAAAATCACTTGGGAAGAGGGTGTTTGGC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1909450 59 +   1920343 ACACACACCACCTGTGTCTTTCAGTTCCACCAAAATCACTTGGGAAGAGGGTGTTTGGC
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7023484 59 -   7032639 ACACACACCACCTGTGTCTTTCAGTTCCATCAAAATCACTTGGGAAGAGGGTGTTTGGC
i aotNan1.NW_018502359v1    I 1146 C 0
s otoGar3.GL873537          22855156 58 +  28711273 ACCTACTCTTCTTGTGTCTCCTGGTTCTGTCAAAAACA-GCAGGAGGTGGGTGCTTGGC
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22127452 56 - 122082543 ---GGCTCTACTACTGGGTACCACTTGTGTCAAGTACACTTGGGGACATGGTATTCGGt
i mm10.chr11                C 0 I 7088
s canFam3.chr9              21480753 58 +  61074082 CCCTACCCCATCTGCATATCCCAATTCCATCAAGGAC-CTTGGCCCAACGATGTCTGGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            492540 30 -    852752 -----------------------------TCAAAGATATTTGGGTAGAGGATGTTTGGC
i dasNov3.JH570468          C 0 C 0
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576  0 -  80997621 C

a score=256319.000000
s hg38.chr17_JH159148v1_alt    31996 36 +     88070 ACAGTGTGTTCTATGTGTCAGAGCAGAACCAGAGCA
s panTro5.chr17             16343101 36 +  83181570 ACAGTGTGTTCTATGTGGCAGAGCAGAACCAGAGCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247723 36 +  83442489 ACAGTGTGTTCTATGTGGCAGAGCAGAACCAGAGCA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4094659 36 +   4267968 ACAGTGTGTTCTATGTGGCGGAGCAGAACCAGAGCA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2079762 36 -   2193130 AGAGTGTGTTCTATGTGGCAGAGCAGAACCAAAGCA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30137484 35 -  77216781 AC-GTGCATTCTGTGTGTCAGAGCAGAATCAAAGCA
i rheMac8.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106944 35 +  10377808 AC-GTGCATTCTGTGTGTCAGGGCAGAATCAAAGCA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992218 35 -   8458610 AC-GTGCATTCTGTGTATCAGAGCAGAATCAAAGCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936843 36 +  75148670 ACAATGTGTTCCATGTGGCAGAGCAGAGCCAAAGCA
i chlSab2.chr16             C 0 I 30657
s manLeu1.NW_012106252v1     2176566 35 +   4244037 AC-GTGCATTCTGTGTGTCAGAGCAGAATCAAAGCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2199563 35 +   4569836 AT-GTGCTTTCTGTGTGTCAGAGCAGAATCGAAGCA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1863891 36 +   3513951 ACAGTGTGTTCTATGTGGCAGAGCAGAATCAAAGTC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1909509 36 +   1920343 ACCGTGTGTTCTATGTGGCAGAGAAGAATTGAAGCA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7023543 36 -   7032639 ACAGTGTGTTCTATGTGACAGAGCAGAATGGAAGTA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22855214 25 +  28711273 ATGGGGTGTTTGATATGGCAGAGCA-----------
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22134596 34 - 122082543 ACCATATGCTCCATAT--CAGGGTAGACTTAGAGGA
i mm10.chr11                I 7088 I 4
s canFam3.chr9              21480811 36 +  61074082 ATCTTATCTTCCAAATGGCTAGGCAGAACCGAAGCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            492570 36 -    852752 ATAATCTCTTCCACATGGCAAATCAAAAACAAAACA
i dasNov3.JH570468          C 0 C 0
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576  0 -  80997621 C

a score=262914.000000
s hg38.chr17_JH159148v1_alt    32032 37 +     88070 GGTGGGTACGAGGAGAAGTCC-AGTGGGATTTAGATAG
s panTro5.chr17             16343137 34 +  83181570 GGTGGGTAC---GAGAAGTCC-AGTGGGATTTAGATAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247759 34 +  83442489 GATGGGTAC---GAGAAGTCC-AGTGGGATTTAGATAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4094695 37 +   4267968 GGTGGGTACGAGGAGAAGTCC-AGTGGGATTTAGATAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2079798 37 -   2193130 GGTGGGTACAAGGAGAAGTCC-AGTGGGCTTTAGATAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30137519 37 -  77216781 GGTGGGTACAAGGAGAAGTCC-AGTGGGATTTAGATAG
i rheMac8.chr16             C 0 T 2247
s macNem1.NW_012014910v1     2106979 37 +  10377808 GGTGGGTACAAGGAGAAGTCC-AGTGGGATTTAGATAG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992253 37 -   8458610 GGTGGGTACAAGGAGAAGTCC-AGTGGGATTTAGATAG
i cerAty1.NW_012006043v1    C 0 I 180
s chlSab2.chr16             64967536 35 +  75148670 AGTGGATGCA--GAGAATTCC-ACTGGGATTTAGAGAG
i chlSab2.chr16             I 30657 C 0
s manLeu1.NW_012106252v1     2176601 37 +   4244037 GGTGGGTACAAGGAGAAGTCC-AGTGGGATTTAGATAG
i manLeu1.NW_012106252v1    C 0 I 176
s colAng1.NW_012122154v1     2199598 34 +   4569836 GGTGGGTACA---AGAAGTCC-AGTGGGATTTAGATAG
i colAng1.NW_012122154v1    C 0 I 180
s saiBol1.JH378271           1863927 37 +   3513951 GGTGGGTACAAAAAGAAGTCA-ACTGGGACTTAGACAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1909545 37 +   1920343 GGTGGGAACAAGGAGAAGTCC-ACTGGGATTCAGATAG
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7023579 37 -   7032639 GATGGGTACAAAGAGAAGTCC-GCTGGGATTTAGATAG
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22855239 33 +  28711273 ----GGTGCAGAGAAAGGTGC-ATGAGGATTCAGAAAG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22134634 35 - 122082543 TATGGGCATGGTAACATGTCAGAATGAGA---AGATAC
i mm10.chr11                I 4 I 2
s canFam3.chr9              21480847 32 +  61074082 GGTGGGCA-----AAAGCTGC-AACAGCACACAGGGAA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            492606 37 -    852752 AGTGGCTAGAAGAAGAATTAC-CCTGGAATTCACAACG
i dasNov3.JH570468          C 0 C 0
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576  0 -  80997621 C

a score=189808.000000
s hg38.chr17_JH159148v1_alt    32069 45 +     88070 CATCAGGCAATCTTTGCCCtgggttgacca--ttcattctgatttgt
s panTro5.chr17             16343171 45 +  83181570 CATCAGGCAATCTTTGCCCTGGGTTGACCA--TTCATCCTGATTTGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247793 45 +  83442489 CATCAGGCAATCTTTGCCCtgggttgacca--ttcatcctgatttgt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4094732 45 +   4267968 CATCAGGCAATCTTTGCCCTGAGTtgacca--ttcattctgatttgt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2079835 45 -   2193130 CATCAGGCAATCTTTGCCCtggggtgacca--ttcatcctgatttgt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2107016 45 +  10377808 CATCAGGCAATCTTTGCCCtggggtgacca--ttcatcttgatttgt
i macNem1.NW_012014910v1    C 0 C 0
s chlSab2.chr16             64967571 45 +  75148670 CATAAAGCAATCTATCCCCTGGGGCGACCA--TTCGTTCTGACTTAC
i chlSab2.chr16             C 0 C 0
s saiBol1.JH378271           1863964 45 +   3513951 CATCAAGCAAAATTTGCCCtggggtgacca--gtcatcctgatttgt
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1909582 45 +   1920343 CATCAAGCACTCTTTGCCCtggggtgacca--ttcatcctgatttgc
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7023616 45 -   7032639 CGTCAAGCAATCTTTGCCCtggggtgacca--ttcatcctgctttgt
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22855272 45 +  28711273 CATCAAGCAGTCTATTTCCTGgggtgacca--tgaatcctggtttgc
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22134671 37 - 122082543 AAGCATGCAG----------GAGTTCACTGTTTTTTTCCTGATCTTT
i mm10.chr11                I 2 I 51
s canFam3.chr9              21480879 40 +  61074082 ----AAGCAATTATCAACCTGTg-tgacca--gtggtcttgatttag
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            492643 39 -    852752 ----TTTCAATTAACACCCTGGGGT--TCT--GCCATCCTTGTTTCC
i dasNov3.JH570468          C 0 C 0
e manLeu1.NW_012106252v1     2176638 176 +   4244037 I
e calJac3.chr5              46147053 386 - 159171411 T
e colAng1.NW_012122154v1     2199632 180 +   4569836 I
e cerAty1.NW_012006043v1     1992290 180 -   8458610 I
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=371139.000000
s hg38.chr17_JH159148v1_alt    32114 117 +     88070 ctgggagagaggggcttaccataatgaaaatgtgggactttgtgtaacataagtgctttagactcaggcaagccagcatgagct-g-TGGCTCTAGCCCTAACTCTGG-TAGTAGCATAG
s panTro5.chr17             16343216 117 +  83181570 CTGGGAGAGAGGGGCTTACCAGAATGAAAATGTTGGACTTTGTGTAACATAAGTGCTTTAGACTCAGGCAagccagcatgagct-g-tggctctagccctaactgtgg-tactagcatag
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247838 117 +  83442489 ctgggagagaggggcttaccagaatgaaaatgtgggactttgtgtaacataagtgctttagactcaggcaagccagcatgagct-g-TGGCTCTAGCCCTAACTGTGG-TACTAGCATAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4094777 117 +   4267968 ctgggagagaggggcttaccagaatgaaaatgtgggactttgtgtaacataagtgctttagactcaggcaagccagcatgagct-g-TGGCTCTAGCCCTAACTCTGG-TACTAGCATAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2079880 117 -   2193130 cggggagtgaggggcttaccagaatgaaaatgtgggactttctgtaacataagtgctttagattcaggcaaaccagcactagct-g-TGGATCTAGCCCTAACTGTCG-TACTAGCATAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2107061 117 +  10377808 ctgggagtgatgggcttaccaggatgagaatgtgggactttGTGTAACATAACTACTTTAGATTTAGTCAAACCAGCCTGAATT-G-TGGCTCTAGCCCTAACTCTGG-TACTAGCATAG
i macNem1.NW_012014910v1    C 0 C 0
s chlSab2.chr16             64967616 118 +  75148670 CTGTGAGTGTGGTGATTACCAGGATGAGAATGTAGGACTTTCTATCACGTAACTGGTTGAGATTCAGACCAACCAGCATGTGCT-G-TGGCTCTAGCCTTAAACCTAGTTACTAGCACAG
i chlSab2.chr16             C 0 C 0
s saiBol1.JH378271           1864009 117 +   3513951 ctgggagtgaggggcttaccaggaatagaatgtaggactttctatgacataactgctttagattcaggccaaccagcatgagCC-G-TGGCTC-AGCTGTAAGCCTGGTTACCAGGACAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1909627 117 +   1920343 ctgggagtgaggggcttaccaggaatagaatgtaggactttctatgacataactgctttagattcagaccaaccagcatgagca-g-tggctc-agccctaAGCCTGGTTACCAGCACAG
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7023661 117 -   7032639 ctgggagtgaggggcttaccaggaatagaatgtaggactttctatgacataactgCTTTAGATTGAGGCCAACCTGCATGAGCG-G-TGGCTC-AGCCCTAAGCCTGGTTACCAGCACAG
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22855317 112 +  28711273 ccaggactgaggggtttcctcgg------atgtgggactttcagtaattt-actaggacagttgtggagaagctgagatgaatc-gatgactctaATCCTAACCCTGCTCACCAGCAGAG
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              21480919 108 +  61074082 tcagaattgtgggctttcccagc------atgtggatctttcactgatat-gctggggta-atttgggcaaagcacaatgaCCTCA-TGACTC-AACCCTAACTCAT--TTTTAACATAT
i canFam3.chr9              C 0 I 3
s dasNov3.JH570468            492682 107 -    852752 CCCAGGGCTCTGGGTTCCCCACA------ATGTGGGGCTTTGGTGATCATACTTGGACTGG-TTCAGGCAACCCAG-ATGAGAT-T-CCAGTCTAGTCCTGACCTGAG-TCCTACCGC--
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22134708  51 - 122082543 I
e manLeu1.NW_012106252v1     2176638 176 +   4244037 I
e calJac3.chr5              46147053 386 - 159171411 T
e colAng1.NW_012122154v1     2199632 180 +   4569836 I
e cerAty1.NW_012006043v1     1992290 180 -   8458610 I
e macFas5.chr16             28049576   0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=29276.000000
s hg38.chr17_JH159148v1_alt    32231 15 +     88070 TCAG--------------------TGCCATTTCTT--
s panTro5.chr17             16343333 15 +  83181570 tcag--------------------tgccatgtctt--
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247955 15 +  83442489 TCAG--------------------TGCCATGTCTT--
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4094894 15 +   4267968 TCAG--------------------TGCCATTTCTT--
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2079997 15 -   2193130 TCAG--------------------TGCCATTTCTT--
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2107178 15 +  10377808 TCAG--------------------TGCCATTTCTT--
i macNem1.NW_012014910v1    C 0 C 0
s chlSab2.chr16             64967734 14 +  75148670 TTAG--------------------CGTCATCTCT---
i chlSab2.chr16             C 0 C 0
s saiBol1.JH378271           1864126 15 +   3513951 TCAG--------------------CGCCATTTCTT--
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1909744 15 +   1920343 TCAG--------------------TGCCATTTCTT--
i cebCap1.NW_016107730v1    C 0 I 13
s aotNan1.NW_018502359v1     7023778 13 -   7032639 TCAG--------------------TGCCATTTC----
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22855429 35 +  28711273 TCAGAGGTTTCAGGACACTGACTATGCATtttcct--
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22134759 15 - 122082543 TCAT--------------------TTTGCTATCCT--
i mm10.chr11                I 51 C 0
s canFam3.chr9              21481030 15 +  61074082 TTTA--------------------CTTCACGTATG--
i canFam3.chr9              I 3 C 0
s dasNov3.JH570468            492789 15 -    852752 TCAG--------------------TA--ACCTCATGG
i dasNov3.JH570468          C 0 C 0
e manLeu1.NW_012106252v1     2176638 176 +   4244037 I
e calJac3.chr5              46147053 386 - 159171411 T
e colAng1.NW_012122154v1     2199632 180 +   4569836 I
e cerAty1.NW_012006043v1     1992290 180 -   8458610 I
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=1158.000000
s hg38.chr17_JH159148v1_alt    32246 3 +     88070 --TTC
s panTro5.chr17             16343348 3 +  83181570 --ctc
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247970 3 +  83442489 --CTC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4094909 3 +   4267968 --CTC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080012 3 -   2193130 --CTC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2107193 3 +  10377808 --CTC
i macNem1.NW_012014910v1    C 0 C 0
s otoGar3.GL873537          22855464 3 +  28711273 --ttt
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22134774 3 - 122082543 --TTC
i mm10.chr11                C 0 C 0
s canFam3.chr9              21481045 3 +  61074082 --CAC
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            492804 3 -    852752 GAC--
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7023791 0 -   7032639 C
e cebCap1.NW_016107730v1     1909759 13 +   1920343 I
e manLeu1.NW_012106252v1     2176638 176 +   4244037 I
e saiBol1.JH378271           1864141 0 +   3513951 C
e calJac3.chr5              46147053 386 - 159171411 T
e colAng1.NW_012122154v1     2199632 180 +   4569836 I
e chlSab2.chr16             64967748 0 +  75148670 C
e cerAty1.NW_012006043v1     1992290 180 -   8458610 I
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=5081.000000
s hg38.chr17_JH159148v1_alt    32249 4 +     88070 TCTA
s panTro5.chr17             16343351 4 +  83181570 tcta
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247973 4 +  83442489 TCTA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4094912 4 +   4267968 TATG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080015 4 -   2193130 TATG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s manLeu1.NW_012106252v1     2176814 4 +   4244037 TCTG
i manLeu1.NW_012106252v1    I 176 C 0
s otoGar3.GL873537          22855467 4 +  28711273 tctc
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22134777 4 - 122082543 TCTA
i mm10.chr11                C 0 I 3
s canFam3.chr9              21481048 4 +  61074082 TATG
i canFam3.chr9              C 0 I 4
s dasNov3.JH570468            492807 4 -    852752 TCAC
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7023791 0 -   7032639 C
e cebCap1.NW_016107730v1     1909759 13 +   1920343 I
e saiBol1.JH378271           1864141 0 +   3513951 C
e calJac3.chr5              46147053 386 - 159171411 T
e colAng1.NW_012122154v1     2199632 180 +   4569836 I
e chlSab2.chr16             64967748 0 +  75148670 C
e cerAty1.NW_012006043v1     1992290 180 -   8458610 I
e macNem1.NW_012014910v1     2107196 0 +  10377808 C
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=40659.000000
s hg38.chr17_JH159148v1_alt    32253 13 +     88070 -------TCTTTCTCCATTT-
s panTro5.chr17             16343355 13 +  83181570 -------tctttctccattt-
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247977 13 +  83442489 -------TCTTTCTCCATTT-
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4094916 13 +   4267968 -------TCTTTCTCCATTT-
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080019 13 -   2193130 -------TCTTTCTCCATTT-
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2107196 13 +  10377808 -------TCTTTCTCCATTT-
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992470 13 -   8458610 -------TCTTTCTCCATTT-
i cerAty1.NW_012006043v1    I 180 C 0
s chlSab2.chr16             64967748 11 +  75148670 ---------TCTCTCCATTT-
i chlSab2.chr16             C 0 T 30604
s manLeu1.NW_012106252v1     2176818 13 +   4244037 -------TCTTTCTCCATTT-
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2199812 13 +   4569836 -------TCTTTCTCCATTT-
i colAng1.NW_012122154v1    I 180 C 0
s saiBol1.JH378271           1864141  8 +   3513951 ------------CTGTATTT-
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7023791 10 -   7032639 ----------TTCTGTATTT-
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22855471 13 +  28711273 -------actcccctccttc-
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22134784 13 - 122082543 -------TCTTTCTCAGTTG-
i mm10.chr11                I 3 C 0
s canFam3.chr9              21481056 10 +  61074082 -------GTTTTCTCCT----
i canFam3.chr9              I 4 I 1
s dasNov3.JH570468            492811 21 -    852752 CCGCACCCCAACCTGCACTTT
i dasNov3.JH570468          C 0 C 0
e cebCap1.NW_016107730v1     1909759 13 +   1920343 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=7397.000000
s hg38.chr17_JH159148v1_alt    32266 1 +     88070 C
s panTro5.chr17             16343368 1 +  83181570 c
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247990 1 +  83442489 C
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4094929 1 +   4267968 C
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080032 1 -   2193130 C
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2107209 1 +  10377808 C
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992483 1 -   8458610 C
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2176831 1 +   4244037 C
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2199825 1 +   4569836 C
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1864149 1 +   3513951 C
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7023801 1 -   7032639 C
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22855484 1 +  28711273 t
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22134797 1 - 122082543 C
i mm10.chr11                C 0 I 1
s dasNov3.JH570468            492832 1 -    852752 C
i dasNov3.JH570468          C 0 C 0
e cebCap1.NW_016107730v1     1909759 13 +   1920343 I
e canFam3.chr9              21481066 1 +  61074082 I
e calJac3.chr5              46147053 386 - 159171411 T
e chlSab2.chr16             64967759 30604 +  75148670 T
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=24495.000000
s hg38.chr17_JH159148v1_alt    32267 3 +     88070 -TTT
s panTro5.chr17             16343369 3 +  83181570 -ttt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247991 3 +  83442489 -TTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4094930 3 +   4267968 -TTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080033 3 -   2193130 -TTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2107210 3 +  10377808 -TTT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992484 3 -   8458610 -TTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937155 3 +  75148670 -TTT
i chlSab2.chr16             T 30604 C 0
s manLeu1.NW_012106252v1     2176832 3 +   4244037 -TTT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2199826 3 +   4569836 -TTT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1864150 3 +   3513951 -TTT
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7023802 3 -   7032639 -TTT
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22855485 3 +  28711273 -ttt
i otoGar3.GL873537          C 0 I 6242
s mm10.chr11                22134799 3 - 122082543 -TTT
i mm10.chr11                I 1 I 3
s canFam3.chr9              21481067 3 +  61074082 -TTT
i canFam3.chr9              I 1 C 0
s dasNov3.JH570468            492833 3 -    852752 ATT-
i dasNov3.JH570468          C 0 C 0
e cebCap1.NW_016107730v1     1909759 13 +   1920343 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=3162.000000
s hg38.chr17_JH159148v1_alt    32270 2 +     88070 TT
s panTro5.chr17             16343372 2 +  83181570 tt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247994 2 +  83442489 TT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4094933 2 +   4267968 TT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080036 2 -   2193130 TT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2107213 2 +  10377808 TT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992487 2 -   8458610 TT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937158 2 +  75148670 TC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2176835 2 +   4244037 TT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2199829 2 +   4569836 TT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1864153 1 +   3513951 T-
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7023805 1 -   7032639 T-
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22861730 2 +  28711273 TC
i otoGar3.GL873537          I 6242 C 0
s mm10.chr11                22134805 2 - 122082543 TC
i mm10.chr11                I 3 I 5
s canFam3.chr9              21481070 2 +  61074082 TT
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            492836 2 -    852752 TT
i dasNov3.JH570468          C 0 C 0
e cebCap1.NW_016107730v1     1909759 13 +   1920343 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=1266795.000000
s hg38.chr17_JH159148v1_alt    32272 212 +     88070 AATGAAGAAAT-TAGATGAGTTGAGATGATAGCTGATTCGTCTTGGAGTTCTAACATATT-AAAACATTTTTTA---GGTATACCATTCATTTCAGAAGAA-TGCAAATT-AT-TAATTTCCAACTTGTTATA-----ACTTT-----GTAAATAAAGCTATGTCCCCATTACCAGGTTAGGAAATAGAAATTAATCCCATTCCCTTTAAATTATATTCCT--TTACTCATC
s panTro5.chr17             16343374 211 +  83181570 aatgaaggaat-tagatgatttgagatgatagctgatgtgtcttggagttctaacatatt-aagac-tttTTTA---GGTATACCATTCTTTTCAGAAGAA-TGTAAATT-AT-TAATTTCCAACTTGTTATA-----ACTTT-----GTAAATACAGCTATGTCCCCATTACCAGGTTAGGAAATAGAAATTAATCCCATTCCCTTTAAATTATATTCCC--TTACTCATC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16247996 212 +  83442489 AATGAAGGAAT-TAGATGATTTGAGATGATAGCTGATGTGTCTTGGAGTTCTAACATATT-AAAACATTTTTTA---GGTATACCATTCATTTCAGAAGAA-TGTAAATT-AT-TAATTTCCAACTTGTTATA-----ACTTT-----GTAAATACAGCTATGTCCCCATTACCAGGTTAGGAAATAGAAATTAATCCCATTCCCTTTAAATTATATTCCC--TTACTCATC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4094935 211 +   4267968 AATGAAGGAAT-TAGATGATTTGAGATGATAGCTGATTCGTCTTGGAGTTCTAACATATT-AAAAC-ATTTTTA---GGTATACCATTCATTTCAGAAGAA-TGCAAATT-AT-TAATTTCCAACTTGTTATA-----ACTTT-----GTAAATACAGCTATGTCCCCATTACCAGGTTAGGAAATAGAAATTAATCCCATTCCCTTTAAATTATATTCAC--TTACTCATC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080038 212 -   2193130 AATGAAGGAAT-TAGATGAGTTGAGATGATAGCTGATTCGTCTTGGAGTTCTAACATATT-AAAGCATTTTTTA---GGTACACCATTCATTTCGGAAGAA-TGCCAATT-AT-TAATTTCCAACTTGATATA-----ATTTT-----GTTAATACATCTATGCTCCCATTATCAGGTTAGGAAATAGAAATTAATCCAATTCCCTTTAAATTATATTCCT--TTACTCATC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2107215 202 +  10377808 AATGAAGGAAT-TAGATGAGTTGAGATGATATCTGATTCGTCTTGGAGTTCCAACATATT-AAAACATTGTTTA---GGTGCACCATTCATTTTGGAAGAA-TGCAAATT-AT-TAATTCCCAATTTGATATA-----ACTTT-----GTAAATACATCTATGTTCCCATTACTGGGTTATGAAATAGAAATTAATCCCATTCCCTTTCAG------------TTACTCATC
i macNem1.NW_012014910v1    C 0 I 1
s cerAty1.NW_012006043v1     1992489 202 -   8458610 AATGAAGGAAT-TAGATGAGTTGAGATGATATCTGATTCGTCTTGGAGTTCTAACATATT-AAAACATTGTTTA---GGTGCACCATTCATTTTGGAAGAA-TGCAAATT-AT-TAATTCCCAATTTGATATA-----ACTTT-----GTAAATACATCTATGTTCCCATTACCGGGTTACGAAATAGAAATTAATCCCATTCCCTTTCAG------------TTACTCATC
i cerAty1.NW_012006043v1    C 0 I 1
s chlSab2.chr16             64937160 217 +  75148670 AATGAGGGAAT-TAGATGCGTTGAGATGATATCTGATTCCTCTTTGAGGTCTACCGTGTT-TAAAACTTTTTAA---ATTATACCATTCATTTCAGAAGAA-TGCAAATT-AT-TAATTTCCAGCTTGATACAATATTACATT-----GTAAATACATCTAAGTCCCCATGACCAGTTTACAAAACAGAAATTAATTCCATTCCATCCAAATTATATCTTT--TTACTCATC
i chlSab2.chr16             C 0 I 11654
s manLeu1.NW_012106252v1     2176837 202 +   4244037 AATGAAGGAAT-TAGATGAGTTGAGATGATATCTGATTCGTCTTGGAGTTCTAACATATT-AAAACATTGTTTA---GATGCACCATTCATTTTGGAAGAA-TGCAAATT-AT-TAATTCCCAATTTGATATA-----ACTTT-----GTAAATACATCTATGTTCCCATTACCGGGTTACGAAATAGAAATTAATCCCATTCCCTTTCAG------------TTACTCATC
i manLeu1.NW_012106252v1    C 0 I 1
s colAng1.NW_012122154v1     2199831 202 +   4569836 AATGAAGGAAT-TAGATGAGTTGAGATGATATCTGATTCGTCTTGGAGTTCTAATATATT-AAAACATTGTTTA---GAAGCACCATTCATTTTGGAAGAA-TGCAAATT-AT-TAATTCCCAATTTGATATA-----ACTTT-----GTAAATACATCTATGTTCCCATTAGCGGGTTACGAAATAGAAATTAATCCCATTCCCTTTCAG------------TTACTCATC
i colAng1.NW_012122154v1    C 0 I 1
s saiBol1.JH378271           1864154 212 +   3513951 AATGCAGGAAT-TAGGTGAGTTGAGATGACCCCTGATTCGTCTTGGAGTTCCAACATATT-TAAACATTTTTGA---GGTACACAATTTATTTAGGAAGAA-TGCAAATT-AT-GAATTTCCAACTTAAGATA-----ACTTT-----GTAAATACATCTTTGATCCCATTACCAGGTTAGGAAACAGAAATTAATCCCATTGCCTTTAGATTATATTCTC--TTACTCATT
i saiBol1.JH378271          C 0 I 2
s cebCap1.NW_016107730v1     1909772 212 +   1920343 AATGAAGGAAT-TAGGTGAGTTGAGATGACACCTGATTCATCTTGGAGTTCCAACATATT-TAAACAGTTTTTA---GGTACACAATTCATTTAGGAAGAA-TGCAAATT-AT-GAATTTCCAACTTGAGATA-----ACCTC-----GTAAATACATCTGTGATTCCATTACCAGGTTACGAAACAGAAATTAATCCCATTGCCTTTAGATTATATTCTC--TGACTCATT
i cebCap1.NW_016107730v1    I 13 I 2
s aotNan1.NW_018502359v1     7023806 212 -   7032639 AATGAAGGAAT-TAGGTGAGTTGAGAATACATCTAATTCTTTTTGGAATTTTAACATATT-TATACATTTTTCA---GGTACACAATTCATTTAGGAAGAA-TGCAAATT-AT-GAATTTCCAACTTGAGATA-----ACTTT-----GTAAATACATCTGTGATCCCACTACCAGGTTAGGAAACAGAAATTAATCCCATTCCCTTTAGATTATATTCTC--TTACTCATT
i aotNan1.NW_018502359v1    C 0 I 2
s otoGar3.GL873537          22861732 218 +  28711273 AATGAGGGAAT-TAGATTAGTTGCAGTGATACCTGATTTGCCTTTGTGATCTAACATATT---AACATTTTGGGGGTGGTATACCACTTTTTAAAAAAGAAGCGCAAATTAAC-TAATTTCCAGCTATAGAGA-----ATATCACAAAGTGAATACATCCCTGTCACTATAACCAAGTTAGG--ATGTAAATTAATTCCCCTCCTTCCAAATTACATCCTC--TTACTCATC
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22134812 213 - 122082543 AAAGATGGGTTAAAAATAAGTTGAAATGGTTCCTAATTTGTTTGTGGCGGCAAATGTATTTAAAACATTTGGAA---GATCTACTGTACATATTGAAAGAG--ACAAGCT-ATGTTATGGTGGAAAGGATATG-----ACAAA-----ATAAACATGCCAGTCTCATTACTAATCAGGTAAGAAGTACAAATTTATCTAATT-TTTACAAACAATACCCTC--TCACTATTT
i mm10.chr11                I 5 C 0
s canFam3.chr9              21481072 170 +  61074082 ------------------AATTGAAGGGGTA--------GTCTTGGTG-------ATAGT-GCTCCTTTTTATA---AAT-TATAATACATT-------AA-----AATC-GA-TAATTTCAAATCTGATAGA-----ATATCACCGAGTGAACCC--CCATGTCGCTATTACCAGGTTAACAAAAAGAACTTAATTTAATCCCCTTCAAATTATAATCCTTATTATTC---
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            492838 156 -    852752 CATGAATGAAT-GAGATTA---GATCTTATATTTGAAGTTTCTTTGAAGTCTAACATATT------------------------------------------TTTAACTC-AT---ATTTCCCA--------A-----A---------GATAAAACATCCATGTCTCTGTTATCAGGTTAATAAACAGAATTTAACCCTACTGTGTTCAA--TATACTATC--ACCCTCATC
i dasNov3.JH570468          C 0 C 0
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576   0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=37767.000000
s hg38.chr17_JH159148v1_alt    32484 5 +     88070 CC-AAA
s panTro5.chr17             16343585 5 +  83181570 CC-AAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16248208 5 +  83442489 CC-AAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4095146 6 +   4267968 CCAAAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080250 5 -   2193130 CC-AAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2107418 5 +  10377808 CC-CAA
i macNem1.NW_012014910v1    I 1 C 0
s cerAty1.NW_012006043v1     1992692 5 -   8458610 CC-CAA
i cerAty1.NW_012006043v1    I 1 C 0
s chlSab2.chr16             64949031 5 +  75148670 CC-CAA
i chlSab2.chr16             I 11654 C 0
s manLeu1.NW_012106252v1     2177040 5 +   4244037 CC-CAA
i manLeu1.NW_012106252v1    I 1 C 0
s colAng1.NW_012122154v1     2200034 5 +   4569836 CC-CAA
i colAng1.NW_012122154v1    I 1 C 0
s saiBol1.JH378271           1864368 5 +   3513951 CC-AAA
i saiBol1.JH378271          I 2 C 0
s cebCap1.NW_016107730v1     1909986 5 +   1920343 CC-AAA
i cebCap1.NW_016107730v1    I 2 C 0
s aotNan1.NW_018502359v1     7024020 5 -   7032639 CC-AAA
i aotNan1.NW_018502359v1    I 2 C 0
s otoGar3.GL873537          22861950 5 +  28711273 CC-AAT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22135025 5 - 122082543 CT-CAA
i mm10.chr11                C 0 C 0
s canFam3.chr9              21481242 5 +  61074082 CC-AAA
i canFam3.chr9              C 0 I 9850
s dasNov3.JH570468            492994 5 -    852752 CC-CAA
i dasNov3.JH570468          C 0 C 0
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=514676.000000
s hg38.chr17_JH159148v1_alt    32489 97 +     88070 AAACCACTAA--TCACTC--TATCAAGTTGCAACCCTGTAGGTCAA-TT-TG---GCTATTCCTTTTTTACTTC-GTGTGAATAAAA-ATTATAATATTTGCTTCTCT
s panTro5.chr17             16343590 98 +  83181570 AAACAGCTAA--TCGCTC--TATCAAGTTGTAACCCTGTAGGTCAA-TT-TG---GCTTTTCCTTTTCTGCTTCTGTGTGAATAAAA-ATTATAATATTTGCTTCTCT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16248213 96 +  83442489 AAACAGCTAA--TCGCTC--TATCAAGTTGTAACCCTGTAGGTCAA-TT-TG---GCTTTTCCTTTTCTGCTTC--TGTGAATAAAA-GTTATAATATTTGCTTCTCT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4095152 98 +   4267968 AAACAGCTAA--TCACTC--TATCAAGTTGTAACCCTGTAGGTCAA-TT-TG---GCTTTTCCTTTTCTGCTTCTGTGTGAATAAAA-ATTATAATATTTGCTCCTCT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080255 98 -   2193130 AAACCACTAA--TCACTC--TATCAAGTTGTAACCCTGTAGGTCAA-TT-TG---ACTATTCCTTTTTTACTTCTGTGTGAATAAAA-ATTATAATATTTCCTTCTCT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2107423 96 +  10377808 --ACTGCTCA--TCACTC--TGTCAAGTTGTAACCCTGTAGGTCAA-TT-TG---GCTTTTCCTTTTTTACTTCTGTGCGAATAAAA-ATTATAATATATGTTTCTCT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992697 96 -   8458610 --ACCGCTCA--TCACTC--TGTCAAGTTGTAACCCTGTAGGTCAA-TT-TG---GCTTTTCCTTTTTTACTTCTGTGTGAATAAAA-ATTATAATATATGTTTCTCT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64949036 95 +  75148670 AGACAGCTAA--TCACTC--TGTTATGTTCTAATCCAGTAGGTAACTTT-TG---GCTTTAAA----AAATGTTCATGTAAATAAAA-ATTATAATATTTACTTCTCT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2177045 96 +   4244037 --ACCGCTCA--TCACTC--TGTCAAGTTGTAACCCTGTAGGTCAA-TT-TG---GCTTTTCCTTTTTTACTTCTGTGCGAATAAAA-ATTATAATATATGTTTCTCT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200039 96 +   4569836 --ACTGCTCA--TCACTC--TGTCACGTTGTAACCCTGTAGGTCAA-TT-TG---GCTTTTCCTTTTTTACTTCTGTGTGAATAAAA-ATTATAATATATGTTTCTCT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1864373 99 +   3513951 --ACAGATAA--TCCCTC--TATCAAGTTGTAACACTGTAGTTCAA-TT-TGCCCCCCTCTTTTTTTTTACTTCTGTGTGAACTAAA-ATGAGAATATTTCCTTCTCT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1909991 96 +   1920343 --ACAGATAA--TCCCTC--TATCAAGTTGTAACACTGTAGTTCAA-TT-TG---GCTTTTTCTTTTTTACTTCTGTGTGAATTAAA-ATGAGAATATTTTCTTCTCC
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7024025 98 -   7032639 --ACAGATAATCTCCCTC--TATCAAGTTGTAACACTGTAGTTCAA-TT-TG---ACTTTTTCTTTTTTATTTCTGTGTGAATTAAA-ATGAGAATATTTCCTTCTCT
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22861955 92 +  28711273 AGGTCCCTAA--TCTCTC--TATTGATTTGTAACACTGTAGATACA-TT-TT---GAGGTG--TTTTTGACATTTACGTAAAAGAAA-A----AAAATTCAACTGGCC
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22135030 90 - 122082543 GGAGAGATGA--TCACTTTGTATCAAGTT----TACTTATGGCCAG-TG-AA---GC----CAACTTTGGCGTCTTTGCAAATAAAA-GTTATA--ATTGATTTCTCT
i mm10.chr11                C 0 C 0
s dasNov3.JH570468            492999 90 -    852752 -----GATAA--TCACTG--TACTGACTTGGAA-ATTGCAAATAAG-TTATG---AC----AGTTTTTTACGTTGTTTTAAATGAAATAATGTAAAATTGACTTCTTT
i dasNov3.JH570468          C 0 I 3941
e canFam3.chr9              21481247 9850 +  61074082 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=22592.000000
s hg38.chr17_JH159148v1_alt    32586 3 +     88070 ATT
s panTro5.chr17             16343688 3 +  83181570 ATT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16248309 3 +  83442489 ATT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4095250 3 +   4267968 ATT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080353 3 -   2193130 ATT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2107519 3 +  10377808 GTT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992793 3 -   8458610 GTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64949131 3 +  75148670 ATT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2177141 3 +   4244037 GTT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200135 3 +   4569836 ATT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1864472 3 +   3513951 ATT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1910087 3 +   1920343 ATT
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7024123 3 -   7032639 ATT
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22862047 3 +  28711273 ACT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22135120 3 - 122082543 ATT
i mm10.chr11                C 0 I 10168
e canFam3.chr9              21481247 9850 +  61074082 I
e dasNov3.JH570468            493089 3941 -    852752 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=66547.000000
s hg38.chr17_JH159148v1_alt    32589 10 +     88070 TCTTTTGCAT
s panTro5.chr17             16343691 10 +  83181570 TCTTTTGCAT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16248312 10 +  83442489 TCTTTTGCAT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4095253 10 +   4267968 TCTTTTGCAT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080356 10 -   2193130 TCTGTTGCAT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2107522 10 +  10377808 TCTTTTGCAT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992796 10 -   8458610 TCTTTTGCAT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64949134 10 +  75148670 TCTTTGGCAT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2177144 10 +   4244037 TCTTTTGCAT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200138 10 +   4569836 TCTTTTGCAT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1864475 10 +   3513951 TCCTTTGCAT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1910090 10 +   1920343 TCTCTCACAT
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7024126 10 -   7032639 TCTTTTGCAT
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22862050 10 +  28711273 GTCTTTACAT
i otoGar3.GL873537          C 0 I 5348
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              21481247 9850 +  61074082 I
e dasNov3.JH570468            493089 3941 -    852752 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=59132.000000
s hg38.chr17_JH159148v1_alt    32599 10 +     88070 AATCAGAGGT
s panTro5.chr17             16343701 10 +  83181570 AATCAAAAGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16248322 10 +  83442489 AATCAAAAGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4095263 10 +   4267968 AATCAAAAGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080366 10 -   2193130 AACCAGAGGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2107532 10 +  10377808 AATCACAAGT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992806 10 -   8458610 AATCACAAGT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64949144 10 +  75148670 AATCAAAAGT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2177154 10 +   4244037 AATCACAAGT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200148 10 +   4569836 AATCACAAGT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1864485 10 +   3513951 AATCAAAAGT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1910100 10 +   1920343 AATCAAAAGT
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7024136 10 -   7032639 AATCAAAAGT
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              21481247 9850 +  61074082 I
e dasNov3.JH570468            493089 3941 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=100059.000000
s hg38.chr17_JH159148v1_alt    32609 16 +     88070 AATAATTATTGCCTAG
s panTro5.chr17             16343711 16 +  83181570 AATAATTACTGCCTAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16248332 16 +  83442489 AATAATTATTGCCTAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4095273 16 +   4267968 AGTAATTATTGCCTAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080376 16 -   2193130 Aataattattgcctag
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2107542 16 +  10377808 AATAATTATCACCTAG
i macNem1.NW_012014910v1    C 0 I 308
s cerAty1.NW_012006043v1     1992816 16 -   8458610 AATAATTATCACCTAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64949154 16 +  75148670 AATCCTTATTGCATAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2177164 16 +   4244037 AATAATTATCACCTAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200158 16 +   4569836 AATAattatcgcctag
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1864495 16 +   3513951 AATAGCTATTGCCTAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1910110 16 +   1920343 Aatagttattgccttg
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7024146 16 -   7032639 AATAGTTATTGCCTAG
i aotNan1.NW_018502359v1    C 0 C 0
s canFam3.chr9              39587344 16 -  61074082 AAAAACTGTCACCTAG
i canFam3.chr9              T 2534 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e dasNov3.JH570468            493089 3941 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=719638.000000
s hg38.chr17_JH159148v1_alt    32625 126 +     88070 TCATTTTGCACTCTTCATGTCAGCAGATCAGAAGGCAGAGAAAAGAGTTCCTTTTTGGTGAGGGGTAATTATCCTGTTTTCATGGCATGT--AGGAGAATGTATCTGTAGCTCAGGAGATTT-ACTGAA
s panTro5.chr17             16343727 126 +  83181570 TCATTTTGCACTCTTTATGTCAGCTGTTTAGAAGGCAGAGAACAGGGTTCTTGTTTGTTGAGGGGTAATTATCCTGAAGTGGTAGAATGT--AGGAGAACGTATCTGTAACTCAGGAGATTT-ACTGAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16248348 126 +  83442489 TCATTTTGCACTCTTTATGTCAGCTGTTTAGAAGGCAGAGAACAGGGTTCTTGTTTGTTGAGGGGTAATTATCCTGAAGTGGTAGAATGT--AGGAgaacgtatctgtaactcaggagattt-actgaa
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4095289 126 +   4267968 TCATTTTGCACTCTTTATGTCAGCTGATTAGAAGGCAGAGAACAGGGTTCTTGTTTGTTGAGGGGTAATTATCCTGAAGTCGTAGAACGT--AGGAgaacgtatctgtaactcaggagattt-actgaa
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080392 126 -   2193130 tcattttgcactcttcatgtcagcagatcagaagacagagaaaagagttcctatttggtgaggggtgattatcctgttttcatggcatgt--aggagaatgtatctgtagctcaggagattt-actgaa
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2107866 119 +  10377808 TCATTTTGCACTCTTTATGTCAGCTAAGCAGAAGGCAGAGGACACAG-------TTGGTGAGGGGTAATTATTCTGAAGGCATAGAATGT--Agaagaatgtatctgtagctcgggagattt-actgaa
i macNem1.NW_012014910v1    I 308 C 0
s cerAty1.NW_012006043v1     1992832 119 -   8458610 TCATTTTGCACTCTTTATGTCAGCTAAGCAGAAGGCAGAGGACACAG-------TTGGTGAGGGGTAATTATTCTGAAGGCATAGAATGT--AGGAgaatgtatccgtagctcgggagattt-actgaa
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64949170 126 +  75148670 TCATTTTGGACTCTTCATATCAGGAGAGCAGCAGACAGAGAAAGGAGTTACTATTTGGTGAGGAGTAATTATCCTCAAGCCACATCGTGT--AGGAGAATATATCTATAGCTCAGGAGATTT-ACGGAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2177180 119 +   4244037 TCATTTTGCACTCTTTATGTCAGCTAAGCAGAAGGCAGAGGACACAG-------TTGGTGAGGGGTAATTATTCTGAAAGCATAGAATGT--AGGAgaatgtatccgtagctcgggagattt-actgaa
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200174 119 +   4569836 tcattttgcactctttatgtcagctgagcagaaggcagaggacacag-------ttggtgaggggtaattattctgaaggcatagaatgt--aggagaatgtatctgtagctcaggagattt-actgaa
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1864511 126 +   3513951 TCATTTTACATTCTTCATGTCAGCAGAGCAGAAGGCAAAGAACAGAGTTCCTATTTGGTGAGAAGCTATTATCCTGAAGTCAGATAATAT--AGGTGAATCTATCTGTAGCTCAAGAGATTT-ACTGAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1910126 126 +   1920343 tcattttacactcttcatgtcaacagagcagaaggtaaaaaacagagttcctgtttggttaggagtaattatcctgaagtcggagagtgt--aggggaatctatctgtagctcaggagattt-actgaa
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7024162 126 -   7032639 TCATTTTACACTCTTCATGTCAGCAGATTAGAAGGCAAAGAACAGAGTTCCTATTTGATGAGGAGCTATTATCCTGAAGTCGGAGAATGT--AAGAGAATCTATCTGTAGCTCAGGAGATTT-ACTGAA
i aotNan1.NW_018502359v1    C 0 C 0
s canFam3.chr9              39587360 129 -  61074082 TCATTTTGTACTCCTCATGTTAGTAGACGAGCATGTAGAGAAAAGGGTCACTGTTCGGTGATGGATAATTATCATAAAAAGGTAGACTGCAGAGAGAAAGGTATCTGGAACTCAGGAGATTTCACTGGA
i canFam3.chr9              C 0 I 2283
e mm10.chr11                22135123 10168 - 122082543 I
e dasNov3.JH570468            493089 3941 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576   0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=585300.000000
s hg38.chr17_JH159148v1_alt    32751 95 +     88070 CAtactaatttactagcactgctgtgataaaccactacaaaccaagtggcttaaatttatattcttgcagttctgaaggctagcagtctggattt
s panTro5.chr17             16343853 95 +  83181570 CAtactaatttactagcactgccgtgataaaccactacaaaccaagtggcttaaatttattttctcatagttctgaaggctagcagcctgaattt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16248474 95 +  83442489 catactaatttactagcactgccgtgataaaccactacaaaccaagtggcttaaatttattttctcatagttctgaaggctagcagcctgaattt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4095415 95 +   4267968 catactaatttactagcactgccgtgataaaccactacaaaccaagtggcttaaatttattttctcatagttctgaaggctagcaccctgaattt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080518 95 -   2193130 catattaatttactagcactgccgtgataaaccactacaaaccaagtggcttaaatttatattctcgcagttctgaaggctagcagtctgaattt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2107985 95 +  10377808 tatgttaatttactagcactgccatgataaactactacaaaccaagtggcttaaatttattttcccacagttctgaagagtagcagcctgaattt
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992951 95 -   8458610 tatgttaatttactagcactgccatgataaactactacaaaccaagtggcttaaatttattttcccacagttctgaagagtagcagcctgaattt
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64949296 95 +  75148670 tatattaacttgctatcagtgccatgataaattactgcaaaccaagtggcttaaatttattttttcacagttccgaaggcttctagtctgaaatt
i chlSab2.chr16             C 0 T 11656
s manLeu1.NW_012106252v1     2177299 95 +   4244037 tatgttaatttactagcactgccatgataaactactacaaaccaagtggcttaaatttattttcccacagttctgaagagtagcagcctgaattt
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200293 95 +   4569836 tatgttaatttactagcactgccatgataatctactacaaaccaagtggcttaaatttattttcccacagttctgaagagtagcagcctgaattt
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1864637 95 +   3513951 tatattaatttactagcactgccatgataaactattacaaaccaaatggcttaaactgattttctcatagttctgaaggctagcagtctgaattc
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1910252 95 +   1920343 tatattaatttactagcactgccatgataaactgctacaaaccaagtggcttaaatttattttctcctagttctgaaggccagcagtctgaattt
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7024288 95 -   7032639 tatattaatttactagcactgccatgataaattactacaaaccaagtggcttaaatttattttctcataattctgaaggccagcagtctggattt
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e dasNov3.JH570468            493089 3941 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=526808.000000
s hg38.chr17_JH159148v1_alt    32846 90 +     88070 aaggtgttgccaaggttgttttcacctgaggactgttaggaaagcatctgttccaggtctctctccttgaagtgtggatgtctgtcttct
s panTro5.chr17             16343948 90 +  83181570 aaggtgttgacaaggttgttttcacctgaggactcttaggaaagcatctgttccaggtctctctccttgatgtgtagatgtctgtcttct
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16248569 90 +  83442489 aaggtgttgacaaggttgttttcacctgaggactcttaggaaagcatctgttccaggtctctctccttgatgtgtagatgtctgtcttct
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4095510 90 +   4267968 aaggtgttgacaaggttgttttcacctgaggactgttaggaaagcatctgttccaggtctctctccttgatgtgtagatgtctgtcttct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080613 90 -   2193130 aaggtgttgacaaggttgttttcacctgaggactgttaggaacgcatctgttccaggtctgtctccttgacgtgtggatgtctgtcttct
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2108080 90 +  10377808 aaggtgttgacaaggttgtttttacctgaggattgttagggaagtatctgttccaggtgtctgtccttgacttgtagatgtctgtcttct
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1993046 90 -   8458610 aaggtgttgacaaggttgtttttacctgaggattgttagggaagtatctgttccaggtgtctgtccttgacttgtagatgtctgtcttct
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937735 90 +  75148670 aaggtgttggcaatgttgttttcatctgagggctgtgagggaagtatctgttccaggtctctctccttgacctgtagatgtctatcttct
i chlSab2.chr16             T 11656 C 0
s manLeu1.NW_012106252v1     2177394 90 +   4244037 aaggtgttgacaaggttgtttttacctgaggattgttagggaagtatctgttccaggtgtctgtccttgacttgtagatgtctgtcttct
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200388 90 +   4569836 aaggtgttgacaaggttgtttttacctgaggattgttaggaaagtatctgttccaggtgtctctccttgacttgtagatatctgtcttct
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1864732 90 +   3513951 caggtgtggacaaggctgtttttgcctgaagactgtaaggaaagtatctgttcctggtctccctccttgacttgtagatgtgtgtctttt
i saiBol1.JH378271          C 0 I 6257
s cebCap1.NW_016107730v1     1910347 89 +   1920343 caggtgtggac-aggttgtttcttcctgaagactgtaaggaaagtatctgttcctggtctccctccttgacttgtagatgtgtgtcttct
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7024383 90 -   7032639 caggtgtggacaaggttgtttttgccagaagactataaggaatatatctgttcctggtctccctccttgacttgtagatgtgtgtcttct
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e dasNov3.JH570468            493089 3941 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=1481298.000000
s hg38.chr17_JH159148v1_alt    32936 267 +     88070 ccatgtgtctctaacatgaccatccttctagatgcacactgcctctgaacttacccattctatacaggcatcagtaatattgaatcagaagc----ctgattccaatatgactggatcttaagtaattacagtttcaatatccctatttgaatatgaattttgggggacacaagtcaagccataataTTGGAGAATCTCATAGTGTGTCCATGCCCAGTGATAACCACAAATGAGTGAAAACAGCAATCGCAG-TGGACAATGGTACAGTAA
s panTro5.chr17             16344038 267 +  83181570 ctatgtgtctcttacgtgaccttccttctagatgcacactacctctgaaattccccattctatacaggcatcagtaatactgaatcagaagc----ctgattccaatatgaccggatcttaagtaattacagtttcaatatccctatttgaatatgaattttgggggacacaagtcaagccataataTTGGAGAATCTCATAGTGTGTCCATGCCCAGTGATAACCACAAATGAGTGAAAACAGCAATCACAG-TGGACAATGGTACAGTAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16248659 267 +  83442489 ctatgtgtctcttacgtgaccttccttctagatgcacactacctctgaaattccccattctatacaggcatcagtaatactgaatcagaagc----ctgattccaatatgaccggatcttaagtaattacagtttcaatatccctatttgaatatgaattttgggggacacaagtcaagccataatattggagaatctcatagtgtgtccatgcccagtgataaccacaaatgagtgaaaacagcaatcacag-tggacaatggtacagtaa
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4095600 269 +   4267968 --atgtgtctcttacgtgaccttccttctagatgcacaccacctctgaaattccccattctatacaggcatcagtaatattgaatcagaggcctaactgatttccatatgaccagatcttaactaagtacattttcaatgaccctatttgaatatgaattctgagggacacaagtcaacccataacactggagaatctcatagtgtgtccatgcccagtgataaccacaaatgagtgaaaacagcaatcacag-tggacagtggtacagtaa
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080703 267 -   2193130 ccatgtgtctctaacatgaccttccttctagatgcacattgcctctgaacgttcccattctatacagtcatcagtaatattgaatcggacgc----ccgattccaatatgaccagatcttaagtaattacattttcaatatccctatttgaatatgaattttgggggacacaagtcaacccataacattggagaatctcatagtgtgtccatgcccagtgataaccacaaatgagtgaaaacagcaatcccag-tggacaatggtacagtaa
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2108170 269 +  10377808 ccacctgtctcttacatgatcttccttctagatgcacatggcctctgaacttccccattctatacaggcaccagtcctattgaatcagaggcctaacttattccaatatgacctgatcttaactaattacatttc-agtgaccttatttgaatatgaattttgggggagac-attcaacccatagtactggagaatctcgtggtgtgtccatgctcagtgataaccacacaggagtgaaaacagcaatcacag-tggacaatggtacagtaa
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1993136 269 -   8458610 ccacctgtctcttacatgatcttccttgtagatgcacatggcctctgaacttccccattctatacaggcaccagtcctattgaatcagaggcctaacttattccaatatgacctgatcttaactaattacatttc-agtgaccttatttgaatatgaattttgggggagac-attcaacccataacactggagaatctcgtggtgtgtccatgctcagtgataaccacacaggagtgaaaacagcaatcacag-tggataatggtacagtaa
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937825 270 +  75148670 ccatgtgtgtcttacatcatcttccctctatatgcgtctggtctc--aatttcccctttttatacagacatcagtcgtattgagtcagaggcacaatttattccaatatgaccttatgttaccatattgcattttaaatgaccctatttGAATATGAGTTATTGAGGACACAATTCAACCCATAACCTCGGAATATCTCAGAGTGTATCCATGCCCAGTGATAAACACAAATGAGTAACAAAAGCAACCACGGTTGGACAATGGTATAGTAA
i chlSab2.chr16             C 0 T 4453
s manLeu1.NW_012106252v1     2177484 269 +   4244037 ccacctgtctcttacatgatcttccttctagatgcacatggcctctgaacttccccattctatacaggcaccagtcctattgaatcagaggcctaacttattccaatatgacctgatcttaactaattacatttc-agtgaccttatttgaatatgaattttgggggagac-attcaacccataacactggagaatctcgtggtgtgtccatgctcagtgataaccacacaggagtgaaaacagcaatcacag-tggataatggtacagtaa
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200478 270 +   4569836 ccacgtgtctcttacatgatcttccttctagatgcacacggcctctgaacttccccattctatacaggcatcagtcctattaaatcagaggcctaacttattccaatatgacctgatcttagctaattacattttcagtgaccttatttgaatatgaattttgggggagac-attcaacccataacactggagaatctcgtggtgtgtccatgctcagtgataaccacacatgagtgaaaatggcaatcacag-cggacaatggtacagtaa
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1871079 270 +   3513951 ccctgtgtctcttacgttagcttccttctagaagcacactgcctctgaacttccccattctatacaggcatcagtcacattgaatcagaggcctaactgattccagtatgacctgatcttaactaattacattttcagtgactctatttGAGTATGAATTTGTGGAGACAC-AGTCAACCCATAACACTGAAGAATCTCATAGTGTGTCCACGCCCGGTGATAACCACCAGTGACTGAAGACAGCAATCACAG-TGGACAATGGCACAGTAA
i saiBol1.JH378271          I 6257 C 0
s cebCap1.NW_016107730v1     1910436 266 +   1920343 ccatgtgtctgttatgttagcttccttctag-agcacactgcctctgaacttccccattctatacaagcatcagtcatattgaatcagaggc----ctgtttccaatatgacctgatcttaactagttacattttcaatgactctatttgagtatgaatttgtggagacacaagtcaacccataacactgaataatctcatagtgtgtccatgcccagtgataaccaccaatgagtgaaaacagcaatcacag-tggacaatggtacagtaa
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7024473 271 -   7032639 ccatgtgtctcttaccttagcttccttctagaaacacactgcctctggacttccccattctatacaggcatcagtcatattgaatcagaggcctaactgattccaatatgatgtgatcttaactaattacattttcaatgactctatttgagtatgaatttgtggagacacaagtcaacccataacCCTGAAGAATCTCATAGTGTGTCCATGCCCGGTGATAACCACCAATGAGTGAAAACAGCAATCACGG-TGGACGATGGTACAGTTA
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e dasNov3.JH570468            493089 3941 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576   0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=71531.000000
s hg38.chr17_JH159148v1_alt    33203 14 +     88070 CTAGCAGCTCAGAC
s panTro5.chr17             16344305 14 +  83181570 CTAGCAGCTCAGAC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16248926 14 +  83442489 ctagcagctcagac
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4095869 14 +   4267968 ctaggggctcagac
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080970 14 -   2193130 ctagcagctcagac
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2108439 14 +  10377808 ctagtggctcagac
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1993405 14 -   8458610 ctagcggctcagac
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2177753 14 +   4244037 ctagtggctcagac
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200748 14 +   4569836 ctagcggctcagac
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1871349 14 +   3513951 CTAGCAGCTCAGCC
i saiBol1.JH378271          C 0 T 5766
s cebCap1.NW_016107730v1     1910702 14 +   1920343 ctagcagctcagac
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7024744 14 -   7032639 CCTGCAGCTCAGAA
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e dasNov3.JH570468            493089 3941 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e chlSab2.chr16             64938095 4453 +  75148670 T
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=7800.000000
s hg38.chr17_JH159148v1_alt    33217 1 +     88070 C
s panTro5.chr17             16344319 1 +  83181570 C
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16248940 1 +  83442489 c
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4095883 1 +   4267968 c
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080984 1 -   2193130 c
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2108453 1 +  10377808 c
i macNem1.NW_012014910v1    C 0 T 4743
s cerAty1.NW_012006043v1     1993419 1 -   8458610 c
i cerAty1.NW_012006043v1    C 0 T 4404
s manLeu1.NW_012106252v1     2177767 1 +   4244037 c
i manLeu1.NW_012106252v1    C 0 T 4425
s colAng1.NW_012122154v1     2200762 1 +   4569836 c
i colAng1.NW_012122154v1    C 0 T 4373
s saiBol1.JH378271           1865597 1 +   3513951 c
i saiBol1.JH378271          T 5766 C 0
s cebCap1.NW_016107730v1     1910716 1 +   1920343 c
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7024758 1 -   7032639 C
i aotNan1.NW_018502359v1    C 0 C 0
s dasNov3.JH570468            497030 1 -    852752 C
i dasNov3.JH570468          I 3941 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e chlSab2.chr16             64938095 4453 +  75148670 T
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=1826.000000
s hg38.chr17_JH159148v1_alt    33218 1 +     88070 T
s panTro5.chr17             16344320 1 +  83181570 T
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16248941 1 +  83442489 t
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4095884 1 +   4267968 c
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080985 1 -   2193130 c
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2103711 1 +  10377808 c
i macNem1.NW_012014910v1    T 4743 C 0
s cerAty1.NW_012006043v1     1989016 1 -   8458610 c
i cerAty1.NW_012006043v1    T 4404 C 0
s colAng1.NW_012122154v1     2196390 1 +   4569836 c
i colAng1.NW_012122154v1    T 4373 C 0
s saiBol1.JH378271           1865598 1 +   3513951 t
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1910717 1 +   1920343 t
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7024759 1 -   7032639 T
i aotNan1.NW_018502359v1    C 0 C 0
s dasNov3.JH570468            497031 1 -    852752 T
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e manLeu1.NW_012106252v1     2177768 4425 +   4244037 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e chlSab2.chr16             64938095 4453 +  75148670 T
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=11521.000000
s hg38.chr17_JH159148v1_alt    33219 2 +     88070 TT
s panTro5.chr17             16344321 2 +  83181570 TT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16248942 2 +  83442489 tt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4095885 2 +   4267968 TC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080986 2 -   2193130 tt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2103712 2 +  10377808 tt
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1989017 2 -   8458610 tt
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2173343 2 +   4244037 TT
i manLeu1.NW_012106252v1    T 4425 C 0
s colAng1.NW_012122154v1     2196391 2 +   4569836 tt
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1865599 2 +   3513951 tc
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1910718 2 +   1920343 tt
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7024760 2 -   7032639 TT
i aotNan1.NW_018502359v1    C 0 T 4825
s dasNov3.JH570468            497032 2 -    852752 TT
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e chlSab2.chr16             64938095 4453 +  75148670 T
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=6600.000000
s hg38.chr17_JH159148v1_alt    33221 1 +     88070 C
s panTro5.chr17             16344323 1 +  83181570 C
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16248944 1 +  83442489 c
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4095887 1 +   4267968 C
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080988 1 -   2193130 c
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2103714 1 +  10377808 c
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1989019 1 -   8458610 c
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2173345 1 +   4244037 C
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2196393 1 +   4569836 c
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1865601 1 +   3513951 c
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1910720 1 +   1920343 c
i cebCap1.NW_016107730v1    C 0 T 4752
s dasNov3.JH570468            497034 1 -    852752 C
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e aotNan1.NW_018502359v1     7024762 4825 -   7032639 T
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e chlSab2.chr16             64938095 4453 +  75148670 T
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=180693.000000
s hg38.chr17_JH159148v1_alt    33222 36 +     88070 TGTCCATTTTCTTCCTCTCCTCCCCTCCCTCCTTTT
s panTro5.chr17             16344324 36 +  83181570 TGTCCATTTTCTTCCTCTCCTCCCCACCCTCCTTTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16248945 36 +  83442489 TGTCCATTTTCTTCCTCTCCTCCCCACCCTCCTTTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4095888 36 +   4267968 TGTTCCTTTTCTTCCTCTCCTCCTCTCCCTCCTTTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2080989 36 -   2193130 TGTCCATTTTCTTCCTCTCCTCCTCTCCCTCCTTTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2103715 36 +  10377808 TGTCTctcttctttctctcctcctctccctccttct
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1989020 36 -   8458610 TGTCTctcttctttctctcctcctctccctccttct
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64933642 36 +  75148670 TGTCTCTCTTCTTTCTCTCCTCCTCTCCTTCCTTCT
i chlSab2.chr16             T 4453 C 0
s manLeu1.NW_012106252v1     2173346 36 +   4244037 TGTCTCTCTTCTTTCTCTCCTCCTCTCCCTTCTTCT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2196394 36 +   4569836 tgtctctcttctttctctcctcctctccctccttct
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1865602 36 +   3513951 tctttctcctcttcctctcctccttgtcttccttct
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1905969 36 +   1920343 tctccttcttcttcctctcttcctctccctcattct
i cebCap1.NW_016107730v1    T 4752 C 0
s dasNov3.JH570468            497035 34 -    852752 TCTTCATCTTCCTCCACTGTT--TATTCCTTATTTT
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e aotNan1.NW_018502359v1     7024762 4825 -   7032639 T
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=459174.000000
s hg38.chr17_JH159148v1_alt    33258  79 +     88070 CCTAGAATTTCTGGCTATCCATCACAGTTAAGAAGCAAA----------------------------GAATAAATCTGAGTAGAGCAAATGGCAGATCATAGATAAC
s panTro5.chr17             16344360  79 +  83181570 CCTAGAATTTCTGGCTATCCATCACAGTTAAGAAGCAAA----------------------------GAATAAATCTGAGTAGAGCAAATGGCAGATCATAGATAAC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16248981  79 +  83442489 CCTAGAATTTCTGGCTATCCATCACAGTTAAGAAGCAAA----------------------------GAATAAATCTGAGTAGAGCAAATGGCAGATCATAGATAac
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4095924  78 +   4267968 CCTAGAATTTCTGGCTATCCATCACA-TTAAAAAGCAAA----------------------------GATTGGATGTAAGTGGAGCAAATGGCAGATCATAGATAAC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2081025  78 -   2193130 CCTACAATTTCTGGCTATCC-TCACAGTTAAGGAGCAAA----------------------------GAATAAATCTGAGTAGAGCAAACGGCAGATCATAGATAAC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2103751  79 +  10377808 cctAGAATTTCTGGCTGTCCATCATAGTTAAGAAGCAAA----------------------------GATTGGATCTCAGTGGAGCGAATGACAGATCATAGATAAC
i macNem1.NW_012014910v1    C 0 I 15102
s cerAty1.NW_012006043v1     1989056  79 -   8458610 cctAGAATTTCTGGCTGTCCATCACAGTTAAGAAGCAAA----------------------------GATTGGATCTCAGTGGAGCGAATGACAGATCATAGATAAC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64933678  79 +  75148670 CCTAGAATTTCTGGCTGTCCATCACAGTTAAGAAGCAAA----------------------------GATTGGATCTGAGTGGAGCGAATGACAGATCATAGATGAC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2173382  79 +   4244037 CCTAGAATTTCTGGCTGTCCATCACAGTTAAGAAGCAAA----------------------------GATTGGATCTGAGTGGAGCGAATGACAGATCATAGATAAC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2196430  79 +   4569836 cctAGAATTTCTGGCTGTCCATCACAGTTAAGAAGCAAA----------------------------GATTGGATCTGAGTGGAGCAAATGACAGATCATAGATAAC
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1865638  79 +   3513951 tctAGAGTTTGTGGTTGTTTACTACATTTAAGAAGCAAA----------------------------GATTGGGTCTGTGTGGAGCAAATGATAGATTGTCGCTAAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1906005  79 +   1920343 cCTAGAATTTCTGGCTGTCCATCACAGTTAAGAAGCAAA----------------------------GATTAAATCTGAGTGGAGCAAACGGCAGGTCATAGAGAAC
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7019937  79 -   7032639 CCTAGAATTTCTGGCTGTCCATCACAGTTAAGAAGCAAA----------------------------GATTAAAGCCGAGTGGAGCAAACGGCAGATCATAGAGAAC
i aotNan1.NW_018502359v1    T 4825 C 0
s dasNov3.JH570468            497069 103 -    852752 TTAAAAACTTG----TATACATGACTTTGAATAGGAAAAACGGGTTGGAGTAAGTTCAATGGTGTGTGACTCGATCTGTATGGAGGAATAGTTGTATTCTGCATTAT
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576   0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=29028.000000
s hg38.chr17_JH159148v1_alt    33337 5 +     88070 GTTTT
s panTro5.chr17             16344439 5 +  83181570 GTTTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249060 5 +  83442489 gtttt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4096002 5 +   4267968 ATTTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2081103 5 -   2193130 GTTTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2118932 5 +  10377808 GTTTT
i macNem1.NW_012014910v1    I 15102 C 0
s cerAty1.NW_012006043v1     1989135 5 -   8458610 ATTTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64933757 5 +  75148670 ATTTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2173461 5 +   4244037 ATTTT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2196509 5 +   4569836 ATTTT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1865717 4 +   3513951 ATTT-
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1906084 5 +   1920343 GTTTT
i cebCap1.NW_016107730v1    C 0 I 5572
s aotNan1.NW_018502359v1     7020016 5 -   7032639 GTTTT
i aotNan1.NW_018502359v1    C 0 I 1
s dasNov3.JH570468            497172 5 -    852752 GTTTT
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=233848.000000
s hg38.chr17_JH159148v1_alt    33342 55 +     88070 CATTATCCCATCCATATATTTTGGattttagtgtgctcaggccagtttctatctt
s panTro5.chr17             16344444 55 +  83181570 CATTATCCCGTCCATATATTTTGGattttagtgtgctcaggccagtttctatctt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249065 55 +  83442489 cattatcccgtccatatattttggattttagtgtgctcaggccagtttctatctt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4096007 55 +   4267968 CATTATCCTGTTCCTATTTCTCAGGTCTTACTGTCCTCGGGCCAGTTTATATCTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2081108 54 -   2193130 CATTATCCCATCCATATATTTTGGATCTTAGTGTGCTCAGGCCAG-TTCTATTTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2118937 55 +  10377808 CATGATTGCATCCCTATATCTTGGATATTAGTGTGCTTGGATTAATTTCCATCTG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1989140 55 -   8458610 CATTATCCTGTCCATATTTCTCGGATCTTAGTGTGCTTGAGTCAGTTTCCATTTG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64933762 55 +  75148670 CATtatcctgtccatatttctcggatcttagtgtgcttgagtcagtttccatttg
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2173466 55 +   4244037 CATTATCCTGTCCATATTTCTCAGATCTTAGTGTGCTTGAGTCAGTTTCCATTTG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2196514 55 +   4569836 CATTATCCTGTCCATATTTCTTGGATCTTAGTGTGCTTGAGTCAGTTTCCATTTG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1865721 55 +   3513951 CATCATGCCGCCCCTGTGTCTTGGATCTCAGTATTCTCAGACCAATATGCGTTTG
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7020022 55 -   7032639 CATTATCCTGCCAATGTATCTTGGattttactgtgcttgggccattttctatctg
i aotNan1.NW_018502359v1    I 1 C 0
s dasNov3.JH570468            497177 54 -    852752 GATTA-CCCACCCATGTATCTTCTATCTTGGTATATTCAGGTGGTCTTCCATCTA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e cebCap1.NW_016107730v1     1906089 5572 +   1920343 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=326964.000000
s hg38.chr17_JH159148v1_alt    33397 50 +     88070 ccagaatctgcatctctgtgcctaaaggctctTGTATTGTACCTGCAGAA
s panTro5.chr17             16344499 50 +  83181570 ccagaatctgcatctctgtgcctaaaggctCTTGTATTGTACCTGCAGAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249120 50 +  83442489 ccagaatctgcatctctgtgcctaaaggctctTGTATTGTACCTGCAGAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4096062 50 +   4267968 CCAGAGTCTGCATCTCCGTGCCTACGGGCTTTTGTATTGCCACTGTAGAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2081162 50 -   2193130 CCAGAATCTGCATCTCTGTGCCTAAAGGCTCTTGTATTGCACCTGCAGAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2118992 50 +  10377808 TCAAAATCTGCATCTCTGTGCCTAAGGGCTCTTGTATTGCAGCTGTAGAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1989195 50 -   8458610 CCAGAATCTGTATCTCTGTGCCTAAGGGCTCTTGTATTGCAATTACAGAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64933817 50 +  75148670 ccagaatctgtatctctgtgcctaagggctcttgtattgcaattgcagaa
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2173521 50 +   4244037 CCAGAATCTGTATCTCTGTGCCTAAGGGCTCTTGTATTGCAATTACAGAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2196569 50 +   4569836 CCAGAATCTGTATCTCTGTGCCTAAGGGCTCTTGTATTGCAACTGCAGAA
i colAng1.NW_012122154v1    C 0 I 823
s saiBol1.JH378271           1865776 50 +   3513951 CCAGAATCGCCATCTCTGTGCCTAAGGGCTCTTGTATTGCAACTGAAGAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1911661 50 +   1920343 ccagaatctgcatctctgtgcctaagggctCGTGTATTGCAACTGGAGAA
i cebCap1.NW_016107730v1    I 5572 C 0
s aotNan1.NW_018502359v1     7020077 50 -   7032639 gcagaatctgcatctctgtgcataagggctcttatattgcagctggagaa
i aotNan1.NW_018502359v1    C 0 C 0
s dasNov3.JH570468            497231 50 -    852752 CCAATATGTGTACCTCTCTTCCTAACAGCTCTTTTTAAGCAAGTGTAGGA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=142398.000000
s hg38.chr17_JH159148v1_alt    33447 35 +     88070 AGTCATGTCACTTCTGCATGCCACAGAGCGAAAA-A
s panTro5.chr17             16344549 35 +  83181570 AGTCATGTCACTTCTGCATGCCACAGAGCGAAAA-A
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249170 35 +  83442489 AGTCATGTCACTTCTGCATGCCACAGAGCGAAAA-A
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4096112 35 +   4267968 AGTAATGTCACCTGTGCATGCTACACAGAGAAAA-A
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2081212 35 -   2193130 AGTCATGTCACTTCTGCATGCCACACAGCGAAAA-A
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2119042 35 +  10377808 AGTCATGCCACCTGTGAATGCAACACAGAGAAAA-A
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1989245 35 -   8458610 AGCCATGTCACCTGTGCATTCCACACAGAGGCAT-A
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64933867 35 +  75148670 agccatgtcacccgtgcattccacatagaggaat-a
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2173571 35 +   4244037 AGCCATGTCACCTGTGCATTCCACACAGAGGAAT-A
i manLeu1.NW_012106252v1    C 0 C 0
s saiBol1.JH378271           1865826 34 +   3513951 CGTCAAGTCACCTGTGCATGTCACACAGAGAAAG--
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1911711 34 +   1920343 AGTCAAGTTACCTGTGCATGTCACACAGAGAAAG--
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7020127 35 -   7032639 agtcatgtcacctgtgaatgccacacagaggaata-
i aotNan1.NW_018502359v1    C 0 I 393
s dasNov3.JH570468            497281 35 -    852752 AGTCGTGTGTCCTGTACATATCATGCTGAGAAAA-A
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e colAng1.NW_012122154v1     2196619 823 +   4569836 I
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=142362.000000
s hg38.chr17_JH159148v1_alt    33482 35 +     88070 C------ACTCGACCATTGATTCTGGGGAGCTGATTTACAA
s panTro5.chr17             16344584 35 +  83181570 C------ACTCGACCATTGATTCTGGAGAGCTGATTTACAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249205 35 +  83442489 C------ACTCGACCATTGATTCTAGAGAGCTGATTTACAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4096147 35 +   4267968 C------ACTCAAACAGTGATTCTGGAGAGCTGATTTACAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2081247 35 -   2193130 C------ACTCAGCCATTGATTCTGGAGAGCTGATTTACAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2119077 35 +  10377808 C------ACTCAACCAGTGATTCTGGAGAGCTGATTTATAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1989280 41 -   8458610 TCACTCAActcaaccaatgattctggagagctgatttacaa
i cerAty1.NW_012006043v1    C 0 I 439
s chlSab2.chr16             64933902 41 +  75148670 tcactcaactcaaccaatgattctggagagctgatttacaa
i chlSab2.chr16             C 0 I 439
s manLeu1.NW_012106252v1     2173606 41 +   4244037 TCACTCAActcaaccaatgattctggagagctgatttacaa
i manLeu1.NW_012106252v1    C 0 I 27228
s saiBol1.JH378271           1865860 35 +   3513951 C------ATTCAACCAGTGATACTGGAGAGTTGATTTATGA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1911745 35 +   1920343 C------ATTCAATCAGTGATTCTGGAGAGTTGATTTATGA
i cebCap1.NW_016107730v1    C 0 C 0
s dasNov3.JH570468            497316 34 -    852752 C------ATTAAACCCATACATTTGgagagttgactttaa-
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e aotNan1.NW_018502359v1     7020162 393 -   7032639 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e colAng1.NW_012122154v1     2196619 823 +   4569836 I
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=75799.000000
s hg38.chr17_JH159148v1_alt    33517 44 +     88070 AGACTCTAGCTCCTTTATTCCTGAAGTTGGAGAATTCTAATTTA
s panTro5.chr17             16344619 44 +  83181570 AGACCCTAGCTTCTTTATTCCTGAAGTTGGGGAATTCTAATTTA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249240 44 +  83442489 AGACCCTAGCTTCTTTATTCCTGAAGTTGGGGAATTCTAATTTA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4096182 43 +   4267968 AGACCCTAGCTCCTTTATTTC-AAAGTTGGAGAATTCTAATTTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2081282 44 -   2193130 AAACCCTAGCTCCTTTATTCCTGAAGTTGGAGAATGCTAATTTA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2119112 40 +  10377808 AGACTGTAGCTTC---ATTCCTGAGGTAGGATAATTCTAGCTG-
i macNem1.NW_012014910v1    C 0 C 0
s saiBol1.JH378271           1865895 42 +   3513951 AGACTCTAGCTTTGTTCTTCCTGAAGTAAGATAATTCTAATT--
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1911780 44 +   1920343 AGACTCTAACTTTGTCCTTCCTGAAGTAGGATCATTTGAATTTG
i cebCap1.NW_016107730v1    C 0 C 0
s dasNov3.JH570468            497350 44 -    852752 agaccccagttccctcattcctcaagaagaataattctgaactc
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e aotNan1.NW_018502359v1     7020162 393 -   7032639 I
e canFam3.chr9              39587489 2283 -  61074082 I
e manLeu1.NW_012106252v1     2173647 27228 +   4244037 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e colAng1.NW_012122154v1     2196619 823 +   4569836 I
e chlSab2.chr16             64933943 439 +  75148670 I
e cerAty1.NW_012006043v1     1989321 439 -   8458610 I
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=682084.000000
s hg38.chr17_JH159148v1_alt    33561 264 +     88070 TGTGTTTTTCATCATTTCTAATAG-TTTTCCCTTTGGTTTAAGCTTTAGTTAGTCACTGTGATACTTACCAGCTCAATAGTGTAccctcttctgtgtcactttcctgatccc-taccggtgtgatctgcacttcc-caataaactactttcactggagtatttttcttggtatctgttctgggagaaaccacactatgataTTACAttaactctctcagcctcaatttcctcctctctacaatggtaacattaatacttactttgaa
s panTro5.chr17             16344663 264 +  83181570 TGTGTTTTTCATCATTTCTAATAG-TTTTCCCTTTGGTTTAAGCTTTAGTTAGTCACTGTGATACTTACCAGCTCAATAGTGTAcccttttctgtatcactttcctgatccc-taccggtgtgatctgcacttcc-caataaactactttcactggagtatttttcttggtatctgttctgggagaaaccacactatgataTTACAttaactctctcagcctcaatttcctcctctctacaatggtaacattaatacctactttgaa
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249284 264 +  83442489 TGTGTTTTTCATCATTTCTAATAG-TTTTCCCTTTGGTTTAAGCTTTAGTTAGTCACTGTGATACTTACCAGCTCAATAGTGTAcccttttctgtatcactttcctgatccc-taccggtgtgatctgcacttcc-caataaactactttcactggagtatttttcttggtatctgttctgggagaaaccacactatgataTTACAttaactctctcagcctcaatttcctcctctctacaatggtaacattaatacctactttgaa
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4096225 264 +   4267968 TGTGTTTTTCATCATTTCTGATAG-TTTTCCCTTTGGTTTAAACTTTAGTTGGTCACTGTGATACTTACTGGCTCAATAGTATAcccttttctgtatctcttccctgatccc-taatggtgtgatctgcacttcc-caataaactactttcactggaatatttttctaagtatctgttctgggagaaactacactatgacaTTACAttaactctctcagccttgctttcctcatctctacaatggtaacattaatacctactttgaa
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2081326 264 -   2193130 TGTGATTTTCATAATTTCTGATAG-TTTTTCCTTTGGTTTAAGCTTTAGTTAGTCACTGTGATACTTACCAGCTCAATAGTGTAcccttttctgtatcactttcctgatccc-taccggcgtgatctgcacttcc-ccataaactgctttcactggaatatttttctcggtatctgttctgggagaaaccacactatgacaTTACAttaactctgtcagcctcaatttcctcctctctacaatggtaacgttaatatctactttgaa
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2119152 248 +  10377808 TGTGTTTTTCATCATTTCTGATAA-TTTTCGCTTTAGTTTAAGCTTTAGTTGGTGACTGTGATACTGA----CTTAATAATGAACCCTTTTCTGTATCGCTTCCCCAATCCC-TAC------------cacttcc-cagtaaactactttcactggaatctttttttcagagtctcttctatgagaaactaatctatgacaATACGTTCActctctcagcctcaaatttctcatctctacaaagggaacattaatacctattttgaa
i macNem1.NW_012014910v1    C 0 T 14636
s manLeu1.NW_012106252v1     2200875 260 +   4244037 TGTGTTTTTCATCTTTTCTGATAG-ATTTCCCTTTAGTTTAAAGTTTAATTGCTCACTGTGATACTGA----CTTAATAGTGAAccctcttctgtatcacttccccagttcc-taccagtgtaatctgcatttcc-caataaactagtttccctggaatcttttcttcagcgtctcttctgggagaaACTTATCTGTGACATTATGttaactccctcagcctcaattttcttatctctaccatgggaacatgaacacctattctgaa
i manLeu1.NW_012106252v1    I 27228 C 0
s saiBol1.JH378271           1865937 254 +   3513951 ----TTTTTCATCATTTCTGACAA-ATTTTTGTTTGGTTTAAGGTTTGTTTGGTTACTGCGACACTAG----TTGAATAGTGTAcccttttctgtatcacttctccagcatc-tactggtgtgatcggcagtttt-caataaactactttcactcgaata-ctttctcagagtttgttatggga-aaaccgaaCTCTGATATTACATTTcctctctgagcctcaattttctcatctctacaatgggaacattaatacctcctttgAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1911824 259 +   1920343 -TTCTTTTTCATCATTTCTTACAATTTTTTTGTTTGCTTTAAGCTTTCGTTGGTCACTGTGATACTAG----TTTAATAGTGTACCCTTTTCTGTACCACTTCTCCAGCATC-TACTGGTGTGATCCGCACTTTC-CCATAAACTGCTTTCGCTGGAATATTTTTCTCAGAGTTTGTTATGGGA-AAACCAAACTCTGATATTACATTTcctctctcagcctcaagtttctcatctctacaatgggaacatgagcacctactttgaa
i cebCap1.NW_016107730v1    C 0 C 0
s dasNov3.JH570468            497394 254 -    852752 tgcattttacatta--tctgatag-cttccattcaagtttaaacttcagctgcacactgtgatgcccg---gcttgatagtacaactttCCCTGTGCCATTTTCCCAATTCCTTAACAGTGCACTCTGCACTTCCTTAATAACATTCTTTCACTTCAAT------CTCAGCATGGTACATGGGGGAAACCATACTATggcattactttaagtcccttagctttgatttcctcatctctaaaagcaggctattaatacctacttgcc-
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e aotNan1.NW_018502359v1     7020162 393 -   7032639 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e colAng1.NW_012122154v1     2196619 823 +   4569836 I
e chlSab2.chr16             64933943 439 +  75148670 I
e cerAty1.NW_012006043v1     1989321 439 -   8458610 I
e macFas5.chr16             28049576   0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=66678.000000
s hg38.chr17_JH159148v1_alt    33825 46 +     88070 catttctttgagaataaatattaatgaaaataaagca---tttagtcac-
s panTro5.chr17             16344927 46 +  83181570 cgtttctttgagaataaatattaatgaaaataaagca---tttagtcac-
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249548 46 +  83442489 cgtttctttgagaataaatattaatgaaaataaagca---tttagtcac-
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4096489 45 +   4267968 catttcctcaagaataaatattaatgaacataaagca---tgtagtca--
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2081590 49 -   2193130 catttctttgagaataaatattaaagaaaataaagcattttttagtcat-
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s manLeu1.NW_012106252v1     2201135 46 +   4244037 agtttgttaaagaattaatgataatgtacacaaagtg---tttagcaaa-
i manLeu1.NW_012106252v1    C 0 C 0
s saiBol1.JH378271           1866191 46 +   3513951 TGTTTCTTCAATCGTTACTGAAAATATCCATAAAGGT---TTTAGTCAA-
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1912083 46 +   1920343 tgtttctttaagaattaatgataatgtccataaagca---tttgttcaa-
i cebCap1.NW_016107730v1    C 0 C 0
s dasNov3.JH570468            497648 47 -    852752 agcttcttcaagaatttgagataatctatatagagca---tctagtccaa
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e aotNan1.NW_018502359v1     7020162 393 -   7032639 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e colAng1.NW_012122154v1     2196619 823 +   4569836 I
e chlSab2.chr16             64933943 439 +  75148670 I
e cerAty1.NW_012006043v1     1989321 439 -   8458610 I
e macNem1.NW_012014910v1     2119400 14636 +  10377808 T
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=185533.000000
s hg38.chr17_JH159148v1_alt    33871  86 +     88070 tacctatcaaatagaagtcaacccagaacatattagttc-ttt-ttttGTCC-----------------------------AGAAAA-------------------CTTAAAAAATAATTTTAATTTTGAAGATAA--------
s panTro5.chr17             16344973  86 +  83181570 tacctatcaaatagaagtcaacccagaacatattagttc-ttt-ttttGTCC-----------------------------AGAAAA-------------------CTTAAAAAATAATTTTAATTTTGAAGATAA--------
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249594  86 +  83442489 tacctatcaaatagaagtcaacccagaacatattagttc-ttt-ttttGTCC-----------------------------AGAAAA-------------------CTTAAAAAATAATTTTAATTTTGAAGATAA--------
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4096534  84 +   4267968 ---ctatcaaatagtaggcaacctagaacatattagttctttt-tttTGTCC-----------------------------AGAAAA-------------------CTttaaaaataattttaatattgaagataa--------
i gorGor5.CYUI01015385v1    C 0 I 3
s nomLeu3.chrUn_GL397460_1   2081639  86 -   2193130 tacctatcaaatagaagtcaacccagaacatattagttc-ttt-ttttGTTC-----------------------------AGAAAT-------------------CTTAAAAAATAATTTTAATTTTGAAGATAA--------
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s manLeu1.NW_012106252v1     2201181  80 +   4244037 tgcccatcatatagcaggcaatcCAGAACATATTAGTG--TTT-GTTTGTTC-----------------------------AGAAAA-------------------TTCC-----CAAGTTTAATGTTGAAGATAA--------
i manLeu1.NW_012106252v1    C 0 T 27175
s saiBol1.JH378271           1866237  80 +   3513951 TACCCATGAAATAGTAGGCAACCCAGGACATATTAGTTG--TT-TTTTGTCC-----------------------------ATAGAA-------------------CTTC-----TAGTTTTAATGTTGAAGATAA--------
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1912129  81 +   1920343 tgcccatgaaatagtaggtaacctaggacatattagttg-ttt-ttTTGTCC-----------------------------ATAGAA-------------------CTTC-----TAGTTTTAATGTTGAAGATAA--------
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7020555  86 -   7032639 tatctatcaaatggtaggcaacctagaacatgttagctc-ttt-ttttGTTC-----------------------------AGAAAA-------------------CTTTAAAAATGATTTTAATATTGAAGATAA--------
i aotNan1.NW_018502359v1    I 393 C 0
s dasNov3.JH570468            497695 143 -    852752 tatgtagtgaacagAGGACAACCCAGAACATTTTAATTC-TTCATCTTATTCACCCCATCCTTCATCAAGAATCAGCAGGTAGAAAGCACAGATACTTGGCTGTCCCTTCAAAACACATATTATTTTCTGGTGTCCTTCCCTCA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e colAng1.NW_012122154v1     2196619 823 +   4569836 I
e chlSab2.chr16             64933943 439 +  75148670 I
e cerAty1.NW_012006043v1     1989321 439 -   8458610 I
e macNem1.NW_012014910v1     2119400 14636 +  10377808 T
e macFas5.chr16             28049576   0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=6504.000000
s hg38.chr17_JH159148v1_alt    33957 2 +     88070 TA
s panTro5.chr17             16345059 2 +  83181570 TA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249680 2 +  83442489 TA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4096621 2 +   4267968 ta
i gorGor5.CYUI01015385v1    I 3 C 0
s nomLeu3.chrUn_GL397460_1   2081725 2 -   2193130 TA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1989760 2 -   8458610 TA
i cerAty1.NW_012006043v1    I 439 C 0
s chlSab2.chr16             64934382 2 +  75148670 TA
i chlSab2.chr16             I 439 C 0
s manLeu1.NW_012106252v1     2174086 2 +   4244037 TA
i manLeu1.NW_012106252v1    T 27175 C 0
s saiBol1.JH378271           1866317 2 +   3513951 GA
i saiBol1.JH378271          C 0 I 3
s cebCap1.NW_016107730v1     1912210 2 +   1920343 GA
i cebCap1.NW_016107730v1    C 0 I 118
s aotNan1.NW_018502359v1     7020641 2 -   7032639 GA
i aotNan1.NW_018502359v1    C 0 I 3
s dasNov3.JH570468            497838 2 -    852752 TA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e colAng1.NW_012122154v1     2196619 823 +   4569836 I
e macNem1.NW_012014910v1     2119400 14636 +  10377808 T
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=130181.000000
s hg38.chr17_JH159148v1_alt    33959 36 +     88070 TATGTA-TAATAACTAACCAGATCAA---CTAAATTCTTT
s panTro5.chr17             16345061 36 +  83181570 TATGTA-TAATAACTAACCAGATCAA---CTAAATTCTTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249682 36 +  83442489 TATGTA-TAATAACTAACCAGATCAA---CTAAATTCTTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4096623 36 +   4267968 tattta-taataaCTAAGTAGATCAA---TTAAATTCTTA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2081727 36 -   2193130 TATGTA-TAATAACTAACTAGATCAA---TTAAATTCTTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1989762 36 -   8458610 TATTTA-TAATAACTAACTAGATCAA---CTAAATTCTTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934384 36 +  75148670 TATTTA-TAATAACTAACTAGATCAA---CTAAATTCTTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174088 36 +   4244037 TATTTA-TAATAACTAACTAGATCAA---CTAAATTCTTT
i manLeu1.NW_012106252v1    C 0 C 0
s saiBol1.JH378271           1866322 36 +   3513951 CATGAA-TCATAATTAACTAGATTAA---CTAACTTCCTt
i saiBol1.JH378271          I 3 C 0
s aotNan1.NW_018502359v1     7020646 36 -   7032639 TATTTA-TAATAACTAACTAGATCAA---CTAAATTCttt
i aotNan1.NW_018502359v1    I 3 I 51
s dasNov3.JH570468            497840 40 -    852752 TATGTACTGGTGACTCATCAGAGGTACTTCTAAAGTCTCT
i dasNov3.JH570468          C 0 I 142
e mm10.chr11                22135123 10168 - 122082543 I
e cebCap1.NW_016107730v1     1912212 118 +   1920343 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e colAng1.NW_012122154v1     2196619 823 +   4569836 I
e macNem1.NW_012014910v1     2119400 14636 +  10377808 T
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=116649.000000
s hg38.chr17_JH159148v1_alt    33995 42 +     88070 Ctttactagcttttttgaggtataattaacaaataaaaattg------
s panTro5.chr17             16345097 42 +  83181570 Ctttactagcttttttgaggtataattaacaaataaaaattg------
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249718 42 +  83442489 Ctttactagcttttttgaggtataattaacaaataaaaattg------
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4096659 42 +   4267968 CTTCActagctttattgaggtataattaacaaataaaaatta------
i gorGor5.CYUI01015385v1    C 0 I 311
s nomLeu3.chrUn_GL397460_1   2081763 42 -   2193130 Ctttactagcttttttcaggtataattaacaagtaaaaattg------
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1989798 42 -   8458610 Ctttactagctttattggggtataattaacaaataaaaattg------
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934420 42 +  75148670 Ctttactagctttattgaggtataattaacaaataaaaattg------
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174124 42 +   4244037 Ctttactagctttattgaggtataattaacaaataaaaattg------
i manLeu1.NW_012106252v1    C 0 C 0
s saiBol1.JH378271           1866358 47 +   3513951 -tttactagctttattgaggcactactgacaaataaaaataaaaattg
i saiBol1.JH378271          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e aotNan1.NW_018502359v1     7020682 51 -   7032639 I
e cebCap1.NW_016107730v1     1912212 118 +   1920343 I
e canFam3.chr9              39587489 2283 -  61074082 I
e dasNov3.JH570468            497880 142 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e colAng1.NW_012122154v1     2196619 823 +   4569836 I
e macNem1.NW_012014910v1     2119400 14636 +  10377808 T
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=62210.000000
s hg38.chr17_JH159148v1_alt    34037 24 +     88070 tgtatatgtaaggtataaaaggtt
s panTro5.chr17             16345139 24 +  83181570 tgtatgtgtaaggtataaaaggtt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249760 24 +  83442489 tgtatgtgtaaggtataaaaggtt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097012 24 +   4267968 tgtatatgtaaggtataaaaggtt
i gorGor5.CYUI01015385v1    I 311 C 0
s nomLeu3.chrUn_GL397460_1   2081805 24 -   2193130 tgtatgtgtaagttataaaaggtt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1989840 24 -   8458610 tgtatatttaaggtataaaaggtt
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934462 24 +  75148670 tgtatatttaaggtataaaaggat
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174166 24 +   4244037 tgtatatttaaggtataaaaggta
i manLeu1.NW_012106252v1    C 0 C 0
s saiBol1.JH378271           1866405 24 +   3513951 tgtatatttaatgtgtatgaggtg
i saiBol1.JH378271          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e aotNan1.NW_018502359v1     7020682 51 -   7032639 I
e cebCap1.NW_016107730v1     1912212 118 +   1920343 I
e canFam3.chr9              39587489 2283 -  61074082 I
e dasNov3.JH570468            497880 142 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46147053 386 - 159171411 T
e colAng1.NW_012122154v1     2196619 823 +   4569836 I
e macNem1.NW_012014910v1     2119400 14636 +  10377808 T
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=33070.000000
s hg38.chr17_JH159148v1_alt    34061  8 +     88070 atgtttt--g
s panTro5.chr17             16345163  8 +  83181570 atgtttt--g
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249784  8 +  83442489 atgtttt--g
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097036  8 +   4267968 atgtttt--g
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2081829  8 -   2193130 atgtttt--g
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1989864  8 -   8458610 atgtttt--g
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934486  8 +  75148670 atgtttt--g
i chlSab2.chr16             C 0 I 2
s manLeu1.NW_012106252v1     2174190  8 +   4244037 atgtttt--g
i manLeu1.NW_012106252v1    C 0 C 0
s calJac3.chr5              46146667  8 - 159171411 atgtttt--g
i calJac3.chr5              T 386 C 0
s saiBol1.JH378271           1866429 10 +   3513951 ttgtttcagg
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7020733  8 -   7032639 atgtttt--g
i aotNan1.NW_018502359v1    I 51 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e cebCap1.NW_016107730v1     1912212 118 +   1920343 I
e canFam3.chr9              39587489 2283 -  61074082 I
e dasNov3.JH570468            497880 142 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e colAng1.NW_012122154v1     2196619 823 +   4569836 I
e macNem1.NW_012014910v1     2119400 14636 +  10377808 T
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=18931.000000
s hg38.chr17_JH159148v1_alt    34069 4 +     88070 atat
s panTro5.chr17             16345171 4 +  83181570 atat
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249792 4 +  83442489 atat
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097044 2 +   4267968 --at
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2081837 4 -   2193130 atat
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1989872 4 -   8458610 atat
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934496 4 +  75148670 atat
i chlSab2.chr16             I 2 C 0
s manLeu1.NW_012106252v1     2174198 4 +   4244037 atat
i manLeu1.NW_012106252v1    C 0 C 0
s calJac3.chr5              46146675 4 - 159171411 atac
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1866439 4 +   3513951 atat
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1912330 4 +   1920343 atat
i cebCap1.NW_016107730v1    I 118 C 0
s aotNan1.NW_018502359v1     7020741 4 -   7032639 atac
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e dasNov3.JH570468            497880 142 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e colAng1.NW_012122154v1     2196619 823 +   4569836 I
e macNem1.NW_012014910v1     2119400 14636 +  10377808 T
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=911240.000000
s hg38.chr17_JH159148v1_alt    34073 197 +     88070 atatattcattgtgaaataatcacatatttattagctcacatagtt-accatttcctttttattt--------------ttgtggtgggaatatttaagatccactttctcag---------------caaatttcaggtgtacaaaaaagtatttt---aaactatatccaaattagt------gtacaccagatctg-caaaacttatttgtctta-------tataactgaTGTAGGTCAA
s panTro5.chr17             16345175 197 +  83181570 atatattcactgtgaaataatcacatatttattagctcacatagtt-accatttcctttttattt--------------ttgtggtgggaatatttaagatccactttctcag---------------caaatttcaggtgtacaataaagtatttt---aaactatatccaaattagt------gtacaccagatctg-caaaacttatttgtctta-------tataactgaTGTTGGTCAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249796 197 +  83442489 atatattcactgtgaaataatcacatatttattagctcacatagtt-accatttcctttttattt--------------ttgtggtgggaatatttaagatccactttctcag---------------caaatttcaggtgtacaataaagtatttt---aaactatatccaaattagt------gtacaccagatctg-caaaacttatttgtctta-------tataactgaTGTTGGTCAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097046 204 +   4267968 gtatattcattgtgaaataatcgcatatttattagctcacatagctaaccatttcctttttattt--------------ttgtggtgggaacatttaagatccatgttctcag---------------caaatttcaggtatacagtgaagtatttt---aaactatatccacattagttctgcagtacaccagatctg-cagaacttattcacctta-------tacaactgaTGTTGGTCAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2081841 197 -   2193130 atatattcattgtgaaataatcacatatttattagctcacatagtt-accatttcctttttattt--------------ttgtggtgggaacatttaagatccactttctcag---------------caaatttcaggtatacaataaagtatttt---aaactatatccacattagt------gtacaccagatctg-cagaacttatctgtctta-------tataactgaTGTTGGTCAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1989876 197 -   8458610 atatattcattgtgaaataatcatatatttattagctcacatagtt-accatttcctttttattt--------------ttgtggtgtgaacacttaagatccactttctcag---------------caaatttcaggtatacaataaagtatttt---aaactatatccacattaga------gtgcaccagatctg-cagaacttattcatctta-------tataactgaTGTTGGTCAT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934500 197 +  75148670 atatattcattgtgaaataatcatatatttattagctcacatagtt-accatttcctttttattt--------------ttgtggtgtgaacacttaagatccactttctcag---------------caaatttcaggtatacaataaagtatttt---aaactatatccacgttaga------gtgcaccagatctg-cagaacttattcatctta-------tataactgaTGTTGGTCAT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174202 197 +   4244037 agatattcattgtgaaataatcatatatttattagctcacatagtt-accatttcctttttattt--------------ttgtggtgtgaacacttaagatccactttctcag---------------caaatttcaggtatacaataaagtatttt---aaactatatccacattaga------gtgcaccagatctg-cagaacttattcatctta-------tataactgaTGTTGGTTAT
i manLeu1.NW_012106252v1    C 0 C 0
s calJac3.chr5              46146679 189 - 159171411 atatattcattgtgaaataatcacatatttattaactcacatggtt-accatttcctttttattt--------------ttgtggtgtgaaca-tttaagacaactttctcag---------------caaatttcaggtctacagtaaagtatttt----------atccacattagt------gtacaccagatctg-cagaacttattcatcata-------tataactgaTGTTGGCCAA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1866443 200 +   3513951 atatatttattgtaaaatcataatatattccttagctcacgtagtt-acaatttccttttcactt--------------ttatggtgtgaacagctcaggtctaccttcttag---------------aaaatttcaggtatacaataaaacattgttgttcactaaagtcacgttgtt------gtacactagatctg-cagaagttactcatcttg-------cgatactgaTGTTGGTCAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1912334 200 +   1920343 atatatttattgtgaaatcatagtatattccttacatcacgtagtt-acaatttccttttcattt--------------ttatggcgtgaacacctcagatctaacttcttag---------------caaatttcttgtatacaataaaacatttttgttaactacagccatgttgtt------gtacactagatctg-cagaagttactcatcttg-------caaaactgaTGTTGGTCAA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7020745 190 -   7032639 atatattcactgtgaaataatcacatatttatttactcacatggtt-accatttcctttttattt--------------ttgtggtgtgaatatttgagataaactttctcag---------------caaatttcaggtgtacagtaaagtgtttt----------atccacattagt------gtacaccagatctg-cagaagttattcatcgta-------tataactgaTGTTGGCCAA
i aotNan1.NW_018502359v1    C 0 C 0
s dasNov3.JH570468            498022 206 -    852752 ATATGTTTCCCATGCAAACATGAGCTTTTATTTTCCTCAGATACTT--------CCTTTTTACCTCCAGAAAACAGAGGTGGTGGTTTAGTTTCCTTAG----ACCTTCTAGGGAGTGTGAATCGATCAAAGTGACACATGCATGTTGTATTGTTTT------------------TAGT------GGCCA--AGGTTTGTCCTTAATTACTTTTCTTAGTGATGCTTTGATTAATATAAATTGA
i dasNov3.JH570468          I 142 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e colAng1.NW_012122154v1     2196619 823 +   4569836 I
e macNem1.NW_012014910v1     2119400 14636 +  10377808 T
e macFas5.chr16             28049576   0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=4095.000000
s hg38.chr17_JH159148v1_alt    34270 1 +     88070 A
s panTro5.chr17             16345372 1 +  83181570 A
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249993 1 +  83442489 A
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097250 1 +   4267968 A
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082038 1 -   2193130 A
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s calJac3.chr5              46146868 1 - 159171411 A
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1866643 1 +   3513951 A
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1912534 1 +   1920343 A
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7020935 1 -   7032639 A
i aotNan1.NW_018502359v1    C 0 C 0
s dasNov3.JH570468            498228 1 -    852752 A
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e manLeu1.NW_012106252v1     2174399 0 +   4244037 C
e otoGar3.GL873537          22862060 5348 +  28711273 I
e colAng1.NW_012122154v1     2196619 823 +   4569836 I
e chlSab2.chr16             64934697 0 +  75148670 C
e cerAty1.NW_012006043v1     1990073 0 -   8458610 C
e macNem1.NW_012014910v1     2119400 14636 +  10377808 T
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30137556 2247 -  77216781 T

a score=285307.000000
s hg38.chr17_JH159148v1_alt    34271 39 +     88070 -GAGAATGTGCTAG--------------------------------TTCTTCGTCTCCTTTACCCCATCACC
s panTro5.chr17             16345373 39 +  83181570 -GAGAATGTGCTAG--------------------------------TTTTTCATCTCTTTTACCCCATCACC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16249994 39 +  83442489 -GAGAATGTGCTAG--------------------------------TTTTTCATCTCTTTTACCCCATCACC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097251 39 +   4267968 -GAGAATGTGCTAC--------------------------------TTCTTCGTCTCCTTTACCCCATCACC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082039 39 -   2193130 -GAGAATGTGCTAG--------------------------------TTCTTCATCTCCTTTACCCCAACACC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135309 39 -  77216781 -GAAAATGTGCTTG--------------------------------GTCTTTGTCTCCTTTACCCCATCACC
i rheMac8.chr16             T 2247 C 0
s macNem1.NW_012014910v1     2104764 39 +  10377808 -GAAAATGTGCTTG--------------------------------GTCTTCGTCTCCTTTACCCCATCACC
i macNem1.NW_012014910v1    T 14636 C 0
s cerAty1.NW_012006043v1     1990073 38 -   8458610 -GAAAATGTGCTTG--------------------------------TTCTTTGTC-CCTTTACCCCATCACC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934697 39 +  75148670 -GAAAATGTGCTTG--------------------------------TTCTTTGTCTCCTTTACCCCATCACC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174399 38 +   4244037 -GAAAATGTGCTTG--------------------------------TTCTTTGTC-CCTTTACCCCATCACC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197442 39 +   4569836 -gaaaatgtgctag--------------------------------ttcttcatctcctttaccccatcacc
i colAng1.NW_012122154v1    I 823 C 0
s calJac3.chr5              46146869 39 - 159171411 -GAGAATGTGACAG--------------------------------TTCTTTGTCTCCTTTACCCCATCACC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1866644 38 +   3513951 --AGAATGTGACAG--------------------------------TTCTTCACCTTCTTTACCCCATCACA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1912535 38 +   1920343 --AGAATGTGATAG--------------------------------TTCTTCACCTTCTTTACCCCATCACA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7020936 39 -   7032639 -GAGAATGTGATAG--------------------------------TTCTTTGTCTCCTTTACCCCATCACC
i aotNan1.NW_018502359v1    C 0 C 0
s dasNov3.JH570468            498229 71 -    852752 TGAAAGT-TGATAGAGAACAGTATCTTGTCTGGGATCAGCAGGGATTTATTTATTTCCTTTTATCCATCAAC
i dasNov3.JH570468          C 0 N 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576  0 -  80997621 C

a score=243692.000000
s hg38.chr17_JH159148v1_alt    34310 30 +     88070 CAACGACTATCCCAGTCAGCGGCTTTTCTC
s panTro5.chr17             16345412 30 +  83181570 CAACGACTATCCCAGTCAGCGGCTTTTCTC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250033 30 +  83442489 CAACGACTATCCCAGTCAGTGGCTTTTCTC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097290 30 +   4267968 CAATGACTATCCCAGTCAGCGGCTTTTCTC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082078 30 -   2193130 AAATGACTATCCCAGGCAGCAGCTTTTCTC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135348 30 -  77216781 CAGTGACTATCCCAATCAGTGGCTTTTCTC
i rheMac8.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104803 30 +  10377808 CAGTGACTATCCCAATCAGTGGCTTTTCTC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990111 30 -   8458610 CAGTGACTATCCCAATCAGTGGCTTTTCTC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934736 30 +  75148670 CAGTGACTATCCCAATCAGTGGCTTTTCTC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174437 30 +   4244037 CAGTGACTATCCCAATCAGTGGCTTTTCTC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197481 30 +   4569836 cAGTGACTATCCCAATCAGTGGCTTTTCTC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46146908 30 - 159171411 CAATGACTATCACAGTCAGTGGCTTTTCTC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1866682 30 +   3513951 CAATGACTATCACGGTCATTGACCTTTGTC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1912573 30 +   1920343 CAATGACTATCACAGTCAGTGACTTTTGTC
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7020975 30 -   7032639 CAATGACTATCACAGTCAGTGGCTTTTCTC
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576  0 -  80997621 C

a score=22341.000000
s hg38.chr17_JH159148v1_alt    34340 3 +     88070 TCT
s panTro5.chr17             16345442 3 +  83181570 TCC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250063 3 +  83442489 TCC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097320 3 +   4267968 TCT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082108 3 -   2193130 TCT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135378 3 -  77216781 TCT
i rheMac8.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104833 3 +  10377808 TCT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990141 3 -   8458610 TCT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934766 3 +  75148670 TCT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174467 3 +   4244037 TCT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197511 3 +   4569836 TCT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46146938 3 - 159171411 TTT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1866712 3 +   3513951 TGT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1912603 3 +   1920343 TCT
i cebCap1.NW_016107730v1    C 0 T 5530
s aotNan1.NW_018502359v1     7021005 3 -   7032639 TTT
i aotNan1.NW_018502359v1    C 0 C 0
s dasNov3.JH570468            630619 3 -    852752 TCC
i dasNov3.JH570468          N 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576 0 -  80997621 C

a score=455934.000000
s hg38.chr17_JH159148v1_alt    34343 56 +     88070 CTCTGGAATCTTCACAGCATCCC----------AGATATACAGTCTCAAAA---------------GATGGCATCTGTATT
s panTro5.chr17             16345445 56 +  83181570 CTCTGGAATCTTCACAGCATCCC----------AGATATACAGTCTCAAAA---------------GATGGCATCTGTATT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250066 56 +  83442489 CTCTGGAATCTTCACAGCATCCC----------AGATATACAGTCTCAAAA---------------GATGGCATCTGTATT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097323 56 +   4267968 CTCTGGAATCTTCAAAGCATTCC----------AGATATACACTCTCAAAA---------------GATGGTGTCTGTATT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082111 56 -   2193130 CTCTGGAATCTTCACAGCATCCC----------AGATATACAGTCTCAAAA---------------GATGGTATCTGCAAT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135381 56 -  77216781 TTGAGGAATCTTCAGAGCATTCT----------AGATATGCAGTCTCAAAA---------------GATGGCATCTGTATT
i rheMac8.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104836 56 +  10377808 TTCTGGAATCTTCAGAGCATTCT----------AGATATGCAGTCTCAAAA---------------GATGGCATCTGTATT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990144 56 -   8458610 TTCTGGAATCTTCAGAGCATTCC----------AGATATACAGTCTCAAAA---------------GATGGCATCTGTATT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934769 56 +  75148670 TTCTGGAATCTTCAGAGCATTCC----------ACATATACAGTCTCAAAA---------------GATGGCATCTGTATT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174470 56 +   4244037 TTCTGGAATCTTCAGAGCATTCC----------AGATATACAGTCTCAAAA---------------GACGGCATCTGTATT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197514 56 +   4569836 TTCTGGAATCTTCAGAGCATTCT----------AGATATACAGTCTCAAAA---------------GATGGCATCTGTATT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46146941 56 - 159171411 TTCTGGAATTTTCAGAGCATACC----------AGAGATACACTCTCAAAA---------------GATGGCATCTGTATT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1866715 56 +   3513951 TAGCTGAGTCTTCAGAGCATTCT----------AGATACACCACCTCAGAA---------------GTTGGCATCTGTCTT
i saiBol1.JH378271          C 0 T 10777
s cebCap1.NW_016107730v1     1907076 56 +   1920343 TTCTGGAATTTTCAGAGCATTCC----------AGATATACACTCTCAAAA---------------GATGGCATCTGTATT
i cebCap1.NW_016107730v1    T 5530 C 0
s aotNan1.NW_018502359v1     7021008 56 -   7032639 TTCTGGAATTTTCAGAGCATTCC----------AGATACACACTCTCAAAA---------------GATGGCATCTGTATT
i aotNan1.NW_018502359v1    C 0 C 0
s dasNov3.JH570468            630622 75 -    852752 CTTTAGAT------GAGCATTCCTAACTTCACACAATGTGGAGTCTCAAAATATGTGATGCTGGTGAATGGCATCCATGTG
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576  0 -  80997621 C

a score=69707.000000
s hg38.chr17_JH159148v1_alt    34399 8 +     88070 TTATAAGG-
s panTro5.chr17             16345501 8 +  83181570 TTATAAGG-
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250122 8 +  83442489 TTATAAGG-
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097379 8 +   4267968 TTATAAGG-
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082167 8 -   2193130 TTATAAGG-
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135437 8 -  77216781 TTATAAGG-
i rheMac8.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104892 8 +  10377808 TTATAAGG-
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990200 8 -   8458610 TTATAAGG-
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934825 8 +  75148670 TTATAAAG-
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174526 8 +   4244037 TTATAAGG-
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197570 8 +   4569836 TTATAAGG-
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46146997 8 - 159171411 TTATAATG-
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1855994 8 +   3513951 TTATAAGG-
i saiBol1.JH378271          T 10777 C 0
s cebCap1.NW_016107730v1     1907132 8 +   1920343 TTATAAGG-
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7021064 8 -   7032639 TTATAAGG-
i aotNan1.NW_018502359v1    C 0 C 0
s dasNov3.JH570468            630697 8 -    852752 -TGGAAAGA
i dasNov3.JH570468          C 0 I 102
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576 0 -  80997621 C

a score=393122.000000
s hg38.chr17_JH159148v1_alt    34407 48 +     88070 AATAATTTAAGTTCATTTTGCCTTGTCAATATGTATTCAGGAGAAGAA
s panTro5.chr17             16345509 48 +  83181570 AATAACTTAAGTTCATTTTGCCTTGTCAATAGGTATTCAGGAGAAGAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250130 48 +  83442489 AATAACTTAAGTTCATTTTGCCTTGTCAATAGGTATTCAGGAGAAGAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097387 48 +   4267968 AATAACTTAAGTTCATTTTGTTTTGTCAATATGTATTCAGGAGAAGAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082175 48 -   2193130 AATAACTTAAGTTCGTTTTGCCTTGTCAATATGTATTCAGGAGAAGAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135445 48 -  77216781 AATAACTTAAGTTCCTTTTGTTTTGTCAATATGTTTTCAGGAGAAGAA
i rheMac8.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104900 48 +  10377808 AATAACTTAAGTTCCTTTTGTTTTGTCAATATGTTTTCAGGAGAAGAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990208 48 -   8458610 AATAACTTAAGTTCCTTTTGTTTTGTCAATATGTATTCAGGAGAAGAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934833 48 +  75148670 AATAACTTAAGTTCCTTTTGTTTTGTCAATATGTATTCAGGAGAAGAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174534 48 +   4244037 AATAACTTAAGTTCCTTTTGTTTTGTCAATATGTATTCAGGAGAAGAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197578 48 +   4569836 AATAACTTAAGTTCCTTTTGTTTTGTCAATATGTATTCAGGAGAAGAA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147005 48 - 159171411 AATAACTTAAGTTTATTCTGCTGTGTCGATATGTATTCAAGAGAAGAA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1856002 48 +   3513951 AACAACTGAAGTTTATTTTGCTGTGTCGAAATGTATTCAAGAGAAGAC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907140 48 +   1920343 AATAACTTGAGTTTATTTTGCTATGTCGATATGTATTCaagagaagaa
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7021072 48 -   7032639 AATAACTTAAGTTTATTTTGCTGTGTCGATATGTATTCaagagaagaa
i aotNan1.NW_018502359v1    C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e dasNov3.JH570468            630705 102 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576  0 -  80997621 C

a score=37440.000000
s hg38.chr17_JH159148v1_alt    34455 4 +     88070 -GAAG
s panTro5.chr17             16345557 4 +  83181570 -GAAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250178 4 +  83442489 -GAAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097435 4 +   4267968 -GAAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082223 4 -   2193130 -GAAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135493 4 -  77216781 -GAAG
i rheMac8.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104948 4 +  10377808 -GAAG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990256 4 -   8458610 -GAAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934881 4 +  75148670 -GAAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174582 4 +   4244037 -GAAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197626 4 +   4569836 -GAAG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147053 4 - 159171411 -GAAG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1856050 4 +   3513951 -GAAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907188 4 +   1920343 -gaag
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7021120 4 -   7032639 -gaag
i aotNan1.NW_018502359v1    C 0 C 0
s dasNov3.JH570468            630807 4 -    852752 GGAA-
i dasNov3.JH570468          I 102 N 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576 0 -  80997621 C

a score=20055.000000
s hg38.chr17_JH159148v1_alt    34459 2 +     88070 GA
s panTro5.chr17             16345561 2 +  83181570 GA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250182 2 +  83442489 GA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097439 2 +   4267968 GA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082227 2 -   2193130 GA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135497 2 -  77216781 GA
i rheMac8.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104952 2 +  10377808 GA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990260 2 -   8458610 GA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934885 2 +  75148670 GA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174586 2 +   4244037 GA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197630 2 +   4569836 GA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147057 2 - 159171411 GA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1856054 2 +   3513951 GA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907192 2 +   1920343 ga
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7021124 2 -   7032639 ga
i aotNan1.NW_018502359v1    C 0 I 409
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576 0 -  80997621 C

a score=37042.000000
s hg38.chr17_JH159148v1_alt    34461 5 +     88070 AGCCA
s panTro5.chr17             16345563 5 +  83181570 AGCCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250184 5 +  83442489 AGCCA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097441 5 +   4267968 GGCCA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082229 5 -   2193130 GGCTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135499 5 -  77216781 GGCCA
i rheMac8.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104954 5 +  10377808 GGCCA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990262 5 -   8458610 GGCCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934887 5 +  75148670 GGCCA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174588 5 +   4244037 GGCCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197632 5 +   4569836 GGCCA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147059 5 - 159171411 GGCCA
i calJac3.chr5              C 0 I 156
s saiBol1.JH378271           1856056 5 +   3513951 GGCCA
i saiBol1.JH378271          C 0 I 11405
s cebCap1.NW_016107730v1     1907194 5 +   1920343 ggcca
i cebCap1.NW_016107730v1    C 0 I 262
e mm10.chr11                22135123 10168 - 122082543 I
e aotNan1.NW_018502359v1     7021126 409 -   7032639 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576 0 -  80997621 C

a score=20020.000000
s hg38.chr17_JH159148v1_alt    34466 4 +     88070 TATA
s panTro5.chr17             16345568 4 +  83181570 TATA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250189 4 +  83442489 TATA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097446 4 +   4267968 TATA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082234 4 -   2193130 TATA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135504 4 -  77216781 TATA
i rheMac8.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104959 4 +  10377808 TATA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990267 4 -   8458610 TATA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934892 4 +  75148670 TATA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174593 4 +   4244037 TATA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197637 4 +   4569836 TATA
i colAng1.NW_012122154v1    C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e aotNan1.NW_018502359v1     7021126 409 -   7032639 I
e cebCap1.NW_016107730v1     1907199 262 +   1920343 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e saiBol1.JH378271           1856061 11405 +   3513951 I
e calJac3.chr5              46147064 156 - 159171411 I
e macFas5.chr16             28049576 0 -  80997621 C

a score=18072.000000
s hg38.chr17_JH159148v1_alt    34470 3 +     88070 AGA
s panTro5.chr17             16345572 3 +  83181570 AGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250193 3 +  83442489 AGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097450 3 +   4267968 CGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082238 3 -   2193130 AGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135508 3 -  77216781 AGA
i rheMac8.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104963 3 +  10377808 AGA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990271 3 -   8458610 AGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934896 3 +  75148670 AGA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174597 3 +   4244037 AGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197641 3 +   4569836 AGA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147220 3 - 159171411 agg
i calJac3.chr5              I 156 C 0
s saiBol1.JH378271           1867466 3 +   3513951 AGA
i saiBol1.JH378271          I 11405 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e aotNan1.NW_018502359v1     7021126 409 -   7032639 I
e cebCap1.NW_016107730v1     1907199 262 +   1920343 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576 0 -  80997621 C

a score=10231.000000
s hg38.chr17_JH159148v1_alt    34473 2 +     88070 AT
s panTro5.chr17             16345575 2 +  83181570 AT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250196 2 +  83442489 AT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097453 2 +   4267968 AC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082241 2 -   2193130 AT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135511 2 -  77216781 AT
i rheMac8.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104966 2 +  10377808 AT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990274 2 -   8458610 AT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934899 2 +  75148670 AT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174600 2 +   4244037 AT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197644 2 +   4569836 AT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147223 2 - 159171411 ag
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1867469 2 +   3513951 AC
i saiBol1.JH378271          C 0 C 0
s dasNov3.JH570468            498561 2 -    852752 AC
i dasNov3.JH570468          N 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e aotNan1.NW_018502359v1     7021126 409 -   7032639 I
e cebCap1.NW_016107730v1     1907199 262 +   1920343 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576 0 -  80997621 C

a score=8323.000000
s hg38.chr17_JH159148v1_alt    34475 1 +     88070 G
s panTro5.chr17             16345577 1 +  83181570 G
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250198 1 +  83442489 G
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097455 1 +   4267968 A
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082243 1 -   2193130 G
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135513 1 -  77216781 G
i rheMac8.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104968 1 +  10377808 G
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990276 1 -   8458610 G
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934901 1 +  75148670 G
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174602 1 +   4244037 G
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2197646 1 +   4569836 G
i colAng1.NW_012122154v1    C 0 I 5635
s calJac3.chr5              46147225 1 - 159171411 g
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1867471 1 +   3513951 A
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907461 1 +   1920343 g
i cebCap1.NW_016107730v1    I 262 C 0
s aotNan1.NW_018502359v1     7021535 1 -   7032639 g
i aotNan1.NW_018502359v1    I 409 C 0
s dasNov3.JH570468            498563 1 -    852752 G
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576 0 -  80997621 C

a score=12000.000000
s hg38.chr17_JH159148v1_alt    34476 1 +     88070 G
s panTro5.chr17             16345578 1 +  83181570 G
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250199 1 +  83442489 G
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097456 1 +   4267968 G
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082244 1 -   2193130 G
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135514 1 -  77216781 G
i rheMac8.chr16             C 0 C 0
s macNem1.NW_012014910v1     2104969 1 +  10377808 G
i macNem1.NW_012014910v1    C 0 I 16881
s cerAty1.NW_012006043v1     1990277 1 -   8458610 G
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934902 1 +  75148670 G
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174603 1 +   4244037 G
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2203282 1 +   4569836 G
i colAng1.NW_012122154v1    I 5635 C 0
s calJac3.chr5              46147226 1 - 159171411 G
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1867472 1 +   3513951 G
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907462 1 +   1920343 G
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7021536 1 -   7032639 G
i aotNan1.NW_018502359v1    C 0 C 0
s dasNov3.JH570468            498564 1 -    852752 G
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576 0 -  80997621 C

a score=10920.000000
s hg38.chr17_JH159148v1_alt    34477 1 +     88070 A
s panTro5.chr17             16345579 1 +  83181570 A
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250200 1 +  83442489 A
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097457 1 +   4267968 A
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082245 1 -   2193130 A
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30135515 1 -  77216781 A
i rheMac8.chr16             C 0 I 2040
s macNem1.NW_012014910v1     2121851 1 +  10377808 A
i macNem1.NW_012014910v1    I 16881 C 0
s cerAty1.NW_012006043v1     1990278 1 -   8458610 A
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934903 1 +  75148670 A
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174604 1 +   4244037 A
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2203283 1 +   4569836 A
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147227 1 - 159171411 A
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1867473 1 +   3513951 A
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907463 1 +   1920343 A
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7021537 1 -   7032639 A
i aotNan1.NW_018502359v1    C 0 C 0
s dasNov3.JH570468            498565 1 -    852752 A
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576 0 -  80997621 C

a score=58974.000000
s hg38.chr17_JH159148v1_alt    34478 7 +     88070 AATGTTA
s panTro5.chr17             16345580 7 +  83181570 AATGTTA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250201 7 +  83442489 AATGTTA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097458 7 +   4267968 AATGTTA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082246 7 -   2193130 AATGTTA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2121852 7 +  10377808 AATGTTA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990279 7 -   8458610 AACGTTA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934904 7 +  75148670 AACGTTA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174605 7 +   4244037 AACGTTA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2203284 7 +   4569836 AATGTTA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147228 7 - 159171411 AATGTTA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1867474 7 +   3513951 AATGTTA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907464 7 +   1920343 AATGTTA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7021538 7 -   7032639 AATGTTA
i aotNan1.NW_018502359v1    C 0 C 0
s dasNov3.JH570468            498566 7 -    852752 AACATTG
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e canFam3.chr9              39587489 2283 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=84701.000000
s hg38.chr17_JH159148v1_alt    34485 12 +     88070 TCTGCAAATACA--
s panTro5.chr17             16345587 12 +  83181570 TCTGCAAATACA--
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250208 12 +  83442489 TCTGCAAATACA--
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097465 12 +   4267968 TCTGAAAATACA--
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082253 12 -   2193130 TCTGCAAATACA--
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2121859 12 +  10377808 TCTGCCAATATA--
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1990286 12 -   8458610 CCTGCAAATACA--
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64934911 12 +  75148670 CCTGCAAATACA--
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2174612 12 +   4244037 CCTGCAAATACA--
i manLeu1.NW_012106252v1    C 0 I 16645
s colAng1.NW_012122154v1     2203291 12 +   4569836 TCTGTAAATATG--
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147235 12 - 159171411 TCTGCAAATACA--
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1867481 12 +   3513951 TCTGCAAACATG--
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907471 12 +   1920343 TCAGCAAATACA--
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7021545 12 -   7032639 TCTGCAAATACA--
i aotNan1.NW_018502359v1    C 0 C 0
s canFam3.chr9              39589772 12 -  61074082 TCTGCATATATG--
i canFam3.chr9              I 2283 C 0
s dasNov3.JH570468            498573 11 -    852752 ---ACTGATACACA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=94358.000000
s hg38.chr17_JH159148v1_alt    34497 12 +     88070 --GGAGATTATTCC
s panTro5.chr17             16345599 12 +  83181570 --GGAGATTATTCC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250220 12 +  83442489 --GGAGATTATTCC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097477 12 +   4267968 --GGAGATTATTCC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082265 12 -   2193130 --GGAGATTATTCT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2121871 12 +  10377808 --AGTGATTAATCC
i macNem1.NW_012014910v1    C 0 T 6844
s cerAty1.NW_012006043v1     1990298 12 -   8458610 --GGAGATTATTCC
i cerAty1.NW_012006043v1    C 0 I 16105
s chlSab2.chr16             64934923 12 +  75148670 --GGAGATTATTCC
i chlSab2.chr16             C 0 I 10452
s manLeu1.NW_012106252v1     2191269 12 +   4244037 --GGAGATTATTCT
i manLeu1.NW_012106252v1    I 16645 I 1
s colAng1.NW_012122154v1     2203303 12 +   4569836 --AGAGATTATACC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147247 12 - 159171411 --GGAGGTTATTCC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1867493 12 +   3513951 --AGAGATTATACC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907483 12 +   1920343 --GGAGGTTATTCC
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7021557 12 -   7032639 --GGAGGTTATTCC
i aotNan1.NW_018502359v1    C 0 C 0
s canFam3.chr9              39589784 12 -  61074082 --AGGGATTGTTTC
i canFam3.chr9              C 0 I 1
s dasNov3.JH570468            498584 14 -    852752 AAAGTTATTATTTC
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=76201.000000
s hg38.chr17_JH159148v1_alt    34509 16 +     88070 TCCATTGTTA---AGTAAA
s panTro5.chr17             16345611 16 +  83181570 TCCATTGTTA---AGTAAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250232 16 +  83442489 TCCATTGTTA---AGTAAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097489 13 +   4267968 TCC---GTTA---AGTCAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082277 16 -   2193130 TCCATTGTTA---AGTCAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2115039 16 +  10377808 TCCATTGTTA---AATAAA
i macNem1.NW_012014910v1    T 6844 C 0
s cerAty1.NW_012006043v1     2006415 16 -   8458610 TCCATTGTTA---AATAAA
i cerAty1.NW_012006043v1    I 16105 C 0
s chlSab2.chr16             64945387 16 +  75148670 TCCATTGTTA---AATAAA
i chlSab2.chr16             I 10452 C 0
s manLeu1.NW_012106252v1     2191282 16 +   4244037 TCCATTGCTA---AATAAA
i manLeu1.NW_012106252v1    I 1 C 0
s colAng1.NW_012122154v1     2203315 16 +   4569836 TCCCACGTTA---AATAAA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147259 16 - 159171411 TCTATTGATG---AGTAAA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1867505 15 +   3513951 GCCCATGTTC---AAT-AA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907495 16 +   1920343 TCTATTGATG---AGTAAA
i cebCap1.NW_016107730v1    C 0 C 0
s aotNan1.NW_018502359v1     7021569 16 -   7032639 TCTATTAATG---AGTAAA
i aotNan1.NW_018502359v1    C 0 C 0
s canFam3.chr9              39589797 19 -  61074082 TCCATTTGTAAAGAATAAA
i canFam3.chr9              I 1 C 0
s dasNov3.JH570468            498598 15 -    852752 --TCTTGCTAA--AATGGA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=668963.000000
s hg38.chr17_JH159148v1_alt    34525 106 +     88070 ---CTTAAGTGCATAT---CTTGCTAATGCTGA-GT---C-C-CAATATAG--TTTTTTCTT-TATTGAGAGTTAAATGTAAGTGCCTTTGGACAGAAA-AAAAGACCCAACTTTGCATCTG
s panTro5.chr17             16345627 107 +  83181570 ---CTTAAGTGCATAT---CTTGCTAATGCTGA-GT---C-C-CAATATAG--TTTTTTCTT-TATTGAGAGTTAAATGTAAGTGCCCTTGGGCAGAAAGAAAAGACCCAACTTTGCATCTG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250248 107 +  83442489 ---CTTAAGTGCATAT---CTTGCTAATGCTGA-GT---C-C-CAATATAG--TTTTTTCTT-TATTGAGAGTTAAATGTAAGTGCCCTTGGACAGAAAGAAAAGACCCAACTTTGCATCTG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097502 107 +   4267968 ---CTCAAGTCCATGT---CTTGCTAATGCTGA-GT---C-C-CAATGTAA--TTTTTTCTT-TATTGAGAGTTAAATGTATGTGCACTTGGACAGAAAGAGAAGACCCAAGTTTGCATCTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082293 109 -   2193130 ---CTTAAGTCCATAT---CTTGTTAATGCTGA-GT---C-C-CAATATAGTTTTTTTTCTT-TATTGAGAGTCAAATGTAAGTGCCCTTGGACAGAAAGAGAAGACCTAACTTTGCATGTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2115055 107 +  10377808 ---CTCAAGTGCATAA---CTTGCTAGTGCTGA-GT---C-C-CAATGTCA--TTTCTACTT-TATTGAGAGTTAATTGTAAGTGTCTTTGGACAGAAAGAGAAGATGCAATCTTGCATCAG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2006431 107 -   8458610 ---CTCAAGTGCATAA---CTTGCTAGTGCTGA-GT---C-C-CAATGTCA--TTTCTACTT-TATTGAGAGTTAATTGTAAGTGTCTTTGGACAGAAAGAGAAGATGCAATCTTGCATCAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64945403 107 +  75148670 ---CTCAAGTGCATAA---CTTGCTAGTGCTGA-GT---C-C-CAATGTCA--TTTCTACTT-TATTGAGAGTTAATTGTAAGTGTCTTTGGACAGAAAGAGAAGATGCAGTCTTGCATCAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2191298 107 +   4244037 ---CTCAAGTGTGTAA---CTTGCTAGTGCTGA-GT---C-C-CAATGTCA--TTTCTACTT-TATTGAGAGTTAATTGTAAGTGTCTTTGGGCAGAAAGAGAAAATGCAATCTTGCATCAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2203331 107 +   4569836 ---CTTAAGTGCATGT---CTTGCTCTTGCTGA-CT---C-C-CGATATCA--TTTCTACTT-TACTGAGAGTTAAATGTAAATGTTCTTGGGTGGAAAGAGAAGCTCTCCCCTTGGACCAG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147275 108 - 159171411 ---ATTAAGTGCATGT---CTTGCTAATGCTGACATGCAC-T-TAATGTGA--TTTTTACTT-TATTG--AGTTAAAGGTAAGTGCCCTTTAACAGAAGGAGAAGGCCACACCTTGT-TCTG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1867520 107 +   3513951 ---ACTCAGTGCATGT---CTGTTTCTTACTGA-AT---C-C-CAATATCA--TTTCTACCT-TACTGAAAGTTATATAGGAGAGTTCTTGGGCAGAAAGAGAAGATCTCACCTTGGACCTG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907511 105 +   1920343 ---ATTAAGTGCATGT---CTTGCTAATGCTGA-GT---C-C-CAATGTAA--TTTTTACTT-TATTG--AGTTAAATGTAAGTGCCCTTGGACAGAAAGAGAGGACGACACCTTGCATCTG
i cebCap1.NW_016107730v1    C 0 I 5990
s aotNan1.NW_018502359v1     7021585 105 -   7032639 ---ATTAAGTGCATGT---CTTGCTAATGCTGA-GT---C-C-CAATGTAA--TTTTTACTT-CATTG--AGTTAAATGTAAGTGCCCTTGGACAGAAAGATAGGACCATACCTTGCATCTG
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22867408 109 +  28711273 ---CTCAAGTGCACAG---CTCACCAGTTCTCA-TT---CTC-CAGTAGCA--GTTCTAGTTGCTTTGAGATGGACATGCAGGTGCCCTTGAGCAGACACCGCAGACCCAGTCCTGGATGTC
i otoGar3.GL873537          I 5348 C 0
s canFam3.chr9              39589816 108 -  61074082 ---TACATTTGCATAG---CTTACTAGTGTTCA-GT--AC-T-AAATATTA--TTGCTACTTCTATTGACATGTCAATGTGT-TGCCTTTGAGCAGGAACAAATGATCCAATCCTGTATCTA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            498613 115 -    852752 ATTCAGAAGTTCTTGTTCCTCTACTAGCCCTCG-GT---C-TGCAGCACCA--TTTCTCCTTTCACTGAGGTGGAAGTGTAAGAGACCTCCACCAGAAACAGAAGATTCAGTTCTGGATCTG
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e macFas5.chr16             28049576   0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=1099424.000000
s hg38.chr17_JH159148v1_alt    34631 153 +     88070 AGTCTGTCCATTTTTAGCTAAATAACATCACACATTAAAATTTTTTCAGCTG--GAAAGTGGAGGTAATAAAACATGACTGTCTGTTTTGATAATCAAATTAGGTAACAT-----------ACATGGTATGCAATATGTGTGTAAA-TC-CCATATCAGGAATGCTGT
s panTro5.chr17             16345734 153 +  83181570 AGTCTGTCCATTTTTAGCTAAATAACATCACACATTAAaattttctcagctg--gaaagtggaggtaataaaatatgactgtctgttttgataatcaaattagataacat-----------acatgGTATGCAATATGCGTGTAAA-TC-CCATATCAGGAATGCTGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250355 153 +  83442489 AGTCTGTCCATTTTTAGCTAAATAACATCACACATTAAaattttctcagctg--gaaagtggaggtaataaaacatgactgtctgttttgataatcaaattaggtaacat-----------acgtgGTATGCAATATGCGTGTAAA-TC-CCGTATCAGGAATGCTGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097609 153 +   4267968 AGTCTGTCCATTATTAACTAAATAATATCACACATTAAAATTTTCTCAGCTG--GAAAGTGGAAGTAATACAACATGACTGTTTGTTTTGATAATCAAATTAGGTAACAT-----------ATATGGTATGCAATATGTGTGTAAA-TT-CTATATCAGGAATGCCTC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082402 153 -   2193130 AGTCTGTCCATTTTTAGCTAAATAATATTACGCATTAAaattttctcagctg--gaaagtggagataataaaacatgactgtctgttttgataatcaaattaggtaacat-----------atatgGTATGCAATATGTGTGTAAA-TC-CCATATCAGGAATGCTGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2115162 153 +  10377808 AGTCTGTCCACTGTTAGCTACATAACATCACACATTAAAATTTTCCCAGTTG--GAAAATGGAGGCAATAATACACTACTGTCTGTTTTGAGAATCAAATTGGGTAATAC-----------ATACAGTAGGTGATATATGCGTAAA-TC-CCATATCAGGAATGCTTT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2006538 153 -   8458610 AGTCTGTCCACTGTTAGCTACATAACATCACACATTAAaattttcccagttg--gaaaatggaggcaataatacactactgtctgttttgagaatcaaattgggtaatac-----------atataGTAGGTGATACATGCATGAA-TC-CCATATCAGGAATGCTTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64945510 153 +  75148670 AGTCTGTCCACTGTTAGCTACATAACATCACACATTAAaattttcccagttg--gaaaatggaggcaataatacactactgtccgttttgagaatcaaattgggtaatac-----------atataGTAGGTGATACATGCGTAAA-TC-CCATATCAGGAATGCTTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2191405 153 +   4244037 AGTCTGTCCACTGTTAGCTACATAACATCACACATTAAaattttcccagttg--gaaaatggaggcaataatacactactgtctgttttgagaatcaaattgggtaatat-----------atataGTAGGTGATACATGCGTGAA-TC-CCATATCAGGAATGCTTT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2203438 164 +   4569836 AGTCTGTCCTTTATTAGCTACGTAAAATCACACATTAAATTGttctcagctg--aaaaattgaggtaataatacatgactgtctgttttcagaatcaaattggataatacatataGTACATATATAGTATGCAATATGCATGTAAA-TC-CCATATCAACAATTCTGC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147383 153 - 159171411 AGTCTGTCCATTATTAGCTAAATAACATCACACATTAAAATTTTCTCAGCTG--GAAAGTAAAGGTAATAAAACATGACTGTCTGTTTTGATAATCAAATTAGGAAGCAT-----------ATATAGTACACAACATGTGTGTAAA-TC-CCCCATCAGGAATGCTGT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1867627 153 +   3513951 AGTCTGTCCCTTATTAGCTACATCAAATCACACACTAAATTGTTCTCGGTTG--AAAAATTGAGGTAATAACACATGAGCATCTGTTTTCAGAATCAAATTGGATATTAC-----------ATATAGCATGTGATACGTGTGTGGA-CC-ATTTATCAGGAATTCTGT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1913606 153 +   1920343 AGTCTGTCCTTTTTTAGCTACATCAAATCACACAATAAATTGTTCTCAGCTG--AAAAACTGAGGGAATAACACATGACCATCTGTTGTCAGAATCAAATTGGATAATAC-----------GTATAGCATGCAATGTGTGTGTAAA-TT-CCTTTTCAGCAATTCTGT
i cebCap1.NW_016107730v1    I 5990 C 0
s aotNan1.NW_018502359v1     7021690 153 -   7032639 AGTCTGTCCATTATTAGGTAAATAACATCACACATTAAAATTTTCTCAGCTG--GAAAGTAAAGGTAATAAAACATGACTGTCTGTTTTTGTAATCAAATTAGGTAACAT-----------ATATGGTACACAATATGTGTGTAAA-TC-CCCTATCAGGAATGCTGT
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22867517 155 +  28711273 AGTGTGACTATTATTCACTACAAGACATTATGCTATGAAGTTTTCTCATCTGAAAAAAATGATATTAACAATACAAGGGTAACTGTATTGAAAAGAAAAATGGATAATAT-----------ATATGGCATGCCATACGTATACAAG-TTGCTGTATCAGAAA-GAAGT
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              39589924 152 -  61074082 AGTTTATC-ATTATTAACTACATTAAATTACACAGTGAAATATTATCA-CTT--TAAAATGTAGAATATAATTCATGACAGGCTGTTGTGTAGCTCAGGTCAGATAATGC-----------ATATTGTACCCAATATGTATATAAGTTC-CTATATTGGGAATATTGT
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            498728 148 -    852752 AGTCTGTGCATTTTTACCTACATGATTTAACACAAATCAATTTTC-AAATCA--GAAGGGAGAGGCAGTATGTACTGGGTGACTTTTATGAGGCAGTGAATATGTAATGC-----------TTATGG-----GATATGTATATAAAGCC-CTATATCAGAAAGGCCAT
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22135123 10168 - 122082543 I
e macFas5.chr16             28049576   0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=362683.000000
s hg38.chr17_JH159148v1_alt    34784 59 +     88070 --AAAATAAA-AAAAAA--------CACCATGTGA------TAA---GAAGAATGGTTTTGAGTTTATT----AAGAAACATA
s panTro5.chr17             16345887 58 +  83181570 --AAAAT-AA-AAAAAA--------CACCATGTGA------TAA---GAAGAATGGTTTTGAGTTTATT----AAGAAACATA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250508 56 +  83442489 --AAAAT----AAAAAA--------CACCATGTGA------TAA---GAAGAATGGTTTTGAGTTTATT----AAGAAACGTA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097762 60 +   4267968 --AAAAT-AA-AAAAAACC------CACCATGTTA------GAT---GAAGAACAGTTTTGAGTTTATT----AAGAAACATA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082555 58 -   2193130 --AAAAT-AA-AAAAAA--------CACTATGTGA------TAT---GAAGAAAGGTTTTGAGTTTATT----AAGAAACATA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2115315 63 +  10377808 --CAAATAAA-ACAAAG--------CACCATATGT------GAT---GAAGAATGGTTCCGAATTTATTTATTAAGAAATATA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2006691 63 -   8458610 --CAAATAAC-ACAAAG--------CACCATATGT------GAT---GAAGAATGGTTCTGAATTTATTTATTAAGAAATATA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64945663 63 +  75148670 --CAAATAAA-ACAAAG--------CACCATATGT------GAT---GAAGAATGGTTCCGAATTTATTTATTAAGAAATATA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2191558 63 +   4244037 --CAAATAAA-ACAAAG--------CACCATATGT------GAT---GAAGAATGGTTCTGAATTTATTTATTAAGAAATATA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2203602 59 +   4569836 --ACAATAAA-ACAAAA--------CACCATATGA------GAT---GAAGGATGGTTCAGAATTTATTC----AGAAACATA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147536 63 - 159171411 --AAAATAAATATAAAACCC-----CACTATGTAA------GAT---GAAGAATGGTTTTGAGTTTATT----AAGAAATATA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1867780 59 +   3513951 --AGAATAAA-ACAAAA--------CACCATATGA------GAC---GGAGGATGGTTTAGAATTTATT----GAGAAACATA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1913759 59 +   1920343 --AGAATAAA-ACAAAA--------CACCATATGA------GAT---GGAGGATGGTTCAGAATTTATT----TAGAAACATA
i cebCap1.NW_016107730v1    C 0 T 5985
s aotNan1.NW_018502359v1     7021843 68 -   7032639 --AAAATAAATTTAAAAACCCCACTCACTATGTAA------GAT---GAAGAATGGTTTTGAGTTTATT----AAGAAATATA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22867672 59 +  28711273 --ACAATGGA-ACAAAA--------CACAACACGA------GAT---GAATAAAGGCTCACAATTTATT----AAGAAATACT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22145291 53 - 122082543 --AAAATATA-ATGACA--------GACAATATGG------AAT---GAATGGCAGCAGAGAGTTTATT----TGAA------
i mm10.chr11                I 10168 C 0
s canFam3.chr9              39590076 59 -  61074082 --ACAGTAAA-ATAAAA--------CACAATATAG------GGT---GAATTATGATATAGCCTTTATT----AAGAAACATA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            498876 69 -    852752 ACAGCAT-AA-GGGAAA--------CATGACATGGATGACTGATACGGATGAATGGCAGAGAATTTATT----TAGAAATGTG
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=644937.000000
s hg38.chr17_JH159148v1_alt    34843 134 +     88070 TATGTAATGGTCCCTGTTTCTAGGGAGAT-AGCCCAAAATGATCATGAAAAGA-------AGGA---TACAAGAAACACGAGGAGGACATTGAAAATGAAAACATGATTGTGAAGATCATTGAT-------------GAGTTGCA-AAAC------------------------------CT------AAGCTTC
s panTro5.chr17             16345945 134 +  83181570 TATGTAATGGTCCCTGTTTCTAGGGAGAT-AGCCCAAAGTGATCATGAAAAGA-------AGGA---TACAAGAAACACGAGGAGGACATTGAAAATGAAAACATGATTGTGAAGATCATTGAT-------------GAGTTGCA-AAAC------------------------------CT------AAGCTTC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250564 134 +  83442489 TATGTAATGGTCCCTGTTTCTAGGGAGAT-AGCCCAAAGTGATCATGAAAAGA-------AGGA---TACAAGAAACACGAGGAGGACATTGAAAATGAAAACATGATTGTGAAGATCATTGAT-------------GAGTTGCA-AAAC------------------------------CT------AAGCTTC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097822 133 +   4267968 TAGGTACGAATCCCTGTTTCTAGGGAGAT-AACCCAAAATGATCATGAAAAGA-------AGGA---TACAAGAACCATGAGGAGGACATTGAAAATGAAAACATGATTGTGAAGATTATTGAT--------------CGTTGCA-AAAC------------------------------CT------AAGTTTC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082613 147 -   2193130 TATGTAACGGTCCCTGTTTCTAGGGAGAT-AACCCAAAGTGATCATGAAAAGA-------AGGA---TACAAGAAACACGAGGAGGACATTGAAAATGAAAACATGGTTGTGAAGATTATTCATCACAGTAATCTTCAGGTTGCA-AAAC------------------------------CT------AAGCTTC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2115378 137 +  10377808 TAGGTAAG-ATTCCTGGTTCTTGGGAGAT-AGCCCAAAGTGATCATTAAAAGAAGGAAGGAGGA---TACAAGAATCATGAATAT---ATTGAAAA-GAAAACATAGTTGTGAAGATTCTTAAT-------------CATTTGCAGAAAC------------------------------TT------AAGTTTC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2006754 137 -   8458610 TAGGTAAG-ATTCCTGGTTCTCGGGAGAT-AGCCCAAAGTGATCATTAAAAGAAGGAAGGAGGA---TACAAGAATCATGAGTAT---ATTGAAAA-GAAAACATAGTTGTGAAGATTCTTAAT-------------CATTTGCAGAAAC------------------------------TT------AAGTTTC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64945726 137 +  75148670 TAGGTAAG-ATTCCTGGTTCTCGGGAGAT-AGCCCAAAGTGATCATTAAAAGAAGGAAGGAGGA---TACAAGAATCATGAGTAT---ATTGAAAA-GAAAACATAGTTGTGAAGATTCTTAAT-------------CATTTGCAGAAAC------------------------------TT------AAGTTTC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2191621 137 +   4244037 TAGGTAAG-ATTCCTGATTCTCGGGAGAT-AGCCCAAAGTGATCATTAAAAGAAGGAAGGAGGA---TACAAGAATCATGAGTAT---ATTGAAAA-GAAAACATAGTTGTGAAGATTCTTAAT-------------CATTTGCAGAAAC------------------------------TT------AAGTTTC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2203661 142 +   4569836 TAGGTAAGAATTCCTGCTACTAGGGACAT-AGCCCAAAGTTACCATGAAAAGAAGAAAGAAGGG---TAAAAGAACCATGAGCACAAAATTGAAAATGAAAATATGATTGTAAAGGTTGTTGAT-------------CACTTGCAGATAC------------------------------CT------AAGTTTC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147599 133 - 159171411 TAGGCAAAAATTCCTGTTTCTAGGGAGAA-AACCAAAAGTGATCATGAAAAGA----AGAAAGA-----TACGAGCCATGAGGAGGACATCGAAAAGGAAA--AAGACTGTGAAGATTATTGAT-------------CACTTACA-AAAA------------------------------CT------AACTTTC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1867839 141 +   3513951 TAGGTAAGAATCTGTGCTATAAGGGACAT-AGTCCAGAGTTATCATAAAAAGA----AGAAAGAATGGTAAAAAACTGTGAGGAGGAAATTGAAAATGAAAATATGATTGCAAAGATTATGGAT-------------CCATTGCA-GAAA-----------------------------TCT------AAATATT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907833 135 +   1920343 TAGGCAAAAATCCCTGTTTCTAGGGAGAT-AACCAAAAGAAATCATGAAAAGA----AGAAGTA---TACAAGAGCCATGAGGAGGACATTGAAAATGTAA--AAGACTGTGAAGATTATTGAT-------------CACTTACA-AAAA------------------------------CT------AAGTTTC
i cebCap1.NW_016107730v1    T 5985 C 0
s aotNan1.NW_018502359v1     7021911 133 -   7032639 TAGGCAAAAATCCCTGTTTCTAGGGAGAT-AAACGAAAGTGATCATGAAAAGA----AGAAGGA---TACAAGAGCCATGAGGAGGACATTGAAAATGAAA----GACTGTGAAGATTATTGAT-------------CACTTGCA-GAAA------------------------------CT------AAGTTTC
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22867731 142 +  28711273 TAGATAAGAATGTTTG-------------------------ATGATAAAAAGAAGAAAAAAGGA---TATTAAAAATGTGAGTCA---ATTCAAAAAGAAAGCTTGATTATGATAATGATTGGT-------------CAATATCAGAAACC-ATGAAAAGA--TGAGAGGGTTTGTTTTCCT------AAGTTAC
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22145344 119 - 122082543 ---------TTACTTGTTTCTAGTGATACAAATCGGAAGTGAGCA-GAAAGAAGAAAAAGAGTA---CACAAAAATTGGGGGTA----ACCCAGAA-GAAAATACAGGT-TAAATAAAGTTA---------------CATTTTAG-GAAG------------------------------TT------AT-----
i mm10.chr11                C 0 T 12731
s canFam3.chr9              39590135 116 -  61074082 TAAGTAAG-ATACTTGCATCTAAAGATGA-AAGC--------------------------AGGA---GA-AAGAACCACGAGCAC---GTTGAAAA-ATATATATAATTATGAAGTTTATTAAT-------------CAGTTTCAGGAAC------------------------------CTATGAAAAAGTTTT
i canFam3.chr9              C 0 I 23
s dasNov3.JH570468            498945 162 -    852752 TAGATTAGACTACTTGCATCGAGAAAGGC-AACTCAGAGTGATGATGAGAAGAAGAGAGAATGA---CACAGGAATCATGGGtat---attaaaaataaaa---tatttGTGAAGATAATGGAT-----------------TACAGAAGCTGATGAAAAAAATTATGAGTACTTATTTGCTT------AAGTTAC
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28049576   0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=96435.000000
s hg38.chr17_JH159148v1_alt    34977 14 +     88070 TTGGAGAAAGAGAA
s panTro5.chr17             16346079 14 +  83181570 TTGGAGAAAGAGAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250698 14 +  83442489 TTGGAGAAAGAGAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097955 14 +   4267968 TTAGAGAAAGAGAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082760 14 -   2193130 TTAGAGAAAGAGAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2115515 14 +  10377808 TTAGCTGAGGAGAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2006891 14 -   8458610 TTAGGTGAAGAGAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64945863 14 +  75148670 TTAGGTGAAGAGAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2191758 14 +   4244037 TTAGGTGAAGAGAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2203803 14 +   4569836 TTAGAAGGAGAGAA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147732 14 - 159171411 TTAGAGAAAGATAA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1867980 14 +   3513951 TGAGAAACAGAAAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1907968 14 +   1920343 TTAGAGAAAGAGAA
i cebCap1.NW_016107730v1    C 0 I 5990
s aotNan1.NW_018502359v1     7022044 14 -   7032639 TTAGAGAAAGAGAA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22867873 14 +  28711273 TTAGAGGGAGAGAG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22132732 13 - 122082543 TCAGAGAGAAAGA-
i mm10.chr11                T 12731 C 0
s canFam3.chr9              39590274 14 -  61074082 TTAGAGGGAACAGA
i canFam3.chr9              I 23 C 0
s dasNov3.JH570468            499107 12 -    852752 -TAGAGGTGGTGG-
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=647940.000000
s hg38.chr17_JH159148v1_alt    34991 87 +     88070 TGAAGCTCTTGACTTTAGAGTC-AAG-CTGAGACCATGACT-CAAATTGAAAATACATGAGGCTGGCACATGATCTACA----AGGTATAAAGA
s panTro5.chr17             16346093 87 +  83181570 TGAAGCTCTTGACTTTAGAGTC-AAG-CTGAGACCATGACT-CAAATTGGAAATACATGAGGCTGGCACATGATCTACA----AGGTATAAAGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250712 86 +  83442489 TGAAGCTCTTGACTTTAGAGTC-AAG-CTGAGACCATGACT-CAAATTGGAAATACATGAGGCTGGCACATGATCTACA----AGGTATAAAG-
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4097969 88 +   4267968 CGAAGCTCTTGACTTTAAAGTC-AAG-CTGAGACCATGACTCCAAATTGAAAATACATGAAGGTGGCACATGATCCACA----AGGTGTAAAGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082774 88 -   2193130 TGAAGCTCTTGACTTTAGAGTC-AAG-CTGAGACCATCACTCCAAATTGAAAATACATGAGGCTGGCACATGATCTACA----AGGTATAAAGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2115529 88 +  10377808 TGAAGCTCTTGACTTTAGAGTC-AAAAATGAGATTATGACTCCAAATTGAGAACACACAAAGCTGGCACATGATCCACA----AGGTGTA-AGA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2006905 88 -   8458610 TGAAGCTCTTGACTTTAGAGTC-AAAGTTGAGATCATGACTCCAAATTGAGAACACACAAAGCTGGCACATGATCCACA----AGGTGTA-AGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64945877 88 +  75148670 TGAAGCTCTTGACTTTAGAGTC-AAAGTTGAGATCATGACTCCAAATTGAGAACACACAAAGCTGGCACATGATCCACA----AGGTATA-AGA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2191772 88 +   4244037 TGAAGCTCTTGACTTTAGAGTC-AAAGTTGAGATCATGACTCCAAATTGAGAACACACAAAGCTGGCATATGATCCACA----AGGTGTA-AGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2203817 88 +   4569836 TGAAGCTCTTGACTTTAGAGTC-AAA-TGGAGACCACGACCCCACATTGAGAACACATGAAGCTGGCACATGATCCACA----AGGTGTAGGGA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147746 88 - 159171411 TGAAGCTCTTGATTTTAGAGTC-AAG-CTGAGACCATGACTCCAAATTGAAAATACATAAAGCTAGCACATGATCCACA----AAGTGTAAAGA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1867994 89 +   3513951 TGAAGCTCTTGACTTTAGATTCAAAG-CTGAGACCATGACTCCAAACTGAGAACACAGGCAGCTGGCACATGATCCCCA----AAGTGTAAGGA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1913972 89 +   1920343 TGAAGCTTTTGATTTTAGAGTCAAGG-CTGAGACCATGACTCCAACCTGAGGGCACAAGAAGCTGGCCCATGATCCCCA----AAGTGTAAGGA
i cebCap1.NW_016107730v1    I 5990 C 0
s aotNan1.NW_018502359v1     7022058 88 -   7032639 TGAAGCTCTTGATTTTAGAGTC-AAG-CTGAGACCATGACTCCAAATTGAAAATACATGAAGCTAGCACATGACCCACA----AACTGTAAAGA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22867887 89 +  28711273 TGAAGGTCTTGATATTACAGTC-AAAGCCAAGACTGTAACTCCAAAGCAAGAATACAAGAAGCTGGCATGTGATCCCTT----AGGGATGAGGA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22132745 89 - 122082543 TAAAGATCTGGGCTCAGAAGAG-AAG-CTGAAGACTGGCTTCCATATCTG---TCTCTGAAGCCAGCACATGATCTACATTagagagagagaga
i mm10.chr11                C 0 C 0
s canFam3.chr9              39590288 81 -  61074082 ---TGATCCTGACTTCAG-----AAA-CCAAGACGATAACTTAGTATCAAGGATTTATGAAACTGACACAAGATCCACA----TACTTGAAAGG
i canFam3.chr9              C 0 T 3025
s dasNov3.JH570468            499119 76 -    852752 TGAATTTCTTGACGTCAATGTG-AAAGCTGAGGACATTC-------------AGTCATGGCAGTAACACACAATCCAGA----AGACATAAGAA
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=529162.000000
s hg38.chr17_JH159148v1_alt    35078 67 +     88070 AAAAAAGAATCAGGATGAAGTACTCTGCCCTCCCTCAAGCTGATTCACAAG-ATGTTAAACATGCAG-A
s panTro5.chr17             16346180 67 +  83181570 AAAAAAGAATTAGGATGGAGTACTCTGCCCTCCCTCAAGCTGATTCACAAG-ATGTTAAACACGCAG-A
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250798 67 +  83442489 AAAAAAGAATTAGGATGGAGTACTCTGCCCTCCCTCAAGCTGATTCACAAG-ATGTTAAACACGCAG-A
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098057 66 +   4267968 AAAAGAGAATTAGGATGAAGTACTCTACTCTCGCTCAAGCTGATTCAGAAG-ATGTTAAACATGCA--A
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082862 67 -   2193130 AAAAATGAATCAGGATGAAGTACTCTGTCCTCCCTCAAGCTGATTCATAAG-ATGTTAAACACACAG-A
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2115617 67 +  10377808 AAAAGAGAATCAGGACGAAGTATTCTGCCATCCCTGAAGCTGATTCACAAA-ATATTAAACATGCAG-A
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2006993 67 -   8458610 AAAAGAGAATCAGGATGAAGTACTCTGCCGTCCCTGAAGCGGATTCACAAG-ATATTAAACATGCAG-A
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64945965 67 +  75148670 AAAAGAGAATCAGGATGAAGTATTCTGCCGTCCCTGAAGCTGATTCACAAG-ATATTAAACATGCAG-A
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2191860 67 +   4244037 AAAAGAGAATCAGGATGAAGTATTCTGCCGTCCCTGAAGCTGATTCACAAG-ATATTAAACATGCAG-A
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2203905 67 +   4569836 AAAAAAGAATCAGGATGAAGTATTCTGCCCTCCCTCAAGCTGATTCACAAG-ATTTTAAACACGCAA-A
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46147834 67 - 159171411 AAGAGAGAATCAGGCTGAAGTATTCTGCCCTCACTCAAGCTGATTCATAAG-ATGTTAAACATGCAG-A
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868083 67 +   3513951 GA-AGAGAATCAGGACGAAGTACTCTGCCCTCCCGCAAGCTGATTCACCAG-ATTTTAAACATGCAGAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107730v1     1914061 67 +   1920343 GAAAGAGAATCAGGATGAAGTACTCTGCTCTCTCTCAAGCTGATTCACAAG-ATTTTAAACATGCAG-A
i cebCap1.NW_016107730v1    C 0 N 0
s aotNan1.NW_018502359v1     7022146 67 -   7032639 CAGAGAGAATCAGGCTGAAGTATTCTGCCCTCACTCAAGCTGATTTATAAG-ATGTTAAACATGCAG-A
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22867976 67 +  28711273 AGAAGAGAATCAGGAAGAAGTACTCTGCACTTGCTCCACCTGATTCACAAA-GATGTAAAGATATAG-A
i otoGar3.GL873537          C 0 I 1
s mm10.chr11                22132834 66 - 122082543 gagagagagagagagagagagGCCTTACATCCCATCAAAGTAATGAATACG-TTTCCAAA-GTGGTG-A
i mm10.chr11                C 0 I 1
s canFam3.chr9              21491097 61 +  61074082 AGAATACAATCAAATTGAAGTAGATTGCATTTCCTCC-GTAGACTCATGAGCATTGTTGAGA-------
i canFam3.chr9              I 9850 C 0
s dasNov3.JH570468            499195 67 -    852752 AGAAATGAATCTGGGTGCAACAGTCTACAATTTATCAAGCTGATTCACAAG-CTTTTAAACATGCAG-A
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=1637.000000
s hg38.chr17_JH159148v1_alt    35145 3 +     88070 -GAA
s panTro5.chr17             16346247 3 +  83181570 -GAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250865 3 +  83442489 -GAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098123 3 +   4267968 -GAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082929 3 -   2193130 -GAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2115684 3 +  10377808 -GAG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2007060 3 -   8458610 -GAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946032 3 +  75148670 -GAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2191927 3 +   4244037 -GAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2203972 3 +   4569836 -GAA
i colAng1.NW_012122154v1    C 0 I 733
s calJac3.chr5              46147901 3 - 159171411 -GAA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868150 3 +   3513951 -GAA
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7022213 3 -   7032639 -GAA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868044 2 +  28711273 -GA-
i otoGar3.GL873537          I 1 C 0
s mm10.chr11                22132901 2 - 122082543 --AA
i mm10.chr11                I 1 I 1
s canFam3.chr9              21491158 2 +  61074082 --AA
i canFam3.chr9              C 0 I 1
s dasNov3.JH570468            499262 3 -    852752 TGA-
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=116469.000000
s hg38.chr17_JH159148v1_alt    35148 38 +     88070 GTCATAA----AAATTAGGGTG--AGCA--------------------TGCTGGTTGTCAGCAA
s panTro5.chr17             16346250 38 +  83181570 GTCATAA----AAATTAGGGTG--AGCA--------------------TGCTGGTTGTCAGCAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250868 38 +  83442489 GTCATAA----AAATTAGGGTG--AGCA--------------------TGCTGGTTGTCAGCAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098126 58 +   4267968 GTCACAA----AAATTAGGGTG--AGAAGGTTCACCCTAAGTTCATTTTGTTGGTTGTCATCAC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082932 38 -   2193130 GTCATAA----AAACTAGGGTG--AGCA--------------------TGCTGGTTGTCAGCAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2115687 40 +  10377808 TTCATAA----AAATGTGGGCGACAGCA--------------------TGGTGGCTGTCAGCAG
i macNem1.NW_012014910v1    C 0 T 10023
s cerAty1.NW_012006043v1     2007063 40 -   8458610 TTCATTA----AAATGTGGGCGACAGCA--------------------TGGTGGCTGTCAGCAG
i cerAty1.NW_012006043v1    C 0 T 16092
s chlSab2.chr16             64946035 40 +  75148670 CTCATAA----AAATGTGGGCGACAGCA--------------------TGGTGGCTGTCAGCAG
i chlSab2.chr16             C 0 T 10439
s manLeu1.NW_012106252v1     2191930 40 +   4244037 TTCATAA----AAATGTGGGCGACAGCA--------------------TGGTGGCTGTCAGCAG
i manLeu1.NW_012106252v1    C 0 T 16633
s calJac3.chr5              46147904 38 - 159171411 GTCATAA----AAATTAGGGTG--AGCA--------------------TGCTGGTTGTCAGCAA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868153 32 +   3513951 AATAAAAGAAGAAATAGATGAG--AGCA--------------------TACTGT----------
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7022216 38 -   7032639 GTCATAA----AAATTAGGGTG--AACG--------------------TGCTGGTTGTCAGCAA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868046 40 +  28711273 ATAATAG----AAATTATGGTTAAAGCA--------------------TACTGGCCTTCAGAAA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22132904 36 - 122082543 CTCACAT----TAATATGTG----AGCT--------------------TATGTGCACATGGCAA
i mm10.chr11                I 1 C 0
s canFam3.chr9              21491161 35 +  61074082 ---ATGA----CAGGGGCAGTGTAAGCA--------------------TGT--GTTCCCAGGAA
i canFam3.chr9              I 1 C 0
s dasNov3.JH570468            499265 39 -    852752 ---GTAA--CTCTATTTTGTTGAGAGCA--------------------TGCTGAGTGTCAGTAA
i dasNov3.JH570468          C 0 C 0
e colAng1.NW_012122154v1     2203975 733 +   4569836 I
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=149221.000000
s hg38.chr17_JH159148v1_alt    35186 29 +     88070 AGTTT-GAAAGTAAATTTGTCCTCCAAGAG
s panTro5.chr17             16346288 29 +  83181570 AGTTT-GAAAGCAAATTTGTCCTCCAAGAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250906 29 +  83442489 AGTTT-GAAAGCAAATTTGTCCTCCAAGAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098184 29 +   4267968 AGTTT-GAAAGTAAATTTGTCCTCCAAAAG
i gorGor5.CYUI01015385v1    C 0 I 6
s nomLeu3.chrUn_GL397460_1   2082970 29 -   2193130 AGTTT-GAAAGAAAATTTGTCCTCCAAGAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2105704 29 +  10377808 AGTTT-GAAAGTAAATTTGTCCTCTAAAAG
i macNem1.NW_012014910v1    T 10023 C 0
s cerAty1.NW_012006043v1     1991011 29 -   8458610 AGTTT-GAAAGTAAATTTGTCCTCTAAAAG
i cerAty1.NW_012006043v1    T 16092 I 6
s chlSab2.chr16             64935636 29 +  75148670 AGTTT-GAAAGTAAATTTGTCCTCCAAAAG
i chlSab2.chr16             T 10439 C 0
s manLeu1.NW_012106252v1     2175337 29 +   4244037 AGTTT-GAAAGTAAATTTGTCCTCTAAAAG
i manLeu1.NW_012106252v1    T 16633 I 6
s calJac3.chr5              46147942 29 - 159171411 AGTTT-GAAAGTTAATTTGTCCTCCAAGTG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868185 28 +   3513951 -GTTT-GAAAATAAAGTTGTCCCTTGAAAG
i saiBol1.JH378271          C 0 I 305
s aotNan1.NW_018502359v1     7022254 29 -   7032639 AGTTT-GAAAGTAAATTTGTCCTCCAAGTG
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868086 29 +  28711273 AGTTT-AGAAGAGATTTTGTCCCCCATAAG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22132940  9 - 122082543 -------------GATTTGTGT--------
i mm10.chr11                C 0 C 0
s canFam3.chr9              21491196 27 +  61074082 AGCTGAGGGAGTAACT---TCTTGTAAGAC
i canFam3.chr9              C 0 I 8
s dasNov3.JH570468            499304 26 -    852752 AGTCTAGAAAGAGATTTTGTCC---AAGG-
i dasNov3.JH570468          C 0 C 0
e colAng1.NW_012122154v1     2203975 733 +   4569836 I
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=7864.000000
s hg38.chr17_JH159148v1_alt    35215  9 +     88070 GAGGACAGA-
s panTro5.chr17             16346317  9 +  83181570 GAGGACAGA-
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250935  9 +  83442489 GAGGACAGA-
i panPan2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1   2082999  9 -   2193130 GAGGACAGA-
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2105733  5 +  10377808 ----ATAAA-
i macNem1.NW_012014910v1    C 0 I 3
s chlSab2.chr16             64935665  5 +  75148670 ----ATAAA-
i chlSab2.chr16             C 0 I 4
s calJac3.chr5              46147971  9 - 159171411 GAGGACAGA-
i calJac3.chr5              C 0 C 0
s aotNan1.NW_018502359v1     7022283  9 -   7032639 GAGGACAGA-
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868115  5 +  28711273 ----ATAAG-
i otoGar3.GL873537          C 0 I 1
s mm10.chr11                22132949  6 - 122082543 ---GACAGA-
i mm10.chr11                C 0 C 0
s canFam3.chr9              21491231  7 +  61074082 TGGGAAA---
i canFam3.chr9              I 8 I 1
s dasNov3.JH570468            499330 10 -    852752 AATGACGCGT
i dasNov3.JH570468          C 0 C 0
e manLeu1.NW_012106252v1     2175366  6 +   4244037 I
e saiBol1.JH378271           1868213 305 +   3513951 I
e colAng1.NW_012122154v1     2203975 733 +   4569836 I
e cerAty1.NW_012006043v1     1991040  6 -   8458610 I
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I
e gorGor5.CYUI01015385v1     4098213  6 +   4267968 I

a score=6770.000000
s hg38.chr17_JH159148v1_alt    35224 5 +     88070 AGGTT
s panTro5.chr17             16346326 5 +  83181570 AGGTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250944 5 +  83442489 AGGTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098219 5 +   4267968 CAGTT
i gorGor5.CYUI01015385v1    I 6 C 0
s nomLeu3.chrUn_GL397460_1   2083008 5 -   2193130 AGGTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2105741 3 +  10377808 --GTT
i macNem1.NW_012014910v1    I 3 C 0
s cerAty1.NW_012006043v1     1991046 5 -   8458610 CTGTT
i cerAty1.NW_012006043v1    I 6 C 0
s chlSab2.chr16             64935674 2 +  75148670 ---TT
i chlSab2.chr16             I 4 C 0
s manLeu1.NW_012106252v1     2175372 5 +   4244037 CTGTT
i manLeu1.NW_012106252v1    I 6 C 0
s calJac3.chr5              46147980 5 - 159171411 AGGTT
i calJac3.chr5              C 0 C 0
s aotNan1.NW_018502359v1     7022292 5 -   7032639 AGGTT
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868121 4 +  28711273 -CATT
i otoGar3.GL873537          I 1 I 1
s mm10.chr11                22132955 4 - 122082543 -AGTA
i mm10.chr11                C 0 I 1
s canFam3.chr9              21491239 4 +  61074082 TGGC-
i canFam3.chr9              I 1 C 0
s dasNov3.JH570468            499340 5 -    852752 CAGTT
i dasNov3.JH570468          C 0 C 0
e saiBol1.JH378271           1868213 305 +   3513951 I
e colAng1.NW_012122154v1     2203975 733 +   4569836 I
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=12000.000000
s hg38.chr17_JH159148v1_alt    35229 1 +     88070 G
s panTro5.chr17             16346331 1 +  83181570 G
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250949 1 +  83442489 G
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098224 1 +   4267968 G
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083013 1 -   2193130 G
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2105744 1 +  10377808 G
i macNem1.NW_012014910v1    C 0 I 10019
s cerAty1.NW_012006043v1     1991051 1 -   8458610 G
i cerAty1.NW_012006043v1    C 0 I 16088
s chlSab2.chr16             64935676 1 +  75148670 G
i chlSab2.chr16             C 0 I 10435
s manLeu1.NW_012106252v1     2175377 1 +   4244037 G
i manLeu1.NW_012106252v1    C 0 I 16629
s calJac3.chr5              46147985 1 - 159171411 G
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868518 1 +   3513951 G
i saiBol1.JH378271          I 305 C 0
s aotNan1.NW_018502359v1     7022297 1 -   7032639 G
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868126 1 +  28711273 G
i otoGar3.GL873537          I 1 I 1
s mm10.chr11                22132960 1 - 122082543 G
i mm10.chr11                I 1 I 4
s canFam3.chr9              21491243 1 +  61074082 G
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            499345 1 -    852752 G
i dasNov3.JH570468          C 0 C 0
e colAng1.NW_012122154v1     2203975 733 +   4569836 I
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=-8533.000000
s hg38.chr17_JH159148v1_alt    35230 1 +     88070 -C
s panTro5.chr17             16346332 1 +  83181570 -C
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250950 1 +  83442489 -C
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098225 1 +   4267968 -C
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083014 1 -   2193130 -C
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2115764 1 +  10377808 -G
i macNem1.NW_012014910v1    I 10019 C 0
s cerAty1.NW_012006043v1     2007140 1 -   8458610 -G
i cerAty1.NW_012006043v1    I 16088 C 0
s chlSab2.chr16             64946112 1 +  75148670 -G
i chlSab2.chr16             I 10435 C 0
s manLeu1.NW_012106252v1     2192007 1 +   4244037 -G
i manLeu1.NW_012106252v1    I 16629 C 0
s calJac3.chr5              46147986 1 - 159171411 -T
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868519 1 +   3513951 -T
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018502359v1     7022298 1 -   7032639 -C
i aotNan1.NW_018502359v1    C 0 C 0
s canFam3.chr9              21491244 1 +  61074082 -T
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            499346 1 -    852752 A-
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22132961 4 - 122082543 I
e otoGar3.GL873537          22868127 1 +  28711273 I
e colAng1.NW_012122154v1     2203975 733 +   4569836 I
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=253819.000000
s hg38.chr17_JH159148v1_alt    35231 43 +     88070 CAGAAGGTTGCTGTGTGAGGATGGTGGTCCTCTGGAGAGTTGG
s panTro5.chr17             16346333 43 +  83181570 CAGAAGGTTGCTGTGTGAGGATGATGGTCCTCTGGAGAGTTGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250951 43 +  83442489 CAGAAGGTTGCTGTGTGAGGATGATGGTCCTCTGGAGAGTTGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098226 43 +   4267968 CAGAGGGTTATTGTGTGAGGATGATGGTCCTCTGGAGAGTTGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083015 43 -   2193130 CAGAAGGTTGTTGTGTGAGGATGATGGTCCTCTGGAGAGTTGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2115765 43 +  10377808 CAGAAAGTTGTTGTGAGAAGATAGTGGTTCTCTTGGGAGCTGA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2007141 43 -   8458610 CAGAAAGTTGTTGTGTGAGGACGGTGGTTCTCTTGGGAGTTGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946113 43 +  75148670 CAGAAAGTTGTTGTGAGAAGATAGTGGTTCTCTTGGGAATTGA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192008 43 +   4244037 CAGAAAGTTGTTGTGAGAAGATGGTGGTTCTCTTGGGAGTTGA
i manLeu1.NW_012106252v1    C 0 C 0
s calJac3.chr5              46147987 43 - 159171411 CAGAGCGCCGTCTTGTGAGGATGATGGTCCTTTTGGGAACTGA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868520 43 +   3513951 CAGAAGGTTGTTGTGTAAGGATGATGGTCCTTGGCAATGCTGA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        4672 43 -   4077172 CAGAAGGTTGTTGTGTTAGGATGATGGTCTTTGGCAATGCTGA
i cebCap1.NW_016107543v1    N 0 C 0
s aotNan1.NW_018502359v1     7022299 43 -   7032639 CAGAACGTTGTCTTGTGAGGATGATGGTCCTTTTGGGAGTTGA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868128 43 +  28711273 TAAAAGATTGTTGTGTGATGATGATGGTCTTTTGGAGAGTGGA
i otoGar3.GL873537          I 1 C 0
s mm10.chr11                22132965 43 - 122082543 TGTGGTATTGTTCAGTTGGAAAGTTGATCAGTAGCAGGGTTTG
i mm10.chr11                I 4 I 14
s canFam3.chr9              21491245 42 +  61074082 -AGGATATATACTCCAGTGAGTGCTGAGTCTATGGCAAGTTGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            499347 42 -    852752 TAGAGGGTTGGTCTGTGCACATGGTGGTT-TTTGATGAGGTGA
i dasNov3.JH570468          C 0 C 0
e colAng1.NW_012122154v1     2203975 733 +   4569836 I
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=577152.000000
s hg38.chr17_JH159148v1_alt    35274 60 +     88070 TCAGCAGCAAGAAGGCTGACAGCAGCTGATCACAGAA------------------GTGGGCTGGAAGCAAGTGGTCCT
s panTro5.chr17             16346376 60 +  83181570 TCAGCAGCAAGAAGGCTGACAGCAGCTGATCACAGAA------------------GTGGGCTGGAAGCAAGTGGTCCT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16250994 60 +  83442489 TCAGCAGCAAGAAGGCTGACAGCAGCTGATCACAGAA------------------GTGGGCTGGAAGCAAGTGGTCCT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098269 60 +   4267968 TCAGCAGCAAGAAGGCTGACAGCAGCTGATCACAGAA------------------GTGGGCTGGAAGCAAGTGGTCCT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083058 60 -   2193130 TCAGCAGCAAGAAGGCTGACAGCAGCTGATCACAGAA------------------GTGGGCTGGAAGCAAGTGGTCCT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2115808 60 +  10377808 TCAGCAGCAAGAAGGCTGGCAGCAGCTGGACACACAG------------------GTGGGCTGGAAGCAAGTGGTCCT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2007184 60 -   8458610 TCAGCAGCAAGAAGGCTGGCAGCAGCTGGACACACAG------------------GTGGGCTGGAAGCAAGTGGTCCT
i cerAty1.NW_012006043v1    C 0 T 10032
s chlSab2.chr16             64946156 60 +  75148670 TCAGCAGCAAGAAGGCTGGCAGCAGCTGGACACACAG------------------GTGGGCTGGAAGCAAGTGGTCCT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192051 60 +   4244037 TCAGCAGCAAGAAGGCTGGCAGCAGCTGGACACACAG------------------GTGGGCTGGAAGCAAGTGGTCCT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204708 60 +   4569836 TCAGCAGCAAACAGGCTGGCAGCAGCTGCTCACACAG------------------GTGGGCTGGAAGCAAGTGGTCCT
i colAng1.NW_012122154v1    I 733 C 0
s calJac3.chr5              46148030 45 - 159171411 TCAGCAGCAAGAAGGCTGGCAGCAGCTGGTCACACAG------------------GTGGGCTG---------------
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868563 60 +   3513951 TCAGCAGCAGGAAGGCTGGCAGCAGCTGGACACACAG------------------GTGGGTTGGCAGCATGTGGTCCT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        4715 60 -   4077172 TCAGCACCAGGAAGGTTGGCAGCAGCTGGACACACAG------------------GTGGGCTGGCAGCAGGTGGTCCT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7022342 60 -   7032639 TCAGCAGCAAGAAGGCTGGCAGCAGCTGGACACACAG------------------GTGGGTTGACAGCAGGTGGTCCT
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868171 30 +  28711273 TCAGCAGCGGGAAGGCTGGCAGCAGCTAGG------------------------------------------------
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22133022 60 - 122082543 ACAGCAGCAGGGTGGGCTGCAGCAGCTGGTCACACAG------------------GCTGGCTTACAGCAGGTGCTCCT
i mm10.chr11                I 14 C 0
s canFam3.chr9              21491287 63 +  61074082 TCAGCAGCAGCAAGGCTGGCAGCAGCTAGACACACAG---------------CATGTGGGCTTGCAGCAGGTGGTCCT
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            499389 78 -    852752 TCAGCAGCAGGAAGGCTGACAGCAATTGGACACACAGCAAGGGCTGCTGCAGCAGCTGGGGCGGCAGCAGGTGGTTCC
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=474650.000000
s hg38.chr17_JH159148v1_alt    35334 43 +     88070 GCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG---GGCTGG
s panTro5.chr17             16346436 43 +  83181570 GCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG---GGCTGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251054 43 +  83442489 GCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG---GGCTGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098329 43 +   4267968 GCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG---GGCTGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083118 43 -   2193130 GCAGCACGTGGTCTCACAGCAGGCTGGGCGGCAGCAG---GGCTGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2115868 43 +  10377808 GCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG---GGCTGG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997212 43 -   8458610 GCAGCAGGTGGACACACAGCAGGCTGGGCGGCAGCAG---GGCTGG
i cerAty1.NW_012006043v1    T 10032 C 0
s chlSab2.chr16             64946216 43 +  75148670 GCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG---GGCTGG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192111 43 +   4244037 GCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG---GGCTGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204768 43 +   4569836 GCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG---GGCTGG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148075 43 - 159171411 GCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAACAG---GGCTGG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868623 43 +   3513951 GCAGCAGGTGGTCTCACAGCAGGCTGGGTGGCAGCAG---GGCTGG
i saiBol1.JH378271          C 0 T 5783
s cebCap1.NW_016107543v1        4775 43 -   4077172 GCAGCAGGTCGTCTCACAGCTGGCTGGGCGGCAGCAG---GGCTGG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7022402 43 -   7032639 GCAGCAGGTGGTCTCACAGCAGGCTGGACGGCAGCAG---GGCTGG
i aotNan1.NW_018502359v1    C 0 C 0
s mm10.chr11                22133082 31 - 122082543 ACAGCAGGTGGTTTCACA------------GCAGCTG---GGCTGG
i mm10.chr11                C 0 C 0
s canFam3.chr9              21491350 46 +  61074082 GCAGCAGGTGGTGTGACAGCACGTTGGGCGGCAGCAGCAAGGCTGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            499467 43 -    852752 ACAGCAGGTGGTCTGACAGCAGGAGGGGCGGCAGCAG---GACTGG
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22868201  0 +  28711273 C
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=128136.000000
s hg38.chr17_JH159148v1_alt    35377 10 +     88070 CAGCAGCTGG
s panTro5.chr17             16346479 10 +  83181570 CAGCAGCTGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251097 10 +  83442489 CAGCAGCTGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098372 10 +   4267968 CAGCAGCTGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083161 10 -   2193130 CAGCAGCTGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2115911 10 +  10377808 CAGCAGCTGG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997255 10 -   8458610 CAGCAGCTGG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946259 10 +  75148670 CAGCAGCTGG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192154 10 +   4244037 CAGCAGCTGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204811 10 +   4569836 CAGCAGCTGG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148118 10 - 159171411 CAGCAACTGG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1862883 10 +   3513951 CAGCAGCTGG
i saiBol1.JH378271          T 5783 C 0
s cebCap1.NW_016107543v1        4818 10 -   4077172 CAGCAGCTGG
i cebCap1.NW_016107543v1    C 0 I 88
s aotNan1.NW_018502359v1     7022445 10 -   7032639 CAGCAGCTGG
i aotNan1.NW_018502359v1    C 0 C 0
s mm10.chr11                22133113 10 - 122082543 CAGCAGCTGG
i mm10.chr11                C 0 C 0
s canFam3.chr9              21491396 10 +  61074082 CAGCAGCTGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            499510 10 -    852752 CAGCAGTTGG
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22868201  0 +  28711273 C
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=845585.000000
s hg38.chr17_JH159148v1_alt    35387 125 +     88070 AGCCACAGCTCTGATTTAGGCAACCAGGCAGGCAGACACTCGTGGGGTGGTAGCAGGTTCTCCTGCAGTAGATGGGTGCACAGGAGCTGGGCTGG------------------------------------------CAGCAGCTGGACCCA---CAGAT----GA-T--TTGGCCA
s panTro5.chr17             16346489 125 +  83181570 AGCCACAGCTCTGGTTGAGGCAACCAGGCAGGTAGACAGTCGTGGGGTGGTAGCAGGTTCTCCTGCAGTAGACGGGTGCACAGGAGCTGGGCTGG------------------------------------------CAGAAGCTGGACCCA---CAGCT----GG-T--TTGGCCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251107 126 +  83442489 AGCCACAGCTCTGGTTGAGGCAACCAGGCAGGTAGACAGTCATGGGGTGGTAGCAGGTTCTCCTGCAGTAGACGGGTGCACAGGAGCTGGGCTGG------------------------------------------CAGCAGCTGGACCCA---CAGCT----GGTT--TTGGCCA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098382 125 +   4267968 AACCACAGCTCTGATTTAGGCAACCAGGCAGGCAGACACTCGTGGGGTGGTAGCAGGTTCTTCTGCAGTAGACGGGTGCACAGGAGCTGGGCTGG------------------------------------------CAGCAGCTGGACCCA---CAGCT----GG-T--TTGGCCA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083171 125 -   2193130 AGCCACAGCTCTGGTTTAGGCAACCAGGCAGACAGACACATGTGGGGTGGTAGCAGGTTCTCCTGCAGTAGACGGGTGCACAGGAGCTGGGCTGG------------------------------------------CAGCAGCTGGACCCA---CAGCT----GG-T--TTGGCCA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2115921 125 +  10377808 ATCCATAGCTCTGGTTTAGGCAACCAGGCAGGCAGACATATGTGGGGTGGTAGCAGGTTCTTCTGCAGTAGACAGGTGCACAGGAGCTGGTCTGG------------------------------------------TCACAGCTGGACCCA---CAGCT----GG-T--TTGGTCA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997265 113 -   8458610 ATCCACAGCTCTGGTTTAGGCAACCAGACAGGCAGATGCATGTAGGGTGGTAGCAGGTTCTCCTGCAGTAGACAGGTGCACAGGAGCTGGTTTGG------------------------------------------------------CCA---CAGCT----GG-T--TTGGCCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946269 108 +  75148670 ATCCATAGCTCTGATTTAGGCAACCAGGCAGGCAGACACATGTGGGGTGGTAGCAGGTTCTTCTGCAGTAGACAGGTGCACAGGAGCTGGTCTGG------------------------------------------CCACAGCTGGACC---------------------------
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192164 125 +   4244037 ATCCATAGCTCTGGTTTAGGCAACCAGGCAGGCAGACACTTGTGGGGTGGTAGCAGGTTCTTCTGCAGTAGACAGGTGCACAGGAGCTGGTCTGG------------------------------------------CCACAGCTGGACCCA---CAGTT----GG-T--TTGGCCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204821 125 +   4569836 AGCCACAGCTCTGGTCTAGGCAACCAGGCAGGCAGACACATGTGGGATGGTAGCAGGTTCTCCTGCAGTAGACAGGTGCACAGGAGCTGGGCTGG------------------------------------------CCACAGCTGGACCCA---CAGTT----GG-C--TTGCCCA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148128 125 - 159171411 ATCCACAGCTCTGGTTTAGGCAGCCAGGCAGGCAGACACACGTGGGGTGGTAGCAGGTCCTCGTGCAGTACACAGGTGCACAGGAGCTGGTCTGA------------------------------------------CCACAGCTGGACCCA---CAGCT----GG-T--CTGGCCA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1862893 125 +   3513951 ATCCACAGCTCTGGTTCAGGCAACCGGGCAGGCGGACACATGTGGGGTGGTAGCAGGTTCTTGTGCAGTACACAGGGGCACAGGAGCTGTTCTGA------------------------------------------CCACAGCTGGACCCA---CAGCT----GG-T--TTGGCCA
i saiBol1.JH378271          C 0 I 5648
s aotNan1.NW_018502359v1     7022455 125 -   7032639 ATCCACAGCTCTGGTTTAGGCAACCAGGCAGGCAGACACACGTGGGGTGGTAGCAGGTTCTCCTGCAGTACACAGGTGCACAGGAGCTGGTCTGG------------------------------------------CCACAGCTGGACCCA---CAGCT----GG-T--TTGGCCA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868201 155 +  28711273 --------------TTCAGACAGCCAGGCAGGCAGACGCAGGTGGGCTGGTAGCAGGTCCTGGTGCAGTAGACAGGTGCACAGCTGCTGGGCTGGCAGCAGGGTGTGCTGCAGCAGGTGATGACAGAGGTGGGTTGCCAGCAGGTGGTCTTA---CAGCA----GG-TGGTTGGACA
i otoGar3.GL873537          C 0 I 23
s mm10.chr11                22133123 137 - 122082543 --------------TT-------------------ACACAGGTTGGCTTACAGCAGGTGGTCCTACAACAGGTGGTTTCACAGCAGCTGGGCTGGCAGCATGGTGGGCTGTAGCAGCTGGTCACACAGACTGGTTTGCAACAAGTGGTTTCACAGCAGCT----GG-G--TTGGCAG
i mm10.chr11                C 0 I 24
s canFam3.chr9              21491406  65 +  61074082 ------------------------------------------------------------ACCCGCAGCCACTGGACCCACAGCAGCTGGGCTGG------------------------------------------CAGCAGCTGGACACA---CAGCATGTGGG-C--TTG----
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            499520 155 -    852752 ATCCAAAGCTCTGGGGTTGGCAGCCAGGCAGGCAGCAGCATGTTGGGTGGTAGCAGGTTCTCCTGCAGTACACGGGGCCACTGCAAGCTGGCTGGCAGCAGGTTGTGTAGCAGCAATTGGGGCGG------------CAGCAGCTGGAGCCA---CCACA----GG-T--TTGGCCA
i dasNov3.JH570468          C 0 C 0
e cebCap1.NW_016107543v1        4828  88 -   4077172 I
e macFas5.chr16             28049576   0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=296690.000000
s hg38.chr17_JH159148v1_alt    35512  47 +     88070 CAGCAGCTGGACC---------------------------------------------------------------------------------------------------CACAGCAGGTGGGC-------------------TGTTAGCAGGGTGTGCTGCA
s panTro5.chr17             16346614  47 +  83181570 CAGCAGCTGGACC---------------------------------------------------------------------------------------------------CACAGCAGGAGGGC-------------------TGGCAGCAGGGTGTGCTGCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251233  48 +  83442489 CAGCAGCTGGACC---------------------------------------------------------------------------------------------------CACAGCAGGAGGGCNNNNNNNNNNNNNNNNNNNNG------------------
i panPan2.chr17             C 0 I 5951
s gorGor5.CYUI01015385v1     4098507  47 +   4267968 CAGCAGCTGGACC---------------------------------------------------------------------------------------------------CACAGCAGGTGGGC-------------------TGGCAGCAGGGTGTGCTGCA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083296  47 -   2193130 CAGCAGCTGGACC---------------------------------------------------------------------------------------------------CACAGCAGGTGGGC-------------------TGGCAGCAGGGTGTGCTGCA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2116046  47 +  10377808 CAGTAGCTGGACC---------------------------------------------------------------------------------------------------CACAGCAGGTGGGC-------------------TGGCAGCAGGGTGTGCTGCA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997378  47 -   8458610 CAGCAGCTGGACC---------------------------------------------------------------------------------------------------CACAGCAGGTGGGC-------------------TGGCAGCAGGGTGTGCTGCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946377  34 +  75148670 ----------------------------------------------------------------------------------------------------------------CACAGCAGGTGGGC-------------------TGGCAGCAGGGTGTGCTGCA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192289 146 +   4244037 CAGCAGCTGGACCCACAGCAGGTGGGCTGGCAGCAGCTGGTCACACAGGTGGGCTGGCAGCAGGTGTTTTGACAGCAAATTGGGTGGCAGCAAGGCTGGCAGCAGCTGGACACACAGCAGGTGGGC-------------------TGGCAGCAGGGTGTGCTGCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204946  47 +   4569836 CAGCAGCTGGACC---------------------------------------------------------------------------------------------------CAAAGCAGGTGGGC-------------------TGGCAGCAGGGTGTGCTGCA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148253  47 - 159171411 CAGCAGCTGGACC---------------------------------------------------------------------------------------------------TACAACAGGTGGGC-------------------TGGCAGCAGGGTGTGCTGCA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868666  44 +   3513951 CAGCAGCTGGACA---------------------------------------------------------------------------------------------------CACAGCAGGAGGGC-------------------TGGCAGCAGGGTGTGCT---
i saiBol1.JH378271          I 5648 C 0
s aotNan1.NW_018502359v1     7022580  47 -   7032639 CAGCAGCTGGACC---------------------------------------------------------------------------------------------------TACAGCAGGTGGGC-------------------TGGCAGCAGGGTTTGCTGCA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868379  29 +  28711273 ---------------------------------------------------------------------------------------------------------------------CAGTGGGGC-------------------TGGCAACAGGGTGTGCTGCA
i otoGar3.GL873537          I 23 C 0
s mm10.chr11                22133284  32 - 122082543 CAGCAGGTGGTCC---------------------------------------------------------------------------------------------------TACAGCAGGTGGTT-------------------TCACA---------------
i mm10.chr11                I 24 C 0
s canFam3.chr9              21491471  47 +  61074082 CAGCACGTGGTCC---------------------------------------------------------------------------------------------------TGCAGCAGGTGGTG-------------------TGACAGCACGTTGGGCGGCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            499675  47 -    852752 CAGGAGCTGGACC---------------------------------------------------------------------------------------------------CACAGCAGGTGGGC-------------------TGGCAGCAGGGAGTGGTGCA
i dasNov3.JH570468          C 0 C 0
e cebCap1.NW_016107543v1        4828  88 -   4077172 I
e macFas5.chr16             28049576   0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=10035.000000
s hg38.chr17_JH159148v1_alt    35559 1 +     88070 G
s panTro5.chr17             16346661 1 +  83181570 G
i panTro5.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098554 1 +   4267968 G
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083343 1 -   2193130 G
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2116093 1 +  10377808 G
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997425 1 -   8458610 G
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946411 1 +  75148670 G
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192435 1 +   4244037 G
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204993 1 +   4569836 G
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148300 1 - 159171411 G
i calJac3.chr5              C 0 C 0
s cebCap1.NW_016107543v1        4916 1 -   4077172 G
i cebCap1.NW_016107543v1    I 88 C 0
s aotNan1.NW_018502359v1     7022627 1 -   7032639 G
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868408 1 +  28711273 G
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22133316 1 - 122082543 G
i mm10.chr11                C 0 C 0
s canFam3.chr9              21491518 1 +  61074082 G
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            499722 1 -    852752 A
i dasNov3.JH570468          C 0 C 0
e saiBol1.JH378271           1868710 0 +   3513951 C
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I
e panPan2.chr17             16251281 5951 +  83442489 I

a score=477505.000000
s hg38.chr17_JH159148v1_alt    35560 51 +     88070 CAGGAAGGCTGGCAGCAGCTGGTCACACAG------------------------------------------------GTGGGCTGGCAGCAGGTGGTC
s panTro5.chr17             16346662 51 +  83181570 CAGGAAGGCTGGCAGCAGCTGGTCACACAG------------------------------------------------GTGGGCTGGCAGCAGGTGGTC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16257232 51 +  83442489 CAGGAAGGCTGGCAACAGCTGGTCACACAG------------------------------------------------GTGGGCTGGCAGCAGGTGGTC
i panPan2.chr17             I 5951 C 0
s gorGor5.CYUI01015385v1     4098555 51 +   4267968 CAGGAAGGCTGGCAGCAGCTGGTCACACAG------------------------------------------------CTGGGCTGGCAGCAGGTGGTC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083344 51 -   2193130 CAGGAAGGCTGGCAGCAGCTGGTCACACAG------------------------------------------------GTCGGCTGGCAGCAGGTGGTC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2116094 45 +  10377808 CAGGAAGGCTGGCAGCAGCTGGTCACACAG------------------------------------------------GTGGGCTGGCAGCAG------
i macNem1.NW_012014910v1    C 0 T 9959
s cerAty1.NW_012006043v1     1997426 51 -   8458610 CAGGAAGGCTGGCAGCAGCTGGTCACACAA------------------------------------------------ATGGGCTGGCAGCAGGTGGTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946412 45 +  75148670 CAGGAAGGCTGGCAGCAGCTGGTCACACAG------------------------------------------------GTGGGCTGGCAGCAG------
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192436 45 +   4244037 CAGGAAGGCTGGCAGCAGCTGGTCACACAG------------------------------------------------GTGGGCTGGCAGCAG------
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204994 45 +   4569836 CAGGAAGTCCGGCAGCAGCTGGTCACACAG------------------------------------------------ATGGGCTGGCAGCAG------
i colAng1.NW_012122154v1    C 0 I 3
s calJac3.chr5              46148301 51 - 159171411 CAGGAAGGCTGGCAGCAGGTGGTCACACAG------------------------------------------------GTGGGCTGGCAGCAGCTGGAC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868710 40 +   3513951 -----------GCTGCAGCTGGTCACACAG------------------------------------------------GTGGGCTTCCAGCAGGTAGTC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        4917 51 -   4077172 CAGCAAGGCTGGCAGCAGCTGGACACACAG------------------------------------------------GTGGGCTGGCAGCAGGTGGTC
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7022628 51 -   7032639 CAGGAAGGCTGGCAGCAGCTGGTCACACAG------------------------------------------------GTGGGCTGGCAGCAGCTGGTC
i aotNan1.NW_018502359v1    C 0 I 37
s otoGar3.GL873537          22868409 36 +  28711273 ---------------TAGGTGGTCTCACAT------------------------------------------------GTTGGCCACCAGCAGGTGGTC
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22133317 51 - 122082543 CAGCTGGGTTGGCAGCAGCTGATCACACAG------------------------------------------------GTTGGTTTACAGCAGGTGGTC
i mm10.chr11                C 0 C 0
s canFam3.chr9              21491519 99 +  61074082 CAGCAAGGCTGGCAGCAGCTGGACCCGCAGCCACTGGACCCACAGCAGCTGGGCTGGCAGCAGCTGGACACACAGCATGTGGGCTTGCAGCATGTGGTC
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            499723 51 -    852752 CAGGAAGGGCGGCAGCAGCTGGTCACACAG------------------------------------------------GTTGGCTGGCAGCAGGTGGTC
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=57268.000000
s hg38.chr17_JH159148v1_alt    35611 9 +     88070 CTGCAGCAG
s panTro5.chr17             16346713 9 +  83181570 CTGCAGCAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16257283 9 +  83442489 CTGCAGCAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098606 9 +   4267968 CTGCAGCAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083395 9 -   2193130 CTACAGCAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1997477 9 -   8458610 CTACAGCAG
i cerAty1.NW_012006043v1    C 0 C 0
s calJac3.chr5              46148352 9 - 159171411 ACACAGCAG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868750 9 +   3513951 CTGCAGCAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        4968 9 -   4077172 CTGCAGCAG
i cebCap1.NW_016107543v1    C 0 C 0
s otoGar3.GL873537          22868445 9 +  28711273 CTGCGGCAG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22133368 9 - 122082543 CTACAGCAG
i mm10.chr11                C 0 C 0
s canFam3.chr9              21491618 9 +  61074082 CTGCAGCAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            499774 9 -    852752 CTACAGCAG
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7022679 37 -   7032639 I
e manLeu1.NW_012106252v1     2192481 0 +   4244037 C
e colAng1.NW_012122154v1     2205039 3 +   4569836 I
e chlSab2.chr16             64946457 0 +  75148670 C
e macNem1.NW_012014910v1     2116139 9959 +  10377808 T
e macFas5.chr16             28049576 0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=120824.000000
s hg38.chr17_JH159148v1_alt    35620 17 +     88070 GTGTTTTGACAGCAAGT
s panTro5.chr17             16346722 17 +  83181570 GTGTTTTGACAGCAAGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16257292 17 +  83442489 GTGTTTTGACAGCAAGT
i panPan2.chr17             C 0 T 6028
s gorGor5.CYUI01015385v1     4098615 17 +   4267968 GTGTTTTGACAGCAAGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083404 17 -   2193130 GTGTTTTGACAGCAAGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2106180 17 +  10377808 GTGTTTTGACAGCAAGT
i macNem1.NW_012014910v1    T 9959 C 0
s cerAty1.NW_012006043v1     1997486 17 -   8458610 GTGTTTTGACAGCAAGT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946457 17 +  75148670 GTATTTTGACAGCAAGT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192481 17 +   4244037 GTGTTTTGATAGCAAGT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205042 14 +   4569836 ---TTTTGACAGCAAGT
i colAng1.NW_012122154v1    I 3 C 0
s calJac3.chr5              46148361  1 - 159171411 G----------------
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868759 17 +   3513951 GTGTTTTGACAGCAAGT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        4977 17 -   4077172 GTGTTTTGACAGCAAGT
i cebCap1.NW_016107543v1    C 0 C 0
s otoGar3.GL873537          22868454 17 +  28711273 GTGGTTGGACAGCAAGT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22133377 11 - 122082543 GAGGTTTCACA------
i mm10.chr11                C 0 C 0
s canFam3.chr9              21491627 17 +  61074082 GTGGTGTGACAGCACGT
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            499783 17 -    852752 GTGGTCTGACAGCAGAG
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7022679 37 -   7032639 I
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=103154.000000
s hg38.chr17_JH159148v1_alt    35637 11 +     88070 TGGGTGGCAGC
s panTro5.chr17             16346739 11 +  83181570 TGGGCGGCAGC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251281 11 +  83442489 TTGGTGGCAGC
i panPan2.chr17             T 6028 C 0
s gorGor5.CYUI01015385v1     4098632 11 +   4267968 TGGGTGGCAGC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083421 11 -   2193130 TGGGCGGCAGC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2106197 11 +  10377808 TGGGCGGCAGC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997503 11 -   8458610 TGGGTGGCAGC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946474 11 +  75148670 TGGGCGACAGC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192498 11 +   4244037 TGGGCGGCAGC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205056 11 +   4569836 TGGGCGGCAGC
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1868776 11 +   3513951 TGGGCGGCAGC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        4994 11 -   4077172 TGGGCGGCAGC
i cebCap1.NW_016107543v1    C 0 C 0
s otoGar3.GL873537          22868471 11 +  28711273 TGGGCGGCAGC
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22133388  5 - 122082543 ------GCAGC
i mm10.chr11                C 0 C 0
s canFam3.chr9              21491644 11 +  61074082 TGGGAGGCAGC
i canFam3.chr9              C 0 I 3
s dasNov3.JH570468            499800 11 -    852752 TGGGCAGCAGC
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7022679 37 -   7032639 I
e calJac3.chr5              46148362  0 - 159171411 C
e macFas5.chr16             28049576  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=335545.000000
s hg38.chr17_JH159148v1_alt    35648 25 +     88070 AAGGCTGGCAGCAGCTGGACACAC------------A
s panTro5.chr17             16346750 25 +  83181570 AAGGCTGGCAGCAGCTGGACACAC------------A
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251292 24 +  83442489 -AGGCTGGCAGCAGCTGGACACAC------------A
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098643 25 +   4267968 AAGGCTGGCAGCAGCTGGACACAC------------A
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083432 25 -   2193130 AAGGTTGGCAGCAGCTGGACACAC------------A
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28049576 25 -  80997621 AGGGCTGGCAGCAGCTGGACACAC------------A
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106208 25 +  10377808 AAGGCTGGCAACAGCTGGACACAC------------A
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997514 25 -   8458610 AAGGCTGGCAGCAGCTGGACACAC------------A
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946485 25 +  75148670 AAGGCTGGCAGCAGCTGGACACAC------------A
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192509 25 +   4244037 AAGGCTGGCAGCAGCTGGACACAC------------A
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205067 25 +   4569836 AAGGCTGGCAGCAGCTGGACACAC------------A
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148362 25 - 159171411 AGGGCTGGCAGCAGCTGGACACAC------------A
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868787 25 +   3513951 AAGGCTGGCAGCAGCTGGACACAC------------A
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        5005 25 -   4077172 AAGGCTGGCAGCAGCTGGACACAC------------A
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7022716 25 -   7032639 AAGGCTGGCAGCAGCTGGTCACAC------------A
i aotNan1.NW_018502359v1    I 37 C 0
s otoGar3.GL873537          22868482 25 +  28711273 AGGGCTGGAGGCAGCTGTACTCAT------------A
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22133393 37 - 122082543 TGGGCTGGCAGCAGCTGGTTATACATGTTGGCTTATA
i mm10.chr11                C 0 C 0
s canFam3.chr9              21491658 25 +  61074082 AAGGCTCACAGCAGCTGGATCCAC------------A
i canFam3.chr9              I 3 C 0
s dasNov3.JH570468            499811 25 -    852752 AAGGTTGGCAGCAGCTGGACCCAC------------A
i dasNov3.JH570468          C 0 I 22848
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=40043.000000
s hg38.chr17_JH159148v1_alt    35673  5 +     88070 G------------------------CAGG
s panTro5.chr17             16346775  5 +  83181570 G------------------------CAGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251316  5 +  83442489 G------------------------CAGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098668  5 +   4267968 G------------------------CAGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083457  5 -   2193130 G------------------------CAGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28049601  5 -  80997621 G------------------------CAGG
i macFas5.chr16             C 0 I 1
s macNem1.NW_012014910v1     2106233  5 +  10377808 G------------------------CAGG
i macNem1.NW_012014910v1    C 0 I 1
s cerAty1.NW_012006043v1     1997539  5 -   8458610 G------------------------CAGG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946510  5 +  75148670 G------------------------CAGG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192534  5 +   4244037 G------------------------CTGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205092  5 +   4569836 G------------------------CAGG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148387  5 - 159171411 G------------------------CAGG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868812  5 +   3513951 G------------------------CAGG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        5030  5 -   4077172 G------------------------CAGG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7022741 29 -   7032639 GGTGGGCTGGCAGCAGCTGGTCACACAGG
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868507  5 +  28711273 G------------------------CAGC
i otoGar3.GL873537          C 0 I 1
s mm10.chr11                22133430  5 - 122082543 G------------------------CAAG
i mm10.chr11                C 0 I 1
s canFam3.chr9              21491683  3 +  61074082 G------------------------CA--
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            522684  5 -    852752 G------------------------CAAG
i dasNov3.JH570468          I 22848 C 0
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=-1450.000000
s hg38.chr17_JH159148v1_alt    35678 1 +     88070 -A
s panTro5.chr17             16346780 1 +  83181570 -A
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251321 1 +  83442489 -A
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098673 1 +   4267968 -A
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083462 1 -   2193130 -A
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1997544 1 -   8458610 -A
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946515 1 +  75148670 -A
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192539 1 +   4244037 -A
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205097 1 +   4569836 -A
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148392 1 - 159171411 -A
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868817 1 +   3513951 -A
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        5035 1 -   4077172 -A
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7022770 1 -   7032639 -T
i aotNan1.NW_018502359v1    C 0 C 0
s dasNov3.JH570468            522689 1 -    852752 C-
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22133435 1 - 122082543 I
e canFam3.chr9              21491686 0 +  61074082 C
e otoGar3.GL873537          22868512 1 +  28711273 I
e macNem1.NW_012014910v1     2106238 1 +  10377808 I
e macFas5.chr16             28049606 1 -  80997621 I
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=27770.000000
s hg38.chr17_JH159148v1_alt    35679 3 +     88070 -GGG
s panTro5.chr17             16346781 3 +  83181570 -GGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251322 3 +  83442489 -GGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098674 3 +   4267968 -GGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083463 3 -   2193130 -GGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28049607 3 -  80997621 -GGG
i macFas5.chr16             I 1 C 0
s macNem1.NW_012014910v1     2106239 3 +  10377808 -GGG
i macNem1.NW_012014910v1    I 1 C 0
s cerAty1.NW_012006043v1     1997545 3 -   8458610 -GGG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946516 3 +  75148670 -GGG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192540 3 +   4244037 -GGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205098 3 +   4569836 -GGG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148393 3 - 159171411 -GGG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868818 3 +   3513951 -GGG
i saiBol1.JH378271          C 0 I 12582
s cebCap1.NW_016107543v1        5036 3 -   4077172 -GGG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7022771 3 -   7032639 -GGG
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868513 3 +  28711273 -GGG
i otoGar3.GL873537          I 1 C 0
s mm10.chr11                22133436 2 - 122082543 --GG
i mm10.chr11                I 1 I 1
s dasNov3.JH570468            522690 3 -    852752 TGG-
i dasNov3.JH570468          C 0 C 0
e canFam3.chr9              21491686 0 +  61074082 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=255703.000000
s hg38.chr17_JH159148v1_alt    35682 25 +     88070 CTGGCAGCAGGATGTGCT-------------------------------------------------------------------------GCTGCAG
s panTro5.chr17             16346784 25 +  83181570 CTGGCAGCAGGGTGTGCT-------------------------------------------------------------------------GCTGCAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251325 25 +  83442489 CTGGCAGCAGGGTGTGCT-------------------------------------------------------------------------GCGGCAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098677 25 +   4267968 CTGGCAGCAAGGTGTGCT-------------------------------------------------------------------------GCAGCAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083466 25 -   2193130 CTGGCAGCAGGGTGTGCT-------------------------------------------------------------------------GCAGCAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28049610 25 -  80997621 CTGGCAGCAGGGTGTGCT-------------------------------------------------------------------------GCTGCAG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106242 25 +  10377808 CTGGCAGCAGGGTGTGCT-------------------------------------------------------------------------GCTGCAG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997548 25 -   8458610 CTGGCAGCAGGGTGTGCT-------------------------------------------------------------------------GCTGCAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946519 25 +  75148670 CTGGCAGCAGGGTGTGCT-------------------------------------------------------------------------GCTGCAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192543 25 +   4244037 CTGGCAGCAGGGTGTGCT-------------------------------------------------------------------------GCTGCAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205101 25 +   4569836 CTGGCAGCAGGGTGTGCT-------------------------------------------------------------------------GCTGCAG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148396 25 - 159171411 CTGGCAGCAGGGTGTGCT-------------------------------------------------------------------------GCAGCAG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1881403 25 +   3513951 CTGGCAGCAGGGTGTGCT-------------------------------------------------------------------------GCTGCAG
i saiBol1.JH378271          I 12582 C 0
s cebCap1.NW_016107543v1        5039 25 -   4077172 CTGGCAGCAGGGTGTGCT-------------------------------------------------------------------------GCTGCAG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7022774 98 -   7032639 CTGGCAGCAGGGTGTGCTGCAGCAGGAAGGCTGGCAGCAGCTGGTCACACAGGTGGGCTGGCAGCAAAGGTGTGCTGCAGCAGGAAGGCTGGCAGCAG
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868516 25 +  28711273 CTGGCAGCAGGGTGTGCT-------------------------------------------------------------------------GCAACAG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22133439 25 - 122082543 TTCACAGTTGCTGGAATG-------------------------------------------------------------------------GCAGCAG
i mm10.chr11                I 1 C 0
s dasNov3.JH570468            522693 25 -    852752 CTGGCAGCAGGTTGTGTA-------------------------------------------------------------------------GCAGCAA
i dasNov3.JH570468          C 0 I 106
e canFam3.chr9              21491686  0 +  61074082 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=100.000000
s hg38.chr17_JH159148v1_alt    35707 1 +     88070 G
s panTro5.chr17             16346809 1 +  83181570 G
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251350 1 +  83442489 G
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098702 1 +   4267968 G
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083491 1 -   2193130 G
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28049635 1 -  80997621 G
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106267 1 +  10377808 G
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997573 1 -   8458610 G
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946544 1 +  75148670 G
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192568 1 +   4244037 G
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205126 1 +   4569836 G
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148421 1 - 159171411 C
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1881428 1 +   3513951 C
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        5064 1 -   4077172 C
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7022872 1 -   7032639 C
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868541 1 +  28711273 G
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22133464 1 - 122082543 C
i mm10.chr11                C 0 C 0
e canFam3.chr9              21491686 0 +  61074082 C
e dasNov3.JH570468            522718 106 -    852752 I
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=322212.000000
s hg38.chr17_JH159148v1_alt    35708 29 +     88070 TGGTCACAGTGGTGGGCTTCCAGCAGGTT
s panTro5.chr17             16346810 29 +  83181570 TGGTCACAGTGGTGGGCTGCCAGCAGGTG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251351 29 +  83442489 TGGTCACAGTGGTGGGCTGCCAGCAGGTG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098703 29 +   4267968 TGGTCACAGTGGTGGGCTGCCAGCAGGTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083492 20 -   2193130 TGGTCACTGTGGTGGGCTGC---------
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28049636 29 -  80997621 TGGTCACACAGGTGGGCTTCCAGCAGGTG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106268 29 +  10377808 TGGTCACACAGGTGGGCTTCCAGCAGGTG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997574 29 -   8458610 TGGTCACAGTGGTGGGCTTCCAGCAGGTG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946545 29 +  75148670 TGGTCACACAGGTGGGCTTCCAGCAGGTG
i chlSab2.chr16             C 0 T 10378
s manLeu1.NW_012106252v1     2192569 29 +   4244037 TGGTCACACAGGTGGGCTTCCAGCAGGTG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205127 29 +   4569836 TGGTCACACAGGTGGGCTTCCAGCAGGTG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148422 29 - 159171411 TGGTCACACAGGTGGGCTTCCAGCAGGTG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1881429 29 +   3513951 TGGTCACACAGGTGGGCTTCCAGCAGGTG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        5065 29 -   4077172 TGGTCACACAGGTGGGCTTCCAGCAAGTG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7022873 29 -   7032639 TGGTCACACAGGTGGGCTTCCAGCAGGTG
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868542 29 +  28711273 TGGCCTCACAGGTGGGCTGCCAGTAGATG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22133465 29 - 122082543 TGGTTACACATGGTGGCTTATAGCAGGTG
i mm10.chr11                C 0 C 0
s canFam3.chr9              21491686 19 +  61074082 ----------GCTGGGCTCGCAGAAGGTG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            522824 29 -    852752 TGGTCACACAGGTTGGCTGGCAGCAGGTG
i dasNov3.JH570468          I 106 C 0
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=613966.000000
s hg38.chr17_JH159148v1_alt    35737  49 +     88070 GTCCTGCAGCAGGTGGTC---------------------------------------------------------CTGCAGCATGTAGGCTGACAGCAAGGGGAAC
s panTro5.chr17             16346839  49 +  83181570 GTCCTGCAGCAGGTGGTC---------------------------------------------------------CTGCAGCACGTAGGCTGACAGCAAGGGGAGC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251380  49 +  83442489 GTCCTGCAGCAGGTGGTC---------------------------------------------------------CTGCAGCACGTAGGCTGACAGCAAGGGGAGC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098732  49 +   4267968 GTCCTGCAGCAGGTTGTC---------------------------------------------------------CTGCAGCAGGTAGGCTGATAGCAAGGGGAGC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083512  43 -   2193130 ------CAGCAGGTGGTC---------------------------------------------------------CTGCAGCATGTAGGCTTACAGCAAGGGGAGC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28049665  49 -  80997621 GTCCTGCAGCAGGTGGTC---------------------------------------------------------CTGCAGCACGTAGGCTGACAGCAAGGGGAGC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106297  49 +  10377808 GTTCTGCAGCAGGTGGTC---------------------------------------------------------CTGCAGCACGTAGGCTGGCAGCAAGGGGAGC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997603  49 -   8458610 GTCCTGTGACAGGTGGTC---------------------------------------------------------CTGCAGCACGTAGGCTGACAGCAAGAGGAGC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936196  49 +  75148670 GTCCTGCAGCAGGTGGTC---------------------------------------------------------CTGCAGCACGTAGGCTGGCAGCAAGGGGAGC
i chlSab2.chr16             T 10378 C 0
s manLeu1.NW_012106252v1     2192598  49 +   4244037 GTCCTGCAGCAGGTGGTC---------------------------------------------------------CTGCAGCACGTAGGCTGACAGCAAGGGGAGC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205156  49 +   4569836 GTCCTGCAGCAGGTGGTC---------------------------------------------------------CTGCAGCACGTAGGCTGGCAGCAAGGGGAGC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148451  49 - 159171411 GTCCTGCAGCAGGTGGTC---------------------------------------------------------CGGCAGCACGTAGGCTGGCAGCAAGGGGAGC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1881458  49 +   3513951 GTCCTGCAGCAGGTGGTC---------------------------------------------------------CTGCAGCACGTAGGCTGGCAGCAAGGGGAGC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        5094  49 -   4077172 GTCCTGCAGCAGGTGGTC---------------------------------------------------------CTGCAGCACGTAGGCTGGCAGCAAGGGGAGC
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7022902  49 -   7032639 GTCCTGCAGCAGGTGGTC---------------------------------------------------------CTACAGCACGTAGGCTGGCAGCAAGGGGAGC
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868571  94 +  28711273 GTCCTGCAGCAGGTGGTTAGACAGCAAGCTGGGTGGCA------------GCAGCTGGGCTGGCAGCAGGGCGTGCTGCAGCAGGTGGACTGGCAGCAAGGGGAGC
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22133494  49 - 122082543 GTCCTACAGCAGGTGGTT---------------------------------------------------------TCACAGCAGCTGGGCTGACAACAGGGTGGGC
i mm10.chr11                C 0 I 12644
s canFam3.chr9              21491705  49 +  61074082 GTCCTGCAGCACGTGGTC---------------------------------------------------------CTGCAGCACGTGGGCTGGCAGCATGGGGAGC
i canFam3.chr9              C 0 I 3
s dasNov3.JH570468            522853 106 -    852752 GTCCTACAGCAGGTGGTCTGACAGCAGAGTGGGTGGCAGCAAGGCTGGCCGCAGCTGGACCCACAAGAACTGGACCCACAGCAGGTGGGCTGGCAGCAGGGAGAGC
i dasNov3.JH570468          C 0 C 0
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=246780.000000
s hg38.chr17_JH159148v1_alt    35786 23 +     88070 AGCAGT-GGGTCATGGTGTCAGGG
s panTro5.chr17             16346888 23 +  83181570 AGCAGT-GGGTCATGGTGTCAGGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251429 23 +  83442489 AACAGT-GGGTCATGGTGTCAGGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098781 23 +   4267968 AACAGT-GGGTCATGGTGTCAGGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083555 23 -   2193130 AGCAGT-GGGTCATTGTGTCACGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28049714 23 -  80997621 AACAGT-TGGTCATGGTGTCAGGG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106346 23 +  10377808 AACAGT-TGGTCATGGTGTCAGGG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997652 23 -   8458610 AGCAGT-GGGTCATGGTGTCAGGG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936245 23 +  75148670 AACAGT-TGGTCATGGTGTCAGGG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192647 23 +   4244037 AACAGT-TGGTCATGGTGTCAGGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205205 23 +   4569836 AACAGT-TGGTCATGGTGTCAGGC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148500 24 - 159171411 AGCAGTGGGGTCATGATGTCAGAA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1881507 23 +   3513951 AGCAGT-AAGTCATAGTGTCAGGG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        5143 23 -   4077172 AGCAGT-GGGTCATGGTGTCAGGG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7022951 23 -   7032639 AGCAGT-CAGTCATGGTGTCAGAG
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22868665 23 +  28711273 AGCAGT-GGGTCATGGCGTCCTGT
i otoGar3.GL873537          C 0 T 7897
s mm10.chr11                22146187 23 - 122082543 AGGTGT-GGGTCATGGTGTCAGGA
i mm10.chr11                I 12644 C 0
s canFam3.chr9              21491757 23 +  61074082 ACGATT-CACTCATGGTGTCGCCG
i canFam3.chr9              I 3 C 0
s dasNov3.JH570468            522959 22 -    852752 AGCAGG-AAGTCATGGTGTCAGG-
i dasNov3.JH570468          C 0 C 0
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=753658.000000
s hg38.chr17_JH159148v1_alt    35809 64 +     88070 GTGGAGG-GTGGGTTTCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGATGACCCCTTGCAATCTGGA
s panTro5.chr17             16346911 64 +  83181570 GTGGAGG-GTGGGTTTCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGATGACTCCTTGCAATCTGGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251452 64 +  83442489 GTGGAGG-GTGGGTTTCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGATGACTCCTTGCAATCTGGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098804 64 +   4267968 GTGGAGG-GTGGGTTTCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGATGACCCCTTGCAATCTGGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083578 64 -   2193130 GTGAAGG-GTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGATGACCCCTTGCAATCTGGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28049737 64 -  80997621 GTGGAGG-GTGGGTTTCTGTTCAGAGGTGAGTTTCCCAGAAT----GTGATGACCCCTTGCAATCTGGA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106369 64 +  10377808 GTGGAAG-GTGGGTTTCTGTTCAGAGGTGAGTTTCCCAGAAT----GTGATGACCCCTTGCAATCTGGA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997675 64 -   8458610 GTGGAAG-GTGAGTTTCTGTTCAGAGGTGAGTTTCCAAGAAT----TTGATGACCCCTTGCAGTCTGGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936268 64 +  75148670 GTGGAGG-GTGGGTTTCTGATCAGAGGTGAGTTTCCCAGAAT----GTGATGACCCCTTGCAATTGGGA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192670 64 +   4244037 ATGGAGG-GTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGAAT----GTGATGACCCCTTGCAATCTGGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205228 64 +   4569836 GTGAAGG-GTGGGCTTCTGTTCAGAGGTGAATTTCCCAGAAT----CTGATGACCCCTTGCAATCTAGA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148524 64 - 159171411 GTGGAGG-GTGGGCTCCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGGTGACTCCTTCCAATCTGGG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1881530 64 +   3513951 GTGGAGG-GTGAGTTCCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGGTGACTCCCTCCAATCTGGG
i saiBol1.JH378271          C 0 T 18209
s cebCap1.NW_016107543v1        5166 64 -   4077172 GTGGAGG-GTGGGCTCCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGGTGACTCCTTCCAATCTGGG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7022974 64 -   7032639 GTGGAGG-GTGGGCTACTGTTCAGAGGTGAGTTTCCCAGAAT----CTGGTGACTCCCTCCAATCTGGG
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22860791 64 +  28711273 GTGGAGG-GTGGGTTCCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGCTGATGCCTTCCAATGTGGA
i otoGar3.GL873537          T 7897 C 0
s mm10.chr11                22146210 64 - 122082543 GAGGAGG-GTGATAGTCTATTCCCAGGTGAGTTTTACACAAT----GTAGCAAGTTCTTCCAGTCAGGG
i mm10.chr11                C 0 C 0
s canFam3.chr9              21491780 69 +  61074082 GGGGAGGCGTGGGCTTCTGTTCTGAGGTGACGTTCTCAGATTCTGACTGATGCCTCCTTCCATTCTGGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            522981 59 -    852752 ATGGAGG---GGGCTCGTGTTCAGAGGTG---TTTGCAGAAT----CTGATGGCTCCTTTAATTCTGTG
i dasNov3.JH570468          C 0 C 0
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=923033.000000
s hg38.chr17_JH159148v1_alt    35873 80 +     88070 CCTTTTATACACCTGGC--------CTCCAAAGTTTCCACCAAACAGCAGGACTTTTCCTTGTTGCTGTTTACA-TTGTTTTCCACAGT
s panTro5.chr17             16346975 80 +  83181570 CCTTTTATGCACCTGGC--------CTCCAAAGTTTCCTCCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACA-TTGTTTTCCACAGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251516 80 +  83442489 CCTTTTATACACCTGGC--------CTCCAAAGTTTCCTCCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACA-TTGTTTTCCACAGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098868 80 +   4267968 CCTTTTATACACCTGGC--------CTCCAAAGTTTCCGCCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACA-TTGTTTTCCACAGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083642 80 -   2193130 CCTTTTATACACCTGGC--------CTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACG-TTGTTTCCCACAGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28049801 80 -  80997621 CCTTTTATACACCTGGC--------CTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACA-TTGTTTTCTATAGT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106433 80 +  10377808 CCTTTTATACACCTGGC--------CTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACA-TTGTTTTCTATAGT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997739 81 -   8458610 CCTTTTGTAAACCTGGC--------CTCCAAAGTGTCCACCAATCTGCAGGGTTTTTCTTTGTTGCTGTTTACACTTGTTTTCTATAGT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936332 80 +  75148670 CCTTTTATACACCTGGC--------CTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACA-TTGTTTTCTATAGT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2192734 80 +   4244037 CCTTTTATACACCTGGC--------CTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGCTGCTGTTTACA-TTGTTTTCCACAGT
i manLeu1.NW_012106252v1    C 0 T 10406
s colAng1.NW_012122154v1     2205292 81 +   4569836 CCTTTTATACACCTGGC--------CTCCAAAGTTTCCACCAATCTGCAGGATTTTTCTTTGTTGCTGTTTACAATTGTTTTCCATAGT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148588 80 - 159171411 CCTTTTATACATGTGGC--------CTTCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACA-TTGTTTTCCACAGT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1863385 80 +   3513951 CCTTTTATACATCGGGC--------CTCCAACGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACA-TTGTTTTCCACAGT
i saiBol1.JH378271          T 18209 C 0
s cebCap1.NW_016107543v1        5230 80 -   4077172 CCTTTTATACACGTGGC--------CTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACA-TTGTTTTCCACAGT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7023038 80 -   7032639 CCTTTTATACATGTGGC--------CTCCAATGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACA-TTGTTTCTCACAGT
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22860855 80 +  28711273 CCTTTTATACACTGGGC--------CTCCAAAGTTTGGACCAATGGGCAGAAGTTTTCCTTGTTGTTGTTGACA-CTGTTTTCCATAAT
i otoGar3.GL873537          C 0 I 2
s mm10.chr11                22146274 75 - 122082543 CCTTTTATACAACAGGC--------CTCCAAGGTTTGGACCAATCAGAAGGAGGTTTCTTTCTTGTT-----TA-TTATTTTCCATATT
i mm10.chr11                C 0 C 0
s canFam3.chr9              21491849 81 +  61074082 GCTTTTATACACTGGACCCCCTCAACCCCAACGTATGGACCAATGGGCAGGACTTCCCT-------TGTTTATA-CCGTTTTCCATAGT
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            523040 75 -    852752 TCTTTTATACTCTGGGC--------C-CCAATATTT-AACTAATCAGCTGATCTTTCCCCTATTATTG---ACA-TTGTTTACCATGGA
i dasNov3.JH570468          C 0 C 0
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=397748.000000
s hg38.chr17_JH159148v1_alt    35953 52 +     88070 CATTGTGGT---ATTGTCAAAGGGGACGTTGTTTCCTAAA-GGTTATGAATCTTTT
s panTro5.chr17             16347055 52 +  83181570 CATTGTGGT---ATTGTCAAAGGGGACGTTGTTTCCTAAA-GGTTATGAATCTTTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251596 52 +  83442489 CATTGTGGT---ATTGTCAAAGGGGACGTTGTTTCCTAAA-GGTTATGAATCTTTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4098948 52 +   4267968 CACTGTGGT---ATTGTCAAAGGGGACGTTGTTTCCTAAA-GGTTATGAATCTTTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083722 52 -   2193130 CATTTTGGT---ATTGTCAAAGGGGAAGTTGTTTCCTAAA-GATTATGAATCTTTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28049881 52 -  80997621 CAGTCTGGG---ACTGTCAAAGGGGAAGTTGTTTCCTAAA-GATTATGAATCTTTT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106513 52 +  10377808 CAGTCTGGG---ACTGTCAAAGGGGAAGTTGTTTCCTAAA-GATTATGAATCTTTT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997820 52 -   8458610 CAGTTTGGC---ATTGTCAAAGAGGAAGTCATTTCCCAAA-TGTTATGAATCTTTG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936412 52 +  75148670 CAGTTTGGG---ACTGTCAAAGGGGAAGTTGTTTCCTAAA-GATTATGAATCTTTT
i chlSab2.chr16             C 0 I 20009
s colAng1.NW_012122154v1     2205373 52 +   4569836 CAGTTTGGC---ATTGTCAAAGAGGAAGTCATTTCCTAAA-TGTTATGAATCTTTG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148668 52 - 159171411 CCGATTGGG---ATTGTCAAAGGGGAAGTTGTTTTTGAAA-TCTTATGAATCTTTT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1863465 52 +   3513951 CCGTTTGGG---ATTGTCAAAGGGGAAGTTGTTTCTGAAA-TCTTATGAATCTTTT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        5310 52 -   4077172 CCGTTTGGG---ATTGTCAAAGGGGAAGTTGTTTTTAAAA-TCTTATGAATCTTTT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7023118 52 -   7032639 CTATTTGGG---ATTGTCAAAGGGGAAGTTGTTTTTGAAA-TCTTATGAATCTTTT
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22860937 51 +  28711273 CTAGCTGA----ATTATGAAGGAGGAAGTTGTTTCCTAAG-GGTTAAAACTCTTCC
i otoGar3.GL873537          I 2 C 0
s mm10.chr11                22146349 51 - 122082543 TAATTTGTG---TTCATCAAGGAAGAATTCCTTACCCAA--TGCTCTGAATCATTT
i mm10.chr11                C 0 C 0
s canFam3.chr9              21491930 49 +  61074082 CACTGGCGG---CTGGTAGAAGAGGAAG---TTCCCTAAG-TGTTAGGAATCCCTA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            523115 54 -    852752 --TAGTGGGCAAACTATCAAGAAGGATGTTTTCCCCCAAAGTGTTATGACTCTTCT
i dasNov3.JH570468          C 0 C 0
e manLeu1.NW_012106252v1     2192814 10406 +   4244037 T
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=63120.000000
s hg38.chr17_JH159148v1_alt    36005 6 +     88070 GAAAGT
s panTro5.chr17             16347107 6 +  83181570 GAAAGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251648 6 +  83442489 GAAAGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099000 6 +   4267968 GAAAGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083774 6 -   2193130 GAAAGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28049933 6 -  80997621 GAAAGT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106565 6 +  10377808 GAAAGT
i macNem1.NW_012014910v1    C 0 I 17
s cerAty1.NW_012006043v1     1997872 6 -   8458610 GAAAGT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64956473 6 +  75148670 GAAAGT
i chlSab2.chr16             I 20009 C 0
s colAng1.NW_012122154v1     2205425 6 +   4569836 GAAAGT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148720 6 - 159171411 GAAAGT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1863517 6 +   3513951 GAAGGT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        5362 6 -   4077172 GAAGGT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7023170 6 -   7032639 GAAAGT
i aotNan1.NW_018502359v1    C 0 I 10
s otoGar3.GL873537          22860988 6 +  28711273 AATAGT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22146400 6 - 122082543 GCAAGC
i mm10.chr11                C 0 C 0
s canFam3.chr9              21491979 6 +  61074082 GAGAAT
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            523169 6 -    852752 CAAAGT
i dasNov3.JH570468          C 0 C 0
e manLeu1.NW_012106252v1     2192814 10406 +   4244037 T
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=13567.000000
s hg38.chr17_JH159148v1_alt    36011 2 +     88070 AA
s panTro5.chr17             16347113 2 +  83181570 AA
i panTro5.chr17             C 0 I 8
s panPan2.chr17             16251654 2 +  83442489 AA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099006 2 +   4267968 AA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083780 2 -   2193130 AA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1997878 2 -   8458610 AA
i cerAty1.NW_012006043v1    C 0 I 8
s chlSab2.chr16             64956479 2 +  75148670 AA
i chlSab2.chr16             C 0 I 5266
s colAng1.NW_012122154v1     2205431 2 +   4569836 AA
i colAng1.NW_012122154v1    C 0 I 8
s calJac3.chr5              46148726 2 - 159171411 AA
i calJac3.chr5              C 0 I 8
s saiBol1.JH378271           1863523 2 +   3513951 AA
i saiBol1.JH378271          C 0 I 3
s cebCap1.NW_016107543v1        5368 2 -   4077172 AA
i cebCap1.NW_016107543v1    C 0 I 8
s otoGar3.GL873537          22860994 2 +  28711273 AA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22146406 1 - 122082543 -A
i mm10.chr11                C 0 C 0
s canFam3.chr9              21491985 1 +  61074082 -A
i canFam3.chr9              C 0 C 0
e aotNan1.NW_018502359v1     7023176 10 -   7032639 I
e manLeu1.NW_012106252v1     2192814 10406 +   4244037 T
e dasNov3.JH570468            523175 0 -    852752 C
e macNem1.NW_012014910v1     2106571 17 +  10377808 I
e macFas5.chr16             28049939 0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=-3987.000000
s hg38.chr17_JH159148v1_alt    36013 17 +     88070 TTTTCAGAAGAAAATTA
s panPan2.chr17             16251656  2 +  83442489 GG---------------
i panPan2.chr17             C 0 C 0
s mm10.chr11                22146407  4 - 122082543 --TTCA-----------
i mm10.chr11                C 0 C 0
s dasNov3.JH570468            523175  5 -    852752 ------------AAGTG
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7023176 10 -   7032639 I
e cebCap1.NW_016107543v1        5370  8 -   4077172 I
e canFam3.chr9              21491986  0 +  61074082 C
e manLeu1.NW_012106252v1     2192814 10406 +   4244037 T
e otoGar3.GL873537          22860996  0 +  28711273 C
e saiBol1.JH378271           1863525  3 +   3513951 I
e calJac3.chr5              46148728  8 - 159171411 I
e colAng1.NW_012122154v1     2205433  8 +   4569836 I
e chlSab2.chr16             64956481 5266 +  75148670 I
e cerAty1.NW_012006043v1     1997880  8 -   8458610 I
e macNem1.NW_012014910v1     2106571 17 +  10377808 I
e macFas5.chr16             28049939  0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I
e nomLeu3.chrUn_GL397460_1   2083782  0 -   2193130 C
e gorGor5.CYUI01015385v1     4099008  0 +   4267968 C
e panTro5.chr17             16347115  8 +  83181570 I

a score=2298.000000
s hg38.chr17_JH159148v1_alt    36030 6 +     88070 TTTAAT
s saiBol1.JH378271           1863528 6 +   3513951 TTTAAT
i saiBol1.JH378271          I 3 I 5809
s mm10.chr11                22146411 5 - 122082543 -TTACT
i mm10.chr11                C 0 C 0
s dasNov3.JH570468            523180 6 -    852752 TTTAAT
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7023176 10 -   7032639 I
e cebCap1.NW_016107543v1        5370 8 -   4077172 I
e canFam3.chr9              21491986 0 +  61074082 C
e manLeu1.NW_012106252v1     2192814 10406 +   4244037 T
e otoGar3.GL873537          22860996 0 +  28711273 C
e calJac3.chr5              46148728 8 - 159171411 I
e colAng1.NW_012122154v1     2205433 8 +   4569836 I
e chlSab2.chr16             64956481 5266 +  75148670 I
e cerAty1.NW_012006043v1     1997880 8 -   8458610 I
e macNem1.NW_012014910v1     2106571 17 +  10377808 I
e macFas5.chr16             28049939 0 -  80997621 C
e rheMac8.chr16             30135516 2040 -  77216781 I
e nomLeu3.chrUn_GL397460_1   2083782 0 -   2193130 C
e gorGor5.CYUI01015385v1     4099008 0 +   4267968 C
e panPan2.chr17             16251658 0 +  83442489 C
e panTro5.chr17             16347115 8 +  83181570 I

a score=-17715.000000
s hg38.chr17_JH159148v1_alt    36036 35 +     88070 TTTCTGTTGCTTAATTTCTTAGTTTTCTGTTATTT
s panPan2.chr17             16251658  7 +  83442489 --------GTTTAAT--------------------
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099008  9 +   4267968 ------GGGTTTAAT--------------------
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083782  8 -   2193130 ------AGGTTTAA---------------------
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28049939 11 -  80997621 ----AAGGGTTTAAT--------------------
i macFas5.chr16             C 0 I 1
s otoGar3.GL873537          22860996  8 +  28711273 ------GTGTTTAA---------------------
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22146416 13 - 122082543 TATCTGGTGATAA----------------------
i mm10.chr11                C 0 C 0
s canFam3.chr9              21491986 10 +  61074082 -----GGTGCTTAAC--------------------
i canFam3.chr9              C 0 I 5
s dasNov3.JH570468            523186  6 -    852752 -------CATTCC----------------------
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018502359v1     7023176 10 -   7032639 I
e cebCap1.NW_016107543v1        5370  8 -   4077172 I
e manLeu1.NW_012106252v1     2192814 10406 +   4244037 T
e saiBol1.JH378271           1863534 5809 +   3513951 I
e calJac3.chr5              46148728  8 - 159171411 I
e colAng1.NW_012122154v1     2205433  8 +   4569836 I
e chlSab2.chr16             64956481 5266 +  75148670 I
e cerAty1.NW_012006043v1     1997880  8 -   8458610 I
e macNem1.NW_012014910v1     2106571 17 +  10377808 I
e rheMac8.chr16             30135516 2040 -  77216781 I
e panTro5.chr17             16347115  8 +  83181570 I

a score=46788.000000
s hg38.chr17_JH159148v1_alt    36071 7 +     88070 TCTGTTG
s panTro5.chr17             16347123 7 +  83181570 TCTGTTG
i panTro5.chr17             I 8 C 0
s panPan2.chr17             16251665 6 +  83442489 -CTGTTG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099017 6 +   4267968 -CTGTTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083790 7 -   2193130 TCTGTTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28049951 5 -  80997621 --TGTCT
i macFas5.chr16             I 1 C 0
s cerAty1.NW_012006043v1     1997888 7 -   8458610 TCTGTTT
i cerAty1.NW_012006043v1    I 8 C 0
s chlSab2.chr16             64961747 7 +  75148670 TCTGTTT
i chlSab2.chr16             I 5266 C 0
s manLeu1.NW_012106252v1     2182408 7 +   4244037 TCTGTTT
i manLeu1.NW_012106252v1    T 10406 C 0
s colAng1.NW_012122154v1     2205441 7 +   4569836 TCTGTTT
i colAng1.NW_012122154v1    I 8 C 0
s calJac3.chr5              46148736 7 - 159171411 TCTGTTT
i calJac3.chr5              I 8 C 0
s saiBol1.JH378271           1869343 7 +   3513951 TCTGTTT
i saiBol1.JH378271          I 5809 C 0
s cebCap1.NW_016107543v1        5378 7 -   4077172 TCTGTTT
i cebCap1.NW_016107543v1    I 8 C 0
s aotNan1.NW_018502359v1     7023186 7 -   7032639 TCTGGTT
i aotNan1.NW_018502359v1    I 10 C 0
s otoGar3.GL873537          22861004 7 +  28711273 TCTGTTT
i otoGar3.GL873537          C 0 C 0
e mm10.chr11                22146429 0 - 122082543 C
e canFam3.chr9              21491996 5 +  61074082 I
e dasNov3.JH570468            523192 0 -    852752 C
e macNem1.NW_012014910v1     2106571 17 +  10377808 I
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=2161043.000000
s hg38.chr17_JH159148v1_alt    36078 270 +     88070 CTTAATTGTAGTTTACTCATAGAAAG-TTTATTTTCGATAAA--AGGAAGCCCCTCTCAAC-ATCTGCATCGTTCCTGATGTGACCATCTTCTGATTATGTGAT--AGTTCCTG----GTGACCG--GTTAGGCTCAGGA--AGTTCTCTCTACCCAGCCTC-CTTCTTTGGTTGTATGTAG---ATTGGGAA-----GTGTCTGTTGCG----GG-----AAGCGTGA-------TGCTGATGTGTTCACAATGACTAAATGAATTCATATCTGTGGCCTAGATTGTTCAGCCACCAAAGTCTGATTC
s panTro5.chr17             16347130 270 +  83181570 CTTAATTGTAGTTTACTCATAGAAAG-TTTGTTTTCGATAAA--AGGAAGCCCCTCTCAAC-ATCTGCATCGTTCCTGATGTGACCATCTTCTTATTATGTGAT--AGTTCCTG----GTGACCG--GTTAGGCTCAGGA--AGTTCTCTCTACCCAGCCTC-CTTCTTTGGTTGTATGTAG---ATTGGGAA-----GTGTCTGTGGGG----GG-----AAGCGTGA-------TGCTGATGTGTTCACAATGACTAAATGAATTCATATCTGTGGCCTAGATTGTTCAGCCACCAAAGTCTGATTC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251671 270 +  83442489 CTTAATTGTAGTTTACTCATAGAAAG-TTTGTTTTCGATAAA--AGGAAGCCCCTCTCAAC-ATCTGCATCGTTCCTGATGTGACCATCTTCTTATTATGTGAT--AGTTCCTG----GTGACCG--GTTAGGCTCAGGA--AGTTCTCTCTACCCAGCCTC-CTTCTTTGGTTGTATGTAG---ATTGGGAA-----GTGTCTGTGGGG----GG-----AAGCGTGA-------TGCTGATGTGTTCACAATGACTAAATGAATTCATATCTGTGGCCTAGATTGTTCAGCCACCAAAGTCTGATTC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099023 271 +   4267968 CTTAATTGTAGTTTACTCATAGAAAG-TTTGTTTTCGATAAA--AGGAAGCCCATCTCAACAATCTGCATCGTTCCTGATGTGACCATCTTCTGATTATGTGAT--AGTTCCTG----GTGACCG--GTTAGGCTCAGGA--AGTTCTCTCTACCCAGCCTC-CTTCTTTGGTTGTATGTAG---ATTGGGAA-----GTGTCTGTGGGG----GG-----AAGCGTGA-------TGCTGATGTGTTTACAATGACTAAATGAATTCGTATCTGTGGCCTAGATCGTTCAGCCACCAAAGTCTGATTC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2083797 269 -   2193130 CTTAATTGTAGTTTACTCATAGAAA--TTTGTTTTCGATAAA--AGGAAGCCCATCTCATC-ATCTGCATCTTTCCTGATGTGACCATCTTCTGATTATGTGAT--AGTTCCTG----GTGACCG--GTTAGGCTCAGGA--AGTTCTCTCTACCCAGCCGC-CTTCTTTGGTTGTGTGTAG---ATTGGGAA-----GTGTCTGTGGGG----GG-----CAGCGTGA-------TGCTGATGTGTTCACAATGACTAAATGAATTCATGTCTGTGGCCTAGACTGTTCAGCCACCAAAGTCTGATTC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28049956 269 -  80997621 CTTAATTGTG-TTTACTCATAGAAAC-TTTGTTTCAGATAAA--AGGAAGCCTGTCTCATC-ATCAGCATCGTTTCTGCTCTGACCATCTTCTCATTATGTGTT--TGTTCCTG----GTGACTG--GGGAGGTTCAGGA--AGTTCTCTCTACCCAGCCTC-TTTCTTTGGCTATACCTAG---GTTGGTAA-----GTGTCTGTGGGG----AG-----AAGCGCAA-------CGCTGATATGTTCACAATGACACAATGAATCCATACCTGTGCTCAAGACTGTTCAGCCACCAAAATCTGATTC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106588 269 +  10377808 CTTAATTGTG-TTTACTCATAGAAAC-TTTGTTTCAGATAAA--AGGAAGCCTGTCTCATC-ATCAGCATCGTTTCTGCTCTGACCATCTTCTCATTATGTGTT--TGTTCCTG----GTGACTG--GGGAGGTTCAGGA--AGTTCTCTCTACCCAGCCTC-TTTCTTTGGCTATACCTAG---GTTGGTAA-----GTGTCTGTGGGG----AG-----AAGCGCAA-------TGCTGATATGTTCACAATGACAAAATGAATCCATACCTGTGCTCAAGACTGTTCAGCCACCAAAATCTGATTC
i macNem1.NW_012014910v1    I 17 C 0
s cerAty1.NW_012006043v1     1997895 270 -   8458610 CTTAATTGTGAATTACTCATAGAAAC-TTTGTTTCAGATAAA--AGGAAGGCAGTCTCATC-ATCGGCTTGGTTCCTGCTCTGACCATCATCTGGTCATGTGAT--AGTTCCTG----GTGACTG--GGGAGGCTCAGGA--AGTTCTCTCTGCCCAGTCTC-ATCCTTTGGCTCTATGTAG---ACTGGGAA-----GTGTCTGTGGGG----AG-----AAGCATGA-------TGTTGATATATTCACAGTGGTGAATTGAATCCATGCTTGGGACCAAGACTGTTCACCCACCAAAGCTTGATTC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64961754 269 +  75148670 CTTAATTGTGAATTACTCATAGAAAC-TTTGTTTCAGATGAA--AGGAAGCCCATCTCATC-ATCAGCATCATTCCTGCTCTGACAGTCCTCTGGTGATGTGAT--AGTTCCTG----GTGATCC--CGGAGGCTCAGGA--AGTTCCGTCTTCCCCGCCTC-AT-GGTTGTCTGTATGTGG---CCTGGGAA-----GTGTCTGTGGGG----AG-----AAGCATGA-------TGCTGATCTACTTACTGTAACAAAGGGAATCCATGCCTGGGCCCAAGACTACTCACCCAACAAATTCTGACTC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2182415 270 +   4244037 CTTAATTGTGAATTACTCATAGAAAC-TTTGTTTCAGATAAA--AGGAAGGCAGTCTCATC-ATCGGCTTGGTTCCTGCTCTGACCATCATCTGGTCATGTGAT--AGTTCCTG----GTGACTG--GGGAGGCTCAGGA--AGTTCTCTCTGCCCAGTCTC-ATCCTTTGGCTCTATGTAG---ACTGGGAA-----GTGTCTGTGGGG----AG-----AAGCATGA-------TGTTGATATATTCACAGTGGTGAATTGAATCCATGCTTGGGACCAAGACTGTTCACCCACCAAAGCTTGATTC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205448 269 +   4569836 CTTAATTGTGAATTACTCATAGAAAC-TTTGTTTCAGATAAA--AGGAAGGCAGTCTCATC-ATCAGCTTGGTTCCTGCTCTGACCATCATCTGGTCGTGTGAT--AGTTCCTG----GTGACTG--GGGAGGCTCAGGA--AGTTCTCTCTGCCCAGTCTC-ATCCTTTGGCTGTATGTAG---ACTGGGAA-----GTGTCTGT-GGG----AG-----GAGCATGA-------TGTTGATATATTCACAGTGGTGAATTGAATCCATGCTTGGGACCAAGACTGTTCACCCACCAAAGTTTGATTC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46148743 267 - 159171411 CTTAATTGTGAATTACTCACAGAAACTTTTGTTTCAGATAAA--AGGAAGCCCGTGTCATC-ATTAGCATGGTTCCTGCTCTGACCATCTTCTGGTCATGTGAT--AGTTCCTG----GTGACTG--GGAAGGCTC---A--AGTTCTCTCTA-GCAACCTC-CTTCTTTGGCTGTATGTAG---ATTGGGAA-----GTGTCTGCGGGG----AA-----AAGTGTGA-------CGCTCATATATTTATAGTGACCAAAGGAACCCATGTCTGTGCCCAAAACTGCTCAGCTACCAAAATCTGATTC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1869350 266 +   3513951 CTTAATTGTTAATTACTCACAGAAAC-TTCGTTTCAGATAAA--AGGAAGCCCCTGTCATC-ATTAGCATGGTTCCTGCTCTGACCATCTTCTGGTCATGTGAT--AGTTCCTG----GTTACTG--GGGACGCTC---A--AGTTCTGTCTA-CCAACCTC-CTTCTTTGGCTGTATGTAG---ATTGGAAA-----GTGTCTGCAGGG----AA-----AAGTGTGA-------TGCACATATTTTTACAGTGACCAAAGGAACCCACGTCTGTGCCCAAAACTGCTCAGCCACCAAAGTCTGAATC
i saiBol1.JH378271          C 0 I 460
s cebCap1.NW_016107543v1        5385 266 -   4077172 CTTAATTGTGAATTACTCACAGAAAC-TTTGTTTCAGATAAA--AGGAAGCCCATGTCATC-ACTAGCATGGTTCCTGCTCTGACCATCTTCTGGTCATGTGAT--AGTTCCTG----GTGACTG--GGGAGGCTC---A--AGTTCTCTCTA-CCAACCTC-CTTCCTTGGCTGTATGTAG---ATTGGGAA-----GTGTCTGTGGGG----AA-----AAGTGTGA-------TGCTCATATTTTTACAGTGACCAAAGGAAGCCATGTCTGTGCCCAAAACTGCTCAGCTACCAAAGTCTGATTC
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7023193 265 -   7032639 CTTAATTGTGAATTACTCACAGAAAC-TCTGTTTCAGATGAA--AGGAAGCCCGTGTCATC-ATTAGCATGGTTCCTGCTCTGACCATCTTCTGGTCATGTGAT---GTTCCTG----GTGACTG--GGGAAGCTC---A--AGTTCTCTCTA-CCAACCTC-TTTCTTTGGCTGTATGTAG---ATTGGGAA-----ATGTCTGCGGGG----AA-----AAGTATGA-------TGTTCATATTTTTATAATGATCAAAAGAACCCATGTCTGTGCCAAAAACTGCTCAGCCACCAAAGTCTGATAC
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22861011 272 +  28711273 CTTAATTGAGAATAACTCATCGAAAC-TTC-TTTTAGATAAA--AGAAAG----------C-ATT------GTGCCTGCTCTGGTCACCATCTGATCACATGAC--AGTTCCTG----CTGGCCT--GGGAGGGTCAAGA--GATTCACCCTGCTCA-CCTT-TTCCTGTGACCGTACGCAGTCAATTAGAAAAAAACGTGATTATAATG----AAATAATAAACATGGAAGTGTCTGCTGGTATGTTTACAGTGATGAACTGAATCCATGCCTGGGTCCAAGTCTGTTCACCCACAAAAGCCCGGCTC
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22146429 254 - 122082543 CTTACTTGAAG---ACTTACTTGAAG-TT--TTTCCAACAAATCAGGGATTCATCC----C-ACCAGTTTTGTTATAACTCTGATGGTCATCTGGGCCTTCGTT--AGCTCCTG----ACTGTAT--GGCAATATCAAGATTACTGTATTCTTGCAACCTTC-TCCCCATATCCCTACTTAG---AAGTATAA-----ATGTCTCTGCAT----AT-----GAGTGTGG-------TG------TATTCACAATCATG----GACTCCACACCTATTTCCCTGTCTTTTTGCCCG-CAATGTCCAATTC
i mm10.chr11                C 0 C 0
s canFam3.chr9              21492001 270 +  61074082 -TTAATTGAGAGTAACTCATAGGAAC-ATTG--TCAGAGGGA--AGCAAGATGGTCACATT-AGCAGCCTCGCTCTTGCTTCCGGGGCCATGGGATCACGTGATGCAGTTCCTGGGAAGTGGTTG--GTGAGTC-----A--GTTTCGTGCTCCTTGCCCAG-TTAGTTTGGTTGCATGCAG---ACTAGGA------GTATCCCTGAGGTGAAGG-----GAGCTTGA-------TGGTGATATGTTCATAGTGATGAATTGCAATCATGCTGGAGCCCGAGTCTGTTTCCCCA-AAGTGCCTCATTC
i canFam3.chr9              I 5 I 2
s dasNov3.JH570468            523192 264 -    852752 CTTAATTGAGA--TAGGTATAGAAAC-TGC-TTTCGGTTATG--AGGATGGTGGTCACCTC-CTCAGCATCATTCCCTGCCCCTTCATCATCTG-TCATGTGAT--AGTTCCCT----CTGGCCTGCGGTAGGTCCTAAC--AGTCGTTGCTCCCCAGCTTTATTCCTTTGGCTGTATTTAG---ATTGGCCA-----GTCTATCTGGGG----GC-----GTGCATGA-------TGCTTATATTTTCACAGTGACAAATTGGATCCCTGCCTGGAACTAACTTTGTTCACCCACTGAAGCCC-----
i dasNov3.JH570468          C 0 C 0
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=115197.000000
s hg38.chr17_JH159148v1_alt    36348 12 +     88070 AAGACTAACAGG
s panTro5.chr17             16347400 12 +  83181570 AAGACTAACAGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251941 12 +  83442489 AAGACTAACAGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099294 12 +   4267968 AAGACTAACAGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084066 12 -   2193130 AAGACTAAGAGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28050225 11 -  80997621 -AGACTAACAGG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106857 12 +  10377808 AAGACTAACAGG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1998165 12 -   8458610 AAGGTTAACAGG
i cerAty1.NW_012006043v1    C 0 T 6034
s chlSab2.chr16             64962023 12 +  75148670 AAGACTAACAGG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2182685 12 +   4244037 AAGGTTAACAGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205717 12 +   4569836 AGGGCTAACAGG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46149010 12 - 159171411 AAGGCTAACAGG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1870076 12 +   3513951 AAGTCTAACAGG
i saiBol1.JH378271          I 460 C 0
s cebCap1.NW_016107543v1        5651 12 -   4077172 AAGTCTAACAGG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7023458 12 -   7032639 AAGTCTAACAGG
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22861283 12 +  28711273 AAGACTAACAGG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22146683  8 - 122082543 ----CAAACTGT
i mm10.chr11                C 0 I 6
s canFam3.chr9              21492273 12 +  61074082 GACGCCCGCAGG
i canFam3.chr9              I 2 C 0
e dasNov3.JH570468            523456  0 -    852752 C
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=634771.000000
s hg38.chr17_JH159148v1_alt    36360 77 +     88070 CATTGCTCTCT--GTACAACCCACACCACCTGTGTCTTTCAGCTCCATCAAAGTCACTTGGGAAGAGGGTGATTGGTAC
s panTro5.chr17             16347412 77 +  83181570 CATTGCTCTCT--GTACAACCCACACCACCTGTGTCTTTCAGCTCCATCAAAGTCACTTGGGAAGAGGGTGATTGGTAC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16251953 77 +  83442489 CATTGCTCTCT--GTACAACCCACACCACCTGTGTCTTTCAGCTCCATCAAAGTCACTTGGGAAGAGGGTGATTGGTAC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099306 77 +   4267968 CATTGCTCTCT--GTACAACCTACACCACCTGTGTCTTTCAGCTCCATCAAAGTCACTTGGGAAGAGGGTGATTGGTAC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084078 77 -   2193130 CATTGCTCTCT--GTACAATCCACACCACCTGTGTCTTTCAGCTCCATCAAAGTCACTTGGGAAGAGGGTGATTGGTAC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28050236 77 -  80997621 CATCTCTCTCT--GTACAACCCACACCACCTGTGTCTTTCAGTTCCCTCAAAGTCACTTGGGAAGAGGGTGATTGGTAC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106869 77 +  10377808 CATCTCTCTCT--GTACAACCCACACCACCTGTGTCTTTCAGTTCCCTCAAAGTCACTTGGGAAGAGGGTGATTGGTAC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992143 77 -   8458610 CATCTCTCTCT--GTACAACCCACACCACCTGTGTCTTTCGGTTCCCTCAAAGTCACTTGGGAAGAGGGTGATTGGTAC
i cerAty1.NW_012006043v1    T 6034 I 70
s chlSab2.chr16             64962035 75 +  75148670 CATCTCTC--T--GTGCCACCCACACCACCTGTGTCTTTCAGTTCTTTGAACATCACTTGGGAAGAGGGTGTCTGGCAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2182697 77 +   4244037 AATCTCTCTAT--GTACGACCTACTTTACCTGTCTCTTCCAGTTCTACAAAAGCCACTTGGGAAGAGGGTGTTCGGCAC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205729 76 +   4569836 CATCTCTCTAT--GTGAGACCTACTTAACCTGTCTCTTCCAGTTCTACAAAAGCCTCTT-GGAAGAGGATGTTTGGCAC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46149022 75 - 159171411 --TATCTCTCT--GTAAAACACACACCACCTGTGTCTTTCAGTTCCATCAAAATCACTTGGGAAGAGGGTGTTTGGCAC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1870088 75 +   3513951 --CATCTCTCT--GTAGAACACACACCACCTGTGTCTTTCAGTTCCATCAAAATCACTTGGGAAGAGGGTGTTTGGTAC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        5663 73 -   4077172 --CATCTCTCT--GTAGA--ACACGTCACCCGTGTCTTTCAGTTCCACCAAAATCACTTGGGAAGAGGGTGTTTGGCAC
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7023470 75 -   7032639 --CATCTCTGT--GTAGAACACACACCACCTGTGTCTTTCAGTTCCATCAAAATCACTTGGGAAGAGGGTGTTTGGCAC
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22861295 56 +  28711273 ----CATCTCT--GTACAACCTACTCCACCCATGTCTCCCAGTTCTGTCAAA-----------------CATTTGGCAC
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22146697 77 - 122082543 TGTCAATCTCT--GTGTAAATTCCTCTCACTGTGTATCTGAGGCATAGTAAGGGTGCTGTGAGCTAGGGTTTCTGGAAC
i mm10.chr11                I 6 C 0
s canFam3.chr9              21492285 79 +  61074082 CATCTGTCTCTTGGAGCACCCTACCTCGTTTGCATAGGGCAGTGCATTCAAAGACACTTGGGTGGAGGACATCTGGCAT
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            523456 77 -    852752 CATTTTTCTCC--ATTGTAACAACTTCTCCGGCAAATCCCTGTTTTATCAAAGATATTTGGGTAGATGTTGTTTAGCAT
i dasNov3.JH570468          C 0 C 0
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=181902.000000
s hg38.chr17_JH159148v1_alt    36437 21 +     88070 AATGTGTTTTATGTGTCAGAG
s panTro5.chr17             16347489 21 +  83181570 AATGTGTTTTATGTGTCAGAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252030 21 +  83442489 AATGTGTTTTATGTGTCAGAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099383 21 +   4267968 AATGTGTTTTATGTGTCAGAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084155 21 -   2193130 AGTGTATTTTACGTGTCAGAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28050313 20 -  80997621 -GTGCATCCTGTGTGTCAGAG
i macFas5.chr16             C 0 I 1
s macNem1.NW_012014910v1     2106946 20 +  10377808 -GTGCATTCTGTGTGTCAGGG
i macNem1.NW_012014910v1    C 0 I 1
s chlSab2.chr16             64962110 21 +  75148670 AGTGTGTTCCATGTGGCGGAG
i chlSab2.chr16             C 0 I 5414
s manLeu1.NW_012106252v1     2182774 21 +   4244037 AATGTATTCCATGTGGCAGAG
i manLeu1.NW_012106252v1    C 0 I 1
s colAng1.NW_012122154v1     2205805 21 +   4569836 AATGTGTTCCACGTGGCAGAG
i colAng1.NW_012122154v1    C 0 I 1
s calJac3.chr5              46149097 21 - 159171411 AGTGTGTTCTATGTGGCAGAG
i calJac3.chr5              C 0 I 1
s saiBol1.JH378271           1870163 21 +   3513951 AGTGTGTTCTATGTGGCAGAG
i saiBol1.JH378271          C 0 I 1
s cebCap1.NW_016107543v1        5736 21 -   4077172 CGTGTGTTCTATGTGGCAGAG
i cebCap1.NW_016107543v1    C 0 I 1
s aotNan1.NW_018502359v1     7023545 21 -   7032639 AGTGTGTTCTATGTGACAGAG
i aotNan1.NW_018502359v1    C 0 I 1
s otoGar3.GL873537          22861351 21 +  28711273 CGTGTGTTTCATGTGGCAGAG
i otoGar3.GL873537          C 0 I 1
s mm10.chr11                22146774 19 - 122082543 AATGTGTTTCA--TAGCAGAG
i mm10.chr11                C 0 I 9
s canFam3.chr9              21492364 21 +  61074082 CATGTCTTCCATATGTCAAGG
i canFam3.chr9              C 0 I 1
s dasNov3.JH570468            523533 21 -    852752 AATCTCTTCCACATGGCAAAT
i dasNov3.JH570468          C 0 I 1
e cerAty1.NW_012006043v1     1992220 70 -   8458610 I
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=78370.000000
s hg38.chr17_JH159148v1_alt    36458 12 +     88070 AGAACCAAAGCA
s panTro5.chr17             16347510 12 +  83181570 AGAACCAAATCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252051 12 +  83442489 AGAACCAAATCA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099404 12 +   4267968 AGAACCAAAGCA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084176 12 -   2193130 AGAACCAAAGCA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28050334 12 -  80997621 AGAATCAAAGCA
i macFas5.chr16             I 1 C 0
s macNem1.NW_012014910v1     2106967 12 +  10377808 AGAATCAAAGCA
i macNem1.NW_012014910v1    I 1 C 0
s manLeu1.NW_012106252v1     2182796 12 +   4244037 AGAGCCAAAGCA
i manLeu1.NW_012106252v1    I 1 T 6170
s colAng1.NW_012122154v1     2205827 12 +   4569836 AGAACCAAAGCA
i colAng1.NW_012122154v1    I 1 C 0
s calJac3.chr5              46149119 12 - 159171411 AGAATCGAAGTA
i calJac3.chr5              I 1 C 0
s saiBol1.JH378271           1870185 12 +   3513951 AGAATCAAAGTC
i saiBol1.JH378271          I 1 C 0
s cebCap1.NW_016107543v1        5758 12 -   4077172 AGAATTGAAGTA
i cebCap1.NW_016107543v1    I 1 C 0
s aotNan1.NW_018502359v1     7023567 12 -   7032639 AGAATGGAAGTA
i aotNan1.NW_018502359v1    I 1 C 0
s otoGar3.GL873537          22861373 12 +  28711273 CGAGCCAGAGTA
i otoGar3.GL873537          I 1 C 0
s mm10.chr11                22146802 12 - 122082543 TAAACCAATACT
i mm10.chr11                I 9 I 5
s canFam3.chr9              21492386 11 +  61074082 CGAATCGA-GCA
i canFam3.chr9              I 1 C 0
s dasNov3.JH570468            523555 12 -    852752 AGAAGCAAAACA
i dasNov3.JH570468          I 1 C 0
e chlSab2.chr16             64962131 5414 +  75148670 I
e cerAty1.NW_012006043v1     1992220 70 -   8458610 I
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=81188.000000
s hg38.chr17_JH159148v1_alt    36470 11 +     88070 GGTGGGTACAA
s panTro5.chr17             16347522 11 +  83181570 GGTGGGTACAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252063 11 +  83442489 GGTGGGTACAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099416 11 +   4267968 GGTGGGTACAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084188 11 -   2193130 GGTGGGTACAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28050346 11 -  80997621 GGTGGGTACAA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106979 11 +  10377808 GGTGGGTACAA
i macNem1.NW_012014910v1    C 0 C 0
s colAng1.NW_012122154v1     2205839 11 +   4569836 AACAGGTAGAA
i colAng1.NW_012122154v1    C 0 I 3
s calJac3.chr5              46149131 11 - 159171411 GATGGGTACAA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1870197 11 +   3513951 GGTGGGTACAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        5770 11 -   4077172 GGTGGGAACAA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7023579 11 -   7032639 GATGGGTACAA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22861385 11 +  28711273 GGTTGGCAGAA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22146819 11 - 122082543 AATGAaaacaa
i mm10.chr11                I 5 I 20
s canFam3.chr9              21492397 11 +  61074082 GGTGGATAGAA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            523567 11 -    852752 AGTAGATAGAA
i dasNov3.JH570468          C 0 C 0
e manLeu1.NW_012106252v1     2182808 6170 +   4244037 T
e chlSab2.chr16             64962131 5414 +  75148670 I
e cerAty1.NW_012006043v1     1992220 70 -   8458610 I
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=140349.000000
s hg38.chr17_JH159148v1_alt    36481 26 +     88070 ---AGAGAAGTCCAG----TGTGATTTAGA--TAA
s panTro5.chr17             16347533 26 +  83181570 ---GGAGAAGTCCAG----TGGGATTTAGA--TAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252074 26 +  83442489 ---GGAGAAGTCCAG----TGGGATTTAGA--TAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099427 26 +   4267968 ---GGAGAAGTCCAG----TGGGATTTAGA--TAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084199 26 -   2193130 ---GGAGAAGTCCAG----TGGGATTTAGA--TAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28050357 26 -  80997621 ---GGAGAAGTCCAG----TGGGATTTAGA--TAG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2106990 26 +  10377808 ---GGAGAAGTCCAG----TGGGATTTAGA--TAG
i macNem1.NW_012014910v1    C 0 C 0
s chlSab2.chr16             64967545 26 +  75148670 ---AGAGAATTCCAC----TGGGATTTAGA--GAG
i chlSab2.chr16             I 5414 C 0
s colAng1.NW_012122154v1     2205853 26 +   4569836 ---GGAGGAGTTCAC----TGGAATTCATG--AAG
i colAng1.NW_012122154v1    I 3 T 6247
s calJac3.chr5              46149142 26 - 159171411 ---AGAGAAGTCCAC----TGGGATTTAGA--CAG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1870208 26 +   3513951 ---GGAGAAGTCCAC----TGGGATTTAGA--TAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        5781 26 -   4077172 ---GGAGAAGTCCAC----TGGGATTTAGA--TAG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7023590 26 -   7032639 ---AGAGAAGTCCGC----TGGGATTTAGA--TAG
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22861396 26 +  28711273 ---GAAGCAGCAAAC----CAGGACTAGGA--AGG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22146850 30 - 122082543 ---acaaacaCCCAGCACTTAGGAATAAGC--AGA
i mm10.chr11                I 20 C 0
s canFam3.chr9              21492408 15 +  61074082 ------------------ACAGGACTAAAC--CAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            523578 31 -    852752 GAAGAAGAATTACCC----TGGAATTCAGAATTAA
i dasNov3.JH570468          C 0 C 0
e manLeu1.NW_012106252v1     2182808 6170 +   4244037 T
e cerAty1.NW_012006043v1     1992220 70 -   8458610 I
e rheMac8.chr16             30135516 2040 -  77216781 I

a score=1371964.000000
s hg38.chr17_JH159148v1_alt    36507 153 +     88070 CATCAGGCAATCTTTGCCCtggggtgacca----ttcatcttgatt-------------tgtctgg---gagtgagggactt--------------------ac-caggatgagaatg---------------tgggactttctgtaacat-aactactttagattcaggcaaacctgcatgagctgTA---GCTCTAGCC----CTAACTCTGG---------------TA
s panTro5.chr17             16347559 157 +  83181570 CATCAGGCAATCTTTGCCCTGgggtgacca----ttcatcttgatt-------------agtctgg---gagtgagggactt--------------------ac-caggatgataatg---------------tgggactttctgtcacat-aactgctttagattcaggcaaacctgcatgagctgTG---GCTCTAGCCCTAACTAACTCTGG---------------TA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252100 157 +  83442489 CATCAGGCAATCTTTGCCCtggggtgacca----ttcatcttgatt-------------agtctgg---gagtgagggactt--------------------ac-caggatgataatg---------------tgggactttctgtcacat-aactgctttagattcaggcaaacctgcatgagctgTG---GCTCTAGCCCTAACTAACTCTGG---------------TA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099453 153 +   4267968 CATCAGGCAATCTTTGCCCtggggtgacca----ttcatcttgatt-------------tgtttgg---gagtgagggactt--------------------ac-caggatgagaatg---------------tgggactttctgtaacat-aactgctttagattcaggcaaacctgcaggagCCGTG---GCTCTAGCC----CTAACTCTGG---------------TA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084225 154 -   2193130 CATCAGGCAATCTTTGCCCtggggtgacca----ttcatcctgatt-------------tgtctgg---gagtgacgggctt--------------------acgcaggatgagaata---------------cggggctttctgtaacat-aactgctttagattcaggcaaacctgcatgagctgTg---gctctagcc----ctaactctgg---------------ta
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30137556 153 -  77216781 CATCAGGCAATCTTTGCCCtggggtgacca----ttcatcttgatt-------------tgtctgg---gagtgatgggctt--------------------ac-caggatgagaatg---------------tgggactttGTGTAACAT-AACTACTTTAGATTTAGTCAAACCAGCCTGAATTGTG---GCTCTAGCC----CTAACTCTGG---------------TA
i rheMac8.chr16             I 2040 C 0
s macFas5.chr16             28050383 153 -  80997621 CATCAGGCAATCTTTGCCCtggggtgacca----ttcatcttgatt-------------tgtctgg---gagtgatgggctt--------------------ac-caggatgagaatg---------------tgggactttGTGTAACAT-AACTACTTTAGATTTAGTCAAACCAGCCTGAATTGTG---GCTCTAGCC----CTAACTCTGG---------------TA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2107016 153 +  10377808 CATCAGGCAATCTTTGCCCtggggtgacca----ttcatcttgatt-------------tgtctgg---gagtgatgggctt--------------------ac-caggatgagaatg---------------tgggactttGTGTAACAT-AACTACTTTAGATTTAGTCAAACCAGCCTGAATTGTG---GCTCTAGCC----CTAACTCTGG---------------TA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992290 153 -   8458610 CATCAGGCAATCTTTGCCCtggggtgacca----ttcatcttgatt-------------tgtctgg---gagtgatgggctt--------------------ac-caggatgagaatg---------------tgggactttGTGTAACAT-AACTACTTTAGATTTAGTCAAACCAGTCTGAATTGTG---GCTCTAGCC----CTAACTCTGG---------------TA
i cerAty1.NW_012006043v1    I 70 C 0
s chlSab2.chr16             64967571 154 +  75148670 CATAAAGCAATCTATCCCCTGGGGCGACCA----TTCGTTCTGACT-------------TACCTGT---GAGTGTGGTGATT--------------------AC-CAGGATGAGAATG---------------TAGGACTTTCTATCACGT-AACTGGTTGAGATTCAGACCAACCAGCATGTGCTGTG---GCTCTAGCC----TTAAACCTAG--------------TTA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2176638 153 +   4244037 CATCAGGCAATCTTTGCCCTGgggtgacca----ttcatcttgatt-------------tgtctgg---gagtgatgggctt--------------------ac-caggatgagaatg---------------tgggactttGTGTAACAT-AACTACTTTAGATTTAGTCAAACCAGCCTGAATTGTG---GCTCTAGCC----CTAACTCTGG---------------TA
i manLeu1.NW_012106252v1    T 6170 C 0
s colAng1.NW_012122154v1     2199632 153 +   4569836 CATCAGGGAATCTTTGCCCtggggtgacca----ttcatcttgatt-------------tgtctgg---gagtgatgggctt--------------------ac-caggatgagaatg---------------tgggactttGTGTAACAT-AACTACTTTAGATTTAGTCAAACCAGCCTGAATTGTG---GCTCTAGCC----CTAACTCTGG---------------TG
i colAng1.NW_012122154v1    T 6247 C 0
s calJac3.chr5              46149168 153 - 159171411 CATCAAGCAATCTTTGCCCtggggtgacca----ttcatcctgatt-------------tgtctgg---gagtgaggggctt--------------------ac-caggaatagaatg---------------taggactttctgtgacat-aactgctttagattgaggccaaccagcatgagctgTG---TCTC-AGCT----CTGATCCTGG--------------TTA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1870234 153 +   3513951 CATCAAGCAATCTTTGCCCTGGTgtgaccc----ttcgtcctgatt-------------tgtctgg---gagtgaggggctt--------------------ac-caggaatagaatg---------------taagactttctatgacat-aactgctttggattcaggccaaccagcatgagCCGTG---GCTC-AGCC----ATAAGCCTGG--------------TTA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        5807 153 -   4077172 CATCAAGCACTCTTTGTCCTGgggtgacca----ttcattctgatt-------------tgtctgg---gagtgaggggctt--------------------ac-caggaatagaatg---------------taggactttcTCTGACAT-AACTGCTTTAGATTCAGACCAACCAGCATGAGCCATG---TCTC-AGCC----CTAATCCTGG--------------TTA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7023616 153 -   7032639 CGTCAAGCAATCTTTGCCCtggggtgacca----ttcatcctgctt-------------tgtctgg---gagtgaggggctt--------------------ac-caggaatagaatg---------------taggactttctatgacat-aactgCTTTAGATTGAGGCCAACCTGCATGAGCGGTG---GCTC-AGCC----CTAAGCCTGG--------------TTA
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22861422 163 +  28711273 TGTCA------TTTTAC----AGGTGACCA----TTCACTTTGGTT-------------TGCCTGGACTGAATGAATAGTTC--------------------AC-AACAGTGAGAATA---------------TGAGATCTTTTGTGATAT-GATCACCATAGATCCAGGGAAACCAGCATAAACTGAGGACGCTT-AGCC----CTAACCCTGGATATGGGGGTTTGGTTA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22146880 194 - 122082543 CATCAGGGGATGTGT------GGGTGAGCA----TGAGTCTTGACTCTGACTGGGGCAGCTCCTGG---GGTAGATGTACTTTTAGCTTTAGAGCCAGACAAAC-TGGAGTGGGCAAGATGACTCCAGTGCACAGGGGCTGTCTGCAGCATCAAGGATCTTAGACT--GGTGATCTTTCCCATGATTCT---CTTTTACTT----CTAACCCTAT---------------CT
i mm10.chr11                C 0 C 0
s canFam3.chr9              21492423 141 +  61074082 CATCCATGAACATACTTCCT-gagtgaccagcgtcctgctctgatt-------------tacccag---aaatgggtgtttt--------------------cc-cagg------ccg---------------tgggccgttcagtggtat-aagtggggcagtttgggatgagtcgg---------tg---accctCGTC----CTAACCTTGT---------------TA
i canFam3.chr9              C 0 T 11546
s dasNov3.JH570468            523609 127 -    852752 --------------CAACCTGAAGT--TCC----ACCATCCTTGTT-------------TCACCAG---GGCTGTGGG--TT--------------------CC-CATG------ATG---------------TGGGGCTTTG-GTGATCA-AACTTGGTGTGGTTTAGGAAACCCAG-ATGAGATTCC---AGTCTAGTC----CTGACTTGTG---------------TC
i dasNov3.JH570468          C 0 C 0

a score=79502.000000
s hg38.chr17_JH159148v1_alt    36660 10 +     88070 CTAACA--CAAT---
s panTro5.chr17             16347716 10 +  83181570 CTAACA--CAAT---
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252257 10 +  83442489 CTAACA--CAAT---
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099606 10 +   4267968 CTAACA--CACT---
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084379 10 -   2193130 ctaaca--cagt---
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30137709 10 -  77216781 CTAGCA--TAGT---
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28050536 10 -  80997621 CTAGCA--TAGT---
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2107169 10 +  10377808 CTAGCA--TAGT---
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992443 10 -   8458610 CTAGCA--TAGT---
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64967725 10 +  75148670 CTAGCA--CAGT---
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2176791 10 +   4244037 CTAGCA--TAGT---
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2199785 10 +   4569836 CTAGCA--TAGT---
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46149321 10 - 159171411 CCAGCA--CAGT---
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1870387 10 +   3513951 CCAGCA--CAGT---
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        5960 10 -   4077172 ACAGCA--CAGT---
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7023769 10 -   7032639 CCAGCA--CAGT---
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22861585 10 +  28711273 CTAACT--GAAT---
i otoGar3.GL873537          C 0 I 110
s mm10.chr11                22147074  6 - 122082543 CT------CTGT---
i mm10.chr11                C 0 C 0
s canFam3.chr9              21481018 10 +  61074082 TTAACA--TATT---
i canFam3.chr9              T 11546 I 14
s dasNov3.JH570468            523736 15 -    852752 CTACCACTCAGTAAC
i dasNov3.JH570468          C 0 C 0

a score=68085.000000
s hg38.chr17_JH159148v1_alt    36670  9 +     88070 ---CAGGGCCAT
s panTro5.chr17             16347726  9 +  83181570 ---CAAGGCCAT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252267  9 +  83442489 ---CAAGGCCAT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099616  9 +   4267968 ---CAGGGCCAT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084389  9 -   2193130 ---cagggccat
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30137719  9 -  77216781 ---CAGTGCCAT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28050546  9 -  80997621 ---CAGTGCCAT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2107179  9 +  10377808 ---CAGTGCCAT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992453  9 -   8458610 ---CAGTGCCAT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64967735  9 +  75148670 ---TAGCGTCAT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2176801  9 +   4244037 ---CAGTGCCAT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2199795  9 +   4569836 ---CGTTGCCAT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46149331  9 - 159171411 ---CCGTGCCAT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1870397  9 +   3513951 ---CAGTGCCAT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        5970  9 -   4077172 ---CAGTGCCAT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7023779  9 -   7032639 ---CAGTGCCAT
i aotNan1.NW_018502359v1    C 0 C 0
s mm10.chr11                22147080  8 - 122082543 ----CCGGCCTT
i mm10.chr11                C 0 I 2
s canFam3.chr9              21481042  9 +  61074082 ---ATGCACTAT
i canFam3.chr9              I 14 I 1
s dasNov3.JH570468            523751 12 -    852752 CTCAAGGGACAC
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22861595 110 +  28711273 I

a score=45730.000000
s hg38.chr17_JH159148v1_alt    36679 6 +     88070 TTCTTC
s panTro5.chr17             16347735 4 +  83181570 TTCT--
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252276 4 +  83442489 TTCT--
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099625 4 +   4267968 TTCT--
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084398 6 -   2193130 ttcttc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30137728 6 -  77216781 TTCTTC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28050555 6 -  80997621 TTCTTC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2107188 6 +  10377808 TTCTTC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992462 6 -   8458610 TTCTTC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64967744 6 +  75148670 CTCTTC
i chlSab2.chr16             C 0 T 5394
s manLeu1.NW_012106252v1     2176810 6 +   4244037 TTCTTC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2199804 6 +   4569836 TTCTTC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46149340 6 - 159171411 TTCTTC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1870406 6 +   3513951 TTCTTC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        5979 6 -   4077172 TTCTTC
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7023788 6 -   7032639 TTCTTC
i aotNan1.NW_018502359v1    C 0 C 0
s otoGar3.GL873537          22861705 6 +  28711273 ttcttc
i otoGar3.GL873537          I 110 C 0
s mm10.chr11                22147090 6 - 122082543 TCCTTC
i mm10.chr11                I 2 I 6
s canFam3.chr9              21481052 5 +  61074082 TTTTG-
i canFam3.chr9              I 1 C 0
s dasNov3.JH570468            523763 6 -    852752 ACCTGC
i dasNov3.JH570468          C 0 C 0

a score=2036244.000000
s hg38.chr17_JH159148v1_alt    36685 233 +     88070 --TCTCTCTGTCTATTTCTTTTTAATGAAGGAATTAGATGAGTTGAGATGATACCTGATTTGTCTTGGAGTTCCAACATA-TTTAAACATTTTTTA---GGTATACCATTCATTTTGGAAGAA-TGCAAATT-ATTAATTTCCAACT-----TGATATA-----AC-------TGTAAATACATCTGTGTTCCCATTACCAGGTTAGGAAATAGAAATTAATCCCATTCCCTTTCAGTTATATTTCCTTACTCATCCC
s panTro5.chr17             16347739 231 +  83181570 ----TCTCCGTCTATTTCTTTTTAATGAAGGAATTAGATGAGTTGAGATGATACCTGATTTGTCTTGGAGTTCTAACATA-TTTAAACATTTTTTA---GGTATACCATTCATTTTGGAAGAA-TGCAAATT-ATTAATTTCCAACT-----TGATATA-----AC-------TGTAAATACATCTGTGTTCCCATTACCAGGTTAGGAAATAGAAATTAATCCCATTCGCTTTCAGTTATATTTCCTTACTCATCCC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252280 231 +  83442489 ----TCTCCGTCTATTTCTTTTTAATGAAGGAATTAGATGAGTTGAGATGATACCTGATTTGTCTTGGAGTTCTAACATA-TTTAAACATTTTTTA---GGTATACCATTCATTTTGGAAGAA-TGCAAATT-ATTAATTTCCAACT-----TGATATA-----AC-------TGTAAATACATCTGTGTTCCCATTACCAGGTTAGGAAATAGAAATTAATCCCATTCGCTTTCAGTTATATTTCCTTACTCATCCC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099629 231 +   4267968 ----TCTCTGTCTATTTCTTTTTAATGAAGGAATTAGATGAGTTGAGATGATACCTGATTTGTCTTGGAGTTCTAACATA-TTTAAACATTTTTTA---GGTATACCATTCATTTTGGAAGAA-TGCAAATT-ATTAATTTCCAACT-----TGATATA-----AC-------TGTAAATACATCTGTGTTCCCATTACCAGGTTAGGAAATAGAAATTAATCCCATTCCCTTTCAGTTATATTTCCTTACTCATCCC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084404 233 -   2193130 --tctctctgtctatttctttttaatgaaggaattagatgagttgagatgatacctgatttgtcttggagttctaacatA-TTAAAACATTTTTAA---GGTATCCCATTCATTTTGGAAGAA-TGCAAATT-ATTAATTTCCAACT-----TGATATA-----AC-------TGTAAATACATCTGTGTTCCCATTACCGGGTTAGGAAATAGAAATTAATCCCATTCCCTTTCAGTTATATTTCCTTACTCATCCC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30137734 225 -  77216781 --TCTCTTTCTCCATTTCTTTTTAATGAAGGAATTAGATGAGTTGAGATGATATCTGATTCGTCTTGGAGTTCCAACATA-TTAAAACATTGTTTA---GGTGCACCATTCATTTTGGAAGAA-TGCAAATT-ATTAATTCCCAATT-----TGATATA-----ACTT-----TGTAAATACATCTATGTTCCCATTACTGGGTTATGAAATAGAAATTAATCCCATTCCCTTTCAG----------TTACTCATCCC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28050561 225 -  80997621 --TCTCTTTCTCCATTTCTTTTTAATGAAGGAATTAGATGAGTTGAGATGATATCTGATTCGTCTTGGAGTTCCAACATA-TTAAAACATTGTTTA---GGTGCACCATTCATTTTGGAAGAA-TGCAAATT-ATTAATTCCCAATT-----TGATATA-----ACTT-----TGTAAATACATCTATGTTCCCATTACCGGGTTATGAAATAGAAATTAATCCCATTCCCTTTCAG----------TTACTCATCCC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2107194 225 +  10377808 --TCTCTTTCTCCATTTCTTTTTAATGAAGGAATTAGATGAGTTGAGATGATATCTGATTCGTCTTGGAGTTCCAACATA-TTAAAACATTGTTTA---GGTGCACCATTCATTTTGGAAGAA-TGCAAATT-ATTAATTCCCAATT-----TGATATA-----ACTT-----TGTAAATACATCTATGTTCCCATTACTGGGTTATGAAATAGAAATTAATCCCATTCCCTTTCAG----------TTACTCATCCC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992468 225 -   8458610 --TCTCTTTCTCCATTTCTTTTTAATGAAGGAATTAGATGAGTTGAGATGATATCTGATTCGTCTTGGAGTTCTAACATA-TTAAAACATTGTTTA---GGTGCACCATTCATTTTGGAAGAA-TGCAAATT-ATTAATTCCCAATT-----TGATATA-----ACTT-----TGTAAATACATCTATGTTCCCATTACCGGGTTACGAAATAGAAATTAATCCCATTCCCTTTCAG----------TTACTCATCCC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64962356 241 +  75148670 --TCTCTCTACATATTTCTTTTTAATGAAGCAATTAGATGAGCTGAGATGATACCTGATTCATCGTGGAGTTCTAACATGTTTAAAACATTTTCTA---GGTATACCATTCATTTGAGAAGAA-TGCAAGGT-ATTAATTTCCAACT-----TGATATAGTATTATAT-----TGTAAATATATTTAAGGCCCCATTACCCGATTAGGAAATAGAAATTAATCCCATTCTCTCCTAATTATATCCTCTTACTCATTCC
i chlSab2.chr16             T 5394 C 0
s manLeu1.NW_012106252v1     2176816 225 +   4244037 --TGTCTTTCTCCATTTCTTTTTAATGAAGGAATTAGATGAGTTGAGATGATATCTGATTCGTCTTGGAGTTCTAACATA-TTAAAACATTGTTTA---GATGCACCATTCATTTTGGAAGAA-TGCAAATT-ATTAATTCCCAATT-----TGATATA-----ACTT-----TGTAAATACATCTATGTTCCCATTACCGGGTTACGAAATAGAAATTAATCCCATTCCCTTTCAG----------TTACTCATCTC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2199810 225 +   4569836 --TCTCTTTCTCCATTTCTTTTTAATGAAGGAATTAGATGAGTTGAGATGATATCTGATTCGTCTTGGAGTTCTAATATA-TTAAAACATTGTTTA---GAAGCACCATTCATTTTGGAAGAA-TGCAAATT-ATTAATTCCCAATT-----TGATATA-----ACTT-----TGTAAATACATCTATGTTCCCATTAGCGGGTTACGAAATAGAAATTAATCCCATTCCCTTTCAG----------TTACTCATCCC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46149346 226 - 159171411 ----------TGTATTTC-TTTTAATGAAGGAATTAGTTGAGTTGAGATGACACCTGATTCATCTTGGAATTGTAACATA-GTTAAACATTATTTA---GGTACAGAATTCATTTAGGAAGAA-TGTAAATT-ATGAATTTTCAACT-----TGAGCTA-----ACTT-----TGTAAATACATCTGTGATCCCGTTACCAGGTTAGGAAACAGAAATTAATCCCATTCCCTTTAGATTATATTCTCTTACTCATTAC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1870412 226 +   3513951 ----------TGCATTTC-TTTTAATGAAGGAATTAGGTGAGTTGAGATGACCCCTGTTTCGTCTTGGAGTTCCAACATA-TTTAAACATTTTTTA---GGTACACAATTCATTTAGGAAGAA-TGCCAATT-ATTAATTTCTGACT-----TGAGATA-----ACTT-----TGTAAATACATCGTTGATCCCATTACCAAGTTAGGAAACAGAAATTAATCCCATTCCCTTTAGATTATATTCTCTTTCTCATTAC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        5985 223 -   4077172 ----------TGTATTTC-TGTTCATGAAGGAATTAAGTTAGTTGAGACGACACCTGATTTGTC-TGGAGTTGTAACATG-TTTAAACATTTTTCA---GGTACATGATTCATTTAGGAAGAA-TGCCAATT-TTTAATTTCTGACT-----TGAGATT-----GCTT-----TGTAAATGCATC--TGATTCCATTACCAGGTTAGGAAACAGAAATTAATCCCATTCCCTTTAAATTATATTCTCTTACTCATTAT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018502359v1     7023794 226 -   7032639 ----------TGTATTTC-TTTTAATGAAGGAATTAGGTGAGTTGAGAATACATCTAATTCTTTTTGGAATTTTAACATA-TTTATACATTTTTCA---GGTACACAATTCATTTAGGAAGAA-TGCAAATT-ATGAATTTCCAACT-----TGAGATA-----ACTT-----TGTAAATACATCTGTGATCCCACTACCAGGTTAGGAAACAGAAATTAATCCCATTCCCTTTAGATTATATTCTCTTACTCATTAC
i aotNan1.NW_018502359v1    C 0 N 0
s otoGar3.GL873537          22861711 241 +  28711273 --tttttctctcttttgctttTCAATGAGGGAATTAGATTAGTTGCAGTGATACCTGATTTGCCTTTGTGATCTAACATA-TT--AACATTTTGGGGGTGGTATACCACTTTTTAAAAAAGAAGCGCAAATTAACTAATTTCCAGCTATAGAGAATATC-----ACAA-----AGTGAATACATCCCTGTCACTATAACCAAGTTAGG--ATGTAAATTAATTCCCCTCCTTCCAAATTACATCCTCTTACTCATCCC
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22147102 223 - 122082543 ---CATTTCTTTTCTTTCTATTCCATGAAGGAATCATGT-ACCTAATTTATTACCCATTTCACCTGTGAGGACCAAGATA-T---GCCCCCTTCCT---TTTCTACTACTCATACTAATA-AA-TGTAAATT-ATTAATTTCTCATT-----TGAGAGA-----ATAA---AGAGCAAACACAGCCATACCAGTATTA-------AAGAAATGGAAACCAA-CCCAGTTCCTACAAATCATTTCATGTCACTCACCCC
i mm10.chr11                I 6 C 0
s canFam3.chr9              21481057 187 +  61074082 -------TTTTCTCCTATTTTTAATTGAAGGGG--------------------------TAGTCTTGGTG-------ATA-GTGCTCCTTTTTATA---AAT-TATAATACATT-------AA-----AATC-GATAATTTCAAATC-----TGATAGA-----ATATCACCGAGTGAACCC--CCATGTCGCTATTACCAGGTTAACAAAAAGAACTTAATTTAATCCCCTTCAAATTATAATCC-TTATTATTCCC
i canFam3.chr9              C 0 T 3101
s dasNov3.JH570468            523769 181 -    852752 CACCCAACCCTGCACTTTTTCTTCATGAGGGAGTTAGATTAGATCACAT---ACCTGACATTTCTTTGAATTCTAACATA-T----------TTTA--------------------------A----------ACTAATATTCTCCT-----AAAGATA-----ACAT--------------ATCTGTGTCGATATAATCAAGTTTTTAAACAGAACATAAACCCACAGTCT-CAAATTATGCTaccactctcctc--
i dasNov3.JH570468          C 0 C 0

a score=256662.000000
s hg38.chr17_JH159148v1_alt    36918 32 +     88070 CCAAAACCG----CTAATCACTCTATCAAG---TTGTAA
s panTro5.chr17             16347970 32 +  83181570 CCAAAGCCG----CTAATCACTCTATCAAG---TTGTAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252511 32 +  83442489 CCAAAGCCG----CTAATCACTCTATCAAG---TTGTAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099860 32 +   4267968 CCAAAACCG----CTAATCACTCTATCAAG---TTGTAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084637 32 -   2193130 CCAAAACTG----CTAATCACTGTATCAAA---TTGTAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30137959 31 -  77216781 CCAA-ACCG----CTCATCACTCTGTCAAG---TTGTAA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28050786 31 -  80997621 CCAA-ACCG----CTCATCACTCTGTCAAG---TTGTAA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2107419 31 +  10377808 CCAA-ACTG----CTCATCACTCTGTCAAG---TTGTAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992693 31 -   8458610 CCAA-ACCG----CTCATCACTCTGTCAAG---TTGTAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64962597 32 +  75148670 CAAAGACAG----CTAATCACTCTATCAAG---TTGTAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2177041 31 +   4244037 CCAA-ACCG----CTCATCACTCTGTCAAG---TTGTAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200035 31 +   4569836 CCAA-ACTG----CTCATCACTCTGTCACG---TTGTAA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46149572 32 - 159171411 CCAAAACAG----ATAATCCCTCTATCAAG---TTCTAA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1870638 32 +   3513951 CCAAAACAG----ATAATCCCTCTATCAAG---TTTTAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        6208 32 -   4077172 CCCAAACAG----ATAATCCTTCTATCAAG---TTGTAA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1           0 32 -     94492 CCAAAACAG----ATAATCCCTCTATCAAG---TTGTAA
i aotNan1.NW_018505111v1    N 0 C 0
s otoGar3.GL873537          22861952 32 +  28711273 ----AATAGGTCCCTAATCTCTCTATTGAT---TTGTAA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22147325 33 - 122082543 CAAAGGCTG----TTCCTACTACCATCCAGGGTCTGT--
i mm10.chr11                C 0 C 0
s dasNov3.JH570468            523950 28 -    852752 tcaa----g----ataatcactgtactaac---ttgcaa
i dasNov3.JH570468          C 0 I 66269
e canFam3.chr9              21481244 3101 +  61074082 T

a score=126540.000000
s hg38.chr17_JH159148v1_alt    36950 13 +     88070 CCCTGTAGGTCAA
s panTro5.chr17             16348002 13 +  83181570 CCCTGTAGGTCAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252543 13 +  83442489 CCCTGTAGGTCAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099892 13 +   4267968 CCCTGTAGGTCAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084669 13 -   2193130 CCCTGTAGGTCAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30137990 13 -  77216781 CCCTGTAGGTCAA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28050817 13 -  80997621 CCCTGTAGGTCAA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2107450 13 +  10377808 CCCTGTAGGTCAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992724 13 -   8458610 CCCTGTAGGTCAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64962629 13 +  75148670 TCCAGTAGGTAAC
i chlSab2.chr16             C 0 I 5407
s manLeu1.NW_012106252v1     2177072 13 +   4244037 CCCTGTAGGTCAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200066 13 +   4569836 CCCTGTAGGTCAA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46149604 13 - 159171411 CACTGTAGTTCAA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1870670 13 +   3513951 CACTGTAGTTCAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        6240 13 -   4077172 CACTGTAGTCCAA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1          32 13 -     94492 CACTGTAGTTCAA
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22861984 13 +  28711273 CACTGTAGATACA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22147358 11 - 122082543 --TTGTCGTCCAG
i mm10.chr11                C 0 C 0
e canFam3.chr9              21481244 3101 +  61074082 T
e dasNov3.JH570468            523978 66269 -    852752 I

a score=206348.000000
s hg38.chr17_JH159148v1_alt    36963 24 +     88070 TTTGGC--TTTT----CCTTTTTTACTTCT
s panTro5.chr17             16348015 24 +  83181570 TTTGGC--TTTT----CCTTTTTCACTTCT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252556 24 +  83442489 TTTGGC--TTTT----CCTATTTCACTTCT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099905 24 +   4267968 TTTGGC--TTTT----CCTTTTTTACTTCT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084682 24 -   2193130 TTTGGC--TTTT----CCTTTTTTACTTCT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30138003 24 -  77216781 TTTGGC--TTTT----CCTTTTTTACTTCT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28050830 24 -  80997621 TTTGGC--TTTT----CCTTTTTTACTTCT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2107463 24 +  10377808 TTTGGC--TTTT----CCTTTTTTACTTCT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992737 24 -   8458610 TTTGGC--TTTT----CCTTTTTTACTTCT
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2177085 24 +   4244037 TTTGGC--TTTT----CCTTTTTTACTTCT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200079 24 +   4569836 TTTGGC--TTTT----CCTTTTTTACTTCT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46149617 24 - 159171411 TCTGCC--TTTT----TCTTTTTTACTTCT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1870683 26 +   3513951 TTTGGCTTTTTT----TTTTTTTTACTTCT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        6253 24 -   4077172 TTTGGC--TTTT----TCTTTTTTACTTCT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1          45 24 -     94492 TTTGAC--TTTT----TCTTTTTTACTTCA
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22861997 22 +  28711273 --------TTTTGAGGTGTTTTTGACATTT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22147369 24 - 122082543 TCCTGG--GCAT----CATGTTTAACCTCA
i mm10.chr11                C 0 C 0
e canFam3.chr9              21481244 3101 +  61074082 T
e dasNov3.JH570468            523978 66269 -    852752 I
e chlSab2.chr16             64962642 5407 +  75148670 I

a score=155487.000000
s hg38.chr17_JH159148v1_alt    36987 16 +     88070 GTGTGAATAAAAATTA
s panTro5.chr17             16348039 16 +  83181570 GTGTGAATAAAAATTA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252580 16 +  83442489 GTGTGAATAAAAATTA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099929 16 +   4267968 GTGTGAATAAAAATTA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084706 16 -   2193130 GTGTGAATAAAAATTA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30138027 16 -  77216781 GTGCGAATAAAAATTA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28050854 16 -  80997621 GTGCGAATAAAAATTA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2107487 16 +  10377808 GTGCGAATAAAAATTA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992761 16 -   8458610 GTGTGAATAAAAATTA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64968049 16 +  75148670 ATGTGAATAAAAAGTA
i chlSab2.chr16             I 5407 C 0
s manLeu1.NW_012106252v1     2177109 16 +   4244037 GTGCGAATAAAAATTA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200103 16 +   4569836 GTGTGAATAAAAATTA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46149641 16 - 159171411 GTGTGAACTAAAATGA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1870709 16 +   3513951 GTGTGAATTAAAATGA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        6277 16 -   4077172 GTGTGAATTAAAATGA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1          69 16 -     94492 GTGTGAATTAAAATGA
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22862019 13 +  28711273 ACGTAAAAGAAAA---
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22147393 16 - 122082543 ATGCCAATCAAAATCA
i mm10.chr11                C 0 T 13865
e canFam3.chr9              21481244 3101 +  61074082 T
e dasNov3.JH570468            523978 66269 -    852752 I

a score=202388.000000
s hg38.chr17_JH159148v1_alt    37003 29 +     88070 CAAAATTTATTTCTCTATTTCTTTCGCAT
s panTro5.chr17             16348055 29 +  83181570 CAATATTTATTTCTCTATTTCTTTCACAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252596 29 +  83442489 CAATATTTATTTCTCTATTTCTTTCACAT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099945 29 +   4267968 CAATATTTATTTCTCTATTTCTTTCGCAT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084722 29 -   2193130 TAATATTTGTTTCTCTATTTCTTTTGCAT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30138043 27 -  77216781 TAATATATGTT--TCTGTTTCTTTTGCAT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28050870 29 -  80997621 TAATATATGTTTCTCTGTTTCTTTTGCAT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2107503 29 +  10377808 TAATATATGTTTCTCTGTTTCTTTTGCAT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992777 29 -   8458610 TAATATATGTTTCTCTGTTTCTTTTGCAT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64968065 29 +  75148670 TAGTATTTGCTTCTCTATTTGTTTGTCAC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2177125 29 +   4244037 TAATATATGTTTCTCTGTTTCTTTTGCAT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200119 29 +   4569836 TAATATATGTTTCTCTATTTCTTTTGCAT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46149657 29 - 159171411 TAATATTTTCTTCTCTATTTTTTTTGCAC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1870725 17 +   3513951 GAATATTTCC------------TTTGCAT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        6293 29 -   4077172 GAATATTTTCTTCTCAATTTCTTTTGCAT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1          85 29 -     94492 GAATATTTCCTTCTCTATTTCTTTTGCAT
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22862032 28 +  28711273 -AAAATTCAACTGGCCACTGTCTTTACAT
i otoGar3.GL873537          C 0 I 5348
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              21481244 3101 +  61074082 T
e dasNov3.JH570468            523978 66269 -    852752 I

a score=87187.000000
s hg38.chr17_JH159148v1_alt    37032 10 +     88070 AATCGCAAGT
s panTro5.chr17             16348084 10 +  83181570 AATCGCAAGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252625 10 +  83442489 AATCGCAAGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099974 10 +   4267968 AATCGCAAGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084751 10 -   2193130 AATCTCAAGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30138070 10 -  77216781 AATCACAAGT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28050899 10 -  80997621 AATCACAAGT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2107532 10 +  10377808 AATCACAAGT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992806 10 -   8458610 AATCACAAGT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64968094 10 +  75148670 AATCAAAAGG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2177154 10 +   4244037 AATCACAAGT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200148 10 +   4569836 AATCACAAGT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46149686 10 - 159171411 AGTCAAAAGT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1870742 10 +   3513951 AATCAAAAGT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        6322 10 -   4077172 AATCAAAAGT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1         114 10 -     94492 AATCAAAAGT
i aotNan1.NW_018505111v1    C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              21481244 3101 +  61074082 T
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I

a score=163515.000000
s hg38.chr17_JH159148v1_alt    37042 16 +     88070 AATAATTACCGCCTAG
s panTro5.chr17             16348094 16 +  83181570 AATAATTATCGCCTAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252635 16 +  83442489 AATAATTATCGCCTAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4099984 16 +   4267968 AATAATTATCGCCTAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084761 16 -   2193130 AATAATTATTGCCTAT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30138080 16 -  77216781 AATAATTATCACCTAG
i rheMac8.chr16             C 0 I 321
s macFas5.chr16             28050909 16 -  80997621 AATAATTATCACCTAG
i macFas5.chr16             C 0 I 321
s macNem1.NW_012014910v1     2107542 16 +  10377808 AATAATTATCACCTAG
i macNem1.NW_012014910v1    C 0 I 308
s cerAty1.NW_012006043v1     1992816 16 -   8458610 AATAATTATCACCTAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64968104 16 +  75148670 AATCATTATCacctag
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2177164 16 +   4244037 AATAATTATCACCTAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200158 16 +   4569836 AATAattatcgcctag
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46149696 16 - 159171411 AATAATTATTGCCTAG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1870752 16 +   3513951 AATAATTATTGCCTAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        6332 16 -   4077172 AATAGTTATTGCCCTg
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1         124 16 -     94492 AATAATTATTGCCTAG
i aotNan1.NW_018505111v1    C 0 C 0
s canFam3.chr9              39587344 16 -  61074082 AAAAACTGTCACCTAG
i canFam3.chr9              T 3025 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I

a score=459548.000000
s hg38.chr17_JH159148v1_alt    37058 47 +     88070 TCATTTTGCACTCTTCATGTCAGCAGATTAGAAGGCAGAGAACAGAG
s panTro5.chr17             16348110 47 +  83181570 TCATTTTGCACTCTTCATGTCAGCAGATTAGAAGGCAGAGAACAGAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252651 47 +  83442489 TCATTTTGCACTCTTCATGTCAGCAGATTAGAAGGCAGAGAACAGAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100000 47 +   4267968 TCATTTTGCATTCTTTATGTCAGCAGATTAGAAGGCAGAGAACAGAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084777 47 -   2193130 TCATTTTGCACTCTTCATGTCAGCAGATTAGAAGGCAGAGAACAGAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30138417 47 -  77216781 TCATTTTGCACTCTTTATGTCAGCTAAGCAGAAGGCAGAGGACACAG
i rheMac8.chr16             I 321 C 0
s macFas5.chr16             28051246 47 -  80997621 TCATTTTGCACTCTTTATGTCAGCTAAGCAGAAGGCAGAGGACACAG
i macFas5.chr16             I 321 C 0
s macNem1.NW_012014910v1     2107866 47 +  10377808 TCATTTTGCACTCTTTATGTCAGCTAAGCAGAAGGCAGAGGACACAG
i macNem1.NW_012014910v1    I 308 C 0
s cerAty1.NW_012006043v1     1992832 47 -   8458610 TCATTTTGCACTCTTTATGTCAGCTAAGCAGAAGGCAGAGGACACAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64968120 47 +  75148670 tcattttggactcttcctgtcagcagagcagcagacagagaaaggag
i chlSab2.chr16             C 0 T 5378
s manLeu1.NW_012106252v1     2177180 47 +   4244037 TCATTTTGCACTCTTTATGTCAGCTAAGCAGAAGGCAGAGGACACAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200174 47 +   4569836 tcattttgcactctttatgtcagctgagcagaaggcagaggacacag
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46149712 47 - 159171411 TCATTTTACACTCTTCATGTCAGCAGATCAGAAGGCAAAGAACAGAG
i calJac3.chr5              C 0 I 7
s saiBol1.JH378271           1870768 47 +   3513951 TCATTTTACACTCTTCATGTCAGCAGATCAGAAAGGAAAGAACAGAG
i saiBol1.JH378271          C 0 I 7
s cebCap1.NW_016107543v1        6348 47 -   4077172 tcattttacactcttcatgtcagcagagcagaaggcaaagaagagag
i cebCap1.NW_016107543v1    C 0 I 7
s aotNan1.NW_018505111v1         140 47 -     94492 TCATTTTACACTCTTCATGTCAGCAGATCGGAGGGCAAAGAACAGAG
i aotNan1.NW_018505111v1    C 0 I 7
s canFam3.chr9              39587360 47 -  61074082 TCATTTTGTACTCCTCATGTTAGTAGACGAGCATGTAGAGAAAAGGG
i canFam3.chr9              C 0 I 7
e mm10.chr11                22147409 13865 - 122082543 T
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I

a score=711592.000000
s hg38.chr17_JH159148v1_alt    37105 72 +     88070 TTGGTGAGGGGTAATTATCCTGAAGGCGTAGAATGT--AGGAgaatgtatctgtagctcaggagattt-actgaa
s panTro5.chr17             16348157 72 +  83181570 TTGGTGAGGGGTAATTATCCTGAAGGCGTAGAATGT--AGGACAATGTATCTGTAGCTCAGGAGATTT-ACTGAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252698 72 +  83442489 TTGGTGAGGGGTAATTATCCTGAAGGCGTAGAATGT--AGGACaatgtatctgtagctcaggagattt-actgaa
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100047 72 +   4267968 TTGGTGAGGGGTAATTATCCTGAAGGCGTAGAATGT--AGGAgaatgtatctgtagctcaggagattt-actgaa
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084824 72 -   2193130 TTGGTGAGGGGTAATTATCCTGAAGGCATAGAATGT--AGGAgaatgtatctgtagctcaggagattt-actgaa
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30138464 72 -  77216781 TTGGTGAGGGGTAATTATTCTGAAGGCATAGAATGT--Agaagaatgtatctgtagctcgggagattt-actgaa
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28051293 72 -  80997621 TTGGTGAGGGGTAATTATTCTGAAGGCATAGAATGT--AGAAGAATGTATCTGTAGCTCGGGAGATTT-ACTGAA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2107913 72 +  10377808 TTGGTGAGGGGTAATTATTCTGAAGGCATAGAATGT--Agaagaatgtatctgtagctcgggagattt-actgaa
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992879 72 -   8458610 TTGGTGAGGGGTAATTATTCTGAAGGCATAGAATGT--AGGAgaatgtatccgtagctcgggagattt-actgaa
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64962789 72 +  75148670 TTGATGACGGGTAATTATCCTCAAGCCATATAGTGT--AGGAGAATGTATCTATACCTCAGAAGATTT-ACTTAG
i chlSab2.chr16             T 5378 C 0
s manLeu1.NW_012106252v1     2177227 72 +   4244037 TTGGTGAGGGGTAATTATTCTGAAAGCATAGAATGT--AGGAgaatgtatccgtagctcgggagattt-actgaa
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200221 72 +   4569836 ttggtgaggggtaattattctgaaggcatagaatgt--aggagaatgtatctgtagctcaggagattt-actgaa
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46149766 71 - 159171411 TTGGTGAGGAGTAATTATCCTGAAGTCGGAGAATGT--AGGAGAATCTATCTGTAGCTCA-GAGATTT-ACTGAA
i calJac3.chr5              I 7 C 0
s saiBol1.JH378271           1870822 72 +   3513951 ATGGTGAGGTGTAATTATCCTGAAGTCAGAGAATAT--AGGTGAATCTATCTGTAGCTCAGGGGATTT-ACTGAA
i saiBol1.JH378271          I 7 C 0
s cebCap1.NW_016107543v1        6402 72 -   4077172 ttggttaggagtaattatcctgaAGTCAAAGAACTT--AGGGGAATCTATCTGTAGCTCGGGAGATTT-ACTGAA
i cebCap1.NW_016107543v1    I 7 C 0
s aotNan1.NW_018505111v1         194 72 -     94492 TTGATGAGGAGCTATTATCCTGAAGTCGGAGAATGT--AGGGGATTCTCTCTGTAGCTCAGGAGATTT-ACTGAA
i aotNan1.NW_018505111v1    I 7 C 0
s canFam3.chr9              39587414 75 -  61074082 TCGGTGATGGATAATTATCATAAAAAGGTAGACTGCAGAGAGAAAGGTATCTGGAACTCAGGAGATTTCACTGGA
i canFam3.chr9              I 7 I 1462
e mm10.chr11                22147409 13865 - 122082543 T
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I

a score=1969197.000000
s hg38.chr17_JH159148v1_alt    37177 218 +     88070 tatgttaatttactagcactgccatgataaaccactacaaaccaagtggctgaaatttattttctcacagttctgaaggctagtagtctgaatttaaggtgttgacaaggttgtttttacctgaggactgttaggaaagcatctcttccaggtgtctctccttgacttgtaaatgcctgtcttctccatatgtctcttacatgatcttccttctagat
s panTro5.chr17             16348229 218 +  83181570 tatgttaatttactagcactgccatgataaaccactgcaaaccaagtggctgaaatttattttctcacagttctgaaggctagtagtctgaatttaaggtgttggcaaggttgtttttacctgaggactgttaggaaagcatctattccaggtgtctctccttgaattgtaaatgtctgtcttctccatgtgtctcttacatgatcttccttctagat
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252770 218 +  83442489 tatgttaatttactagcactgccatgataaaccactgcaaaccaagtggctgaaatttattttctcacagttctgaaggctagtagtctgaatttaaggtgttgacaaggttgtttttacctgaggactgttaggaaagcatctattccaggtgtctctccttgacttgtaaatgtctgtcttctccatgtgtctcttacatgatcttccttctagat
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100119 218 +   4267968 tatgttaatttactagcactgccatgataaaccactacaaagcaagtggctgaaatttattttctcacagttctgaaggctagtagtctgaatttaaggtgttgacaaggttgtttttacctgaggactgttaggaaagcatctattccaggtgtctctccttgacttgtaaatgtctgtcttctccatgtgtctcttacatgatcttccttctagat
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2084896 218 -   2193130 tatgttaatttactagcactgccatgataaaacactacaaaccaagtggctgaaatttattttctcacagttctgaaagctagtagtctgaatttaaggtgttgacaaggttgtttttacctgaggactgttaggaaagcatctattccaggtatctctgcttgacttgtaaatgtctgtcttctctatgtgtctgttacatgatcttccttccaaat
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30138536 218 -  77216781 tatgttaatttactagcactgccatgataaactactacaaaccaagtggcttaaatttattttcccacagttctgaagagtagcagcctgaatttaaggtgttgacaaggttgtttttacctgaggattgttagggaagtatctgttccaggtgtctgtccttgacttgtagatgtctgtcttctccacctgtctcttacatgatcttccttctagat
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28051365 218 -  80997621 tatgttaatttactagcactgccatgataaactactacaaaccaagtggcttaaatttattttcccacagttctgaagagtagcagcctgaatttaaggtgttgacaaggttgtttttacctgaggattgttagggaagtatctgttccaggtgtctgtccttgacttgtagatgtctgtcttctccacctgtctcttacatgatcttccttctagat
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2107985 218 +  10377808 tatgttaatttactagcactgccatgataaactactacaaaccaagtggcttaaatttattttcccacagttctgaagagtagcagcctgaatttaaggtgttgacaaggttgtttttacctgaggattgttagggaagtatctgttccaggtgtctgtccttgacttgtagatgtctgtcttctccacctgtctcttacatgatcttccttctagat
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1992951 218 -   8458610 tatgttaatttactagcactgccatgataaactactacaaaccaagtggcttaaatttattttcccacagttctgaagagtagcagcctgaatttaaggtgttgacaaggttgtttttacctgaggattgttagggaagtatctgttccaggtgtctgtccttgacttgtagatgtctgtcttctccacctgtctcttacatgatcttccttgtagat
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64962861 217 +  75148670 tatattgatttactaacactgccatgatgaattactgcaaaccaagt-gcttaaatttattttttcacagtcccaaaggctattagtccgaaattaaggtgttggtaatgttgttttgatctgaaggctgcgagggaagtatctgttcccagtctttctccttaacttgcagatgtctatcatttccatgtgtgtttcatataatttttctactatat
i chlSab2.chr16             C 0 I 131
s manLeu1.NW_012106252v1     2177299 218 +   4244037 tatgttaatttactagcactgccatgataaactactacaaaccaagtggcttaaatttattttcccacagttctgaagagtagcagcctgaatttaaggtgttgacaaggttgtttttacctgaggattgttagggaagtatctgttccaggtgtctgtccttgacttgtagatgtctgtcttctccacctgtctcttacatgatcttccttctagat
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200293 218 +   4569836 tatgttaatttactagcactgccatgataatctactacaaaccaagtggcttaaatttattttcccacagttctgaagagtagcagcctgaatttaaggtgttgacaaggttgtttttacctgaggattgttaggaaagtatctgttccaggtgtctctccttgacttgtagatatctgtcttctccacgtgtctcttacatgatcttccttctagat
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46149837 214 - 159171411 tatatgaatttac-agcactgccatgataaactactacaaaccaagtggcttaaatttattttctcatagttctgaaggccagcagtctgaatttcaggtgtggacaaggttgtttttgcctgaagagtgtaaggaatgtatctgctcctggtct-cctccttgatttgtagatgtgtgtcttctccatgagtctc--atgttagcttccttctagaa
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1870894 218 +   3513951 tatattaatttactagcactgccatgataaactactacaaaccaaatggcttaaactgattttctcatagttctgaaggctagcagtctcaattccaggtgtggacaaggctgtttttgcctgaagactgtaaggaaagtatctgttcctggtctccctccttgacttgtagatgtgtgtcttttccctgtgtctcttacgttagcttccttctagaa
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        6474 218 -   4077172 tatattaatttactagcactgccatgataaagtactacaaaccaagtggcttaaatttattttctcatagtgctgtaggctagcagtctgaatttcaggtgtggacaaggttgtttttgcctgaagactgtaaggaacgtatctgttcctggtctccctccttgacttgtagatgtgtgtcttctccatgtgtctcttatgttagcttccttctagaa
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1         266 212 -     94492 tatgttaatttactagcactgccatgataaactactacaaaccaagtggcttaaatgtattctctcatagttctgaaggccagcagtctggatttcaggtgtggacaaggttgtttttgcctgaagactgtaaggaaagtatccgtttcaggtgt-cctccttgacttgtagatgtgtgtcttctccatgtgtctc-----ttagcttccttcttgag
i aotNan1.NW_018505111v1    C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I

a score=1111630.000000
s hg38.chr17_JH159148v1_alt    37395 136 +     88070 gcacatggcgtctgaacttccccattctatacaggcatcagtcctattgaatcaggggcctaacttgttccaatatgacctgatcttaactaattatgttttcaatgacctcatttcaatatgaattttgggggac
s panTro5.chr17             16348447 136 +  83181570 gcacatggcgtctgaacttccccattctatacaggcatcagtcctattgaatcagaggcctaacttgtttcaatatgacctgatcttaactaattatgttttcaatgacctcatttcaatatgaattttgggggac
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16252988 136 +  83442489 gcacatggcgtctgaacttccccattctatacaggcatcagtcctattgaatcagaggcctaacttgtttcaatatgacctgatcttaactaattatgttttcaatgacctcatttcaatatgaattttgggggac
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100337 136 +   4267968 gcacgtggcgtctgatcttccccattctatacaggcatcagtcctattgaatcagaggcctaacttgttccaatatgacctgatcttaactaattatgttttcaatgacctcatttcaatatgaattttgggggac
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085114 136 -   2193130 gcacatggcgtctgaacagccccattctatacaggcatcagtcctattgaatcagaggtctatcttgttccgatatgacctgatcttaactaattacattttcaatgaccttatttgaatatgaattttgggggac
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30138754 135 -  77216781 gcacatggcctctgaacttccccattctatacaggcaccagtcctattgaatcagaggcctaacttattccaatatgacctgatcttaactaattaca-tttcagtgaccttatttgaatatgaattttgggggag
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28051583 135 -  80997621 gcacatggcctctgaacttccccattctatacaggcaccagtcctattgaatcagaggcctaacttattccaatatgacctgatcttaactaattaca-tttcagtgaccttatttgaatatgaattttgggggag
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2108203 135 +  10377808 gcacatggcctctgaacttccccattctatacaggcaccagtcctattgaatcagaggcctaacttattccaatatgacctgatcttaactaattaca-tttcagtgaccttatttgaatatgaattttgggggag
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1993169 135 -   8458610 gcacatggcctctgaacttccccattctatacaggcaccagtcctattgaatcagaggcctaacttattccaatatgacctgatcttaactaattaca-tttcagtgaccttatttgaatatgaattttgggggag
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2177517 135 +   4244037 gcacatggcctctgaacttccccattctatacaggcaccagtcctattgaatcagaggcctaacttattccaatatgacctgatcttaactaattaca-tttcagtgaccttatttgaatatgaattttgggggag
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200511 136 +   4569836 gcacacggcctctgaacttccccattctatacaggcatcagtcctattaaatcagaggcctaacttattccaatatgacctgatcttagctaattacattttcagtgaccttatttgaatatgaattttgggggag
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46150051 135 - 159171411 gcacactgcctctgaacttccccattctacac-ggcatcagtcatattgaatcagacccctaactgattccaatatgacctgatctttactaattacgttttcaatgactctatttgagtatgaatttgtggagac
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1871112 136 +   3513951 gcacactgcctctgaacttccccattctatacaggcatcagtcacattgaatcagaggcctaactgattccagtatgacctgatcttaactaattacattttcagtgactctatttGAGTATGAATTTGTGGAGAC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        6692 136 -   4077172 gcacactgcctctgaacatcctcattctagacaagcatcagtcatattgaatcagaggcctaactgattccaatatgatctgatcttaactaattacattttcaatgactctatttgagtatgaatttgtggagac
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1         478 136 -     94492 gcacactgcctctggacttccccattctatacaggtatcagtcatattgaatcagaggcctaactgattccagtatgtcctgatcttaactaattacattttcaatgactctatttGAGTATGAATTTGTGGAGAC
i aotNan1.NW_018505111v1    C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e chlSab2.chr16             64963078 131 +  75148670 I

a score=1237253.000000
s hg38.chr17_JH159148v1_alt    37531 140 +     88070 tc-attcaacccataacactggagaatctcatactgtgtccatgcccagagataaccacaagtgagtgaaaacagcaatcacagtggacagtggtacagtaactagtggctcagaccctttgggcaggaacatctgggtta
s panTro5.chr17             16348583 140 +  83181570 tc-attcaacccataacaCTGGAGAATCTCATACTGTGTCCATGCCCAGTGATAACCACAAGTGAGTGAAAACAGCAATCACAGTGGACAATGGTACAGTAAGTAGTGGCTCAGACCCTTTGGGCAGGAACATCTGGGTTA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16253124 140 +  83442489 tc-attcaacccataacactggagaatctcatactgtgtccatgcccagtgataaccacaagtgagtgaaaacagcaatcacagtggacaatggtacagtaagtagtggctcagaccctttgggcaggaacatctgggtta
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100473 140 +   4267968 tc-attcaacccataacactggagaatctcatactgtgtccatgcccagtgataaccacaagtgagtgaaaacagcaatcacagtggacaacggtacagtaactagtggctcagaccctttgggcaggaacatctgggtta
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085250 140 -   2193130 ac-attcaacccataacactggagaatctcatagcgtgtccatgctcagtgataaccacaaatgagtgaaaccagcaatcacagcggacaatggtacagtaactagcggctcagaccctttgggcaggaacatctgggtta
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30138889 140 -  77216781 ac-attcaacccatagtactggagaatctcgtggtgtgtccatgctcagtgataaccacacaggagtgaaaacagcaatcacagtggacaatggtacagtaactagtggctcagaccctttgggcaggaacgtctgggtta
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28051718 140 -  80997621 ac-attcaacccatagtactggagaatctcgtggtgtgtccatgctcagtgataaccacacaggagtgaaaacagcaatcacagtggacaatggtacagtaactagtggctcagaccctttgggcaggaacgtctgggtta
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2108338 140 +  10377808 ac-attcaacccatagtactggagaatctcgtggtgtgtccatgctcagtgataaccacacaggagtgaaaacagcaatcacagtggacaatggtacagtaactagtggctcagaccctttgggcaggaacgtctgggtta
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1993304 140 -   8458610 ac-attcaacccataacactggagaatctcgtggtgtgtccatgctcagtgataaccacacaggagtgaaaacagcaatcacagtggataatggtacagtaactagcggctcagaccctttgggcaggaacgtctgggtta
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64963209 140 +  75148670 TG-AATTAACCCATAACACTGCAGAatctcatagtgtgtccatgcccagtgataaccacagatgagtaagaacagcaatcacaggggacagtggtatagtaactagaggctcagaccctttaggaaggaagttctgagcta
i chlSab2.chr16             I 131 I 59
s manLeu1.NW_012106252v1     2177652 140 +   4244037 ac-attcaacccataacactggagaatctcgtggtgtgtccatgctcagtgataaccacacaggagtgaaaacagcaatcacagtggataatggtacagtaactagtggctcagaccctttgggcaggaacgtctgggtta
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200647 140 +   4569836 ac-attcaacccataacactggagaatctcgtggtgtgtccatgctcagtgataaccacacatgagtgaaaatggcaatcacagcggacaatggtacagtaactagcggctcagaccctttgggcaggaacgtctgggtta
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46150186 141 - 159171411 acaagtcagcccataacaCTGAAGAATCTCATAGTGTATCCGTGCCTGCTGATAATCACCGATGAGTGAAAAGAGCAATCACAGCAGAGAATGATACAGTCACTAGCAGCTCAGACCTTTCAGAGAGGAAGCTCTGGTTTA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1871248 140 +   3513951 AC-AGTCAACCCATAACACTGAAGAATCTCATAGTGTGTCCACGCCCGGTGATAACCACCAGTGACTGAAGACAGCAATCACAGTGGACAATGGCACAGTAACTAGCAGCTCAGCCCTTTCAGACAGGAAGGTCTGGTTTA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        6828 140 -   4077172 acaagtcaacccataacaCTGATGAATCTCCTTGTGTGTCCATGCCCGGCGATAACCACCAATGAGTGAAAACAGCAACCACA-TGGACAATGGTACAGTACCAAGCAGCTCAGACATTTCAGGAAGGAAGTTCTGGTTTA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1         614 141 -     94492 ACAAGTCAACCCCTAAGACTGAAGACTCTCATAGTGTGTCCATGCCCGGTGATAACCACCCACGAGTGAAAACGGCAATCACGGTGGACAATGGTACAGTAACTAGCAGCTCAGACCTTTCAGACAGGTAGGTCTGGTTTA
i aotNan1.NW_018505111v1    C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I

a score=464829.000000
s hg38.chr17_JH159148v1_alt    37671 59 +     88070 ctccttccggaaattatctagagtagtaaaagttctggaaagtggtgaaggaactatag
s panTro5.chr17             16348723 59 +  83181570 CTCCTTCCGGAAATTATCTAGAGTAGCAAAAGTTCTGGAAAGTGGTGAAGGAACTATAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16253264 59 +  83442489 ctccttccggaaattatctagagtagcaaaatttctggaaagtggtgaaggaactatag
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100613 59 +   4267968 ctccttccggaaattatctagagtagcaaaagttctggaaagtggtgaaggaactatag
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085390 59 -   2193130 ctccttctggaaattatctagagcagcaaaagtgctggacagtggtgaaggaagtatag
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30139029 59 -  77216781 ctccttcaggaaattatctagagcaacaaaagtgctggacagtggtgaaggaaatatag
i rheMac8.chr16             C 0 I 1
s macFas5.chr16             28051858 59 -  80997621 ctccttcaggaaattatctagagcaacaaaagtgctggacagtggtgaaggaaatatag
i macFas5.chr16             C 0 I 1
s macNem1.NW_012014910v1     2108478 59 +  10377808 ctccttcaggaaattatctagagcaacaaaagtgctggacagtggtgaaggaaatatag
i macNem1.NW_012014910v1    C 0 I 1
s cerAty1.NW_012006043v1     1993444 59 -   8458610 ctccttcaggaaattatctagagcaacaaaagtgctgggcagtggtgaaggaaatatag
i cerAty1.NW_012006043v1    C 0 I 1
s manLeu1.NW_012106252v1     2177792 59 +   4244037 ctccttcaggaaattatctagagcaacaaaagtgctggacagtggtgaaggaaatatag
i manLeu1.NW_012106252v1    C 0 I 1
s colAng1.NW_012122154v1     2200787 59 +   4569836 ctccttcaggaaattatctagagcgacaaaagtgctggacagtggtgagggaaatatag
i colAng1.NW_012122154v1    C 0 I 1
s calJac3.chr5              46150327 59 - 159171411 CTCCTTCAGGAAAGTATGTAGAGCAACAAAAGTGCTGGACAGTGGTGAATGAAGTATCG
i calJac3.chr5              C 0 I 1
s saiBol1.JH378271           1871388 59 +   3513951 CTCCTTCAGGAAAATACATAGGGCAGTGAAACTGCTGGACAGTGGTGACAGAAGTATAG
i saiBol1.JH378271          C 0 I 1
s cebCap1.NW_016107543v1        6968 59 -   4077172 CTCCTTCAGGAAAGTACATAGTGCAACAAAGGTGCTGGACAGTGGTGAAAGAAGTATAG
i cebCap1.NW_016107543v1    C 0 I 1
s aotNan1.NW_018505111v1         755 58 -     94492 CTCGTTCAGGAAAGTATCTAGAGCAACAAAA-TGCTGGACAGTGATGAAGGAAGTATAG
i aotNan1.NW_018505111v1    C 0 I 1
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e chlSab2.chr16             64963349 59 +  75148670 I

a score=137183.000000
s hg38.chr17_JH159148v1_alt    37730 17 +     88070 acttttgataattaatg
s panTro5.chr17             16348782 17 +  83181570 ACTTTTGATAATTAATG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16253323 17 +  83442489 acttttgataattaatg
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100672 17 +   4267968 acttttgataattaatg
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085449 17 -   2193130 acttttgataattaatg
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30139089 17 -  77216781 aCTTTCGATAATTAATG
i rheMac8.chr16             I 1 I 31425
s macFas5.chr16             28051918 17 -  80997621 actttcgataattaatg
i macFas5.chr16             I 1 C 0
s macNem1.NW_012014910v1     2108538 17 +  10377808 actttcgataattaatg
i macNem1.NW_012014910v1    I 1 C 0
s cerAty1.NW_012006043v1     1993504 17 -   8458610 acttttgataattaatg
i cerAty1.NW_012006043v1    I 1 C 0
s chlSab2.chr16             64963408 17 +  75148670 actggtaataattaatg
i chlSab2.chr16             I 59 C 0
s manLeu1.NW_012106252v1     2177852 17 +   4244037 acttttgataattaatg
i manLeu1.NW_012106252v1    I 1 C 0
s colAng1.NW_012122154v1     2200847 17 +   4569836 acttttgataattaatg
i colAng1.NW_012122154v1    I 1 C 0
s calJac3.chr5              46150387 17 - 159171411 ACTTGTGGTAATTTGTG
i calJac3.chr5              I 1 C 0
s saiBol1.JH378271           1871448 17 +   3513951 ACTTGTGGTGGCTTGTG
i saiBol1.JH378271          I 1 C 0
s cebCap1.NW_016107543v1        7028 17 -   4077172 AGTTGTGGTAATTTGTG
i cebCap1.NW_016107543v1    I 1 C 0
s aotNan1.NW_018505111v1         814 17 -     94492 ACTTGTGGTAATTTGTG
i aotNan1.NW_018505111v1    I 1 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I

a score=597971.000000
s hg38.chr17_JH159148v1_alt    37747 73 +     88070 gagattatggctgtcaggtgcaccctattatagcagcagtaactgttgcttgttccattggccttcattttAC
s panTro5.chr17             16348799 73 +  83181570 GAGATTATGACTGTCAGGTGCACCCTATTATAGCAGCAGTAACTGTTACTTGTTTCATTGGCCTTCATTTTAC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16253340 73 +  83442489 gagattatgactgtcaggtgcaccctattatagcagcagtaactgttgcttgttccattggccttcattttAC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100689 73 +   4267968 gagattatgactgtcaggtgcaccctattatagcagcagtaactgttgcttgttccactggccttcattttAC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085466 73 -   2193130 gagattatgactgtcaggtgCATCCTATTATAGCAGCAGTAACTGTTGCTTGTTCCATTGGGCTTCATTTTAC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28051935 73 -  80997621 gagattatgactgtcaggtgtaccttattatagcagcagtaactgttgcttgttccattggccttcattttAC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2108555 73 +  10377808 gagattatgactgtcaggtgtaccttattatagcagcagtaactgttgcttgttccattggccttcattttAC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1993521 73 -   8458610 gagattatgactgtcaggtgtaccttattatagcagcagtaactgttgcttgttccattggccttcattttAC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64963425 73 +  75148670 gagattgtgaatctcaAGTGCACTGTATTACAGCAGCAGTAAGTGTAACTTATTTCATTGGCCTTCATTTTAC
i chlSab2.chr16             C 0 I 33
s manLeu1.NW_012106252v1     2177869 73 +   4244037 gagattatgactgtcaggtgtACCTTATTATAGCAGCAGTAACAGTTGCTTGTTCCATTGGCTTTCATTTTAC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200864 73 +   4569836 gagattatgactgtcagatgtaccttattatagcaacagtaactgttgcttgttccattggccttcattttAC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46150404 73 - 159171411 GAGATGATGAGTCTCAGGTGCACCTTATTACAGTAGCAGCACCTGTTGCTTGTTTCATTGGCCTTCATTTTAT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1871465 73 +   3513951 GAGATGATGAGTCTCGGGTGCACCTTACTGTAGTGGCAGTAACTGTTCCTTGTTCCATTGGCCTTCATTTTAT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        7045 73 -   4077172 GAGATGATGAGTCTCAGGTGCACCTTATTATAGTAGCCGTAACTGTTCCTTGTTCCATTGGCCTTCATTTTAT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1         831 73 -     94492 GAGATTTTGAGTCTCAGGTGCCCTTTATTATAGTAGCAGTAACTGTGGCTTGTTCCATTGGCCTTCATTTTAT
i aotNan1.NW_018505111v1    C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=233224.000000
s hg38.chr17_JH159148v1_alt    37820 38 +     88070 ATATCTCTCCCCCTCctttcttt-----gcttcttaatttc--------------------t-c
s panTro5.chr17             16348872 38 +  83181570 ATATCTCTCCCcctcctttcttt-----gcttcttaatttc--------------------t-c
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16253413 38 +  83442489 ATATCTCTCCCCCTCCTTTCTTT-----GCTTCTTAATTTC--------------------t-c
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100762 38 +   4267968 ATATCTCTCCCcttcctttcttt-----gcttcttaatttc--------------------t-c
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085539 58 -   2193130 ATATGTCTCCCcctcctttcttt-----gcttcttagtttctcctccctcccttccttcctt-c
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28052008 38 -  80997621 ATATCTCTCCCCCTCCTTTCTTT-----GCTTTTTAatttc--------------------t-c
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2108628 38 +  10377808 ATATCTCTCCCCCTCCTTTCTTT-----GCTTTTTAATTTC--------------------t-c
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1993594 38 -   8458610 ATATCTCTCCCCCTCctttcttt-----gctttttaatttc--------------------t-c
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2177942 38 +   4244037 ATATCTCTCCCCCTCctttcttt-----gctttttaatttc--------------------t-c
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200937 38 +   4569836 ATATCTCTCCccctcctttcttc-----gctttttaatttc--------------------t-c
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46150477 41 - 159171411 ATAT--CTCCCCCTCCTTTCTTTCCATTCCTTCTTAGTTTC--------------------T-c
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1871538 44 +   3513951 ATATCACTCCCCCTCCTTTCTTCTCTTAGCTTCTTAATTTC--------------------TAc
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        7118 44 -   4077172 ACATCTCTCCCCCTCCTTTCTTTTCTTAGGTTTTCAGttcc--------------------ttc
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1         904 43 -     94492 Atctctctccctttcctctctttccttagcttcttagtttt--------------------t-c
i aotNan1.NW_018505111v1    C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e chlSab2.chr16             64963498 33 +  75148670 I
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=205565.000000
s hg38.chr17_JH159148v1_alt    37858 34 +     88070 cttccttccttccttctttccttccttccttcct
s panTro5.chr17             16348910 34 +  83181570 cttccttccttccttctttccttccttccttcct
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16253451 34 +  83442489 cttccttccttccttctttccttccttccttcct
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100800 26 +   4267968 cttccttcc--------ttctttccttccttcct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085597 34 -   2193130 cttccttccttccttccttccttccttccttcct
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28052046 34 -  80997621 cttccttccttccctccctccttccttccctccc
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2108666 34 +  10377808 cttccttccttccctccctccttccttccctccc
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1993632 34 -   8458610 cttccttccttccctccctccttccttccctccc
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64963531 34 +  75148670 ctttcttccttctttctttcttttcttttctcct
i chlSab2.chr16             I 33 C 0
s manLeu1.NW_012106252v1     2177980 34 +   4244037 cttccttccctccctccctccttccttccctccc
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2200975 34 +   4569836 cttccttccttccctccctccttccctctctcct
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46150518 34 - 159171411 ctccctccctccctccctccctccctccctccct
i calJac3.chr5              C 0 I 952
s saiBol1.JH378271           1871582 30 +   3513951 ctacctcccttcttcccttcttccctttct----
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        7162 26 -   4077172 cttcctccctccctccctccctccct--------
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1         947 34 -     94492 cctcatcccttctttccttccttcctttcttcca
i aotNan1.NW_018505111v1    C 0 I 4
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=55837.000000
s hg38.chr17_JH159148v1_alt    37892 14 +     88070 ccctccctccctct
s panTro5.chr17             16348944 14 +  83181570 tcctccctccctct
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16253485 14 +  83442489 tcctCCCTCCCTCT
i panPan2.chr17             C 0 M 318
s gorGor5.CYUI01015385v1     4100826 14 +   4267968 ccctccctccctct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085631 14 -   2193130 tccttcctccctcc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28052080 14 -  80997621 tcccttctttcttt
i macFas5.chr16             C 0 I 2
s macNem1.NW_012014910v1     2108700 14 +  10377808 tcccttctttcttt
i macNem1.NW_012014910v1    C 0 I 2
s cerAty1.NW_012006043v1     1993666 13 -   8458610 t-ccttccttcctt
i cerAty1.NW_012006043v1    C 0 I 2
s chlSab2.chr16             64963565 14 +  75148670 ttctttctttcttt
i chlSab2.chr16             C 0 I 2
s manLeu1.NW_012106252v1     2178014 14 +   4244037 tccctccctccctc
i manLeu1.NW_012106252v1    C 0 I 2
s colAng1.NW_012122154v1     2201009 14 +   4569836 ttctttctttcttt
i colAng1.NW_012122154v1    C 0 I 2
s saiBol1.JH378271           1871612 14 +   3513951 cccttccttctctt
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        7188 14 -   4077172 cccttccttccttc
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1         985 14 -     94492 tccatccttctctc
i aotNan1.NW_018505111v1    I 4 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46150552 952 - 159171411 I
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=12730.000000
s hg38.chr17_JH159148v1_alt    37906 6 +     88070 ctctct
s panTro5.chr17             16348958 6 +  83181570 ctctct
i panTro5.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100840 6 +   4267968 ctctct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085645 6 -   2193130 ctctct
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28052096 6 -  80997621 ttctct
i macFas5.chr16             I 2 C 0
s macNem1.NW_012014910v1     2108716 6 +  10377808 ctttct
i macNem1.NW_012014910v1    I 2 C 0
s cerAty1.NW_012006043v1     1993681 6 -   8458610 ctccct
i cerAty1.NW_012006043v1    I 2 C 0
s chlSab2.chr16             64963581 6 +  75148670 ttcttt
i chlSab2.chr16             I 2 C 0
s manLeu1.NW_012106252v1     2178030 6 +   4244037 tccctc
i manLeu1.NW_012106252v1    I 2 C 0
s colAng1.NW_012122154v1     2201025 6 +   4569836 ttcttt
i colAng1.NW_012122154v1    I 2 C 0
s saiBol1.JH378271           1871626 1 +   3513951 c-----
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        7202 6 -   4077172 cttcct
i cebCap1.NW_016107543v1    C 0 I 61
s aotNan1.NW_018505111v1         999 6 -     94492 ctgcct
i aotNan1.NW_018505111v1    C 0 I 3
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46150552 952 - 159171411 I
e rheMac8.chr16             30139106 31425 -  77216781 I
e panPan2.chr17             16253499 318 +  83442489 M

a score=207.000000
s hg38.chr17_JH159148v1_alt    37912  6 +     88070 ttctc------------------------t
s panTro5.chr17             16348964  6 +  83181570 ttctc------------------------t
i panTro5.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100846  6 +   4267968 ttctc------------------------t
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085651  6 -   2193130 ctctc------------------------t
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28052102 30 -  80997621 ctctctctctctttctttctctttctttct
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2108722  1 +  10377808 -----------------------------t
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1993687 19 -   8458610 ccctccctccctccctcc-----------t
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64963587  6 +  75148670 ctttc------------------------t
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2178036  6 +   4244037 cctcc------------------------t
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2201031  6 +   4569836 ctttc------------------------t
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1871627  6 +   3513951 tttcc------------------------t
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018505111v1        1008  6 -     94492 ttctc------------------------t
i aotNan1.NW_018505111v1    I 3 I 78
e mm10.chr11                22147409 13865 - 122082543 T
e cebCap1.NW_016107543v1        7208 61 -   4077172 I
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46150552 952 - 159171411 I
e rheMac8.chr16             30139106 31425 -  77216781 I
e panPan2.chr17             16253499 318 +  83442489 M

a score=43292.000000
s hg38.chr17_JH159148v1_alt    37918 13 +     88070 ttctttctttctt
s panTro5.chr17             16348970  5 +  83181570 ttctt--------
i panTro5.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100852 13 +   4267968 ttctttctttttc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085657 13 -   2193130 ttctttctttctc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28052132 13 -  80997621 ttctttctttctt
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2108723 13 +  10377808 ttctttctttctt
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1993706 13 -   8458610 ttctttctttctt
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64963593 13 +  75148670 ttctttctttctt
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2178042 13 +   4244037 ttctttctttctt
i manLeu1.NW_012106252v1    C 0 I 21584
s colAng1.NW_012122154v1     2201037 13 +   4569836 ttctttctttctt
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1871633 13 +   3513951 ccctctcttcttc
i saiBol1.JH378271          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e aotNan1.NW_018505111v1        1014 78 -     94492 I
e cebCap1.NW_016107543v1        7208 61 -   4077172 I
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46150552 952 - 159171411 I
e rheMac8.chr16             30139106 31425 -  77216781 I
e panPan2.chr17             16253499 318 +  83442489 M

a score=11987.000000
s hg38.chr17_JH159148v1_alt    37931 14 +     88070 tttc------------------------tttttctttc
s panTro5.chr17             16348975  4 +  83181570 ----------------------------------tttc
i panTro5.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100865  6 +   4267968 tt--------------------------------tttc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085670 38 -   2193130 tctctccttccttccttaattccttccttctttcttcc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28052145 14 -  80997621 ------------------------tctttctttctttc
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2108736 14 +  10377808 ------------------------tctttctttctttc
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1993719 14 -   8458610 ------------------------tctttctttctttc
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64963606 14 +  75148670 ------------------------tctttctttctttc
i chlSab2.chr16             C 0 C 0
s colAng1.NW_012122154v1     2201050 14 +   4569836 ------------------------tctttctttctttc
i colAng1.NW_012122154v1    C 0 I 81
s saiBol1.JH378271           1871646 14 +   3513951 ------------------------cttccctttcttcc
i saiBol1.JH378271          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e aotNan1.NW_018505111v1        1014 78 -     94492 I
e cebCap1.NW_016107543v1        7208 61 -   4077172 I
e canFam3.chr9              39587489 1462 -  61074082 I
e manLeu1.NW_012106252v1     2178055 21584 +   4244037 I
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46150552 952 - 159171411 I
e rheMac8.chr16             30139106 31425 -  77216781 I
e panPan2.chr17             16253499 318 +  83442489 M

a score=35424.000000
s hg38.chr17_JH159148v1_alt    37945 27 +     88070 ----tttctttc--tcttt-----------------------cttctttttctctc
s panTro5.chr17             16348979 27 +  83181570 ----tttctttc--tcttt-----------------------cttctttttctctc
i panTro5.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100871 27 +   4267968 ----tttctttc--tcttt-----------------------cttctttttctctc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085708 50 -   2193130 ----tttctttc--tttttttcttccttccttccttcctttccctttctttctttc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28052159 24 -  80997621 ----tttctttctttcttt-----------------------ctttcttt-----c
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2108750 24 +  10377808 ----tttctttctttcttt-----------------------ctttcttt-----c
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1993733 29 -   8458610 ----tttctttctttcttt-----------------------ctttctttccctcc
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64963620 29 +  75148670 ----tttctttctttcttt-----------------------tctttttttctctc
i chlSab2.chr16             C 0 C 0
s saiBol1.JH378271           1871660 28 +   3513951 ctcctttcttccttccctt-----------------------cctcctttc-----
i saiBol1.JH378271          C 0 I 3
e mm10.chr11                22147409 13865 - 122082543 T
e aotNan1.NW_018505111v1        1014 78 -     94492 I
e cebCap1.NW_016107543v1        7208 61 -   4077172 I
e canFam3.chr9              39587489 1462 -  61074082 I
e manLeu1.NW_012106252v1     2178055 21584 +   4244037 I
e dasNov3.JH570468            523978 66269 -    852752 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46150552 952 - 159171411 I
e colAng1.NW_012122154v1     2201064 81 +   4569836 I
e rheMac8.chr16             30139106 31425 -  77216781 I
e panPan2.chr17             16253499 318 +  83442489 M

a score=2978.000000
s hg38.chr17_JH159148v1_alt    37972 2 +     88070 tc
s panTro5.chr17             16349006 2 +  83181570 tc
i panTro5.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100898 2 +   4267968 tc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085758 2 -   2193130 tt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28052183 2 -  80997621 tt
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2108774 2 +  10377808 tt
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1993762 2 -   8458610 tt
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64963649 2 +  75148670 ta
i chlSab2.chr16             C 0 C 0
s dasNov3.JH570468            590247 2 -    852752 TC
i dasNov3.JH570468          I 66269 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e aotNan1.NW_018505111v1        1014 78 -     94492 I
e cebCap1.NW_016107543v1        7208 61 -   4077172 I
e canFam3.chr9              39587489 1462 -  61074082 I
e manLeu1.NW_012106252v1     2178055 21584 +   4244037 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e saiBol1.JH378271           1871688 3 +   3513951 I
e calJac3.chr5              46150552 952 - 159171411 I
e colAng1.NW_012122154v1     2201064 81 +   4569836 I
e rheMac8.chr16             30139106 31425 -  77216781 I
e panPan2.chr17             16253499 318 +  83442489 M

a score=11533.000000
s hg38.chr17_JH159148v1_alt    37974 18 +     88070 tccttcct-----------------------------------------gccttccttc
s panTro5.chr17             16349008 18 +  83181570 tccttcct-----------------------------------------gccttccttc
i panTro5.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100900 18 +   4267968 tccttcct-----------------------------------------gccttccttc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085760 18 -   2193130 tctttctt-----------------------------------------tctttctttc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28052185 59 -  80997621 tctttctttctctttctttcttttttctttctttctttctttctttctttctttctttc
i macFas5.chr16             C 0 I 24
s macNem1.NW_012014910v1     2108776  8 +  10377808 tctttctt---------------------------------------------------
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1993764  8 -   8458610 tctttctt---------------------------------------------------
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64963651 18 +  75148670 tctttctt-----------------------------------------tctttctttc
i chlSab2.chr16             C 0 I 22
s saiBol1.JH378271           1871691 16 +   3513951 tactttct-----------------------------------------ttctttct--
i saiBol1.JH378271          I 3 C 0
s cebCap1.NW_016107543v1        7269 18 -   4077172 tcctttct-----------------------------------------tcctcccttc
i cebCap1.NW_016107543v1    I 61 C 0
s dasNov3.JH570468            590249 17 -    852752 TCTTGCCT-----------------------------------------GCCTGCCTT-
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e aotNan1.NW_018505111v1        1014 78 -     94492 I
e canFam3.chr9              39587489 1462 -  61074082 I
e manLeu1.NW_012106252v1     2178055 21584 +   4244037 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46150552 952 - 159171411 I
e colAng1.NW_012122154v1     2201064 81 +   4569836 I
e rheMac8.chr16             30139106 31425 -  77216781 I
e panPan2.chr17             16253499 318 +  83442489 M

a score=910.000000
s hg38.chr17_JH159148v1_alt    37992 1 +     88070 t
s panTro5.chr17             16349026 1 +  83181570 t
i panTro5.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100918 1 +   4267968 t
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085778 1 -   2193130 t
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cebCap1.NW_016107543v1        7287 1 -   4077172 t
i cebCap1.NW_016107543v1    C 0 I 3
e mm10.chr11                22147409 13865 - 122082543 T
e aotNan1.NW_018505111v1        1014 78 -     94492 I
e canFam3.chr9              39587489 1462 -  61074082 I
e manLeu1.NW_012106252v1     2178055 21584 +   4244037 I
e dasNov3.JH570468            590266 0 -    852752 C
e otoGar3.GL873537          22862060 5348 +  28711273 I
e saiBol1.JH378271           1871707 0 +   3513951 C
e calJac3.chr5              46150552 952 - 159171411 I
e colAng1.NW_012122154v1     2201064 81 +   4569836 I
e chlSab2.chr16             64963669 22 +  75148670 I
e cerAty1.NW_012006043v1     1993772 0 -   8458610 C
e macNem1.NW_012014910v1     2108784 0 +  10377808 C
e macFas5.chr16             28052244 24 -  80997621 I
e rheMac8.chr16             30139106 31425 -  77216781 I
e panPan2.chr17             16253499 318 +  83442489 M

a score=24733.000000
s hg38.chr17_JH159148v1_alt    37993 20 +     88070 ctc--------------tctctctttctttcttt
s panTro5.chr17             16349027 10 +  83181570 c------------------------tctttcttt
i panTro5.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100919 10 +   4267968 c------------------------tctctcttt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085779 34 -   2193130 ttctttctttctttctttctttctttctttcttt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28052268 20 -  80997621 -------------tctttctttcttt-tctcttt
i macFas5.chr16             I 24 I 3
s macNem1.NW_012014910v1     2108784 20 +  10377808 -------------tctttctttcttt-tctcttt
i macNem1.NW_012014910v1    C 0 I 3
s cerAty1.NW_012006043v1     1993772 21 -   8458610 -------------tctttctttctttctttcttt
i cerAty1.NW_012006043v1    C 0 I 167
s chlSab2.chr16             64963691 21 +  75148670 -------------tctttctttctttctttcttt
i chlSab2.chr16             I 22 I 14
s colAng1.NW_012122154v1     2201145 20 +   4569836 -------------tctttctttctttctttctt-
i colAng1.NW_012122154v1    I 81 C 0
s saiBol1.JH378271           1871707 20 +   3513951 --------------ctttctttctttctttcttt
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        7291 20 -   4077172 --------------ccttcgtcctttcctccctc
i cebCap1.NW_016107543v1    I 3 C 0
s aotNan1.NW_018505111v1        1092 16 -     94492 ------------------ctttctttcttttctt
i aotNan1.NW_018505111v1    I 78 C 0
s dasNov3.JH570468            590266 17 -    852752 --------------TGTGcctgccttccttc---
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e manLeu1.NW_012106252v1     2178055 21584 +   4244037 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46150552 952 - 159171411 I
e rheMac8.chr16             30139106 31425 -  77216781 I
e panPan2.chr17             16253499 318 +  83442489 M

a score=120571.000000
s hg38.chr17_JH159148v1_alt    38013 26 +     88070 ctttcctcctt---cctttcttccttcca
s panTro5.chr17             16349037 26 +  83181570 ctttcctcctt---cctttcttccttcca
i panTro5.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100929 26 +   4267968 ctttcctcctt---cctttcttccttcca
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085813 26 -   2193130 ctcccctcctt---cctttcttccttcca
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28052291 26 -  80997621 ctttcctcctt---cctttcttccttcca
i macFas5.chr16             I 3 C 0
s macNem1.NW_012014910v1     2108807 26 +  10377808 ctttcctcctt---cctttcttccttcca
i macNem1.NW_012014910v1    I 3 C 0
s cerAty1.NW_012006043v1     1993960 26 -   8458610 ctttcctcctt---cctttcttccttcca
i cerAty1.NW_012006043v1    I 167 C 0
s chlSab2.chr16             64963726 26 +  75148670 ccttccttttt---ctttctttctttctt
i chlSab2.chr16             I 14 C 0
s colAng1.NW_012122154v1     2201165 26 +   4569836 ctttcctcctt---cctttcttccttcca
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1871727 26 +   3513951 ctttctttctt---tctttctttctttct
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        7311 28 -   4077172 ctttctttcttcc-tctttctttctttct
i cebCap1.NW_016107543v1    C 0 I 1
s aotNan1.NW_018505111v1        1108 29 -     94492 ctttctttcctctatctttgtttccttct
i aotNan1.NW_018505111v1    C 0 I 1
s dasNov3.JH570468            590283 26 -    852752 attccttctgt---ccttccttctcttcc
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e manLeu1.NW_012106252v1     2178055 21584 +   4244037 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e calJac3.chr5              46150552 952 - 159171411 I
e rheMac8.chr16             30139106 31425 -  77216781 I
e panPan2.chr17             16253499 318 +  83442489 M

a score=49753.000000
s hg38.chr17_JH159148v1_alt    38039 8 +     88070 tccctcct
s panTro5.chr17             16349063 8 +  83181570 tccctcct
i panTro5.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100955 8 +   4267968 tccctcct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085839 8 -   2193130 tccctcct
i nomLeu3.chrUn_GL397460_1  C 0 I 24
s macFas5.chr16             28052317 8 -  80997621 tccctcct
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2108833 8 +  10377808 tccctcct
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1993986 8 -   8458610 tccctcct
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64963752 8 +  75148670 tctttcct
i chlSab2.chr16             C 0 C 0
s colAng1.NW_012122154v1     2201191 8 +   4569836 tctctcct
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46151504 8 - 159171411 ttccttcc
i calJac3.chr5              I 952 C 0
s saiBol1.JH378271           1871753 8 +   3513951 ttctttct
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        7340 8 -   4077172 ttcctcct
i cebCap1.NW_016107543v1    I 1 C 0
s aotNan1.NW_018505111v1        1138 8 -     94492 tcccgccc
i aotNan1.NW_018505111v1    I 1 C 0
s dasNov3.JH570468            590309 8 -    852752 tctctcct
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e manLeu1.NW_012106252v1     2178055 21584 +   4244037 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e rheMac8.chr16             30139106 31425 -  77216781 I
e panPan2.chr17             16253499 318 +  83442489 M

a score=240950.000000
s hg38.chr17_JH159148v1_alt    38047 36 +     88070 ttccttcttc--cttccctctctccttccc--tcctttct
s panTro5.chr17             16349071 36 +  83181570 ttccttcttc--cttccctctctccttccc--tcctttct
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16253819 35 +  83442489 ttccttcttc--ctt-cctctctccttccc--tcctttct
i panPan2.chr17             M 318 C 0
s gorGor5.CYUI01015385v1     4100963 35 +   4267968 ttccttcttc--cttccctct-tccttcct--tcctttct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085871 36 -   2193130 ttccttcttc--cttccctctctccttccc--tccttcct
i nomLeu3.chrUn_GL397460_1  I 24 C 0
s macFas5.chr16             28052325 36 -  80997621 ttccttcttc--cttccttctctccttccc--tcctttct
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2108841 36 +  10377808 ttccttcttc--cttccttctctccttccc--tcctttct
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1993994 36 -   8458610 ttccttcttc--cttccttctctccttccc--tcctttct
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64963760 38 +  75148670 tccttccttc--cttccttctttctttctctttcctttct
i chlSab2.chr16             C 0 C 0
s colAng1.NW_012122154v1     2201199 36 +   4569836 ttccttcttc--cttccctctctccttccc--tcctttct
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46151512 36 - 159171411 ttcctccctc--cctccctccctccccccc--tccctttg
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1871761 36 +   3513951 ttctttcttt--ctttctttccttctgtcc--ttccttca
i saiBol1.JH378271          C 0 I 1
s cebCap1.NW_016107543v1        7348 36 -   4077172 tccctccctc--ctatcctccctccttccc--tcctttta
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        1146 36 -     94492 tccctccttc--cctccatttctccctccc--tccctcct
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            590317 38 -    852752 tacctccttcctcttccctccctcctttct--ttctttct
i dasNov3.JH570468          C 0 I 38825
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e manLeu1.NW_012106252v1     2178055 21584 +   4244037 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=1769820.000000
s hg38.chr17_JH159148v1_alt    38083 267 +     88070 tccttccccccttctttccttc---------------------cttcctttcttctc--------tctttctttcatttttcc-------------------------------------------------atctttcttcttcctctcattt--tctgtttttcctctttctcctcttcctttcctcctcctcttccttc-----------------ttCTAGAGTTTGTGGCTGCCCACCACACTTAAGAAGCAAA-------------------------------GATTGGGTCTGTGTGGAGCAAATGGTAGATTGTAGATAGGATTTCCTTATCCCATTCCTA-TATCTTGGATCTTAGTATGCTCAGACCAATATGCATTTGCCCAAA
s panTro5.chr17             16349107 267 +  83181570 tccttccccccttctttccttc---------------------cttcctttcttctc--------tctttctttcatttttcc-------------------------------------------------gtctttcttcttcctctcattt--tctgtctttcctctttctcctcttcctttcctcctcctcttccttc-----------------ttcTAGAGTTTGTGGCTGCCCACCACACTTAAGAAGCAAA-------------------------------GATTGGGTCTGTGTGGAGCAAATGGTAGATTGTAGATAGGATTTCCTTATCCCATTCCTG-TATCTTGGATCTTAGTATGCTCAGACCAATATGCATTTGCCCAAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16253854 267 +  83442489 tccttccccccttctttccttc---------------------cttcctttcttctc--------tctttctttcatttttcc-------------------------------------------------gtctttcttcttcctctcattt--tctgtctttcctctttctcctcttcctttcctcctcctcttccttc-----------------ttcTAGAGTTTGTGGCTGCCCACCACACTTAAGAAGCAAA-------------------------------GATTGGGTCTGTGTGGAGCAAATGGTAGATTGTAGATAGGATTTCCTTATCCCATTCCTG-TATCTTGGATCTTAGTATGCTCAGACCAATATGCATTTGCCCAAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4100998 267 +   4267968 tccttccccccttctttccttc---------------------cttcctttcttctc--------tctttctttcatttttcc-------------------------------------------------gtctttcttcttcctctcattt--tctgtttttcctctttctcctcttcctttcCTCCTCGTCCTCCTTC-----------------TTCTAGAGTTTGTGGCTGCCCACCACACTTAAGAAGCAAA-------------------------------GATTGGGTCTGTGTGGAGCAAATGGTAGATTGTAGATAGGATTTCCTTATCCCATTCCTA-TATCTTGGATCTTAGTATGCTCAGACCAATATGCATTTGCCCAAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085907 316 -   2193130 tccttccccccttctttccttc---------------------cttccccccttctt--------tccttccttcctttcttctctttctttctttctctttctttctttcttctttgtctttctttcatttttctttcttcttcctctcattt--tctgtttttcctctttctcctcttcctttcctcctcctcttccttA-----------------TTCTAGTGTTTGTGGCTGCCCATCACATTTAAGAAGCAAC-------------------------------GATTGGGTCTGTGTGGAGCAAATGGTAGATTGTAGATAGGATTTCCTTATCCCATTCCTA-TATCTTGGatcttagtgtgctcagaccaatatgcatttgccagaa
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28052361 269 -  80997621 tccttcccctcttctttccttc---------------------cctcctttcttctctc------tctttctttcatttttct-------------------------------------------------gtctttcttcttcCTCTCATTT--TCCGTTTGTCCTCTTTCTCCTCTTCCTTTCCTCCTCCTCTTCCTTC-----------------TTCTAGAGTTTGTGGCCGCCCACCACATTTAAGAAGCAAA-------------------------------GACTGAGTCTGTGTGGAGCAAATGGTAGGTTGTAGATAGGATTTCCTTATCCCATCCCTA-TATCTTGGATCTTAGTGTGCTCAGACTAATTTGCATTTGCCAGAA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2108877 269 +  10377808 tccttcccctcttctttccttc---------------------cctcctttcttctctc------tctttctttcatttttct-------------------------------------------------gtctttcttcttcctctcattt--tccgtttgtcctctttctcctcttcctttcctcctcctcttccttc-----------------ttcTAGAGTTTGTGGCCGCCCACCACATTTAAGAAGCAAA-------------------------------GACTGAGTCTGTGTGGAGCAAATGGTAGGTTGTAGATAGGATTTccttatcccatcccta-tatcttggatcttagtgtgctcagactaatttgcatttgccagaa
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1994030 269 -   8458610 tccttcccctcttctttccttc---------------------cctcctttcttctctc------tctttctttcatttttct-------------------------------------------------gtctttcttctttctctcattt--tccgtttgtcctctttctcctcttcctttcctcctcctcttccttc-----------------ttCTAGAGTTTGTGGCTGCCCACCACGTTTAAGAAGCAAA-------------------------------GACTGAGTCTGTGTGGAGCAAATGGTAGGTTGTAGATAGGATTTCCTTATCCCATCCTTA-TATCTTGGatcttagtgtgctcagactaatgtgcatttgccagaa
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64963798 295 +  75148670 ttccttccctctttcttttttctttttttctttcttcttttattttccttccttccctctgttgttctgtttttctttctttc-------------------------------------------------atctttcctcctcctctcatct--tctgtcccttcccttcctccgcttcctctcttcctcttcttccttc-----------------ttCTAGAGCTTGTGGCTGTCCATCGTATTTAAGTAGCAAT-------------------------------ATTTGACT-TGAGTGGAGCTAATTGTAGGTCATAGACAAGTTTTCATGACTGCACCCATA-TATCTTGGATATTAGTGTGCTTGGATTAATTTCCATCTGTCAGAG
i chlSab2.chr16             C 0 C 0
s colAng1.NW_012122154v1     2201235 270 +   4569836 tccttgccctcttctttccttc---------------------cctcctttcttctctc------tctttctttcatttttct-------------------------------------------------gtctttcttcttcctctcattt--tctgtttgtcctctttctcctcttcctttcctcttcctcttccttc-----------------ttcTAGAGTTTGTGGTCGCCCACCACATTTAAGAAGCAAA-------------------------------GACTGAGTCTGTGTGGAGCAAATGGTAGGTTGTAGATAGGATTTCCTTATCCCATCCCTATTATCTTGGATCTTAGTGTGCTCAGACTAATATGCATTTGCCAGAA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46151548 260 - 159171411 accctccttccctccttctttc---------------------cttccttcct---c--------cctccctcccttctttct-------------------------------------------------gtctttcttcttcctctcatct--tctgttcttcctctttctcctcttcctctcc---tcgtcttccttc-----------------ttctAGAGTTTGTGGTTGCTTACCGCATTTAAGAAGCAAA-------------------------------GGTTGGGTCTGTGTGGAGCAAATGGTAGAGTGTAGCTAAGATTTCATTATTCCAC-CCTG-TATCTTGGatcttagtgtactcagaccaatatacattcgccagaa
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1871798 263 +   3513951 tccttctttcctttcttccttc---------------------cttccttcct------------tctctctttcAtcttttt-------------------------------------------------gtctttcttctccttctcatct--tctgttcttcctctttctcctcttcctctcctcttcatcttccctc-----------------ttctAGAGTTTGTGGTTGTTTACCACATTTAAGAAGCAAA-------------------------------GATTGGGTCTGTGTGGAGCAAATGGTAGATTGTAGCTTAGATTTCATCATCCCACACCTT-TGTCTTGGAACTTAGTGTTCTCATACCAATATGCATTTGCCAGAA
i saiBol1.JH378271          I 1 C 0
s cebCap1.NW_016107543v1        7384 267 -   4077172 tccttttttccttatttcctcc---------------------ctcccttccttcat--------tctctctttcatctttct-------------------------------------------------gtctgtcttcttcctctcatct--tctgttcttcctctttctcctcttcctctcctcctcgtcttccttc-----------------ttcTAGAGTTTGTGGTTGCTTACCACATTTAAGAAGCAAA-------------------------------GATTGGGTCTGTGAGGAGCAAATGGTAGGTTGTAACTAAGATTTCATCATCCCACCCCTG-TATCTTGGATCTCAGTGTACTCAGATCAATATGCGTTTGCCAGAA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        1182 259 -     94492 tccgtcctaccttccttccttc---------------------cctcccttcc---a--------tctctctttcatctttct-------------------------------------------------g----tcttcctcctctcatct--cctgttcttcctctttctcctcttcctctcctcCTTGTCTTCCTTC-----------------TTCTAGGCTTTGTGGTTGCTTACCACATTTAAGAAGCAAA-------------------------------GTTTGGGTCTGTGTGGAGCAAATGGTAGATTGTAGCTAAGATTTCATTATCCCAC-CCTG-TATCTTGGATCTTAGTGTACTCAGACCAACATGCATTTGCCAGAA
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            629180 310 -    852752 tcctaccttccttccttccttc-----------------------ttctttctgatc--------tatctttttttcccactc-------------------------------------------------accttccctctgtccccaattctgtctatttcttctactcctccccttctcctcctcttcatcttcttccACTTTTTACCCCATATATTTAAAAAATTGTGTATAT-----GAATTTGAATAGGAAAAACAGATTGGAGTAAGCTTAACATGACGTGTGATTCAACCTCTGCAGAGGAAAGGTTGTATTCTACATTAAGTTTTAAACACCCACCCATG-CATCTTGTATCCTGGTGTAGTCAGATTGATTTCCATCTACCAATA
i dasNov3.JH570468          I 38825 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e manLeu1.NW_012106252v1     2178055 21584 +   4244037 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=2153258.000000
s hg38.chr17_JH159148v1_alt    38350 277 +     88070 TCTGCATCTGTGTGCCTATGGGCTCTTGTATTGTTACTGCAGAAAGTCATGTCGCCTGTGCGTGCCACACAgagaaaaacactcaaccaatgattccagagcactggtttgtgaagactctagcttcctcattcctgaagtaggataattctaatttg-------tttgtttttcattatttctaatagtgttttgtttggtttaagctt-taattggtcactgtgat-actagtttaatagtctacccttttctgtgtcacttctccaatacctgctggtgtgat
s panTro5.chr17             16349374 277 +  83181570 TCTGCATCTGTGTGCCTACAGGCTCTTGTATTGTAACTGCAGAAAGTCATGTTGCCTGTGCGTGCCACATAgagaaaaacactcaaccaatgattccagagcgctgatttgtgaagactctagcttcctcattcctgaagtaggataattataatttg-------tttgtttttcattatttctaatagtgttttgtttggtttaagctt-taattggtcactgtgat-actagtttaatagtctacccttttctgtgtcacttctccaatacctgctgttgtgat
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16254121 278 +  83442489 TCTGCATCTGTGTGCCTACAGGCTCTTGTATTGTAACTGCAGAAAGTCATGTCGCCTGTGCGTGCCACATAgagaaaaacactcaaccaatgattccagagcgctgatttgtgaagactctagcttcctcattcctgaagtaggataattataatttg-------tttgtttttcattatttctaatagtgttttgtttggtttaagcttataattggtcactgtgat-actagtttaatagtctacccttttctgtgtcacttctccaatacctgctggtgtgat
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4101265 277 +   4267968 TCTGCATCTGTGTGCCTACAGGCTCTTGTATTGTAACTGCAGAAAGTCATGTCGCCTGTGCGTGCCACACAgagaaaaacactcaaccaatgattccagagagctgatttgtgaagactctagcttcctcattcctgaagtaggataattctaatttg-------tttgtttttcattatttctaatagtgttttgtttggtttaagctt-taattggtcactgtgat-actagtttaatagtctacccttttctgtgtcacttctccaatacctgctggtgtgat
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2086223 277 -   2193130 tctgcatctctgtgcctatgggctcttgtactgtaactgcagaaagtcatgtcgcctgtgcatgccacacagagaaaagcactcaaccaatggttccagacagctgatttgtgaagagtctagcttcctcatttctgaagtagaataattctaatttg-------tttgtttttcattatttctgatagtattttgtttggtttaagctt-taattggtcactgtgat-actagtttaatagtctacccttttctgtatcacttctccaatacctgctggtgtgat
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28052630 277 -  80997621 TCTGCATCTCTGTGCCTACGGGCTCTTGTATTGTAACTGCAGAAAGTCAAGTCGTCTGTGCGTGCCACACAgagaaaaacactcaaccaatgattccggagagctgatttgtgaagactctagcttcctcattcctgaagtaggataattctaatttg-------tttgtttttcattatttcTGGTAGTATTTTGTTTTGTCTAAGATT-TAGTTGGTCCCCGTGAT-ACTAATTTTATAGTCTACCCTTTTCTGTGTCACTTCTTCAATACCtgctggtgtgat
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2109146 277 +  10377808 tctgcatctctgtgcctacgagctcttgtattgtaactgcagaaagtcaagtcgtctgtgcatgccacacagagaaaaacactcaaccaatgattccggagagctgatttgtgaagactctagcttcctcattcctgaagtaggataattctaatttg-------tttgtttttcattatttcTGGTAGTATTTTGTTTTGTTTAAGATT-TAGTTGGTCCCCGTGAT-ACTAATTTTATAGTCTACCCTTTTCTGTGTCACTTCTTCAATACCtgctggtgtgat
i macNem1.NW_012014910v1    C 0 I 2484
s cerAty1.NW_012006043v1     1994299 277 -   8458610 tctgcatctctgtgcctacgggctcttgtattgtaactgcagaaagtcatgtcgcctgtgcatgccacacagagaaaaacactcaaccaatgattccggagagctgatttgtgaagactctagcttcctcattcctgaagtaggataattctaatttg-------tttgtttttcattatttctgatagtattttgttttgtttaagctt-tagttggtcaccgtgac-actaatttaatagtctacccttttctgtgtcacttcttcaatacctgctggtgtgat
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64964093 276 +  75148670 TCTGCATCTCTGTGCCTAAGGGCTCTTGTATTGCACCTGTAGAAAGTCATGTCACCTGTGAATGCAACACAGAGGAAAACActcaaccaacaattctggagagctgatttataaagactctagcttcctcattcctgaagtaggataattctag-ctg-------tgtgtttttcatcatttctgataattttccctgtaacataagttt-cagttggtgactgtgat-actgacttaatagtgaacccttttctgtgtcacttccccactccctaccagtgtgat
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2199639 276 +   4244037 TCTGCATCTCTGTGGCCAAGGGCTCTGGTATTGCAGCTGTAGAAAGTCATGTCACCTGTGAAGGCAACACAgagaaaaacactcaaccaatgattctggagagctgatgtataaagactctagcttcctcattcctgaagtagggtaattctag-ctg-------tgtgtttttcatcttttctgatagatttccctttagtttaaagtt-taattgctcactgtgat-actgacttaatagtgaaccctcttctgtatcacttccccagttcctaccagtgtaat
i manLeu1.NW_012106252v1    I 21584 C 0
s colAng1.NW_012122154v1     2201505 269 +   4569836 TCTGCATCTCTGTGCCTATGGGCTCTTGTATTGTAACTGCAGAAAGTCATGTCTCCTGTGCATGCCACACAGAGAAAAA--------CAATGATTCCGGAGAGCTGATTTGTGAAGACTCTAGCTTCCTCATTCCTGAAGTAGGATAATTCTAATTTG-------TTTGTTTTTCATTATTTCTGATAGTATTTTGTTTTGTTTAAGCTT-TAGTTGGTCACCGTGAT-ACTAATTTAATAGTctacccttttctgtgtcacttcttcaatacttgctggtgtgat
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46151808 273 - 159171411 tctgcatctctgtgcctaagggctcttgtattgcaactgaagaaagtcaagtcacctgtgcatgtcacacagag-aaatcattcaaccaatggttctggagagttgatttatgaagactctagctttgtccctcctgaagc-aggtcattctaacttg-------tttttttttcatcatttctgac-aatttttttttgttttaagc-t-taattggtcactgtgat-actaatttcttagtgtacccttttctttatcacttctccagcatctactgttgtgat
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1872061 275 +   3513951 TCTCCATCTCTGTGCCTAAGGTCTCTTGCGTTGCAATTGAAGAAAGTCATGTCACCTGTGCACGTCACACACAG-AAagcattcaaccaatgattctggagagttgatttatggagactctagctttgttcttcctgaagtaagataattctaatttg--------ttgtttttcatcatttctgacaaatttttgtttggtttaagctt-tatttggtcactgtgat-actagtttagtagtgtacccttttctgtatcacttctccaacatctactggtgtgat
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        7651 282 -   4077172 TCTGCATCTCTGTGCCTAAGGGCTCTTGTATTGCAACTGAGGAAGGTGAAGTCACCTGTGCATGTCACACAGAG-AAATCATTCAACCAATGATTCTGGACAGTTGATTTATGAAGACCCTAACTTTGTCCTTCCTGAAGCAGGACAATTCTAAttttttttttttttttttttCATCATTTCTGACAATTTTTTGTTTCTTTTAAGC-T-TAATTGGTCCCTGTGAT-ACTAATTTATTAGTGTAcccttttctttatcacttctccagcctctactgttgtgat
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        1441 274 -     94492 TCTGCAACTCTGTGCCTAAGGGCTCTTGTATTGCAACTGAAGAAAGTCAAGTCACCTGTGCGTGTCACCCAGAG-AAATCATtcaaccaatgattctggagagttgatttatgaagactctaactttgtccttcctgaagcaggataattccaatttg--------tttttttccatcatttctgccaattttttgtttgttttcagc-t-taattggtcactgtggt-gctaatttagtagtgtacccttttctttatcacttctccagcatctactgttgtgag
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            629490 272 -    852752 TCTGAATGTCTCTTCCTAACAGCTTCTATTAAGCAAGTGGAGAAAGTCATGTATCCTGTGCATATCTTGctgagaaaaacactaaacccataattttggagatttggctt-taaagaccccagttccctcattcctttaatagaataattcaaacat--------tgtgtttat----acacctgataggttccattcaagtttaaactt-cacttgtgcattgtgacgacctgcttgatagtgtaattttccttgtgccactttcccaattcttaacagtgcaat
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=985388.000000
s hg38.chr17_JH159148v1_alt    38627 159 +     88070 ctgcactttcc-aataaactactttcactggaatatttttcttggagtttgtt-atggga-aaaccaaact-----CTGATATTACATTTcctctctcagactcaattttctcatctctacaatgggaacattaatacctactttgaatgtttcttcaagaattaat
s panTro5.chr17             16349651 159 +  83181570 ctgcactttcc-aataaactactttcactggaatatttttcttggagtttgtt-atggga-aaaccaaact-----CTGATATTACATTTcctctctcatactcaattttctcatctctacaatgggaacattaatacctactttgaatgtttcttcaagaattaat
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16254399 159 +  83442489 ctgcactttcc-aataaactactttcactggaatatttttcttggagtttgtt-atggga-aaaccaaact-----CTGATATTACATTTcctctctcagactcaattttctcatctctacaatgggaacattaatacctactttgaatgtttcttcaagaattaat
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4101542 159 +   4267968 ctgcactttcc-aataaactactttcactggaatatttttcttggagtttgtt-atggga-aaaccaaact-----CTGATATTACATTTcctctctcagactcaattttctcatctctacaatgggaacattaatacctactttgaatgtttcttcaagaattaat
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2086500 158 -   2193130 ctgtattttcc-aataaactactttcactggaatatttttctagaagtttgtt-atgcgg-aaaccaaaTT-----CTGATATTAcatttcctctctcagcctcaattttctcatctctacaatgggaacattaatacc-actttgaatgtttcttcaagaattaat
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1994576 159 -   8458610 ctgcacttttc-aataaactactttcactggaatatttttctcggagtttgtt-atggga-aaaccaaact-----CTGATATTACATTTcctctctcagtctcaattttctcatctccacaatgggaacattaatacctactttgaatgtttcctgaagaattaat
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64964369 160 +  75148670 ctgcacttccc-agtaaactactttcactggaatcttttcttcagagtctctt-ctatgagaaactaatct-----atgacaATACGTTCActctctcagcctcaaatttctcatctctacaaagggaacattaatacctattttgaaagtttgttaaagagttaat
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2199915 160 +   4244037 ctgcatttccc-aataaactagtttccctggaatcttttcttcagcgtctctt-ctgggagaaACTTATCT-----GTGACATTATGttaactccctcagcctcaattttcttatctctaccatgggaacatgaacacctattctgaaagtttgttaaagaattaat
i manLeu1.NW_012106252v1    C 0 T 21127
s colAng1.NW_012122154v1     2201774 159 +   4569836 ctgcactttcc-aataaactactttcactggaatatttttctcggagtttgtt-atggga-aaaccaaact-----CTGATATTACGTTTcctctctcagtctcaattttctcatctccacaatgggaacattaatacctactttgaatgtttctttaagaattaat
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46152081 159 - 159171411 tcgtacttttc-aataaactactttcactggaatattttcctcagagtttgtt-atggga-aaaccaaact-----CTGATACTAcacttcttctctcagaatcagttgtctcatctctacaatgggaacattaacacctaatttgaaggtttcttcaagaattaat
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1872336 159 +   3513951 cggtagttttc-aataaactactttcactggaatatttt-ctaagagtttgttgatagga-aaaccgaaCT-----CTGATATTACATTTcctctctcagtctcaattttctcatctctacaatgggaacattaacacctcctttgagtgtttcttcaataattaat
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        7933 159 -   4077172 tcgtacttttc-aataaactactttcactggaatattttcctcagagtttctt-atggga-aaaccaaact-----CCGATAGTAcactttctctcccagcctatattttctcatctctacagtgggaacattaatacctaccttgaatgtttcttcaagaattaat
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        1715 159 -     94492 ccattcttttc-aacaaactactttcactggaatattttcctcagagtttgtt-atggga-aaaccaaact-----CTGATACTAcacttcctctctcagcctcaattttctcatctctacaatgggaacattaacacctactttgaatgtttcttcaggaatgaat
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            629762 166 -    852752 ttatacttccctaataaactactttcacttgaatctttttcttggcattgtac-atgggagaaaccaaaccaTATGATggcattactttaactctcttagcttttatttcctcatctctaaaaggaaggtattaatgcctaccttgctagcttcttcaagaatttga
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macNem1.NW_012014910v1     2109423 2484 +  10377808 I
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=347107.000000
s hg38.chr17_JH159148v1_alt    38786 60 +     88070 gataatgttcataaagcatttaat-caatacccattaaatagtaggcaacctaggacatat
s panTro5.chr17             16349810 60 +  83181570 gataatgttcataaagcatttaat-caatacccattaaatagtaggcaacctaggacatat
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16254558 60 +  83442489 gataatgttcataaagcatttaat-caatacccattaaatagtaggcaacctaggacatat
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4101701 60 +   4267968 gataatgttcataaagcatttaat-caatacccattaaatagtaggcaacctaggacatat
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2086658 60 -   2193130 gataatgttcataaagaatttaat-caatacccattaaatagtaggcaacttaggacatat
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1994735 60 -   8458610 gataatgttcataaagcatttaac-caataaccattaaatggtaggcaacctaggacatat
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64964529 54 +  75148670 agtaatgtacacaaagcacttagc-caat-accatcatatagcaggcatcccagaa-----
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2178948 60 +   4244037 GATAATGTTCATAAAGCATTTAAC-CAATAACCATTAAATGGTAGGCAACCTAGGACATAT
i manLeu1.NW_012106252v1    T 21127 C 0
s colAng1.NW_012122154v1     2201933 60 +   4569836 gataatgttcataaagcatttaAT-CAATAACCATTAAATGGTAGGTAACCTAGGACATAT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46152240 60 - 159171411 gataatatccataaggcatttagt-taatgcccatgaaatggtaggcagcctaggacatat
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1872495 60 +   3513951 gaaaatatccataaaagttttagt-caatacccatgaaatagtaggcaacccaggacatat
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        8092 60 -   4077172 gattatatccacaaggcatttagt-caatacccatgtaatagtaggcAACCTGTGACTTAT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        1874 60 -     94492 gataatgtccataaggcatttaat-caatgcccatgaaatagtaggcaagctaggacatat
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            629928 61 -    852752 gataatctatacagagcatctagtccaataccttgtgagcagtGGACAAACCAGAATATTT
i dasNov3.JH570468          C 0 T 84952
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macNem1.NW_012014910v1     2109423 2484 +  10377808 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=403731.000000
s hg38.chr17_JH159148v1_alt    38846  76 +     88070 tag---ttttttttTTGTCCAGAGAA------------------------------------CTCCTAATTTTAATGTTGAAGATAAGAATACATGAATAATAATTAACCAGATC
s panTro5.chr17             16349870  76 +  83181570 tag---ttttttttTTGTCCAGAGAA------------------------------------CTCCTAATTTTAATGTTGAAGATAAGAATACATGAATAATAATTAACCAGATC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16254618  76 +  83442489 tag---ttttttttTTGTCCAGAGAA------------------------------------CTCCTAATTTTAATGTTGAAGATAAGAATACATGAATAATAATTAACCAGATC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4101761  76 +   4267968 tag---ttttttttTTGTCCAGAGAA------------------------------------CTCCTAATTTTAATGTTGAAGATAAGAATACATGAATAATAATTAACCAGATC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2086718  78 -   2193130 tagtt-ttttttttTTGTCCAGAGAA------------------------------------CTTCTAATTTTAATGTTGAAGATAAGAATACATGAATAATAATTAACCAGATC
i nomLeu3.chrUn_GL397460_1  C 0 I 1569
s cerAty1.NW_012006043v1     1994795  79 -   8458610 tagttTTCGTTTTTTTGTCCAGAGAA------------------------------------CTTCTAATTTTAATGTTGAAGATAAGAATACATGAATAATAATTAACCAGATA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64964583  73 +  75148670 ------ttagtgttttgttCAGAAAA------------------------------------TTCCTAATTTTAATGTTGAAGATAAGAATATTTTTGTAATAATTAACTAGATC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2179008  79 +   4244037 TGGTTTTCGTTTTTTTGTCCAGAGAA------------------------------------CTTCTAATTTTAATGTTGAAGATAAGAATACATGAATAATAATTAACCAGATC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2201993  79 +   4569836 TAGTTTTCACTTTTTTGTCCAGAGAA------------------------------------CTTCTAATTTTAATGTTGAAGACAAGAATACATGAATAATAATTAACCAGATC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46152300 112 - 159171411 tag---ttgttTCTATGTCCATAGAAAATATTCTGTTTTATTCTACAGGATGTTCATAGAACATTCTAATTTTAATGTTGAAGATAAGAAACCATGAATCATAATTAACTAGATT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1872555  76 +   3513951 tag---ttgtttttTTGTCCATAGAA------------------------------------CTTCTAGTTTTAATGTTGAAGGTAAGAAAACATGAATCATAATTAACTAGATT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        8152  76 -   4077172 TAG---TTGTTTTTTTGTCCATAGAA------------------------------------CTTCTAGTTTTAATGTTGAAGATAAGAAAACATTAGTAATAATTATGTAGATT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        1934  76 -     94492 tag---ttgtttttATATCCCTAGAA------------------------------------CTTCCAGTTTTAATGTTGATGATAAAAAAACATGAATAATAATTAACTAGATG
i aotNan1.NW_018505111v1    C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            629989 84952 -    852752 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macNem1.NW_012014910v1     2109423 2484 +  10377808 I
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=304061.000000
s hg38.chr17_JH159148v1_alt    38922 57 +     88070 AACTCACTTCTTTCtttactagctttattgaggcataattgataaataaaaataaaa
s panTro5.chr17             16349946 57 +  83181570 AACTCACTTCTTTCtttactagctttattgaggcataattgataaataaaaataaaa
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16254694 57 +  83442489 AACTCACTTCTTTCtttactagctttattgaggcataattgataaataaaaataaaa
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4101837 57 +   4267968 AACTCACTTCTTTCtttactagctttattgaggcataattgataaataaaaataaaa
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2088365 57 -   2193130 aacTCACTTCTTTCtttactagctttactgaggcataattgataaataaaaataaaa
i nomLeu3.chrUn_GL397460_1  I 1569 C 0
s cerAty1.NW_012006043v1     1994874 57 -   8458610 AACTCACTTCTTTCtttactagctttattgaggcataattgataaataaaaataaaa
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64964656 52 +  75148670 AACTAAATACATTtttttctagctgtgctgaggtataattgacaaatg-----aaaa
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2179087 57 +   4244037 AACTCACTTCTTTCtttactagctttattgaggcataattggtaaataaaaataaaa
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2202072 57 +   4569836 AACTCACTTCTTTCtttactagctttattgaggcataattgataaataaaaataaaa
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46152412 56 - 159171411 AACTAACTTCATt-tttactagctttattgagacacaattgaccaataaagatgaaa
i calJac3.chr5              C 0 I 1
s saiBol1.JH378271           1872631 52 +   3513951 AACTAACTTCATt-tttactagctttattgaggcaca----actaacaaaaataaaa
i saiBol1.JH378271          C 0 I 1
s cebCap1.NW_016107543v1        8228 56 -   4077172 AACTAACTTCTTt-tttactggctttattgagacacaattgacaaataaaaataaaa
i cebCap1.NW_016107543v1    C 0 I 1
s aotNan1.NW_018505111v1        2010 56 -     94492 AACTATCTTCTTt-tttgatagctttattgagacacacttgacaaataaaaataaaa
i aotNan1.NW_018505111v1    C 0 I 48
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            629989 84952 -    852752 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macNem1.NW_012014910v1     2109423 2484 +  10377808 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=147840.000000
s hg38.chr17_JH159148v1_alt    38979  49 +     88070 ttgtgtatatttaatgtgtacga---------------------------------------------------ggtgatgttt--------------------------tgag--------------------------atatgtatatac
s panTro5.chr17             16350003  49 +  83181570 ttgtgtatatttaatgtgtacga---------------------------------------------------ggtgatgttt--------------------------tgag--------------------------atatgtatatac
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16254751  49 +  83442489 ttgtgtatatttaatgtgtacga---------------------------------------------------ggtgatgttt--------------------------tgag--------------------------atatgtatatac
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4101894  49 +   4267968 ttgtgtatatttaatgtgtacga---------------------------------------------------ggtgatgttt--------------------------tgag--------------------------atatgtatatac
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2088422  75 -   2193130 ttgtgtatatttaatgtgtatga---------------------------------------------------ggtgatgttt--------------------------tgagatatatatatacgtatatatatacatatatatatatac
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1994931  49 -   8458610 ttgtgtatatttaatgtgtacaa---------------------------------------------------cgtgatgttt--------------------------tgag--------------------------atatatgtatat
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64964708  45 +  75148670 ttgtatatatttcaggaatacaa---------------------------------------------------ggtgatgctc--------------------------tgac--------------------------ata----tatat
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2179144  49 +   4244037 ttgtgtatatttaatgtgtacga---------------------------------------------------cgtgatgttt--------------------------tgag--------------------------atatatgtatat
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2202129  49 +   4569836 ttgtgtatatttaatgtatacaa---------------------------------------------------cgtgatattt--------------------------tgag--------------------------atatgtgtgtat
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46152469 124 - 159171411 ttgtgtgtgtctaaagtgtaTgaaggaaggcagggaggaaggagaaactaagaaggaatggaaagaaaggaggGGGAGATATATAAAATGAAGGCCAATGGAACAAGCAACAGg--------------------------atatatatat--
i calJac3.chr5              I 1 C 0
s saiBol1.JH378271           1872684  47 +   3513951 ttgtgtatatttaatgtgtgtga---------------------------------------------------ggtgttgttt--------------------------cagg--------------------------atatatacat--
i saiBol1.JH378271          I 1 C 0
s cebCap1.NW_016107543v1        8285  49 -   4077172 ttgtgtatgtctaaagtgtatga---------------------------------------------------ggtgttgttt--------------------------cagg------------------------atatatatatat--
i cebCap1.NW_016107543v1    I 1 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e aotNan1.NW_018505111v1        2066  48 -     94492 I
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            629989 84952 -    852752 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macNem1.NW_012014910v1     2109423 2484 +  10377808 I
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=448840.000000
s hg38.chr17_JH159148v1_alt    39028 91 +     88070 ttattgtga-attatcatatattccttagctcacatagtt-accatttcctttttatttttgtggtgtaaacacttcagatctaccttcttag
s panTro5.chr17             16350052 74 +  83181570 ttattgtga-atcatcatatattccttagctcacatagtt-accatttcctttttatttttgtggtgtaaacactt-----------------
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16254800 74 +  83442489 ttattgtga-atcatcatatattccttagctcacatagtt-accatttcctttttatttttgtggtgtaaacactt-----------------
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4101943 74 +   4267968 ttattgtga-atcatcatatattccttagctcacatagtt-accatttcctttttatttctgtggtgtaaacactt-----------------
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2088497 74 -   2193130 ttattgtga-atcatcatatattccttagctcacatagtt-accatttcctttttatttttgtggtgtgaacactt-----------------
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1994980 92 -   8458610 ttattgtgatatcatcatatattccttagctcacatagta-gccatttcctttttacttttgtggtgtgaacacttcagatctaccttcttag
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64964753 88 +  75148670 tcattgtga----atagcatattcattaggtcacgtagtt-accatttcctttttatttttgtggtgtgaacatttaagatctaccttctcag
i chlSab2.chr16             C 0 I 5566
s manLeu1.NW_012106252v1     2179193 92 +   4244037 ttattgtgatatcatcatatattccttagctcacatagtt-gccatttccttttaacttttgtggtgtgaacacttcagatctaccttcttag
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2202178 92 +   4569836 ttattgtgatatcatcatatattccttagctcacatagtt-accatttcctttttatttttgtgttgtgaacacttcagatctaccttcttag
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46152593 92 - 159171411 ttattgtgaaatcataatatattccctaactcacatagtt-acaatttccttttcacttttatggtgtgaatacctcagatctaccttcttag
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1872731 92 +   3513951 ttattgtaaaatcataatatattccttagctcacatagtt-acaatttccttttcatttgtatgctgtgaacagctcagatctaccttcttag
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        8334 93 -   4077172 ttattgtgaaatcataatatattccttagctcacatagttaacaatttccttttcatttttatggtgtgaacagctcagatctaccttcttag
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        2114 92 -     94492 ttattgtgaaatcataatatattccttagctcacatggtc-acaatttccttttcatttgtatggtgtgaacacctcagatctaccttcttag
i aotNan1.NW_018505111v1    I 48 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            629989 84952 -    852752 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macNem1.NW_012014910v1     2109423 2484 +  10377808 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=-12022.000000
s hg38.chr17_JH159148v1_alt    39119 9 +     88070 caacactcc--
s panTro5.chr17             16350126 1 +  83181570 --------c--
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16254874 1 +  83442489 --------c--
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102017 1 +   4267968 --------c--
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2088571 1 -   2193130 --------c--
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1995072 1 -   8458610 --------c--
i cerAty1.NW_012006043v1    C 0 I 2
s manLeu1.NW_012106252v1     2179285 1 +   4244037 --------c--
i manLeu1.NW_012106252v1    C 0 I 2
s colAng1.NW_012122154v1     2202270 1 +   4569836 --------c--
i colAng1.NW_012122154v1    C 0 I 2
s calJac3.chr5              46152685 3 - 159171411 --------caa
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1872823 3 +   3513951 --------aaa
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        8427 3 -   4077172 --------caa
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        2206 3 -     94492 --------caa
i aotNan1.NW_018505111v1    C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            629989 84952 -    852752 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e chlSab2.chr16             64964841 5566 +  75148670 I
e macNem1.NW_012014910v1     2109423 2484 +  10377808 I
e macFas5.chr16             28052907 0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=23180.000000
s hg38.chr17_JH159148v1_alt    39128 18 +     88070 agatctaccttcttagca
s panTro5.chr17             16350127 18 +  83181570 agatctaccttcttagca
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16254875 18 +  83442489 agatctaccttcttagca
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102018 18 +   4267968 agatctaccttcttagca
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2088572 18 -   2193130 aaatctaccttcttagca
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s chlSab2.chr16             64970407 18 +  75148670 agatctaacttcttggca
i chlSab2.chr16             I 5566 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e aotNan1.NW_018505111v1        2209  0 -     94492 C
e cebCap1.NW_016107543v1        8430  0 -   4077172 C
e canFam3.chr9              39587489 1462 -  61074082 I
e manLeu1.NW_012106252v1     2179286  2 +   4244037 I
e dasNov3.JH570468            629989 84952 -    852752 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e saiBol1.JH378271           1872826  0 +   3513951 C
e calJac3.chr5              46152688  0 - 159171411 C
e colAng1.NW_012122154v1     2202271  2 +   4569836 I
e cerAty1.NW_012006043v1     1995073  2 -   8458610 I
e macNem1.NW_012014910v1     2109423 2484 +  10377808 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=607762.000000
s hg38.chr17_JH159148v1_alt    39146 92 +     88070 catttcaggtataaaataaagcatttttgttaactatagtcacgttgctgtacactagatctgcagaactgactcatcttgcataaccgaTG
s panTro5.chr17             16350145 92 +  83181570 catttcaggtataaaataaagcatttttgttaactatagtcacgttgctgtacactagatctgcagaactgactcatcttgcataaccgaTG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16254893 92 +  83442489 catttcaggtataaaataaagcatttttgttaactatagtcacgttgctgtacactagatctgcagaactgactcatcttgcataaccgaTG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102036 92 +   4267968 catttcaggtataaaataaagcatttttgttaactatagtcacgttgctgtacactagatctgcagaactgactcatcttgcataaccgaTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2088590 92 -   2193130 catttcaggtataaaataaagcatttttgttaactatagtcacgttgctgtacactagatctgcagaactgactcagcttgcataactgaTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2111907 89 +  10377808 catttcaggtataaaataaagtattt---ttagctataaccacactactgtacagtaggtctacagaatttattcatcttgcataactgaTG
i macNem1.NW_012014910v1    I 2484 C 0
s cerAty1.NW_012006043v1     1995075 91 -   8458610 -acttcaggtataaaataaagcatttttgttaactatagtcatgttgctgtacactagatctgcagaactgactcatcttgcataactgaTG
i cerAty1.NW_012006043v1    I 2 C 0
s chlSab2.chr16             64970425 89 +  75148670 aatttcaggtatatgataaagtgttt---ataactatagtgacattactgtacagtagatgtgctgaactgattcatctttcataactgaTG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2179288 91 +   4244037 -acttcaggtataaaataaagcatttttgttaactatagtcatgttgctgtacactagatctgcagaactgactcatcttgcataactgaTG
i manLeu1.NW_012106252v1    I 2 C 0
s colAng1.NW_012122154v1     2202273 91 +   4569836 -acttcaggtataaaataaagcatttttgttaactatagtcacgttgctgtacactagatctgcagaactgactcatcttgcataactgaTG
i colAng1.NW_012122154v1    I 2 C 0
s calJac3.chr5              46152688 91 - 159171411 -attttgggtatacattaaaacatttttgttaaccatagtcactttgttgtacactagatctgcagaagttactcatcttgcacaactgaTG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1872826 91 +   3513951 -atttcaggtatacaataaaatattgttgttcactacagtcactttgttgtacactagatctgcagaagttacttatcttgcaaaactgaTG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        8430 91 -   4077172 -atttcttgtatgcaataaaacatttttgttaactatcgtcacgttgttgtacactagatctgcagaagttactcatcttgcaaaactgaTG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        2209 91 -     94492 -atttcgggtatataataacacattttttaaaactatagtcacgttgttgtacactagatctgcagaagttactcatcttgcaaaactgaTG
i aotNan1.NW_018505111v1    C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e dasNov3.JH570468            629989 84952 -    852752 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=490174.000000
s hg38.chr17_JH159148v1_alt    39238 79 +     88070 TTGGTCAAA--GAGAATGTGATAGTTCTTCAGTTTCTTTACCCCATTATGCAACAACTATCA-CAGTCAG------------TGGCTTTTGTCC
s panTro5.chr17             16350237 79 +  83181570 TTGGTCAAA--GAGAATGTGATAGTTCTTCAGCTTCTTTACCCCATTATGCAACAACTATCG-CAGTCAG------------TGGCTTTTGTCC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16254985 79 +  83442489 TTGGTCAAA--GAGAATGTGATAGTTCTTCAGCTTCTTTACCCCATTATGCAACAACTATCG-CAGTCAG------------TGGCTTTTGTCC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102128 79 +   4267968 TTGGTCAAA--GAGAATGTGATAGTTCTTCAGCTTCTTTACCCCATTATGCAACAACTATCG-CAGTCAG------------TGGCTTTTGTCC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2088682 79 -   2193130 TTGGTCAAA--GAGAATGTGATAGTTCTTCAGCTTCTTTACCCCATTATGCAACAACTATCA-CAGTCAG------------TGGCTTTTGTCT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2111996 79 +  10377808 TTGGCCAAA--GTGAATGTTTTAGGTCTTCATCTTCTTTACCCTGTCACCCAAGAAGAATCA-CAGTCAA------------TGGATTTTGTCT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1995166 79 -   8458610 TTGGTTAAA--GAGAATGTGATAGTTCTTCACCTTCTTTGCCCCATTATGCAACAGCTATCA-CAGTCAG------------TGGCTTTTGCCT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64970514 78 +  75148670 CTGGTCAAA--GAGAATGTCCTAGTT-TTCATCTCCGTTACTTCATCCCTGAACAATGATCA-CAGTAAG------------CGGCCGTTGTCT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2179379 79 +   4244037 TCGGTCAAA--GAGAATGTGATAGTTCTTCACCTTCTTTACCCCATTATGCAACAGCTATCA-CAGTCAC------------TGGCTTTTGTCT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2202364 79 +   4569836 TTGGTCAAA--GAGAATGTGATAGTTCTTCAACTTCTTTACCCCATTATGCAACAACTATCA-CAGTCAG------------TGGCTTTTGTCT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46152779 90 - 159171411 TTGGTCAGA---ACAATGTGATAGTTCTTCATCTTCTTTACCCCATCACATAATAACTATCA-CAGTCAGTATCACAGTCATTGACTTTCGTCT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1872917 78 +   3513951 GTGGTCAAA---AGAATGTGATAGTTCTTCACCTTTTTTACCCCATCACACAATGACTATCA-CAGTCAG------------TGACCTTTGTCT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        8521 78 -   4077172 TTGGTCAAA---AGAATGTGATATTTTTTCATCTTCTTTATCCCATCAAACAATGACTATCA-CAGTCAG------------TGACTTTTGTCT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        2300 78 -     94492 TTGGTCAAA---AGAATGTGATAGGTCTTCACCTTCTTCACCCCATCACACAATGACCATCA-CAGTCAG------------TGACTTTCGTCT
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            545037 82 -    852752 TTGGTTGAACCCAGAATATTTTGATTCCTCATCTCATTCACCCATCACTTCATTGGTAATCAGCAGGTAG------------AAAGTTCAGACT
i dasNov3.JH570468          T 84952 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              39587489 1462 -  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=250334.000000
s hg38.chr17_JH159148v1_alt    39317 36 +     88070 CTTAGCTGAGTCTTCTGAGCATTCTAGATACACCAC
s panTro5.chr17             16350316 36 +  83181570 CTTAGCTGAGTCTTCTGAGCATTCTAGATACACCGC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16255064 36 +  83442489 CTTAGCTGAGTCTTCTGAGCATTCTAGATACACCGC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102207 36 +   4267968 CTTAGCTGAGTCTTCTGAGCATTCTAGATACACTGC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2088761 36 -   2193130 CTTAGCTGAGTCTTCTGAGCATTCTAGATACATTGC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2112075 36 +  10377808 CTTAGCCAAGTCTTCAAAGCATTCTAGGTACACAGT
i macNem1.NW_012014910v1    C 0 I 8943
s cerAty1.NW_012006043v1     1995245 36 -   8458610 CTTAGCTGAGTCTTCAGAGCATCCTAGATATGCCGC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64970592 35 +  75148670 CTTAGCTAAGTCTTCAGAGCA-TCTAGATTCACAGT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2179458 36 +   4244037 TTTAGCTGAGTCTTCAGAGCATTCTAGATACACCAC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2202443 36 +   4569836 CTTAGCTGAGTCTTTAGAGCATTGTAGATACACCGC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46152869 36 - 159171411 CTTAGCTGAGTCTTCAGAGCATTCTAGATACACTGC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1872995 36 +   3513951 GTTAGCTGAGTGTTCAGAGCATTCTAGATACACCAC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        8599 36 -   4077172 GTTAGCTGAGTCTTCAGAGCATTCAAGATACACCAC
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        2378 36 -     94492 CTTAGCTGAGTCTTCAGAGCATTCTAGATACACCGC
i aotNan1.NW_018505111v1    C 0 C 0
s canFam3.chr9              39588951 36 -  61074082 CTTGGCAGCCTGTCCAGAGCCTCCCATAGAGCTAGT
i canFam3.chr9              I 1462 C 0
s dasNov3.JH570468            545119 31 -    852752 CTTGGTTG-----TCTGAACAAGTTCGACACATGCT
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=56910.000000
s hg38.chr17_JH159148v1_alt    39353 7 +     88070 CTCAGAA
s panTro5.chr17             16350352 7 +  83181570 CTCAGAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16255100 7 +  83442489 CTCAGAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102243 7 +   4267968 CTCAGAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2088797 7 -   2193130 CTCAGAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2121054 7 +  10377808 CTCAAAA
i macNem1.NW_012014910v1    I 8943 C 0
s cerAty1.NW_012006043v1     1995281 7 -   8458610 CTTAGAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64970627 7 +  75148670 CTCAGAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2179494 7 +   4244037 CTTAGAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2202479 7 +   4569836 CTTAGAA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46152905 7 - 159171411 CTCAGAA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1873031 7 +   3513951 CTCAGAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        8635 7 -   4077172 CTCAGAA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        2414 7 -     94492 CTCAGAA
i aotNan1.NW_018505111v1    C 0 C 0
s canFam3.chr9              39588987 7 -  61074082 CTCCAAT
i canFam3.chr9              C 0 T 1647
s dasNov3.JH570468            545150 7 -    852752 TTTGGAT
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28052907 0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=1126896.000000
s hg38.chr17_JH159148v1_alt    39360 156 +     88070 GCTGGTATCTGTCCTGGAAACCTACATTGTTAGCTCCTCAGAGGTATTTCTACCACTCCCATGCCGGTAGGAGGTCCCAAGAAGGTGGCCCAGGTCCCTAACTTTTCTAATTCTCTCAGGGCCAGTATCAATGAATCCCTCC--ATGACTGAATACTT
s panTro5.chr17             16350359 156 +  83181570 GCTGGTATCTGTCCTGGAAACCTACATTGTTAGCTCCTCAGAGGTATTTCTACCACTCCCATGCCGGGAGAAGGTCCCAAGAAGGTGGACCAGGTCCCTAACTTTTCTAATTCTCTCAGGGCCAGTATCAATGAATCCCTTC--ATGACTGAATACTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16255107 156 +  83442489 GCTGGTATCTGTCCTGGAAACCTACATTGTTAGCTCCTCAGAGGTATTTCTACCACTCCCATGCCGGGAGGAGGTCCCAAGAAGGTGGACCAGGTCCCTAACTTTTCTAATTCTCTCAGGGCCAGTATCAATGAATCCCTCC--ATGACTGAATATTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102250 156 +   4267968 GCTGGTATCTGTCCTGGAAACCTACATTGTTAGCTCCTCAGAGGTATTTCTACCACTCCCATGATGGTAGGAGGTCCCAAGAAGGTGGCCCAGGTCCCTAACTTTTCTAATTCTCTCAGGGCCAGTATCAGTGAATCCCTCC--ATGACTGAATACTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2088804 156 -   2193130 GCTGGTGTCTGTCCTGGAAACCTACATTGTTAGCTCCTCAGAGGTATTTCTACCACTCCCATGCTGGTAGGAGGTCCCAAGAAGGCGGCCCAGGTCCCTAACTTTTCTAATTCTCTCAGAGCCAGTATCAATGAATCCCTCC--ATGACTGAATACTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2121061 156 +  10377808 GTTGGCATCTGTCATGGAAATCCACATTGTTAGCTCATCAGAGGTATTTCCACCACTCCCATGCTGGTAGGAGGTCCCAAGAAGGTGACCCAGGTCCCCGACTTTTCAATTTCTCTCAGAGTCAGCATCAATCAATCCTTAC--ATGAGTGAATGCTT
i macNem1.NW_012014910v1    C 0 T 8943
s cerAty1.NW_012006043v1     1995288 156 -   8458610 GCTGGCATCTGTCCTGGAAACCTACATCGTTAGCTCCTCAGAGGTATTTCTATCATTCCCATGCTGGTAGGAGGTCCCAAGAAGGGGGCCCAGGTCCCTAACTTTTCTAATTCTCTCAGGGCCAGTATCAATCAACCCCTCC--ATGATTGAATACTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64970634 156 +  75148670 GTTGGCATCTGTCATGGAAATCTACTTTGCTAGCTCATCAGAGGTATTTCCACCACTCCCATGGTGGTAGGAGGTCCCAAGAAGGTGACCCAGGTCCCCAAACTTTATATTTCTCTCAGAGCCAATATCAATCAATCCTTCC--ATGAGTGAGTGCTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2179501 156 +   4244037 GCTGGCGTCTGTCCTGGTAACCTACATCGTTAGCTCCTCAGAGGTATTTCTATCATTCCCATGCTGGTAGGAGGTCCCAAGAAGGTGGCCCAGGTCCCTAACTTTTCTAATTCTCTCAGGGCCAGTATCAATCAACCCCTCC--ATGATTGAATACTT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2202486 156 +   4569836 GCTGGCATCTGTCCTGGAAACCTACATTGTTAGCTCCTCAGAGCTATTTCTATCATTCCCATGCTGGTAGGAGGTCCCAAGAAGGGGGCCCAGGTCCCTAACTTTTCTAATTCTCTCAGGGCCAGTATCAATCAACCCCTCC--ATGATTGAATACTT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46152912 156 - 159171411 GTTGGCATCTGTCTTGGAAACCTACCTTGTTAGCTCTTCAGAAGTATTTTTACCCGTCCCACGCCGGCAGGAGGTCCCAAGATGGTGGCCCAGGTCCCTAACAGTTCTAATTCTCTCAGGGCCAGTATCAATCAATCATTCC--ATGACTGAATACTT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1873038 156 +   3513951 GTTGGCATCTGTCTTGGAAACCTACATTGTTAGCTCATTAGAGGTATTTTTACCCGTCCCACGCTGGTAGGAGGTCACAAGATGGTGGCCCAGGTCCCTAACTTTTCTAATTCTCTTAGGGACAGTACCAATCAATTCTTCC--ATGACTGAATACTT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        8642 156 -   4077172 GTTGGCATCTGTCTTGGAAACCTACATTGTTAGCTCATCAGAGGTATTTTTACCCATCCCATGCTGGTAGGAGGTGCCAAGATGGTGGCCCAGGTCCCTAACTTTTCTAATTCTCTCGGGGTCAGTATCAATCAATTATTCC--ATGACTGAATACTT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        2421 156 -     94492 GTTGGCATCTGTCCTGGAAACCTACATTGGTAGCTCATCAGAGGTACTTTTACCCATCCCACGCTGGTAGGAGGTCCCAAGATGGTGGCCCAGGTCCCTAACTTTTCTAATTCTCTCGGGGCCGGTATCAATCCATCGTTCC--ATGACTGAATACTT
i aotNan1.NW_018505111v1    C 0 C 0
s canFam3.chr9              21478143 132 +  61074082 GTTGGTGTGTGCCCTGGGCAGGAGCCTTCCTGGTTCTTCAGAGGTCCCTCCACTGCTCCT-------------------GGGAGTTGACACAGGG-CCTAGGTTTCCTCTTCCTCT------CAGTCTGAATTAAGCATCTCAAATCCCTGAGCACCA
i canFam3.chr9              T 3101 I 1
s dasNov3.JH570468            545157 114 -    852752 TCTGGTGTGCTTCCCTCATATGTGTACTGTTAGGTCATCACAGATACTTCTTTTGCTCTCA--------------------AGGAAGGACAAAGTCCCTGAACCTTCTATTACTGTCA-AGTCAGTATCAGGCTT-----------------------
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=-748.000000
s hg38.chr17_JH159148v1_alt    39516 1 +     88070 -C
s panTro5.chr17             16350515 1 +  83181570 -C
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16255263 1 +  83442489 -C
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102406 1 +   4267968 -C
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2088960 1 -   2193130 -C
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1995444 1 -   8458610 -C
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64970790 1 +  75148670 -A
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2179657 1 +   4244037 -C
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2202642 1 +   4569836 -C
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46153068 1 - 159171411 -C
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1873194 1 +   3513951 -C
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        8798 1 -   4077172 -C
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        2577 1 -     94492 -C
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            545271 1 -    852752 G-
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              21478275 1 +  61074082 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macNem1.NW_012014910v1     2121217 8943 +  10377808 T
e macFas5.chr16             28052907 0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=98124.000000
s hg38.chr17_JH159148v1_alt    39517 15 +     88070 AGTTGCATCATCAGT---
s panTro5.chr17             16350516 15 +  83181570 AGTTGCATCATCAGT---
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16255264 15 +  83442489 AGTTGCATCATCAGT---
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102407 15 +   4267968 AGTTGCATCATCAGT---
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2088961 15 -   2193130 AGTTGCATCATCAGT---
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2112274 15 +  10377808 GGTTGCATCATCAGT---
i macNem1.NW_012014910v1    T 8943 C 0
s cerAty1.NW_012006043v1     1995445 15 -   8458610 AGTTGCATCATCAGT---
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64970791 12 +  75148670 ACTTG---CATCAAT---
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2179658 15 +   4244037 AGTTGCATCATCAGT---
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2202643 15 +   4569836 AGTTGCATCATCAGT---
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46153069 15 - 159171411 AGTTGCGTCATCAGT---
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1873195 15 +   3513951 AGGTGCATCAGCAGT---
i saiBol1.JH378271          C 0 T 12136
s cebCap1.NW_016107543v1        8799 15 -   4077172 ATTTGCATCATCACT---
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        2578 15 -     94492 AGTTGCGTACTCAGT---
i aotNan1.NW_018505111v1    C 0 C 0
s canFam3.chr9              21478276 15 +  61074082 AGCTGCATCATTACT---
i canFam3.chr9              I 1 I 4
s dasNov3.JH570468            545272 15 -    852752 ---TGTAGCTTCCTTTCA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=588699.000000
s hg38.chr17_JH159148v1_alt    39532 80 +     88070 TCAGGAACAAAAGCGCCAGTTTTCCATCTATCATGACTTCCATGAATGAGAAAGTTCTTCCACGTTTCCTCCTTCTTAAA
s panTro5.chr17             16350531 80 +  83181570 TCAGGAACAAAAGCGCCAGTTTTCCATCTATCATGACTTCCATGAATCAGAAAGTTCTTCCACGTTTCCTCCTTCTTAAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16255279 80 +  83442489 TCAGGAACAAAAGCGCCAGTTTTCCATCTATCATGACTTCCATGAATCAGAAAGTTCTTCCACGTTTCCTCCTTCTTAAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102422 80 +   4267968 TCAGGAACAAAAGCGCCAGTTTTCCATCTATCATGACTTCCATGAATGAGAAAGTTCTTCCACGTTTCCTTCTTCTTAAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2088976 80 -   2193130 TCAGGAACAAAAGCACCAATCTTCCATCTATCATGACTTCCATGAATGAGAAAGTTCTTACACTTTTCCTCCTTCTTAAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2112289 80 +  10377808 TTGGGGCCAACAGCACCAGCCATCTGTCTACCATGACTTCGATGAATGCACACATTTTTCTACTTTTAGTCCTTCTTACA
i macNem1.NW_012014910v1    C 0 I 12650
s cerAty1.NW_012006043v1     1995460 80 -   8458610 TCAGGAACAAAAGCACCAGTCTTCCATCTGTCATGACTTCCATGAATGAGAAAGTTCTTCCACTTTTCCTCCTTCTTAAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64970803 76 +  75148670 TCAGGACCAAAAGCACCAG-CTTCTGTCTATCATGACTTCTATGAATGCACAAGTTCT---ACTTTGCTCCTTTCTTACA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2179673 80 +   4244037 TCAGGAACAAAAGCACCAGTCTTCCATCTGTCATGACTTCCATGAATGAGAAAGTTCTTCCACTTTTCCTCCTTCTTAAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2202658 80 +   4569836 TCAGGAACAAAAGCACCAGTCTTCCATCTATCATGACTTCCATGAATGAGAAAATTCTTCCACTTTTCTTCCTTCTTAAA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46153084 80 - 159171411 TCAGGAACAAAAGTACCAGTCTTCCATCTATCGTGTCTTCCACAAATGAGAAAGTTCTTCCACTTTTCCTCCTTCTTAAA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1861074 80 +   3513951 TCAGGAACAGAAGTACCAGTCTTCCGTCTATTGTGTCTTCCACAAATGAGAAAGTTCTGCCACTTTTCCTCCTTCTTAAA
i saiBol1.JH378271          T 12136 C 0
s cebCap1.NW_016107543v1        8814 80 -   4077172 TCAGGAACAAAAGTACCAGTCTTCCATCTATCGTGTCTTCCACGAATGAGAAAGTTCTACCACTTTTCCTTCTTCTTAAA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        2593 80 -     94492 TCAGGAACAAAAGTACTAGTCTTCCATCTATCGTGTCTTCCAGGAATGAGAAAGTCCTTCCACTTTTCCTCCTTCTTAAA
i aotNan1.NW_018505111v1    C 0 C 0
s canFam3.chr9              21478295 79 +  61074082 TCAGGACCAGAAGTGCTAGGCTTCTGTCTCTGGCAACTCCTATGAATGCCCACATTTTTTCTC-TTTCTTCTTCCTCACA
i canFam3.chr9              I 4 I 10
s dasNov3.JH570468            545287 77 -    852752 TCACAATTAAAAGCAGCAGCCTCCTATCTGTCATAACTCTCATGTATGCACAGGTTCTTCTATTTGTTTTTCGACAA---
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=173778.000000
s hg38.chr17_JH159148v1_alt    39612 21 +     88070 TTCTTCTGATTTCC-CTGGAAA
s panTro5.chr17             16350611 21 +  83181570 TTCTTCTGATTTCC-CTGGAAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16255359 21 +  83442489 TTCTTCTGATTTCC-CTGGAAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102502 21 +   4267968 TTCTTCTGATTTCC-CTGGAAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2089056 21 -   2193130 TTCTTCTGATTTCC-CTGGAAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2125019 21 +  10377808 TTCTTCTGATTTCC-CTGGAAA
i macNem1.NW_012014910v1    I 12650 C 0
s cerAty1.NW_012006043v1     1995540 21 -   8458610 TTCTTCTGATTTCT-CTGGAAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64970879 21 +  75148670 TTCTTCTGATTTCC-CTGGAAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2179753 21 +   4244037 TTCTTCTGATTTCC-CTGGAAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2202738 21 +   4569836 TTCTTCTGATTTCC-CTGGAAA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46153164 21 - 159171411 TTCTACTGATATCC-CTGAAAA
i calJac3.chr5              C 0 I 1
s saiBol1.JH378271           1861154 21 +   3513951 TTCTACTGATTTCC-CTGGAAA
i saiBol1.JH378271          C 0 I 1
s cebCap1.NW_016107543v1        8894 21 -   4077172 TTCTACTGATTTCC-CTGGAAA
i cebCap1.NW_016107543v1    C 0 I 1
s aotNan1.NW_018505111v1        2673 21 -     94492 TTCTACTGATTTCC-CTGAAAA
i aotNan1.NW_018505111v1    C 0 I 11
s canFam3.chr9              21478384 21 +  61074082 TCCCTCCATTTTTT-CTGCCCA
i canFam3.chr9              I 10 I 9
s dasNov3.JH570468            545364 19 -    852752 ---TACTTGTTTCCACTAAAAA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=20899.000000
s hg38.chr17_JH159148v1_alt    39633 11 +     88070 CACAGGTTTTT-
s panTro5.chr17             16350632 11 +  83181570 CACAGGTTTTT-
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16255380 11 +  83442489 CACAGGTTTTT-
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102523 11 +   4267968 CACAGGTTTTT-
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2089077 11 -   2193130 CAGAGGTTTCT-
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2125040 11 +  10377808 CAAAAGTTTTT-
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1995561 11 -   8458610 CACAGGTTTTT-
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64970900 10 +  75148670 CACA-GTTTTT-
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2179774 11 +   4244037 CACAGGTTTTT-
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2202759 11 +   4569836 CACAGGGTTTT-
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46153186 10 - 159171411 CAGAAGAACT--
i calJac3.chr5              I 1 C 0
s saiBol1.JH378271           1861176 10 +   3513951 CAGAAGAATT--
i saiBol1.JH378271          I 1 C 0
s cebCap1.NW_016107543v1        8916 10 -   4077172 CAGAAGAATT--
i cebCap1.NW_016107543v1    I 1 C 0
s canFam3.chr9              21478414 11 +  61074082 CAGGCAGCTTT-
i canFam3.chr9              I 9 C 0
s dasNov3.JH570468            545383 10 -    852752 --CAATGCTTTA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e aotNan1.NW_018505111v1        2694 11 -     94492 I
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=59276.000000
s hg38.chr17_JH159148v1_alt    39644 9 +     88070 GGTTTCTTG
s panTro5.chr17             16350643 9 +  83181570 GGTTTCTTG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16255391 9 +  83442489 GGTTTCTTG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102534 9 +   4267968 GGTTTCTTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2089088 9 -   2193130 GGTTTCCTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2125051 9 +  10377808 TGTTTCTTT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1995572 9 -   8458610 GGTCTCTTG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64970910 9 +  75148670 AGTTTCTTG
i chlSab2.chr16             C 0 I 426
s manLeu1.NW_012106252v1     2179785 9 +   4244037 GGTCTCTTG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2202770 9 +   4569836 GGTCTCTTG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46153196 9 - 159171411 GGTTTCTTC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1861186 9 +   3513951 CGTTTCTTT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        8926 9 -   4077172 GGTTTCTTT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        2705 9 -     94492 GGTTTCTTT
i aotNan1.NW_018505111v1    I 11 C 0
s canFam3.chr9              21478425 8 +  61074082 -CTTTCCCT
i canFam3.chr9              C 0 I 1
s dasNov3.JH570468            545393 9 -    852752 ATTTTCCTC
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28052907 0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=195346.000000
s hg38.chr17_JH159148v1_alt    39653 26 +     88070 AGATGCTTCCTATTTGCCTCACAAAA
s panTro5.chr17             16350652 26 +  83181570 AGATGCTTCCTATTTGCCTCACAAAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16255400 26 +  83442489 AGATGCTTCCTATTTGCCTCACAAAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102543 26 +   4267968 AGATGCTTCCTATTTGCCTCACAAAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2089097 26 -   2193130 AGATGCTTCCTATTTGCCTCACAAAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2125060 26 +  10377808 AGATGCTTCATATTGGCCTCACAAAA
i macNem1.NW_012014910v1    C 0 I 6169
s cerAty1.NW_012006043v1     1995581 26 -   8458610 AGATGCTTCCTATTTGCCTCACAAAA
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2179794 26 +   4244037 AGATGCTTCCTATTTGCCTCACAAAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2202779 26 +   4569836 AGATGCTTCCTATTTGCCTCACAAAA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46153205 26 - 159171411 AGATGCTTCCTATTTGCCTCACAAAA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1861195 26 +   3513951 ACGTGCTTCCTATTTGCCTCACAAAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        8935 26 -   4077172 AGATGCTTCCTATTTGTCTCACAAAA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        2714 26 -     94492 AGATGCTTCCTGTTTGTCTCGCAAAA
i aotNan1.NW_018505111v1    C 0 C 0
s canFam3.chr9              21478434 26 +  61074082 CAATGCTTCACAGTTCCTGCACCAAA
i canFam3.chr9              I 1 C 0
s dasNov3.JH570468            545402 26 -    852752 ACATGCTTTCATTGTACCTGAAAAAG
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e chlSab2.chr16             64970919 426 +  75148670 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=441759.000000
s hg38.chr17_JH159148v1_alt    39679  84 +     88070 CTCAGAAGGTTGTTTTATACCT----------------TTATGGTTTGTACAAAG---TCATACATGCCCATTGCATAGTC----CCTCAATCCCCAAAT-TTGTTTC-
s panTro5.chr17             16350678  84 +  83181570 TTCAGAAGGTTGTTTTATACCT----------------TTATGGTTTGTGCAAAG---TCATACATGCCCATTGCATAGTC----CCTCAATCCCCAAAT-TTGTTTC-
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16255426  84 +  83442489 TTCAGAAGGTTGTTTTATACCT----------------TTATGGTTTGTGCAAAG---TCATACATGCCCATTGCATAGTC----CCTCAATCCCCAAAT-TTGTTTC-
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102569  84 +   4267968 CTCAGAAGGTTGTTTTATACCT----------------TTATGGTTTGTGCAAAG---TCATACATGCCCATTGCATAGTC----CCTCAATCCCCAAAT-TTGTTTC-
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2089123  82 -   2193130 CTCAGAAGGTTGTTTTATACCT----------------TTATGGTTTGTGC--AG---TCATACATGCCCATTGCATAGTC----CCTCAATCCCCATAT-TTGTTTC-
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1995607 100 -   8458610 CTCAGAAGGTTGTTTTATGCCTTTAGTTGGCACAGAGATTATGGTTTGTGCAAAG---GCATACATGCCCATTGCATAGTC----CCTCGATCCCCAAAT-TTGTTTC-
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2179820 100 +   4244037 CTCAGAAGGTTGTTTTATGCCTTTAGTTGGCACAGAGATTATGGTTTGTGCAAAG---GCATACATGCCCATTGCATAGTC----CCTCGATCCCCAAAT-TTGTTTC-
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2202805 100 +   4569836 CTCAGAAGGTTGTTTTATGCCTTTAGTTGGCACAGAGATTATGGTTTGTGCAAAG---GCATACATGCCCATTGCATAGTC----CCTCGATCCCCAAAT-TTGTTTT-
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46153231 100 - 159171411 CACAGAAGGTCGTTTTCTACCTTTAGTCGGCACAGAGATTATGGTTTGTGCAAAG---CCATACATGCCCACTGGATAGTC----CCTCAATCCCCAAAT-GTGTTTT-
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1861221 100 +   3513951 CACAGAAGGTTGTTTTCTACCTTTAGTCTGCACAGAGATTATGGTTTGTGCAAAG---CCATACATGCCCACTGGTTAGTC----CCTCAATCCCTAAAT-TTGTTTT-
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        8961 100 -   4077172 CACACAAGGTTGTTTTCTACCTTTAGTCAGCACAGAGATTATGGTTTGTGCAAAG---CCACACATGCCCATTGGATAGTC----CCTCAATCCCCAAAT-ATTTTTT-
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        2740  99 -     94492 CACAGAAGGTTGTTTTCCACCTTTAGTAGGCACAGAGATCACGGTTTGTGCACAG---CCATACGTG-CCAGTGGATAGTC----CCTCAGTCCCCACAT-TTGTTTT-
i aotNan1.NW_018505111v1    C 0 C 0
s canFam3.chr9              21478460 103 +  61074082 TGCTGGTGGTTGTGTTGTTCCCCTTGATTTTTCAGAGGTCCCAGATGAGTCCAAGTCATCATACATGCCCACTGAACGGTC----TCTCAGACCCTGATG-TCATCCT-
i canFam3.chr9              C 0 I 1
s dasNov3.JH570468            545428  99 -    852752 --CAGAAAAGTTATCCTTACTCTTTGGTGGACCAGA--TTGTAGATCGATGAAAA---TCATACATGACCA---CAAAGCTTTAATTTCAATCCTAAAGCACTGTTCTT
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e chlSab2.chr16             64970919 426 +  75148670 I
e macNem1.NW_012014910v1     2125086 6169 +  10377808 I
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=1165170.000000
s hg38.chr17_JH159148v1_alt    39763 159 +     88070 ACTTAATTTTCCTAATAACATTTTGATTTGAGGGACAATTTGACTTAA------TGTG----GCTTAATGTATGGTCCATATTTTAGAAGGAATAACTTAAATTCTTTTTGCTTTGTCAACAGGTATTCAGGAGAAGGAAGCCATATAAGAATATTATTTACGTGATAC
s panTro5.chr17             16350762 159 +  83181570 ACTTAATTTTCCTAATAACATTTTGATTTGAGGGACAATTTGACTTAA------TGTG----GCTTAATGTATGGTCCATATTTTAGAAGAAATAACTTAAATTCTTTTTGCTTTGTCAACAGGTGTTCAGGAGAAGGAAGCCATATAAGAATATTATTTACGTGATAC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16255510 159 +  83442489 ACTTAATTTTCCTAATAACATTTTGATTTGAGGGACAATTTGACTTAA------TGTG----GCTTAATGTATGGTCCATATTTTAGAAGAAATAACTTAAATTCTTTTTGCTTTGTCAACAGGTGTTCAGGAGAAGGAAGCCATATAAGAATATTATTTACGTGATAC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102653 159 +   4267968 ACTTAATTTTCCTAATAACATTTTGATTTGAGGGACAATTTCACTTAA------TGTG----GCTTAATGTATGGTCCATATTTTAGAAGGAATAACTTAAATTCTTTTTGCTTTGTCAACAGGTATTCAGGAGAATGAAGCCATATAAGAATATTATTTACGTGATAC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2089205 159 -   2193130 ACTTAATTTTCCTAATAACATTTTGATTTGAGGGACAATTTGACTTAA------TGTG----GCTTGATGTATGGTCCATATTTTAGAAGGAATAACTTAAATTCTTTTTGCTTTGTCAACAGGTATTCAGGAGAAAGAAGCCATATAAGAATATTATTTACATTATAC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2131255 157 +  10377808 ACTTAATTTTCCTCATAACATTTCTATTAG-GGGACAAATTGTTTTAA------TGTG----GCATAAGGTATGGTCTGTATTTTACAAGGAATAACTTAGTTTC-ATTTACTTTGTCATTAGGTATTCAGGAGATGGAGGCCATATAAGAATTTTATTTACATGATAC
i macNem1.NW_012014910v1    I 6169 C 0
s cerAty1.NW_012006043v1     1995707 159 -   8458610 ACTTAATTTTTCTAATAACATTTTGATTTGAGGGACAATTTGACTTAA------CGTG----GCTTAATGTATGGTCCATATTTTAGAAGGAATAACTTAAATTCTTTTTGCTTTGTCAACAGGTATTCAGGAGAAGGAAGCCATATAAGAATATTATTTATGTGATAC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64971345 157 +  75148670 ACTTAATTTTCCTCATAACATTTCGATTAG-GGGACAAATTGTCTTAA------CGTG----GCATAAGGTATGGTCTGTATTTTACAAGGAATAACTTAGTTTC-ATTTACTTTGTCATTAGGTATTCAGGAGACAGAGGCCATATAAGAATTTTATTTACATGATAC
i chlSab2.chr16             I 426 C 0
s manLeu1.NW_012106252v1     2179920 159 +   4244037 ACTTAATTTTTCTAATAACATTTTGATTTGAGGGACAATTTGACTTAA------CGTG----GCTTAATGTATGGTCCATATTTTAGAAGGAATAACTTAAATTCTTTTTGCTTTGTCAACAGGTATTCAGGAGAAGGAAGCCATATAAGAATATTATTTATGTGATAC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2202905 159 +   4569836 ACTTAATTTTTCTAATAACATTTCTATTTGAGGGACAATTTGACTTAA------CGTG----GCTTAATGTATGGTCCATATTTTAGAAGGAATAACTTAAATTCTTTTTGCTTTGTCAACAGGTATTCAGGAGAAGGAAGCCATATAAGAATATTATTTATGTGATAC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46153331 158 - 159171411 ACATAATTTTCCTAATAACAATTTGATGTGAGGGACAATTTCACTTAA------TGTG----GCTTAATGTATTGTCCACATTTTAGAGGAAATAACTTAATTTCATTTTGCTTTGTCAACAGGTATTCAGGAGAAGGAAGCCATATAAGAAT-TTATTTACATGATAT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1861321 158 +   3513951 ACATAATTTTCCTAATAACAGTTTGATTTGAGGGACAATTTGACTTAA------TG-G----GCTTAATGTATTGTCCATATTTTAGAGGAAATAACTTAATTTCATTTTACCTTCTCAACAGGTTTTCAGGAGAAGGAAGCCATATAAGAATATTATTTATATGATAT
i saiBol1.JH378271          C 0 I 12201
s cebCap1.NW_016107543v1        9061 159 -   4077172 ACTTAATTTTCCTCATAACATTTTGATTTGAGGGACAGTTTGATTTAG------TGTT----GCTTAATATATTGTCCACATTTTAGAGGAAATAACTTAATTTCATTTTGCTTTGTCAACAAGTATTCAGGAGAAGGAAGCCGTAGAACAATATTATTTACATGATAT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        2839 159 -     94492 GCTTCATTTTCCTGATAACAGTTTGATTTGAGGGACAATTTGACTTAA------TGTG----GCTTAATGTATTGTCCACATTTTAGAGGAAATAACTTAATATCATTTTGCTTTATCAACAGGTATTCAGGAGAAGGAAGCCATATAAGAATATTATTTACATGATAT
i aotNan1.NW_018505111v1    C 0 C 0
s canFam3.chr9              21478564 154 +  61074082 TCTTCCTTTTCTTGGGAACATGTTGATCACAACACCAATTATGTTCCA------GTTGAGGAGCACAATGT---------GTTTGGCAGAAAGTTGCCTGACAGCTCTGGACTCTGCCTAGAGGTCTTGAGCACCAGGAGGACATAGCAGAAAAGGTCTTCCATGACCC
i canFam3.chr9              I 1 C 0
s dasNov3.JH570468            545527 161 -    852752 ACTTAATTTTCTAAATAATGTTTTGATCCA---GAAGAGCTGACTTAAAATTGGTGGA----ACACAATATCTCATGTAGGTTTTGCAAGGTTTTACTTAGTTCCTTTTTA-TCTGCTAACAACTTCTCAGAAGAAAGAAGTCATATAAGAATTTGATTTGCACGAGAC
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=24565.000000
s hg38.chr17_JH159148v1_alt    39922 8 +     88070 CAGGAAAA
s panTro5.chr17             16350921 8 +  83181570 CAGGAAAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16255669 8 +  83442489 CAGGAAAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102812 8 +   4267968 CAGGAAAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2089364 8 -   2193130 CAGGAAAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2131412 8 +  10377808 TGAGAATG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1995866 8 -   8458610 CAGGAAAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64971502 8 +  75148670 TAAGATTG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2180079 8 +   4244037 CAGGAAAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2203064 8 +   4569836 CAGGAAAA
i colAng1.NW_012122154v1    C 0 C 0
s canFam3.chr9              21478718 8 +  61074082 CACAATGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            545688 8 -    852752 CAAGGAGA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e aotNan1.NW_018505111v1        2998 0 -     94492 C
e cebCap1.NW_016107543v1        9220 0 -   4077172 C
e otoGar3.GL873537          22862060 5348 +  28711273 I
e saiBol1.JH378271           1861479 12201 +   3513951 I
e calJac3.chr5              46153489 0 - 159171411 C
e macFas5.chr16             28052907 0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=1627646.000000
s hg38.chr17_JH159148v1_alt    39930 258 +     88070 AAAT-----CCCCAAATGAGATCCTCTCTCATGAGGACACAATGCATTCTCAAAAT--TTTCTGATGCAGATTAATTGAATAAATAGCTGGTCAAAGACTGAGACA---AAAAGGGATCCTCACTCAGGGCAGCTATTAAATGCCGTCCCTGTTGTCATCCCATGTAGCTATTACTCACTGAGGTGTGGAAAACTAATTTGGGA---AGACCTTTGT-----GAACAGAAATGTCGTCTGCAAATATGAGAGATTATACCTCCCA-CATTAAATAAA----
s panTro5.chr17             16350929 258 +  83181570 AAAT-----CCCCAAATGAGATCCTCTCTCATGAGGACACAATGCATTCTCAAAAT--TTTCTGATGCAGATTAGTTGAATAAATAGCTGGTCAAAGACTGAGACA---AAAAGGGATCCTCACTCAGGGCAGCTATTAAATGCCGTCCCTGTTGTCATCCCATGTAACTATTACTCACTGAGGTGTGGAAAACTAATTTGGGA---AGACCTTTGT-----GAACAGAAATTTCGTCTGCAAATATGAGAGATTATACCTCCCA-CATTAAATAAA----
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16255677 258 +  83442489 AAAT-----CCCCAAATGAGATCCTCTCTCATGAGGACACAATGCATTCTCAAAAT--TTTCTGATGCAGATTAGTTGAATAAATAGCTGGTCAAAGACTGAGACA---AAAAGGGATCCTCACTCAGGGCAGCTATTAAATGCCATCCCTGTTGTCATCCCATGTAACTATTACTCACTGAGGTGTGGAAAACTAATTTGGGA---AGACCTTTGT-----GAACAGAAATTTCGTCTGCAAATATGAGAGATTATACCTCCCA-CATTAAATAAA----
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4102820 258 +   4267968 AAAT-----CCCCAAATGAGATTCTGTCTCATGAGGACACAATGCATTCTCAAAAT--TTTCTTATGCAGATTAATTGAATAAATAGCTGGTCAAAGACTGAGACA---AAAAGGGATCCTCACTCAGGGCAACTGTTAAATGCCGTCCCTGTTGTCATCCCATGTAGCTATTACTCACTGAGGTGTGGAAAACTAATTTGGGA---AGACCTTTGT-----GAACAGAAATGTCATCTGCAAATATGAGAGATTATACCTCCCA-CATTAAATAAA----
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2089372 258 -   2193130 AAAT-----CCCCAGATGAGACCCTCTCTCATGAGGACACAATGCATTCTCAAAAT--TTTCTGATGCAGATTAATTGAATAAATAGCTGGTCAAAGACTGAGACA---AAACGGGATCCTCACTCAGGGCAGCTATTAAATGCAGTCCCTGTTGTCATCCCATGTAGCTATTACTCACTGAGGTGTGGAAAACTAGTTTGGGA---AGACCTTTGT-----GAACAGCAATGTTATCTGCAAATATGTGAGATTATACCTCCCA-CATTAAATAAA----
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2131420 262 +  10377808 AGTCA----CTTCAGACGAGACTCTCTCTCATGATGATATAATGAATTCTCAAGCATCTTTCCAATGCAGATGAATTGAATGATTGGCTAGTCAGAGGCTGAGATA---AAAAGATCCCTGCATTCAAGGCAGCCATTAAATGCAGTCCCTGCTGCCATATTATGCAGCTGTTGCTCACTGAGGTGTGGGAAATTAATTTGGGA---ATTCTTTTGT-----GAACAAGAATATTATCTGCAAATATGAGAGATTATTCCTCTCATTGTTAAATAAA----
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1995874 259 -   8458610 AAAAT----TCCCAAATGAGATCCTCACTCATGAGGACACAATGCATACTCAAAAA--TTTCTGATGCAGATTAATTAAATGAATAGCTGGTCAACGGCTGAGACA---AAAAGGAATCCTCACTCAGGGCAGCTATTAAATGCAGTCCCTGTTGTCATACCACGTAGCTATTGCTCACTGAGGTGTGGAAAACTAATTTGGGA---AGACCTTTGT-----TAACAGAAATGTTATCTGCAAATATGAGAGATTATACCTTCCA-CGTTAAATAAA----
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64971510 265 +  75148670 AGTCA----CTTCAGATGAGACTCTCTCTCATGATGATATAATGAATTCTCAAGCATCTTTTCAATGCAGATGAATTGAATGATTGGCTGGTCAGAGGCTGAGATA---AAAAGATCTCTGCATTCAGGGCAGCCATTAACTGCAGTCCCTGCTGCCATATTATGCAGCTGTTGCTCACTGAGGTGTGGGAAACTAAGTTGGAAATGAAGTTTGTGT-----GAACAAAAATGTTATCTGCAAATATAAGTGATTAATCCTCTCATTGTTAAAGAAA----
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2180087 258 +   4244037 AAAT-----CCCCAAATGAGATCCTCACTCATGAGGACACAATGCATACTCAAAAA--TTTCTGATGCAGATTAATTAAATGAATAGCTGGTCAACGGCTGAGACA---AAAAGGAATCCTCACTCAGGGCAGCTATTAAATGCAGTCCCTGTTGTCATACCACGTAGCTATTGCTCACTGAGGTGTGGAAAACTAATTTGGGA---AGACCTTTGT-----TAACAGAAATGTTATCTGCAAATATGAGAGATTATACCTTCCA-CGTTAAATAAA----
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2203072 259 +   4569836 AAAAT----CCCCAAACGAGACCCTCACTCATGAGGACACAATACATTCTCAAAAA--TTTCTGATGCAGATTAATTAAATGAATAGCTGGTCAAAGGCTGAGACA---AAAAGGAATCATCACTCAGGGCAGCTATTAAATGCAGTCCCTGTTGTCATACCATGTAGCTATTGCTCACTGAGGTGTGGAAAACTAATTTGGGA---AGATCTTTGT-----GAACAGAAATGTTATCTGTAAATATGAGAGATTATACCTCCCA-CGTTAAATAAA----
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46153489 257 - 159171411 AAAT-----CCTCAGATCAGACTCTCTTTCATGGGGGCACAATGCATTCTCACAAA--TGTTTGATCCAGATTAATTGAATAAATACCTGGTCAGAGGTAGAGAGG----AAAGAGATCCACATTCAGGGGAGCTATTAAATGCAATCCCGGTTTTCATACCATGTAGCTATTACTCAGTGAGGTGTGGAAAACTAATTTGGGA---AGACCTTTGT-----GAACAGAAATGTTATCTGCAAATGTGAGAGATTATACCACCCA-TGTTCACTAAA----
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1873680 262 +   3513951 AAAT-----TCTCAGATCAGACTCTCTTTC-TTGGGACAGAATGCATTCTCACAAA--TGTTTGATGCAGATTAATTGAATAAGTAGCTGGTCAGAGGCAGAGTGG---AAAAGAGAGCCACATTCAGGGGAGCTATTAAATGCAGTCCCTGTTTTCATACCATGTAGCTATTGCTCACTGAGGTGTGGAAAACTAATTTGGGA---AGACCTTTTTGAACAGAACAGAAATGTTATCTGCAAATATGAGAGATTATACCGCCCA-TGTTCAATAAA----
i saiBol1.JH378271          I 12201 C 0
s cebCap1.NW_016107543v1        9220 262 -   4077172 AAAT-----CCCCAAATGAGACTCTCTTTC-ATGGGACACCATGCATTCTCACAAA--TGTTTGATGCAGATTAATTGAATAAATAGCTGGTCAGGGACGGAGAGG---AAAAGAGATCCACATTCAAGGGAGCTATTAAATGCAGTCCCTGTTTTCATACTATGTAGCTATTGCTCACTGAGGTGTGGAAAACTAATTTCGGA---AGACCTTTGAGAACAGAACAGAAATGTTATCTGCAAATATGAGAGATTATACCACCCA-TGTTCAATGAA----
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        2998 257 -     94492 AAAT-----CCCCAAATGAGACTCTCTTTC-ATGGGACACAGTGCATTCTCACAAA--TGCTTGACGCAGATTAATTGAATAAATAGCTGGTCAGAGGCGGAGAGG---AAAAGAGAGCCAGATTCAGGGGAGCTATGAAATGCAGTCCCTGTTCTCATACCGTGTAGCTATTGCTCACTGAGGTGTGGAAAACTAATTTGGGA---AGACCTTTGT-----GAACAGAAATGTTATCTGCAAATATGAGAGATTACACCGCCCA-TGTTCAATAAA----
i aotNan1.NW_018505111v1    C 0 C 0
s canFam3.chr9              21478726 252 +  61074082 GTGT-----GTTCAGTTGCAGCCTTTGGTTGTGAGGACACCAT--AGGCTCACCTA--TCTTTGATGCGGAAGAG-TGCATGAGGGGCTGGATGGGGCCTGAGGAAATCAAAGGGTCCCTGTGTGCACAGGAGCTCTCCGGGGCAGGGCCTGCTGCCCTCACACAGGGCTCCTGGTCGCTGAGGTTTAGGACACGAATATCT-----CTACCTTTGT--------CCCAGACATCTCTCACATGTACAGGAGAATAAA-TTTCCA-TGGTCAACGAA----
i canFam3.chr9              C 0 I 4
s dasNov3.JH570468            545696 212 -    852752 ----AGTCCCTTTAGATCACCTCCCTGTTCAT-AGGACAACACAGATTCTCAAAA---TATTTGA-GCTGATGAATTGCATCAGTGTCT----------------------------------------TCATCTACCCACTGCT-------TGATTAAACCAT--CATTACTGCTCACTTAGGTCATGGAAACTGATTTGCAA---AGACCTTTGT-----GTACCACAATATTACCTG--AATGTTTAAGGTTAGTCCTTCTC-TTTTTAAAGATGATG
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e otoGar3.GL873537          22862060 5348 +  28711273 I
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=4416220.000000
s hg38.chr17_JH159148v1_alt    40188 622 +     88070 CTCAAGTGCATGTCTTGCTATTGCTGAGTC-T-CAATATCATTTCT-ACTT-TACCG-AGAGTTAAATGTAAGTGTTCTTGGGCAGAAAGAGAAGCTCTCACCTTGGACTAGAGTCTGTCCTTTATTAGCTACATAAAATCACACACTAAATTGttctcagctg--aaaaattgaggtaataatacataataataactctgttttcagaatcaaattggataatac-----------atataGCATGCAATATGTGTGTAAATC-TC-ATATCAGCAATTCTG-----TAAAATAAAACACCATATGAGATGAAGGATGGTTCAGAATTTATTCAGAAATATATAGGTAAGA----------ATCCCTGCTACTAGGGACATAGCCCAAAGTTACAATGAAAAGAAGAAAGAAGGGTAAAAGAAACATGAGGACAAAATTGAAAACAAAAATATGATTGCAAAGATT-----------ATTGATCAGTTGCAGAAA------------------------------CCTA-------------AGTTT------------CTTAGAAGGAGAGAATGAAGCTCTTGACTTTAGAGTCG-AATGGAGACCATGTCTCCACATTGAGAACACATGAAGCTGGCACATGATCCACAAAGTGTAAGGAAAAA-AGAATCAGGATGAAGTATTCTGCCCTCCCTCAAGCTGATTCCCAAGATTTTAAACA
s panTro5.chr17             16351187 617 +  83181570 CTCAAGTGCATGTCTTGCTATTGCTGAGTC-T-CAATATCATTTCT-ACTT-TACCG-AGAGTTAAATGTAAGTGTTCTTGGGCAGAAAGAGAAGCTCTCACCTTGGACTAGAGTCTGTCCTTTATTAGCTACATAAAATCACACATTAAATTGttctcagctg--aaaaattgtggtaataatacataataata----tgttttcagaatcaaattggataatac-----------atatagcgtgcAATAT-TGTGTAAATC-TC-ATATCAGCAATTCTG-----TAAAATAAAACACCATATGAGATGAAGGATGGTTCAGAATTTATTCAGAAATATATAGATAAGA----------ATCCCTGCTACTAGGGACATAGCCCAAAGTTACAATGAAAAGAAGAAAGAAGGGTAAAAGAAACATGAGGACAAAATTGAAAACAAAAATATGATTGCAAAGATT-----------ATTGATCAGTTGCAGAAA------------------------------CCTA-------------AGTTT------------CTTAGAAGGAGAGAATGAAGCTCTTGACTTTAGAGTCA-AATGGAGACCATGACTCCACATTGAGAACACATGAAGCTGGCACATGATCCACAAAGTGTAAGGAAAAA-AGAATCAGGATGAAGTATTCTGCCCTCCCTCAAGCTGATTCCCAAGATTTTAAACA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16255935 618 +  83442489 CTCAAGTGCATGTCTTGCTATTGCTGAGTC-T-CAATATCATTTCT-ACTT-TACCG-AGAGTTAAATGTAAGTGTTCTTGGGCAGAAAGAGAAGCTCTCACCTTGGACTAGAGTCTGTCCTTTATTAGCTACATAAAATCACACATTAAATTGTTCTCAGCTG--AAAAATTGTGGTAATAATACATAATAACA----TGTTTTCAGAATCAAATTGGATAATAC-----------ATATAGCATGCAATATGTGTGTAAATC-TC-ATATCAGCAATTCTG-----TAAAATAAAACACCATATGAGATGAAGGATGGTTCAGAATTTATTCAGAAATATATAGGTAAGA----------ATCCCTGCTACTAGGGACATAGCCCAAAGTTACAATGAAAAGAAGAAAGAAGGGTAAAAGAAACGTGAGGACAAAATTGAAAACAAAAATATGATTGCAAAGATT-----------ATTGATCAGTTGAAGAAA------------------------------CCTA-------------AGTTT------------CTTAGAAGGAGAGAATGAAGCTCTTGACTTTAGAGTCA-AATGGAGACCATGACTCCACATTGAGAACACATGAAGCTGGCACATTATCCACAAAGTGTAAGGAAAAA-AGAATCAGGATGAAGTATTCTGCCCTCCCTCAAGCTGATTCCCAAGATTTTAAACA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4103078 622 +   4267968 CTCAAGTGCATGTCTTGCTATTGCTGAGTC-T-CAATATCATTTCT-ACTT-TACCG-AGAGTTAAATGTAAGTGTTCTTGGGCAGAAAGAGAAGCTCTCACCTTGGACTAGAGTCTGTCCTTTATTAGCTACATAAAATCACACACTAAATTGTTCTCAGTTG--AAAAATTGAGGtaataatacataataataatTCTGTTTTCAGAATCAAATTGGATAATAC-----------ATATAGCATGCAATATGTGTGTAAATC-TC-ATATCAGCAATTCTG-----TAAAATAAAACACCATATGAGATGAAGGATGGTTCAGAATTTATTCAGAAATATATAGGTAAGA----------ATCCCTGCTACTAGGGACATAGCCCAAAGTTACAATGAAAAGAAGAAAGAAGGGTAAAAGAACCATGAGGACAAAATTGAAAACAAAAATATGATTGCAAAGATT-----------ATTGATCAGTTGCAGAAA------------------------------CCTA-------------AGTTT------------CTTAGAAGGAGAGAATGAAGCTCTTGACTTTAGAGTCA-AATGGAGACCATGACTCCACATTGAGAACACGTGAAGCTGGCACATGATCCACAAAGTGTAAGGAAAAA-AGAATCAGGATGAAGTATTCTGCCCTCCCTCAAGCTGATTCCCAAGATTTTAAACA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2089630 620 -   2193130 CTCAAGTGCATGTCTTGCTATTGCTGAGTC-T-CAATATCATTTCT-ACTT-TACT---GAGTTAAATGTAAGTGTTCCTGGGTGGAAAGAGAAGCTCTCACCTTGGACCAGAGTCTGTCCTTTATTAGCTACATAAAATCACACATTAAATTGTTCTCAGCTG--AAAAATTGAGGtaataatacataataataattctgttttcagaatcaaattggataatac-----------ataTAGCATGCAATATGTGTGAAAATC-CC-TTATCAGCAATTATG-----TAAAATAAAACACCATATGAGATGAAGGACGGTTCAGAATTTATTCAGAAACATATAGGTAAGA----------ATCCCTGCTACTAGGGACATAGACCAGAGTTACCATGAAAAGAACAAAGAAGGGTAAAAGAACCATGAGGACAAAATTGAAAACAAAAATATGATTGCAAAGATT-----------ATTGATCAGTTGCAGAAA------------------------------CCTA-------------AGTTT------------CTTAGAAGGAGAGAATGAAGCTCTTGACTTTAGAGTCA-AATGGAGACCATGACTCCCCATTGAGAACATATGAAGCTGGCACATGATCCACGAAGTGTAAGGAAAAA-AGAATCAGGATGAAGTATTCTGCCCTCTCTCAAGCTGATTCACAAGATTTTAAACA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2131682 623 +  10377808 CTCAAGTGCATGTCTTGCTATTGCTGACTT-C-CAATGTCA-TTCC-ACTA-TATTG-AGAATTAAATGTAAGTGTCCTTGGCCAGAAAGAgaggacctcagcttggatcagaatctgtcccttattagctacataacatcgcatattaaatttttttcaggtg--aaaaatgaaggcaataatagatgaccatc----tgttttgagaatcaaattggataatac-----------ctatggtatgtgatacgtatgtaaaTC-CC-ATATCAGGAATGCTTTCAAATAAAACAAAACACCATATGAGATGAA-GATGGTTCAGAGTTTATTCAGAAACATAGAGTTAAGA----------ATCTCTGCTACCAGGAACACAACCCAAAGTTATCATGAAAAGAAGAAAGAAGGATAGAAGAACCATGAAGAGGATATTGAAAACAAATATATGATTGCAAGGATT-----------ATTGCTCAGTTGCAGAAG------------------------------CCTA-------------AATTC------------CTTAGAAGCAGAGAATGAAGCTCATGACTTTAGAGTCACAGCTGAGACCATGACTCCAAATTGAGAGCACACGAAGCTGGCACATGATCCACAAGGGGTAAGAAAAAAGAGAAACAGGATGAAGTATTCTGACATCCATCTAGCAGATTCCCAAGATTTTAAACA
i macNem1.NW_012014910v1    C 0 I 190
s cerAty1.NW_012006043v1     1996133 623 -   8458610 CTTAAGTGCATGTCTTACTCTTGCTGAGTC-C-CAATATCATTTCT-ACTT-TACTG-AGAGTTAAATGTAAATGTTCTTGGGCAGAAAGAGAAGCTCTCACCTTGGACCAGAGTCTGTCCTTTATTAGCTACATAAAATCACACATTAAATTGttctcagctg--aaaaattgaggtaataatacatgactgtc----tgttttcagaatcaaattggataatac-----------atataGTATGCAATATGCGTGTAAATC-CC-ATATCAACAATTCGGTAAAATAAAACAAAACACCATATGAGATGAAGGATGGTTCAGAATTTATTCAGAAACGTATAGGTAAGA----------ATCCCTGCTACTAGGGACATAGCCCAAAGTTACCGTGAAAAGAAGAAAGAAGGGTAAAAGAACCACGAGGACAAAATTGAAAAGGAAAATATGATTGTAAAGATT-----------ATTGATCATTTGCAGAAA------------------------------TCTA-------------AGTTT------------CTTAGAAGGAGAGAATGAAGCTTTTGACTTTAGAGTCA-AATGGGGACCATGACTCCACACTGAGAACACATGAAGCTGGCACATGATCCACCAGGTGTAAGGAAAAA-AGAATCAGGGTGAAGTATTCTGCCCTCCCTCAAGCTGATTCACAAGATTTTAAACT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64971775 621 +  75148670 CTCAAGTGCATGTCTTGCTAGTGTTGACTT-C-CAATGTCATTTCT-ACTA-TATTG-AGAGTTAAATGTAAGTGTCCTTGGACAGAAAGAGAGGACCTCAGCTTGGATCAGAATCTGTCCTTTATTAGCTACATAACATCACACATTAAATTTTTTTCAGGTG--AAAAATGAAGGTAATAATAGATGACCATC----TGTTTTGAGAATCAAATTGGATAATAA-----------TTATGGTATGTGATACGTATGTAAATC-CT-ATATCAGAAATGCTTTCAAATAAAACAAAACACCATATGAGATGAA-GATGGTTCAGAGTTTATTCAGAAACATATAGTTAAGA----------ATCTCTGCTACCAGGAACACAACCC--AGTTATCATGAAAAGAAGAAAGAAGGATAGAAGAACCATGAAGAGGATATTGAAAACAAATATATGATTGCAAAGATT-----------ATTGCTCAGTTGCAGAAG------------------------------CCTA-------------AATTC------------CTTAGAAGCAGAGAATGAAGCTCATGACTTTAGAGTCACAGCTGAGACCGTGACTCCAGATTGAGAGCACACGAAGCTGGCACATGATCCACAAGGGGTAAGAAAAAAGAGAAACAGGATGAAGTATTCTGACATCCGTCTAGCAGATTC-CAAGATTTTAAACA
i chlSab2.chr16             C 0 T 26370
s manLeu1.NW_012106252v1     2180345 623 +   4244037 CTTAAGTGCATGTCTTACTCTTGCTGAGTC-C-CTATATCATTTCT-ACTT-TACTG-AGAGTTAAATGTAAATGTTCTTGGGCAGAAAGAGAAGCTCTCACCTTGGACCAGAGTCTGTCCTTTATTAGCTACATAAAATCACACATTAAATTGttctcagctg--aaaaattgaggtaataatacatgactgtc----tgttttcagaatcaaattggataatac-----------atataGTATGCAATATGTGTGTAAATC-CC-ATATCAACAATTCTGTAAAATAAAACAAAACACCATATGAGATGAAGGATGGTTCAGAATTTATTCAGAAACATACAGGTAAGA----------ATCCCTGCTACTAGGGACACAGCCCAAAGTTACCATGAAAAGAAGAAAGAAGGGTAAAAGAACCATGAGGACAAAATTGAAAACAAAAATATGATTGTAAAGATT-----------ATTGATCATTTGCAGAAA------------------------------TCTA-------------AGTTT------------CTTAGAAGGAGAGAATGAAGCTTTTGACTTTAGAATCA-AATGGGGACCATGACTCCACACTGAGAACACATGAAGCTGGCACATGATCCACAAGGTGTAAGGAAAAAG-GAATCAGGGTGAAGTATTCTGCCCTCCCTCAAGCTGATTCACAAGATTTTAAACG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2203331 635 +   4569836 CTTAAGTGCATGTCTTGCTCTTGCTGACTC-C-CGATATCATTTCT-ACTT-TACTG-AGAGTTAAATGTAAATGTTCTTGGGTGGAAAGAGAAGCTCTCCCCTTGGACCAGAGTCTGTCCTTTATTAGCTACGTAAAATCACACATTAAATTGttctcagctg--aaaaattgaggtaataatacatgactgtc----tgttttcagaatcaaattggataatacatataGTACATATATAGTATGCAATATGCATGTAAATC-CC-ATATCAACAATTCTGCACAATAAAACAAAACACCATATGAGATGAAGGATGGTTCAGAATTTATTCAGAAACATATAGGTAAGA----------ATTCCTGCTACTAGGGACATAGCCCAAAGTTACCATGAAAAGAAGAAAGAAGGGTAAAAGAACCATGAGCACAAAATTGAAAATGAAAATATGATTGTAAAGGTT-----------GTTGATCACTTGCAGATA------------------------------CCTA-------------AGTTT------------CTTAGAAGGAGAGAATGAAGCTCTTGACTTTAGAGTCA-AATGGAGACCACGACCCCACATTGAGAACACATGAAGCTGGCACATGATCCACAAGGTGTAGGGAAAAAAAGAATCAGGATGAAGTATTCTGCCCTCCCTCAAGCTGATTCACAAGATTTTAAACA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46153746 633 - 159171411 CTC-AGTGCATGTCTTGCTCTTACTGAATC-C-CAGTATCATTTCT-ACTG-AACTG-AGAGTTAAATAGGAGGGTTCTTGGGTAGAAAGAGAAGATCTCACCTTGGACCCGAGTCTGTCCTTTATTAGCTACATCAAATCACACAATAAATTGTTCTCAGCTG--AAAAATTGAGGCAATTACACATGAGCATC----TGTTTTCAGAATCAAATTGGATGTTAC-----------ATATAGCATGTGACATGTGTGTAGATC-AT-TTATCAGGAATTCTGTAGAATAAAACAAAACACCATATGAGATGGAGGATGGTTCATAATTTATTTAGTAACACATAGGTAAGA----------ATCTGTGCTACAAGGGACATAGTCCAGAGTTGTCATAAATAGGAGAAAGAAGGGC--AAAAACCATGAGGAGAAAATTGAAAATGAAAATACAATTGCAAAGATTCAGTTGATCAAAAGGATCAATTACAGAAA------------------------------CGCA-------------AATTT------------CTGAGAAGCAGAGAATGAAGCTCTTGAAGTTAGACTCAAAGCTGAGACCAGGACTCCAAACTGAGGACACAGGAAGCTGGCACATGATCCACAAAGTGTCAGGAGAAAGAGAATCAGGACGAAGTACTCTGCCCTCCCTCAAGCTGAATCACAAGATTTTAAACA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1873942 596 +   3513951 CTC-AGTGCTTGTCTTTTTCTTACTGAATC-C-CAATATCATTTCT-ACTT-TACTG-AGAATTAAATCGGAGTGTTGTTGGGCAGAAAGAGAGGATCTCACCTTGGACCTGAGTCTGTCCTTTATTAGCTACATCAGAGCACACAATAAATTGTTCTCGGCTG--AATAATTGAGGCAATAACACATGAGCATC----TGTTTTCAGAATCAAGTTGCATATTAC-----------ATATAGGATGCAATATGTGTGTAAATC-CC-TTAGC---AATTCTGTAGAATAAAACAAAACACCATATGAGATGGAGGATGGTTCAGAATTTATTGAGAAACATATTGGTAAGA----------ATCTGTGCTATAAGGGACTTAGCCCAGAGTTATTGTAAAAAGTAGAAAGGAGGGTA-AAAAACCATGAGGAGGAAATTGAAAATGAAAATATGATTGCAAAGATT-----------ATGGATACGTTGCAGAAA------------------------------TCTA-------------AATTT------------CTGTGAAACAGAGAATGAAGCTCTTGACTTTAGAGTCAAAGCTGAGAT-----------------------GGCAGCTGGCACATAATTCCCAAAATGTAAGGAG-AAGAGAACCAGGACGAAGTACTCTGCCCTCCCTCAAGCTGATTCACAAGATTTTAAACA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1        9482 621 -   4077172 CTC-AGTGCATGTCTTGCTCTTACTGAATC-C-CAATATCATTTCT-ACTT-TACTG-AGAGTTAAATAGGGGTGTTCTTGGGTGGAAAGAGAAGATCGAACTTTGGACCTGAGTCTGTCCTTTATTAGCTACATCAAATCACACATTAAATTGTTCTCAGCTG--AAAAATTGAGGTAATAACACATGAGCATC----TGTTTTCAGAATCAAATTGGATGTTAC-----------GTATAGCATGCAATATGTGTGTAAATT-CC-ATAGCAGCAATTCTGTAGAATAAAACAAAGCACCATATGAGATGGAGGATGGTTCAGAATTTATTTAGTCACACATAGGTAAGA----------ATATGTGCTACGAAGGGCATAGTCCATAGTTATCATAAAAAGAAGAAAAAAGGGTA-AAAAACTCTGAGGAGGAAATTGAAAATGAAAATATGATTCTGAGGATT-----------ATGGATCAGTTGAAGAAA------------------------------TCTA-------------AATTT------------CTGAGAAGCAGAGAATGAAGCTTTTGTCTTTAGAGTCAAGGCTGAGACCATGACTCC-AACTGAGGACATAGGAAGCTGGACCATGATCCCCAAAGTGTAAGAAG-AAGAGAATCAGGACAAAGTACTCTGCCCTCCCTCAACCTGATTTACGAGATTTTAAACA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        3255 623 -     94492 CTC-AGTGCATGTCTTGCTCTTACTGAATC-C-CAACATCATTTCT-ACTT-TACTG-AGAGTCAAATAGGAGTGTTCTTGGGCAGTAAGAGAAGATCTCACCTTGGACCCGAGTCTGTCCTTTATTAGCTACATCAAATCACACATTAAATTGTTGTCAGCTG--AAAAATTGAGGTAATAACACATGAGCATC----TGTTTTCAGAATCAAATTGGATATTAC-----------GTATAGCATGCAATATGTGTGAAGATC-TT-TCATCAGGAATTCTGTAGAATAAGACAAAACACCATACGAGATGGAGGATGGTTCAGAATTTATTCAGAAACGTATAGGTAAGT----------ATCCCTGCTATGAGGGACGTAGTCCAGAGTTATCATAAGAAGAAGAAAGAAGGGTA-AGAAACCATCAGGAGGAAATTGAAAATGAAAGTATGATTGCATAGATT-----------ATGGATCAGTTGCAGAAA------------------------------TCCA-------------AATTT------------CTGAGAAGCAGAGAATGAAGCTCTTGACTTTAGAGTGAAGGCTGAGACCATGACTCCAAATTGAGGACACATGAAACTGGCACATGATCCCCAAAGTGTAAGGAGAAAGAGAATCAGGAAGAAGTACTCTGCCCTCCCTCAACCTGATTCACAAGATTTTGAACA
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22867408 629 +  28711273 CTCAAGTGCACAGCTCACCAGTTCTCATTCTC-CAGTAGCAGTTCT-AGTTGCTTTG-AGATGGACATGCAGGTGCCCTTGAGCAGACACCGCAGACCCAGTCCTGGATGTCAGTGTGACTATTATTCACTACAAGACATTATGCTATGAAGTTTTCTCATCTGAAAAAAATGATATTAACAATACAAGGGTAAC----TGTATTGAAAAGAAAAATGGATAATAT-----------ATATGGCATGCCATACGTATACAAGTTGCT-GTATCAGAAA-GAAGTACAATGGAACAAAACACAACACGAGATGAATAAAGGCTCACAATTTATTAAGAAATACTTAGATAAGA----------ATGTTTG------------------------ATGATAAAAAGAAGAAAAAAGGATATTAAAAATGTGAGT---CAATTCAAAAAGAAAGCTTGATTATGATAATG-----------ATTGGTCAATATCAGAAACC-ATGAAAAGA--TGAGAGGGTTTGTTTTCCTA-------------AGTTA------------CTTAGAGGGAGAGAGTGAAGGTCTTGATATTACAGTCAAAGCCAAGACTGTAACTCCAAAGCAAGAATACAAGAAGCTGGCATGTGATCCCTTAGGGATGAGGAAGAAGAGAATCAGGAAGAAGTACTCTGCACTTGCTCCACCTGATTCACAAAGATGTAAAGA
i otoGar3.GL873537          I 5348 C 0
s canFam3.chr9              21478982 640 +  61074082 CTCCACCCAGAAGCTTGCTGGAGCTCAGGC-C-CAGGGTGTTTCCTAACTG-GTCTGCAGATGGGAATGTGAGTGCCCTTTAGCCAGGGCAGAAGATGCAGCCTGGCATCCGATTCTGTCCCTT-TCAGCTCTGTGACATAACATTATAGGATCTCCTCACCTG---CAAATGGAGATACAAATTTGTGGGGGAC----TATA-GGAGACTCCAAATGGATAATGC-----------ACATAGTATGGGACCC-TGTGCATACA-TT-TTGTCATGAATGTTGAACAAGGACATGGA-CACCATATGGGATGCAGAATGGTACAGGGTTTATTAAGAGA--TATAGGTGAGACCCTCCCCCCACCACTGCATGGAGGGAGGCCTTTGAAAGGT-TCATGCAAGGATGAAAAGAGGATACAAGGACTGTGAGGAA-----TGGAATAGAAAACTTGATCCTAAA---C-----------TTTCATTAGTGTCAGATA------------------------------CTTATCTATGATGCATGAATTTTTTTCTCTACACCTTAGTGGGATGGAAGTGAGATCTGCACTGTGTTGTAT-TGCAGATATGATGAATCCATA-TAACTATATAGGAAGCTGGCACATGATTTACAGA----CAGAAAGAACAGACTCAGTGAGAAGGGACATATATTTCATAAAGGTACTTCACATTCTTTGGAATA
i canFam3.chr9              I 4 C 0
s dasNov3.JH570468            545908 582 -    852752 TTCAATAGTGCATCTTGCTAACTCTCGATC-TGCAGCACCATTTCT-ACTTACACTG-AGATGGAAGTGTAAGAAACCTCCACCAGAGCCAGAAGACCCAGTTCTGGATCTGAGTTTGGGCATTTTTACATACATGACTTTACACAAGTGAATTTTCT-AGGTG--AT-------------------------------TATTATGAGGCAGAGAACAGATAATGC-----------CTATGG-----GATATGTATATAAATC-CCTATATCAGGAAGTCTGTACAACAAAAGGGAA----ACATGATAT-AATGATG----AGAGTTTATTGAGAGG----GAGGCAAGT----------------------------------CAAAGTGATCATAAAAAGAAGAGATCAGAACA-GAGAATCATGGATATA----TAAAATTTAAAATATGATTATGAAGATT-----------AAGGATCAAATAAAAAAACCAATGAAAAGAGTTAGGAGCACTTGTTTGCTTA-------------AGTTC------------CATGGAAGTAGTGGGTGAATTTCTTGACGTCAGAGTAAGAGCTGAGGCCATTCAGTCATGTCATGAATATAAGAAG-TAAAACATAAACCAGAAGATATAAGGAAGAAGGTAATTAGAGTGAAATATTCTGCACCTCAGCCAGCTCATTAACAAGCTTTTTAACA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=41457.000000
s hg38.chr17_JH159148v1_alt    40810 8 +     88070 GGCAAAGA
s panTro5.chr17             16351804 8 +  83181570 TGCAAAGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16256553 8 +  83442489 TGCAAAGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4103700 8 +   4267968 TGCAAAGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090250 8 -   2193130 TGCGACAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1996756 8 -   8458610 TGCAAAGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946026 8 +  75148670 TGCAGAGA
i chlSab2.chr16             T 26370 I 69
s manLeu1.NW_012106252v1     2180968 8 +   4244037 TGCAAAGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2203966 8 +   4569836 CGCAAAGA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46154379 8 - 159171411 TGCAAAAA
i calJac3.chr5              C 0 I 15
s saiBol1.JH378271           1874538 8 +   3513951 TGCAGCaa
i saiBol1.JH378271          C 0 I 13
s cebCap1.NW_016107543v1       10103 8 -   4077172 TGCAGAAA
i cebCap1.NW_016107543v1    C 0 I 2
s aotNan1.NW_018505111v1        3878 8 -     94492 TGCAGAAA
i aotNan1.NW_018505111v1    C 0 I 4
s otoGar3.GL873537          22868037 6 +  28711273 --TATAGA
i otoGar3.GL873537          C 0 I 2
s canFam3.chr9              21479622 7 +  61074082 -GCCTAAT
i canFam3.chr9              C 0 I 1
s dasNov3.JH570468            546490 8 -    852752 TGCAGATG
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e macNem1.NW_012014910v1     2132305 190 +  10377808 I
e macFas5.chr16             28052907 0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=243035.000000
s hg38.chr17_JH159148v1_alt    40818 60 +     88070 AAT-AAAAA----AAAT--TGGTGAAAGCATACTGTGTA-TCAGTAAAGT-TTGAAAGTAAATCTGTCT
s panTro5.chr17             16351812 60 +  83181570 AAT-AAAAA----AAAT--TGGTGAAAGCATACTGTGTA-TCAGTAAAGT-TTGAAAGTAAATTTATCT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16256561 59 +  83442489 AAT--AAAA----AAAT--TGGTGAAAGCATACTGTGTA-TCAGTAAAGT-TTGAAAGTAAATTTATCT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4103708 61 +   4267968 AATAAAAAA----AAAT--TGGTGAAAGCATACTGTGTA-TCAGTAAATT-TTGAAAGTAAATTTGTCT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090258 60 -   2193130 AAT-AAAAA----ACAT--TCGTGAAAGCATACTGTGTA-TCAGTAAAGT-TTGAAAGTAAATTTGTCT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1996764 61 -   8458610 AATAAAAAA----AAAT--TGGTGAAAGCATACTGTGTG-TCAGTAAAGT-TTGAAAGTAAATTTGTCT
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2180976 61 +   4244037 AATAAAAAA----AAAT--TGGTGAAAGCATACTGTGTG-TCAGTAAAGT-TTGAAAGTCAATTTGTCT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2203974 61 +   4569836 AAT-TAAAA----AAAT--TGGTGAAAGCATACTGTGTGTTCAATAAAGT-TTGAAAATAAATTTGTCT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46154402 49 - 159171411 AAA-AAAAG----ATAT--TGGTGAGAGCATTCTGTGTT-------------GGAAAGTAAATTTGTCC
i calJac3.chr5              I 15 C 0
s saiBol1.JH378271           1874559 49 +   3513951 aaa-aaaag----aaaT--TGGTGAGAGCATACTGTGTT-------------TGAAAGCAAATTTGTCC
i saiBol1.JH378271          I 13 C 0
s cebCap1.NW_016107543v1       10113 49 -   4077172 AAA-AAAAG----ATAC--TGGTGAGAGCATACTGTGTT-------------TGAAAGCAAATTTGTCC
i cebCap1.NW_016107543v1    I 2 C 0
s aotNan1.NW_018505111v1        3890 49 -     94492 AAA-AAAAG----AAAT--TGGTGACAGCATACTGTGTT-------------TGAAAGTAAATTTGTCC
i aotNan1.NW_018505111v1    I 4 C 0
s otoGar3.GL873537          22868045 62 +  28711273 AAT-AATAG----AAATTATGGTTAAAGCATACTGGCCT-TCAGAAAAGT-TTAGAAGAGATTTTGTCC
i otoGar3.GL873537          I 2 C 0
s canFam3.chr9              21479630 48 +  61074082 AGT-CTTAA----ACAT-------------TACAGTG-A-TTGGAAATGG-GTGATGGCAAACATTTTT
i canFam3.chr9              I 1 C 0
s dasNov3.JH570468            546498 62 -    852752 ----AATAACTCCATTT--TGTTGAGAGCATGCTGGGTG-TCAGTAAAGTCTAGGAAGTAATTTTGTCC
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e chlSab2.chr16             64946034 69 +  75148670 I
e macNem1.NW_012014910v1     2132305 190 +  10377808 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=2881.000000
s hg38.chr17_JH159148v1_alt    40878 1 +     88070 T
s panTro5.chr17             16351872 1 +  83181570 T
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16256620 1 +  83442489 T
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4103769 1 +   4267968 T
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090318 1 -   2193130 T
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1996825 1 -   8458610 T
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2181037 1 +   4244037 T
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204035 1 +   4569836 T
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46154451 1 - 159171411 C
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1874608 1 +   3513951 C
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       10162 1 -   4077172 C
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        3939 1 -     94492 C
i aotNan1.NW_018505111v1    C 0 C 0
s canFam3.chr9              21479678 1 +  61074082 T
i canFam3.chr9              C 0 I 65
s dasNov3.JH570468            546560 1 -    852752 C
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e otoGar3.GL873537          22868107 0 +  28711273 C
e chlSab2.chr16             64946034 69 +  75148670 I
e macNem1.NW_012014910v1     2132305 190 +  10377808 I
e macFas5.chr16             28052907 0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=107336.000000
s hg38.chr17_JH159148v1_alt    40879 20 +     88070 CTGAAAGATAAGTGAGTTGG
s panTro5.chr17             16351873 20 +  83181570 CTGAAAGATAAGTGAGTTGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16256621 20 +  83442489 CTGAAAGATAAGTGAGTTGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4103770 20 +   4267968 CTGAAAGATAAGTGAGTTGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090319 20 -   2193130 CTGAAAGTTAAGTGAGTTGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1996826 20 -   8458610 CTGAAAGATAAGTGAGTTGG
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2181038 20 +   4244037 CTGAAAGATAAGTGAGTTGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204036 20 +   4569836 CTGAAATATAAGTGAGTTGG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46154452 20 - 159171411 CTGAAAGATAAGTAAGTTGA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1874609 19 +   3513951 CTGAAAGATAAGTTAGTAG-
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       10163 20 -   4077172 CTGAGAGATAAGTTAGTTGG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        3940 20 -     94492 CTGAAAGATAACTTAGTTGG
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            546561 20 -    852752 AGGAAAGTTGGGTCAGTTGA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              21479679 65 +  61074082 I
e otoGar3.GL873537          22868107  0 +  28711273 C
e chlSab2.chr16             64946034 69 +  75148670 I
e macNem1.NW_012014910v1     2132305 190 +  10377808 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=997815.000000
s hg38.chr17_JH159148v1_alt    40899 207 +     88070 GTctgggtgtggtagctcacacctgtaatcccagcactttgggaggctgaggcaggtggatcacctgagggcaggagttccagacaagtctgatcaacatggtgaaaactactaaaaatactaaaaatacaaaaaattagccaggcgtggtggcacaggcatgtaatcccagctactcaggaggctgaggcaggagaatcacttgaa
s panTro5.chr17             16351893 205 +  83181570 ggctgggtgtggtagctcacacctgtaatcccagcactttgggaggctgaggcaggtggatcacctgagggcaggagttccagacaaatctgatcaacatggtgaaaac--ctgtctctactaaaaatacaaaaaattagccaggcgtggtggcacaggcatgtaatcccagctactcaggaggctgaggcaggagaatcacttgaa
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16256641 205 +  83442489 ggctgggtgtggtagctcacacctgtaatcccagcactttgggaggctgaggcaggtggatcacctgagggcaggagttccagacaaatctgatcaacatggtgaaaac--ctgtctctactaaaaatacaaaaaattagccaggcgtggtggcacaggcatgtaatcccagctactcaggaggctgaggcaggagaatcacttgaa
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4103790 205 +   4267968 ggctgggtgtggtagctcacacctgtaatcccagcactttgggaggctgaggcaggtggatcacttgagggcaggagttccagacaagtctgatcaacatggtgaaaac--ctgtctctactaaaaatacaaaaaattagccaggcgtggtggcacaggcatgtaatcccagctactcaggaggctgaggcaggagaatcacttgaa
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090339 205 -   2193130 ggccgggtgtggtggctcacacctgtaatcccagcactttgggaggctgagagaggtggatcacttgagatcaggagctccagacaagcctgatcaacatggtgaaacc--ctgtctctactaaaaatacaaaaaattagccaggtatggtggcacaggcatgtaatcccagctactcaggaggctgaggcaggagaatcacttgaa
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1996846 205 -   8458610 ggctgggcgtggtggctcatacctgtaatcccagcactttgggaggctgaggcaggtggatcacttgaggtcaggagttccagaccaccctgatcaacatggtgaagct--ctgtctctactaaaaatacaaaaaattagccaggcgtggtggcacaggcatgtaatcccagctactaaagaggctgaggcaggagaatcgcttgaa
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2181058 205 +   4244037 ggctgggcgtggtggctcatacctgtaatcccagcactttgggaggctgaggcaggtggatcacttgaggtcaggagttccagaccaccctgatcaacatggtgaagct--ctgtctctactaaaaatacaaaaaattagccaggcgtggtggcacaggcatgtaatcccagctactaaagaggccgaggcaggagaatcgcttgaa
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204056 205 +   4569836 ggctgggcgtggtggctcatacctgtaatcccagcactttgggaggttgaggcaggtggatcacttgaggtcaggagttccagcccaccctgatcaagatgatgaaact--ctgtctctactaaaaatacaaaaatgtagccaggcgtggtggcacaggcatgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaa
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46154472 203 - 159171411 ggttgggcacggtggctcacgcctataatcccaatattttggggggttgaggtgggtggatcacttgaggtcaggcatttgagaccagcctgatcaacatggtgaaact--ccatgtctactaaaaat--aaaaaattagtcaggcgtggtggaataggcctgtaatcccagctagttgggaggctgaggcaggagagttggttgat
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1874628 205 +   3513951 ggccgggcagggtggctcacacctctaatcccagtattttggggggttgaagtgggtgaatcacttgagatcaggtgtttgagaccagcctgatcaacatggtgaaaat--ccatctttactaaaaatacaaaaaattagccaggcatggtggaacagacctgtcatcccagctagttgggaggttgaggcaggagaattggttgaa
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       10183 204 -   4077172 Agccgggctgggtggctca-aactgtaatcccaatattttgcagggctcagctgggtaaatcacttgaggtcaggtgtttgagaccagcctgatcaacatggtgaaact--ccgtctatactaaaaatacaaaaaattagccaggcatggtggaacaggtctgtaatcccagctagttgcgaggctgaggcaggagaattggttgaa
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        3960 205 -     94492 ggctgggcagggtgactcacgcctgtaatcccaatattctgggtggctcaggttggtgaatgacttgaggtcaggtgtttgagaccagcctgattaacatggtgaaact--ctgtctctactaaaaatagaaaaaattggccagtcgtggtggaacaggcctgtaatcccagctagttgggaggctgaggcaggataattggttgaa
i aotNan1.NW_018505111v1    C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              21479679  65 +  61074082 I
e dasNov3.JH570468            546581   0 -    852752 C
e otoGar3.GL873537          22868107   0 +  28711273 C
e chlSab2.chr16             64946034  69 +  75148670 I
e macNem1.NW_012014910v1     2132305 190 +  10377808 I
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=287792.000000
s hg38.chr17_JH159148v1_alt    41106 70 +     88070 cccagaagatggaggttgcagcgagccgagagcgtgctactgcactccagcctgggtg--acagtgaggctc
s panTro5.chr17             16352098 70 +  83181570 cccaggagatggaggttgcagcgagccgagagcgtgctactgcactccagcctgggtg--acagcgaggctc
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16256846 70 +  83442489 cccaggagatggaggttgcagtgagctgagagcgtgctactgtactccagcctgggtg--acagcgaggctc
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4103995 70 +   4267968 cccaggagatggaggttgcagcgagccgagagcgtgctactgcactccagcctgggtg--acagcgaggctc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090544 70 -   2193130 cccaggagacagaggttgcagtgagccgagagcgtgctactgcactccagcctgggtg--acagcgaggctc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1997051 72 -   8458610 cctgggatgcagaggctgcattgagccgagagtgtgctacagcactccagcctgggcgacacagcaaggctc
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2181263 72 +   4244037 cctgggatgcagaggctgcattgagccgagagtgtgctacagcactccagcctgggcgacacagcaaggctc
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204261 72 +   4569836 cctcggaggtagaggctgcagtgagccaagagtgtgctaccgctctccagcctgggcaacacagcaaggctc
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46154675 72 - 159171411 cctgggaggcaaaggttacagtgagctaaaatcatgctactgtactccagcctgggtgatagagtgagaatc
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1874833 72 +   3513951 cctgggaggcagaggttacagtgagccaaaatcaagctactgcactccagcctgggtgacaaagtgagactc
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       10387 72 -   4077172 cctgggagacagaggttacagtgagccaagatcacgctactgtactccaccctgggtgacagagtgagactc
i cebCap1.NW_016107543v1    C 0 I 23
s aotNan1.NW_018505111v1        4165 72 -     94492 cctgggaggcagaggttacagtgagccaagatcacgctattgcactccagcctgggtgacagagtgagaata
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22868107 10 +  28711273 CCCATAAGAT--------------------------------------------------------------
i otoGar3.GL873537          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              21479679 65 +  61074082 I
e dasNov3.JH570468            546581  0 -    852752 C
e chlSab2.chr16             64946034 69 +  75148670 I
e macNem1.NW_012014910v1     2132305 190 +  10377808 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=35423.000000
s hg38.chr17_JH159148v1_alt    41176 20 +     88070 cgtctca-----aaagaaaaaaaaG
s panTro5.chr17             16352168 20 +  83181570 cgtctca-----aaagaaaaaaaaa
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16256916 20 +  83442489 cgtctca-----aaagaaaaaaaaa
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104065 20 +   4267968 cgtctca-----aaagaaaaaaaaa
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090614 20 -   2193130 tgtctca-----aaagaaaaaaaaa
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1997123 18 -   8458610 catctca-----aaagaaaaaaa--
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2181335 18 +   4244037 catctca-----aaagaaaaaaa--
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204333 18 +   4569836 catctca-----aaagaaaaaaa--
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46154747 15 - 159171411 tgtctca------aaaaaaaa----
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1874905 16 +   3513951 tgtctca-----gaaaagaaa----
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018505111v1        4237 21 -     94492 tgtttcaaaaaaaaaaaaaaa----
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22868117  2 +  28711273 -------------------AA----
i otoGar3.GL873537          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e cebCap1.NW_016107543v1       10459 23 -   4077172 I
e canFam3.chr9              21479679 65 +  61074082 I
e dasNov3.JH570468            546581  0 -    852752 C
e chlSab2.chr16             64946034 69 +  75148670 I
e macNem1.NW_012014910v1     2132305 190 +  10377808 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=27885.000000
s hg38.chr17_JH159148v1_alt    41196 10 +     88070 GTCAGTTGAG
s panTro5.chr17             16352188 10 +  83181570 GTCAGTTGAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16256936 10 +  83442489 GTCAGTTGAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104085 10 +   4267968 GTCAGTTGAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090634 10 -   2193130 GTCAGTTGAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1997141 10 -   8458610 GTCAGTTGGG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946103 10 +  75148670 GTCAGTTGAG
i chlSab2.chr16             I 69 C 0
s manLeu1.NW_012106252v1     2181353 10 +   4244037 GTCAGTTGGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204351 10 +   4569836 GTCAGTTGGG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46154762  6 - 159171411 GTGAGA----
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1874921  6 +   3513951 GTCAGA----
i saiBol1.JH378271          C 0 C 0
s aotNan1.NW_018505111v1        4258  6 -     94492 GTGAGA----
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22868119 10 +  28711273 GTCATTTGAT
i otoGar3.GL873537          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e cebCap1.NW_016107543v1       10459 23 -   4077172 I
e canFam3.chr9              21479679 65 +  61074082 I
e dasNov3.JH570468            546581  0 -    852752 C
e macNem1.NW_012014910v1     2132305 190 +  10377808 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=9236.000000
s hg38.chr17_JH159148v1_alt    41206 4 +     88070 CAGA
s panTro5.chr17             16352198 4 +  83181570 CAGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16256946 4 +  83442489 CAGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104095 4 +   4267968 TAGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090644 4 -   2193130 CAGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1997151 4 -   8458610 CAGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946113 4 +  75148670 CAGA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2181363 4 +   4244037 CAGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204361 4 +   4569836 CAGA
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22868129 3 +  28711273 AAA-
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            546581 4 -    852752 CAGT
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e aotNan1.NW_018505111v1        4264 0 -     94492 C
e cebCap1.NW_016107543v1       10459 23 -   4077172 I
e canFam3.chr9              21479679 65 +  61074082 I
e saiBol1.JH378271           1874927 0 +   3513951 C
e calJac3.chr5              46154768 0 - 159171411 C
e macNem1.NW_012014910v1     2132305 190 +  10377808 I
e macFas5.chr16             28052907 0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=91739.000000
s hg38.chr17_JH159148v1_alt    41210 13 +     88070 AGGTTGTTGTGTG
s panTro5.chr17             16352202 13 +  83181570 AGGTTGTTGTGTG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16256950 13 +  83442489 AGGTTGTTGTGTG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104099 13 +   4267968 AGGTTGTTGTGTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090648 13 -   2193130 AGGTCGTTTTGTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1997155 13 -   8458610 AGATTGTTGTGTG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946117 13 +  75148670 AAGTTGTTGTGAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2181367 13 +   4244037 AGATTGTTGTGTG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204365 13 +   4569836 AGATTGTTGTGTG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46154768 13 - 159171411 ATGTCGTTGTGTT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1874927 13 +   3513951 AGATTGCTGTATA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       10482 13 -   4077172 AGGTTGTTGTGTT
i cebCap1.NW_016107543v1    I 23 C 0
s aotNan1.NW_018505111v1        4264 13 -     94492 AGGTTGTTGTGTA
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22868132 13 +  28711273 AGATTGTTGTGTG
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            546585 13 -    852752 AGGTTGGTCTGTG
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e canFam3.chr9              21479679 65 +  61074082 I
e macNem1.NW_012014910v1     2132305 190 +  10377808 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=110260.000000
s hg38.chr17_JH159148v1_alt    41223 13 +     88070 AGGATGATGGTCC
s panTro5.chr17             16352215 13 +  83181570 AGGATGATGGTCC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16256963 13 +  83442489 AGGATGATGGTCC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104112 13 +   4267968 AGGATGATGGTCC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090661 13 -   2193130 AGGATGATGGTCC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1997168 13 -   8458610 AGGATGATGGTCC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946130 13 +  75148670 AAGATAGTGGTTC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2181380 13 +   4244037 AGGATGATGGTCC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204378 13 +   4569836 AGGATGATGGTCC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46154781 13 - 159171411 AGGATGATGGTCC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1874940 13 +   3513951 AGGATGATGGTCC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       10495 13 -   4077172 AGGATGATGGTCC
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        4277 13 -     94492 AGGATAGTGGTCC
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22868145 13 +  28711273 ATGATGATGGTCT
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              21479744 13 +  61074082 AAGAGAGTGGTCC
i canFam3.chr9              I 65 I 17134
s dasNov3.JH570468            546598 13 -    852752 CACTTGGTGATCT
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e macNem1.NW_012014910v1     2132305 190 +  10377808 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=83736.000000
s hg38.chr17_JH159148v1_alt    41236 16 +     88070 TCTGTGGTGCTGCTCA
s panTro5.chr17             16352228 16 +  83181570 TCTGTGGTGCTGCTCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16256976 16 +  83442489 TCTGTGGTGCTGCTCA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104125 16 +   4267968 TCTGTGGTGCTGCTCA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090674 16 -   2193130 TCTGCGGTGCTGCCCA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1997181 16 -   8458610 TCTGCCGTGCTGCTCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946143 16 +  75148670 TCTTGGGAATTGATCA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2181393 16 +   4244037 TCTGCCGTGCTGCTCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204391 16 +   4569836 TCTGCCGTGCTGCTCA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46154794 16 - 159171411 TTGTCAGGGCTGATCA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1874953 16 +   3513951 TTGGCAATGCTGATCA
i saiBol1.JH378271          C 0 T 12186
s cebCap1.NW_016107543v1       10508 16 -   4077172 TTGGCAGTGCTGATCA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        4290 16 -     94492 TTGGCAGTGCTGATCA
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22868158 16 +  28711273 TTTGGAGAGTGGATCA
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              21496891 16 +  61074082 TATGGCAAGTTGCTCA
i canFam3.chr9              I 17134 C 0
s dasNov3.JH570468            546611 15 -    852752 -TTGGCGAGTTGATCA
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e macNem1.NW_012014910v1     2132305 190 +  10377808 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=127287.000000
s hg38.chr17_JH159148v1_alt    41252 15 +     88070 GCAACAAGAATGCTG
s panTro5.chr17             16352244 15 +  83181570 GCAACAAGAATGCTG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16256992 15 +  83442489 GCAACAAGAATGCTG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104141 15 +   4267968 GCAACAAGAATGCTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090690 15 -   2193130 GCAACAAGAAGGCTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1997197 15 -   8458610 GCAACAAGAAGGCTG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64946159 15 +  75148670 GCAGCAAGAAGGCTG
i chlSab2.chr16             C 0 I 26412
s manLeu1.NW_012106252v1     2181409 15 +   4244037 GCAACAAGAAGGCTG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204407 15 +   4569836 GCAACAAGAAGGCTG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46154810 15 - 159171411 GCAGCAGCAGGGCTG
i calJac3.chr5              C 0 I 27
s saiBol1.JH378271           1862783 15 +   3513951 GCAGCAGCAAGGCGG
i saiBol1.JH378271          T 12186 I 42
s cebCap1.NW_016107543v1       10524 15 -   4077172 GCACCAGGAAGGCTG
i cebCap1.NW_016107543v1    C 0 I 42
s aotNan1.NW_018505111v1        4306 15 -     94492 GCAGCAGCAAGGCTG
i aotNan1.NW_018505111v1    C 0 I 42
s otoGar3.GL873537          22868174 15 +  28711273 GCAGCGGGAAGGCTG
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              21496907 15 +  61074082 GCAGCAGCAAGGCTG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            546626 15 -    852752 GCAGCAGGAAGGCTG
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22147409 13865 - 122082543 T
e macNem1.NW_012014910v1     2132305 190 +  10377808 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=1227547.000000
s hg38.chr17_JH159148v1_alt    41267 144 +     88070 ------------------------------------------------------------GCAGCAGCTGGACACACAGCAGGCTGGGCAGTAGCA------------------GGGCTGGCAGCAGCTGGATCCACAGC-TCTGGTTGAGGCAACCAGGCAGGCAGACAGTCGTGGGGTGGTAGCAGGTTCTTCTGCAGTACACAGGTGCACAG------------GAGCTGCT---
s panTro5.chr17             16352259 144 +  83181570 ------------------------------------------------------------GCAGCAGCTGGACACACAGCAGGCTGGGCAGTAGCA------------------GGGCTGGCAGCAGCTGGATCCACAGC-TCAGGTTTAGGCAACCACGCAGGCAGACACTCGTGGGGTGGTAGCAGGTTCTTCTGCAGTACACAGGTGCACAG------------GAGCTGCT---
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16257007 144 +  83442489 ------------------------------------------------------------GCAGCAGCTGGACACACAGCAGGCTGGGCAGTAGCA------------------GGGCTGGCAGCAGCTGGATCCACAGC-TCAGGTTTAGGCAACCAGGCAGGCAGACACTCGTGGGGTGGTAGCAGGTTCTTCTGCAGTACACAGGTGCACAG------------GAGCTGCT---
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104156 144 +   4267968 ------------------------------------------------------------GCAGCAGCTGGACACACAGCAGGCTGGGCAGTAGCA------------------GGGCTGGCAGCAGCTGTATCCACAGC-TCAGGTTTAGGCAACCAGGCAGGCAGACACTTGTGGGGAGGTAGCAGGTTCTTCTGCAGTACACAGGTTCACAG------------GAGCTGCT---
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090705 144 -   2193130 ------------------------------------------------------------GCAGCAGCTGGACACACAGCAGGCTGGGCGGCAGCA------------------GGGCTGGCAGCAGCTGGATCCACAGC-TCAGGTCTAGGCAACCAGGCAGGCAGACACTTGTGGGGTGGTAGCAGGTTCTTCTGCAGTACACAGGTGCACAG------------GAGCTGCT---
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2132495 144 +  10377808 ------------------------------------------------------------GCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCA------------------GGGCTGGCAGCAGCTGGATCCATAGC-TCTGGTTTAGGCAACCAGGCAGGCAGACACTTGTGGGGTGGTAGCAGGTTCTTCTGCAGTAGACAGGTGCACAG------------GAGCTGGT---
i macNem1.NW_012014910v1    I 190 C 0
s cerAty1.NW_012006043v1     1997212 144 -   8458610 ------------------------------------------------------------GCAGCAGGTGGACACACAGCAGGCTGGGCGGCAGCA------------------GGGCTGGCAGCAGCTGGATCCACAGC-TCTGGTTTAGGCAACCAGACAGGCAGATGCATGTAGGGTGGTAGCAGGTTCTCCTGCAGTAGACAGGTGCACAG------------GAGCTGGT---
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972586 144 +  75148670 ------------------------------------------------------------GCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCA------------------GGGCTGGCAGCAGCTGGATCCATAGC-TCTGGTTTAGGCAACCAGGCAGGCAGACACATGTAGGGTGGTAGCAGGTTCTTCTGCAGTAGACAGGTGCACAG------------GAGCTGGT---
i chlSab2.chr16             I 26412 C 0
s manLeu1.NW_012106252v1     2181424 144 +   4244037 ------------------------------------------------------------GCAGCAGGTGGACACACAGCAGGCTGGGCGGCAGCA------------------GGACTGGCAGCAGCTGGATCCACAGC-TCTGGTTTAGGCATCCAGACAGGCAGATGCATGTAGGGTGGTAGCAGGCTCTCCTGCAGTAGACAGGTGCTCAG------------GAGCTGGT---
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204422 144 +   4569836 ------------------------------------------------------------GCAGCAGCTGGACACACAGCAGGCTGGGTGGCAGCA------------------GGGCTGGCAGCAGCTGGATCCACAGC-TCTGGTTTAGGCAACCAGGCAGGCAGACGTATGTAGGGTGGTAACAGGTTCTCCTGCAGTACACAGGTGCACAG------------GAGCTGGT---
i colAng1.NW_012122154v1    C 0 I 346
s calJac3.chr5              46154852 144 - 159171411 ------------------------------------------------------------GCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCA------------------GGGCTGGCAGCAGCTGGATCCACAGC-TCTGGTTTAGGCAGCCAGGCAGGCAGACACACGTGGGGTGGTAGCAGGTCCTCGTGCAGTACACAGGTGCACAG------------GAGCTGGT---
i calJac3.chr5              I 27 C 0
s saiBol1.JH378271           1862840 144 +   3513951 ------------------------------------------------------------GCAGCAGGTGGTCTCACAGCAGGCTGGGTGGCAGCA------------------GGGCTGGCAGCAGCTGGATCCACAGC-TCTGGTTCAGGCAACCGGGCAGGCGGACACATGTGGGGTGGTAGCAGGTTCTTGTGCAGTACACAGGGGCACAG------------GAGCTGTT---
i saiBol1.JH378271          I 42 C 0
s cebCap1.NW_016107543v1       10581 144 -   4077172 ------------------------------------------------------------GCAGCAGGTGGTCTCACAGCTGGCTGGGCGGCAGCA------------------GGGCTGGCAGCAGCTGGATCCACAGC-TCTGGTTCAGGCAACCAGGCAGGCAGACACACGTGGGGTGGTAGCAGGTTCTACTGCAGTATACAGGTACACAG------------GAGCTGGT---
i cebCap1.NW_016107543v1    I 42 C 0
s aotNan1.NW_018505111v1        4363 144 -     94492 ------------------------------------------------------------GTAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCA------------------GGGCTGGCAGCAGCTGGATCCACAGC-TCTGGTTTAGGCAACCAGGCAGGCAGACACACGTGGGGTGGTAGCAGGTTCTGCTGCAGTACACAGGTGCACAG------------GAACTGGT---
i aotNan1.NW_018505111v1    I 42 C 0
s otoGar3.GL873537          22868189  94 +  28711273 ------------------------------------------------------------------------------------------------------------------------GCAGCAGCTA--------------GGTTCAGACAGCCAGGCAGGCAGACGCAGGTGGGCTGGTAGCAGGTCCTGGTGCAGTAGACAGGTGCACAGC-------TGCTGGGCTGGC---
i otoGar3.GL873537          C 0 I 52
s mm10.chr11                22133544 121 - 122082543 ------------------------------------------------------------GCAGCAACTGGCCACACA---GGCTGGTTTGCAGCA---------------GGTGGTTTCACAGCAGCTGGGTTGGCAGCAGCTGGT-----CACACAGGTTGGCTTACA-----------GCAGCAGGTGGTCCTGTAGCAGGTGGTTTCACAG-----------------------
i mm10.chr11                T 13865 C 0
s canFam3.chr9              21496922 132 +  61074082 ------------------------------------------------------------GCAGCAGCTAGACACACAGCATGTGGGCTTGCAGCAGGTGGTCCTGCAGCAGGTGGTGTGACAGCACGTTGGGCGGCAGC-A---------GCAA---------------------GGCTGGCAGCAGCTGGACCCGCAGCCACTGGACCCACAG------------CAGCTGGG---
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            546641 216 -    852752 ACAGTAACTGGACGCACAACAAGGGTTGCTGTAGAAGCTGGGCCGGCAGCAGGTGGTCCTGCAGCAGGTGGTCTGACAGCAGGATGGGCGGCAGCA------------------GGGCTGGCAGC---TGGATCCGCAGC-TCTGGGGTTGGCAACCAGGCAAGCAGCAGCATGTTGGGTGGTAGCAGGTTCTCCTGCAGTACACGGGGCCACTGTAAGCAGGCTCGCAGCAGGTTCT
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=335801.000000
s hg38.chr17_JH159148v1_alt    41411 46 +     88070 ----------CTGG-----CCACAGCTGGACCCACAGCTGGTTTGGCCACAGCAGCTGGAC
s panTro5.chr17             16352403 46 +  83181570 ----------CTGG-----CCACAGCTGGACCCACAGCTGGTTTGGCCACAGCAGCTGGAC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16257151 46 +  83442489 ----------CTGG-----CCACAGCTGGACCCACAGCTGGTTTGGCCACAGCAGCTGGAC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104300 46 +   4267968 ----------CTGG-----CCACAGCTGGACCCACAGCTGGTTTGGCCACAGAAGCTGGAC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090849 46 -   2193130 ----------ATGG-----CCATAGCTGGACCCACAGCTGGTTTGGCCACAGCAGCTGGAC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2132639 46 +  10377808 ----------CTGG-----CCACAGCTGGACCCACAGCTGGTTTGGCCACAGCAGCTGGAC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997356 34 -   8458610 ----------TTGG-----------------CCACAGCTGGTTTGGCCACAGCAGCTGGAC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972730 46 +  75148670 ----------CTGG-----CCACAGCAGGACCCACAGCTGGTTTGGCCACAGCAGCTGGAC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2181568 34 +   4244037 ----------TTGG-----------------CCACAGCTGGTTTGGCCACAGTAGCTGGAC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204912 46 +   4569836 ----------CTGG-----CCACAGCTGGACCCACAGTTGGCTTGCCCACAGCAGCTGGAC
i colAng1.NW_012122154v1    I 346 C 0
s calJac3.chr5              46154996 46 - 159171411 ----------CTGA-----CCACAGCTGGAGCCACAGCTGGTTTGGCCACAGCAGCTGGAC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1862984 46 +   3513951 ----------CTGA-----CCACAGCTGGACCCACAGCTGGTTTGGCCACAGCAGCTGGAC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       10725 34 -   4077172 ----------CTG-----------------GCCACAGCTGGTTTGGCCACAGCAGCTGGAC
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        4507 34 -     94492 ----------CTG-----------------GCCACAGCTGGTTTGGCTACAGCAGCTGGAC
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22868335 43 +  28711273 ----------CTTA-----CAGCAGGTGGTTGGACAGCAGGTTGGAAGGCAGCAGCTT---
i otoGar3.GL873537          I 52 C 0
s mm10.chr11                22133665 39 - 122082543 ----------------------CTGCTGGGCTGACAGCAGGGTGGGCTACAGCAGCTGGTC
i mm10.chr11                C 0 I 105
s canFam3.chr9              21497054 46 +  61074082 ----------CTGG-----CAGCAGCTGGACACACAGCATGTGGGCTTGCAGCACGTGGTC
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            546857 61 -    852752 GTAGCAGTGATTGGGGCAGCAGCAGGTGGATTCACTGCAGGTTTGGCCACAGGAGCTGGAC
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=305933.000000
s hg38.chr17_JH159148v1_alt    41457 32 +     88070 CCACAGCAGATGGGCTGGTAGCAGGGTGTGCT
s panTro5.chr17             16352449 32 +  83181570 CCACAGCAGGTGGGCTGGCAGCAGGGTGTGCT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16257197 31 +  83442489 CCACAGCAGGT-GGCTGGTAGCAGGGTGTGCT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104346 32 +   4267968 CCACAGCAGGTGGGCTGGTAGCAGGGTATGCT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090895 32 -   2193130 CCATAGCAGGTGGGCTGGTAGCACGGTGTGCT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2132685 32 +  10377808 CCACAGCAGGTGGGCTGGCAGCAGGGTGTGCT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997390 32 -   8458610 CCACAGCAGGTGGGCTGGCAGCAGGGTGTGCT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972776 12 +  75148670 CCACAGCAGGTG--------------------
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2181602 32 +   4244037 CCACAGCAGGTGGGCTGGCAGCAGGGTGTGCT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204958 32 +   4569836 CCAAAGCAGGTGGGCTGGCAGCAGGGTGTGCT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46155042 32 - 159171411 CCACAGCAGGTGGGCTGGCAGCAGGATGTGCT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1863030 32 +   3513951 CCACAGCATGTGGGCTGGCAGCAGGGTGTGCT
i saiBol1.JH378271          C 0 I 11907
s cebCap1.NW_016107543v1       10759 32 -   4077172 CCACAGCAGGTGGGCTGGCAGCAGGATGTGCT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        4541 32 -     94492 CCGCAGCAGGTGGGCTGGCAGCAAGGTGTGCT
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22868378 27 +  28711273 -----CCAGTGGGGCTGGCAACAGGGTGTGCT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22133809 32 - 122082543 TCACAGCAGCTGGGCTGGCAACAGGGTGGGCT
i mm10.chr11                I 105 C 0
s canFam3.chr9              21497100 32 +  61074082 CTGCAGCAGGTGGTGTGACAGCACGTTGGGAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            546918 32 -    852752 CCACAGCGGGTCGACTGACAGCAGGGAGTGGT
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=553649.000000
s hg38.chr17_JH159148v1_alt    41489  58 +     88070 GCAGCAGGAA---------------------------------------------------------GGCTGGCAGCAGCTGGTCACACAG---GTGGGCTGGCAGCAGGTGGTCCTG
s panTro5.chr17             16352481  58 +  83181570 GCAGCAGGAA---------------------------------------------------------GGCTGGCAACAGCTGGTCACACAG---GTGGGCTGGCAGCAGGTTGTCCTG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16257228  58 +  83442489 GCAGCAGGAA---------------------------------------------------------GGCTGGCAACAGCTGGTCACACAG---GTGGGCTGGCAGCAGGTGGTCCTG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104378  85 +   4267968 GCAGCAGGAA------------GGCTGGCAACAGCTGGTCACACA------------------GGTGGGCTGGCAACAGCTGGTCACACAG---GTGGGCTGGCAGCAGGTGGTCCTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090927  58 -   2193130 GCAGCAGGAA---------------------------------------------------------GGCTGGCAGCAGCTGGTCACACAG---GTGGGCTGGCAGCAGGTGGTCCTA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2132717  58 +  10377808 GCAGCAGGAA---------------------------------------------------------GGCTGGCAGCAGCTGGTCACACAG---GTGGGCTGGCAGCAGGTGGTTCTA
i macNem1.NW_012014910v1    C 0 I 126
s cerAty1.NW_012006043v1     1997422  58 -   8458610 GCAGCAGGAA---------------------------------------------------------GGCTGGCAGCAGCTGGTCACACAA---ATGGGCTGGCAGCAGGTGGTTCTA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972788  48 +  75148670 -------------------------------------------------------------------GGCTGGCAGCAGCTGGTCACACAG---GTGGGCTGGCAGCAGGTGGTCCTA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2181634  58 +   4244037 GCAGCAGGAA---------------------------------------------------------GGCTGGCAGCAGGTGGTCACACAA---ATGGGCTGGCAGCAGGTGGTCCTA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2204990  52 +   4569836 GCAGCAGGAA---------------------------------------------------------GTCCGGCAGCAGCTGGTCACACAG---ATGGGCTGGCAGCAGGTG------
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46155074  58 - 159171411 GCAGCAGGAA---------------------------------------------------------GGCTGGCAGCAGCTGGTCACACAG---GTGGGCTGGCAGCAGGTGGTCCTG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1874969  58 +   3513951 GCAGCAGGAA---------------------------------------------------------GGCTGGCAGCAGCTGGTTACACAG---GTGGGCTGGCAGCAAGTGGTCCTG
i saiBol1.JH378271          I 11907 C 0
s cebCap1.NW_016107543v1       10791  58 -   4077172 ACAGCAGGAA---------------------------------------------------------GGCTGGCAGCAGCTGGTCACACAG---GTGGGCTGGCAGCAGGTGGTCCTG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        4573  85 -     94492 GCAGCACGAA------------GGCTGGCAGCAGCTGGTCACACA------------------GGTGGGCTGGCAGCAGCTGGTCACACAG---GTGGGCTGGCAGCAGGTGGTCCTG
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22868405  43 +  28711273 ------------------------------------------------------------------------GCAGTAGGTGGTCTCACAT---GTTGGCCACCAGCAGGTGGTCCTG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22133841 100 - 122082543 GCAGCAGCTAGTTATACAGATTGGCTTATAGCAGGTGGTTTCACA--CAT-------------GCTGGGCTGGCAGCAGCTGTTTATACTG---GTTGGCTTACAGCAGGTGGTCCTA
i mm10.chr11                C 0 C 0
s canFam3.chr9              21497132 106 +  61074082 GCAGCAGCAA------------GGCTGGCAGCAGCTGGACCCGCAGCCACTGGACCCACAGCAGCTTGGCTGGCAGCAGCTGGACACACAGCATGTGGGCTTGCAGCAGGTGGTCCTG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            546950  58 -    852752 GCAGCAGGAA---------------------------------------------------------GGTTGGCAGCAGCTGGTCACACAG---GTTGGCCGGCAGTAGGTGGTCCTA
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=674328.000000
s hg38.chr17_JH159148v1_alt    41547 61 +     88070 CAGCAGGTGTTTTGACAGCAAGTTGGGTGGCAGTAAGGCTGGCAGCAGCTGGACACACAGC
s panTro5.chr17             16352539 61 +  83181570 CAGCAGGTGTTTTGACAGCAAGTTGGGTGGCAGCAAGGCTGGCAGCAGCTGGACACACAGC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16257286 61 +  83442489 CAGCAGGTGTTTTGACAGCAAGTTGGGTGGCAGCAAGGCTGGCAGCAGCTGGACACACAGC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104463 61 +   4267968 CAGCAGGTGTTTTGACAGCAAGTTGGGTGGCAGCAAGGCTGGCAGCAGCTGGACACACAGC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2090985 61 -   2193130 CAGCAGGTGTTTTGACAGCAAGTTGGGTGGCAGCAAGGCTGGCAACAGCTGGACACACAGC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2132901 61 +  10377808 CAGCAGGTGTTTTGACAGCAAGTTGGGCGGCAGCAAGGCTGGCAGCAGCTGGACACACAGC
i macNem1.NW_012014910v1    I 126 C 0
s cerAty1.NW_012006043v1     1997480 61 -   8458610 CAGCAGGTGTTTTGACAGCAAGTTGGGTGGCAGCAAGGCTGGCAGCAGCTGGACACACAGC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972836 61 +  75148670 CAGCAGGTGTTTTGACAGCAAGTTGGGCGGCAACAAGGCTGGCAACAGCTGGACACACAGC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2181692 61 +   4244037 CAGCAGATGTTTTGACAGCAAGTTGGGTGGCAGCAAGGCTGGCAGCAGCTGGACACACAGC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205042 52 +   4569836 ---------TTTTGACAGCAAGTTGGGCGGCAGCAAGGCTGGCAGCAGCTGGACACACAGC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46155132 61 - 159171411 CAGCAGGTGTTTTGACAGCAAGTTGGGCGGCAGCAAGGCTGGCAGCAGCTGGACACACAGC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1875027 61 +   3513951 CAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAGGGCTGGCAGCAGCTGGATCCACAGC
i saiBol1.JH378271          C 0 T 6403
s cebCap1.NW_016107543v1       10849 61 -   4077172 CAGCAGGTGTTTTGACAGCAAGTTGGGCGGCAGCAAGGCTGGCAGCAGCTGGACACACAGC
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        4658 61 -     94492 CAGCAGGTGTTTTGACAGCAAGTTGGGTGGCAGCAAGGCTGGCAGCAGCTGGACACACAGC
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22868448 61 +  28711273 CGGCAGGTGGTTGGACAGCAAGTTGGGCGGCAGCAGGGCTGGAGGCAGCTGTACTCATAGC
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22133941 19 - 122082543 CAGCAGGTGGTTTCACAGC------------------------------------------
i mm10.chr11                C 0 C 0
s canFam3.chr9              21497238 61 +  61074082 CAGCAGGTGGTATGACAGCATGTTGGGCGGCAGCAAGGCTGGCAGCAGCTGGACCCACAGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            547008 57 -    852752 CAGCAGGTGGTCTGACAGCAGAGTGGGCGGCAGCAAGGCTGGCAGCAGCTGGACCCA----
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=675760.000000
s hg38.chr17_JH159148v1_alt    41608  74 +     88070 AGGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGGTGGT-------CACAATGG-----------------------------------------TGGGCTGCCAGCAGGTAGTCCTGCAGCAA
s panTro5.chr17             16352600  74 +  83181570 AGGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGGTGGT-------CACAATGG-----------------------------------------TGGGCTGCCAGCAGGTAGTCCTGCAGCAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16257347  74 +  83442489 AGGAGGGCTGTCAGCAGGGTGTGCTGCTGCAGGTGGT-------CACAATGG-----------------------------------------TGGGCTGCCAGCAGGTAGTCCTGCAGCAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104524  74 +   4267968 AGGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGGTGGT-------TACAATGG-----------------------------------------TGGGCTGCCAGCAGGTAGTCCTGCAGCAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2091046  74 -   2193130 AGGTGGGCTGGCAGCAGGGTGTGCTGCTGCAGGTGGT-------CACAATGG-----------------------------------------TGGGCTTCCAGCAGGTAGTCCTGCAGCAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2132962  74 +  10377808 AGGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGGTGGT-------CACACAGG-----------------------------------------TGGGCTTCCAGCAGGTGGTCCTGCAGCAG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997541  74 -   8458610 AGGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGGTGGT-------CACAGTGG-----------------------------------------TGGGCTTCCAGCAGGTGGTCCTGTGACAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972897  74 +  75148670 AGGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGGTGGT-------CACACAGG-----------------------------------------TGGGCTTCCAGCAGGTGGTCCTGCAGCAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2181753  74 +   4244037 TGGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGGTGGT-------CACAGTGG-----------------------------------------TGGGCTTCCAGCAGGTGGTCCTGTGACAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205094  74 +   4569836 AGGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGGTGGT-------CACACAGG-----------------------------------------TGGGCTTCCAGCAGGTGGTCCTGCAGCAG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46155193  74 - 159171411 AGGAGGGCTGGCAGCAGGGTGTGCTGCAGCAGCTGGT-------CACACAGG-----------------------------------------TGGGCTTCCAGCAGGTGGTCCTGCAGCAG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868685  74 +   3513951 AGGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGCTGGT-------CACACAGG-----------------------------------------TGGGCTTCCAGCAGGTAGTCCTGCAGCAG
i saiBol1.JH378271          T 6403 C 0
s cebCap1.NW_016107543v1       10910  74 -   4077172 AGGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGCTGGT-------CACACAGG-----------------------------------------TGGGCTTCCAGCAGGTGGTCCTGCAGCAG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        4719  74 -     94492 AAGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGGTGGT-------CACACAGG-----------------------------------------TGGGCTTCCAGCAGGTGGTCCTGCAGCAG
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22868509  74 +  28711273 AGCTGGGCTGGCAGCAGGGTGTGCTGCAACAGGTGGC-------CTCACAGG-----------------------------------------TGGGCTGCCAGTAGATGGTCCTGCAGCAG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22133960  71 - 122082543 AGCTGGGCTGGTAGCGGGATGGACTGCAAC---TGGT-------CACATAGG-----------------------------------------TTGGTCTGCAGCAGGTAGTCCTGCAGCAA
i mm10.chr11                C 0 I 4
s canFam3.chr9              21497299 122 +  61074082 ATGTGGGCTTACAGCTCGAGGTCCTGCAGGAGGTGGTGTGACAGCACGTTGGGAGGCAGCAGCAAGGCTCACAGCAGCTGGATCCACAGCATCTGGGCTCGCAGCAGGTGGTCCTGTTGCAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            547065   6 -    852752 --------------------------------------------------------------------------------------------------------CAAGAA------------
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=132596.000000
s hg38.chr17_JH159148v1_alt    41682 16 +     88070 GTGGTC---------------------------------------------CTGCAGCAGG
s panTro5.chr17             16352674 16 +  83181570 GTGGTC---------------------------------------------CTGCAGCAGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16257421 16 +  83442489 GTGGTC---------------------------------------------CTGCAGCAGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104598 16 +   4267968 GTGGTC---------------------------------------------CTGCAGCATG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2091120 16 -   2193130 GTGGTC---------------------------------------------CTGCAGCATG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2133036 16 +  10377808 GTGGTC---------------------------------------------CTGCAGCACG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997615 16 -   8458610 GTGGTC---------------------------------------------CTGCAGCACG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972971 16 +  75148670 GTGGTC---------------------------------------------CGGCAGCACG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2181827 16 +   4244037 GTGGTC---------------------------------------------CTGCAGCACG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205168 16 +   4569836 GTGGTC---------------------------------------------CTGCAGCACG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46155267 16 - 159171411 GTGGTC---------------------------------------------CGGCAGCACG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1868759 16 +   3513951 GTGTTT---------------------------------------------TGACAGCAAG
i saiBol1.JH378271          C 0 I 6764
s cebCap1.NW_016107543v1       10984 16 -   4077172 GTGGTC---------------------------------------------CTGCAGCAGG
i cebCap1.NW_016107543v1    C 0 I 60
s aotNan1.NW_018505111v1        4793 16 -     94492 GTGGTC---------------------------------------------CTGCAGCACG
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22868583 61 +  28711273 GTGGTTAGACAGCAAGCTGGGTGGCAGCAGCTGGGCTGGCAGCAGGGCGTGCTGCAGCAGG
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              21497421 16 +  61074082 GTGGTC---------------------------------------------TTGCAGCACG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            547071 16 -    852752 CTGGAC---------------------------------------------CCACAGCAGG
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22134031  4 - 122082543 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=33255.000000
s hg38.chr17_JH159148v1_alt    41698 3 +     88070 TAG
s panTro5.chr17             16352690 3 +  83181570 TAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16257437 3 +  83442489 TAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104614 3 +   4267968 TAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2091136 3 -   2193130 TAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2133052 3 +  10377808 TAG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997631 3 -   8458610 TAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972987 3 +  75148670 TAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2181843 3 +   4244037 TAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205184 3 +   4569836 TAG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46155283 3 - 159171411 TAG
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1875539 3 +   3513951 TAG
i saiBol1.JH378271          I 6764 C 0
s cebCap1.NW_016107543v1       11060 3 -   4077172 TAG
i cebCap1.NW_016107543v1    I 60 C 0
s aotNan1.NW_018505111v1        4809 3 -     94492 TAG
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22868644 3 +  28711273 TGG
i otoGar3.GL873537          C 0 C 0
s canFam3.chr9              21497437 3 +  61074082 TGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            547087 3 -    852752 TGG
i dasNov3.JH570468          C 0 C 0
e mm10.chr11                22134031 4 - 122082543 I
e macFas5.chr16             28052907 0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=1550367.000000
s hg38.chr17_JH159148v1_alt    41701 149 +     88070 GCTGACAGCCAGGGGAGCAAC---AGTGGGTCATGTTGTCAGGGGTGGAGG-GTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGGAT----TTGATGACCCCTTGCAATCTGGACCTTTTATACATGTGGC--------CTCCAAAGTTTCCACCAATCAGCAGGA
s panTro5.chr17             16352693 149 +  83181570 GCTGACAGTGAGGGGAGCAAC---AGTGGGTCATGGTGTCAGGGGTGGAGG-GTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGGAT----TTGATGACCCCTTGCAATCTGGACCTTTTATACATGTGGC--------CTCCAAAGTTTCCACCAGTCAGCAGGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16257440 149 +  83442489 GCTGACAGTGAGGGGAGCAAC---AGTGGGTCATGGTGTCAGGGGTGGAGG-GTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGGAT----TTGATGACCCCTTGCAATCTGGACCTTTTATACATGTGGC--------CTCCAAAGTTTCCACCAGTCAGCAGGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104617 149 +   4267968 GCTGACAGCAAGGGGAGCAAC---AGTGGGTCATGGTGTCAGGGGTGGAGG-GTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGAAT----TTGATGACCCCTTGCAATCTGGACCTTTTATACATCTGGC--------CTCCAAAGTTTCCACCAGTCAGCAGGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2091139 149 -   2193130 GCTGACAGCAAGGGGAACAAC---AGTGGGTCATGGTGTCAGGGGTGGAGG-GTGGACTTCTGTTCAGAGGTGAGTTTCCCAGAAT----TTGATGACCTCTTGCAATCTGGACCTTTTATACGCGTGGC--------CTCCAAAGTTTCCACAAGTCAGCAGGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2133055 149 +  10377808 GCTGACAGCAAGGGGAGCAAC---AGTTGGTCATGGTGTCAGGGGTGGAAG-GTGGGCTTCTATTCAGAGGTGAGTTTCCCAGAAT----GTGATGACCCCTTGCAATCTGGACCTTTTATACACCTGGC--------CTCCAAAGTTTCCACCAATCAGCAGGA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997634 149 -   8458610 GCTGACAGCAAGAGGAGCAGC---AGTGGGTCATGGTGTCAGGGGTGGAAG-GTGAGTTTCTGTTCAGAGGTGAGTTTCCAAGAAT----TTGATGACCCCTTGCAGTCTGGACCTTTTGTAAACCTGGC--------CTCCAAAGTGTCCACCAATCTGCAGGG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972990 149 +  75148670 GCTGGCAGCAAGGGGAGCAAC---AGTGGGTCATGGTGTCAGGGGTGGACG-GTGGGTTTCTATTCAGAGGTGAGTTTCCCAGAAT----CTGATGACCCCTTGCAATCTGGACCTTTTATACACCTGGC--------CTCCAAAGTTTCCACCAATCAGCAGGA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2181846 149 +   4244037 GCTGACAGCAAGAGGAGCAGC---AGTGGGTCATGGTGTCAGGGGTGGAAG-GTGAGTTTCTGTTCAGAGGTGAGTTTCCAAGAAT----TTGATGACCCCTTGCAGTCTGGACCTTTTGTAAACCTGGC--------CTCCAAAGTGTCCACCAATCTGCAGGG
i manLeu1.NW_012106252v1    C 0 I 308
s colAng1.NW_012122154v1     2205187 149 +   4569836 GCTGGCAGCAAGGGGAGCAAC---AGTTGGTCATGGTGTCAGGCGTGAAGG-GTGGGCTTCTGTTCAGAGGTGAATTTCCCAGAAT----CTGATGACCCCTTGCAATCTAGACCTTTTATACACCTGGC--------CTCCAAAGTTTCCACCAATCTGCAGGA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46155286 149 - 159171411 GCTGGCAGCAAGGGGAGCAGC---AGTGGGTCATGATGTCAGAAGTGGACG-GTGGGCTCCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGGTGACTCCTTCCAATCTGGGCCTTTTATACATGTGGC--------CTCCAAAGTTTCCACCAATCAGCAGGA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1875542 149 +   3513951 GCTGGCAGCAAGGGGAGCAGC---AGTGGGTCATGGTGTCAGGGGTGGATG-GTGGGCTCCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGATGACTCCTTCCAATCTGGGCCTTTTATACATCTGGC--------CTCCAACGTTTCCACCAATCAGCAGGA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       11063 149 -   4077172 GCTGGCAGCAAGGGGAGCAGC---AGTAGGTCATGGTGTCAGGGGTGGAGG-GTGGGCTCCTGTTCAGAGGTGAGTTTCCCGGAAT----CTGACGGCTCCTTCCAATCTGGGCCTTTTATACACCTGGC--------CTCCAAAGTTTCCACCAATCAGCAGGA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        4812 149 -     94492 GCTGGCAGCAAGGGGAGCAGC---AGTGGGTCATGGTGTCAGGGGTGGAGG-GTGGGATCCTGTTCAGAGGTGAGTTTCCCAGAAT----TTGATGACCCCCTCTAATCTGGACCTTTTATACATGTGGC--------CTCCAAAGTTTCCACCAATCAGCAGGA
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22868647 146 +  28711273 ACTGGCAGCAAGGGGAGCAGC---AGTGGGTCATGGCGTCCTGTGTGGAGG-GTGGGCTCCTGTTCAGAGGTGAGTGTCCCAGAAT----CTGCTGATGCCTTCCAATGTGGACCTTTTATATACTGGGC--------CTCCGAAGTTTGGACCAATTGGCA---
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22134035 150 - 122082543 GCTGACTGCAAGGGGAGCAGCAAGAGTTGGTCATGGTGTCAAG-ATGGTTG-G-AGGTTCCTGTTAACAGGTGAGTTTCCTACAAT----ATGATGAGTTCTTGCATTCTGGCCATTTTATATGCCAGAC--------CTCCAAGGTTTGGACCAATCAGCAGGA
i mm10.chr11                I 4 C 0
s canFam3.chr9              21497440 165 +  61074082 GCTGGCAGCACGGGGAGCAGCACGATTCACTCATGGTGTCGCCGGGGGAGGCGTGGGCTTCTGTTCTGAGGTGACGTTCTCAGATTCTGACTGATGCCTCCTTCCATTCTGGCGCTTTTATACACTGGACCCCCTCAACCCCAACGTATGGACCAATGGGCAGGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            547090 143 -    852752 GCTGGCAGCAGGGAGAGCAGC---AGGAGGTCATGGTGTCAGGGTTAAAGG---GGGCTCGTGTTCAGAGATG--TTTCCCAGAAT----CCGATGGCTCCTTTAATTCTGTGTCTTTTATAC-CCTGGG--------TCCCAATATTT-GACCAATCAGCAGGT
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=693483.000000
s hg38.chr17_JH159148v1_alt    41850 89 +     88070 TTTTTCTTTCTTGCTGTTTACAG-TTGTTTTCCATAGTCAGTTTG-GCATTGTCAAAGAGGAAGTCATTTCCTAAA-TGTTATGAATCTTTG
s panTro5.chr17             16352842 89 +  83181570 TTTTTCTTTCTTGCTGTTTACAA-TTGTTTTCCATAGTCAGTTTG-GCATTGTCAAAGAGGAAGTCATTTCCTAAA-TGTTATGAATCTTTG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16257589 89 +  83442489 TTTTTCTTTCTTGCTGTTTACAA-TTGTTTTCCATAGTCAGTTTG-GCATTGTCAAAGAGGAAGTCATTTCCTAAA-TGTTATGAATCTTTG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104766 89 +   4267968 TTTTTCTTTCTTGCTGTTTACAA-TTGTTTTCCATAGTCAGTTTG-GCACTGTCAAAGAGGAAATCATTTCCTAAA-TGTTATGAATCTTTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2091288 89 -   2193130 TTTTTCCTTCTTGCTGTTTACAA-TTGTTCTCCATAGTCAGTTTG-GCATTGTCAAAATCGAAGTCATTTCCTAAA-TGTTATGAATCTTTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2133204 88 +  10377808 CTTTTCCTTGTTGCTGTTTAC-A-TTGTTTTTCATACGCACTTTG-CGATCGTCAAAGGGGAAGTTGTTTCTGAAA-TCTTATGAATCTGTT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997783 89 -   8458610 TTTTTCTTTGTTGCTGTTTAC-ACTTGTTTTCTATAGTCAGTTTG-GCATTGTCAAAGAGGAAGTCATTTCCCAAA-TGTTATGAATCTTTG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64973139 88 +  75148670 CTTTTCCTTGTTGCTGTTTAC-A-TTGTTTTTCATACTCCCTTTG-TGATCGTCAAAGGGGAAGTTGTTTCTGAAA-TCTTATGAATCTGTT
i chlSab2.chr16             C 0 T 36763
s manLeu1.NW_012106252v1     2182303 89 +   4244037 TTTTTCTTTGTTGCTGTTTACAA-TTGTTTTCTATAGTCAGTTTG-GCATTGTCAAAGAGGAAGTCATTTCCCAAA-TGTTATGAATCTTTG
i manLeu1.NW_012106252v1    I 308 C 0
s colAng1.NW_012122154v1     2205336 89 +   4569836 TTTTTCTTTGTTGCTGTTTACAA-TTGTTTTCCATAGTCAGTTTG-GCATTGTCAAAGAGGAAGTCATTTCCTAAA-TGTTATGAATCTTTG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46155435 88 - 159171411 CTTTTCCTTGTTGCTGTTTAC-A-TTGTTTTCCACAGTCCGATTG-GGATTGTCAAAGGGGAAGTTGTTTTTGAAA-TCTTATGAATCTTTT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1875691 88 +   3513951 CTTCTCATTGTTGCTGTTTAC-A-TTGTTTTCTATAGTCAGTTTG-GGATTATCAAAGAGGAAGTCATTTACTAAA-TGCTATGAATCTTTT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       11212 88 -   4077172 CTTTTCCTTGTTGCTGTTTAC-A-TTGTTTTCTATAGTCAGTTTG-GGATTATGAAAGAGGAAGTCATTTCCTAAA-TGCTATGAATCTTTT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        4961 86 -     94492 CTGTTCCTTGTTGCTGTTTAC-A-TTGTTTTCTATAGTCAGTTTG-GGATTATCAAAGAGGAAGTCATTTCCTGAA-TGTTATGAATCTT--
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22868793 87 +  28711273 CATTTTTTTCCTGTTGTTTCC-A-TTGTTTTCTATGGTCACTGGGTGAATTATAAAGGAAGAAGTTG--TAGTAAG-TGCTAAGAATATATC
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22134185 83 - 122082543 CTTTTCCTTGATGTTGTTTAC-A-CCATTTTCCATATTCAGTTTG-TGTTTCATAAGGAAGTG-----TTTCTCAA-TGTTATGCATCATTT
i mm10.chr11                C 0 C 0
s canFam3.chr9              21497605 78 +  61074082 --CTTCCCT-----TGTTTAT-A-CCGTTTTCCATAGTCACTGGC-GGCTGGTAGAAGAGGAAGT---TCCCTAAA-TGTTAGGAATCCCTA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            547233 87 -    852752 CTTTTCCCTATTATTG---AC-A-TTGTTTACCTTAGATAGTGGGCAAACTACCAAGGAGGATGTTTTCCCCCAAAGTGTTGTGACTCTTTT
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=604023.000000
s hg38.chr17_JH159148v1_alt    41939 71 +     88070 GAAAGTAAGGGTTTAATCTGTTTCTTAATTGTAAATTACTCGTAGAAA-CTTTGTTTCAGATAAAAGGAAGG
s panTro5.chr17             16352931 71 +  83181570 GAAAGTAAGGGTTTAATCTGTTTCTTAATTGTAAATTACTCGTAGAAA-CTTTGTTTCAGATAAAAGGAAGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16257678 71 +  83442489 GAAAGTAAGGGTTTAATCTGTTTCTTAATTGTAAATTACTCGTAGAAA-CTTTGTTTCAGATAAAAGGAAGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104855 71 +   4267968 GAAAGTAAGGGTTTATTCTGTTTCTTAACTGTAAATTACTCGTAGAAA-CTTTGTTTCAGATAAAAGGAAGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2091377 71 -   2193130 GAAAGTAAGGGTTTAATCTGTTTCTTAATTGTGAATTACTCACAGAAA-CTTTGTTTCAGATAAAAGGAAGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2133292 71 +  10377808 GAAAGTAAGTGTTTAATCTGTTTGTTAATTGAGAATTACTCATAAAAA-CTTCGTTTCAGATAAAAGGAAGT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997872 71 -   8458610 GAAAGTAAGGGTTTAATCTGTTTCTTAATTGTGAATTACTCATAGAAA-CTTTGTTTCAGATAAAAGGAAGG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936464 70 +  75148670 TAAAGTAAGGGTTTAATATGTCTCTTAATTGTG-TTTACTCATAGAAA-CTTTGTTTCAGATAAAAGGAAAC
i chlSab2.chr16             T 36763 C 0
s manLeu1.NW_012106252v1     2182392 71 +   4244037 GAAAGTAAGGGTTTAATCTGTTTCTTAATTGTGAATTACTCATAGAAA-CTTTGTTTCAGATAAAAGGAAGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205425 71 +   4569836 GAAAGTAAGGGTTTAATCTGTTTCTTAATTGTGAATTACTCATAGAAA-CTTTGTTTCAGATAAAAGGAAGG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46155523 72 - 159171411 GAAAGTAAGGGTTTAATCTGTTTCTTAATTGTGAATTACTCACAGAAACTTTTGTTTCAGATAAAAGGAAGC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1875779 71 +   3513951 GAAAGTAAGAGTTTAATCTGTTTCTTACTTGTGAATTACTCATAGAAA-TGTTGTTTTAAGTAAAAGGAAGG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       11300 71 -   4077172 GAAAGTAAGGGTTTAATCTGTTTCTTAATTGTGAATTACTCATAGCAAATGTCATTT-AAGTAAAAGGAAAG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        5047 66 -     94492 -----TAAGGGTTTAATCTGTTTCTTAATTGTGAATTACTCATAGAAA-TGTTGTTTCAAGTAAAAGGAAGG
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22868880 70 +  28711273 AGAAGTAAGTTTTTGATCCGTTTCCTAATTGCTAATAACTCGTAGAAA-CTGT-TTTCAGATAAAAGGAAAG
i otoGar3.GL873537          C 0 I 152
s mm10.chr11                22134268 56 - 122082543 GAAAGT------------TGATTCTTATTCCAGAGTAAATCATGGGAA-CTC--TTTCA-ACAGGGGCAAGG
i mm10.chr11                C 0 C 0
s canFam3.chr9              21497683 67 +  61074082 GAGAATAGGTGCTTAA--CAGTTTTTAATTGAGAGTAACTCATAGGAA-CATTG--TCAGAGGGAAGCAAGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            547320 68 -    852752 CAAAGTAAGTGTTTAATCATTCCCGTCATTGAGA--TATGTATAGAAA-CTGC-TTTCAGTTATGAGGAAGG
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=590762.000000
s hg38.chr17_JH159148v1_alt    42010  73 +     88070 CAGTCTC-----------------------------------------------------------ATCATCAGCTTCGTTCCTGCTCTGACCAGCATCTCGTCATGTGAT--AGTTCCTG----GTGACTGGGGAGG-
s panTro5.chr17             16353002  73 +  83181570 CAGTCTC-----------------------------------------------------------ATCATCAGCTTCGTTCCTGATCTGACCAGCATCTCGTCATGTGAT--AGTTCCTG----GTGACTGGGGAGG-
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16257749  73 +  83442489 CAGTCTC-----------------------------------------------------------ATCATCAGCTTCGTTCCTGCTCTGACCAGCATCTCGTCATGTGAT--AGTTCCTG----GTGACTGGGGAGG-
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104926  73 +   4267968 CAGTCTC-----------------------------------------------------------ATCATCAGCTTCGTTCCTGCTCTGACCAGCATCTCGTCATGTGAT--AGTTCCTG----GTGACTGGGGAGG-
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2091448  73 -   2193130 CAGTCTC-----------------------------------------------------------ATCATCAGCTTCGTTCCTGCTCTGACCATCATCTCGTCATGTGAT--AGTTCCTG----GTGACTGGGGAGG-
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2133363  73 +  10377808 CAGTCTC-----------------------------------------------------------ATTATCAGCATCATTCCTGCTCTGACCATCATCCCGTCATGTGAT--AGTTCCTG----GTGATGTGGGAGG-
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1997943  73 -   8458610 CAGTCTC-----------------------------------------------------------ATCATCGGCTTGGTTCCTGCTCTGACCATCATCTGGTCATGTGAT--AGTTCCTG----GTGACTGGGGAGG-
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936534  73 +  75148670 CTGTCTC-----------------------------------------------------------ATCATCAGCATCGTTTCTGCTCTGACCATCTTCTCATTATGTGTT--TGTTCCTG----GTGACTGGGGAGG-
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2182463  73 +   4244037 CAGTCTC-----------------------------------------------------------ATCATCGGCTTGGTTCCTGCTCTGACCATCATCTGGTCATGTGAT--AGTTCCTG----GTGACTGGGGAGG-
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205496  73 +   4569836 CAGTCTC-----------------------------------------------------------ATCATCAGCTTGGTTCCTGCTCTGACCATCATCTGGTCGTGTGAT--AGTTCCTG----GTGACTGGGGAGG-
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46155595  73 - 159171411 CCGTGTC-----------------------------------------------------------ATCATTAGCATGGTTCCTGCTCTGATTATCTTCTGGTCATGTGAT--AGTTCCTG----GTGACTGGGAAGG-
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1875850  73 +   3513951 CAGTTTC-----------------------------------------------------------ATCAACAGCCTGCTTCCTGCTCTGACCATCATCTTGTCATGTGAT--AGTTCCTG----GTGACCAGGGAGG-
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       11371  73 -   4077172 CCATTTC-----------------------------------------------------------ATCATCAGCCTGCTTCCTACTCTGACCATCATCTTGTCATATGGT--AGTTCCTG----GTGACCAGGGAGG-
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        5113  73 -     94492 CAGTCTC-----------------------------------------------------------ATCATCAACCTGCTTCCTGCTCTGACCATCATCTTGTCATGTGAT--AGTTCCTG----GTGACCAGGGAGG-
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22869102 131 +  28711273 cagcctccctcccccaccaataaagacctttcatacaaAAAAAAAAAAAATAAGGAAAGTGATCATATCATCAGCATCATTCCTGCTGTGGTCATCACCT-GTCCTGTCAT--AATTCCTA----CTGGCCTGGGAGG-
i otoGar3.GL873537          I 152 C 0
s mm10.chr11                22134324  73 - 122082543 GTATTGC-----------------------------------------------------------ACTACCATTCTCGCTGTATCCTTGATCATTATCTGATCATGTGGT--AGGCCTTA----AAATCTTGGGAGA-
i mm10.chr11                C 0 C 0
s canFam3.chr9              21497750  79 +  61074082 TGGTCAC-----------------------------------------------------------ATTAGCAGCCTCGTTCTTGCTTCCGGGGCCGTGGGATCACGTGATGCAGTTCCTGGGACGTGGTTGGTGAGT-
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            547388  72 -    852752 TGGTCAC-----------------------------------------------------------CTCCTCAGCATCATAGCTGCCCTG-TCATCATCT-GCCATGTGCT--AGTTCCCA----CTGGCCTGTGGTGG
i dasNov3.JH570468          C 0 I 4141
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=143551.000000
s hg38.chr17_JH159148v1_alt    42083 22 +     88070 CTCAGGAAGTTCTCTCTGCCCA
s panTro5.chr17             16353075 22 +  83181570 CTCAGGAAGTTCTCTCTGCCCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16257822 22 +  83442489 CTCAGGAAGTTCTCTCTGCCCA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4104999 22 +   4267968 CACAGGAAGTTCTCTCTGCACA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2091521 22 -   2193130 CTCAGGAAATTCTCTCTGCCCA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2133436 20 +  10377808 --CAGATAGTTCTCTCTGCCCC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     1998016 22 -   8458610 CTCAGGAAGTTCTCTCTGCCCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936607 22 +  75148670 TTCAGGAAGTTCTCTCTACCTA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2182536 22 +   4244037 CTCAGGAAGTTCTCTCTGCCCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205569 22 +   4569836 CTCAGGAAGTTCTCTCTGCCCA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46155668 18 - 159171411 CTC---AAGTTCTCTCTAG-TA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1875923 22 +   3513951 CTCAGGAAGTTCTCTCTGTCCA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       11444 22 -   4077172 CTCAAGAAGTTCTCTGTGCCCA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        5186 22 -     94492 CTCAGGAAGTTCTCTCTGCTCA
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22869233 22 +  28711273 GTTTCAAAGTTCTCTCTGCCCA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22134397 17 - 122082543 GTCAGAG-----TATCTGTTTA
i mm10.chr11                C 0 C 0
s canFam3.chr9              21497829 16 +  61074082 C------AGTTTCGTGGTCCTA
i canFam3.chr9              C 0 C 0
e dasNov3.JH570468            547460 4141 -    852752 I
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=1475311.000000
s hg38.chr17_JH159148v1_alt    42105 183 +     88070 GTCTCATC-CTTTGGCTGTATGTAGACTGGGAAGTGTCTGTGGGG------------------------------AGAAGCATGATGTTGATATATTCACAGTGGTGAATTGAATCCATGCTTGGGACCAAGACTGTTCACCCACC--------AAAGTCTGATTCAAGA--CT--GA--TAGGCAT---CTCTCTAT--GTACAACCTACTTTACCTGTCTCTTCCAGTTCT
s panTro5.chr17             16353097 182 +  83181570 GTCTCATC-CTTTGGCTGTATGTAGACTGGGAAGTGTCTGTGGGG------------------------------AGAAGCATGATGTTGATATATTCACAGTGGTGAATTGAATCCATGCTTGGGACCAAGACTGTTCACCCACC---------AAGTCTGATTCAAGA--CT--GA--CAGGCAT---CTCTCTAT--GTACAACCTACTTTACCTGTCTCTTCCAGTTCT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16257844 183 +  83442489 GTCTCATC-CTTTGGCTGTATGTAGACTGGGAAGTGTCTGTGGGG------------------------------AGAAGCATGATGTTGATATATTCACAGTGGTGAATTGAATCCATGCTTGGGACCAAGACTGTTCACCCACC--------AAAGTCTGATTCAAGA--CT--GA--CAGGCAT---CTCTGTAT--GTACAACCTACTTTACCTGTCTCTTCCAGTTCT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4105021 183 +   4267968 GTCTCATC-CTTTGGCTGTATGTAGTCTGGGAAGTGTCTGTGGGG------------------------------AGAAGCATGATGTTGATATATTCACAGTGGTGAATTGAATCCATGCTTGGGACCAAGACTGTTCACCCACC--------AAAGTCTGATTCAAGA--CT--GA--CAGGCAT---CTCTCTAT--GTACAACCTACTTTACCTGTCTCTTCCAGTTCT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2091543 183 -   2193130 GTCTCATC-CTTTGGCTGTATGTAGACTGGGAGGTGTCTGTGGGG------------------------------AGAAGCATGATGTTGATATATTCACAGTGGTGAATTGAATCCGTGCTTGGGACCAAGACTGTTCACCCACC--------AAAGTCTGATTCAAGA--CT--GA--CAGGCAT---CTCTCTAT--GTGCAACCTACTTTACCTGTCTCTTCCAGTTCT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2133456 182 +  10377808 GCCTCAT--GGTTGGCTGTATGTAGACTGGGAAATGTCTGTGGGC------------------------------AGTCGCGTGATGCTGATATATTCACAGTGATGCATTGAATCCATGCCCGGCCCCAAGCCTGTTCACCCACA--------AAAGTCTAATTCAAGA--GT--AA--CAAGCAT---CTTTCTTG--CTACAACCTACTCCCTCTGTGTCTTCCAGTTCT
i macNem1.NW_012014910v1    C 0 T 16748
s cerAty1.NW_012006043v1     1998038 166 -   8458610 GTCTCATC-CTTTGGCTCTATGTAGACTGGGAAGTGTCTGTGGGG------------------------------AGAAGCATGATGTTGATATATTCACAGTGGTGAATTGAATCCATGCTTGGGACCAAGACTGTTCACCCACC--------AAAGCTTGATTCAAGG--TT--AA--CAGGAAT---CTCTCTAT--GTACGACCTACTTCCC-----------------
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936629 183 +  75148670 GCCTCTTT-CTTTGGCTATACCTAGGTTGGTAAGTGTCTGTGGGG------------------------------AGAAGCATGATGTTGATATATTCACAGTGGTGAATTGAATCCATGCTTGGGACCAAGACTGTTCACCTACC--------GAAGTTTGATTCAAGG--TT--AA--CAGGCAT---CTCTCTAT--GTACGACCTACTTTACCTGTCTCTTCCAGTTCT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2182558 183 +   4244037 GTCTCATC-CTTTGGCTCTATGTAGACTGGGAAGTGTCTGTGGGG------------------------------AGAAGCATGATGTTGATATATTCACAGTGGTGAATTGAATCCATGCTTGGGACCAAGACTGTTCACCCACC--------AAAGCTTGATTCAAGG--TT--AA--CAGGAAT---CTCTCTAT--GTACGACCTACTTTACCTGTCTCTTCCAGTTCT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205591 182 +   4569836 GTCTCATC-CTTTGGCTGTATGTAGACTGGGAAGTGTCTGTGGG-------------------------------AGGAGCATGATGTTGATATATTCACAGTGGTGAATTGAATCCATGCTTGGGACCAAGACTGTTCACCCACC--------AAAGTTTGATTCAGGG--CT--AA--CAGGCAT---CTCTCTAT--GTGAGACCTACTTAACCTGTCTCTTCCAGTTCT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46155686 181 - 159171411 ACCTCCTT-CTTTGGCTGTATGTAGATTGGGAAGTGTCTGCGGGG------------------------------AAAAGTGTGACGCTCATATATTTATAGTGACCAAAGGAACCCATGTCTGTGCCCAAAACTGCTCAGTCACC--------AAAGTCTGATTCAAGA--CT--AA--CAGGTA-----TCTCTCT--GTAAAACACACACCACCTGTGTCTCTCAGTTCC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1875945 213 +   3513951 GCCTCATC-CTTTGGTTGTATGTAGACTGCAAAGCATCTGTGAGGAGATACTATTTCGTGAGGGATAATTTTCACAAAGCCATGATGCTGGTATATTCACAGTGATGAATTGAATCCATGCTTGGGACCAAGACTGTTTACCCACC--------AAAGTCTGATTCAATA--CT--AA--CAGGTAT---CTCTCTCT--GTACAGCTTACTTTACCTGTTTCTTCCAGTTCT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       11466 183 -   4077172 GCCTCATC-CTTTGGCTGTATGTAGACTGGAAAGCGTCTGTGAGG------------------------------AGAAGCATGATGCTGATATATTCACAGTAATGAATTGAATCCATGCTTGGGACCAAGACTGTTCACCCACC--------AAAGTCTGATTCGATA--CT--AA--CAGGCAT---CTCTCTCT--GTACAGCTTACTTTACCTGTCTCTTCCAGTTCT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        5208 183 -     94492 GCCTAATC-CTTTGGCAGTATGTGGACTGGACAGCGTCTGTGAGG------------------------------AGAAGCATGATGCTGATATATTCACAGTGATGAATTGAATCCATGCTTGGGACCAAGACTGTTCACCCACC--------AAAGTCTGATCTAATA--CT--AA--CAGGCAT---CTCTCTCT--GTACAGCTTACTTTACCTGTCTCTTCCAGTTGT
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22869255 183 +  28711273 GCCTGTTG-CTTGTGCTGTATGTAGATTGGGAGGGGTCTTTGGGG------------------------------AGAAGTGGGGTGCTGATATGTGCAGATTGTTGAATTGAATCCATGCTTTGGTCCAAGTTTGTTCACCTGCA--------AAAGCCAGAGCCAACA--CT--AA--CAGGCAT---CTCTTCCT--GTACAACCTACTGCAGGGGTGTTTCCCAGTTCT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22134414 147 - 122082543 --TTAATC-TTTTATCTGTACTTAGCTTATGAGGTATCTCTG---------------------------------A-----ATGATAATGCTACATTCACTGTGA-------------------AAACCAGGCTGGCTCTCTCTCCTTTTTCACAAATCCTTACTTCAGA--TT--AGCCCAGGGAT---CTGTTTAT-------------------CATCTCTTCCACCTAT
i mm10.chr11                C 0 I 4
s canFam3.chr9              21497845 190 +  61074082 GCCCAGTTAGTTTGGTTGCATGCAGACTGGGAA-TATCCCTGAGGTGAA--------------------------GGGAGCTTGATGGTGATATGTTCATAGTGATGAATTGCAACCATGCTGGAGCCCGAGTCTGTTTCCCCA-A--------AGTGCCTCATTCCAGACGCC--CG--CAGGCAT---CTGTCTCTTGGAGCACCCTACCTCGTTTGCATAGGGCAGTGCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            551601 187 -    852752 gccTCTGT-CTTTGGCTGTATTTAGATTGGCAAGTGCTTCTGGGG------------------------------TGT-GCATGATGCTGATATTTTCACAGTGAAAAATTGGATCCCTGCCTGGAACTAACTTTGTTCACCCACA--------GAAGCCTGATTCAAGG--CTGCAA--CAGGCATTTGTTTTCTCT--GTTGTAACAACTCCTCTGGCAAATCCCTATTTT
i dasNov3.JH570468          I 4141 C 0
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=482388.000000
s hg38.chr17_JH159148v1_alt    42288 58 +     88070 ATAAAAGCCTCTTGGGAAGAGGGTGTTCAGCACAATGTGTGCTATGTGGCAGAGCAGA
s panTro5.chr17             16353279 58 +  83181570 ATAAAAGCCTCTTGGGAAGAGGGTGTTCAGCACAATGTGTTCTATGTGGCAGAGCAGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16258027 58 +  83442489 ATAAAAGCCTCTTGGGAAGAGGGTGTTCAGCACAATGTGTTCTATGTGGCAGAGCAGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4105204 58 +   4267968 ATAAAAGCCTCTTGGGAAGAGGGTGTTCAGCACAATGTGTTCCATGTGGCAGAGCAGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2091726 57 -   2193130 ATAAAAGCCTCTTGGGAAGAGGGTGTTC-GAATAATGTGTTCCATGTGGCAGAGCAGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2116890 58 +  10377808 TTGAATGTCACTTGGGAAGAGGGTGTCTGGCAGAGTGTGTTCCATGTGGCAGAGCAGA
i macNem1.NW_012014910v1    T 16748 T 7525
s cerAty1.NW_012006043v1     1998204 55 -   8458610 ---AAAGCCACTTGGGAAGAGGGTGTTCGGCACAATGTATTCCATGTGGCAGAGCAGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936812 58 +  75148670 ACAAAAGCCACTTGGGAAGAGGGTGTTCGGCACAATGTGTTCCATGTGGCAGAGCAGA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2182741 58 +   4244037 ACAAAAGCCACTTGGGAAGAGGGTGTTCGGCACAATGTATTCCATGTGGCAGAGCAGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205773 57 +   4569836 ACAAAAGCCTCTT-GGAAGAGGATGTTTGGCACAATGTGTTCCACGTGGCAGAGCAGA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46155867 58 - 159171411 ATCAAAATCACCTGGGAAGAGGGTGTTTGGCACAGTGTGTTCTATGTGGCAGAGCAGA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1876158 57 +   3513951 AT-GAAGCCTCTTGGAAAGAGGGGGTTCAGCACAACGTGCTCTAGGAGGCAGTGTGGA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       11649 57 -   4077172 AG-GAAGCCTCTTGGAAAGAGGGGGTTCAGCACAATGTGCTCCAGGTGGCAGTGTGGA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        5391 57 -     94492 AT-GAagcctcttggaaagagggctttcagcacaatgtgctccAGGTGGCAGAGTGGA
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22869438 58 +  28711273 ATCCATGACACCTGGGAAGAGGATGTTTTTTACAATCTATTCCATGTGGTAAAGCAGA
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22134565 56 - 122082543 ACCAAAGTCACCTGGGAGGAAGATATCTGGCACCATATGCTCCATAT--CAGGGTAGA
i mm10.chr11                I 4 C 0
s canFam3.chr9              21498035 58 +  61074082 TTCAAAGAAACTTGGGTGGAGGACATCTGGCATCATGTCTTCCATATGTCAAGGCCGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            551788 58 -    852752 ATCAAAAATATTTGGGTAGATGTTGTTTAGCATAATCTCTTCCACATGGCTAATCAGA
i dasNov3.JH570468          C 0 C 0
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=114073.000000
s hg38.chr17_JH159148v1_alt    42346 18 +     88070 GCCAAAGCAAACACGTAG
s panTro5.chr17             16353337 18 +  83181570 GCCAAAGCAAACACGTAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16258085 18 +  83442489 GCCAAAGCAAACACGTAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4105262 18 +   4267968 GCCAAAGCAAACACATAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2091783 18 -   2193130 GCCAAAGCAAACAGGTAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1998259 18 -   8458610 GCCAAAGCAAACAGGTAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936870 18 +  75148670 GCCAAAGCAAACAGGTAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2182799 18 +   4244037 GCCAAAGCAAACAGGTAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205830 18 +   4569836 ACCAAAGCAAACAGGTAG
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46155925 18 - 159171411 ATTGAAGTAGTTGAGTAC
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1876215 18 +   3513951 ACCAAAGCAGACAGGTAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       11706 18 -   4077172 ACCAAAGCAGACAGGTAG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        5448 18 -     94492 ACCAAAGCAGACAGGTAG
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22869496 18 +  28711273 AAGAAAGCATATGGACAG
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22134621 18 - 122082543 CTTAGAGGAGTAATATGG
i mm10.chr11                C 0 I 12180
s canFam3.chr9              21498093 17 +  61074082 -ATCGAGCAGGTGGATAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            551846 18 -    852752 AGCAAAACAAGGAGACAG
i dasNov3.JH570468          C 0 C 0
e macNem1.NW_012014910v1     2116948 7525 +  10377808 T
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=1053988.000000
s hg38.chr17_JH159148v1_alt    42364 182 +     88070 AAAGAGGAGGGGTTCACTGGAATTCACAAAGCATCAAGCAATCTACGTG--CTGCggtgaccattcacc-----ctgatttgtctgggactgagg-ggcttaccagcatgagaatg---tgggactGGG--AATTACTGTGACATT---ACT----GCTTGAGGTCCAGGCAAAGCAATATGAGCT--GTGGCTCTAGCCCTAA
s panTro5.chr17             16353355 182 +  83181570 AAAGAGGAGGGGTTCACTGGAATTCACAAAGCATCAAGCAATCTACGTG--CTGCggtgaccattcatc-----ctgatttgtctgggactgagg-ggcttaccagcatgagaatg---tgggactGGG--AATTACTGTGACATT---ACT----GCTTTAGGTCCAGGCAAAGCAATATGAGCT--GTGGCTCTAGCCCTAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16258103 182 +  83442489 AAAGAGGAGGGGTTCACTGGAATTCACAAAGCATCAAGCAATCTATGTG--CTGCggtgaccattcatc-----ctgatttgtctgggactgagg-ggcttaccagcatgagaatg---tgggactGGG--AATTACTGTGACATT---ACT----GCTTTAGGTCCAGGCAAAGCAATATGAGCT--GTGGCTCTAGCCCTAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4105280 182 +   4267968 AAAGAGGAGGAGTTCACTGGAATTCACAAAGCATCAAGCAATCTACGTG--Ctggggtgaccgttcatc-----ctgatttgtctgggactgagg-ggcttatcagcatgagaatg---tgggactGGG--AATTACAGTGACATT---ACT----GCTTTAGGTCCAGGCAAAGCAATATGAGCT--GTGGCTCTAGCCCTAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2091801 182 -   2193130 AAAGAGGAGGAGTTCACTGGAATTCACAAAGCATCAAGCAATCTACGTG--Ctggggtgaccattcatc-----ctgatttgcctgggactgaag-agcttaccagcatgagagtg---tgggactggg--aattactgtgacata---act----gctttaggtccaggcaaagcagtatgagct--gTGGCTCTAGCCCTAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1998277 182 -   8458610 AAAGAGGAGGAGTTCACTGGAATTCTCAAAGCATCAAGCAATGTACCTG--CTgggtcgaccattcatc-----ctgatttgcctgggactgaga-ggcttactaacatgagaatg---tgtgactggg--aattactgtgacata---act----gctctaggtccaggcaaagcagtatgagct--gTGGCTCTAGCCCTAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64936888 182 +  75148670 AAAGAGGAGGAGTTCACTGGAATTCTCAAAGCATCAAGCAATCTACCTG--Ctggggcgaccattcatc-----ctgatttgcctgggactgagg-ggcttactaacatgagaatg---tgcgactggg--aattactgtgacata---act----gctctaggtccaggcaaagcagtatgagct--gTGGCTCTAGCCCTAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2182817 182 +   4244037 AAAGAGGAGGAGTTCACTGGAATTCTCAAAGCATCAAGCAATGTACCTG--CTGgggcgaccattcatc-----ctgatttgcctgggactgaga-ggcttactaacatgagaATG---TGTGACTGGG--AATTACTGTGACATA---ACT----GCTCTAGGTCCAGGCAAAGCAGTATGAGCT--GTGGCTCTAGCCCTAA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2205848 182 +   4569836 AAAGAGGAGGAGTTCACTGGAATTCATGAAGCATCAAGCAATCTACGTG--Ctggggtgaccattcatc-----ctgatttgcctgggactgagg-ggcttactaacatgagactg---tgggactggg--aattactgtgacata---act----gctgtaggtccaggcaaagcagtacgagct--gTGGCTGTAGCCCTAA
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46155943 173 - 159171411 AAA---GAGAAGTCCACTGGGATTTAGATAGCATCAAGCTATCTA-ATGCCCtggggtgaccattcatc-----ctgatttgtctgggagtgagg-ggcttaccaggaatagaatg---ta------gg--actttctgtgacata---act----gctttagattgaggccaaccagcatgagct--gT-GTCTCAGCTCTGA
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1876233 152 +   3513951 AAAGAGGAGGAGTTCACTGGAATTCACAAAGCCTCAAGCAATCTACATG--Ctggggtgagcattcatc-----ctgatttgcctgggtctgagg-ggcttaccagCAAGAAAATG---TAAGAGTGGG--AGTTACTGTGACATA---ACT------------TTG------------------------GCTCTAGCCCTAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       11724 182 -   4077172 AAAGAGGAGGAGGTCACTGGAATTCACAAAGACTCAAGCAATCTAAGTG--CTGgggtgagcattcatc-----ctgatttgcctgggactgagt-ggcttaccagcatgagaATG---TAAGAGCGGG--AATTACTGTGACATA---ACT----GCTCTAGGTCCAAGAAAAGCAGTCTGAGCT--TCGGCTCTAGCCCTAA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        5466 182 -     94492 AAAGAGGAGGAGTTCACTGGAATTCACAAAGTCTCAAGTAATCTACGTG--Ctggggtgagcattcatc-----ctgatttgcctgggactgagg-agcttaccagTATGAGAATG---TAAGAGTGGG--AATTACTGTGACATA---ACT----GCTCTAGGTCCAGGAAAAGCAGTCTGAGCT--GCGGCTCTAGCCCTAA
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22869514 155 +  28711273 AAGGATAAGTAGCATACTGGGAGTAACAAGGGTTCA----------GTG--TGagggtgaca--tcatc-----ttgattagcctg-----------gcttacaaagatgagaaag---tg------gg--agcttctgtgatatg---act----gccatagatccaggcaaaccaggatgagtt-ggtgacTTGTGTTCTAT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22146819 179 - 122082543 AATGAaaacaagcaaac--gaaggaacaaacaaacaaacaCCCAGCACT--TAGGAATAAGCAGACATC-----AGGGGATGTGTGGG--------------TGAGCATGAGTCTTGACTCTGACTGGGGCAGCTCCTGGGGTAGATGTACTTTTAGCTTTAGAGCCAGACAAACTGGAGTGGGCAAGATGACTCCAGTGC--A
i mm10.chr11                I 12180 C 0
s canFam3.chr9              21498110 151 +  61074082 AAACAGGACTAAACCA--------------GCATCCATGAACATACTTC--CTg-agtgaccagcagtcctgctctgatttacccagaaatgggt-gttttccc------aggccg---tg------gg--ccgttcagtggtata---agt----g----------gggcagtttgggatgagtc-ggtgactctCGTCCTAA
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            551864 161 -    852752 AAGAAGAAGAATCACCCTGGAATTCAGAAAGTTTCAATTAAT----ACC--CTGGG--GATCTACCATC-----CTTGTTTCACTAGGGCTGTGGTTTCCTCACGATATGGGGCTT---TG------GG--GATCA---------A---ACT----TGGTCTGGTTCAGGCAAACCAG-ATGAGAT--TCCAGtctagtcctga
i dasNov3.JH570468          C 0 I 61
e macNem1.NW_012014910v1     2116948 7525 +  10377808 T
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=130586.000000
s hg38.chr17_JH159148v1_alt    42546 27 +     88070 TCCAGGTTACTGGCA---------------------CAATCATTGCCA---------------
s panTro5.chr17             16353537 27 +  83181570 TCCAGGTTACTGGCA---------------------CAATCATTGCCA---------------
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16258285 27 +  83442489 TCCAGGTTACTGGCA---------------------CAATCATTGCCA---------------
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4105462 27 +   4267968 TCCAGGTTACTGGCA---------------------CAATCATTGCCA---------------
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2091983 27 -   2193130 TCCAGGTTGCTGGCA---------------------CAATCATTGCCA---------------
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1998459 27 -   8458610 TCCAGGTTACTGGCA---------------------CAATCATTGCCA---------------
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937070 27 +  75148670 TCCAGGTTACTGGCA---------------------CAATCACTGCCA---------------
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2182999 27 +   4244037 TCCAGGTTACTGGCA---------------------CAATCATTGCCA---------------
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2206030 27 +   4569836 TCCAGGTTACTGACA---------------------CAGTCATTGCCA---------------
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46156116 27 - 159171411 TCCTGGTTACCAGCA---------------------CAGTCCGTGCCA---------------
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1876385 27 +   3513951 CCCAGGCTACTGGGA---------------------CGGTCATTGGCA---------------
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       11906 27 -   4077172 CCCAGGCTACTGACA---------------------TGGTCATTGACA---------------
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        5648 27 -     94492 CCCAGGCTACTGGCA---------------------CGGTCATTGGCA---------------
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22869669 26 +  28711273 CCCCCGGTACCATCA---------------------GAATTAA-GTTA---------------
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22146998 48 - 122082543 CAGGGGCTGTCTGCAGCATCAAGGATCTTAGACTGGTGATCTTTCCCA---------------
i mm10.chr11                C 0 T 12303
s canFam3.chr9              21498261 50 +  61074082 CCTTGTTAACCAGCAGAGTGAGT-------------TATTTAATGACACTGACTCCACAGTTA
i canFam3.chr9              C 0 C 0
e dasNov3.JH570468            552025 61 -    852752 I
e macNem1.NW_012014910v1     2116948 7525 +  10377808 T
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=-109788.000000
s hg38.chr17_JH159148v1_alt    42573  53 +     88070 TT------------tctctgtctctgtctctg----------tctc------tgtctctgtctctgtctctctctctc--------------------------------------------tct
s panTro5.chr17             16353564  95 +  83181570 TTTCTTtgtctctgtctctgtctctgtctctg----------tctc------tgtctctgtctctgtctctctctctctctctgtctctgtctctgtctc--------------tctctctttct
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16258312 119 +  83442489 TTTCTTtgtctctgtctctgtctctgtctctgtctctctctctctc------tgtctctgtctctgtctctctctctctctctgtctctgtctctctctctgtctctgtctctgtctctctctct
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4105489  61 +   4267968 TTtctctgtctctgtctctgtctctgtctctg----------tctc------tgtctctgtctctgtctctctc------------------------------------------------tct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2092010  28 -   2193130 TT----------------------------------------tctc------tgtctctgtctctctctctctc---------------------------------------------------
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1998486  26 -   8458610 TT------------tctctgtctctgtctctc----------tctc------------------------tc-----------------------------------------------------
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937097  44 +  75148670 TT------------tctctgtctctgtctctg----------tctc------tgtctctgtctctgtctctc-----------------------------------------------------
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2183026  49 +   4244037 TT------------tctctgtctctgtctctg----------tctc------tgtctctgtctctgtctttctc------------------------------------------------tct
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2206057  28 +   4569836 TT------------tctctgtctctgtctctg----------tctc------tg----------------tc-----------------------------------------------------
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46156143   5 - 159171411 TT----------------------------------------TCT--------------------------------------------------------------------------------
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1876412   5 +   3513951 TC----------------------------------------TCT--------------------------------------------------------------------------------
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       11933   8 -   4077172 tc----------------------------------------tct--------------------------ctc---------------------------------------------------
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        5675  14 -     94492 tc----------------------------------------tctc--------------------tctcgctc---------------------------------------------------
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22869695  51 +  28711273 CT--TAGGTCACGGACGGAGCCTTTTTTTCCT----------TCTC------TGTCTTTCTTACTTTTT--------------------------------------------------------
i otoGar3.GL873537          C 0 T 8013
s mm10.chr11                22134743  42 - 122082543 ------------CTTCTGTATTACTATCTCAT----------TTTG------CTATCCTTTCTCTATTCT-------------------------------------------------------
i mm10.chr11                T 12303 C 0
s canFam3.chr9              21498311  53 +  61074082 --------CTGTTttctcttcctcccttcccc----------tccccccgtgcattcccttctcctcctct------------------------------------------------------
i canFam3.chr9              C 0 C 0
e dasNov3.JH570468            552025  61 -    852752 I
e macNem1.NW_012014910v1     2116948 7525 +  10377808 T
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=48885.000000
s hg38.chr17_JH159148v1_alt    42626 16 +     88070 ctctctctgtctctCT
s panTro5.chr17             16353659 16 +  83181570 ctctctctgtctctCT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16258431 16 +  83442489 ctctctCTGTCTCTCT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4105550 16 +   4267968 ctctctctgtctctct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2092038  1 -   2193130 ---------------t
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1998512 13 -   8458610 ---tctctctctctct
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937141 13 +  75148670 ---tctctctctctTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2183075 16 +   4244037 ctgtctctctctctCT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2206085 13 +   4569836 ---tctctctctCTCT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46156148  3 - 159171411 -------------TCT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1876417  6 +   3513951 ----------CTCTCT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       11941 13 -   4077172 ---tctctctctctct
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        5689 13 -     94492 ---tctctctctctTT
i aotNan1.NW_018505111v1    C 0 C 0
s mm10.chr11                22134785 16 - 122082543 CTTTCTCAGTTGCTTT
i mm10.chr11                C 0 C 0
s canFam3.chr9              21498364 16 +  61074082 tttcccttgtctttct
i canFam3.chr9              C 0 I 5841
e dasNov3.JH570468            552025 61 -    852752 I
e otoGar3.GL873537          22869746 8013 +  28711273 T
e macNem1.NW_012014910v1     2116948 7525 +  10377808 T
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=15498.000000
s hg38.chr17_JH159148v1_alt    42642 3 +     88070 GT-----T
s panTro5.chr17             16353675 3 +  83181570 GT-----T
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16258447 3 +  83442489 GT-----T
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4105566 3 +   4267968 GT-----T
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2092039 3 -   2193130 GT-----T
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1998525 3 -   8458610 GT-----T
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937154 3 +  75148670 GT-----T
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2183091 3 +   4244037 GT-----T
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2206098 3 +   4569836 GT-----T
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46156151 8 - 159171411 GTATTTCT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1876423 3 +   3513951 GT-----T
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       11954 3 -   4077172 GT-----T
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        5702 3 -     94492 GT-----T
i aotNan1.NW_018505111v1    C 0 C 0
s mm10.chr11                22134801 3 - 122082543 TC-----T
i mm10.chr11                C 0 C 0
s canFam3.chr9              21504221 3 +  61074082 gt-----c
i canFam3.chr9              I 5841 C 0
e dasNov3.JH570468            552025 61 -    852752 I
e otoGar3.GL873537          22869746 8013 +  28711273 T
e macNem1.NW_012014910v1     2116948 7525 +  10377808 T
e macFas5.chr16             28052907 0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=31875.000000
s hg38.chr17_JH159148v1_alt    42645 3 +     88070 TTC
s panTro5.chr17             16353678 3 +  83181570 TTC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16258450 3 +  83442489 TTC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4105569 3 +   4267968 TTC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2092042 3 -   2193130 TTC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1998528 3 -   8458610 TTC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937157 3 +  75148670 TTC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2183094 3 +   4244037 TTC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2206101 3 +   4569836 TTC
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46156159 3 - 159171411 TTT
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1876426 3 +   3513951 TTC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       11957 3 -   4077172 TTC
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        5705 3 -     94492 TTC
i aotNan1.NW_018505111v1    C 0 C 0
s mm10.chr11                22134804 3 - 122082543 TTC
i mm10.chr11                C 0 C 0
s canFam3.chr9              21504224 3 +  61074082 ttc
i canFam3.chr9              C 0 T 23154
s dasNov3.JH570468            552086 3 -    852752 ttc
i dasNov3.JH570468          I 61 C 0
e otoGar3.GL873537          22869746 8013 +  28711273 T
e macNem1.NW_012014910v1     2116948 7525 +  10377808 T
e macFas5.chr16             28052907 0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=7710.000000
s hg38.chr17_JH159148v1_alt    42648 1 +     88070 A
s panTro5.chr17             16353681 1 +  83181570 A
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16258453 1 +  83442489 A
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4105572 1 +   4267968 A
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2092045 1 -   2193130 A
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1998531 1 -   8458610 A
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937160 1 +  75148670 A
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2183097 1 +   4244037 A
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2206104 1 +   4569836 A
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46156162 1 - 159171411 A
i calJac3.chr5              C 0 C 0
s saiBol1.JH378271           1876429 1 +   3513951 A
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       11960 1 -   4077172 A
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        5708 1 -     94492 A
i aotNan1.NW_018505111v1    C 0 C 0
s mm10.chr11                22134807 1 - 122082543 T
i mm10.chr11                C 0 I 8
s canFam3.chr9              21481073 1 +  61074082 A
i canFam3.chr9              T 23154 C 0
s dasNov3.JH570468            552089 1 -    852752 a
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22869746 8013 +  28711273 T
e macNem1.NW_012014910v1     2116948 7525 +  10377808 T
e macFas5.chr16             28052907 0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=452088.000000
s hg38.chr17_JH159148v1_alt    42649 74 +     88070 GTGAGGGAATTAGGTGAGTTGAGATGATATCTGATTCCTCTTTGAGGTTTACCAttgtttaaa-actttttaaat
s panTro5.chr17             16353682 74 +  83181570 ATGAGGGAATTAGGTGAGTTGAGATGATATCTGATTCCTCTTTGAGGTCTACCGTTGTTTAAA-ACTTTTTAAAT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16258454 74 +  83442489 ATGAGGGAATTAGGTGAGTTGAGATGATATCTGATTCCTCTTTGAGGTCTACCGTTGTTTAAA-ACTTTTTAAAT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4105573 74 +   4267968 ATGAGGGAATTAGATGAGTTGAGATGATATCTGATTCCTCTTTGAGGTCTACCATTGTTTAAA-ACTTTTTAAAT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2092046 73 -   2193130 GTGAGGGAATTAGATGAGTTGAGATGATATCTGATTCCTCTTTGAGGTCTACCA-TGtttaaa-actttttaaat
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1998532 73 -   8458610 ATGAGGGAATTAGATGAGTTGAGATGATATCTGATTTCTCTTTGAGGTCTACTA-TGTTTAAA-ACTTTTTAAAT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937161 73 +  75148670 ATGAGGGAATTAGATGCGTTGAGATGATATCTGATTCCTCTTTGAGGTCTACCG-TGTTTAAA-ACTTTTTAAAT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2183098 73 +   4244037 ATGAGGGAATTAGATGAGTTGAGATGATATCTGATTTCTCTTTGAGGTCTACTA-TGTTTAAA-ACTTTTTAAAT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2206105 73 +   4569836 ATGAGGGAATTAGATGAGTTGAGATGATATCTGATTCCTCTTTGAGGTCTACCA-TGTTTAAA-ACTTTTAAAAT
i colAng1.NW_012122154v1    C 0 C 0
s calJac3.chr5              46156163 74 - 159171411 ATGAAGGAATTAGTTGAGTTGAGATGACACCTGATTCATCTTGGAGTTGTAACA-TAGTTAAACATTATTTAGGT
i calJac3.chr5              C 0 N 0
s saiBol1.JH378271           1876430 73 +   3513951 ATGAGGAGATTAGATGAGTTCAGATGATACCTGATTTCTCTTTGAGGTCTTCCA-TGTTTAAA-ACTTTTTAAGT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       11961 72 -   4077172 ATGAGGAAATTAGATGAGTTCAGATGATACCTGATTTCTCTTTGATTTTTTCCA-TGTTTAAA-ACTTTTTAGT-
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        5709 72 -     94492 GTGAGGAAATTAGATG-GTTCAGATGATACCTGATTTCTCTTTGAGGTCTTCCA-TGTTTAAA-ACTTTTTAAGT
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22861733 72 +  28711273 ATGAGGGAATTAGATTAGTTGCAGTGATACCTGATTTGCCTTTGTGATCTAACA-TA-TTAAC-ATTTTGGGGGT
i otoGar3.GL873537          T 8013 I 2
s mm10.chr11                22134816 71 - 122082543 ATGGGTTAA--AAATAAGTTGAAATGGTTCCTAATTTGTTTGTGGCGGCAAATG-TATTTAAA-ACATTTGGAAG
i mm10.chr11                I 8 I 1
s canFam3.chr9              21481074 41 +  61074082 TTGAAGGGGT------AGTCTTGGTGATAG-TGCTCCTTTTTATAAAT---------------------------
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            552090 66 -    852752 -tgagggagttagattagatcac---atacttgacgtttctttgaattctaaca-tATTTTAA-ACTAATAT---
i dasNov3.JH570468          C 0 C 0
e macNem1.NW_012014910v1     2116948 7525 +  10377808 T
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=951770.000000
s hg38.chr17_JH159148v1_alt    42723 165 +     88070 tataccattcatttcagaagag-tgcaaatt-atgaa-ttccaacttgatataatattacattataaatacatctaagtccccattaccagtt---tacaaaatagaaattaattccattccctccaaattatatctttttacttatctccaaaggtagctagtcactc--ta
s panTro5.chr17             16353756 165 +  83181570 TATACCATTCATTTCAGAAGAG-TGCAAATT-ATGAA-TTCCAACTTGATATAATATTACATTATAAATACATCTAAGTCCCCATTACCAGTT---TACAAAATAGAAATTAACTCCATTCCCTCCAAATTATATCTTTTTACTTATCTCCAAAGGTAGCTAGTCACTC--TA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16258528 165 +  83442489 TATACCATTCATTTCAGAAGAG-TGCAAATT-ATGAA-TTCCAACTTGATATAATATTACATTATAAATACATCTAAGTCCCCATTACCAGTT---TACAAAATAGAAATTAATTCCATTCCCTCCAAATTATATCTTTTTACTTATCTCCAAAGGTAGCTAGTCACTC--TA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4105647 166 +   4267968 TATACCATTCATTTCAGAAGAG-TGCAAATT-ATAAATTTCCAACTTGATATAATATTACATTATAAATACATCTAAGTCCCCATTACCAGTT---TACAAAATAGAAATTAATTCCATTCCCTCCAAATTATATCTTTTAACTTATCTCCAAAGGTAGCTAGTCACTC--TA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2092119 166 -   2193130 tatacagttcatttcagaagag-tgcaaatt-atgaatttccaacttgatataatattactttgtaaatacatctaagtccccattaccagtt---tacaaaatagaaattaattccattccctccaaattatatctttttacttatctccaaaggtagctagtcactc--ta
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1998605 166 -   8458610 TATACCATTCATTTCAGAAGAA-TGCAAATT-ATTAATTTCCAGCTTGATACAATATTACATTGTAAATACATCTAAGTCCCCATGACCAGTT---TACAAAACAGAAATTAATTCCATTCCATCCAAATTATATCTTTTTACTCATCTCCAAAGGTAGCTAGTCACTC--TA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937234 166 +  75148670 TATACCATTCATTTCAGAAGAA-TGCAAATT-ATTAATTTCCAGCTTGATACAATATTACATTGTAAATACATCTAAGTCCCCATGACCAGTT---TACAAAACAGAAATTAATTCCATTCCATCCAAATTATATCTTTTTACTCATCTCCAAAGGTAGCTAGTCATTC--TA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2183171 166 +   4244037 TATACCATTCATTTCAGAAGAA-TGCAAATT-ATTAATTTCCAGCTTGATACAATATTACATTGTAAATACATCTAAGTCCCCATGACCAGTT---TACAAAACAGAAATTAATTCCATTCCATCCAAATTATATCTTTTTACTCATCTCCAAAGGTAGCTAGTCACTC--TA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2206178 166 +   4569836 TATACCATTCATTTCAGAAGAA-TGCAAATT-ATTAATTTCCAACTTGATACAATATTACATTGTAAATACATCTAAGTCCCCATGACCAGTT---TATGAAATAGAAATTAATTCCATTCCATCCAAATTATATCTTTTTACTCATCTCCAAAGGTAGTCCGTCACTC--TA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1876503 161 +   3513951 TATACCATTTGTTTCAGAAGAA-TGCAAATT-ATTAATTCATATCTTCAT---ATATTATATTGTAAATACATCTAGGTCTCCATTACCAGTT---TACAAAATAGAAATTAATTCAATTCCCTCCAA--TATATTTTCTCATTTGTCTTCAAAGGTAGCTAGTCACTC--TA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       12033 164 -   4077172 TATACCATTTGTTTCAGAAGAA-TGCAAATT-ATTAATTCGTATCTTCATATAATATTATATTGTAAATACATCTAGGTCTCCATTACCAGTT---TACAAAATAGAAATTAATTCAATTCCCTCCAA--TATATCTTTTTATTTGTCTTCCAAGGTAGCTAGTCACTC--TA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        5781 163 -     94492 TATACCATTTGTCTCAGAAGAA-TGCAAAGT-ATTAATTC-TACCTTCAAATAATATTATATTGTAAATACATCTAGGTCTCCATTACCAGTT---TACAAAATAGAAATTAATTCAATTCCCTCCAA--TATATCTTCTTATTTGTCTTCAAAGGTAGCTAGTCACTC--TA
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22861807 166 +  28711273 TATACCACTTTTTAAAAAAGAAGCGCAAATTAACTAATTTCCAGCTATAGAGAATATCACAAAGTGAATACATCCCTGTCACTATAACCAAGT---TA--GGATGTAAATTAATTCCCCTCCTTCCAAATTACATCCTCTTACTCATCCCAATAGGTCCCTAATCTCTC--TA
i otoGar3.GL873537          I 2 C 0
s mm10.chr11                22134888 162 - 122082543 TCTACTGTACATATTGAAAGAG--ACAAGCT-ATG---TTATGG-TGGAAAGGATATGACAAAATAAACATGCC--AGTCTC-ATTACTAATCAGGTAAGAAGTACAAATTTATCTAATTTT-TACAAACAATACCCTCTCACTATTTCTCAAGGAGAGATGATCACTTTGTA
i mm10.chr11                I 1 C 0
s canFam3.chr9              21481115 149 +  61074082 TATAATAC-------------A-TTAAAATC-GATAATTTCAAATCTGATAGAATATCACCGAGTGAACCC--CCATGTCGCTATTACCAGGT---TAACAAAAAGAACTTAATTTAATCCCCTTCAAATTATAATCCTTA--TTATTCCCAAAGGTATGTATGTATTC--TA
i canFam3.chr9              C 0 I 38610
s dasNov3.JH570468            552156 107 -    852752 ------------------------------------------------------TCTCCCAAAGATAACACATCCATGTCACTATTATGAGGT---TTTTAAACAGAACTTAAGCCCACGGTCTCAAA---TTATGCTaccactcacctcccaaga----ttattactg--ta
i dasNov3.JH570468          C 0 C 0
e macNem1.NW_012014910v1     2116948 7525 +  10377808 T
e macFas5.chr16             28052907   0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=432624.000000
s hg38.chr17_JH159148v1_alt    42888 76 +     88070 tcaagttttaatcctgtaggtcagttttgtttttttctttgacttttatgtaaataaaa-attatagaatttgctt---c
s panTro5.chr17             16353921 76 +  83181570 TCAAGTTTTAATCCTGTAGGTCAGTTTTGGTTTTTTCTTTGACTTTTATGTAAATAAAA-ATTATAGAATTTGCTT---C
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16258693 75 +  83442489 TCAAGTTTTAATCCTGTAGGTCAGTTTTGG-TTTTTCTTTGACTTTTATGTAAATAAAA-ATTATAGAATTTGCTT---C
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4105813 76 +   4267968 TCAAGTTTTAATCCTGTAGGTCAGTTTTGGTTTTTTCTTTGACTTTTATGTAAATAAAA-ATTATAGAATTTGCTT---C
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2092285 76 -   2193130 tcaagttttaatcctgtaggtcagttttggctttttctttgacttttatgtaaataaaa-attacagaatttgctt---c
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1998771 76 -   8458610 TCAAGTTATAATCCTGTAGGTCAGTTTTGGATCTTTCTTTGACTTTTATGTAAATAAAA-ATTATAGAATGTGCTT---C
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937400 75 +  75148670 TCAAATTATAATCCTGTAGGTCAGTTTTGGATCTTTCTTTGAC-TTTATGTAAATAAAA-ATTATAGAATGTGCTT---C
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2183337 76 +   4244037 TCAAGTTATAATCCTGTAGGTCAGTTTTGGATCTTTCTTTGACTTTTATGTAAATAAAA-ATTATAGAATGTGCTT---C
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2206344 76 +   4569836 TCAAGTTGTAATCCTGTAGGTCAGTTTTGGATCTTTCTTTGACTTTTGTGTAAATAAAA-ATTATAGAATGTACTT---C
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1876664 70 +   3513951 TCAAGTTATAATCCTGAAGGTCAGTTTTGGCTTTTTCTTTGACTTGTATGT------AA-ATTATAGAATTTGCTT---C
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       12197 76 -   4077172 TCAAGTTATAATCCTGAAGGTCAGTTTTGGCTTTTTCTTTGACTTGTATGTAAATACAA-ATTATAGAATTTGCTT---C
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        5944 76 -     94492 TCAAGTTATAATCCTGAAGGTCAGTTTTGGCTTTTTCTTTGACTTGTATGTAAATAAAA-ATTATAGAATTTGCTT---C
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22861973 74 +  28711273 TTGATTTGTAACACTGTAGATACATTTTGAGGTGTT-TTTGACATTTACGTAAAAGAAA-A----AAAATTCAACTGGCC
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22135050 67 - 122082543 TCAAGTT----TACTTATGGCCAG---TGAAGCCAACTTTGGCGTCTTTGCAAATAAAA-GTTAT--AATTGATTT---C
i mm10.chr11                C 0 C 0
s dasNov3.JH570468            552263 74 -    852752 ctaacttgcaa-attgcatgaaagttatgactgtttc--tgacattgttttaagtgaaatactatagaattgactt---c
i dasNov3.JH570468          C 0 I 6077
e canFam3.chr9              21481264 38610 +  61074082 I
e macNem1.NW_012014910v1     2116948 7525 +  10377808 T
e macFas5.chr16             28052907  0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=28217.000000
s hg38.chr17_JH159148v1_alt    42964 5 +     88070 actgt
s panTro5.chr17             16353997 5 +  83181570 ACTGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16258768 5 +  83442489 ACTGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4105889 5 +   4267968 ACTGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2092361 5 -   2193130 actgt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1998847 5 -   8458610 AATGT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937475 5 +  75148670 AATGT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2183413 5 +   4244037 AATGT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2206420 5 +   4569836 ACTGT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1876734 5 +   3513951 ATTGT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       12273 5 -   4077172 ATTGT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        6020 5 -     94492 ATTGT
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22862047 5 +  28711273 ACTGT
i otoGar3.GL873537          C 0 C 0
s mm10.chr11                22135117 5 - 122082543 TCTAT
i mm10.chr11                C 0 N 0
e canFam3.chr9              21481264 38610 +  61074082 I
e dasNov3.JH570468            552337 6077 -    852752 I
e macNem1.NW_012014910v1     2116948 7525 +  10377808 T
e macFas5.chr16             28052907 0 -  80997621 C
e rheMac8.chr16             30139106 31425 -  77216781 I

a score=20256.000000
s hg38.chr17_JH159148v1_alt    42969 4 +    88070 gttt
s panTro5.chr17             16354002 4 + 83181570 GATT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16258773 4 + 83442489 GATT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4105894 4 +  4267968 GTTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2092366 4 -  2193130 attt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1998852 4 -  8458610 GTTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937480 4 + 75148670 GTTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2183418 4 +  4244037 GTTT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2206425 4 +  4569836 GTTT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1876739 4 +  3513951 GTTT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       12278 4 -  4077172 GTTT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        6025 4 -    94492 GTTT
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22862052 4 + 28711273 CTTT
i otoGar3.GL873537          C 0 I 5332
e canFam3.chr9              21481264 38610 + 61074082 I
e dasNov3.JH570468            552337 6077 -   852752 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907 0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=119834.000000
s hg38.chr17_JH159148v1_alt    42973 20 +    88070 TTGGCATAATCAAAAGCAGC
s panTro5.chr17             16354006 20 + 83181570 TTGGCATAATCAAAAGCAGC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16258777 20 + 83442489 TTGGCATAATCAAAAGCAGC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4105898 20 +  4267968 TTGGCATAATCAAAAGCAGC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2092370 20 -  2193130 TTGGCATAATCAAAAGCAGC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1998856 20 -  8458610 TTGGCATAATCAAAAGCAGC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937484 20 + 75148670 TTGGCATAACCAAAAGCAGC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2183422 20 +  4244037 TTGGCATATTCAAAAGCAGC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2206429 20 +  4569836 TTGGCATAATCAAAAGCAGC
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1876743 20 +  3513951 TTGGCGTAATCAAaagcagc
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       12282 20 -  4077172 TTGGCATAATCAAAAGCAGC
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        6029 20 -    94492 TTGGCATAATCAAAAGCAGC
i aotNan1.NW_018505111v1    C 0 C 0
e canFam3.chr9              21481264 38610 + 61074082 I
e dasNov3.JH570468            552337 6077 -   852752 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907  0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=811449.000000
s hg38.chr17_JH159148v1_alt    42993 139 +    88070 AATTATAACCTGGTCATTTCATTTTGGATCCTTCATGTTAGCAGACCAGCAGGTAGATAAAGGAGTTAATATTCCATGAGGGATAATTTTCGTGAAGCCATAGAGCGTAGGGAG-AATATATCTGAAACTCAAGAAATTT
s panTro5.chr17             16354026 139 + 83181570 AATTATAACCTGGTCATTTCATTTTGGATCCTTCATGTTAGCAGACCAGCAGGTAGATAAAGGAGTTAATATTCCATGAGGGATAATTTTTGTGAAGCCATAGAGCATAGGGAG-AATATATCTGAAACTCAAGAGATTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16258797 139 + 83442489 AATTATAACCTGGTCATTTCATTTTGGATCCTTCATGTTAGCAGACCAGCAGGTAGATAAAGGAGTTAATATTCCATGAGGGATAATTTTCGTGAAGCCATAGAGCGTAGGGAG-AATATATCTGAAACTCAAGAGATTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4105918 139 +  4267968 AATTATAACCTGGTCATTTCATTTTGGATCCTTCATGTTAGCAGACCAGCAGGTAGATAAAGGAGTTAATATTCCATGAGGGATAATTTTCATGAAGCCATAGAGCATAGGGAG-AATATATCTGAAACTCAAGAGATTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2092390 139 -  2193130 AATTATAACACGGTCACTTCATTTTGGATCCTTCATGTTAGCAGACCAGCAGGTATATAAAGGAGTTAATATTTCATGATGGATAATTTTCATGAAGCCATAGAGTGTAGGGAG-AATATATCTGAAACTCAAGAGATTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1998876 139 -  8458610 AATTATAACCTGGTCATTTCATTTTGGATCCTTCATGTTAGCAGACCAGCAGGTAGATAAAGGAGTTGCTATTTCATGAGGGATAATTTTCATGAAGCCATAGAGTATAGGGAG-AATATATCTGAAACTCAAGAGATTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937504 139 + 75148670 AATTATAACCTGGTCATTTCATTTTGGATCCTTCATGTTAGCAGACCAGCAGGTAGATAAAGGAGTTGCTATTTCATGAGGGATAATTTTCATGAAGCCATAGAGTATAGGGAG-AATATATCTGAAACTCAAGAGATTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2183442 139 +  4244037 AATTATAACCTGGTCATTTCATTTTGGATCCTTCATGTTAGCAGACCAGCAGGTAGATAAAGGAGTTGCTATTTCATGAGGGATAATTTTCATGAAGCCATAGAGTATAGGGAG-AATATATCTGAAACTCAAGAGATTT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2206449 139 +  4569836 AATTATAACCTGGTCATTTCATTTTGGATCCTTCATGTTAGCAGACCAGCAGGTACATAAAGGAGTTACTATTTCATGAGGGATAATTTTCATGAAGCCATAGAGTATAGGGAG-AATATATCTGAAACTCAAGAGATTT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1876763 133 +  3513951 aattataacctggtca------tttggacccttcatgtcagaacagcagcagatagataaaggagttactatTTCATGAGGGATAATTTTCACAAAGCCATATAGTgtagggag-aatgtatctggaactcaagagattt
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       12302 133 -  4077172 AATTATAACCTGGTCA------TTTGGACCCTTCATGTCAGCACAGCAGCAGATAGATAAAGGAGTTACTATTTCATGAGGGATAATTTTCACAAAGCCATGTAGTgtagggag-aatgtatctggaactcaagagattt
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        6049 133 -    94492 AATTATAACCTGGTCA------TTTGGAACCTTCATGTCAGCATGGCAGCAGATAGATAAAGAAGTTACCATTTCATGAGGGATAATTTTCACAAAGCCATATAGTgtagggag-aatgtatctggaactcaagagattt
i aotNan1.NW_018505111v1    C 0 C 0
s canFam3.chr9              39587347 135 - 61074082 AACTGTCACCTAGTCA-----TTTTGTACTCCTCATGTTAGTAGACGAGCATGTAGAGAAAAGGGTCACTGTTCGGTGATGGATAATTATCATAAAAAGGTAGACTGCAGAGAGAAAGGTATCTGGAACTCAGGAGATTT
i canFam3.chr9              T 1647 I 2025
e dasNov3.JH570468            552337 6077 -   852752 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907   0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=2078499.000000
s hg38.chr17_JH159148v1_alt    43132 400 +    88070 ACTATATATATTAAAGCATTACActgccattaaaaactatggcaaatcaagtggctgaagtttattttctcacagttctgaaggctaaaataaaggtgttggcaatgttgttttcatctgagggctgtgagggaaatatctgtttcaggtctctctccttgacctgtagatgtctatcttctccatgtgtctcttacatcatcttccctctatatgcatcctgtttgaatttcccctgtttatacagacaccagtcacattgaatcagaagcacaatttattccaatatgaccttatcttaccatcttgca-tttaagtgaccctatttGAATATGAGTTCTTGGGGACACAATTCGACCCATAACCTTGGAATATCTCGTAGTGTATCCATGCCCATTGA
s panTro5.chr17             16354165 399 + 83181570 ACTATATATATTAAAGTATTACActgccattaaaaactgtggcaaatcaagtggctgaagtttattttctcacagttctgaaggctaaaataaaggtgttggcaatggtgttttcatctgagggctgtgagggaaatatctgtttcaggtctctc-ccttgacctgtagatgtctatcttctccatgtgtctcttacgtcatcttccctctatatgcatcctgtttgaatttcccctttttatacagacatcagtcacattgaatcagaagcacaatttattccaatatgaccttatcttaccatattgca-tttaaatgaccctatttGAATATGAGTTCTTGGGGACACAATTCGACCCATAACCTTGGAATATCTAGTAGTGTATCCATGCCCATTGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16258936 398 + 83442489 ACTATATATATTAAAGTATTACActgccattaaaaac--tggcaaatcaagtggctgaagtttattttctcacagttccgaaggctaaaataaaggtgttggcaatggtgttttcatctgagggctgtgagggaaatatctgtttcaggtctctctccttgacctgtagatgtctatcttctccatgtgtctcttacgtcatcttccctctatatgcatcctgtttgaatttcccctttttatacagacatcagtcacattgaatcagaagcacaatttattccaatatgaccttatcttaccatattgca-tttaaatgaccctatttGAATATGAGTTCTTGGGGACACAATTCTACCCATAACCTTGGAATATCTCGTAGTGTATCCATGCCCATTGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4106057 400 +  4267968 ACTATATATATTAAAGTATTACActgccattaaaaactatggcaaatcaagtggctgaagtttattttctcacagttctgaaggctaaaataaaggtgttggcaatgttgttttcatctgagggctgtgagggaaatatctgttccaggtctctctccttgacctgtagatgtctatcttctccatgtgtctcttaagtcatcttccctctatatgcatcctgtttgaatttcccctttttatacagacatcagtcacattgaatcagaagcacaatttattccaatatgaccttatcttaccatattgca-tttaaatgaccctatttGAATATGAGTTCTTGGGGACACAATTCGACCCATAACCTTGGAATATCTCGTAGTGTATCCGTGTCCATTGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2092529 400 -  2193130 ACTATATATATTAAAGTATTACActgccattaaaaactatggcaaatcaagtggctgaaatttattttcttacagttctgaaggctaaaataaaggtgtttgcaatgttgttttcatctgagggctgtgagggaagtatctgttccaggtctgtctccttgacctgtggatgtctatcttctccatgtgtctcttacatcatcttccctctatatgcatcctgtttgaatttcccctttttatacagacatcagtcatattgaatcagaagcacaatttattccaatatgatcttatcttaccatattgca-tttaaatgaccctatttGAATATGAGTTCTTGGGGACACAATTCGACCCATAACCTTGGAATATCTCGTAGTGTATCCATGCCCAGTGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1999015 401 -  8458610 ACTATAtgtatttaagtattatactgccattaaaaactatggcaaatcaagtggctgaaatttattttctcacagttctgaaggctaaaatgaaggtgttggcaatgttgttttcatctgagggctgtgagggaagtatctgttccagatctctctccttgacctgtagatgtctatcttctccatgtgtgtcttacatcatcttccctctacatgcgtccgatctcaatttcccctttttatgcaggcatcagtcgtattgagtcagaggcacaatttattccaatatgaccttatattaccatattgcattttaaatgatcctatttgaatatgaattattgaggacacaattcaacccataacCTCAGAATATCTCAGAGTGTATCCATGCCCAGTGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64937643 401 + 75148670 ACTATATGTATTTAAGTATTATActgccattaaaaactatggcaaatcaagtggctgaaatttattttctcacagttctgaaggctaaaatgaaggtgttggcaatgttgttttcatctgagggctgtgagggaagtatctgttccaggtctctctccttgacctgtagatgtctatcttctccatgtgtgtcttacatcatcttccctctatatgcgtctggtctcaatttcccctttttatacagacatcagtcgtattgagtcagaggcacaatttattccaatatgaccttatgttaccatattgcattttaaatgaccctatttGAATATGAGTTATTGAGGACACAATTCAACCCATAACCTCGGAATATCTCAGAGTGTATCCATGCCCAGTGA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2183581 401 +  4244037 ACTATATGTATTTAAGTATTATActgccattaaaaactatggcaaatcaagtggctgaaatttattttctcacagttctgaaggctaaaatgaaggtgttggcaatgttgttttcatctgagggctgtgagggaagtatctgttccagatctctctccttgacctgtagatgtctatcttctccatgtgtgtcttacatcatcttccctctacatgcgtccgatctcaatttcccctttttatgcaggcatcagtcgtattgagtcagaggcacaatttattccaatatgaccttatattaccatattgcattttaaatgatcctatttGAATATGAATTATTGAGGACACAATTCAACCCATAACCTCAGAATATCTCAGAGTGTATCCATGCCCAGTGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2206588 401 +  4569836 ACTGTAtgtatttaagtattatactgccattaaaaactatggcaaatcaagtggctgaaatttattttctcacagttctgaaggctaaaatgaaggtgatggcaatgttgttttcatctgagggctgtgagggaagtatctgttccaggtctctctctttgacctgtagatgtctatcttctccatgtgtctcttacatcatcttccctctatatgcgtcctgtctcaatttcccctttttatacagacatcagtcggattgaatcagaggcacaatttattccaatatgaccttatgttatcatattgcattttaaatgaccctatttGAATATGAGTTCTTGAGGACACAATTCAACCCATAACCTCGGAATATCTCAGAGTGTATCCACGCCCATTga
i colAng1.NW_012122154v1    C 0 I 10
s saiBol1.JH378271           1876896 395 +  3513951 actggatatattaatttattacactgccatgaaaaactatga-----caagtggcttaaatttacgttctcacagttctgaaggctaaaattaaggtgttggcaatgctgttttcctctgagggctgtgagggaagtgcctgttccaggttgctctccttgacctgtggatatctatcttctccatatgtctcttacatcatcttccctctctatgcatcctgttttaattctcccttttcatacagacatcagtcatattgaatcagaggcacaatttatcccaatatcacctcatcttaacatattgca-tttaaatgaccctatttgaatataaattcttggggacacaattcaacccataacccgggagtatcttatagtgaatccatacacagtga
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       12435 385 -  4077172 actggatatattaatttattatactgccatgaaaaactatga-----caagtggcttaaatttatgttctcacagttccgaaggctaaaattaaggtgttgggaatgctgttttcctctgagggctgtgagggaattgcctgttccaggtcgttctccttgacctgtggatatctatcttctctatgtgtctcttacatcatcttccctctctatgcatcctgttttaattcccccttttcatacagacatcagtcttattgaatcagaggca----------caatatcacctcatcttaacatattgca-tttaaatgaccctatttgaatataaattcttggggacacaattcaacccataaccctggagtatcttatagtgtatccatgcacagtga
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        6182 395 -    94492 actggatatattaatttattacactgccattaaaaactatga-----caagtggcttaaatttatgttctcacagttctgaaggctaaaattaaggtgttggcaatgctgttttcctctgagggctgtgagggaagtgcctgttccaggtcgctctccttgacctgtggatatctatctcctccatgtgtctcttacatcatcttccctctctatgtgtcctgttttaattccctcttttcatacagacatcagtcatagtgaatcagaggcacaatttattccaatatcacctcatcttaatatattgca-tttaaatgacactatttgagtataaattcttggggacacaattcaacccataaccctggagtatcttatagtgtatccatgcacagtga
i aotNan1.NW_018505111v1    C 0 C 0
e canFam3.chr9              39587482 2025 - 61074082 I
e dasNov3.JH570468            552337 6077 -   852752 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907   0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=212210.000000
s hg38.chr17_JH159148v1_alt    43532 51 +    88070 TAAACACAAATGAGTAACAAAAGCAACCACAGTTGGACAATGGTGTAGTAA
s panTro5.chr17             16354564 51 + 83181570 TAAACATAAATGAGTAACAAAAGCAACCACAGTTGGACAATGGTATAGTAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16259334 51 + 83442489 TAAACATAAATGAGTAACAAAAGCAACCACAGTTGGACAATGGTATAGTAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4106457 51 +  4267968 TAAACACAAATGAGTAACAAAAGCAACCACAGTTGGACAGTGGTATAGTAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2092929 50 -  2193130 TAAACACAAATGAGTAACAAAAGC-ACCACAGTTGGACGATGGTATAGTAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1999416 51 -  8458610 TAAACACAAATGAGTAACAAAAGCAACCACAGTTGGACAATGGTATAGTAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64938044 51 + 75148670 TAAACACAAATGAGTAACAAAAGCAACCACGGTTGGACAATGGTATAGTAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2183982 51 +  4244037 TAAACACAAATGAGTAACAAAAGCAACCACAGTTGGACAATGGTATAGTAA
i manLeu1.NW_012106252v1    C 0 M 505
s saiBol1.JH378271           1877291 47 +  3513951 tacacacaaatgagtaacagaagcaaccacagctggacaatggttta----
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       12820 47 -  4077172 cacacactaatgagtaacaaaagcaatcacagttgggcaatggtata----
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        6577 47 -    94492 tgcacacaaatgagtaacaaaagcaaccacagttggacaatggtata----
i aotNan1.NW_018505111v1    C 0 C 0
e canFam3.chr9              39587482 2025 - 61074082 I
e dasNov3.JH570468            552337 6077 -   852752 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2206989 10 +  4569836 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907  0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=126392.000000
s hg38.chr17_JH159148v1_alt    43583 39 +    88070 GTAACTAGAGGGTAAGACCCATCAGGCAGGAAGTTCTGA
s panTro5.chr17             16354615 39 + 83181570 GTAACTAGAGGGTAAGACCCATCAGGCAGGAAGTTCTGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16259385 39 + 83442489 GTAACTAGAGGGTAAGACCCATCAGGCAGGAAGTTCTGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4106508 39 +  4267968 GTAactagagggtaagacccatcaggcaggaagttctga
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2092979 39 -  2193130 GTAACTAGAGGGTAAGACCCATCAGGCAGGAAGTTCTGA
i nomLeu3.chrUn_GL397460_1  C 0 T 7632
s cerAty1.NW_012006043v1     1999467 39 -  8458610 GTAACTAGAGGGTAAGACCCATCAGGCAGGAAGTTCTGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64938095 26 + 75148670 -----------GTA--TCCCATCAGGCAGGAAGTTCTGA
i chlSab2.chr16             C 0 C 0
s saiBol1.JH378271           1877338 39 +  3513951 gtagctagagagtcagatccattagtcaggaagttctga
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       12867 39 -  4077172 gtcactagagactcagatccattagtcaggaagttctga
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        6624 39 -    94492 gtaactagagggtcagatccattagtcaggaagttctga
i aotNan1.NW_018505111v1    C 0 C 0
e canFam3.chr9              39587482 2025 - 61074082 I
e manLeu1.NW_012106252v1     2184033 505 +  4244037 M
e dasNov3.JH570468            552337 6077 -   852752 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2206989 10 +  4569836 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907  0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=204649.000000
s hg38.chr17_JH159148v1_alt    43622 64 +    88070 GCTACTTCATCAGGCAATTATCTAAACTAACAGGAGTGCTGGCCAGTGATGAA-GGGAGTATAGA
s panTro5.chr17             16354654 64 + 83181570 GCTACCTCATCAGGCAATTATCTAGACCAACAGGAGTGCTGGCCAGTGATGAA-GGGAGTATAGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16259424 64 + 83442489 GCTACCTCATCAGGCAATTATCTAGACCAACAGGAGTGCTGGCCAGTGATGAA-GGGAGTATAGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4106547 65 +  4267968 gctacctcatcaggcaattatctagaccaacaggagtgctggccagtggtgaaggggagtataga
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085386 63 -  2193130 gttactccttctggaaattatctagagcagcaaaagtgctggacagtggtgaa-ggaagtatag-
i nomLeu3.chrUn_GL397460_1  T 7632 C 0
s cerAty1.NW_012006043v1     1999506 65 -  8458610 GCTACCTCATCAGGCAATTATCTAGACCAAGAGGAGTGCTGGTTAGTGGCGAAGGGGAATATAGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64938121 65 + 75148670 GCTACCTCATCAGGCAATTATCTAGACCAAGAGGAGTGCTGGTCAGTGGTGAAGGGGAGTATAGA
i chlSab2.chr16             C 0 C 0
s saiBol1.JH378271           1877377 64 +  3513951 gctactccttcaggcaattatctacatcaaccagagtgctggccaggggtgaa-gggaatataga
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       12906 64 -  4077172 gctactccttcaggcaattatctagatcaaccagagtgctggccaggggtgaa-gggaatataga
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        6663 64 -    94492 gctactccttcaggcagttatctagatcaaccagagtgctggccaggggtgaa-gggaatataga
i aotNan1.NW_018505111v1    C 0 C 0
e canFam3.chr9              39587482 2025 - 61074082 I
e manLeu1.NW_012106252v1     2184033 505 +  4244037 M
e dasNov3.JH570468            552337 6077 -   852752 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2206989 10 +  4569836 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907  0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=210897.000000
s hg38.chr17_JH159148v1_alt    43686 56 +    88070 ACTGGCGGAAACTGATGGAGATTATGAATCTCAGAAGCACCCTATTACAGCAGTAG
s panTro5.chr17             16354718 56 + 83181570 ACTGGCGGAAACTGATGGAGATTATGAATCTCAGAAGCACCCTATTACAGCAGTAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16259488 56 + 83442489 ACTGGCGGAAACTGATGGAGATTATGAATCTCAGAAGCACCCTATTAAAGCAGTAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4106612 56 +  4267968 actggcggaaactgatggagattatgaatctcagAAGCACCCTATTACAGCAGTAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2085449 56 -  2193130 acttttgataattaatggagattatgactgtcaggtgCATCCTATTATAGCAGCAG
i nomLeu3.chrUn_GL397460_1  C 0 I 9350
s cerAty1.NW_012006043v1     1999571 56 -  8458610 ACTGGTGGAAACTGATGGAGATTATGAATCTCAGAAGCACCCTATTACAGCAGCAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64938186 56 + 75148670 ACTAGTGGAAACTGATGGAGATTATGAATTTCAGAAGCACCCTATTACAGCAGCAG
i chlSab2.chr16             C 0 C 0
s saiBol1.JH378271           1877441 56 +  3513951 actggtggaaactgatggagattataaatctcagAATTAACTCATTACAGCAGCAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       12970 56 -  4077172 actggtggaaaccgatggagattatgaatttcagAAGGACTCCATTACAGCAGCAG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        6727 56 -    94492 actggtggaaactgatggagattatgaatctcagAAGGAACCCATTACAGCAGCAG
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            558414 55 -   852752 ACTGGTAGTAGAGGTGGAAGATTATGAAT-TCAGTTACATCTTTCCACAGCAGCAG
i dasNov3.JH570468          I 6077 C 0
e canFam3.chr9              39587482 2025 - 61074082 I
e manLeu1.NW_012106252v1     2184033 505 +  4244037 M
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2206989 10 +  4569836 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907  0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=16263.000000
s hg38.chr17_JH159148v1_alt    43742  7 +    88070 ---------------------TTTCTTt
s panTro5.chr17             16354774  7 + 83181570 ---------------------TTTCTTt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16259544  7 + 83442489 ---------------------TTTCTTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4106668  7 +  4267968 ---------------------TTTCTTt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2094855  7 -  2193130 ---------------------tctctct
i nomLeu3.chrUn_GL397460_1  I 9350 C 0
s cerAty1.NW_012006043v1     1999627  7 -  8458610 ---------------------tttcttt
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64938242  7 + 75148670 ---------------------tttcttt
i chlSab2.chr16             C 0 I 303
s saiBol1.JH378271           1877497  7 +  3513951 ---------------------TAtcttt
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       13026  7 -  4077172 ---------------------TAtcttt
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        6783  7 -    94492 ---------------------TATCTtt
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            558469 27 -   852752 TAACTGTAGCTTGTTTCACAGTCTCTT-
i dasNov3.JH570468          C 0 C 0
e canFam3.chr9              39587482 2025 - 61074082 I
e manLeu1.NW_012106252v1     2184033 505 +  4244037 M
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2206989 10 +  4569836 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907  0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=17513.000000
s hg38.chr17_JH159148v1_alt    43749 7 +    88070 tcccttc
s panTro5.chr17             16354781 7 + 83181570 tcccttc
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16259551 7 + 83442489 TCCCTTC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4106675 7 +  4267968 tcccttc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2094862 7 -  2193130 ttctttt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1999634 7 -  8458610 cttcttc
i cerAty1.NW_012006043v1    C 0 I 100
s saiBol1.JH378271           1877504 7 +  3513951 tctcttc
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       13033 7 -  4077172 tctcttc
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        6790 7 -    94492 tctcttc
i aotNan1.NW_018505111v1    C 0 I 7806
s dasNov3.JH570468            558496 7 -   852752 TTGCTTG
i dasNov3.JH570468          C 0 C 0
e canFam3.chr9              39587482 2025 - 61074082 I
e manLeu1.NW_012106252v1     2184033 505 +  4244037 M
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2206989 10 +  4569836 I
e chlSab2.chr16             64938249 303 + 75148670 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907 0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=-13638.000000
s hg38.chr17_JH159148v1_alt    43756  3 +    88070 cc-----------t
s panTro5.chr17             16354788 14 + 83181570 ccttcccttccctt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16259558  3 + 83442489 CC-----------T
i panPan2.chr17             C 0 I 322
s gorGor5.CYUI01015385v1     4106682  9 +  4267968 ccttccctt-----
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2094869  3 -  2193130 tct-----------
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s saiBol1.JH378271           1877511  3 +  3513951 ------ttt-----
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       13040  3 -  4077172 ------ttt-----
i cebCap1.NW_016107543v1    C 0 C 0
s dasNov3.JH570468            558503  3 -   852752 ------TCT-----
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1        6797 7806 -    94492 I
e canFam3.chr9              39587482 2025 - 61074082 I
e manLeu1.NW_012106252v1     2184033 505 +  4244037 M
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2206989 10 +  4569836 I
e chlSab2.chr16             64938249 303 + 75148670 I
e cerAty1.NW_012006043v1     1999641 100 -  8458610 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907  0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=23686.000000
s hg38.chr17_JH159148v1_alt    43759 29 +    88070 cccttcccttcccttcccttcct--------------------tccctt
s panTro5.chr17             16354802 49 + 83181570 cccttcccttcccttcccttcctttcccttcccttcccttccctccctt
i panTro5.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4106691 29 +  4267968 cccttcccttcccttcccttcct--------------------tccctt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2094872 28 -  2193130 -tctttctttctttttccttcct--------------------tccttc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s saiBol1.JH378271           1877514 29 +  3513951 tcctttctttgcatttctttctt--------------------tctctc
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       13043 29 -  4077172 tcctttcttttcctttctttgct--------------------tttctt
i cebCap1.NW_016107543v1    C 0 I 38
s dasNov3.JH570468            558506 25 -   852752 Gccttcctt---ccttccttcct--------------------tcctt-
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1        6797 7806 -    94492 I
e canFam3.chr9              39587482 2025 - 61074082 I
e manLeu1.NW_012106252v1     2184033 505 +  4244037 M
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2206989 10 +  4569836 I
e chlSab2.chr16             64938249 303 + 75148670 I
e cerAty1.NW_012006043v1     1999641 100 -  8458610 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907  0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I
e panPan2.chr17             16259561 322 + 83442489 I

a score=9392.000000
s hg38.chr17_JH159148v1_alt    43788 36 +    88070 c-ccttcctttcccctcccct---ccccacccctcccctc
s panTro5.chr17             16354851 36 + 83181570 c-ctttcctttcccctcccct---ccccacccctcccctc
i panTro5.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4106720 39 +  4267968 c-ccttcctttcccctcccccccacccctcccctcccctc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2094900 40 -  2193130 ctctttccttgattcttcctttctttctttctttcttttt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s saiBol1.JH378271           1877543 16 +  3513951 -tccttccttccttctt-----------------------
i saiBol1.JH378271          C 0 C 0
s dasNov3.JH570468            558531 34 -   852752 --ccttccttccttccttccttccttccttccttcc----
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1        6797 7806 -    94492 I
e cebCap1.NW_016107543v1       13072 38 -  4077172 I
e canFam3.chr9              39587482 2025 - 61074082 I
e manLeu1.NW_012106252v1     2184033 505 +  4244037 M
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2206989 10 +  4569836 I
e chlSab2.chr16             64938249 303 + 75148670 I
e cerAty1.NW_012006043v1     1999641 100 -  8458610 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907  0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I
e panPan2.chr17             16259561 322 + 83442489 I

a score=1987.000000
s hg38.chr17_JH159148v1_alt    43824 4 +    88070 -ccct
s panTro5.chr17             16354887 4 + 83181570 -ccct
i panTro5.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4106759 4 +  4267968 -ccct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2094940 4 -  2193130 -ttct
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1999741 4 -  8458610 -ctct
i cerAty1.NW_012006043v1    I 100 C 0
s saiBol1.JH378271           1877559 4 +  3513951 -tcct
i saiBol1.JH378271          C 0 C 0
s dasNov3.JH570468            558565 4 -   852752 ttcc-
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1        6797 7806 -    94492 I
e cebCap1.NW_016107543v1       13072 38 -  4077172 I
e canFam3.chr9              39587482 2025 - 61074082 I
e manLeu1.NW_012106252v1     2184033 505 +  4244037 M
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2206989 10 +  4569836 I
e chlSab2.chr16             64938249 303 + 75148670 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907 0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I
e panPan2.chr17             16259561 322 + 83442489 I

a score=69088.000000
s hg38.chr17_JH159148v1_alt    43828 60 +    88070 -TTCTTTCT-TTCTTTC---------CTT-ttccttccttccttcccct---tccttccttccttccttccttca
s panTro5.chr17             16354891 61 + 83181570 -ctctttctcttctttc------tttctt-tttctttctttctttcCTT------ttccttccttccttccttca
i panTro5.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4106763 57 +  4267968 -cTCTTTCTCTTCTTTC------TCTCTT-TTTCTTTCTTTCCTT----------ttccttccttccttccttca
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2094944 60 -  2193130 -ttctttct-ttctttc------tttctt-cttttttctttctttcttt------ccttttccttccttccttca
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1999745 72 -  8458610 -ttctttct-ttctttctctctctctctc-cttccttccttccttccttccttccttccttccttccttccttcc
i cerAty1.NW_012006043v1    C 0 I 4
s saiBol1.JH378271           1877563 59 +  3513951 -tccttcct-tccctcc------ttcttc-ctttcttccttccttcctt---tcttccctccctccctctc----
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       13110 59 -  4077172 -tccttcct-tccttcc------ttcctt-ccttcctccctccctccct---ccctccctccctcccttcc----
i cebCap1.NW_016107543v1    I 38 C 0
s dasNov3.JH570468            558569 64 -   852752 ttccttcct-tccttcc------ttccttccttccttccttccttccttccttccttccttccttccttcc----
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1        6797 7806 -    94492 I
e canFam3.chr9              39587482 2025 - 61074082 I
e manLeu1.NW_012106252v1     2184033 505 +  4244037 M
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2206989 10 +  4569836 I
e chlSab2.chr16             64938249 303 + 75148670 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907  0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I
e panPan2.chr17             16259561 322 + 83442489 I

a score=39640.000000
s hg38.chr17_JH159148v1_alt    43888 14 +    88070 ttccttccttcctt
s panTro5.chr17             16354952 14 + 83181570 ttccttccttcctt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16259883 14 + 83442489 ttccttccttcctt
i panPan2.chr17             I 322 C 0
s gorGor5.CYUI01015385v1     4106820 14 +  4267968 ttccttccttcctt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2095004 14 -  2193130 ttctttccttcctt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1999821 14 -  8458610 ttccttccttcctt
i cerAty1.NW_012006043v1    I 4 I 68
s saiBol1.JH378271           1877622 14 +  3513951 tccctccttccttt
i saiBol1.JH378271          C 0 I 2
s cebCap1.NW_016107543v1       13169 14 -  4077172 ttcctttcttcctt
i cebCap1.NW_016107543v1    C 0 I 2
s dasNov3.JH570468            558633 14 -   852752 ttccttcctttctt
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1        6797 7806 -    94492 I
e canFam3.chr9              39587482 2025 - 61074082 I
e manLeu1.NW_012106252v1     2184033 505 +  4244037 M
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2206989 10 +  4569836 I
e chlSab2.chr16             64938249 303 + 75148670 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907  0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=59459.000000
s hg38.chr17_JH159148v1_alt    43902 46 +    88070 ------TTCA--CTCTCTTTCCTT-------------CTGTC-------TCTTGCTCTCTTTCTTCCTC-------CGTTC------------
s panTro5.chr17             16354966 46 + 83181570 ------TTCA--CTCTCTTTCCTT-------------CTGTC-------TCTTGCTCTCTTTCTTCCTC-------CGTTC------------
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16259897 46 + 83442489 ------ttca--ctctctttcctt-------------ctgtc-------tcttgctctctttcttcctc-------cgttc------------
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4106834 46 +  4267968 ------TTCA--CTCTCTTTCCTT-------------CTGTC-------TCTTGCTCTCTTTCTTCCTC-------CGTTC------------
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2095018 48 -  2193130 ------ttcattctctctttcctt-------------ctctc-------tcttgctccctttcttcctc-------tgttt------------
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s saiBol1.JH378271           1877638 39 +  3513951 ------ttct--ttctttcttATT-------------CTCTC-------TC--GCTCTCTTTCTTCCTC------------------------
i saiBol1.JH378271          I 2 C 0
s cebCap1.NW_016107543v1       13185 41 -  4077172 ------ttcc--ctccttcttatt-------------ctctc-------tcttgctctctttcttcctc------------------------
i cebCap1.NW_016107543v1    I 2 C 0
s dasNov3.JH570468            558647 91 -   852752 ttttctttct--ttcTCTTTCcttgcttgtttgcttgctttcttgcttttcttgctttctctctttttctctagctcattccatcccccatcc
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1        6797 7806 -    94492 I
e canFam3.chr9              39587482 2025 - 61074082 I
e manLeu1.NW_012106252v1     2184033 505 +  4244037 M
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2206989 10 +  4569836 I
e chlSab2.chr16             64938249 303 + 75148670 I
e cerAty1.NW_012006043v1     1999835 68 -  8458610 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907  0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=2727257.000000
s hg38.chr17_JH159148v1_alt    43948 732 +    88070 ----CTTTCTTCCTGTCTGTGTATA--------------------------TTGTCTTCTT-CCCATATCTTTCCTAGTTTTTTCCTCCTCTCTCACCTTCTGTTCCTCCTCTTCCTCCTCC---TCCTTTTTCTCCTAGAGTTCATGGC----TGTCCATTACATTTAAGAAGGAAAG-------------------------ATTGGACTTGAA---TGGAGCAAATGTT---------ACTGTAGACAGGTCTTCATTACCATACCTGTATATCATGGAACTTAGGGTGCTCATACCAATTTCCATCTGCCTGAATCTGCATCTCTGTGCCTTAGGGCTCTTGTATTGCAACTACAGAAAGTCATGTCACCTGTGCACACTACAGGGAGAAAAATATTCAACTGAAAATTCTAAAgagtggatttatacagactctagcttcttcactgctgaagtttgagaattcaaagttgtgtgtttttcatcatttctgaaaaatttccctttagcttaagcttcagttgatctctgtgat-actggcttaatagtatacccttttctgtatcactgccacaatcccttct-ggcctgttctgccc-ttcctaatacactgtattcattggaatctttttctcagagtatcttctgggaaaaaccaaactatgacaTTaca-----tctctcagcctcaatttcctcatctctacaattagaacactaatgcctactttgaaagttttttcaataattaatgataatgtacataaaagattta-cacaatatccatcaaatgataggcaactgaaaaca
s panTro5.chr17             16355012 732 + 83181570 ----CTTTCTTCCTGTCTGTGTATA--------------------------TTGTCTTCTT-CCCATATCTTTCCTAGTTTTTTCCTCCTCTCTCACCTTCTGTTCCTCCTCTTCCTCGTCC---TCGTTTTTCTCCTAGAGTTCATGGC----TGTCCATTACATTTAAGAAGGAAAG-------------------------ATTGGACTTGAA---TGGAGCAAATGTT---------ACTGTAGACAGGTCTTCATTACCATACCTGTATATCATGGAACTTAGGGTGCTCATACCAATTTCCATCTGCCTGAATCTGCATCTCTGTGCCTTAGGGCTCTTGTATTGCAACTACAGAAAGTCATGTCACCTGTGCACACTACAGGGAGAAAAATATTCAACTGAAAATTCTAAAgagtggatttatacagactctagcttcttcactcctgaagtttgagaattcaaagttgtgtgtttttcatcatttctgaaaaatttccctttagcttaagcttcagttgatctctgtgat-actggcttaatagtatgcccttttctgtatcactgccacaatcccttct-gtcctgttctgccc-ttcctaatacactgtattcattggaatctttttctcagagtatcttctgggaaaaaccaaactatgacaTTaca-----tctctcagcctcaatttcctcatctctacaattagaacactagtgcctactttgaaagttttttcaatgattaatgataatgtacataaaagattta-cacaatatccatcaaatgataggcaactgaaaaca
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16259943 732 + 83442489 ----ctTTCTTCCCGTCTGTGTATA--------------------------TTGTCTTCTT-CCCATATCTTTCCTAGTTTTTTCCTCCTCTCTCACCTTCTGTTCCTCCTCTTCCTCGTCC---TCCTTTTTCTCCTAGAGTTCATGGC----TGTCCATTACATTTAAGAAGGAAAG-------------------------ACTGGACTTGAA---TGGAGCAAATGTT---------ACTGTAGACAGGTCTTCATTACCATACCTGTATATCATGGAACTTAGGGTGCTCATAccaatttccatctgcctgaatctgcatctctgtgccttagggctctTGTATTGCAACTACAGAAAGTCATGTCACCTGTGCACACTACAGGGAGAAAAATATTCAACTGAAAATTCTAAAGAGTGGATTTATACAGACTCTAGCTTCTTCACTCCTGAAGTTTGAGAATTCAAAGTTGTGTGTTTTTCATCATTTCTGAAAAATTTACCTTTAGCTTAAGCTTCAGTTGATCTCTGTGAT-ACTGGCTTAATAGTATGCCCTTTTCTGTATCACTGCCACAATCCCTTCT-GTCCTGTTCTGCCC-TTCCTAATACACTGTATTCATTGGAATCTTTTTCTCAGAGTATCTTCTGGGAAAAACCAAACTATGACATTaca-----tctctcagcctcaatttcctcatctctacaattagaacactaatgcctactttgaaagttttttcaataattaatgataatgtacataaaaaattta-cacaatatccatcaaatgataggcaactgaaaaca
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4106880 732 +  4267968 ----CTTACTTCCTGTCTGTGTATA--------------------------TTGTCTTCTT-CCCATATCTTTCCTAGTTTTTtcctcctctctcaccttctgttcctcctcttcctcctcc---tcctttttctcctAGAGTTCATGGC----TGTCCATTACATTTAAGAAGGAAAG-------------------------ATTGGACTTGAA---TGGAGCAAATGTT---------ACTGTAGACAGGTCTTCATTACCATACCTGTATATCATGGAACTTAGGGTGCTCATACCAATTTGCATCTGCCTGAATCTGCATCTCTGTGCCTTAGGGCCCTTGTATTGCAACTACAGAAAGTCATGTCACCTGTGCACACTACAGGGAGAAAAATATTCAACTGAAAATTCTAAAgagtggatttatacagactctagcttcttcgctcctgaagtttgagaattcaaagttgtgtgtttttcatcatttctgaaaaatttccctttagcttaagtttcatttgatctctgtgat-actggcttaatagtatacccttttctgtatcactgccacagtcccttct-ggcgtgttctgccc-ttcctaatacattgtattcattggaatctttttctcagagtatcttctgggaaaaaccaaactatgacaTTaca-----tctctcagcctcaatttcctcatctctacaattagaacactaatgcctactttgaaagttttttcaataattaatgataatgtacgtaaaagattta-cacaatatccatcaaatgataggcaactgaaaaca
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2095066 731 -  2193130 ----ctttcttcctgtctgtgtata--------------------------ttgtcttctt-cccatatctttcctagttttttcctcctctctcaccttctgttcctcctcttcctccctc---tcctctttctCCTAGAGTTCATGGC----TGTCCACTACATTTAAGAAGGAAAG-------------------------ACTGGACTTGAA---TGGAGCAAATGTT---------ACTGTAGACAGGTCTTCATTACCACACCTGTATATCATGGAACTTAGTGTGCTCGTGCCAATTTCCGTCTGCCTGAATCTGCATCTCTGTGCCTTAGGGCTCTTGTATTGCAACTACAGAAAGTCATGTCACCTGTGCACGCTACAGGGCGAAAAATATTCAAGTGAAAATTCTAAAGAGTGGATTTATACAGACTCTAACTTCTTCACTCCTGAAGTCTGAGAGTTCAAAGTTGCGTGTTTTTCATCATTTCTGAAAAATTTCCCTTTAGCTTAAGCTTCAGTTGATCTCTATGAT-ACTGGCTTAATAGTATACCCTTTTCTGTATCACTTCCACAATCCCTTCT-GGCGTGTTCTGCCC-TTCCTAATACACTGTATTGATTGGAATCTTTTTCACAGAGTATCTTCTGGG-AAAACCAAACTATGacattaca-----tctctcagcctcaatttcctcatctctaaaattagaacactaatgcctactttgaaagttttttcaataattaatggtaatgtacataaaggattta-cacaatatccatcaaatgataggcaactgaaaaca
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     1999903 735 -  8458610 ----ctttcttcctctttgtgtata--------------------------ttgtcttctt-cccgtatctttcttagttttttcctcctctgtcaccttctgttcctcctcttcCTCCTCC---TCCAGTTTCTCCTGGAGTTCATGGC----AGTCCACTACATTTAAGAAGGAAAG-------------------------ATTGGACTTGAA---TGGAGCAAATGTT---------ACTGTAGACAGGTCTTCATTACCATACCTGTATATCATGGAACTTAGTGTGCTCTTACCAATTTCCATCTGCCTGAATCTGCACCTCTGTGCCTTAGGGCTCTTGTATTGCAACTACAAAAAGTCATGTCACCTGTGCATGCTACAGGGAGAAAAATActcaactgaaaatactaaagagtggatttataaagactctagcttcttcactcctgaagtttgagaattcaaagttgtgtgtttttcatcatttctgataaattttcctttagcttaagcttcagttgatctctgtggt-actggcttaatagtata-ccttttCTGTATCACTTCCACAGTCCCTTCT-GGTGTGATCTGCCC-TTCCGAGTACACTATATTCATTGGTATCTTTTTCTCAGAGTATCTTCTGGGAAAAACCAAACTATGACACTTCATTacctctctcagcctcaatttcctcatctctacaattggaacactaatgcctactttgaaagctttttcaatacttaatgataatgtacataaaagattta-cacaatatccgtcaagtgataggccactgaaaac-
i cerAty1.NW_012006043v1    I 68 C 0
s chlSab2.chr16             64938552 736 + 75148670 ----ctttcttcctctctgtgtata--------------------------ttgtcttctt-cccgtatctttcttagttttttcctcctctctcaccttctgttcctcctcttcctcctcc---tcctctttctcctGGAGTTCATGGC----TGTCCACTACATTTAAGAAGGAAAG-------------------------ACTGGACTTGAA---TGGAGCAAATGTT---------ACTGTAGACAGGTCTTCATTACCATACCTGTATATCATGGAACTTAGTGTGCTCTTACCAATTTCCATCTGCCTGAATCTGCACCTCTGTGCCTTAGGGCTCTTGTATTACAACTATAAAAAGTCATGTCACCTGTGCATGCTAAAGGGAGAAAAATACTCAACTGAAAATTCTAAAgagtggatttataaagagtctagcttcttcactcctgaagtttgagaattcaaagttgtgtgtttttcatcatttctgataaattttcctttagcttaagcttcagttgatctctgtggt-actggcttaatagtatacccttttctgtatcacttccacagtcccttct-ggtgtgatctgccc-ttcctagtacactatattcattggtatctttttctcagagtatcttctgggaaaaaccaaactatgacattacattacctctctcagcctcaatttcctcatctctacaattggaacactaatgcctactttgaaagttttttcaatacttaatgataatgtacataaaagattta-cacaatatgcatcaaatgataggcaactgaaaac-
i chlSab2.chr16             I 303 C 0
s manLeu1.NW_012106252v1     2184553 735 +  4244037 ----CTTTCTTCCTCTCTGTGTATA--------------------------TTGTCTTCTT-CCCGTATCTTTCTTAGTTTTTtcctcctctgtcaccttctgttcctcctcttcctcctcc---tcctctttctcctGGAGTTCATGGC----AGTCCACTACATTTAAGAAGGAAAG-------------------------ATTGGACTTGAA---TGGTGCAAATGTT---------ACTGTAGACAGGTCTTCATTACCATACCTGTATATCATGGAACTTAGTGTGCTCTTACCAATTTCCATCTGCCTGAATCTGCACCTCTGTGCCTTAGGGCTCTTGTATTGCAACTACAAAAAGTCATGTCACCTGTGCATGCTATAGGGAGAAAAATACTCAACTGAAAATACTAAAGAGTGGATTTATAAAGACTTTAGCTTCTTCACTCCTGAAGTTTGAGAATTCAAAGTTGTGTGTTTTTCATCATTTCTGATAAATTTTCCTTTAGCTTAAGCTTCAGTTGATCTCTGTGGT-ACTGGCTTAATAGTATA-ccttttctgtatcacttccacagtcccttct-ggtgtgatctgccc-ttccgagtacactatattcattggtatctttttctcagagtatcttctgggaaaaaccaaactatgacaTTTCATTacctctctcagcctcaatttcctcatctctacaattggaacactaatgcctactttgaaacctttttcaatacttaatgataatgtacataaaagattta-cacaatatccgtcaagtgataggcaactgaaaac-
i manLeu1.NW_012106252v1    M 505 C 0
s saiBol1.JH378271           1877677 723 +  3513951 -------------------TGTATT--------------------------TTTTATTGTT-CTCATTTCTTTCTTAGTTtttttctcctctctcaccttctgtttctcctcttcctcctccttttcctctttcttctAAGGTTCATGAT----TGTCCACCAAATTTAAGAAGCAAAG-------------------------ATTGGATTTGAG---TGGAGCAAATGGT-------AGATCATAGACTGGTCTTCATTACCACACCTGTTTATCATGAAACCTagtgtgctcggaccaattttcatctgccagcatctgcttctctgtcccttagggctctTGTATTGCAAATACAGAAAGTTATGTCACCTGTACATGCTAGAGGGAGAAAAATATTCAACTAATGATTCTGGAGAGTGGATTTATGAAGACTCCAGCTTTCTCATTCCTGAAGTAGGACAATTCTGATTTGTGTGTTTTTCATCATTTCTGATAAATTTCCCTTTAGCTTAAGCTTCAGTCGATCTCTGTCAT-GCTGACATCATAGTCTACCCTTTTCTGTATCACTTCCATAATCCCTCCT-GGTGCGATCTGCAC-TTCCTGATACACTACATGCATTGGAACCTTTTTCTCAGAGTATCTTCTGAGAAAAACCAAACTATGACAttacattacttctcttagcctcagtttcctcatgtctatgtttggaacactaatgcctgttttgaaagttt----aagaattaatcataatgtacataaaagattta-gtcaatatccatcagataataggcaactgaaaaca
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       13226 726 -  4077172 -------------------tatatt--------------------------ttttattttt-ctcatttctttcttagtttttttctcctctctcaccttctgttcctcctcttcctcctccttttcctctttcttCTAAGGTTCGTGAT----TTTTCACCACATTTACGAAGCAAAG-------------------------ATTGGATTTGAG---TGGAGCAAATGGT-------AGATCATAGACTGGTCTTCATTACCACACCTGTTTATCATGAAACCTAGTGTGCTCGGACCAATTTCCATCTGCCAGAATCTGCATCTCTGTCCCATAGGTCTCTTGTATTGCAAACACAGAAAGTCATGTCACCTGTACATGCTAGAGGGAGAAAAATATTCAACTAATGATTCTGGAGAGTGGATTTATGAAGACTCCAGCTTTCTCATTCCTGAAGTAGGACAATTCTAATTTCTGCGTTTTTCATCATTTCTGATAAAATTCCCTTTAGCTTAAGCTTCAGTTGATCTCTGTCAT-ACTGGCTTCATAGCCTACTCTTTTCTGTATCACTTCCATAATCCCTCCT-GGTGTGATCTGCAC-TTCCTGATACGCTACCTGCATTGGAA-CTTTTTCTCAGAGTATCTTCTGAGAAAAACCAAACTATGACAttacattacttctcttggcctcagtttcctcatgtctatgtttggaacactaatgcctattttgaaagtttgttcaagaattaatgataacgtacttaaaagattta-gtcaatatccatcaaataataggcaactgaaaaca
i cebCap1.NW_016107543v1    C 0 C 0
s dasNov3.JH570468            558738 800 -   852752 ctcccttctttccttcttctttccggtcaaatcttttaactcccagtcaccttctctccttccccatttccgtctatttcttcaactcctc-ctctccttcttgtcctctttatcttcctct---acttcttgcttcttATTTTTAAAAAATTGTATACACGACTTTGAATAGGAAAAACAGTTTTTAGTAAGCCTAACGTGGTATGTGATTCAAACTGTGAAGGAAAAGTTGTATTCTACATTATATTCTGATCAGCA-----ACCCATGTATTTTAT----CTTGTTGTATTTGAATTATCTTCCATCTTCCAATATCTGCACCTCTCTTCCTAACAGCTCTTTTTAAGCAAGTATAGAAAGTCATGTGTCCTGTGCTTACCTTGACCAGAAAAACTGTAAACCCAAAATTTTGgggagttggctt-taagaaccccagcctcctaatttctcaagaagaatagtttcaaactttgtgttttacatta--tcttaaagcttccattcaagtttaagcctcagttgcccactgtgatggccagcttcatagtgtaattttccctgtgccactttcccaattacttatcagtgtaatctccactttcctaATGAATTACTTTGACTGGAATCTTCCTCTCGACATTGTACATGGGAGAAACTATACCATGACAttactttaactctcttagctttgatttcctcgtctctaaaagggagatattaatatctaccatgccagcttcTTCAAGAATTTGAGATTATCTATACAGAACATCTAGTCCAATATCTAGTGAGAAATGGAAAACCCAGAACA
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1        6797 7806 -    94492 I
e canFam3.chr9              39587482 2025 - 61074082 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2206989  10 +  4569836 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907   0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=576487.000000
s hg38.chr17_JH159148v1_alt    44680 170 +    88070 tattatttcttttCTCTCCAG-AAATTCCTAAACTAATTTTAATGTTGATGATAAGAATATATTTATAATAATTAACTAGATCAAC----tttttttcttttactttaagttccaggacacatgtgcagaatgtgcaggtttgttgagtaggtatacatgtgccatgattgtttg
s panTro5.chr17             16355744 171 + 83181570 tattatttcttttCTCTCCAG-AAATTCCTAAACTAATTTTAATGTTGATGATAAGAATATATTTATAATAATTAACTAGATCAAC---ttttttttcttttactttaagttccaggacacatgtgcagaatgtgcaggtttgttgagtaggtatacacgtgccatgattgtttg
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16260675 170 + 83442489 tattgtttcttTTCTCTCCAG-AAATTCCTAAACTAATTTTAATGTTGATGATAAGAATATATTTATAATAATTAACTAGATCAAC----tttttttcttttactttaagttccaggacacatgtgcagaatgtgcaggtttgttgagtaggtatacacgtgccatgattgtttg
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4107612 171 +  4267968 tattatttcttttCTCTCCAG-AAATTCCTAAACTAATTTTAATGTTGATGATAAGAATATATTTATAATAATTAACCAGATCAAC---ttttttttcttttactttaagttccaggacacatgggcagaatgtgcaggtttgttgagtaggtatacatgtgccatgattgtttg
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2095797 170 -  2193130 tattatttcttttCTCTCCAGAAAATTCCTAAACTAATTTTAATGTTGATGATAAGAGTATATTTATAATAATTAATTAGATCAAA-----ttttttcttttaatttaagttccaggacacatgtgcagaatgtgcaggtttgttgagtaggtatacatgtgccatgattgtttg
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s cerAty1.NW_012006043v1     2000638 172 -  8458610 -attagttcttttCTCTCCAGAAAATTCCTAAACTAATTTTAATGTTGATGATAAGAATATATTTCTAATAATTAACTAGATCTACt--ttttttttcttttactttaagttcctggacacatgtgcagaatgtgcaggcttgttgaataggtatacatgtgccatgattgtttg
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64939288 171 + 75148670 -attagttcttTTCTCTCCAGAAAATCCCTAAACTAATTTTAATGTTGATGATAAGAATATATTTCTAATAATTAACTAGATCTAC---ttttttttcttttactttaagttcctggacacatgtgcagaatgtgcaggcttgttgaataggtatacatgtgccatgattgtttg
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2185288 172 +  4244037 -attagttcttttCTCTCCAGAAAATTCCTAAACTAATTTTAATGTTGATGATAAGAATATATTTCTAATAATTAACTAGATCTACt--ttttttttcttttactttaagttcctggacacatgtgcagaatgtgcaggcttgttgaataggtatacatgtgccatgattgtttg
i manLeu1.NW_012106252v1    C 0 C 0
s saiBol1.JH378271           1878400 170 +  3513951 tattagttcttttCTATCTAGAAAATTCCTAAACTAATTTTAATATTGATGATAAGAATATGTTTATAACAAATAACTAGGTCAACTAACtttttttct-----tttaacttctgggatgcatatggagaatgtgcgtgcttgttacataggtatacaaatgccatggttgtttg
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       13952 170 -  4077172 tattagttcttttCTGTCCAGAAAATTCCTAAACCAATTTTAACGTTGATGATAAGAATATGTTTATAATAAATAACTAGGTCAACTAACTTTttttct-----tttaacttctgggatgcatatggagaatgtgcatgtttgttacatatgtatacaagtgccacagttgtttg
i cebCap1.NW_016107543v1    C 0 C 0
e aotNan1.NW_018505111v1        6797 7806 -    94492 I
e canFam3.chr9              39587482 2025 - 61074082 I
e dasNov3.JH570468            559538   0 -   852752 C
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2206989  10 +  4569836 I
e macNem1.NW_012014910v1     2116948 7525 + 10377808 T
e macFas5.chr16             28052907   0 - 80997621 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=1405449.000000
s hg38.chr17_JH159148v1_alt    44850 264 +    88070 ctgcacctatcaacctgtcctctaggtcttaagccctgcatgcattaggtatttgtcctaatgctctccctccccttgcccccgacccccccaacaggccctggtgtgtgatgttcccctccctgtgtctgtgtgttctggttgatcaactcccacttatgagtgagatcatgtggtgtttggttttctgctcctgtgttactttgctgagaatgatggcttccagcttcttccatgtccctgcaaaggatatgaactcattgt
s panTro5.chr17             16355915 264 + 83181570 ctgcacctatcaacctgtcctctaggtcttaagccctgcatgcagtaagtatttgtcctaatgctctccctccccttgcccccgacccccccaacaggccctggtgtgtgatgttcccctccctgtgtctgtgtgttctggttgatcaactcccacttatgagtgagaccatgcggtgtttggttttctgctcctgtgttactttgctgagaatgatggcttccagcttcttccatgtccctgcaaaggatatgaactcattgt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16260845 264 + 83442489 ctacacctatcaacctgttctctaggtcttaagccctgcatgcattaagtatttgtcctaatgctctccctccccttgcccccgacccccccaacaggccctggtgtgtgatgttcccctccctgtgtctgtgtgttctggttgatcaactcccacttatgagtgagatcatgcggtgtttggttttctgctcctgtgttactttgctgagaatgatggcttccagcttcttccatgtccctgcaaaggatatgaactcattgt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4107783 264 +  4267968 ctgcacctatcaacctgtcctctaggtcttaagccctgcatgcattaggtatttgtcctaatgctctccctcccctttcccccgacccccacaacaggccctggtgtgtgatgttcccctccctgtgtctgtgtgttctggttgatcaactcccacttatgagtgagatcatgcggtgtttggttttctgctcctgtgttactttgctgagaatgatggcttccagcttcttccatgtccctgcaaaggatatgaactcattgt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2095967 251 -  2193130 ctgcacctatcaacctgtcctctaggtcttaagccctgcatgcattaggtgtttgtcctaatgctctccctccccttgcccccgaccccctcaacaggccctgatgtgtgatgttcccctccctgtgtccgtgtgttctcgttgatcaactcccacttatga-------------gtgtttggttttctgctcctgtgttactttgctgagaatgatggcttccagcttcttccatgtccctgcaaaggacatgaactcattct
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28052907 260 - 80997621 ctgcacctatcaacctgtcctctaggtcttaaaccctacatgcattaggtatttgtcctaatgctctcactccccttgcctccggcccccccgacaggccctggtgtgtgatgttcccctccctgtgtccatgtgttctcgttgatcagctcccacttatgagtgagatcatgcggtgtttggttttccgctcctgtgttactttgctgagaatgatggcttccagcttcttccatgtctctgcaaaggacatgaactca----
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2109423 260 + 10377808 ctgcacctatcaacctgtcctctaggtcttaaaccctacatgcattaggtatttgtcctaatgctctcactccccttgcctccggcccccccgacaggccctggtgtgtgatgttcccctccctgtgtccatgtgttctcgttgatcagctcccacttatgagtgagatcatgcggtgtttggttttccgctcctgtgttactttgctgagaatgatggcttccagcttcttccatgtctctgcaaaggacatgaactca----
i macNem1.NW_012014910v1    T 7525 C 0
s cerAty1.NW_012006043v1     2000810 260 -  8458610 ctgcacctatcaacctgtcctctaggtcttaaaccctacatgcattaggtatttgtcctaatgctctcactccccttgcctccggcccccccgataggccctggtgtgtgatgttcccctccctgtgtccatgtgttctcattgatcaactcccacttacgagtgagatcatgcggtgtttggttttccgctcctgtgttactttgctgagaatgatggcttccagcttcttccatgtctctgcaaaggacatgaactca----
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64939459 260 + 75148670 ctgcacctatcaacctgtcctctgggtcttaaaccctacatgcattaggtatttgtcctaatgctctcactccccttgcctccagcacccccgacaggccctggtgtgtgatgttcccctccctgtgtccgtgtgttctcgttgatcagctcccacttatgagtgagatcatgcggtgtttagttttctgctcctgtgttactttgctgagaatgatggcttccggcttcttccatgtccctgcaaaggacatgaactca----
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2185460 260 +  4244037 ctgcacctatcaacctgtcctctaggtcttaaaccctacatgcattaggtatttgtcctaatgctctcactccccttgcctccggcccccccgataggccctggtgtgtgatgttcccctccctgtgtccgtgtgttctcgttgatcaactcccacttatgagtgagatcatgtggtgtttggttttccgctcctgtgttactttgctgagaatgatggcttccagcttcttccatgtctctgcaaaggacatgaactca----
i manLeu1.NW_012106252v1    C 0 C 0
s saiBol1.JH378271           1878570 261 +  3513951 ctgcacctatcaacccatcatctaggtcttaagccc--agcatgttagatatttgtcctaatgctctccctccttttgccccctaccctct-gacaggccctggtgtgtgatgctcccttccttgtgtgcatgtgttctcattgatcaacttccacttatgagggagaacatgtggtgtttggtttactgttcttgtgttagtttgctgagaatgatggcttccagcttcatccatgtccctgcaaaggacacgatctcttttt
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       14122 263 -  4077172 ctgcacctatcaacccgtcatctaggtcttaagccctgaatgtgttagatatttgtcctaatgctctccctccttttgccccctaccctct-gacaggccctggtgtgtgatgctcccttccttgtgtccatgtgttctcattggtcaactcccacttatgagtgagaacatgcggtgtttggttttctgttcttgtgttagtttcctgagaatgatggcttccagcttcatccatgtccctgcaaaggacatgatctcttttt
i cebCap1.NW_016107543v1    C 0 C 0
e aotNan1.NW_018505111v1        6797 7806 -    94492 I
e canFam3.chr9              39587482 2025 - 61074082 I
e dasNov3.JH570468            559538   0 -   852752 C
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2206989  10 +  4569836 I
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=2751343.000000
s hg38.chr17_JH159148v1_alt    45114 425 +    88070 tttt-----tatggctgcataggattccatggtttatatgtgccacattttctttatccagtctatcactgatgggcatttgggttggttccaagtctttgctattgtaaatactgctgcaataaacatatatgtgcatgtgtttttatagtagaatcatttatattcctttgagtatatacccggtaataggattgctgagtcaaatgg-tttttc-tggttctagatccttgaggaattgccacactgtcttacacagtggttgaactaattcactatcccaccaacagtgt-aaaagcattcctatttctccacagcctctccagcatctattgtttcctgactttttaataatcaccattatgactggcatgagatggtatctcaatgtggttttgatttgcatttctctaatgatcaatgatgatgag
s panTro5.chr17             16356179 426 + 83181570 tttt-----tatggctgcataggattccatggtgtatatgtgccacattttctttatccagtctatcactgatgggcatttgggttggttccaagtctttgctattgtaaatactgctgcaataaacatatatgtgcatgtgtttttatagtagaatcatttatattcctttgagtatatacccggtaataggattgctgagtcaaatggttttttc-tggttctagatccttgaggaattgccacactgtcttacacagtggttgaactaattcactatcccaccaacagtgt-aaaagcgttcctatttctccacagcctcgccagcatctattgtttcctgactttttaataatcaccattatgactggcatgagatggtatctcaatgtggttttgatttgcatttctctaatgatcaatgatgatgag
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16261109 422 + 83442489 tttt-----tatggctgcataggattccatggtgtatatgtgccacattttctttatccagtctatcactgatgggcatttgggttggttccaagtctttgctattgtaaatactgctgcaataaacatatatgtgcatgtgtttttatagtagaatcatttatattcctttgagtatata---ggtaataggattgctgagtcaaatgg-tttttc-tggttctagatccttgaggaattgccacactgtcttacacagtggttgaactaattcactatcccaccaacagtgt-aaaagcgttcctatttctccacagcctcgccagcatctattgtttcctgactttttaataatcaccattatgactggcatgagatggtatctcaatgtggttttgatttgcatttctctaatgatcaatgatgatgag
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4108047 425 +  4267968 tttt-----tatggctgcataggattccatggtgtatatgtgccacattttctttatccagtctatcactgatgggcatttgggttggttccaagtctttgttattgtaaatactgctgcaataaacatatatgtgcatgtgtttttatagtaggatcatttatattcttttgagtatatacccggtaataggattgctgagtcaaatgg-tttttc-tggttccagatccttgaggaattgccacactgtcttacacagtggttgaactaattcactatcccaccaacagtgt-aaaagcgttcctatttctccacagcctcgccagcatctattgtttcctgactttttaataatcaccattatgactggcatgagatggtatctcaatgtggttttgatttgcatttctctaatgatcagtgatgatgag
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2096218 425 -  2193130 tttt-----tatggctgcataagatttcatggtgtatatgtgccacgttttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctattgtaaatactgcagcaataaacatatatgtgcatgtgtttttatagtagaatcatttatattcctttgagtatatacccagtaataggattgctgagtcaaatgg-tttttc-cggttctagatccttgaggaattgccacactgtcttacacagtggttgaactaatttacaatctcaccaacagtgt-aaaagcattcctacttctccacagcctcgccagcatctattgtttcctgactttttaataattaccattatgactggcatgacatggtagctcattgtggtttcgatttgcatttctctaatgatcaatgatgatgag
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28053167 426 - 80997621 tttt-----tatggctgcataggattctatggtgtatatgtgccacattttctttatccagtctgtcatcgatgggcatttgagttggttccaagtctttgctaatgtaaatactgctgcagtaaacatatatgtgcatgtgcttttatagtagaatcatttacattcctttgagtatgtacccagtaatgggattgctgagtcaaatgg-tatttc-tggttgtagatccttgtggaattgccacactgtcttacacagtggttgaactaatttacaatcccaccaacagtgtaaaaagcgttcctatttctccacagcctcgtcagcatctattgtttcctgactttttaataatcgccattctgactggcgtgagatggtatctcattgaggttttgatgtgcatttctctaatgatcaatgatgatgaa
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2109683 427 + 10377808 tttt-----tatggctgcataggattctatggtgtatatgtgccacattttctttatccagtctgtcatcgatgggcatttgagttggttccaagtctttgctaatgtaaatactgctgcagtaaacatatatgtgcatgtgcttttatagtagaatcatttacattcctttgagtatgtacccagtaatgggattgctgagtcaaatgg-tatttcttggttgtagatccttgtggaattgccacactgtcttacacagtggttgaactaatttacaatcccaccaacagtgtaaaaagcgttcctatttctccacagcctcttcagcatctattgtttcctgactttttaataatcgccattctgactggcgtgagatggtatctcattgaggttttgatgtgcatttctctaatgatcaatgatgatgaa
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2001070 426 -  8458610 tttt-----tatggctgcataggattctatggtgtatatgtgccacattttctttatccagtctgtcatcgatgggcatttgagttggttccaagtctttgctaatgtaaatactgctgcagtaaacatatatgtgcatgtgcttttatagtagaatcatttacattcctttgagtatgtacccagtaatgggattgctgagtcaaatgg-tatttc-tggttgtagatccttgtggaattgccacactgtcttacacagtggttgaactaatttacaatcccaccaacagtgtaaaaagcgttcctatttctccacagcctcatcagcatctattgtttcctgactttttaataatcgccattctgactggcgtgagatggtatctcattgaggttttgatgtgcatttctctaatgatcaatgatgatgaa
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64939719 426 + 75148670 tttt-----tatggctgcataggattctatggtgtatatctgccacattttctttatccagtctatcatcaatgggcatttgggttggttccaagtctttgctaatgtaaatactgctgcagtaaacatatatgtgcatgtgcttttatagtagaatcatttacattcctttgagtatatacccagtaatgggattgcagagtcaaatgg-tatttc-tggttgtagatccttgtggaattgccacactgtcttacacagtggttgaactaatttacaatcccaccaacagtgtaaaaagcgtttctatttctccacagcctcaccggcatctattgtttcctgactttttaataatcgccattctgactggcgtgagatggtatctcactgaggttttgatgtgcatttctctaatgatcaatgatgatgag
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2185720 426 +  4244037 tttt-----tatggctgcataggattctatggtgtatatgtgccacattttctttatccagtctgtcatcgatgggcatttgagttggttccaagtctttgctaatgtaaatactgctgcagtaaacatatatgtgcatgtgcttttatagtagaatcatttacattcctttgagtatgtacccagtaatgggattgctgagtcaaatgg-tatttc-tggttgtagatccttgtggaattgccacactgtcttacacagtggttgaactaatttacaatcccaccaacagtgtaaaaagcgttcctatttctccacagcctcgccagcatctattgtttcctgactttttaataatcaccattctgactggcgtgagatggtatctcattgaggttttgatgtgcatttctctaatgatcaatgatgatgaa
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2206999 426 +  4569836 tttt-----tatggctgcataggattctatggtgtatatgtgctacattttctttatccagtctgtcatcgatgggcatttgggttggttccaagtctttgctaatgtaaatactgctgcagtaaacatatatgtgcatgtgcttttatagtagaatcatttacattcctttgagtatatacccagtaatgggattgctgagtcaaatga-tatttc-tggttgtagatccttgaggaattgccacactgtcttacactgtggttgaactaatttacaatcccaccaacagtgtaaaaagcattcctatttctccacagcctcgtcagcatctattgtttcctgactttttaataattgccattctgactggcatgagatggtatctcattgaggttttgatttgcatttctctaatgaacaatgattatgag
i colAng1.NW_012122154v1    I 10 C 0
s saiBol1.JH378271           1878831 428 +  3513951 --ttgtgtgtgtggctgcataacgttccatggtgtatatgtgccacattttctttatccagtctatcattgatgagtacctgggatggttccaagtctttgctattgtaaatagtgctacaataaacatatatgtgcatatgtttttatagtagtatcatttatattcctttggggatctacctagtagtggcattgctgagtcaaatgg-tatttc-tggttttagatccttgaggaatttccacactgtcttccacagtggttgaacgaatttacaattccaccaacagcat-aaaagcatttctatttctccacagcctcaccagcatctgttgtttcctgactttttaataatcaccattctgactggcatgagatggtatctcattgtggttttagcttacatttctctaatgatcagtgatgatgag
i saiBol1.JH378271          C 0 T 12903
s cebCap1.NW_016107543v1       14385 423 -  4077172 --tt-----tgtggctgcataacattccatggtgtatatgtgccacattttctttatccagtctatcattgatgagcatttgggctggttccaagtctttgctattgcaaatagtgctgcaataaacatatatgtgcatgtgtttttataacagaatcgttcatattcctttgggtatctacctagtagtggcattgctgagtcaaatgg-tatttc-tggttttagatccttgaggaatttccacactgtcgtccacagtggttgaactaatttacaattccaccaacagcgt-aaaagcatttctatttctccatagcctcatcagcatctattgtttccttactttttaatgatcaccattctgactggcgtgagatggtatctcattgtggttttagcttacatttctctaatgatcagtgataatgag
i cebCap1.NW_016107543v1    C 0 I 5976
e aotNan1.NW_018505111v1        6797 7806 -    94492 I
e canFam3.chr9              39587482 2025 - 61074082 I
e dasNov3.JH570468            559538   0 -   852752 C
e otoGar3.GL873537          22862056 5332 + 28711273 I
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=923831.000000
s hg38.chr17_JH159148v1_alt    45539 201 +    88070 ctttttttcat--atgtttgttggccacataaaagtcttcttttgagaagtgtctgttcatatcctttgcccactttttgatgaggttgtttgtttttcttgtaaacttgtttaagttccttgtagattctggattttagacctttgtcagatgggtagattgcaaaaattctcacccattctgtaggttgtgtgttctctct
s panTro5.chr17             16356605 201 + 83181570 ctttttttcat--atgtttgttgcccacataaaagtcttcttttgagaagtgtctgttcatatcctttgcccactttttgatgaggttgtttgtttttcttgtaaacttgtttaagttccttgtagattctggattttagacctttgtcagatgggtagattgcaaaaattctctcccattctgtaggttgtgtgttctctct
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16261531 201 + 83442489 ctttgtttcat--atgtttgttggccacataaaagtcttcttttgagaagtgtctgttcatatcctttgcccactttttgatgaggatgtttgtttttcttgtaaacttgtttaagttccttgtagattctggattttagacctttgtcagatgggtagattgcaaaaattctctcccattctgtaggttgtgtgttctctct
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4108472 201 +  4267968 ctttttttcat--atgtttgttggccacataaaagtcttcttttgagaagtgtctgttcatatcctttgcccactttttgatgaggttgtttgtttttcttgtaaacttgtttaagttccttgtagattctggattttagacctttgtcagatgggtagattgcaaaaattctctcccattctgtaggttgtgtgttctctct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2096643 201 -  2193130 ctttttttcat--atgttcgttggccacataaaagtcttcttttgagaagtgtctgttcatatcctttgcccactttttgatggggttgtttgtttttcttgtaaacttgtttaagatccttgtagattccggatattagacctgtgtcagatgggtagattgcaaaaattctctcccattctgtaggttgtgtgttctctct
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28053593 201 - 80997621 ctttttttttc--atgtttgttggccacataaaaatcttctttcgagaagtgtctgttcatatcctttgcccactttttgatggggttgtttgtttttcttgtaaacttgtttaagttccttgtagattctggatattagacctttgtcagatgggtagattgcaaaagttctctcccattctgtaggctgtatgctcttttt
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2110110 201 + 10377808 ctttttttttc--atgtttgttggccacataaaaatcttctttcgagaagtgtctgttcatatcctttgcccactttttgatggggttgtttgtttttcttgtaaacttgtttaagttccttgtagattctggatattagacctttgtcagatgggtagattgcaaaagttctctcccattctgtaggctgtatgctcttttt
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2001496 194 -  8458610 ctttttttttc--atgtttgttggccacataaaaatcttcttttgagaagtatctgttcatatcctttgcccactttttgatggggttgtttatttttcttgtaaa-------aagttccttgtagattctggatattagacctttgtcagatgggtagattgcaaaagttctctcccattctgtaggctgtatgctcttttt
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64940145 199 + 75148670 gtttttttttcatatgtttgttggccacataaaaatcttcttttgagaagtgtctgttcatatcctttgtccactttttgatgggg----ttgtttttcttgtaaacttgtttaagttccttgtagattctggatattagacctttgtcagatgagtagattgcaaaagttctctcccattctgtgggctgtgtactcttttt
i chlSab2.chr16             C 0 I 318
s manLeu1.NW_012106252v1     2186146 201 +  4244037 ctttttttttc--atgtttgttggccacataaaaatcttcttttgagaagtgtctgttcatatcctttgcccactttttgatggggttgtttgtttttcttgtaaacttgtttaagttccttgtagattctggatattagacctttgtcagatgggtagattgcaaaagttctctcccattctgtaggctgtatgctcttttt
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2207425 198 +  4569836 -ttattttttc--ata--tgttggccacataaaaatcttcttttgagaagtgtctgttcatatcctttgcccactttttgatggggttgtttgtttttcttgtaaacttgtttacgttccttgtagattctggatattagacctttgtcagatgggtagattgcaaaagttctctcccattctgtaggctgtgtgcccttttt
i colAng1.NW_012122154v1    C 0 C 0
e aotNan1.NW_018505111v1        6797 7806 -    94492 I
e cebCap1.NW_016107543v1       14808 5976 -  4077172 I
e canFam3.chr9              39587482 2025 - 61074082 I
e dasNov3.JH570468            559538   0 -   852752 C
e otoGar3.GL873537          22862056 5332 + 28711273 I
e saiBol1.JH378271           1879259 12903 +  3513951 T
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=275478.000000
s hg38.chr17_JH159148v1_alt    45740 56 +    88070 gatgatagtttattttgctgtgcaggagctatttagtttaattagatcccatttgt
s panTro5.chr17             16356806 56 + 83181570 gatgatagtttattttgctgtgcaggagctatttagtttaattagatcccatttgt
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16261732 56 + 83442489 gatgatagtttattttgctgtgcaggagctatttagtttaattagatcccatttgt
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4108673 56 +  4267968 gatgatagtttattttgctgtgcaggagctatttagtttaattagatcccatttgt
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2096844 56 -  2193130 gatgacagtttattttgctgtgcagaagctatttagtttaattagatcttatttgt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28053794 56 - 80997621 gatgatagtttcttttgctgtgcagaagctatttagtttaattagatcccatttgt
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2110311 56 + 10377808 gatgatagtttcttttgctgtgcagaagctatttagtttaattagatcccatttgt
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2001690 56 -  8458610 gatgatagtttcttttgctgtgcagaagctatttagtttaattagatcccatttgt
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64940662 56 + 75148670 gatgatagtttcttttgctgtgcagaagctatttagtttaattagatcccatttgt
i chlSab2.chr16             I 318 C 0
s manLeu1.NW_012106252v1     2186347 56 +  4244037 gatgatagtttcttttgctgtgcagaagctatttagtttaattagatcccatttgt
i manLeu1.NW_012106252v1    C 0 I 184
s colAng1.NW_012122154v1     2207623 56 +  4569836 gatgatagtttcttttgctgtgcagaagctatttagtttaattagatcccatttgt
i colAng1.NW_012122154v1    C 0 C 0
e aotNan1.NW_018505111v1        6797 7806 -    94492 I
e cebCap1.NW_016107543v1       14808 5976 -  4077172 I
e canFam3.chr9              39587482 2025 - 61074082 I
e dasNov3.JH570468            559538  0 -   852752 C
e otoGar3.GL873537          22862056 5332 + 28711273 I
e saiBol1.JH378271           1879259 12903 +  3513951 T
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=6421245.000000
s hg38.chr17_JH159148v1_alt    45796 1375 +    88070 caattttggcttttgttgtgatagtttttggcatttttgtcatgaagtctttgcccatgtctatgtcctgaaagttattgcctaggttttcttctagggtttttatgattttgggtttcacatttaagtctttaatccatcttgagttaacttttgtataaggtgtaatgaaggggtccactttcagttttctgcatgtggctagccagttttcccagccccatttattaaatagggaatcttttccccattgcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtgttatttctgaggtctcagttctgttccattggtctatatatctgttttgataccagtaccatgctgttgtggttacagttgccttgtagtatagtttgaagtcaggtagcgtgatgcctccagctttgttcttttgtttgggattgttttggtgatacgggctcttttttggttccatatgaaatttaaagtag-----tttttttttaaattttgtgaagaaagtcaagggtagcttgatgggaatagcatttaatctataaattacttcgggcagcatggccgttttcatgatattgattctttctatccatgatcatgtaatgattttcaatttgtttgtgtcccctcttatttccttgagcagtggtttgtagtttcccttgaagaggtccttcacatcccttgtaagttgtattcctaggtattttattctctttgttgcaattgtgaatgggagttcactcatgatttggctctctgcttgtctattatcggtgtataagaatgcttgtgatttttgt-cattgattttgtatcttgagactttgttaaagttgcttatcagcttaaggagtttttaggatgagacactgaggttttctaaatatagaatcacgtcatctgcaaacaaagacaatttgacttcctctcttcctatctgaatgcc-tttatttctttcttttgcctgattgtcctggccagaacttccaatactatgttgaataggagtggtgagagagggcgttcttgtcttgtgccattttcaaagggaatgcttccagcttttgccc------attcagtataatattggctatgggtttgtcaaaaatagctcttattattttgagatatgttccatcaatacctagtttattgagagtttttaagatgaaggatgttgaattttatcgaaggccttttctgcatctattgagataatcatgtggtttttatcattggttctgtttatgtgatggattatgtttattgatttgcatatgttgaaccagccttgcatcccagggatgaag-caatttgatcatggtggataagctttttgatgtgctgctagatttgg
s panTro5.chr17             16356862 1377 + 83181570 caattttggcttttgttgtgatagtttttggcatttttgtcatgaagtctttgcccatgtctatgtcctgaaagttattgcctaggttttcttctagggtttttgtgattttgggtttcacatttaagtctttaatccatcttgagttaacttttgtataaggtgtaatgaaggggtccactttcagttttctgcatatggctagccagttttcccagccccgtttattaaatagggaatcttttccccattgcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtgttatttctgaggtctcagttctgttccattggtctatatatctgttttgataccactaccatgctgttgtggttacagttgccttgtagtatagtttgaagtcaggtagcgtgatgcctccagctttgttcttttgtttgggattgtcttggtgatacgggctcttttttggttccatatgaaatttaaagtag----tttttttttttaattttgtgaaggaagtcaagggtggcttgatgggaatagcatttaatctataaattacttcgggcagcatggccattttcatgatattgattctttctatccatgatcatgtaatgattttcaatttgtttgtgtcccctcttatttccttgagcagtggtttgtagtttcccttgaagaggtccttcacatcccttgtaagttgtattcctaggtattttattctctttgttgcaattgtgaatgggagttcactcatgatttggctctctgcttgtctattatcggtgtataagaatgcttgtgatttttgcacattgattttgtatcttgagactttgttaaagttgcttatcagcttaaggagtttttaggatgagatgctgaggttttctaaatatagaatcacgtcatctgcaaacaaagacaatttgactccctctcttcctatctgaatgcc-tttatttctttctcttgcatgattgtcctggccagaacttccaatactatgttgaataggagtggtgagagagggcgttcttgtcttgtgccattttcaaagggaatgcttccagcttttgccc------attcagtataatattggctatgggtttgtcaaaaatagctcttcttattttgagatatgttccatcaatacctagtttattgagagtttttaacatgaaggatgttgaattttatcgaaggccttttctgcatctattgagatgatcatgtggtttttatcattggttctgtttatgtgatggattatgtttattgatttgcatatgttgaaccagccttgcatcccagggatgaag-caatttgatcatggtggataagctttttgatgtgctgctagatttgg
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16261788 1375 + 83442489 caattttggcttttgttgtgatagtttttggcatttttgtcatgaagtctttgcccacgtctatgtcctgaaagttattgcctaggttttcatctagggtttttgtgattttgggtttcacatttaagtctttaatccatcttgagttaacttttgtataaggtgtaatgaaggggtccactttcagttttctgcatatggctagccagtttttccagccctgtttattaaatagggaatcttttccccattgcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtgttatttctgaggtctcagttctgttccattggtctatatatctgttttgataccactaccatgctgttgtggttacagttgccttgtagtatagtttgaagtcaggtagcgtgatgcctccagctttgttcttttgtttgggattgtcttggtgatacgggctcttttttggttccatatgaaatttaaagta------ttttttttttaattttgtgaaggaagtcaagggtagcttgatgggaatagcatttaatctataaattacttcgggcagcatggccattttcatgatattgattctttctatccatgatcatgtaatgattttcaatttgtttgtgtcccctcttatttccttgagcagtggtttgtagtttcccttgaagaggtccttcacatcccttgtaagttgtattcctaggtattttattctctttgttgcaattgtgaatgggagttcactcatgatttggctctctgcttgtctattatcggtgtataagaatgcttgtgatttttgcacattgattttgtatcttgagactttgttaaagttgcttatcagcttaaggagtttttaggatgagatgctgaggttttctaaatatagaatcacgtcatctgcaaacaaagacaatttgacttcctctcttcctatctgaatgcc-tttatttctttctcttgcatgattgtcctggccagaacttccaatactatgttgaataggagtggtgagagagggcgttcttgtcttgtgccattttcaaagggaatgcttccggcttttgccc------attcagtataatattggctatgggtttgtcaaaaatagctcttattattttgagatatgttccatcaatacctagtttattgagagtttttaacatgaaggatgttgaattttatcgaaggccttttctgcatctattgagatgatcatgtggtttttatcattggttctgtttatgtgatggattatgtttattgatttgcatatgttgaaccagccttgcatcccagggatgaag-caatttgatcatggtggataagctttttgatgtgctgctagatttgg
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4108729 1385 +  4267968 caattttggcttttgttgtgatagtttttggcatttttgtcatgaagtctttgcccatgtctatgtcctgaaagttattgcctaggttttcttctaggctttttatgattttgggtttcacatttaagtctttaatccatcttgagttaacttttgtataaggtgtaatgaaggagtccactttcagttttctgcatatggctaaccagttttcccagccccgtttattaaatagggaatcttttccccattgcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtgttatttctgaggtctcagttctgttccattggtctatatatctgttttgataccagtaccatgctgttgtggttacagttgctttgtagtatagtttgaagtcaggtggcatgatgcctccagctttgttcttttgtttaggattgtcttggtgatacgggcgcttttttggttccatatgaaatttaaagtagtttttttttttttttaattttgtgaagaaagtcaagggtagcttgatgggaatagcatttaatctataaattacttcgggcagtatggccattttcatgatattgattctttctatccatgatcatgtaatgattttcaatttgtttgtgtcccctcttatttccttgagcagtggtttgtagattcccttgaagaggtccttcacatcccttgtaagttgtattcctaggtattttattctc--tgttgcaattgtgaatgggagttcactcatgatttggctctctgcttgtctattatcggtgtataagaatgcttgtgatttttgcacattgattttgtatcttgagactttgttaaagttgcttatcagcttaaggaatttttaggatgagacgctgaggttttctaaatatagaatcacgtcatctgcaaacaaagacaatttgacttcctctcttcctatctgaatgcc-tttatttctttctcttgcctgattgtcctggccagaacttccaatactatgttgaataggagtggtgagagagggtgttcttgtcttgtgccattttcaaagggaatgcttccagcttttgcccattcagattcagtataatattggctatgggtttgtcaaaaatagctcttattattttgagatatgttccatcaatatctagcttattgagagtttttaacatgaaggatgttgaattttatcgaaggccttttctgcatctatcgagataatcatgtggtttttatcattggttctgtttatgtgatggattatgtttattgatttgcatatgttgaaccagccttgcatcccagggatgaag-caatttgatcatggtggataagctttttgatgtgctgctagatttgg
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2096900 1370 -  2193130 caatttgggcttttgttgtgatggtttttggcatttttatcatgaaatctttgcccatgtctatgtcctgaatgttattgcctaggttttcttctagggtttttatgattttgggtttcacatttaagtctttaatccatcttgagttaacttttgtataaggtgtaatgaaggggtccagtttcagttttctgcatatggctagccagttttcccaaccctgtttattaaatagggaatcttttccccattgcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtgttatttctgaggtctcagttttattccattggtctacatatctgttttgataccagtaccatgctattgtggttacagttgccttgtagtatagtttgaagtcaggtagcatgatgcctccagctttgttcttttgtttaggattgtcttggtgatatggg--cttttttggttccatatgaaatttaaagtag-----tttttttttaaattttgtgaagaaagtcaaggatagcttgatgggaatagcattgaatctataaattacttcaggcagtatggccattttcatgatatagattctttctatccatgatcatgt-----ttttcaatttgtttgtgtcccctcttatttccttgagca-tggtttgtagtttcccttgaagaagtccttcaagtcctttttaagttgtattcctaggtattttattctctttgttgcaattgtgaatgggagttcactcatgatttggctctctgcttgtctattattgatgtataggaatgcttgtgatttttgcacattgattttgtatcttgagactttgttaaagttgcttttcagcttaaggagtttttaggatgagaggctgaggttttctaaatatagaatcacatcatctgcaaacaaagacaattttacttcctcccttcttatctgaatgccttttatttctttctcttgcctgattgccctggccagaacttccaatactatgttgaataggagtggtgagacagggcattcttgtcttgtgccattttcaaagggaatgcttccagcttttgccc------attcagtataatattggctatgggtttgtcaaaaatagctcttattattttgagaaatgtcccatcaatatctagtttattgagagtttttaacaagaaggatgttgaattttatcgaaggccttttctgcatctactgagataatcacgtggtttttatcattagttctgtttatgtgatggattacgtttattgatttgcatatgttgaaccagccttgcatcccaggaatgaagccaatttgatcatggtggataagctttttgatgtgctgctagatttgg
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28053850 1376 - 80997621 caattttggcttttgttgccattgtttttggcatttttgtcatgaagtctttgtccatgcctgtgtcctgaatggtattgcctagtttttcttctagggtttttgtgatttggggttttacatttaagtctttaatccatcttgagttaa-ttttgtataaggtgtaaggaaggggtccagtttcagttttctgcatatggctagccagttttcccagccccatttgttaaatagggaatcctttccccatttcttgtttttgtcatatttgtcaaagatcagatggttgtagatgtgtggtgttatttctgaggtctcagttctgttccattggtctatataactattttgataccagtaccatgctgttgtggttacagttgccttgtagtatagtttgaagtcaggtagcatgatgcctcccgctttgttcttttgtttaggattgtcttggtgatatgggctcttttttggttccatatgaaatttaaagtag-----ttttaaaaaaaattttgcaaagacagtcaaggatagtttgatgggaatagcattgaatgtagaaattactttgggcagtatggccattttcatgatattgattcttcctatccatgagcatggaatgtttttccatttgtttgtgtcctcttttatttccttgagcagtggtttgtggtttcccttgaagaggtccttcatgtcccttgtaagttgtattcctaggtgttttattctctttgttgcaattgtgaatgggagttcactcatga-caagctctctgcttgtctattgttggtgtataggaatacttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagtttttaggctgagatgctgatgttttctaaatatagaatcatgtcatctgcaaacaaagacaatttgacttcctctcttcctatctgaatgctctttatttctttctcttgcctgattaccctggccagaacttccaatactatgttgaataggagtggtgagagagggcatccttgtcttgtcccattttcagagggaatgcttaaagcttttgccc------attcagtataatattggctatgggtttgttataaatagttcttattattttgagatatgttccatcaatacctggtttattgagagtttttaacatgaaggatgttgaattttaatgaaggccttttctgtatctattgagataatcatgtggtttttatcattggttgtgtttatgtgatagattatgtttgttgatttgcatatgttgaaccagccttacatcccagggatgaagccaatttgatcatggcggataagctttttgatgtactgctagatatgg
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2110367 1376 + 10377808 caattttggcttttgttgccattgtttttggcatttttgtcatgaagtctttgtccatgcctgtgtcctgaatggtattgcctagtttttcttctagggtttttgtgattttgggttttacatttaagtctttaatccatcttgagttaa-ttttgtataaggtgtaaggaaggggtccagtttcagttttctgcatatggctagccagttttcccagccccatttgttaaatagggaatcctttccccatttcttgtttttgtcagatttgtcaaagatcagatggttgttgatgcgtggtgttatttctgaggtctcagttctgttccattggtctatatatctattttgataccagtaccatgctgttgtggttacagttgccttgtagtatagtttgaagtcaggtagcatgatgcctcccgctttgttcttttgtttaggattgtcttggtgatatgggctcttttttggttccatatgaaatttaaagtag-----ttttaaaaaaaattttgcaaagacagtcaaggatagtttgatgggaatagcactgaatctataaattactttgggcagtatggccattttcatgatattgattctttctatccatgagcatgtgaggtttttcaatttgtttgtgtcccctcttatttccttgagcagtggtttgtggtttcccttgaagaggtccttcatgtcccttgtaagttttattcctaggtgttttattctctttgttgcaattgtgaatgggagttcactcatga-caagctctctgcttgtctattgttggtgtataggaatacttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagtttttaggctgagatgctgatgttttctaaatatagaatcatgtcatctgcaaacaaagacaatttgacttcctctcttcctatttgaatgctctttgtttttttctcttgcctgattgccctggccagaacttccaatactatgttgaataggagtggtgagagagggcatccttgtcttgtgccattttcagagggaatgcttaaagcttttgccc------attcagtataatattggctatgggtttgttataaatagttcttattattttgagatatgttccatcaatacctggtttattgagagtttttaacatgaaggatgttgaattttaatgaaggccttttctgtatctattgagataatcatgtggtttttatcattggttgtgtttatgtgatagattatgtttgttgatttgcatatgttgaaccagccttacatcccagggatgaagccaatttgatcatggcggataagctttttgatgtactgctagatatgg
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2001746 1376 -  8458610 caattttggcttttgttgccattgtttttggcattattgtcatgaagtctttgtccatgcctgtgtcctgaatggtattgcctagtttttcttctagggtttttgtgattttgggttttacatttaagtctttaatccatcttgagttaa-ttttgtataaggtgtaaggaaggggtccagtttcagttttctgcatatggctagccagttttcccagccccatttgttaaatagggaatcctttccccatttcttgtttttgtcagatttgtcaaagatcagatggttgtagatgtgtggtgttatttctgaggtctcagttctgttccattggtctatatatctattttgataccagtaccatgctgttgtggttacagttgccttgtagtatagtttgaagtcaggtagcatgatgcctcccgctttgttcttttgtttaggattgtcttggtgatatgggctgttttttggttccatacgaaatttaaagtag-----ttttaaaaaaaattttgcaaagacagtccaggatagtttgatgggaatagcactgaatctataaattactttgggcagtatggccattttcatgatattgattctttctatccatgagcatgtgatgtttttcaatttgtttgtgtcccctcttatttctttgagcagtggtttgtggtttcctttgaagaggtccttcatgtcccttgtaagttgtattcctaggtgttttattctctttgttgcaattgtgaatgggagttcactcatga-caagctctctgcttgtctattgttggtgtataggaatacttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagtttttaggctgagatgctgatgttttctaaatatagaatcatgtcatctgcaaacaaagacaatttgacttcctctcttcctatctgaatgccctttatttctttctcttgcctgattaccctggccagaacttccaatactatgttgaataggagtggtgagagagggcatccttgtcttgtgccattttcaaagggaatgcttaaagcttttgccc------attcagtataatattggctatgggtttgttataaatagttcttattattttgagatatgttccatcaatacctggtttattgagagtttttaacatgaaggatgttgaattttaatgaaggccttttctgtatctattgagataatcatgtggtttttatcattggttgtgtttatgtgatagattatgtttgttgatttgcatatgttgaaccagccttacatcccagggatgaagccaatttgagcatggcggataagctttttgatgtactgctagatatgg
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64940718 1376 + 75148670 caattttggcttttgttgcgattgtttttggcatttttgtcatgaagtctttgtccatgcctgtgtcctaaatggtattgcctagtttttcttctagggtttttgtgattttgggttttgcatttaagtctttaatccatcttgagttaa-ttttgtataaggtgtaaggaaggggtccagtttcagttttctgcatatggctagtcagttttcccagccccatttgttaaatagggaatcctttccccatttcttgtttttgtcagatttgtcaaagatcagatggttgtagatgtgtggtgttatttctgaggtctcagttttgttccattggtctatatatctattttgataccagtaccatgctgttgtggttacagttgccttgtagtatagtttgaagtcaggtagcatgatgcctcccgctttgttcttttgtttaggattgtcttggtgatatgggctcttttttggttccatatgaaatttaaagtag-----ttttaaaaaaaattttgtaaagacagtcaaggatagtttgatggaaatagcactgaatctataaattactttgggcagtatggccattttcatgatattgattctttctatccatgagcgtgtgatgtttttcaatttgtttgtgtcccctcttatttccttgagcagtggtttgtggtttcccttgaagaggtccttcatgtcccttgtaagttgttttcctaggtgctttattctctttgttacaattgtgaatgggagttcactcatga-caagctctctgcttgtctattgttggtgtataggaatacttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagtttttaggctgagatgctgatgttttctaaatatagaatcatgtcatctgcaaacaaagacaatttgacttcctctcttcctatctgaatgccctttatttctttctcttgcctaattaccctggccagaacttccaatactatgttgaataggagtggtgagagagggcatccttgtcttgtgccattttcaaagggaatgcttctagcttttgccc------attcagtataatattggctatgggtttgttataaatagttcttattattttgagatatgttccatcaatacctggtttattgagagtttttaacatgaaggatgttgaattttaatgaaggccgtttctgtatctattgagataatcatgtggtttttatcattggttgtgtttatgtaatggattatgtttgttgatttgcatatgttgaaccagccttacatcccagggatgaagccaatttgatcatggtggataagctttttgatgtactgctagatatgg
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2186587 1375 +  4244037 caattttggcttttgttgccattgtttttggcatttttgtcatgaagtctttgtccatgcctgtgtcctgaatgatattgcctagtttttcttctagggtttttgtgattttgggttttacatttaagtctttagtccatcttgagttaa-ttttgtataaggtgtgaggaaggggtccagttccagttttctgcatatggctagccagttttcccagccccatttgttaaatagggaatcctttccccatttcttgtttttgtcagatttgtcaaagatcagatggttgtagatgtgtggtgttatttctgaggtctcagttctgttccattggtctatatatctattttgataccagtaccatgctgttgtggttacagttgccttgtagtatagtttgaagtcaggtagcatgatgcctcccgctttgttcttttgtttaggattgtcttggtgatatgggctcttttttggttccatatgaaatttaaagtag-----ttttaaaaaaatttttgcaaagacagtcaaggatagtttgatgggaatagcactgaatctataaattactttgggcagtatggccattttcatgatattgattctttctatccatgagcatgtgatgtttttcaatttgtttgtgtcccctcttatttccttgagcagtggtttgtggtttcccttgaagaggtccttcatgtcccttgtaaattgtattcctaggtattttattctctttgttgcaattgtgaatgggag-tcactcatga-caagctctctgcttgtctattgttggtgtataggaatacttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggaatttttaggctgagatgctgatgttttctaaatatagaatcatgtcatctgcaaacaaagacaatttgacttcctctcttcctatctgaatgccctttatttctttctcttgcctgattaccctggccagaacttccaatactatgttgaataggagtggtgagagagggcatccttgtcttgtgccattttcaaagggaatgtttaaagcttttgccc------attcagtataatattggctatgggtttgttataaatagttcttattattttgagatatgttccatcaatacctggtttattgagagtttttagcatgaaggatgttgaattttaatgaaggccttttctgtatctattgagataatcatgtggtttttatcattggttgtgtttatgtgatggattatgtttgttgatttgcatatgttgaaccagccttacatcccagggatgaagccaatttgatcatggcggataagctttttgatgtactgctagatatgg
i manLeu1.NW_012106252v1    I 184 C 0
s colAng1.NW_012122154v1     2207679 1357 +  4569836 caattttggcttttgttgcgattgtttttggcgtttttgtcatgaagtctttgtccatgcctatgtcctgaacggtgttgcctagtttttcttctagggtttttgtgattttgggttttacatttaagtctttaatccatcttgagttag-tttcgtataaggtgtaaggaaggggtccagtttcagttttctgcatatggctagccagttttcccagccccatttgttaaatagggaatcctttccctatttcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtgttatttctgaggtctcagttctgttccattggtctatatatctcttttgataccagtaccatgctgttgtggttacagttgccttgtagtatagtttgaagtcaggtagcatgatgcctcccactttgttcttttgtttaggattgtcttggtgatatgggctcttttttggttccatatgaaatttaaagtag-----ttttaaaaaaaagtttgcaaagaaagtcgaggatagcttgatgggaatagcactgaatctataaattactttgggcagtatggacattttcatgatattgattctttctatccatgagcatgtgatgtttttcaatttgtttgtgtcccctcttatttccttgagcagtggtttgtggtttcccttgaagaggtccttcatgtcccttgtaagttgtattcctaggtgttttattctctttgttgcaattgtgaatgggagttcactcatgatttggctctctgcttgtctattgttggtgtataggaatacttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagtttttaagctgagatgctgatgttttctaaatatagaatcacgtcatctgtaaacaaagacaatttggcctcctctcttcctatctaaatgccctttatttctttctcttgtctgattaccctg--------------------gttgaataggagtggtgagagagagcatccttgtcttgtgccattttcaaagggaatgcttctagcttttgccc------gttcagtataatattagctatgtgtttgtcataaatagttcttactattttgagatatgttccatcaatacctggtttattgagagtttttaacatgaaagatgctgaattttaacgaaggccttttctgtatctattgagataatcatgtggtttttatcattggttgtgtttatgtgatgggttatgtttattgatttgcatatgttggaccagccttacatcccagggatgaagccaatttgatcatggtggataagctttttgatgtactgctagatttgg
i colAng1.NW_012122154v1    C 0 C 0
e aotNan1.NW_018505111v1        6797 7806 -    94492 I
e cebCap1.NW_016107543v1       14808 5976 -  4077172 I
e canFam3.chr9              39587482 2025 - 61074082 I
e dasNov3.JH570468            559538    0 -   852752 C
e otoGar3.GL873537          22862056 5332 + 28711273 I
e saiBol1.JH378271           1879259 12903 +  3513951 T
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=1094214.000000
s hg38.chr17_JH159148v1_alt    47171 248 +    88070 tttttactaactttactgaggtataat---------tgaataaaaattgtatatatttaaggtataaaaagtgatgttttga------tatatat--atttat----------------agtgagatattcatcacagtgaagctaattcacatattcattagctcacatacttgc----------------------------------------------------catttCAGgtataaaataaaatattttta---cctacagccacactactgtacactaggtctgcagagcttatttaccttgcatacctgaTCTTGGCCAAAGTGAATG
s panTro5.chr17             16358239 247 + 83181570 tttttactaactttactgaggtataat---------tgaataaaaattgtatatatttaaggtataaaaagtgatgttttga------tatatat---ttttt----------------agtgagatattcaccacagtgaagctaattcacatattcattagctcacatacttgc----------------------------------------------------catttcaggtataaaataaagtattttta---gctacagccacactactgtacactaggtctgcagaacttatttacctcgcataactgaTCTTGGCCAAAGTGAATG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16263163 250 + 83442489 tttttactaactttactgaggtataat---------tgaataaaaattgtatatatttaaggtataaaaagtgatgttttga------tatatatatattttt----------------agtgagatattcaccacagtgaagctaattcacatattcattagctcacatacttgc----------------------------------------------------catttcaggtataaaataaagtattttta---gctacagccacactactgtacactaggtctgcagaacttatttacctcgcataactgaTCTTGGCCAAAGTGAATG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4110114 250 +  4267968 tttttactaactttactgaggtataat---------tgaataaaaattgtatatatttaaggtataaaaagtgatgttttga------tatatatatatttat----------------agcgagatattcaccacagtgaagctaattcacatattcattagctcacatacttgc----------------------------------------------------catttcaggtataaaataaagtattttta---gctacagccacactactgtacactaggtctgcagaacttatttaccttgcataactgaTCTTGGCCAAAGTGAATA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2098270 248 -  2193130 tttttactgactttactgaggtataat---------tgaataaaaattgtgtatatttaaggtatacaaagtgatgttttga------catatat--atttat----------------agtgaggtattcaccacagtgaagctaattaacatattcattcgctcacatacttgc----------------------------------------------------catttcaggtataaaataaagtattttta---gctatggccacactaccgtacactaggtctgcagaacttattcaccttgcataaccgaTGTTGGCCAAAGTAAATG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28055226 275 - 80997621 tttttataaactttattgaggtataattg------atgaataaaaattgtatgtatttaaggtatacaaagtgatgtgtgtgtatatatatatatatacatatatatatagtgagatatagtgagattttcaccacagtgtggctaattcacatattcattagctcacatacttgc----------------------------------------------------catttcaggtataaaataaagtattttta---gctataaccacactactgtacagtaggtctacagaacttattcatcttgcataactgaTGTTGGCCAAAGTGAATG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2111743 269 + 10377808 tttttataaactttattgaggtataattg------atgaataaaaattgtatgtatttaaggtatacaaagtgatgtgtgtg------tatatatatacatatatatatagtgagatatagtgagattttcaccacagtgtggctaattcacatattcattagctcacatacttgc----------------------------------------------------catttcaggtataaaataaagtattttta---gctataaccacactactgtacagtaggtctacagaatttattcatcttgcataactgaTGTTGGCCAAAGTGAATG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2003122 269 -  8458610 tttttataaactttattgaggtataattg------atgaataaaaattgtatgtatttaaggtatacaaagtgatgtgtgtg------tatatatatacatatatatatagtgagatatagtgagattttcaccacagtgtggctaattcacatattcattagctcacatacttgc----------------------------------------------------catttcaggtataaaataaagtattttta---gctataaccacactactgtacagtaggtctgcagaacttattcatcttgcataactgaTGTTGGCCAAAGTGAATG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64942094 269 + 75148670 tttttataaactttattgaggtataattg------atgaataaaaattgtatgtatttaaggtatacaaagtgatgtgtgtg------tatatatatacatatatatatagtgagatatagtgagattttcaccacagtgtggctaattcacatattcattagctcacatacttgc----------------------------------------------------catttcaggtataaaataaagtattttta---gctataaccacactactgtacagtaggtctgcagaacttattcatcttgcataactgaTGTTGGCCAAAGTGAATG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2187962 269 +  4244037 tttttataaactttattgaggtataattg------atgaataaaaattgtatgtatttaaggtatacaaagtgatgtgtgtg------tatatatatacatatatatatagtgagatgtagtgagattttcaccacagtgtggctaattcacatattcattagctcacatacttgc----------------------------------------------------catttcaggtataaaataaagtattttta---gctataaccacactactgtacagtaggtctgcagaacttattcatctttcataactgaTGTTGGCCAAAGTGAATG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2209036 195 +  4569836 tttTTATAaactttattgaggtataattg------atgaataaaaattgtatgtatttaaggtatacaaagtgatgttcgta------tatgtatgtatatat------------------------------------------------------------------------------------------------------------------------------atttcaggtataaaataaagtattttta---gctatagccacactactgtacagtaggtctgcagaacttattcatcttgcataactgaTGTTGGCCAAAGTGAATG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1866356 294 +  3513951 Tttttactagctttattgaggcactactgacaaataaaaataaaaattgtgtatatttaatgtgtatgaggtgttgtttcag------gatatatatatttat----------------tgtaaaat------cata-------------atatattccttagctcacgtagttacaatttccttttcacttttatggtgtgaacagctcaggtctaccttcttagaaaatttcaggtatacaataaaacattgttgttcactaaagtcacgttgttgtacactagatctgcagaagttactcatcttgcgatactgaTGTTGGTCAAAA-GAATG
i saiBol1.JH378271          T 12903 C 0
e aotNan1.NW_018505111v1        6797 7806 -    94492 I
e cebCap1.NW_016107543v1       14808 5976 -  4077172 I
e canFam3.chr9              39587482 2025 - 61074082 I
e dasNov3.JH570468            559538   0 -   852752 C
e otoGar3.GL873537          22862056 5332 + 28711273 I
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=306261.000000
s hg38.chr17_JH159148v1_alt    47419 56 +    88070 TTTTAGGTCTTCATCTCCTTTACCCTGTCACCCCAGAAGAATCA--CAGTCAATGGAT
s panTro5.chr17             16358486 56 + 83181570 TTTTAGGTCTTCATCTCCTTTACCCTGTCACCCCAGAAGAATCA--CAGTCAATGGAT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16263413 56 + 83442489 TTTTAGGTCTTCATCTCCTTTACCCTGTCACCCCAGAAGAATCA--CAGTCAATGGAT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4110364 56 +  4267968 TTTTAGGTCTTCATCTCCTTTACCCTGTCACCCCAGAAGAATCA--CAGTCAATGGAT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2098518 56 -  2193130 TTTTAGGTCTTCGTCTCCTTTACCCTGTCACCCAAGAAGAATCA--CAGTCAATGGAT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28055501 56 - 80997621 TTTTAGGTCTTCATCTTCTTTACCCTGTCACCCAAGAAGAATCA--CAGTCAATGGAT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2112012 56 + 10377808 TTTTAGGTCTTCATCTTCTTTACCCTGTCACCCAAGAAGAATCA--CAGTCAATGGAT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2003391 56 -  8458610 TTTTAGGTCTTCATCTTCTTTACCCTGTCACCCAAGAAGAATCA--CAGTCAATGGAT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64942363 56 + 75148670 TTTTAGGTCTTCATCTTCTTTACCCTGTCACCCACGAAGAATCA--CAGTCAATGGAT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2188231 56 +  4244037 TTTTAGGTCTTCATCTTCTTTACCCTGTTACCCAAGAAGAATCA--CAGTCAATGGAT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2209231 56 +  4569836 TTTTAGGTCTTCATCTCCTTCACCCTGTCACCCAAGAAGAATCA--CAGTCAATGGAT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1866650 56 +  3513951 TGACAGTTCTTCACCTTCTTTACCCCATCACACAATGACTATCA--CGGTCATTGACC
i saiBol1.JH378271          C 0 C 0
s dasNov3.JH570468            559538 55 -   852752 TTTTCATTCTTCACCTGCTTCACCCCATCCCTCATT--GAATCAGCAGGTAGAAAGA-
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1        6797 7806 -    94492 I
e cebCap1.NW_016107543v1       14808 5976 -  4077172 I
e canFam3.chr9              39587482 2025 - 61074082 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=159043.000000
s hg38.chr17_JH159148v1_alt    47475 19 +    88070 TTTGTCTCTTAGCCAAGTC
s panTro5.chr17             16358542 19 + 83181570 TTTGTCTCTTAGCCAAGTC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16263469 19 + 83442489 TTTGTCTCTTAGCCAAGTC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4110420 19 +  4267968 TTTGTCTCTTAGCCAAGTC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2098574 19 -  2193130 TTTGTCTCTTAGCCAAGTC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28055557 19 - 80997621 TTTGTCTCTTAGCCAAGTC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2112068 19 + 10377808 TTTGTCTCTTAGCCAAGTC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2003447 19 -  8458610 TTTGTCTCTTAGCCAAATC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64942419 19 + 75148670 TTTGTCTCTTAGCCAAGTC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2188287 19 +  4244037 TTTGTCTCTTAGCCAAGTC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2209287 19 +  4569836 TTTGTCTCTTAGCCAAGTC
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1866706 19 +  3513951 TTTGTCTGTTAGCTGAGTC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       20784 19 -  4077172 TTTGTCTGTTAGCCAAGTC
i cebCap1.NW_016107543v1    I 5976 C 0
s aotNan1.NW_018505111v1       14603 19 -    94492 TTTGTCTCTTAGCCAAGTC
i aotNan1.NW_018505111v1    I 7806 C 0
s dasNov3.JH570468            559593 19 -   852752 TCAGATTTTTGGCTGACTC
i dasNov3.JH570468          C 0 C 0
e canFam3.chr9              39587482 2025 - 61074082 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=2381095.000000
s hg38.chr17_JH159148v1_alt    47494 327 +    88070 TCCAAAGCACTCTAGGTACACAGTCTCAGAAGTTGGGATCCGTCCTGGAAGTCTACATCGTTAGCTCATCAGAGGTATTTCTAGCACTCCCATGCTGGTAGGAGGTCCCACAAAGGTAATCCAGGTCCCAGACTTTTCTATTTCTCTCAGAGCCAGTATAAATCAGTCCTTCCATTAGTGAATGCTTGGGTTGCATCATCAGTTCAGGGCCAAAAGCACCAGCCATCTGCCTATCATGACTTCTATGAATGTACACA------TTTTTCTACTTTCAGTCCGTCTTACATTCTTCTGATTTCCCTGAAAACACAAATGTTTATTTCCTTTAGA
s panTro5.chr17             16358561 327 + 83181570 TCCAAAGCATTCTAGGTACACAGTCTCAGAAGTTGGGATCCGTCCTGGAAGTCTACATCGTTAGCTCATCAGAGGTATTTCTAGCACTCCCATGCTGGTAGGAGGTCCCACAAAGGTAATCCAGGTCCCAGACTTTTCTATTTCTCTCAGAACCAGTATAAATCAGTCCTTCCATTAGTGAATGCTTGGGTTGCATCATCAGTTCAGGGCCAAAAGCACCAGCCGTCTGTCTATCATGACTTCTAAGAATGTACACA------TTTTTCTACTTTCAGTCCTTCTTACATTCTTCTGATTTCCCTGAAAACACAAATCTTTATTTCCTTTAGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16263488 327 + 83442489 TCCAAAGCATTCTAGGTACACAGTCTCAGAAGTTGGGATCCGTCCTGGAAGTCTACATCGTTAGCTCATCAGAGGTATTTCTAGCACTCCCATGCTGGTAGGAGGTCCCACAAAGGTAATCCAGATCCCAGACTTTTCTATTTCTCTCAGAACCAGTATAAATCAGTCCTTCCATTAGTGAATGCTTGGGTTGCATCATCAGTTCAGGGCCAAAAGCACCAGCCGTCTGTCTATCATGACTTCTAAGAATGTACACA------TTTTTCTACTTTCAGTCCTTCTTACATTCTTCTGATTTCCCTGAAAACACAAATCGTTATTTCCTTTAGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4110439 325 +  4267968 TCCAAAGCATTCTAGGTACACAGTCTCAGAAGCTGGGATCCGTCCTGGAAGTCTACATCGTTAGCTCATCAGAGGTATTTCTAGCACTCCCATGCTGGTAGGAGGTCCCACAAAGGTAA--CAGGTCCCAGACTTTTCTATTTCTCTCAGAGCCAGTATAAATCAGCCCTTCCATTAGTGAATGCTTGGGTTGCATCATCAGTTCAGGGCCAAAAGAACCAGCCATCTGTCTATCATGACTTCTATGAATGTACACA------TTTTTCTACTTTCAGTCCTTCTTATATTCTTCTGATTTCCCTGAAAACACAAATCTTTATTTCCTTTAGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2098593 327 -  2193130 TTCAAAGCATTTGAGGTACACAGTCTCAGAAGTTGGCACCTGTCCTGGAAGTCTACATTGTTAGCTCATCAGAGGTATTTCTAGCACTCCCATGCTGGTAGGAGGTCCCACAAAGGTAACCCAGGTCCCCGACTTTTCTATTTCTCTCAGAGCCAGTATAAATCAGTCCTTCCATTAGTGAATGCTTGGGTTGCATCACCAGTTCAGGGCCAAAAGCACCAGCCATCTGTCTACCATGACTTCTATGAATGTACACA------TTTTTCTACTTTCAGTCCTTCTTACATTCTTCTGATTTCTCTGAAAACACAAACCTTTATTTCCTTTAGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28055576 326 - 80997621 TTCAAAGCATTCTAGGTACACAGTCTCAGAAGTTGGCATCTGTCCTGGAAGTCTACATTGTTAGGTCATCAGAGGTATTTCTAGCACTTCCATGCTGGTAGGAGGTCCCACAAAGGTAACCCAGGCCCCAGACTTTTCTATTTCTCTCAGAGCCAGTATAAATCAGTCCTTCCATTAGTGAATACTT-GGTTGCATCATCAGTTTGGGGCCAACAGCACCAGCCATCTGTCTACCATGACTTCGATGAATGCACACA------TTTTTCTACTTTTAGTCCTTCTTACATTCTTCTGATTTCCCTGAAAACGCAAATCTTTATCTCCTTTAGA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2112087 326 + 10377808 TTCAAAGCATTCTAGGTACACAGTCTCAGAAGTTGGCATCTGTCCTGGAAGTCTACATTGTTAGGTCATCAGAGGTATTTCTAGCACTTCCATGCTGGTAGGAGGTCCCACAAAGGTAACCCAGGCCCCAGACTTTTCTATTTCTCTCAGAGCCAGTATAAATCAGTCCTTCCATTAGTGAATACTT-GGTTGCATCATCAGTTTGGGGCCAACAGCACCAGCCATCTGTCTACCATGACTTCGATGAATGCACACA------TTTTTCTACTTTTAGTCCTTCTTACATTCTTCTGATTTCCCTGAAAACGCAAATCTTTATTTCCTTTAGA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2003466 326 -  8458610 TTCAAAGCATTCTAGGTACACAGTCTCAGAAGTTGGCATCTGTCCTGGAAGTCTACATTGTTAGGTCATCAGAGGTATTTCTAGCACTTCCGTGCTGGTAGGAGGTCCCACAAAGGTAACCCAGGCCCCAGACTTTTCTGTTTCTCTCAGAGCCAGTATAAATCAGTCCTTCTATTAGTGAATACTT-GGTTGCATCATCAGTTTGGGGCCAACAGCACCAGCCATCTGTCTACCATGACTTCGATGAATGCACACA------TTTTTCTACTTTTAGTCCTTCTTACATTCTTCTTATTTCCCTGAAAACACAAATCTTTATTTCCTTTAGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64942438 327 + 75148670 TTCAAAGCATTCTAGGTACACAGTCTCAGAAGTTGGCATGTGTCCTGGAAGTCTACATTGTTAGGTCATCAGAGGTATTTCTAGCACTTCCATGCTGGTAGGAGGTCCCACAAAGGTAACCCAGGCCCCAGACTTTTCTATTTCTCTCAGAGCCAGTATAAATCGGTCCTTCCATTAGTGAATACTTGGGTTGCATCATCAGTTTGGGGCCAACAGCACCAGCCATCTGTCTACCATGACTTCGATGAATGAACACA------TTTTTCTACTTTTAGTCCTTCTTACATTCTTCTGATTTCCCTGAAAACACAAATCTTTATTTCCTTGAGA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2188306 327 +  4244037 TTCAAAGCATTCTAGGTACACAGTCTCAGAAGTTGGCATCTGTCCTGGAAGTCTACATTGTTAGGTCATCAGAGGTATTTCTAGCACTTCCATGCTGGTAGGAGGTCCCACAAAGGTAACCCAGGCCCCAGACTTTTCTATTTCTCTCAGAGCCAGTATAAATCAGTCCTTCCATTAGTGAATACTTGGGTTGCATCATCAGTTTGGGGCCAACAGCACCAGCCATCTGTCTACCATGACTTCGATGAATGCACACA------TTTTTCTACTTTTAGTCCTTCTTACATTCTTCTGATTTCCCTGAAAACACAAATCTTTATTTCCTTTAGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2209306 327 +  4569836 TTCAAAGCATTCTAGGTACACAGTCTCAGAAGTTGGCATCTGTCCTGGAAGTCTACATTGTTAGGTCATCAGAGGTATTTCTAGCACTTCCATGCTGGTAGGAGGTCCCACAAAGGCAACCCAGGCCCCAGACTTTTCTATTTCTCTCAGAGCCAGTATAAATCAGTCCTTCCATTAGTGAATACTTGGGTTGCATCATCAGTTCAGGGCCAACAGCACCAGCCATCTGTCTACCATGACTTCGATGAATGCACACA------TTTTTCTACTTTTAGTCCTTCTTACATTCTTCTGATTTCCCTGAAAACACAAATCTTTATTTCCTTTAGA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1866725 315 +  3513951 TTCAGAGCATTCTAGATACACCACCTCAGAAGTTGGCATCTGTCTTGGAAACCTACACTGTTAGCTCATCAGAGGTATTTTTACCCTTCTCATGCTGGTAGGTGGTCCTACGATGGTGGCCCAGGCCCCTAACTTTTCTAATTCTCTTAGGGCCAATATCACTCAATCATTGCAGGACTGAATAATTCCATTGTATCATCAGTTCAGGAACAAAAGTACCAGTCTTCCATCTATCGTGTCTTCCACGGATGAAAAAGAAAAAGTTCTGCCACTTTTCCTATTTCTTAAATTCTACTGATTTCCCTGGAAA------------------TCAGA
i saiBol1.JH378271          C 0 I 18627
s cebCap1.NW_016107543v1       20803 320 -  4077172 TTCAGAGCATTCTAGATTCGCAGTATCAGAAGCTGGCATCTGTCATGGAAATCTACATTGGTAGCTCATCAGATATATTTCTACCACTCCCATGCTGGTAGGAGGTCCCAAGAAGGTGACCCAGATCCCCGACTTTTCTATTTCTCTCAGAGCCATGATTAATCAATCCTTCCATAAGTGAATGCTTAGCTTG---CATCAGCTCAGGACCAAAAGCACCAATC-TCTGTCTATCATGGTTTCTAAGAATGCACAAG---------TTCTACTTTTCTCCTTTCTTACATTCTTCTGATTTCCCTGAAAACACAAGATTTTAGTTTCTTTGGA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       14622 312 -    94492 TTCAGAGCATTCTAGATTCACAGTCTCAGAAGCTGGCATCTGTCATGGAAATCTACACTGGTAGCTCATCAGAGGTATTTCTACCACTCCCATGCTGGTAGGAGGTCCCAAGAAGGCGACCCAGGTCCCCGACTTTTCTATTTCACTCAGGGCCATGATTAATCAGTCCTTCCATAAGTGAATGCTTAGCTCG---CATCAGCTCAGGACCGAAAGCACCAACC-TCTGTCTATCATGGTTTCTATGAATGCACAAG---------TTCTGCTTTTCTCTTTTCTTACATTCTTCTGATTTCCCTGGAAACAC--------AGTTTCTTTAGA
i aotNan1.NW_018505111v1    C 0 C 0
s canFam3.chr9              21519874 302 + 61074082 TCCAGAGCCTCCTGGAGAGCAAGTCTCCAATGTTGGAGTGTGCCTGGGGCAGGAGCCTTCCTAGCTCTACAAAGGTCCCTCTAGGGCTCCCAGG-------------------AGGTGACCCAGGGCCTAGG-TCTCCTCTTCCTCTCAAAGCC----TGAATCAAACCTCAGATACCTTAGTATCAAGGCAGCACCATTAGTTCAGGAGCAGAAGTGCCAGCCCTTTGTCTATCATGACTCCTATGAATGCCCACA------TTCTTTTCTCTTTCTTCTTCCTCATATTTGTCCCATCCCCCT-AGAACAGGCAGCTTTCTTTCCCTCCAA
i canFam3.chr9              I 38610 C 0
s dasNov3.JH570468            559612 268 -   852752 CTCAAAGCCTTCCAGACATACACTTTTGGATATGGTGTTTTTCCCTCATTACATATACTGTTAACTCATCAGAGGTAT-------ACTTCTA------------------------------AAGTCTCT-ACCCTTCTTTTATGCCCA-AGCCAGTA----CCAGGCTTTAATCTAATGAATACTTATGTAGCATCTTTTCTTCACCACTAAAA-TATCAGCCTTCTGTCTGTCATAACTCTGATGAGTGCACATT------TTTTAATACT--------------CAAATATATGTTTCCCATGCAGACG-GGCTTTTTATTTCCCTTGGA
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22862056 5332 + 28711273 I
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=44322.000000
s hg38.chr17_JH159148v1_alt    47821 5 +    88070 TGCTT
s panTro5.chr17             16358888 5 + 83181570 TGCTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16263815 5 + 83442489 TGCTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4110764 5 +  4267968 TGTTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2098920 5 -  2193130 TGCTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28055902 5 - 80997621 TGTTT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2112413 5 + 10377808 TGTTT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2003792 5 -  8458610 TGTTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64942765 5 + 75148670 TGTTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2188633 5 +  4244037 TGTTT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2209633 5 +  4569836 TGATT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1885667 5 +  3513951 TGCTT
i saiBol1.JH378271          I 18627 C 0
s cebCap1.NW_016107543v1       21123 5 -  4077172 TGCTT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       14934 5 -    94492 TGCTT
i aotNan1.NW_018505111v1    C 0 C 0
s canFam3.chr9              21520176 5 + 61074082 TGCTT
i canFam3.chr9              C 0 I 3
s dasNov3.JH570468            559880 5 -   852752 TACTT
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22862056 5332 + 28711273 I
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=99526.000000
s hg38.chr17_JH159148v1_alt    47826 17 +    88070 AATTTTGGCCTCATAAA
s panTro5.chr17             16358893 17 + 83181570 AATTTTGGCCTCATAAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16263820 17 + 83442489 AATTTTGGCCTCATAAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4110769 17 +  4267968 AATTTTGGCCTCATAAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2098925 17 -  2193130 AATTTTGGCCTCATGAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28055907 17 - 80997621 AATTTTGGCCTCATAAA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2112418 17 + 10377808 AATTTTGGCCTCATAAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2003797 17 -  8458610 AATTTTGGCCTCATAAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64942770 17 + 75148670 AATTTTGGCCTCATAAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2188638 17 +  4244037 AATTTTGGCCTCATAAA
i manLeu1.NW_012106252v1    C 0 C 0
s saiBol1.JH378271           1885672 17 +  3513951 CATGTTGGTCTCACAAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       21128 17 -  4077172 CATGTTGGCCTCACAAA
i cebCap1.NW_016107543v1    C 0 T 6286
s aotNan1.NW_018505111v1       14939 17 -    94492 CATGTTGGCCTCACAAA
i aotNan1.NW_018505111v1    C 0 C 0
s canFam3.chr9              21520184 14 + 61074082 AGTTCCTGCACCAA---
i canFam3.chr9              I 3 C 0
s dasNov3.JH570468            559885 16 -   852752 CCTTTTTACCTCAAGA-
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2209638  0 +  4569836 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=157068.000000
s hg38.chr17_JH159148v1_alt    47843 36 +    88070 GCATAGAAGATTGTTTTAACCCATTAGATAACTCAG
s panTro5.chr17             16358910 29 + 83181570 AC-------ATTGTTTTAACCCATTAGATAGCTCAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16263837 29 + 83442489 AC-------ATTGTTTTAACCCATTAGATATCTCAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4110786 36 +  4267968 ACATAGAAGATTATTTTAACCCATTAGATAGCTCAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2098942 36 -  2193130 ACATAGAAGATTGTTGTAACCCATTAGATAGCTCAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28055924 36 - 80997621 ACATAGAAGATTGTTTTAACCCATCAGATAGCTCAG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2112435 36 + 10377808 ACATAGAAGATTGTTTTAACCCATCAGATAGCTCAG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2003814 36 -  8458610 ACATAGAAGATTGTTTTAACCCATCAGATAGCTCAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64942787 36 + 75148670 ACATAGAAGATTGTTTTAACCCATCAGGTAGCTCAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2188655 36 +  4244037 ACATAGAAGATTGTTTTAACCCATCAGATAGCTCAG
i manLeu1.NW_012106252v1    C 0 C 0
s saiBol1.JH378271           1885689 32 +  3513951 ATGCAGAAGG----TTTATTCCCTTCCTTGGCTCAG
i saiBol1.JH378271          C 0 T 18681
s aotNan1.NW_018505111v1       14956 36 -    94492 ATGCAGAAGGTTGTTTTATTCCCTTCCTTGGCTCAG
i aotNan1.NW_018505111v1    C 0 C 0
s canFam3.chr9              21520198 36 + 61074082 ATGCCAGAGATTGTTTTGTTCCCTTCTATGATTCAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            559901 36 -   852752 AAACAGGTGGTGGTTTAGTTTCCTTAGATGGTCAAG
i dasNov3.JH570468          C 0 C 0
e cebCap1.NW_016107543v1       21145 6286 -  4077172 T
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2209638  0 +  4569836 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=502474.000000
s hg38.chr17_JH159148v1_alt    47879 89 +    88070 AGATTATGGATTATGCAAAG---TCATATGTGCCTGTTGCATAGTGTCTCAATCCTAAACTTTGTCCTTACTTAATTTTCCTGATAACATTT
s panTro5.chr17             16358939 89 + 83181570 AGATTATGGATTATGCAAAG---TCATATGCGCCTGTTGCATAGTGTCTCAATCCTAAACTTTGTCCTTATTTAATTTTCCTGATAACATTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16263866 89 + 83442489 AGATTATGGATTATGCAAAG---TCATATGCGCCTGTTGCATAGTGTCTCAATCCTAAACTTTGTCCTTATTTAATTTTCCTGATAACATTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4110822 89 +  4267968 AGATTATGGATTATGCAAAG---TCATATGTGCCTGTTGCATAGTGTCTCAATCCTAAACTTTGTCCTTACTTAATTTTCCTGATAACATTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2098978 89 -  2193130 AGATTATGGATTATGCAAAG---TCATATGTGCCTGTTGCATGGTGTCTCAATCCCAAACTTTGTCCTTACTTAATTTTCCTGATAACATTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28055960 87 - 80997621 AGATTATGGATTATGC--AG---TCATATGTGCCTGTTGCATAGTGTCTCAATCCCAAACTTTGTCCTTACTTAATTTTCCTGACAGCATTT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2112471 87 + 10377808 AGATTATGGATTATGC--AG---TCATATGTGCCTGTTGCATAGTGTCTCAATCCCAAACTTTGTCCTTACTTAATTTTCCTGACAGCATTT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2003850 87 -  8458610 AGATTATGGATTATGC--AG---TCATATGTGCCTGTTGCATAGTGTCTCAATCCCAAACTTTGTCCTTACTTAATTTTCCTGACAGCATTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64942823 87 + 75148670 AGATTATGGATTATGC--AG---TCATATGTGCCTGTTGCATAGTGTCTCAATCCCAAACTTTGTCCTTACTTAATTTTCCTGACAGCATTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2188691 87 +  4244037 AGATTATGGATTATGC--AG---TCATATGTGCCTGTTGCATAGTGTCTCAATCCCAAACTTTGTCCTTACTTAATTTTCCTGACAGCATTT
i manLeu1.NW_012106252v1    C 0 C 0
s saiBol1.JH378271           1867040 88 +  3513951 AGATTATGGTTTGTGCAAAG---CCATACATGCCCACTCGATAGTCCCTCAATCCCTAAATATGTT-TTACATAATTTTCCTAGTAACAGTT
i saiBol1.JH378271          T 18681 I 2
s aotNan1.NW_018505111v1       14992 89 -    94492 AGATCATGGATTGTGCCAAG---TCTTACACGCCCATTGCATAGTTTCTCAATTCCCAGCTTTGTTCTTACTTAATTTTCCTCATAACGTTT
i aotNan1.NW_018505111v1    C 0 T 6562
s canFam3.chr9              21520234 92 + 61074082 AGGTCCTGCATTACTCCAAGTCATCATACATGCCCACTGCACAGGCGCTTGGTCCGAGATCTTCCCCTTCCTTCCTTTTCTTGGGGACATGT
i canFam3.chr9              C 0 C 0
s dasNov3.JH570468            559937 89 -   852752 AGATTTTGAATTGATCAAAA---TCACACAAGCACATTGTACTGTTTTCAGTTGTCAAGATTTATCCTTACTTAATTTTCTTAGTAATGCTT
i dasNov3.JH570468          C 0 C 0
e cebCap1.NW_016107543v1       21145 6286 -  4077172 T
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2209638  0 +  4569836 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=311070.000000
s hg38.chr17_JH159148v1_alt    47968 72 +    88070 TTATCAGGAAGTCAAATTGTCTAAATGTTGC------A--TAAGGTATGGTCTGTATTTTACATGGAATTACTTAATTCC
s panTro5.chr17             16359028 72 + 83181570 TTATCAGGAAGTCAAATTGTCTAAATGTTGC------A--TAAGGTATGGTCTGTATTTTACATGGAATTATTTAATTCC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16263955 72 + 83442489 TTATCAGGAAGTCAAATTGTCTAAATGTTGC------A--TAAGGTATGGTCTGTATTTTACATGGAATTATTTAATTCC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4110911 72 +  4267968 TTATCAGGAAGTCAAATTGTCTAAATGTTGC------A--TAAGGTATGGTCTGTATTTTACATGGAATTACTTAATTCC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2099067 72 -  2193130 TTATCAGGAAGTCAAATTGTCTAAATGTTGC------G--TAAGGTATGGTCTGTATTTTACATGGAATTACTTAATTCT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28056047 72 - 80997621 TTATCAGGAAGTCAAATTGTCTAAATGTTGC------A--TAATGTATGGTCTGTGTTTTACATGGAATTACTTAATTCC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2112558 72 + 10377808 TTATCAGGAAGTCAAATTGTCTAAATGTTGC------A--TAATGTATGGTCTGTGTTTTACATGGAATTACTTAATTCC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2003937 72 -  8458610 TTATCAGGAAGTCAAATTGTCTAAATGTTGC------A--TAATGTATGGTCTGTGTTTTACATGGAATTACTTAATTCC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64942910 72 + 75148670 TTATCAGGAAGTCAAATTGTCTAAATGTTGC------A--TAATGTATGGTCTGTGTTTTATGTGGAATTACTTAATTCC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2188778 72 +  4244037 TTATCAGGAAGTCAAATTGTCTAAATGTTGC------A--TAATGTATGGTCTGTGTTTTACATGGAATTACTTAATTCC
i manLeu1.NW_012106252v1    C 0 C 0
s saiBol1.JH378271           1867130 65 +  3513951 ATTTCAGGGA--CAATTTGACTTAATGTTGC------T--TAATGCATTGTCCACATTTTAGAGGAAA-----TAATTTC
i saiBol1.JH378271          I 2 C 0
s canFam3.chr9              21520326 68 + 61074082 TGATCATAATGCCAAATT------ACATTCC------AGCTGGGGAGCAGGATGTGTTTGGCAGAAAGTTGCCTGATGCC
i canFam3.chr9              C 0 I 120
s dasNov3.JH570468            560026 70 -   852752 TGATCAAGG---CAAATTG----AAAGCTGTTAGAGAA--CAATATCTTGTCTAGGATCAGCAGGCATTTAGTTATTCC-
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1       15081 6562 -    94492 T
e cebCap1.NW_016107543v1       21145 6286 -  4077172 T
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2209638  0 +  4569836 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=14532.000000
s hg38.chr17_JH159148v1_alt    48040 3 +    88070 ATT
s panTro5.chr17             16359100 3 + 83181570 ATT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16264027 3 + 83442489 ATT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4110983 3 +  4267968 ATT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2099139 3 -  2193130 ATT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28056119 3 - 80997621 ATT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2112630 3 + 10377808 ATT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2004009 3 -  8458610 ATT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64942982 3 + 75148670 ATT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2188850 3 +  4244037 ATT
i manLeu1.NW_012106252v1    C 0 C 0
s saiBol1.JH378271           1867195 3 +  3513951 GTT
i saiBol1.JH378271          C 0 C 0
s dasNov3.JH570468            560096 3 -   852752 CTT
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1       15081 6562 -    94492 T
e cebCap1.NW_016107543v1       21145 6286 -  4077172 T
e canFam3.chr9              21520394 120 + 61074082 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2209638 0 +  4569836 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=346429.000000
s hg38.chr17_JH159148v1_alt    48043  86 +    88070 TTGCTCTTTCAATGAAATTT--CAGC----AGGAGGCCAGATATGAATTTGATTTATTTGATACGAAG----GAATT-------------AGTCTCTTCAAATGAGGAT
s panTro5.chr17             16359103  86 + 83181570 TTGCTGTTTCAATGAAATTT--CAGG----AGGAGGCCAGATATGAATTTGATTTATTTGATACGAAG----GAATT-------------AGTCTCTTCAAATGAGGAT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16264030  86 + 83442489 TTGCTGTTTCAATGAAATTT--CAGG----AGGAGGCCAGATATGAGTTTGATTTATTTGACACGAAG----GAATT-------------AGTCTCTTCAAATGAGGAT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4110986  86 +  4267968 TTGCTCTTTCAATGAAATTT--TAGG----AGGAGGCCAGATATGAATTTGATTTATTTGATAAGAAG----GAATT-------------AGTCTCTTCAAATGAGGAT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2099142  86 -  2193130 TTGCACTTTCAAAGAAATTT--CAGG----AGGAGGCCAGATATGAATTTGATTTATATGATACGAAG----GAATT-------------AGTCTCCTCAAATGAGGAT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28056122  89 - 80997621 TTGCTCTTTCAATGAAATTT--CAGG-AGAAGGAGGCCAGATATGAATTTGATTTATGTGATACAAAG----GAATT-------------AATCTATTCAGAAGAGGAC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2112633  89 + 10377808 TTGCTCTTTCAATGAAATTT--CAGG-AGAAGGAGGCCAGATATGAATTTGATTTATGTGATACAAAG----GAATT-------------AATCTATTCAGAAGAGGAC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2004012  86 -  8458610 TTGCCCTTTCAATGAAATTT--CAGG----AGGAGTCCAGATATGAATTTGATTTATGTGATACAAAG----GAATT-------------AATCTATTCAGAAGAGGAC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64942985  89 + 75148670 TTGCTCTTTCAATGAAATTT--CAGG-AGAAGGAGGTCAGATATGAATTTGATTTGTGTGATACAAAG----GAATT-------------AATCTATTCAGAAGAGGAC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2188853  89 +  4244037 TTGCTCTTTCAATGAAATTT--CAGG-AGAAGGAGGCCAGATATGAATTTGATTTATGTGATACAAAG----GAATT-------------AATCTATTCAGAAGAGGAC
i manLeu1.NW_012106252v1    C 0 C 0
s saiBol1.JH378271           1867198  93 +  3513951 TTGCTTTGTCAACAGGTATC--CAGG-AGAGGGAAGCCATATACGAATATTATTTACATGATATAAATTCTCAGATC-------------AGACTCTCTTTCTTGGGAC
i saiBol1.JH378271          C 0 C 0
s canFam3.chr9              39589507 100 - 61074082 TTACTATATTGAGAGAGATT--TAGT-AGAAGGAGGCTATTCA-GAATTGGATTTACACAATACAGAG----AAAGTCAGTTTAGATAAGAGTCTCTCTTG-TGAGGAC
i canFam3.chr9              I 2025 C 0
s dasNov3.JH570468            560099  87 -   852752 ----TTATCCATTGACATGTGCTAGGAAGAAAGATGTCACACA-GAATTTGTTTTGCACAAGACCATG----GAACA-------------GGTCCCTTTAGAAGAGCAT
i dasNov3.JH570468          C 0 I 34
e aotNan1.NW_018505111v1       15081 6562 -    94492 T
e cebCap1.NW_016107543v1       21145 6286 -  4077172 T
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2209638   0 +  4569836 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=78865.000000
s hg38.chr17_JH159148v1_alt    48129 17 +    88070 ATGATGCATTCTGAAAA
s panTro5.chr17             16359189 17 + 83181570 ATGATGCATTCTGAAAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16264116 17 + 83442489 ATGATGCATTCTGAAAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4111072 17 +  4267968 ATGATGCATTCTGAAAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2099228 17 -  2193130 ACGATGCATTCTGAAAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28056211 17 - 80997621 ACGATGCATTCTGAAAA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2112722 17 + 10377808 ACGATACATTCTGAAAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2004098 17 -  8458610 ACGATGCATTCTGAAAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64943074 17 + 75148670 ACGATGCATTCTGAAAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2188942 17 +  4244037 ATGATGCATTCTGAAAA
i manLeu1.NW_012106252v1    C 0 C 0
s saiBol1.JH378271           1867291 17 +  3513951 AGAATGCATTCTCACAA
i saiBol1.JH378271          C 0 C 0
s canFam3.chr9              39589607 17 - 61074082 ACAGTGGATGCTAACTA
i canFam3.chr9              C 0 T 2106
e aotNan1.NW_018505111v1       15081 6562 -    94492 T
e cebCap1.NW_016107543v1       21145 6286 -  4077172 T
e dasNov3.JH570468            560186 34 -   852752 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2209638  0 +  4569836 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=6940.000000
s hg38.chr17_JH159148v1_alt    48146 3 +    88070 GTT
s panTro5.chr17             16359206 3 + 83181570 GTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16264133 3 + 83442489 GTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4111089 2 +  4267968 G-T
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2099245 3 -  2193130 GTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28056228 3 - 80997621 GTT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2112739 3 + 10377808 GTT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2004115 3 -  8458610 GTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64943091 3 + 75148670 GTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2188959 3 +  4244037 GTT
i manLeu1.NW_012106252v1    C 0 C 0
s saiBol1.JH378271           1867308 3 +  3513951 ATG
i saiBol1.JH378271          C 0 I 12313
e aotNan1.NW_018505111v1       15081 6562 -    94492 T
e cebCap1.NW_016107543v1       21145 6286 -  4077172 T
e canFam3.chr9              39589624 2106 - 61074082 T
e dasNov3.JH570468            560186 34 -   852752 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e colAng1.NW_012122154v1     2209638 0 +  4569836 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=3458549.000000
s hg38.chr17_JH159148v1_alt    48149 893 +    88070 TTTGATGTGtcctcttgaaaaccagaacaaggcaaacatgccatatctcaccactcctattcaaaatagtaatgaaagtcctagccagagaaatatggcaagagaaataaagtaaaggtatctagataggaaaagtggaagttaaactatctctgtgtgtgaagaagattttacacccagaaaacctcattgtctctacccaaaaactccttgatctgattagcaacttcagcaaagtttcaggatacaaaattattgtacaaaaatcagtagcattcctatacaccaacaacatccaagttgagagccaaatcaataatgtaatccttttcacaatagccac-aaaaaacaacaaaatacctaggaatacagccaaccagggaggtgaaagatctctgcaacaagaattgcaaaacactgctcaaagaaattaaagatgacacaaacaaattgaaacatattttatgctcatgggtagaaagaatcaatattgttaaaatggccatactccctaaagcaatttacagattcagtatcactcctatcaaactaccaatgacagccttcacagaatgag-a-aaaaaaatgttttacaattcatatggaaccaaaaaagagcctgaatggccaaggcaatcctaagcaaaaataacaaagctgaagacatcacattatctgacttcaaactacattac-aggctgcaataaccaaaaccgcatggtactggtacaaaaacagacacacagaccaatggaacagaatacagagcccagaaataatgttgcacacctacaacatgtgatcttcagcaaagttgatgaaaataggcagtgggga-aaagactcctgatttaataaatggtgctga------gataactggctagtcatttgcagaaga
s panTro5.chr17             16359209 894 + 83181570 TTTGATGTGtcctcttgaaaaccagaacaacgcaaacatgccatatctcaccactcctattcaaaatagtaatgaaagtcctagccagagaaatatggcaagagaaataaagtaaaggtatctagataggaaaagtggaagttaaactatctctgtgtgtgaataagattttacacccagaaaacctcattgtctctacccaaaaactccttgatctgattagcaacttcagcaaagtttcaggacacaaaattattgtacaaaaatcagtagcattcctatacaccaacaacatccaagttgagggccaaatcaataatgtaatccttttcacaatagccac-aaaacacaacaaaatacctaggaatacagccaaccagggaggtgaaagatctctacaacaagaattgcaaaacactgctcaaagaaattaaagatgacacaaacaaattgaaacacattttatgctcatgggtagaaagaatcagtattgttaaaatggccatactccctaaagcaatttacagattcagtatcactcctatcaaactaccaatgacagccttcacagaatgagaa-aaaaaaaagttttacaattcatatggaaccaaaaaagagcctgaatggccaaggcgatcctaagcaaaaataacaaagctgaagacatcacattatctgacttcaaactacattac-aggctgcaataaccaaaacctcatggtactggtacaaaaacagacacatagaccaatggaacagattacagagcccagaaataatgttgcacacctacaacatgtgatcttcagcaaagttgatgaaaataggcagtgggga-aaagactcctgatttaataaatggtgttga------gataactggctagtcatttgcagaaga
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16264136 894 + 83442489 TTTGATGTGtcctcttgaaaaccagaacaatgcaaacatgccatatctcaccactcctattcaaaatagtaatgaaagtcctagccagagaaataaggcaagagaaataaagtaaaggtatctagataggaaaagtggaagttaaactatctctgtgtgtgaataagattttacacccagaaaacctcattgtctctacccaaaaactccttgatctgattagcaacttcagcaaagtttcaggacacaaaattattgtacaaaaatcagtagcattcctatacaccaacaacatccaagttgagggccaaatcaataatgtaatccttttcacaatagccac-aaaacacaacaaaatacctaggaatacagccaaccagggaggtgaaagatctctacaacaagaattgcaaaacactgctcaaagaaattaaagatgacacaaacaaattgaaacacattttatgctcatgggtagaaagaatcagtattgttaaagtggccatactccctaaagcaatttacagattcagtatcactcctatcaaactaccaatgacagccttcacagaatgagaa-aaaaaaaagttttacaattcatatggaaccaaaaaagagcctgaatggccaaggcgatcctaagcaaaaataacaaagctgaagacatcacattatctgacttcaaactacattac-aggctgcaataaccaaaacctcatggtactggtacaaaaacagacacatagaccaatggaacagattacagagcccagaaataatgttgcacacctacaacatgtgatcttcagcaaagttgatgaaaataggcagtgggga-aaagactcctgatttaataaatggtgctga------gataactggctagtcatttgcagaaga
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4111091 894 +  4267968 TTTGATGTGtcctcttgaaaaccagaacaaggctaacatgccatatctcaccactcctattcaaaatagtaatgaaagtcctagccagagaaatatggcaagagaaataaagtaaaggtatctagataggaaaagtggaagttaaactatctctgtgtgtgaataagattttacacccagaaaacctcattgtctctacccaaaaactccttgatctgattagcaacttcagcaaagtttcaggatataaaattattgtacaaaaatcagtagcattcctatacaccaacaacatccaagttgagagccaaatcaataatgtaatcctttccacaatagccac-aaaaaacaacaaaatacctaggaatacagccaaccagggaggtgaaagatctctacaacaagaattgcaaaacactgctcaaagaaattaaagatgacacaaacaaattgaaacacattttatgctcatgggtagaaagaatcaatattgttaaaatggccgtactccctaaagcaatttacagattcagtatcactcctatcaaactaccaatgacagccttcacagaatgagaa-aaaaaaatgttttacaattcatatggaaccaaaaaagagcctgaatggccaaggccatcctaagcaagaataacaaagctgaagacatcacattatctgacttcaaactacattac-aggctgcaataaccaaaaccgcatggtactggtacaaaaacagacacatagaccaatggaacagaaaacagagcccagaaataatgtggcacacctacaacatgtgatcttcagcaaagttgatgaaaataggcagtgggga-aaagactcctgatttaataaatggtgctga------gttaactggctagtcatttgcagaaga
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2099248 893 -  2193130 TTTGATGCGtcctcttgaaaaccagaacaagacaaacatgccatatctcaccactcctattcaaaatagtaatggaagttctagccagagaaatatggcaagagaaataaaataaaggtatctagataggaaaagtggaagttaaactatctctgtgtgtgaataagattttacacccagaaaacctcatagtctctacccaaaagctccttgatctaattggcaacttcagcaaagtttcaggatactaaattattgtacaaaaatcagtagtattcctatacaccaacaacatcccagttaagagccaaatcaataatgtaatccttttcacaatagccac-aaaaaacaacaaaatacctaagaatacagcccacctgggaggtgaaagatctctacaacaagaattgcaaaacactgctcaaagaaattaaagatgacacaaacaaactgaaacacattttatgctcatgggtagaaagaatcaatattgttaaaatgaccatactccctaaagcaatgtaccgattcaatatcattcctatcaaactaccaatgacaaccttcacagaatgag-g-aaaaaaatgttttacaattcatgtggaaccaaaaaagagcctgaatggccaaggcaatcctaagcaaaaataacaaagctgaagacatcacattatctgacttcaaactacattac-aggctacaataaccaaaactgcatggtactggtacaaaaacagacacatagaccaatgggacagaatacagagcccagaaataatgttgcacacctacaacatgtgatcttcagcaaagctgatgaaaataggcaatgggga-aaagactcctgatttaataagtggtgctga------gataactggctagtcatttgcagaaga
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28056231 893 - 80997621 TTTGATGCAAcctcttgaaaaccagaacaagacaaacatgccatatcttaccagtcctattcaaaatagtaatggaagtcctagccagagaaatatggcaagagaaagaaattaaaggtatctagataggaagagtggaagttaaactatctctgtgtgtgaataagattttacacccagaaaacctcatagtctctacccaaaagctccttgatctgattagcaacttcagcaaagtttcaggatacaaaattattgtagaaaaatcagtagcattcctatacaccaacaacatccaagctgagagcaaaatcaataatgtaatccttttcacaatagccac-aaaaaacaacaaaatacctaggaatacagccaaccagggaggtgaaaaatc-ctacaacaagaattgcaaaacactgctcaaagaaattagagatgacaaaaacaaattgaaacacattttatgttcatgggtagaaagaatcaatattgttaaagtggccatactccctaaaacaatttacagattcaatattactcctatcaaactaccaatgacagccttc-cagcatgat-g-aaaaaaatgttttacaattcatatggaaccaaaaaagagtctgaatggccaaggcaatcataagcaaaaataacaaagctgaagacgtcacattatctgacttcaaactacattacaaggctacaataaccaaaaccacatggtactggtacaaaaacagacacatagaccagtggaacagaatacagaacccagaaataatgttgcacacctacaacatgtggtctttagcaaagttgatgaaaacaggcaatggggaaaaagactccttatttaataaatggtgctga------gataactggctagccatttgcagaaga
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2112742 894 + 10377808 TTTGATGCAAcctcttgaaaaccagaacaagacaaacatgccatatcttaccagtcctattcaaaatagtaatggaagtcctagccagagaaatatggcaagagaaagaaattaaaggtatctagataggaagagtggaagttaaactatctctgtgtgtgaataagattttacacccagaaaacctcatagtctctacccaaaagctccttgatctgattagcaacttcagcaaagtttcaggatacaaaattattgtagaaaaatcagtagcattcctatacaccaacaacatccaagctgagagcaaaatcaataatgtaatccttttcacaatagccacaaaaaaacaacaaaatacctaggaatacagccaaccagggaggtgaaaaatc-ctacaacaagaattgcaaaacactgctcaaagaaattagagatgacaaaaacaaattgaaacacattttatgttcatgggtagaaagaatcaatattgttaaagtggccatactccctaaaacaatttacagattcaatattactcctatcaaactaccaatgacagccttc-cagcatgat-g-aaaaaaatgttttacaattcatatggaaccaaaaaagagtctgaatggccacggcaatcataagcaaaaataacaaagctgaagacgtcacattatctgacttcaaactacattacaaggctacaataaccaaaaccacatggtactggtacaaaaacagacacatagaccagtggaacagaatacagaacccagaaataatgttgcacacctacaacatgtggtctttagcaaagttgatgaaaacaggcaatggggaaaaagactccttatttaataaatggtgctga------gataactggctagccatttgcagaaga
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2004118 895 -  8458610 TTTGATGCAAcctcttgaaaaccagaacaagacaaacatgccatatcttaccagtcctattcaaaatagtaatggaagtcctatccagagaaatatggcaagagaaagaaattaaaggtatctagataggaagagtggaagttaaactatctctgtgtgtgaataagattttacacccagaaaacctcatagtctctacccaaaagctccttgatctgattagcaacttcagcaaagtttcaggatacaaaattattgtagaaaaatcagtagcattcctatacaccaacaacatccaagctgagagcaaaatcaataatgtaatccttttcacaatagccac-aaaaaacaacaaaatacctaggaatacagccaaccaaggaggtgaaaaatc-ttacaacaagaattgcaaaacactgctcaaagaaattagagataacaaaaacaaattgaaacacattttatgttcatgggtagaaagaatcaatattgctaaagtggccatactccctaaaacaatttacagattcaatattactcctatcaaactaccaatgacagccttcacagcatgat-gaaaaaaaatgttttacaattcatatggaaccaaaaaagagcctgaatggccaaggcaatcataagcaaaaataacaaagctgaagacatcacgttatctgacttcaaactacattacaaggctacaataaccaaaaccacatggtactggtacaaaaacaggcacatagaccagtggagcagaatacagaacccagaaataatgttgcacacctacaacatgtggtcttcagcaaagttgatgaaaacaggcaatggggagaaagactccttatttaataaatggtgctga------gataactggctagccatttgcagaaga
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64943094 898 + 75148670 TTTGATGCAAcctcttgaaaaccagaacaagacaaacatgccatatcttaccagtcctattcaaaatagtaatggaagtcctagccagagaaatatggtaagagaaagaaattaaaggtatctagataggaagagtggaaattaaactatctctgtgtgtgaataagattttacacccagaaaacctcatagtctctacccaaaa-ctccttgatctgattagcaacttcagaaaagtttcaggacacaaaattattgtagaaaaatcagcagcattcctatacaccaacaacatccaagctgagagcaaaatcaacaatgtaatccttttcacaatagccac-aaaaaacaacaaaatacctaggaatacagccaaccagggaggtgaaaaatc-ctacaacaagaattgcaaaacactgctcaaagaaattagagatgacaaaaacaaattgaaacacattttatgttcatgggtagacagaatcaatattgttaaagtggccatactccctaaaacaatttacagattcaatattactcctatcaaactaccaatgacaggcttc-cagcatgat-g-aaaaaaatgttttacaattcatatggaaccaaaaaagagtctgaatggccaaggcaatcataagcaaaaataacaaagctgaagacgtcacattatctgacttcaaactacattacaaggctacaataaccaaaaccacatggtactggtacaaaaacagacacatagaccagtggaacagaatacagaacccagaaataatgttgcacacctacaacatgtggtctttagcaaagttgatgaaaacaggcaatggggaaaaagactccttatttaataaatggtgctggctatttaataactggctagccatttgcagaaaa
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2188962 893 +  4244037 TTTGATGCAAcctcttgaaaaccagaacaagacaaacatgccatatcttaccagtcctattcaaaatagtaatggaagtcctagccagagaaatatggcaagagaaagaaattaaaggtatctagataggaagagtggaagttaaactatctctgtgtgtgaataagattttacacccagaaaacctcatagtctctacccaaaagctccttgatctgattagcaacttcagcaaagtttcaggatacaaaattattgtagaaaaatcagtagcattcctatacaccaacaacatccaagctgagagcaaaatcaataatgtaatccttttcacaatagccac-aaaaaacaacaaaatacctaggaatacagccaaccagggaggtgaagaatc-ctacaacaagaattgcaaaacactgctcaaagaaattagagatgacaaaaacaaattgaaacacattttatgttcatgggtagaaagaatcaatattgttaaagtggccatactccctaaaacaatttacagattcaatattacttctatcaaactaccaatgacagccttc-cagcatgat-g-aaaaaaatgttttacaattcatatggaaccaaaaaagagtctaaatggccaaggcaatcataagcaaaaataacaaagctgaagatgtcacattatctgacttcaaactacattacaaggctacaataaccaaaaccacatggtactggtacaaaaacagacacatagaccagtggaacagaatacagaacccagaaataatgttgcacacctacaacatgtggtctttagcaaagctgatgaaaacaggcaatggggaaaaagactccttatttaataaatggtgctga------gataactggctagctatttgcagaaga
i manLeu1.NW_012106252v1    C 0 I 6236
e aotNan1.NW_018505111v1       15081 6562 -    94492 T
e cebCap1.NW_016107543v1       21145 6286 -  4077172 T
e canFam3.chr9              39589624 2106 - 61074082 T
e dasNov3.JH570468            560186  34 -   852752 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e saiBol1.JH378271           1867311 12313 +  3513951 I
e colAng1.NW_012122154v1     2209638   0 +  4569836 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=1392341.000000
s hg38.chr17_JH159148v1_alt    49042 358 +    88070 ttgaaactggaccccttccttacatggtatacaaaaatcaactcaagatggatcaaaaacttacatgtaaaacctaaggctataaaaacgctggcagacaacctaggcaataccattctaaacataggaccaggcaaggattttatgatgaagtcaccaaaagtaattgtaaaaagagaaaaaattgacaaatgggacctaattaaacttaagagcttctgcacagcaaaagaaactatcaacagagtaaacagacaacctacagaatgggagagaatatttgcaagctatctatccaacaaaggtctaatatccagaatctgtaaggaagttaa-------------------------acaaatttacaagcaaaaaccaa
s panTro5.chr17             16360103 358 + 83181570 ttgaaactggaccccttccttacatggtatacaaaaatcaactcaagatggatcgaagacttacatgtaaaatctaaggctataaaaaccctggcagacaacctaggcaataccattctaaacataggaccaggcaaggattttatgatgaagtcaccaaaagtaattgtaaaaagagaaaaaattgacaaatgggacctaattaaacttaagagcttgtgcacagcaaaagaaactatcaacagagtaaacagacaacctacagaatgggagagaatatttgcaagctatctatccaacaaaggtctaatatccagaatctgtaaggaagttaa-------------------------acaaatttacaagcaaaaaccaa
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16265030 358 + 83442489 ttgaaactggaccccttccttacatgatatacaaaaatcaactcaagatggatcgaagacttacatgtaaaacctaaggctataaaaaccctggcagacaacctaggcaataccattctaaacataggaccaggcaaggattttatgatgaagtcaccaaaagtaattgtaaaaagagaaaaaattgacaaatgggacctaattaaacttaagagcttctgcacagcaaaagaaactatcaacagagtaaacagacaacctacagaatgggagagaatatttgcaagctatctatccaacaaaggtctaatatccagaatctgtaaggaagttaa-------------------------acaaatttacaagcaaaaaccaa
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4111985 358 +  4267968 ttgaaactggaccccttccttacatggtatacaaaaatcaactcaagatggatcaaagacttacatgtaaaacctaaggctataaaaaccctggcagacgacctaggcaataccattctaaacataggaccaggcaaggattttatgatgaagtcaccaaaagtaattgtaaaaagagaaaaaattgacaaatgggacctaattaaacttaagagcttctgcacagcaaaagaaactatcaacagagtaaacagacaacctacagaatgggagagaatatttgcaagctatctatccaacaaaggtctaatatccagaatctgtaaggaagttta-------------------------acaaatttacaagcaaaaaccaa
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2100141 383 -  2193130 ttgaaactggaccccttccttacatggtatacaaaaatcgcctcaagatggatcaaagacatacatgtaaaacctaaggctataaaaaccctggcagacaacctaggcaataccattctaaacataggaccaggcaaggattttatgatgaagtcaccaaaagtaattgcaaagggagaaaaaattgacaaatgggacctaattaaactaaagagcttctgcacagcaaaagaaactatcaacagagtaaacagacaacctacagaatgggagagaatatttgcaagctatctatccaacaaaggtttaatatccagaatctataaggaagttaatatccagaatctataaggaagttacacaaatttacaagcaaaaaccaa
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28057124 357 - 80997621 ttgaaactggaccccttccttacatgatatacaaaaatcaactcaagatggatcaaagacatacatgtaaaacctaaggctgtaaaaaccctga-agacaccctaggcaataccattcccaacatagggccaggcaaggattttatgacgaagtcaccaaaagtaattgcaaaaagagaaaaaattggcaaatggaacctaattaaactaaagagcttctgcacagcaaaagaaactatgaacagagtaaacagacaacctacagactgggagagaatatttgcaagctatctatccaacaaaggtctaatatccagaatctgtaaggaagttaa-------------------------acaaatttacaagcaaaacccaa
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2113636 357 + 10377808 ttgaaactggaccccttccttacatgatatacaaaaatcaactcaagatggatcaaagacatacatgtaaaacctaaggctgtaaaaactctga-agacaccctaggcaataccattcccaacatagggccaggcaaggattttatgacaaagtcaccaaaagtaattgcaaaaagagaaaaaattggcaaatggaacctaattaaactaaagagcttctgcacagcaaaagaaactatgaacagagtaaacagacaacctacagaccgggagagaatatttgcaagctatctatccaacaaaggtctaatatccagaatctgtaaggaagttaa-------------------------acaaatttacaagcaaaacccaa
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2005013 357 -  8458610 ttgaaactggaccccttccttacatgacatacaaaaatcaactcaagatggatcaaagacatacatgtaaaacctaaggctgtaaaaaccctga-agacaacctaggcaataccattcccaacataggaccaggcaaggattttatgatgaagtcaccaaaagtagttgcaaaaagagaaaaaattggcaaatggaacctaattaaactaaagagcttctgcacagcaaaagaaactatgaacagagtaaacagacaacctacagactgggagagaatatttgcaagctatctatccaacaaaggtctaatatcaagaatatgtaaggaagttaa-------------------------acaaatttacaagcaaaacccaa
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64943992 357 + 75148670 ttgaaactggaccccttccttacatgatatacaaaaatcaactcaagatggatcaaagacatacatgtaaaacctagggctgtaaaaaccctga-agacaccctaggcaataccattcccaacatagggccaggcaaggattttatgatgaagtcaccaaaagtaattgcaaaaagagaaaaaattggcaaatggaacctaattaaactaaagagcttctgcacagcaaaagaaactatgaacagagtaaacagacaacctacagactgggagagaatatttgcaagctatctatccaacaaaggtctaatatccagaatctgtaaggaagttaa-------------------------acaaatttacaagcaaaacccaa
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2196091 357 +  4244037 ttgaaactggaccccttccttacatgatatacaaaaatcaactcaagatggatcaaagacatacatgtaaaacctaaggctgtacaaaccctga-agacaccctagtcaatactattcccaacatagggccaggcaaggattttatgatgaagtcaccaaaagtagttgcaaaaagagaaaaaattggcaaatggaacctaattaaactaaagagcttctgcacagcaaaagaaactatgaacagagtaaacagacaacctacagactgggagagaatatttgcaagctgtctatccaacaaaggtctaatatccagaatatgtaaggaagttaa-------------------------acaaatttacaagcaaaacccaa
i manLeu1.NW_012106252v1    I 6236 C 0
e aotNan1.NW_018505111v1       15081 6562 -    94492 T
e cebCap1.NW_016107543v1       21145 6286 -  4077172 T
e canFam3.chr9              39589624 2106 - 61074082 T
e dasNov3.JH570468            560186  34 -   852752 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e saiBol1.JH378271           1867311 12313 +  3513951 I
e colAng1.NW_012122154v1     2209638   0 +  4569836 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=966596.000000
s hg38.chr17_JH159148v1_alt    49400 180 +    88070 acaatctcattagaaagtggtcaaaggacacgaacagacacttttcaaaagaagacattcaagcggcc-aaaaaggatatgaacaaatgatcaacatcactgatgattagagaaatgcaagttaaaaccacaatgagatgccctctgacacaagtcagaatagctcttattaaagtcaaaa
s panTro5.chr17             16360461 180 + 83181570 acaatctcattagaaagtggtcaaaggacattaacagacacttttcaaaagaagacattcaagtggcc-aaaaaggatatgaacaaaggatcaacatcactgatcattagagaaatgcaagttaaaaccacaatgagatgccctctgacacaagtcagaatagctcttgttaaagtcaaaa
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16265388 180 + 83442489 acaatctcattagaaagtggtcaaaggacatgaacagacacttttcaaaagaagacattcaagcggac-aaaaaggatatgaacaaaggatcaacatcactaatcattagagaaatgcaagttaaaaccacaatgagatgccctctgacacaagtcagaatagctcttgttaaagtcaaaa
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4112343 181 +  4267968 acaatctcgttagaaagtggtcaaaggacatgaacagacacttttcaaaagaagacattcaagcggctaaaaaaggatacgaacaaatgatcaacatcactgatcattagagaaatgcaagttaaaaccacaatgagatgccctctgacacaggtcagaatagctcttattaaagtcaaaa
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2100524 180 -  2193130 acaatctcattagaaagtggtcaaaggacatgaacagacccttttcaaaagaagacattcaagcggcc-aaaaaggatatgaacaaatgatcaacatcactgatcattagagaaatgcaagttaaaaccacaatgagatgccctctgacacaagtcagaatagctcttattaaagtcaaaa
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28057481 179 - 80997621 ataatctcattagaaagtggtcaaaggacatgaacagacacttttcaaaagaagacattcaagcggcc-aaaaagggaatgaacaaatgatcaacgtcactgatcgttagagaaacgcaagttaaaaccacaatgagatactctctgacacaa-tcagaatggctcttattaaagtcaaaa
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2113993 179 + 10377808 ataatctcattagaaagtggtcaaaggacatgaacagacacttttcaaaagaagacattcaagcggcc-aaaaagggaatgaacaaatgatcaacgtcactgatcgttagagaaatgcaagttaaaaccacaatgagataccctctgacacaa-tcagaatggctcttattaaagtcaaaa
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2005370 179 -  8458610 acaatctcattagaaagtggtcaaaggacatgaacagacacttttcaaaagaagacattcaagcggcc-aaaaagggaatgaacaaatgatcaacgtcactgatcattagagaaatgcaagttaaaaccacaatgagataccctctgacacaa-tcagaatggctcttattaaagtcaaaa
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64944349 179 + 75148670 ataatctcattagaaagtggtcaaaagacatgaacagacacttttcaaaagaagacattcaagcggcc-aaaaagggaatgaacaaatgatcaacatcgctgatcgttagagaaatgcaagttaaaaccacaatgagataccctctgacacaa-tcagaatggctcttattaaagtcaaaa
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2196448 179 +  4244037 acaatctcattagaaagtggtcaaaggacatgaacagacacttttcaaaagaagacattcaagcggcc-aaaaagggaatgaacaaatgatcaacgtcattgatcgttagagaaatgcaagttaaaaccacaatgagataccctctgacacaa-tcagaatggctcttattaaagtcaaaa
i manLeu1.NW_012106252v1    C 0 C 0
s cebCap1.NW_016107543v1       14859 176 -  4077172 acagtcttattagaaagtggtcaaaggacatgaaca----cttttcaaaagaagacattcaagtggcc-aaaaagcatgtgaacaaataatcaacatcactgatcattagagaaattcatgttaaatccgcaatgagatactttctgacactagtcagaatggctattactaaagtccaaa
i cebCap1.NW_016107543v1    T 6286 C 0
s aotNan1.NW_018505111v1        8519 176 -    94492 acaatcttattagaaagtggtcaaaggacatgaaca----cttttcaaaagaagacattcaagtggcc-aaaaagcatatgaacaaataatcaacatcactgatcattagagaaattcatgttaaatccacaatgagataccctctgacacgagtcagaatggctattactaaagtccaaa
i aotNan1.NW_018505111v1    T 6562 C 0
e canFam3.chr9              39589624 2106 - 61074082 T
e dasNov3.JH570468            560186  34 -   852752 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e saiBol1.JH378271           1867311 12313 +  3513951 I
e colAng1.NW_012122154v1     2209638   0 +  4569836 C
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=1869796.000000
s hg38.chr17_JH159148v1_alt    49580 293 +    88070 aataaaagatgctggcaagtttttgtag--aaaaagaaacacttatacactgttggtggaattgcacattagtttaaccattatggaaagcagttttgggatctctcaaagaacttagaattaatatttgacccagcaattcaatta----------ttgggtatatacccaaatgcatataaattgttctaccataaagacacatgcatgcg-tatgttcattgcagcactactcacaatagcaaagacatagagtcaacttaaaatgtacatcaaaagtagactggataaagaaaatgtgtttc
s panTro5.chr17             16360641 293 + 83181570 aataaaagatgctggcaagtttttgtag--aaaaagaaacacttatacactgttggtggaattgtacattagtttaaccattatggaaagcagttttgggatctctcaaagaacttagaattaatattcgacccagcaattcaatta----------ttgtgtatatatccaaatgaatataaattgttctaccataaagacacatgcatgtg-tatgttcattgcagcactactcacaatagcaaagacatagagtcaacttaaaatgtacatcaaaagtagactggataaagaaaatgtgtttc
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16265568 293 + 83442489 aataaaagatgctggcaagtttttgtag--aaaaagaaacacttatacactgttggtggaattgtacattagtttaaccattatggaaagcagttttgggatctctcaaagaacttagaattaatattcgacccagcaattcaatta----------ttgtgtatatatccaaatgaatataaattgttctaccataaagacacatgcatgtg-tatgttcattgcagcactactcacaatagcaaagacatagagtcaacttaaaatgtacatcaaaagtagactggataaagaaaatgtgtttc
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4112524 293 +  4267968 aataaaagatgctggcaagtttttgtag--aaaaaggaacacttatacactgttggtggaattgtacattagtttaaccattatggaaagcagttttgggatctctcaaagaacttagaattaatattcgacccagcaattcaatta----------ttgggtatatacccaaatgaatataaattgttctaccataaagacacatgcatgca-tatgttcattgcagcactactcacaatagcaaagacatagagtcaacttaaaatgtacatcaaaagtagactggataaagaaaatgtgtttc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2100704 293 -  2193130 aataaaagatactggcaagtttttgtag--aaaaaggaacacttatacactgttggtggaattgtacattagtttaaccattatggaaagcagttttgggatatctcaaagaacttagaattaatatgtggcccagcaattcaatta----------ttgggtatacacccaaatgaatataaattgttcttccataaagacacatgcatgcgttatgttcattgcagcactactcacaatagcaaagacatagagtcaac-taaaatgtacgtcaaaagtagactggataaagaaaatgtgttac
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28057660 292 - 80997621 aataaaagatgatggcaaggttttgtag--aaaaaggaacacttacacaatgttggtggaattgtacattagtttaaccattgtggaaagcagttttgggatctctcaaagaacttagaattaatatttgacccagcaattcaatca----------ctgggtatatatcgaaatgaatataaattgtcctaccataaagacacatgcatgcg-tatgttcattgcagcactactcacaatagaaaagacatagagtcaac-taaaatgtgcatcaaaagtagattggataaagaaaatgtgctac
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2114172 291 + 10377808 aataaaagatgatggcaaggttttgtag--aaaaaggaacacttacacaatgttggtggaattgtacattagtttaaccattgtggaaagcagttttgggatctctcaaagaacttagaattaatatttgacccagcaattcaatca----------ctgggtatatatcgaaatgaatataaattgtcctaccataaagacacatgcatgcg-tatgttcattgcagcactactcacaatagaaaagacatagagtcaac-taaaatgtgcatc-aaagtagattggataaagaaaatgtgctac
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2005549 292 -  8458610 aataaaagatgatggcaaggttttgtag--aaaaaggaacgcttacacaatgttggtggaattgtacattagtttaaccattgtggaaagcagttttgggatctctcaaagaacttagaattaatatttgacccagcaattcaatca----------ctgggtatatatccaaatgaatataaattgtcctaccataaagacacatgcatgcg-tatgttcattgcagcactactcacaatagcaaagacatagagtcaac-taaaatgtgcatcaaaagtagattggataaagaaaatgtgctac
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64944528 292 + 75148670 aataaaagatgatggcaaggttttgtag--aaaaaggaacatttacacaatggtggtggaattgtacattagtttaactatagtggaaagcagttttgggatctctcaaagaacttagaattaatatttgacccagcaattcaatca----------ctgggtatatatccaaatgaatataaattgtcctaccataaagacacatgcatgtg-tatgttcattgcagcactactcacaatagcaaagacatagagtcaac-taaaatgtgcatcaaaagtagattggataaagaaaatgtgctac
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2196627 302 +  4244037 aataaaagatgatggcaagattttgtag--aaaaaggaacacttacacaatgttggtggaattgtacattagtttaaccattgtggaaagcggttttgggatctctcaaagaacttagaattaatatttgacccagcaattcaatcactgggtatatctgggtatatatccaaatgaatataaattgtcctaccataaagacacatgcatgcg-tatgttcattgcagcactactcacaatagcaaagacatagagtcaac-taaaatatgcatcaaaagtagattggataaagaaaatgtgctac
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2209638 292 +  4569836 aataaaagatgatggcaaggttttttag--aaaaaggaacacttacacaatgttggtggaattgtacattagtttaaccattgtggaaagcacttttgggatctctcaaagaacttagaattaatatttgacccagcaattcaatca----------ttggttatatatccaaatgaatataaattgtcctaccataaagacacatgcatgcg-tatgttcattgcagcactactcacaatagcaaagacatagagtcaac-taaaatgtgcatcaaaagtagattggataaagaaaatgtgctac
i colAng1.NW_012122154v1    C 0 C 0
s cebCap1.NW_016107543v1       15035 294 -  4077172 aataaaagatgctgccaatgttttgtagaaaaaaaaaaacacttatacactgttggtgagactgcacattagtttaaccattgtggaaagcagttttgggatctctcaaagaacttacaattattatttgacccagcaatccaatta----------ttgggtaaatacccaaaggaatataaattgctctaccataaagacatatgcatgcc-tatgtccattgcagcgctactgacaatagcaaagacatggaatcaac-taaaatgtgcatcaaaagtagactggataaagaaaatgtgttac
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        8695 293 -    94492 aataaaagatgctgccaacgttttgtag-gaaaaaaaatcacttacacagtgttggtgagactgcacattagtttaaccattgtggaaagcagttttgggatctctcaaagaacttacaattattatttggcccaacaatccaatta----------ttggatatatacccaaaggaatataaattgttctaccataaagatatatgcatgca-tatgtccattgaagcactactcacaatagcaaagatatagaatcaac-taaaatttgcatcaaaagtagactggataaagaaaatgtgttac
i aotNan1.NW_018505111v1    C 0 C 0
e canFam3.chr9              39589624 2106 - 61074082 T
e dasNov3.JH570468            560186  34 -   852752 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e saiBol1.JH378271           1867311 12313 +  3513951 I
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=1480130.000000
s hg38.chr17_JH159148v1_alt    49873 209 +    88070 atatacaccatggaatactatacag----aaaaaaaaggaaaaaaagaacaagatgatgtcctttgcagcaacacagatggagccggaggccattatcccaagggaactaacacaggaacagaaaaccaaataacacatgttctcacataagagtgggggccaaacattgaatacatatgaacacaaagaagggaacaacagacactggaact
s panTro5.chr17             16360934 209 + 83181570 atatacaccatggaatactatacag----aaaaaaaaggaaaaaaagaacaagatgatgtcctttgcagcaacgcagatggagccggaggccattatcccaagggaactaacacaggaacagaaaaccaaataccacatgttctcacataagagtgggggccaaacattgaatacatatgaacacaaacaagggaacaacagacactggaact
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16265861 207 + 83442489 atatacaccatggaatactatacag----aaaaaaa--ggaaaaaagaacaagatgatgtcctttgcagcaacgcagatggagccggaggccattatcccaagggaactaacacaggaacagaaaaccaaataccacatgttctcacataagactgggggccaaacattgaatacatatgaacacaaagaagggaacaacagacactggaact
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4112817 209 +  4267968 atatacaccatggaatactatacag----aaaaaaaaggaaaaaaagaacaaaatgatgtcctttgcagcagcacagatggagccggaggccattatcccaagggaactaacacaggaacagaaaaccaaataccacatgttctcacataagagtgggggccaaacattgaatacatatgaacacaaagaagggaacaacagacactggaact
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2100997 208 -  2193130 atatacaccatagaacactatacag----aaaaaaa-ggaaaaaatgaacaaggtgatgtcctttgcagcaacacagatggagctggaggccattatcccaagggaactgacacaggaacagaaaaccaaataccacatgttctcacataagagtgggggccaaacatcgaatacatatgaacacaaagaagggaacaacagacactggaact
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28057952 213 - 80997621 atatacaccataaaatactatacagaaaaaaaaaaaaaagaaaaaagaacaagatgatgtcctttgcagcaacacggatggagctggaggccattatcccaagggaactaacccaggaacagaaaaccaaataccacatgtcctcacttaagagtgggagccaaacattgaatgcatatgaacacaaagacaggaacaacagacactggaact
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2114463 213 + 10377808 atatacaccataaaatactatacagaaaaaaaaaaaaaagaaaaaagaacaagatgatgtcctttgcagcaacacggatggagctggaggccattatcccaagggaactaacccaggaacagaaaaccaaataccacatgttctcacataagagtgggagccaaacattgaatgcatatgaacacaaagacaggaacaacagacactggaact
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2005841 211 -  8458610 atatacaccataaaatactatacag--aaaaaaaaaaaagaaaaaagaacaagatgatgtcctttgcaacaacacggatggagctggaggccattatcccaagggaactaacccaggaacagaaaaccaaataccacatgttctcacataagagtgggagccaaacattgaatgcatatgcacacaaagacaggaacaacagatactggaact
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64944820 204 + 75148670 atatacaccataaaatactatacag-aaaaaaaaaaaaagaaaaaagaacaagatgatgtc--------caacacagatggagctggaggccattatcccaagggaactaacccaggaacagaaaaccaaataccacatgttctcacataagagtaggagccaaacattgaatgcatatgaacacaaagacaggaacaacagacactggaact
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2196929 208 +  4244037 atatacaccataaaatactatacag-----aaaaaaaaagaaaaaagaacaagatgatgtcctttgcagcaacacagatggagctggaggccattatcccaagggaactaacccaggaacagaaaaccaaataccacatgttctcacataagagtgggagccaaacattgaatgcatatgcacacaaagacaggaacaacagacactggaact
i manLeu1.NW_012106252v1    C 0 T 6212
s colAng1.NW_012122154v1     2209930 210 +  4569836 atatacaccataaaatgctatacag---aaaaagaaaaagaaaaaagaacaagatgatgtcctttgcagaaacacagatggagctggaggccattatcccaagggaactaacccaggaacagaaaaccaaataccacatgttctcacgtaagagtgggagccagacattgaatacatatgaacacaaagacaggagcaacagacactggaact
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1879624 203 +  3513951 atatacccaaaggaatgctatacag----------acattaaaaaagaatgagatcgtatcctttgcagcaacacagatggagctggaggccattatcccaagggaactaacacaggaatataaaaccaaaaaccacatgttctcacttaacagtgggagccaaacattgaatgcatatgaacacaaagaggggaaaaacagacactgggact
i saiBol1.JH378271          I 12313 C 0
s cebCap1.NW_016107543v1       15329 201 -  4077172 atatacagcatagaatactatacag----------acattaaaaaagaacaagatcatgtcctttgcagcaacacagttggagctggaggccgttatcccaagggaactaacacaggaacataaaaccaaaaaccacatgttctcacttg--agtgggagccaaacattgaatacatatgaacacaaagaggggaacaacagacactgggact
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        8988 203 -    94492 atatacagcatagaatactatacag----------acattaaaaaagaacgagatcacgtcctttgcagcaacacagatggagctggaggcctttatcccaagggaactaacacaggaacataaaaccaaaaaccacatgttctcacttaagcgtgggagccaaacattgaatacatatgaacataaagaggggaacaacagacactgggact
i aotNan1.NW_018505111v1    C 0 C 0
e canFam3.chr9              39589624 2106 - 61074082 T
e dasNov3.JH570468            560186  34 -   852752 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=313647.000000
s hg38.chr17_JH159148v1_alt    50082 46 +    88070 tacctgtgggtggactgtgggaggagaatgagaatcaaaaaactgc
s panTro5.chr17             16361143 46 + 83181570 tacctgtgggtggactgtgggaggagaatgagaatcaaaaaactgc
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16266068 46 + 83442489 tacctgtgggtggactgtgggaggagaatgagaatcaaaaaactgc
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4113026 45 +  4267968 tacctgtgggtggactgtgggaggagaatgagaat-aaaaaactgc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2101205 45 -  2193130 tacctgtgggtggactgtgggaggagaatgaggat-caaaaactgc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28058165 46 - 80997621 tacctgtgggtgaagtgtgggaggaggacgaggatcaaaaaactgc
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2114676 46 + 10377808 tacctgtgggtgaagtgtgggaggaggacgaggatcaaaaaactgc
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2006052 46 -  8458610 tacctgtgggtgaagtgtgggaggaggacgaggatcaagaaactgc
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64945024 46 + 75148670 tacctgtgggggaagtgtgggaggaggacgaggatcaaaaaactgc
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2190925 46 +  4244037 tacctgtgggtgaagtgtgggaggaggacgaggatcaaaaaactgc
i manLeu1.NW_012106252v1    T 6212 C 0
s colAng1.NW_012122154v1     2210140 46 +  4569836 tacctgtgggtgaagtgtgggaggaggatgaggatcaaaaaactgc
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1879827 46 +  3513951 tatttgtggctggagggtgggaggagaatgagaatcaaaaaactgg
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       15530 46 -  4077172 tatttgtgggtggagggtgggaggagaatgagaatcaaaaaactgg
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1        9191 46 -    94492 tatttgtgggtggagagtgggaggaaactgggaatcaaaaaactgg
i aotNan1.NW_018505111v1    C 0 C 0
e canFam3.chr9              39589624 2106 - 61074082 T
e dasNov3.JH570468            560186 34 -   852752 I
e otoGar3.GL873537          22862056 5332 + 28711273 I
e rheMac8.chr16             30139106 31425 - 77216781 I

a score=1059319.000000
s hg38.chr17_JH159148v1_alt           50128 127 +    88070 ctatcaggtattatgcttattacctgggtgaagaactaatctgtacaccaaaccctgcaacacacaatttaactataaaataacccggcacacgtacccctgaaccttaaaaaaaggttaaaaaaTT
s panTro5.chr17                    16361189 127 + 83181570 ctatcaggtattatgcttattacctgggtgaaaaactattctgtacaccaaaccctgcaacacacaatttaactataaaataaaccggcacacgtacccctgaaccttaaaaaaaggttaaaaaaTT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16266114 127 + 83442489 ctatcaggtattatgcttattacctgggtgaaaaactattctgtacaccaaaccctgccacacacaatttaactataaaatacaccggcacacgtacccctgaaccttaaaaaaaggttaaaaaaTT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4113071 127 +  4267968 ctatcaggtactatgcttattacctgggtgaaaaactaatctgtacaccaaaccctgcaacacacaatttaactataaaataaactggcacacgtacccctgaaccttaaaaaaaggttaaaaaaTT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2101250 126 -  2193130 ctatcaggtgttatgcttcttacctgggtgaaaaaccaatctgtacaccaaaccctgcaacacacaatttaactataaaataaaccagcacacgtacccctggaccttaaaaaaa-gttaaaaaaTT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28058211 127 - 80997621 ctctctggtattatgcttattatctgggtgacaaaataatctgtacaccaaaccctgcaacacacaatttaactatgaaataaactggcacacatacccctgaaccttaaaaaaatgctaaaaaaTT
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2114722 127 + 10377808 ctctctggtattatgcttattatctgggtgacaaaataatctgtacaccaaaccctgcaacacacaatttaactatgaaataaactggcacacatacccctgaaccttaaaaaaatgctaaaaaaTT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2006098 127 -  8458610 ctctctggtattatgcttattatctgggtgacaaaataatctgtacaccaaaccctgcaacacacaatttaactataaaataaactggcacacgtacccctgaaccttaaaaaaatgttaaaaaaTT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64945070 127 + 75148670 ctctctggtattatgcttattatctgggtgacgaaatcatctgtacaccaaaccctgcaacgcacaatttaactataaaataaaccggcgcacgtacccctgaaccttaaaaaaatgttaaaaCATT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2190971 127 +  4244037 ctctctggtattatgcttattatctgggtgacaaaataatctgtaccccaaaccctgcaacacacaatttaactataaaataaactggcacacgtacccctgaaccttacaaaaatgttaaaaaaTT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2210186 126 +  4569836 ctctctggtattatgcttattatctgggtgacaaaataatctgtacaccaaaccctgcaacacacaatttaactacaaaataaactagcacacgtacccctgaaccttaaaaaaa-gttaaaaaaTT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random      712 126 -    12755 ctcttgggtattatgcttattatctaggtgacaaaataatctgtacaccaaaccctgcaacacacaatttaactataaaataaacctgcacacatacccctgaaccttaaaaaga-gttaaaaaTTT
i calJac3.chr5_ACFV01180105_random N 0 C 0
s saiBol1.JH378271                  1879873 126 +  3513951 ttcttgggtattatgcttattatctaggtgacaaagtaatctgtacaccaaaccctgcaacacacaatttaactataaaataaacctgcacacatacccctgaaccttaaaaaaa-gttaaaaaTTC
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              15576 126 -  4077172 ctcttgggtattatgcttattatctaggtgacaaaataatctgtacaccaaaccctgcaacacacaatttaactataaaataaacctgcacacatacccctgaaccttaaaaaaa-gttaaaaaTTC
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1               9237 126 -    94492 ctcttgggtattatgcttattatctaggtgacaaaataatctgtacaccaaaccctgcaacacacaatttaactataaaataaacctgcacgcacacccctgaaccttaaaaaaa-gttaaacaaTT
i aotNan1.NW_018505111v1           C 0 C 0
e canFam3.chr9                     39589624 2106 - 61074082 T
e dasNov3.JH570468                   560186  34 -   852752 I
e otoGar3.GL873537                 22862056 5332 + 28711273 I
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=20354.000000
s hg38.chr17_JH159148v1_alt           50255 4 +    88070 TCTT
s panTro5.chr17                    16361316 4 + 83181570 TCTT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16266241 4 + 83442489 TCTT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4113198 4 +  4267968 TCTC
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2101376 4 -  2193130 TCTC
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28058338 4 - 80997621 TATC
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2114849 4 + 10377808 TATC
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2006225 4 -  8458610 TATC
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64945197 4 + 75148670 TATT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2191098 4 +  4244037 TATT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2210312 4 +  4569836 TATT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random      838 3 -    12755 -CTT
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1879999 4 +  3513951 ACTT
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              15702 4 -  4077172 TCTT
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1               9363 4 -    94492 TCTT
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     21520514 4 + 61074082 TCTT
i canFam3.chr9                     I 120 C 0
e dasNov3.JH570468                   560186 34 -   852752 I
e otoGar3.GL873537                 22862056 5332 + 28711273 I
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=1518199.000000
s hg38.chr17_JH159148v1_alt           50259 176 +    88070 TGATGCACGTGAATTGAATGATTGGCTGGTATAGGCC---------AATAGGA----TCCCTGCATTCATGACAGCTGCTAAATGCAGACCCTGCTGCTGTATCATGTAGCTGTTGCTCACTGACGGCTGGGCAATTAATTTGGGAAGACTTTTGTGAACTGAAATGTTATCTCTTGCCAAATAC-TAGA
s panTro5.chr17                    16361320 176 + 83181570 TGATGCACGTGAATTGAATGATTGGCTGGTATAGGCC---------AATAGGA----TCCCTGCATTCATGACAGCTGCTAAATGCAGACCCTGCTGCTGTATCATGTAGCTGTTGCTCACTGACGGGTGGGCAATTAATTTGGGAAGACTTTTGTGAACTGAAATGTTATCTCTTGCCAAATAC-TAGA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16266245 176 + 83442489 TGATGCACGTGAATTGAATGATTGGCTGGTATAGGCC---------AATAGGA----TCCCTGCATTCATGACAGCTGCTAAATGCAGACCCTGCTGCTGTATCATGTAGCTGTTGCTCACTGACGGGTGGGCAATTAATTTGGGAAGACTTTTGTGAACTGAAATGTTATCTCTTGCCAAATAC-TAGA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4113202 176 +  4267968 TGATGCACGTGAATTGAATGATTGGCTGGTATAGGCC---------AATAGGA----TCCCTGCATTCATGACAGCTGCTAAATGAAGACCCTGCCGCTGTATCATGTAGCTGTTGCTCACTGATGGGTGGGCAATTAATTTGGGAAGACTTTTGTGAACTGAAATGTTATCTCTTGCCAAATAC-TAGA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2101380 176 -  2193130 TGATGCACGTGAATTGAATGATTGGCTGGTATAGGCC---------AATAGGA----TCCCTGCATTCATGACAGCTGCTAAATGCAGACCCTGCTGCTGTATCATGTAGCTGTTGCTCACTGACTGGTGGGCAATTAATTTGGGAAGACTTTTGTGAACCCAAATGTTATCTCTTGCCAAATAC-TAGA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28058342 176 - 80997621 TGATGCAGGTGAATTGAATGATTGGCTGGTATAGGCC---------AATAGGA----TCCCCACATTCAGGACAGCTGCTAAATGCAGCCCTTGCTGCTGTACCATGTAGCTGTTGCTCACTGATGCGTGGGCAATTAATTTGGGAAGACTTTTGTGAACGAAAATGTTATCTCTTGCCAAACAC-TAGA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2114853 176 + 10377808 TGATGCAGGTGAATTGAATGATTGGCTGGTATAGGCC---------AATAGGA----TCCCCACATTCAGGACAGCTGCTAAATGCAGCCCTTGCTGCTGTACCATGTAGCTGTTGCTCACTGATGCGTGGGCAATTAATTTGGGAAGACTTTTGTGAACGAAAATGTTATCTCTTGCCAAACAC-TAGA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2006229 176 -  8458610 TGATGCAGGTGAATTGAATGATTGGCTGGTATAGGCC---------AATAGGA----TCCCCACATTCAGGACAGCTGTTAAATGCAGCCCTTGCTGCTGTACCATGTAGCTGTTGCTCACTGATGGGTGGGCAATTAATTTGGGAAGACTTTTGTGAACCAAAATGTTATCTCTTGCCAAACAC-TAGA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64945201 176 + 75148670 TGATGCAGGTGAATTGAACGATTGGCTGGTATAGGCC---------AATAGGA----TCCCCACATTCAGGACAGCTGCTAAATGCAGCCCTTGCTGCTGTACCATGTAGCTGTGGCTCACTGATGGGTGGGCAATTAATTTGGGAAGACTTTTGTGAACCAAAATATTACCTCTTGCCAAACAC-TAGA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2191102 170 +  4244037 TGATGCAGGTGAATTGAATGATTGGCTGGTATAGGCC---------AATAGGA----TCCCCACATTCAGGACAGCTGCTAAATGCAGCCCTTGCTGCTGTACCA------TGTTGCTCACTGATGGGTGGGCAATTAATTTGGGAAGACTTTTGTGAACCAAAATGTTATCTCTTGCCAAACAC-TGGA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2210316 176 +  4569836 TGATGCAGGTGAATTGAATGATTGGCTGGTATAGGCC---------AATAGGA----TCCCTGCATTCAGGACAGCTGCTAAATGCAGCCCTTGCTGCTGTACCATGTAGCTGTTGCTCACTGATGGGTGGGCAATTAATTTGGGAAGACTTTTGTGAACCGAAATGTTATCTCTTGCCAAACAC-TAGA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random      841 183 -    12755 TAATGCAGGTGAATTGAATGATTGGCTGGTATAGGCT-GAGACAA-AATAAAA----TCCCTGCATTCAGGGCAGCTGCTAAATGCAGCCCCTACTGCTGTACCATGTAGCTGTTCCTCATTGACCTGTGGGAAACTGATTTGGGAAGACCTTTGTGAACTGAAATGTTGTCTCTTGCCAAATAT-TAGA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1880003 183 +  3513951 TAATGCAGGTGAATTGAACGATTGGCTGGTATAGGCT-GAGACAA-AGTAGAA----TCCTTGCATTCAGGGCAGCTGCTAAATGCAGCCCCTGCTGCTGTACCATGTAGCTGTTCCTCATTGACCTGTGGGAAACTAATTTGGGAAGACCTTTGTGAACCAAAATGTTGTCTCTTGCCAAATAC-TAGA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              15706 183 -  4077172 TAATGCAGGCAAATTGAATGATTGGCTGGTATTGGCT-GAGACAA-AATAGAA----TCCTTGCATTCAGGGCAGCTGCTAAATGCAGCCCCTGCTGCTGTACCATGTAGCTGTTCCTCATTGACCTGTGGGAAACTAATTTGGGAAGACCTTTGTGAACCAAAATGTTGTCTCTTGCCAAATAC-TAGA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1               9367 183 -    94492 TAATGCAGGTGAATTGAATGATTGGCTGGTATAGACT-GAGACAA-AATAGAA----TCCCTGCATTCAGGGCAGCTGCTAAATGCAGCCCCTGCTGCTGTACCGTGTAGCTGTTCCTCATTGACCTGTGGGAAACTAATTTGGGAAGACCTTTGTGAACTGAAATATTGTCTCTTGCCAAATAC-TACA
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     21520518 171 + 61074082 TGATGC-GGAGGGGTGCATGAGGGACTGGATGGGGCCCAAGGCAACCAAAGGG----CTCCTGTGCACAGGAACTCTAC--AAGGAAGGGCCCACTGCCCTCACACAGGGATTCTGGTCACTGAGGTGTAGGACACAA---TGTCTACAACTTTGT---CCCAGATGTTCC------CCACATATGTAGG
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   560220 178 -   852752 TGATGCCAGTGAATGGCATCAGTGCATGGAAAGAGCCTGAGA----CAAAGGATGTCTCCCTGTGCT-ACGGAATTTCTTACACATAGCCATTGATACCTT-TCATGTCATTCATACTCACTGAGTTGTGGGAAACTGATTTGGAAAGAGCTTTGTACATGGAAACATTAACTGATATCTAACA------
i dasNov3.JH570468                 I 34 C 0
e otoGar3.GL873537                 22862056 5332 + 28711273 I
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=1519474.000000
s hg38.chr17_JH159148v1_alt           50435 169 +    88070 GATTA--TTATTTCCATTGTTAAAT--AA---ACTCAAGTGCATAACTTGCTAGTGCTGAATC-C-CAATGTCATTACTACTT--TATTGAGAGTTAAATGTAAGTGTCTTTGGACAGAAAGAGAAGACGCAACCTTGCATCAGAGTCTGTCCACTATTAGCTACATAACATCACACATT
s panTro5.chr17                    16361496 169 + 83181570 GATTA--TTATTTCCATTGTTAAAT--AA---ACTCAAGTGCATGACTTGCTAGTGCTGAGTC-C-CAATGTCATTTCTACTT--TATTGAGAGTTAAATGTAAGTGTCTTTGGGCAGAAAGAGAAGACGCAACCTTGCATCAGAGTCTGTCCACTATTAGCTACATAACATCACACATT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16266421 169 + 83442489 GATTA--TTATTTCCATTGTTAAAT--AA---ACTCAAGTGCATGACTTGCTAGTGCTGAGTC-C-CAATGTCATTTCTACTT--TATTGAGAGTTAAATGTAAGTGTCTTTGGGCAGAAAGAGAAGACGCAACCTTGCATCAGAGTCTGTCCACTATTAGCTACATAACATCACACATT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4113378 168 +  4267968 GATTA--TTATTTCCATTGTTAAAT--AA---ACTCAAGTGCATAACTTGCTAGTGCTGAGTC-C-CAATGTCATTTCTACTT--TATTGAGAGTTAAATGT-AGTGTCTTTGGACAGAAAGAGAAGACGCAACCTTGCATCAGAGTCTGTCCACTATTAGCTACATAACATCACACATT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2101556 169 -  2193130 GATTA--TTCTTTCCACTGTTAAAT--AA---ACTCAAGTGCATAACTTGCTAGTGCTAAGTC-C-CAATGTCATTTCTACTT--TATTGAGAGTTTAATGTAAGTGTCTTTGGACAGAAAGAGAAGACGCAACCTTGCATCAGAGTCTGTCCACTATTAGCTACATAACGTCACACATT
i nomLeu3.chrUn_GL397460_1         C 0 I 239
s macFas5.chr16                    28058518 169 - 80997621 GATTA--TTCTTTCCATTGTTAAAT--AA---ACTCAAGTGCATAACTTGCTAGTGCTGAGTC-C-CAATGTCATTTCTACTT--TATTGAGAGTTAATTGTAAGTGTCTTTGGACAGAAAGAGAAGATGCAATCTTGCATCAGAGTCTGTCCACTGTTAGCTACATAACATCACACATT
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2115029 169 + 10377808 GATTA--TTCTTTCCATTGTTAAAT--AA---ACTCAAGTGCATAACTTGCTAGTGCTGAGTC-C-CAATGTCATTTCTACTT--TATTGAGAGTTAATTGTAAGTGTCTTTGGACAGAAAGAGAAGATGCAATCTTGCATCAGAGTCTGTCCACTGTTAGCTACATAACATCACACATT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2006405 169 -  8458610 GATTA--TTCTTTCCATTGTTAAAT--AA---ACTCAAGTGCATAACTTGCTAGTGCTGAGTC-C-CAATGTCATTTCTACTT--TATTGAGAGTTAATTGTAAGTGTCTTTGGACAGAAAGAGAAGATGCAATCTTGCATCAGAGTCTGTCCACTGTTAGCTACATAACATCACACATT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64945377 169 + 75148670 GATTA--TTCTTTCCATTGTTAAAT--AA---ACTCAAGTGCATAACTTGCTAGTGCTGAGTC-C-CAATGTCATTTCTACTT--TATTGAGAGTTAATTGTAAGTGTCTTTGGACAGAAAGAGAAGATGCAGTCTTGCATCAGAGTCTGTCCACTGTTAGCTACATAACATCACACATT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2191272 169 +  4244037 GATTA--TTCTTTCCATTGCTAAAT--AA---ACTCAAGTGTGTAACTTGCTAGTGCTGAGTC-C-CAATGTCATTTCTACTT--TATTGAGAGTTAATTGTAAGTGTCTTTGGGCAGAAAGAGAAAATGCAATCTTGCATCAGAGTCTGTCCACTGTTAGCTACATAACATCACACATT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2210492 169 +  4569836 GATTA--TTCTTTCCATTGTTAAAT--AA---ACTCAAGTGCATAACTTGCTAGTGCTGAGTC-C-CAATGTCGTTTCTACTT--TATTGAGAGTTAATTGTAAGTGTCTTTGGACAGAAAGAGAAGAAGCAATCTTGCATCAGAGTCTGTCCACTGTTAGCTACATAACATCACACATT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     1024 160 -    12755 GGTTG-TTTTTTTCCCTTGTGAGGT--AA---ACTCAAGTGGCTAACTTGCTACTGC-----------AAGTCCTTTCTACTT--TATTGAGAGTTAAATGTAAGTG-CTTTGGACAGAAAGAAAAGACGCAACCTTGGTTCCAAGTCTGTCCACTATTAGCTACGTAACATCACACATT
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1880186 169 +  3513951 GGTCG-TTTTTTTCCCTTGTGAGGT--AA---ACTCAAGTGCCTAACTTGCTAGTGCTGGGTT-C-CAATGTCATTCCTACTT--TATTGAGAGTTAAATGTAAGGG-CTTTGGACAGAAAGAGAAGACGCAACCTTGGTTCTGAGTCTGTCCACTGTTAGCTACATAACATCACACATT
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              15889 169 -  4077172 GGTTG-TTTTTTTCCCTT-TGAGGT--AA---ACTCAAGTGCCTAACTTGCTAGTGCTGAGTT-C-CAGTGTCATTTCTACTT--TATTGAGAGTTAAATGTAAGTGTCTTTGGACAGAAAGAGAAGACGCAAACTTGGTTCCGAGTCTGTCCACTATTAGCTACATAACATCACACATT
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1               9550 170 -    94492 GGTTGTTTTTTTTCCCTTGTGAGGT--AA---ACTCAAGTGCCTAACTTGCTAGTGCTGAGTT-C-CACTGTCATTTCTACTT--TATTGAGAGTTAAATGTAAGTG-CTTTGGACAGAAAGAGAAGATGCAACCTTGGTTCCGATTCTGTCCACTATTAGCTACATAACATCACACATT
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22867388 165 + 28711273 gattt--ttgttgttgttgTT-----------GCTCAAGTGCACAGCTCACCAGTTCTCATTCTC-CAGTAGCAGTTCTAGTT-GCTTTGAGATGGACATGCAGGTGCCCTTGAGCAGACACCGCAGACCCAGTCCTGGATGTCAGTGTGACTATTATTCACTACAAGACATTATGCTAT
i otoGar3.GL873537                 I 5332 C 0
s canFam3.chr9                     21520689 173 + 61074082 GGAGA--CCAGTTCCATGGTCAATG--AAGACACTCAACTGAATAGCTTGCTGGAGCTCAGGG-C-CAGGGTGTTTCCTAACTGGTCTGCAGATGGGAATGTGAGCGCCCTTCAGCCAGGGCAGGAGATACAGCCTGGCATCTGATTCTGCCC-CTGTCAGCTCTGTGACATGATGTCAT
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   560398 172 -   852752 -GTTA--TTATTTCTTTGCCAAAATGGAA---TTTAAAAAATCTATCTTACTAGAGCTCGGTC-TGTAGCACCATTTCTCATT-GCCTTGAGATGCAAGTGTAAGAGACCTCCACCAGAAACGGAAGACCCAGTTCTTGATCTAAGTTGGTGCATTTCTACATACATGACTTTACACAAG
i dasNov3.JH570468                 C 0 C 0
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=1435973.000000
s hg38.chr17_JH159148v1_alt           50604 163 +    88070 AAAACtttcccagttg--gaaaatggaggcaataatacatgactgtctgttttgagaatcaaattgggtaatacatatGGTATGTG--ATATATGTGTAAATC-CC-ATATCAGGAATGTT-TTCAAATAAAACA-AATCACCATATGGTATGAATAATAGTTCCAAATTT
s panTro5.chr17                    16361665 163 + 83181570 AAaattttcccagttg--gaaaatggaggcaataatacatgactgtctgttttgagaatcaaattgggtaatacatatGGTATGTG--ATATATGTGTAAATC-CC-ATATCAGGAATGTT-TTCAAATAAAGCA-AATCACCATATGGGATGAATGATAGTTCCAAATTT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16266590 163 + 83442489 AAaattttcccagttg--gaaaatggaggcaataatacatgactgtctgttttgagaatcaaattgggtaatacatatGGTATGTG--ATATATGTGTAAATC-CC-ATATCAGGAATGTT-TTCAAATAAAGCA-AATCACCATATGGGATGAATGATAGTTCCAAATTT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4113546 163 +  4267968 AAaattttcccatttg--gaaaatggaggcaataatacatgactgtctgttttgagaatcaaattgggtaatacatatgGTATGTG--ATATATGTGTAAATC-CC-ATATCAGGAATGTT-TTCAAATAAAACA-AATCACCATATGGGATGAATAATAGTTCCAAATTT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2101964 163 -  2193130 aaaAttttcccagttg--gaaaatggaggcaataatacatgactgtctgttttgagaatcaaattgggtaatacatatagtatgtg--agagATGTGTAAATC-CC-GTATCAGGAACGTT-TTCAAATAAAACA-AATCACCATATGGGATGAATAATCGTTCCAAATTT
i nomLeu3.chrUn_GL397460_1         I 239 C 0
s macFas5.chr16                    28058687 163 - 80997621 AAaattttcccagttg--gaaaatggaggcaataatacactactgtctgttttgagaatcaaattaggtaatacatACAGTAGGTG--ATATATGCGTAAATC-CC-ATATCAGGAATGCT-TTCAAATAAAACA-AAGCACCATATGTGATGAAGAATGGTTCCGAATTT
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2115198 163 + 10377808 AAAATTTTCCCAGTTG--GAAAATGGAGGCAATAATACACTACTGTCTGTTTTGAGAATCAAATTGGGTAATACATACAGTAGGTG--ATATATGCGTAAATC-CC-ATATCAGGAATGCT-TTCAAATAAAACA-AAGCACCATATGTGATGAAGAATGGTTCCGAATTT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2006574 163 -  8458610 AAaattttcccagttg--gaaaatggaggcaataatacactactgtctgttttgagaatcaaattgggtaatacatataGTAGGTG--ATACATGCATGAATC-CC-ATATCAGGAATGCT-TTCAAATAACACA-AAGCACCATATGTGATGAAGAATGGTTCTGAATTT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64945546 163 + 75148670 AAaattttcccagttg--gaaaatggaggcaataatacactactgtccgttttgagaatcaaattgggtaatacatataGTAGGTG--ATACATGCGTAAATC-CC-ATATCAGGAATGCT-TTCAAATAAAACA-AAGCACCATATGTGATGAAGAATGGTTCCGAATTT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2191441 163 +  4244037 AAaattttcccagttg--gaaaatggaggcaataatacactactgtctgttttgagaatcaaattgggtaatatatataGTAGGTG--ATACATGCGTGAATC-CC-ATATCAGGAATGCT-TTCAAATAAAACA-AAGCACCATATGTGATGAAGAATGGTTCTGAATTT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2210661 163 +  4569836 AAaatttttccagttg--gaaaatggaggcaataatacactactgtctgttttgagaatcaaattgggtaatacGCACAGTAGGTG--ATATATGTGTAAATC-CC-ATATTAGGAATGCT-TTCAAATAAAACA-AAGCACCATACGGGATGAAGAATGGTTCCAAATTT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     1184 163 -    12755 AAATTTTTCGCAGTTG--GAAAATGGAGGCAATACAACATGACTGTCTATTTTGAGAATCAAATTGGGTAATACATATAGTGTGTG--ATGTGTGTGTAAATC-CC-ATATCAGGAATGCT-TTGAAAGAATCCA-AGACACCATATGAGATGAAGAATGGTTCTGAATTC
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1880355 163 +  3513951 AAAATTTTCGCAGTTG--GAAGATGGAGGCAATAAAACATGACTGTCTATTTTGAGAATCAAATTGGGTAATACATATAGTGTGTG--ATGTGTGTGTAAACT-CC-GTGTCAGGAATGCT-TTAAAATAATACA-AGACACCATATGAGATGAAGAATGGTTCTGAATTT
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              16058 159 -  4077172 AAAATGTTCACAGTTG--GAAAATGGAGGCAATAAAACATGA----CTATTTTGAGAATCAAATTGGGTAACACATATAGTGTGTG--ATGTGTGTATAAATC-CC-ATGTCAGGAATGCT-TTAAAATAATACA-AGACACCATATGAGACAAAGAATGGTTCTGAATTT
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1               9720 163 -    94492 AAaattttcacagttg--gaaaatggaggcaataaaacatgactgtttattttgagaatcaaattgggtaatacatataGTGTGAG--ATGTGTGTGTAAATC-CC-ATATCAGGAATGCT-TAAAAATAATACA-AGACACCATATGAGATGAAGAATGGTTCCGAATTT
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22867553 165 + 28711273 GAAGTTTTCTCATCTGAAAAAAATGATATTAACAATACAAGGGTAACTGTATTGAAAAGAAAAATGGATAATATATATGGCATGCC--ATACGTATACAAGTTGCT-GTATCAGAAAGAAG-TAC-AATGGAACA-AAACACAACACGAGATGAATAAAGGCTCACAATTT
i otoGar3.GL873537                 C 0 I 7279
s canFam3.chr9                     21520862 160 + 61074082 GGGATTTTATCATCT---CCAAGTGGAGATACAAATTTGTGGGGGATTATA-GGAGGCTCTAAATGGATAATGCACGTGGTATGGA--ACTTGTGTATACATCGTG-ATGTTGTGAGCACT----GAAGAAGACATGGACACCATATGGGATGCAGAATGATACACGGTTT
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   560570 157 -   852752 TGAATATTCA-AATCA--GAAGGGAGAGGCACTATTTACTGGATGGTTTTTATG--------GTCAGAGAATTCATAAAGTATGGGGTATGCGTATATAAATC-CCTATATCAGAAAGGCCATACAACAAAAGTG-AAACATGATATG-GATGACTGATAAGGATGAATGG
i dasNov3.JH570468                 C 0 I 6
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=3876245.000000
s hg38.chr17_JH159148v1_alt           50767 432 +    88070 ATTTATT-------------------------------------AAGAAATA---TATATGTAAG-ATCCCTGGT-TATAGGGAGATAACCC---AAAGTGATCATTAAAAGAAGGAAGCAGGATACAAGAATCATGAGTATATTGAAA-AGAAAA-----CATAGTTGTGAAGA--------------------TTCTTAATCATTTGCAGC---------------------AA------------------------------CTTAAGTTT-C---TTAAGTGA-----AGAGAATGAAGCTCTTGACTTT---TGAGTCAAAGCTGAGACCATGACTCAAAATTGAGAACACATGA-----------------AGCTGGCACATGATTCACAAGGTATAA-GAAAAAGAGAA----------------TCAGGATGAAG-------TATTCTGCCCTCCCTCAAGCTGATTCACAAGATTTTAAATATGCAGAGAATTCATAAAAATTTGGGTGAGAACATGGTTGCTGTCAGCAGT-----AAGGTAAATTAGTCCTCCAAAAGATAAGTCAGTTGAGCAGAAGGTTGTTGTGTGAAGATGG--TTGT
s panTro5.chr17                    16361828 432 + 83181570 ATTTATT-------------------------------------AAGAAATA---TATAGGTAAG-ATCCCTGGT-TATAGGGAGATAACCC---AAAGTGATCATTAAAAGAAGGAAGCAGGATACAAGAATCATGAGTATATTGAAA-AGAAAA-----CATAGTTGTGAAGA--------------------TTCTTAATCATTTGCAGC---------------------AA------------------------------CTTAAGTTT-C---TTAAGTGA-----AGAGAATGAAGCTCTTGACTTT---TGAGTCAAAGCTGAGACCATGACTCAAAATTGAGAACACATGA-----------------AGCTGGCACATGATTCACAAGGTATAA-GAAAAAGAGAA----------------TCAGGATGAAG-------TATTCTGCCCTCCCTCAAGCTGATTCACAAGATTTTAAACATGCAGAGAATTCATAAAAATTTGGGTGAGAACATGGTTGCTGTCAGCAGT-----AAGGTAAATTAGTCCTCCAAAAGGTAAGTCAGTTGAGCAGAAGGTTGTTGTGTGAAGATGG--TGGT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16266753 432 + 83442489 ATTTATT-------------------------------------AAGAAATA---TATAGGTAAG-ATCCCTGGT-TATAGGGAGATAACCC---AAAGTGATCATTAAAAGAAGGAAGCAGGATACAAGAATCATGAGTATATTGAAA-AGAAAA-----CATAGTTGTGAAGA--------------------TTCTTAATCATTTGCAGC---------------------AA------------------------------CTTAAGTTT-C---TTAAGTGA-----AGAGAATGAAGCTCTTGACTTT---TGAGTCAAAGCTGAGACCATGACTCAAAATTGAGAACACATGA-----------------AGCTGGCACATGATTCACAAGGTATAA-GAAAAAGAGAA----------------TCAGGATGAAG-------TATTCTGCCCTCCCTCAAGCTGATTCACAAGATTTTAAACATGCAGAGAATTCATAAAAATTTGGGTGAGAACATGGTTGCTGTCAGCAGT-----AAGGTAAATTAGTCCTCCAAAAGGTAAGTCAGTTGAGCAGAAGGTTGTTGTGTGAAGATGG--TGGT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4113709 432 +  4267968 ATTTATT-------------------------------------AAGAAATA---TATAGGTAAG-ATCCCTGGT-TATAGGGAGATAACCC---AAAGTAATCATTAAAAGAAGGAAGCAGGATACAAGAATCATGAGTATATTGAAA-AGAAAA-----CATAGTTGCGAATA--------------------TTCTTAATCATTTGAAGC---------------------AA------------------------------CTTAAGTTT-C---TTAAGTGA-----AAAGAATGAAGCTCTTGACTTT---TGAGTCAAAGCTGAGACCATGACTCAAAATTGAGAACACATGA-----------------AGCTGGCACATGATTCACAAGGTATAA-GAAAAAGAGAA----------------TCAGGATGAAG-------TATTCTGCCCTCCCTCAAGCTGATTCACAAGATTTTAGACATGCAGAGAATTCATAAAAATTTGGGTGAGAACATGGTGGCTGTCAGCAGT-----AAGGTAAATTAGTCCTCCAAAAGATAAGTCAGTTGAGCAGAAGGTTGTTGTGTGAAGATGG--TGGT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2102127 469 -  2193130 ATTTATTAAGCGAGATTCTGTCTCaaaaaaataaaaaataaaaaaagaaata---tataagtaaG-ATCCCTGGT-TATAGGGAGATAACCC---AGAGTGATAGTTAAAAGAAGGAAGGAGTATACAAGATTCATGAGTATATTGAAA-AGAAAA-----CATAGTTGTGAAGA--------------------TTCTTAATCATTTGCAGA---------------------AA------------------------------CTTAAGTTT-C---TTAAGTGA-----AGAGAATGAAGCTCTTGACTTT---TGAGTCAAAGCTGAGACCATGACTCAAAATTGAGAACACATGA-----------------AGCTGGCACATGATCCACAAGGTATAA-GAAAAAGAGAA----------------TCAGGATGAAG-------TATTCTGCCCTCCCTCAAGCTGATTCACAAGATTTTAAACATGCAGAGAATTCATTAAAATTTGGGTGAGAGCATGGTGGCTGTCAGCAGT-----AAGGTAAATTAGTCCTCCAAAAGATAAGTCAGTTGAGCAGAAGGTTGTTGTGTGAAGTTGG--TGGT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28058850 432 - 80997621 ATTTATT-------------------------------------AAGAAATA---TATAGGTAAG-ATTCCTGGT-TCTCGGGAGATAGCCC---AAAGTGATCATTAAAAGAAGGAAGGAGGATACAAGAATCATGAATATATTGAAA-AGAAAA-----CATAGTTGTGAAGA--------------------TTCTTAATCATTTGCAGA---------------------AA------------------------------CTGAAGTTT-C---TTAGGTGA-----AGAGAATGAAGCTCTTGACTTT---AGAGTCAAAGTTGAGATCATGACTCCAAATTGAGAACACACAA-----------------AGCTGGCACATGATCCACAAGGTGTAA-GAAAAAGAGAA----------------TCAGGACGAAG-------TATTCTGCCATCCCTGAAGCTGATTCACAAAATATTAAACATGCAGAGAGTTCATAAAAATGTGGGCGACAGCATGGTGGCTGTCAGCAGC-----AAAGTAAACTAGTCCCCCAAAAGATAAGTCAGTTGAGCAGAAAGTTGTTGTGAGAAGATAG--TGGT
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2115361 432 + 10377808 ATTTATT-------------------------------------AAGAAATA---TATAGGTAAG-ATTCCTGGT-TCTTGGGAGATAGCCC---AAAGTGATCATTAAAAGAAGGAAGGAGGATACAAGAATCATGAATATATTGAAA-AGAAAA-----CATAGTTGTGAAGA--------------------TTCTTAATCATTTGCAGA---------------------AA------------------------------CTTAAGTTT-C---TTAGCTGA-----GGAGAATGAAGCTCTTGACTTT---AGAGTCAAAAATGAGATTATGACTCCAAATTGAGAACACACAA-----------------AGCTGGCACATGATCCACAAGGTGTAA-GAAAAAGAGAA----------------TCAGGACGAAG-------TATTCTGCCATCCCTGAAGCTGATTCACAAAATATTAAACATGCAGAGAGTTCATAAAAATGTGGGCGACAGCATGGTGGCTGTCAGCAGC-----AAAGTAAACTAGTCCCCCAAAAGATAAGTCAGTTGAGCAGAAAGTTGTTGTGAGAAGATAG--TGGT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2006737 432 -  8458610 ATTTATT-------------------------------------AAGAAATA---TATAGGTAAG-ATTCCTGGT-TCTCGGGAGATAGCCC---AAAGTGATCATTAAAAGAAGGAAGGAGGATACAAGAATCATGAGTATATTGAAA-AGAAAA-----CATAGTTGTGAAGA--------------------TTCTTAATCATTTGCAGA---------------------AA------------------------------CTTAAGTTT-C---TTAGGTGA-----AGAGAATGAAGCTCTTGACTTT---AGAGTCAAAGTTGAGATCATGACTCCAAATTGAGAACACACAA-----------------AGCTGGCACATGATCCACAAGGTGTAA-GAAAAAGAGAA----------------TCAGGATGAAG-------TACTCTGCCGTCCCTGAAGCGGATTCACAAGATATTAAACATGCAGAGAGTTCATTAAAATGTGGGCGACAGCATGGTGGCTGTCAGCAGC-----AAAGTAAACTGGTCCCCCAAAAGATAAGTCGGTTGAGCAGAAAGTTGTTGTGTGAGGACGG--TGGT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64945709 432 + 75148670 ATTTATT-------------------------------------AAGAAATA---TATAGGTAAG-ATTCCTGGT-TCTCGGGAGATAGCCC---AAAGTGATCATTAAAAGAAGGAAGGAGGATACAAGAATCATGAGTATATTGAAA-AGAAAA-----CATAGTTGTGAAGA--------------------TTCTTAATCATTTGCAGA---------------------AA------------------------------CTTAAGTTT-C---TTAGGTGA-----AGAGAATGAAGCTCTTGACTTT---AGAGTCAAAGTTGAGATCATGACTCCAAATTGAGAACACACAA-----------------AGCTGGCACATGATCCACAAGGTATAA-GAAAAAGAGAA----------------TCAGGATGAAG-------TATTCTGCCGTCCCTGAAGCTGATTCACAAGATATTAAACATGCAGAGAGCTCATAAAAATGTGGGCGACAGCATGGTGGCTGTCAGCAGC-----AAAGTAAACTAGTCCCCCAAAAGATAAGTCAGTTGAGCAGAAAGTTGTTGTGAGAAGATAG--TGGT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2191604 432 +  4244037 ATTTATT-------------------------------------AAGAAATA---TATAGGTAAG-ATTCCTGAT-TCTCGGGAGATAGCCC---AAAGTGATCATTAAAAGAAGGAAGGAGGATACAAGAATCATGAGTATATTGAAA-AGAAAA-----CATAGTTGTGAAGA--------------------TTCTTAATCATTTGCAGA---------------------AA------------------------------CTTAAGTTT-C---TTAGGTGA-----AGAGAATGAAGCTCTTGACTTT---AGAGTCAAAGTTGAGATCATGACTCCAAATTGAGAACACACAA-----------------AGCTGGCATATGATCCACAAGGTGTAA-GAAAAAGAGAA----------------TCAGGATGAAG-------TATTCTGCCGTCCCTGAAGCTGATTCACAAGATATTAAACATGCAGAGAGTTCATAAAAATGTGGGCGACAGCATGGTGGCTGTCAGCAGC-----AAAGTAAACTGGTCCCCCAAAAGATAAGTCAGTTGAGCAGAAAGTTGTTGTGAGAAGATGG--TGGT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2210824 431 +  4569836 ATTTATT-------------------------------------AAGAAATA---TATAGGTAAG-ATTCCTGGT-TCTCGGGAGATAGCCC---AAAGTGATCATTAAAAGAAGGAAGGAGGATACAAGAATCATGAGTATATTGAAA-AGAAAA-----TATAGTTGTGAAGA--------------------TTCTTAATCATTTGCAGA---------------------AA------------------------------CTTAAGTTT-C---TTAGGTGA-----AGAGAATGAAGCTCTTGACTTT---AGAGTCAAAGTTGAGATCATGACTCCAAATTGAAAACACACAA-----------------AGCTGGCACATGATCCACAACGTGTAA-GAAAAAGAGAA----------------TCAGGATGAAA-------TATTCTG-CATCCCTGAAGCTGATTCACAAGATATTAAACATGCAGAGAGTTCATAAAAATGTGGGCGACAGCATGGTGGCTGTCAGCAGC-----ATAGTGAACTAGTCCCCCAAAAGATAAGTCAGTTGAGCAGAAAGTTGTTGTGAGAAGATGG--TGGT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     1347 431 -    12755 ATTTATT-------------------------------------GAGGAGTA---TATAGGTAAGAATCCCTGTT-TTTAGGGAGATAACCC---AAAGTGATCACTAAAAGAAGAAAGGAGGATACACGAATCATGAGTACATTGAAA-AGAAAA-----CATAATCGTGAAGA--------------------TTCTTGATCAGTTGCAGA---------------------AA------------------------------CTTAAGTTT-T---TTAGGGGA-----AGAGAATGAAGCTCTTGACTTT---AGAGTCAAAGCTGAGACCATGATTCTAAATTGGGAACACATAA-----------------AGCTGGCACATGATCCACAAGGTGTAAGGAAAAAGAGAA----------------TCAAGATGAAG-------TACTCTGACCTCCCACAAGCTGATTGACAAGATTTTAAACATGTAGAGAATTCATAAAAATGTGGACGAGAGCATGGT---TTCTGGCAGC-----AAAGTAAATTGGTCCCCCAAAAGATAAGTTGGTTGAGCAGAAAGCTGTTGTGTGAGGATAG--TGGT
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1880518 431 +  3513951 ATTTATT-------------------------------------AAGAAACA---TATAGGTAAGAATCCCTGCT-TCTAGGGAGATAACCC---AAAGTGATCACTAAAAGAAGAAAGGAGGGTACAAGAATCATGAGTACATTGAAA-AGAAAA-----CATAATTGTGAAGA--------------------TTCTTGATCAGTTGCAGA---------------------AA------------------------------CTTAAGTTT-C---TTAGGGGA-----AGAGAATGAAGCTCTTGATGTT---AGAATCAAAGCTGAAACCATGACTCTAAATTGAGAACACATGA-----------------GGCTGGCACATGAACCACAAGGCGTAAGGAAAAAGAGAA----------------TCAGGATGAAG-------TACTCTGACCTCCCACAAGCTGATTGACAAGATTTTCAACATGTAGAGAATTCATAAAAATGTGGACGAGAGCATGGT---TGCCAGCAGC-----AAAGTAAATTGGTCCACCAAAAGATAAGTTGGTTGAGCAGAGAGCTGTTGTGTGAGGATGG--TGGT
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              16217 431 -  4077172 ATTTATT-------------------------------------AAGGAATA---TACAGGTGAGAATCCCTGTT-TCTAGGGAGATAACCC---AAAGTGATCACTAAAAGAAGAAAGGAGGATACAAGAATCATGAGTACATTGAAA-AGAAAA-----CATAATTGTGAAGA--------------------TTCTTGATCAGTTGCAGA---------------------AA------------------------------CTTAAGTTT-C---TTAGGGGA-----AGAGAACGAAGCTCTTGACTTT---AGAGTCAAAGCTGAGACCATGACTCTAAATTGAGAACACATGA-----------------GGCTGGCACATGATCCACAAGGTGTAAGGAAAAAGAGAA----------------TCAGGATGAAG-------TACTCTGACCTCCCACAAGCTGATTGACAAGATTTTAAACATGTAGAGAATTCATAAAAATGTGGACGAGAGCATGGT---TGCCAGCAGC-----AAAGTAAATTGGTCCCCCAAAAGATAAGTCAGTTGAGCAGAGAGCTGTTGTGTGAGGATGG--TGGT
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1               9883 429 -    94492 ATTTATT-------------------------------------GAGGAATA---TATAGGTAAGAATCCCTGTT-TCTAGGGAGATAACCC---AAAGTGATCACTAAAAGAAGAAAGGAGGATACAAGAATCATGAGTACATTGAAA-AGAAAA-----CATAATTGTGAAGA--------------------TTCTTGATCAGTTGCAGA---------------------AA------------------------------CTTAAGTTT-C---TTAGGGGA-----AGAGAATGAAGCTCTTGACTTT---AGAGTCAAAGCTGAGACCGTGACTCTAAATTGAGAACGCATGA-----------------AGCTGGCACATGATCCACAAG--GTAAGGAAAAAGAGAA----------------TCAGGATGAAG-------TACTCTGACCTCCCACAAGCTGATTGACAAGATTTTAAACAAGTAGAGAATTCATAAAAATGTGGATGAGAGCATGGT---TGCCAGCAGC-----AAAGTAAATTGGTCCCCCAAAAGATAAGTCAGTTGAGCAGAAAGCTGTGGTGTGAGGATGG--TGGT
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22874997 429 + 28711273 ATTTATT-------------------------------------AGGAATTAAACTCCATGTAAG-------------TAGGGAGAGAATGT---AAAGTGGGCATAAAGGGTAAAGGATAGGGCACAAAAATAGTGAATTCATTGGGA-AAAATATCACTCATTATTGGGAAGAGTTCAGAGAAAAGCCATAGGTTTTTGTCTGTTTGCTGA---------------------GT------------------------------TTTGGGGCTAC---TTAGAGTG-----AAAGGATGAAGATGT--------------CCACATCTGAGAACATGACTCAAGATTAAGAACAGGCAAAATAGACCAAGAGCTGGAGCTGCCACTTG----ACAGCTACTGA-GGAGAAAAG--------------------TGGATGAAG-------TAGGCTGAC-TCCATCAAGCAGACACTTGAGACCCTTAATAACAAGACAATCCAAGGGTAGATGGATGATAGCAAGCC----------------------TAGAGGGG--CTGCATGAGCTTGGTTGGCTGA-TGCCAAGTTGAAATGTGGTGAGTGTTTGGT
i otoGar3.GL873537                 I 7279 C 0
s canFam3.chr9                     21521022 474 + 61074082 ----ATT-------------------------------------AA--AAGG---TATAGGTGAGACCTCCCCCC-TGCATGGAGGGAGCCCTTTGATGTGTTCATGCAAGGATGAGAAAAGGATACAAGGACTGTGAGGACACGGAAAGAGAAAA-----CATGAT-GCCAAGA--------------------CT-TTCATTAGTGGCAGACCTCTGTACAATAGGCATAAGGA------------------------------CTTGTGTCT-CTAATTTAGTGATACAGATAGGATGAAGATCTTGACTATGAAGGAGTCAAGGCAAAGGTCGTGATTCCAAATC-AGGATGCATGA-----------------G--TGGCACATGATCCATAAGATGAAA-GAAGAAGAGAATAATAATCCATAAGATTAAGGAAGAAGGGATAAATGGTCCACATTTCATCAAGCTTACTCATTAGCTTGTAAATAGGCAGATGAGTGACAAAAACATTGGCAATTGTATGCTGGCTTTGAGAAACGTTTGACAGTAACTTTGTTTCCCAAACAGCAATTTTTT------------TTTTTTCCGATGATGG--CTCT
i canFam3.chr9                     C 0 T 18894
s dasNov3.JH570468                   560733 463 -   852752 ATTTCTT-------------------------------------TAGAAACG---AATGCATAAG-ACCCCTTGCATCAAGGGAGGCAAGTC---AAAGTGATCATAAAAAGAAGATATCATGACACAAGAATCATGGCTATATTAATA-ATAAAA-------TGATTATGTAGA--------------------TGATGGATCAATTACAGA---------------------AACCTATCAAAAGAGTTATGGGCACTTGTTTGCTTAAGTTA-C---TTGGAGGT-----AGTGG-TGAATTTCTCGGCATC---AGAGTGAAAGCTGAGGACATTCGGACATGTCGTGAATATAAAA-----------------AG-TAACACACAATCCAGAAGACATGAGGAAGAAGGTAA----------------TCAGGGTAAAA-------GAGTCCACACTCCACCAGGCGGATTCATAAACTTTTCAACATGCTGATGAATAACT-CCATTTTATTGAGAGCATGCTGGTTGTCAGTAAGTCTAGAAAGAGATTTTGTCCCAGGAATGGTGGATCTGTTGA-TAGAAGGTTGATCTGTGCAGTTGG--TGGT
i dasNov3.JH570468                 I 6 C 0
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=313424.000000
s hg38.chr17_JH159148v1_alt           51199 28 +    88070 TCTC-TTGGGAC--TTGATCAGCAGCAAGAA
s panTro5.chr17                    16362260 28 + 83181570 TCTC-TTGGGAC--TTGATCAGCAGCAAGAA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16267185 28 + 83442489 TCTC-TTGGGAC--TTGATCAGCAGCAAGAA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114141 28 +  4267968 TCTC-TTGGGAC--TTGATCAGCAGCAAGAA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2102596 28 -  2193130 TCTC-TTGGGAC--TTGATCAGCAGCAAGAA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059282 28 - 80997621 TCTC-TTGGGAG--TTGATCAGCAGCAAGAA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2115793 28 + 10377808 TCTC-TTGGGAG--CTGATCAGCAGCAAGAA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2007169 28 -  8458610 TCTC-TTGGGAG--TTGATCAGCAGCAAGAA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64946141 28 + 75148670 TCTC-TTGGGAA--TTGATCAGCAGCAAGAA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192036 28 +  4244037 TCTC-TTGGGAG--TTGATCAGCAGCAAGAA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2211255 28 +  4569836 TCTC-TTGGCAG--TTGATCAGCAGCAAGAA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     1778 28 -    12755 TCTC-TTGGGAG--TTAATCAGCAGCAAGAA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1880949 28 +  3513951 TCTC-TTGGGAG--TTAATCACCAGCAAGAA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              16648 28 -  4077172 TCTC-TTGGGAG--TTAATTAGCAGCAAGAA
i cebCap1.NW_016107543v1           C 0 T 6142
s aotNan1.NW_018505111v1              10312 28 -    94492 TCTC-TTGGGAG--TTAATCAGCAGCAAGAA
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22875426 31 + 28711273 CTTCATTAGGAGTATTGATCAGCAGCAGGAA
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21502602 28 + 61074082 TCTA-TAGCAAG--TTGCTCAGCAGCAGCAA
i canFam3.chr9                     T 18894 C 0
s dasNov3.JH570468                   561196 27 -   852752 -TTT-TTGCAAG--TTGATCAGCAGCAGGAA
i dasNov3.JH570468                 C 0 C 0
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=30600.000000
s hg38.chr17_JH159148v1_alt           51227 2 +    88070 GG
s panTro5.chr17                    16362288 2 + 83181570 GG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16267213 2 + 83442489 GG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114169 2 +  4267968 GG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2102624 2 -  2193130 GG
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059310 2 - 80997621 GG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2115821 2 + 10377808 GG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2007197 2 -  8458610 GG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64946169 2 + 75148670 GG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192064 2 +  4244037 GG
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2211283 2 +  4569836 GG
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     1806 2 -    12755 GG
i calJac3.chr5_ACFV01180105_random C 0 I 6028
s saiBol1.JH378271                  1880977 2 +  3513951 GG
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              10534 2 -  4077172 GG
i cebCap1.NW_016107543v1           T 6142 C 0
s aotNan1.NW_018505111v1              10340 2 -    94492 GG
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22875457 2 + 28711273 GG
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21502630 2 + 61074082 GG
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   561223 2 -   852752 GG
i dasNov3.JH570468                 C 0 C 0
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=15300.000000
s hg38.chr17_JH159148v1_alt           51229 1 +    88070 C
s panTro5.chr17                    16362290 1 + 83181570 C
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16267215 1 + 83442489 C
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114171 1 +  4267968 C
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2102626 1 -  2193130 C
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059312 1 - 80997621 C
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2115823 1 + 10377808 C
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2007199 1 -  8458610 C
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64946171 1 + 75148670 C
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192066 1 +  4244037 C
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2211285 1 +  4569836 C
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     7836 1 -    12755 C
i calJac3.chr5_ACFV01180105_random I 6028 C 0
s saiBol1.JH378271                  1880979 1 +  3513951 C
i saiBol1.JH378271                 C 0 T 12401
s cebCap1.NW_016107543v1              10536 1 -  4077172 C
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              10342 1 -    94492 C
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22875459 1 + 28711273 C
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21502632 1 + 61074082 C
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   561225 1 -   852752 C
i dasNov3.JH570468                 C 0 C 0
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=267542.000000
s hg38.chr17_JH159148v1_alt           51230 21 +    88070 TGGCAGCAGCTGGACACACAG
s panTro5.chr17                    16362291 21 + 83181570 TGGCAGCAGCTGGACACACAG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16267216 21 + 83442489 TGGCAGCAGCTGGACACACAG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114172 21 +  4267968 TGGCAGCAGCTGTACACACAG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2102627 21 -  2193130 TGGCAGCAGCTGGACACACAG
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059313 21 - 80997621 TGGCAGCAGCTGGACACACAG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2115824 21 + 10377808 TGGCAGCAGCTGGACACACAG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2007200 21 -  8458610 TGGCAGCAGCTGGACACACAG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64946172 21 + 75148670 TGGCAGCAGCTGGACACACAG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192067 21 +  4244037 TGGCAGCAGCTGGACACACAG
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2211286 21 +  4569836 TGGCAGCAGCTGGACACACAG
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     7837 21 -    12755 TGGCAGCAGCTGGACACACAG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1868579 21 +  3513951 TGGCAGCAGCTGGACACACAG
i saiBol1.JH378271                 T 12401 C 0
s cebCap1.NW_016107543v1              10537 21 -  4077172 TGGCAGCAGCTGGACACACAG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              10343 21 -    94492 TGGCAGCAGGTGGTCACACAG
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22875460 14 + 28711273 TGGCAGCAGCTGGA-------
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21502633 21 + 61074082 TGGCAGCAGCTGGATCCACAG
i canFam3.chr9                     C 0 I 150
s dasNov3.JH570468                   561226 21 -   852752 TGACAGCAACTGGACACACAG
i dasNov3.JH570468                 C 0 C 0
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=690544.000000
s hg38.chr17_JH159148v1_alt           51251 60 +    88070 ------------------GTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCGGGGCGGCAGCAG
s panTro5.chr17                    16362312 60 + 83181570 ------------------GTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16267237 60 + 83442489 ------------------GTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114193 60 +  4267968 ------------------GTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAgcaggctgggcggcagcag
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2102648 60 -  2193130 ------------------GTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059334 60 - 80997621 ------------------GTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2115845 60 + 10377808 ------------------GTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2007221 60 -  8458610 ------------------GTGGGCTGGAAGCAAGTGGTCCTGCAACAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64946193 60 + 75148670 ------------------GTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192088 60 +  4244037 ------------------GTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2211307 60 +  4569836 ------------------GTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     7858 60 -    12755 ------------------GTGGGCTGGCAGCAGGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1868600 60 +  3513951 ------------------GTGGGTTGGCAGCATGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGTGGCAGCAG
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              10558 60 -  4077172 ------------------GTGGGCTGGCAGCAGGTGGTCCTGCAGCAGGTGGTCTCACAGCTGGCTGGGCGGCAGCAG
i cebCap1.NW_016107543v1           C 0 I 6058
s aotNan1.NW_018505111v1              10364 60 -    94492 ------------------GTGGGCTGGCAGCAGATGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGTAGCAG
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     21502804 60 + 61074082 ------------------GTGGGCTTGCAGCAGGTGGTCCTACAGCAGGTGGTTTGACAGCAAGTTGGGCGGCAGCAG
i canFam3.chr9                     I 150 I 3
s dasNov3.JH570468                   561247 77 -   852752 CAAAAGCTGCTGCAGTAGCTGGGGTGGCTGCACGTGTTTCTACAGCA-GTGGTCTGACAGCAGGATGGGTGGCAGCAG
i dasNov3.JH570468                 C 0 C 0
e otoGar3.GL873537                 22875474  0 + 28711273 C
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=27200.000000
s hg38.chr17_JH159148v1_alt           51311 2 +    88070 GG
s panTro5.chr17                    16362372 2 + 83181570 GG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16267297 2 + 83442489 GG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114253 2 +  4267968 gg
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2102708 2 -  2193130 GG
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059394 2 - 80997621 GG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2115905 2 + 10377808 GG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2007281 2 -  8458610 GG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64946253 2 + 75148670 GG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192148 2 +  4244037 GG
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2211367 2 +  4569836 GG
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     7918 2 -    12755 GG
i calJac3.chr5_ACFV01180105_random C 0 T 6112
s saiBol1.JH378271                  1868660 2 +  3513951 GG
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              16676 2 -  4077172 GG
i cebCap1.NW_016107543v1           I 6058 C 0
s aotNan1.NW_018505111v1              10424 2 -    94492 GG
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     21502867 2 + 61074082 GG
i canFam3.chr9                     I 3 C 0
s dasNov3.JH570468                   561324 2 -   852752 GG
i dasNov3.JH570468                 C 0 C 0
e otoGar3.GL873537                 22875474 0 + 28711273 C
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=13600.000000
s hg38.chr17_JH159148v1_alt           51313 1 +    88070 C
s panTro5.chr17                    16362374 1 + 83181570 C
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16267299 1 + 83442489 C
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114255 1 +  4267968 c
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2102710 1 -  2193130 C
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059396 1 - 80997621 C
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2115907 1 + 10377808 C
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2007283 1 -  8458610 C
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64946255 1 + 75148670 C
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192150 1 +  4244037 C
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2211369 1 +  4569836 C
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     1808 1 -    12755 C
i calJac3.chr5_ACFV01180105_random T 6112 C 0
s saiBol1.JH378271                  1868662 1 +  3513951 C
i saiBol1.JH378271                 C 0 I 12317
s cebCap1.NW_016107543v1              16678 1 -  4077172 C
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              10426 1 -    94492 C
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     21502869 1 + 61074082 C
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   561326 1 -   852752 C
i dasNov3.JH570468                 C 0 C 0
e otoGar3.GL873537                 22875474 0 + 28711273 C
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=832294.000000
s hg38.chr17_JH159148v1_alt           51314 82 +    88070 TGGCAGCAGCTGGATCCACAGCT-CTGGTTGAGGCAACCAGGCAGGCAGACAGTCGTCGGGTAGTAGCAGGTTCTTCTGCAGT
s panTro5.chr17                    16362375 82 + 83181570 TGGCAGCAGCTGGATCCACAGCT-CTGGTTGAGGCAACCAGGCAGGCAGACAGTCGTGGGGTAGTAGCAGGTTCTTCTGCAGT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16267300 82 + 83442489 TGGCAGCAGTTGGAGCCACAGCT-CTGGTTGAGGCAACCAGGCAGGCAGACAGTCGTGGGGTAGTAGCAGGTTCTTCTGCAGT
i panPan2.chr17                    C 0 I 28587
s gorGor5.CYUI01015385v1            4114256 82 +  4267968 tggcagcagctggagccacagct-caggtttaggcaaccaggcaggcagacagTCGTGGGGTAGTAGCAGGTTCTTCTGCAGT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2102711 82 -  2193130 TGGCAGCAGCTGGAGCCACAGCT-CTGGTTTAGGCAACCAGGCAGGCAGACAGTCGTGGGGTAGTAGCAGGTTCTTCTGCAGT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059397 82 - 80997621 TGACAGCAGCTGGATCCATAGCT-CTGGTTTAGGCAACCAGGCAGGCAGACACATGTGGGGTGGTAGCAGGTTCTTCTGCAGT
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2115908 82 + 10377808 TGGCAGCAGCTGGATCCATAGCT-CTGGTTTAGGCAACCAGGCAGGCAGACATATGTGGGGTGGTAGCAGGTTCTTCTGCAGT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2007284 82 -  8458610 TGGCAACAGCTGGATCCATAGCT-CTGGTCTAGGCAACCAGGCAGGCAGACACATGTGGGGTGGTAGCAGGTTCTTCTGCAGT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64946256 82 + 75148670 TGGCAGCAGCTGGATCCATAGCT-CTGATTTAGGCAACCAGGCAGGCAGACACATGTGGGGTGGTAGCAGGTTCTTCTGCAGT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192151 82 +  4244037 TGGCAGCAGCTGGATCCATAGCT-CTGGTTTAGGCAACCAGGCAGGCAGACACTTGTGGGGTGGTAGCAGGTTCTTCTGCAGT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2211370 82 +  4569836 TGGCAGCAGCTGGATCCATAGCT-CTGGTTTAGGCAACCAGGCAGGCAGACACATGTGGGGTGATAGCAGGTTCTTCTGCAGT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     1809 82 -    12755 TGGCAGCAGCTGGATCCACAGCT-CTGGTTTAGGCAACCAGGAAGGCAGACACACGTGGGGTAGTAGCAGGTTCTCGTGCAGT
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1880980 82 +  3513951 TGGCAGCAGCTGGATCCACAGCT-CTGGTTTAGGCAACCAGGCAGACAGACACATGTGGGGTGGTAGCAGGTTCTGCTGCAGT
i saiBol1.JH378271                 I 12317 C 0
s cebCap1.NW_016107543v1              16679 82 -  4077172 TGGCAGCAGCTGGATCCACAGCT-CTGGTTTAGGCAACCAGGCAGGCAGACACATGTGGGATGGTAGCAGGTTCTGCTACAGT
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              10427 82 -    94492 TGGCAGCAGCTGGATCCACAGCT-CTGGTTTAGGCAACCAGGCAGGCAGACACACGTGGGGTGGTAGCAGGTTCTCCTGCAGT
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22875474 68 + 28711273 --------------TCCACAGCC-CAGGTTCAGACAACCAGGCAGGCAGACGCATGTGGGCTGGTAGCAGGTCCTGGTGCAGT
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21502870 31 + 61074082 TGGCAGCAGCTGGACCCGCAGCCACTGG--------ACC--------------------------------------------
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   561327 67 -   852752 TGGCAGCAGCTGGATTTGCAGCT-CTGGGGTTGGCAGCCAGGCAGGCAG---------------TAGCAAGTGTGGGAGCAGT
i dasNov3.JH570468                 C 0 C 0
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=290848.000000
s hg38.chr17_JH159148v1_alt           51396 29 +    88070 ACACAGGTGCACAGGAGCTGCTCTGGCCA
s panTro5.chr17                    16362457 29 + 83181570 ACACAGGTGCACAGGAGCTGCTCTGGCCA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16295969 29 + 83442489 ACACAGGTGCACAGGAGCTGCTCTGGCCA
i panPan2.chr17                    I 28587 C 0
s gorGor5.CYUI01015385v1            4114338 29 +  4267968 ACACAGGTGCACAGGAGCTGCTCTGGCCA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2102793 29 -  2193130 ACACAGGTGCACAGGAGATGCTCTGGCCA
i nomLeu3.chrUn_GL397460_1         C 0 I 6917
s macFas5.chr16                    28059479 29 - 80997621 AGACAGGTGCACAGGAGCTGGTCTGGTCA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2115990 29 + 10377808 AGACAGGTGCACAGGAGCTGGTCTGGTCA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2007366 29 -  8458610 AGACCGGTGCACAGGAGCTGGTCTGGCCA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64946338 29 + 75148670 AGACAGGTGCACAGGAGCTGGTCTGGCCA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192233 29 +  4244037 AGACAGGTGCACAGGAGCTGGTCTGGCCA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2211452 29 +  4569836 AGACAGGTGCACAGGAGCTGGTCTGGCCA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     1891 29 -    12755 ACACAGGTGCACAGGAGCTGGTCTGGCCA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1881062 29 +  3513951 ACACAGGTGCACAGGAGCTAGTCTGGCCA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              16761 29 -  4077172 ACACAGGTGCACAGGAGCTGGTCTGGCCA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              10509 29 -    94492 ACACAGGTGCACAGGAGCTGGTCTGGCCA
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22875542 29 + 28711273 AGACGGGTGCACAGCTGCTGGGCTGGCAG
i otoGar3.GL873537                 C 0 I 15
s canFam3.chr9                     21502901 20 + 61074082 ---------CACAGCAGCTGGGCTGGCAG
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   561394 11 -   852752 -----------CAGG-------CTGGCAG
i dasNov3.JH570468                 C 0 C 0
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=253652.000000
s hg38.chr17_JH159148v1_alt           51425 30 +    88070 CAGCTGGACCCACAGCTGGTTTGGCCACAG
s panTro5.chr17                    16362486 30 + 83181570 CAGCTGGACCCACAGCTGGTTTGGCCACAG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16295998 30 + 83442489 CAGCTGGACCCACAGCTGGTTTGGCCACAG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114367 30 +  4267968 CAGCTGGACCCACAGCTGGTTTGGCCACAG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109739 30 -  2193130 CAGCTGGACCCACAGCTGGTTTGGCCACAG
i nomLeu3.chrUn_GL397460_1         I 6917 T 6947
s macFas5.chr16                    28059508 30 - 80997621 CAGCTGGACCCACAGCTGGTTTGGCCACAG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2116019 30 + 10377808 CAGCTGGACCCACAGCTGGTTTGGTCACAG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2007395 30 -  8458610 CAGCTGGACCCACAGCTGGTTTGGCCACAG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64946367 10 + 75148670 CAGCTGGACC--------------------
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192262 30 +  4244037 CAGCTGGACCCACAGTTGGTTTGGCCACAG
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2211481 30 +  4569836 CAGCTGGACCCACAGCAAGTTTGGCCACAG
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     1920 30 -    12755 CAGCTGGAGCCACAGCTGGTTTGGCCACAG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1881091 30 +  3513951 CAGCTGGACCCACAGCTGGTTTGGCCACAG
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              16790 30 -  4077172 CAGCTGGACCCACAGCAGGTGGGCTGACAG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              10538 18 -    94492 CAGCC------------GGTTTGGCCACAG
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22875586 27 + 28711273 CAAGTGGGGAGGCAGCAGGGCTGGCAG---
i otoGar3.GL873537                 I 15 C 0
s canFam3.chr9                     21502921 30 + 61074082 CAGCTGGACACACAGCATGCGGGCTTGCAG
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   561405 30 -   852752 CAGCTGGACCCACAGGAGGTTTGGCCACAA
i dasNov3.JH570468                 C 0 C 0
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=56347.000000
s hg38.chr17_JH159148v1_alt           51455 6 +    88070 CAGCTG
s panTro5.chr17                    16362516 6 + 83181570 CAGCTG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16296028 6 + 83442489 CAGCTG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114397 6 +  4267968 CAGCTG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2102822 6 -  2193130 CAGCTG
i nomLeu3.chrUn_GL397460_1         T 6947 C 0
s macFas5.chr16                    28059538 6 - 80997621 TAGCTG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2116049 6 + 10377808 TAGCTG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2007425 6 -  8458610 CAGCTG
i cerAty1.NW_012006043v1           C 0 I 5669
s manLeu1.NW_012106252v1            2192292 6 +  4244037 CAGCTG
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2211511 6 +  4569836 CAGCTG
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     1950 6 -    12755 CAGCTG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1881121 6 +  3513951 CAGCTG
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              16820 6 -  4077172 CAGGGT
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              10556 6 -    94492 CAGCTG
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22875613 6 + 28711273 CAGCTG
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21502951 6 + 61074082 CAGGTG
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   561435 6 -   852752 GAACTG
i dasNov3.JH570468                 C 0 C 0
e chlSab2.chr16                    64946377 0 + 75148670 C
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=366063.000000
s hg38.chr17_JH159148v1_alt           51461  45 +    88070 GACC---------------------------------------------------------------------------------------------------CACAGCAGATGGGCTGGCAGCAGGTTGTGCTGCAGCAGGAA
s panTro5.chr17                    16362522  45 + 83181570 GACC---------------------------------------------------------------------------------------------------CACAGCAGATGGGCTGGCAGCAGGGTGTGCTGCTGCAGGAA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16296034  45 + 83442489 AACC---------------------------------------------------------------------------------------------------CACAGCAGATGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114403  45 +  4267968 GACC---------------------------------------------------------------------------------------------------CACAGCAGGTGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2102828  45 -  2193130 GACC---------------------------------------------------------------------------------------------------CACAGCAGGTGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059544  45 - 80997621 GACC---------------------------------------------------------------------------------------------------CACAGCAGGTGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2116055  45 + 10377808 GACC---------------------------------------------------------------------------------------------------CACAGCAGGTGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013100  45 -  8458610 GACC---------------------------------------------------------------------------------------------------CACAGCAGGTGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAA
i cerAty1.NW_012006043v1           I 5669 C 0
s chlSab2.chr16                    64946377  41 + 75148670 -------------------------------------------------------------------------------------------------------CACAGCAGGTGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192298 144 +  4244037 GACCCACAGCAGGTGGGCTGGCAGCAGCTGGTCACACAGGTGGGCTGGCAGCAGGTGTTTTGACAGCAAATTGGGTGGCAGCAAGGCTGGCAGCAGCTGGACACACAGCAGGTGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2211517  45 +  4569836 GACC---------------------------------------------------------------------------------------------------CACAGCAGGTGGGCTGGCAGCAGGGTGTGCTGCAGTAGGAA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     1956  15 -    12755 GACC---------------------------------------------------------------------------------------------------CACAGCAGGTG------------------------------
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1881127  45 +  3513951 GACC---------------------------------------------------------------------------------------------------CACAGCAGGTGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              16826  15 -  4077172 GTGC---------------------------------------------------------------------------------------------------TACAGCAGGAA------------------------------
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              10562  45 -    94492 GACC---------------------------------------------------------------------------------------------------CGCAGCAGGTGGGCTGGCAGCAGGGCACGCTGCAGCAGGAA
i aotNan1.NW_018505111v1           C 0 I 108
s otoGar3.GL873537                 22875619  43 + 28711273 GACA---------------------------------------------------------------------------------------------------CACAGCAGCTGGACTGGCAGCAGGGTGTGCTACAGCAGG--
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21502957  45 + 61074082 GTCC---------------------------------------------------------------------------------------------------TACAGCAGGTGGTCTGACAGCACGTTGGGCGGCAGCAGCAA
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   561441  45 -   852752 GACC---------------------------------------------------------------------------------------------------CACAGCTGGTGGGCTGGCAGCAGGAATTGCTGCAACAGGAA
i dasNov3.JH570468                 C 0 C 0
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=311210.000000
s hg38.chr17_JH159148v1_alt           51506 25 +    88070 GGCTGGCAGCAGCTGGTCAGACAGG
s panTro5.chr17                    16362567 25 + 83181570 GGCTGGTAGCAGCTGGTCACACAGG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16296079 25 + 83442489 GGCTGGCAGCAGCTGGTCACACAGG
i panPan2.chr17                    C 0 T 28501
s gorGor5.CYUI01015385v1            4114448 25 +  4267968 GGCTGGCAGCAGCTGGTCACACAGG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2102873 25 -  2193130 GGCTGGCAGCAGCTGGTCACACAGG
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059589 25 - 80997621 GGCTGGCAGCAGCTGGTCACACAGG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2116100 25 + 10377808 GGCTGGCAGCAGCTGGTCACACAGG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013145 25 -  8458610 GGCTGACAGCAGCTGGTCACACAGA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64946418 25 + 75148670 GGCTGGCAGCAGCTGGTCACACAGG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192442 25 +  4244037 GGCTGGCAGCAGCTGGTCACACAGG
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2211562 25 +  4569836 GGCTGGCAGCAGCTGGTCACACAGG
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     1971 25 -    12755 GGCTGGCAGCAGCTGGTCACACAGG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1881172 25 +  3513951 GGCTGGCAGCAGCTGGTCACACAGG
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              16841 25 -  4077172 GGCTGGCAGCAGCTGGTCACACAGG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              10715 25 -    94492 GGCTGGCAGCAGCTGGTCACACAGG
i aotNan1.NW_018505111v1           I 108 C 0
s otoGar3.GL873537                 22875662 12 + 28711273 -------------TGGTGACAGAGG
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21503002 25 + 61074082 GGCTGGCAGCAGCTGGACACACAGC
i canFam3.chr9                     C 0 I 3
s dasNov3.JH570468                   561486 25 -   852752 GGGTGGCAGCAGCTGGGCACACAGG
i dasNov3.JH570468                 C 0 C 0
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=547173.000000
s hg38.chr17_JH159148v1_alt           51531 62 +    88070 TGGGCTGGCAGCAGGTGGTCCTGCAGCAGGTGTTTTGACAGCAAGCTGGGCGGCAGC---AAGGC
s panTro5.chr17                    16362592 47 + 83181570 TGGGCTG---------------GCAACAGGTGTTTTGACAGCAAGCTGGGCGGCAGC---AAGGC
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16267603 60 + 83442489 TGGGCTGGCAGCAGGTGATCCTGCAGCAGGNG-TTTGACAGCAAGCT-GGTGGCAGC---AAGGC
i panPan2.chr17                    T 28501 C 0
s gorGor5.CYUI01015385v1            4114473 62 +  4267968 TGGGCTGGCAGCCGGTGGTCCTGCAGCAGGTGTTTTGACAGCAAGCTGGGCGGCAGC---AAGGC
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2102898 62 -  2193130 TGGGCTGGCAGCAGGTGGTCCTGCAGCAGGTGTTTTGACAGCAAGTTGGGTGACAGC---AAGGC
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059614 47 - 80997621 TGGGCTG---------------GCAGCATGTGTTTTGACAGCAAGTTGGGCGGCAGC---AAGGC
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2116125 47 + 10377808 TGGGCTG---------------GCAGCAGGTGTTTTGACAGCAAGTTGGGCGGCAGC---AAGGC
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013170 47 -  8458610 TGGGCTG---------------GCAGCAGGTGTTTTGACAGCAAATTGGGTGGCAGC---AAGGC
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64946443 47 + 75148670 TGGGCTG---------------GCAGCAGGTATTTTGACAGCAAGTTGGGCGACAGC---AAGGC
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192467 47 +  4244037 TGGGCTG---------------GCAGCAGGTGTTTTGATAGCAAGTTGGGCGGCAGC---AAGGC
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2211587 47 +  4569836 TGGGCTG---------------GCAGCAGGTGTTTTGACAGCAAATTGGGTGGCAAC---AAGGC
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     1996 62 -    12755 TGGGCTGGCAGCAGGTGGTCCTGCAGCAGGTGTTTTGACAGCAAGTTGGGCGGCAGC---AAGGC
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1881197 62 +  3513951 TGGGCTGGCAGCAGGTGGTCCTGCAGCAGGTGTTTTGACAGCAAGTTGGGTGGCAGC---AAGGC
i saiBol1.JH378271                 C 0 I 115
s cebCap1.NW_016107543v1              16866 62 -  4077172 TGGGCTGGCAGCAGGTGGTCCTGCAGCAGGTGTTTTGACAGCATGTTGGGCGGCAGC---AAGGC
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              10740 62 -    94492 TGGGCTGGCAGCAGGTGGTCCTGCAGCAGGTGTTTTGACAGCATGTTGGGCGGCAGC---AAGGC
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22875674 57 + 28711273 TGGGTTTCCAGCAGGTAGTTCTGCAGCAGGTGGTTGGACAGCAAGTTGGGAGGCAGC--------
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21503030 65 + 61074082 CGGGCTTGCAGCAGGTGGTCCTACAGCAGGTGGTCTGACAGCACGTTGGGCGGCAGCAGCAAGGC
i canFam3.chr9                     I 3 I 45
s dasNov3.JH570468                   561511 47 -   852752 TTGGCCG---------------GCAGCAGGTGGTCTGACAGCAGAGTGGGCGGCAGC---AAGGC
i dasNov3.JH570468                 C 0 C 0
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=144199.000000
s hg38.chr17_JH159148v1_alt           51593 12 +    88070 TGGCAGCAGCTA
s panTro5.chr17                    16362639 12 + 83181570 TGGCAGCAGCTG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16267663 12 + 83442489 NGGCAGCAGCTA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114535 12 +  4267968 TGGCAGCAGCTA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2102960 12 -  2193130 TGGCAGCAGCTG
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059661 12 - 80997621 TGGCAGCAGCTG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2116172 12 + 10377808 TGGCAGCAGCTG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013217 12 -  8458610 TGGCAGCAGCTG
i cerAty1.NW_012006043v1           C 0 T 5798
s chlSab2.chr16                    64946490 12 + 75148670 TGGCAGCAGCTG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192514 12 +  4244037 TGGCAGCAGCTG
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2211634 12 +  4569836 TGGCAACAGCTG
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     2058 12 -    12755 TGGCAGCAGCTG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1881374 12 +  3513951 TGGCAGCAGCTG
i saiBol1.JH378271                 I 115 C 0
s cebCap1.NW_016107543v1              16928 12 -  4077172 TGGCAGCAGCTG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              10802 12 -    94492 TGGCAGCAGCTG
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     21503140 12 + 61074082 TGGCAGCAGCTG
i canFam3.chr9                     I 45 C 0
s dasNov3.JH570468                   561558 12 -   852752 TGGAAGCAGCTG
i dasNov3.JH570468                 C 0 C 0
e otoGar3.GL873537                 22875731  0 + 28711273 C
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=371797.000000
s hg38.chr17_JH159148v1_alt           51605 35 +    88070 GACACACAGCAGGA------------------------------GGGCTGGCAGCAGGGTGTGCT
s panTro5.chr17                    16362651 35 + 83181570 GACACACAGCAGGA------------------------------GGGCTGGCAGCAGGGTGTGCT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16267675 35 + 83442489 GACACACAGCAGGA------------------------------GGGCTGGCAGCAGGGTGTGCT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114547 35 +  4267968 GACACACAGCAGGA------------------------------GGGCTGGCAGCAGGGTGTGCT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2102972 35 -  2193130 GACACACAGCAGGA------------------------------GGGCTGGCAGCAGGGTGTGCT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059673 35 - 80997621 GACACACAGCAGGA------------------------------GGGCTGGCAGCAGGGTGTGCT
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2116184 65 + 10377808 GACACACAGCAGGAGGGCTGGCAGCAGCTGGACACACAGCAGGTGGGCTGGCAGCAGGGTGTGCT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2007431 35 -  8458610 GACACACAGCAGGA------------------------------GGGCTGGCAGCAGGGTGTGCT
i cerAty1.NW_012006043v1           T 5798 C 0
s chlSab2.chr16                    64946502 35 + 75148670 GACACACAGCAGGA------------------------------GGGCTGGCAGCAGGGTGTGCT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192526 35 +  4244037 GACACACAGCTGGA------------------------------GGGCTGGCAGCAGGGTGTGCT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2211646 35 +  4569836 GACACACAGCAGGA------------------------------GGGCTGGCAGCAGGGTGAGCT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     2070 35 -    12755 GACACACAGCAGGA------------------------------GGGCTGGCAGCAGGGTGTGCT
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1881386 35 +  3513951 GACACACAGCAGGA------------------------------GGGCTGGCAGCAGGGTGTGCT
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              16940 35 -  4077172 GACACACAGCAGGA------------------------------GGGCTGGCAGCAGGGTGTGCT
i cebCap1.NW_016107543v1           C 0 T 6040
s aotNan1.NW_018505111v1              10814 35 -    94492 GACACACAGCAGGA------------------------------GGGCTGGCAGCAGGGTGTGCT
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22875731 22 + 28711273 -------------A------------------------------GGGCTGGCAGCAGGGTGTGCT
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21503152 35 + 61074082 GACACAGAGCATGC------------------------------GGGCTTGCAGCACGTGGTCCT
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   561570 17 -   852752 GACCCACA-----A------------------------------GAACTGGA-------------
i dasNov3.JH570468                 C 0 C 0
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=443693.000000
s hg38.chr17_JH159148v1_alt           51640 51 +    88070 GCTGCAGG---------------TGGT-----------------------------------------------CACA-GT-GGTGGGCTTC---------------CAGCAGGTGGTCCTGCAGCAGGT
s panTro5.chr17                    16362686 51 + 83181570 GCTGCAGG---------------TGGT-----------------------------------------------CACA-GT-GGTGGGCTTC---------------CAGCAGGTGGTCCTGCAGCACGT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16267710 66 + 83442489 GCTGCAGG---------------TGGT-----------------------------------------------CACA-GT-GGTGGGCTTCCAGCAGGTGGTCCTGCAGCAGGTGGTCCTGCAGCACGT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114582 66 +  4267968 GCTGCAGG---------------TGGT-----------------------------------------------CACA-GT-GGTGGGCTTCCAGCAGGTGGTCCTGCAGCAGGTGGTCCTGCAGCAGGT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103007 66 -  2193130 GCGGCAGG---------------TGGT-----------------------------------------------CACA-GT-GGTGGGCTTCCAGCAGGTGGTCCTGCAGCAGGTGGTCCTGCAGCACGT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059708 51 - 80997621 GCTGCAGG---------------TGGT-----------------------------------------------CACA-CA-GGTGGGCTTC---------------CAGCAGGTGGTCCTGCAGCAGGT
i macFas5.chr16                    C 0 I 15
s macNem1.NW_012014910v1            2116249 51 + 10377808 GCTGCAGG---------------TGGT-----------------------------------------------CACA-CA-GGTGGGCTTC---------------CAGCAGGTGGTCCTGCAGCAGGT
i macNem1.NW_012014910v1           C 0 I 15
s cerAty1.NW_012006043v1            2007466 51 -  8458610 GCTGCAGG---------------TGGT-----------------------------------------------CACA-CA-GGTGGGCTTC---------------CAGCAGGTGGTCCTGCAGCAGGT
i cerAty1.NW_012006043v1           C 0 I 15
s chlSab2.chr16                    64946537 51 + 75148670 GCTGCAGG---------------TGGT-----------------------------------------------CACA-CA-GGTGGGCTTC---------------CAGCAGGTGGTCCTGCAGCAGGT
i chlSab2.chr16                    C 0 I 20296
s manLeu1.NW_012106252v1            2192561 51 +  4244037 GCTGCAGG---------------TGGT-----------------------------------------------CACA-CA-GGTGGGCTTC---------------CAGCAGGTGGTCCTGCAGCAGGT
i manLeu1.NW_012106252v1           C 0 I 15
s colAng1.NW_012122154v1            2211681 67 +  4569836 GCAGCAGGAAGGCTGGCAGCAGCTGGT-----------------------------------------------CACA-CGTGGTGGGCTTC---------------CAGCAGGTGGTCCTGCAGCAGGT
i colAng1.NW_012122154v1           C 0 I 15
s calJac3.chr5_ACFV01180105_random     2105 51 -    12755 GCAGCAGC---------------TGGT-----------------------------------------------CACA-CA-GGTGGGCTTC---------------CAGCAGGTGGTCCTGCAGCAGGT
i calJac3.chr5_ACFV01180105_random C 0 I 15
s saiBol1.JH378271                  1881421 51 +  3513951 GCTGCAGC---------------TGGT-----------------------------------------------CACA-CA-GGTGGGCTTC---------------CAGCAGGTGGTCCTGCAGCAGGT
i saiBol1.JH378271                 C 0 I 15
s cebCap1.NW_016107543v1              10935 51 -  4077172 GCTGCAGC---------------TGGT-----------------------------------------------CACA-CA-GGTGGGCTTC---------------CAGCAGGTGGTCCTGCAGCAGGT
i cebCap1.NW_016107543v1           T 6040 I 75
s aotNan1.NW_018505111v1              10849 48 -    94492 GCTGCAGG---------------TGGT-----------------------------------------------CACA-CT-GGTGGGCTCC---------------CAGCAGGTGGTCCTGCAGCA---
i aotNan1.NW_018505111v1           C 0 I 3
s otoGar3.GL873537                 22875753 51 + 28711273 GCAGCAGG---------------TGGT-----------------------------------------------CTCA-CA-GGTGGGTTGC---------------CAGCAGGTGGTCCTGCAGCAGGT
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21503187 99 + 61074082 GCAGCAGG---------------TGGTGTGACAGCACGTTGGGCGGCAGCAGCAAGGCTCGCAGCAGCTGGATCCACAGCA-GCTGGGTTCG---------------CAGCAGGTGGTCCTGCAGCACGT
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   561587 12 -   852752 ----------------------------------------------------------------------------------------------------------------------CCCACAGCTGGT
i dasNov3.JH570468                 C 0 C 0
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=1398053.000000
s hg38.chr17_JH159148v1_alt           51691 120 +    88070 AGGCTGACAGCAAGGGGAGCAAC---AGTGGGTCATGGTGTCAGGGGTGGAGG-GTGGGTTTCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGATGACCCCTTGCAATCTGGACCTTTTATACACC
s panTro5.chr17                    16362737 120 + 83181570 AGGCTGACAGCATGGGGAGCAAC---AGTGGGTCATGGTGTCAGGGGTAGAGG-GTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGATGACCCCTTGCAATCTGGACCTTTTATACACC
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16267776 120 + 83442489 AGGCTGACAGCAAGGGGAGCAAC---AGTGGGTCATGGTGTCAGGGGTGGAGG-GTGGGTTTCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGATGACCCCTTGCAATCTGGACCTTTTATACACC
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114648 120 +  4267968 AGGCTGACAGCAAGGGGAGCAAC---AGTGGGTCATGGTGTCAGGGGTGGAGG-GTGGGTTTCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGATGACCCCTTGCAATCTGGACCTTTTATACACC
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103073 120 -  2193130 AGGCTGACAGCAAGGGGAGCAAC---AGTGGGTCATGGTTTCAGGGGTGGAGG-GTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGATGACCCCTTGCAATCTGGACCTTTTATACACC
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059774 120 - 80997621 AGGCTGACAGCAAGGGGAGCAAC---AGTTGGTCATGGTGTCAGGGGTGGAAG-GTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGAAT----GTGATGACCCCTTACAATCTGGACCTTTTATACACC
i macFas5.chr16                    I 15 C 0
s macNem1.NW_012014910v1            2116315 120 + 10377808 AGGCTGGCAGCAAGGGGAGCAAC---AGTTGGTCATGGTGTCAGGGGTGGAAG-GTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGAAT----GTGATGACCCCTTGCAATCTGGACCTTTTATACACC
i macNem1.NW_012014910v1           I 15 C 0
s cerAty1.NW_012006043v1            2007532 120 -  8458610 AGGCTGACAGCAAGGGGAGCAAC---AGTGGGTCATGGTGTCAGGGGTGGAGG-GTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGAAT----GTGATGACCCCTTGCAATCTGGACCTTTTATACACC
i cerAty1.NW_012006043v1           I 15 C 0
s chlSab2.chr16                    64966884 120 + 75148670 AGGCTGGCAGCAAGAGGAGCAAC---AGTTGGTCATGGTGTCAGGGGTGGAGG-GTGGGCTTCTGTTCAGAGGTGAATTTCCCAGAAT----CTGATGACCCCTTGCAATCTGGACTTTTTATACACC
i chlSab2.chr16                    I 20296 C 0
s manLeu1.NW_012106252v1            2192627 120 +  4244037 AGGCTGACAGCAAGGGGAGCAAC---AGTTGGTCATGGTGTCAGGGATGGAGG-GTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGAAT----GTGATGACCCCTTGCAATCTGGACCTTTTATACACC
i manLeu1.NW_012106252v1           I 15 C 0
s colAng1.NW_012122154v1            2211763 120 +  4569836 AGGCTGACAGCAAGGGGAGCAAC---AGTTGGTCATGGTGTCAGGGGTGGAGG-GTGGGCTTCTGTTCAGAGGTGAATTTCCCAGAAT----CTGATGACCCCTTGCAATCTAGACCTTTTATACACC
i colAng1.NW_012122154v1           I 15 C 0
s calJac3.chr5_ACFV01180105_random     2171 120 -    12755 AGGCTGGCAGCAAGGGGAGCAGC---AGTGGGTCATGATGTCAGGGATGGAGG-GTGGGCTCCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGGTGACTCCTTCCAATCTGGACCTTTTATACATG
i calJac3.chr5_ACFV01180105_random I 15 C 0
s saiBol1.JH378271                  1881487 120 +  3513951 AGGCTGGCAGCAAGGGGAGCAGC---AGTAAGTCATAGTGTCAGGGGTGGAGG-GTGAGTTCCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGGTGACTCCCTCCAATCTGGGCCTTTTATACATC
i saiBol1.JH378271                 I 15 C 0
s cebCap1.NW_016107543v1              11061 120 -  4077172 AGGCTGGCAGCAAGGGGAGCAGC---AGTAGGTCATGGTGTCAGGGGTGGAGG-GTGGGCTCCTGTTCAGAGGTGAGTTTCCCGGAAT----CTGACGGCTCCTTCCAATCTGGGCCTTTTATACACC
i cebCap1.NW_016107543v1           I 75 I 6010
s aotNan1.NW_018505111v1              10900 120 -    94492 AGGCTGGCAGCAAGGGGAGCAGC---AGTCGGTCATGGTGTCAGGGGCGGAGG-GTGGGATCCTGTTCAGAGGTGAGTTTCCCAGAAT----CTGGTGACTCCTTCCAATCTGGGCCTTTTATACACC
i aotNan1.NW_018505111v1           I 3 C 0
s otoGar3.GL873537                 22875804 119 + 28711273 GGGTTGGCAACAAGAGGAGCAGC---AGTGGGTCATGGTGTC-TGTATCGAGG-ATGGGTTCCTGTTCAGAGGTGACCTTCCTAGAAT----CTGCTGATGTCTTCCAATATGGGCCTTTTATACACT
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21503286 128 + 61074082 GGGCTGGCAGCACGGGGAGCAGCACGATTCACTCATGGTGTCGCAGGTGGAGGCGTGGGCTTCTGTTCTGAGGTGACGTTCTCAGATTCTGACTGATGCCTCCTTCCATTCTGGGGCTTTTATACACT
i canFam3.chr9                     C 0 I 8
s dasNov3.JH570468                   561599 116 -   852752 GGGCTGGCAGCAGGGAGAGCAGC---AGGAGGTCATGGTGTCAGGGTTGAAGG---GGATTCCTGTTCAGAGATG--TTTCCCAGAAT----CTGATGATTCCTTTAATTCTGCATCTTTTATATACT
i dasNov3.JH570468                 C 0 C 0
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=871638.000000
s hg38.chr17_JH159148v1_alt           51811 89 +    88070 TGGCTTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACACTGTTTTCCACAG-TCCCTTTGGGATTGTCAAAGGGG
s panTro5.chr17                    16362857 88 + 83181570 TGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTTCTGTTTACATTGTTTTCC-CAG-TCCGTTTGTGATTCTCAAAGGGT
i panTro5.chr17                    C 0 I 5511
s panPan2.chr17                    16267896 89 + 83442489 TGGCTTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGCTGCTGTTTACACTGTTTTCCACAG-TCCCTTTGGGATTGTCAAAGGGG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114768 89 +  4267968 TGGCTTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGCTGCTGTTTACACTGTTTTCCACAG-TCCCTTTGGGATTGTCAAAGGGG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103193 87 -  2193130 TGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACATTGTTTTCC-CAG-TCCGTTTGTGATTCTCAAAGGG-
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059894 87 - 80997621 TGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGCTGCTGTTTACATTGTTTTCCACAG-TGCGTTTGTGA-TCTCAAAGGG-
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2116435 89 + 10377808 TGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGCTGCTGTTTACATTGTTTTCCACAG-TGCGTTTGTGATTCTCAAAGGGT
i macNem1.NW_012014910v1           C 0 I 16738
s cerAty1.NW_012006043v1            2007652 89 -  8458610 TGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGCTGCTGTTTACATTGTTTTCCACAG-TGCATTTGTGATTCTCAAAGGGT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64967004 89 + 75148670 TGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACATTGTTTTCCACAA-TCCTTTTGGGATTGTCAAAGGGG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192747 89 +  4244037 TGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGCTGCTGTTTACATTGTTTTCCACAG-TGCATTTGTGATTCTCAAAGGGT
i manLeu1.NW_012106252v1           C 0 I 29
s colAng1.NW_012122154v1            2211883 89 +  4569836 TGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGCTGCTGTTTACATTGTTTTCCATAG-TATGTTTGTGATTCTCAAAGGGT
i colAng1.NW_012122154v1           C 0 I 24287
s calJac3.chr5_ACFV01180105_random     2291 89 -    12755 TGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACATTGTTTTCCACAG-TCTGTTTGGGATTGTCAAAGGGG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1881607 89 +  3513951 TGGCCTTCAAAGTTTCCACCAATCAACAGTACTTTTCCTTGTTGCTGTTTACATTGTTTTCCACAG-TCTGTTTGGGATTGTCAAAGGGG
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17191 89 -  4077172 TGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTATATTGTTTTCCACAG-TCCGTTTGGGATTGTCAAAGGGG
i cebCap1.NW_016107543v1           I 6010 C 0
s aotNan1.NW_018505111v1              11020 89 -    94492 TGGCCTCCAAAGTTTCCACCAATCAGTAGGACTTTTCCTTGTTGCTGTTTACATTGTTTTCCACAG-TCCGTTTGGGATTGTCAAAGGGG
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22875923 86 + 28711273 GGGCCTCCAAAGTTTGGACCAATGGGTAAAATTTTTCCTTGT---TGTTTCCACTGTTTTGCATGG-TCACTGGGTGAATTATAAAGGAG
i otoGar3.GL873537                 C 0 I 1
s canFam3.chr9                     21503422 82 + 61074082 TCACCCCCAACGTATGGACCAATGGGCAGGACTTCCCT-------TGTTTATACCGTTTTCCATAG-TCACTGGCGGCTGGTAGAAGAGG
i canFam3.chr9                     I 8 C 0
s dasNov3.JH570468                   561715 86 -   852752 -AGGTCTCAATATTTGGACCAATATGCAGTTCTATTCCTTGT---TGTGTATATTGTTTTCCATAGATACAGAGCGAACTGTCAACGAGG
i dasNov3.JH570468                 C 0 C 0
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=16824.000000
s hg38.chr17_JH159148v1_alt           51900 2 +    88070 AA
s panTro5.chr17                    16368456 2 + 83181570 AA
i panTro5.chr17                    I 5511 C 0
s panPan2.chr17                    16267985 2 + 83442489 AA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114857 2 +  4267968 AA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103280 2 -  2193130 TA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059981 2 - 80997621 TA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2133262 2 + 10377808 AA
i macNem1.NW_012014910v1           I 16738 C 0
s cerAty1.NW_012006043v1            2007741 1 -  8458610 -A
i cerAty1.NW_012006043v1           C 0 I 26078
s chlSab2.chr16                    64967093 2 + 75148670 AA
i chlSab2.chr16                    C 0 C 0
s colAng1.NW_012122154v1            2236259 2 +  4569836 AA
i colAng1.NW_012122154v1           I 24287 C 0
s calJac3.chr5_ACFV01180105_random     2380 2 -    12755 AA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1881696 2 +  3513951 AA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17280 2 -  4077172 AA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11109 2 -    94492 AA
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22876010 2 + 28711273 AA
i otoGar3.GL873537                 I 1 I 4
s canFam3.chr9                     21503504 2 + 61074082 AA
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   561801 2 -   852752 AA
i dasNov3.JH570468                 C 0 C 0
e manLeu1.NW_012106252v1            2192836 29 +  4244037 I
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=162158.000000
s hg38.chr17_JH159148v1_alt           51902 37 +    88070 ATTGTTTCTGAAAACTTATGAATCTTTTGAA---AGTAAG
s panTro5.chr17                    16368458 36 + 83181570 GTTGTTACTGAAATCTTATGAACCTTTT-AA---ACTAAG
i panTro5.chr17                    C 0 T 5520
s panPan2.chr17                    16267987 37 + 83442489 ATTGTTTCTGAAATCTTATGAATCTTTGGAA---AGTAAG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114859 35 +  4267968 GT--TTTCTGAAGTCTTATGAATCTTTGGAA---AGTAAG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103282 28 -  2193130 GTTGTTTCCTTAAGGTTA--AAC------AG---ATTAA-
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28059983 28 - 80997621 GTTGTTTC------CTTAAG-----GTTAAACAGACTAA-
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2133264 37 + 10377808 GTTGTTTCTGAAATCTTATGAATCTGTTGAA---AGTAAG
i macNem1.NW_012014910v1           C 0 T 16748
s cerAty1.NW_012006043v1            2033820 37 -  8458610 GTTCTTTCTTAAAATTTATGAATCTGTTGAA---AGTAAG
i cerAty1.NW_012006043v1           I 26078 T 26085
s chlSab2.chr16                    64967095 37 + 75148670 GTTCTTTCTTAAAAGTTATGAATATGTTGAA---AGTAAG
i chlSab2.chr16                    C 0 C 0
s colAng1.NW_012122154v1            2236261 37 +  4569836 GTTCTTTCTTAAAAGTTATGAATCTGTTGAA---AGTAAG
i colAng1.NW_012122154v1           C 0 T 24297
s calJac3.chr5_ACFV01180105_random     2382 37 -    12755 GTTGTTTCTGAACTCTTATGAATCTTTTGAA---ACTAAA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1881698 37 +  3513951 GTTGTTTCTGAACTCTTATGAATCTTTTGAA---AGTAAG
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17282 37 -  4077172 GTTGTTTCTGAACTCTTATGAATCTTTTGAA---AGTAAG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11111 37 -    94492 GTTATTTCTGAACTCTTATGAATCTTTTGAA---AGTAAG
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22876016 35 + 28711273 GTTGTAGT--AAGTGTTAAGAATATATCAGA---AGTAAG
i otoGar3.GL873537                 I 4 I 2
s canFam3.chr9                     21503506 34 + 61074082 ---GTTCCCTAAGTGTTAGGAATCCCTAGAG---AATGGG
i canFam3.chr9                     C 0 I 1
s dasNov3.JH570468                   561803 35 -   852752 -TTTTTTCCTGACATTT-TGCTTCTGTTGAA---AATTAG
i dasNov3.JH570468                 C 0 C 0
e manLeu1.NW_012106252v1            2192836 29 +  4244037 I
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=3316.000000
s hg38.chr17_JH159148v1_alt           51939 2 +    88070 -GG
s panTro5.chr17                    16362974 2 + 83181570 -GG
i panTro5.chr17                    T 5520 C 0
s panPan2.chr17                    16268024 2 + 83442489 -GG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114894 2 +  4267968 -GG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103310 2 -  2193130 -GG
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28060011 2 - 80997621 -GG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2116553 2 + 10377808 -GG
i macNem1.NW_012014910v1           T 16748 C 0
s chlSab2.chr16                    64967132 2 + 75148670 -GG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192865 2 +  4244037 -GG
i manLeu1.NW_012106252v1           I 29 C 0
s colAng1.NW_012122154v1            2212001 2 +  4569836 -GG
i colAng1.NW_012122154v1           T 24297 C 0
s calJac3.chr5_ACFV01180105_random     2419 2 -    12755 -GA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1881735 2 +  3513951 -GA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17319 2 -  4077172 -GA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11148 2 -    94492 -GA
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     21503541 1 + 61074082 -G-
i canFam3.chr9                     I 1 C 0
s dasNov3.JH570468                   561838 2 -   852752 TG-
i dasNov3.JH570468                 C 0 C 0
e otoGar3.GL873537                 22876051 2 + 28711273 I
e cerAty1.NW_012006043v1            2033857 26085 -  8458610 T
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=1051346.000000
s hg38.chr17_JH159148v1_alt           51941 106 +    88070 TTTAATCTGTTTCTTAATTGTGAATTACTCATAGAAACTTCCTTTCAGATAAAAGGAAGCCCATCTCATCATCAGCATCATTCCTGCTCTGACCATCATCTAGTCA
s panTro5.chr17                    16362976 106 + 83181570 TTTAATCTGTTTCTTAATTGTGAATTACTCATAGACACTTTGTTTCAGATAAAAGGAAGGCAGTCTCATCATCAGCATCATTCCTGTTCTGACCATCATCTGGTCA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16268026 106 + 83442489 TTTAATCTGTTTCTTAATTGTGAATTACTCATAGAAACTTCCTTTCAGATAAAAGGATGCCCATCTCATCATCAGCATCATTCCTGCTCTGACCATCATCTAGTCA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4114896 106 +  4267968 TTTAATCTGTTTCTTAATTGTGAATTACTCATAGAAACTTCCTTTCAGATAAAAGGAAGCCCATCTCATCATCAGCATCATTCCTGCTCTGACCATCATCTAGTCA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103312 106 -  2193130 TTTAATCTCTCTCTTAATTGTGAATTACTCATAGAAACTTTGTTGCAGATAAAAGGAAGCCCATCTCATCATCAGCATCATTCCTGCTCTGACTATCATCTGGTCA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28060013 106 - 80997621 TTTAATCTGTTTCTTAATTGTTAATTACTCATAGAAACTTCGTTTCAGATAAAAGGAAGCCCATTTCAACATCAGCATCTTTCCTGCTCTGACCATCATCTGGTCA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2116555 106 + 10377808 TTTAATCTGTTTCTTAATTGTTAATTACTCATAGAAACTTCGTTTCAGATAAAAGGAAGCCCATTTCAACATCAGCATCTTTCCTGCTCTGACCATCGTCTGGTCA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2007772 106 -  8458610 TTTAATCTGTTTCTTAATTGTGAATTACTCATAGAAACTTCGTTTCAGATAAAAGGAAGCCCATCTTATCATCAGCATCTTTCCTGCTCTGACCATCATCTGGTCA
i cerAty1.NW_012006043v1           T 26085 C 0
s chlSab2.chr16                    64967134 106 + 75148670 TTTAATCTGTTTCTTAATTGTGAATTACTCATAGAAACTTCGTTTCAGATAGAAGGAAGCTCCTCTCATCATCGGCATCATTCCTGCTCTGACAATCCTCTGGTCA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192867 106 +  4244037 TTTAATCTGTTTCTTAATTGTGAATTACTCATAGAAACTTCGTTTCAGATAAAAGGAAGCCCATCTCATCATCAGCATCTTTCCTGCTCTGACCATCATCTGGTCA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2212003 106 +  4569836 TTTAATCTGTTTCTTAATTGTTAATTACTCATAGAAACTTCGTTTCAGATAAAAGGAAGCCCATTTCATCATCAGCATCTTTCCTGCTCTGACCATCATCTGGTCA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     2421 106 -    12755 TTTAATCTGTTTCTTAATTGTGAATTATTCATGGAGATGTTGTTTCAGATAAAAGGAATGAGGTCTCATCATCAGCATCATTCTTGCTCTGACCATCTTCTGGTCA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1881737 106 +  3513951 TTTAATCTGTTTCTTAATTGTGAATTATTCATGGAATTGTTGTTTCAGATAAAAGGAATGAGGTCTCATCATCAGCATCACTCTTGCTCTGACCATCTTCTGGTCA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17321 106 -  4077172 TTTAATCTGTTTCTTAATTGTGAATTATCCATGGAAATGTTGTTTCAGATAAAAGGAATGAGGTCTCATCATCAGCATCATTCTTGCTCTGACCATCATCTTGTCA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11150 106 -    94492 TTTAATCTGTTTCTTAATTGTGAATTATTCATGGAAATGTTGTTTCAGATAAAAGGAATGAGGTCTTATCATCAGCATGGTTCCTGCTCTGACCATCTTCTGGTCA
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22876053 105 + 28711273 TTTGATCTGTTTCCTAATTGTGAATAACTCATAGAAACTGT-TTTCAGATAAAAGGAAAGTGATCATATCATCAGCATTGTTCCTGCTCTGGTCGCCACCTGGTCC
i otoGar3.GL873537                 I 2 C 0
s canFam3.chr9                     21503542 102 + 61074082 CTTAACATGTTT--TAATTGAGAGTAACTCATAGGAAGATTGT--CAGAGGGAAGCAAGGTGGTCACGTTAGCAGCCTCGTTCTTGCTTCCGGGGCCGTGGGATCA
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   561840 100 -   852752 TTTAATCATTTTCCTAATTA--AAGCATTCATAGAATCTT--TTTCAGACTTAAGGACGGCGATCACATCCTCACCATCATTCCTGCCCC-ATCATCATCT-GTCA
i dasNov3.JH570468                 C 0 C 0
e rheMac8.chr16                    30139106 31425 - 77216781 I

a score=209985.000000
s hg38.chr17_JH159148v1_alt           52047 20 +    88070 TGTGAT--AGTTCTTGGTGATC
s panTro5.chr17                    16363082 20 + 83181570 TGTGAT--AGTTCCTTTTGATC
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16268132 20 + 83442489 TGTGAT--AGTTCTTGGTGATC
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115002 20 +  4267968 TGTGAC--AGTTCTTGGTGATC
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103418 20 -  2193130 TGTGAT--AGTTCCTGTTGATC
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170531 20 - 77216781 TGTGAT--AGGTCCTGGTAATA
i rheMac8.chr16                    I 31425 C 0
s macFas5.chr16                    28060119 20 - 80997621 TGTGAT--AGTTCCTGGTGATC
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2116661 20 + 10377808 TATGAT--AGTTCCTGGTGATC
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2007878 20 -  8458610 TATGAT--AGTTCCTGGTGATC
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64967240 20 + 75148670 TGTGAT--AGGTCCTGGTAATA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192973 20 +  4244037 TATGAT--AGTTCCTGGTGATC
i manLeu1.NW_012106252v1           C 0 I 26417
s colAng1.NW_012122154v1            2212109 20 +  4569836 TATGAT--AGTTCCTGGTGATC
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     2527 20 -    12755 TGTGAT--CATTCCTAGTGACC
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1881843 20 +  3513951 TGTGAT--CATTCCTGGTGACC
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17427 20 -  4077172 TGTGAT--AGTTCCGGGTGACC
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11256 20 -    94492 TGTGAT--CATTCCTGGTGACC
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22876158 20 + 28711273 TGTGAT--AATTCCTACTGGCC
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21503644 22 + 61074082 CGTGATGCAGTTCCTGGGAAGT
i canFam3.chr9                     C 0 I 4
s dasNov3.JH570468                   561940 20 -   852752 TGTGAT--AGTTCCCGCTGGCC
i dasNov3.JH570468                 C 0 C 0

a score=1064836.000000
s hg38.chr17_JH159148v1_alt           52067 107 +    88070 --TGGGAAGCTCAG-GAAATTCTCTCTGCCCAGCCTCAC--AGTTG-GCTGTATGTAGACTGGGAAGTGTCTGTGGGGAGA----AGCATGATGCTGATATATTTACGGTGACAAAA
s panTro5.chr17                    16363102 107 + 83181570 --TGGGAGGCTCAG-GAAGTTCTCTCTGTCCAGCCTCGT--GGCTG-GCTGTATGTAGACTGGGAAGTGTCTGTGGGGAGA----AGCATGATGCTGATATATTTACAGTGAGAAAA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16268152 107 + 83442489 --TGGGAAGCTCAG-GAAGTTCTCTCTGCCCAGCCTCAC--GGTTG-GCTGTATGTAGACTTGGAAGTGTCTGCGGGGAGA----AGCATGATGCTGATATATTTACGGTGACAAAA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115022 107 +  4267968 --TGGGAAGCTCAG-GAAGTTCTCTCTGCCCAGCCTCAT--GGTTG-GCTGTATGTAGACTGGGAAGTGTCTGTGGGGAGA----AGCATGATGCTGATATATTTACGGTGACAAAA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103438 107 -  2193130 --TGGGAGGCTCAG-GAAGTTCTCTCTGCCCAGCCTCAT--GGTTG-GCTGTATGTAGCCTGGGAAGTGTCTGTGGGGAGA----AGCATGATGCTGATATATTTACAGTGACAAAA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170551 107 - 77216781 --TGGGAGACTCAC-GTACTTCTTTCTGCCCAGCCTCAC--GGTTG-GCTGAATGTGGTCTGAGAAGTGCCTGTGGGGAGA----AGTATGATGTTGATAAATTTATGGTGACAAAA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28060139 107 - 80997621 --CGGGAGGCTCAG-GAAGTTCTCTCTGCCCAGCCTCAT--AGTTG-GCTGTATGTAGACTGGGAAGCGTCTGTGGGGAGA----AGCATGATGCTGATATATTTATGGTGACAAAA
i macFas5.chr16                    C 0 M 801
s macNem1.NW_012014910v1            2116681 107 + 10377808 --TGGGAGGCTCAG-GAAGTTCTCTCTGCCCAGTCTCAT--AGTTG-GCTGTATGTAGACTGGGAAGTGTCTGTGAGGAGA----AGCATGATGCTGATATATTTATGGTGACAAAA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2007898 107 -  8458610 --CAGGAGGCTCAG-GAAGTTCTCTCTGCCCAGCCTCAT--AGTTA-GCTGTATGTAGACTGGGAAGTGTTTGTGAGGAGA----AGCATGATGCTGATATATTTATGGTGACAAAA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64967260 107 + 75148670 --TGGGAGACTCAC-GTACTTCTCTCTGCCCAGCCTCAC--GGTTG-GCTGAATGTGGTCTGAGAAGTGCCTGTGGGGACA----AGTATGATGTAGATAAATTTATGGTGACAAAA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219410 107 +  4244037 --CGGGAGGCTCAG-GAAGTTCTCTCTGCCCAGTCTCAT--GGTTG-TCTGTATGTGTCATGGGAAGTGTCTGTGGGGAGA----AGCATGATGCTGATCTACTTACCGTGACAAAA
i manLeu1.NW_012106252v1           I 26417 C 0
s colAng1.NW_012122154v1            2212129 107 +  4569836 --CGGGAGGCTCAG-GAAGTTCTCTCTGCCCAGCGTCAT--AGTTG-GCTGTATGTAGACTGGGAAGTGTCTGTGAGGAGA----AGCATGATGCTGATATGTTTATAGTGACAAAA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     2547 106 -    12755 --AGGGAGGCTCAT-GAAGTTCTCTT-GCCCAGCCTCAC--GTTTG-GCTGTGTGTAGGCTGGGCAGTGTCTTTGGGGAGA----AGCATGATCCCGATATATTTACAGTGACAAAA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1881863 106 +  3513951 --AGGAATACTCAT-GAAGTTCTCTC-GCCCAGCCTCAT--GTTTG-GCTGTGTGTAGACTGGGGAGTGTCTGTGGGGAGA----AGCATGATGCCGATATATTTACAGTGACAAAA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17447 106 -  4077172 --AGGAAGGCTCAT-GAAGTTCTCTC-GCCCAGCCTCAC--GTTTG-GCTGTGTGTAGACTGGGCAGTGTCAGTGGGGAGA----AGCACGATGCCATTATATTTACAGGGACAAAA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11276 106 -    94492 --AGGGAGGCTCAG-GAGGTTCTCTC-GCCCAGCCCCAT--GTTTG-GCTGTGTGTAGACTGAGCAGTGTCTGTGGGGAGA----AGCATGATGCCGATATATTTACAGTGACAAAA
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22876178 108 + 28711273 --TGGGAGGGTTCC-AAAGTTCTCTCTGCTCACCCTATT--ACTTGTGTTGTATGTAGATTAGGAAGGGTCTATGGGGAGT----GGTGAGGTGCTGATATGTGCATGTTGTTGAAT
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21503670 111 + 61074082 ----GGTGAGTCAGTTTCGTGCTCCTTGCCCAGCATTGGTAGTTTG-GCTGCATGCAGACTGGG-AGTATCCCTGAGGTGAAGGGAGCTTGATGGTTATATGTTCATAGTGATGAAT
i canFam3.chr9                     I 4 C 0
s dasNov3.JH570468                   561960 110 -   852752 TGGGGAGGGTCCTT-ACAGTTGTTGGTCCCCAACTTTGTTCCTTTG-GCTGTAC-TAGATTGGCAAGTACACCTAGGGGCA----TGCATGATACTGATACAACCCCAGGGACAAAT
i dasNov3.JH570468                 C 0 C 0

a score=2292941.000000
s hg38.chr17_JH159148v1_alt           52174 271 +    88070 TGAATCCATGCCTGGGCCCAAGACAATTCACCCACCAAAT-TCTGACTCAAGA--CT--AACAGGCA----TCT--CT----GTGCAATCCTCA---CCACCTGTGTCTTTCAGTTATTTGAACGTCACTTGGGAAGAGGGTGTCTGTCACAGTGTGTTCC----ATGTGGCAGAGCCGATCGAGAGCAGGTGGATGC--AGAG------A-----AATCCACTGGGATTTAGACAGCATCAAGCAATCTACGCCCAGGGGTGAGCATTCAT-----TCTCACTTGTCTGCGAGTGTGGGGATTACCGGGA
s panTro5.chr17                    16363209 269 + 83181570 TGAATCCATGCCTGGGCCAAAGACTAGTCACCCACCAAAT-TCTGACTCAAGA--CT--AACAGGCA--TCTCT--CT----GTGCAACCCTCA---CCACC--TGTCTTTCAGTTCTTTGAACGTCACTTGGGAAGAGGGTGTTTGTCACAGTGTGTTCC----ATGTGGCAGAGCAGATCGAGAGCAGGTGGGTGC--AGAT------T-----AATCCACTGGGATTTAGACAGCATCAAGTAATCTATGCCC-TGAGTGACCATTCAT-----TCTGACTTGTCTGTGAGCGTGGCGATT-CCAGGA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16268259 273 + 83442489 TGAATCCATGCCTGGGCCCAAGACAATTCACTCACCAAAT-TCTGACTCAAGA--CT--AACAGGCA--TCTCT--CT----GTGCAATCCTCA---CCACCTGTGTCTTTCAGTTATTTGAACGTCACTTGGGAAGAGGGTGTCTGTCACAGTGTGTTCC----ATGTGGCAGAGCAGATCGAGAGCAGGTGGATGC--AGAG------A-----AATCCACTGGGATTTAGGCAGCATCAAGCAATCTACGCCCAGGGGTGAGCATTCAT-----TCTCACTTGTCTGCGAGTGTGGGGATTACCGGGA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115129 273 +  4267968 TGAATCCATGCCTGGGCCGAAGACAATTCACCCACCAAAT-TCTGACTCAAGA--CT--AACTGGCA--TCTCT--CT----GTGCAATCCTCA---CCACCTGTGTCTTTCAGTTATTTGAACGTCACTTGGGAAGCGGGTGTTTGTCACAGTGTGTTCC----ATGTGGCAGAGCAGATCGAGAGCAGGTGGATGC--AGAA------A-----AATCCACTGGGATTTAGACAGCATCAAGCAATCTACGCCCAGGGGTGACCATTCAT-----TCTCACTTGTCTGCAAGTGTGGGGATTACCGGGA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103545 267 -  2193130 TGAATCCATGCCTGGGCCCAAGACTAGTCACCCACCAAAT-TCTGACTCAAGA--CT--AACAGGCA--TCTCT--CT----GTGCAACCCTCA---CTACCTGTGCCTTTCAGTTCTTTGAACATCAC-----AAGAGGGTGTCTGTCACAGTGTATTCC----ATGTGGCAGAGCAGATCGAGAGCAGATGGATGC--AGAG------A-----AATTCACTGGGATTTAGACAACATCAAGCAATCTATGCCC-TGAGTGACCATTCAT-----TCTGCCTTGTCTGCGAGTGTGGTGATCACCAGGA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170658 275 - 77216781 TGAATCCATTCCTGGGCCCAAGACTATTCACCCACCAAAT-TCTGATTGAAGA--CT--AATAGGTATCTCTCT--CT----GTGCAACCCTGA---CCACCTGTGTCTTTCAGTTCTTTGAATGTCACTTGGGAAGAGAGTATCTGGCAGAGTGTGTTCC----ATGTGGCAGAGCAGATTGAGAGCAAGTGGATGC--AGAG------A-----ATTCCACTGGGATTTAGAGAGCATAAAGCAATGTATGCCCTGGGGCGACCAGTCAT-----TCTGACTTACCTGTGAGTGTGGTGATTACCAGGA
i rheMac8.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2116788 272 + 10377808 TGAATCCATGCCTGGGCCCAAGACTATTCACCCACCAAAT-TCTGATTCAAGA--CT--AACAGGCA--TCTCT--CT----ATGCAACCCACA---CCACCTGTGTCTTTCAGTTCTTTGAATGTCACTTGGGAAGAGGGTGTCTGGCAGAGTGTGTTCC----ATGTGGCAGAGCAGATTGAGAGCAGGTGGATGC--AGAG------A-----AGTCCACTGGGATTTAGACAGCATCAAGCAATCTACGCCCT-GAGTGACCAGTCAT-----TCTGATTTGTCTGCGAGTGTGGCGATTACCAGGA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2008005 272 -  8458610 TGAATCCATGCCTGGGCCCAAGACTATTCACCCACCAAAT-TCTGATTCAAGA--CT--AACAGGCA--TCTCT--CT----GTGCAACCCACA---CCATCTGTGTCTTTCAGTTCTTTGAAGGTCACTTGGGAAGAGGGTGTCTGGCAGAGTGTGTTCC----ATGTGGCAGAGCAGATTGAGAGCAGGTGGATGC--AGAG------A-----AATCCACTGGAATTTAGACAGCATCGAGCAATCTATGCCCT-CAGTGACCAGTCAT-----TCTGACTTGTCTGCGAGTGTGGCGATTACCAGGA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64967367 273 + 75148670 TGAATCCATTCCTGGGCCCAAGACTATTCACCCATCAAAT-TCTGATTGAAGA--CT--AATAGGTA--TCTCT--CT----GTGCAACCCACA---CCACCTGTGTCTTTCAGTTCTTTGAATGTCACTTGGGAAGAGGGTGTCTGGCAGAGTGTATTCC----ATGTGGCAGAGCAGATTGAGAGCAAGTGGATGC--AGAG------A-----ATTCCACTGGGATTTAGAGAGCATAAAGCAATCTATCCCCTGGGGCGACCATTCGT-----TCTGACTTACCTGTGAGTGTGGTGATTACCAGGA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219517 273 +  4244037 GGAATCCATGCCTGGACCCAAGACTATTCACCCACCAAAT-TCTAGCTCAAGA--CT--AACAGGCA--TCTCC--CT----GTGCGCCCCTCA---CCATCTGTGTCTTTCAGTTCTTTGAACATCACTTGGGAAGAGGGTGTCTGGCAGAGTGTGTTCC----ATGTGGCAGAGCAGATCGAGAGCAAGTGGATGC--AGGG------A-----AATCCACTGGGATTTTGACAGCGTCGAGCAATCTAAGCCTGTGCGTGACTATTCAT-----TCTGACTTGTCTGTGAGTGTGGCGATTACCGGGA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2212236 275 +  4569836 TGAATCCATGCCTGGGTCCAAGACTATTCACCCACCAAAT-TCTGATTCAAGA--CT--AACAGGCA--TCTCT--CT----GTGCAACCCACACTCCCACCTGTGTCTTTCAGTTCTTTGCATGTCACTTGGGAAGAGGGTGTCTGGTAGAGTGTGTTCC----ATGTGGCAGAGCAGATGGAGAGCAGGTGGATGC--AGAG------A-----AATCCACTGGGATTTAGACAGCATCAAGCAATCTATGCCCT-GAGTAACCAGTCAT-----TCTGATTTGTCTGTGAGTGTGGCGATTACCAGGA
i colAng1.NW_012122154v1           C 0 I 6273
s calJac3.chr5_ACFV01180105_random     2653 277 -    12755 TGAGTCCATGCCTGGGCCCAAGACTATTCACCAACAAAAT-TCTAATTCAAGA--CT--AACATGCA--TCTCT--C------TGCAACCTATA---CCACCTGTGTCTTTTGATTCTGTGAACGTCACTTGGGAAGAGGGTGCCTGGCACAGTGTGTTCCATGCACGTGGCAGAGCTGATCAAGCGTAGGTGGATGCAAAGAG------A-----AATCCACTGGGATTTTGGCAGTATTAAGCCATCTATGCCCTGgggtgaccattcat-----tctgacttgtctgggagtgtggggattaccagaa
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1881969 273 +  3513951 TGAATCCATGCCTGGGCCCAAGACTATTCACCAACCAAAT-TCTAATTCAAGA--CT--AGCAGGCA--TCTCT--C------TGCAACCTATA---CCACCTGTGTTTTTCGGTTCTGTGAACGTCACTTGGGAA----ATGTCTGGCACAGTGTGTTCCATGCATGTGGCAGAGCCAATCGAGCGTAGGTGGATGCAAAGAG------A-----AATCCACTGGGATTTTGGCAGCATCAAGCAATCTATGCCCTGGGGTGACCACTCAT-----TCTGACTTGTCTGCGAGTGTGGGGATTACCAGAA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17553 277 -  4077172 TGAATCCATGCCTGGGCCCAAGACTATTCACCAGCCAAAT-TCTAATTCAAGA--CT--AACAGGCA--TCTCT--C------TGCAACCTATA---CCACCCGTGTCTTTGGATTCTGTGAACGTCACTTGGGAAGAGGGTGCCTGGCACAGTGTGTTCCCTGTATGTGGCAGGGTCGATCGAGCGTAGGTGGATGCAAAGAG------A-----AATCCACTGGGATTTTGGCAGCATCAAGCAATCTATGCCCTGGGGTGACCATTCAT-----TCTGACTTGTCTGCCAGTGTGGGGATTACCAGAA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11382 277 -    94492 TTAATCCATGCCTGGGCCCAACACTATTCACCAACCAAAT-TCTAATTCAAGA--CT--AACAGGCA--TCTCT--C------TGCAACCTATA---CCACCTGTGTCTTTCGGTTCTGTGAACGTCACTTGGGAAGAGGGTGCCTGGCACAGTGTGTTCCATGCATGTGGCAGAGCCGATCGAGCATAGGTGGATGCAAAGAG------A-----AATCCACTGGGATTTTGGCAGCATCAAGCAATCTATGCCCCGGGGTGACCATTCAT-----TCTGATTTGTCTGCGAGTGTGGCGATTACCAGAA
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22876286 254 + 28711273 TAAATCCATGCTTTGGTCTAAGTTCATTCACTTGCAAAAG-CCAGAACCAACA--CT--AACAGGCA--TCTCTTCCT----GTACAACCTACT---GCAGGGGTGTCTCCCAGTTCTATCCATGACACTTGGGAAGAGGATGTTT-TTATAATTTGCTCC----ATGTGGCAGAG---AACCAAAGCAGATAGACAG--AAGG------ATAAGTAGTACACCGGCAATAAGAACGTATCA----------GTTTGTgggtga-cattcac-----tttgatttgcctg---gtgt--------ccaaag
i otoGar3.GL873537                 C 0 I 1
s canFam3.chr9                     21503781 272 + 61074082 TGCAATCATGCTGGAGCCCGAGTCTGTTTCCCCA--AAGTGCCTCATTCCAGAGGCC--CGCAGGCA--TCTGT--CTCTTGGAGCACCCTACC---TCGTTTGCATAGGGCAGTGCATTCAAAGAAACTTGGGTGGAGGACATCTGGCATCATGTCTTCC----ATATGTCAAGGCCGAATC-GAGCAGGTGGATAG--AAAC------A--------------GGACTAAACCAGCATCCATGAACATACTTCCT-GAGTGACCAGCAGTCCTGCTCTGATTTACCCAGAAATGAGTGTTTTCCCAGGC
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   562070 277 -   852752 TGGCTCCCTGCCTTTGTCCAAGACTTTTCACCAAATGAAG-CCTCATTCAAGA--CTGCAACAAGAA--TTTAT--CT-------TACTCTGTG---GCAAATTTAGTCTACCATTCTATGAAAGATATTTTGGTAGAAGATGCTTGGCATACTCCTTTC-----ATATGGCAAAACAGAAGTAAAGCAGGTGGATAG--AAGGGAGCATA-----ATTATACTGTGATTCAGAAGGTATCAGTCAATTTACATCTTGATgtgacaaaccat-----cttggtttgcccaaagctgtggggcttccccgga
i dasNov3.JH570468                 C 0 C 0
e macFas5.chr16                    28060246 801 - 80997621 M

a score=700701.000000
s hg38.chr17_JH159148v1_alt           52445 91 +    88070 TGAGAATGTAGAACTTTCTA-TGACATAACTGCTTGAGATTCAGGCCAACGTGCATAAGCTG-TG-GCTCTAGCCATAACCCTGGTTACTAGCA
s panTro5.chr17                    16363478 90 + 83181570 TGAGAATGTAGGACTCTCTA-TGGCATAACTGCTTGAGATTCAGGCCAACCAGCATGTGCTT-TG-GCTCTAGCCGCAACCC-GGTTACTAGCA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16268532 91 + 83442489 TGAGAATGTAGAACTTTCTA-TGACATAACTGCTTGAGATTCAGGCCAATGTGCATAAGCTG-TG-GCTCTAGCCATAACCCTGGTTACTAGCA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115402 91 +  4267968 TGAGAATGTAGAACTTTCTA-TGACATAACTGCTTGAGATTGAGGCCAACGTGCATAAGCTG-TG-GCTCTAGCCATAACCCTGGTTACTAGCA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103812 90 -  2193130 CGAGAATGTAGAACTCTCTA-TGGCATTACTGCTCGAGATTCAGGCCGACCAGCATGTGCTG-TG-GCTCTAGACGCAACCC-GGTTACTAGCA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170933 91 - 77216781 TGAGAATGTAGGACTTTCTA-TCACATAACTGGTTGAGATTCAGACCAACCAGCATGTGCTG-TG-GCTCTAGCCTTAAACCTAGTTACTAGCA
i rheMac8.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2117060 90 + 10377808 CGAGAATGTAGGGCTTTCTA-TGACATAACTGATTGAGATTCAGGCCAACCAGCATGCACTC-TG-GCTCTAG-CTGCAACCCAGTTACTAGCA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2008277 91 -  8458610 TGAGAGTGTAGAACTTTCTG-TGACATAACTGCTTGAGATTCAGGCCAATGAGCACGAGCTA-TG-GCTCTAGCCATAACCCTGGTTACTAGCA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64967640 91 + 75148670 TGAGAATGTAGGACTTTCTA-TCACGTAACTGGTTGAGATTCAGACCAACCAGCATGTGCTG-TG-GCTCTAGCCTTAAACCTAGTTACTAGCA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219790 91 +  4244037 TGATAATGGAGGACTTTCTA-TCACATAACTGCTTGAGATTCAGGGCAACGAGTATGAGCTG-TG-CTTCTAGCCTTAAAACTAGTGACTAGCA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218784 90 +  4569836 CGAGAATGTAGGACTTTCTA-TGACATAACTGACTGAGATTCAGGCCAACCAGCATACGCTC-TG-GCTCTAGCCAC-AACCCGGTTACTAGCA
i colAng1.NW_012122154v1           I 6273 C 0
s calJac3.chr5_ACFV01180105_random     2930 91 -    12755 tgagaatgtagcactttcta-tgacataaccgctttagtttcaggccaaccagcatgagctg-TG-GTTCTGGCCCTAACCCTGGTTACTAGCA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1882242 90 +  3513951 TGAGAATGTAGCACTTTCTA-TGACATAATTGCTTTAGATTCAGGCCAACCAGCATGAGCTG-TG-GTTCTAGCCCTAACCCTGGTTACTA-CA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17830 91 -  4077172 TGAGAATGCAGCACTTTCTA-TGACATAACTGCTTTAGATTCAGGCCAACCGGCATGAGCTG-TG-GTTCTAGCCCTAACCCTGGTTACTGGCA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11659 91 -    94492 TGAGAATGTAGCACCTTCTA-TGACATAACTGCTTTAGATTCAGGTCAACCAGCATGAGCCG-TG-GTTCTAGCCCTAACCCTGGTTACTAGCA
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22876541 92 + 28711273 ggaaaacgtgtgagtttctg-tgatatgactgccatagatccaggcaaaccaggatgagctgatt-acactaTGTCTAACCCTGGGTACCAACA
i otoGar3.GL873537                 I 1 C 0
s canFam3.chr9                     21504053 65 + 61074082 ------TGTGGG------------TATAAGCGGGGCATTTTGGGGTGAGTCGG----------TG-ACCCTCGTCCTAACCTTGTTAACCAGCA
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   562347 86 -   852752 ------cgtgtgatttttcagtgctaatgctgggacagtttctggcaaactgg-acaagttg-aacactcCagtcctaaccctgtttactagca
i dasNov3.JH570468                 C 0 I 27781
e macFas5.chr16                    28060246 801 - 80997621 M

a score=11339.000000
s hg38.chr17_JH159148v1_alt           52536 2 +    88070 CA
s panTro5.chr17                    16363568 2 + 83181570 CA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16268623 2 + 83442489 CA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115493 2 +  4267968 CA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103902 2 -  2193130 CA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30171024 2 - 77216781 CA
i rheMac8.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2117150 2 + 10377808 CA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2008368 2 -  8458610 TG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64967731 2 + 75148670 CA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219881 2 +  4244037 AA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218874 2 +  4569836 CA
i colAng1.NW_012122154v1           C 0 T 5961
s calJac3.chr5_ACFV01180105_random     3021 2 -    12755 CA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1882332 2 +  3513951 CA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17921 2 -  4077172 TA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11750 2 -    94492 CA
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22876633 2 + 28711273 GA
i otoGar3.GL873537                 C 0 I 7
s canFam3.chr9                     21504118 2 + 61074082 GA
i canFam3.chr9                     C 0 C 0
e dasNov3.JH570468                   562433 27781 -   852752 I
e macFas5.chr16                    28060246 801 - 80997621 M

a score=22208.000000
s hg38.chr17_JH159148v1_alt           52538 5 +    88070 GTCAG
s panTro5.chr17                    16363570 5 + 83181570 GTAAG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16268625 5 + 83442489 GTCAG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115495 5 +  4267968 GCCAG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103904 5 -  2193130 GTGAG
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30171026 5 - 77216781 GTAAG
i rheMac8.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2117152 5 + 10377808 GTAAG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2008370 5 -  8458610 TTCAG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64967733 5 + 75148670 GTTAG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219883 5 +  4244037 GTAAG
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     3023 5 -    12755 GGTAG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1882334 5 +  3513951 GTTAG
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17923 5 -  4077172 GGAAG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11752 5 -    94492 GGTAG
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22876642 5 + 28711273 ACTAA
i otoGar3.GL873537                 I 7 C 0
s canFam3.chr9                     21504120 5 + 61074082 GTGAG
i canFam3.chr9                     C 0 I 15749
e dasNov3.JH570468                   562433 27781 -   852752 I
e colAng1.NW_012122154v1            2218876 5961 +  4569836 T
e macFas5.chr16                    28060246 801 - 80997621 M

a score=82804.000000
s hg38.chr17_JH159148v1_alt           52543 13 +    88070 TATCAt------ttcttct
s panTro5.chr17                    16363575 13 + 83181570 CAGCAT------GTCTTCT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16268630 13 + 83442489 TATCAt------ttcttct
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115500 13 +  4267968 TATCAt------ttcttct
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103909 13 -  2193130 CATCAT------GTCTTCT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30171031 13 - 77216781 CGTCAT------TTCTTCT
i rheMac8.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2117157 13 + 10377808 CATTAT------GTCTTCT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2008375 13 -  8458610 TGTCGt------ttcttct
i cerAty1.NW_012006043v1           C 0 I 115
s chlSab2.chr16                    64967738 13 + 75148670 CGTCAT------CTCTTCT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219888 13 +  4244037 CATCAT------TTCTTCT
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     3028 13 -    12755 TGTCAT------TTCTTCT
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1882339 13 +  3513951 TGTTAT------GTCTTCT
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17928 13 -  4077172 TGTTAT------TTCTTCT
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11757 13 -    94492 TGTCAT------TTCTTCT
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22876647 19 + 28711273 TGTCACTGGttatttttct
i otoGar3.GL873537                 C 0 C 0
e canFam3.chr9                     21504125 15749 + 61074082 I
e dasNov3.JH570468                   562433 27781 -   852752 I
e colAng1.NW_012122154v1            2218876 5961 +  4569836 T
e macFas5.chr16                    28060246 801 - 80997621 M

a score=14599.000000
s hg38.chr17_JH159148v1_alt           52556 2 +    88070 ct
s panTro5.chr17                    16363588 2 + 83181570 CT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16268643 2 + 83442489 ct
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115513 2 +  4267968 ct
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103922 2 -  2193130 CT
i nomLeu3.chrUn_GL397460_1         C 0 I 6
s rheMac8.chr16                    30171044 2 - 77216781 CT
i rheMac8.chr16                    C 0 T 4005
s macNem1.NW_012014910v1            2117170 2 + 10377808 CT
i macNem1.NW_012014910v1           C 0 I 10598
s chlSab2.chr16                    64967751 2 + 75148670 CT
i chlSab2.chr16                    C 0 T 19227
s manLeu1.NW_012106252v1            2219901 2 +  4244037 CT
i manLeu1.NW_012106252v1           C 0 T 14555
s calJac3.chr5_ACFV01180105_random     3041 2 -    12755 CT
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1882352 2 +  3513951 CT
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17941 2 -  4077172 CT
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11770 2 -    94492 CT
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22876666 2 + 28711273 ca
i otoGar3.GL873537                 C 0 C 0
e canFam3.chr9                     21504125 15749 + 61074082 I
e dasNov3.JH570468                   562433 27781 -   852752 I
e colAng1.NW_012122154v1            2218876 5961 +  4569836 T
e cerAty1.NW_012006043v1            2008388 115 -  8458610 I
e macFas5.chr16                    28060246 801 - 80997621 M

a score=7802.000000
s hg38.chr17_JH159148v1_alt           52558 3 +    88070 ttc
s panTro5.chr17                    16363590 3 + 83181570 CTC
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16268645 3 + 83442489 ttc
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115515 3 +  4267968 ttc
i gorGor5.CYUI01015385v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     3043 3 -    12755 CTC
i calJac3.chr5_ACFV01180105_random C 0 I 6
s saiBol1.JH378271                  1882354 3 +  3513951 CTC
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17943 3 -  4077172 CTC
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11772 3 -    94492 CTC
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22876668 3 + 28711273 ttc
i otoGar3.GL873537                 C 0 C 0
e canFam3.chr9                     21504125 15749 + 61074082 I
e manLeu1.NW_012106252v1            2219903 14555 +  4244037 T
e dasNov3.JH570468                   562433 27781 -   852752 I
e colAng1.NW_012122154v1            2218876 5961 +  4569836 T
e chlSab2.chr16                    64967753 19227 + 75148670 T
e cerAty1.NW_012006043v1            2008388 115 -  8458610 I
e macNem1.NW_012014910v1            2117172 10598 + 10377808 I
e macFas5.chr16                    28060246 801 - 80997621 M
e rheMac8.chr16                    30171046 4005 - 77216781 T
e nomLeu3.chrUn_GL397460_1          2103924 6 -  2193130 I

a score=8704.000000
s hg38.chr17_JH159148v1_alt           52561 4 +    88070 tttc
s panTro5.chr17                    16363593 4 + 83181570 TCTC
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16268648 4 + 83442489 tttc
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115518 4 +  4267968 tttc
i gorGor5.CYUI01015385v1           C 0 C 0
s saiBol1.JH378271                  1882357 4 +  3513951 TCTC
i saiBol1.JH378271                 C 0 I 6
s cebCap1.NW_016107543v1              17946 4 -  4077172 TCTC
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11775 4 -    94492 TCTC
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22876671 4 + 28711273 tctc
i otoGar3.GL873537                 C 0 C 0
e canFam3.chr9                     21504125 15749 + 61074082 I
e manLeu1.NW_012106252v1            2219903 14555 +  4244037 T
e dasNov3.JH570468                   562433 27781 -   852752 I
e calJac3.chr5_ACFV01180105_random     3046 6 -    12755 I
e colAng1.NW_012122154v1            2218876 5961 +  4569836 T
e chlSab2.chr16                    64967753 19227 + 75148670 T
e cerAty1.NW_012006043v1            2008388 115 -  8458610 I
e macNem1.NW_012014910v1            2117172 10598 + 10377808 I
e macFas5.chr16                    28060246 801 - 80997621 M
e rheMac8.chr16                    30171046 4005 - 77216781 T
e nomLeu3.chrUn_GL397460_1          2103924 6 -  2193130 I

a score=1911.000000
s hg38.chr17_JH159148v1_alt           52565 1 +    88070 t
s panTro5.chr17                    16363597 1 + 83181570 T
i panTro5.chr17                    C 0 I 2
s panPan2.chr17                    16268652 1 + 83442489 t
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115522 1 +  4267968 t
i gorGor5.CYUI01015385v1           C 0 C 0
s cebCap1.NW_016107543v1              17950 1 -  4077172 T
i cebCap1.NW_016107543v1           C 0 I 995
s aotNan1.NW_018505111v1              11779 1 -    94492 T
i aotNan1.NW_018505111v1           C 0 I 1019
s otoGar3.GL873537                 22876675 1 + 28711273 t
i otoGar3.GL873537                 C 0 C 0
e canFam3.chr9                     21504125 15749 + 61074082 I
e manLeu1.NW_012106252v1            2219903 14555 +  4244037 T
e dasNov3.JH570468                   562433 27781 -   852752 I
e saiBol1.JH378271                  1882361 6 +  3513951 I
e calJac3.chr5_ACFV01180105_random     3046 6 -    12755 I
e colAng1.NW_012122154v1            2218876 5961 +  4569836 T
e chlSab2.chr16                    64967753 19227 + 75148670 T
e cerAty1.NW_012006043v1            2008388 115 -  8458610 I
e macNem1.NW_012014910v1            2117172 10598 + 10377808 I
e macFas5.chr16                    28060246 801 - 80997621 M
e rheMac8.chr16                    30171046 4005 - 77216781 T
e nomLeu3.chrUn_GL397460_1          2103924 6 -  2193130 I

a score=945.000000
s hg38.chr17_JH159148v1_alt           52566 9 +    88070 tagacggag
s panPan2.chr17                    16268653 9 + 83442489 tagacggag
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115523 9 +  4267968 tagacggag
i gorGor5.CYUI01015385v1           C 0 C 0
s otoGar3.GL873537                 22876676 1 + 28711273 t--------
i otoGar3.GL873537                 C 0 C 0
e aotNan1.NW_018505111v1              11780 1019 -    94492 I
e cebCap1.NW_016107543v1              17951 995 -  4077172 I
e canFam3.chr9                     21504125 15749 + 61074082 I
e manLeu1.NW_012106252v1            2219903 14555 +  4244037 T
e dasNov3.JH570468                   562433 27781 -   852752 I
e saiBol1.JH378271                  1882361 6 +  3513951 I
e calJac3.chr5_ACFV01180105_random     3046 6 -    12755 I
e colAng1.NW_012122154v1            2218876 5961 +  4569836 T
e chlSab2.chr16                    64967753 19227 + 75148670 T
e cerAty1.NW_012006043v1            2008388 115 -  8458610 I
e macNem1.NW_012014910v1            2117172 10598 + 10377808 I
e macFas5.chr16                    28060246 801 - 80997621 M
e rheMac8.chr16                    30171046 4005 - 77216781 T
e nomLeu3.chrUn_GL397460_1          2103924 6 -  2193130 I
e panTro5.chr17                    16363598 2 + 83181570 I

a score=4259.000000
s hg38.chr17_JH159148v1_alt           52575 5 +    88070 tcttt
s panPan2.chr17                    16268662 5 + 83442489 tcttt
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115532 5 +  4267968 tcttt
i gorGor5.CYUI01015385v1           C 0 C 0
s cerAty1.NW_012006043v1            2008503 5 -  8458610 tcttg
i cerAty1.NW_012006043v1           I 115 C 0
s chlSab2.chr16                    64948526 5 + 75148670 tcttg
i chlSab2.chr16                    T 19227 C 0
s otoGar3.GL873537                 22876677 5 + 28711273 tattt
i otoGar3.GL873537                 C 0 C 0
e aotNan1.NW_018505111v1              11780 1019 -    94492 I
e cebCap1.NW_016107543v1              17951 995 -  4077172 I
e canFam3.chr9                     21504125 15749 + 61074082 I
e manLeu1.NW_012106252v1            2219903 14555 +  4244037 T
e dasNov3.JH570468                   562433 27781 -   852752 I
e saiBol1.JH378271                  1882361 6 +  3513951 I
e calJac3.chr5_ACFV01180105_random     3046 6 -    12755 I
e colAng1.NW_012122154v1            2218876 5961 +  4569836 T
e macNem1.NW_012014910v1            2117172 10598 + 10377808 I
e macFas5.chr16                    28060246 801 - 80997621 M
e rheMac8.chr16                    30171046 4005 - 77216781 T
e nomLeu3.chrUn_GL397460_1          2103924 6 -  2193130 I
e panTro5.chr17                    16363598 2 + 83181570 I

a score=12063.000000
s hg38.chr17_JH159148v1_alt           52580 7 +    88070 ctctgtc
s panPan2.chr17                    16268667 7 + 83442489 ctctgtc
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115537 7 +  4267968 ctctgtt
i gorGor5.CYUI01015385v1           C 0 C 0
s cerAty1.NW_012006043v1            2008508 7 -  8458610 ctctgtc
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64948531 7 + 75148670 ctctgtc
i chlSab2.chr16                    C 0 C 0
s colAng1.NW_012122154v1            2212915 7 +  4569836 ctctgtc
i colAng1.NW_012122154v1           T 5961 C 0
s otoGar3.GL873537                 22876682 7 + 28711273 ctctttc
i otoGar3.GL873537                 C 0 T 14972
e aotNan1.NW_018505111v1              11780 1019 -    94492 I
e cebCap1.NW_016107543v1              17951 995 -  4077172 I
e canFam3.chr9                     21504125 15749 + 61074082 I
e manLeu1.NW_012106252v1            2219903 14555 +  4244037 T
e dasNov3.JH570468                   562433 27781 -   852752 I
e saiBol1.JH378271                  1882361 6 +  3513951 I
e calJac3.chr5_ACFV01180105_random     3046 6 -    12755 I
e macNem1.NW_012014910v1            2117172 10598 + 10377808 I
e macFas5.chr16                    28060246 801 - 80997621 M
e rheMac8.chr16                    30171046 4005 - 77216781 T
e nomLeu3.chrUn_GL397460_1          2103924 6 -  2193130 I
e panTro5.chr17                    16363598 2 + 83181570 I

a score=247155.000000
s hg38.chr17_JH159148v1_alt           52587 182 +    88070 gcctagactggagtgcagtggcgtgatctcggctcactgcaacgtctgattcctcgattcaggggattcacctgcctcagcctcccgagtagctgccactacagatgccggccaccatgcccggctaatttttg-----------------tatttttagtag----agagagggttt--------cacc--atatttgtcaggctggtctcg
s panPan2.chr17                    16268674 182 + 83442489 gcctaggctggagtgcagtggcgtgatctcggctcactgcaacgtctgattccttggttcaagggattcacctgcctcagcctcccgagtagctgcgactacagatgccggccaccatgcccggctaatttttg-----------------tatttttagtag----agagagggttt--------cacc--atatttgtcaggctggtctcg
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115544 182 +  4267968 gcctaggctggagtgcagtggtgtgatctcggctcactgcaacgtctgattcctccgttcaagggattcacctgcctcagcctcccgagtagctgcgactacagatgccggccaccatgcccggctattttttg-----------------tatttttagtag----acagagggttt--------cacc--atatttgtcaggctggtctcg
i gorGor5.CYUI01015385v1           C 0 C 0
s cerAty1.NW_012006043v1            2008515 182 -  8458610 gcccaggctgaagtgcagtgttgtgaactcggctcactgcaacctccacctcccgggttcaagggattctcctgcctcagcctcccgagtagctgggactacaggttcccgccaccatgcctggcttatttttt-----------------tatttttagtag----agagagggttt--------cacc--aaatttgtcaggctggtttca
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64948538 182 + 75148670 gcccaggctgaagtacagtggtgtgaactcggctcactgcaacctctgcatcccgggttcaaggggttctcctgcctcagactcctgagtagctgggactacaggtgcccgccaccatgcctggctaatttttt-----------------tatttttagtag----agagagggttt--------cacc--aaatttgtcaggctggtttca
i chlSab2.chr16                    C 0 C 0
s colAng1.NW_012122154v1            2212922 182 +  4569836 gcccaggctgaagcgcagtggtgtgaactcggctcactgcaacctccgcctcccgggttcaagggattctcttgcctcagcctcccaagtagctgagactacaggtgtccgccaccatgcctggctaatttttt-----------------tatttttagtag----agagagggttt--------cacc--aaatttatcaggctggtttca
i colAng1.NW_012122154v1           C 0 C 0
s otoGar3.GL873537                  5760901 206 - 28711273 cccttgggtagagtgccatggc---atcacagctcacagcaacatccaactcctgggctcaagcgagtttcctgcctcagcctcccaagtagctgagaccacaggcacccgccacaatgcccagttattttttggttgcagctgtcattgttgtttttggtgggcctgggctggatttgaacccgccaccttaggtgtatgtggctggc----
i otoGar3.GL873537                 n 14972 C 0
e aotNan1.NW_018505111v1              11780 1019 -    94492 I
e cebCap1.NW_016107543v1              17951 995 -  4077172 I
e canFam3.chr9                     21504125 15749 + 61074082 I
e manLeu1.NW_012106252v1            2219903 14555 +  4244037 T
e dasNov3.JH570468                   562433 27781 -   852752 I
e saiBol1.JH378271                  1882361   6 +  3513951 I
e calJac3.chr5_ACFV01180105_random     3046   6 -    12755 I
e macNem1.NW_012014910v1            2117172 10598 + 10377808 I
e macFas5.chr16                    28060246 801 - 80997621 M
e rheMac8.chr16                    30171046 4005 - 77216781 T
e nomLeu3.chrUn_GL397460_1          2103924   6 -  2193130 I
e panTro5.chr17                    16363598   2 + 83181570 I

a score=144666.000000
s hg38.chr17_JH159148v1_alt           52769 75 +    88070 aactcctgaccttgtgagctgcctg------------------cctcggcctcccaaagtgctgatattacaggcatgagccaccatccacag
s panPan2.chr17                    16268856 75 + 83442489 aactcctgaccttgtgagctgcctg------------------cctcggcctcccaaaatgctgatattacaggcatgagccaccATCCACAG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115726 75 +  4267968 aactcctgaccttgtgagctgcccg------------------ccttggcctcccaaagtgctgatattacaggcgtgagccaccatccacag
i gorGor5.CYUI01015385v1           C 0 C 0
s cerAty1.NW_012006043v1            2008697 75 -  8458610 aactcctgacattgtgagctgcctg------------------cctcggcctcccaaagtgctgatattacaagcgtgagccaccgtacacag
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64948720 75 + 75148670 aactcctgacattgtgagctgcctg------------------ccctggcctcccaaagtgctgatgttacaggcgtgagccaccgtgcacag
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2205348 75 +  4244037 AActcctgacattgtgagctgcctg------------------cctcggcctcccaaagtgctgatattacaggcgtgagccaccgtgcacag
i manLeu1.NW_012106252v1           T 14555 C 0
s colAng1.NW_012122154v1            2213104 75 +  4569836 aactcctgacattgtgagctgcctg------------------cctcggcctcccaaagtgctgatattacaggcgtgagccaccgtgcacag
i colAng1.NW_012122154v1           C 0 C 0
s otoGar3.GL873537                  5761107 91 - 28711273 --accttagccacttgagccacaggNNNNNNNNNNNNNNNNNNNNtcagcctcccaagtagctgggaccacaggcacctgccacaatgcccag
i otoGar3.GL873537                 C 0 n 0
e aotNan1.NW_018505111v1              11780 1019 -    94492 I
e cebCap1.NW_016107543v1              17951 995 -  4077172 I
e canFam3.chr9                     21504125 15749 + 61074082 I
e dasNov3.JH570468                   562433 27781 -   852752 I
e saiBol1.JH378271                  1882361  6 +  3513951 I
e calJac3.chr5_ACFV01180105_random     3046  6 -    12755 I
e macNem1.NW_012014910v1            2117172 10598 + 10377808 I
e macFas5.chr16                    28060246 801 - 80997621 M
e rheMac8.chr16                    30171046 4005 - 77216781 T
e nomLeu3.chrUn_GL397460_1          2103924  6 -  2193130 I
e panTro5.chr17                    16363598  2 + 83181570 I

a score=10067.000000
s hg38.chr17_JH159148v1_alt           52844 7 +    88070 ccTCTCC
s panPan2.chr17                    16268931 7 + 83442489 CCTCTCC
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115801 7 +  4267968 ccTCTCC
i gorGor5.CYUI01015385v1           C 0 C 0
s cerAty1.NW_012006043v1            2008772 7 -  8458610 ccTTTAT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64948795 7 + 75148670 ccTTTAT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2205423 7 +  4244037 ccTTTAT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2213179 7 +  4569836 ccTTTAT
i colAng1.NW_012122154v1           C 0 C 0
s otoGar3.GL873537                 22861717 7 + 28711273 tctcttt
i otoGar3.GL873537                 T 14972 C 0
e aotNan1.NW_018505111v1              11780 1019 -    94492 I
e cebCap1.NW_016107543v1              17951 995 -  4077172 I
e canFam3.chr9                     21504125 15749 + 61074082 I
e dasNov3.JH570468                   562433 27781 -   852752 I
e saiBol1.JH378271                  1882361 6 +  3513951 I
e calJac3.chr5_ACFV01180105_random     3046 6 -    12755 I
e macNem1.NW_012014910v1            2117172 10598 + 10377808 I
e macFas5.chr16                    28060246 801 - 80997621 M
e rheMac8.chr16                    30171046 4005 - 77216781 T
e nomLeu3.chrUn_GL397460_1          2103924 6 -  2193130 I
e panTro5.chr17                    16363598 2 + 83181570 I

a score=4095.000000
s hg38.chr17_JH159148v1_alt           52851 1 +    88070 T
s panTro5.chr17                    16363600 1 + 83181570 T
i panTro5.chr17                    I 2 C 0
s panPan2.chr17                    16268938 1 + 83442489 T
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115808 1 +  4267968 T
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103930 1 -  2193130 T
i nomLeu3.chrUn_GL397460_1         I 6 C 0
s cerAty1.NW_012006043v1            2008779 1 -  8458610 T
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64948802 1 + 75148670 T
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2205430 1 +  4244037 T
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2213186 1 +  4569836 T
i colAng1.NW_012122154v1           C 0 C 0
s otoGar3.GL873537                 22861724 1 + 28711273 t
i otoGar3.GL873537                 C 0 C 0
e aotNan1.NW_018505111v1              11780 1019 -    94492 I
e cebCap1.NW_016107543v1              17951 995 -  4077172 I
e canFam3.chr9                     21504125 15749 + 61074082 I
e dasNov3.JH570468                   562433 27781 -   852752 I
e saiBol1.JH378271                  1882361 6 +  3513951 I
e calJac3.chr5_ACFV01180105_random     3046 6 -    12755 I
e macNem1.NW_012014910v1            2117172 10598 + 10377808 I
e macFas5.chr16                    28060246 801 - 80997621 M
e rheMac8.chr16                    30171046 4005 - 77216781 T

a score=54830.000000
s hg38.chr17_JH159148v1_alt           52852 15 +    88070 TCTATTTAATGAATT
s panTro5.chr17                    16363601 15 + 83181570 TCTTTTTAATGAAGG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16268939 15 + 83442489 TCTATTTAATGAATT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115809 15 +  4267968 TCTATTTAATGAATT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103931 15 -  2193130 TCTTTGTAATGAAGG
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s cerAty1.NW_012006043v1            2008780 15 -  8458610 TCCATTTAATGAAGT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64948803 15 + 75148670 TCCATTTAATGAAGT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2205431 15 +  4244037 TCCATTTAATGAAGT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2213187 15 +  4569836 TCCATTTAATGAAGT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     3052 15 -    12755 TCCTTTGAATGGAGG
i calJac3.chr5_ACFV01180105_random I 6 C 0
s saiBol1.JH378271                  1882367 15 +  3513951 TCCTTTGAATGAAGG
i saiBol1.JH378271                 I 6 C 0
s otoGar3.GL873537                 22861725 15 + 28711273 gctttTCAATGAGGG
i otoGar3.GL873537                 C 0 C 0
e aotNan1.NW_018505111v1              11780 1019 -    94492 I
e cebCap1.NW_016107543v1              17951 995 -  4077172 I
e canFam3.chr9                     21504125 15749 + 61074082 I
e dasNov3.JH570468                   562433 27781 -   852752 I
e macNem1.NW_012014910v1            2117172 10598 + 10377808 I
e macFas5.chr16                    28060246 801 - 80997621 M
e rheMac8.chr16                    30171046 4005 - 77216781 T

a score=1607982.000000
s hg38.chr17_JH159148v1_alt           52867 295 +    88070 AATTAGATGAGTTGAGATGACACCTGATTCATCGTGGAGTTCTAACATGtttaaaacattttcta---ggaattaccattcatttcagaggaa-tgcaaatt-attaatttccaacttgatacattattatattgtaaatacatctatgtccccattacatctatgttagaaaatagaaattaatcccattctctcccaattatatcctcttactcattcccaaagacagctaatcactctgtcaagttgtaatcctatagctaacttttg----gctttaaaaaatattcatgtaaataaaaa
s panTro5.chr17                    16363616 293 + 83181570 AATTAGATGAGTTGAGATGATGCCTGATTCATCATGGAGTTCTAACATGTTTAAAACATTTTCTA---GGTAT-ACCATTCATTTGAGAAGAA-TGCAAATT-ATTAATTTTCAACTTGATATAGTATTATATTGTAAATACATCTATGTCCCCATTACATCTATGTTAGGAAATAGAAATTAATTCCATTCTCTCCCAATTATATGCTCTTACTCTTTCCCAAAGACAGCTAATCACTCTATCA-GTTGTAATCCAGTAGGTAACTTTTG----GTTTTTTAAAGTTTTCATGTGAATAAAAA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16268954 294 + 83442489 AATTAGATGAGTTGAGATGACACCTGATTCATCGTGGAGTTCTAAGATGTTTAAAACATTTTCTA---GGAAT-ACCATTCATTTCAGAGGAA-TGCAAATT-ATTAATTTCCAACTTGATACATTATTATATTGTAAATACATCTATGTCCCCATTACATCTATGTTAGAAAATAGAAATTAATCCCATTCTCTCCCAATTATATCCTCTTATTCATTCCCAAAGACAGCTAATCACTCTGTCAAGTTGTAATCCTGTAGCTAACTTTTG----GCTTTAAAAAATATTCATGTAAATAAAAA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4115824 294 +  4267968 AATTAGATGAGCTGAGATGACACCTGATTCATCGTGGAGTTCTAACACATTTAAAACATTTTCTA---GGAAT-ACCATTCATTTCAGAGGAA-TGCAAATC-ATTAATTTCCAACTTGATACATTATTATATTGTAAATACATCTATGTCCCCATTACCTCTATGTTAGAAAATAGAAATTAATTCCATTCTCTCCCAATTATATCCTCTTACTCATTCCCAAAGACAGCTAATCACTCTGTCAAGTTGTAATCCTGTAGGTAACTTTTG----GCTTTAAAAAATATTCATGTAAATAAAAA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2103946 293 -  2193130 AATTAGATGAGTTGAGATGATGCCTGATTCATCACGGAGTTCTAACATGTTTAAAACGTTTTCTA---GGTGT-ACCATTCATTTGAGAAAAA-TGCAAACT-AGTAATTTTCAACTTGATATAGTATTATATTGTAAATACATCTATGT-CCCATTACATCTATGTTAGGAAATAGAAATTAATCCCATTCTCTCCCAATTTTATGCTCTTACTCATTCCCAAAGACAGCTAATCACTCTATCAAGTTGTAATCCAGTAGGTAACTTTTG----GCTTTTTAAAGTTTTCATGTGAATAAAAA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macNem1.NW_012014910v1            2127770 291 + 10377808 AATTAGATTAGTTGAGATGATACCTGATTCATCATGGAGTTCTAATATGTTTAAACCATTTTCTA---GGTAT-ACCATTCATTTGAGAAAAA-TGCAAATT-ATTAATTTCCAACTTGATATAATATTATATTGTAAATACATCTATGTCCCCATTA---CCAGGTTAGGAAATAGAAATTAATCCCATTCTCTCCTAATTATATCCTCTTACTCATTCCCAAAGACAGCTAATCTCTCTATCAAGTTGTAATCCAGTAGGTAACTTTTG----GCTTTTTAAAGTCTTCATGTGAGTAAAAA
i macNem1.NW_012014910v1           I 10598 C 0
s cerAty1.NW_012006043v1            2008795 294 -  8458610 AATTAGATGAGTTGAGATGACACCTGATTCATCATGGAGTTCTAACATGTTTAAAACATTTTCTA---GATAC-ACCATTCATTTCAGAGGAA-TGCAAATT-ATTAATTTCCAACTTGATACAGTGTTATATTGTAAATACATCTATGTCCCCATTACATCTATGTTAGGAAATAGAAATTAATCTCATTCTCTCCCAATTATATCCTCTTACTCATTCCCAAAGACAGCTAATCACTCTGCTACATTCTAATCCAGTGGGTGACTTTTG----GCTTTAAAAAATGTTTGTGTAAATAAAAA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64948818 294 + 75148670 AATTAGATGAGTTGAGATGACACCTGATTCATCGTGGAGTTCTAACATGTTTAACACATTTTCTA---GATAC-ACCATTCATTTCAGAGGAA-TGTAAATT-ATTAATTTCCAACTTGATACAGTATTATATTGTAAATACATCTATGTCCCCAGTACATCTATGTTAGGAAATAGAAATTAATCTCATTCTCTCCCAATTATATCCTCTTACTCGTTCCCAAAGACAGCTAATCACTCTGTTATGTTCTAATCCAGTAGGTAACTTTTG----GCTTTAAAAAATGTTCATGTAAATAAAAA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2205446 294 +  4244037 AATTAGATGAGTTGAGATGACACCTGATTCATCATGGAGTTCTAACATGTTTAAAACATTTTCTA---GATAC-ACCATTCATTTCAGAGGAA-TGCAAATT-ATTAATTTCCAACTTGATACAGTATTATATTGTAAATACATCTATGTCCCCATTACATCTATGTTAGGAAATAGAAATTAATCTCATTCTCTCCCAATTATATCCTCTTACTCATTCCCAAAGACAGCTAATCACTCTGTTACGTTCTAATCCAGTAGGTAACTTTTG----GCTTTAAAAAATGTTTGTGTAAATAAAAA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2213202 291 +  4569836 AATTAGATGAGTTGAGATGACACCTCATTTATCGGGGAGTTCTAACATGTTTAAAACATTTTCTA---GATAC-ACCATTCATTTCGGAGGAA-TGCAAATT-ATTAATTTCCAACTTTATACAGTATTATATTGTAAATACATCTATGTCCCCATTGCATCTATGTTAGGAAATAGAAATTAGtctcattctctcccaattatatcctcttactcattctcaAA---AGCTAATCACTCTGTTAAGTTCTAATCCAGTAGGTAACTTTTG----GCTTTAAAAAGTGTTCATGTAAATAAAAA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     3067 291 -    12755 AATTAGATGAGTTGAGATGATACCTGATTCATCTTGGAGTTCTGACATGTTTAAAACATTTTTTA---GATAT-ACCATTCACTTCAGAAGAA-TGCAAATT-ATTAATTTCTAACTTGACATAACATTATGTTGTAAACACACCTATGTCCCCATTA---CGAGGTTAGGAAATAGAAATTAATCCCCTTCTCTCCCAATTATATTCTCTTACTCATTCCCAAAAACAGCTAATCACTCTATCAAGTTGTAATCCATTAGGTAAATTTTA----GCTTTTTAAAATTTTCATGTGAATAAAAA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1882382 291 +  3513951 AATTAGATGAGTTGAGATGATACCTGATTCAACTTGGAGTTCTGACATGTTTAAAATATTTTTCA---GGTAT-ACCATTCATTTCAGAAGAA-TGCAAATT-ATTAATTTCTAATTTGATACAGCATTATGTTGTAAACACACCCATGTCCCCATTA---TGAGGTTAGGAAATAGAAATTAATCCCCTTCTTTCCCAATTATGTTCTCTTACTCATTCCCCAAAACAGCTAATCACTCTATCAAGTTGTAATCCATTAGATAAATTTTA----GCTTTTTAAAATTTTCATGTGAATAAAAG
i saiBol1.JH378271                 C 0 C 0
s otoGar3.GL873537                 22861740 292 + 28711273 AATTAGATTAGTTGCAGTGATACCTGATTTGCCTTTGTGATCTAACATATT---AACATTTTGGGGGTGGTAT-ACCACTTTTTAAAAAAGAAGCGCAAATTAACTAATTTCCAGCTATAGAGAATATCACAAAGTGAATACATCCCTGTCACTATAA---CCAAGTTAGG--ATGTAAATTAATTCCCCTCCTTCCAAATTACATCCTCTTACTCATCCCAATAGGTCCCTAATCTCTCTATTGATTTGTAACACTGTAGATACATTTTGAGGTGTTTTTGACA---TTTACGTAAAAGAAAA
i otoGar3.GL873537                 C 0 I 5356
e aotNan1.NW_018505111v1              11780 1019 -    94492 I
e cebCap1.NW_016107543v1              17951 995 -  4077172 I
e canFam3.chr9                     21504125 15749 + 61074082 I
e dasNov3.JH570468                   562433 27781 -   852752 I
e macFas5.chr16                    28060246 801 - 80997621 M
e rheMac8.chr16                    30171046 4005 - 77216781 T

a score=200904.000000
s hg38.chr17_JH159148v1_alt           53162 40 +    88070 ttacagtatttgcttctctatttctTTAGCATAATCAAAA
s panTro5.chr17                    16363909 40 + 83181570 GTATAGTATTTGCTTCTCTATTTCTTTGGCAGAAACAAAA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16269248 40 + 83442489 TTACAGTATTTGCTTCTCTATTTCTTTAGCATAATCAAAA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4116118 40 +  4267968 TTACAGTATTTGCTTCTCTATTTCTTTAGCATAATCAAAA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2104239 40 -  2193130 GTATAGTATTTGCTTCTCTATTTCTTTGGCATAAACAAAA
i nomLeu3.chrUn_GL397460_1         C 0 I 6939
s macNem1.NW_012014910v1            2128061 40 + 10377808 GTGTAGTATTTACTTCTCTATTTCTTTGTCATAAACAAAA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2009089 40 -  8458610 TTATAGTATTTACTTCTCTATTTCTTTGGCATAATCAAAA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64949112 40 + 75148670 TTATAATATTTACTTCTCTATTTCTTTGGCATAATCAAAA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2205740 40 +  4244037 TTATAGTATTTACTTCTCTATTTCTTTGGCATAATCAAAA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2213493 40 +  4569836 TTATAGTATTTGTTTCTCTATTTCTTTGGCATAATCAAAA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     3358 40 -    12755 TGATGGGATTTGCTTCTCTATTTCTTTGGCATAATCAAAA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1882673 40 +  3513951 TTATGGTATTTGTGTCTCTGTATCTTTGGCATAATCAAAA
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              11780 1019 -    94492 I
e cebCap1.NW_016107543v1              17951 995 -  4077172 I
e canFam3.chr9                     21504125 15749 + 61074082 I
e dasNov3.JH570468                   562433 27781 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macFas5.chr16                    28060246 801 - 80997621 M
e rheMac8.chr16                    30171046 4005 - 77216781 T

a score=847467.000000
s hg38.chr17_JH159148v1_alt           53202 168 +    88070 GTAATCgttattgcatagtcactttggactcttcatgtcaggagagcagcagacagagaaaggagttactatttggtgaggggtaattatcctcaagccacatagtgtaggagaatgtatctatagctcaggtgatttactgagtatattaacttactagcagtgcca
s panTro5.chr17                    16363949 168 + 83181570 GTAATCTTTATcgcctagtcattttggactcttcatataagcaaagcagcagacagagaaagtagttactatttggtgagggATAATTACCCTCAAGCCATATAGTGTAGCAGAATATATCTATAGCTCAGGAGATTTACTGAGtgtattaatttactagcactgccc
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16269288 168 + 83442489 GTAATCgttattgcatagtcactttggactcttcatgtcaggagagcagcagacagagaaaggagttactatttggtgaggggtaattatcctcaaaccatatagtgtaggagaatgtatctatagctcaggtgatttactgagtatattaacttactagcagtgcca
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4116158 168 +  4267968 GTAATCgttattgcatagtcactttggactcttcatgtcaggagagcagcagacagagaaaggagttactatttggtgaggggtaattatcctCAAGCCATATAGTGTAGGAGAATGTATCTATAGCTCAGGAGATTTACTGAGtgtattaacttactagcagtgcct
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111218 168 -  2193130 GGAATCGTtatcgcttagtcattttggactcttcctgtcagcagagcagcagacagagaaaggagttactatttggtgaggggtaattatctttaagctataaagTGTAGCAGAATATATCTATAGCTCAGGATACTTAGTAAGtatattaacttactagcactgcca
i nomLeu3.chrUn_GL397460_1         I 6939 C 0
s macNem1.NW_012014910v1            2128101 168 + 10377808 GTAATCCTTATcacctagtaattttggcctcttcctgtcagcagagcagcagacagagaaaggagttactatttggtgaggggtaattatcctTAAGCCATATAGTATAGCAGAATGTATTTATAGCTCAGGATACTTAGTAAGtatattaacttactagcactgcca
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2009129 168 -  8458610 GTAATCCTTATTGCAtagtcactttggactcttcatatcaggagagcagcagacagagaaaggagttactatttggtgaggagtaattatcctcaagccatatagtgtaggagaatatatctatagctcaggagatttacggagtatattaacttgctatcagtgcca
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64949152 168 + 75148670 GTAATCCTTATTGCATAGTCATTTTGGACTCTTCATATCAGGAGAGCAGCAGACAGAGAAAGGAGTTACTATTTGGTGAGGAGTAATTATCCTCAAGCCACATCGTGTAGGAGAATATATCTATAGCTCAGGAGATTTACGGAGtatattaacttgctatcagtgcca
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2205780 168 +  4244037 GTAATCCTTATTGCATAGTcactttggactcttcatatcaggagagcagcagacagagaaaggagttactatttggtgaggagtaattatcctCAAGCCATATAGTGTAGGAGAATATATCTATAGCTCAGGAGATTTACGGAGtatattaacttgctatcagtgccg
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2213533 168 +  4569836 GTAATCCTTATTGCATAGTcactttggactcttcatatcaggagagcagcagacagagaaaggagttactatttggtgaggagtaattatcctcaagccatatagtgtaggagaatatatctatagctcaggagatttatggagtatattaacttgctatcagtgccg
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     3398 162 -    12755 GTAATCgttattgcttagtcattttggactcttcgtgtcagcagaccagcagacagagaaaggagttactatttggtgaggagtaaGTATCCTCCAGCCACCTATTGCAGGAGAA------TATAGCTCAGGAGATTTACTGAAtgtattaatttactagcactgcca
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1882713 161 +  3513951 GTAATCgttattgcttagtcattttggactcttcatgtcagcagaccagcagacagagaaaggag-tactatttggtgaggagtaattatcctcatGCCACCTATTGTAGGAGAA------TATAGCTCAGGAGATTTACTGAGtatattaatttactagcactgcca
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              11780 1019 -    94492 I
e cebCap1.NW_016107543v1              17951 995 -  4077172 I
e canFam3.chr9                     21504125 15749 + 61074082 I
e dasNov3.JH570468                   562433 27781 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macFas5.chr16                    28060246 801 - 80997621 M
e rheMac8.chr16                    30171046 4005 - 77216781 T

a score=444056.000000
s hg38.chr17_JH159148v1_alt           53370 82 +    88070 -tggtaaattactgcaaaccaagtggcttaaatttattttttcacagttccaaaggcctctagtctggaattaagctgttggc
s panTro5.chr17                    16364117 80 + 83181570 -tgataaattactgaaaaa-aagtggcttaaatttatttat-caaagttccgaaggcctcttttctgaaattaaggtgttggc
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16269456 82 + 83442489 -tggtaaattactgcaaaccaagtggcttaaatttattttttcacagttctaaaggcctctagtctggaattaaactgttggc
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4116326 82 +  4267968 -tggtaaattactgcaaaccaagtggcttaaatttattttttcacagtttcgaaggcctctagtctggaattaagctgttggc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111386 67 -  2193130 -taataaattactgtaaaccaagtggcttaaatttagttttttacagt---------------tcggaaattaagatgttggc
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28061047 82 - 80997621 -tgataaattactgcaaaccaagtggcttaaatttattttttcacagttccaaaggcttctagtctgaaattaaggtgttggc
i macFas5.chr16                    M 801 C 0
s macNem1.NW_012014910v1            2128269 67 + 10377808 -tgataaattactgtaaaccaagtggcttaaatttattttttcacagttcca---------------aaattaaggtgtttgc
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2009297 82 -  8458610 -tgataaattactgcaaaccaagtgacttaaatttattttttcacagttccgaaggcttctagtctgaaattaaggtgttggc
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64949320 82 + 75148670 -tgataaattactgcaaaccaagtggcttaaatttattttttcacagttccgaaggcttctagtctgaaattaaggtgttggc
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2205948 82 +  4244037 -tgataaattactgcaaaccaagtggcttaaatttattttttcacagttccgaaggcttctagtctgaaattaaggtgttggc
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2213701 82 +  4569836 -tgataaattactgcaaaccaagtggattaaatttattttttcacagttccgaaggcttctagtctgaaattaaggtattggc
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     3560 83 -    12755 taaacaaattactgcaaaccaagtgacttaaatttgttttgtcacagttccaaaggctactagtctaaaattaaggtgctggc
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1882874 83 +  3513951 taaacaaattactgcaaacaaagcgacttaaatttgttttgtcacagttccgaaggctactagtctaaaattaaggtgttggc
i saiBol1.JH378271                 C 0 I 399
e aotNan1.NW_018505111v1              11780 1019 -    94492 I
e cebCap1.NW_016107543v1              17951 995 -  4077172 I
e canFam3.chr9                     21504125 15749 + 61074082 I
e dasNov3.JH570468                   562433 27781 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e rheMac8.chr16                    30171046 4005 - 77216781 T

a score=29297.000000
s hg38.chr17_JH159148v1_alt           53452 5 +    88070 aatgt
s panTro5.chr17                    16364197 5 + 83181570 aatat
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16269538 5 + 83442489 aatgt
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4116408 5 +  4267968 aatgt
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111453 5 -  2193130 aatgt
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28061129 5 - 80997621 aatgt
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128336 2 + 10377808 aa---
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2009379 5 -  8458610 aatgt
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64949402 5 + 75148670 aatgt
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2206030 5 +  4244037 aatgt
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2213783 5 +  4569836 aatat
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     3643 5 -    12755 aatgt
i calJac3.chr5_ACFV01180105_random C 0 I 396
s saiBol1.JH378271                  1883356 5 +  3513951 aatgt
i saiBol1.JH378271                 I 399 C 0
s cebCap1.NW_016107543v1              18946 5 -  4077172 aatgt
i cebCap1.NW_016107543v1           I 995 C 0
e aotNan1.NW_018505111v1              11780 1019 -    94492 I
e canFam3.chr9                     21504125 15749 + 61074082 I
e dasNov3.JH570468                   562433 27781 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e rheMac8.chr16                    30171046 4005 - 77216781 T

a score=214834.000000
s hg38.chr17_JH159148v1_alt           53457 34 +    88070 tgttttcatctgaagcctgcgagggaagtatctg
s panTro5.chr17                    16364202 34 + 83181570 tgttttcatcggaagactgcgagggaagtatctg
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16269543 34 + 83442489 tgttttcatctgaaggctgcgagggaagtatctg
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4116413 34 +  4267968 tgttttcatctgaaggctgcgagggaagtatctg
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111458 34 -  2193130 tgttttcatctgaagcctgtgagggaagtacctg
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28061134 34 - 80997621 tgttttcatctgaagcctgtgagggaagtatctg
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128338 34 + 10377808 tgttttcatctgaaggctgtgagggaagtgtctg
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2009384 34 -  8458610 tgttttcatctgaaggctgtgagggaaggatctg
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64949407 34 + 75148670 tgttttcatctgaagcctgtgagggaagtatctg
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2206035 34 +  4244037 tgttttcatctgaagcctgtgagggaaggatctg
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2213788 34 +  4569836 tgttttcatctgaagcctgtgagggaagtatctg
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     4044 28 -    12755 tgttttcatctgaggtccatgaggaaaa------
i calJac3.chr5_ACFV01180105_random I 396 C 0
s saiBol1.JH378271                  1883361 28 +  3513951 tgttttcatctgagggctgtgagggaaa------
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              18951 28 -  4077172 tgttttcatctgaagcctatgagggaaa------
i cebCap1.NW_016107543v1           C 0 C 0
e aotNan1.NW_018505111v1              11780 1019 -    94492 I
e canFam3.chr9                     21504125 15749 + 61074082 I
e dasNov3.JH570468                   562433 27781 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e rheMac8.chr16                    30171046 4005 - 77216781 T

a score=2484259.000000
s hg38.chr17_JH159148v1_alt           53491 306 +    88070 ttccaggtctctctccttgacttgtagatgtctatcatttccatgtgtgtttgacataagttttctactatatgcatactgtctctgaatttcccccttgtgtatagatatcagtcatatttaatcagaagcctaattgtttccgatatgaccttttcttatcacataacattttaaatgattctatttgaacatgaattttggaggacacaaattaacccataacactgcagaatctcatagtgtgtccatgcccagtgataaccacaaaacagtaaaaacagtaatcacagcggacagtggtat
s panTro5.chr17                    16364236 305 + 83181570 ttccaggtctctgtccctgacgtgtcgaagtctatcatctccaagtgtgtttgacataatttttctactatatccatactgtctctgaatttctcccttgtggatagaca-cagtcatatttaatcagaggcctaattgtttccaatatgaccttgtcttatcagataacattttagatgattctatttgaatatgaattttgagggacACAAATGAACCCATAACACTGCAGAatctcatagtgtgtccatgcccagtgataaccacaaatgagtaaaaacagcaatcacggtggacaatggtat
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16269577 306 + 83442489 ttccaggtctctctccttgacttgtagatgtctatcatttccatgtgtgtttgacataagttttctactatatgcatactgtctctgaatttcccccttgtgtatggatatcagtcatatttaatcagaagcctaattgtttccaatatgaccttttcttatcacataacattttaaatgattctatttgaacatgaattttggaggacacaaattaacccataacactgcagaatctcatagtgtgtccatgcccagtgataaccacaaaacagtaaaaacagtaatcacagcggacagtggtat
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4116447 299 +  4267968 ttccaggtctctctccttgacttgtaggtgtctatcatttccatgtgtgtttgacataagttttctactatatgcatactgtctctgaatttcccccttgtgtatagatatcagtcatatttaatcagaagcctaattgtttccaatatgaccttatc-------acaacattttaaatgattctatttGAACATGAATTTTGGAGGACACAAATTAACCCGTAACACCGCAGAatctcttagtgtgtccatgcccagtgataaccacaaaacagtaaaaacagtaatcacagccgacagtggtat
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111492 306 -  2193130 ttccaggtctctctccttgacttgttgatgtctatcatttccatgtgcgtttgacataatttttctgttatatgcatactgtctctgaatttcccccttttatatagacatcagtcatatttaatcagaggcctaattgtttccaatatgaccttgtcttatcacataacactttaaatgattctatttGAATATGAGTTTTGGGGGAGAAAAATTAACCCATAAcactggagaatctcatagtgtgtccatgtccagtgataaccagaaatcagtaagaacagcaatcacagtggacagtggtat
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28061168 306 - 80997621 atccaggtctctctccttgacttgtcgatgtctatcatttccatgtgtgtttgacagaatttttctactgtatgcatactgtctttgaattttccccttgtatatagacatcagtcatatttaatcagaggtctaattgtttccaatatgaccttatcttgtcacatagcattttaaatgattctatttgtatatgaattttggaggacacaaattaacccataacaCTGCAGAatctcatagtgcgtccatgcccagtgataaccacagatgagtaagaacagcaatcacagcggacaatggtat
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128372 297 + 10377808 ttccacgtttctctccttgacttgttgatgtctatcatttccatgtgtgtttgacataatttttctactatatgcatactgtctctgaatttcccctttctatgcagacatcagtcatatttaatcagaggaccaattgtttccaatatgactttgtcttaacatgtaacatttcaaatgcttttacttgtgtatgaattttggtggacacaaattaacccataacaCTGGCGAATCTCATAGAGTGTccatgcccaatgataaccacaaatg---------agcaatcccagtggacgatggtat
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2009418 306 -  8458610 ttccaggtctctctccttgacttgtagatgtctatcatttccatgtgtgtttgacataatttttctactatatgcatactgcctgtgaattttccccttgtatatagacatcagtcatatttaatcagaggcctaattgtttccaatatgaccttgtcttgtcacatagcattttaaatgattctatttatatatgaattttggaggacacgaattaacccataacactgcagaatctcatagtgtgtccatgcccagtgataaccacagatgagtaagaacagcaatcacagcggacaatggtat
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64949441 304 + 75148670 ttccaggtctctctccttgacttgttgatgtctatcattccca--tgtgtttgacagaatttttctactatatgcatactgtctgtgaattttccccttgtatatagacatcagtcatatttaatcagaggtctaattgtttccaatatggccttgtcttgtcacatagcattttaaatgattctatttGTGTATGAATTTTGGAGGACACAAATTAACCCATAACACTGCAGAatctcatagtgtgtccatgcccagtgataaccacagatgagtaagaacagcaatcacagcggacaatggtat
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2206069 306 +  4244037 ttccaggtctctctccttgacttgtagatgtctatcatttccatgtgtgtttgacataatttttctactatatgcatactgcctgtgaattttccccttgtatatagacatcggtcatatttaatcagaggcctaattgtttccaatatgaccttgtcttgtcacatagcattttaaatgattctatttATATATGAATTTTGGAGGACACGAATTAACCCATAACACTGCAGAatctcatagtgtgtccatgcccagtgataaccacagatgagtaagaacagcaatcacagcggacaatggtat
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2213822 306 +  4569836 ttccaggtttctctccttgacttgttgatgtctatcatttccatgtgtgtttgacacaatttttctactatatgcatactgtctctgaattttccccttgtatatagacatcagtcatatttaatcagaggcctaattgtttccaatatgaccttgtcttgtcacatagcattttaaatgattctatttgtatatgaattttggaggacacaaattaacccataacactgcagaatctcatagtgtgtccacgcccagtgataactacagatgagtaagaacagcaatcacagcagacaatggtat
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     4072 306 -    12755 ttccagctctctctccttgacttgtagttgtctatcatttccatgtgtgattgacgtaatttttctactatctgcagactgtctctgaatttcccccttttatatagacatcagtcatatttaatcacaggcccaattgtttccaacatgaccttgtcttattatataatatttaaaatgattccatttgaatatgaattttgggggacacaaattaacccataacactggagaatctcatagtgtgtccatacccagtaacaaccacaaatgagtaaaaacgggaatcacagtggacaatggtat
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1883389 304 +  3513951 ttccag--ctctctccttgacttgcagatgtctatcatttccatgtgtgtttgacaacatttttctactatctgcatgctgtctgtgaatttcccccttctatatagacatcagtcatatttaatcacgagcccgattgtttccaatatgaccttgccttattatataacatttaaaatgattctatttgaatatgaattttgagggacACAAATTAACCTGTAAcactggagaatctcatagtgtgtccatgcccagtaataatcacaaataagtaaaaacaacaatcacagtggacaatggtat
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              18979 305 -  4077172 ttccagctctctctccttgacttgtagatgtctatcatttccatgtatgtttgacataatttttctactgtctgcatactgtctctgaatttcccccttttaagtagacatcagtcatatttaatcacaggcccgattgtttccaatatgagctt-tttcattacataatatttaaaatggttctatttGAATATGAACTTTGGGGGACACAAATTAGTCCATAAcactggagaatctcatagtgtgtctgtgcccagtaataaccacaaatgagtaaaaacaggaatcacagtggacaatggtat
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              12799 306 -    94492 ttccagctctctctccttgacttgtagatgtctatcatttccatgtgtgtttggcataatttttctactatctgcatattgtctctgaatttcccccttttatatagacatcagtcatatttaatcacaggcccaattgtttccaatatgaccttatcttattacataacacttaaaatgattctgtttgaatatgaattttgggggacacaaattaacccataacaCCAGAGAatctcgtagtgtgtccatgctcagtaataaccacaaatgagtaaaaacaggaatcacagtggacaatggtat
i aotNan1.NW_018505111v1           I 1019 C 0
e canFam3.chr9                     21504125 15749 + 61074082 I
e dasNov3.JH570468                   562433 27781 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e rheMac8.chr16                    30171046 4005 - 77216781 T

a score=1180490.000000
s hg38.chr17_JH159148v1_alt           53797 150 +    88070 agtaaccagg---ggctcagacccttcaggaaggatgctctgagctactccctca-gg------------------cagttatctagacaaacaagagtgctggccaggggtgaagggagaataggactggtggtaattaatggagcttatgaatctcaggtgCACTGTATT
s panTro5.chr17                    16364541 149 + 83181570 agtaaccagg---ggctcagacccttcaggaaggatgctctgagctactctatca-g-------------------cagttatctagaccaacaagagtgctggccaggggtgaagggaGAATAGAACTCTTGGTAATTAACGGAGTTTATGAAACTTAGGCGCACTGTATT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16269883 150 + 83442489 agtaaccagg---ggctcagacccttcaggaaggatgctctgagctactccctca-gg------------------cagttatctggacaaacaagagtgctggccaggggtgaagggagaataggactggtggtaattaatggagcttatgaatctcaggtgCACTGTATT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4116746 150 +  4267968 agtaaccagg---ggctcagacccttcaggaaggatgctctgagctactccctca-gg------------------cagttatctagacaaacaagagtgctggccaggggtgaagggaGAATAGGACTGGTGGTAATTAATGGAGCTTGTGAATCTCAGGTGCACTGTATT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111798 150 -  2193130 ggtaactaga---ggctcagacccttcaggaaggaagttctgagctactctatca-gg------------------cagttatccagaccaagaagagtgctggccaggggtgaagggagaatagaaccggtggtaattaatggagattgtgaatctcaggtgcactgtact
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28061474 149 - 80997621 agtaactaga---ggctcagacccttcaggaaggacattctgagctactgcctcg-g-------------------cagttatctagagcaacaagagtgctggccaggggtgaaaggagaatagaactggtgggaattaatggagattatgaatctcagGGGCACTGTATT
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128669 148 + 10377808 agtaactaga---ggctcagacccttcaggaaggaagttctgagctacttcttcatg-------------------tggttacctagaccaaga--agtgctggccagggatgaaaggagaatagaactggtggtaattaatggagattgtgaatctcaggtgCACTGTATT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2009724 149 -  8458610 agtaactaga---ggctcagatccttcaggaaggacattctgagctactgcctca-g-------------------cagttatctagaccaacaagagtgctggccaggggtgaaaggagaatagaactggtagtaattaatggagattatgaatctcagGGGCACTGTATT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64949745 149 + 75148670 agtaactaga---ggctcagacccttcaggaaggacattctgagctactgcttcg-g-------------------tagttatctagaccaacaagagtgctggccaggggtgaaaggagaatagaactggtggtaattaatggagattatgaatctcaCAGGCACTGTATT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2206375 149 +  4244037 agtaactaga---ggctcagacccttcaggaaggacattctgagctactgcctcg-g-------------------cagttatctagaccaacaagagtgctggccaggggtgaaaggagaatagaactggtggtaattaatggcgattatgaatctcagGGGCACTGTATT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2214128 149 +  4569836 agtaactaga---ggctcagaccgttcaggaaggatgttctgagctactccctcg-g-------------------cagttatctagaccaacaagagtgctggccaagagtgaaaggagaatagaactggtggtaattaatggagattatgaatctcaggtgcaccgtatt
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     4378 144 -    12755 agtaactaga---ggctcagacgcttcaggaaggaagttctgaggtattccatca-gg------------------cagttatctagaccaacaggagtgctggccaggggtgaagagagaatagaactggtggtaattaatggagttcatgaatctcaggtgcaa------
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1883693 145 +  3513951 agtaactagacttggctcagacacttcaggaaggaagttctgaggtattccatca-gg------------------cagt--tctagaccaacaggagtgctggccaggggtgaagggagaatagaactgatggtaattaacggagttcatgaatctcaggtgCAA------
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              19284 144 -  4077172 agtaactaga---ggctcagatgtttcaggaaggaagttctgaggtattccatca-gg------------------cagtcatctagaccaacaggagtgctggccaggggtgaagggaGAAGAGAACTGGTGGTAATTAATGGAGTTCACAAATCTCGGGTGCAA------
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              13105 144 -    94492 agtaagtaga---ggctcagatgcttcaggaaggaagttctgaagtattccatca-gg------------------cagttatctagaccaacaggagtgctggccagaggtgaagggagaacagaactggtggtaattaatggagttcatgaatctcaggtgCAA------
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     39587518 167 - 61074082 AGTAATCAGA---CACTCAGATCCATTGGACAGGATTATCTGGGTTACTCCATTG-GGACATTATCCAAAATAATAGAAATATCCAAAATAATAGAAGCATTGGCTA-AGATAAAGGAAATATAGGACTACTAGCAAAAGATGGAGACGATGAGTATTCGTTGCACGCTACT
i canFam3.chr9                     T 2106 C 0
e dasNov3.JH570468                   562433 27781 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e rheMac8.chr16                    30171046 4005 - 77216781 T

a score=713103.000000
s hg38.chr17_JH159148v1_alt           53947  91 +    88070 ATAGCAGCAGTAAGTGTAGCTTATTTCA--------TTGGCCTTCAT---TTTATATCTCACTTCCTCCCCCAGCTtttcgtttccttct-----------------------------tcatttttcttt
s panTro5.chr17                    16364690  91 + 83181570 ATAGCAGAAGTAAGTGTAGATTATTTAA--------TTGGCCTTCAT---TTTATATCTCACTTCCTCTCctttcttttcctttccttct-----------------------------tctttcttcttt
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16270033  91 + 83442489 ATAGCAGCAGTAAGTGTAGCTTATTTCA--------TTGGCCTTCAT---TTTATGTCTCACTTCCTCCCCCAGcttttcgtttccttct-----------------------------tcatttttcttt
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4116896  91 +  4267968 ATAGCAGCAGTAAGTGTAGCTTATTTCA--------TTGGCCTTCAT---TTTATATCTCACTTCCTCCCCCAGcttttcatttccttct-----------------------------tcatttttcttt
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111948  91 -  2193130 atagcagcagtaagtgtagcttatttca--------ttggccttcat---tttACATCTCActtcctctcctttcttttcatttccttct-----------------------------tctctctccttc
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28061623  91 - 80997621 ACAGCAGAAGTAAGTGTAGCTTATTTCA--------TTGGCCTTCAT---TTTATATCTCACTTTCTCCCCTAACTTttcctttccttct-----------------------------tcatttttcttt
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128817 119 + 10377808 ACAGCAGCAGTAAGTGTTGC-TATTTCA--------CTGGTATTCAT---TTTACATCTTACttcctctcctttcttttcctttacttcttctctctccttcctttctctctccctccctcccttttcttt
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2009873  91 -  8458610 ACAGCAGAAGTAAGTGTAGCTTATTTCA--------TTGGCCTTCAT---TTTATATCTCACTTTCTCCCCTAActtttcctttccttct-----------------------------tcatttttcttt
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64949894  91 + 75148670 ACAGCAGAAGTAAGTGTAGCTTATTTCA--------TTGGCCTTCAT---TTTATATCTCACTTTCTCCCCTAACTTttcctttccttct-----------------------------tcatttttcttt
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2206524  91 +  4244037 ACAGCAGAGGTAAGTGTAGCTTATTTCA--------TTGGCCTTCAT---TTTATATCTCACTTTCTCCCCTAActtttcctttccttct-----------------------------tcatttttcttt
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2214277  91 +  4569836 atagcagaggtaagtgtagcttatttca--------ttggccttcat---tttataTCTCACTTCCTCCCCTAACTTttcctttccttct-----------------------------tcattattcttt
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     4522  87 -    12755 atagcagcagtaagtgtagcttatttca--------ttgaccttcat---tttatat----cttcctctcctttcttttccttttcttct-----------------------------tccttccttttt
i calJac3.chr5_ACFV01180105_random C 0 I 13
s saiBol1.JH378271                  1883838  91 +  3513951 ATAGCAGCAGTAAGTGCAGCTTATTTCG--------TTGACTTTCAT---TTTATATCTTACttcctctcctttcttttccttttcttct-----------------------------tccttcctttTT
i saiBol1.JH378271                 C 0 I 12
s cebCap1.NW_016107543v1              19428  91 -  4077172 ATAGCAGCAGTAAGTGTCGCTTATTTCA--------CTGACCTTCAT---tttgtatcttacttcctctcctttcttttccttttctcct-----------------------------tccttccttttt
i cebCap1.NW_016107543v1           C 0 I 108
s aotNan1.NW_018505111v1              13249  91 -    94492 ATAGCAGCAGTAAGTGTAGCTTGTTTCA--------TTGACCTTCAT---tttatatcttacttcctctcctttcttttccttttcgtct-----------------------------tccttccttttt
i aotNan1.NW_018505111v1           C 0 I 5
s canFam3.chr9                     39587685  67 - 61074082 ACAGTGCCAGTAGCTGCCGCTTCTTCCA--------TTAGACTTCCT---GTTATA---------CACCCCTTTATTTTCCTCCCCA--------------------------------------------
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   590214  90 -   852752 aTAGTAGCAGTAATTGTAGAATGTTTCACAGTATCTCTTGCCTGCCTGCCTTTGTGcctgccttccttcattccttctgtccttccttct-----------------------------------------
i dasNov3.JH570468                 I 27781 C 0
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e rheMac8.chr16                    30171046 4005 - 77216781 T

a score=16037.000000
s hg38.chr17_JH159148v1_alt           54038 2 +    88070 ct
s panTro5.chr17                    16364781 2 + 83181570 ct
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16270124 2 + 83442489 ct
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4116987 2 +  4267968 at
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112039 2 -  2193130 ct
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28061714 2 - 80997621 ct
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128936 2 + 10377808 ct
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2009964 2 -  8458610 ct
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64949985 2 + 75148670 ct
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2206615 2 +  4244037 ct
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2214368 2 +  4569836 ct
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     4622 2 -    12755 TT
i calJac3.chr5_ACFV01180105_random I 13 C 0
s saiBol1.JH378271                  1883941 2 +  3513951 CT
i saiBol1.JH378271                 I 12 C 0
s aotNan1.NW_018505111v1              13345 2 -    94492 ct
i aotNan1.NW_018505111v1           I 5 I 96
s canFam3.chr9                     39587752 2 - 61074082 CC
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   590304 2 -   852752 ct
i dasNov3.JH570468                 C 0 C 0
e cebCap1.NW_016107543v1              19519 108 -  4077172 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e rheMac8.chr16                    30171046 4005 - 77216781 T

a score=17277.000000
s hg38.chr17_JH159148v1_alt           54040 6 +    88070 ttcttt
s panTro5.chr17                    16364783 6 + 83181570 ttcttt
i panTro5.chr17                    C 0 I 253
s panPan2.chr17                    16270126 6 + 83442489 ttcttt
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4116989 2 +  4267968 tt----
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112041 6 -  2193130 cttcct
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28061716 6 - 80997621 tttgtt
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128938 6 + 10377808 ttcttt
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2009966 6 -  8458610 tttgtt
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64949987 6 + 75148670 tttgtt
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2206617 6 +  4244037 tttgtt
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2214370 6 +  4569836 ttcttt
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     4624 6 -    12755 TACTTt
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1883943 6 +  3513951 TACTTT
i saiBol1.JH378271                 C 0 C 0
s canFam3.chr9                     39587754 6 - 61074082 TTCTTC
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   590306 6 -   852752 tcctct
i dasNov3.JH570468                 C 0 C 0
e aotNan1.NW_018505111v1              13347 96 -    94492 I
e cebCap1.NW_016107543v1              19519 108 -  4077172 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e rheMac8.chr16                    30171046 4005 - 77216781 T

a score=10985.000000
s hg38.chr17_JH159148v1_alt           54046 4 +    88070 -ttct
s panPan2.chr17                    16270132 4 + 83442489 -ttct
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4116991 4 +  4267968 -ttct
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112047 4 -  2193130 -tcct
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28061722 4 - 80997621 -tcct
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128944 4 + 10377808 -ctct
i macNem1.NW_012014910v1           C 0 I 94
s cerAty1.NW_012006043v1            2009972 4 -  8458610 -tcct
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64949993 4 + 75148670 -tcct
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2206623 4 +  4244037 -tcct
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2214376 4 +  4569836 -ccct
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     4630 4 -    12755 -ttct
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1883949 4 +  3513951 -CTCT
i saiBol1.JH378271                 C 0 C 0
s canFam3.chr9                     39587760 3 - 61074082 --TCT
i canFam3.chr9                     C 0 I 1
s dasNov3.JH570468                   590312 4 -   852752 ctcc-
i dasNov3.JH570468                 C 0 C 0
e aotNan1.NW_018505111v1              13347 96 -    94492 I
e cebCap1.NW_016107543v1              19519 108 -  4077172 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e rheMac8.chr16                    30171046 4005 - 77216781 T
e panTro5.chr17                    16364789 253 + 83181570 I

a score=113346.000000
s hg38.chr17_JH159148v1_alt           54050 28 +    88070 tcaatcaccccttc--tccttccttccttc
s panPan2.chr17                    16270136 28 + 83442489 tcaatcaccccttc--ttcttccttccttc
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4116995 28 +  4267968 tcaatcacccctcc--tccttccttccttc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112051 19 -  2193130 t---------cttt--tccttccttccttt
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28061726 28 - 80997621 tcaatcaccccttc--tccttccttccttc
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2009976 28 -  8458610 tcaatcaccccttc--tccttccttccttc
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64949997 28 + 75148670 tcaatcactccttc--tccttccttccttc
i chlSab2.chr16                    C 0 I 1
s manLeu1.NW_012106252v1            2206627 28 +  4244037 tcaatcaccccttc--tccttccttccttc
i manLeu1.NW_012106252v1           C 0 T 7367
s colAng1.NW_012122154v1            2214380 28 +  4569836 tcaatcaccccttc--tccttccttccttc
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     4634 27 -    12755 ttccttcctccctc---ccttccttcctcc
i calJac3.chr5_ACFV01180105_random C 0 I 2
s saiBol1.JH378271                  1883953 27 +  3513951 TTCCTCCCTCCCTC---Cctccctcccttc
i saiBol1.JH378271                 C 0 I 2
s canFam3.chr9                     39587764 29 - 61074082 -CCAACAttcctttcttatttccttccttc
i canFam3.chr9                     I 1 C 0
s dasNov3.JH570468                   590316 25 -   852752 ---ttacctccttc--ctcttccctccctc
i dasNov3.JH570468                 C 0 C 0
e aotNan1.NW_018505111v1              13347 96 -    94492 I
e cebCap1.NW_016107543v1              19519 108 -  4077172 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macNem1.NW_012014910v1            2128948 94 + 10377808 I
e rheMac8.chr16                    30171046 4005 - 77216781 T
e panTro5.chr17                    16364789 253 + 83181570 I

a score=4473.000000
s hg38.chr17_JH159148v1_alt           54078 10 +    88070 --atgttttttt
s panPan2.chr17                    16270164 10 + 83442489 --atgttttttt
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4117023 10 +  4267968 --atgttttttt
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112070 10 -  2193130 --ctttcttctt
i nomLeu3.chrUn_GL397460_1         C 0 I 169
s macFas5.chr16                    28061754  8 - 80997621 --atgttttt--
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2010004  8 -  8458610 --aggttttt--
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64950026  8 + 75148670 --tgtttttt--
i chlSab2.chr16                    I 1 C 0
s manLeu1.NW_012106252v1            2199288  8 +  4244037 --aggttttt--
i manLeu1.NW_012106252v1           T 7367 C 0
s colAng1.NW_012122154v1            2214408  8 +  4569836 --atgttttt--
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     4663  8 -    12755 --cctttctt--
i calJac3.chr5_ACFV01180105_random I 2 I 1
s saiBol1.JH378271                  1883982  8 +  3513951 --ccttcttt--
i saiBol1.JH378271                 I 2 I 1
s dasNov3.JH570468                   590341 10 -   852752 ctttctttct--
i dasNov3.JH570468                 C 0 C 0
e aotNan1.NW_018505111v1              13347 96 -    94492 I
e cebCap1.NW_016107543v1              19519 108 -  4077172 I
e canFam3.chr9                     39587793  0 - 61074082 C
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macNem1.NW_012014910v1            2128948 94 + 10377808 I
e rheMac8.chr16                    30171046 4005 - 77216781 T
e panTro5.chr17                    16364789 253 + 83181570 I

a score=68140.000000
s hg38.chr17_JH159148v1_alt           54088 25 +    88070 ttggttcctttatccct-----tcccttcc
s panPan2.chr17                    16270174 28 + 83442489 --ggttcctttatccctacccttcccttcc
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4117033 24 +  4267968 -tggttcctttatccct-----tcccttcc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112249 25 -  2193130 ttccttcctttctctct-----ctctctct
i nomLeu3.chrUn_GL397460_1         I 169 C 0
s macFas5.chr16                    28061762 25 - 80997621 ttcattcctttttccct-----tcccttcc
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2010012 25 -  8458610 ttcatttctttttccct-----tcccttcc
i cerAty1.NW_012006043v1           C 0 I 5
s chlSab2.chr16                    64950034 25 + 75148670 ttcattcctttttccct-----tcccttcc
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2199296 25 +  4244037 ttcattcctttttccct-----tcccttcc
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2214416 25 +  4569836 ttcattcctttttccct-----tccctttc
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     4672 24 -    12755 ttcctcgcttttcctct-----ctctctt-
i calJac3.chr5_ACFV01180105_random I 1 I 1
s saiBol1.JH378271                  1883991 24 +  3513951 cttctccctctctctct-----cttgctt-
i saiBol1.JH378271                 I 1 I 1
s dasNov3.JH570468                   590351 24 -   852752 -ttcttccttccttcct-----tccAGTCT
i dasNov3.JH570468                 C 0 I 5
e aotNan1.NW_018505111v1              13347 96 -    94492 I
e cebCap1.NW_016107543v1              19519 108 -  4077172 I
e canFam3.chr9                     39587793  0 - 61074082 C
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macNem1.NW_012014910v1            2128948 94 + 10377808 I
e rheMac8.chr16                    30171046 4005 - 77216781 T
e panTro5.chr17                    16364789 253 + 83181570 I

a score=32524.000000
s hg38.chr17_JH159148v1_alt           54113 11 +    88070 ctttccttttc-
s panPan2.chr17                    16270202 11 + 83442489 ctttccttttc-
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4117057 11 +  4267968 ctttccttttc-
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112274 11 -  2193130 ttctctctttc-
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macNem1.NW_012014910v1            2129042 11 + 10377808 ttctttctttc-
i macNem1.NW_012014910v1           I 94 C 0
s cerAty1.NW_012006043v1            2010042 11 -  8458610 cttccctttcc-
i cerAty1.NW_012006043v1           I 5 C 0
s chlSab2.chr16                    64950059 11 + 75148670 cttccctttcc-
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2199321 11 +  4244037 cttcccttccc-
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2214441 11 +  4569836 ctttcttttcc-
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     4697 11 -    12755 cttgcttgctt-
i calJac3.chr5_ACFV01180105_random I 1 I 3
s saiBol1.JH378271                  1884016 11 +  3513951 ctttcttgctt-
i saiBol1.JH378271                 I 1 I 1
s canFam3.chr9                     39587793 10 - 61074082 -tttccttttt-
i canFam3.chr9                     C 0 I 1
s dasNov3.JH570468                   590380 11 -   852752 -TTTTCCTCCCA
i dasNov3.JH570468                 I 5 C 0
e aotNan1.NW_018505111v1              13347 96 -    94492 I
e cebCap1.NW_016107543v1              19519 108 -  4077172 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macFas5.chr16                    28061787  0 - 80997621 C
e rheMac8.chr16                    30171046 4005 - 77216781 T
e panTro5.chr17                    16364789 253 + 83181570 I

a score=6542.000000
s hg38.chr17_JH159148v1_alt           54124 4 +    88070 cttc-
s panPan2.chr17                    16270213 4 + 83442489 cttc-
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4117068 4 +  4267968 cttc-
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112285 4 -  2193130 tttc-
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macNem1.NW_012014910v1            2129053 4 + 10377808 ttct-
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2010053 4 -  8458610 tttc-
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64950070 4 + 75148670 tttc-
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2199332 4 +  4244037 ttcc-
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2214452 4 +  4569836 tttc-
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     4711 3 -    12755 -ctc-
i calJac3.chr5_ACFV01180105_random I 3 I 6
s saiBol1.JH378271                  1884028 3 +  3513951 -ctc-
i saiBol1.JH378271                 I 1 I 6
s aotNan1.NW_018505111v1              13443 1 -    94492 ---c-
i aotNan1.NW_018505111v1           I 96 I 4
s canFam3.chr9                     39587804 4 - 61074082 attc-
i canFam3.chr9                     I 1 I 1
s dasNov3.JH570468                   590391 4 -   852752 -CTCA
i dasNov3.JH570468                 C 0 C 0
e cebCap1.NW_016107543v1              19519 108 -  4077172 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macFas5.chr16                    28061787 0 - 80997621 C
e rheMac8.chr16                    30171046 4005 - 77216781 T
e panTro5.chr17                    16364789 253 + 83181570 I

a score=1560.000000
s hg38.chr17_JH159148v1_alt           54128 4 +    88070 -cttt
s panPan2.chr17                    16270217 4 + 83442489 -cttc
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4117072 4 +  4267968 -cttc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112289 4 -  2193130 -tttc
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macNem1.NW_012014910v1            2129057 3 + 10377808 -ctt-
i macNem1.NW_012014910v1           C 0 I 2
s cerAty1.NW_012006043v1            2010057 3 -  8458610 -ctt-
i cerAty1.NW_012006043v1           C 0 I 2
s chlSab2.chr16                    64950074 3 + 75148670 -ctt-
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2199336 3 +  4244037 -ttt-
i manLeu1.NW_012106252v1           C 0 I 21863
s colAng1.NW_012122154v1            2214456 3 +  4569836 -ctt-
i colAng1.NW_012122154v1           C 0 I 12
s calJac3.chr5_ACFV01180105_random     4720 3 -    12755 -ttt-
i calJac3.chr5_ACFV01180105_random I 6 C 0
s saiBol1.JH378271                  1884037 3 +  3513951 -ttt-
i saiBol1.JH378271                 I 6 C 0
s cebCap1.NW_016107543v1              19627 3 -  4077172 -ttt-
i cebCap1.NW_016107543v1           I 108 C 0
s aotNan1.NW_018505111v1              13448 3 -    94492 -ttt-
i aotNan1.NW_018505111v1           I 4 C 0
s canFam3.chr9                     39587809 3 - 61074082 -ctc-
i canFam3.chr9                     I 1 C 0
s dasNov3.JH570468                   590395 4 -   852752 CCTT-
i dasNov3.JH570468                 C 0 C 0
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macFas5.chr16                    28061787 0 - 80997621 C
e rheMac8.chr16                    30171046 4005 - 77216781 T
e panTro5.chr17                    16364789 253 + 83181570 I

a score=100661.000000
s hg38.chr17_JH159148v1_alt           54132 29 +    88070 cttcctcccttct---ctttttcttttttgtt---
s panPan2.chr17                    16270221 28 + 83442489 cttcctcccttct---ctttttcttttt-gtt---
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4117076 29 +  4267968 cttcctcccttct---ctttttcttttttgtt---
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112293 29 -  2193130 cttccttccttct---ttcttctttctttctt---
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28061787 25 - 80997621 ----cttctctct---ctctttcttttttctt---
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2129062 29 + 10377808 tttctttctttct---ttctttctttctttct---
i macNem1.NW_012014910v1           I 2 C 0
s cerAty1.NW_012006043v1            2010062 29 -  8458610 cttctctctctct---ttcctttttgtttctt---
i cerAty1.NW_012006043v1           I 2 C 0
s chlSab2.chr16                    64950077 26 + 75148670 ---ctctctctct---ttcttttttgtttctt---
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2221202 30 +  4244037 cttccttccctctg--ttgttctgtttttctt---
i manLeu1.NW_012106252v1           I 21863 C 0
s colAng1.NW_012122154v1            2214471 29 +  4569836 cttctctctctct---ttcttttttgtttctt---
i colAng1.NW_012122154v1           I 12 C 0
s calJac3.chr5_ACFV01180105_random     4723 27 -    12755 cttccttttttct---ctc--tctttcttttt---
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1884040 23 +  3513951 cttcctctttttt---ctc------tcttttt---
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              19630 29 -  4077172 cttcctctttttt---ctctctctttcttttt---
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              13451 32 -    94492 cttcctctttttttgcctctctctttcttttt---
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     39587812 29 - 61074082 cttcctATGATTT---CTTCTTCTCTATAATT---
i canFam3.chr9                     C 0 I 1
s dasNov3.JH570468                   590399 29 -   852752 ---CCCTCTGTCC---CCACTTCCGCCTATTAATA
i dasNov3.JH570468                 C 0 C 0
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e rheMac8.chr16                    30171046 4005 - 77216781 T
e panTro5.chr17                    16364789 253 + 83181570 I

a score=309644.000000
s hg38.chr17_JH159148v1_alt           54161 37 +    88070 tcttttctctttcct---cctctcatcttctgttccttct-
s panTro5.chr17                    16365042 40 + 83181570 tcttttctctttccttctcctctcatcttctgtcccttct-
i panTro5.chr17                    I 253 C 0
s panPan2.chr17                    16270249 37 + 83442489 tcttttctctttcct---cctctcatcttctgttccttct-
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4117105 37 +  4267968 tcttttctctttcct---cctctcatcttctgttccttct-
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112322 37 -  2193130 ccttccttttgtcct---ccactcatcttctgtcccttct-
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28061812 40 - 80997621 tcttttctctttcctcctcctctcatcttctgttacttct-
i macFas5.chr16                    C 0 I 6
s macNem1.NW_012014910v1            2129091 40 + 10377808 ttctttctttcttctcctccactcatcttctgtcccttct-
i macNem1.NW_012014910v1           C 0 T 10301
s cerAty1.NW_012006043v1            2010091 40 -  8458610 tcttttctctttcctcttcctctcatcttctgttccttct-
i cerAty1.NW_012006043v1           C 0 I 9
s chlSab2.chr16                    64950103 40 + 75148670 tcttttctctttcctcctcctctcatcttctattccttct-
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2221232 40 +  4244037 tctttcgtctttcctcctcttctcatcttctgtcccttcc-
i manLeu1.NW_012106252v1           C 0 T 5518
s colAng1.NW_012122154v1            2214500 40 +  4569836 tcttttctctttcctcctcctctcatcttctgttccttct-
i colAng1.NW_012122154v1           C 0 I 9
s calJac3.chr5_ACFV01180105_random     4750 40 -    12755 tcttttctctttccttctCCTCTCAtcttctgtcccttct-
i calJac3.chr5_ACFV01180105_random C 0 I 9
s saiBol1.JH378271                  1884063 40 +  3513951 tcttttctctttccttctcctctcctctcctgtcccttct-
i saiBol1.JH378271                 C 0 I 9
s cebCap1.NW_016107543v1              19659 37 -  4077172 tcttttgtctttcctt---ctctcatcttctatcccttct-
i cebCap1.NW_016107543v1           C 0 I 9
s aotNan1.NW_018505111v1              13483 40 -    94492 tcttttccctttccttctcctcccatcttctgtcccttct-
i aotNan1.NW_018505111v1           C 0 I 9
s canFam3.chr9                     39587842 33 - 61074082 tcttctttttctcctcctc-------cttcttttccttat-
i canFam3.chr9                     I 1 C 0
s dasNov3.JH570468                   590428 37 -   852752 ----TTTCTTCGACTCCTCCTTTACTTCTCTTCCCCTTCAT
i dasNov3.JH570468                 C 0 C 0
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e rheMac8.chr16                    30171046 4005 - 77216781 T

a score=992775.000000
s hg38.chr17_JH159148v1_alt           54198 136 +    88070 cttcctct----cctctg---------cttcttccttctttTAGAGCTTGTGGCTCTCCATCACATT-----TAAACAGCAAA------------------------GATTTGACTTGAGTGGAGC-------------TAATTGTAGATCTCAGA-CAAGTTTTCGTAAGTGCGCCCATATATCTTGCATG
s panTro5.chr17                    16365082 145 + 83181570 cttcctctgcttcctctct----tcctcttcttctttcTCCTAGAGCTTGTGGCTGTCCATCCTATT-----TAAGTAGCAAA------------------------TATTTGACTTGAGTGGAGC-------------TAGCTGTAGATCGTAGA-CAAGTTTTCATGACTGCACCCATATATCTTGGATG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16270286 136 + 83442489 cttcctct----cctctg---------cttcttccttcttCTAGAGCTTGTGGTTCTCCATCACATT-----TAAACAGCAAA------------------------GATTTGACTTGAGTGGAGC-------------TAATTGTAGGTCTCAGA-CAAGTTTTCGTAAGTGCGCCCATATGTCTTGCATG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4117142 136 +  4267968 cttcctct----cctctg---------cttcttccttcttCTAGAGCTTGTGGCTCTCCATCACGTT-----TAAACAGCAAA------------------------GATTTGACTTGAGTGGAGC-------------TAATTGTAGGTCTCAGA-CAGGTTTTCGTAAGTGCGCCCATATATCTTGCATG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112359 145 -  2193130 cttactcc----tctttctcaccttctcttcttccttcttCTAGAGCTTGTGGCTGTCCATCACATT-----TAAGTAGCAAA------------------------GGTTTTACTTGAGTGGAGC-------------TAATTGTATATCGTAGA-TAACTCTTCATGACTGCACCCATATATATTAGatc
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28061858 136 - 80997621 cttcctct----cctctg---------cttctttcttcttCTAGAGCTTGTGGCTGTGCATCACATT-----TATACAGCAAA------------------------GATCTGACTTGAGTGGAGG-------------TACTTGTAGGTCTCAGA-CAAGTTTTCATAAGTTCACCCATATATCTTGCATG
i macFas5.chr16                    I 6 C 0
s macNem1.NW_012014910v1            2118830 134 + 10377808 cttcctct----cttcct---------cttcttccttCTCCTAGA-CTTGTGGCTGTCCATCATATT-----TAAGTAGCAAA------------------------TATTTGACTTGAGTGGAGC-------------TAATTGT-GATCGTAGA-CAAGTTTTCATGATTGCATCCCTATATCTTGGATA
i macNem1.NW_012014910v1           T 10301 C 0
s cerAty1.NW_012006043v1            2010140 136 -  8458610 cttcctct----cctctg---------cttctttcttcttctAGAACTTGTGGCTGTACATCACATT-----TATACAGCAAA------------------------GATCTGACTTGAGTGGAGG-------------TACTTGTAGGTCTCAGA-CAAGTTTTCATAAGTTCACCCATATATCTTGCATG
i cerAty1.NW_012006043v1           I 9 C 0
s chlSab2.chr16                    64950143 136 + 75148670 cttcctct----cctctg---------cttctttcttcttCTAGAGCTTGTGGCTGTGCATCACATT-----TATACAGCAAA------------------------GATCTGATGTGAGTGGAGG-------------TACTTGTAGGTCTCAGA-CAAGTTTTCATAAGTTCACCCATATATCTTGCATG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2215754 136 +  4244037 CTTCCTCT----CTTCCT---------CTTCTTCCTTCTCATAGAGCTTGTGGCTGTTCATCGTATT-----TAAGTAGCAAA------------------------TATTTGACTTGAGTGGAGC-------------TAATTGTAGATCGTAGA-CAAGTTTTCATGACTTCACCCATATATCTTGGATA
i manLeu1.NW_012106252v1           T 5518 C 0
s colAng1.NW_012122154v1            2214549 136 +  4569836 cttcctct----cctctg---------cttctttcttcttCTAGAGCTTGTGGCTGTGCATCACATT-----TAAACAGCAAA------------------------GATCTGACTTGAGTGGAGG-------------TAATTGTAGGTCTCAGA-CAAGTTTTCATAAGTTCACTCATATATCTTGcatg
i colAng1.NW_012122154v1           I 9 C 0
s calJac3.chr5_ACFV01180105_random     4799 136 -    12755 cttcctct----cctcct---------cattttccttcctctAGAGCTTGTGGCTGTCCATGACATT-----TAAGTAGCAAA------------------------GATTTGACTTGAGTGGAGC-------------TAATTGTAGACTGTAGA-AAAGTTTTCATGACTGCGCCCATATAACTTGGATC
i calJac3.chr5_ACFV01180105_random I 9 C 0
s saiBol1.JH378271                  1884112 136 +  3513951 cctcctct----cctcct---------ctttttccttctTTTAGAGCTTGTGGCTGTCCATGACATT-----TAAGTAGCAAA------------------------GATCTGACTTGAGTGGAGC-------------TAATTGTAGATTGTAGA-AAAGTTTTCACGACTGCACCCATATAACTTGAATC
i saiBol1.JH378271                 I 9 C 0
s cebCap1.NW_016107543v1              19705 136 -  4077172 cttcctct----cctcct---------ctttttccttcttCTAGAGTTTGTGGCTGTGCATGACATT-----TAAGCAGCAAA------------------------GATTTGACTTGAGTGGAGC-------------TAATTGTAGGTTGTAGA-AAAGTTTTCATGACTGCACCCATATAACTTGGATC
i cebCap1.NW_016107543v1           I 9 C 0
s aotNan1.NW_018505111v1              13532 136 -    94492 cttcctct----ccttct---------ctttttccttcttCTAGAGCTTGTGGTTGTCCATGACATT-----TAAGTAGCAAA------------------------TATCTGACTTGAGTGGAGC-------------TAATTGTAGATTGTAGA-AAAGTTTTCATGACTGCACCCATATAACTTGGatc
i aotNan1.NW_018505111v1           I 9 C 0
s canFam3.chr9                     39587875 125 - 61074082 ------------------------------tcatctttttctAGAAATTGTGGGTCTCCATCACCTT-----GAAAAAACAGA------------------------GATTAGTC-TGAGAGGAACAAAGATGATGTATTCATTGTAGATGATATA-------TTCAATACCTCACTTctatgtgctgagta
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   590465 162 -   852752 CTTCCTTTA---TTTCTT---------ATTCCTTATTTTTCAAAAAATTGTA----TACATGATTTTGAATATGAAAAACAAATTGGGGTAAGTTAACATGGTGTGTGACTCGATCTGTATGGAGG-------------AAAATTTGTATTCTGCATTATGTTTTGATTACC-CACCCAAGTATCTTATATC
i dasNov3.JH570468                 C 0 C 0
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e rheMac8.chr16                    30171046 4005 - 77216781 T

a score=1352748.000000
s hg38.chr17_JH159148v1_alt           54334 131 +    88070 TTAGTGTGCTTGGATTAATTTCCATCTGTCAGAGTCCGCATCTC-------------TGTGGCCAAGGGCTCTT------GT-ATTGCAGCTGTAGAAAGTCATG--------CCACCTGTG-------------------AATGCAACACAgagaaaaacactcaaccaatgattct
s panTro5.chr17                    16365227 131 + 83181570 TTAGTGTGCTTAGATcaatttctatctgtcaaaatctgcatctc-------------tctgcctaagggctctt------gt-attgcagctgcagaaagtcatg--------ccacctgtg-------------------aatgcaacacagagaaaaacactcaaccaatgattct
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16270422 131 + 83442489 TTAGTGTGCTTGGATTAATTTCCATCGGTCAGAGTCCGCATCTC-------------TGTGGCTAAGGGCTCTT------GT-ATTGCAGCTGTAGAAAGTCATG--------CCACCTGTG-------------------AATGCAACACAgagaaaaacactcaaccaatgattct
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4117278 131 +  4267968 TTAGTGTGCTTGGATTAATTTCCATCTGTCAGAGTCCGCATCTC-------------TGTGGCTAAGGGCTCTT------GT-ATTGCAGCTGTAGAAAGTCATG--------CCACCTGTG-------------------AATGCAACACAgagaaaaacactcatccaatgattct
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112504 131 -  2193130 ttagtgtgcttggactaatttccttctgttagaatctgcatctc-------------tgtgcctaagggctctt------gt-attgctgctgtaagaagtcatg--------tcacctgtg-------------------aatgcaacacagagaaaaacactcaaccaatgattct
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30167041 131 - 77216781 TTAATGTGCTTGGATTAatttccatctgtcaaaatctgcatctc-------------tgtgcctaagggctctT------GT-ATTGCAGCTGTAGAAAGTCATG--------CCACCTGTG-------------------AAGGCAACACAGAGAAAAACACTCAACCAGTGATTCT
i rheMac8.chr16                    T 4005 C 0
s macFas5.chr16                    28061994 131 - 80997621 TTAGTGTGCTTGGATTAATTTCCATCTGTCAGAGTCTGCATCTC-------------TATGGCTAAGGGCTCTT------GT-ATTGCAGCTGTAGAAAGTCATG--------TCACCTGTG-------------------AAGGCAACACAgagaaaaacactcaaccaatgattct
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2118964 131 + 10377808 TTAGTGTGCTTGGATTAATTTCCATCTGTCAAAATCTGCATCTC-------------TGTGCCTAAGGGCTCTT------GT-ATTGCAGCTGTAGAAAGTCATG--------CCACCTGTG-------------------AATGCAACACAGAGAAAAACACTCAACCAGTGATTCT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2010276 131 -  8458610 TTAGTGTGCTTGGATTAATTTCCATCTGTCAGAGTCTGCATCTC-------------TGTGGCCAAGGGCTCTT------GT-ATTGCAGCTGTAGAAAGTCATG--------TCACCTGTG-------------------AAGGCAACACAgagaaaaacactcaaccaatgattct
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64950279 131 + 75148670 TTAGTGTGCTTGGATTAATTTCCATCTGTCAGAGTCTGCATCTC-------------TGTGGCCAACGGCTCTT------GT-ATTGCAGCTGTAGAAAGTCATG--------TCACCTGTG-------------------AAGGCAACACAgagaaaaacactcaaccaacgattct
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2215890 131 +  4244037 TTAGTGTGCTTGGATTAATTTCCATCTGTCAAAATCTGCATCTC-------------TGTGCCTAAGGGCTCTT------GT-ATTGCAGCTGTAGAAAGTCATG--------TCACCTGTG-------------------AATGCAACACAGAGGAAAACACTCAACCAGTGATTCT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2214685 131 +  4569836 ttagtgtgcttggattaatttccatctgtcagagtctgcatctc-------------tgtggctaagggctctt------gt-atcgcagctgtagagagtcatg--------tcacctgtg-------------------aaggcaacacagagaaaaacgctcaaccaatgattct
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     4935 124 -    12755 TTAGTGTGCTTGGActaattt-------ccagaatctgcatctc-------------tgtgcctaaggactctt------gt-attgcagctatagaaagtcatg--------tcacctgtg-------------------catgacacacagaggaaaacactcaaccaatgattct
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1884248 131 +  3513951 TTAGTGTGCTTGGAATAatttccatctgccagaatctgcatctc-------------ggtgcctaaggactctt------gt-attgcagctgtagaaagtcatg--------tcacctgtg-------------------catgacacacagagaaaaacactcaaccaatgattct
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              19841 131 -  4077172 TTATTGTGCTTggactaatttccatctgccagaatctgcatctc-------------tgtgcctaaggactctt------ga-attgcagctgtagaaagccatg--------ttacctgtg-------------------catgacacacacagaaaaacactcaaccaatgattct
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              13668 131 -    94492 ttagtgtgcttggactaatttccatctgccagaatctgcatctc-------------tgtgcctaaggactctt------gt-attgcagctgtagaaagtcatg--------tcacctgtg-------------------catgacacacagagaaaaacactcaaccaatgattct
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     39588000 174 - 61074082 ttagtgtcttt----tcaaatccatctgctgaagacttaatccccaatgagatgacatttagagatgggatctttaagaggtaattatatttggatgaggttatgaggatgaaccccctataataggattgatgttcttataatgagagacagagaccaaagctctctcactttctct
i canFam3.chr9                     C 0 I 718
s dasNov3.JH570468                   590627 130 -   852752 TTGGTGTATTCGGATTATCTTCCATCTTCCAATATCTGCACCTC-------------TCCTCCTAACAGCCCTT------TT-TAAACAAGTGTACAAAGTCATG--------TGCCCTGTG-------------------TATATCTTGCTGAGAAAAACAC-AAACCCATATTTTT
i dasNov3.JH570468                 C 0 C 0
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=1474299.000000
s hg38.chr17_JH159148v1_alt           54465 150 +    88070 ggag---agctgatttataaagactctagcttcctcattcctgaagtaggataattct-agctgtgtgtttttcatcatttctgatagttttccctttagtttaagctttagttggtgactgtgat-actgactttatagtgtacccttttctgt
s panTro5.chr17                    16365358 150 + 83181570 ggag---agctgatttataaagactctagcttcctcattcctgaagtaggataattcc-agctatgtgtttttcaccatttctgataattttcactttagtttaagctttagttggtgactgtgat-actgacttaatagtgtacccttttctgt
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16270553 150 + 83442489 ggag---agctgatttataaagactctagcttcctcattcctgaagtaggataattct-aactgtgtgtttttcatcatttctgatagttttccctttagtttaagctttagttggtgactgtgat-actgactttatagtgtgcccttttctgt
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4117409 150 +  4267968 ggag---agctgatttataaagactctagcttcctcattactgaagtaggataattct-agctgtgtgtttttcatcatttctgatagttttccctttagtttaagctttagttggtggctttgat-actgactttatagtgaacccttttctgt
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112635 150 -  2193130 ggag---agctgatttataaagactctagcttcctcattcctgaagtaggataattct-agctgggtgtatttcgtcatttctgataattttccctttagtttaagctttagctggtgactgtgat-actgacttgatagtgtacccttttctgt
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30167172 153 - 77216781 GGAGATTAGTTGATTTATAAAGACTCTAGCTTCCTCATTCCTGAAGTAGGATAATTCT-AGCTGTGTGTTTTTCATCATTTCTGATAATTTTCCCTTTAGTTTAAGCTTTAGTTGGTGACTGTGAT-ACTGACTTAATAGTGAAcccttttctgt
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28062125 150 - 80997621 ggag---agctgatttgtaaagactctagcttcctcattcctgaagtaggataattct-agctgtgtgtttttcaacttttctaacaggtttccctttagtttaaagtttagttggtgactgtgat-actgacttaatagtgaaccctcttctgt
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2119095 147 + 10377808 GGAG---AGCTGATTTATAAAGACTGTAGCT---TCATTCCTGAGGTAGGATAATTCT-AGCTGTGTGTTTTTCATCATTTCTGATAATTTTCGCTTTAGTTTAAGCTTTAGTTGGTGACTGTGAT-ACTGACTTAATAATGAACCCTTTTCTGT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2010407 150 -  8458610 ggag---agctgatgtataaagactctagcttcctcattcctgaagtagggtaattct-agctgtgtgtttttcatcttttctgatagatttccctttagtttaaagtttaattgctcactgtgat-actgacttaatagtgaaccctcttctgt
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64950410 150 + 75148670 ggag---aactgatttataaagactctagcttcctcattcctgaagtagggtaattct-agctgtgtgtttttcatcttttctgatagatttccctttagtttaaagtttaattgctcactgtgat-actgacttaatagtgaaccctcttctgt
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2216021 150 +  4244037 GGAG---AGCTGATTTATAAAGACTCTAGCTTCCTCATTCCTGAAGTAGGATAATTCT-AGCTGTGTGTTTTTCATCATTTCTGATAATTTTCCCTATAGTTTAAGCTTTAGTTGGAGACTGTGAT-ACTGACTTAATAGTGAAcccttttctgt
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2214816 150 +  4569836 ggag---agctgatttataaagactctagcttcctcattcctgaagtaggataattct-agctgtgtgtttttcatcttttctgataggtttccctttagtttaaagtttagttggtgacagtgat-actgccttaatagtgaaccctcttctgt
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     5059 150 -    12755 ggag---tgctgatttatgaagactccagcttcctcattcctgaagtaggataattct-agctgtgtcgttttcatcatttctgacagttttccctttagtttaagcttcagttggtcactctgat-attggcttaatagtgtaccattttctgt
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1884379 150 +  3513951 ggag---tgctgatttatgaagactctagcttcctcattcctgaagtaggataattct-agctgtatctttttcatcatttctgatagttttccctttaatttaagctttagttggtcactgtgat-actggcttaatagtgtaccatttTCTGT
i saiBol1.JH378271                 C 0 I 123
s cebCap1.NW_016107543v1              19972 150 -  4077172 ggag---tgctgatttatgaagactgtagcttcctcattcctgaagtaggataattct-agctgtgtctttttcatcatctctgatagttttccctttagtttaagctttagttggtcagcgtgat-actggcttaatagtgtaccattttctgt
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              13799 145 -    94492 ggag---tgctgatttatgaagactctagcttcctcattcctgaagtaggataattct-agctgtgtcttttccatcatttctgatagttttctc-----tttaagctttagctggtcactgtgat-actggcttaatagtgtaccattttctgt
i aotNan1.NW_018505111v1           C 0 C 0
s dasNov3.JH570468                   590757 132 -   852752 GGAG---AGTTGACTT-TAAAGACCCCA-----------------gtagaataattccaaactttgtgttttacacta--tctgatagcttccattcacgttgaaacttcagttccccactgtgatggcctgcttgatagtgtaattttccctgt
i dasNov3.JH570468                 C 0 C 0
e canFam3.chr9                     39588174 718 - 61074082 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=1648152.000000
s hg38.chr17_JH159148v1_alt           54615 190 +    88070 atcacttccccaattcc-taccggtgtgatctgcacttccc-agtaaactagtttcactggaatcttttcttcaaagtcttttc-gggagaaactaatctatgacaTTATGttaactccctcagcctcaattttcttatctctacgctgggaatattaatacctattctgaaagtttgttaaagagttaataa
s panTro5.chr17                    16365508 186 + 83181570 atcacttccccaatccc-taccagtatgatctgcacttccc-agtaaactagtttcagtggaatttttt-ttcagagtctcttctgggagaaACTCATCTATTACTATACATTAActc----agcctcaaatttttcacctctacaaggggaaaattaatacctattttgaaagtttgttaaatagttaataa
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16270703 190 + 83442489 atcacttccccaattcc-taccggtgtgatctgcacttccc-agtaaactagtttcactggaatcttttcttcaaagtcttttc-aggagaaactaatctatgacaTTATGttaactccctcagcctcaattttcttatctctacgctgggaatattaatacctattctgaaagtttgttaaagagttaataa
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4117559 190 +  4267968 atcacttccccaattcc-taccggtgtgatctgcacttccc-agtaaactagtttcactggaatcttttcttcaaagtcttttc-gggagaaactaatctatgacaTTATGttaactccctcagcctcaattttcttatccctacgctgggaatattaatacctattctgaaagtttgttaaagagttaataa
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112785 191 -  2193130 atcacttctccaatccc-taccagtgtgatctgcacttccc-agtaaactagtttcactggaatgctttcctcagagtctcttctgggagaaactaatctatgacaATACCCCAActctctcaccctcaattttctcatctccacaaagggaatattaatatctattttgaaagtttgttaaagaattaataa
i nomLeu3.chrUn_GL397460_1         C 0 I 305
s rheMac8.chr16                    30167325 191 - 77216781 atcacttccccaatccc-taccagtgtgatctgcacttccc-agtaaactactttcactggaatctttttttcagagtctcctctttgagaaacgaatctatgacaATACGTTCActctctcagcctcaaatttctcatctctacaaagggaacattaatacctattttgaaagtttgttaaagagttaataa
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28062275 191 - 80997621 atcacttccccagttcc-taccaatgtgatctgcatttccc-gataaactagtttccctggaagcttttcttcagagtctcttctgggagaaacttatctacgacaTTATGttaactccttcagtctcaattttcttatctctacgatgggaacattaatgtctattctgaaagtttgttaaagaattagtgg
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2119242 177 + 10377808 ATCGCTTCCCCAATCCC-TAC------------cacttccc-agtaaactactttcactggaatctttttttcagagtctcttctatgagaaactaatctatgacaATACGTTCActctctcagcctcaaatttctcatctctacaaagggaacattaatacctattttgaaagtttgtt--agagttaacaa
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2010557 191 -  8458610 atcacttccccagttcc-taccagtgtaatctgcatttccc-aataaactagtttccctggaatcttttcttcagcgtctcttctgggagaaACTTATCTGTGACATTATGttaactccctcagcctcaattttcttatctctaccatgggaacatgaacacctattctgaaagtttgttaaagaattaatga
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64950560 191 + 75148670 atcacttccccagttcc-taccagtgtaatctgcatttccc-aataaactagtttccctggaatcttttcttcagagtctcttctgggagaaACTTATCTGTGACATTATGttaactccctcagcctcaattttcttatctctaccatgggaacatgaacacctattctgaaagtttgttaaagaattaatga
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2216171 191 +  4244037 atcacttccccaatccc-tatcagtgtgatctgcacttccc-agtaaactactttcactggaatctttttttcagagtctcttctatgagaaactaatctatgacaATACGTTCActctctcagcctcaaatttctcatctctacaaagggaacattaatacttatgttgaaaaattgttaaagagttaataa
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2214966 191 +  4569836 atcacttccccagttcc-taccaatgtgatccgcatttccc-aataaactagtttccctggaatcttttcttcagagtctcttctgggagaaacttatctatgacaTTATGttaactccctcagcctcaattttcttatctctatgatgggaacattaatgcctattctgaaagtttgttaaagaattagtga
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     5209 181 -    12755 atcacttccccaatccc-caccagtgtaatctgcacttcc-----caactgctttcactaggatcctttcctcagtgtctcttctgagagaaactaaactatgacaTTGTAttaactctcttagtctcagttgtctcatctctacgatgagaacattaatacctattttgaaagtttgctaaagagt------
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1884652 181 +  3513951 ----attatacaATccc-taccagtgtaatctgcacttccg-aataaactactttcactagaatcttttcctcagtgtctcttctgagagaaactaaactatgacGTTGTGttaactctcttagcctcagttgtctcatctctatgatgagaacattaatacccattttgaaagtttgctaaagaat------
i saiBol1.JH378271                 I 123 C 0
s cebCap1.NW_016107543v1              20122 185 -  4077172 atcacttcctcaatccc-taccagtgtaaactgcacttccc-aatgaactactttcactagaatcttttcctcagtgtctcttctgagagaaactaaactacgacaTTGTGttaactctcttagcctcagttgtctcatctctacgatgagaacattaatacctattttgaaagtttgctaaaaaat------
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              13944 185 -    94492 atcacttccccaatccc-taccagtgtaatctgcacttcct-aataaactactttcgctagaatcttttcctcagtgtatcttctgagagaaactaaactatgacaTTGTGttaactgtcttagcctcagttgtctcatctgtaccatgagaacattaatacctattttgaaagtttgctaaagaat------
i aotNan1.NW_018505111v1           C 0 C 0
s dasNov3.JH570468                   590889 193 -   852752 gtcacattcccaattccttaacagtgtaatctgcacttcccaaataaatttcttaaacttgaatctttttcttggcattgcacatgggagaaaccatactacggcattactttaactctcttacccttgatttcctcatctctaaaagggagatattaatacctaccttgccagcttctttaagaatttgaga
i dasNov3.JH570468                 C 0 C 0
e canFam3.chr9                     39588174 718 - 61074082 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=522503.000000
s hg38.chr17_JH159148v1_alt           54805 72 +    88070 taatgtacacaaagtgtttag-caaatacccatcctatagcaggcaatcCAGAACATATTAGTG-TTTCTTGTT
s panTro5.chr17                    16365694 65 + 83181570 ta---tacacaaagcatttat-ccagtacccatcatagagcaggcAACACAGAA----TTAGTG-TTTTTTGTT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16270893 72 + 83442489 taatgtacacaaagtgtttag-caaatacccatcctatagcaggcaatcCAGAACATATTAGTG-TTTCTTGTT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4117749 72 +  4267968 taatgtacacaaagtgtttag-caaatactcatcatataacaggcaatcCAGAACATATTAGTG-TTTCTTGTT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2113281 67 -  2193130 taatgtacacaaagcatttaT-CCAATATGTCTCCTATAGCAGGCAGCCCGGAA----TTAGTG-ATT-TTGTT
i nomLeu3.chrUn_GL397460_1         I 305 C 0
s rheMac8.chr16                    30167516 68 - 77216781 taaggtacacaaagcacttag-ccaatacccatccgatagcaggcatcccaga----attagtG-TTTTTTTTT
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28062466 73 - 80997621 taatgtacagaaagcgtttag-caaatgcccatcatatagcaggcaatcCAGAACATATTAGTGTTTTTTTGTT
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2119419 67 + 10377808 taatgtacacaaagcatttag-ccaatacccatcagatagcaggcatcccaga----attagtg--tttttgtt
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2010748 73 -  8458610 taatgtacacaaagcgtttag-caaatgcccaccatatagcaggcaatcCAGAACATATTAGTGTTTGTTTGTT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64950751 73 + 75148670 taatgtacacaaagcgtttag-caaatgcccatcatatagcaggcaatcCAGAACATATTAGTGTTTGTTTGTT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2216362 69 +  4244037 taatgtatgcaaagcacttag-ccaatacccatcagatagcaggcatcccaga----attagtgtttttttgtt
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2215157 73 +  4569836 ttatgtacacaaagtgtttag-caaatgcccatcatatagcaggcaatcCAGAACGTATTAGTGTTTTTTTGTT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     5390 72 -    12755 taatgttcacaaagcatttag-ccaatacccaccatagagtaggcaacccagaacatgctggtG-TTTTTTGTT
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1884833 73 +  3513951 taatgtacgcaaagcatttag-caaatatgcatcatagagtaggccacccagaatatattgCTGTTTTTTTGTT
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              20307 72 -  4077172 taatgtacacaaagcatttag-caAATATGCATCATAGTGTAGGCAACCCAGAATATATTCGTG-TTTTTTGTT
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14129 72 -    94492 tattgtacacaaagcatttag-aaaatacgcatcatagaataggcaacccagaatatattggtG-TTTTTTGTT
i aotNan1.NW_018505111v1           C 0 C 0
s dasNov3.JH570468                   591082 72 -   852752 taatctatacagagcatctagtccaatatcttgtgagcagt-GGAAAACCAGAACATTTTAATT-CTTCATCTT
i dasNov3.JH570468                 C 0 T 57967
e canFam3.chr9                     39588174 718 - 61074082 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=23880.000000
s hg38.chr17_JH159148v1_alt           54877 2 +    88070 CA
s panTro5.chr17                    16365759 2 + 83181570 CA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16270965 2 + 83442489 CA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4117821 2 +  4267968 CA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2113348 2 -  2193130 CA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30167584 2 - 77216781 TA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28062539 2 - 80997621 CA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2119486 2 + 10377808 CA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2010821 2 -  8458610 CA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64950824 2 + 75148670 CA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2216431 2 +  4244037 CA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2215230 2 +  4569836 CA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     5462 2 -    12755 CA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1884906 2 +  3513951 CA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              20379 2 -  4077172 CA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14201 2 -    94492 CA
i aotNan1.NW_018505111v1           C 0 C 0
s dasNov3.JH570468                   533187 2 -   852752 CA
i dasNov3.JH570468                 T 57967 I 96718
e canFam3.chr9                     39588174 718 - 61074082 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=369770.000000
s hg38.chr17_JH159148v1_alt           54879 39 +    88070 GAAAATTACCAATTTTAATGTTGAAGATAGGAATATTTT
s panTro5.chr17                    16365761 39 + 83181570 GAAAATTCCCAAGTTTTATGTTGAAGATAAGAATATTTT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16270967 39 + 83442489 GAAAATTACCTATTTTAATGTTGAAGATAGGAATATTTT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4117823 39 +  4267968 GAAAATTACCAATTTTAATGTTGAAGATAAGAATATTTT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2113350 39 -  2193130 GAAAATTTCTAACTTTAATGTTGAAGATAAGAATATTTT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30167586 39 - 77216781 GAAAATTCCTAATTTTCATGTTGAAGATAAGAATATTTT
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28062541 39 - 80997621 GAAAATTCCCAATTTTAATGTTGAAGATAAGAATATTTT
i macFas5.chr16                    C 0 M 426
s macNem1.NW_012014910v1            2119488 39 + 10377808 GAAAATTCCTAATTTTAACGTTGAAGGTAAGAATATTTT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2010823 39 -  8458610 GAAAATTCCCAAGTTTAATGTTGAAGATAAGAATACTTT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64950826 39 + 75148670 GAAAATTCCCAATTTTAATGTTGAAGATAAGAATACTTT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2216433 39 +  4244037 GAAAACTCCTAATTTTCATGTTGAAGATAAGAATATTTT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2215232 39 +  4569836 GAAAATTTCCAATTTTAATGTTGAAGATAAGAATACTTT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     5464 39 -    12755 GAAAGTTCCTAATTTTAACCTTGAAGATAAGAATGTTTT
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1884908 39 +  3513951 GAAAATTCCTAATTTTAATGTTGAAGATAAGAATATTTT
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              20381 39 -  4077172 GAAAATTCCTAATTTCAATGTTGAAGATAAGGATATTTT
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14203 39 -    94492 GAAAATTCCTAATTTTAATGTTGAAGATAAGAATATTTT
i aotNan1.NW_018505111v1           C 0 C 0
e canFam3.chr9                     39588174 718 - 61074082 I
e dasNov3.JH570468                   533189 96718 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=316998.000000
s hg38.chr17_JH159148v1_alt           54918 47 +    88070 TGTAATAATTAACTAGATCAACTAAATAC-TTTttttcctagctgtat
s panTro5.chr17                    16365800 47 + 83181570 TGTAATAATTAAATAGATCAACTAAATAC-GTTtttttctagctgtat
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16271006 47 + 83442489 TGTAATAATTAACTAGATCAACTAAATAC-TTtttttcctagctgtat
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4117862 48 +  4267968 TGTAATAATTAACTAAATCAACTAAATACTTTTttttcctagctgtat
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2113389 44 -  2193130 TGTAATAATTAACTAGATCAACTAAATAC----ttttcctagcagtat
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30167625 47 - 77216781 TGTAATAATTAACTAGATCAACTGAATAC-ATTtttttctagctgtac
i rheMac8.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2119527 47 + 10377808 TGTAATAATTAACTAGATCAAATAAATGC-ATTtttttctagctgtat
i macNem1.NW_012014910v1           C 0 I 1120
s cerAty1.NW_012006043v1            2010862 46 -  8458610 TGTAATAATTAACTAGATCAACTAAATAC--Ttttttcctatctgtac
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64950865 46 + 75148670 TGTAATAATTAACTAGATCAACTAAATAC--TTttttcctatctgtac
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2216472 46 +  4244037 TGTAATAATTAACTAGATCAACTAAATAC--ATtttttctagctgtac
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2215271 46 +  4569836 TGTAATAATTAACTAGATCAACTAAATAC--Ttttttcctatctgtac
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     5503 45 -    12755 TATAATAATTAAT-GGATCAACTAGATAC--TTttttcctagctgtac
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1884947 41 +  3513951 TATAGTAATTAAC-AGATCAAC----TAC--Ttttttcctagctgtac
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              20420 45 -  4077172 TATAATAGTTAAC-AGATCAACTAAATAC--TTttttcctagctatac
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14242 43 -    94492 TATAATAATTAAG-AGATCAACTAAATAC--ttttt--ctagctgtac
i aotNan1.NW_018505111v1           C 0 C 0
e canFam3.chr9                     39588174 718 - 61074082 I
e dasNov3.JH570468                   533189 96718 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macFas5.chr16                    28062580 426 - 80997621 M

a score=484749.000000
s hg38.chr17_JH159148v1_alt           54965 60 +    88070 tgaggtataattgacaaataaaagttgtatctatttcaggtatacaaggtgatgttctg--------------------a
s panTro5.chr17                    16365847 60 + 83181570 tgaggtataattgacaaacaaaaattgtgtacatttcaggtatacaaggtgatgctctg--------------------a
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16271053 60 + 83442489 tgaggtataattgacaaataaaagttgtatctatttcaggtatacaaggtgatgttctg--------------------a
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4117910 60 +  4267968 tgaggtataattgacaaataaaagttgtatctatttcaggtatacaaggtgatgctctg--------------------a
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2113433 60 -  2193130 tgaggtgtaattgacaaataaaaattgtgtctgtttcaggtatacaaggtgatgctcta--------------------a
i nomLeu3.chrUn_GL397460_1         C 0 T 25005
s rheMac8.chr16                    30167672 60 - 77216781 tgaggtataattgacaaatgaaaattgtgtatatttcaggtatacaaggtgatgctctg--------------------a
i rheMac8.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2120694 60 + 10377808 tgaggtataattgacaaatgaaaattgtgtatatttcaggtatacaaggtgatgctctg--------------------a
i macNem1.NW_012014910v1           I 1120 C 0
s cerAty1.NW_012006043v1            2010908 60 -  8458610 tgaggtataattgacaaatgaaaattgtgtatatttcaggtatacaaggtgatgctctg--------------------a
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64950911 60 + 75148670 tgaggtctaattgacaaataaaaatcgtatctatttcaggtatacaaggtgatgctctg--------------------a
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2216518 60 +  4244037 tgaggtataattgacaaatgaaaattgtgtatatttcaggtatacaaggtgatgctctg--------------------a
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2215317 60 +  4569836 tgaggtataattgacaaataaaaatcgtatctatttcaggtatacaaggtgatgctctg--------------------a
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     5548 69 -    12755 tgaggaataattgacaaataaaaattattcatatttcaggtatacaaggtgat-ctctg----------atatatatata
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1884988 80 +  3513951 tgaggaataactgacaaataaaaattattcatatttcaggtatacaaggtgatgctctgatatatatatatatatatata
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              20465 60 -  4077172 tgaggaataattgacaaataaaaattattcatatttcaggtacacaaggtgatgctctg--------------------a
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14285 60 -    94492 tgaggaataattgacaaataaaaattattcatatttcaggtatacaaggtgatgctctg--------------------a
i aotNan1.NW_018505111v1           C 0 C 0
e canFam3.chr9                     39588174 718 - 61074082 I
e dasNov3.JH570468                   533189 96718 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macFas5.chr16                    28062580 426 - 80997621 M

a score=663890.000000
s hg38.chr17_JH159148v1_alt           55025 85 +    88070 tatatatattccttgtga---ataatatgtttattaggtcacgaagctaccatttccttttaatttttgtggtgtgaacatttaagat
s panTro5.chr17                    16365907 85 + 83181570 tatagatattcattgtga---ataacatatttattaggtcacttagttaccatttcctttttatttttctggtgtgaacatttaagat
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16271113 85 + 83442489 tatatatattccttgtga---ataatatgtttattaggtcacgaagctaccatttccttttaatttttgtggtgtgaacatttaagat
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4117970 85 +  4267968 tatatatattccttgtga---ataatatgtttattaggtcacgaagctaccatttccttttaatttttgtggtgtgaacatttaagat
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2088488 88 -  2193130 tatatatacttattgtgaatcatcatatattccttagctcacatagttaccatttcctttttatttttgtggtgtgaacacttcaaat
i nomLeu3.chrUn_GL397460_1         T 25005 C 0
s rheMac8.chr16                    30167732 85 - 77216781 tatatatattcattgtaa---atagcatatttattaggtcacgtagttaccatttcctttttatttttgtggtgtgaacatttaagat
i rheMac8.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2120754 85 + 10377808 tatatatattcattgtaa---atagcatatttattaggtcacatagttaccatttcctttttatttttgtggtgtggacatttaagat
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2010968 85 -  8458610 tacatatattcattgtga---ataatatatttgttaggtcacttagttaccatttcctttgtatttttgtggtgcgaacatttaagat
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64950971 85 + 75148670 tacatatattcattgtga---ataatatatttgttaggtcacttagttaccatttcctttttatttttgtggtgcgaacatttaagat
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2216578 85 +  4244037 tatatatattcattgtga---atagcatatttactaggtcatgtagttaccatttcctttttatttttgtggtgtgaacattcaagat
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2215377 85 +  4569836 tacatatattcattgtga---ataatatatttcttaggtcacttagttaccatttcctttttatttttgtggtgcgaatatttaagat
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     5617 85 -    12755 tatatatattcattgtga---ataacatctttatcagctcgtgtagtcaccatttcttttttatttttatggtgtgaacatttaagat
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1885068 85 +  3513951 tatatatatacattgtga---attacatctttattagctcacatagataccatttcctttttatttttatgatgtgagcatttaagat
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              20525 85 -  4077172 tatatatattcattgtga---atgacatctttattagctcacgtggttaccatttcctttttatttttatggtgtgaacattgaagat
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14345 85 -    94492 tatatatattcattgtga---ataacatctttattagctcacatagttgccatttcctttttatttttatggtgtgaacatttaagat
i aotNan1.NW_018505111v1           C 0 C 0
e canFam3.chr9                     39588174 718 - 61074082 I
e dasNov3.JH570468                   533189 96718 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macFas5.chr16                    28062580 426 - 80997621 M

a score=793691.000000
s hg38.chr17_JH159148v1_alt           55110 113 +    88070 ctaccttcttggtaaatttcaggtatatgataaag---tgttattaactatagtcacattac----tgtacagtagacatgctgaacttattcatctttcataaatgaTGCTAGTCAAAG
s panTro5.chr17                    16365992 113 + 83181570 ctaccttctcagtaaatttcaggtatatgataaag---tgtttttaactatagtcatattac----tgtacattagacctactgaacttattcatctttcataactgaTGCTAGTCAAAG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16271198 113 + 83442489 ctaccttcttggtaaatttcaggtatatgatgaag---tgttattaactatagtcacattac----tgtacagtagacatgctgaacttattcatctttcataaatgaTGCTAGTCAAAG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4118055 113 +  4267968 ctaccttcttggtaaatttcaggtatatgataaag---tgttattaactatagtcacattac----tgtacagtagacatgctgaacttattcatctttcataaatgaTGCTAGTCAAAG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2088576 116 -  2193130 ctaccttcttagcacatttcaggtataaaataaagcatttttgttaactatagtcacgttgc----tgtacactagatctgcagaactgactcagcttgcataactgaTGTTGGTCAAAG
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30167817 112 - 77216781 ctaccttctcagttaatttcagatatatgataaag---tgtttttcgctatagtcacattac----tgtacattagaaatgctgaacttattcatgtttcataactgaTGCTATTC-AAG
i rheMac8.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2120839 112 + 10377808 gtaacttctcagttaatttcagatatatgataata---tgtttttaactatagtcacattgc----tgtacattagacatgctaaacttattcatctttcataactgaTGCTAGTC-AAG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2011053 113 -  8458610 ctaacttctcggtaaacttcagctatatgataaag---tgtttttaactatagtcacattac----tgtacagtagatgtgctgaactgattcatctttcataactgaTGCTGGTCAAAG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64951056 113 + 75148670 ctaacttcttggtaaacttcagctatatgataaag---tgtttttagctatagtcacattac----tgtacagtagatgtgctgaactgattcatctttcataactgaTGCTGGTCAAAG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2216663 112 +  4244037 ctaccttctcagttaatttcagatatatgataata---tgtttttaactatagtcacattac----tgtacattagaaatgctgaacttattcatctttcataactgaTGCTATTC-AAG
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2215462 107 +  4569836 ctaacttctcggtaaacttcagctatatgataaag---tgtttt------tagtcacattac----tgtacagtagacgtgctgaactgattcatctttcataactgaTGCTGGTCAAAG
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     5702 113 -    12755 ctaccttctcagcaaatttcaagtatatgataaag---tatttttagctgtagtcacattac----cgtacagtagacatgctgagcttattcatcttgcatagctaaTGTTAGTCAAAG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1885153 113 +  3513951 ataacttctgagcaaatttcaggtacacgataaag---tatttttaactgtagtcacattac----tatacagtagacatgctgagcttattcatcttgcatagctaaTGTTAGTCAAAG
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              20610 113 -  4077172 ataccttctcagcaaatttcaggtacatgataaag---tatttttaactatagtcacattac----cgtacagtagacatgctgagcttattcatcttgcgtagctaaTGTTAATCAAAG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14430 112 -    94492 ttactttctcagcaagtttcaggcatatgataaag---catttttaactgcagtcacattac----catacagtagacatgctgagcttatt-atcttgcatagctgaTGTCAGTCAAAG
i aotNan1.NW_018505111v1           C 0 C 0
s dasNov3.JH570468                   629907  73 -   852752 ctagcttcttcaagaatttgagataatctatacag---agcatc------tagtc-caataccttgtgagcagtGGACAAACC-------------------------------------
i dasNov3.JH570468                 I 96718 T 96763
e canFam3.chr9                     39588174 718 - 61074082 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macFas5.chr16                    28062580 426 - 80997621 M

a score=116921.000000
s hg38.chr17_JH159148v1_alt           55223 14 +    88070 AGAATGTCCTAGTT-
s panTro5.chr17                    16366105 14 + 83181570 AGAATGTCCTAGTT-
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16271311 14 + 83442489 AGAATGTCCTAGTT-
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4118168 14 +  4267968 AGAATGTCCTAGTT-
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2088692 15 -  2193130 AGAATGTGATAGTTC
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30167929 14 - 77216781 AGAATGTCCTAGCT-
i rheMac8.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2120951 14 + 10377808 AGAATGTCCTAGTT-
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2011166 14 -  8458610 AGAATGTCCTAGTT-
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64951169 14 + 75148670 AGAATGTCCTAGTT-
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2216775 14 +  4244037 AGAATGTCCTAGTT-
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2215569 14 +  4569836 AGAATGTCCTAGTT-
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     5815 14 -    12755 AGAATGTCCTAGTT-
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1885266 14 +  3513951 AGAATGTCCTAGTA-
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              20723 14 -  4077172 AGAATAGCCTAGTT-
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14542 14 -    94492 AGAATGTCCTAGTT-
i aotNan1.NW_018505111v1           C 0 C 0
e canFam3.chr9                     39588174 718 - 61074082 I
e dasNov3.JH570468                   629980 96763 -   852752 T
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macFas5.chr16                    28062580 426 - 80997621 M

a score=396915.000000
s hg38.chr17_JH159148v1_alt           55237 53 +    88070 TTCATCTCCTTTA---------CTTCAACCCTGAACGATGATCACAGTAAGTGGC-CGTTGTC
s panTro5.chr17                    16366119 53 + 83181570 TTCATCTCCTTTA---------CTTCATCCCTGAACGATGATGACAGTAGGTGGC-TGTTGTC
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16271325 53 + 83442489 TTCATCTCCTTTA---------CTTCATCCCTGAACGATGATCACAGTAAGTGGC-CCTTGTC
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4118182 53 +  4267968 TTCATCTCCTTTA---------CTTCATCCCTGAACGATGATCACAGTAAGTGGC-CGTTGTC
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2088707 53 -  2193130 TTCAGCTTCTTTA---------CCCCATTATGCAACAACTATCACAGTCAGTGGC-TTTTGTC
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30167943 53 - 77216781 TTCATCTCCTTTA---------CTTCATCCCTGAACGATGATCACAGTAAGTGGC-CGTTATC
i rheMac8.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2120965 53 + 10377808 TTCATCTCCTTTA---------CTTCATCCCTGAATGATGATCACAGTAAGTGGC-CGTTATC
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2011180 53 -  8458610 TTCATCTCCTTTA---------TTTCATCACCAAACGATGATCACAGTAAGCAGC-CTTCGTC
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64951183 53 + 75148670 TTCATCTCCTTTA---------TTTCATCACCAAATGATGATTACAGTAAGTGGC-CTTCGTC
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2216789 53 +  4244037 TTCATCTCCTTTA---------CTTCACCCCTGAACGATGATCACAGTAAGTGGC-CGTTATC
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2215583 53 +  4569836 TTCATCTCCTTTA---------TTTCATCACCGAGCGATGATCACAGTAAGCGGC-CTTCGTC
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     5829 53 -    12755 CTCATCTCCTTTA---------CTTCATCACTGAACGATGATCACCGTAAGCGGT-CCTTGTC
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1885280 53 +  3513951 CTCCTCTCCTTTA---------TTTCATCACTGAACAATGATCACAGTAAGTGGC-CTTTGTC
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              20737 53 -  4077172 TTCATCTCCTTTA---------CTTCATCACTGAACGTTGATCACAGTAACTGGC-CTTTGTC
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14556 53 -    94492 CTTATCTCATTTA---------CTTCATCACTAAACGATGATCACAGTAAGCGGC-CTTTGTC
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     39588892 58 - 61074082 TTCCTCACCTCTGAATGCAAACCCCCATCTCTGAATGAC-----CAGCAGGAGGCACAACTGG
i canFam3.chr9                     I 718 C 0
e dasNov3.JH570468                   629980 96763 -   852752 T
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macFas5.chr16                    28062580 426 - 80997621 M

a score=132683.000000
s hg38.chr17_JH159148v1_alt           55290 13 +    88070 TCTTAGCCAAGTC
s panTro5.chr17                    16366172 13 + 83181570 TCTTAGCCAAGTC
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16271378 13 + 83442489 TCTTAGCCAAGTC
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4118235 13 +  4267968 TGTTAGCCAAGTC
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2088760 13 -  2193130 TCTTAGCTGAGTC
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30167996 13 - 77216781 TCTTAGCCAAGTC
i rheMac8.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2121018 13 + 10377808 TCTTAGCCAAGTC
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2011233 13 -  8458610 TCTTAGCCAAGTC
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64951236 13 + 75148670 TCTTAGCCAAGTC
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2216842 13 +  4244037 TCTTAGCCAAGTC
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2215636 13 +  4569836 TCTTAGCCAAGTC
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     5882 13 -    12755 TCTTAGCCAAGTC
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1885333 13 +  3513951 TCTTAGCCAAGTC
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              20790 13 -  4077172 TGTTAGCCAAGTC
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14609 13 -    94492 TCTTAGCCAAGTC
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     39588950 11 - 61074082 TCTTGGC--AGCC
i canFam3.chr9                     C 0 n 0
s dasNov3.JH570468                   533217 13 -   852752 TCTTGACTGACTC
i dasNov3.JH570468                 T 96763 C 0
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macFas5.chr16                    28062580 426 - 80997621 M

a score=721444.000000
s hg38.chr17_JH159148v1_alt           55303  91 +    88070 TTCAGAGCATTCTAGATTCACAGTCTCAGAAGTTGGCATCTGTCATGGAAATCTACATTTTTAGCTGATCAGAGGTAA------------------------TTCTAGCACTCCA
s panTro5.chr17                    16366185  91 + 83181570 TTCAGAGCATTCTAGATTCACAGTCTCAGAAGTTGGCATCTGTCATGGAAATCTACATTGTTAGCTCATCAGAGGTAT------------------------TTCTACCACTCCC
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16271391  91 + 83442489 TTCAGAGCATTCTAGATTCACAGTCTCAGAAGTTGGCATCTGTCATGGAAATCTACATTTTTAGCTGATCAGAGGTAC------------------------TTCTAGCACTCCA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4118248  91 +  4267968 TTCAGAGCATTCTAGATTCATAGTCTCAGAAGTTGGCATCTGTCATGGAAATCTACATTTTTAGCTGATCAGAGGTAC------------------------TTCTAGCACTCCA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2088773  91 -  2193130 TTCTGAGCATTCTAGATACATTGCCTCAGAAGCTGGTGTCTGTCCTGGAAACCTACATTGTTAGCTCCTCAGAGGTAT------------------------TTCTACCACTCCC
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30168009 112 - 77216781 TTCAGAGCA-TCTAGATT--CAGTTTCAAAAGTTGGCATCTGTCATGGAAATCCACATTGTTAGCTCATCAGAGGTATGAGCTCATCAGAGCTCATCAGAGGTACCAGCACTCCC
i rheMac8.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2121031  90 + 10377808 TTCAGAGCA-TCTACATTCACAGTCTCAAAAGTTGGCATCTGTCATGGAAATCCACATTGTTAGCTCATCAGAGGTAT------------------------TTCCACCACTCCC
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2011246  89 -  8458610 TTCAGCGCATTCTAGATT--CAGTCTCAGAAGTTTGCATCTGTCATGGAAATCCCCATTGTTAGCTCATCAGAGGTAC------------------------TTCTAGCACTCCC
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64951249  89 + 75148670 TTCAGCGCATTCTAGATT--CAGTCTCAGAAGTTTGCATCTGTCATGGAAATCCCCATTGTTAGCTCATCAGAGGTAC------------------------TTCTAGCACTCCC
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2216855  90 +  4244037 TTCAGAACA-TCTAGATTCACAGTCTCAAAAGTTGGCATCTGTCATGGAAATCCACACTGTTAGCTCATCAGAGGTAT------------------------TTCCACCACTCCC
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2215649  89 +  4569836 TTCAGCGCATTCTAGATT--CAGTCTCAGAAGTTCGCATCTGTCATGGAAATCTACATTGTTAGCTGATCAGAGGTAC------------------------TTCTAGCACTTCC
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     5895  91 -    12755 TTCAGAGCATTCTAGATTCACAGTCTCAGAAGTCGGCATCTGCCATGGAAATCTACATTGATGGCTCATCAGAGGTAT------------------------TTCTACCGCTCCC
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1885346  91 +  3513951 TTCAGAACATTTTAGATTCACAGTCTCAGAAGTCGGCATCTGTCATGGAAATCTACATAGGTAGCTCATCAGATGTAT------------------------TTCTACCACTCCC
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              20803  91 -  4077172 TTCAGAGCATTCTAGATTCGCAGTATCAGAAGCTGGCATCTGTCATGGAAATCTACATTGGTAGCTCATCAGATATAT------------------------TTCTACCACTCCC
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14622  91 -    94492 TTCAGAGCATTCTAGATTCACAGTCTCAGAAGCTGGCATCTGTCATGGAAATCTACACTGGTAGCTCATCAGAGGTAT------------------------TTCTACCACTCCC
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     21519874  91 + 61074082 TCCAGAGCCTCCTGGAGAGCAAGTCTCCAATGTTGGAGTGTGCCTGGGGCAGGAGCCTTCCTAGCTCTACAAAGGTCC------------------------CTCTAGGGCTCCC
i canFam3.chr9                     I 15749 C 0
s dasNov3.JH570468                   533230  90 -   852752 CTCAAAGCCTTCCAGGCACACAAT-TCTGGATATGGTGTTTTCCCCTTATACAAATACCATTAGCTCATCAGAGATAC------------------------TTTAAAGTCTCTA
i dasNov3.JH570468                 C 0 I 58430
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macFas5.chr16                    28062580 426 - 80997621 M

a score=267939.000000
s hg38.chr17_JH159148v1_alt           55394 31 +    88070 GTGCT-GGTAGGAGGTCCGAAGAAGGTGACCC
s panTro5.chr17                    16366276 31 + 83181570 CTGTT-GGTAGGAGGCCCCAAGAAGGTGCCCC
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16271482 31 + 83442489 ATGCT-GGTAGGAGGTCCGAAGAAGGTGACCC
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4118339 31 +  4267968 ATGCT-GGTAGGAGGTCTGAAGAAGGTGACCC
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2088864 31 -  2193130 ATGCT-GGTAGGAGGTCCCAAGAAGGCGGCCC
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30168121 31 - 77216781 ATGCT-GGTAGGAGATCCCAAGAAGGTGATCC
i rheMac8.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2121121 31 + 10377808 ATGCT-GGTAGGAGGTCCCAAGAAGGTGACCC
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2011335 31 -  8458610 ATGCT-GGTAGGAGGTCCCACGAAGGTGACCC
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64951338 31 + 75148670 ATGCT-GGTAGGAGGTCCCAAGAAGGTGACCC
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2216945 31 +  4244037 ATGCT-GGTAGGAGGTCCCAAGAAGGTGACCC
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2215738 31 +  4569836 ATGCT-GGTAGGAGGTCCCAAGAAGGTGACCC
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     5986 31 -    12755 ATGCT-GGTAGGAGGTCCCAAGAAGGTGACCC
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1885437 32 +  3513951 ATGCTGGGTTGGAGGTCCCAAGAAGGTGACCC
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              20894 31 -  4077172 ATGCT-GGTAGGAGGTCCCAAGAAGGTGACCC
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14713 31 -    94492 ATGCT-GGTAGGAGGTCCCAAGAAGGCGACCC
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     21519965 12 + 61074082 A-----GG---------------AGGTGACCC
i canFam3.chr9                     C 0 C 0
e dasNov3.JH570468                   533320 58430 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macFas5.chr16                    28062580 426 - 80997621 M

a score=812714.000000
s hg38.chr17_JH159148v1_alt           55425 104 +    88070 AGGTCCCCAACTTTTATATTTCTCTCAGAGCCTGTATCAATCAATCTTTCCATGGGTGAATGCTTAGCTTA---CATCGG---TTCAGGACCCAAAGCACTAACC-TCTGT
s panTro5.chr17                    16366307 104 + 83181570 AGGTCCCCAACTTTTCAATTTCTCTCAGAGCCAGCATCAATCAATCCTTTCATGAGTGAATGGTTATCTTA---CATCAG---TTCAGGACCCGAAGCACCAACC-TCTGT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16271513 104 + 83442489 AGGTCCCCAACCTTTATATTTCTCTCAGAGCCTGTATCAATCAATCTTTCCATGGGTGAATGCTTAGCTTA---CGTCGG---TTCAGGACCCAAAGCACTAAAC-TCTGT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4118370 104 +  4267968 AGGTCCCCAACCTTTATATTTCTCTCAGAGCCTGTATCAATCAATCTTTCCATGGGTGAATGCTTAGCTTA---CATCGG---TTCAGGACCCAAAGCACTAACC-TCTGT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2088895 108 -  2193130 AGGTCCCTAACTTTTCTAATTCTCTCAGAGCCAGTATCAATGAATCCCTCCATGACTGAATACTTCAGTTGCATCATCAG---TTCAGGAACAAAAGCACCAATCTTCCAT
i nomLeu3.chrUn_GL397460_1         C 0 I 19134
s rheMac8.chr16                    30168152 104 - 77216781 AGGTCCCCGACTTTTCAATTTCTCTCAGAGCCAGTAGCAATCAATCCTTACATGAGTGAATGCTTATCTTA---CATCAG---TTCAGGACCCGAAGCACCAACC-TCTGT
i rheMac8.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2121152 104 + 10377808 AGGTCCCCGACTTTTCAATTTCTCTCAGAGTCAGCATCAATCAATCCTTACATGAGTGAATGCTTATCTTA---CATCAG---TTCAGGACCCGAAGCACCAACC-TCTGT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2011366 104 -  8458610 AGGTCCCCGACCTTTATATTTCTCTCAGAGCCAGTATCAATCAATCATTCCGTGGGTGAATGCTTAACTTA---CATCAG---TTCAGGACACAAAGTATCAACC-TCTGT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64951369 104 + 75148670 AGGTCCCCGACCTTTATATTTCTCCCAGAGCCAGTATCAATCAATCATTCCGTGGGTGAATGCTTAACTTA---CATCAG---TTCAGGACACAAAGCATCAACC-TCTGT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2216976 104 +  4244037 AGGTCCCCAACTTTTCAATTTCTCTCAGAGTCAGCATCAATCAATCCTCACGCAAGTGAATGCTTATCTTA---CATCAG---TTCAGGACCCGAAGCACCAACC-TCTGT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2215769 104 +  4569836 AGGTCCCCGACCTTTATATTTCTCTCAGAGCCAGTATCAATCAATCATTCCGTGGGTGAATGCTTAGCTTA---CATCAG---TTCAGGACACAAAGCATCAACC-TCTGT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     6017 104 -    12755 AGGTCTCCAATTTTTCTATTTCTCTCAGGGCCACGATTAATCAATCCTTCCATAAGTGAATGCTTCGCCTC---CATCAG---CTCAGGACCAAAAGCACTAACC-TCTGT
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1885469 104 +  3513951 AGGTGCCTGACTTTTCTATTTCTCTCAGGGCCATGATTAATCAATCCTTCCATAAGTGAATGCTTAGCTTG---TATCAG---CTCAGGACCAAAAGCACCAACC-TCTGT
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              20925 104 -  4077172 AGATCCCCGACTTTTCTATTTCTCTCAGAGCCATGATTAATCAATCCTTCCATAAGTGAATGCTTAGCTTG---CATCAG---CTCAGGACCAAAAGCACCAATC-TCTGT
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14744 104 -    94492 AGGTCCCCGACTTTTCTATTTCACTCAGGGCCATGATTAATCAGTCCTTCCATAAGTGAATGCTTAGCTCG---CATCAG---CTCAGGACCGAAAGCACCAACC-TCTGT
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     21519977 103 + 61074082 AGG-GCCTAGGTCTCCTCTTCCTCTCAAAGCCTG----AATCAAACCTCAGATACCTTAGTATCAAGGCAGCACCATTAG---TTCAGGAGCAGAAGTGCCAGCCCTTTGT
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   591750 103 -   852752 AAGTCTCTAGCCCTTCTATTACTCCCA-AGCCAGTACAAGACTAT----ACACTAACGAATGCTGATGTAG---CATCTTTTCTTCATGACAGAATGCACCAGTGTTCTGT
i dasNov3.JH570468                 I 58430 C 0
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macFas5.chr16                    28062580 426 - 80997621 M

a score=1349037.000000
s hg38.chr17_JH159148v1_alt           55529 158 +    88070 CTATTATGACTTCTATGAATGCACAAGTTCTACT---TTGCTCCTTTCTTACATTCTTCTGATTTCCCTGGAAACACAAGTTTTTCATTTCTTTGAATGCTTCCTATTGGCCTCACAA-AATGCAGAAGGCTGTTTCATTCCCTTACTTGGCTCAGAGATTA
s panTro5.chr17                    16366411 158 + 83181570 CTATTATGTCTTCTATGAATGCACAAGTTCTACC---TTGCTCCTTTCTTACATTCTTCTGATTTCCGTGGAAACAGAAGTTTTTCATTTCTTTAGATTCTTCATATTGGCCTCACAA-AATGTGGAAGGTTGTTTTATTCCGTTCCTTAGCTCAGAGATTA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16271617 158 + 83442489 CTATTATGACTTCTATGAATGCACAAGTTCTACT---TTGCTCCTTTCTTACATTCTTCTGATTTCCCTGGAAACACAAGTTTTTCATTTCTTTGAATGCTTCCTATTGGCCTCACAA-AATGCAGAAGGCTGTTTCATTCCCTTACTTGGCTCAGAGATTA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4118474 158 +  4267968 CTATTATGACTTCTATGAATGCACAAGTTCTACT---TTGCTCCTTTCTTACATTCTTCTGATTTCCCTGGAAACACAAGTTTTTCATTTCTTTGAATGCTTCCTATTGGCCTCACAA-AATGCAAAAGGCTGTTTCATTCCCTTACTTGGCTCAGAGATTA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2108137 158 -  2193130 cTATCATGACTTCTATGAATGCAGAAGTTCTACT---TTGCTCCTTTCTTACATTATTTTGATTTCCCTGAAAATACAAGTGTTTTGTTTCTTTAGATGGTTCATATTGTCCTCAAAA-ACTGCAGAAGGTTGTTTCATTCCCTTCCTTCTCTCAGAGATAA
i nomLeu3.chrUn_GL397460_1         I 19134 C 0
s rheMac8.chr16                    30168256 156 - 77216781 CTATCATGACTTCTATGAAGGCACAAGTTCTACT---TTGCTCCTTTCTTACCTTCTTCTGATTTCCCTGGAAACAAAAGTTTTTTGTTTCTTTAGATGCTTCATATTGGCCTCACAA-AATGT-GAAGGTTGTTTTATTCCC-TCCTCGGCTCAGAGATTA
i rheMac8.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2121256 156 + 10377808 CTATCATGACTTCTATGAAGGCACAAGTTCTACT---TTGCTCCTTTCTTGCCTTCTTCTGATTTCCCTGGAAACAAAAGTTTTTTGTTTCTTTAGATGCTTCATATTGGCCTCACAA-AATGT-GAAGGTTGTTTTATTCCC-TCCTCGGCTCAGAGATTA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2011470 158 -  8458610 CTAGTATGACTTCTATGAAGGCACAAGTTCTACT---TTGCTCCTTTCTTACCTTCTTCTGATTTTCCTGGAAACACAAGTTTTTCATTTCTTTAGATGCTTCATATTGGCATCACAA-ATTGCAGAAGGCTGTTTCTTTCCCTTCCTTGGCTCAGAGATTA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64951473 158 + 75148670 CTATTATGACTTCTACGAATGCACAAGTTCTACT---TTGCTCCTTTCTTACATTCTTCTGATTTTCCTGGAAACACAAGTTTTTCATTTCTTTAGATGCTTCATATTGGCATCACAA-AATGCAGAAGACTGTTTCTTTCCCTTCCTTGGCTCAGAGATTA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2217080 156 +  4244037 CTATCATGACTTCTATGAAGGCACAAGTTCTACT---TTGCTCCTTTCTTGCCTTCTTCTGATTTCCCTGGAAGCAAAAGTTTTTTGTTTCTTTAGATGCTTCATATTGGCCTCACAA-AATGT-GAAGGTTGTTTTATTCCC-TCCTCGGCTCAGAGATTA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2215873 158 +  4569836 CTATTATGACTTCTATGAATGCACAAGTTCTACT---TTGCTCCTTTCTTACATTCTTCTGATTTTCCTGGAAACACAAGTCTTTCATTTCTTTAGATGCTTCATATTGGCATCACAA-AATACGGAAGGCTGTTTCTTTCCCTTCCTCAGCTCAGAGATTA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     6121 158 -    12755 CTATCATGGCTTCTACGTATGCACAAGTTCTACT---TTTCTCCTTTCTTACATTCTTCTGATTTCCCTGGAAACACAAGATTTTAGTTTCTTTAGATGCTTCATGTTGGCCTCATGA-AATGGAGAAGTTTGTTTTATTCCCTTCCTTGGCTCAGAGATTA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1885573 154 +  3513951 CTATCATGGCTTCTATGAATGCACAAGTTCTACT---TTTCTCCTTTCTTATGTTCTTCTGATTTCCCTGGAAACACGAGATTTTAGTTTCTGTAGTTGCTTCATGTTGGTCTCACAA-AATGCAGAA----GGTTTATTCCCTTCCTTGGCTCAGAGATCA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              21029 158 -  4077172 CTATCATGGTTTCTAAGAATGCACAAGTTCTACT---TTTCTCCTTTCTTACATTCTTCTGATTTCCCTGAAAACACAAGATTTTAGTTTCTTTGGATGCTTCATGTTGGCCTCACAA-AATGCAGACGGTTGTTTTATTCCCTTCCTTGGCTCAGAGATTA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14848 150 -    94492 CTATCATGGTTTCTATGAATGCACAAGTTCTGCT---TTTCTCTTTTCTTACATTCTTCTGATTTCCCTGGAAACAC--------AGTTTCTTTAGATGCTTCATGTTGGCCTCACAA-AATGCAGAAGGTTGTTTTATTCCCTTCCTTGGCTCAGAGATCA
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     21520080 160 + 61074082 CTATCATGACTCCTATGAATGCCCACATTCTTTTCTCTTTCTTCTTCCTCATATTTGTCCCATCCCCCTAGAA-CAGGCAGCTTTCTTTCCCTCCAATGCTTCACAGTTCCTGCACCA-AATGCCAGAGATTGTTTTGTTCCCTTCTATGATTCAGAGGTCC
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   591853 157 -   852752 CTGTCAAAACTCTGATGAGTGCACGGTTTTT--T---CCACTTTTTCTCCATATTTATTTTTTTCCTATGGAAACATGAGCTTTTATTTCCCTCAAATACTTCATTTTTACCTCAAGAGAACAACGGCAGTTGTTTAGTTTTCTTAGACAGTCTAGAGATTG
i dasNov3.JH570468                 C 0 C 0
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macFas5.chr16                    28062580 426 - 80997621 M

a score=234988.000000
s hg38.chr17_JH159148v1_alt           55687 21 +    88070 TGGATTGTGCCAAG---TCTTACA
s panTro5.chr17                    16366569 21 + 83181570 TGGGTTGTGCCAAG---TCTTACA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16271775 21 + 83442489 TGGATTGTGCCAAG---TCTTACA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4118632 21 +  4267968 TGGATTGTGCCAAG---TCTTACA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2108295 21 -  2193130 TGGATTGTGCCAAG---TCTTACA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30168412 21 - 77216781 TGGATTGTGCCAAG---TCGTACA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28063006 21 - 80997621 TGGATTGTGCCAAG---TCTTACA
i macFas5.chr16                    M 426 C 0
s macNem1.NW_012014910v1            2121412 21 + 10377808 TGGATTGTGCCAAG---TCGTACA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2011628 21 -  8458610 TGGATTGTGCCAAG---TCTTACA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64951631 21 + 75148670 CGGATTGTGCCAAG---TCTTATA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2217236 21 +  4244037 CGGATTGTGCCAAG---TCGTACA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2216031 21 +  4569836 TGGATTGTGCCAAG---TCTTACA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     6279 21 -    12755 TGGATTGTGCCAAG---TCTTACA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1885727 21 +  3513951 TGTATTGTGCCAAG---ACTTACA
i saiBol1.JH378271                 C 0 T 18681
s cebCap1.NW_016107543v1              21187 21 -  4077172 TGGATTGTGCCAAG---TCTTACA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14998 21 -    94492 TGGATTGTGCCAAG---TCTTACA
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     21520240 24 + 61074082 TGCATTACTCCAAGTCATCATACA
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   592010 21 -   852752 TGAATTGATCAAAA---TCACTCA
i dasNov3.JH570468                 C 0 C 0
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=1689891.000000
s hg38.chr17_JH159148v1_alt           55708 199 +    88070 TGCCCATTGTGTAGTTTCTCAATTCTCA-GCTTTGTTCTTACATAATTTCCCTCATAACA-TTACAATTA-GGGGACAAATTGTCTTAATG-TGGCAAAATGTATGGTCTGCATTTTACAAGAAATAACTTAGTTTCATT-TACTTCATCAATAGGTATTCAGGAGATGAAGGCTGTATAAGTATTTTATTTACATGATATTGA
s panTro5.chr17                    16366590 199 + 83181570 TGCCCATTGCATAGTTTCTCAATTCCCA-GCTTTGTTCTTACATAATTTTACTCATAACA-CTTCAAGTA-GGGGACAAATTGTCTTAACG-TGGCATAATGTATGGTCTGTGTTTTACAAGGAATAACTTAGTTTCATT-TACTTTGTCAATAGGTATTCAGGAGACCGATGCTGTATAAGAATTTTATTTACATCACACTGA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16271796 199 + 83442489 TGCCCATTGTGTAGTTTCTCAATTCTCA-GCTTTGTTCTTACATAATTTCCCTCATAACA-TTTCAATTA-GGGGACAAATTGTCTTAATG-TGGCAAAATGTATGGTCTGTATTTTACAAGAAATAACTTAGTTTCATT-TACTTCATCAATAGGTATTCAGGAGATGAAGGCTGTATAAGTATTTTATTTACATGATATTGA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4118653 198 +  4267968 TGCCCATTGTGTAGTTTCTCAATTCTCA-GCTTTGTTCTTACATAATTTCCCTCATAACA-TTTCAATTA-GGGGACAAATTGTCTTAATG-TGGCA-AATGTATGGTCTGTATTTTACAAGAAATAACTTAGTTTCATT-TACTTCATCAATAGGTATTCAGGAGATGAAGGCTGTATAAGTATTTTATTTACATGATACTGA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2108316 195 -  2193130 TGCCCATGGCATACTTTCTCAATTCCCA-GCTTTGTTCT----TAATTTTCCTCATAACA-TTTCAATTA-GGGGACAAATTTTCTTAATG-TGGCATAAGGTACAGTCTGTATTTTACAAGGAATAACTTGGTTTCATT-TACTTTGTCAATAGGTATTCAGGAGACAGAGGCCATATAACAATTTTATTTACATGATATCGA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30168433 199 - 77216781 CGCCCAGTGTGCAGTTTCTCAGTTCTCA-GCTTTGTTCTTAGTTAATTTTCCTCATAAGA-TTTCAAGTA-GGGGACAAATTGTCTTAATG-TGGCATAATGTATGGTCTGTATTTTACAAGGAATAACTTAGTTTCATT-TACTTCATCAATAGGTATTCAGAAGACAGAGGCTGCATAAACATTTTATTTACATGATACTGA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28063027 199 - 80997621 TGCCCATTGAGTAGTTTCTCAATTCCCA-GCTTTGTTCTTACATAATTTTCCTCATAACA-TTTCAATTA-GGGGACAGATGGTCTTAATG-TGGCAAAAGATATGGTCTGTATTTTACAAGAAATAACTCAGTTTCATT-TACTTTGTCAATAGGTATTCAGGAGATGAAGGCTGTATAAGAATTTTATTTACATGATATTGA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2121433 198 + 10377808 CGCCCAGTGTGTAGTTTGTCAGTTCTCA-GCTTTGTTCTTAGTTAATTTTCCTCATAAGA-TTTCAAGTA-GGGGACAAATTGTCTTAATG-TGGCATAATGTATGGTCTGTATGTTACAAGGAATAGCTTAGTTTCATT-TAATTTGTCAATAGGTATCCAGGACA-GGGGGCCGTATAAATATTTTATTTATATGATACCAA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2011649 199 -  8458610 TGCCCATTGAGTAGTTTCTCAATTCCCA-ACTTTGTTCTTACATAATTTTCCTCATAACA-TTTCAATTA-GGGGACAAATTGTCTTAATG-TGGCAAAAGATACGGTCTGTATTTTACAAGAAATAACTTAGTTTCATT-TACTTTGTCAATGGGTATTCAGGAGATGAAGGCTGTATAAGAATTTTATTTGCATGATATCGA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64951652 199 + 75148670 TGCCCATTGAATAGTTTCTCAATTCCCA-GCTTTGTTCTTACATAATTTTCCTCATAACA-TTTCAATTA-GGGGACAAATTGTCTTAATG-TGGCAAAAGATACGGTCTGTATTTTACAAGAAATAACTTAGTTTCATT-TACTTTCTCAATAGGTATTCAGGAGATGAAGGCTGTATAAGAATTTTATTTACATGATATCGA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2217257 198 +  4244037 TGCCCAGTGTGTAGTTTCTCAGTTCTCA-GCTTTGTTCTTAGTTAATTTTCCTCATAAGA-TTTCAAGTA-GGGGACAAATTGTCTTAATG-TGGCATAATGTATGGTCTGTATTTTACAAGGAATAGCTTAGTTTCATT-TAATTTGTCAATAGATATCCAGGACA-GGGGGCCGTATAAATATTTTATTTATATGATACCAA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2216052 199 +  4569836 TGCCCATTGAGTAGTTTCTCAATTCCCA-GTTTTGTTCTTACATAATTTTCCTCATAACA-TTTCAATTA-GGGGACAAATTGTCTTAATG-TGGCATAATGTATGGTCTGTATTTTACAAGAAATAACTTAGTTTCATT-TACTTTGTCAATAGGTATTCAGGAGATGAAGGCTGTATAAGAATTTTATTTACATGATATGGA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     6300 195 -    12755 TGCCCATTGCATAGTTTCTCAATTCCCA-GCTTTGTTCT----TGATTTTCCTCATAACA-TTTCAATTA-GGAGACAGATAGTCTTCATG-TGGCATAATGTGTGGTCTGTATTTTACAAGGAATAACTTAGTTTTCTT-TACTTTGTCAATAGATATTCAGGAGATGAGGGCCATATAAGAATTCTATTTACATGATACCAA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1867067 195 +  3513951 TGCCCACTCGATAGTCCCTCAATCCCTA-AATATGTTTT-ACATAATTTTCCTAGTAACAGTTTGATTTC-AGGGACAATTTGACTTAATG-TTGCTTAATGCATTGTCCACATTTTAGAGGAAATAATTTCGT----TT-TGCTTTGTCAACAGGTATCCAGGAGAGGGAAGCCATATACGAATATTATTTACATGATATAAA
i saiBol1.JH378271                 T 18681 I 6421
s cebCap1.NW_016107543v1              21208 199 -  4077172 TGTCCATTGCGTAGTTTCTCAATTCCCA-GCTTTGTTTTTACTTAATTTTTCTTGTAACA-TTTCAATTA-GTGGACAGATACTCTTCATG-TGGCATAATGTATGGTCTGTATTTTACAAGGAATAACTTAGTTTTATT-TACTTTTTCAATAGATATTCAGGAGATGGGGGCCATATAAGAATTTTATTTACATGATACCAA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              15019 199 -    94492 CGCCCATTGCATAGTTTCTCAATTCCCA-GCTTTGTTCTTACTTAATTTTCCTCATAACG-TTTCAATTA-GGGGACAGATAGTCTTCATG-TGGCATAATGTATGGTCTGTATTTTACAAGGAGTAACTTAGTTTTATT-TAATTTGTCAATAGATATTCAGAAGATGGGAGCCATATAAGAATTTTATCTATATGATACCAA
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     21520264 195 + 61074082 TGCCCACTGCACAGGCGCTTGGTCCGAG-ATCTTCCCCTTCCTTCCTTTTCTTGGGGACA-TGTTGATCATAATGCCAAATTACATTCCAG-CTG----GGGAGCAGGATGTGTTTGGCAGAAAGTTGCCTGATGCCTCTGGACAATGCCAAGAGGTCCTGAGCACCAGGAAGGCATACCAGAAGGGGTCTTCCGTGTCCCT--
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   592031 178 -   852752 TGCCCATTGCACTGTTTTCAGTGTGTCATGATTTTTCCTTATTTAATTTTCTTAGTAATG-ATTTCACCA---AGACAAACTGACTGACAGTTGGTGGAACACAATATCT-TGTTTTA----------------TTTATT-TCCTTTATCCGTCGACATGTGCTGGATGAGGGTCACACTGAATTTTTGCT----CGAGACCAA
i dasNov3.JH570468                 C 0 C 0
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=68960.000000
s hg38.chr17_JH159148v1_alt           55907  9 +    88070 -CAACAAGTT
s panTro5.chr17                    16366789  9 + 83181570 -GAATAAGTT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16271995  9 + 83442489 -CAACAAGTT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4118851  9 +  4267968 -CAATAAGTT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2108511  9 -  2193130 -GAATAAGTT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30168632  9 - 77216781 -GTAAAAGTT
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28063226  9 - 80997621 -GAATAAGTT
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2121631  9 + 10377808 -GAATATGTT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2011848  9 -  8458610 -GAATAAGTT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64951851  9 + 75148670 -GAATAAGTT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2217455  9 +  4244037 -GAATAAGTT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2216251  9 +  4569836 -GAATAAGTT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     6495  9 -    12755 -GAATAAGTC
i calJac3.chr5_ACFV01180105_random C 0 C 0
s cebCap1.NW_016107543v1              21407  9 -  4077172 -GAATAAGTC
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              15218  9 -    94492 -GAATAAGTC
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     21520459  9 + 61074082 -CAATGTGTG
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   592209 10 -   852752 GGAGCAGGTC
i dasNov3.JH570468                 C 0 C 0
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e saiBol1.JH378271                  1867262 6421 +  3513951 I

a score=1776436.000000
s hg38.chr17_JH159148v1_alt           55916 227 +    88070 TCTTCAGATGAGACTCTCTCTCATGAGTCCACAATAAATTCCCAAGCTTTTTTTGATGTAGATGAATTGAATGAGTGGCTGGTCAGAGGCTGAGACA---AAAAGAGAT-CCCTGCATTCAGGGCAGCCATTAAATGCAGTCCCTGCTGCCATATCACGCAGCTGTTTCTCACTGAGGTGTGGGAAA-----TTGGGAA---TT----TTT-----TGT-----A----AACAAAAACGTTATCTGCAAATATAAGA
s panTro5.chr17                    16366798 221 + 83181570 TCTTCAGATGAGGCTCCGTCTCCTGAGTCCACAATACATTCTCAAGCATTTTTTGATGCATATGAATGGAATGAATGGCTGGTCAGAGGCTCAGACA---AAA--AGAT-CTCTGCATTCAGGGCAGCCGTTAAA-------------GGCATATCATTCAGCCTTTGCTCACTGAGGTGTGGGGAAC-TACTTCGGGA---TT----TTTTTGTGTGT-----G----AACAAAAGTGTTATCTGCAAATATGTCA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16272004 227 + 83442489 TCTTCAGATGATACTCTCTCTCATGAGTCCACAATAAATTCCCAAGCTTTTTTTGATGCAGATGAATTGAATGAGTGGCTGGTCAGAGGCTGAGACA---AAAAGAGAT-CCCTGCATTCAGGGCAGCCATTAAATGCAGTCCCTGCTGCCATATCATGCAGCTGTTTCTCACTGAGGTGTGGGAAA-----TTGGGAA---TT----TTT-----TGT-----A----AACAAAAACGTTATCTGCAAATATAAGA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4118860 227 +  4267968 TCTTCAGATGAGACTCTCTCTCATGAGTCCACAATAAATTCCCAAGCTTTTTTTGATGCAGATGAATTGAATGAGTGGCTGGTCAGAGGCTGAGACA---AAAAGAGAT-CCCTGCATTCAGGGCAGCCATTAAATGCAGTCCCTGCTGCCATATCATGCAGCTGTTGCTCACTGAGGTGTGGGAAA-----TTGGGAA---TT----TTT-----TGT-----A----AACAAAAACGTTATCTGTAAATATAAGA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2108520 233 -  2193130 TCTTCAGATGGGACTC--TCTCATGAGTCCACAATGAATTCTCAAGCATTTTTTGATGCAGATGAATTGAATGAATGGCTGGTCAGAGGATGAGACA---AAAAGAGAT-CCCTGCTTTCAGGGCAGCCATTAAATGCAGTCCCTGCTGCCATATCATGCAGCTGTTGCTCACTGAGGTGTGGGAAACTTATTTGGGAAAACTT----TTT-----TGT-----G----AACAAGAATGTTATCTGCAAATGTAAGA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30168641 235 - 77216781 TCTTCAGAT-AGACTCCCTCTCATGAGTCCACAATACATTCTCAAGCATTTTTTGTTGCAGTAAAAGTGAATGAATGGCTGGTTGGAGACTGAGAAA---ACA--CAGT-CCCTGCACTCAGGGCAGCCATTAAATGCAGTTCCTGCTGCCATATCATGCACCTGTTCCTCATTCAGGTGTGGGAAATTATGCTGGTAA---TT--TTTTT-----TGT-----GTGTTAACAAAAACGTTATCTGCAAATATGAGA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28063235 218 - 80997621 TCTTCAGATGAGACTCTCTCTCATGAGTCCACAATAAATTCCCAAGCA-TTTTTTATGCAGATGCATAGAATGAATGGCTGGTCAGAGGCTGAGACA---AAA--AGAT-CCCTGCATTCAGG-------------GCAGTCCCTGCTGCCACATCGTGCAGCTGTTGCTCGCCGAGGTGTGGGAAACTAATTAGGGAA---TT--TTTTT-----TAT-----C----AACAAAAATGTTAGCTGCAAACATGAGA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2121640 234 + 10377808 TCTTCAGATGAGACTCCCTCTCATGAGTCCACAATGAATTCTCCAGCAGTTTTTGATGCAGGTGAATGGAATCAATGGCTGATCAGAGGCTGAGATG---AAA--AGAT-CTCTGCATTCAGGGCAGCCATTAAATGCAGTCCCTGCTGCCATATCATGCAACTCTTGCTCACTGAGGTGCAGGAAACTAAGTTGGAAA---TTAAGTTTA-----TGT-----G----AACAAAAATGTTATCTGCCAATATAAGT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2011857 218 -  8458610 TCTTCAGATGAGACTCTCTCTCATGAGTCCACAATAAATTCCCAAGCA-TTTTTTATGCAGATGCATAGAATGAATGGCTGCTCAGAGGCTGAGACA---AAA--AGAT-CCCTGCATTCAGG-------------GCAGTCCCTGCTGCCACATCATGCAGCTGTTGCTCACTGAGGTGTGGGAAACTAATTAGGGAA---TT--TTTTT-----TGT-----A----AACAAAAATGTTAGCTGCAAACATGAGA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64951860 219 + 75148670 TCTTCAGATGAGACTCTCTCTCATGAGTCCACAATAAATTCCCAAGCA-TTTTTTATGCAGATGCATAGAATGAATGGCTGGTCAGAGGCTGAGACA---AAA--AGAT-CCCTGCATTCAGG-------------GCAGTCCCTGCTGCCATATCATGCAGCTGTTGCTTACTGAGGTGTGGGAAACTAATTAGGGAA---TT-TTTTTT-----TGT-----A----AACAAAAATGTTAGCTGCAAACGTGAGA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2217464 234 +  4244037 CCTTCAGATGAGACTCCCTCTCATGAGTCCACAATGAATTCTCAAGCAGTTTTTGATGCAGGTGAATGGAATCAATGGCTGATCAGAGGCTGAGATG---AAA--AGAT-CTCTGCATTCAGGGCAGCCATTAAATGCAGTCCCTGCTGCCATATCATGCAACTGTTGCTCACTGAGGTGCAGGAAACTAAGTTGGAAA---TTAAGTTTA-----TGT-----G----AACAAAAATGTTATCTGCAAATATAAGT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2216260 230 +  4569836 TCTTCAGATGAGACTCTCTCTCATGAGTCCACAATAAATTCCCAAGCA-TTTTTTATGCAGATGCATAGAATGAATGGCTGGTCAGAGGCTGAGAC----AAA--AGAT-CCCTGCATTCAGGGCAGTCATTAAATGCAGTCCCTGCTGCCATATCATGCAACTGTTGCTCACTGAGGTGTGGGAAACTAATTAGGGAT---TT--TTTTT-----TGT-----T----AACAAAAATGTTAGCTGCAAACAGGAGA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     6504 232 -    12755 CCTTCAATTGAGACTCTCTCTCATGAGGACACAATCAATTCTCAAGCATTTTTTGATGCAGATGAATTGAATGAATGGCTCGTCAGAGGCTGAGATA---AAAAGAGAT-CC-TGCATTCAGGGCAGCTATTAAATGCAGTCCCCGCTGCCATATCATGCAGCAGTTGCTCACTGAAGTGTGGGAAATGAATTTGGGAA---TA---TTTT-----TGT-----G----AACAAAAATGTTATCTGCAAATATGAAG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1873683 234 +  3513951 TTCTCAGATCAGACTCTCTTTCTTG-GGACAGAATGCATTCTCACAAA-TGTTTGATGCAGATTAATTGAATAAGTAGCTGGTCAGAGGCAGAGTGG---AAAAGAGAG-CC--ACATTCAGGGGAGCTATTAAATGCAGTCCCTGTTTTCATACCATGTAGCTATTGCTCACTGAGGTGTGGAAAACTAATTTGGGAA---GA---CCTT-----TTTGAACAG----AACAGAAATGTTATCTGCAAATATGAGA
i saiBol1.JH378271                 I 6421 C 0
s cebCap1.NW_016107543v1              21416 233 -  4077172 CCTTCAGATAAGACTCTCTCTCATGAGGACACAATGAATTCTCAAGCATTTTTTGATGTAGATGAATTGAATGAATGGCTCATCAGAGGCTGAGACA---AAAAGAGGT-CCCCAGATTCAGGGCAGCTATTAAATGCAGTCCCTGCTGCCATATCATGTAGCAGTTGCTCACTGGAGAGTGGGAAATGAATTTGGGAA---TA---CTTT-----TGT-----G----AACAAAAATGTTATCTGCAAATATGAAG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              15227 232 -    94492 CCTTCAGATGAGAGTCTCTCTCATGCGGACACAATGAATTCTCAAGCA-TTTTTGATGCAGATGAATTGAATGAATGGCTCGTCAGAGGCTGAAACA---AAAAGAGAT-CCCTGCATTCAGGGCAGCTATTAAATGCAGTCCCTGCTGCCATATCATGCAGTGGTTGCTCACTGAAGTGTGGGAAATGAATTTGGGAA---TA---TTTT-----TGT-----G----AACAAAAATGTTATCTGCAAATATGAAG
i aotNan1.NW_018505111v1           C 0 C 0
s canFam3.chr9                     21520468 222 + 61074082 TGTTCATCTGCAGCCCTCAGTCATGAGGACACCGTAGGCTCAC---CTATCTTTGATGCGGAGGGGT-GCATGAGGGACTGGATGGGGCCCAAGGCAACCAAA--GGGC-TCCTGTGCACAGG--AACTCTACAAGGAAGGGCCCACTGCCCTCACACAGGGATTCTGGTCACTGAGGTGTAGGACACAATGTCTACAA---CT----TTG-----TCC-----C---------AGATGTTCCCCACATATGTAGGG
i canFam3.chr9                     C 0 I 2
s dasNov3.JH570468                   592219 228 -   852752 CCTTTAGATGAGCATCCCTAACTTCA-CATAAAGTGGAGTCTCAAAA--TATGTGATGCCGGTGAATGGCATCCCTGAGTGGAAAGAGCCTGAGGCA---AACAACGTCACCCTGTGTTAAGGG-ATCTCTTATACATAGCCATTGATACC-TTTCACATCATTGTTGCTCACTGAGGTGTTGAAAACTGATTTGGAAA---GA---GCTT-----TGT-----A----CATGGAAACATTAACTG-ATATTCAACA
i dasNov3.JH570468                 C 0 C 0
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=1141759.000000
s hg38.chr17_JH159148v1_alt           56143 127 +    88070 --GATTATTTGTCCTATTGTT-AAAA-AAACTCAAGTATATGACTTGCTAATAC-TTACT-TCCAATGTCATTTCTA-C-TATATTG-AGAGTTAAATGTAAGTGTCCTTGGGCAGAAAGAGAGgacct-cagcttg
s panTro5.chr17                    16367019 127 + 83181570 --GATTATTCCTCTCATTGTT-AAAT-AAACTCAAGTACATGTCTTGCTAGTGC-TGACT-TCCAGTGTCATTTCTA-C-TATATTG-GGAGTTAAATGTAAGTGTCCTTAGGCAGAAAGAgaggacct-caccttt
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16272231 128 + 83442489 --GATTATTTGACCTATTGTTAAAAA-AAACTCAAGTATATGACTTGCTAATAC-TTACT-TCCAATGTCATTTCTA-C-TATATTG-AGAGTTAAATGTAAGTGTCCTTGGGCAGAAAGAGAGgacct-cagcttg
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4119087 127 +  4267968 --GATTATTTGTCCTATTGTT-AAAA-AAACTCAAGTATATGACTTGCTAATAC-TTACT-TCCAATGTCATTTCTA-C-TATATTG-AGAGTTAAATGTAAGTGTCCTTGGGTAGAAAGAGAGgacct-cagcttg
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2108753 126 -  2193130 --GATCATTCCTCTCATTGTT-AAAT-AAAATCAAGTGCATGTCTTGCTAGTGC-TGTCT-TCCAATGTCATCTC-A-C-TGTATTG-AGAGTTAAACGTAAGTGTCCTTGGGCAGAATGAGAGGACCC-CAGCTTG
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30168876 127 - 77216781 --GATTATTCCTCTCACTGTT-AAAT-AAACTCAAGTGCAAGTCTTGCTAATGC-TGACT-TCCAATGTCATTTC-A-C-TATATTG-AGAGTTAAATGTAAGTGCTCTCGGCCAGAAAGAGAGAACTTCCACCTTG
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28063453 127 - 80997621 --GATTATTTATCTCATTGTT-CAAT-AAACTCAAGTGCATGTCTTGCTAGTGC-TGACT-TCCAATGTCTTTTCTA-C-TATATTG-AGAGTTAACCATAAATGTCCTTGGGCAGAAAGAGAGGACCT-CAGCTTG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2121874 127 + 10377808 --GATTAATCCTCTCGTTGTT-AAAG-AAACTCAAGTGCATGTCTTGCTAGTGC-TGACT-TCCAATGTCATTTCTA-C-TATATTG-AGAGTTAAATGTAAGTGTCCTTGGATAGAAAGAGAGGACCT-CAGCTTG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2012075 127 -  8458610 --GATTATTTATCTCATTGTT-AAAT-AAACTCAAGTGCATGTCTTGGTAATGC-TAACT-TCCAATGTCATTTCTA-C-TATATTG-AGAGTTAAACATAAATGTCCTTGGGCAGAAAGAGAGGACCT-CAGCTTG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64952079 127 + 75148670 --GATTATTTATCTCATTGTT-AAAT-AAACTCAAGTGCATGTCTTGCTAGTGC-TGACT-TCCAATGTCATTTCTA-C-TATATTG-AGAGTTAAACATGAATGTCCTTGGGCAGAAAGAGAGGACCT-CAGCTTG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2217698 127 +  4244037 --GATTAATCCTCTCATTGTT-AAAG-AAACTCAAGTGCATGTCTTGCTAGTGC-TGACT-TCCAATGTCATTTCTA-C-TATATTG-AGAGTTAAATGTAAGTGCCCTTGGGTAGAAAGAGAGGACCT-CAGTTCG
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2216490 127 +  4569836 --GATTATTTATCTCATTGTT-AAAT-AAACTCAAGTGCATGTCTTGGTAATGC-TAACT-TCCAATGTCATTTGTA-C-TATATTG-AGAGTTAAATGTAAATGTCCTTGGGCAGAAAGAGAGGACCT-CAGCTTG
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     6736 127 -    12755 --GATTATTCCTCTTATTGTT-AAAC-AAACTCAAGCGCATGTCTTGCTAGTGC-TGACT-TTCAAGGTCATTTCTA-C-CTTATTG-AGAGTTAAATGTAATTGTCCTTGGGCAGAAGGAAAGGACCT-CATTTTG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1873917 125 +  3513951 --GATTATACCGCCCA-TGTT-CAAT-AAACTC-AGTGCTTGTCTTTTTCTTAC-TGAAT-CCCAATATCATTTCTA-C-TTTACTG-AGAATTAAATCGGAGTGTTGTTGGGCAGAAAGAGAGGATCT-CACCTTG
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              21649 127 -  4077172 --GATTATTCCTCTTACTGTT-AAGC-AAACTCCAGTGCATGTCTTGCTAGTGC-TGACT-TTCAAGGTCATTTCTA-C-CTTATTG-AGAGTTAAATGTAATTGTCCTTGGACAGAAGGAGAGGACCT-CATCTTG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              15459 127 -    94492 --GATTATTCCTCTTATCGTT-AAAC-AAACTCAAGTGCATGTCTTGCTAGTGC-TGACT-TTCAAAGTCATTTCTA-C-CTTATTG-AGAGTTAAATGTAATTGTCCTTGGGCAGAAGGAGAGGACCT-CATCTTG
i aotNan1.NW_018505111v1           C 0 I 334
s otoGar3.GL873537                 22867388 123 + 28711273 --gatttttgttgttgttgTT--------GCTCAAGTGCACAGCTCACCAGTTC-TCATTCTCCAGTAGCAGTTCTAGT-TGCTTTG-AGATGGACATGCAGGTGCCCTTGAGCAGACACCGCAGACCC-AGTCCTG
i otoGar3.GL873537                 I 5356 C 0
s canFam3.chr9                     21520692 128 + 61074082 --GACCAGTTCCATGGTCAAT-GAAG-ACACTCAACTGAATAGCTTGCTGGAGC-TCAGG-GCCAGGGTGTTTCCTAAC-TGGTCTGCAGATGGGAATGTGAGCGCCCTTCAGCCAGGGCAGGAGATA--CAGCCTG
i canFam3.chr9                     I 2 C 0
s dasNov3.JH570468                   592447 128 -   852752 GTTATTATTTCT----TTGCC-AAATGGAATTCAAAAATCCATCTTGCTAACACTTGATC-TGCAGCACCATTTCTC-CTTACCTTG-AGAGGCAAGTCTAAGAGACCTCCACCAGAGCCAGAAGACCC-AGTTCTC
i dasNov3.JH570468                 C 0 C 0

a score=21913.000000
s hg38.chr17_JH159148v1_alt           56270 2 +    88070 ga
s panTro5.chr17                    16367146 2 + 83181570 ga
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16272359 2 + 83442489 ga
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4119214 2 +  4267968 ga
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2108879 2 -  2193130 GA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30169003 2 - 77216781 GA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28063580 2 - 80997621 GA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2122001 2 + 10377808 GA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2012202 2 -  8458610 GA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64952206 2 + 75148670 GA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2217825 2 +  4244037 GA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2216617 2 +  4569836 GA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     6863 2 -    12755 GA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1874042 2 +  3513951 GA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              21776 2 -  4077172 GA
i cebCap1.NW_016107543v1           C 0 I 337
s otoGar3.GL873537                 22867511 2 + 28711273 GA
i otoGar3.GL873537                 C 0 I 2
s canFam3.chr9                     21520820 2 + 61074082 GC
i canFam3.chr9                     C 0 I 2
s dasNov3.JH570468                   592575 2 -   852752 CA
i dasNov3.JH570468                 C 0 C 0
e aotNan1.NW_018505111v1              15586 334 -    94492 I

a score=-29430.000000
s hg38.chr17_JH159148v1_alt           56272 3 +    88070 -ca---a
s panTro5.chr17                    16367148 3 + 83181570 -cc---a
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16272361 3 + 83442489 -ca---a
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4119216 3 +  4267968 -ca---a
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2108881 3 -  2193130 -CC---A
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30169005 6 - 77216781 -CCGCAG
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28063582 3 - 80997621 -AC---A
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2122003 3 + 10377808 -TC---A
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2012204 3 -  8458610 -AC---A
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64952208 3 + 75148670 -AC---A
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2217827 3 +  4244037 -TC---A
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2216619 3 +  4569836 -AC---A
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     6865 3 -    12755 -TC---A
i calJac3.chr5_ACFV01180105_random C 0 I 314
s saiBol1.JH378271                  1874044 3 +  3513951 -CC---T
i saiBol1.JH378271                 C 0 C 0
s otoGar3.GL873537                 22867515 1 + 28711273 -T-----
i otoGar3.GL873537                 I 2 C 0
s canFam3.chr9                     21520824 2 + 61074082 -CT----
i canFam3.chr9                     I 2 C 0
s dasNov3.JH570468                   592577 3 -   852752 TCT----
i dasNov3.JH570468                 C 0 C 0
e aotNan1.NW_018505111v1              15586 334 -    94492 I
e cebCap1.NW_016107543v1              21778 337 -  4077172 I

a score=105851.000000
s hg38.chr17_JH159148v1_alt           56275 17 +    88070 gagtctgccctttacta
s panTro5.chr17                    16367151 17 + 83181570 gagtctgccctttacta
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16272364 17 + 83442489 gagtctgccctttacta
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4119219 17 +  4267968 gagtctgccctttacta
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2108884 17 -  2193130 GAGTCTGTCTTTTATTA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30169011 16 - 77216781 AAATCTGCCT-TTAGTA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28063585 17 - 80997621 GAGTCTGCCCTTTACTA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2122006 16 + 10377808 GAATCTGTCC-TTATTA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2012207 17 -  8458610 GAGTCTTCCCTTTACTA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64952211 17 + 75148670 GAGTCTGCCCTTTAGTA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2217830 16 +  4244037 GAATCTGTCC-TTATTA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2216622 17 +  4569836 GAGTCTGCCCTTTACTA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     7182 16 -    12755 GAGTCTGTCCATTATT-
i calJac3.chr5_ACFV01180105_random I 314 C 0
s saiBol1.JH378271                  1874047 17 +  3513951 GAGTCTGTCCTTTATTA
i saiBol1.JH378271                 C 0 C 0
s otoGar3.GL873537                 22867516 17 + 28711273 CAGTGTGACTATTATTC
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21520826 16 + 61074082 GATTCTGCCC-CTGTCA
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   592580 17 -   852752 GAGTTTGGGCATTTCTA
i dasNov3.JH570468                 C 0 C 0
e aotNan1.NW_018505111v1              15586 334 -    94492 I
e cebCap1.NW_016107543v1              21778 337 -  4077172 I

a score=16757.000000
s hg38.chr17_JH159148v1_alt           56292 2 +    88070 gc-
s panTro5.chr17                    16367168 2 + 83181570 gc-
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16272381 2 + 83442489 gc-
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4119236 2 +  4267968 gc-
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2108901 2 -  2193130 GC-
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30169027 2 - 77216781 GT-
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28063602 2 - 80997621 GC-
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2122022 2 + 10377808 GC-
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2012224 2 -  8458610 GC-
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64952228 2 + 75148670 GC-
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2217846 2 +  4244037 GC-
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2216639 2 +  4569836 GC-
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     7198 2 -    12755 GC-
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1874064 2 +  3513951 GC-
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              22115 2 -  4077172 GC-
i cebCap1.NW_016107543v1           I 337 C 0
s otoGar3.GL873537                 22867533 2 + 28711273 AC-
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21520842 2 + 61074082 GC-
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   592597 2 -   852752 -CA
i dasNov3.JH570468                 C 0 C 0
e aotNan1.NW_018505111v1              15586 334 -    94492 I

a score=249912.000000
s hg38.chr17_JH159148v1_alt           56294 27 +    88070 tacataaca-tcaca-c-attaaattgttc
s panTro5.chr17                    16367170 27 + 83181570 tacataaca-tcaca-c-attaaatttttc
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16272383 27 + 83442489 tacataaca-tcaca-c-attaaattgttc
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4119238 27 +  4267968 tacataaca-tcaca-c-attaaattgttc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2108903 27 -  2193130 TACATAACA-TCACA-C-ATTAAATTGTAC
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30169029 29 - 77216781 TACATAACATTCACA-CAATTAAATTGTTC
i rheMac8.chr16                    C 0 I 38
s macFas5.chr16                    28063604 27 - 80997621 TACATAACA-TCACA-C-ATTAAATTGTAC
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2122024 27 + 10377808 TACATATCA-TCACA-C-ATTAAATTGTTC
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2012226 27 -  8458610 TACATAACA-TCACA-C-ATTAAATTGTAC
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64952230 27 + 75148670 TACATAACA-TCACA-C-ATTAAATTGTAc
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2217848 27 +  4244037 TACATATCA-TCACA-C-ATTAAATTGTTC
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2216641 27 +  4569836 TACATAACA-TCACA-T-AGTAAATTGTAC
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     7200 27 -    12755 CACATAACA-TCACA-C-ATTAAATTGttc
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1874066 27 +  3513951 TACATCAGA-GCACA-C-AATAAATTGTTC
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              22117 27 -  4077172 TACATAATA-TCACA-T-ATTAAATTGttc
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              15920 27 -    94492 TACATAACA-TCACA-C-ATTAAATTGttc
i aotNan1.NW_018505111v1           I 334 C 0
s otoGar3.GL873537                 22867535 27 + 28711273 TACAAGACA-TTATG-C-TATGAAGTTTTC
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21520844 27 + 61074082 TCTGTGACA-TGATGTC-ATGGGATTTTA-
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   592599 27 -   852752 CACATGACT-TTACA-CAAGTCAATTTTC-
i dasNov3.JH570468                 C 0 C 0

a score=280627.000000
s hg38.chr17_JH159148v1_alt           56321 38 +    88070 tcagctgaaa-aaatggaggtaataacacacgaccatct
s panTro5.chr17                    16367197 38 + 83181570 tcagctgaaa-aaatggagttaataatacacgatcatct
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16272410 38 + 83442489 tcagctgaaa-aaatggaggtaataacacacgaccatct
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4119265 38 +  4267968 tcagctgaaa-aaatggaggtaataacacacgaccatct
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2108930 38 -  2193130 TCAGCTAAAA-AAATGAAGGTAATAATACATGACTATCT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28063631 38 - 80997621 TCAACTGAAA-GAATGGAGGTAATAATACGTGATCATAT
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2122051 38 + 10377808 TCAGCCAAAA-AAATGAAGGTAACAATACATGACCATCT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2012253 38 -  8458610 TCAACTGAAA-GAATGGAGGTAATAATACATGATCATAT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64952257 38 + 75148670 tcaactgaaa-gaatggaggtaataatacatgatcatat
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2217875 38 +  4244037 TCAGCTGAAA-AAATGAAGGTAACAATACATGACCGTCT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2216668 38 +  4569836 TCAACTGAAA-GAATGGAGGTAATAATACATGATCATAT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     7227 37 -    12755 tcagctgaaa--aatgaaggtaataatccatgaccatct
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1874093 37 +  3513951 TCGGCTGAAT--AATTGAGGCAATAACACATGAGCATCT
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              22144 37 -  4077172 tcagctgaaa--aatgaaggtaataatccatgaccatct
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              15947 37 -    94492 tcagctgaaa--aatgaaggtaataatccatgaccatct
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22867562 39 + 28711273 TCATCTGAAAAAAATGATATTAACAATACAAGGGTAACT
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21520871 36 + 61074082 TCATCTCCAA---GTGGAGATACAAATTTGTGGGGGATT
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   592626 36 -   852752 AAGTCTGAAG-GGA--GAGGCAATATTTACTGGGAGGTT
i dasNov3.JH570468                 C 0 C 0
e rheMac8.chr16                    30169058 38 - 77216781 I

a score=499564.000000
s hg38.chr17_JH159148v1_alt           56359 51 +    88070 gt-tttgag--aatcaaattgg-ataatacctat-GGTATGTGATATGTGTGTAAA
s panTro5.chr17                    16367235 51 + 83181570 gt-tttgag--aatcaaattgg-ataatacctat-ggtatgtgaTATGTGTGTATA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16272448 51 + 83442489 gt-tttgag--aatcaaattgg-ataatacctat-GGTATGTGATATGTGTGTAAA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4119303 51 +  4267968 gt-tttgag--aatcaaattgg-ataatacctat-GGTATGTGATATGTGTGTAAA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2108968 51 -  2193130 GT-TTTGAG--AATCAAATTGG-ATAATACCTAT-GGTATGTGATATGTGTGTAAA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30169096 52 - 77216781 GT-TTTGAG--AATCAAATTGGAATAATACCTAT-CGTATGTGATATATGTGTAAA
i rheMac8.chr16                    I 38 C 0
s macFas5.chr16                    28063669 51 - 80997621 GT-TTTGAG--AGTCAAGTTGG-ATAATACCTAT-GATATGTGATATGTATATAAA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2122089 51 + 10377808 GT-TTTGGG--AATCAAGCTGG-ATAATACCTAT-GGTATATGATATGTGTGTAAA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2012291 51 -  8458610 GT-TTTGGG--AATAAAATTGG-ATAATACCTAT-GGTATGTGATATGTATGTAAA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64952295 51 + 75148670 gt-tttgag--aatcaaattgg-ataatgcctat-GGTATGTGATATGTATGTAAA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2217913 51 +  4244037 GT-TTTGGG--AATCAAGCGGG-ATAATACCTAT-GGTATATGATATGTGTGTAAA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2216706 52 +  4569836 GTATTTGAG--AATCAAATTGG-ATAATACCTAT-GCTATGTGATATGTATGTAAA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     7264 51 -    12755 gt-tctgag--gatcaaattaa-ataatacatat-gGTATGTTATATGTGTGTAAA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1874130 51 +  3513951 GT-TTTCAG--AATCAAGTTGC-ATATTACATAT-AGGATGCAATATGTGTGTAAA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              22181 51 -  4077172 gt-tctgag--gatcaaattaa-ataatacatat-gGTATGTTATATGTGTGTAAA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              15984 51 -    94492 gt-tctgca--gatcaaattaa-ataatacatat-gGTATGTGACATGTGTGTAAA
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22867601 51 + 28711273 GT-ATTGAA--AAGAAAAATGG-ATAATATATAT-GGCATGCCATACGTATACAAG
i otoGar3.GL873537                 C 0 I 46640
s canFam3.chr9                     21520907 50 + 61074082 --ATAGGAG--GCTCTAAATGG-ATAATGCACGT-GGTATGGAACTTGTGTATACA
i canFam3.chr9                     C 0 I 1
s dasNov3.JH570468                   592662 50 -   852752 TT-TATGAGGCAGTAAAAC----CTCatatttataaatatataa-atgtttataaa
i dasNov3.JH570468                 C 0 C 0

a score=2012522.000000
s hg38.chr17_JH159148v1_alt           56410 219 +    88070 -TCTCATATCAGG-AATGCTTTC-ATATAAAACA-AAA--CACCATATGAGAT--G-A-----------GGATGGTTCAGAG-TTTATTCAGAAACATATAGCTAAGAATCTCTG---CTGGTAGCAGAAACATAACCC---AAAGTTA---TG-AAAAGAAGAAAGAAGGATACAAGAACCATGAGGAGGATATTGAAAACAAAAATATGATTGCAAAG-ATTATTGATCAG---TTGCAGA---------------------A------------------------------ACCTAAATTC
s panTro5.chr17                    16367286 219 + 83181570 -TCCCATATCAGG-AATGCTTTC-AAATAAAACA-AAA--CACTATATGAGAT--G-A-----------AGATGGTTCAGAG-TTTATTCAGAAACATATAGGTAAGAATCTCTG---C---TACCAGGGACATAACCC---AAAGTTATCGTG-AAAAGAAGAAAGAAGGATACAAAAACCATGAGAAGGATATTGAAAATGAAAATATGATTGCAAAG-ATTATTGATCAG---TTGCAGA---------------------A------------------------------ACCTAAATTC
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16272499 222 + 83442489 -TCTCATATCAGG-AATGCTTTC-AAATAAAACA-AAA--CACCATATGAGAT--G-A-----------GGATGGTTCAGAG-TTTATTCAGAAACATATAGCTAAGAATCTCTG---CTGGTAGCAGAGACATAACCC---AAAGTTATCATG-AAAAGAAGAAAGAAGGATACAAGAACCATGAGGAGGATATTGAAAACAAAAATATGATTGCAAAG-ATTATTGATCAG---TTGCAGA---------------------A------------------------------ACCTAAATTC
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4119354 222 +  4267968 -TCCCATATCAGG-AATGCTTTC-AAATAAAACA-AAA--CACCATATGAGAT--G-A-----------GGATGGTTCAGAG-TTTATTCAGAAACACATAGCTAAGAATCTCTG---CTGGCAGCAGAGACATAACCC---AAAGTTATCATG-AAAAGAAGAAAGAAGGATACAAGAACGATGAGGAGGATATTGAAAACAAAAATATGATTGCAAAG-ATTATTGATCAG---TTGCAGA---------------------A------------------------------ACCTAAATTC
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109019 218 -  2193130 -TCCCATATCAGG-AATGCTTTC-AAATAAAACA-AAA--CACCATATGAGAT--G-A-----------GGATGATTCAGAG-TTTATTCAGAAATATATAGGTAAGAATCTCTG---C---TACCAAGGACATAA-CC---AAAGTTATCATG-AAAAGAAGAAAGAAGGATACAAGAACCATGAGGAGGATATTGAAAACAAAAATATGATTGCAAAA-ATTATTGATCAG---TTGCAGA---------------------A------------------------------ACCTATATTC
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30169148 229 - 77216781 -TCCCATATCAGGAAATATTTTT-AAATAAAACA-AAAACCAGCATATGAGATTGA-G-----------GGATGGTTCAGAACTTTACTCAGAAA-ACATAGCAAAGAATTTCCTTGCC---TACCAGGGACATAACTC---AAAGTTATCATGAAAAAAAAGAAAAAAGGATAGCAAGAACATGAGGACGATATTGAAAACAAAAATATAATTGCAAAGTTTTATCGATCAG---TTCAGAA---------------------A------------------------------ACCTAAATTC
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28063720 219 - 80997621 -TCCCATATCAGG-AGTGATTCC-AAATAAAACA-AAA--CACCATATGAGAT--G-A-----------AGTTGGTTCCAAG-TTTATTCAGAAACATATAGCTAAGAATCTCTG---T---TACCAGGGACATAACCC---AAAGTTATCATG-AAAAGAAGAAAGAAGGATACAAGAAACATGAGGAGGATATTGAAAACAAAAATATGATTGTAAAG-ATTATTGATCAG---TTGCAGA---------------------A------------------------------ACCTAAATTC
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2122140 219 + 10377808 -TCCCATATCAGA-AATGCTTTC-AAATAAAACA-AAA--CACCTTATGAGAT--G-A-----------GGATAGTTCAGAG-TTTATTCAGAATCATATAGCTAAGAACTTCTG---C---TACCAGGGACATAACCC---AAAGTTATCATG-AACACAAGAAAGAAGGATACAAGAAACATAAGGAGGATATTGAAAACAAAAATACGATTGCAAAG-ATTATTGATCAA---TTGCAGA---------------------A------------------------------ACCTAAATTG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2012342 219 -  8458610 -TCCCATATCAGG-AATGATTCC-AAATAAAACA-AAA--CACCATATGAGAT--G-A-----------GGTTGGTTCCAAG-TTTATTCAGAAACAAATAGCTAAGAATCTCTG---T---TACCAGAGACATAACCC---AAAGTTATCATG-AAAAGAAGAAAGAAGGATACAAGAAACATGAGGAGGATATTGAAAACAAAAATATGATTGCAAAG-ATTATTGATCAG---TTGCAGA---------------------A------------------------------ACCTAAATTC
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64952346 219 + 75148670 -TCCCATATCAGG-AATGATTCC-AAATAAAACA-AAA--CACCATATGAGAT--G-A-----------GGTTGGTTCCAAG-TTTATTCAGAAACATATAGCTAAGAATCTCTG---T---TACCAGAGACATAACCC---AAAGTTATCATG-AAAAGAAAAAAGAAAGATACAAGAAACATGAGGAGGATATTGAAAACAAAAATATGATTGCAAAG-ATTATTGATCAG---TTGCAGA---------------------A------------------------------ACCTAAATTC
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2217964 218 +  4244037 -TGCCATATCAGA-AATTCTTTC-AAATAAAACC-AAA--CACCTTATGAGAT--G-A-----------GGATACTTCAGAG-TTTATTCAGAATCATATAGCTAAGAACTTCTG---C---TACCAGGGACATAACCC---AAAGTTATCATG-AACACAAGAAAGAAGGATACAAGAAACATAAGGAGGATATTGAAAACAAAAA-AAGATTGCAAAG-ATTATTGATCAA---TTGCAGA---------------------A------------------------------ACCTAAATTC
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2216758 219 +  4569836 -TCCCATATTAGG-AGTGATTCC-AAATAAAACA-AAA--CACCATATGAGAT--G-A-----------AGTTGGTTCAGAG-TTTATTCAGAAACATATAGCTAAGAATCTCTG---T---TACCAGGGACATAACCC---AAAGTTATCATG-AAAAGAAGAAAGAAGGATACAAGAAACATGAGGAGGATATTGAAAACAAAAATATGATTGCAAAG-ATTATTGATCAG---TTGTAGA---------------------A------------------------------ACCTAAATTC
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     7315 215 -    12755 -TCCCATATCAAG-AATGCTTTA-AAATAAAACA-AAA--CACCATGTGAGAT--G-A-----------GGATGGTTCAGAG-TTTATTCAGAAACATGTAGGCAAGAATGTCTG---C---TACCAGGAACATGACCC---AAAGTCATCATG-AAAAGAAGAAAGACA----CAAGAACAATGAGGAGGATATTGAAGACAAAATTATGACTACAAAG-ATTATGGATTAG---TTGCAGA---------------------A------------------------------ACCTAAATTT
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1874181 216 +  3513951 -TCCCTTAGC----AATTCTGTA-GAATAAAACA-AAA--CACCATATGAGAT-GG-A-----------GGATGGTTCAGAA-TTTATTGAGAAACATATTGGTAAGAATCTGTG---C---TATAAGGGACTTAGCCC---AGAGTTATTGTA-AAAAGTAGAAAGGAGGGT-AAAAAACCATGAGGAGGAAATTGAAAATGAAAATATGATTGCAAAG-ATTATGGATACG---TTGCAGA---------------------A------------------------------ATCTAAATTT
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              22232 219 -  4077172 -TCCCATATCAGG-AATGCTTTA-AAATAAAACA-AAA--CACCATATGAGAT--G-A-----------GGATGGTTCAGAG-TTTATTCAGAAACATGTAGGCAAGAATCTCTG---C---TACCAGGAACATGACCC---AAAGTTATCATG-AAAAGAAGAAAGAAAGATACAAGAACAATGAGGAGGATATTGAAGACAAAATTATAACTGCAAAG-ATTATGGATCAG---TTGCAGA---------------------A------------------------------ACCTAAATTT
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              16035 219 -    94492 -TCCCATATCAGG-AATGCTTTA-AAATAAAATA-AAA--CACCATATGAGAT--G-A-----------GGATGGTTCAGAG-TTTATTCAGAAACATGTAGGTAAGAGTCTCTG---C---TACCAGGAACATAGTCC---AAAGTTATCATG-AAAAGAAGAAAGAAAGATACAAGAACAATGAGGAGGATATTGAAAACAAAATTATGATCGCAAAG-ATTATGGATTAT---TTGCAGA---------------------A------------------------------ACCTAAATTT
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22914292 213 + 28711273 -TCTTATGAAGGA-AATGCTCTAGAAATAAATAC-AAA--TGCAAGAGAAGAT--G-T-----------GAGGCAATACAGG-TTTATTAGGAAATAAGCAGGGGAGACTCCCCT---C---AACTAGGAAAACAATGT---AAAGTGGCCATA-AAAGGGGAAAAGAAGAGGGC-ACAATAATAAGGAATACATTGA----GAAAATATCACTT------ATCATTGAGAAGAGTTAGGAAA---------------------A------------------------------AAGTAGGTTT
i otoGar3.GL873537                 I 46640 T 19683
s canFam3.chr9                     21520958 235 + 61074082 -CGTGATGTTGTG-AGCACT----GAAGAAGACATGGA--CACCATATGGGAT--GCA-----------GAATGATACACGG-TTTATT--AAAAGGTATAGGTGAGACCTCCCC---C---CTGCATGGAGGGAGCCCTTTGATGTGTTCATG-CAAGGATGAGAAAAGGATACAAGGACTGTGAGG---ACACGGAAAGAGAAAACATGA-TGCCAAG-ACT-TTCATTAG---TGGCAGACCTCTGTACAATAGGCATAAGG------------------------------ACTTGTGTCT
i canFam3.chr9                     I 1 C 0
s dasNov3.JH570468                   592712 253 -   852752 tCTCTGTATCAGA-AAGGCTATA-GAACAAAAGGGAAA--CATGATGTG-GAT--G-ACTGATTTGGATGAATGGTAGAGAA-TTTATTTAGAAACGTATACATAAGACTCCTTG---C---ATCAAGGGAGGCAAGTC---AAAG-GATCATA-AAAAGAAGATAGCATGACACAAGAATCAT---GGCTATATTAAAAGCAAA---GTGATTATGAAG-ATTATGGATCAA---TTAGAGA---------------------AGTCTATGGAAAGAGCTATGAACACTTGTTTGCTTAAGTT-
i dasNov3.JH570468                 C 0 C 0

a score=1926520.000000
s hg38.chr17_JH159148v1_alt           56629 235 +    88070 C---------TTAGAAGCAGAGAATGAAG----CTC--TTGACTTT---TGAGTCAAAGCTGAGACCATGAC-TCAAAATTGA-GAACACACGAA-GCTGGCACA---------TGATCCACAAAG-TGTAAGGAAAAAGAG-AAT----------------CAGGATGAAG-------TATT-CTGCCCTCCCT-CAAGCAGATTCCCAAGATTTTAAACAGGTAGAGAATT--CATAAAA-----------ATTT-GGGTGAGAG-CATGG--T-GGCTGTCAGCAGC-----AAATT----AAATTAGTCCCCC---AA--
s panTro5.chr17                    16367505 235 + 83181570 C---------TTAGAAGCAAAGAATGAAG----CTC--TTGATTTT---TGAGTCAAAGCTGAGATCATGAC-TCCAAATTGA-GAACAGACGAA-GCTGGCACA---------TGATCCACAAGG-TGTAAGGAAAAAGGG-AAT----------------GAGGATGAAG-------TATT-CTGCCATCCCT-CAAGCAGATTCCCAAGATTTTAAACATGTAGAGAATT--CATAAAA-----------ATTT-GGGTGAAAG-CATGG--T-GGCTGTCAGCAGC-----AAAAT----AAATTAGTCCCTC---AA--
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16272721 235 + 83442489 C---------TTAGAAGCAGAGAATGAAG----CTC--TTGACTTT---TGAGTCAAAGCTGAGACCATGAC-TCAAAATTGA-GAACACACGAA-GCTGGCACA---------TGATCCACAAAG-TGTAAGGAAAAAGAG-AAT----------------CAGGATGAAG-------TATT-CTGCCATCCCT-CAAGCAGATTCCCAAGATTTTAAACATGTAGAGAATT--CATAAAA-----------ATTT-GGGTGAGAG-CATGG--T-GGCTGTCAGCAGC-----AAATT----AAATTAGTCCCCC---AA--
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4119576 234 +  4267968 C---------TTAGAAGCAGAGAATGAAG----CTC--TTGACTTT---TGAGTCAAAGCTGAGACCATGAC-TCAAAATTGA-GAACACACGAA-GCTGGCACG---------TGATCCACAAGG-TGTAAGGAAAAA-AG-AAT----------------CAGGATGAAG-------TATT-CTGCCCTCCCT-CAAGCAGATTTCCAAGATTTTAAACATGCAGAGAATT--CATAAAA-----------ATTT-GGGTGAGAG-CATGG--T-GGCTGTCAGCAGC-----AAATT----AAATTAGTCCCCC---AA--
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109237 235 -  2193130 C---------TTAGAAGCAGAGAATGAAT----CTC--TTGACTTT---TGAGTCAAAGCTAAGATCATGAT-TCCAAATTGA-GAACAGACGAA-GCTGGCACA---------TGATCCACAAGG-TGTAAGGAAAAAGAG-AAT----------------CCTGATGAAG-------TATT-CTGCCCTCTCT-CAAGCAGATTCCCAAGATTTTAAACATACAGAGAATT--CATAAAC-----------ATTT-AGGTGACAG-CATGG--T-GGCTGTCAGCAGC-----AAAGT----AAATTAGTCCCTC---AA--
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30169377 254 - 77216781 CCT-------TCAGAAGCAGAGAATGAAA----CTCTTTTGACTTT---CAAGTGAAAGCTGAAACCATGACTTCCAAATTGAGGAACACACGAAGGCTGGCACA---------TGATCCACAAGGTTGGAAGGTAAAAGAGAAAT----------------CAGGAGAAGG-------TATTCCTGCCCTCCCTCAAAACAGATTCCAAGAT-TTTAAACATGCAGATAATTCCCATAAAA-----------ATTTGGGGTGAGAGCCACAG--TGGGCTGTCAGCAGC-----AAAGT---AAAATTAGTCCCCCCCAAA--
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28063939 234 - 80997621 C---------TTAGAAGCAGAGAATGAAG----ATC--TTGAGTTT---TGAGTCAAAGCTGAGACCATGAC-CCCGAATTGA-GAACACACGAA-GCTGGCACA---------TGATCCACAAGG-TGGAAGGAAAAGGAG-AAT----------------CAGGATGAAG-------TATT-TTGCTGTCCCT-GAAGCAGATTCCCAAGA-TTCATAAATGCAGAGAATT--CATAAAA-----------ATTT-GGGTGAGGG-CATGG--T-GACTGTCAGCAGC-----AAACT----AAATTAGTCCCCC---AA--
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2122359 233 + 10377808 C---------TTAGAAGCAGAGAAGGAAG----CAC--TTGAATAT---CGAGTC-AAGCTGGGACAATGAC-CCCAAGTTGA-GAACACACGAA-GCTGGCACA---------TGATCCACAAGG-TGGAAGGAAAAGGAG-AAT----------------CAGGATGAAG-------TATT-TTGCCATCCGT-GACACAGATTCCCAAGA-CTCATACACGCAGAGAATT--CATACAA-----------ATTT-GGGTGAGAG-CATGG--T-GGCTGTCAGCAGC-----AAAGT----AAATTAGTCCCCC---AA--
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2012561 234 -  8458610 C---------TTAGAAGCAGAGAATGAAG----ATC--TTGAGTTT---TGAGTCAAAGCTGAGACCATGAC-TCCAAATTGA-GAACACACAAA-GCTGGCACA---------TGATCCACAAGG-TGGAAGGAAAAGGAG-AAT----------------CAGGATGAAG-------TATT-TTGCTGTCCCT-GAAGCAGATTCCCAAGA-TTTATACATGCAGAGAATT--CATAAAA-----------ATTT-GGGTGAGGG-CATGG--T-GACTGTTAGCAGC-----AAAGT----AAATTAGTCCCCC---AA--
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64952565 234 + 75148670 C---------TTAGAAGCAGAGAATGAAG----ATC--TTGAGTTT---TGAGTGAAAGCTGAGACCATGAC-TCCAAACTGA-GAACACACAAA-GCTGGCACA---------TGATCCACAAGG-TGGAAGGAAAAAGAG-AAT----------------CAGGATGAAG-------TATT-TTGCCGTCCAT-GAAGCAGATTCCCAAGA-TTTATACATGCAGATAATT--CATAAAA-----------ATTT-GGGTGAGGG-CATGG--T-GACTGTTAGCAGC-----AAAGT----AAATTAGTCCCCC---AA--
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2218182 234 +  4244037 C---------TTAGAAGCAGAGAACGAAG----CTC--TTGAATAT---TGAGTCAAAGCTGAGACCATGAC-CCCGAATTGA-GAACACACGAA-GCTGGCACA---------TGATCCACAAGG-TGGAAGGAAAAAGAG-AAT----------------CAGGATGAAG-------TATT-TTGCCGTCCGT-GAAGCAGATTCCCAAGA-CTCATACACGCATAGAATT--CATAAAA-----------ATTT-GGGTGAGAG-CATGG--T-GGCTGTCAGCAGC-----AAAGT----AAATTAGTCCCCC---AA--
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2216977 234 +  4569836 C---------TTAGAAGCAGAGAATGAAG----CTC--CTGAGTTT---TGAGTCAAAGCTGAGATCATGAC-TCCAAATTGA-GAACACACAAA-GCTGGCACA---------TGATCCACAAGG-TGGAAGGAAAAAGAG-AAT----------------CAGGATGAAG-------TATT-TTGCTGTCCCT-GAAGCAGATTCCCAAGA-TTTATACATGCAGAGAATT--CATAAAA-----------ATTT-AGGTGAGGG-CATGG--T-GACTGTTAGCAGC-----AAAGT----AAGTTAGTCCTCC---AA--
i colAng1.NW_012122154v1           C 0 I 195
s calJac3.chr5_ACFV01180105_random     7530 231 -    12755 C---------TGAGAAGCAGAGAATGAAG----CTC--TTGACTTT---AGAGTCAAAGCTGAGACCATGAC-TCCAAACTGA-AGACACAGGAA-CCTGGCACA---------TGTTCCACACGG-TGTAAGG----AAAG-AAT----------------CAGGATGAAG-------TACT-CTGCCCTCCCT-CAAGCTGATTCACAAGATTTTAAACATGGAGAGAATT--CATAAAA-----------ACGT-GGGTGAGAG-TATGG--T-GGTGGTCAGCAGC-----AAAGT----AAATTACTTCCCC---AA--
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1874397 216 +  3513951 C---------TGTGAAACAGAGAATGAAG----CTC--TTGACTTT---AGAGTCAAAGCTGAGAT-------------------------GGCA-GCTGGCACA---------TAATTCCCAAAA-TGTAAGG-AGAAGAG-AAC----------------CAGGACGAAG-------TACT-CTGCCCTCCCT-CAAGCTGATTCACAAGATTTTAAACATGCAGCaaaaa--aaaaaaagaaaaaaaaagaaaT-TGGTGAGAG-CATAC--T--GTGTTTG----------AAAGC----AAATTTGTCCCCT---GA--
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              22451 235 -  4077172 C---------TGAGAAGCAGAGAATGAAG----CTC--TTGACTTT---AGAGTCAAAGCTGAGACCATGAC-TCCAAACTGA-AGACACAGAAA-CCTGGCACA---------TGATCCACAAGG-TGTAAGGAAAAACAG-AAT----------------CAGGATGAAG-------TACT-CTGCCTTCCCT-CAAGCTGATTCAAAAGATTTTAAACATGGAGAGAATT--CATAAAA-----------ATTT-GGGTGAGAG-CATGG--T-GGCGGTCAGCAGC-----AAAGT----AAATTAGTTCCCC---AA--
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              16254 235 -    94492 C---------TGAGAAGCAGAGAATGAAG----CTC--TTGACTTT---AGAGTCAAAGCTGAGACCATAAC-TCCAAACTGA-GAACACAGGAA-GCTGTCACG---------TGATCGCCAAGG-TGTAAGGAAAAAGAG-AAT----------------CAGGATGAAG-------TATT-CTGCCTTCCCT-CATGCTGATTCACAAGATTTTAAACATGGAGAGAATT--CATAAAA-----------ATGT-GGGTGAGAG-CATGG--T-GGCAATCAGCAGC-----AAAGT----AAATTAGTTCCCG---GA--
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22894822 206 + 28711273 C---------TTAGAGTGAAAGGATAAAGAGGACTC--TT-------------CCACATCTGAGAACATGAT-GCAAGGTTAA-GAAGAGAAAAA-GTAGCCAAGAGTTGGAGCTGGTGCTCAACA-GATAAAGAGGAGAAA-AGT------------------AGATGAAG-------CACG-CTGCCCTCCAT-CAAGCGAACACTTGAGACATTTTTTAATGGGACAATC--CAAGGGT-----------AGTT--GATGATGG-CAAAGCCT-GG---------------------------------------------
i otoGar3.GL873537                 T 19683 C 0
s canFam3.chr9                     21521193 270 + 61074082 -CTAATTTAGTGATACAGATAGGATGAAG----ATC--TTGACTATGAAGGAGTCAAGGCAAAGGTCGTGAT-TCCAAATC-A-GGATGCATGAG---TGGCACA---------TGATCCATAAGA-TG-AAAGAAGAAGAG-AATAATAATCCATAAGATTAAGGAAGAAGGGATAAATGGT-CCACATTTCAT-CAAGCTTACTCATTAGCTTGTAAATAGGCAGATGAGT--GACAAAA-----------ACAT-TGGCAATTG-TATGC--T-GGCTTTGAGAAACGTTTGACAGT----AACTTTGTTTCCC---AA--
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   592965 230 -   852752 ---------ACTTGAGGTAGTGGGTGAA-----TTT--TTGATGTC---AGAGTGAAAGCTGAGGACAT----TCAATCATGT-GAATATAAGAA-G-TAACACA---------CAATCCAGATAA-TATAAGGAAAAGAAG---T----------------CAGGGTGAAA-------TAGT-CCACACTCCAT-CAAGCTGATTTATAAGCTTTTAAACATGCAGATGAAT--AACTCC------------ATTT-TGTTGAGAG-CATGC--T-GGATGTCAGT--------AAAGTCTAGAAAGTGGTTTTGT---GGGA
i dasNov3.JH570468                 C 0 C 0

a score=131622.000000
s hg38.chr17_JH159148v1_alt           56864 17 +    88070 AAGATAAGTC---AGTTGAG
s panTro5.chr17                    16367740 17 + 83181570 AAGATAAATC---AGTTGAG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16272956 17 + 83442489 AAGATAAGTC---AGTTGAG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4119810 17 +  4267968 AAGATAAGTC---AGTTGAG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109472 17 -  2193130 AAGATAAGTC---AGTTGAG
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30169631 20 - 77216781 AGGATCAGTCCCAATTGGAG
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28064173 17 - 80997621 AAGATAAGTC---AGTTGAG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2122592 17 + 10377808 AAGATAAGTC---AGTCGAG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2012795 17 -  8458610 AAGATCAGTC---AGTGGAA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64952799 17 + 75148670 AAGATAAGTC---AGTGGAA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2218416 17 +  4244037 AAGATCAGTC---AGTCGAG
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2217406 17 +  4569836 AAGATAAGTC---AGTTGAG
i colAng1.NW_012122154v1           I 195 C 0
s calJac3.chr5_ACFV01180105_random     7761 17 -    12755 AAGATAAGTC---AGTTGAG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1874613 17 +  3513951 AAGATAAGTT---AGTAGgg
i saiBol1.JH378271                 C 0 I 293
s cebCap1.NW_016107543v1              22686 17 -  4077172 AAGATAAGTC---AGTTGAG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              16489 17 -    94492 AAGACAAGTC---AGTTGAG
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22895028 15 + 28711273 AGAGTGATTT---TGTTG--
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21521463  9 + 61074082 ACAGCAATT-----------
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   593195 16 -   852752 ATGACGGGTC---AGTTGA-
i dasNov3.JH570468                 C 0 C 0

a score=1215908.000000
s hg38.chr17_JH159148v1_alt           56881 117 +    88070 CAGAA----AGTTGTTGTGTG-AGGAT--GGTGGTTCT---CTTGGGACTTGATCAGCAGCAAAAAGGCTG---ACAGCAGCTGGACACA------------------CAGGTGGGCT---GGAAGCAA----------------GT-GGTCTCACAGCAGGCTGGGC
s panTro5.chr17                    16367757 132 + 83181570 CTGAA----GGTTGTTGTGTG-AGGAT--GGTAGTTCT---CTTAGGAGTTGATCAGCAGCAAGAAGGCTG---GCAGCAGCTGGACACA------------------CAGGTGGGCT---GGAAGCAAGTGGTCCTG-CAGCAGGT-GGTCTCACGGCAGGCTGGGC
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16272973 132 + 83442489 CAGAA----AGTTGTTGTGTG-AGGAT--GGTGGTTCT---CTTGGGACTTGATCAGCAGCAAGAAGGCTG---GCAGCAGCTGTACACA------------------CAGGTGGGCT---GGAAGCAAGTGGTCCTG-CAGCAAGT-GGTCTCACAGCAGGCTGGGC
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4119827 132 +  4267968 CAGAA----AGTTGTTGTGTG-AGGAT--GGTGGTTCT---CTTGGGACCTGATCAGCAGCAAAAAGGCTG---ACAGCAGCTGTACACA------------------CAGGTGGGCG---GGAAGCAAGTGGTCCTG-CAGCAGGT-GGTCTCACAgcaggctgggc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109489 128 -  2193130 CAGAG--------GTTGTGTG-AGGAT--GGTAGTTCT---CTTGGGAGTTGATCAGCAGCAAGAAGGCTG---GCAGCAGCTGGACACA------------------CAGGTGGGCT---GGAAGCAAGTGGTCCTG-CAGCAGGT-GGTCTCACAGCAGGCTGGGC
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30169651 137 - 77216781 CAGAA----GGTTCTTGTGTT-AGGGACGGGTGGTTCT---CTTGGGATGTTATCAACAGCAAGAAGGCTG---GCAGCAGTT-GTCACA------------------CAGGGTGGCCTTGGAAAGCAAGTGGTCCTGCCAGCAGGT-GGTCTCACAGCAGGCTGGGC
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28064190 130 - 80997621 CAGCA----AGTTGT--TGTG-AGGAC--GGTGGTTCT---CTTGAGACTTAATCAGCAGCAAGAAGGCTG---GCAGCAGCTGGACACA------------------CAGGTGGGCT---GGAAGCAAGTGGTCCTG-CAGCAGGT-GGTCTCACAGCAGGCTGGGC
i macFas5.chr16                    C 0 I 1
s macNem1.NW_012014910v1            2122609 132 + 10377808 CAGAA----AGTTCTTGTGTG-AGGAC--GGTGGTTCT---CTTGGGACTTGATCAGCAGCAAGAAGGCTG---GCAGCAGTTGGTCACA------------------CAGGTGGGCT---GGAAGCAAGTGGTCCTG-CAGCAGGT-GGTCTCACAGCAGGCTGGGC
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2012812 130 -  8458610 CAGCA----AATTGT--TGTG-AGGAT--GGTGGTTCT---CTTGGGACTTGATCAGCAGCAAGAAGGCTG---GCAGCAGCTGGACACA------------------CAGGTGGGCT---GGAAGCAAGTGGTCCTG-CAACAGGT-GGTCTCACAGCAGGCTGGGC
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64952816 133 + 75148670 CAGCA----AATTGT--TGTG-AGGAT--GGTGGTTTT---CTTGGGACTTGATCAGCAGCAAGAAGGCTGGCAGCAGCAGCGGGACACA------------------CAGGTGGGCT---GGAAGCAAGTGGTCCTG-CAGCAGGT-GGTCTCACAGCAGGCTGGGC
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2218433 132 +  4244037 CAGAA----AGTTGTTGTGTG-AGGAC--GGTGGTTCT---CTTGGGACTTGATCAGCAGCAGGAAGGCTG---GCAGCAGTTGGTCACA------------------CAGGTGGGCT---GGAAGCAAGTGGTCCTG-CAGCAGGT-GGTCTCACAGCAGGCTGGGC
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2217423 130 +  4569836 CATCA----AGTTGT--TGTG-AGGAC--CGTGGTTCT---CTTGGGACTTGATCAGCAGCAAGAAGGCTG---GCAGCAGCTGGACACA------------------CAGGTGGGCT---GGAAGCAAGTGGTCCTG-CAGCAGGT-GGTCTCACAGCAGGCTGGGC
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     7778 132 -    12755 CAGAA----GGCTGTTGTGTG-AGGAT--GGTGGTCCT---CTTGGGAGTTGATCAGCAGCAAGAAGGCTG---GCAGCAGCTGGACACA------------------CAGGTGGGCT---GGCAGCAGGTGGTCCTG-CAGCAGGT-GGTCTCACAGCAGGCTGGGC
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1874923 132 +  3513951 CAGAA----GATTGCTGTATA-AGGAT--GATGGTCCT---TGGCAATGCTGATCAGCAGCAGGAAGGCTG---GCAGCAGCTGGTTACA------------------CAGGTGGGCT---GGCAGCAAGTGGTCCTG-CAGCAGGT-GGTCTCACAGCAGGCTGGGC
i saiBol1.JH378271                 I 293 C 0
s cebCap1.NW_016107543v1              22703 132 -  4077172 CAGAA----GGCTGTTGTGTG-AGGAT--GGTGGTTTT---CTTGGGAGTTGATCAGCAGCAAGAAGGCTG---GCAGCAGCTGGACACA------------------CAGGTGGGCT---GGCAGCAGGTGGTCCTG-CAGCAGGT-GGTCTCACAGCAGGCTGGGC
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              16506 132 -    94492 CAGAA----GGCTGTTGTGTG-AGGAT--GGTGGTTCT---CTTGGGAGTTGATCAGCAGCAAGAAGGCTG---GCAGCAGGTGGTCACA------------------CAGGTGGGCC---GGCAGCAGGTGGTCCTG-CAGCAGGT-GGTCTCACAGCAGGCTGGGC
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22895043  72 + 28711273 CAGGACCTGGGTTGGGGGATGCAAAAC--TGGAATGTG---GCAGGTGCTTGGTCTTCAGCAAGAGTGTTG-----ATCAGC--------------------------------------------------------------------------------------
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21521472  96 + 61074082 -----------TTTTTTTTTT-CCGAT--GATGGCTCTAGGCATGGCA----ATCAACAGCAGGAAGGCTG---GCAGCAG----------------------------------------GG---------GTCCTA-CAATAGGTAGGTGTTGCAGTATGGTGGA-
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   593211 149 -   852752 TAGAA----GGTTGGTCTGTG-CACTT--GGTGGTTTT----TGGCCAGTTGATCAGCAGCAGGAAGGCTG---ACAGCAACTGGACACACAGCAAGGGCTGCTGCAGCAGCTGGGGT---GGCAGCAGGTGGTTCTA-CAGCAGGT-GGTGTGACAGCAGGATGGGT
i dasNov3.JH570468                 C 0 C 0

a score=13073.000000
s hg38.chr17_JH159148v1_alt           56998 1 +    88070 G
s panTro5.chr17                    16367889 1 + 83181570 G
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273105 1 + 83442489 G
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4119959 1 +  4267968 g
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109617 1 -  2193130 G
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30169788 1 - 77216781 G
i rheMac8.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2122741 1 + 10377808 G
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2012942 1 -  8458610 G
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64952949 1 + 75148670 G
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2218565 1 +  4244037 G
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2217553 1 +  4569836 G
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     7910 1 -    12755 G
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1875055 1 +  3513951 G
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              22835 1 -  4077172 G
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              16638 1 -    94492 G
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22895115 1 + 28711273 A
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21521568 1 + 61074082 G
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   593360 1 -   852752 G
i dasNov3.JH570468                 C 0 C 0
e macFas5.chr16                    28064320 1 - 80997621 I

a score=541245.000000
s hg38.chr17_JH159148v1_alt           56999 39 +    88070 GCAGCAGGGCTGGCAGCAGTTGGAGCCACAGCTCTGGTT
s panTro5.chr17                    16367890 39 + 83181570 GCAGCAGGGCTGGCAGCAGTTGGAGTCACAGCTCTGGTT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273106 39 + 83442489 GCAGCAGGGCTGGCAGCAGTTGGAGCCACAGCTCTGGTT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4119960 39 +  4267968 gcagcagggctggcagcagctggagccacagctcaggtt
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109618 39 -  2193130 GCAGCAGGGCTGGCAGCAGCTGGAGCCACAGTTCTGGTT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30169789 38 - 77216781 GCAGCAGGGCTGGCAGCAGCTGGATCCATAGCTCT-GTT
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28064321 39 - 80997621 GCAGCAGGGCTGGCAGCAGCTGGATCCATAGCTCTGGTT
i macFas5.chr16                    I 1 C 0
s macNem1.NW_012014910v1            2122742 39 + 10377808 GCAGCAGGGCTGGCAGCAGCTGGATCCATAGCTCTGGTT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2012943 39 -  8458610 GCAGCAGGGCTGGCAACAGCTGGATCCATAGCTCTGGTC
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64952950 39 + 75148670 GCAGCAGGGCTGGCAGCAGTTGGATCCATAGCTCTGGTT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2218566 39 +  4244037 GCAGCAGGGCTGGCAGCAGCTGGATCCATAGCTCTGGTT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2217554 39 +  4569836 GCAGCAGGGCAGGCAGCAGCTGGATCCATAGCTCTGGTT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     7911 39 -    12755 GCAGCAGGGCTGGCAGCAGCTGGATCCACAGCTCTGGTT
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1875056 39 +  3513951 GCAGCAGGGCTGGCAGCAGCTGGATCCACAGCTCTGGTT
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              22836 39 -  4077172 GCAGCAGGGCTGGCAGCAGCTGGATCCACAGCTCTGGTT
i cebCap1.NW_016107543v1           C 0 T 6167
s aotNan1.NW_018505111v1              16639 39 -    94492 GCAGCAGGGCTGGCAGCAGCTGGATCCACAGCTCTGGTT
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22895116 39 + 28711273 GCAGGAAGGCTGGCAGCAGCTGGATCCACAGCCCAGGTT
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21521569 39 + 61074082 GAAGCAAGGATGGCAGCAGCTGGATCTGAAGCCCTGGGC
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   593361 39 -   852752 GCAGCAAGGCTGGCAGCAGCTGGATCCGCAGCTCTGGTG
i dasNov3.JH570468                 C 0 C 0

a score=309106.000000
s hg38.chr17_JH159148v1_alt           57038 22 +    88070 TAGGCAACCAGGCAGGCAGACA
s panTro5.chr17                    16367929 22 + 83181570 TAGGCAACCAGGCAGACAGACA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273145 22 + 83442489 GAGGCAACCAGGCAGGCAGACA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4119999 22 +  4267968 taggcaaccaggcaggcagaca
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109657 22 -  2193130 TAGGCAACCAGGCAGGCAGACA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30169827 22 - 77216781 TAGGCAACCAGGCAGGCAGACA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28064360 22 - 80997621 TAGGCAACCAGGCAGGCAGACA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2122781 22 + 10377808 TAGGCAACCAGGCAGGCAGACA
i macNem1.NW_012014910v1           C 0 I 3719
s cerAty1.NW_012006043v1            2012982 22 -  8458610 TAGGCAACCAGGCAGGCAGACA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64952989 22 + 75148670 TAGGCAACCAGGCAGGCAGACA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2218605 22 +  4244037 TAGGCAACCAGGCAGGCAGACA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2217593 22 +  4569836 TAGGCAACCAGGCAGGCAGACA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     7950 22 -    12755 TAGGCAACCAGGCAGGCAGACA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1875095 22 +  3513951 CAGGCAACCGGGCAGGCAGACA
i saiBol1.JH378271                 C 0 I 12313
s cebCap1.NW_016107543v1              16708 22 -  4077172 TAGGCAACCAGGCAGGCAGACA
i cebCap1.NW_016107543v1           T 6167 C 0
s aotNan1.NW_018505111v1              16678 22 -    94492 TAGGCAACCAGGCAGGCAGACA
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22895155 22 + 28711273 CAGACAGCCAGGCAGGCAGACA
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21521608 21 + 61074082 TAGGCATCCAGGCAGGTAAAA-
i canFam3.chr9                     C 0 I 1
s dasNov3.JH570468                   593400 22 -   852752 TTGGCAGCCAGGCAGGCAGCAG
i dasNov3.JH570468                 C 0 C 0

a score=87735.000000
s hg38.chr17_JH159148v1_alt           57060 11 +    88070 GTTGTGGGGTA
s panTro5.chr17                    16367951 11 + 83181570 CTTGTGGGGTG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273167 11 + 83442489 GTTGTGGGGTA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120021 11 +  4267968 gTCGTGGGGTA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109679 11 -  2193130 GTCGTGGGGTA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30169849 11 - 77216781 CATGTGGGGTG
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28064382 11 - 80997621 CATGTGGGGTG
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2013004 11 -  8458610 CATGTGGGGTG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64953011 11 + 75148670 CATGTGGGGTG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2218627 11 +  4244037 CACGTGGGGTG
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2217615 11 +  4569836 CATGTGGGGTG
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     7972 11 -    12755 CACATGGGGTG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1887430 11 +  3513951 CACGTGGGGTG
i saiBol1.JH378271                 I 12313 C 0
s cebCap1.NW_016107543v1              16730 11 -  4077172 CATGTGGGATG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              16700 11 -    94492 CACGTGGGGTG
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22895177 11 + 28711273 CAGGTGGGCTG
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21521630 10 + 61074082 CAGGTAGGCT-
i canFam3.chr9                     I 1 C 0
s dasNov3.JH570468                   593422 11 -   852752 CATGTTGGATG
i dasNov3.JH570468                 C 0 C 0
e macNem1.NW_012014910v1            2122803 3719 + 10377808 I

a score=551433.000000
s hg38.chr17_JH159148v1_alt           57071 49 +    88070 GTAGCAGGTTCTTCTGCAGTACACA-GG-----TG-CA-------------------------CAG-GAGCTGCTCTGGTCA------------
s panTro5.chr17                    16367962 49 + 83181570 GTAGCAGGTTCTTCTGCAGTACACA-GG-----TG-CA-------------------------CAG-GAGCTGCTCTGACCA------------
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273178 49 + 83442489 GTAGCAGGTTCTTCTGCAGTACACA-GG-----TG-CA-------------------------CAG-GAGCTGCTCTGGTCA------------
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120032 49 +  4267968 GTAGCAGGTTCTTCTGCAGTACACA-GG-----TG-CA-------------------------CAG-GAGCTGCTCTGGTCA------------
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109690 49 -  2193130 GTAGCAGGTTCTTCTGCAGTACACA-GG-----TG-CA-------------------------CAG-GAGCTGCTCTGGCAA------------
i nomLeu3.chrUn_GL397460_1         C 0 I 30
s rheMac8.chr16                    30169860 49 - 77216781 GTAGCAGGTTCTTCTGCAGTAGACA-GG-----GG-CA-------------------------CAG-GAGCTGATCTGGCCA------------
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28064393 49 - 80997621 ATAGCAGGTTCTTCTGCAGTAGACA-GG-----TG-CA-------------------------CAG-GAGCTGGTCTGGCCA------------
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2126522 50 + 10377808 GTAGCAGGTCCTTCTGCA-TAGACAGGG-----TGCCA-------------------------CAG-GAGCTGATCTGCGCA------------
i macNem1.NW_012014910v1           I 3719 C 0
s cerAty1.NW_012006043v1            2013015 49 -  8458610 GTAGCAGGTCCTCCTGCAGTAGACA-GG-----TG-CA-------------------------CAG-GAGCTGGTCTGGCCA------------
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64953022 49 + 75148670 GTAGCAGGTCCTCCTGCAGTAGACA-GG-----TG-CA-------------------------CAG-GAGCTGGTCTGGCCA------------
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2218638 49 +  4244037 ATAGCAGGTCCTCCTGCAGTAGACA-GG-----TG-CA-------------------------CAG-GAGCTGGTCTGGCCA------------
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2217626 49 +  4569836 ATAGCAGGTTCTTCTGCAGTAGACA-GG-----TG-CA-------------------------CAG-GAGCTGGTCTGGCCA------------
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     7983 49 -    12755 GTAGCAGGTTCTCGTACAGTACACA-GG-----TG-CA-------------------------CAG-GAGCTGGTCTGGCCA------------
i calJac3.chr5_ACFV01180105_random C 0 I 3
s saiBol1.JH378271                  1887441 49 +  3513951 GTAGCAGGTTCTCGTGCAGTACACA-GG-----TG-CA-------------------------CAG-GAGCTGGTCTGGCCA------------
i saiBol1.JH378271                 C 0 T 18821
s cebCap1.NW_016107543v1              16741 49 -  4077172 GTAGCAGGTTCTGCTACAGTACACA-GG-----TG-CA-------------------------CAG-GAGCTGGTCTGGCCA------------
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              16711 49 -    94492 ATAGCAGGTTCTCCTGCAGTACACA-GG-----TG-CA-------------------------CAG-GAGCTGGTCTGGCCA------------
i aotNan1.NW_018505111v1           C 0 I 18
s otoGar3.GL873537                 22895188 49 + 28711273 GTAGCAGGTCCTGGTGCAGTAGACA-GG-----TG-CA-------------------------CAG-CTGCTGGGCTGGCAG------------
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21521640 49 + 61074082 GTAAGAGGTTCTACTATAGTACACA-GG-----TG-CA-------------------------CAGCAAGCTGG-CTGGCAA------------
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   593433 91 -   852752 GTAGCAGGTTCTCTGGCAGTACACA-GGGCCACTG-CAAGCTGGCTGGCAGGAGGTTGTGTAGCAG-CAACTGGGGTGGCAGCAAGGCTGGTAG
i dasNov3.JH570468                 C 0 C 0

a score=138091.000000
s hg38.chr17_JH159148v1_alt           57120 10 +    88070 CAGCTGGACC
s panTro5.chr17                    16368011 10 + 83181570 CAGCTGGACC
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273227 10 + 83442489 CAGCTGGACC
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120081 10 +  4267968 CAGCTGGACC
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109769 10 -  2193130 CAGCTGGACC
i nomLeu3.chrUn_GL397460_1         I 30 C 0
s rheMac8.chr16                    30169909 10 - 77216781 CAGCTGGACC
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28064442 10 - 80997621 CAGCTGGACC
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2126572 10 + 10377808 CAGCTGGACC
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013064 10 -  8458610 CAGCAGGACC
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64953071 10 + 75148670 CAGCAGGACC
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2218687 10 +  4244037 CAGCTGGACC
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2217675 10 +  4569836 CAGCTGGACC
i colAng1.NW_012122154v1           C 0 I 129
s calJac3.chr5_ACFV01180105_random     8035 10 -    12755 CAGCTGGACC
i calJac3.chr5_ACFV01180105_random I 3 C 0
s saiBol1.JH378271                  1868669 10 +  3513951 CAGCTGGACA
i saiBol1.JH378271                 T 18821 C 0
s cebCap1.NW_016107543v1              16790 10 -  4077172 CAGCTGGACC
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              16778 10 -    94492 CAGCTGGACC
i aotNan1.NW_018505111v1           I 18 C 0
s otoGar3.GL873537                 22895237 10 + 28711273 CAGGAGGTGC
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21521689 10 + 61074082 CAGCTGGACC
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   593524 10 -   852752 CAGCTGGATC
i dasNov3.JH570468                 C 0 C 0

a score=93025.000000
s hg38.chr17_JH159148v1_alt           57130 6 +    88070 CACAGC
s panTro5.chr17                    16368021 6 + 83181570 CACAGC
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273237 6 + 83442489 CACAGC
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120091 6 +  4267968 CACAGC
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109779 6 -  2193130 CACAGC
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30169919 6 - 77216781 CACAGC
i rheMac8.chr16                    C 0 I 30
s macFas5.chr16                    28064452 6 - 80997621 CACAGC
i macFas5.chr16                    C 0 I 15803
s macNem1.NW_012014910v1            2126582 6 + 10377808 CACAGC
i macNem1.NW_012014910v1           C 0 I 29
s cerAty1.NW_012006043v1            2013074 6 -  8458610 CACAGC
i cerAty1.NW_012006043v1           C 0 I 30
s chlSab2.chr16                    64953081 6 + 75148670 CACAGC
i chlSab2.chr16                    C 0 I 30
s manLeu1.NW_012106252v1            2218697 6 +  4244037 CACAGC
i manLeu1.NW_012106252v1           C 0 I 30
s colAng1.NW_012122154v1            2217814 6 +  4569836 CACAGC
i colAng1.NW_012122154v1           I 129 C 0
s calJac3.chr5_ACFV01180105_random     8045 6 -    12755 CGCAGC
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1868679 6 +  3513951 CACAGC
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              16800 6 -  4077172 CACAGC
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              16788 6 -    94492 CGCAGC
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22895247 6 + 28711273 CACAGC
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21521699 6 + 61074082 CACAGT
i canFam3.chr9                     C 0 I 2
s dasNov3.JH570468                   593534 6 -   852752 CACAGC
i dasNov3.JH570468                 C 0 C 0

a score=6990.000000
s hg38.chr17_JH159148v1_alt           57136  3 +    88070 ------------AGG------------------
s panTro5.chr17                    16368027  3 + 83181570 ------------AGG------------------
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273243  3 + 83442489 ------------AGG------------------
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120097  3 +  4267968 ------------AGG------------------
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109785  3 -  2193130 ------------AGG------------------
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30169955  3 - 77216781 ------------AGG------------------
i rheMac8.chr16                    I 30 C 0
s macFas5.chr16                    28080261  3 - 80997621 ------------AGG------------------
i macFas5.chr16                    I 15803 C 0
s macNem1.NW_012014910v1            2126617  3 + 10377808 ------------CAG------------------
i macNem1.NW_012014910v1           I 29 C 0
s cerAty1.NW_012006043v1            2013110  3 -  8458610 ------------AGG------------------
i cerAty1.NW_012006043v1           I 30 C 0
s chlSab2.chr16                    64953117  3 + 75148670 ------------AGG------------------
i chlSab2.chr16                    I 30 C 0
s manLeu1.NW_012106252v1            2218733  3 +  4244037 ------------AGG------------------
i manLeu1.NW_012106252v1           I 30 C 0
s colAng1.NW_012122154v1            2217820  3 +  4569836 ------------AGG------------------
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8051  3 -    12755 ------------AGG------------------
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1868685  3 +  3513951 ------------AGG------------------
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              16806  3 -  4077172 ------------AGG------------------
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              16794  3 -    94492 ------------AGG------------------
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22895253  3 + 28711273 ------------AAG------------------
i otoGar3.GL873537                 C 0 I 19742
s canFam3.chr9                     21521707  1 + 61074082 ------------A--------------------
i canFam3.chr9                     I 2 C 0
s dasNov3.JH570468                   593540 33 -   852752 AGATTTGGCCACAGGAGCTGGATCCACTGCTGG
i dasNov3.JH570468                 C 0 C 0

a score=510627.000000
s hg38.chr17_JH159148v1_alt           57139 49 +    88070 TGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAAGGCTGGCAGCAGCTGGT
s panTro5.chr17                    16368030 49 + 83181570 TGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAAGGCTGGCAGCAGCTGGT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273246 49 + 83442489 TGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAAGGCTGGCAACAGCTGGT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120100 49 +  4267968 TGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAAGGCTGGCAGCAGCTGGT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109788 49 -  2193130 TGGGCTGGCAGCAGGGTGTGCTGCAACAGGAAGGCTGGCAGCAGCTGGT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30169958 49 - 77216781 TGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAAGGCTGGCAGCAGCTGGT
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28080264 49 - 80997621 TGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAAGGCTGGCAGCAGCTGGT
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2126620 49 + 10377808 TGGGCTGGCAGCAGGGCGTGCTGCAGCAGGAAGGTGGCAGGCCGCTGGT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013113 49 -  8458610 TGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAAGGCTGACAGCAGCTGGT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64953120 19 + 75148670 TGGGCTGG------------------------------CAGCAGCTGGT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2218736 49 +  4244037 TGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAAGGCTGACAGCAGCTGGT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2217823 49 +  4569836 AGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAAGGCTGGCAGCAGCTGGT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8054 49 -    12755 TGGGCTGGCAGCAGGGTGTGCTGCAGCAGGAAGGCTGGCAGCAGCTGGT
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1868688 34 +  3513951 AGGGCTGGCAGCAGGGTGTGCT---------------GCTGCAGCTGGT
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              16809 49 -  4077172 TGGGCTGACAGCAGGGTGTGCTACAGCAGGAAGGCTGGCAGCAGCTGGT
i cebCap1.NW_016107543v1           C 0 T 11918
s aotNan1.NW_018505111v1              16797 49 -    94492 TGGGCTGGCAGCAAGGCGTGCTGCAGCACGAAGGCTGGCAGCAGCTGGT
i aotNan1.NW_018505111v1           C 0 I 27
s otoGar3.GL873537                 22914998 47 + 28711273 TGGGCTGGCAGCAGGGTGTGCGGCAGCAGGTGG--TGACAGAGGTGGGT
i otoGar3.GL873537                 I 19742 I 2
s canFam3.chr9                     21521708 33 + 61074082 TTGGTTCATAGC------TACTG---------GACTCACAGCAGCTGA-
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   593573 49 -   852752 TAGCCTGGCAGCAGGGAGTGCTGCAAAAGGAAGGGCTGCAGCAGCTGGT
i dasNov3.JH570468                 C 0 C 0

a score=613941.000000
s hg38.chr17_JH159148v1_alt           57188 50 +    88070 CACACAGGTGGGCTGG---------------CAGCAGGTGTTTTGACAGCAAGTT----GGGCGGCAGC
s panTro5.chr17                    16368079 65 + 83181570 CACACAGGTGGGCTGGCAGCAGGTGGTCCTACAGCAGGTGTTTTGACAGCAAGTT----GGGTGGCAGC
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273295 50 + 83442489 CACACAGGTGGGCTGG---------------CAGCAGGTGTTTTGACAGCAAGTT----GGGCGGCAGC
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120149 50 +  4267968 CACACAGGTGGGCTGG---------------CAGCAGGTGTTTTGACAGCAAGTT----GGGCGGCAGC
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109837 65 -  2193130 CACACAGGTGGGCTGGCAGCAGGTGGTCCTGCAGCAGGTGTTTTGACAGCAAGTT----GGGTGACAGC
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170007 50 - 77216781 CACACAGGTGGGCTGG---------------CAGCAAGTGTTTTGACAGCAAGTT----GGGCGGCAGC
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28080313 50 - 80997621 CACACAGGTGGGCTGG---------------CAGCAAGTGTTTTGACAGCAAGTT----GGGCGGCAGC
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2126669 53 + 10377808 CACACAGGTGGGCTGG---------------CAGCAAGTGTTTTGACA-CAAGTTTTGCGGCTGGCAGC
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013162 50 -  8458610 CACACAGATGGGCTGG---------------CAGCAGGTGTTTTGACAGCAAATT----GGGTGGCAGC
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64953139 50 + 75148670 CACACAGGTGGGCTGG---------------CAGCAGGTGTTTTGACAGCAACTT----GGGTGACAGC
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2218785 50 +  4244037 CACACAGGTGGGCTGG---------------CAGCAGGTGTTTTGACAGCAAGTT----GGGCGGCAGC
i manLeu1.NW_012106252v1           C 0 I 8078
s colAng1.NW_012122154v1            2217872 50 +  4569836 CACACAGGTGGGCTGG---------------CAGCAGGTGTTTTGACAACAAATT----GGGCGGCAGC
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8103 65 -    12755 CACACAGGTGGGCTGGCAGCAGGTGGTCCCGCAGCAGGTGTTTTGACAGCAAGTT----GGGCGGCAGC
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1868722 65 +  3513951 CACACAGGTGGGCTTCCAGCAGGTAGTCCTGCAGCAGGTGTTTTGACAGCAAGTT----GGGCGGCAGC
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1               4940 65 -  4077172 CACACAGGTGGGCTGGCAGCAGGTGGTCCTGCAGCAGGTGTTTTGACAGCAAGTT----GGGCGGCAGC
i cebCap1.NW_016107543v1           T 11918 C 0
s aotNan1.NW_018505111v1              16873 65 -    94492 CACACAGGTGGGCTGGCAACAGGTGGTCCTGCAGCAGGTGTTTTGACAGCAAGTT----GGGCGGCAGC
i aotNan1.NW_018505111v1           I 27 C 0
s otoGar3.GL873537                 22915047 50 + 28711273 CCAGCAGGTGGTCCTG---------------CAGCAGGTGGTTGGACAGCAAGTT----GGGGGGCAGC
i otoGar3.GL873537                 I 2 C 0
s canFam3.chr9                     21521741 49 + 61074082 -GAGCAGGTAGACCTT---------------CAGCAAGTGGTTTGACTTCATGTT----GGAGGTAAGC
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   593622 65 -   852752 CACACAGGTTGGCTGGCAGCAGGTGGCCCTACTGCAGGTGGTCTGACAGCACAGT----GGGCGGCAGC
i dasNov3.JH570468                 C 0 C 0

a score=393533.000000
s hg38.chr17_JH159148v1_alt           57238 34 +    88070 AAGGCTGGCAGC-AGCTGGAAACACAGCA--------------------------GGAGGG
s panTro5.chr17                    16368144 34 + 83181570 AAGGCTGGCAGC-AGCTGGAAACACAGCA--------------------------GGAGGG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273345 34 + 83442489 AAGGCTGGCAGC-AGCTGGACACACAGCA--------------------------GGAGGG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120199 34 +  4267968 AAGGCTGGCAGC-AGCTGGAAACACAGCA--------------------------GGAGGG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109902 34 -  2193130 AAGGCTGGCAGC-AACTGGACACACAGCA--------------------------GGAGGG
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170057 34 - 77216781 AAGGCTGGCAGC-AGCTGGACACACAGCA--------------------------GGTGGG
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28080363 34 - 80997621 AAGGCTGGCAGC-AGCTGGACACACAGCA--------------------------GGTGGG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2126722 60 + 10377808 -AGGCTGGCAGCAAGCTGGACACACAGCAGAGGGGCTGGAGCAGCTGGCACAAGCGGTGGG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013212 34 -  8458610 AAGGCTGGCAGC-AGCTGGACACACAGCA--------------------------GGAGGG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64953189 34 + 75148670 AAGGCTGGCAGC-AGCTGGACACACAGCA--------------------------GGAGGG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2226913 34 +  4244037 AAGGCTGGCAAC-AGCTGGACACACAGCA--------------------------GGAGGG
i manLeu1.NW_012106252v1           I 8078 C 0
s colAng1.NW_012122154v1            2217922 34 +  4569836 AAGGCTGGCAAC-AGCTGGACACACAGCA--------------------------GGAGGG
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8168 34 -    12755 AAGGCTGGCAGC-AGCTGGACACACAGCA--------------------------GGAGGG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1868787 34 +  3513951 AAGGCTGGCAGC-AGCTGGACACACAGCA--------------------------GGAGGG
i saiBol1.JH378271                 C 0 I 18939
s cebCap1.NW_016107543v1               5005 34 -  4077172 AAGGCTGGCAGC-AGCTGGACACACAGCA--------------------------GGAGGG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              16938 34 -    94492 AAGGCTGGCAGC-AGCTGGACACACAGCA--------------------------GGAGGG
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22915097 19 + 28711273 AGGGCTGGCAGC-AGCTGGG-----------------------------------------
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21521790 28 + 61074082 AAGGCTGATAAT-AGCTGGACCCATAGCA--------------------------------
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   593687 29 -   852752 AAGGCTGGCAGC-AGCTGGACCCACAAGA--------------------------A-----
i dasNov3.JH570468                 C 0 C 0

a score=156813.000000
s hg38.chr17_JH159148v1_alt           57272 15 +    88070 CTGGCAGCAGGGTGT
s panTro5.chr17                    16368178 15 + 83181570 CTGGCAACAGGGTGT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273379 15 + 83442489 CTGGCAGCAGGGTGT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120233 15 +  4267968 CTGGCAGCAGGGTGT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109936 15 -  2193130 CTGGCAGCAGGGTGT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170091 15 - 77216781 CTGGCAGCAGGGTGT
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28080397 15 - 80997621 CTGGCAGCAGGGTGT
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2126782 15 + 10377808 CTGGCAGAAGGGTGT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013246 15 -  8458610 CTGGCAGCAGGGTGT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64953223 15 + 75148670 CTGGCAGCAGGGTGT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2226947 15 +  4244037 CTGGCAGCAGGGTGT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2217956 15 +  4569836 CTGGCAGCAGGGTGT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8202 15 -    12755 CTGGCAGCAGGGTGT
i calJac3.chr5_ACFV01180105_random C 0 C 0
s cebCap1.NW_016107543v1               5039 15 -  4077172 CTGGCAGCAGGGTGT
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              16972 15 -    94492 CTGGCAGCAGGGTGT
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22915116 15 + 28711273 CTGGCAGCAGGGTGT
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21521818  1 + 61074082 --------------T
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   593716  5 -   852752 CTGGA----------
i dasNov3.JH570468                 C 0 C 0
e saiBol1.JH378271                  1868821 18939 +  3513951 I

a score=56278.000000
s hg38.chr17_JH159148v1_alt           57287 5 +    88070 GCTGC
s panTro5.chr17                    16368193 5 + 83181570 GCTGC
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273394 5 + 83442489 GCTGC
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120248 5 +  4267968 GCTTC
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109951 5 -  2193130 GCTGC
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170106 5 - 77216781 GCTGC
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28080412 5 - 80997621 GCTGC
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2126797 5 + 10377808 GTTGC
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013261 5 -  8458610 GCTGC
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64953238 5 + 75148670 GCTGC
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2226962 5 +  4244037 GCTGC
i manLeu1.NW_012106252v1           C 0 T 34404
s colAng1.NW_012122154v1            2217971 5 +  4569836 GCTGC
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8217 5 -    12755 GCTGC
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1887760 5 +  3513951 GCTGC
i saiBol1.JH378271                 I 18939 C 0
s cebCap1.NW_016107543v1               5054 5 -  4077172 GCTGC
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              16987 5 -    94492 GCTGC
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22915131 5 + 28711273 GCTGC
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21521819 3 + 61074082 GTT--
i canFam3.chr9                     C 0 C 0
e dasNov3.JH570468                   593721 0 -   852752 C

a score=77666.000000
s hg38.chr17_JH159148v1_alt           57292 12 +    88070 T---------------------------GCAGG---TGGTCA
s panTro5.chr17                    16368198 12 + 83181570 T---------------------------GCAGG---TGGTCA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273399 12 + 83442489 T---------------------------GCAGG---TGGTCA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120253 12 +  4267968 T---------------------------GCAGG---TGGTCA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109956 12 -  2193130 G---------------------------GCAGG---TGGTCA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170111 12 - 77216781 T---------------------------GCAGG---TGGTCA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28080417 12 - 80997621 T---------------------------GCAGG---TGGTCA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2126802 15 + 10377808 T---------------------------GCCAGGCTTGGTCA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013266 12 -  8458610 T---------------------------GCAGG---TGGTCA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64953243 12 + 75148670 T---------------------------GCAGG---TGGTCA
i chlSab2.chr16                    C 0 I 2954
s manLeu1.NW_012106252v1            2192563 12 +  4244037 T---------------------------GCAGG---TGGTCA
i manLeu1.NW_012106252v1           T 34404 C 0
s colAng1.NW_012122154v1            2217976 12 +  4569836 T---------------------------GCAGG---TGGTCA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8222 12 -    12755 A---------------------------GCAGC---TGGTCA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1887765 12 +  3513951 T---------------------------GCAGC---TGGTCA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1               5059 12 -  4077172 T---------------------------GCAGC---TGGTCA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              16992 39 -    94492 TGCATGTGGTCACACAGGTGGGCTGGCAGCAGC---TGGTCG
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22915136  9 + 28711273 ---------------------------AGCAGG---TGG---
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21521822  6 + 61074082 ------------------------------------TGTCCA
i canFam3.chr9                     C 0 C 0
e dasNov3.JH570468                   593721  0 -   852752 C

a score=80919.000000
s hg38.chr17_JH159148v1_alt           57304 14 +    88070 C-AGTG-GTGGGCTT-C
s panTro5.chr17                    16368210 14 + 83181570 C-AGTG-GTGGGCTG-C
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273411 14 + 83442489 C-AGTG-GTGGGCTT-C
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120265 14 +  4267968 C-AGTG-GTGGGCTT-C
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109968 14 -  2193130 C-AGTT-GTGGGCTG-C
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170123 14 - 77216781 C-ACAG-GTGGGCTT-C
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28080429 14 - 80997621 C-ACAG-GTGGGCTT-C
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2126817 17 + 10377808 CAACAGAGTGGGCTTCC
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013278 14 -  8458610 C-ACAG-GTGGGCTT-C
i cerAty1.NW_012006043v1           C 0 C 0
s manLeu1.NW_012106252v1            2192575 14 +  4244037 C-ACAG-GTGGGCTT-C
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2217988 14 +  4569836 C-AGTG-GTGGGCTT-C
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8234 14 -    12755 C-ACAG-GTGGGCTT-C
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1887777 14 +  3513951 C-ACAG-GTGGGCTT-C
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1               5071 14 -  4077172 C-ACAG-GTGGGCTT-C
i cebCap1.NW_016107543v1           C 0 I 18115
s aotNan1.NW_018505111v1              17031 14 -    94492 C-ACAG-GTGGGCTT-C
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22915145  5 + 28711273 -----------GCCT-C
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21521828 14 + 61074082 C-AGCT-ACTGGTTC-C
i canFam3.chr9                     C 0 I 1
e dasNov3.JH570468                   593721  0 -   852752 C
e chlSab2.chr16                    64953255 2954 + 75148670 I

a score=144847.000000
s hg38.chr17_JH159148v1_alt           57318 13 +    88070 CAGCAGG--TGGTCC
s panTro5.chr17                    16368224 13 + 83181570 CAGCAGG--TGGTCC
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273425 13 + 83442489 CAGCAGG--TGGTCC
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120279 13 +  4267968 CAGCAGG--TGGTCC
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109982 13 -  2193130 CAGCAGG--TGGTCC
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170137 13 - 77216781 CAGCAGG--TGGTCC
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28080443 13 - 80997621 CAGCAGG--TGGTCC
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2126834 15 + 10377808 CAGCAGGCCTGGTCC
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013292 13 -  8458610 CAGCAGG--TGGTCC
i cerAty1.NW_012006043v1           C 0 C 0
s manLeu1.NW_012106252v1            2192589 13 +  4244037 CAGCAGG--TGGTCC
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218002 13 +  4569836 CAGCAGG--TGGTCC
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8248 13 -    12755 CAGCAGG--TGGTCC
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1887791 13 +  3513951 CAGCAGG--TGGTCC
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              23200 13 -  4077172 CAGCAGG--TGGTCC
i cebCap1.NW_016107543v1           I 18115 C 0
s aotNan1.NW_018505111v1              17045 13 -    94492 CAGCAGG--TGGTCC
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22915150 13 + 28711273 CAGCAGG--TGGTCC
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21521843 13 + 61074082 AAGCAGG--TAGGCT
i canFam3.chr9                     I 1 C 0
s dasNov3.JH570468                   593721  2 -   852752 -------------CC
i dasNov3.JH570468                 C 0 C 0
e chlSab2.chr16                    64953255 2954 + 75148670 I

a score=261045.000000
s hg38.chr17_JH159148v1_alt           57331 24 +    88070 TGCAGCAGGTGGTCCTGCAGCATG
s panTro5.chr17                    16368237  9 + 83181570 TGCAGCAG---------------G
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273438 24 + 83442489 TGCAGCAGGTGGTCCTGCAGCACG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120292 24 +  4267968 TGCAGCAGGTGGTCCTGCAGCACG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2109995  9 -  2193130 TGCAGCAG---------------G
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170150 24 - 77216781 TGCAGCAGGTGGTCCTGCAGCACG
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28080456 24 - 80997621 TGCAGCAGGTGGTCCTGCAGCACG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2126849 24 + 10377808 TGCAGCAGGTGGTCCTGCAGCACG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013305 24 -  8458610 TGCAGCAGGTGGTCCTGCAGCATG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64956209 24 + 75148670 TGCAGCAGGTGGTCCTGCAGCATG
i chlSab2.chr16                    I 2954 C 0
s manLeu1.NW_012106252v1            2192602 24 +  4244037 TGCAGCAGGTGGTCCTGCAGCACG
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218015 24 +  4569836 TGCAGCAGGTGGTCCTACAACACG
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8261 24 -    12755 TGCAGCAGGTGGTCCGGCAGCACG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1887804 24 +  3513951 TGCAGCAGGTGGTCCTGCAGCACG
i saiBol1.JH378271                 C 0 T 12289
s cebCap1.NW_016107543v1              23213 24 -  4077172 TGCAGCAGGTGGTCCTGCAGCACG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              17058 24 -    94492 TGCAGCAGGTGGTCCTGCAGCACG
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22915163 24 + 28711273 TACAGCAGGTTGTCCTGCAGCAGG
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21521856 24 + 61074082 GGCAGCAGATGGTCCCATGACACA
i canFam3.chr9                     C 0 C 0
s dasNov3.JH570468                   593723 24 -   852752 CACAACAGGTGGACTGGCAGCAGG
i dasNov3.JH570468                 C 0 C 0

a score=828782.000000
s hg38.chr17_JH159148v1_alt           57355 69 +    88070 TAGGCTGACAGCAAGGGGAGCAAC--AGT--GGG--TCATGGTGTCAGGGGTAGAGGG-TGGGCTTCTGTTCAGAG
s panTro5.chr17                    16368246 69 + 83181570 TAGGCTGACAGCAAGGGGAGCAAC--AGT--GGG--TCATGGTGTCAGGGATGGAGGG-TGGGCTTCTGTTAAGAG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273462 69 + 83442489 TAGGCTGACAGCATGGGGAGCAAC--AGT--GGG--TCATGGTGTCAGGGGTAGAGGG-TGGGCTTCTGTTCAGAG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120316 69 +  4267968 TAGGCTGACAGCAAGGGGAGCAAC--AGT--GGG--TCATGGTGTCAGGAGTAGAGGG-TGGGCTTCTGTTCAGAG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110004 69 -  2193130 TGGGCTGACAGCAAGGGGAGCAAC--AGT--AGG--TCATGGTGTCAGGGGTGGAGGG-TGGGCTTCTGTTCAGAT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170174 69 - 77216781 TAGGCTGACAGCAAGGGGAGCAAC--AGT--TGG--TCATGGTGTCAGGGGTGGAAGG-TGGGCTTCTGTTCAGAG
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28080480 69 - 80997621 TAGGCTGACAGCAAGGGGAGCAAC--AGT--TGG--TCATGGTGTCAGGGGTGGAAGG-TGGGCTTCTGTTCAGAG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2126873 72 + 10377808 TA-GCTGACAGCAAGGGGACGCAC--AGTCATGGATCCATGGTGTCAGCGTGGGAAAG-GTGGGTTCTGTTCAGAG
i macNem1.NW_012014910v1           C 0 I 1
s cerAty1.NW_012006043v1            2013329 69 -  8458610 TAGGCTGACAGCAAGGGGAGCAAC--AGT--TGG--TCATGGTGTCCGGGGTGGAGGG-TGGGCTTCTGTTCAGAG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64956233 69 + 75148670 TAGGCTGACAGCAAGGGGAGCAAC--AGT--TGG--TCATGGTGTCAGGGGTGGAGGG-TGGGTTTCTAATCAGAG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192626 69 +  4244037 TAGGCTGACAGCAAGGGGAGCAAC--AGT--TGG--TCATGGTGTCAGGGATGGAGGG-TGGGCTTCTGTTCAGAG
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218039 69 +  4569836 TAGGCTGACAGCAAGGGGAGCAAC--AGT--TGG--TCATGGTGTCAGGGGTGGAGGA-TGGGCTTCTGTTCATAG
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8285 69 -    12755 TAGGCTGGCAGCAAGGGGAGCAGC--AGT--GGG--TCATGGTGTCAGGTGGGGAGTG-TGGGCTCCTGTTCAGAG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1875539 69 +  3513951 TAGGCTGGCAGCAAGGGGAGCAGC--AGT--GGG--TCATGGTGTCAGGGGTGGATGG-TGGGCTCCTGTTCAGAG
i saiBol1.JH378271                 T 12289 C 0
s cebCap1.NW_016107543v1              23237 69 -  4077172 TAGGCTGGCAGCAAGGGGAGCAGC--AGT--AGG--TCATGGTGTCAGGGGTGGAGGG-TGGGCTTCTGTTCAGAG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              17082 69 -    94492 TAGGCTGGCAGCAAGGGGAGCAGC--AGT--GGG--TCATGGTGTCAGGGGTGGAGGG-TGGGCTCCTGTTCAGAG
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22915187 69 + 28711273 TGGGCTGGCAGCAAGGGGAGCAGC--AGT--GGG--TCATGTTATCCTGTGTGGAGGA-TGGGTTCTTGTTTAGAG
i otoGar3.GL873537                 C 0 C 0
s canFam3.chr9                     21521880 72 + 61074082 TAAGCTGGTACCAAGGAAAGCAACAGAGT--GGC--TCATGGTCTCAGGTATAGGGCATTGAGTTTCTGTGGAGAG
i canFam3.chr9                     C 0 N 0
s dasNov3.JH570468                   593747 66 -   852752 TGGGCTGGCAGCAGGGAGAGCAGC--AGG--AGG--TCATGGCATCAGG-GTGGAGGG---GGCTCGTGTTCAGAG
i dasNov3.JH570468                 C 0 C 0

a score=83865.000000
s hg38.chr17_JH159148v1_alt           57424 7 +    88070 GTGAGTT
s panTro5.chr17                    16368315 7 + 83181570 GTGAGTT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273531 7 + 83442489 GTGAGTT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120385 7 +  4267968 GTGAGTT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110073 7 -  2193130 GTGAGTT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170243 7 - 77216781 GTGAATT
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28080549 7 - 80997621 GTGAATT
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2126946 7 + 10377808 GTAATTT
i macNem1.NW_012014910v1           I 1 C 0
s cerAty1.NW_012006043v1            2013398 7 -  8458610 GTGAGTT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64956302 7 + 75148670 GTGAGTT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2192695 7 +  4244037 GTGAGTT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218108 7 +  4569836 GTGAGTT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8354 7 -    12755 GTGAGTT
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1875608 7 +  3513951 GTGAGTT
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              23306 7 -  4077172 GTGAGTT
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              17151 7 -    94492 GTGAGTT
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22915256 7 + 28711273 GTGAGTT
i otoGar3.GL873537                 C 0 T 19640
s dasNov3.JH570468                   593813 5 -   852752 --GTGTT
i dasNov3.JH570468                 C 0 C 0

a score=1235858.000000
s hg38.chr17_JH159148v1_alt           57431 107 +    88070 TCCCAGAATCTGATGACCCCTTGCAATCTGGACCTTTTATACACCTGGCCTCCA--AAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTT--CCGTTTACATTGTTTTCC
s panTro5.chr17                    16368322 107 + 83181570 TCCCAAAATCTGATGACCCCTTGCAATCTGGACCTTTTATACACCTGGCCTCCA--AATTTTCCACCAATCAGCAGGACTTTTCCTTGTTG--CTGTTTACATTGTTTTCC
i panTro5.chr17                    C 0 I 1
s panPan2.chr17                    16273538 107 + 83442489 TCCCAGAATCTGATGACCCCTTGCAATCTGGACCTTTTATACACCTGGCCTCCA--AAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTT--CTGTTTACATTGTTTTCC
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120392 107 +  4267968 TCCCAGAATCTGATGACCCCTTGCAATCTGGACCTTTTATACACCTGGCCTCCA--AAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTT--CCGTTTACATTGTTTTCC
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110080 107 -  2193130 TCCCAGAATCTGATGACCGCTTGCAATCTGGACCTTTTATACACCTGGCCTCCA--AAGTTTCCACTAATCAGCAGGACTTTTCCTTGTTG--CTGTTTACATTGTTTTCC
i nomLeu3.chrUn_GL397460_1         C 0 I 1
s rheMac8.chr16                    30170250 107 - 77216781 TCCCAGAATCTGATGACCCCTTGCAATCGGGACCTTTTATACACCTGGCCTCCA--AAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTG--CTATTTACATTGTTTTCC
i rheMac8.chr16                    C 0 I 1
s macFas5.chr16                    28080556 107 - 80997621 TCCCAGAATCTGATGACCCCTTGCAATCGGGACCTTTTATACACCTGGCCTCCA--AAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTG--CTATTTACATTGTTTTCC
i macFas5.chr16                    C 0 I 1
s macNem1.NW_012014910v1            2126953 109 + 10377808 TCCCAGATCTTGATGACCCCTTGCATCTGGACCACTTTATACACCTGGCCTCCAACAGGTTTCCACCAATCAGCAGGATATTTCCTTGTTGGCTTATTTAC--TGTTTCCC
i macNem1.NW_012014910v1           C 0 T 10564
s cerAty1.NW_012006043v1            2013405 106 -  8458610 TCCCAGAATGTGATGACCCCTTGCAATCTGGACCTTTTATACACCTGGCCTCCA--AAGTTTCCACCAATCAGCA-GACTTTTCCTTGCTG--CTGTTTACATTGTTTTCC
i cerAty1.NW_012006043v1           C 0 I 1
s chlSab2.chr16                    64956309 107 + 75148670 TCCCAGAATGTGATGACCCCTTGCAATCTGGACCTTTTATACACCTGGCCTCCA--AAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTG--CTGTTTACATTGTTTTCC
i chlSab2.chr16                    C 0 I 1
s manLeu1.NW_012106252v1            2192702 107 +  4244037 TCCCAGAATGTGATGACCCCTTGCAATCTGGACCTTTTATACACCTGGCCTCCA--AAGTTTCCACCAATCAGCAGGACTTTTCCTTGCTG--CTGTTTACATTGTTTTCC
i manLeu1.NW_012106252v1           C 0 I 1
s colAng1.NW_012122154v1            2218115 107 +  4569836 TCCCAGAATCTGATGACCCCTTGCAATCTAGACCTTTTATACACCTGGCCTCCA--AAGTTTCCACCAATCAGCAGGACTTTTCCTTGCTG--CTGTTTACATTGTTTTCC
i colAng1.NW_012122154v1           C 0 I 1
s calJac3.chr5_ACFV01180105_random     8361 107 -    12755 TCCCAAAATCTGAGAACTCCTTCCAATCTGGGCCTTTTATACATGTGGCCTCCA--AAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTG--CTGTTTACATTGTTTTCC
i calJac3.chr5_ACFV01180105_random C 0 I 1
s saiBol1.JH378271                  1875615 107 +  3513951 TCCCAGAATCTGATGACTCCTTCCAATCTGGGCCTTTTATACATCTGGCCTCCA--ACGTTTCCACCAATCAGCAGGACTTCTCATTGTTG--CTGTTTACATTGTTTTCT
i saiBol1.JH378271                 C 0 I 1
s cebCap1.NW_016107543v1              23313 107 -  4077172 TCCCAGAATCTGGTGACCCCTTCCCATCTGGACCTTTTATCCACCTGGCCTCTG--AAGCTTCCACCAATCAGCAGGACTTTTCCTTGTTG--CTGTTTACATTGCTTTCA
i cebCap1.NW_016107543v1           C 0 I 1
s aotNan1.NW_018505111v1              17158 107 -    94492 TCCCAGAATTTGATGACCCCTTCCAATCTGGACCTTTTATACACCTGGCCTCCG--AAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTG--TTGTTTACATTGTTTTCT
i aotNan1.NW_018505111v1           C 0 I 1
s otoGar3.GL873537                 22895623 107 + 28711273 TCCCAGAATCTGCTGATGCCTTCCAATGTGGACCTTTTATACACTGGGCCTCCA--AAGTTTGGACCAATGGGCAGAATTTTTCCTTGTTG--TTGTTGACACTGTTTTCC
i otoGar3.GL873537                 T 19640 I 8
s dasNov3.JH570468                   593818 106 -   852752 TCCCAGAATCTGATGGCTCCTTTAATTCTGCATCTTTTATACAC-TGGCCTCCA--ATATTTGGACTGATAGGCAGGTCTATTTCTTGTTG--TTGTTGACATTGTTTCCT
i dasNov3.JH570468                 C 0 C 0

a score=197781.000000
s hg38.chr17_JH159148v1_alt           57538 26 +    88070 ------CAGTCCGTTTGTGATTCTCAAAGGGT
s panTro5.chr17                    16368430 26 + 83181570 ------CAGTCCATTTGGGATTGTCAAAGGGG
i panTro5.chr17                    I 1 T 5511
s panPan2.chr17                    16273645 26 + 83442489 ------CAGTCCATTTGTGATTCTCAAAGGGT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120499 26 +  4267968 ------CAGTCCATTTGTAATTCTCAAAGGTT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110188 26 -  2193130 ------CAGTCTGTTTGGGATTGTCAAAGGGG
i nomLeu3.chrUn_GL397460_1         I 1 I 1
s rheMac8.chr16                    30170358 26 - 77216781 ------CAATCCTTTTGGGATTGTCAAAGGGG
i rheMac8.chr16                    I 1 C 0
s macFas5.chr16                    28080664 26 - 80997621 ------CAATCCTTTTGGGATTGTCAAAGGGG
i macFas5.chr16                    I 1 C 0
s macNem1.NW_012014910v1            2116498 26 + 10377808 ------CAGTGCGTTTGTGATTCTCAAAGGGT
i macNem1.NW_012014910v1           T 10564 C 0
s cerAty1.NW_012006043v1            2013512 26 -  8458610 ------CAGTGCATTTGTGATTCTCAAAGGGT
i cerAty1.NW_012006043v1           I 1 C 0
s chlSab2.chr16                    64956417 26 + 75148670 ------CAGTCCTTTTGGGATTTTCAAAGGGG
i chlSab2.chr16                    I 1 I 5298
s manLeu1.NW_012106252v1            2192810 26 +  4244037 ------CAGTGCATTTGTGATTCTCAAAGGGT
i manLeu1.NW_012106252v1           I 1 C 0
s colAng1.NW_012122154v1            2218223 26 +  4569836 ------TAGTATGTTTGTGATTCTCAAAGGGT
i colAng1.NW_012122154v1           I 1 C 0
s calJac3.chr5_ACFV01180105_random     8469 26 -    12755 ------CAGTCCGATTGGGATTGTCTAAGGGG
i calJac3.chr5_ACFV01180105_random I 1 I 1
s saiBol1.JH378271                  1875723 26 +  3513951 ------TAGTCAGTTTGGGATTATCAAAGAGG
i saiBol1.JH378271                 I 1 I 1
s cebCap1.NW_016107543v1              23421 26 -  4077172 ------CAGTCTGTTTAGGATTGTCAAAGGGG
i cebCap1.NW_016107543v1           I 1 I 30
s aotNan1.NW_018505111v1              17266 26 -    94492 ------CAGTCAGTTTGGGATTGTCAAAGGGG
i aotNan1.NW_018505111v1           I 1 I 1
s otoGar3.GL873537                 22895738 20 + 28711273 ------CAGCT------GAATTATGAAGGAGG
i otoGar3.GL873537                 I 8 I 1
s dasNov3.JH570468                   593924 27 -   852752 TAGATGCAAAGCAC-----ATTGTCAAGGAGG
i dasNov3.JH570468                 C 0 C 0

a score=88756.000000
s hg38.chr17_JH159148v1_alt           57564 19 +    88070 AGTTGTTTCCTTAAG------------GTTA
s panTro5.chr17                    16362945 19 + 83181570 AGTTGTTTCCTTAAG------------GTTA
i panTro5.chr17                    T 5511 C 0
s panPan2.chr17                    16273671 19 + 83442489 AGTTGTTTCCTTAAG------------GTTA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120525 19 +  4267968 AATTGTTTCCTTAAG------------GTTA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110215 19 -  2193130 AGTTGTTTCTGAAAT------------CTTA
i nomLeu3.chrUn_GL397460_1         I 1 I 2
s rheMac8.chr16                    30170384 20 - 77216781 AAGTTCTTTCTTAAAA-----------GTTA
i rheMac8.chr16                    C 0 I 20
s macFas5.chr16                    28080690 31 - 80997621 AAGTTCTTTCTTAAAAGTTATGAATCTGTTG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2116524 19 + 10377808 AGTTGCTTCCTTAAG------------GTTA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013538 19 -  8458610 AGTTGTTTCCTTAAG------------GTTA
i cerAty1.NW_012006043v1           C 0 C 0
s manLeu1.NW_012106252v1            2192836 19 +  4244037 AGTTGTTTCCTTAAG------------GTTA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218249 19 +  4569836 AGTTGTTTCCTTAAG------------GTTA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8496 19 -    12755 AGTTGTTTTTGAAAT------------CTTA
i calJac3.chr5_ACFV01180105_random I 1 I 10
s saiBol1.JH378271                  1875750 19 +  3513951 AGTCATTTACTAAAT------------GCTA
i saiBol1.JH378271                 I 1 I 10
s aotNan1.NW_018505111v1              17293 19 -    94492 AGTTGCTTCTGAAAT------------CTGA
i aotNan1.NW_018505111v1           I 1 I 10
s otoGar3.GL873537                 22895759 19 + 28711273 AGTTGTTTCCTAAGT------------GTTG
i otoGar3.GL873537                 I 1 C 0
s dasNov3.JH570468                   593951 19 -   852752 AAGTTTTTCCTGATG------------TTTT
i dasNov3.JH570468                 C 0 C 0
e cebCap1.NW_016107543v1              23447 30 -  4077172 I
e chlSab2.chr16                    64956443 5298 + 75148670 I

a score=4664.000000
s hg38.chr17_JH159148v1_alt           57583 1 +    88070 A
s panTro5.chr17                    16362964 1 + 83181570 A
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273690 1 + 83442489 A
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120544 1 +  4267968 A
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110236 1 -  2193130 A
i nomLeu3.chrUn_GL397460_1         I 2 C 0
s macFas5.chr16                    28080721 1 - 80997621 A
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2116543 1 + 10377808 A
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013557 1 -  8458610 A
i cerAty1.NW_012006043v1           C 0 C 0
s manLeu1.NW_012106252v1            2192855 1 +  4244037 A
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218268 1 +  4569836 A
i colAng1.NW_012122154v1           C 0 C 0
s otoGar3.GL873537                 22895778 1 + 28711273 A
i otoGar3.GL873537                 C 0 I 8
s dasNov3.JH570468                   593970 1 -   852752 G
i dasNov3.JH570468                 C 0 C 0
e aotNan1.NW_018505111v1              17312 10 -    94492 I
e cebCap1.NW_016107543v1              23447 30 -  4077172 I
e saiBol1.JH378271                  1875769 10 +  3513951 I
e calJac3.chr5_ACFV01180105_random     8515 10 -    12755 I
e chlSab2.chr16                    64956443 5298 + 75148670 I
e rheMac8.chr16                    30170404 20 - 77216781 I

a score=11942.000000
s hg38.chr17_JH159148v1_alt           57584  9 +    88070 -------ACAGATTAA
s panTro5.chr17                    16362965  9 + 83181570 -------ACAGATTAA
i panTro5.chr17                    C 0 I 5520
s panPan2.chr17                    16273691  9 + 83442489 -------ACAGATTAA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120545  9 +  4267968 -------ACAGATTAA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110237  9 -  2193130 -------ACCTTTTAA
i nomLeu3.chrUn_GL397460_1         C 0 I 6
s macFas5.chr16                    28080722  6 - 80997621 -------A---AGTAA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2116544  9 + 10377808 -------ACAGACTAA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013558  9 -  8458610 -------ACAGATTAA
i cerAty1.NW_012006043v1           C 0 C 0
s manLeu1.NW_012106252v1            2192856  9 +  4244037 -------ACAGATTAA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218269  9 +  4569836 -------ACAGATTAA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8525  8 -    12755 --------GAAAGTAA
i calJac3.chr5_ACFV01180105_random I 10 I 1
s saiBol1.JH378271                  1875779  8 +  3513951 --------GAAAGTAA
i saiBol1.JH378271                 I 10 I 1
s cebCap1.NW_016107543v1              23477  8 -  4077172 --------AAAAGTAA
i cebCap1.NW_016107543v1           I 30 I 1
s aotNan1.NW_018505111v1              17322  8 -    94492 --------AAAAGTAA
i aotNan1.NW_018505111v1           I 10 I 1
s otoGar3.GL873537                 22895787  9 + 28711273 -------CAATAGTAA
i otoGar3.GL873537                 I 8 C 0
s dasNov3.JH570468                   593971 16 -   852752 CTTCTGTTCAATGTAA
i dasNov3.JH570468                 C 0 C 0
e chlSab2.chr16                    64956443 5298 + 75148670 I
e rheMac8.chr16                    30170404 20 - 77216781 I

a score=10035.000000
s hg38.chr17_JH159148v1_alt           57593 1 +    88070 G
s panTro5.chr17                    16368494 1 + 83181570 G
i panTro5.chr17                    I 5520 C 0
s panPan2.chr17                    16273700 1 + 83442489 G
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120554 1 +  4267968 G
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110252 1 -  2193130 G
i nomLeu3.chrUn_GL397460_1         I 6 C 0
s macFas5.chr16                    28080728 1 - 80997621 G
i macFas5.chr16                    C 0 I 1
s macNem1.NW_012014910v1            2116553 1 + 10377808 G
i macNem1.NW_012014910v1           C 0 I 10578
s cerAty1.NW_012006043v1            2013567 1 -  8458610 G
i cerAty1.NW_012006043v1           C 0 C 0
s manLeu1.NW_012106252v1            2192865 1 +  4244037 G
i manLeu1.NW_012106252v1           C 0 I 26417
s colAng1.NW_012122154v1            2218278 1 +  4569836 G
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8534 1 -    12755 G
i calJac3.chr5_ACFV01180105_random I 1 C 0
s saiBol1.JH378271                  1875788 1 +  3513951 A
i saiBol1.JH378271                 I 1 C 0
s cebCap1.NW_016107543v1              23486 1 -  4077172 G
i cebCap1.NW_016107543v1           I 1 C 0
s aotNan1.NW_018505111v1              17331 1 -    94492 G
i aotNan1.NW_018505111v1           I 1 C 0
s otoGar3.GL873537                 22895796 1 + 28711273 G
i otoGar3.GL873537                 C 0 I 1
s dasNov3.JH570468                   593987 1 -   852752 G
i dasNov3.JH570468                 C 0 I 1
e chlSab2.chr16                    64956443 5298 + 75148670 I
e rheMac8.chr16                    30170404 20 - 77216781 I

a score=1798884.000000
s hg38.chr17_JH159148v1_alt           57594 184 +    88070 GTTTAATCTGTTTCTTAATTGTGAATTACTCATAGACACTTTGTTTCAGATAAAAGGAAGGCAATCTCATCATCAGCATCATTCCTGTTCTGACCATCATCTGGTCATGTGA--TAGTTCCTGTTGATCTGGGAGGCTCAGGA-AGTT-------------CTCTCTGGCCAGCCTCAT--G-TTTGGCTGTATGTAGACTGG
s panTro5.chr17                    16368495 182 + 83181570 GTTTAATCTGTTTCTTAATTGTGAGTTACTCATAGAAAGTTTGTTTCAGATAAAAGGAAGCCCGTCTCATCATCAGCATCATTCCTGCTCTGACCATCATCTGGTCATGTGA--TAGTTCCTGGTGATCCGGGAGG--CAGAT-AGTT-------------CTCTCTGTCCAGCCTCAT--G-TTTGGCTGTATGTAGACTGG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273701 184 + 83442489 GTTTAATCTGTTTCTTAATTGTGAATTACTCATAGACACTTTGTTTCAGATAAAAGGAAGGCAGTCTCATCATCAGCATCATTCCTGTTCTGACCATCATCTGGTCATGTGA--TAGTTCCTTTTGATCTGGGAGGCTCAGGA-AGTT-------------CTCTCTGTCCAGCCTCGT--G-GCTGGCTGTATGTAGACTGG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120555 184 +  4267968 GTTTAATCTGTTTCTTAATTGTGAATTACTCATAGACACTTTGTTTCAGATAAAAGGAAGGCAGTCTCATCATCAGCATCATTCCTGTTCTGACCATCATCTGGTCATGTGA--TAGTTCCTGTTGATCTGGGAGGCACAGGA-AGTT-------------CTCTCTGTCCAGCCTCAT--G-GCTGGCTGTATGTAGACTGG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110253 184 -  2193130 GTTCAATCTGTTTCTTAATTGTGAGTTACTCATAGAAAGTTTGTTTCAGATAAAAGGAAGGCAGTCTCGTCATCAGCATCATTCCTGCTCTGACCATCATCTGGTCATGTGA--TAGTTCCTGTTGATCTGGGAGGCTCAGGA-AGTT-------------CTCTCTGCCCAGCCTCAT--G-GTTGGCTGTATGTAGCCTGG
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170424 184 - 77216781 GTTTAATCTGTTTCTTAATTGTGAATTACTCATAGAAACTTTGTTTCAGATGAAAGGAAGCCCCTCTCATCATCAGCATCTTTCCTGCTCTGACCATCATCTGGTCATGTGA--TAGGTCCTGGTAATATGGGAGACTCACGT-ACTT-------------CTTTCTGCCCAGCCTCAC--G-GTTGGCTGAATGTGGTCTGA
i rheMac8.chr16                    I 20 C 0
s macFas5.chr16                    28080730 184 - 80997621 GTTTAATCTGTTTCTTAATTGTGAATTACTCATAGAAACTTCGTTTCAGATGAAAGGAAGCCCATCTCATCATCAGCATCATTCCTGCTCTGACAATCATCTGGTCATGTGA--TAGGTCCTGGTAATATGGGAGACTCACGT-ACTT-------------CTCTCTGCCCAGCCTCAC--G-GTTGGCTGAATGTGGTCTGA
i macFas5.chr16                    I 1 C 0
s macNem1.NW_012014910v1            2127132 184 + 10377808 GTTTAATCTGTTTCTTAATTGTGAATTACTCATAGAAACTTCGTTTCAGATGAAAGGAAGCCCATCTCATCATCAGCATCATTCCTGCTCTGACAATCATCTGGTCATGTGA--TAGGTCCTGGTAATATGGGAGACTCACGT-ACTT-------------CTCTCTGCCCAGCCTCAC--G-GTTGGCTGAATGTGGTCTGA
i macNem1.NW_012014910v1           I 10578 C 0
s cerAty1.NW_012006043v1            2013568 197 -  8458610 GTTTAATCTGTTTCTTAATTGTGAATTACTCATAGAAACTTCGTTTCAGATAAAAGGAAGCCCATCTCATCATCAGCATCTTTCCTGCTCTGACCATCATCTGGTCATATGA--TAGTTCCTGGAGATCCGGGAGGCTCAGGA-AGTTCTCTCTGCCCAGCCTCTCTGCCCAGCCTCAT--A-GTTGGCTGTATGTAGACTGG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64961741 184 + 75148670 GTTTAATCTGTTTCTTAATTGTGAATTACTCATAGAAACTTTGTTTCAGATGAAAGGAAGCCCATCTCATCATCAGCATCATTCCTGCTCTGACAGTCCTCTGGTGATGTGA--TAGTTCCTGGTGATCCCGGAGGCTCAGGA-AGTT-------------CCGTCTTCCCCGCCTCAT--G-GTTGTCTGTATGTGGCCTGG
i chlSab2.chr16                    I 5298 C 0
s manLeu1.NW_012106252v1            2219283 184 +  4244037 GTTTAATCTGTTTCTTAATTGTGAATTACTCATAGAAACTTTGTTTCAGATGAAAGGAAGCCCATCTCATCATCAGCATCTTTCCTGCTCTGACTATCGTCTGGTGATGTGA--TAGTTCCTGGTGATCCGGGAGGCTCAGGA-AGTT-------------CTCTCTGCCCAGTCTCAT--G-GTTGTCTGTATGTGTCATGG
i manLeu1.NW_012106252v1           I 26417 C 0
s colAng1.NW_012122154v1            2218279 184 +  4569836 GTTTAATCTGTTTCTTAATTGTTAATTACTCATAGAAACTTCGTTTCAGATAAAAGGAAGCCCATTTCATCATCAGCATCTTTCCTGCTCTGACCATCATCTGGTCATATGA--TAGTTCCTGGTGATCTGGGAGGCTCAGGA-AGTT-------------CTCTCTGCCCAGCCTCAT--A-GTTGGCTGTATGTAGACTGG
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8535 185 -    12755 GTTTAATCTGTTTCTTAATTGTGAGTTACTCATAGAAATGTTGTTTCAAGTAAAAGGAAGGCAGTCTCATCATCAGCATGCTTCCTGCTCTGACCATCATCTTGTCATGTGA--TAGTTCCTGGTGACCAGGGAGGCTCAGGA-AGTT-------------CTCTCTGCCCAGCCTCAT-CT-TTTGGCTGTATGTAGACTGG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1875789 185 +  3513951 GTTTAATCTGTTTCTTACTTGTGAATTACTCATAGAAATGTTGTTTTAAGTAAAAGGAAGGCAGTTTCATCAACAGCCTGCTTCCTGCTCTGACCATCATCTTGTCATGTGA--TAGTTCCTGGTGACCAGGGAGGCTCAGGA-AGTT-------------CTCTCTGTCCAGCCTCAT-CC-TTTGGTTGTATGTAGACTGC
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              23487 184 -  4077172 GTTTAATCTGTTTCTTAATTGAGAATTAGTCATAGAGACTTTGTTTCAGATAAAAGGAAGGCAGTCTCATCATCAGCACCATTCCTGCTCTGACCTTCATCTGGTCATGTGAGTGAGTTCCTGTGG--TGGGGAGGCTCAGGA-AGTT-------------CTCTCTGCCCAGCCTCAT--G-TTTGACCGTATGCAGACTGG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              17332 183 -    94492 GTTTAATCTGTTTCTTAATTGAGAATTAGTCATAGAGACTTTGTTTCAGATACAAGGAAGGCAGTCTCATCATCAGCATCATTCCTGCTCTGACCTTCATCTGGTCACGTGAGTGAGTTCCTGTGG--CTGGGAGGCTCAGGA-AGTT-------------CTCTCTGCCCAGCCTCAT--G-TTTGACTGTATGCAGA-TGA
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22895798 183 + 28711273 GTTTAATCTGTTTCTTCATTGAGAATAACTCCTAGAAACTGT-TTTCAGATACAAGGAAAGTGATCACATCATTAGCATTTTTTCTGCTCTGGTCACTTTGTGGTCATGTGA--TAATTCCTGCTG-TCTGGGAGGGTCCAGA-AGTT-------------CTCTCTTCCTAGTCTGTT--GCTTTCCCTGTATGTCTATTGG
i otoGar3.GL873537                 I 1 T 26666
s dasNov3.JH570468                   593989 181 -   852752 GTTTAATCGTTCTCTTAATTAAGAG-AGTTCATAGAA--TTGTTTTTAGACATAAGGAAGGCGGTCATATCCTCAGAA-CATTCCTGTTCTG-TCATCATCT-GTCACGTGA--TAGTTGTCGCTGGCTGGGGAGGGTCCTTACAGTC-------------GTCAATCCCCAGCTTGGTTTC-TTTGGCTGTACTTAGATTTG
i dasNov3.JH570468                 I 1 C 0

a score=280249.000000
s hg38.chr17_JH159148v1_alt           57778 31 +    88070 GAAGTGTCTGTGGGGAGAAG------------------------------CATGATGCTGA
s panTro5.chr17                    16368677 31 + 83181570 GAAGTGTCAGTGGGGAGAAG------------------------------CATGATGCTGA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273885 31 + 83442489 GAAGTGTCTGTGGGGAGAAG------------------------------CATGATGCTGA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120739 31 +  4267968 GAAGTGTCTGTGGGGAGAAG------------------------------CATGATGCTGA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110437 31 -  2193130 GAAGTGTCTGTGGGGAGAAG------------------------------CATGATGCTGA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170608 31 - 77216781 GAAGTGCCTGTGGGGAGAAG------------------------------TATGATGTTGA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28080914 31 - 80997621 GAAGTGCCTGTGGGGAGAAG------------------------------TATGATGTTGA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2127316 31 + 10377808 GAAGTGCCTGTGGGGAGAAG------------------------------TATGATGTTGA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013765 31 -  8458610 GAAGTGTCTGTGAGGAGAAT------------------------------CATGATGCTGA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64961925 31 + 75148670 GAAGTGTCTGTGGGGAGAAG------------------------------CATGATGCTGA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219467 31 +  4244037 GAAGTGTCTGTGGGGAGAAG------------------------------CATGATGCTGA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218463 31 +  4569836 GAAGTGTCTGTGAGGAGAAG------------------------------CATGATGCTGA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8720 31 -    12755 AAAGCACCTGTGAGGAGAAG------------------------------CATGATGCTAA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1875974 61 +  3513951 AAAGCATCTGTGAGGAGATACTATTTCGTGAGGGATAATTTTCACAAAGCCATGATGCTGG
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              23671 31 -  4077172 GAGGTGTCTGTGGGCAGGGG------------------------------CATGATGCTGA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              17515 31 -    94492 GAAGTGTCTGTGGGCAGGGG------------------------------TGTGATGCTGG
i aotNan1.NW_018505111v1           C 0 C 0
s dasNov3.JH570468                   594170 31 -   852752 CAAGTGCACCTGGCGGTGTA------------------------------CATGATGCTGG
i dasNov3.JH570468                 C 0 C 0
e otoGar3.GL873537                 22895981 26666 + 28711273 T

a score=861754.000000
s hg38.chr17_JH159148v1_alt           57809 88 +    88070 TATATTTACAGTGACAAAATGAATCCATGCCTGGGCCCAAGACTAGTCACCCACCAAATTCTGACTCAAGACT--AGCAGGCA------TCTCTCT
s panTro5.chr17                    16368708 88 + 83181570 TATATTTACAGTGACAAAATGAATCCATGCCTGGGCCCAAGACTATTCACCCACCAAATTCTGACTCAAGACT--AACAGGCA------TCTCTCT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16273916 88 + 83442489 TATATTTACAGTGAGAAAATGAATCCATGCCTGGGCCAAAGACTAGTCATCCACCAAATTCTGACTCAAGACT--AACAGGCA------TCTCTCT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120770 88 +  4267968 TATATTTACAGTGACAAAATGAATCCATGCCTGGGCCCAAGACTAGTCACCCACCAAATTCTGAGTCAAGACT--AACAGGCA------TCTCTCT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110468 88 -  2193130 TGTATTTACAGTGACAAAATGAATCCATGCCTGGGCCCAAGACTAGTCACCCACCAAATTCTGACTGAAGACT--AACAGGCA------TCTCTCT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170639 90 - 77216781 TAAATTTATGGTGACAAAATGAATCCATTCCTGGGCCCAAGACTATTCACCCACCAAATTCTGATTGAAGACT--AATAGGTAT----CTCTCTCT
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28080945 90 - 80997621 TAAATTTATGGTGACAAAATGAATCCATTCCTGGGCCCAAGACTATTCACCCACCAAATTCTGATTGAAGACT--AATAGGTAT----CTCTCTCT
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2127347 88 + 10377808 TAAATTTATGGTGACAAAATGAATCCATGCCTGGTGCCAAGACTATTCACCCACCAAATTCTGATTGAACACT--AATAGGTA------TCTCTCT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013796 88 -  8458610 TATATTTATGGTGACAAAATGAATCCATGCCTGGGCCCAAGACTATTCACCCACCAAATTCTGATTCAAGACT--AACAGGCA------TCTCTCT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64961956 88 + 75148670 TCTACTTACTGTAACAAAGGGAATCCATGCCTGGGCCCAAGACTACTCACCCAACAAATTCTGACTCAAGACT--AACAGGCA------TCTCTCT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219498 88 +  4244037 TCTACTTACCGTGACAAAAGGAATCCATGCCTGGACCCAAGACTATTCACCCACCAAATTCTAGCTCAAGACT--AACAGGCA------TCTCCCT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218494 88 +  4569836 TATATTTACGGTGATAAAATGAATCCATGCCTGGGTCCAAGACTATTCACCCACCAAATTCTGATTCAAGACT--AACAGGCA------TCTCTCT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8751 86 -    12755 TATACTCACAGTGATGAATTGAATCCATGCTTGGGACCAAGACTGTTCACCCACCAA--TCTGATTCAATACT--AACAGGCA------TCTCTCT
i calJac3.chr5_ACFV01180105_random C 0 I 2
s saiBol1.JH378271                  1876035 88 +  3513951 TATATTCACAGTGATGAATTGAATCCATGCTTGGGACCAAGACTGTTTACCCACCAAAGTCTGATTCAATACT--AACAGGTA------TCTCTCT
i saiBol1.JH378271                 C 0 I 2
s cebCap1.NW_016107543v1              23702 88 -  4077172 TATGTTCACAACGATGAATTGAATCCATGCCTGGCCCCAAGCTTGTTCACCCACAAAAGTCTGATTCAAGAGT--AACAGGCA------TCTCTCT
i cebCap1.NW_016107543v1           C 0 I 2
s aotNan1.NW_018505111v1              17546 88 -    94492 TATGTTCACAATGATGAATTGAATCCATGCCTGGCCCCAAGCCTATTCACCCACAAAAGTCTGATTCAAGAGT--AACAGGCA------TCTCTCT
i aotNan1.NW_018505111v1           C 0 T 6184
s otoGar3.GL873537                 22869315 88 + 28711273 TATGTGCAGATTGTTGAATTGAATCCATGCTTTGGTCCAAGTTTGTTCACCTGCAAAAGCCAGAGCCAACACT--AACAGGCA------TCTCTTC
i otoGar3.GL873537                 T 26666 I 2
s dasNov3.JH570468                   594201 96 -   852752 TATGTTCCCAGTGAAAAATTGGATCCCTGCCTGCATTCAAGAATATTCATCCACAAAAGCCTGATTCAAGGCTGCAACAAGAATTTACCTTTCTCT
i dasNov3.JH570468                 C 0 C 0

a score=10000.000000
s hg38.chr17_JH159148v1_alt           57897 1 +    88070 G
s panTro5.chr17                    16368796 1 + 83181570 G
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16274004 1 + 83442489 G
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120858 1 +  4267968 G
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110556 1 -  2193130 G
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170729 1 - 77216781 G
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28081035 1 - 80997621 G
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2127435 1 + 10377808 G
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013884 1 -  8458610 G
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64962044 1 + 75148670 G
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219586 1 +  4244037 G
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218582 1 +  4569836 G
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8839 1 -    12755 G
i calJac3.chr5_ACFV01180105_random I 2 C 0
s saiBol1.JH378271                  1876125 1 +  3513951 G
i saiBol1.JH378271                 I 2 C 0
s cebCap1.NW_016107543v1              23792 1 -  4077172 C
i cebCap1.NW_016107543v1           I 2 C 0
s otoGar3.GL873537                 22869405 1 + 28711273 G
i otoGar3.GL873537                 I 2 C 0
s dasNov3.JH570468                   594297 1 -   852752 G
i dasNov3.JH570468                 C 0 C 0
e aotNan1.NW_018505111v1              17634 6184 -    94492 T

a score=629410.000000
s hg38.chr17_JH159148v1_alt           57898 74 +    88070 -TGCAACCCACACCACC--TGTCTTTCAGTTCTTTGAACATCACTTGGGAAGAGGGTGTTTGTCACAGTGTGTTCCA
s panTro5.chr17                    16368797 76 + 83181570 -TGCCACCCACATCATCTGTGTCTTTCAGTTCTTTGAATGTCACTTGGGAAGACGGTGACTGGCACAGTGTGTTCCA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16274005 74 + 83442489 -TGCAACCCTCACCACC--TGTCTTTCAGTTCTTTGAACGTCACTTGGGAAGAGGGTGTTTGTCACAGTGTGTTCCA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120859 76 +  4267968 -TGCAATCCTCACCACCTGTGTCTTTCAGTTATTTGAACGTCACTTGGGAAGCGGGTGTTTGTCACAGTGTGTTCCA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110557 76 -  2193130 -TGCCACCCACATCATCTGTGTCTTTCAGTTCTTTGAACGTCACTTGGGAAGACGGTGTCTGGCACAGTGTGTTCCA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170730 76 - 77216781 -TGCAACCCTGACCACCTGTGTCTTTCAGTTCTTTGAATGTCACTTGGGAAGAGAGTATCTGGCAGAGTGTGTTCCA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28081036 76 - 80997621 -TGCAACCCTGACCACCTGTGTCTTTCAGTTCTTTGAATGTCACTTGGGAAGAGAGTATCTGGCAGAGTGTGTTCCA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2127436 76 + 10377808 -TGCAACCCTGACCACCTGTGTCTTTCAGTTCTTTGAATGTCACTTGGGAAGAGAGTATCTGGCAGAGTGTGTTCCA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013885 76 -  8458610 -TGCAACCCACACCATCTGTGTCTTTCAGTTCTTTGAAGGTCACTTGGCAAGAGGGTGTCTGGCCGTGTGTGTTCCA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64962045 76 + 75148670 -TGCCACCCACACCACCTGTGTCTTTCAGTTCTTTGAACATCACTTGGGAAGAGGGTGTCTGGCAGAGTGTGTTCCA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219587 76 +  4244037 -TGCGCCCCTCACCATCTGTGTCTTTCAGTTCTTTGAACATCACTTGGGAAGAGGGTGTCTGGCAGAGTGTGTTCCA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218583 75 +  4569836 -TGCAACCCACACCACCTGTGTCTTTCAGTTATTTGCATGTCACTTGG-AAGAGGGTGTCTGGCAGAGTGTGTTCCA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8840 75 -    12755 -TACAGCTTACTTTACCTGTTTCTTCCAGTTCTATGAAGC-CTCTTGGAAAGAGGGCGTTCAGCACAATGTGCTCCA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1876126 75 +  3513951 -TACAGCTTACTTTACCTGTTTCTTCCAGTTCTATGAAGC-CTCTTGGAAAGAGGGGGTTCAGCACAACGTGCTCTA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              23793 74 -  4077172 -TCCACCCTACTCCACCTG--TCTTCCAGTTCTATCAAACTCACTTGGGAAAAGGGTGTTTGGCACAATGTATTCCA
i cebCap1.NW_016107543v1           C 0 T 18120
s aotNan1.NW_018505111v1              11450 76 -    94492 -TGCAACCTATACCACCTGTGTCTTTCGGTTCTGTGAACGTCACTTGGGAAGAGGGTGCCTGGCACAGTGTGTTCCA
i aotNan1.NW_018505111v1           T 6184 I 4
s otoGar3.GL873537                 22869406 76 + 28711273 -TACAACCTACTGCAGGGGTGTTTCCCAGTTCTATCCATGACACCTGGGAAGAGGATGTTTTTTACAATCTATTCCA
i otoGar3.GL873537                 C 0 C 0
s dasNov3.JH570468                   594298 75 -   852752 TGGCAACTTACTCCATCAGTGAATGCCA-TTCTATGAAAGATATTTGGGTAGAAAATACTTGGCATA-CACCTTTCA
i dasNov3.JH570468                 C 0 C 0

a score=999207.000000
s hg38.chr17_JH159148v1_alt           57972 128 +    88070 TGTGGCAGAGCAGATCGAGAGCAGGTGG-----ATGCA--------GATAAATCCACTGGGATTTAGACAGCATCAAGTAATCTATGCCCT-GAGTGACCATTCATTCTGACTTGTCTGTGAGCGTGGCGA-TTCCAGAATGA
s panTro5.chr17                    16368873 130 + 83181570 TGTGGCAGAGCAGATCGAGAACAGGTGG-----ATGCA--------GAGAAATCCGCTGAGATTTAGACAGCATCAAGCAATGTATGCCCTAGGACGACCATTCATTCTGACTTGTCTGGGAGTGTGGGGATTTCCAGGATGA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16274079 128 + 83442489 TGTGGCAGAGCAGATCGAGAGCAGGTGG-----GTGCA--------GATTAATCCACTGGGATTTAGACAGCATCAAGTAATCTATGCCCT-GAGTGACCATTCATTCTGACTTGTCTGTGAGCGTGGCGA-TTCCAGGATGA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4120935 128 +  4267968 TGTGGCAGAGCAGATCGAGAGCAGGTGG-----ATGCA--------GAGAAATCCACTGAGATTTAGACAGCATCAAGTAATCTATGCCCT-GAGTGACCATTCATTCTGACTTGTCTGTGAGCGTGGCGA-TTCCAGGATGA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110633 130 -  2193130 TGCGGCAGAGCAGATAGAGAACAGGTGG-----ATGCA--------GAGAAATCCACTGGGATTTAGACAGCATCAAGCAATCTATGCCCTAGGGCGACCATTCATTCTGACTTGTCTGGGAGTGTGGGGATTTCCAGGATGA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170806 130 - 77216781 TGTGGCAGAGCAGATTGAGAGCAAGTGG-----ATGCA--------GAGAATTCCACTGGGATTTAGAGAGCATAAAGCAATGTATGCCCTGGGGCGACCAGTCATTCTGACTTACCTGTGAGTGTGGTGATTACCAGGATGA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28081112 130 - 80997621 TGTGGCAGAGCAGATTGAGAGCAAGTGG-----ATGCA--------GAGAATTCCACTGGGATTTAGAGAGCATAAAGCAATGTATGCCCTGGGGCGACCAGTCATTCTGACTTACCTGTGAGTGTGGTGATTACCAGGATGA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2127512 130 + 10377808 TGTGGCAGAGCAGATTGAGAGCAAGTGG-----ATGCA--------GAGAATTCCACTGGGATTTAGAGAGCATAAAGCAATGTATGCCCTGGGGCGACCAGTCATTCTGACTTACCTGTGAGTGTGGGGATTACCAGGATGA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2013961 129 -  8458610 TGTGGCAGAGCAGATTGAGAGCAGGTGG-----ATGCA--------GAGAAATTCACTGGGATTTAGACAGCATCAAGCAATCTATGCCCT-GAGTGACCAGTCATTCTGACTTGTCTGCGAGTGTGGCGATTACCAGAACAA
i cerAty1.NW_012006043v1           C 0 I 1403
s chlSab2.chr16                    64962121 130 + 75148670 TGTGGCGGAGCAGATTGAGAGCAGGTGG-----ATGCA--------GAGAAATCTACTGGGATTTTGACAGCATTGAGCAATCTATGCCTGAGCGTGACTATTCATTCTGACTTGCCTGTGAGTGTGGTGATTACCGGGATGA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219663 130 +  4244037 TGTGGCAGAGCAGATCGAGAGCAAGTGG-----ATGCA--------GGGAAATCCACTGGGATTTTGACAGCGTCGAGCAATCTAAGCCTGTGCGTGACTATTCATTCTGACTTGTCTGTGAGTGTGGCGATTACCGGGATGA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218658 129 +  4569836 TGTGGCAGAGCAGATGGAGAGCAGGTGG-----ATGCA--------GAGAAATCCACTGGGATTTAGACAGCATCACGCAATCTATGCCCT-GAGTGACCAGTCATTCTGACTTGTCTGCAAGTGTGGCGATTACCAGGACGA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     8915 135 -    12755 GGTGGCAGAGTGGAACCCAAGCTGACAGGTAGAAAGAG--------GAGGAGTTCACTGGAATTCACGAAGCCTCAAGCAATCCACATGCTGgggtgagcattcatcctgatttgtctgggactgaggggcttaccagcatgt
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1876201 135 +  3513951 GGAGGCAGTGTGGAACCAAAGCAGACAGGTAGAAAGAG--------GAGGAGTTCACTGGAATTCACAAAGCCTCAAGCAATCTACATGCtggggtgagcattcatcctgatttgcctgggtctgaggggcttaccagCAAGA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1               5747 132 -  4077172 TGTGGCAGAGCAGAATTGAAGTAGGTGG---GAACAAG--------GAGAAGTCCACTGGGATTTAGATAGCATCAAGCACTCTTTGTCCTGgggtgaccattcattctgatttgtctgggagtgaggggcttaccaggaata
i cebCap1.NW_016107543v1           T 18120 C 0
s aotNan1.NW_018505111v1              11530 132 -    94492 TGTGGCAGAGCCGATCGAGCATAGGTGG---ATGCAAA--------GAGAAATCCACTGGGATTTTGGCAGCATCAAGCAATCTATGCCCCGGGGTGACCATTCATTCTGATTTGTCTGCGAGTGTGGCGATTACCAGAATGA
i aotNan1.NW_018505111v1           I 4 C 0
s otoGar3.GL873537                 22869482 113 + 28711273 TGTGGTAAAGCAGAAAGAAAGCATATGG-----ACAGA--------AGGATA---AGTAGCATACTGGGAGTAACAAGGGTTCAGTGTGa--gggtgac--atcatcttgattagcctg----------gcttacaaagatga
i otoGar3.GL873537                 C 0 C 0
s dasNov3.JH570468                   594373 131 -   852752 TATGGCAAAGCAGAAGCAAAGCAGGTGG-----ATAGAAGAAGAAGAATAATTATACCAGAATTCAGAAAGTATCGATCAATTTACAACCTGATgtgacaaatcatcccagtttgccca-aagctgggggtttccct------
i dasNov3.JH570468                 C 0 C 0

a score=414491.000000
s hg38.chr17_JH159148v1_alt           58100 53 +    88070 GAATGTA------GGACTCTCTATGGCATAAATGCTTGAGATTCAGGCCAACCAG-CATG
s panTro5.chr17                    16369003 53 + 83181570 GAATGGA------GGACTTTCTATCACGTAACTGCTTGAGATTCAGGCCAACCAG-CATG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16274207 53 + 83442489 GAATGTA------GGACTCTCTATGGCATAACTGCTTGAGATTCAGGCCAACCAG-CATG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4121063 53 +  4267968 GAATGTA------GGACTCTCTATGACATAACTGCTTGAGATTCAGACCAACCAG-CACG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110763 53 -  2193130 GAATGGA------GGACTTTCTATCACATAACTGCTTGAGATTCAGGCCAACCAG-CATG
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170936 53 - 77216781 GAATGTA------GGACTTTCTATCACATAACTGGTTGAGATTCAGACCAACCAG-CATG
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28081242 53 - 80997621 GAATGTA------GGACTTTCTATCACATAACTGGTTGAGATTCAGACCAACCAG-CATG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2127642 53 + 10377808 GAATGTA------GGACTTTCTATCACATAACTGGTTGAGATTCAGACCAACCAG-CATG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2015493 53 -  8458610 gaaTGTA------GGACTTTCTATGACATAACTGATTGAGATTCAGGCCAACCAG-CATG
i cerAty1.NW_012006043v1           I 1403 C 0
s chlSab2.chr16                    64962251 53 + 75148670 TAATGGA------GGACTTTGTATCACATAACTGGTTGAAATTCAGGCCAACGAG-TATG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219793 53 +  4244037 TAATGGA------GGACTTTCTATCACATAACTGCTTGAGATTCAGGGCAACGAG-TATG
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218787 53 +  4569836 GAATGTA------GGACTTTCTATGACATAACTGACTGAGATTCAGGCCAACCAG-CATA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     9050 59 -    12755 gAATGTGAGAGTGGGAATTACTGTGACATAACTGCTCTAGGTCTAGGAAAAGCAG-TCTG
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1876336 31 +  3513951 AAATGTAAGAGTGGGAGTTACTGTGACATAA-----------------------------
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1               5879 53 -  4077172 gaatgta------ggactttcTCTGACATAACTGCTTTAGATTCAGACCAACCAG-CATG
i cebCap1.NW_016107543v1           C 0 I 11954
s aotNan1.NW_018505111v1              11662 53 -    94492 GAATGTA------GCACCTTCTATGACATAACTGCTTTAGATTCAGGTCAACCAG-CATG
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22869595 53 + 28711273 gaaagtg------ggagcttctgtgatatgactgccatagatccaggcaaaccag-gatg
i otoGar3.GL873537                 C 0 I 7
s dasNov3.JH570468                   594504 52 -   852752 ggatgtg------ggattttcagtgttaaaactaggacagtctctgtcaaattggaca--
i dasNov3.JH570468                 C 0 C 0

a score=127229.000000
s hg38.chr17_JH159148v1_alt           58153 23 +    88070 TGCTGTG-GCTCTAGTCGC-AACCC
s panTro5.chr17                    16369056 24 + 83181570 TGCTCTG-GCTCTAGCCCTAAACCT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16274260 23 + 83442489 TGCTTTG-GCTCTAGCCGC-AACCC
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4121116 23 +  4267968 TGCTCTG-GCTCTAGCCGC-AACGC
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110816 24 -  2193130 TGCTGTG-GCTCTAGCCCTAAACCT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30170989 24 - 77216781 TGCTGTG-GCTCTAGCCTTAAACCT
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28081295 24 - 80997621 TGCTGTG-GCTCTAGCCTTAAACCT
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2127695 24 + 10377808 TGCTGTG-GCTCTAGCCTTAAACCT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2015546 23 -  8458610 CACTCTG-GCTCTAG-CTGCAACCC
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64962304 24 + 75148670 AGCTGTG-CTTCTAGCCTTAAACCT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219846 24 +  4244037 AGCTGTG-CTTCTAGCCTTAAAACT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218840 23 +  4569836 CGCTCTG-GCTCTAG-CCACAACCC
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     9109 23 -    12755 AGCTGTG-GCTCTAGTCCT-AACCC
i calJac3.chr5_ACFV01180105_random C 0 I 1
s saiBol1.JH378271                  1876367 21 +  3513951 --CTTTG-GCTCTAGCCCT-AACCC
i saiBol1.JH378271                 C 0 I 1
s cebCap1.NW_016107543v1              17886 23 -  4077172 AGCTGTG-GTTCTAGCCCT-AACCC
i cebCap1.NW_016107543v1           I 11954 I 1
s aotNan1.NW_018505111v1              11715 23 -    94492 AGCCGTG-GTTCTAGCCCT-AACCC
i aotNan1.NW_018505111v1           C 0 I 51
s otoGar3.GL873537                 22869655 17 + 28711273 gacTTGT-GTTCTATCCC-------
i otoGar3.GL873537                 I 7 I 18
s dasNov3.JH570468                   594556 24 -   852752 agttgaacactccaGTCTT-AACCC
i dasNov3.JH570468                 C 0 I 1

a score=92859.000000
s hg38.chr17_JH159148v1_alt           58176 11 +    88070 GGTTACT---AGCA
s panTro5.chr17                    16369080 11 + 83181570 AGTTACT---AGCA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16274283 11 + 83442489 GGTTACT---AGCA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4121139 11 +  4267968 AGTTACT---AGCA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110840 11 -  2193130 AGTTACT---AGCA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30171013 11 - 77216781 AGTTACT---AGCA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28081319 11 - 80997621 AGTTACT---AGCA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2127719 11 + 10377808 AGTTACT---AGCA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2015569 11 -  8458610 GGTTACT---AGCA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64962328 11 + 75148670 AGTGACT---AGCA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219870 11 +  4244037 AGTGACT---AGCA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218863 11 +  4569836 GGTTACT---AGCA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     9133 11 -    12755 GGTTATT---GACA
i calJac3.chr5_ACFV01180105_random I 1 C 0
s saiBol1.JH378271                  1876389 11 +  3513951 GGCTACT---GGGA
i saiBol1.JH378271                 I 1 C 0
s cebCap1.NW_016107543v1              17910 11 -  4077172 GGTTACT---GGCA
i cebCap1.NW_016107543v1           I 1 C 0
s otoGar3.GL873537                 22869690 14 + 28711273 AGTTACTTAGGTCA
i otoGar3.GL873537                 I 18 C 0
s dasNov3.JH570468                   594581 11 -   852752 GTTTACT---TGCA
i dasNov3.JH570468                 I 1 I 31613
e aotNan1.NW_018505111v1              11738 51 -    94492 I

a score=25714.000000
s hg38.chr17_JH159148v1_alt           58187  7 +    88070 C--------AGTAAG------
s panTro5.chr17                    16369091 15 + 83181570 GTAACTAGAAGTAAG------
i panTro5.chr17                    C 0 I 96
s panPan2.chr17                    16274294  7 + 83442489 C--------AGTAAG------
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4121150  7 +  4267968 C--------AGTAAG------
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110851  7 -  2193130 C--------AGTAAG------
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30171024  7 - 77216781 C--------AGTAAG------
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28081330  7 - 80997621 C--------AGTAAG------
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2127730  7 + 10377808 C--------AGTAAG------
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2015580  7 -  8458610 C--------AGTAAG------
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64962339  7 + 75148670 A--------AGTAAG------
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219881  7 +  4244037 A--------AGTAAG------
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218874  7 +  4569836 C--------AATAAG------
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     9144  7 -    12755 T--------AGTTAT------
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1876400  7 +  3513951 C--------GGTCAT------
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17921  7 -  4077172 T--------AGGAAG------
i cebCap1.NW_016107543v1           C 0 C 0
s otoGar3.GL873537                 22869704  7 + 28711273 C--------GGACGG------
i otoGar3.GL873537                 C 0 C 0
s dasNov3.JH570468                   626205 13 -   852752 C--------AGTAACCTCAAG
i dasNov3.JH570468                 I 31613 C 0
e aotNan1.NW_018505111v1              11738 51 -    94492 I

a score=1918.000000
s hg38.chr17_JH159148v1_alt           58194 22 +    88070 CAGCA-----------------------------TGtcttctctctctctc------
s panPan2.chr17                    16274301 20 + 83442489 CAGCA-----------------------------TGTCT--TCTCTCTCTC------
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4121157 22 +  4267968 CAGCA-----------------------------TGTCTTCTCTCTCTCCC------
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110858 10 -  2193130 ----------------------------------TGTCATTTCT-------------
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30171031 18 - 77216781 CGTCA-----------------------------TTTCTTCTCTCCA----------
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28081337 18 - 80997621 CGTCA-----------------------------TTTCTTCTCTCCA----------
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2127737 18 + 10377808 CGTCA-----------------------------TTTCTTCTCTCCA----------
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2015587 18 -  8458610 CGTTA-----------------------------TGTCTTCTCTCTT----------
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64962346 18 + 75148670 CATCT-----------------------------TTTCTTCTCTCTA----------
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219888 18 +  4244037 CATCA-----------------------------TTTCTTCTCTCTA----------
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218881 18 +  4569836 CGTTA-----------------------------TGTCTTCTCTCTC----------
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     9151 47 -    12755 TGGCACctctctcttgatctctctctctctctcgctctctctctctc----------
i calJac3.chr5_ACFV01180105_random C 0 I 4
s saiBol1.JH378271                  1876407  5 +  3513951 TGGCA----------------------------------------------------
i saiBol1.JH378271                 C 0 I 4
s cebCap1.NW_016107543v1              17928 18 -  4077172 TGTTA-----------------------------TTTCTTCTCTCTC----------
i cebCap1.NW_016107543v1           C 0 I 4
s otoGar3.GL873537                 22869711 22 + 28711273 -------------------------AGCCTTTTTTTCCTTCTCTGTC----------
i otoGar3.GL873537                 C 0 C 0
s dasNov3.JH570468                   626218 24 -   852752 GGACA-----------------------------TACCTTCACCCAA----ACCTGC
i dasNov3.JH570468                 C 0 C 0
e aotNan1.NW_018505111v1              11738 51 -    94492 I
e panTro5.chr17                    16369106 96 + 83181570 I

a score=-2242.000000
s hg38.chr17_JH159148v1_alt           58216 1 +    88070 -t
s panTro5.chr17                    16369202 1 + 83181570 -T
i panTro5.chr17                    I 96 C 0
s panPan2.chr17                    16274321 1 + 83442489 -T
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4121179 1 +  4267968 -T
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110868 1 -  2193130 -T
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s chlSab2.chr16                    64962364 1 + 75148670 -C
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219906 1 +  4244037 -C
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     9202 1 -    12755 -t
i calJac3.chr5_ACFV01180105_random I 4 C 0
s saiBol1.JH378271                  1876416 1 +  3513951 -T
i saiBol1.JH378271                 I 4 C 0
s cebCap1.NW_016107543v1              17950 1 -  4077172 -T
i cebCap1.NW_016107543v1           I 4 C 0
s otoGar3.GL873537                 22869733 1 + 28711273 -T
i otoGar3.GL873537                 C 0 C 0
s dasNov3.JH570468                   626242 1 -   852752 A-
i dasNov3.JH570468                 C 0 C 0
e aotNan1.NW_018505111v1              11738 51 -    94492 I
e colAng1.NW_012122154v1            2218899 0 +  4569836 C
e cerAty1.NW_012006043v1            2015605 0 -  8458610 C
e macNem1.NW_012014910v1            2127755 0 + 10377808 C
e macFas5.chr16                    28081355 0 - 80997621 C
e rheMac8.chr16                    30171049 0 - 77216781 C

a score=3994.000000
s hg38.chr17_JH159148v1_alt           58217 2 +    88070 ct
s panTro5.chr17                    16369203 2 + 83181570 CT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16274322 2 + 83442489 CT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4121180 2 +  4267968 CT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110869 2 -  2193130 CT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s chlSab2.chr16                    64962365 2 + 75148670 AT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219907 2 +  4244037 AT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218899 1 +  4569836 -G
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     9203 2 -    12755 ct
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1876417 2 +  3513951 CT
i saiBol1.JH378271                 C 0 C 0
s otoGar3.GL873537                 22869734 2 + 28711273 TT
i otoGar3.GL873537                 C 0 C 0
s dasNov3.JH570468                   626243 2 -   852752 CT
i dasNov3.JH570468                 C 0 C 0
e aotNan1.NW_018505111v1              11738 51 -    94492 I
e cebCap1.NW_016107543v1              17951 0 -  4077172 C
e cerAty1.NW_012006043v1            2015605 0 -  8458610 C
e macNem1.NW_012014910v1            2127755 0 + 10377808 C
e macFas5.chr16                    28081355 0 - 80997621 C
e rheMac8.chr16                    30171049 0 - 77216781 C

a score=59433.000000
s hg38.chr17_JH159148v1_alt           58219 11 +    88070 atttctTTTTA
s panTro5.chr17                    16369205 11 + 83181570 ATTTCTTTTCA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16274324 11 + 83442489 ATTTCTTTTTA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4121182 11 +  4267968 GTTTCTTTTTA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110871 11 -  2193130 ATTTCTTTTCA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30171049  8 - 77216781 ---TTTTTTAA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28081355  8 - 80997621 ---TTTTTTAA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2127755  8 + 10377808 ---TTTTTTAA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2015605  8 -  8458610 ---TCTTTTTG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64962367 11 + 75148670 ATTTCTTTTTA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219909 11 +  4244037 ATTTCTTTTTA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218900 11 +  4569836 CTTTCTTTTTA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     9205 11 -    12755 ctctGTTTTCA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1876419 11 +  3513951 CTCTGTTTTCA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17951 11 -  4077172 ATTTCCTTTGA
i cebCap1.NW_016107543v1           C 0 C 0
s otoGar3.GL873537                 22869736 11 + 28711273 CTTACTTTTTA
i otoGar3.GL873537                 C 0 C 0
s dasNov3.JH570468                   626245 10 -   852752 GTTTTTTCTT-
i dasNov3.JH570468                 C 0 C 0
e aotNan1.NW_018505111v1              11738 51 -    94492 I

a score=15764.000000
s hg38.chr17_JH159148v1_alt           58230 2 +    88070 AT
s panTro5.chr17                    16369216 2 + 83181570 AT
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16274335 2 + 83442489 AT
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4121193 2 +  4267968 AT
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110882 2 -  2193130 AT
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30171057 2 - 77216781 AA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28081363 2 - 80997621 AA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2127763 2 + 10377808 AA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2015613 2 -  8458610 AT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64962378 2 + 75148670 AT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2219920 2 +  4244037 AT
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218911 2 +  4569836 AT
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     9216 2 -    12755 AT
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1876430 2 +  3513951 AT
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17962 2 -  4077172 AT
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11789 2 -    94492 AT
i aotNan1.NW_018505111v1           I 51 C 0
s otoGar3.GL873537                 22869747 2 + 28711273 AT
i otoGar3.GL873537                 C 0 T 8014
e dasNov3.JH570468                   626255 0 -   852752 C

a score=1423972.000000
s hg38.chr17_JH159148v1_alt           58232 158 +    88070 GAAGGAATTAGATGAGTTGAGATGATGCCTGATTCATCATGGAGTTCTAACATGTTTAAAACATTTTCTA---GGTATACCATTCATTTGAGAAGAA-TGCAAATT-ATTAATTTTCAACTTGATATAGTATTATATTGTAAATACATCTGTGTCCCCATTA-C
s panTro5.chr17                    16369218 157 + 83181570 GAAGGGATTAGATGAGTTGAGATGATACCTGATTCATCGTGGAGTTCTAACATGTTTAAAACATTTTCTA---GGTATATCATTCACTTGAGAAGAA-TGCAAATT-ATTAATTTCCAACCTGATATAGTATTACATTGTAAATACATCTATGTCCCCATTA--
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16274337 158 + 83442489 GAAGGAATTAGATGAGTTGAGATGATGCCTGATTCATCATGGAGGTCTAACATGTTTAAAACATTTTCTA---GGTATACCATTCATTTGAGAAGAA-TGCAAATT-ATTAATTTTCAACTTGATATAGTATTATATTGTAAATACATCTATGTCCCCATTA-C
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4121195 156 +  4267968 GAAGGAATTAGATGAGTTGAGATGATGCCTGATTCATCATGGAGTTCTAACATGTTTAAAACATTTTCTA---GGTATACCATTCATTTGAGAA-AA-TGCAAACT-ATTAATTTTCAACTTGATATAGTATTATATTGTAAATACATCTATGT-CCCATTA-C
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2110884 157 -  2193130 GAAGGGATTAGATGAGTTGAGATGATACCTGATTCATCGTGGAGTTCTAACACGTTTAAAACATTTTCTA---GGTATCTCATTCATTTGAGAAGAA-TGCAAATT-ATTAATTTCCAACCTGATATAGTATTACATTGTAAATACATCTATGTCCCCATTA--
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30171059 157 - 77216781 TGAAGAATTAGATGAGTTGAGATGATACCTGATTCATCATGGAGTTCTAATATGTTTAAACGATTTTCTA---GGTATACCATTCATTTGAGAAAAA-TGCAAATT-ATTAATTTCCAACTTGATATAATATTATATTGTAAATACATCTATGTCCCCATTA--
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28081365 157 - 80997621 TGAAGAATTAGATGAGTTGAGATGATACCTGATTCATCATGGAGTTCTAATATGTTTAAACCATTTTCTA---GGTATACCATTCATTTGAGAAAAA-TGCAAATT-ATTAATTTCCAACTTGATATAATATTATATTGTAAATACATCTATGTCCCCATTA--
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2127765 157 + 10377808 TGAAGAATTAGATTAGTTGAGATGATACCTGATTCATCATGGAGTTCTAATATGTTTAAACCATTTTCTA---GGTATACCATTCATTTGAGAAAAA-TGCAAATT-ATTAATTTCCAACTTGATATAATATTATATTGTAAATACATCTATGTCCCCATTA--
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2015615 157 -  8458610 GAAGGAATTAGATGAGTTGATATGACGCCTGGTTCATCGTGGAATTCTAACATGTTTAGAACATTTTCTA---GGTATACCATTCATTTGAGAAGAA-TGTAAAGT-ATTAATTTCCAGCTTGATATCGTATTATTTTGTAAATACATCTATGGCTCCATTA--
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64962380 158 + 75148670 GAAGCAATTAGATGAGCTGAGATGATACCTGATTCATCGTGGAGTTCTAACATGTTTAAAACATTTTCTA---GGTATACCATTCATTTGAGAAGAA-TGCAAGGT-ATTAATTTCCAACTTGATATAGTATTATATTGTAAATATATTTAAGGCCCCATTAC-
i chlSab2.chr16                    C 0 I 4
s manLeu1.NW_012106252v1            2219922 157 +  4244037 GAAGGAATTAGATGAGCTGAGATGATACCTGATTCATCGGGGAGTTCTAACATGTTTAAAACATTTTCTA---GGTATACCATTCATTTGAGAAGAA-TGCAAAGT-ATTAATTTCCAAATTGATATAGTATTATATTGTAAATATATTTATGGCCCCATTA--
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2218913 157 +  4569836 GAAGGAATTAGATGAGTTGATATGACCCCTGGTTCATCGTGGAATTCTAACATGTTTAAAACATTTTCTA---GGTATACCATTCATTTGAGAAGAA-TGTAAAGT-ATTAATTTCCAGCTTGATATAGTATTATCTTGTAAATACCTCTATGGCTCCATTA--
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     9218 156 -    12755 GAGGAAATTAGATGAGTTCAGGTGATAGCTGATTTCTCTTTGAGGTCTTCCATGTTTAAAAC-TTTTTAA---GTTATACCATTTGTTTCAGAAGAA-TGCAAATT-ATTAATTAGTATCTTGATATAATATTATATTGTAAATACAGCTAGGTCTCCATTA--
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1876432 153 +  3513951 GAGGAGATTAGATGAGTTCAGATGATACCTGATTTCTCTTTGAGGTCTTCCATGTTTAAAAC-TTTTTAA---GTTATACCATTTGTTTCAGAAGAA-TGCAAATT-ATTAATTCATATCTTCAT---ATATTATATTGTAAATACATCTAGGTCTCCATTA--
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              17964 157 -  4077172 GAAGGAATTAGATGAGTTGAGATGATACCTGATTCATCTTGGAGTTCTGACATGTTTAAAACATTTTTTA---GGTATACCATTCATTTCCGAAGAA-TGCAAATT-ATTAATTTCTAACTTGATATAACATTATGTTGTAAACACACCTATGTCCCCATTA--
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11791 157 -    94492 GAAGCAATTAGATGAGTTGAGATGATACCTGATTCATCTTGGAGTTCTGACATGTTTAAAACATTTTTTA---GGTATACCATTCATTTCAGAAGAA-TGCAAATT-ATTAATTTCTAACTTGATCTAACATAATGGTGTAAACACACCTATGTCCCCATTA--
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22861735 157 + 28711273 GAGGGAATTAGATTAGTTGCAGTGATACCTGATTTGCCTTTGTGATCTAACATATT---AACATTTTGGGGGTGGTATACCACTTTTTAAAAAAGAAGCGCAAATTAACTAATTTCCAGCTATAGAGAATATCACAAAGTGAATACATCCCTGTCACTAT----
i otoGar3.GL873537                 T 8014 C 0
s dasNov3.JH570468                   626255  97 -   852752 -AAGGAATTAGATTAG---ATCTTATACCTGATGTTTCTTTGAAGTCTAACATATTTTAAAC-------T---AATattc------------------tcccaaag-at--------------------------------aacatacccatgtcactgtta--
i dasNov3.JH570468                 C 0 C 0

a score=31556.000000
s hg38.chr17_JH159148v1_alt           58390 7 +    88070 ATCTATG
s panTro5.chr17                    16369375 5 + 83181570 --CCAGG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16274495 7 + 83442489 ATCTATG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4121351 7 +  4267968 ATCTATG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111041 5 -  2193130 --CCAGG
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30171216 5 - 77216781 --CCAGG
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28081522 5 - 80997621 --CCAGG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2127922 5 + 10377808 --CCAGG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2015772 5 -  8458610 --CTAGG
i cerAty1.NW_012006043v1           C 0 C 0
s manLeu1.NW_012106252v1            2220079 5 +  4244037 --CCAGG
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2219070 5 +  4569836 --CTAGG
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     9374 5 -    12755 --CCAGT
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1876585 5 +  3513951 --CCAGT
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              18121 5 -  4077172 --CGAGG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11948 5 -    94492 --CGAGG
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22861892 7 + 28711273 AACCAAG
i otoGar3.GL873537                 C 0 C 0
s dasNov3.JH570468                   626352 5 -   852752 --tcagg
i dasNov3.JH570468                 C 0 C 0
e chlSab2.chr16                    64962538 4 + 75148670 I

a score=1219120.000000
s hg38.chr17_JH159148v1_alt           58397 133 +    88070 TTAGGAAATAGAAATTAATTCCATTCTCTCCCAATTATATGCTCTTACTCATTCCCAAAGACAGCTAATCACTCTATC-AGTTGTAATCCTGTAGGTAATTTTTG-GT--TTTTTA--AAGTTTTCATGTGAATAAAAA
s panTro5.chr17                    16369380 131 + 83181570 TTAGGAAATAGAAATTAATGCCATTCTCTCCCAATTATATCCGCTTACTCATTTCCAA--ACAGCTAATCACTCTATCAAGTTATAATCCAGTAGATGA-CTTTG-GC--TTTTTA--AATTTTTCACGTGAATAAAAA
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16274502 133 + 83442489 TTAGGAAATAGAAATTAATTCCATTCTCTCCCAATTATATGCTCTTACTCATTCCCAAAGGCAGCTAATCACTCTATC-AGTTGTAATCCTGTAGGTAACTTTTG-GT--TTTTTA--AAGTTTTCATGTGAATAAAAA
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4121358 133 +  4267968 TTAGGAAATAGAAATTAATTCCATTCTCTCCCAATTATATGCTCTTACTCTTTCCCAAAGACAGCTAATCACTCTATC-AGTTGTAATCCTGTAGGTAACTTTTG-GC--TTTTTA--AAGTTTTCATGTGAATAAAAA
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111046 132 -  2193130 TTAGGAAATAGAAATTAATCCCATTCTCTCCCAGTTATATCCGCTTACTCATTTCCAA--ACAGCTAATCACTCTATCAAGTTATAATCCAGTAGGTGACTTTTG-GC--TTTTTA--AAATTTTCACGTGAATAAAAA
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30171221 134 - 77216781 TTAGGAAATAGAAATTAATCCCATTCTCTCCCAATTATATCCTCTTACTCTTTCTCAAGGACAACTAATCACTCTATCAAGTTGTAATCCAGTAGGTAACTTTTG-GC--TTTTTA--AAGTTTTCATGTGAATAAAAA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28081527 134 - 80997621 TTAGGAAATAGAAATTAATCCCATTCTCTCCCAATTATATCCTCTTACTCTTTCTCAAGGACAACTAATCACTCTATCAAGTTGTAATCCAGTAGGTAACTTTTG-GC--TTTTTA--AAGTTTTCATGTGAATAAAAA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2127927 134 + 10377808 TTAGGAAATAGAAATTAATCCCATTCTCTCCTAATTATATCCTCTTACTCATTCCCAAAGACAGCTAATCTCTCTATCAAGTTGTAATCCAGTAGGTAACTTTTG-GC--TTTTTA--AAGTCTTCATGTGAGTAAAAA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2015777 134 -  8458610 TTAGGAAATAGAAATTAATCCTATTCTTTCCTGATTATATCCTCTTATTCATTCCCAAAGACAACTAATCACTCTATCAAGTTGTAATCCAGTAGGTAAGTTTTG-GC--TTTTTA--AAGTTTTCATGTGAATAAAAA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64962542 134 + 75148670 TTAGGAAATAGAAATTAATCCCATTCTCTCCTAATTATATCCTCTTACTCATTCCCAAAGACAGCTAATCACTCTATCAAGTTGTAATCCAGTAGGTAACTTTTG-GC--TTTTTA--AAGTTTTCATGTGAGTAAAAA
i chlSab2.chr16                    I 4 C 0
s manLeu1.NW_012106252v1            2220084 134 +  4244037 TTTGGGAAGAGAAATTAATCCCATTCTCTCCTAATTATATCCTCTTACTCATTCCCAAAGACAGCTAATCTCTCTATCAAGTTGTAATCCAGTAGGTAACTTTTG-GC--TTTTTA--AAATTTTCATGTGAGTAAAAA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2219075 134 +  4569836 TTAGGAAACAGAAATTAATCCCATTCTTTCCCAATTATATCCTCTTATTCATTCCCAAAGACAGCTAATCACTCTATCAGGTTGTAATCCAGTAGGTAAGTTTTG-GC--TTTTTA--AAGTTTTCATGTGAATAAAAA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     9379 134 -    12755 TTACAAAATAGAAATCAATTCAGTTCCCTCCAA--TATATCTTCTTATTTGTCTTCAAAGGTAGCTAGTCACTCTATTAAGTTATAATCCTGAAGGTCAGTTTTG-GC--TTTTTCTTTGACTTGTATGTAAATAAAAA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1876590 128 +  3513951 TTACAAAATAGAAATTAATTCAATTCCCTCCAA--TATATTTTCTCATTTGTCTTCAAAGGTAGCTAGTCACTCTATCAAGTTATAATCCTGAAGGTCAGTTTTG-GC--TTTTTCTTTGACTTGTATGT------AAA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              18126 134 -  4077172 TTAGGTAATAGAAATTAATTCCCTTCTCTCCCAATTATATTCTCTTACTCATTCCCAAAAACAGCTAATCACTCTGGCAAGTTGTAATCCATTAGGTAAATTTTA-GC--TTTTTA--AAATTTTCATGTGAATAAAAA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              11953 134 -    94492 TTAGGAAATAGAAATTAATCCCCTTCTCTCCCAATTATATTCTCTTACTCATTCCCAAAAACAGCTAATCACTCTATCAAGTTGTAATCCATTAGGTAAATTTTA-GC--TTTTTA--AAATTTTCATGTGAATAAAAA
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22861899 133 + 28711273 TTAGG--ATGTAAATTAATTCCCCTCCTTCCAAATTACATCCTCTTACTCATCCCAATAGGTCCCTAATCTCTCTATTGATTTGTAACACTGTAGATACATTTTGAGG--TGTTTT--TGACATTTACGTAAAAGAAAA
i otoGar3.GL873537                 C 0 I 5356
s dasNov3.JH570468                   626357 126 -   852752 ttaaaaagcagaatttaatcctactgccttcaaattatactaccaccctcactcccaa-----gataatcactgtgct-gatcgcaaacta-caaatatgttatg-acagtttttg--acagttttaaatgaaata---
i dasNov3.JH570468                 C 0 C 0

a score=729840.000000
s hg38.chr17_JH159148v1_alt           58530 91 +    88070 GTATAGTATTTGCTTCTCTATTTCTTTGGCATAAA--CAAAAGTAATCTTTATCGCCTAGTCATTTTGGACTCTTCATATAAGCAAAGCAGCA
s panTro5.chr17                    16369511 91 + 83181570 TTATAGTATTTGCTTCTCTATTTCTTTGTTATAAT--CAAAAGGAATCGTTATcacctagtcattttggactcttcccgtcagcagagcagca
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16274635 91 + 83442489 GTATAGTATTTGCTTCTCTATTTCTTTGGCAGAAA--CAAAAGTAATCTTtatcgcctagtcattttggactcttcatataagcaaagcagca
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4121491 91 +  4267968 GTATAGTATTTGCTTCTCTATTTCTTTGGCATAAA--CAAAAGTAATCTTTATcgcctagtcattttggactcttcatataagcaaagcagca
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111178 91 -  2193130 TTATAGTATTTGCTTCTCTATTTCTTTGTTATAAT--CAAAAGGAATCGTtatcgcttagtcattttggactcttcctgtcagcagagcagca
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30171355 91 - 77216781 GTATAGTATTTGCTTCTCTATTTGTTTGTCATAAT--CAAAAGGAATCAGtatcacctagtcattttggactcttcctgtcagcagagcagca
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28081661 91 - 80997621 GTATAGTATTTGCTTCTCTATTTGTTTGTCATAAT--CAAAAGGAATCAGTATCacctagtcattttggactcttcctgtcagcagagcagca
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128061 91 + 10377808 GTGTAGTATTTACTTCTCTATTTCTTTGTCATAAA--CAAAAGTAATCCTTATcacctagtaattttggcctcttcctgtcagcagagcagca
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2015911 91 -  8458610 TTATAGTATTTGCTTCTCTCTTTATTTGGCATAAA--CAAAAGTAATATTTATCGCCGAGTCATTTTGGACTCCTCATACAAGCAAAGCAGCA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64962676 91 + 75148670 GTGTAGTATTTACTTCTCTATTTCTTTGTCATAAA--GAAAAGTAATCCTTGTCACCTAGTTATTTTGGCTTCTTCCTGTCAGCAGAGCAGCA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2220218 91 +  4244037 GTGTAGTATTTACTTCTCTATTTCTTTGTCATAAA--CAAAAGTAATCCTTATCACCTAGTAATTTTGACCTCTTCCTGTCAGCAGAGCAGCA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2219209 91 +  4569836 TTATAGTATTTGCTTCTCTATTTATTTGGCATAAA--CAAAAGTAATCTTTATCacctagtcattttggactcttcatacaagcaaggcagca
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     9513 90 -    12755 TCATAGAATTTGCTTCATTGTGTTTTTGGCATaat--tgaaagcagcaattataacctggtca-tttggacccttcatgtcagcacagcagca
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1876718 90 +  3513951 TTATAGAATTTGCTTCATTGTGTTTTTGGCGTAAT--CAAaagcagcaattataacctggtca-tttggacccttcatgtcagaacagcagca
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              18260 91 -  4077172 TTATGGTATTTGCTTCTCTACTTCTTTGGCATAAT--CAAAAGTAATCgttattgcttagtcattttggactcttcatgtcagcagaccagca
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              12087 90 -    94492 TTATGGTATTTGCTTCTCTATTTCTTAGGCATAAT--CAAAA-TAATTGTTATTGcttagtcattttggactcttcatgtcagcagaccagca
i aotNan1.NW_018505111v1           C 0 C 0
s dasNov3.JH570468                   626483 91 -   852752 atatagaattggcttctttctcactgcattatcattctgaaatttgtcttcata--ctcatcataatttactcatcattctagctgtgtagta
i dasNov3.JH570468                 C 0 I 3664
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=956994.000000
s hg38.chr17_JH159148v1_alt           58621 116 +    88070 GAC-AGAGAAAGTAGTTACTATTTGGTGAGGGATAATTACCCTCAAGCCATATAGTGTA-GCAGAATATATCTATAGCTCAGGAGATTTACTGAGtatattaatttactagcactgcc
s panTro5.chr17                    16369602 116 + 83181570 gac-agaggaaggagttactatttggtgaggggtaattATCTTTAAGCCATATAGTGTA-GCAGAATATATCTATAGCTCAGGATACTTAGTAAGtatattaacttaccagcactgcc
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16274726 116 + 83442489 gac-agagaaagtagttactatttggtgagggataattACCCTCAAGCCATATAGTGTA-GCAGAATATATCTATAGCTCAGGAGATTTACTGAGtgtattaatttactagcactgcc
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4121582 116 +  4267968 gac-agagaaagtagttactatttggtgagggataattaccctcaagccatatagtgta-gcagaatatatctatagctcaggagatttactgagtatattaatttactagcactgcc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111269 116 -  2193130 gac-agagaaaggagttactatttggtgaggggtaattatctttaagctataaagTGTA-GCAGAATATATCTATAGCTCAGGATACTTAGTAAGtatattaacttactagcactgcc
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30171446 116 - 77216781 gac-agagaaaggagttactatttggtgaggggtaattatcctTAAGCCATATAGTATA-GCAGAATGTATTTATAGCTCAGGATACTTAGTAAGtatattaacttactagcactgcc
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28081752 116 - 80997621 gac-agagaaaggagttactatttggtgaggggtaattatccttaaGCCATATAGTATA-GCAGAATGTATTTATAGCTCAGGATACTTAGTAAGtatattaacttactagcactgcc
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128152 116 + 10377808 gac-agagaaaggagttactatttggtgaggggtaattatcctTAAGCCATATAGTATA-GCAGAATGTATTTATAGCTCAGGATACTTAGTAAGtatattaacttactagcactgcc
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2016002 116 -  8458610 GAG-AGAGAAAGGAGTTACTATTTGGCGAGGGATAATTACCCTCAAGCCATATAGTTTA-GCAAAATATATCAATAGCTCAGGAGGTTTACTGAAtatattaatttactagcactgcc
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64962767 117 + 75148670 GACAAGAGAAAGGAGTTACTATTTGATGACGGGTAATTATCCTCAAGCCATATAGTGTA-GGAGAATGTATCTATACCTCAGAAGATTTACTTAGtatattgatttactaacactgcc
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2220309 117 +  4244037 GACAAGGGAAAGGAGTTACTATTTGATGTTGGGTAATTATCCTCAAGCCATACAGTGTA-GGAGAATATATCTATACCTCAGAAGATTTACTTAGtatattgatttactagcactgct
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2219300 116 +  4569836 gag-agagaaaggagttactatttggtgagggataattaccctcaagccatatagtgta-gcaaaatatatctatagctcaggagatttactgagtatattaatttactagcactgcc
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     9603 115 -    12755 gat-agataaaggagttactatTTCGTGA-GGATAATTTTCACAAAGCCATATAGCATAGGGAGAATGTATCTGGAACTCAAGAGATTTACTGGAtatattaatttatt-acactgcc
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1876808 116 +  3513951 gat-agataaaggagttactatTTCATGAGGGATAATTTTCACAAAGCCATATAGTgtagggagaatgtatctggaactcaagagatttactggatatattaatttatt-acactgcc
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              18351 110 -  4077172 gac-agagaagggagttactatttggtgaggagcaattatcctCCAGCCACCTACTGTA-GGAGAATAT------AGCTCAGGAGATTTACTGAGtatattaatttactggcactgcc
i cebCap1.NW_016107543v1           C 0 I 1197
s aotNan1.NW_018505111v1              12177 110 -    94492 gac-agaggaaggagttactatttggtgaggagtaattatcttCAAGCCACCTATTGTA-GGAGAATAT------AGCTCAGGAGATTTACTGAGtatattaatttactagcactgcc
i aotNan1.NW_018505111v1           C 0 C 0
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=453041.000000
s hg38.chr17_JH159148v1_alt           58737 93 +    88070 ctg-atgaattactg-aaaaaaagtggcttaaatttat-ttatcaaagttctgaaggcctcttttctgaaattaaggtgttggcaatgttgttttc
s panTro5.chr17                    16369718 80 + 83181570 ata-ataaattactgtaaaccaagtggcttaaatttatcttttcacag---------------ttcagaaattaaggttttggcaatgttgttttc
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16274842 93 + 83442489 ctg-ataaattactg-aaaaaaagtggcttaaatttat-ttatcaaagttctgaaggcctcttttctgaaattaaggtgttggcaatgttgttttc
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4121698 93 +  4267968 ctg-atgaattactg-aaaaaaagtggcttaaatttat-ttatcaaagttctgaaggcctcttttctgaaattcaggtgttggcaatgttgttttc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111385 80 -  2193130 ata-ataaattactgtaaaccaagtggcttaaatttagttttttacag---------------ttcggaaattaagatgttggcaatgttgttttc
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30171562 77 - 77216781 atg-ataaattactgtaaaccaagtggcttaaatttattttttcacagt---------------tccaaaattaaggtgtttgcaa---tgttttc
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28081868 77 - 80997621 atg-ataaattactgtaaaccaagtggcttaaatttattttttcacagt---------------tccaaaattaaggtgtttgcaa---tgttttc
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128268 77 + 10377808 atg-ataaattactgtaaaccaagtggcttaaatttattttttcacagt---------------tccaaaattaaggtgtttgcaa---tgttttc
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2016118 93 -  8458610 ctg-atgaattactg-aaaaaaagtggcttcaattta-tttatcaaagttatgaagacctctactctgaaatcaaggtgttggcaatattgttttc
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64962884 94 + 75148670 atg-atgaattactgcaaaccaagt-gcttaaatttattttttcacagtcccaaaggctattagtccgaaattaaggtgttggtaatgttgttttg
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2220426 95 +  4244037 atg-atgaattactgcaaaccaagtggcttaaatttattttttcatggtcccaaaggctattagtctgaaattaaggtgttagcaatgttgttttc
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2219416 93 +  4569836 ctg-atgaattactg-aaaaaaagtggcttcaattta-tttatcaaagttatgaagacctctattctgaaattaaggtgttggcaatattgttttc
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     9718 79 -    12755 ----atgaaaaactatga--caaatggcttaaatgtatgtt---acagttctgaagg--------ctaaaattaaggtgttggcaatgctgttttc
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1876924 82 +  3513951 ----atgaaaaactatga--caagtggcttaaatttacgttctcacagttctgaagg--------ctaaaattaaggtgttggcaatgctgttttc
i saiBol1.JH378271                 C 0 C 0
s aotNan1.NW_018505111v1              12287 96 -    94492 ataaacaaattactgcaaatcaagtgacttaaatttgttttgtcacagttccgaaggctactagtctaaaattaaggtgttggcaatgttgttttc
i aotNan1.NW_018505111v1           C 0 I 1099
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=2242587.000000
s hg38.chr17_JH159148v1_alt           58830 370 +    88070 atctgaagactgcgagggaagtatctgttccacgtctctctccctgacgtgtcaaagtctatcatctccaagtgtgtttgacataatttttctattatatccatact-gtctctgaatttctcccttgtgaatagaca-cagtcatatttaatcagaggcctaattgtttccaatatgaccttgtcttatcagataacactttagatgattctatttgaatatgaattttgagggacGCAAATGAACCCATAACACTGCAGAatctcacagtgtgtccatgcctagtgataaccacaaatgagtaaaaacaacaatcacgg-tggacaatggtatagtaaccaggggctcagacccttcaggaaggatgctct
s panTro5.chr17                    16369798 372 + 83181570 atctgaagcctgtgagggaagtacatgttccaggtctctctccttgacttgttgatgtctatcatttccatgtgtgtttgacataatttttctgttacatgcatgctggtctctgaatttcccccttttgtatagacatcagtcatatttaatcagaggcctaattgtttccaatatgaccttgccttatcacataacactttaaatgattctatttgaatatgagttttgggggacacaaattaacccataacaCTGGAGAATCTCATAGTGTGTCCATGTCCAGTGATAACCACAAATCGGTAAGAACAGCAATCACAG-TGGACAGTGGTATAGTAACTAGAGGCTCAGACAATTTAGGAAGGAagttat
i panTro5.chr17                    C 0 I 9
s panPan2.chr17                    16274935 368 + 83442489 atcggaagactgcgagggaagtatctgttccaggtctctctccctgacgtgtcgaagtctatcatctccaa--gtgtttgacataatttttctactatatccatact-gtctctgaatttctcctttgtggatagaca-cagtcatatttaatcagaggcctaattgtttccaatatgaccctgtcttatcagataacattttagatgattctatttgaatatgaattttgagggacacaaatgaacccataacaCTGCAGAatctcatagtgtgtccatgcccagtgataaccacaaatgagtaaaaacagcaatcacgg-tggacaatggtatagtaaccagggtctcagacccttcaggaaggatgctct
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4121791 370 +  4267968 atctgaagactgcgagggaagtaactgttccaggtctctctccctgacgtgtcgaagtctatcatctccaagtgtgtttgacataatttttctattatatccatact-atctctgaatttctcccttgtggatagaca-cagtcatatttaatcagaggcctaattgtttccaatatgaccttgtcttatcagataacattttagatggttctatttgaatatgaattttgagggacacaaatgaacccataacactgcagaatctcatagtgtgtccatgcccagtgataaccacaaatgagtaaaaacagcaatcacgg-tggacaatggtatagtaaccaggggctcagacccttcaggaaggatgctct
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111465 371 -  2193130 atctgaagcctgtgagggaagtacctgttccaggtctctctccttgacttgttgatgtctatcatttccatgtgcgtttgacataatttttctgttatatgcatact-gtctctgaatttcccccttttatatagacatcagtcatatttaatcagaggcctaattgtttccaatatgaccttgtcttatcacataacactttaaatgattctatttGAATATGAGTTTTGGGGGAGAAAAATTAACCCATAAcactggagaatctcatagtgtgtccatgtccagtgataaccagaaatcagtaagaacagcaatcacag-tggacagtggtatggtaactagaggctcagacccttcaggaaggaagttct
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30171639 360 - 77216781 atctgaaggctgtgagggaagtgtctgttccacgtttctctccttgacttgttgatgtctatcatttccatgtatgtttgacataatttttctactatatgcatact-gtctctgaatttcccctttctatgcagacatcagtcatatttaatcagaggaccaattgtttccaatatgactttgtcttaacatgtaacatttcaaatgcttttacttgtgtatgaattttggtggacacaaattaacccataacaCTGGCGAatctcat--agtgtccatgcccaatgataaccacaaatg---------agcaatcccag-tggacaatggtatagtaactagaggctcagacccttcaggaaggaagttct
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28081945 362 - 80997621 atctgaaggctgtgagggaagtgtctgttccacgtttctctccttgacttgttgatgtctatcatttccatgtatgtttgacataatttttctactatatgcatact-gtctctgaatttctcctttctatgcagacatcagtcatatttaatcagaggaccaattgtttccaatatgactttgtcttaacATGTAACATTTCAAATGCTTTTACTTGTGtatgaattttggtggacacaaattaacccataacaCTGGCGAATCTCATAGAGTGTccatgcccaatgataaccacaaatg---------agcaatcccag-tggacaatggtatagtaactagaggctcagacccttcaggaaggaagttct
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128345 362 + 10377808 atctgaaggctgtgagggaagtgtctgttccacgtttctctccttgacttgttgatgtctatcatttccatgtgtgtttgacataatttttctactatatgcatact-gtctctgaatttcccctttctatgcagacatcagtcatatttaatcagaggaccaattgtttccaatatgactttgtcttaacatgtaacatttcaaatgcttttacttgtgtatgaattttggtggacacaaattaacccataacaCTGGCGAATCTCATAGAGTGTccatgcccaatgataaccacaaatg---------agcaatcccag-tggacgatggtatagtaactagaggctcagacccttcaggaaggaagttct
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2016211 369 -  8458610 atctgaaggctgtgagagacgtatctgttccaggtttctctccttgacttgtagatgtctatcatttccatgtgtgtttgacagaatttttctactatatgcatact-gtctccgaatttctcccttgta-atagaca-cagtcatatttaatcagaggcctaattgtttccagtgtgaacttatcttatcagataacattttaaatgattctatttGAATTTGAATTTTGAGGGACACAAATTAACCCATAACATTGCAGAatctcatagtgtgttcatgcccagcgataaccacaaatgagtaaaaatagcaatcacag-tggacaattgtatagaaactagaggctcagacccttcaagaaggaagctct
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64962978 365 + 75148670 atctgaaggctgcgagggaagtatctgttcccagtctttctccttaacttgcagatgtctatcatttccatgtgtgtttcatataatttttctactatat-catact-gtct--gaatttcccccatgta--tagatattagtcatatttaatcagagaccTCAGTGTTTCCCATATGAACTTGTCTT-TCACATAACATTTTAAATGATTCTATTTGTATATGAATTTTGGTGGACATGAATTAACCCATAACACTGCAGAatctcatagtgtgtccatgcccagtgataaccacagatgagtaagaacagcaatcacag-gggacagtggtatagtaactagaggctcagaccctttaggaaggaagttct
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2220521 366 +  4244037 gtctgaaggctgcgagggaaggatctgtttccggtctttctcctTAACTTGCAGATGTCTATTATTTCCATGTGTGTTTCATATAATTTTTCTACTATAT-CATACT-GTCT--GAATTTCCCCCATGTA--TAGATATCAGTGATATTTAATCAGAGACCTAAGTGTTTCCCATACGAACTTGTCTTGTCACATAACATTTTAAATGATTCTATTTGTGTATGAATTTTGGTGGACACGAATTAACCCATAACACTGCAGAatctcatagtgtgtccatgcccagtgataaccacagatgagtaagaacagcaatcacag-tggacagtggtatagtaacgagaggctcagacccttcaggaaggaagttct
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2219509 369 +  4569836 atctgaaggctgtgagagaagtatctgttccaggtttctctccttgacttgtagatgtctatcatttccatgtgtgtttgacagaatttttctactatatgcatact-gtctccgaatttctcccttgta-gtagaca-cagtcatatttaatcagaggcctaattgtttccaatttcacattgtcttatcagataacattttaaatgattctatttgaatatgaattttgagggacacaaattaacccataacactgcagaatctcatagtgtgtccatgcccagcgataaccacaaatgagtaaaaacagcaatcacag-tagacaattgtatagaaactagaggctcagacccttcaggaaggaagctct
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     9797 369 -    12755 ctctgaaggctgtgaaggaagtgcctgttccaggtcactctccttgacctgtggatgtctatcttctccatgtgtctcttacatcatcttccctctctatgcatcct-gttt--taattcccccttttcattcagacatcagtcatattgaatcagaggcacaatttattccaatattacctcatcttaacatattgca-tttaaatgaccctatttGAATATAAATTCTTGGGGACATAACTGAACCCATAACCCTGGAGTATCTTATAGTGTGTCCATGCACAGTGATACACACAAATGAGTAACAAAagcaaccacagttggacaatggtatagtaactagagagtcagatccattagtcaggaagttca
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1877006 369 +  3513951 ctctgagggctgtgagggaagtgcctgttccaggttgctctccttgacctgtggatatctatcttctccatatgtctcttacatcatcttccctctctatgcatcct-gttt--taattctcccttttcatacagacatcagtcatattgaatcagaggcacaatttatcccaatatcacctcatcttaacatattgca-tttaaatgaccctatttgaatataaattcttggggacacaattcaacccataacccgggagtatcttatagtgaatccatacacagtgatacacacaaatgagtaacagaagcaaccacagctggacaatggtttagtagctagagagtcagatccattagtcaggaagttct
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=49350.000000
s hg38.chr17_JH159148v1_alt           59200 7 +    88070 gagctac
s panPan2.chr17                    16275303 7 + 83442489 gagctac
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122161 7 +  4267968 gagctac
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111836 7 -  2193130 gagctac
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30171999 7 - 77216781 gagctac
i rheMac8.chr16                    C 0 I 27
s macFas5.chr16                    28082307 7 - 80997621 gagctac
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128707 7 + 10377808 gagctac
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2016580 7 -  8458610 gagctac
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64963343 7 + 75148670 gagctat
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2220887 7 +  4244037 gagctac
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2219878 7 +  4569836 gaactac
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    10166 7 -    12755 gagctac
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1877375 7 +  3513951 gagctac
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e panTro5.chr17                    16370170 9 + 83181570 I

a score=9977.000000
s hg38.chr17_JH159148v1_alt           59207 2 +    88070 tc
s panPan2.chr17                    16275310 2 + 83442489 tc
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122168 2 +  4267968 tc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111843 2 -  2193130 tc
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28082314 2 - 80997621 tt
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128714 2 + 10377808 tt
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2016587 2 -  8458610 tc
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64963350 2 + 75148670 tc
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2220894 2 +  4244037 tc
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2219885 2 +  4569836 tc
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    10173 2 -    12755 tc
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1877382 2 +  3513951 tc
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e rheMac8.chr16                    30172006 27 - 77216781 I
e panTro5.chr17                    16370170 9 + 83181570 I

a score=96754.000000
s hg38.chr17_JH159148v1_alt           59209 26 +    88070 tatca-gcagttatctagaccaaca--ag
s panTro5.chr17                    16370179 27 + 83181570 tatcaggcagttatccagATCAAGA--AG
i panTro5.chr17                    I 9 C 0
s panPan2.chr17                    16275312 26 + 83442489 tatca-gcagttatctagaccaaca--ag
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122170 26 +  4267968 tatca-gcagttatctagaccaaca--ag
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111845 27 -  2193130 tatcaggcagttatccagaccaaga--ag
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28082316 25 - 80997621 cttcatgtggttacctagaccaaga----
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128716 25 + 10377808 cttcatgtggttacctagaccaaga----
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2016589 27 -  8458610 tatcaggcagttatctagaccaacaag--
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64963352 26 + 75148670 tatca-gcaattatctagaccaaga--ag
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2220896 26 +  4244037 tatca-gcaattaattagaccaaga--ag
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2219887 27 +  4569836 tatcaggcagttatctagaccaaca--ag
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    10175 27 -    12755 cttcaggcaattatctagatcaacc--ag
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1877384 27 +  3513951 cttcaggcaattatctacatcaacc--ag
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e rheMac8.chr16                    30172006 27 - 77216781 I

a score=267380.000000
s hg38.chr17_JH159148v1_alt           59235 37 +    88070 agtgctggccaggggtgaagggaGAATAGAACTCTTG
s panTro5.chr17                    16370206 37 + 83181570 ACTGCTGGCCAGCGGTGAAGGGAGAATAGAACTGGTG
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16275338 37 + 83442489 agtgctggccaggggtgaagggagaatagaaCTCTTG
i panPan2.chr17                    C 0 T 5381
s gorGor5.CYUI01015385v1            4122196 37 +  4267968 agtgctggccaggggtgaagggagaatagaaCTCTTG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111872 37 -  2193130 agtgctggccaggggtgaagggagaatagaaccggtg
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30172033 37 - 77216781 agtgctggccagggatgaaaggagaatagaactggtg
i rheMac8.chr16                    I 27 C 0
s macFas5.chr16                    28082341 37 - 80997621 agtgctggccagggatgaaaggagaatagaactggtg
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128741 37 + 10377808 agtgctggccagggatgaaaggagaatagaactggtg
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2016616 37 -  8458610 agtgctggccaggggtgaagggagaatagaactggtG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64963378 37 + 75148670 aatgctgtccaggggtgaagggagaatagaactggta
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2220922 37 +  4244037 aatgctgtccaggggtgaatggagaatagaactggtg
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2219914 37 +  4569836 agtgctggccagggatgaagggagaatagaactaatg
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    10202 37 -    12755 agtgctggccaggggtgaagggaatacagaactggtg
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1877411 37 +  3513951 agtgctggccaggggtgaagggaatatagaactggtg
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=319423.000000
s hg38.chr17_JH159148v1_alt           59272 52 +    88070 GTAATTAACGGAGTTTATGAAACTTAGGTGCACTGTATTATAGCAGAAGTA-A
s panTro5.chr17                    16370243 52 + 83181570 GTAATTAACGGAGACTGTGAATCTCAGGTGCACTGTACTATAGCAGCAGTA-A
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16269994 52 + 83442489 gtaattaatggagcttatgaatctcaggtgCACTGTATTATAGCAGCAGTA-A
i panPan2.chr17                    T 5381 C 0
s gorGor5.CYUI01015385v1            4122233 52 +  4267968 GTAATTAACTGAGTTTATGAAACTTAGGTGCACTGTATTATAGCAGAAGTA-A
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111909 52 -  2193130 gtaattaatggagattgtgaatctcaggtgcactgtactatagcagcagta-a
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30172070 52 - 77216781 gtaattaatggagattgtgaatctcaggtgCACTGTATTACAGCAGCAGTA-A
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28082378 52 - 80997621 gtaattaatggagattgtgaatctcaggtgCACTGTATTACAGCAGCAGTA-A
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128778 52 + 10377808 gtaattaatggagattgtgaatctcaggtgCACTGTATTACAGCAGCAGTA-A
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2016653 52 -  8458610 ATAATTAATGGAGTTTATGAAACTCGGGTGCACTGTATTATAGCAGAAGTA-A
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64963415 52 + 75148670 ataattaatggagattgtgaatctcaAGTGCACTGTATTACAGCAGCAGTA-A
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2220959 52 +  4244037 ataattaatggagattgtgaatctcaggtgCACTGTATTACAGCAGCAGTA-G
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2219951 52 +  4569836 gTAATTAATGGAGTTTGTGAAACTCAGGTGCACTGTATTATAGCAGAAGTA-A
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    10239 51 -    12755 gaaactgatggagattatgaatctcagAAGGAACCCATTACAGCAGAAGTA--
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1877448 52 +  3513951 gaaactgatggagattataaatctcagAATTAACTCATTACAGCAGCAGTAt-
i saiBol1.JH378271                 C 0 T 5993
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=341816.000000
s hg38.chr17_JH159148v1_alt           59324 77 +    88070 GTGTAGATTATTTAATTGGCCTTCGTTTTATATCTCActtcctctcctttcttttcctttccttc----ctctttctt-----------------ctt
s panTro5.chr17                    16370295 77 + 83181570 GTGTAGCTTATTTCATTGGCCTTCATTTTACATCTCActtcctctcctttcttttcatttccttc----ttctctctc-----------------ctt
i panTro5.chr17                    C 0 T 5592
s panPan2.chr17                    16270046 77 + 83442489 GTGTAGCTTATTTCATTGGCCTTCATTTTATGTCTCACTTCCTCCCCCAGcttttcgtttccttc----ttcattttt-----------------ctt
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122285 76 +  4267968 GTGTAGATTATTTAATTGGCCTTCA-TTTATATCTCActtcctctcctttcttttcctttccttc----ttctttctt-----------------ctt
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2111961 77 -  2193130 gtgtagcttatttcattggccttcattttACATCTCActtcctctcctttcttttcatttccttc----ttctctctc-----------------ctt
i nomLeu3.chrUn_GL397460_1         C 0 I 6
s rheMac8.chr16                    30172122 76 - 77216781 GTGTTG-CTATTTCACTGGTATTCATTTTACAtcttacttcctctcctttcttttcctttacttc----ttctctctc-----------------ctt
i rheMac8.chr16                    C 0 I 2
s macFas5.chr16                    28082430 76 - 80997621 GTGTTG-CTATTTCACTGGTATTCATTTTACAtcttacttcctctcctttcttttcctttacttc----ttctctctt-----------------ctt
i macFas5.chr16                    C 0 I 2
s macNem1.NW_012014910v1            2128830 76 + 10377808 GTGTTG-CTATTTCACTGGTATTCATTTTACATCTTACttcctctcctttcttttcctttacttc----ttctctctc-----------------ctt
i macNem1.NW_012014910v1           C 0 I 2
s cerAty1.NW_012006043v1            2016705 77 -  8458610 GTGTAGATTATTTAATTGGCCTTCATTTTATATCTCActtcctctcctttcttttcctttccttc----ttctttcct-----------------ttc
i cerAty1.NW_012006043v1           C 0 I 2
s chlSab2.chr16                    64963467 93 + 75148670 GTGTAACTTATTTCATTGGCCTTCATTTTACATCTAACGTCCTCCTCTTtttctttcttt-ctct----ctttcttccttctttctttcttttctttt
i chlSab2.chr16                    C 0 I 2
s manLeu1.NW_012106252v1            2221011 76 +  4244037 GTGTAGCTTATGTCATTGGCCTTCATTTTACATCTCACttcctcctttttctttttcttt-cttt----ctctctgtc-----------------ttt
i manLeu1.NW_012106252v1           C 0 I 2
s colAng1.NW_012122154v1            2220003 77 +  4569836 GTGTAGATTATTTAATTGTTCTTCATTTTATATCTCACTTCCTCCCctttcttttcctttccttc----ttctttctt-----------------tct
i colAng1.NW_012122154v1           C 0 I 2
s calJac3.chr5_ACFV01180105_random    10290 34 -    12755 ----------------------------------tcttttctcttcttttcctttctttgctttt------------------------------ctt
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1871507 81 +  3513951 CTGTTCCTTGTTCCATTGGCCTTCATTTTATATATCACTCCCCCTCCTTTCTTCTCTTAGCTTCTTAATTTCTAccta-----------------cct
i saiBol1.JH378271                 T 5993 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=19592.000000
s hg38.chr17_JH159148v1_alt           59401 9 +    88070 tctttcttt
s panTro5.chr17                    16364780 9 + 83181570 tctttcttt
i panTro5.chr17                    T 5592 C 0
s panPan2.chr17                    16270123 9 + 83442489 tctttcttt
i panPan2.chr17                    C 0 I 5596
s gorGor5.CYUI01015385v1            4122361 9 +  4267968 tgtttcttt
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112044 9 -  2193130 ccttccttc
i nomLeu3.chrUn_GL397460_1         I 6 C 0
s rheMac8.chr16                    30172200 7 - 77216781 tttctct--
i rheMac8.chr16                    I 2 C 0
s macFas5.chr16                    28082508 7 - 80997621 tttctct--
i macFas5.chr16                    I 2 C 0
s macNem1.NW_012014910v1            2128908 7 + 10377808 tttctct--
i macNem1.NW_012014910v1           I 2 C 0
s cerAty1.NW_012006043v1            2016784 7 -  8458610 tctttct--
i cerAty1.NW_012006043v1           I 2 C 0
s chlSab2.chr16                    64963562 7 + 75148670 cctttct--
i chlSab2.chr16                    I 2 C 0
s manLeu1.NW_012106252v1            2221089 7 +  4244037 tccttct--
i manLeu1.NW_012106252v1           I 2 C 0
s colAng1.NW_012122154v1            2220082 7 +  4569836 tctttct--
i colAng1.NW_012122154v1           I 2 C 0
s calJac3.chr5_ACFV01180105_random    10324 9 -    12755 tctttctct
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1871588 9 +  3513951 cccttcttc
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=49886.000000
s hg38.chr17_JH159148v1_alt           59410 25 +    88070 ctttctttcttttc-----tttctttcttt---
s panTro5.chr17                    16364789 22 + 83181570 ctttct---tttcc-----ttccttccttt---
i panTro5.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122370 22 +  4267968 cttttc---ctttc-----ttccttccttt---
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112053 25 -  2193130 ttttccttccttcc-----tttctttcttc---
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30172207 25 - 77216781 ctccctccctccct-----tttctttcttt---
i rheMac8.chr16                    C 0 I 14
s macFas5.chr16                    28082515 24 - 80997621 ctccctccctccct-----tttctttctt----
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128915 25 + 10377808 ctccctccctccct-----tttctttcttt---
i macNem1.NW_012014910v1           C 0 I 14
s cerAty1.NW_012006043v1            2016791 24 -  8458610 ttccttccttcctt-----tctctttctt----
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64963569 25 + 75148670 ttctttctttcttt-----ctttctttctt---
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2221096 25 +  4244037 ttcttttcttttct-----tgtctttcttt---
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2220089 30 +  4569836 ttctttctttctttctttctttctttcttt---
i colAng1.NW_012122154v1           C 0 I 12634
s calJac3.chr5_ACFV01180105_random    10333 27 -    12755 cgttccttccttcc-----ttccttccttc-ct
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1871597 28 +  3513951 ccttcttccctttc-----tcccttccttctct
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e panPan2.chr17                    16270132 5596 + 83442489 I

a score=17750.000000
s hg38.chr17_JH159148v1_alt           59435 22 +    88070 tccttccttccttcctt-----ttttc
s panTro5.chr17                    16364811 14 + 83181570 ttctcccttcc-------------tgc
i panTro5.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122392 14 +  4267968 ttctcccttcc-------------tgc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112078 27 -  2193130 ttcttcctttctttcttccctgctttc
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28082539  7 - 80997621 ------------tcttt-----ct---
i macFas5.chr16                    C 0 I 4
s cerAty1.NW_012006043v1            2016815 22 -  8458610 tttttccttccttcttt-----ctttc
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64963594 22 + 75148670 tctttctttctttcttt-----ctttc
i chlSab2.chr16                    C 0 I 28
s manLeu1.NW_012106252v1            2221121 22 +  4244037 tctttctttttttcctt-----ctttc
i manLeu1.NW_012106252v1           C 0 T 5508
s calJac3.chr5_ACFV01180105_random    10360 22 -    12755 tccttccttccttcctt-----ccttc
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1871625 22 +  3513951 tctttcctccctctctt-----cttcc
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e colAng1.NW_012122154v1            2220119 12634 +  4569836 I
e macNem1.NW_012014910v1            2128940 14 + 10377808 I
e rheMac8.chr16                    30172232 14 - 77216781 I
e panPan2.chr17                    16270132 5596 + 83442489 I

a score=12328.000000
s hg38.chr17_JH159148v1_alt           59457 3 +    88070 ctc
s panTro5.chr17                    16364825 3 + 83181570 ctc
i panTro5.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122406 3 +  4267968 ctc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112105 3 -  2193130 ttc
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30172246 3 - 77216781 ctc
i rheMac8.chr16                    I 14 C 0
s macFas5.chr16                    28082550 3 - 80997621 ctc
i macFas5.chr16                    I 4 C 0
s macNem1.NW_012014910v1            2128954 3 + 10377808 ctc
i macNem1.NW_012014910v1           I 14 C 0
s cerAty1.NW_012006043v1            2016837 3 -  8458610 ctc
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64963644 3 + 75148670 ctc
i chlSab2.chr16                    I 28 I 44
s calJac3.chr5_ACFV01180105_random    10382 3 -    12755 ctt
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1871647 3 +  3513951 ttc
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e manLeu1.NW_012106252v1            2221143 5508 +  4244037 T
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e colAng1.NW_012122154v1            2220119 12634 +  4569836 I
e panPan2.chr17                    16270132 5596 + 83442489 I

a score=34548.000000
s hg38.chr17_JH159148v1_alt           59460 18 +    88070 ccttcctccctcccttcc
s panTro5.chr17                    16364828 18 + 83181570 cctccctccctcccttcc
i panTro5.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122409 18 +  4267968 cctccctccatcccttcc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112108 18 -  2193130 cttccttttctcttttct
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30172249 18 - 77216781 ccttccttccttcctttt
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28082553 14 - 80997621 tctcccttccttcc----
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128957 14 + 10377808 ccttccttccttcc----
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2016840 14 -  8458610 ccttccttcctttc----
i cerAty1.NW_012006043v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    10385 18 -    12755 ccttccttccttccttcc
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1871650 18 +  3513951 cctttcttccctcctttc
i saiBol1.JH378271                 C 0 I 5832
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e manLeu1.NW_012106252v1            2221143 5508 +  4244037 T
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e colAng1.NW_012122154v1            2220119 12634 +  4569836 I
e chlSab2.chr16                    64963647 44 + 75148670 I
e panPan2.chr17                    16270132 5596 + 83442489 I

a score=30977.000000
s hg38.chr17_JH159148v1_alt           59478 21 +    88070 cttcccttctctctcccttt---c
s panTro5.chr17                    16364846 24 + 83181570 cttcccttctctctctctctatat
i panTro5.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122427 24 +  4267968 cttcccttctctctctctctatat
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112126 21 -  2193130 tttcctttctttctctcttt---c
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30172267 21 - 77216781 tttcctttctttctttcttt---c
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28082567 20 - 80997621 -ttcctttttttcttccttt---c
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128971 20 + 10377808 -ttcctttttttcttccttt---c
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2016854 19 -  8458610 --tccgcctaccctctctct---c
i cerAty1.NW_012006043v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    10403 15 -    12755 ------tAttctctcttgct---c
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1877500 16 +  3513951 -----cttttctcttctttt---c
i saiBol1.JH378271                 I 5832 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e manLeu1.NW_012106252v1            2221143 5508 +  4244037 T
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e colAng1.NW_012122154v1            2220119 12634 +  4569836 I
e chlSab2.chr16                    64963647 44 + 75148670 I
e panPan2.chr17                    16270132 5596 + 83442489 I

a score=52377.000000
s hg38.chr17_JH159148v1_alt           59499 36 +    88070 tctctctt------tc-tttctt--tctcttt------ctttctttctttt
s panTro5.chr17                    16364870 41 + 83181570 tctttctt------tc-tttcgg--tctcttt-ccttccttccttccttcc
i panTro5.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122451 43 +  4267968 tctttctt------tcttttctt--tctttctttctttctttctttctttc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112147 37 -  2193130 tttttctt------tc-tttctt--tctcctt-----ccttccttcctttt
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30172288 36 - 77216781 --tttctt------tc-tttctt--tctttct----ttctttctttctttc
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28082587 36 - 80997621 --tttctt------tc-tttctt--tctttct----ttctttctttctttc
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2128991 30 + 10377808 --tttctt------tc---------tctttct----ttctttctttctttc
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2016873 23 -  8458610 --t----------------------tttctct----ttctttctttctttc
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64963691 40 + 75148670 tctttctt------tc-tttctttctttttct----ttccttccttccttc
i chlSab2.chr16                    I 44 I 3
s calJac3.chr5_ACFV01180105_random    10418 24 -    12755 --------------tt-tttctt--cctctct--attttttat--------
i calJac3.chr5_ACFV01180105_random C 0 T 5824
s saiBol1.JH378271                  1877516 45 +  3513951 -ctttctttgcatttc-tttctt--tctctct--ccttccttccttctttc
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e manLeu1.NW_012106252v1            2221143 5508 +  4244037 T
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e colAng1.NW_012122154v1            2220119 12634 +  4569836 I
e panPan2.chr17                    16270132 5596 + 83442489 I

a score=63924.000000
s hg38.chr17_JH159148v1_alt           59535 21 +    88070 tatctttctttctttcttttt
s panTro5.chr17                    16364911 21 + 83181570 ttccttccttccttccttcct
i panTro5.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122494 21 +  4267968 tttctttctttctttctttct
i gorGor5.CYUI01015385v1           C 0 I 15
s nomLeu3.chrUn_GL397460_1          2112184 21 -  2193130 ctcttttcttttcttttcttt
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30172324 21 - 77216781 tttctttctttctttctttct
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28082623 21 - 80997621 tttctttctttctttctttct
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2129021 21 + 10377808 tttctttctttctttctttct
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2016896 21 -  8458610 tttctttctctctctctttct
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64963734 21 + 75148670 tttctttctttctttctttct
i chlSab2.chr16                    I 3 C 0
s calJac3.chr5_ACFV01180105_random     4618 21 -    12755 TATATTTACTTtttctttcct
i calJac3.chr5_ACFV01180105_random T 5824 C 0
s saiBol1.JH378271                  1877561 14 +  3513951 -------cttccttccttccc
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e manLeu1.NW_012106252v1            2221143 5508 +  4244037 T
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e colAng1.NW_012122154v1            2220119 12634 +  4569836 I
e panPan2.chr17                    16270132 5596 + 83442489 I

a score=6006.000000
s hg38.chr17_JH159148v1_alt           59556 1 +    88070 t
s panTro5.chr17                    16364932 1 + 83181570 t
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16275728 1 + 83442489 t
i panPan2.chr17                    I 5596 C 0
s gorGor5.CYUI01015385v1            4122530 1 +  4267968 t
i gorGor5.CYUI01015385v1           I 15 C 0
s nomLeu3.chrUn_GL397460_1          2112205 1 -  2193130 t
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30172345 1 - 77216781 t
i rheMac8.chr16                    C 0 I 4
s macFas5.chr16                    28082644 1 - 80997621 t
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2129042 1 + 10377808 t
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2016917 1 -  8458610 t
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64963755 1 + 75148670 t
i chlSab2.chr16                    C 0 I 1
s calJac3.chr5_ACFV01180105_random     4639 1 -    12755 t
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1877575 1 +  3513951 t
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e manLeu1.NW_012106252v1            2221143 5508 +  4244037 T
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e colAng1.NW_012122154v1            2220119 12634 +  4569836 I

a score=54047.000000
s hg38.chr17_JH159148v1_alt           59557 16 +    88070 ccttccttccttcctt
s panTro5.chr17                    16364933 16 + 83181570 ccttccttccttcctt
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16275729 16 + 83442489 ccttccttccttcctt
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122531 16 +  4267968 cctgccttccttcctt
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112206 16 -  2193130 cctttctttctctctt
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macFas5.chr16                    28082645 12 - 80997621 ----tctttctttctt
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2129043 12 + 10377808 ----tctttctttctt
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2016918 16 -  8458610 ccttccttccttcctt
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64963757 16 + 75148670 ccttccttccttcctt
i chlSab2.chr16                    I 1 C 0
s calJac3.chr5_ACFV01180105_random     4640 16 -    12755 cctccctcccttcctt
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1877576 16 +  3513951 ccttcttcctttcttc
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e manLeu1.NW_012106252v1            2221143 5508 +  4244037 T
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e colAng1.NW_012122154v1            2220119 12634 +  4569836 I
e rheMac8.chr16                    30172346  4 - 77216781 I

a score=3767.000000
s hg38.chr17_JH159148v1_alt           59573 2 +    88070 cc
s panTro5.chr17                    16364949 2 + 83181570 tc
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16275745 2 + 83442489 cc
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122547 2 +  4267968 cc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112222 2 -  2193130 tc
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s cerAty1.NW_012006043v1            2016934 2 -  8458610 tc
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64963773 2 + 75148670 cc
i chlSab2.chr16                    C 0 I 65
s calJac3.chr5_ACFV01180105_random     4656 2 -    12755 cc
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1877592 2 +  3513951 ct
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e manLeu1.NW_012106252v1            2221143 5508 +  4244037 T
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e colAng1.NW_012122154v1            2220119 12634 +  4569836 I
e macNem1.NW_012014910v1            2129055 0 + 10377808 C
e macFas5.chr16                    28082657 0 - 80997621 C
e rheMac8.chr16                    30172346 4 - 77216781 I

a score=21566.000000
s hg38.chr17_JH159148v1_alt           59575 34 +    88070 c------------------------ctccctcagttcctccccgctccctcctttccc
s panTro5.chr17                    16364951 34 + 83181570 c------------------------ctccctcggttcctccttgctccctcctttccc
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16275747 34 + 83442489 c------------------------ctccctcggttcctccccgctccctcctttccc
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122549 58 +  4267968 ttcgttccttccttccttcctttccctccctcggttcctccctgctccctcctttccc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112224 34 -  2193130 t------------------------ttttctttctttctttctccttccttccttcct
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s cerAty1.NW_012006043v1            2016936 33 -  8458610 ------------------------tttctcttcctccctcctgcctccctctattcc-
i cerAty1.NW_012006043v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random     4658 24 -    12755 ----------------------------------tccttcctttcttcttcctcgctt
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1877594 24 +  3513951 ----------------------------------tccttcctttcttccctccctccc
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e manLeu1.NW_012106252v1            2221143 5508 +  4244037 T
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e colAng1.NW_012122154v1            2220119 12634 +  4569836 I
e chlSab2.chr16                    64963775 65 + 75148670 I
e macNem1.NW_012014910v1            2129055  0 + 10377808 C
e macFas5.chr16                    28082657  0 - 80997621 C
e rheMac8.chr16                    30172346  4 - 77216781 I

a score=13830.000000
s hg38.chr17_JH159148v1_alt           59609 38 +    88070 tccctccctc-cttcctgtccttccttccttccttct----tt------
s panTro5.chr17                    16364985 18 + 83181570 tccc---------tcctgtccgtcc----------------tt------
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16275781 42 + 83442489 tccctccctc-cttcctgtccttccttccttccttctttcctt------
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122607 22 +  4267968 tccc---------tcctgtccgtctttcc------------tt------
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112258 30 -  2193130 ttct---------ctctctctctctttctctctttct----tt------
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macNem1.NW_012014910v1            2129055 33 + 10377808 ----ctcttt-ctttct-ttctttctttctttctttc----tt------
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2016969 36 -  8458610 -ccttccttc-cttcct-tccttccttccttccttcc----tt------
i cerAty1.NW_012006043v1           C 0 C 0
s manLeu1.NW_012106252v1            2215635 37 +  4244037 tccttccttc-cttcct-tccttccgtccttccttcc----tt------
i manLeu1.NW_012106252v1           T 5508 C 0
s calJac3.chr5_ACFV01180105_random     4682 44 -    12755 ttcctctctctctttct-tgcttgctttctctctctt----tctttctt
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1877618 43 +  3513951 tctctccctc-cttcct-ttctttctttctttcttAT----TCTCTCTC
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e colAng1.NW_012122154v1            2220119 12634 +  4569836 I
e chlSab2.chr16                    64963775 65 + 75148670 I
e macFas5.chr16                    28082657  0 - 80997621 C
e rheMac8.chr16                    30172346  4 - 77216781 I

a score=4300.000000
s hg38.chr17_JH159148v1_alt           59647 2 +    88070 cc
s panTro5.chr17                    16365003 2 + 83181570 cc
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16275823 2 + 83442489 cc
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122629 2 +  4267968 cc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112288 2 -  2193130 ct
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macNem1.NW_012014910v1            2129088 2 + 10377808 tc
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2017005 2 -  8458610 cc
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64963840 2 + 75148670 tt
i chlSab2.chr16                    I 65 C 0
s manLeu1.NW_012106252v1            2215672 2 +  4244037 cc
i manLeu1.NW_012106252v1           C 0 I 5525
s calJac3.chr5_ACFV01180105_random     4726 2 -    12755 cc
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1877661 2 +  3513951 GC
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e colAng1.NW_012122154v1            2220119 12634 +  4569836 I
e macFas5.chr16                    28082657 0 - 80997621 C
e rheMac8.chr16                    30172346 4 - 77216781 I

a score=61644.000000
s hg38.chr17_JH159148v1_alt           59649 14 +    88070 t-tccttccttctct
s panTro5.chr17                    16365005 14 + 83181570 t-tccttccttctct
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16275825 14 + 83442489 t-tccttccttctct
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122631 14 +  4267968 t-tccttccttctct
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112290 14 -  2193130 t-tccttccttcctt
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s macNem1.NW_012014910v1            2129090 14 + 10377808 t-ttctttctttctt
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2017007 14 -  8458610 t-tccttccttcctt
i cerAty1.NW_012006043v1           C 0 I 2
s chlSab2.chr16                    64963842 14 + 75148670 t-tccttccttccct
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2221199 14 +  4244037 t-tccttccttccct
i manLeu1.NW_012106252v1           I 5525 C 0
s colAng1.NW_012122154v1            2232753 14 +  4569836 t-tccttccttccct
i colAng1.NW_012122154v1           I 12634 C 0
s calJac3.chr5_ACFV01180105_random     4728 14 -    12755 t-tttttctctctct
i calJac3.chr5_ACFV01180105_random C 0 I 5700
s saiBol1.JH378271                  1877663 15 +  3513951 TCTCTTTCTTCCTCT
i saiBol1.JH378271                 C 0 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macFas5.chr16                    28082657  0 - 80997621 C
e rheMac8.chr16                    30172346  4 - 77216781 I

a score=18342.000000
s hg38.chr17_JH159148v1_alt           59663 9 +    88070 ctgtctttc
s panTro5.chr17                    16365019 9 + 83181570 ctgtctttc
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16275839 9 + 83442489 ctgtctttc
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122645 9 +  4267968 ctgtctttc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112304 8 -  2193130 ctttc-ttc
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s cerAty1.NW_012006043v1            2017023 9 -  8458610 ctctcattc
i cerAty1.NW_012006043v1           I 2 C 0
s chlSab2.chr16                    64963856 9 + 75148670 ctgttgttc
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2221213 9 +  4244037 ctgttgttc
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2232767 9 +  4569836 ctgttgttc
i colAng1.NW_012122154v1           C 0 C 0
s saiBol1.JH378271                  1877678 9 +  3513951 GTATTTTTT
i saiBol1.JH378271                 C 0 I 2
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e calJac3.chr5_ACFV01180105_random     4742 5700 -    12755 I
e macNem1.NW_012014910v1            2129104 0 + 10377808 C
e macFas5.chr16                    28082657 0 - 80997621 C
e rheMac8.chr16                    30172346 4 - 77216781 I

a score=50373.000000
s hg38.chr17_JH159148v1_alt           59672 13 +    88070 tgtttttctttcc
s panTro5.chr17                    16365028 13 + 83181570 tgtttttctttcc
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16275848 13 + 83442489 tgtttttctttcc
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122654 13 +  4267968 tgtttttctttcc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112312 13 -  2193130 tttctttcttcct
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s cerAty1.NW_012006043v1            2017032 13 -  8458610 tgtttttctttct
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64963865 13 + 75148670 tgtttttctttct
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2221222 13 +  4244037 tgtttttctttct
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2232776 13 +  4569836 tgtttttctttct
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    10442 13 -    12755 tgttctcatttct
i calJac3.chr5_ACFV01180105_random I 5700 C 0
s saiBol1.JH378271                  1877689 13 +  3513951 TGTTCTCATTTCT
i saiBol1.JH378271                 I 2 C 0
e aotNan1.NW_018505111v1              12383 1099 -    94492 I
e cebCap1.NW_016107543v1              18461 1197 -  4077172 I
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macNem1.NW_012014910v1            2129104  0 + 10377808 C
e macFas5.chr16                    28082657  0 - 80997621 C
e rheMac8.chr16                    30172346  4 - 77216781 I

a score=18713.000000
s hg38.chr17_JH159148v1_alt           59685 14 +    88070 ttctt--ttctctttc
s panTro5.chr17                    16365041 14 + 83181570 ctctt--ttctctttc
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16275861 14 + 83442489 ttctt--ttctctttc
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122667 14 +  4267968 ttctt--ttctctatc
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112325 10 -  2193130 tcctt--ttgtc----
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s cerAty1.NW_012006043v1            2017045 10 -  8458610 tttct--ctttc----
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64963878 10 + 75148670 ttcat--ctttc----
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2221235 10 +  4244037 ttcgt--ctttc----
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2232789 10 +  4569836 tccgt--ctttc----
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    10455 16 -    12755 ttcttAGTTTTcttct
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1877702 16 +  3513951 TTCTTAGTTtttttct
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              19658 14 -  4077172 ttctt--ttgtctttc
i cebCap1.NW_016107543v1           I 1197 C 0
s aotNan1.NW_018505111v1              13482 14 -    94492 ttctt--ttccctttc
i aotNan1.NW_018505111v1           I 1099 C 0
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macNem1.NW_012014910v1            2129104  0 + 10377808 C
e macFas5.chr16                    28082657  0 - 80997621 C
e rheMac8.chr16                    30172346  4 - 77216781 I

a score=19994.000000
s hg38.chr17_JH159148v1_alt           59699 3 +    88070 ctt
s panTro5.chr17                    16365055 3 + 83181570 ctt
i panTro5.chr17                    C 0 I 5483
s panPan2.chr17                    16275875 3 + 83442489 ctt
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122681 3 +  4267968 ctt
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30172350 3 - 77216781 ctc
i rheMac8.chr16                    I 4 C 0
s macFas5.chr16                    28082657 3 - 80997621 ctc
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2129104 3 + 10377808 ctc
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2017055 3 -  8458610 ctt
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64963888 3 + 75148670 ctc
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2221245 3 +  4244037 ctc
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2232799 3 +  4569836 ctc
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    10471 3 -    12755 cct
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1877718 3 +  3513951 cct
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              19672 3 -  4077172 ctt
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              13496 3 -    94492 ctt
i aotNan1.NW_018505111v1           C 0 C 0
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e nomLeu3.chrUn_GL397460_1          2112335 0 -  2193130 C

a score=1055014.000000
s hg38.chr17_JH159148v1_alt           59702 130 +    88070 cTCCTCTCATCTTCTGTCCCTtctcttcctctgcttcctctcttcctcttcttcctTCTCCTAGAGGTTGTGGCTGCCCATCCTATTTAAGTAGCAAATATTTGACTTGAGTGGAGCTAATTGTAGATTG
s panTro5.chr17                    16370541 130 + 83181570 ctccactcatcttctgtcccttctcttactcctctttctcacctcctcttcttccttcttctAGATCTTGTGGCTGTCCATCACATTTAAGTAGCAAAGGTTTTACTTGAGTGGAGCTAATTGTAGATCA
i panTro5.chr17                    I 5483 C 0
s panPan2.chr17                    16275878 130 + 83442489 ctcctctcatcctctgtcccttctcttcctctgctttctctcttcctcttcttccttcTCCTAGAGCTTGTGGCTGCCCATCCTATTTAAGTAGCAAATATTTGACTTGAGTGGAGTTAATTGTAGATTG
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122684 127 +  4267968 ---ctctcatcttctgtcccttctcttcctctgcttcctctcttcctcttcttctttcTCCTAGAGCTTGTGGCTGTCCATCCTATTTAAGTAGCAAATATTTGACTTGAGTAGAGCTAGTTGTAGATCG
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112335 130 -  2193130 ctccactcatcttctgtcccttctcttactcctctttctcaccttctcttcttccttcttCTAGAGCTTGTGGCTGTCCATCACATTTAAGTAGCAAAGGTTTTACTTGAGTGGAGCTAATTGTATATCG
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30172353 127 - 77216781 ctccactcatcttctgtcccttctcttactcctctttctcacctcctcttcttc---cttctAGAGCTTGTGGCTGTCCATCACATTTAAGTAGCAAAGATTTGACTTGAGTGGAGCTAATTGTGGATCG
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28082660 130 - 80997621 ctccactcatcttctgtcccttctcttactcctctttctcacctcctcttcttccttcttCTAGAGCTTGTGGCTGTCCATCACATTTAAGTAGCAAAGATTTGACTTGAGTGGAGCTAATTGTGGATCG
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2129107 130 + 10377808 ctccactcatcttctgtcccttctcttactcctctttctcacctcctcttcttccttcttctAGAGCTTGTGGCTGTCCATCACATTTAAGTAGCAAAGATTTGACTTGAGTGGAGCTAATTGTGGTTCG
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2017058 130 -  8458610 ctcctcttatcttctttcccttctctttttcagcttcctctcttcctcttcttccttcTCATAGAGCTTGTGGCTGTTCATCGTATTTAAGTAGCAAATATTTGACTTGAGTGGAGCTAATTGTAGATCG
i cerAty1.NW_012006043v1           C 0 I 13322
s chlSab2.chr16                    64963891 129 + 75148670 ctcctctcatcttctgtcccttcccttcctccgcttcctctcttcctcttcttccttcttCTAGAGCTTGTGGCTGTCCATCGTATTTAAGTAGC-AATATTTGACTTGAGTGGAGCTAATTGTAGGTCA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2221248 129 +  4244037 ctcttctcatcttctgtcccttcccttcctccacttcctctcttcctcttcttccttCTCCTAGAGCTTGTGGCTGTCCATCGTATTTAAGTAGC-AATATTTGACTTGAGTGGAGCTAATTGTAGGTCA
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2232802 129 +  4569836 cacttctcatcttctgtcccttcccttcctccacttcctctcttcctcttcttccttCTCCTAGAACTTGTGGCTGTCCATCGTATTTAAGTAGC-AATATTTGACGTGAGTGGAGCTAACTGTAGGTCA
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    10474 116 -    12755 ---ctctca---------ccttctgttcctcctcttc--ctcctccttttcctctttcttctAAGGTTCATGATTGTCCACCACATTTAAGAAGCAAAGATTGGATATGAGTGGAGCAAATGATAGATCA
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1877721 116 +  3513951 ---ctctca---------ccttctgtttctcctcttc--ctcctccttttcctctttcttctAAGGTTCATGATTGTCCACCAAATTTAAGAAGCAAAGATTGGATTTGAGTGGAGCAAATGGTAGATCA
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              19675 127 -  4077172 ---ctctcatcttctatcccttctctttctcctcttcctctcctcctctttttccttcttCTAGAGTTTGTGGCTGTGCATGACATTTAAGCAGCAAAGATTTGACTTGAGTGGAGCTAATTGTAGGTTG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              13499 130 -    94492 ctcctcccatcttctgtcccttctctttctcctcttcctctccttctctttttccttcttCTAGAGCTTGTGGTTGTCCATGACATTTAAGTAGCAAATATCTGACTTGAGTGGAGCTAATTGTAGATTG
i aotNan1.NW_018505111v1           C 0 C 0
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=4319535.000000
s hg38.chr17_JH159148v1_alt           59832 498 +    88070 TAGACAAGTTTTCATGACTGCACCCATATATCTTGGATGTTACTGTGCTTggatcaatttccatctgtcaaaatctgcatctctgtgcctaagggctcttgtattgcagctgtagaaagtcatgccacctgtgaatgcaacacagagaaaaacactcaaccaatgattctggagagctgatttataaagactttagcttcctcattcctgaagtagggtaattctag-ctgtgtg-tttttcatcatttctgatagttttccctttagtttaagctttagttggtgactgtgatactgacttaatagtgtgccttcttctgtatcacttccccagtccctaccggtgtgatctgcacttctcagtaaactagtttccctggaatattttcttcaaagtctcttctgggagaaactaatctatgacaATACGttaactctctcagcctcaaatttctcatctctacaaggggaacattaatacctattttgaaagtttgtt
s panTro5.chr17                    16370671 498 + 83181570 TAGGTAAGTTTTCATGACTGCACCCATATATATTAGatcttagtgtgcttggactaatttccatctgttagaatctgcatctctgtgcctaagagctcttgtattgctgctgtaagaagtcatgtcacctgtgaatgcaacacagagaaaaactctcaaccaatgattctggagagctgatttataaagactctagcttcctcattcctgaagtaggataactctag-ctgtgtgtttttttgtcatttctgatagttttccctttagtttaagctttagttggtgactgtgatactgacttgatagtgtacccttttctgtatcacttccccaat-cctaccagtgtgatctgcacttccgaataaactagtttcactggaacgctttcctcagagtctcttctgggagaaactaatctatgacaATACACTAActctctcagcctcaattttttcatctctacaaagggaacattaatacctgttttgaaagtttgtt
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16276008 497 + 83442489 TAGACAAGTTTTCATGACTGCACCCATATATCTTGGATGTTACTGTGCTTggatcaatttccatctgtcaaaatctgcatctctgtgcctaagggttcttgtattgcagctgtggaaagtcatgccacctgtgaatgcaacacagagaaaaacactcaaccaatgattctggagagctgatttataaagactttagcttcctcattcctgaagtagggtaattctag-ctgtgtg-tttttcatcatttctgatagttttccctttagtttaagctttagttggtgactgtgatactgacttaatagtgtgccttcttctgtatcacttctccaatccctaccggtgtgatctgcacttcccagtaaactagtttccttggaatcttttcttcaaagtctcttctgggagaaactaatctatgacaATATGttaactctctcagcctcaaatttctcatctcta-aaggggaacattattacctattttgaaagtttgtt
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4122811 493 +  4267968 TAGACAAATTTTCATGACTGCACCCATATATCTTGGatgttagtgtgcttggatcaatttctatctgtcaaaatctgcatctctgtgcctaagggctcttgtgttgcagctgcagaaagtcatgccacctgtgaatgcaacacagagaaaaacactcaaccaatgattctggagagctgatttataaagactctagcttcctcattcctgaagtaggataattccac-ctatgtg-tttttcatcatttctgataattttcactttagtttaagctttagttggtgactgtgatactgacttaatagtgtacccttttctgtatcacttccccagtccctaccagtatgatctgcacttcccagtaaactagtttcactggaat-tttttttcagagtctcttctgggagaaactcatctatgacTATACGTTAA----ctcagcctcaaatttctcatctctacaaggggaacattaatacctattttgaaagtttgtt
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112465 498 -  2193130 TAGATAACTCTTCATGACTGCACCCATATATATTAGatcttagtgtgcttggactaatttccttctgttagaatctgcatctctgtgcctaagggctcttgtattgctgctgtaagaagtcatgtcacctgtgaatgcaacacagagaaaaacactcaaccaatgattctggagagctgatttataaagactctagcttcctcattcctgaagtaggataattctag-ctgggtg-tatttcgtcatttctgataattttccctttagtttaagctttagctggtgactgtgatactgacttgatagtgtacccttttctgtatcacttctccaatccctaccagtgtgatctgcacttcccagtaaactagtttcactggaatgctttcctcagagtctcttctgggagaaactaatctatgacaATACCCCAActctctcaccctcaattttctcatctccacaaagggaatattaatatctattttgaaagtttgtt
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30172480 496 - 77216781 TAGACAAGTTTTCATGACTGCATCCATATATATTAGATCGTAGTGTGCTTggactaatttccatctgttagactctgcatcactgtgcctaagggctcttgtattgctgctgtaagaagtcatgtcacctgggaaggcaacacagagaaaaacactcaaccaatgattctggagagctgatgtataaaga--ctagcttcctcattcctgaagtaggataattctag-ctgtgtg-tttttcatcatttctgataattttccctttagtttaagctttagttggtgactgtgatactgacttaatagtgaacccctttctgtatcacttccccaatccctaccaatgtgatctgcacttcccagtaaactgctttcactagaatctttttttcagagtctcttctgggagaaactaatctatgacaATACACTAActctcgcagcctcgattttctcatctctacaaagggaacgttaatacctattttgaaagtttgtt
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28082790 496 - 80997621 TAGACAAGTTTTCATGACTGCATCCATATATATTAGATCGTAGTGTGCTTGGACTAATTTCCATCTGTTAGACTCTGCATCACTGTGCCTAAGGGCTCTTGTATTGCTGCTGTAAGAAGTCATGTCACCTGGGAAGGCAACACAgagaaaaacactcaaccaatgattctggagagctgatgtataaaga--ctagcttcctcattcctgaagtaggataattctag-ctgtgtg-tttttcatcatttctgataattttccctttagtttaagctttagttggtgactgtgatactgacttaatagtgaacccttttctgtatcacttccccaatccctaccaatgtgatctgcacttcccagtaaactgctttcactagaatctttttttcagagtctcttctgggagaaactaatctatgacaATACACTAActctctcagcctcgattttctcatctctacaaagggaacgttaatacctattttgaaagtttgtt
i macFas5.chr16                    C 0 I 313
s macNem1.NW_012014910v1            2129237 496 + 10377808 TAGACAAGTTTTCATGACTGCATCCATATATATTAGATCGTAGTGTGCTTGGACTAATTTCCATCTGTTAGACTCTGCATCACTGTGCCTAAGGGCTCTTGTATTGCTGCTGTAAGAAGTCATGTCACCTGGGAAGGCAACACAgagaaaaacactcaaccaatgattctggagagctgatgtataaaga--ctagcttcctcattcctgaagtaggataattctag-ctgtgtg-tttttcatcatttctgataattttccctttagtttaagctttagttggtgactgtgatactgacttaatagtgaacccttttctgtatcacttccccaatccctaccaatgtgatctgcacttcccagtaaactactttcactggaatctttttttcagagtctcttctgggagaaactaatctatgacaATACACTAActctctcagcctcgattttgtcatctctacaaagggaacgttaatacctattttgaaagtttgtt
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2030510 498 -  8458610 TAGACAAGTTTTCATGACTGCACCCATATATCTTGGATATTAATGTGCTTGGATTAATTTCCATCTGTCAAAATCTGCATCTCTGTGCCTAAGGGCTCTTGTATTGCAGCTGTAGAAAGTCATGCCACCTATGAATGCAACACAGAGAAAAACACTCAACCAGTGATTCTGGACAGCTGATTTATAAAGACTCTAGCTTCCTCATTCCTGAAGTAGGATAATTCTAG-CTGTGTG-TTTTTCATCATTTCTGATAATTTTCCCTTTAACGTAAGCTTCAGTTGGTGACTGTGATACTGACTTAATAGTGAAcccttttctgtgtcacttccccaatccctaccagtgtgatctgcgcttcccagtaaactactttcactggaatctttttttcagagtctcttctatgagaaactaatctatgacaATACGTTCATtctctcagcctcaaatttctcgcctctacaaagggaacattaatacctattttgaaagtttgtt
i cerAty1.NW_012006043v1           I 13322 C 0
s chlSab2.chr16                    64964020 498 + 75148670 TAGACAAGTTTTCATGACTGCACCCATATATCTTGGATATTAGTGTGCTTGGATTAATTTCCATCTGTCAGAGTCTGCATCTCTGTGCCTAAGGGCTCTTGTATTGCACCTGTAGAAAGTCATGTCACCTGTGAATGCAACACAGAGGAAAACActcaaccaacaattctggagagctgatttataaagactctagcttcctcattcctgaagtaggataattctag-ctgtgtg-tttttcatcatttctgataattttccctgtaacataagtttcagttggtgactgtgatactgacttaatagtgaacccttttctgtgtcacttccccactccctaccagtgtgatctgcacttcccagtaaactactttcactggaatcttttcttcagagtctcttctatgagaaactaatctatgacaATACGTTCActctctcagcctcaaatttctcatctctacaaagggaacattaatacctattttgaaagtttgtt
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2221377 496 +  4244037 TAGACAGGTTTTCATGACTGCACCCATATATCTTGGATATTAATGTGCTTGGATTAATTTCCATCAGTCAAAATCTGCATCTCTGTGCCTAAGGGCTCTTGTATTGCAGCTGTAGAAAGTCATGCCACCTGTGAATGCAACACAGAGG-AAACACTCAACCAGTGATTCTGGAGAGCTGATTTATAAAGACTCTAGCTTCCTCATTCCTGAAGAAGGATAATTCTAG-CTGTGTG-TTTTTCATCATTTCTGATAATTTTCCCTTTAACATAAGCTTTAGTTGGTGACTGTGATACTGACTTAATAGTGAActcttttctgtatcactt-cccaatccctaccagtgtgatctgcacttcccagtaaactactttcactagaacctttttttctgagtctcttctatgagaaactaatctatgacaATACGATAActctctcagcttcaaatttctaatccctacaaagggaacattaatacctattttgaaagtttgtt
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2232931 495 +  4569836 TAGACAAGTTTTCATGACTGCACCCATATATCTTGGCTATTAGTGTGCTTGGATTAATTTCTGTCCATCAAAATCTGCATCTCTGTGCCTAAGGGCTCTTGCATTGCAGCTGTAGAAAGTCATGCCACCTGTG-ATGCAACGCAGGGGAAACCACTCAACCAGTGATTCTGGAGAGCTGATTTATAAAGACTCTAGCTTCTTCATTCCTGAAGTAGGATAATTCTAG-CTGTGTG-TTTTTCATCATTTCTGATAATTTTCCCTTTAACATAAGCTTCAGTTGGTGACAGTGATACTGACTTAATAGTGAACAc-tttccgtatcacttccccaatccctaccagtgtgatctgcac-taccagtaaactactttcactggaatctttttttcagagtctcttttgtgataaactaatctatgacaATATGttaactctctcagcctcaaatttctcatctctacaaagggaacattaatacctactttgaaaatttgtt
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    10590 487 -    12755 CAGACTGGTCTTCATTACCACACCTGTTTATCATGAAACCTAGTGTGCTCAGACCAATTTCCATCTGTCAGAATCTGCATCTCTGTCCCTTAGGGCTATTGTATTGCAAATACAGAAAGTCACGTCACCTGTACATGCTAGAGGgagaaaagcattcaactaatgactct-gagaatggatttatgaagactccagctttctcattcctgaagtaggacaattctaatttgtgtg-tttttcatcatttctgataaatttccctttagcttaagcttcagttgatctctgtcatggtggcttcatagcctaccctttTCTGTATCAGTTCCATAATCCCTCCCGGTGTGATCTGCACTTCCTGATACAC-----GCTTTGGAACCTTTCTCTCAGACTGTCTTCTGAGA------AAACTACGACAttacattacttctcttagcctcgatttcctcatgtctatgtttggaacactaatgactattttgaaagtttgtt
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1877837 496 +  3513951 TAGACTGGTCTTCATTACCACACCTGTTTATCATGAAACCTagtgtgctcggaccaattttcatctgccagcatctgcttctctgtcccttagggctctTGTATTGCAAATACAGAAAGTTATGTCACCTGTACATGCTAGAGGGAGAAAAATATTCAACTAATGATTCTGGAGAGTGGATTTATGAAGACTCCAGCTTTCTCATTCCTGAAGTAGGACAATTCTGATTTGTGTG-TTTTTCATCATTTCTGATAAATTTCCCTTTAGCTTAAGCTTCAGTCGATCTCTGTCATGCTGACATCATAGTCTACCCTTTTCTGTATCACTTCCATAATCCCTCCTGGTGCGATCTGCACTTCCTGATACACTACATGCATTGGAACCTTTTTCTCAGAGTATCTTCTGAGAAAAACCAAACTATGACAttacattacttctcttagcctcagtttcctcatgtctatgtttggaacactaatgcctgttttgaaagttt---
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              19802 498 -  4077172 TAGAAAAGTTTTCATGACTGCACCCATATAACTTGGATCTTATTGTGCTTggactaatttccatctgccagaatctgcatctctgtgcctaaggactcttgaattgcagctgtagaaagccatgttacctgtgcatgacacacacagaaaaacactcaaccaatgattctggagtgctgatttatgaagactgtagcttcctcattcctgaagtaggataattctag-ctgtgtc-tttttcatcatctctgatagttttccctttagtttaagctttagttggtcagcgtgatactggcttaatagtgtaccattttctgtatcacttcctcaatccctaccagtgtaaactgcacttcccaatgaactactttcactagaatcttttcctcagtgtctcttctgagagaaactaaactacgacaTTGTGttaactctcttagcctcagttgtctcatctctacgatgagaacattaatacctattttgaaagtttgct
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              13629 493 -    94492 TAGAAAAGTTTTCATGACTGCACCCATATAACTTGGatcttagtgtgcttggactaatttccatctgccagaatctgcatctctgtgcctaaggactcttgtattgcagctgtagaaagtcatgtcacctgtgcatgacacacagagaaaaacactcaaccaatgattctggagtgctgatttatgaagactctagcttcctcattcctgaagtaggataattctag-ctgtgtc-ttttccatcatttctgatagttttctct-----ttaagctttagctggtcactgtgatactggcttaatagtgtaccattttctgtatcacttccccaatccctaccagtgtaatctgcacttcctaataaactactttcgctagaatcttttcctcagtgtatcttctgagagaaactaaactatgacaTTGTGttaactgtcttagcctcagttgtctcatctgtaccatgagaacattaatacctattttgaaagtttgct
i aotNan1.NW_018505111v1           C 0 C 0
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=44446.000000
s hg38.chr17_JH159148v1_alt           60330 6 +    88070 aaatag
s panTro5.chr17                    16371169 6 + 83181570 aaagaa
i panTro5.chr17                    C 0 I 308
s panPan2.chr17                    16276505 6 + 83442489 aaatag
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4123304 6 +  4267968 aaatag
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112963 6 -  2193130 aaagaa
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30172976 6 - 77216781 aaagaa
i rheMac8.chr16                    C 0 I 313
s macFas5.chr16                    28083599 6 - 80997621 AAAGAA
i macFas5.chr16                    I 313 C 0
s macNem1.NW_012014910v1            2129733 6 + 10377808 aaagaa
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2031008 6 -  8458610 aaagag
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64964518 6 + 75148670 aaagag
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2221873 6 +  4244037 aaagag
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2233426 6 +  4569836 aaagag
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    11077 6 -    12755 caagaa
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1878333 5 +  3513951 -aagaa
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              20300 6 -  4077172 aaaaaa
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14122 6 -    94492 aaagaa
i aotNan1.NW_018505111v1           C 0 C 0
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=31470.000000
s hg38.chr17_JH159148v1_alt           60336 7 +    88070 ttaataa
s panTro5.chr17                    16371483 7 + 83181570 ttaataa
i panTro5.chr17                    I 308 C 0
s panPan2.chr17                    16276511 7 + 83442489 ttaataa
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4123310 7 +  4267968 ttaataa
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2112969 7 -  2193130 ttaataa
i nomLeu3.chrUn_GL397460_1         C 0 I 305
s rheMac8.chr16                    30173295 7 - 77216781 TTAATAA
i rheMac8.chr16                    I 313 C 0
s macFas5.chr16                    28083605 7 - 80997621 TTAATAA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2129739 7 + 10377808 ttaGTAA
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2031014 7 -  8458610 ttaataa
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64964524 7 + 75148670 ttaatag
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2221879 7 +  4244037 ttaatag
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2233432 7 +  4569836 ttcacaa
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    11083 7 -    12755 ttaatga
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1878338 7 +  3513951 ttaatca
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              20306 1 -  4077172 t------
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14128 1 -    94492 t------
i aotNan1.NW_018505111v1           C 0 C 0
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=21840.000000
s hg38.chr17_JH159148v1_alt           60343 2 +    88070 ta
s panTro5.chr17                    16371490 2 + 83181570 ta
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16276518 2 + 83442489 ta
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4123317 2 +  4267968 ta
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2113281 2 -  2193130 ta
i nomLeu3.chrUn_GL397460_1         I 305 C 0
s rheMac8.chr16                    30173302 2 - 77216781 TA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28083612 2 - 80997621 TA
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2129746 2 + 10377808 TA
i macNem1.NW_012014910v1           C 0 I 299
s cerAty1.NW_012006043v1            2031021 2 -  8458610 ta
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64964531 2 + 75148670 ta
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2221886 2 +  4244037 ta
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2233439 2 +  4569836 ta
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    11090 2 -    12755 ta
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1878345 2 +  3513951 ta
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              20307 2 -  4077172 ta
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14129 2 -    94492 ta
i aotNan1.NW_018505111v1           C 0 C 0
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=69994.000000
s hg38.chr17_JH159148v1_alt           60345 8 +    88070 atgtacac
s panTro5.chr17                    16371492 8 + 83181570 atgtacac
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16276520 8 + 83442489 atgtacac
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4123319 8 +  4267968 atgtacac
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2113283 8 -  2193130 atgtacac
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30173304 8 - 77216781 ATGTACAC
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28083614 8 - 80997621 ATGTACAC
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2031023 8 -  8458610 aggtacac
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64964533 8 + 75148670 atgtacac
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2221888 8 +  4244037 atgtacac
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2233441 8 +  4569836 atgtacac
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    11092 8 -    12755 atgtacat
i calJac3.chr5_ACFV01180105_random C 0 C 0
s saiBol1.JH378271                  1878347 8 +  3513951 atgtacat
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              20309 8 -  4077172 atgtacac
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14131 8 -    94492 ttgtacac
i aotNan1.NW_018505111v1           C 0 C 0
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I
e macNem1.NW_012014910v1            2129748 299 + 10377808 I

a score=954561.000000
s hg38.chr17_JH159148v1_alt           60353 138 +    88070 aaagcatttatccagtacccatcatagagcaggcAACACAGA----ATTAGTG-TTTTTTGTTCAGAAAATTC-----CCAAGTTTTATGTTGAAGATAAGAATATTTTTGTAATAATTAAATAGATCAACTAAATACGTTtttttct--
s panTro5.chr17                    16371500 134 + 83181570 aaagcatttagccaatatgtctcctatagcaggcagcccaGA----ATTAGTG-TTTTT-GTTCAGAAAATTT-----CTAATTTTAATGTTGAAGATAAGAATATTTTTGTAATAATTAACCAGATCAACCAAATAC---tttttcg--
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16276528 136 + 83442489 aaagcatttagccaatacccatcacatagcaggcAACACAGA----ATTAGTG-ATTTTTGTTCAGAAAATTT-----CTAATGTTAATGTTGAAGATAAGAATATTTTTGTAATAATTAACTAGATCAACTAAATAC--Ttttttca--
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4123327 137 +  4267968 aaagcatttatccagtacccatcatagagcaggcAACACAGA----ATTAGTG-ATTTTTGTTCAGAAAATTC-----CCAAGTTTTATGTTGAAGATAAGAATATTTTTGTAATAATTAAATAGATCAACTAAATAC-GTtttttct--
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2113291 134 -  2193130 aaagcatttaTCCAATATGTCTCCTATAGCAGGCAGCCCGGA----ATTAGTG-ATTTT-GTTCAGAAAATTT-----CTAACTTTAATGTTGAAGATAAGAATATTTTTGTAATAATTAACTAGATCAACTAAATAC---ttttcct--
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30173312 129 - 77216781 AAAGCCTTTAGCCAATACCCATCCTATGGTAGGCAGCCCAGA----ATTAGTG--TTTTTGTTCAGAAAATTT-----CTAATTTTCATGTTGAAGA-----ATATTTTTGTAATAATTAACTAAATCAACTAAATAC---tttttct--
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28083622 129 - 80997621 AAAGCCTTTAGCCAATACCCATCCTATGGTAGGCAGCCCAGA----ATTAGTG--TTTTTGTTCAGAAAATTT-----CTAATTTTCATGTTGAAGA-----ATATTTTTGTAATAATTAACTAAATCAACTAAATAC---tttttct--
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2130047 129 + 10377808 aaaGCCTTTAGCCAATACCCATCCTATGGTAGGCAGCCCAGA----ATTAGTG--TTTTTGTTCAGAAAATTT-----CTAATTTTCATGTTGAAGA-----ATATTTTTGTAATAATTAACTAAATCAACTAAATAC---tttttct--
i macNem1.NW_012014910v1           I 299 C 0
s cerAty1.NW_012006043v1            2031031 136 -  8458610 aaagcacttagccaatacccatcagatagcaggcatcccaga----attagtG-TTTTTTGTTCAGCAAATTC-----CTAATTTTCATGTTGAAGATAAG-AATTTTTTGTAATAATTAACTAGATCAACTAAATACA-Ttttttct--
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64964541 135 + 75148670 aaagcacttagccaata-ccatcatatagcaggcatcccaga----attagtg---ttttgttCAGAAAATTC-----CTAATTTTAATGTTGAAGATAAGAATATTTTTGTAATAATTAACTAGATCAACTAAATACATTtttttct--
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2221896 138 +  4244037 aaaacatttagccaatacccatcagatagcaggcatcccaga----attagtG-TTTTTTGTTCAGAAAATTC-----CTAATTTTAACGTTGAAGGTAAGAATATTTTTGTAATAATTAACTAGATCAACTAAATACATTtttttct--
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2233449 139 +  4569836 aaagcatttagccaatacccatcatatagcaggcatcccaga----attggtgtttttttgttCAGAAAATTC-----CTAATTTTCATGTTGAAGGTTAGAATATTTTTGTAATAATTAACTAGATCAACTAAATACATTtttttct--
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    11100 144 -    12755 aaaagatttagtcaatatccatcaaataataggcaactgaaaacatattagttcGTTTCTGTCCAGAAAATTCCTAAACTAATTTTAATGTTGATGATAAGAATATGTTTATAATAAATAACTAGATAAACTA---AC---TTTttttct
i calJac3.chr5_ACFV01180105_random C 0 I 4
s saiBol1.JH378271                  1878355 144 +  3513951 aaaagatttagtcaatatccatcagataataggcaactgaaaacatattagttcttttCTATCTAGAAAATTCCTAAACTAATTTTAATATTGATGATAAGAATATGTTTATAACAAATAACTAGGTCAACTA---AC---tttttttct
i saiBol1.JH378271                 C 0 T 5849
s cebCap1.NW_016107543v1              20317 140 -  4077172 aaagcatttagcaAATATGCATCATAGTGTAGGCAACCCAGAATATATTCGTG-TTTTTTGTTCAGAAAATTC-----CTAATTTCAATGTTGAAGATAAGGATATTTTTATAATAGTTAAC-AGATCAACTAAATAC---TTttttcct
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14139 138 -    94492 aaagcatttagaaaatacgcatcatagaataggcaacccagaatatattggtG-TTTTTTGTTCAGAAAATTC-----CTAATTTTAATGTTGAAGATAAGAATATTTTTATAATAATTAAG-AGATCAACTAAATAC---tttttct--
i aotNan1.NW_018505111v1           C 0 C 0
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=53334.000000
s hg38.chr17_JH159148v1_alt           60491 6 +    88070 agctgt
s panTro5.chr17                    16371634 6 + 83181570 agctgt
i panTro5.chr17                    C 0 C 0
s panPan2.chr17                    16276664 6 + 83442489 aagtgt
i panPan2.chr17                    C 0 C 0
s gorGor5.CYUI01015385v1            4123464 6 +  4267968 agctgt
i gorGor5.CYUI01015385v1           C 0 C 0
s nomLeu3.chrUn_GL397460_1          2113425 6 -  2193130 agcagt
i nomLeu3.chrUn_GL397460_1         C 0 C 0
s rheMac8.chr16                    30173441 6 - 77216781 agctgt
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28083751 6 - 80997621 agctgt
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2130176 6 + 10377808 agctgt
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2031167 6 -  8458610 agctgt
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64964676 6 + 75148670 agctgt
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2222034 6 +  4244037 agctgt
i manLeu1.NW_012106252v1           C 0 C 0
s colAng1.NW_012122154v1            2233588 6 +  4569836 agctgt
i colAng1.NW_012122154v1           C 0 C 0
s calJac3.chr5_ACFV01180105_random    11248 6 -    12755 agttgt
i calJac3.chr5_ACFV01180105_random I 4 N 0
s saiBol1.JH378271                  1872650 6 +  3513951 agcttt
i saiBol1.JH378271                 T 5849 C 0
s cebCap1.NW_016107543v1              20457 6 -  4077172 agctat
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              14277 6 -    94492 agctgt
i aotNan1.NW_018505111v1           C 0 C 0
e dasNov3.JH570468                   626574 3664 -   852752 I
e otoGar3.GL873537                 22862032 5356 + 28711273 I

a score=1616147.000000
s hg38.chr17_JH159148v1_alt    60497 219 +    88070 attgaggtataattgac--aaacaaaaa-ttgtgtacatttcaggtatagaaggtgatgctct--gatatatatattgattgtga----ataacatatttattaggtcacttagttaccatttcctttttatttttctggtgtgaacatttaagatctaccttctcagtaaatttcaggtatatgataaagtgttttta---actatagtcatattactgtacattagacc
s panTro5.chr17             16371640 219 + 83181570 attgaggtataattgac--aaataaaaa-ttgtgtctatttcaggtatagaaggtgatgctct--aatatatatatccattgtga----ataacatgtttattagcccacgtagttaccatttcctttttatttttgtggtgtgaacatacaagatctaacctcttggcaaatttcaggtgtatgatacagtgtttaca---actatagtgacactactgtacagtagaca
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16276670 220 + 83442489 gcttacgtaaaattgac--aaataaaaatttgtgtatatttcaggtatacaacatgatgctct--gatatatatattcattgtga----ataacatatttattaggtcacttagttaccatttcctttttatttttctggtgtgaacatttaagatctaccttctcagtaaatttcaggtatatgataaagtgttttta---actatagtcatattactgtacattagacc
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4123470 219 +  4267968 attgaggtataattgac--aaacaaaaa-ttgtgtacatttcaggtatacaaggtgatgctct--gatatatatattcattgtga----ataacatatttattaggtcacttagttaccatttcctttttatttttctggtgtgagcatttaagatctaccttctcagtaaatttcaagtatatgataaagtgttttta---actatagtcatattactgtgcattagacc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2113431 219 -  2193130 attgaggtgtaattgac--aaataaaaa-ttgtgtctgtttcaggtatacaaggtgatgctct--aatgtatgtatccattgtga----ataacatatttattagcacacgtagttaccatttcctttttatttttgttgtgtgaacatataagatctaacttcttggcaaatttcaggtatatgataaagtgtttata---actatagtgatattactgtacattagaca
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30173447 219 - 77216781 attgaggtgtaattaac--aaataaaaa-ttgtgtctatttcaggtatgaaaggtgaagctct--aatatatatattcattggga----ataacatatgtattagcccatgtagttaccatttcctttttatttttgtggtgtgaacattcaagatctaacttcttggcaaatttcaggtatgtgataaagtgtttata---actatagtgacattactgtacagtagaca
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28083757 219 - 80997621 attgaggtgtaattaac--aaataaaaa-ttgtgtctatttcaggtatgaaaggtgaagctct--aatatatatattcattggga----ataacatatgtattagcccatgtagttaccatttcctttttatttttgtggtgtgaacattcaagatctaacttcttggcaaatttcaggtatgtgataaagtgtttata---actatagtgacattactgtacagtagaca
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2130182 219 + 10377808 attgaggtgtaattaac--aaataaaaa-ttgtgtctatttcaggtatgaaaggtgaagctct--aatatatatattcattggga----ataacatatgtattagcccatgtagttaccatttcctttttatttttgtggtgtgaacattcaagatctaacttcttggcaaatttcaggtatgtgataaagtgtttata---actatagtgacattactgtacagtagaca
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2031173 219 -  8458610 actgaggtataattgac--aaatgaaaa-ttgtgtatatttcaggtatacaaggtgatgctct--gatatatatattcattgtga----atagcatatttattaggtcacgtagttaccatttcctttttatttttgtgatgtgaacatttaagatctaccttctcagttaatttcagatatatgataatatgtttttc---actatagtcacattactgtacattagaaa
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64964682 219 + 75148670 gctgaggtataattgac--aaatgaaaa-ttgtatatatttcaggaatacaaggtgatgctct--gacatatatattcattgtga----atagcatattcattaggtcacgtagttaccatttcctttttatttttgtggtgtgaacatttaagatctaccttctcagttaatttcagatatatgataacgtgttttta---gctatagtcacattactgtacattagaca
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2222040 213 +  4244037 attgaggtataattgac--aaatgaaaa-ttgtgtatatttcaggaatacaaggtgatgctct--ggtatatatattcactgtga----atagcatatttattaggtcacgtagttaccatttcctttttatttttgtagtgtgaacatttaagatctaccttctcagtttatttcagatatatgataaagtgttttta---gctatagtcacattactatagac------
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2233594 219 +  4569836 actgaggtataatcgac--aaatgaaaa-ttgtgtctatttcaggtatacaaggtgatgctct--aatatatatattcattgtga----atagcatatttattaggtcacgtggttaccatttccttttaatttttgtggtgtgaacatttaagatgtaacttctcagttaatttcagatatatgataaagtgttttta---gctatagtcacattactgtacattagact
i colAng1.NW_012122154v1    C 0 I 7632
s saiBol1.JH378271           1872656 230 +  3513951 attgaggcacaactaacaaaaataaaaa-ttgtgtatatttaatgtgtgtgaggtgttgtttcaggatatatacatttattgtaaaatcataatatattccttagctcacatagttacaatttccttttcatttgtatgctgtgaacagctcagatctaccttcttagaaaatttcaggtatacaataaaatattgttgttcactacagtcactttgttgtacactagatc
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       20463 219 -  4077172 actgaggaataattgac--aaataaaaa-ttattcatatttcaggtacacaaggtgatgctct--gatatatatattcattgtga----atgacatctttattagctcacgtggttaccatttcctttttatttttatggtgtgaacattgaagatataccttctcagcaaatttcaggtacatgataaagtattttta---actatagtcacattaccgtacagtagaca
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       14283 219 -    94492 actgaggaataattgac--aaataaaaa-ttattcatatttcaggtatacaaggtgatgctct--gatatatatattcattgtga----ataacatctttattagctcacatagttgccatttcctttttatttttatggtgtgaacatttaagatttactttctcagcaagtttcaggcatatgataaagcattttta---actgcagtcacattaccatacagtagaca
i aotNan1.NW_018505111v1    C 0 C 0
e dasNov3.JH570468            626574 3664 -   852752 I
e otoGar3.GL873537          22862032 5356 + 28711273 I

a score=2436566.000000
s hg38.chr17_JH159148v1_alt    60716 306 +    88070 tactgaacttattcatctttcataactgaTGCTAGTCAAAGAGAATGTCCTAGTT-TTCATCTCCTTTACTTCATCCCTGAACGATGATGACAGTAAGTGGCTGTTGTCTCTTAGCCAAGTCTTCAGAGCATTCTAGATTCACAGTCTCAGAAGT-GGCATCTGTCATGGAAATCTACATTGTTAGCTCATCAGAGGTATTTCTACCACTCCCCTGCTTGTAGGAGGCCCCAAGAAGGTGACCTAGGTCCCCAATCTTTGTATTTCTCACAGATCCAGTATCAATCAA-CCTTCCGTGGGTGAATGCTT
s panTro5.chr17             16371859 308 + 83181570 tgctgaacttattcacctttcataactgaTGCTAGTCAAAAGGAATGTCCTAGTT-TTCATGTCCTTTACTTCATCCCTGAACGATGATCACAGTAAGCGGCCTTCATCCCTCAGCCAAGTCTTCAGAGCATTCTAGATTCACAGTCTCAGAAGTTGGCATCTGTCATGGAAATCTACATTGTTAGCTCATCAGAGGTGTTTCTACCACTCCCATGCTGGTAGGAGGTCCCAAGAAGGTGATCCAGGTCCCCAAACTTTGTATTTCTGTCAGAGCCAGTATCAATCGATCTTTCCCTGAGTGAATGCTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16276890 307 + 83442489 tactgaacttattcatctttcataactgaTGCTAGTCAAAGAGAATGTCCTAGTT-TTCATCTCCTTTACTTCATCCCTGAACGATGATGACAGTAAGTGGCTGTTGTCTCTTAGCCAAGTCTTCAGAGCATTCTAGATTCACAGTCTCAGAAGTTGGCATCTGTCATGGAAATCTACATTGTTAGCTCATCAGAGGTATTTCTACCATTCCTCTGTTGGTAGGAGGCCCCAAGAAGGTGACCTAGGTCCCCAATCTTTGTATTTCTCACAGATCCAGTATCAATCAA-CCTTCCATGGGTGAATGCTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4123689 308 +  4267968 tactgaacttattcatctttcataactgaTGCTAGTCAAAGAGAATGTCCTAGTT-TTCATCTCCTTTACTTCATCCCTGAACGATGATGACAGTAAGTGGCTGTTGTCTCTTAGCCAAGTCTTCAGAGCATTCTAGATTCACAGTCTCAGAAGTTGGCATCTGTCATGGAAATCTACATTGTTAGCTCATCAGAGGTATTTCTACCACTCCCCTGCTTGTAGGAGGCCCCAAGAAGGTGCCCCAGGTCCCCGACTTTTCAATTTCTCTCAGAGCCAGCATCAATCAATCCTTTCATGAGTGAATGGTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2113650 308 -  2193130 tgctgaacttattcatctttcataactgaTGCTGGTCAAAGAGAATGTCCTAGTT-TTCATCTCCTTTACTTCATCCCTGAACGATGATCACAGTAAGTGGCCTTCAACCCTCAGCCAAGTCTTTAGACCATTCTAGATTCACAGTCTCAGAAGTTGGCATCTGTCATGGAAATGTACATTGTTAGCTCTTCAGAGGTATTTCTACCACTCCCCTGCTGGTAGGAGGTCCCAAGAAGGTGACCCAGGTCCCCAAACTTTATATTTCTCTCAGAGCCAGTATTGATCAGTCCTTCCATGAGTGAATGCTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30173666 307 - 77216781 cgctgaactgattcatcattcataactgaTGCTGGTCAAAGAGAATGTCCTAGTT-TTCATCTCCTTTACTTCATCCCTGAACAATGATCACAGTAAGCGGCCGTTGTCTCTTAGCCAAGTCTTCAGAGCA-TCTAGATTCACAGTCTCAGAAGTTGGCATCTATCATGGAAATCTACTTTGTTAGCTCATTAGAGGTATTTCCACCACTCCCATGCTGGTAGGAGGTCCCAAGAAGGTGACCCAGGTCCCTAAACTTTTTATTTCTCTTAGAGCCAGTATCAATCAATCCTTCCATGAGTGAATGCTT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28083976 307 - 80997621 tgctgaactgattcatcattcataactgaTGCTGGTCAAAGAGAATGTCCTAGTT-TTCATCTCCTTTACTTCATCCCTGAACAATGATCACAGTAAGCGGCCGTTGTCTCTTAGCCAAGTCTTCAGAGCA-TCTAGATTCACAGTCTCAGAAGTTGGCATCTATCATGGAAATCTACTTTGTTAGCTCATTAGAGGTATTTCCACCACTCCCATGCTGGTAGGAGGTCCCAAGAAGGTGACCCAGGTCCCTAAACTTTTTATTTCTCTTAGAGCCAGTATCAATCAATCCTTCCATGAGTGAATGCTT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2130401 307 + 10377808 tgctgaactgattcatcattcataactgaTGCTGGTCAAAGAGAATGTCCTAGTT-TTCATCTCCTTTACTTCATCCCTGAACAATGATCACAGTAAGCGGCTGTTGTCTCTTAGCCAAGTCTTCAGAGCA-TCTAGATTCACAGTCTCAGAAGTTGGCATCTATCATGGAAATCTACTTTGTTAGCTCATTAGAGGTATTTCCACCACTCCCATGCTGGTAGGAGGTCCCAAGAAGGTGACCCAGGTCCCTAAACTTTTTATTTCTCTTAGAGCCAGTATCAATCAATCCTTCCATGAGTGAATGCTT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2031392 306 -  8458610 tgctgaacttattcatctttcataactgaTGCTAGTC-AAGAGAATGTCCTAGCT-TTCATCTCCTTTACTTCATCCCTGAACGATGAACACAGTAAGTGGCCGTTATCTCTTAGCCAAGTCTTCAGAGCA-TCTAGATTCACAGTCTCAAAAGTTGGCATCTGTCATGGAAATCCACATTGTTAGCTCATCAGAGGTATTTCCACCACTCCCATGCTGGTAGGAGGTCCCAAGAAGGTGGCCCAGGTCCCCGACTTTTCAATTTCTCTCAGAGCCAGTATCAATCAATCCTCACATGAATGAATGCTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64964901 306 + 75148670 tgctgaacttactcatctttcataactgaTGCTAGTC-AAGAGAATGTCCTAGCT-TTCGTCTCCTTTACTTCACCCCTGAACGATGATCACAGTAAGTGGCCGTTATCTCTTAGCCAAGTCTTCAGAGCA-TCTAGATTCACAGTCTCAGAAGTTGGCATCTGTCATGGAAATCCACATTGTTAGCTCATCAGAGGTATTTCCACCACTCCCATGCTGGTAGGAGGCCCCAAGAAGGTGACCCAGGTCCCCGACTTTTCAATTTCTCTCAGAGCCAGTATCAATCAATCCTTACATGAGTGAATGCTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2222253 306 +  4244037 tgatgaacttatttatctttcataactgaTGCTAGTC-AAGAGAATATCCTAGTT-TTCATATCCTTTACTTCACCCCTGAACGATGATCACAGTAAGCGGCCGTTATCTCTTAGCCAAGTCTTCAGAGCA-TCTAGATTTGCAGTATCAAAAGTTGGCATCTGTCATGGAAATCCACACTGTTAGCTCATCAGAGGTATTTCCACCACTCCCATGCTGGTAGGAGGTCCCAAGAAGGTGACCCAGGTCCCCGACTTTTCAATTTCTCTCCGAGTCAGCATCAATCAATCCTCACATGAGTGAATGCTT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2241445 307 +  4569836 tgctgaactgattcatctttcataactgaTGCTGGTCAAAGAGAATGTCCTAGTT-TTCATCTCCTTTACCTCATCCCTGAACAATAATCACAGTAAGCGGCCGTTGTCTCTTAGCCAAGTCTTCAGAGCA-TCTAGATTCACAGTCTCAGAAGTTGGCATCTGCCATGGAAATCTACTTTGTTAGCTCATCAGAGGTATTTCCACCACTCCCATGCTAGTAGGAGGTCCCAAGAAGGTGACTCAGGTCCCCAAACTTTATATTTCTCTGAGAGCCAGTATCAATCAATCCTTCCATGAGTGAATGCTT
i colAng1.NW_012122154v1    I 7632 C 0
s saiBol1.JH378271           1872886 308 +  3513951 tgcagaagttacttatcttgcaaaactgaTGGTGGTCAAA-AGAATGTGATAGTTCTTCACCTTTTTTACCCCATCACACAATGACTATCACAGTCAGTGACCTTTGTCTGTTAGCTGAGTGTTCAGAGCATTCTAGATACACCACCTCAGAAGTTGGCATCTGTCTTGGAAACCTACATTGTTAGCTCATTAGAGGTATTTTTACCCGTCCCACGCTGGTAGGAGGTCACAAGATGGTGGCCCAGGTCCCTAACTTTTCTAATTCTCTTAGGGACAGTACCAATCAATTCTTCCATGACTGAATACTT
i saiBol1.JH378271          C 0 T 6282
s cebCap1.NW_016107543v1       20682 308 -  4077172 tgctgagcttattcatcttgcgtagctaaTGTTAATCAAAGAGAATAGCCTAGTT-TTCATCTCCTTTACTTCATCACTGAACGTTGATCACAGTAACTGGCCTTTGTCTGTTAGCCAAGTCTTCAGAGCATTCTAGATTCGCAGTATCAGAAGCTGGCATCTGTCATGGAAATCTACATTGGTAGCTCATCAGATATATTTCTACCACTCCCATGCTGGTAGGAGGTCCCAAGAAGGTGACCCAGATCCCCGACTTTTCTATTTCTCTCAGAGCCATGATTAATCAATCCTTCCATAAGTGAATGCTT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       14502 307 -    94492 tgctgagctta-ttatcttgcatagctgaTGTCAGTCAAAGAGAATGTCCTAGTT-CTTATCTCATTTACTTCATCACTAAACGATGATCACAGTAAGCGGCCTTTGTCTCTTAGCCAAGTCTTCAGAGCATTCTAGATTCACAGTCTCAGAAGCTGGCATCTGTCATGGAAATCTACACTGGTAGCTCATCAGAGGTATTTCTACCACTCCCATGCTGGTAGGAGGTCCCAAGAAGGCGACCCAGGTCCCCGACTTTTCTATTTCACTCAGGGCCATGATTAATCAGTCCTTCCATAAGTGAATGCTT
i aotNan1.NW_018505111v1    C 0 C 0
e dasNov3.JH570468            626574 3664 -   852752 I
e otoGar3.GL873537          22862032 5356 + 28711273 I

a score=321383.000000
s hg38.chr17_JH159148v1_alt    61022 42 +    88070 AGCTTG---AATCAGTTCAGGACCCGAAGCAAAAACC-TCTGTCTA
s panTro5.chr17             16372167 42 + 83181570 AGCTTG---CACCAGTTCAGAACCAAAAGCACCAACC-TCTGTCTA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16277197 42 + 83442489 AGCTTG---AATCAGTTCAGGACCCGAAGCACCAACC-TCTGTCTA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4123997 42 +  4267968 ATCTTA---CATCAGTTCAGGACCTGAAGCACCAACC-TCTGTCTA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2113958 42 -  2193130 AGCTTG---CGTCAATTCAGGACCAAAAGCACCAACC-TCTGTCTA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30173973 42 - 77216781 AACTTG---CATCAGTTCAGGACCAAAAGCACCAACC-TCTGTCTA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28084283 42 - 80997621 AACTTG---CATCAGTTCAGGACCAAAAGCACCAACC-TCTGTCTA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2130708 42 + 10377808 AACTTG---CATCAGTTCAGGACCAAAAGCACCAACC-TCTGTCTA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2031698 42 -  8458610 ATCTTA---CATCAGTTCAGGACCCGAAGCACCAACC-TCTGTCTA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64965207 42 + 75148670 ATCTTA---CATCAGTTCAGGACCCGGAGCACCAACC-TCTGTCTG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2222559 42 +  4244037 ATCTTA---CATCAGTTCAGGACCCGAAGCACCAACC-TCTGTCTA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2241752 42 +  4569836 AACTTG---CATCAGTTCAGGACCAAAAGCACCAACC-TCTGTCTA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1866912 46 +  3513951 CCATTGTATCATCAGTTCAGGAACAAAAGTACCAGTCTTCCATCTA
i saiBol1.JH378271          T 6282 I 18618
s cebCap1.NW_016107543v1       20990 42 -  4077172 AGCTTG---CATCAGCTCAGGACCAAAAGCACCAATC-TCTGTCTA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       14809 42 -    94492 AGCTCG---CATCAGCTCAGGACCGAAAGCACCAACC-TCTGTCTA
i aotNan1.NW_018505111v1    C 0 C 0
e dasNov3.JH570468            626574 3664 -   852752 I
e otoGar3.GL873537          22862032 5356 + 28711273 I

a score=24705.000000
s hg38.chr17_JH159148v1_alt    61064 5 +    88070 TCATG
s panPan2.chr17             16277239 5 + 83442489 TCATG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4124039 5 +  4267968 TTATG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114000 5 -  2193130 TCATG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30174015 5 - 77216781 TCATG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28084325 5 - 80997621 TCATG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2130750 5 + 10377808 TCATG
i macNem1.NW_012014910v1    C 0 C 0
s colAng1.NW_012122154v1     2241794 5 +  4569836 TCATG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1885576 5 +  3513951 TCATG
i saiBol1.JH378271          I 18618 C 0
s cebCap1.NW_016107543v1       21032 5 -  4077172 TCATG
i cebCap1.NW_016107543v1    C 0 I 2
s aotNan1.NW_018505111v1       14851 5 -    94492 TCATG
i aotNan1.NW_018505111v1    C 0 I 2
e manLeu1.NW_012106252v1     2222601 0 +  4244037 C
e dasNov3.JH570468            626574 3664 -   852752 I
e otoGar3.GL873537          22862032 5356 + 28711273 I
e chlSab2.chr16             64965249 0 + 75148670 C
e cerAty1.NW_012006043v1     2031740 0 -  8458610 C
e panTro5.chr17             16372209 0 + 83181570 C

a score=14471.000000
s hg38.chr17_JH159148v1_alt    61069 5 +    88070 ACTTC
s panPan2.chr17             16277244 5 + 83442489 ACTTC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4124044 5 +  4267968 TCTTC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114005 5 -  2193130 ACTTC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30174020 5 - 77216781 ACTTC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28084330 5 - 80997621 ACTTC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2130755 5 + 10377808 ACTTC
i macNem1.NW_012014910v1    C 0 C 0
s colAng1.NW_012122154v1     2241799 5 +  4569836 ACTTC
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1885581 5 +  3513951 GCTTC
i saiBol1.JH378271          C 0 C 0
e aotNan1.NW_018505111v1       14856 2 -    94492 I
e cebCap1.NW_016107543v1       21037 2 -  4077172 I
e manLeu1.NW_012106252v1     2222601 0 +  4244037 C
e dasNov3.JH570468            626574 3664 -   852752 I
e otoGar3.GL873537          22862032 5356 + 28711273 I
e chlSab2.chr16             64965249 0 + 75148670 C
e cerAty1.NW_012006043v1     2031740 0 -  8458610 C
e panTro5.chr17             16372209 0 + 83181570 C

a score=2548.000000
s hg38.chr17_JH159148v1_alt    61074 1 +    88070 T
s panPan2.chr17             16277249 1 + 83442489 T
i panPan2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114010 1 -  2193130 T
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30174025 1 - 77216781 T
i rheMac8.chr16             C 0 I 358
s macFas5.chr16             28084335 1 - 80997621 T
i macFas5.chr16             C 0 I 65
s macNem1.NW_012014910v1     2130760 1 + 10377808 T
i macNem1.NW_012014910v1    C 0 T 9502
s colAng1.NW_012122154v1     2241804 1 +  4569836 T
i colAng1.NW_012122154v1    C 0 T 19716
s saiBol1.JH378271           1885586 1 +  3513951 T
i saiBol1.JH378271          C 0 C 0
e aotNan1.NW_018505111v1       14856 2 -    94492 I
e cebCap1.NW_016107543v1       21037 2 -  4077172 I
e manLeu1.NW_012106252v1     2222601 0 +  4244037 C
e dasNov3.JH570468            626574 3664 -   852752 I
e otoGar3.GL873537          22862032 5356 + 28711273 I
e chlSab2.chr16             64965249 0 + 75148670 C
e cerAty1.NW_012006043v1     2031740 0 -  8458610 C
e gorGor5.CYUI01015385v1     4124049 0 +  4267968 C
e panTro5.chr17             16372209 0 + 83181570 C

a score=476.000000
s hg38.chr17_JH159148v1_alt    61075 1 +    88070 G
s panPan2.chr17             16277250 1 + 83442489 G
i panPan2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114011 1 -  2193130 G
i nomLeu3.chrUn_GL397460_1  C 0 T 9498
s macFas5.chr16             28084401 1 - 80997621 G
i macFas5.chr16             I 65 C 0
s saiBol1.JH378271           1885587 1 +  3513951 A
i saiBol1.JH378271          C 0 C 0
e aotNan1.NW_018505111v1       14856 2 -    94492 I
e cebCap1.NW_016107543v1       21037 2 -  4077172 I
e manLeu1.NW_012106252v1     2222601 0 +  4244037 C
e dasNov3.JH570468            626574 3664 -   852752 I
e otoGar3.GL873537          22862032 5356 + 28711273 I
e colAng1.NW_012122154v1     2241805 19716 +  4569836 T
e chlSab2.chr16             64965249 0 + 75148670 C
e cerAty1.NW_012006043v1     2031740 0 -  8458610 C
e macNem1.NW_012014910v1     2130761 9502 + 10377808 T
e rheMac8.chr16             30174026 358 - 77216781 I
e gorGor5.CYUI01015385v1     4124049 0 +  4267968 C
e panTro5.chr17             16372209 0 + 83181570 C

a score=5438.000000
s hg38.chr17_JH159148v1_alt    61076 29 +    88070 -----------TTTCTTTTTTTTTTC-TTTCtttttttttt
s panPan2.chr17             16277251 23 + 83442489 -----------TTTCTTTttttt-------ctttttttttt
i panPan2.chr17             C 0 C 0
s macFas5.chr16             28084402 30 - 80997621 -----------TTTCTTGtttttttcttttctttttttctt
i macFas5.chr16             C 0 C 0
s saiBol1.JH378271           1885588 40 +  3513951 TGAATGCACAAGTTCTACTTTTCTCC-TTTCTTATGTTCTT
i saiBol1.JH378271          C 0 T 18670
e aotNan1.NW_018505111v1       14856  2 -    94492 I
e cebCap1.NW_016107543v1       21037  2 -  4077172 I
e manLeu1.NW_012106252v1     2222601  0 +  4244037 C
e dasNov3.JH570468            626574 3664 -   852752 I
e otoGar3.GL873537          22862032 5356 + 28711273 I
e colAng1.NW_012122154v1     2241805 19716 +  4569836 T
e chlSab2.chr16             64965249  0 + 75148670 C
e cerAty1.NW_012006043v1     2031740  0 -  8458610 C
e macNem1.NW_012014910v1     2130761 9502 + 10377808 T
e rheMac8.chr16             30174026 358 - 77216781 I
e nomLeu3.chrUn_GL397460_1   2114012 9498 -  2193130 T
e gorGor5.CYUI01015385v1     4124049  0 +  4267968 C
e panTro5.chr17             16372209  0 + 83181570 C

a score=-558.000000
s hg38.chr17_JH159148v1_alt    61105 3 +    88070 tct
s panPan2.chr17             16277274 2 + 83442489 tt-
i panPan2.chr17             C 0 C 0
s macFas5.chr16             28084432 2 - 80997621 tt-
i macFas5.chr16             C 0 I 252
e aotNan1.NW_018505111v1       14856 2 -    94492 I
e cebCap1.NW_016107543v1       21037 2 -  4077172 I
e manLeu1.NW_012106252v1     2222601 0 +  4244037 C
e dasNov3.JH570468            626574 3664 -   852752 I
e otoGar3.GL873537          22862032 5356 + 28711273 I
e saiBol1.JH378271           1885628 18670 +  3513951 T
e colAng1.NW_012122154v1     2241805 19716 +  4569836 T
e chlSab2.chr16             64965249 0 + 75148670 C
e cerAty1.NW_012006043v1     2031740 0 -  8458610 C
e macNem1.NW_012014910v1     2130761 9502 + 10377808 T
e rheMac8.chr16             30174026 358 - 77216781 I
e nomLeu3.chrUn_GL397460_1   2114012 9498 -  2193130 T
e gorGor5.CYUI01015385v1     4124049 0 +  4267968 C
e panTro5.chr17             16372209 0 + 83181570 C

a score=219358.000000
s hg38.chr17_JH159148v1_alt    61108 2429 +    88070 ttcactttaagttctagggtacatgtgcacaatgtgcaggtttgttacatatgtatacgtgcaccataatggtgtgctgcacccattaactcgttatttacattagatatatctcctaatgctatccctccccactcccctcaccccataataggccccggtgtgtgatgttccccttcctgcgtccaacggttctcattgttcaattgccacctatgactgagaatgtgtggtgtttggttttttgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatccttttttatggctgcatagtattctgtggtgtatatgtgtcacattttcttaatcccatctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgctgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttgtagatccttgaggaatcaccacaccgtcttccacaatggttaaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatagccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgtcttttggctgcataaatgtcttcttttgagaagtgtctgtttatatccttcatccagtttttgatgggatggtttgtttttttcttgtaaatttgtttgagttctttgtagattctggatatttgccctttgtcagatgagtagatttcaaaaattttctcccattctgtaggctgcctgttcactctgatggtagtttcttttgctgtgcagaagttctttagtttaattagatcccatttgtcaattttggcttttattgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaacatttaagtctttaatccatcttaaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctacgtatgactagccagttttcccagcaccatttattaaatagggaatcctttccccatttcttgcttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtattatttctgagggctctgttctgttccattggtctatacctctgttttggtaccagtaccatgatgtttttgttactatagccttttagtatagttttaagttaggtagcatgatgactccagctttgttcttttggcttaggagtgtcttggcaatgcaggcccttttttggttccatatgaactttaaagtagttttttccaattctgtgaagaaagtcattggtagcttaatgggaatggcattgaatctatgaattaccctgggcagtatggccattttcatgatattgattcttcctatccatgagcatgggatgttcttccatttgtttgtgtcctcttttatttcattgagcagaggtttgtagttctccttgaagaggtccttcacgtcccttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttccttcatgatttggctctctctttgtctgttattggtgtataacaatgcttgtgatttttgcactttgattttatatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagatgatggggttttctaaatatacaatcatgtcacctgcaaacagggacaatttgacttcctcttttcctaattgaataccatttatttctttctcctgcctgattgccctggccagaacttccaacact--gttgaataggagtggtgagagagggcatccctgtcttgtgccggttttcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtgggtttgtcataaatagctcttattattttgagatcgtcccatcaatacctaatttattgagagtttttagcatgaggagttgttgaattttgtcaaaggccttttctgcatctattgagatatcacgtggttttgtctttggttctgcttatatgctggattatgtttattgatttgcatatgttgaaccagccttgcatcccagggatgaagcccactttatcatgttggatcagctttttgatgtgctgctgaattcagtttgccagtattttaatgaggatttttgcatcaatgttcatcagggatat
s panPan2.chr17             16277276 2427 + 83442489 ---actttaagttctagggtacatgtgcacaatgtgcagttttgttacatatgtatacgtgcaccatgatggtgtgctgcacccattaactcgttatttacattagatatatctcctaatgctatccctccccactcccctcaccccatcacaggccccggtgtgtgatgttccccttcctgcgtccaacggttctcattgttcaattgccacctatgagtgagaacgtgtggtgtttggttttttgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatccttttttatggctgcatagtattccgtggtgtatatgtgtcacattttcttaatcccatctatcattgatggacatttgggttggttccaagtctttgctattgtgaataatgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccttgaggaatcaccacactgtcttctacaatggttaaactagtttacagtcccatcaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatcgccattctaattggtgtgagatggtatctcattgtggttttgatttgcgtttctctgatggccagtgatgatgagcattttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgtttatatccttcatccactttttgatgggatggtttgtttttt-ctcgtaaatttgtttgagttctttgtagattctggatattcgccctttgtcagatgagtagatttcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatctcatttgtcaattttggcttttattgccattgcttttggtgttttagacgtgaagtccttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaacatttaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtttcagttttctacatatggctagccagttttcctagcaccatttattaaatagggaatcctttccccatttcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtattatttctgagggctctgttctgttccattggtctatacctctgttttggtaccagtaccatgatgttttggttactatagccttgtagtatagttttaagttaggtagcatgatgcctccagctttgttcttttggcttaggattgtcttggcaatgcgggcccttttttggttccatatgaactttaaagtagttttttccaattctgtgaagaaagtcattggtagcttaatgggaatggcattgaatctatgaattaccctgtgctgtatggccattttcatgatattgattcttcctatccatgagtatgggatgttcttccatttgtttgtgtcctcttttatttcattgagcagtggtttgtagttctccttgaagaggtctttcacgtcccttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttccttcatgatttggctctctgtttgtctgttattggtgtataacaatgcttgtgatttttgcacattgattttatatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagacaatggggttttctaaatatacaatcatgtcatctgcaaacagggactatttgactttctcttttcctaattgaataccctttatttctttctcctgcctgattgccctggccagaacttaaaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtgggtttgtcataaatagctcttattattttgagatcgtctcatcaatacctaatttattgagagtttttagcatgaagagttgttgaattttgtcaaaggccttttctgcatctattgagatatcatgtggttttgtctttggttctgcttatacgctggattatgtttattgatttgcgtatgttgaaccagccttgcatcccagggatgaagcccactttatcatgttggatcagctttttgatgtgctgctgaattcagtttgccagtattttaatgaggatttttgcatcaatgttcatcagggatat
i panPan2.chr17             C 0 C 0
e aotNan1.NW_018505111v1       14856    2 -    94492 I
e cebCap1.NW_016107543v1       21037    2 -  4077172 I
e manLeu1.NW_012106252v1     2222601    0 +  4244037 C
e dasNov3.JH570468            626574 3664 -   852752 I
e otoGar3.GL873537          22862032 5356 + 28711273 I
e saiBol1.JH378271           1885628 18670 +  3513951 T
e colAng1.NW_012122154v1     2241805 19716 +  4569836 T
e chlSab2.chr16             64965249    0 + 75148670 C
e cerAty1.NW_012006043v1     2031740    0 -  8458610 C
e macNem1.NW_012014910v1     2130761 9502 + 10377808 T
e macFas5.chr16             28084434  252 - 80997621 I
e rheMac8.chr16             30174026  358 - 77216781 I
e nomLeu3.chrUn_GL397460_1   2114012 9498 -  2193130 T
e gorGor5.CYUI01015385v1     4124049    0 +  4267968 C
e panTro5.chr17             16372209    0 + 83181570 C

a score=957321.000000
s hg38.chr17_JH159148v1_alt    63537 3637 +    88070 tggtcgaaaattctctttttttgttgtgtctctgccaggctttggtatcaggatgatgctggcctcataaaatgagttagggaggagtccctctttttctattgattataatagtttcagaagaaatggtaccagctcctccttgtacctctggtagaatttggctgtgaatccgtctgctcctggacttttttttggttggtaggctattaattattgcctcaatttcagagcctgttattggtctattcagggattcagcttcttcctggtttagtctttattcatttcttcaagattttctagtttatttgcatagaggtgtttatagtattctctgatggtagtctgtatttctgtgggattggtggtgatatcccatttatcattttttattgcgtctatttgattcttctctcttttcttctttattagtcttgctaacggtctatcaattttgttgatcttttcaaaaaaccagcgactggattcattgattttttgaagggtttttcatgtctctatttccttcagttctgctctgatcttagttatttcttgccttctgctagcttttgaatgtgattgctcttgcttctctagttcttttaattgtgatgttagggtgtcaattttagatctttcctgctttgtcttgtgggcatttagtgctataaatttccctctacacactgctttaaatgtgtcccagagattctggtatgttgtgtctttgttctcatttgtttcaaagaatatctttatttctgccttcattttgttatgtacccagtagtcattcaggagcaggttgttcagttttcatgtaactgagtggttttgagtgagtttctaaatcctcagttctagtttgattgcaccgttgtctgagagacagtttgttataatttctcttctcttacatttgctgaggagtgctttacttccaactatgtggtcaattttggaataagtgtgatgtggtgctgagaagaatgtatattctgttgatttggggtggagagctctgtagatgtctatgaggtccgtttggcgtagagctgagttcaatttctagatatccttgttaacttcctgtctcgttgatctgtctaatgttgacagtggggtgttacattctcccattattattgtgtgggagtctaagtctctttgtaggtctctaaggacttgctttatgaatctgggtgctcctgtattgggtgcttatatatttaggatagttagctattcttgttgagttgatccctttaccattatgcaatggccttctttgtctctttttatctttgttgatttaaagtcagttttatcacagactacaattgcaaaccctcctttttttt----ttccatttgcttggtagatcttcctccatccctttattttgagcatatgtgtgtctctgtatgggagatgggtctcctgaatacagcacactgatgggtcttgactctttatccaatttgccagtctgtgtctttcaactggagcatttagcccatttacacttaaggttaatattgttatgtgtgaatttgatcctgtcattatgatgttagctggttattttgctcgttagttgatgcagtttcttcctagcattgacagcctttacaatttggcatgtttttgcagtggctggtaccagttgttcctttctatgtttagtgcttccttcaggagctcttgtaaggcaggcctggtggtgacaaaatctctcagcatttgcctgtctgtaaagtattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattcttttctttaagaatgttgaatattggcccccactctcttctggcttgtagagtttctgccgagagatctgctgttagtctgatgggcttccctttgtgggtaacccgacgtttctctctggctgcccttaacattttttccttcatttcaactttggtgaatctgacaattatgtgtcttggagttgctcttctcgaggagtatctttgtggtgttctctgtatttcctgaatttgaatattcgcctgtcttgctaggttggggaagttctcctcgataatatcctgcagagtgttttccaactcggtttcattctccccgtcactttcaggtacaccaatcagatgtagatttggtcttttcagatagtcccatatttcttggaggctttgttcctttctttttactcttttttctctaaacttctcttctctcttcatttcattcctgtgatcttcaatcactgataccctttcttccagttgattgaatttgctactgaagcttgtgcattcgtcacgtagttctcatgccatggttttcagctccatcaggtcatttaaggacttctctacactggttattttagttagccatttgtctaatcttttttcaaggtttttagcttctttgcaatgggttcgaacttcctcttttagcttggagaagtttgttcatctgaagccttcttctctcaactcatcaaagtcattctccatccagctttgttccgttgctggcaaggagctgtgctcctctggaaggtgagaggcac-ctgatttttagaattttcagcttttctgctctgtttctccccatctttgtgattttatctacctttggtctttgatgatggtgacatacagatggggttttggtgtggatgtcctttctgtttgttagttttccttctaacagtcaggaccctcagctgcaggtctgttggagtttgctgaaggtccactccagaccctgtttgcctgggtatcggcagcggaggctgcagaacagcgaatattgctgaacagtaaatgttgctgcctgatcatttctctgg-agcttcatctcagaggggtatctggccatgtgaggtctcagactgcccctactggagggtgtctcccagttaggctacttgggggtcagggacccacttgaggaggcagtctgtctgttctcagatctcaaactgtgtgctaggagaaccactactctcttcaaagctgtcagac-gggacatttaagtctgcagaggtttctgctgccttttgtttggctatgccctgccccagaggtggagtctacagtggcaggcaggcctccttgagctgtggtgggctccacccagttcgagcttcctggccacttt----atctactcaagcctcagccatggcaggcgcccctcccccagcctcactgccaccttgcagttcgatctcagactgctgtgctaacaatgagagaggctctgtgggcgtggg-ctctctgagccaggcatgggacataatctcctggtgtgccgtttgtaagaccattggaaaagggcagtattagggtgtgagtgacccagttttccaggtgccatctgtcacagcttcccccgactccttgcaattcctgggtgaggcaatgcctcgccctgctttggctcatgctcagtgggctgcacccactgtcctgcacccactgtccaacaagccccagtgagatgaacccggtacctcagttggaaatgcagaaatcaaccatcttctgcgtcactcatgctgggagctgtagactggagctgttcccattcagccaccttggaa
s panPan2.chr17             16279703 3646 + 83442489 tggtctaaaattctctttttttgttgtgtctctgccaggctttggtatcaggatgatgctggcctcataaaatgagttagggaggattccctcttcttctattgattataatagtttcagaagaaatggtaccagctcctccttgtacctctggtagaatttggctgtgaatccgtctgctcctggacttttttttggttggtaggctattaattattgcctcaatttcagagcctgttattggtctattcagggattcagcttcttcctggtttagtctttatccatttcttcaagattttctagtttatttgcatagaggtgtttatagtattctctgatggtagtttgtatttctgtgggattggtgatgatatcccctttatcattttttattgcgtctatttgattcttctctcttttcttctttatcagtcttgctagcggtctatcaattttgttgatcttttcaaaaaaccagctactggattcattgattttttgaagggttttttgtgtctctatctccttcagttctgctctgatcttagttatttcttgccttctgctagcttttgaatgtgattgctcttgcttctctagttcttttaattgcgatgttagggtgtcaattttagatctttcctgctttctcttgtgggcatttagtgctataaatttccctctacacactgctttaaatgtgtcccagagattctggtatgttgtgtctttgttctcattggtttcaaagaatatctttatttctgccttcattttgttatgtacccagtagtcattcaggagcaggttgttcagttttcatgtagctgagtggttttgagtgagtttctaaatcctcagttctagtttgattgcactgttgtctgagagacagtttgttataatttctgttcttttacatttgctgaggagggctttacttccaactatgtggtcaattttggaataagtgtgatgtggtgctgaggagaatgtatattctgttgatttggggtggagagttctgtagatgtctatgaggtccgtttggtgtagagctgagttcaatttctagatatccttgttaacttcctgtctcgtcgatctgtctaatattgacagtggggtgttacattctcccattattattgtgtgggagtctaagtctctttgtaggtctctaaggacttgctttatgaatctgggtgctcctgtattgggtgcgtatatatttaggatagttagctattcttgttgagttgatccctttaccattatgcaatggccttctttgtctctttttatctttgttggtttaaagtttgttttatcagagactaggattgcaacccctgctttttttt-gttttccatttgcttggtagatcttcctccatccctttattttgagcctatgtgtgtctctgtatgtgagatgggtctcctgaatacagcacgctgatgggtcttgactctttatccaatttgccagtctgtgtctttcaactggagcatttagcccatttacacttaaggttaatattgttatgtgtgaatttgatcctgtcattatgatgttagctggttattttgctcgttagttgatgcagtttcttcctagcattgacagtctttacaatttggcatgtttttgcagtggctggtaccggttgttcctttctatgtttagtgcttccttcaggagctcttgtaaggcaggcctggtggtgacaaaatctctcagcatttgcttgtctgtaaagtattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattcttttctttaagaatgttgaatattggcccccactctcttctggcttgtagagtttctgctgagagatctgctgttagtctgatgggcttccctttgtgggtaacccgacgtttctctctggctgcccttaacattttttccttcatttcaactttggtgaatctgacaattatgtgtcttggagttgctcttctcgaggagtatctttgtggtgttctctgtatttcctgaatttaaatatttgcctgtcttgctatgttggggaagttctcctcgataatatcctgcagagtgttttccaactcggtttcattctccctgtcactttcaggtacatcaattagacgtagatttggtcttttcacatagtcccatatttcttggaggctttgttcctttctttttactcttttttctctaaccttctcttctcacttcatttcattcatttgatcttcaatctctgatatcctttcttccagtcgattgaattggctactgaagcttgtgcattcgtcacgtagttctcatgccatggttttcagctccatcaggtcatttaaggacttctctacactggttattttagttagccatttgtctaatcttttttcaaggtttttagcttctttgcgatgggttcgaacttcctcttttagcttggagaagtttgatcgtctgaagccttcttctctcaactcatcaaagtcattctccgtccagctttgttccattgctggcgaggagctgtgttcctctggaaggtgagaggcactctgatttttagaattttcagcttttctgctctgtttctccccatccttgtggttttatctacctttggtctttgatgatggtgacatacagatggggttttggtgtggatgtcctttctgtttgttagttttccttctaacagtcaggaccctcagctgcaggtctgttggagtttgctggaggtccactccagaccctgtttgcctgggtattggcagcggaggctgcagaacagcgaatattgctcaacagtaaatgttgctgcctgatcgtttctctgg-agcttcatctcagaggggtatccggccatgtgaggtctcagactgcccctactgcagggtttctcccagttaggctactcgggggtcagggacccacttgaggaggcagtctgtctgttctcagatctcaaactctgtgctgggagaaccactactctcttcaaagctgtcagacagggacatttaagtctgcagaggtttctgctgccttttgttcggctatgccctgccccagaggtggagtctacagcggcaggcaggcctccttgagctgtggtgggctccacccagtttgagcttcctggccactttgtttatctactcaagcctcagccatggcaggcgcccctcccctagcttcactgacaccttgcagttcgatctcagactgctgtgctagcaatgagagaggctctgtgggtgtggg-ctctctgaaccaggcgtgggacataatctcctggtgtgccatttgtaagaccattggaaaagggcagtattagggtgggagtgacccagttttccaggtgccatctgtcacagcttcccccgactccttgcacttcctgggtgaggcaatgcctcgccctgctttggctcatgctcagtgggctgcacccactgtcctgcacccactgtccaacaagccccagtgagatgaactcggtacctcagttggaaatgcagaaatcaaccatcttctgcgtcgctcatgctgggagctgtagactggagctgttcccatttggccaccttggaa
i panPan2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1   2104514 3616 -  2193130 tggtctaaaattctctttttttgttgtgtctctgccaggctttggtatcaggatgatgctggcctcataaaatgagttagggaggattccctctttttctattgattataatagtttcagaaggaatggtaccagctcctccttgtacctctggtagaatttggcggtgaatccatctgctcctggac-tttttttggttggtaggctattaattattgcctcaatttcagagtctgttattggtctattcagggattcaacttcttcctggtttagtctttacccatttcttcaagattttctagtttatttgcgtagaggtgtttatagtattctctgatggtagtttgtatttctgtgggatcggtggtgatatctcctttatcattttttattgcgtctatttgattcttctctcttttcttctttattagtcttgctagcggtctatcaattttgttgatcttttcaaaaaaccagctcctggattcattgatttcttgaagggcttttcgtgtctctatccccttcagttctgctctggtcttagttatttcttgccttctgctagcttttgaatgtgattgctcttgcttctttagttcttttaattgtgatgttagggtgtcaattttagatctttcctgctttctcttgtgggcatttagtgctataaatttccctctacacactgctttgaatgtgtcccagagattctggtatgttgtgtctttgttcttgttggtttcaaagaacatctttatttctgccttcatttcattatgtacccagtagtcattcaggtgcaggttgttcagtttccatgtagctgagtggttttgagtgagtttcctaatcccgagttct----------------------------agtttgttataatttctgtt-ttttacatttgctgaggagtgctttacttccaactatgtggtcaattttggaataagtgtgatgtggtgctgagaagaatgtatattctgttggtttggggt--agagttctgtagatgtctatgaggtccatttggtgtagagctgagttcaatttctagatatccttgttaactttctgtcttgttgatctgtctaatgttgacagtggggtgttaaaatctcccattattattgtgtgggaatctaagtctctttgtaggtctctaaggacttgctttatgaatctgggtgctcctgtattgggtgcatagatatttaggatagttagctattcttgttgaattgatccctttaccattatgcaatggccttctttgtctcttttgatctttgttggtttaaagtctgttttatcagagactgggattgcaactcttactttttttttgttttccatttgcttggtagatcttcctccatccctttattttgagcctctgtgtgtctctgtatgtgagatgggtctcctgaatacagcacactgatgggtcttgactctttatccaatttgccagtctgtgtctttcaactggagcatttagcccatttacatttaaggtaaatattgttacgtgtgaatttgaccctgtcattatgatgttagctggttattttgctcgttagttgatgcagtttcttcctagcattgatggtctttaaaatttggcatgtttttgcagtggctggtaccggttgttcctttctgtgtttagtgcttccttcaggagctcttgtaaggcgggcctggtggtgacaaaatctctcagcatttgcttgtctgtaaagcattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattcttttctttaagaatgttgaatattggcccccactctcttctggcttgtagagtttctgccgagagatctgctcttagtctgatggacttccctttgtgggtaacccgacctttctctctggctgcccttaacattttttccttcatttcaactttggtgaatctgacaattatgtgtcttggagttgctcttctcgaggagtatctttgtggcattctctgtatttcctgaatttgaatatttgccattcttgctaggttggggaagttctcctggaaaatatcctgcagagtgttttccaactt-gtttcattctccccgtcactttcaggtacaccaatcagacgtagatttggtcttttcacatagtcccatatttcttggaggctttgttcctttctttttactcttttttctctaaacttctcttttcacttcatttaattcattcaatcttcaatcactgataccctttcttccagttgattgaatcggctactgaagcttgtgcattcatcacgtagttctcatgccatggttttcagctccatcaggtcatttaaggacttctctacactggttattttagttagtcatttgtctaatcttttttcaaggtttttagcttctttgcagtgggttcgaacttcctcctttagcttggagaagtttgattgtctgaagccttcttctctcaactcatcaaagtcattctccatccagctttgttccattgctggcgaggagctgtgttcctttggaaggagagaggtgctctgatttttagaattttcagcttttctgctctgtttctccccatctttgtggttttatctacctttggtctttgatgatggtgacatacagatggggttttggtgtggatgtcctttctgtttgttagttttccttctaacagtcaggaccctcagctgcaggtctgttggagtttgctggaggtccaccccagaccctgtttgcctgggtatgagcagcagaggctgcagaacagcaaatattgctgaacagtaaatgttgctgcctgatcgttcctctggaagctttgtctcagaggggtacctggccatgtgaggtctcagactgcccctactggaggatgtctcccagttaggctacttgggggtcagggacccacttgaggaggcagtctgtctgttctcagatctcaaactccgtgctgggagaaccactactctcttcaaagctgtcagacagggacatttaagtctgcagaggtttctgctgccttttgttcggctatgacctgccccagaggtggagtctacagtggcaggcaggcctccttgagctgtggtgggctccacccagttcgagcttcctggccactttgtttatctactcaagcctcagccatggcaggcgcccctcccccagcctcgctgccgccttgcagttcgatctcagactgctctgctggcaatgagcgaggctctgtgggcatgggaccctctgagccaggcgtgggacataatctcctggtgtgccgtttgtaagaccattggaaaagggcagtattagggtgggagtgacccagttttccaggtgccatctgtcacagcttcccctgactccttgcacttcctgggtgaggcaatgccttgtcttgctttggctcatgctcagtgggctgcacccactgtcctgcactcactgtccaataagccccagtgagatgaacccggtacctcagttggaaatgcagaaatcacctatcttctgcatcgctcacgctgggagctgtagactagagctgttcctattcggccaccttggaa
i nomLeu3.chrUn_GL397460_1  T 9498 C 0
e aotNan1.NW_018505111v1       14856    2 -    94492 I
e cebCap1.NW_016107543v1       21037    2 -  4077172 I
e manLeu1.NW_012106252v1     2222601    0 +  4244037 C
e dasNov3.JH570468            626574 3664 -   852752 I
e otoGar3.GL873537          22862032 5356 + 28711273 I
e saiBol1.JH378271           1885628 18670 +  3513951 T
e colAng1.NW_012122154v1     2241805 19716 +  4569836 T
e chlSab2.chr16             64965249    0 + 75148670 C
e cerAty1.NW_012006043v1     2031740    0 -  8458610 C
e macNem1.NW_012014910v1     2130761 9502 + 10377808 T
e macFas5.chr16             28084434  252 - 80997621 I
e rheMac8.chr16             30174026  358 - 77216781 I
e gorGor5.CYUI01015385v1     4124049    0 +  4267968 C
e panTro5.chr17             16372209    0 + 83181570 C

a score=2635.000000
s hg38.chr17_JH159148v1_alt    67174 10 +    88070 cttcccccTT
s panPan2.chr17             16283349 10 + 83442489 ctgcccccTA
i panPan2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1   2108130 10 -  2193130 ctgcccccTA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s dasNov3.JH570468            630238 10 -   852752 CTTCTGTCTG
i dasNov3.JH570468          I 3664 C 0
e aotNan1.NW_018505111v1       14856  2 -    94492 I
e cebCap1.NW_016107543v1       21037  2 -  4077172 I
e manLeu1.NW_012106252v1     2222601  0 +  4244037 C
e otoGar3.GL873537          22862032 5356 + 28711273 I
e saiBol1.JH378271           1885628 18670 +  3513951 T
e colAng1.NW_012122154v1     2241805 19716 +  4569836 T
e chlSab2.chr16             64965249  0 + 75148670 C
e cerAty1.NW_012006043v1     2031740  0 -  8458610 C
e macNem1.NW_012014910v1     2130761 9502 + 10377808 T
e macFas5.chr16             28084434 252 - 80997621 I
e rheMac8.chr16             30174026 358 - 77216781 I
e gorGor5.CYUI01015385v1     4124049  0 +  4267968 C
e panTro5.chr17             16372209  0 + 83181570 C

a score=30540.000000
s hg38.chr17_JH159148v1_alt    67184 7 +    88070 TCATGAC
s panTro5.chr17             16372209 7 + 83181570 TCATGAC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16283359 7 + 83442489 TCATGAC
i panPan2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1   2108140 7 -  2193130 TCATGAC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2121259 7 + 10377808 TCATGAC
i macNem1.NW_012014910v1    T 9502 C 0
s cerAty1.NW_012006043v1     2031740 7 -  8458610 TCATGAC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64965249 7 + 75148670 TCATGAT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2222601 7 +  4244037 TCATGAC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2222089 7 +  4569836 TCATGAC
i colAng1.NW_012122154v1    T 19716 C 0
s saiBol1.JH378271           1866958 7 +  3513951 TCGTGTC
i saiBol1.JH378271          T 18670 C 0
s dasNov3.JH570468            630248 7 -   852752 TCATAAC
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1       14856 2 -    94492 I
e cebCap1.NW_016107543v1       21037 2 -  4077172 I
e otoGar3.GL873537          22862032 5356 + 28711273 I
e macFas5.chr16             28084434 252 - 80997621 I
e rheMac8.chr16             30174026 358 - 77216781 I
e gorGor5.CYUI01015385v1     4124049 0 +  4267968 C

a score=15384.000000
s hg38.chr17_JH159148v1_alt    67191 3 +    88070 TTC-
s panTro5.chr17             16372216 3 + 83181570 TTC-
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16283366 3 + 83442489 TTC-
i panPan2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1   2108147 3 -  2193130 TTC-
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macNem1.NW_012014910v1     2121266 3 + 10377808 TTC-
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2031747 3 -  8458610 TTC-
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64965256 3 + 75148670 TTC-
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2222608 3 +  4244037 TTC-
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2222096 3 +  4569836 TTC-
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1866965 3 +  3513951 TTC-
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       21039 3 -  4077172 TTC-
i cebCap1.NW_016107543v1    I 2 C 0
s aotNan1.NW_018505111v1       14858 3 -    94492 TTC-
i aotNan1.NW_018505111v1    I 2 C 0
s dasNov3.JH570468            630255 3 -   852752 -TCT
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22862032 5356 + 28711273 I
e macFas5.chr16             28084434 252 - 80997621 I
e rheMac8.chr16             30174026 358 - 77216781 I
e gorGor5.CYUI01015385v1     4124049 0 +  4267968 C

a score=12422.000000
s hg38.chr17_JH159148v1_alt    67194 2 +    88070 TA
s panTro5.chr17             16372219 2 + 83181570 TA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16283369 2 + 83442489 TA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4124049 2 +  4267968 TA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2108150 2 -  2193130 TA
i nomLeu3.chrUn_GL397460_1  C 0 I 5860
s macNem1.NW_012014910v1     2121269 2 + 10377808 TA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2031750 2 -  8458610 TA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64965259 2 + 75148670 TA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2222611 2 +  4244037 TA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2222099 2 +  4569836 TA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1866968 2 +  3513951 CA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       21042 2 -  4077172 TA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       14861 2 -    94492 TA
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            630258 2 -   852752 GA
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22862032 5356 + 28711273 I
e macFas5.chr16             28084434 252 - 80997621 I
e rheMac8.chr16             30174026 358 - 77216781 I

a score=336087.000000
s hg38.chr17_JH159148v1_alt    67196 57 +    88070 TGAATGCAGAAG---------TTCTACTTTGCTCCTTTCTTACATTATGTTGATTTCCCTGAAAAC
s panTro5.chr17             16372221 57 + 83181570 TGAATGCACATG---------TTCTACTTTGCTCCTTTCTTACATTCTTCCGATTTCCCTGCAAAC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16283371 57 + 83442489 TGAATGCAGAAG---------TTCTACTTTGCTCCTTTCTTACATTATTTTGATTTCCTTGAAAAC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4124051 57 +  4267968 TGAATGCACAAG---------TTCTACCTTGCTCCTTTCTTACATTCTTCTGATTTCCGTGGAAAC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114012 57 -  2193130 TGAATGCATATG---------TTCTACTTTGCTCCTTTCTTACGTTCTTCTGAGTTCCCTGGAAAC
i nomLeu3.chrUn_GL397460_1  I 5860 C 0
s macNem1.NW_012014910v1     2121271 57 + 10377808 TGAAGGCACAAG---------TTCTACTTTGCTCCTTTCTTGCCTTCTTCTGATTTCCCTGGAAAC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2031752 57 -  8458610 TGAAGGCACAAG---------TTCTACTTTGCTCCTTTCTTGCCTTCTTCTGATTTCCCTGGAAAC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64965261 57 + 75148670 TGAAGGCACAAG---------TTCTACTTTGCTCCTTTCTTACCTTCTTCTGATTTCCCTGGAAAC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2222613 57 +  4244037 TGAAGGCACAAG---------TTCTACTTTGCTCCTTTCTTACCTTCTTCTGATTTCCCTGGAAAC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2222101 57 +  4569836 TGAAGGCACAAG---------TTCTACTTTGCTCCTTTCTTACCTTCTTCTGATTTCCCTGGAAGC
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1866970 66 +  3513951 CGGATGAAAAAGAAAAAGTTCTGCCACTTTTCCTATTTCTTAAATTCTACTGATTTCCCTGGAAAT
i saiBol1.JH378271          C 0 I 18609
s cebCap1.NW_016107543v1       21044 57 -  4077172 AGAATGCACAAG---------TTCTACTTTTCTCCTTTCTTACATTCTTCTGATTTCCCTGAAAAC
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       14863 57 -    94492 TGAATGCACAAG---------TTCTGCTTTTCTCTTTTCTTACATTCTTCTGATTTCCCTGGAAAC
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            630260 57 -   852752 TGAATGCACAGT---------TTTTTCTACATTTTCTCCTCAAATATATCTGTTCCCCATGCAAAC
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22862032 5356 + 28711273 I
e macFas5.chr16             28084434 252 - 80997621 I
e rheMac8.chr16             30174026 358 - 77216781 I

a score=7796.000000
s hg38.chr17_JH159148v1_alt    67253 3 +    88070 ACA
s panTro5.chr17             16372278 3 + 83181570 ACC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16283428 3 + 83442489 ACA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4124108 3 +  4267968 AGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114069 3 -  2193130 ACA
i nomLeu3.chrUn_GL397460_1  C 0 I 5
s macNem1.NW_012014910v1     2121328 3 + 10377808 AAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2031809 3 -  8458610 ACA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64965318 3 + 75148670 AAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2222670 3 +  4244037 ACA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2222158 3 +  4569836 AAA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1885645 3 +  3513951 ACG
i saiBol1.JH378271          I 18609 C 0
s cebCap1.NW_016107543v1       21101 3 -  4077172 ACA
i cebCap1.NW_016107543v1    C 0 C 0
s dasNov3.JH570468            630317 3 -   852752 ATG
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1       14920 0 -    94492 C
e otoGar3.GL873537          22862032 5356 + 28711273 I
e macFas5.chr16             28084434 252 - 80997621 I
e rheMac8.chr16             30174026 358 - 77216781 I

a score=37692.000000
s hg38.chr17_JH159148v1_alt    67256 8 +    88070 AGTTTTTC
s panTro5.chr17             16372281 7 + 83181570 -GTTTTCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16283431 8 + 83442489 AGTTTTTC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4124111 8 +  4267968 AGTTTTTC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114077 8 -  2193130 AGTTTTTA
i nomLeu3.chrUn_GL397460_1  I 5 C 0
s macFas5.chr16             28084686 8 - 80997621 aGTTTTCA
i macFas5.chr16             I 252 C 0
s macNem1.NW_012014910v1     2121331 8 + 10377808 AGTTTTTT
i macNem1.NW_012014910v1    C 0 I 9780
s cerAty1.NW_012006043v1     2031812 8 -  8458610 AGTTTTTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64965321 8 + 75148670 AGTTTTTC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2222673 8 +  4244037 AGTTTTTT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2222161 8 +  4569836 AGTTTTTT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1885648 8 +  3513951 AGATTTTA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       21104 8 -  4077172 AGATTTTA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       14920 3 -    94492 -----ACA
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            630320 8 -   852752 AACTTTTA
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22862032 5356 + 28711273 I
e rheMac8.chr16             30174026 358 - 77216781 I

a score=237422.000000
s hg38.chr17_JH159148v1_alt    67264 28 +    88070 GTTTCTTTAGATGGTTCATATTATCCTC
s panTro5.chr17             16372288 28 + 83181570 GTTTCTTTAGATGCCTCATATTGGTCTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16283439 28 + 83442489 ATTTCTTTAGATGGTTCATATTATCCTC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4124119 28 +  4267968 ATTTCTTTAGATTCTTCATATTGGCCTC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114085 28 -  2193130 GTTTCTTTAGATGCCTCGTATTGGTCTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30174384 28 - 77216781 GTTTCTTTAGATGCCTCATATTGGTCTT
i rheMac8.chr16             I 358 I 2
s macFas5.chr16             28084694 28 - 80997621 GTTTCTTTAGATGCCTCATATTGGTCTT
i macFas5.chr16             C 0 I 2
s macNem1.NW_012014910v1     2131119 28 + 10377808 GTTTCTTTAGATGCCTCATATTGGTCTT
i macNem1.NW_012014910v1    I 9780 I 2
s cerAty1.NW_012006043v1     2031820 28 -  8458610 GTTTCTTTAGATGCTTCATATTGGCCTC
i cerAty1.NW_012006043v1    C 0 I 6074
s chlSab2.chr16             64965329 28 + 75148670 GTTTCTTTAGATGCTTCATATTGGCCTC
i chlSab2.chr16             C 0 I 5882
s manLeu1.NW_012106252v1     2222681 28 +  4244037 GTTTCTTTAGATGCTTCATATTGGCCTC
i manLeu1.NW_012106252v1    C 0 I 2
s colAng1.NW_012122154v1     2222169 28 +  4569836 GTTTCTTTAGATGCTTCATATTGGCCTC
i colAng1.NW_012122154v1    C 0 I 2
s saiBol1.JH378271           1885656 28 +  3513951 GTTTCTGTAGTTGCTTCATGTTGGTCTC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       21112 28 -  4077172 GTTTCTTTGGATGCTTCATGTTGGCCTC
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       14923 28 -    94492 GTTTCTTTAGATGCTTCATGTTGGCCTC
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            630328 28 -   852752 TTTCCCTCAGATACTTCCTTTTTACCTC
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22862032 5356 + 28711273 I

a score=14006.000000
s hg38.chr17_JH159148v1_alt    67292 6 +    88070 -AAAAAC
s panTro5.chr17             16372316 6 + 83181570 -ACAAAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16283467 6 + 83442489 -AAAAAC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4124147 6 +  4267968 -ACAAAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114113 6 -  2193130 -ACAAAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30174414 4 - 77216781 ---AAAA
i rheMac8.chr16             I 2 C 0
s macFas5.chr16             28084724 4 - 80997621 ---AAAA
i macFas5.chr16             I 2 C 0
s macNem1.NW_012014910v1     2131149 4 + 10377808 ---AAAA
i macNem1.NW_012014910v1    I 2 C 0
s cerAty1.NW_012006043v1     2037922 4 -  8458610 ---AAAA
i cerAty1.NW_012006043v1    I 6074 C 0
s chlSab2.chr16             64971239 4 + 75148670 ---AAAA
i chlSab2.chr16             I 5882 C 0
s manLeu1.NW_012106252v1     2222711 4 +  4244037 ---AAAA
i manLeu1.NW_012106252v1    I 2 C 0
s colAng1.NW_012122154v1     2222199 4 +  4569836 ---AAAA
i colAng1.NW_012122154v1    I 2 I 20011
s saiBol1.JH378271           1885684 6 +  3513951 -ACAAAA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       21140 6 -  4077172 -ACAAAA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       14951 6 -    94492 -ACAAAA
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            630356 7 -   852752 AAGAAAA
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22862032 5356 + 28711273 I

a score=16037.000000
s hg38.chr17_JH159148v1_alt    67298 2 +    88070 TG
s panTro5.chr17             16372322 2 + 83181570 TT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16283473 2 + 83442489 TG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4124153 2 +  4267968 TG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114119 2 -  2193130 TG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30174418 2 - 77216781 TG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28084728 2 - 80997621 TG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2131153 2 + 10377808 TG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2037926 2 -  8458610 TG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64971243 2 + 75148670 TG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2222715 2 +  4244037 TG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2242214 2 +  4569836 TG
i colAng1.NW_012122154v1    I 20011 C 0
s saiBol1.JH378271           1885690 2 +  3513951 TG
i saiBol1.JH378271          C 0 T 18656
s cebCap1.NW_016107543v1       21146 2 -  4077172 TG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       14957 2 -    94492 TG
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            630363 2 -   852752 CA
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22862032 5356 + 28711273 I

a score=466815.000000
s hg38.chr17_JH159148v1_alt    67300 62 +    88070 CAGAAGGTTGTTTCATTCCCTTCCTTCTCATAGAGATAATGGATTGTGCCAAGTCTTACATG
s panTro5.chr17             16372324 62 + 83181570 CAGAAGGTTCTTTCATTCCCTTCCTTGGTTTAGAGATTATGGATTGTGCCACGTCTTACATA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16283475 62 + 83442489 CAGAAGGTTGTTTCATTCCCTTCCTTCTCACAGAGATAATGGATTGTGCCAAGTCTTACATG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4124155 62 +  4267968 TGGAAGGTTGTTTTATTCCCTTCCTTAGCTCAGAGATTATGGGTTGTGCCAAGTCTTACATG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114121 62 -  2193130 AAGAAGGTTCTTTCATTCCCTTCCTTGGTTCAGAGATTATGGATTGTGCCAAGTCTTACATA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30174420 62 - 77216781 CAGAAGGTTATTTCATTCCCTTCCTTGGTTCAGAGATTATGGATTGTGTCAAGTCTTACATA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28084730 62 - 80997621 CAGAAGGTTATTTCATTCCCTTCCTTGGTTCAGAGATTATGGATTGTGTCAAGTCTTACATA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2131155 62 + 10377808 CAGAAGGTTATTTCATTCCCTTCCTTGGTTCAGAGATTATGGATTGTGTCAAGTCTTACATA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2037928 62 -  8458610 CAGAAGGTTATTTCGTTCCCTTCCTTGGTTCAGAGATTACGGATTGTGTCAAGTCTTACATA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64971245 62 + 75148670 CAGAAGGTTATTTCATTCCCTTCCTTGGTTCAGAGATTATGGATTGTGTCAAGTCTTACATA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2222717 60 +  4244037 T-GAAGGTTGTTTTATTCCC-TCCTCGGCTCAGAGATTACGGATTGTGCCAAGTCGTACACG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2242216 62 +  4569836 CAGAAGGTTATTTCATTCCCTTCCTTGGTTCAGAGATTAAGGATTGTGTCAAGTCTTACATA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1867036 33 +  3513951 CAGA-----------------------------AGATTATGGTTTGTGCAAAGCCATACATG
i saiBol1.JH378271          T 18656 I 18679
s cebCap1.NW_016107543v1       21148 62 -  4077172 CAGACGGTTGTTTTATTCCCTTCCTTGGCTCAGAGATTATGGATTGTGCCAAGTCTTACATG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       14959 62 -    94492 CAGAAGGTTGTTTTATTCCCTTCCTTGGCTCAGAGATCATGGATTGTGCCAAGTCTTACACG
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            630365 62 -   852752 GAGGTGGTGGTTTAGTTTCCTTAGATGGTGTAGAGATTGTGAATAGATCAAAGTCACACATG
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22862032 5356 + 28711273 I

a score=2649337.000000
s hg38.chr17_JH159148v1_alt    67362 329 +    88070 CCCATTGCACACTTTCTCAATTCCCAGCTTTGTTC-TTACTTAATTTTCCTCATAACGTCTCAATTATGGGACAAATTTTC------TTAATGTGGCATAAGGTACAGTCTGTGTTTTACAAGGAATAACTTAGTTTCATTTACTTCGTCAATAGGTGTTCAGGAGATGGAGGCCATATAACAATTTTATTTACATGATATCGA-GAATAAGTTCCTTCAGATGAGACTCTCTC--ATGAGTCCACAATGAATTCTCAAGCAT-TTTTTGATGCAGATGAATTGAATGAATGACTGGTCAGAGGATGAGACAAAAAGAGATCCCTGCTTTCAGGGCAGCC
s panTro5.chr17             16372386 331 + 83181570 CCCATTGCATACTTTCTCAATTCCCAGCTTAATTCCTTACTTAATTTTCCTCATAACATTTCGATTAGGGGACAAATTCTC------TTAATGTGGCATAAGGTGTGGTCTGTATTTTACAAGGAATAACTTAGTTTCATTGACTTTGTCAACAGGTATTCAGGAGGGGGAGGCCGTGTAAGAATTTTATTTACATCATACTGA-GAATAAGTCACTTCAGATGAGACTCTCTCTTATGATGATATGATGAATTCTCAAGCATCTTTTTGATGCGTATGAGTTGAATGATTGGCTGGTCAGAGGCTGAGACAAAAAGA--TCCCTGCATTCAGGGCAGCC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16283537 329 + 83442489 CCCATTGCACACTTTCTCAATTCCCAGCTTTGTTC-TTACTTAATTTTCCTCATAACGTTTCAATTATGGGACAAATTTTC------TTAATGTGGCATAAGGTACAGTCTGTATTTTACAAGGAATAACTTAGTTTCATTTACTTCGTCAATAGGTGTTCAGGAGATAGAGGCTACATAACAATTTTATTTACATGATATCGA-GAATAAGTTCCTTCAGATGAGACTCTCTC--ATGAGTCCACAATGAATTCTCAAGCAT-TTTTTGATGCAGATGAATTGAATGAATGGCTGGTCAGAGGATGAGACAAAAAGAGATCCCTGCTTTCAGGGCAGCC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4124217 328 +  4267968 CCCATTGCATAGTTTCTCAATTCCCAGCTTTGTTC-TTACATAATTTTACTCATAACACTTCAAGTA-GGGACAAATTGTC------TTAACGTGGCATAATGTATGGTGTGTATTTTACAAGGAATAACTTAGTTTCATTTACTTTGTCAATAGGTATTCAGGAGACCGATGCTGTATAAGAATTTTATTTGCATCACACTGA-GAATAAGTTTCTTCAGATGAGGCTCTATCTCCTGAGTCCACAATAAATTCTCAAGCAT-TTTTTGATGCAGATGAATTGAATGAATGGCTGGTCAGAGGCTCAGACAAAAAGA--TCTCTGCATTCAGGGCAGCC
i gorGor5.CYUI01015385v1    C 0 I 5769
s nomLeu3.chrUn_GL397460_1   2114183 331 -  2193130 CCCATTGCATACTTTCTCAATTCCCAGCTTTATTCCTTACTTAATTTTCCTCATAACATTTCGATTAGGGGACAAATTGTC------TTAATGTGGCATAAGGTATGGTCTGTATTTTACAAGGAATAACTTAGTTTCATTTTCTTTTTCAATAGGTATTCAGGAGAGGGAGGCCGTGTAAGAATTTTATTTACATCATACTGA-GAATAAGTCACTTCAGATGAGACTCTCTCTTATGATGATATAATGAATTCTCAAGCATCTTTTTGATGCAGATGAATTGAATGATTGGCTGGTCAAAGGCTGAGATAAAAAGA--TCCCTGCATTCAGGGCAGCC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30174482 331 - 77216781 CCCATTGCATACTTTCTCAATTCCCAGCTTAATTCCTTACTTAATTTTCCTCATAACATTTCGATTAGGGGACAAATTGTT------TTAATGTGGCATAAGGTATGGTCTGTATTTTACAAGGAATAACTTAGTTTCATTTACTTTGTCATTAGGTATTCAGGAGATGGAGGCCATATAAGAATTTTATTTACATGATACTGA-GAATGAGTCACTTCAGACGAGACTCTCTCTCATGATGATATAATGAATTCTCAAGCATCTTTCCAATGCAGATGAATTGAATGATTGGCTAGTCAGAGGCTGAGATAAAAAGA--TCCCTGCATTCAAGGCAGCC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28084792 331 - 80997621 CCCATTGCATACTTTCTCAATTCCCAGCTTAATTCCTTACTTAATTTTCCTCATAACATTTCGATTAGGGGACAAATTGTT------TTAATGTGGCATAAGGTATGGTCTGTATTTTACAAGGAATAACTTAGTTTCATTTACTTTGTCATTAGGTATTCAGGAGATGGAGGCCATATAAGAATTTTATTTACATGATACTGA-GAATGAGTCACTTCAGACGAGACTCTCTCTCATGATGATATAATGAATTCTCAAGCATCTTTCCAATGCAGATGAATTGAATGATTGGCTAGTCAGAGGCTGAGATAAAAAGA--TCCCTGCATTCAAGGCAGCC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2131217 331 + 10377808 CCCATTGCATACTTTCTCAATTCCCAGCTTAATTCCTTACTTAATTTTCCTCATAACATTTCTATTAGGGGACAAATTGTT------TTAATGTGGCATAAGGTATGGTCTGTATTTTACAAGGAATAACTTAGTTTCATTTACTTTGTCATTAGGTATTCAGGAGATGGAGGCCATATAAGAATTTTATTTACATGATACTGA-GAATGAGTCACTTCAGACGAGACTCTCTCTCATGATGATATAATGAATTCTCAAGCATCTTTCCAATGCAGATGAATTGAATGATTGGCTAGTCAGAGGCTGAGATAAAAAGA--TCCCTGCATTCAAGGCAGCC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2037990 331 -  8458610 CCCATTGCATACTTTCTCAATTCCCAGCTTAATTCCTTACTTAATTTTCCTCATAACATTTCGATTAGGGGACAAATTGTC------TTAATGTGGCATAAGGTACAGTCTGTATTTTACAAGGAATAACTTAGTTTCGTTTACTTTGTCATTAGGTAGTCAGGAGATGGAGGCCATATAAGAATTTTATTTACATGATACTGA-GAATGAGTCACTTCAGATGAGAGTCTCTCTCATGATGATATAAAGTATTCTCAAGCATCTTTTCAATGCAGATGAATTGAATGATTGGCTGGTCAGAGGCTGAGAAAAAAAGA--TCCCTGCATTCAGGGCAGCC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64971307 331 + 75148670 CCCATTGCATACTTTCTCAATTCCCAGCTTAATTCCTTACTTAATTTTCCTCATAACATTTCGATTAGGGGACAAATTGTC------TTAACGTGGCATAAGGTATGGTCTGTATTTTACAAGGAATAACTTAGTTTCATTTACTTTGTCATTAGGTATTCAGGAGACAGAGGCCATATAAGAATTTTATTTACATGATACTAA-GATTGAGTCACTTCAGATGAGACTCTCTCTCATGATGATATAATGAATTCTCAAGCATCTTTTCAATGCAGATGAATTGAATGATTGGCTGGTCAGAGGCTGAGATAAAAAGA--TCTCTGCATTCAGGGCAGCC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2222777 328 +  4244037 CCCAGTGTGCAGTTTCTCAGTTCTCAGCTTTGTT-CTTAGTTAATTTTCCTCATAAGATTTCAAGTAGGGGACAAATTGTC------TTAATGTGGCATAATGTATGGTCTGTATTTTACAAGGAATAACTTAGTTTCATTTAATTTGTCAATAGGTATCCAGGAGA-GGGGGCCATATAAATATTTTATTTATATGATGCCAA-GAATAAATTTATTCAAATGAGACTCCCTCTTATGAGTCCACAATGAATTCTCAAGCAG-TTTTTGATGCAGGTGAATGGAATGAATGGCAGGTCAGAGGCTGAGATGAAAAGA--TCTCTGCATTCAGGGCAGCC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2242278 331 +  4569836 CCCATTGCATACTTTCTCAATTCCCAGCTTAATTCCTTACTTAATTTTCCTCATAACATTTCGATTAGGAGACAAATTGTC------TTAATGTGGCATAAGATATGGTCTGTATTTTACAAGGAATAACTTAGTTTCATTTACTTTGTCATTAGGTATTCAGGAGACGGAGGCCATATAAGAATTTTATTTACGTGATACTGA-GAATGAGTCACTTCAGATGAGACTCTCTCTCATGATGATATAATGAATTCTCAAGCATCTTTTCAATGCAGATGAATTGAATGATTGGCTGGTCAGAGGCTAAGATAAAAAGA--TCCCTGCATTCAGGGCAGCC
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1885748 331 +  3513951 CCCATTGCATAGCTTCTCAATTCCCAGCTTTGTTC-TTACTTAATTTTCATCATAACATTTCAATTAGGGAACAGATAGTC------TTCATGTGGCATAATGTATGGTCTGTATTTTACAAGGAATAACTTAGTTTTATTTACTTTGACAATTGATATTCAGGAGATGGGGGCCATATAAGAATTTCATTTACATGATACCAA-GAATAAGTCCCTTCAGATGAGACTCTCTCTCGTGAAGACACAATGAATTCTCATGCAT-TTTTTGGTGCAGATGAATTGAATGAATGGCTCGTCAAAGGCTGAGACAAGAAGAGATCCCTGCATTCAGGGCAGCT
i saiBol1.JH378271          I 18679 C 0
s cebCap1.NW_016107543v1       21210 331 -  4077172 TCCATTGCGTAGTTTCTCAATTCCCAGCTTTGTTT-TTACTTAATTTTTCTTGTAACATTTCAATTAGTGGACAGATACTC------TTCATGTGGCATAATGTATGGTCTGTATTTTACAAGGAATAACTTAGTTTTATTTACTTTTTCAATAGATATTCAGGAGATGGGGGCCATATAAGAATTTTATTTACATGATACCAA-GAATAAGTCCCTTCAGATAAGACTCTCTCTCATGAGGACACAATGAATTCTCAAGCAT-TTTTTGATGTAGATGAATTGAATGAATGGCTCATCAGAGGCTGAGACAAAAAGAGGTCCCCAGATTCAGGGCAGCT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       15021 330 -    94492 CCCATTGCATAGTTTCTCAATTCCCAGCTTTGTTC-TTACTTAATTTTCCTCATAACGTTTCAATTAGGGGACAGATAGTC------TTCATGTGGCATAATGTATGGTCTGTATTTTACAAGGAGTAACTTAGTTTTATTTAATTTGTCAATAGATATTCAGAAGATGGGAGCCATATAAGAATTTTATCTATATGATACCAA-GAATAAGTCCCTTCAGATGAGAGTCTCTCTCATGCGGACACAATGAATTCTCAAGCA--TTTTTGATGCAGATGAATTGAATGAATGGCTCGTCAGAGGCTGAAACAAAAAGAGATCCCTGCATTCAGGGCAGCT
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            630427 316 -   852752 TCCATTGTACTGTTTTCAGTTGTCAAGGTTTGTCC-TTACTTAATTTTCATAGTAATACTTAGATCA--AGACAAATTGACTGGAAGTTGGTGGAGCACAATATCTTGTCT----------AGGATCAGATTTATTTATTTCCTTTTATCCATTGACATGTGCTAGA---AGGTCACAC-TGAATT---TTTGCATGAGACCAAGGAGCAGGTCCCTTTAGATGAGCATTCCTAACTTCAC-ACAATGTGGAGTCTCAAAA---TATGTGATGCTGGTGAATGGCATCCATGTGTGGAAAGAGCCTGAGACAAAAACCTGTCCCTGTGTTAAGGGGATCT
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22862032 5356 + 28711273 I

a score=877260.000000
s hg38.chr17_JH159148v1_alt    67691 110 +    88070 ATTAAATGCAGTCCCTGCTGCCATATCATGCAGCTGTTGCTCACTGAGGTGTGGGAAAC--TTATTTGGGAAAACT---TTTTTGTGAACAAAAATGTTATCTGCAAATATAAGA
s panTro5.chr17             16372717 109 + 83181570 ATTAAATGCAGTCCCTGCTGCCATGTCGTGCAGCTGTTGCTCACTGAGGTGTGGGAAAAAATAATTTGGGA---TT---TTTTTGTGAATAAAAATATTATCTGCAAATATGAGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16283866 110 + 83442489 ATTAAATGCAGTCCCTGCTGCCATATCATGCAGCTGTTGCTCACTGAGGTGTGGGAAAT--TTATTTGGGAAAACT---TTTTTGTGAACAAAAATGTTATCTGCAAATATAAGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4130314 110 +  4267968 ATTAAATGCAGTCCCTGCTGCCATGTCATGCAGCTGTTGCTCACTGAGGTGTGGGAAAAAATAATTTGGGA--TTT---TTTTTGTGAATAAAAATATTATCTGCAAATAGGAGA
i gorGor5.CYUI01015385v1    I 5769 C 0
s nomLeu3.chrUn_GL397460_1   2114514 108 -  2193130 ATTAAATGCAGTCCCTGCTGCCATGTCATGCAGCTGCTGCTCACTGAGGTGTGGGAAAA--TAATTTGGGA-ATTT---TTTGTGTGAA-AAAAATATTATCGGCAAATATGAGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30174813 108 - 77216781 ATTAAATGCAGTCCCTGCTGCCATATTATGCAGCTGTTGCTCACTGAGGTGTGGGAAAT--TAATTTGGGA--ATT---CTTTTGTGAACAAGAATATTATCTGCAAATATGAGA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28085123 108 - 80997621 ATTAAATGCAGTCCCTGCTGCCATATTATGCAGCTGTTGCTCACTGAGGTGTGGGAAAT--TAATTTGGGA--ATT---CTTTTGTGAACAAGAATATTATCTGCAAATATGAGA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2131548 108 + 10377808 ATTAAATGCAGTCCCTGCTGCCATATTATGCAGCTGTTGCTCACTGAGGTGTGGGAAAT--TAATTTGGGA--ATT---CTTTTGTGAACAAGAATATTATCTGCAAATATGAGA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2038321 111 -  8458610 ATTAAATGCAGTCCCTGCTGCCATATTATGCAGCTGTTGCTCACTGAGGTGCGGGAAAC--TAAGTTGGAA--ATTAAGTTTGTGTGAACAAAAATGTTATCTGCAAATATAAGT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64971638 111 + 75148670 ATTAACTGCAGTCCCTGCTGCCATATTATGCAGCTGTTGCTCACTGAGGTGTGGGAAAC--TAAGTTGGAA--ATGAAGTTTGTGTGAACAAAAATGTTATCTGCAAATATAAGT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2223105 111 +  4244037 ATTAAATGCAGTCCCTGCTGCCATATCATGCAACTGTTGCTCACTGAGGTGTGGGAAAC--TAAGTAGGAA--ATTAAGTTTGTGTGAACAAAAATGTTATCTGCAAATATAAGT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2242609 108 +  4569836 ATTAAATGCAGTCCCTGCTGCCCTATTATGCAGCTGTTGCTCACTGAGGTGTGGGAAAC--TAATTTGGGA--ATC---TTTTTGTGAACAAAAATATTATCTGCAAATATGAGA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1886079 108 +  3513951 GTCAAACGCAGTCCCTGCTGCCATATCATGCAGTGGTTGCTCACTAGAGTGTGGGAAAT--GAATTTGGGA--ATA---TTTTTGTGAACAAAAATGTTATCTTCAAATATGAAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       21541 108 -  4077172 ATTAAATGCAGTCCCTGCTGCCATATCATGTAGCAGTTGCTCACTGGAGAGTGGGAAAT--GAATTTGGGA--ATA---CTTTTGTGAACAAAAATGTTATCTGCAAATATGAAG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       15351 108 -    94492 ATTAAATGCAGTCCCTGCTGCCATATCATGCAGTGGTTGCTCACTGAAGTGTGGGAAAT--GAATTTGGGA--ATA---TTTTTGTGAACAAAAATGTTATCTGCAAATATGAAG
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            630743 106 -   852752 GTTACATATAGCCACTGATATCTT-TCACATCACTGTTGATCACTGAGGTGTTGGAAAC--TGATTTGGAA--AGA---GCTTTGTATGTGGAAGCATTAACTG-ATATACAAGA
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22862032 5356 + 28711273 I

a score=72658.000000
s hg38.chr17_JH159148v1_alt    67801 8 +    88070 GATCATTC
s panTro5.chr17             16372826 8 + 83181570 GATTATTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16283976 8 + 83442489 GATCATTC
i panPan2.chr17             C 0 I 11031
s gorGor5.CYUI01015385v1     4130424 8 +  4267968 GATTATTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114622 8 -  2193130 GATTATTC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30174921 8 - 77216781 GATTATTC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28085231 8 - 80997621 GATTATTC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2131656 8 + 10377808 GATTATTC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2038432 8 -  8458610 GATTAATC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64971749 8 + 75148670 GATTAATC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2223216 8 +  4244037 GATTAATC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2242717 8 +  4569836 GATTATTC
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1886187 8 +  3513951 GATTATTC
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       21649 8 -  4077172 GATTATTC
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       15459 8 -    94492 GATTATTC
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22867388 8 + 28711273 gatttttg
i otoGar3.GL873537          I 5356 C 0
s dasNov3.JH570468            630849 7 -   852752 -GTTATTT
i dasNov3.JH570468          C 0 C 0

a score=1175784.000000
s hg38.chr17_JH159148v1_alt    67809 135 +    88070 CTCTCATTGTTAAA--TAAACTC--AAGTGCATGT---CTTGCTAGTGC-TGACT-TCCAATGTCATTTCTA-C-TATGTTGAGAGTTAAATGTAAGTGTCCTTGGGCAGAAAGAgaggacctcagcttggatcagaatctgtcct
s panTro5.chr17             16372834 135 + 83181570 CTCTCATTGTTAAA--TAAACTC--AAGTGCATGT---CTTGCTAGTGC-TGACT-TCCAATGTCATTTCTA-C-TATGTTGAGAGTTAAATGTAAGTGTCCTTTGGCAGAAAGAgaggacctcagcttggatcagaatctgtcct
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16295015 135 + 83442489 CTCTCATTGTTAAA--TAAACTC--AAGTGCATGT---CTTGCTAGTGC-TGACT-TCCAATGTCATTTCTA-C-TATGTTGAGAGTTAAATGTAAGTGTCctttggcagaaagagaggacctcagcttggatcagaatctgtcct
i panPan2.chr17             I 11031 C 0
s gorGor5.CYUI01015385v1     4130432 134 +  4267968 CTCTCATTGTTAAA--TAAACTC--AAGTGCATGT---CTTGCTAGTGC-TGACT-TCCAATGTCATTTCTA-C-TATGTTGAGAGTTAAAAGTAAGTGTCctt-ggcagaaagagaggaccccagcttggatcagaatctgtcct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114630 134 -  2193130 CTCTCATTGTTACA--TAAACTC--AAGTGCATGC---CTTGCTAGTGC-TGACT-TCCAATGTCATCTC-A-C-TATATTGAGAGTTAAATGCAAGTGTCCTTGGGCAGAAAGggaagacctcagcttggatcagaatctgtcct
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30174929 134 - 77216781 CTCTCATTGTTAAA--TAAACTC--AAGTGCATGT---CTTGCTATTGC-TGACT-TCCAATGTCA-TTCCA-C-TATATTGAGAATTAAATGTAAGTGTCCTTGGCCAGAAAGAGAGGACCTCAGCTTGGATCAGAATCTGTCCC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28085239 134 - 80997621 CTCTCATTGTTAAA--TAAACTC--AAGTGCATGT---CTTGCTATTGC-TGACT-TCCAATGTCA-TTCCA-C-TATATTGAGAATTAAATGTAAGTGTCCTTGGCCAGAAAGAGAGGACCTCAGCTTGGATCAGAATCTGTCCC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2131664 134 + 10377808 CTCTCATTGTTAAA--TAAACTC--AAGTGCATGT---CTTGCTATTGC-TGACT-TCCAATGTCA-TTCCA-C-TATATTGAGAATTAAATGTAAGTGTCCTTGGCCAGAAAGAgaggacctcagcttggatcagaatctgtccc
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2038440 134 -  8458610 CTCTCATTGTTAAA--CAAACTC--AAGTGCATGT---CTTGCTAGTGC-TGACT-TCCAATGTCA-TTCCA-C-TATATTGAGAATTAAATGTAAGTGCCCTTGGCCAGAAAGAGAGGAACTCAGCTTGGATCAGAATCTGTCCT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64971757 135 + 75148670 CTCTCATTGTTAAA--GAAACTC--AAGTGCATGT---CTTGCTAGTGT-TGACT-TCCAATGTCATTTCTA-C-TATATTGAGAGTTAAATGTAAGTGTCCTTGGACAGAAAGAGAGGACCTCAGCTTGGATCAGAATCTGTCCT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2223224 133 +  4244037 CTCTCATTGTTAAA--GAAACTC--AAGTGCATGT---CTTGCTAGTGC-TGACT-TCCAATGTCATTTCTA-C-TATATTGAGAGTTAAATGTAAGTGTCGTTGG-TAGAAAGAGAGGACCTCAGCTTGGATCAGAATCTGTCC-
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2242725 134 +  4569836 CTTTCATTGTTAAA--TAAACTC--AAGTGCATGT---CTTGCTAGTGC-TGACT-TCCAATGTCA-TTCCA-C-TATATTGAGAATTAAATGTAAGCGTCCTTGGCCAGAAAGAGAGAACCTCAGCTTGGATCAGAATCTGTCCT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1886195 135 +  3513951 CTCTTATTGTTAAA--CAAACTT--AAGTGCATGT---TTTGCTAGTGC-TGACT-TTCAAGGTCATTTCTA-C-CTTATTGAGAGTTAAATGTAATTGTCGTTGGGCAGAAGGAGAGGACCTCATCTTGGATCAGACTCTGTCCT
i saiBol1.JH378271          C 0 I 315
s cebCap1.NW_016107543v1       21657 135 -  4077172 CTCTTACTGTTAAG--CAAACTC--CAGTGCATGT---CTTGCTAGTGC-TGACT-TTCAAGGTCATTTCTA-C-CTTATTGAGAGTTAAATGTAATTGTCCTTGGACAGAAGGAGAGGACCTCATCTTGGATCAGACTCTGTCCT
i cebCap1.NW_016107543v1    C 0 I 318
s aotNan1.NW_018505111v1       15467 135 -    94492 CTCTTATCGTTAAA--CAAACTC--AAGTGCATGT---CTTGCTAGTGC-TGACT-TTCAAAGTCATTTCTA-C-CTTATTGAGAGTTAAATGTAATTGTCCTTGGGCAGAAGGAGAGGACCTCATCTTGAATCAGACTCTGTCCT
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22867396 131 + 28711273 ttgttgttgTT--------GCTC--AAGTGCACAG---CTCACCAGTTC-TCATTCTCCAGTAGCAGTTCTAGT-TGCTTTGAGATGGACATGCAGGTGCCCTTGAGCAGACACCGCAGACCCAGTCCTGGATGTCAGTGTGACTA
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            630856 140 -   852752 ----CTTTGCTAAAATGGAATTCAAAAGTCCTTGTTCCCCTGCTAATGCTTGGTC-TGCACCACCATTTCTC-CTTACCTTGAGATGGAAGTGTGAGAGACCTCCACCAGAGCTAGAGGACCCAGTTCTGGATCTGAGTTTGTGCA
i dasNov3.JH570468          C 0 C 0

a score=12376.000000
s hg38.chr17_JH159148v1_alt    67944 1 +    88070 t
s panTro5.chr17             16372969 1 + 83181570 t
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16295150 1 + 83442489 t
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4130566 1 +  4267968 t
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114764 1 -  2193130 t
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30175063 1 - 77216781 T
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28085373 1 - 80997621 T
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2131798 1 + 10377808 t
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2038574 1 -  8458610 T
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64971892 1 + 75148670 T
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2223357 1 +  4244037 T
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2242859 1 +  4569836 T
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1886645 1 +  3513951 T
i saiBol1.JH378271          I 315 C 0
s cebCap1.NW_016107543v1       22110 1 -  4077172 T
i cebCap1.NW_016107543v1    I 318 C 0
s aotNan1.NW_018505111v1       15602 1 -    94492 T
i aotNan1.NW_018505111v1    C 0 I 317
s otoGar3.GL873537          22867527 1 + 28711273 T
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            630996 1 -   852752 T
i dasNov3.JH570468          C 0 C 0

a score=35331.000000
s hg38.chr17_JH159148v1_alt    67945 7 +    88070 tattagc
s panTro5.chr17             16372970 7 + 83181570 tattagc
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16295151 7 + 83442489 tattagc
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4130567 7 +  4267968 tattagc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114765 7 -  2193130 ttttagc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30175064 7 - 77216781 TATTAGC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28085374 7 - 80997621 TATTAGC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2131799 7 + 10377808 tattagc
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2038575 7 -  8458610 TATTAGC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64971893 7 + 75148670 TATTAGC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2223358 7 +  4244037 TATTAGC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2242860 7 +  4569836 TATTAGG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1886646 6 +  3513951 TATTAC-
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       22111 6 -  4077172 TATTGC-
i cebCap1.NW_016107543v1    C 0 C 0
s otoGar3.GL873537          22867528 7 + 28711273 TATTCAC
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            630997 7 -   852752 TTCTACA
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1       15603 317 -    94492 I

a score=690187.000000
s hg38.chr17_JH159148v1_alt    67952 83 +    88070 tacataacatcacatattaattttttttcaggtg--aaaaatgaaggtaataatgcatgaccacctgttttgagaatcaaattgg
s panTro5.chr17             16372977 83 + 83181570 tacataacatcacatattaattttttttcaggtg--aaaaatgaaggtaataatacatgaccacctgttttgagaatcaaattgg
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16295158 83 + 83442489 tacataacatcacatattaattttttttcaggtg--aaaaatgaaggtaataatacattaccacctgttttgagaatcaaattgg
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4130574 82 +  4267968 tatataacatcacatattaa-tttttttcaggtg--aaaaatgaaggtaataatacatgaccacctgttttgagaatcaaattgg
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114772 82 -  2193130 tacatgacaacacacattac-attttttcaggtg--aaaaatgaaggtaataatacatgatcatctgttttgagaatcaaattgg
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30175071 83 - 77216781 TACATAACATCGCATATTAAATATTTTTCAGGTG--AAAAATGAAGGCAATAATAGATGACCATCTGTTTTGAGAATCAAATTGG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28085381 83 - 80997621 TACATAACATCGCATATTAAATTTTTTTCAGGTG--AAAAATGAAGGCAATAATAGATGACCATCTGTTTTGAGAATCAAATTGG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2131806 83 + 10377808 tacataacatcgcatattaaatttttttcaggtg--aaaaatgaaggcaataatagatgaccatctgttttgagaatcaaattgg
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2038582 83 -  8458610 TACATAACATCATATATTAAATTTTTTTCAGGTG--AAAAAGGAAGGTAATAATAGATGACCATCTGTTTTGAGAATCAAATTGG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64971900 83 + 75148670 TACATAACATCACACATTAAATTTTTTTCAGGTG--AAAAATGAAGGTAATAATAGATGACCATCTGTTTTGAGAATCAAATTGG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2223365 84 +  4244037 TACATATCATCACACATTAAATTATTCTCAGCTG-AAAAAATGAAGGTAACGATACATAACCAACTGCTTTGAGAATCAAGTTGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2242867 83 +  4569836 TACATAACATCACATATTAATTTTTTTTCAGGTG--AAAAATGAAGGTAATAACAGATGACCATCTGTTTTGAGAATCAAATTGG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1886652 83 +  3513951 TACATAACATCACACATTAAATttttctcagctg--aaaaatgaaggtaataatccatgaccatctgttctgaggatcaaattaa
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       22117 83 -  4077172 TACATAATATCACATATTAAATTGttctcagctg--aaaaatgaaggtaataatccatgaccatctgttctgaggatcaaattaa
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       15920 83 -    94492 TACATAACATCACACATTAAATTGttctcagctg--aaaaatgaaggtaataatccatgaccatctgttctgcagatcaaattaa
i aotNan1.NW_018505111v1    I 317 C 0
s otoGar3.GL873537          22867535 85 + 28711273 TACAAGACATTATGCTATGAAGTTTTCTCATCTGAAAAAAATGATATTAACAATACAAGGGTAACTGTATTGAAAAGAAAAATGG
i otoGar3.GL873537          C 0 I 7349
s dasNov3.JH570468            631004 80 -   852752 TATGTGACTACACAAGTCAA--TTTTCTAATCTG--AAGAGAGG-GGCAATATTTACTAGGTGGTTTTTAAGAGGCAGAGAATAG
i dasNov3.JH570468          C 0 C 0

a score=829778.000000
s hg38.chr17_JH159148v1_alt    68035 92 +    88070 ataataactatggtatgtgaTATGTGTGTAAATCCC-ATATCAGGAGTGCTTTCAAATAAAACAAA-ACACTATATGAGATGAGGATGGTTCAG
s panTro5.chr17             16373060 92 + 83181570 ataatacctatggtatgtgaTATGTGTGTAAATCCC-ATATCAGGAGTGCTTTCAAATAAAACAAA-ACACCATATGAGATGAGGATGGTTCAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16295241 92 + 83442489 ataatacctatGGTATGTGATATGTGTGTAAATCCC-ATATCAGGAGTGCTTTCAAATAAAACAAA-ACACCATATGAGATGAGGATGGTTCAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4130656 92 +  4267968 ataatacctatggtatgtgataagtgtgtaaaTCCC-ATATCAGGAATGCTTTCAAATAAAACAAA-ACACTATATGAGACGAGGATGGTTCAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114854 92 -  2193130 ataatacctatggtatgtgaTATGTGTGTAAATCCC-ATATCAGGAATGCTTTCAAATAAAACAAA-ACACCATATGAAATGAGGATGATTCAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30175154 92 - 77216781 ATAATACCTGTGGTATGTGATACGTATGTAAATCCC-ATATCAGGAATGCTTTCAAATAAAACAAA-ACACCATATGAGATGAAGATGGTTCAG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28085464 92 - 80997621 ATAATACCTATGGTATGTGATATGTATGTAAATCCC-ATATCAGGAATGCTTTCAAATAAAACAAA-ACACCATATGAGATGAAGATGGTTCAG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2131889 92 + 10377808 ataatacctatggtatgtgatacgtatgtaaaTCCC-ATATCAGGAATGCTTTCAAATAAAACAAA-ACACCATATGAGATGAAGATGGTTCAG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2038665 92 -  8458610 ATAATAATTATGGTATGTGATACGTATGTAAATCCC-ATATCACAAATGCTTTCAAATAAAACAAA-ACACCATATGAGATGAAGATGGTTCAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64971983 92 + 75148670 ATAATAATTATGGTATGTGATACGTATGTAAATCCT-ATATCAGAAATGCTTTCAAATAAAACAAA-ACACCATATGAGATGAAGATGGTTCAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2223449 92 +  4244037 ATAATACCTATGGTATATGATATGTGTGTAAATCCC-ATATCAGAAATTCTTTCAAATAAAACAAA-ACACCTTATGAGATGAGGATACTTCAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2242950 92 +  4569836 ATAATACCTATGGTATGTGATACATATGTAAATCCC-GTATCAGGAATGCTTTCAAATAAAACAAA-ACACCATATGAGATAAAGATGGTTCAG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1886735 90 +  3513951 ataatacatatgGTATGT--TATGTGTGTAAACCCC-ATATCAGGAATGCTTTAAAATAAAACAAA-ATACCATATGAGATGAGGATGGTTCAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       22200 92 -  4077172 ataatacatatgGTATGTTATATGTGTGTAAATCCC-ATATCAGGAATGCTTTAAAATAAAACAAA-ACACCATATGAGATGAGGATGGTTCAG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       16003 92 -    94492 ataatacatatgGTATGTGACATGTGTGTAAATCCC-ATATCAGGAATGCTTTAAAATAAAATAAA-ACACCATATGAGATGAGGATGGTTCAG
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            631084 94 -   852752 ATAATGACTATGGTAAGGGATTTGTATAAAAATCCCTATGTCAGAAGGGCCATACAACAAGAGGGGCACATGATATGGATGAATAATGGTAGAG
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22867620 7349 + 28711273 I

a score=9096.000000
s hg38.chr17_JH159148v1_alt    68127 1 +    88070 A
s panTro5.chr17             16373152 1 + 83181570 A
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16295333 1 + 83442489 A
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4130748 1 +  4267968 A
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114946 1 -  2193130 A
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30175246 1 - 77216781 A
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28085556 1 - 80997621 A
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2131981 1 + 10377808 A
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2038757 1 -  8458610 C
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972075 1 + 75148670 A
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2223541 1 +  4244037 A
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2243042 1 +  4569836 A
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1886825 1 +  3513951 A
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       22292 1 -  4077172 A
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       16095 1 -    94492 A
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22874969 1 + 28711273 A
i otoGar3.GL873537          I 7349 I 24219
s dasNov3.JH570468            631178 1 -   852752 A
i dasNov3.JH570468          C 0 C 0

a score=1724703.000000
s hg38.chr17_JH159148v1_alt    68128 199 +    88070 ATTTATTCAGAAACATATAGGTAAGGATTTCTGCTACCAGGGACACAACACAAATTTATCATGAAAAGAAGAAAGA-AGGATACAAGAACGA---------TGAGGAGGATATTGAAAACAAA---------A-----AAAA--GATTGCAAAGATCATCGATCAGTTGCAGAAACCTA------------------------------AATTCCTTAGAAGCAGGGAATGAAGCTCTTGACTTTAGAGTCAAAG
s panTro5.chr17             16373153 200 + 83181570 ATTTATTCAGAAACATATAGGTAAGGATCTCTGCTACCAGGGACACAACCCAAATTTATCATGAAAAGAAGAAGGA-AGGATACGAGAACCA---------TGAGGAGGATATTGAAAACAAA---------A-----AAAA-AGATTGCAAAGATCATCGATCAGTTGCAGAAACCTA------------------------------AATTCCTTAGAAGCAGGGAATGAAGCTCTTGACTTTAGAGTCAAAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16295334 199 + 83442489 ATTTATTCAGAAACATATAGGTAAGGATCTCTGCTACCAGGGACACAACCCAAATTTATCATGAAAAGAAGAAGGA-AGGATACAAGAACCA---------TGAGGAGGATATTGAAAACAAA---------A-----AAAA--GATTGCAAAGATCATCGATCAGTTGCAGAAACCTA------------------------------AATTCCTTAGAAGCAGGGAATGAAGCTCTTGACTTTAGAGTCAAAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4130749 201 +  4267968 ATTTATTCAGAAACATACAGGTAAGGATCTCTGCTACCAGGGACACAACCCAAATTTATCATGAAAAGAAGAAAGA-AGGATACAAGAACGA---------TGAGGAGGATATTGAAAACAAA---------A-----AAAAAAGATTGCAAAGATCATTGATCAGTTGCAGAAGCCTA------------------------------AATTCCTCAGAAGCAGAGAATGAAGCTCTTGACTTTAGAGTCAAAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2114947 205 -  2193130 GTTTATTCAGAAACATATAGGTAAGAATCTCTGCTACCAGGGACACAACCCAAATTTATCATGAAAAGAAG---GA-AGGATACAAGAATGA---------TGAGGAGGATATTGAaaacaaacaaacaaaca-----aaaa--aaTTGCAAAGATTATTGATCAGTCGCAGAAGCCTA------------------------------AATTCCTTAGAAGCAGAGAACGAAGCTCATGACTTTAGAGTCAAAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30175247 199 - 77216781 GTTTATTCAGAAACATAGAGTTAAGAATCTCTGCTACCAGGAACACAACCCAAAGTTATCATGAAAAGAAGAAAGA-AGGATAGAAGAACCA---------TGAAGAGGATATTGAAAACAAA---------T-----ATAC--GATTGCAAAGATTATTGCTCAGTTGCAGAAGCCTA------------------------------AATTCCTTAGAAGCAGAGAATGAAGCTCATGACTTTAGAGTCACAG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28085557 199 - 80997621 GTTTATTCAGAAACATAGAGTTAAGAATCTCTGCTACCAGGAACACAACCCAAAGTTATCATGAAAAGAAGAAAGA-AGGATAGAAGAACCA---------TGAAGAGGATATTGAAAACAAA---------T-----ATAC--GATTGCAAAGATTATTGCTCAGTTGCAGAAGCCTA------------------------------AATTCCTTAGAAGCAGAGAATGAAGCTCATGACTTTAGAGTCACAG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2131982 199 + 10377808 GTTTATTCAGAAACATAGAGTTAAGAATCTCTGCTACCAGGAACACAACCCAAAGTTATCATGAAAAGAAGAAAGA-AGGATAGAAGAACCA---------TGAAGAGGATATTGAAAACAAA---------T-----ATAT--GATTGCAAGGATTATTGCTCAGTTGCAGAAGCCTA------------------------------AATTCCTTAGAAGCAGAGAATGAAGCTCATGACTTTAGAGTCACAG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2038758 208 -  8458610 GTTTATTCAGAAACATATAGTTAAGAATCTCTGCTACCAGGAACACAACCCAAAGTTATCATGAAAAGAAGAAAGA-AGGATAGAAGAACCAAAGAAGGATAGAAGAGGATATTGAAAACAAA---------T-----ATAT--GATTGCAAAGATTATTGATCAGTTGCAGAAGCCTA------------------------------AATTCCTTAGAAGCAGAGAATGAAGCTCATGACTTTAGAGTCACAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972076 197 + 75148670 GTTTATTCAGAAACATATAGTTAAGAATCTCTGCTACCAGGAACACAACCC--AGTTATCATGAAAAGAAGAAAGA-AGGATAGAAGAACCA---------TGAAGAGGATATTGAAAACAAA---------T-----ATAT--GATTGCAAAGATTATTGCTCAGTTGCAGAAGCCTA------------------------------AATTCCTTAGAAGCAGAGAATGAAGCTCATGACTTTAGAGTCACAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2223542 198 +  4244037 GTTTATTCAGAATCATATAGCTAAGAACTTCTGCTACCAGGGACATAACCCAAAGTTATCATGAACACAAGAAAGA-AGGATACAAGAAACA---------TAAGGAGGATATTGAAAACAAA---------------AAAA--GATTGCAAAGATTATTGATCAATTGCAGAAACCTA------------------------------AATTCCTTAGAAGCAGAGAACGAAGCTCTTGAATATTGAGTCAAAG
i manLeu1.NW_012106252v1    C 0 I 2560
s colAng1.NW_012122154v1     2243043 199 +  4569836 GTTTATTCAGAAACATATAGTTAAGAATCTCTGCTACCAGGAACACAACCCAAAGTTATCATGAAAAGAAGAAAGG-AGGATAGAAGAACCA---------TGAAGAGGATATCAAAAACAAA---------T-----ATAT--GATTGCAAAGATTATTGCTCAGTTGCAGAAGCCTA------------------------------AATTCCTTAGAAGCAGAGAATGAAGCTCATGACTTTAGAGTCACAG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1886826 199 +  3513951 GTTTATTCAGAAACATGTAGGCAAGAATCTCTGCTACCAGGAATATGACCCAAAGTTACCACAAAAAGAAGAAAGA-AAGATACAAGAACAA---------TGAGGAGGATACTGAAAACAAA---------A-----TTAT--GACTGCAAAGATTATGGATTAGTTTCAGAAACCTA------------------------------AATTTCTGAGAAACAGAGAATGAAGCTCTTGACTTTAGAGTCAAAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       22293 199 -  4077172 GTTTATTCAGAAACATGTAGGCAAGAATCTCTGCTACCAGGAACATGACCCAAAGTTATCATGAAAAGAAGAAAGA-AAGATACAAGAACAA---------TGAGGAGGATATTGAAGACAAA---------A-----TTAT--AACTGCAAAGATTATGGATCAGTTGCAGAAACCTA------------------------------AATTTCTGAGAAGCAGAGAATGAAGCTCTTGACTTTAGAGTCAAAG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       16096 199 -    94492 GTTTATTCAGAAACATGTAGGTAAGAGTCTCTGCTACCAGGAACATAGTCCAAAGTTATCATGAAAAGAAGAAAGA-AAGATACAAGAACAA---------TGAGGAGGATATTGAAAACAAA---------A-----TTAT--GATCGCAAAGATTATGGATTATTTGCAGAAACCTA------------------------------AATTTCTGAGAAGCAGAGAATGAAGCTCTTGACTTTAGAGTCAAAG
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22899189 187 + 28711273 ATTTATTAGGAAATAAACAGGGGAGACTTTTCAAAACACGGAAAACAATTTAAAACGGTTATAAAGGGGAAAAGGGTAGGGTACGAGAA------------TAAGGAATACATGGAGAAAAAA---------ATTCACTTAT--CATTGGGAAG----------AGTTA-AGAAGTCAT------------------------------AGGTTTTTGTCTGCTGAGTTTGGGGGC----GGCTTAGAGTGATAG
i otoGar3.GL873537          I 24219 I 17
s dasNov3.JH570468            631179 223 -   852752 ATTTATTTAGAAACATATAGATAAGACTCCTTGCCTCTAGGGAGACAACTCAAAGTTATCATGAAAACAAGAAAAC-ATGGCACAAGGGTCA---------T---GGGTATATTAAAAATAAA---------A--------T--GATTAGGTAGGTTATAGATCAATCACAGAAACCCATGGAAAGAGTTATGAGCACTTGTTTGCTTCAGTTACTTGGAGTTAGTGGGTGAATTTCTTGACTTCAGAGTGAAAG
i dasNov3.JH570468          C 0 C 0

a score=3547904.000000
s hg38.chr17_JH159148v1_alt    68327 383 +    88070 CTGAGACCATGACTCAAACTTGAGAACAGATGAAGCTGGCACATGATC-----------CACAAGGTGTAAGGAAAAAGAGAATCAGGATGAAGTATTCTGCCCTCCCTCAAGCAGATTTCCAAGATTTTAAACATGTAGAGAATTCATAA--AAATTTGGGTGAGAGC-ATGGTGGCTGTCAGCAGC------AAATTAAATTAGTCCCCCAAAAGATGAGTCAGTTGAGCAGAAATTTGTTGTG-----TGAGGATGGTGGTTCTCT--TGGAACGTGATCAGCAGCAAGAAGGCTGGCAGCAGCTGGACACA------------------CAGGTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCACGGCTGGCAGCAGTTGGAGCCACAGCTCTGGTT
s panTro5.chr17             16373353 383 + 83181570 CTGAGACCATGACTCAAACTTGAGAACAGATGAAGCTGGCACATGATC-----------CACAAGGTGTAAGGAAAAAGAGAATCAAGATGAAGTATTCTGCCATCCCTCAAGCAGATTCCCAAGATTTTAAACATGTAGAGAATTCATAA--AAATTTGGGTGAGAGC-ATGGTGGCTGTCAGCAGC------AAATTAAATTAGTTTCCCAAAAGATAAGTCAGTTGAGCAGAAATTTGTTGTG-----TGAGGATGGTGGTTCTCT--TGGAATGTGATCAGCAGCAAGAAGGCTGGCAACAGCTGGACACA------------------CAGGTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGTGGCAGCAGGGCTGGCAGCAGCTGGAGCCACAGCTCTGGTT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16295533 383 + 83442489 CTGAGACCATGACTCAAACTTGAGAACAGATGAAGCTGGCACATGATC-----------CACAAGGTGTAAGGAAAAAGAGAATCAGGATGAAGTATTCTGCCATCCCTCAAGCAGATTCCCAAGATTTTAAACATGTAGAGAATTCATAA--AAATTTGGGTGAGAGC-ATGGTGGCTGTCAGCAGC------AAATTAAATTAGTTGCCCAAAAGATAAGTCAGTTGAGCAGAAATTTGTTGTG-----TGAGGATGGTGGTTCTCT--TGGAACGTGATCAGCAGCAAGAAGGCTGGCAACAGCTGGACACA------------------CAGGTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGTGGCAGCAGGGCTGGCAGCAGCTGGAGCCACAGCTCTGGTT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4130950 383 +  4267968 CTGAGACCATGACTCAAAATTGAGAACAGACGAAACTGGCACATGATC-----------CACAAGGTGTAAGGAAAAAGAGAATCAAGATGAAGTATTCTGCCCTCCCTCAAGTAGATTCCCAAGATTTTAAACATGTAGAGAATTCATAA--AAATTTGGGTGAGAGC-ATGGTGGCTGTCAGCAGC------AAATTAAATTAGTCCCCCAAAAGATGAGTCAGTTGAGCAGAAATTTGTCATG-----TGAGGATGGTGGTTCTCT--TGGAACGTGATCAGCAGCAAGAAGGCTGGCAGCAGCTGTACACA------------------CAGGTGGTCGGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAGGGCTGGCAGCAGCTGGAGCCACAGCTCTGGTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2115152 383 -  2193130 CTGAGACCATGACTCAAAATTGAGAACACACAAAGCTGGCACATGATC-----------CACAAGGTATAAGGAAAAACAGAATCAGGATGAAGTTTTCTGCTGTCCCTCAAGCAGATTCCCAAGATTTTAAACATGCAGAGAATTCATAA--AAATTTGGGTGACAGC-ATGGTGGCTGTCAGCAGC------AAATTAAATTAGTCCCCCAAAAAATAAGTCAGTTGAGCAGAAAGTTGTTGTG-----TGAGGATAGTGGTTCTCT--TGGGAGTTGATCAGCAGCAAGAAGGCTGGCAGCAGCTGGACACA------------------CAGGTGGGCTGGAAACAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAGGGCTGGCAGCAGCTGGAGCCACAGTTCTGGTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30175446 383 - 77216781 CTGAGACCATGACTCCAAATTGAGAGCACACGAAGCTGGCACATGATC-----------CACAAGGGGTAAGAAAAAAGAGAAACAGGATGAAGTATTCTGACATCCGTCTAGCAGATTCCCAAGATTTTAAACATACAGAGAATTCATAA--AAATTTGGGTGACAGC-ACGGTGGCTGTCAGCAGC------AAAGTAAATTAGTCCCCCAAAAGATCAGTCAGTGGGGCAGAAAGTTGTTGTG-----TGAGGACGGTGGTTGTCT--TGGGACTTGATCAGCAGCAAGAAGGCTGGCAGCAGCTGGACACA------------------CAGGTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAGGGCTGGCAGCAGCTGGATCCACAGCTCTGGTT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28085756 383 - 80997621 CTGAGACCATGACTCCAAATTGAGAGCACACGAAGCTGGCACATGATC-----------CACAAGGGGTAAGAAAAAAGAGAAACAGGATGAAGTATTCTGACATCCGTCTAGCAGATTCCCAAGATTTTAAACATACAGAGAATTCATAA--AAATTTGGGTGAGAGC-ACGGTGGCTGTCAGCAGC------AAAGTAAATTAGTCCCCCAAAAGATCAGTCAGTGGGGCAGAAAGTTGTTGTG-----TGAGGACGGTGGTTGTCT--TGGGACTTGATCAGCAGCAAGAAGGCTGGCAGCAGCTGGACACA------------------CAGGTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAGGGCTGGCAGCAGCTGGATCCACAGCTCTGGTT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2132181 383 + 10377808 CTGAGACCATGACTCCAAATTGAGAGCACACGAAGCTGGCACATGATC-----------CACAAGGGGTAAGAAAAAAGAGAAACAGGATGAAGTATTCTGACATCCATCTAGCAGATTCCCAAGATTTTAAACATACAGAGAATTCATAA--AAATTTGGGTGAGAGC-ACGGTGGCTGTCAGCAGC------AAAGTAAATTAGTCCCCCAAAAGATCAGTCAGTGGAGCAGAAAGTTGTTGTG-----TGAGGACGGTGGTTGTCT--TGGGACTTGATCAGCAGCAAGAAGGCTGGCAGCAGCTGGACACA------------------CAGGTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAGGGCTGGCAGCAGCTGGATCCATAGCTCTGGTT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2038966 383 -  8458610 CTGAGACCATGACTCCAGATTGAGAGCACACGAAGCTGGCACATGATC-----------CACAAGGGGTAAGAAAAAAGAGAAACAGGATGAAGTATTCTGACATCCATCTAGCAGATTCCCAAGATTTTAAACATGCAGAGAGTTCATAA--AAATGTGGGTGAGAGC-ACAGTGGCTGTCAGCAGC------AAAGTAAATTAGTCCCCCAAAAGATCAGTCAGTCGAGCAGAAAGTTGTTGTG-----TGAGGACGGTGGTTCTCT--TGGGACTTGATCAGCAGCAAGAAGGCTGGCAGCAGTTGGTCACA------------------CAGGTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAGGGCTGGCAGCAGCTGGATCCATAGCTCTGGTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972273 382 + 75148670 CTGAGACCGTGACTCCAGATTGAGAGCACACGAAGCTGGCACATGATC-----------CACAAGGGGTAAGAAAAAAGAGAAACAGGATGAAGTATTCTGACATCCGTCTAGCAGATT-CCAAGATTTTAAACATGCAGATAATCCATAA--AAATTTGGGTGAGAGC-ATGGTGGCTGTCAGCAGC------AAAGTAAATTAGTCCCCCAAAAGATCAGTCAGTTGAGCAGAAAGTTGCTGTG-----TGAGGACGGTGGTTCTCT--TGGGAGCTGATCAGCAGCAAGAAGGCTGGCAGCAGCTGGACACA------------------CAGGTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAGGGCTGGCAGCAGCTGGATCCATAGCTCTGGTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2226300 383 +  4244037 CTGAGACCATGACTCCAAATTGAGAACACACGAAGCTGGCACATGATC-----------CACAAGGTGGAAGGTAAAAGAGAATCAGGATGAAGTATTCTGCCCTCTCTCAAGCAGATTCCCAAGATTTTAAACATGCAGATAATTCATAA--AAATTTGGGTGAGAGC-ATGGTGGCTGTCAGCAGC------AAAGTAAATTAGTCCCCCAAAAGATAAGTCAATTGAGCAGAAGGTTCTTGTG-----TGAGGACGGTGGTTCTCT--TGGGAGTTGATCAACAGCAAGAAGGCTGGCAGCAGTTGGTCACA------------------CAGGTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAGGGCTGGCAGCAGCTGGATCCATAGCTCTGGTT
i manLeu1.NW_012106252v1    I 2560 C 0
s colAng1.NW_012122154v1     2243242 383 +  4569836 CTGAGACCATGACTCCAAATTGAGAGCACACGAAGCTGGCACATGATC-----------CACAAGGTGGAAGGAAAAAGAGAAACAGGATGAAGTATTCTGCCCTCCCTCCAGCAGAGTCCCAAGATTTTATACATGCAGAGAATTCATAA--AAATTTGGGTGAGAGC-ACGGTGGCTGTCAGCAGC------AAAGTAAATTAGTCCCCCAAAAGATAAGTCAGTTGAGCAGAAAGTTGTTGTG-----TGAGGACGGTGGTTCTCT--TGGGACTTGATCAGCAGCAAGAAGGCTGGCAGCAGCTGGACACA------------------CAGGTGGGCTGGAAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAGGGCTGGCAGCAGCTGGAGCCACAGCTCTGGTT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1887025 383 +  3513951 CTGAGACCATGACTCCAAACTGAGCACACAGGAACCTGGCACATGATC-----------CACAAGGTGTAAGGAGAAAGAGAATCAGGATGAAGTACTCTGCCCTCCCTCGAGCTGAATCACCAGATTTTAAACATGGAGAGAATTCATAA--AAATGTGGGTGAGAGC-ATGGTGGCAGTCAGCAGC------AAAGTAAATTAGTTCCCCAAAAGATAAGTCAGTTGAGCAGAAGGCTGTTGTG-----TGAGGATGGTGATTCTCT--TGGGAGTTGATCAGCAGCAGGAAGGCTGGCAGCAGCTGGTCACA------------------CAGGTGGGCTGGCAGCAGGTGGTCCTACAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAGGGCTGGCAGCAGCTGGATCCACAGCTCTGGTT
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       22492 383 -  4077172 CTGAGACCATGACTCCAAACTGAAGACACAGAAACCTGGCACATGATC-----------CACAAGGTGTAAGGAAAAACAGAATCAGGATGAAGTACTCTGCCTTCCCTCAAGCTGATTCAAAAGATTTTAAACATGGAGAGAATTCATAA--AAATTTGGGTGAGAGC-ATGGTGGCGGTCAGCAGC------AAAGTAAATTAGTTCCCCAAAAGATAAGTCAGTTGAGCAGAAGGCTGTTGTG-----TGAGGATGGTGGTTTTCT--TGGGAGTTGATCAGCAGCAAGAAGGCTGGCAGCAGCTGGACACA------------------CAGGTGGGCTGGCAGCAGGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAGGGCTGGCAGCAGCTGGATCCACAGCTCTGGTT
i cebCap1.NW_016107543v1    C 0 T 12225
s aotNan1.NW_018505111v1       16295 383 -    94492 CTGAGACCATAACTCCAAACTGAGAACACAGGAAGCTGTCACGTGATC-----------GCCAAGGTGTAAGGAAAAAGAGAATCAGGATGAAGTATTCTGCCTTCCCTCATGCTGATTCACAAGATTTTAAACATGGAGAGAATTCATAA--AAATGTGGGTGAGAGC-ATGGTGGCAATCAGCAGC------AAAGTAAATTAGTTCCCGGAAAGACAAGTCAGTTGAGCAGAAGGCTGTTGTG-----TGAGGATGGTGGTTCTCT--TGGGAGTTGATCAGCAGCAAGAAGGCTGGCAGCAGGTGGTCACA------------------CAGGTGGGCCGGCAGCAGGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGCAGGGCTGGCAGCAGCTGGATCCACAGCTCTGGTT
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22899393 289 + 28711273 GTGAAAACATTAGTGAAGATGAAGAACAGATGAAGTAGAC-CAAGATTTGGAGCTAGTGCTCAACAGATAAAGAG-GAGAGAAGT-GGATAAAACATGCTGCCCTCCATCAGGCAGACACTTGAGACCCTTTATAACAAGATGATCCAAAC--ATAGTTTGATGATGGC--------------------------------------------AAAGCT-------TGGAGTGTGATTTTGTTGTAGAACCTGGGTTGGGTGATGCCACAGTGGAATGTTGCCTTCAGCAAGAGTGTTGA-----------------------------------------------------------------------------------TCAGCAGCAGGAAGGCTGGCAGCAGCTGGATCCACAGCCCAGGTT
i otoGar3.GL873537          I 17 C 0
s dasNov3.JH570468            631402 401 -   852752 CTGAGGACATTAAGTCA---TGTGACTATGAGAAGC-AATACATGATC-----------CAGAAGACATGAGGAAGAAGGTAATCAAGGTGAAATAGTCTGCACTCCATCAAATGGATTCACAAGCTTTTAAACATACAGATAA---ATAACTCCATTTTGTTGAGAGTGAAGCTGGGTATCAGTAAAGTCTAGGCAGTGATTTTGTCCCAGGAGTGACGGGTCAGTTGA-TAGAAGGCTGGTCTG-----TGCACTTGGTGGTT-TTT--GGTGAGTTGATCAGCAGCACAAAGGCTGACAGCAACTGGACACACAGCAAGGGCTGCTGCAGCAGCTGGGGTGGCAGCAGGTGGTTCTACAGCAGGTGGTCTGACAGCAGGATGGGCGGCAGCAAGGCTGGCAACAGGTGGATCTGCAGCTCTGGGG
i dasNov3.JH570468          C 0 C 0

a score=1276156.000000
s hg38.chr17_JH159148v1_alt    68710 129 +    88070 TAGGCAACCAGGCAGGCAGACAGTCGTGGGGTAGTAGCAGGTTCTTCTGCAGTACACAGGTGCA------------------------------------------CAGGAGCTGCTCTGGCCACAGCTGGACCCACAGCTGGTTTGGCCACAGCAGCTGGACCCACAGCA
s panTro5.chr17             16373736 117 + 83181570 TAGGCAACCAGGCAGGCAGACATTCGTGGGGTAGTAGCAGGTTCTTCTGCAGTACACAGGTGTA------------------------------------------CAGGAGCTGCTCTGGCCACAGCTGG------------TTTGGCCACAGCAGCTGGACCCACAGCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16295916 129 + 83442489 GAGGCAACCAGGCAGGCAGACAGTCGTGGGGTAGTAGCAGGTTCTTCTGCAGTACACAGGTGCA------------------------------------------CAGGAGCTGCTCTGGCCACAGCTGGACCCACAGCTGGTTTGGCCACAGCAGCTGAACCCACAGCA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4131333 129 +  4267968 TAGGCAACCAGGCAGGCAGACAGTCGTGGGGTAGTAGCAGGTTCTTCTGCAGTACACAGGTGCA------------------------------------------CAGGAGCTGCTCTGGCCACAGCTGGACCCACAGCTGGTTTGGCCACAGCAGCTGGACCCACAGCA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2115535 129 -  2193130 TAGGCAACCAGGCAGGCAGACAGTCGTGGGGTAATAGCAGGTTCTTCTGCAGTACACAGGTGCA------------------------------------------CAGGAGCTGCTCTGGCAACAGCTGGACCCACAGCTGGTTTGGCCACAGCAGCTGGACCCACAGCA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30175829 129 - 77216781 TAGGCAACCAGGCAGGCAGACACATGTGGGGTGGTAGCAGGTTCTTCTGCAGTAGACAGGGGCA------------------------------------------CAGGAGCTGGTCTGGCCACAGCTGGACCCACAGCTGGTTTGGCCACAGCAGCTTGACCCACAGCA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28086139 129 - 80997621 TAGGCAACCAGGCAGGCAGACACATGTGGGGTGGTAGCAGGTTCTTCTGCAGTAGACAGGGGCA------------------------------------------CAGGAGCTGGTCTGGCCACAGCTGGACCCACAGCTGGTTTGGCCACAGCAGCTTGACCCACAGCA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2132564 129 + 10377808 TAGGCAACCAGGCAGGCAGACACTTGTGGGGTGGTAGCAGGTTCTTCTGCAGTAGACAGGTGCA------------------------------------------CAGGAGCTGGTCTGGCCACAGCTGGACCCACAGCTGGTTTGGCCACAGCAGCTGGACCCACAGCA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2039349 129 -  8458610 TAGGCAACCAGGCAGGCAGACACACGTGGGGTGATAGCAGGTCCTCCTGCAGTAGACAGGTGCA------------------------------------------CAGGAGCTGGTCTGGCCACAGCTGGACCCACAGCTGGTTTGGCCACAGCAGCTGGACCCACAGCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972655 129 + 75148670 TAGGCAACCAGGCAGGCAGACACATGTAGGGTGGTAGCAGGTTCTTCTGCAGTAGACAGGTGCA------------------------------------------CAGGAGCTGGTCTGGCCACAGCAGGACCCACAGCTGGTTTGGCCACAGCAGCTGGACCCACAGCA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2226683 129 +  4244037 TAGGCAACCAGGCAGGCAGACACATGTGGGATGGTAGCAGGTTCTTCTGCAGTAGACAGGTGCA------------------------------------------CAGGAGCTGATCTGGCCACAGCTGGACCCACAGCTGGTTTGGCCACAGCAGCTGGACCCACAGCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2243625 129 +  4569836 TAGGCAACCAGGCAGGCAGACACATGTGGGGTGGTAGCAGGTTCTTCTGCAGTAGACAGGTGCA------------------------------------------CAGGAGCTGGTCTGGCCACAGCTGGACCCACAGCTAGTTTGGCCACAGCAGCTGGACCCACAGCA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1887408 129 +  3513951 TAGGCAACCAGGCAGGCAGACACACGTGGGGTGGTAGCAGGTTCTCGTGCAGTACACAGGTGCA------------------------------------------CAGGAGCTGGTCTGGCCACAGCTGGACCCACAGCTGGTTTGGCCACAGCAGCTGGACCCACAGCA
i saiBol1.JH378271          C 0 I 15242
s cebCap1.NW_016107543v1       10650 117 -  4077172 CAGGCAACCAGGCAGGCAGACACACGTGGGGTGGTAGCAGGTTCTACTGCAGTATACAGGTACA------------------------------------------CAGGAGCTGGTCTGG------------CCACAGCTGGTTTGGCCACAGCAGCTGGACCCACAGCA
i cebCap1.NW_016107543v1    T 12225 C 0
s aotNan1.NW_018505111v1       16678 117 -    94492 TAGGCAACCAGGCAGGCAGACACACGTGGGGTGATAGCAGGTTCTCCTGCAGTACACAGGTGCA------------------------------------------CAGGAGCTGGTCTGG------------CCATAGCTGGTTTGGCCACAGCAGCTGGACCCGCAGCA
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22899682  99 + 28711273 CAGACAACCAGGCAGGCAGACGCAGGTGGGCTGGTAGCAGGTCCTGGTGCAGTAGACAGGTGCA------------------------------------------CAGCTGCTGGGCTGG------------------------------CAGCAGGAGGTGCCACAGCA
i otoGar3.GL873537          C 0 I 1
s dasNov3.JH570468            631803 171 -   852752 TTGGCAGCCAGGCAGGCAGCAGCATGTTGGGTGGTAGCAGGTTCTCCTGCAGTACACGGGGCCACTGCAAGCTGGCTGGCAGCAGGTTGTGTAGCAGCAACTGGGGCGGCAGCAAGGCTGACAGCTGCTGGACCCACCGCAGGTTTGGCCATAGGAACTGGACCCACAGCA
i dasNov3.JH570468          C 0 C 0

a score=24121.000000
s hg38.chr17_JH159148v1_alt    68839 3 +    88070 GGT
s panTro5.chr17             16373853 3 + 83181570 GGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296045 3 + 83442489 GAT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4131462 3 +  4267968 GGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2115664 3 -  2193130 GGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30175958 3 - 77216781 GGT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28086268 3 - 80997621 GGT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2132693 3 + 10377808 GGT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2039478 3 -  8458610 GGT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972784 3 + 75148670 GGT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2226812 3 +  4244037 GGT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2243754 3 +  4569836 GTT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1902779 3 +  3513951 GGT
i saiBol1.JH378271          I 15242 I 159
s cebCap1.NW_016107543v1       10767 3 -  4077172 GGT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       16795 3 -    94492 GGT
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22899782 2 + 28711273 GA-
i otoGar3.GL873537          I 1 C 0
s dasNov3.JH570468            631974 3 -   852752 GGT
i dasNov3.JH570468          C 0 C 0

a score=247430.000000
s hg38.chr17_JH159148v1_alt    68842 28 +    88070 GGGCTGGCAGCAGGTTGTGCTGCAG---------------------------CAG
s panTro5.chr17             16373856 28 + 83181570 GGGCTGGCAGCAGGGTGTGCTGCAG---------------------------CAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296048 28 + 83442489 GGGCTGGCAGCAGGGTGTGCTGCAG---------------------------CAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4131465 28 +  4267968 GGGCTGGCAGCAGGGTGTGCTGCAG---------------------------CAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2115667 28 -  2193130 GGGCTGGCAGCAGGGTGTGCTGCAG---------------------------CAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30175961 28 - 77216781 GGGCTGGCAGCAGGGTGTGCTGCAG---------------------------CAG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28086271 28 - 80997621 GGGCTGGCAGCAGGGTGTGCTGCAG---------------------------CAG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2132696 28 + 10377808 GGGCTGGCAGCAGGGTGTGCTGCAG---------------------------CAG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2039481 28 -  8458610 GGGCTGGCAGCAGGGTGTGCTGCAG---------------------------CAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972787 13 + 75148670 GGGCTGGCAGCAG------------------------------------------
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2226815 28 +  4244037 GGGCTGGCAGCAGGGTGTGCTGCAG---------------------------CAG
i manLeu1.NW_012106252v1    C 0 I 7686
s colAng1.NW_012122154v1     2243757 28 +  4569836 GGGCTGGCAGCAGGGTGTGCTGCAG---------------------------CAG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1902941 28 +  3513951 GGGCTGGCAGCAGGGTGTGCTGCTG---------------------------CAG
i saiBol1.JH378271          I 159 C 0
s cebCap1.NW_016107543v1       10770 28 -  4077172 GGGCTGGCAGCAGGATGTGCTACAG---------------------------CAG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       16798 55 -    94492 GGGCTGGCAGCAAGGCGTGCTGCAGCACGAAGGCTGGCAGCAGCTGGTCACACAG
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22899784 14 + 28711273 GGGACGGCAGCAGG-----------------------------------------
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            631977 28 -   852752 GGGCTGGCAGCAGGGAGTGGTGCAG---------------------------CAG
i dasNov3.JH570468          C 0 C 0

a score=7350.000000
s hg38.chr17_JH159148v1_alt    68870 1 +    88070 G
s panTro5.chr17             16373884 1 + 83181570 G
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296076 1 + 83442489 G
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4131493 1 +  4267968 G
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2115695 1 -  2193130 G
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30175989 1 - 77216781 G
i rheMac8.chr16             C 0 I 195
s macFas5.chr16             28086299 1 - 80997621 G
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2132724 1 + 10377808 G
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2039509 1 -  8458610 G
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2234529 1 +  4244037 G
i manLeu1.NW_012106252v1    I 7686 C 0
s colAng1.NW_012122154v1     2243785 1 +  4569836 G
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1902969 1 +  3513951 C
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       10798 1 -  4077172 G
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       16853 1 -    94492 G
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            632005 1 -   852752 G
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22899798 0 + 28711273 C
e chlSab2.chr16             64972800 0 + 75148670 C

a score=2545.000000
s hg38.chr17_JH159148v1_alt    68871 1 +    88070 A
s panTro5.chr17             16373885 1 + 83181570 A
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296077 1 + 83442489 A
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4131494 1 +  4267968 A
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2115696 1 -  2193130 A
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30176185 1 - 77216781 A
i rheMac8.chr16             I 195 C 0
s macFas5.chr16             28086300 1 - 80997621 A
i macFas5.chr16             C 0 I 195
s macNem1.NW_012014910v1     2132725 1 + 10377808 A
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2039510 1 -  8458610 A
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2234530 1 +  4244037 A
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2243786 1 +  4569836 A
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1902970 1 +  3513951 T
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       10799 1 -  4077172 A
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       16854 1 -    94492 T
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            632006 1 -   852752 G
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22899798 0 + 28711273 C
e chlSab2.chr16             64972800 0 + 75148670 C

a score=15690.000000
s hg38.chr17_JH159148v1_alt    68872 2 +    88070 AG
s panTro5.chr17             16373886 2 + 83181570 AG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296078 2 + 83442489 AG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4131495 2 +  4267968 AG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2115697 2 -  2193130 AG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30176186 2 - 77216781 AG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28086496 2 - 80997621 AG
i macFas5.chr16             I 195 C 0
s macNem1.NW_012014910v1     2132726 2 + 10377808 AG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2039511 2 -  8458610 AG
i cerAty1.NW_012006043v1    C 0 I 141
s manLeu1.NW_012106252v1     2234531 2 +  4244037 AG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2243787 2 +  4569836 GG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1902971 2 +  3513951 GG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       10800 2 -  4077172 AG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       16855 2 -    94492 GG
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            632007 2 -   852752 AG
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22899798 0 + 28711273 C
e chlSab2.chr16             64972800 0 + 75148670 C

a score=513432.000000
s hg38.chr17_JH159148v1_alt    68874  50 +    88070 GCTGGCAGCAGCT----------------------------------------------------------------------------------------------------GGTCACA---CAGGTGGGCTGGCAGCAGGTGGTCCTACAG
s panTro5.chr17             16373888  50 + 83181570 GCTGGTAGCAGCT----------------------------------------------------------------------------------------------------GGTCACA---CAGGTGGGCTGGCAGCAGGTGGTCCTACAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296080  50 + 83442489 GCTGGCAGCAGCT----------------------------------------------------------------------------------------------------GGTCACA---CAGGTGGGCTGGCAGCAGGTGATCCTGCAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4131497  50 +  4267968 GCTGGCAGCAGCT----------------------------------------------------------------------------------------------------GGTCAAA---CAGGTGGGCTGGCAGCAGGTGGTCCTGCAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2115699  50 -  2193130 GCTGGCAGCAGCT----------------------------------------------------------------------------------------------------GGTCACA---CAGGTGGGCTGGCAGCAGGTGGTCCTGCAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30176188  50 - 77216781 GCTGGCAGCAGCT----------------------------------------------------------------------------------------------------GGTCACA---CAGGTGGGCTGGCAGCAGGTGGTTCTACAG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28086498  50 - 80997621 GCTGGCAGCAGCT----------------------------------------------------------------------------------------------------GGTCACA---CAGGTGGGCTGGCAGCAGGTGGTTCTACAG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2132728  50 + 10377808 GCTGGCAGCAGCT----------------------------------------------------------------------------------------------------GGTCACA---CAGGTGGGCTGGCAGCAGGTGGTTCTACAG
i macNem1.NW_012014910v1    C 0 I 126
s cerAty1.NW_012006043v1     2039654  50 -  8458610 GCTGACAGCAGCT----------------------------------------------------------------------------------------------------GGTCACA---CAGGTGGGCTGGCAGCAGGTGGTCCTACAG
i cerAty1.NW_012006043v1    I 141 C 0
s chlSab2.chr16             64972800  39 + 75148670 -----------CT----------------------------------------------------------------------------------------------------GGTCACA---CAGGTGGGCTGGCAGCAGGTGGTCCTACAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2234533  50 +  4244037 GCTGGCAGCAGCT----------------------------------------------------------------------------------------------------GGTCACA---CAGGTGGGCTGGCAGCAGGTGGTCCTACAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2243789 150 +  4569836 GCTGGCAGCAGCTGGTCACACAGGTGGGCTGGCAGCAGGTGGTCCTACAGCAGGTGTTTTGACAACAAGTTGGGCGGTAGCAAGGCTGACAACAGCTGGACACACAGCCGGAGGGTCACA---CAGGTGGGCTGGCAGCAGGTGGTCCTACAG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1902973  50 +  3513951 TCTGGCAGCAGCT----------------------------------------------------------------------------------------------------GGTCACA---CAGGTGGGCTTCCAGCAGGTGGTCCTGCAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       10802  50 -  4077172 GCTGGCAGCAGCT----------------------------------------------------------------------------------------------------GGTCACA---CAGGTGGGCTGGCAGCAGGTGGTCCTGCAG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       16857  50 -    94492 GCTGGCAGCAGCT----------------------------------------------------------------------------------------------------GGTCACA---CAGGTGGGCTGGCAACAGGTGGTCCTGCAG
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22899798  53 + 28711273 GCTGGCAGCAGCT----------------------------------------------------------------------------------------------------GGACACACAGCAGCTGGGCTGGCAGCAGGGTGTGCTACAG
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            632009  50 -   852752 GCTGGCAGCAGCT----------------------------------------------------------------------------------------------------GGTCACA---AAGGTTGGCTGGCAGTAGGTGGTCCTACAG
i dasNov3.JH570468          C 0 C 0

a score=171548.000000
s hg38.chr17_JH159148v1_alt    68924 15 +    88070 CAGGTGTTTTGACAG
s panTro5.chr17             16373938 15 + 83181570 CAGGTGTTTTGACAG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296130 15 + 83442489 CAGGTGTTTTGACAG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4131547 15 +  4267968 CAGGTGTTTTGACAG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2115749 15 -  2193130 CAGGTGTTTTGACAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30176238 15 - 77216781 CAGGTGTTTTGACAG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28086548 15 - 80997621 CAGGTGTTTTGACAG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2132904 15 + 10377808 CAGGTGTTTTGACAG
i macNem1.NW_012014910v1    I 126 C 0
s cerAty1.NW_012006043v1     2039704 15 -  8458610 CAGGTGTTTTGACAG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972839 15 + 75148670 CAGGTGTTTTGACAG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2234583 15 +  4244037 CAGGTGTTTTGACAG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2243939 15 +  4569836 CAGGTGTTTTGACAG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1903023 15 +  3513951 CAGGTGTTTTGACAG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       10852 15 -  4077172 CAGGTGTTTTGACAG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       16907 15 -    94492 CAGGTGTTTTGACAG
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22899851 13 + 28711273 CAGGTG--GTGACAG
i otoGar3.GL873537          C 0 I 123
s dasNov3.JH570468            632059 15 -   852752 CAAGTGGTCTGACAA
i dasNov3.JH570468          C 0 C 0

a score=475900.000000
s hg38.chr17_JH159148v1_alt    68939 47 +    88070 CAAGTTGggcggcagcaaggctggcagcagctggacacacagcaggc
s panTro5.chr17             16373953 47 + 83181570 CAAGTTGGGCAGCAGCAAGGCTGGCAGCAGCTGGACACACAGCAGGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296145 47 + 83442489 CAAGCTGGGTGGCAGCAAGGCTGGCAGCAGCTAGACACACAGCAGGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4131562 47 +  4267968 CAAGTTGGGCGGCAGCAAGGCTGGCAGCAGCTGGACACACAGCAGGC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2115764 47 -  2193130 CAAGTTGGGTGACAGCAAGGCTGGCAACAGCTGGACACACAGCAGGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30176253 47 - 77216781 CAAGTTGGGCGGCAGCAAGGCTGGCAGCAGCTGGACACACAGCAGGT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28086563 47 - 80997621 CACGTTGGGCGGCAGCAAGGCTGGCAGCAGCTGGACACACAGCAGGT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2132919 47 + 10377808 CAAGTTGGGCGGCAGCAAGGCTGGCAGCAGCTGGACACACAGCAGGA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2039719 47 -  8458610 CAAGTTGGGCGGCAGCAAGGCTGGCAGCAGCTGGACACACAGCAGGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972854 47 + 75148670 CAAGTTGGGCGGCAACAAGGCTGGCAACAGCTGGACACACAGCAGGA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2234598 47 +  4244037 CAAGTTGGGCGGCAGCAAGGCTGGCAACAGCTAGACACACAGCAGGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2243954 47 +  4569836 CAAGTTGGGCGGCAGCAAGGCTGGCAACAGCTGGACACACAGCAGGA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1903038 47 +  3513951 CAAGTTGGGCGGCAGCAAGGCTGGCAGCAGCTGGACACACAGCAGGA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       10867 47 -  4077172 CAAGTTGGGCGGCAGCAAGGCTGGCAGCAGCTGGACACACAGCAGGA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       16922 47 -    94492 CAAGTTGGGCGGCAGCAAGGCTGGCAGCAGCTGGACACACAGCAGGA
i aotNan1.NW_018505111v1    C 0 C 0
s dasNov3.JH570468            632074 39 -   852752 CAGAGTGGGCGGCAGCAAGGCTGGCAGCAACTGGACCCA--------
i dasNov3.JH570468          C 0 C 0
e otoGar3.GL873537          22899864 123 + 28711273 I

a score=135420.000000
s hg38.chr17_JH159148v1_alt    68986 12 +    88070 gggctggcagca
s panTro5.chr17             16374000 12 + 83181570 GGGCTGGCAGCA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296192 12 + 83442489 GGGCTGGCAGCA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4131609 12 +  4267968 GGGCTGGCAGGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2115811 12 -  2193130 GGGCTGGCAGCA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30176300 12 - 77216781 GGGCTGGCAGCA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28086610 12 - 80997621 GGGCTGGCAGCA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2132966 12 + 10377808 GGGCTGGCAGCA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2039766 12 -  8458610 GGGCTGGCAGCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972901 12 + 75148670 GGGCTGGCAGCA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2234645 12 +  4244037 GGGCTGGCAGCA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2244001 12 +  4569836 GGGTTGGCAGCA
i colAng1.NW_012122154v1    C 0 I 1
s saiBol1.JH378271           1903085 12 +  3513951 GGGCTGGCAGCA
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       10914 12 -  4077172 GGGCTGGCAGCA
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       16969 12 -    94492 GGGCTGGCAGCA
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22899987 12 + 28711273 GGGCTGGCAGCA
i otoGar3.GL873537          I 123 C 0
e dasNov3.JH570468            632113  0 -   852752 C

a score=10500.000000
s hg38.chr17_JH159148v1_alt    68998 1 +    88070 g
s panTro5.chr17             16374012 1 + 83181570 G
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296204 1 + 83442489 G
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4131621 1 +  4267968 G
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2115823 1 -  2193130 G
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30176312 1 - 77216781 G
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28086622 1 - 80997621 G
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2132978 1 + 10377808 G
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2039778 1 -  8458610 G
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972913 1 + 75148670 G
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2234657 1 +  4244037 G
i manLeu1.NW_012106252v1    C 0 C 0
s saiBol1.JH378271           1903097 1 +  3513951 G
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       10926 1 -  4077172 G
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       16981 1 -    94492 G
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22899999 1 + 28711273 G
i otoGar3.GL873537          C 0 C 0
e dasNov3.JH570468            632113 0 -   852752 C
e colAng1.NW_012122154v1     2244013 1 +  4569836 I

a score=56010.000000
s hg38.chr17_JH159148v1_alt    68999 5 +    88070 gGTGT
s panTro5.chr17             16374013 5 + 83181570 GGTGT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296205 5 + 83442489 GGTGT
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4131622 5 +  4267968 GGTGT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2115824 5 -  2193130 GGTGC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30176313 5 - 77216781 GGTGT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28086623 5 - 80997621 GGTGT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2132979 5 + 10377808 GGTGT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2039779 5 -  8458610 GGTGT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972914 5 + 75148670 GGTGT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2234658 5 +  4244037 GGTGT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2244014 5 +  4569836 GGTGT
i colAng1.NW_012122154v1    I 1 C 0
s saiBol1.JH378271           1903098 5 +  3513951 GGTGT
i saiBol1.JH378271          C 0 T 15343
s cebCap1.NW_016107543v1       10927 5 -  4077172 GGTGT
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       16982 5 -    94492 GGTGT
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22900000 5 + 28711273 GGTGT
i otoGar3.GL873537          C 0 C 0
e dasNov3.JH570468            632113 0 -   852752 C

a score=289795.000000
s hg38.chr17_JH159148v1_alt    69004 31 +    88070 GCTGCT---------------------------GCAGGTGGTCACAGTGGTGGGCTTC
s panTro5.chr17             16374018 31 + 83181570 GCTGCT---------------------------GCAGGTGGTCACAGTGGTGGGCTTC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296210 31 + 83442489 GCTGCT---------------------------GCAGGTGGTCACAGTGGTGGGCTGC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4131627 31 +  4267968 GCTGCT---------------------------GCAGGTGGTCACAGTGGTGGGCTTC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2115829 31 -  2193130 GCTGCT---------------------------GCAGGTGGTCACAGTTGTGGGCTTC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30176318 31 - 77216781 GCTGCT---------------------------GCAGGTGGTCACACAGGTGGGCTTC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28086628 31 - 80997621 GCTGCT---------------------------GCAGGTGGTCACACAGGTGGGCTTC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2132984 31 + 10377808 GCTGCT---------------------------GCAGGTGGTCACACAGGTGGGCTTC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2039784 31 -  8458610 GCTGCT---------------------------GCAGGTGGTCACACAGGTGGGCTTC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972919 31 + 75148670 GCTGCT---------------------------GCAGGTGGTCACACAGGTGGGCTTC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2234663 31 +  4244037 GCTGCT---------------------------GCAGGTGGTCACACAGGTGGGCTTC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2244019 31 +  4569836 GCTGCT---------------------------GCAGGTGGTCACAGTGGTGGGCTTC
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1887760 31 +  3513951 GCTGCT---------------------------GCAGCTGGTCACACAGGTGGGCTTC
i saiBol1.JH378271          T 15343 C 0
s cebCap1.NW_016107543v1       10932 31 -  4077172 GCTGCT---------------------------GCAGCTGGTCACACAGGTGGGCTTC
i cebCap1.NW_016107543v1    C 0 I 12237
s aotNan1.NW_018505111v1       16987 58 -    94492 GCTGCTGCATGTGGTCACACAGGTGGGCTGGCAGCAGCTGGTCGCACAGGTGGGCTTC
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22900005 31 + 28711273 GCTGCA---------------------------GCAGGTGGTCTCACAGGTGGGCTGC
i otoGar3.GL873537          C 0 C 0
e dasNov3.JH570468            632113  0 -   852752 C

a score=4004978.000000
s hg38.chr17_JH159148v1_alt    69035 399 +    88070 CAGCAGGTGGTCCTGCAGCAGGTGGTCCTGCAGCAGGTAGGCTGACAGCAAGGGGAGCAACAGTGGGTCATGGTGTCAGGGGTGGAGGGTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGAATCTGATGACCCCTTGCAATCTGGACCTTTTATACATCTGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGTTGTTTACACTGTTTTCCATACTCCCTTTGCGA--TTGTCAAAGGGGAAGTTGTTTCTG--AAATCTTATGAATCTTTTGAAAGTAAGGGTTTAATCTGTTTCTTAATTGAGAATTACTCATAAAAACTTTGTTTCAGATAAAAGGAAGGCAGTCTCATCATCAGCATCATTCCTGCTCTGACCATCATCTGGTCATGTGA
s panTro5.chr17             16374049 398 + 83181570 CAGCAGGTGGTCCTGCAGCAGGTGGTCCTGCAGCATGTAGGCTGACAGCAAGGGGAGCAACAGTGGGTCATGGTGTCAGGGGTGGAGGGTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGAATCTGATGACCCCTTGCAATCTGGACCTTTTATACATCTGGCCTCCAA-TTTTCCACCAATCAGCAGGACTTTTCCTTGTTGTTGTTTACACTGTTTTCCATACTCCCTTTGCGA--TTGTCAAAGGGGAAGTTGTTTCTG--AAATCTTATGAATCTTTTGAAAGTAAGGGTTTAATCTGTTTTTTAATTGAGAATTACTCATAAAAACTTTGTTTCAGATAAAAGGAAGGCAGTCTCATCACCAGCATCATCCCTGCTCTGACCATCATCTGGTCATGTGA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296241 383 + 83442489 ---------------CAGCAGGTGGTCCTGCAGCATGTAGGCTGACAGCAAGGGGAGCAACAGTGGGTCATGGTGTCAGGGGTGGAGGGTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGAATCTGATGACCCCTTGCAATCTGGACCTTTTATACATCTGGCCTCCAA-TTTTCCACCAATCAGCAGGACTTTTCCTTGTTGTTGTTTACACTGTTTTCCATACTCCCTTTGCGA--TTGTCAAAGGGGAAGTTGTTTCTG--AAATCTTATGAATCTTTTGAAAGTAAGGGTTTAATCTGTTTTTTAATTGAGAATTACTCATAAAAACTTTGTTTCAGATAAAAGGAAGGCAGTCTCATCACCAGCATCATTCCTGCTCTGACCATCATCTGGTCATGTGA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4131658 397 +  4267968 CAGCAGGTGGTCCTGCAGCAGGTGGTCCTGCAGCATGTAGGCTGACAGCAAGGGCAGCAACAGTGGGTCATGG-GTCAGGGGTGGAGGGTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGAATCTGATGACCCCTTGCAATCTGGACCTTTTATACATCTGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGTTGTTTACACTGCTTTCCATACTCCCTTTGGGA--TTGTCAAAGGGGAAGTTG-TTCTG--AAATCTTATGAATCTTTTGAAAGTAAGGGTTTAATCTGTTTTTTAATTGAGAATTACTCATGAAAACTTTGTTTCAGATAAAAGGAAGGCAGTCTCATCATCAGCATCATTCCTGTTCTGACCATCATCTGGTCATGTGA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2115860 398 -  2193130 CAGCAGGTGGTCCTGCAGCAGGTGGTCCTGCAGCACGTAGGCTGACAGCAAGGGGAGCAACAGTGGGTCATGGTGTCAAGGGTGGAGGGTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGAATCTGATGACCCCTTGCAATCTGGACCTTTTATACACCTGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCCACTTATCTTGTTTTCCACAGTCCGTTTGTGA--TTTTCAAAGGGT-AGTTGTTTCTG--AAATCTTATGAATCTTTCGAAAGTAAGGGTTTAATCTGTTTTTTAATTGAGAATTACTCATAAAAACTTTGTTTCAGATAAAAGGAAGGCAGTCTCATCATCAGCATCATTCCTGCTCTGACCATCATCTGGTCATGTGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30176349 395 - 77216781 CAGCAGGTGGTCCTGCAGCAGGTGGTCCTGCAGCACGTAGGCTGACAGCAAGGGGAGCAACAGTTGGTCATGGTGTCAGGGGTGGAAGGTGGGCTTCTATTCAGAGGTGAGTTTCCCAGAATGTGATGACCCCTTGCAATCTGGACCTTTTATACACCTGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACATTGTTTTTCATACTCTCTTTGCGA--TCGTCAAAGGGGAAGTTGTTTCTG--AAATCTTATGAATCTGTTGAAAGTAAGTGTTTAATC----TGTTAATTGAGAATTACTCATAAAAACTTCGTTTCAGATAAAAGGAAGTCAGTCTCATTATCAGCATCATTCCTGCTCTGACCATCATCTGGTCATGTGA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28086659 399 - 80997621 CAGCAGGTGGTCCTGCAGCAGGTGGTCCTGCAGCACGTAGGCTGACAGCAAGGGGAGCAACAGTTGGTCATGGTGTCAGGGGTGGAAGGTGGGCTTCTATTCAGAGGTGAGTTTCCCAGAATGTGATGACCCCTTGCAATCTGGACCTTTTATACACCTGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACATTGTTTTTCATACTCCCTTTGCGA--TCGTCAAAGGGGAAGTTGTTTCTG--AAATCTTATGAATCTGTTGAAAGTAAGTGTTTAATCTGTTTGTTAATTGAGAATTACTCATAAAAACTTCGTTTCAGATAAAAGGAAGTCAGTCTCATTATCAGCATCATTCCTGCTCTGACCATCATCTGGTCATGTGA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2133015 399 + 10377808 CAGCAGGTGGTCCTGCAGCAGGTGGTCCTGCAGCACGTAGGCTGACAGCAAGGGGAGCAACAGTTGGTCATGGTGTCAGGGGTGGAAGGTGGGCTTCTATTCAGAGGTGAGTTTCCCAGAATGTGATGACCCCTTGCAATCTGGACCTTTTATACACCTGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACATTGTTTTTCATACGCACTTTGCGA--TCGTCAAAGGGGAAGTTGTTTCTG--AAATCTTATGAATCTGTTGAAAGTAAGTGTTTAATCTGTTTGTTAATTGAGAATTACTCATAAAAACTTCGTTTCAGATAAAAGGAAGTCAGTCTCATTATCAGCATCATTCCTGCTCTGACCATCATCCCGTCATGTGA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2039815 399 -  8458610 CAGCAGGTGGTCCTGCAGCAGGTGGTTCTGCAGCACGTAGGCTGGCAGCAAGGGGAGCAACAGTGGGTCATGGTGTCAGGGGTGGAGGGTGGGTTTCTATTCAGAGGTGAGTTTCCCAGAATGTGATGACCCCTGGCAATCTGGACCTTTTATACACCTGGCCTCCAAAGTTTCCACCAATCATCAGGACTTTTTCTTGTTGCTGTTTACATTGTTTTTCATACTCCCTTTGCGA--TCGTCAAAGGGGAAGTTGTTTCTG--AAATCTTATGAATCTGTTGAAAGTAAGTGTTTAATCTGTTTGTTAATTGATAATTACTCATAAAAACTTTGTTTCAGATAAAAGGAAATCAGTCTCATTATCAGCATCATTCCTGCTCTGACCATCATCCGGTCATGTGA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64972950 399 + 75148670 CAGCAGGTGGTCCTGCAGCAGGTGGTCCGGCAGCACGTAGGCTGGCAGCAAGGGGAGCAACAGTGGGTCATGGTGTCAGGGGTGGACGGTGGGTTTCTATTCAGAGGTGAGTTTCCCAGAATCTGATGACCCCTTGCAATCTGGACCTTTTATACACCTGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACATTGTTTTTCATACTCCCTTTGTGA--TCGTCAAAGGGGAAGTTGTTTCTG--AAATCTTATGAATCTGTTGAAAGTAAGTGTTTAATCTGTTTGTTAATTAAGAATTACTCATAAAAACTTTGTTTCAGATAAAAGGAAATCAGTCTCATTATCAGCATCATTCCTGCTCTGACCATCATCTGGTCATGTGA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2234694 399 +  4244037 CAGCAGGTGGTCCTGCAGCAGGTGGTCCTGCAGCACGTAGGCTGGCAGCAAGGGGAGCAACAGTTGGTCATGGTGTCAGGGGTGGAGGGTGGGTTTCTATTCAGAGGTGAGTTTCCCAGGATGTGATGACCCCTTGCAATCTGGACCTTTTATACACCTGGCCTCCAAAGTTTCCACCAATCATCAGGACTTTTTCTTGTTGCTGTTTACATTGTTTTTCATACTCCCTTTGCGA--TCGTCAAAGGGGAAGTTGTTTCTG--AAATCTTATGAATCTGTTGAAAGTAAATGTTTAATCTGTTTGTTAATTGAGAATTACTCATAAAAACTTTGTTTCAGATAAAAGGAAATCAGTCTCATTATCAGCATCATTCCTGCTCTGACCATCATCCGGTCATGTGA
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2244050 384 +  4569836 CAGCAGGTGGTCCT---------------GCAGCACGTAGGCTGGCAACAAGGGGAGCAACAGCGGGTCATGGTGTCAGGGGTGGAGGGTGGGCTTCTATTCAGAGGTGAGTTTCCCAGAATCTGATGATCCCTTGCAATCTGGACCTTTTATACACCTGGCCTCCAAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACATTGTTTTTCATACTCCCTTTGCGA--TCGTCAAAGGGGAAGTTGTTTCTG--AAATCTTATGAATCTGTTGAAAGTAAGTGTTTATTCTGTTTGTTAATTGAGAATTACTCATAAAAACTTTGTTTCAGATAAAAGGAAATCAGTCTCATTATCAGCATCATTCCTGCTCTGACCATCATCTGGTCATGTGA
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1887791 398 +  3513951 CAGCAGGTGGTCCTGCAGCAGGTGGTCCTGCAGCACGTAGGCTGGCAGCAAGGGGAGCAGCAGTGGGTCATGGTGTCAGGGGTGAACGGTGGGCTCCTGTTCAGAGGTGAGTTTCCCAGAATATGGTGACTCCTTCCAATCTGGACCTTTTATACACCTGGCCTCTGAAGTTTCCACCAATCAGCAGGACATTTCCTTGTTGCTGTTTACATTGTTTTCTACAGTCAGTTTGGGA--TTATCCAAGGGGAAGTTGCTTCTG--AAATCTGATGAATTTTTTAAAAGTAA-GGTTTAATCTGTTTCTTAATTGATAATTTGTCATAGAGACTTTGTTTCAGATAAAAGGAAGGCAGTCTCATCATCAGCATCATTCCTGCTCTGACCTTCATCTGGTCATGTGA
i saiBol1.JH378271          C 0 I 2
s cebCap1.NW_016107543v1       23200 399 -  4077172 CAGCAGGTGGTCCTGCAGCAGGTGGTCCTGCAGCACGTAGGCTGGCAGCAAGGGGAGCAGCAGTAGGTCATGGTGTCAGGGGTGGAGGGTGGGCTTCTGTTCAGAGGTGAGTTTCCCAGAATCTGGTGACCCCTTCCCATCTGGACCTTTTATCCACCTGGCCTCTGAAGCTTCCACCAATCAGCAGGACTTTTCCTTGTTGCTGTTTACATTGCTTTCAACAGTCTGTTTAGGA--TTGTCAAAGGGGAAGTTGCTTCTG--AAATCTGGTGAATTTTTTAAAAGTAAGGGTTTAATCTGTTTCTTAATTGAGAATTAGTCATAGAGACTTTGTTTCAGATAAAAGGAAGGCAGTCTCATCATCAGCACCATTCCTGCTCTGACCTTCATCTGGTCATGTGA
i cebCap1.NW_016107543v1    I 12237 I 2
s aotNan1.NW_018505111v1       17045 399 -    94492 CAGCAGGTGGTCCTGCAGCAGGTGGTCCTGCAGCACGTAGGCTGGCAGCAAGGGGAGCAGCAGTGGGTCATGGTGTCAGGGGTGGAGGGTGGGCTCCTGTTCAGAGGTGAGTTTCCCAGAATTTGATGACCCCTTCCAATCTGGACCTTTTATACACCTGGCCTCCGAAGTTTCCACCAATCAGCAGGACTTTTCCTTGTTGTTGTTTACATTGTTTTCTACAGTCAGTTTGGGA--TTGTCAAAGGGGAAGTTGCTTCTG--AAATCTGATTAACTTTTTAAAAGTAAGGGTTTAATCTGTTTCTTAATTGAGAATTAGTCATAGAGACTTTGTTTCAGATACAAGGAAGGCAGTCTCATCATCAGCATCATTCCTGCTCTGACCTTCATCTGGTCACGTGA
i aotNan1.NW_018505111v1    C 0 I 24
s otoGar3.GL873537          22900036 392 + 28711273 CAGCAGGTGGTCCTGCAGCAGGTGGTCCTGCAACATGTGGGCTGGCAACAAGGGGAGCAACAGTGGGTCATGGTGTC-TGTGTGGAGGGTGGGTTCCTGTTCAGAGGTGAGTTTCCCAGAATCTGCTGATGTCTTCCAATGTTGACCTTTTATACACTGGGCCTCTGATGTTTGGACCAATCAGCAGAATTTTTCCTTGTAG---TTTACAATGTTTTTCATAATCAATGGGTGAATTAATAAAGTGGGAAGTTGTTTCCT--AAGTGTTAAGAATCTTTCAGAAGT----GTTTGATCTGTTTCTTAATTGAGAATAACTCCTAGAAACTGT-TTTCAGATACAAGGAAAGTGATCACATCATCAGCATTTTTTCTGCTCTGGTCACTATGTGGTCATGTCA
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            632113 372 -   852752 ---------------CAAGAACTGGACCCACAGCAGGTGGGCTGGCAGCAGGGAGAGCAGCAGGAGGTCATGGCGTGGTGGGTGGAGA--GGGTTCGTGTTCAGAG--GGGTTTCCCAGAATCTGATGGCTCCTTTAATTCTGCATCTTTTATACACTGAGCCCC--AATATTTGACCAATCAGCAGGTCTTTTCCTTATTATTG---ACATTGTTTT-CATAAATAGTGGGCAAA-TTATCAAGGAGGATGTT-TTCCTGCAAAGTGTTATTAATCTTTCCAAAGTAAGTGTTTAATCATTTTCATAATTGGGA--CATTTATAGAAATATT-TTTCGTTTATGAAGAAGGTGGTCACATCCTCACCATCCTTCCTGCCCCAGTCATCATCT-GTCATGTGA
i dasNov3.JH570468          C 0 C 0

a score=175519.000000
s hg38.chr17_JH159148v1_alt    69434 22 +    88070 TAGTTCCTGGTGATCCGGGAAG
s panTro5.chr17             16374447 22 + 83181570 TAGTTCCTGGTGATCCGGGAGG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296624 22 + 83442489 TAGTTCCTGGTGATCCGGGAGG
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4132055 22 +  4267968 TAGTTCCTGGTGATCCAGGAGG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2116258 22 -  2193130 TAGTTCCTGGTGATCCGGGAGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30176744 22 - 77216781 TAGTTCCTGGTGATGTGGGAGG
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28087058 22 - 80997621 TAGTTCCTGGTGATGTGGGAGG
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2133414 22 + 10377808 TAGTTCCTGGTGATGTGGGAGG
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2040214 22 -  8458610 TAGTTCCTGGTGATCCGGGAGG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64973349 22 + 75148670 TAGTTCCTGGTGATCCGGGAGG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2235093 22 +  4244037 TAGTTCCTGGTGATCCGGGAGG
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2244434 22 +  4569836 TAGTTCCTGGTGATCCGGGAGG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1888191 20 +  3513951 GAGTTCCTGTGG--CTGGGAGG
i saiBol1.JH378271          I 2 I 2
s cebCap1.NW_016107543v1       23601 20 -  4077172 GAGTTCCTGTGG--TGGGGAGG
i cebCap1.NW_016107543v1    I 2 I 2
s otoGar3.GL873537          22900428 22 + 28711273 TAATTCCTGCTGGCCTGGGAGG
i otoGar3.GL873537          C 0 I 2
s dasNov3.JH570468            632485 22 -   852752 TAGTTCCTGCTGGCCTGAGGAG
i dasNov3.JH570468          C 0 I 3
e aotNan1.NW_018505111v1       17444 24 -    94492 I

a score=1390025.000000
s hg38.chr17_JH159148v1_alt    69456 146 +    88070 C--AGATAGTTCTCTCTGTCCAGCCTCAT--GGTTG-ACTGTATGTAGACTGGGAAATGTCTGTGGGCAGTCGCGTGATGCTGTTATGTTCACAGTGATGCATTGAATCCGTGCCCGGCACCAAGCCTATTTACCCACAAA-AGTCTGATTC
s panTro5.chr17             16374469 146 + 83181570 C--AGATAGTTCTCTCTGTCCAGCCTCAT--GGTTG-ACTGTATGTAGACTGGGAAATGTCTGTGGGCAGTCGCGTGATGCTGATATGTTCACAGTGATGCATTGAATCCGTGCCCGGCACCAAGCCTATTTACCCACAAA-AGTCTGATTC
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296646 146 + 83442489 C--AGATAGTTCTCTCTGTCCAGCCTCAT--GGTTG-ACTGTATGTAGACTGGGAAATGTCTGTGGGCAGTCGCGTGATGCTGATATGTTCACAGTGATGCATTGAATCCGTGCCCGGCACCAAGCCTATTTACCCACAAA-AGTCTGATTC
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4132077 146 +  4267968 C--GGATAGTTCTCTCTGTCCAGCCTCAT--GGTTG-ACTGTATGTAGACTGGGAAATGTCTGTGGGCAGTCGCGTGATGCTGATATGTTCACAGTGATGCATTGAATCCGTGCCCGGCACCAAGCCTATTTACCCACAAA-AGTCTCATTC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2116280 146 -  2193130 C--AGATAGTTCTCTCTGTCCAGCCTCAT--GGTTG-ACTGTATGTAGACTGGGAAATGTCTGTGGGCAGTCGCGTGATGCTGATATGTTCACAGTGACGCATTGAATCTGTGCCCGGCACCAAGCCTATTTACCCACAGA-AGTCTGATTC
i nomLeu3.chrUn_GL397460_1  C 0 I 279
s rheMac8.chr16             30176766 146 - 77216781 C--AGATAGTTCTCTCTGCCCCGCCTCAT--GGTTG-GCTGTATGTAGACTGGGAAATGTCTGTGGGCAGTCGCGTGATGCTGATATATTCACAGTGATGCATTGAATCCATGCCCGGCCCCAAGCCTGTTCACCCACAAA-AGTCTAATTC
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28087080 146 - 80997621 C--AGATAGTTCTCTCTGCCCCGCCTCAT--GGTTG-GCTGTATGTAGACTGGGAAATGTCTGTGGGCAGTCGCGTGATGCTGATATATTCACAGTGATGCATTGAATCCATGCCCGGCCCCAAGCCTGTTCACCCACAAA-AGTCTAATTC
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2133436 146 + 10377808 C--AGATAGTTCTCTCTGCCCCGCCTCAT--GGTTG-GCTGTATGTAGACTGGGAAATGTCTGTGGGCAGTCGCGTGATGCTGATATATTCACAGTGATGCATTGAATCCATGCCCGGCCCCAAGCCTGTTCACCCACAAA-AGTCTAATTC
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2040236 146 -  8458610 C--AGATAGTTCTCTCTGCCCCGCCTCAT--GGTTG-GCTGTATGTAGACTGGGAAATGTCTGTGGGCAGTTGCGTGATGCTGATATATTCACAGTGATGCATTGAATCCATGCCCAGCCCCAAGCCTGTTCACCCACAAA-AGTCTAATTC
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64973371 148 + 75148670 CTCAGGAAGTTCTGTCTGCCCAGTCTCAT--AGTTG-GCTGTATGTAGACTGGGAAATGTCTGTGGGCAGTCGCGTGATGCTGATATATTCACAGTGATGCATTGAATCCATGCCCGGCCCCAAGCCTGTTCACGCACAAA-AGTCTAATTC
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2235115 143 +  4244037 C-----AGATACTCTCTGCCCTGCCTCAT--GGTTG-GCTGTATGTAGACTGGGAAATGTCTGTGGGCAGTCGCGTGATGCTGATATATTCACAGTGATGCATTGAATCCATGCCCAGCCCCAAGCCTGTTCACCCACAAA-AGTCTAATTC
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2244456 147 +  4569836 C--AGATAGTACTCTCTGCCCCGCCTCAT--GGTTG-GCTGTATGTAGACTGGGAAATGTCTGTGGGCAGTCGCGTGATGCTGATATATTCACAGTGATGCATTGAATCCATGCCCGGCCCCAAGCCTGTTCACGCACAAAGAGTAATGTTC
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1888213 146 +  3513951 C--AGAAAGTTCTCTCTGCCCAGCCTCAT--GTTTG-ACTGTATGCAGACTGGGAGGTGTCTGTGGGCAGGGGCGTGATGCTGATATGTTCACAATGATGAATTGAATCCATGCCTGGTTCCAAGCCTGTTCACCCACAAA-AGTCTGATTC
i saiBol1.JH378271          I 2 C 0
s cebCap1.NW_016107543v1       23623 146 -  4077172 C--AGGAAGTTCTCTCTGCCCAGCCTCAT--GTTTG-ACCGTATGCAGACTGGGAGGTGTCTGTGGGCAGGGGCATGATGCTGATATGTTCACAACGATGAATTGAATCCATGCCTGGCCCCAAGCTTGTTCACCCACAAA-AGTCTGATTC
i cebCap1.NW_016107543v1    I 2 C 0
s aotNan1.NW_018505111v1       17468 145 -    94492 C--AGGAAGTTCTCTCTGCCCAGCCTCAT--GTTTG-ACTGTATGCAGA-TGAGAAGTGTCTGTGGGCAGGGGTGTGATGCTGGTATGTTCACAATGATGAATTGAATCCATGCCTGGCCCCAAGCCTATTCACCCACAAA-AGTCTGATTC
i aotNan1.NW_018505111v1    I 24 C 0
s otoGar3.GL873537          22900452 146 + 28711273 C--CGGAAGTTCTCTCTGTCCTTCCTGTT--GGTTTCCCTGCATGTATATTGGGAAATGTCTATGGGGAGG-GCATGGTACTGATATGTGCAGGTTGTTGAATTGAATCCATGCTTTGGTCCAAGTTTGTTTACCTCCAAA-AGCCTGAGTG
i otoGar3.GL873537          I 2 C 0
s dasNov3.JH570468            632510 144 -   852752 C--TTACCTTTTTCTCTCCCCAGTTTTATTCATTTG-ACTGT---CAGATTGCCAGGTGCACCTGGGGGTGTGCATGATGCTGATACGTTCCCTGTGACAAACGGGATCCCTGCCTGGGTCCAAATCTGTTCACCCACAA--AGCCTGATTC
i dasNov3.JH570468          I 3 C 0

a score=1987944.000000
s hg38.chr17_JH159148v1_alt    69602 229 +    88070 -AAG----AGTAACAAGCATCTTTC----TCGCTACAAACTATTCCACCTGTGTCTTCCAGTTCTATTACACTCAC-TAGGGAAAGGGTGTTTGGCACAATGTATTCCAAAATGCGGAGCTAGACCAAAGCAGGTGGGTAGAAAAAGG---AG---TCCACTGGGAT---TCAGAAAGCATCGAGT-GTCTCTGTGATGGTGTTGCCATTTACcctgatttgcctgggactgaagggtttaccagca--------tg
s panTro5.chr17             16374615 229 + 83181570 -AAG----AGTAACAAGCATCTTTC----TTGCTACAAACTATTCCACCTGTGTCTTCCAGTTCTATTACACTCAC-TAGGGAAAGGGTGTTTGGCACAATGTATTCCAAAATGCAGAGCTAGACCAAAGCAGGTGGGTAGAAAAAGG---AG---TCCACTGGGAT---TCAGAAAGCATCAAGT-GTCTCTGTGATGGTGTTGCCATTTACcctgatttgcctgggactgaagggtttaccagca--------tg
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16296792 229 + 83442489 -AAG----AGTAACAAGCATCTTTC----TCGCTACAAACTATTCCACCTGTGTCTTCCAGTTCTATTACACTCAC-TAGGGAAAGGGTGTTTGGCACAATGTATTCCAAAATGCAGAGCTAGACCAAAGCAGGTGGGTAGAAAAAGG---AG---TCCACTGGGAT---TCAGAAAGCATCAAGT-GTCTCTGTGATGGTGTTGCCATTTACcctgatttgcctgggactgaagggtttaccagca--------tg
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4132223 228 +  4267968 -AAG----AGTAACAAGCATCTTTC----TCGCTAC-AACTATTCCACCTGTGTCTTCCAGTTCTATTACACTCAC-TAGGGAAAGGGTGTTTGGCACAATGTGTTCCAAAATGCAGAGCTAGACCCAAGCAGGTGGGTAGAAAAAGG---AG---TCCACTGGGAT---TCAGAAAGCATCAAGT-GTCTCTGTGATGGTGTCGCCATTTACcctgatttgcctgggactgaagggtttaccagca--------tg
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2116705 229 -  2193130 -aaG----AGTAACAAGCATCTTTC----TGGCTACAACCTATTCCACCTGTGTCTTCCAGTTCTATTAAACTCAC-TAGGGAAAGGGTGTTTGGCACAATGTGTTCCAAAATGCAGAGCTAGACCAAAGCAGGTGGGTAGAAAAAGG---AG---TCCACTGGGAT---TCAGAAAGCATCAAGT-GTCTCTGTGATGGTGTTGCCGTTTACTctgatttgcctgggactgaagggtttaccagca--------tg
i nomLeu3.chrUn_GL397460_1  I 279 C 0
s rheMac8.chr16             30176912 238 - 77216781 -AAG----AGTAACAAGCATCTTTC----TCGCTACAACCTACTCCCTCTGTGTCTTCCAGTTCTCTTAAACTCAC-TAGGGAAAGGGTGTTTGGCACAATGTGTTGCAAAATGCAGAGCTACACCAAAGCAGGTGGGTAGAAAAAGG---AG---TCCACTGGGAT---TCAGAAAGCACCAAATGGTTTCCGTGATGGTgtggccatttatcccgatttgcctgtgactgagaggtttaccagcatgagaatgtg
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28087226 238 - 80997621 -AAG----AGTAACAAGCATCTTTC----TCGCTACAACCTACTCCCTCTGTGTCTTCCAGTTCTCTTAAACTCAC-TAGGGAAAGGGTGTTTGGCACAATGTGTTGCAAAATGCAGAGCTACACCAAAGCAGGTGGGTAGAAAAAGG---AG---TCCACTGGGAT---TCAGAAAGCACCAAATGGTTTCCGTGATGGTgtggccatttatcccgatttgcctgtgactgagaggtttaccagcatgagaatgtg
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2133582 238 + 10377808 -AAG----AGTAACAAGCATCTTTC----TTGCTACAACCTACTCCCTCTGTGTCTTCCAGTTCTCTTAAACTCAC-TAGGGAAAGGGTGTTTGGCACAATGTGTTGCAAAATGCAGAGCTACACCAAAGCAGGTGGGTAGAAAAAGG---AG---TCCACTGGGAT---TCAGAAAGCACCAAATGGTTTCCGTGATGGTgtggccatttatcccgatttgcctgtgactgagaggtttaccagcatgagaatgtg
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2040382 238 -  8458610 -AAG----AGTAACAAGCATCTTTC----TCGCTACAACCTACTCCCCCTGTGTCTTCCAGTTCTCTTAAACTCAC-TGGGGAAAGGGTGTTTGGCACAATGTGTTGCAAAATGCAGAGCTACACCAAAGCAGGTGGGTAGAAAAAGG---AG---TCCACTGGGAT---TCAGAAAGCACCAAATGGTTTCTGTGATGGTGTGGCCATTTATCCCGATTTGCCTGTGACGGAGAGGTTTACCAGCATGAGAATGTG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64973519 238 + 75148670 -AAG----AGTAACAAGCATCTTTC----TCGCTACAACCTACTCCCCCTGTGTCTTCCAGTTCTCTTAAACTCAC-TGGGGAAAGGGTGTTTGGCACAATGTGTTGCAAAATGCAGAGCTACACCAAAGCAGGTGGGTAGAAAAAGG---AG---TCCACTGGGAT---TCAGAAAGCATCAAATGGTTTCTGTGATGGTGTGGCCATTTATCCCGATTTGCCTGTGACTGAGAGGTTTACCAGCATGAGAATGTG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2235258 238 +  4244037 -AAG----TGTAACAAGCATCTTTC----TCGCTACAACCTACTCCCCCTGTGTCTTCCAGTTCTCTTAAACTCAC-TGGGGAAAGGGTGTTTGGCACAATGTGTTGCAAAATGCAGAGCTACACCGAAGCAGGTGGGTAGAAAAAGG---AG---TCCACTGGGAT---TCAGAAAGCACCAAATGGTTTCTGTGATGGTgtggccatttatcccgatttgcctgtgactgagaggtttaccagcatgagaatgtg
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2244603 238 +  4569836 -AAG----AGTAACAAGCATCATTC----TCGCTACAACCTACTCCCCCTGTGTCTTCCAGTTCTCTTAAACTCAC-TGGGGAAAGGGTATTTGGCACAATGTGTTGCAAAATGCAGAGCTACACCAAAGCAGGTGGGTAGAAAAAGG---AG---TCCACTGGGAT---TCAGAAAGCATCAAATGGTTTCTGTGATGGTgtggccatttatcctgatttgcctgtaattgagaggtttaccagcatgagaatgtg
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1888359 245 +  3513951 -AAG----AGTAACAGGCATCTCTCTCTTTCTCTCCAACCTACTCCACCTGTGTCTTCCAGTTCTATCAAACTCACTTGGGAAAAGGGTGTTTGGCACAATGTGTTCCAAGATGCAGAGCCAGACCAAAGCAGGTAGGTAGACAAAGG---GG---TCCACTGAGATTCATCAGAAAGCATCAGATGGTCTCTGTGGTGGTGTGACCATTTATCCCGATTTGCCTGGGACTTACAGG-TTACCAGCATGAGAATGTG
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       23769 236 -  4077172 -AAG----AGTAACAGGCATCTCTC----TCTCTCCACCCTACTCCACC--TGTCTTCCAGTTCTATCAAACTCACTTGGGAAAAGGGTGTTTGGCACAATGTATTCCAAGATGCAGAGCCAGACCAAAGAAAGTGTGTAGACAAAGG---AG---TCCACTGAGAT---TCAGAAAGCATCAGATGGTCTCTGCGGTGGTGTGACCATTTATCCTGATTTGCCTGGGACTGACAGG-TTACCAGCATGAGAATGTG
i cebCap1.NW_016107543v1    C 0 C 0
s aotNan1.NW_018505111v1       17613 242 -    94492 -AAG----AGTAACAGGCATCTCTCTCCTTCTCTCCAACCTACTCCACCTGTGTTTTCCAGTTCTATCAAACTCACTTGGGAAAAGGGTGTTTGGCACAATGTGTTCCAAGATGCAGAGCCAGACCAAAGCAGGTGGGTAGACAAAGG---AG---TCCACTGAGAT---TCAGAAAGCATCAAATGGTCTCTGTTGTGGTgtgaccgtttatcccaatttgcctgggactgacagg-ttaccagcatgagaatgtg
i aotNan1.NW_018505111v1    C 0 C 0
s otoGar3.GL873537          22900598 221 + 28711273 -AAC----ACTAACAGCTATCTCTC----TCTGTAGAACCTACTCCAGAGGTTTATCCCAGTTCTATGAATGACAGTTGGGAAGAAGATATTTTTTACAATCTGTTCCATGTGGCAGAGAGGAGCCATATTAGGTTGATAGGAGGAGAGTTAG---TATTCTGGGAC---TAAGAAGGTATCA----GTTTGTG-------GGTGACATTCACCTGTATTTGGCT----------GGCTTACAAAGATGAGAATGTG
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            632654 236 -   852752 AAAGCTACAACAACAGGCTTTTTTTTTTTTCTGTGGCACCCACCTCTGCT-TGTATCAAATATCAAAGATATTTGC-TTGGAGAA---TGTTCAGCAGAATTTCTTCCATATGGAAATTCACAAGCAAAACAGGAGGATTGAAGCAGG---AGAATTACATTGGTAT---TCAGAAAGTTTCAATCCGTTTGCATCGTGGAGT--TCCACCATCCTTGTTTTACCATGGCTGTGGGGTTCCCCACAATG--------
i dasNov3.JH570468          C 0 I 2779

a score=414143.000000
s hg38.chr17_JH159148v1_alt    69831 46 +    88070 ggactctctgtgacgtaagtgctctagattcgggcaaatcaagctg
s panTro5.chr17             16374844 46 + 83181570 ggactctctgtgACGTAAGTGCTCTAGATTCGGGAAAATCAAGCTG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16297021 46 + 83442489 ggactctctgtgatgtaagtgctctagattcgggcaaatcaagctg
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4132451 46 +  4267968 ggactctctgtgatgtaagtgctctagattcgggcaaatcaggctg
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2116934 46 -  2193130 ggactctctgtgACGTAAGTGCTCTAGATTCGGGCAAATTAAGCGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30177150 46 - 77216781 ggactctgtgcgacataagtgctctagattcgggcaaatcaagctg
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28087464 46 - 80997621 ggactctgtgcgacataagtgctctagattcgggcaaatcaagctg
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2133820 46 + 10377808 ggactctgtgcgacataagtgctctagattcgggcaaatcaagctg
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2040620 46 -  8458610 GGACTCTGTGCGACATAAGTGCCCTAGATTCGGGCAAATCAAGCTG
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64973757 46 + 75148670 GGACTCTGTGCGACATAAGTGCTCTAGATTCGGGCAAATCAAGCTG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2235496 46 +  4244037 ggactctgtgcgacataagtgctgtagattcgggcaaatcaagctg
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2244841 46 +  4569836 ggactctgtgtgatataagtgctctagattcgggcaaatcaagctg
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1888604 43 +  3513951 GAACTCTCTGTGACATAAGTGCTCTAGATTTGGGCAAATCAAG---
i saiBol1.JH378271          C 0 C 0
s cebCap1.NW_016107543v1       24005 46 -  4077172 GAACTCTTTGTGATATAGGTGCTCTAGATTTGGGCAAATCAAGCTG
i cebCap1.NW_016107543v1    C 0 I 5287
s aotNan1.NW_018505111v1       17855 46 -    94492 gaactctctgtgACATAAGTGCTCTAGATTTGGGCAAATCAAGCTG
i aotNan1.NW_018505111v1    C 0 I 4966
s otoGar3.GL873537          22900819 46 + 28711273 TGAGTTTCTGTAATACACTTACCATAGATCCAGACAAATCCAGATG
i otoGar3.GL873537          C 0 C 0
e dasNov3.JH570468            632890 2779 -   852752 I

a score=112743.000000
s hg38.chr17_JH159148v1_alt    69877 16 +    88070 agtt-ctggtcCTAGct
s panTro5.chr17             16374890 16 + 83181570 AGTT-CTGGTCCTAGCT
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16297067 16 + 83442489 agtt-CTGTTCCTAGct
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4132497 16 +  4267968 agtt-ctggtcCTAGct
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2116980 16 -  2193130 AGTT-CTGGTCCTAGct
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30177196 16 - 77216781 agtt-ctggtcCTAGCT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28087510 16 - 80997621 agtt-ctggtcCTAGCT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2133866 16 + 10377808 agtt-ctggtcCTAGCT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2040666 16 -  8458610 AGTT-CTGGTCCTAGCT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64973803 16 + 75148670 AGTT-CTGGTCCTAGCT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2235542 16 +  4244037 agtt-ctggtcCTAGCT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2244887 16 +  4569836 agtt-ctggtcCTAGCT
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1888647 12 +  3513951 -----CTGGTCCTAGCC
i saiBol1.JH378271          C 0 C 0
s otoGar3.GL873537          22900865 17 + 28711273 AGCTGGTGACACTAGCT
i otoGar3.GL873537          C 0 T 45378
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e dasNov3.JH570468            632890 2779 -   852752 I

a score=6248.000000
s hg38.chr17_JH159148v1_alt    69893 2 +    88070 tg
s panTro5.chr17             16374906 2 + 83181570 TG
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16297083 2 + 83442489 tg
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4132513 2 +  4267968 tg
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2116996 2 -  2193130 tg
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30177212 2 - 77216781 TT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28087526 2 - 80997621 TT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2133882 2 + 10377808 TT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2040682 2 -  8458610 TT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64973819 2 + 75148670 TG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2235558 2 +  4244037 TT
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2244903 2 +  4569836 TG
i colAng1.NW_012122154v1    C 0 C 0
s saiBol1.JH378271           1888659 2 +  3513951 TG
i saiBol1.JH378271          C 0 T 14031
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e dasNov3.JH570468            632890 2779 -   852752 I
e otoGar3.GL873537          22900882 45378 + 28711273 T

a score=54767.000000
s hg38.chr17_JH159148v1_alt    69895  22 +    88070 ttaa---------ttctaatactttttgta-------------------t---------------------------------------------------------------------
s panTro5.chr17             16374908  23 + 83181570 TTAA---------TTCTAATACTTTTTATA------------------TT---------------------------------------------------------------------
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16297085  23 + 83442489 ttaa---------ttctaatactttttatt------------------at---------------------------------------------------------------------
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4132515  22 +  4267968 ttaa---------ttctaatactttttgta-------------------t---------------------------------------------------------------------
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2116998  35 -  2193130 ttaagcttgctagttctaatactttttgta---------------ctttt---------------------------------------------------------------------
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30177214  34 - 77216781 TTGA---------TTCTAATACtttttgtattttgtgt-------ttttt---------------------------------------------------------------------
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28087528  37 - 80997621 TTGA---------TTCTAATACTTTTTGTATTTTGTGT----GTGTGTTT---------------------------------------------------------------------
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2133884 106 + 10377808 TTGA---------TTCTAATACtttttgtattttgtgt----ggtttttttttttttttttGGTGAGGGTGATATTATATTTTTTTTAAATTTAAAACATTAAATATTCCTTGCTGGTA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2040684  36 -  8458610 TTGA---------TTCTAATACtttttgtattttgtg-----gttttttt---------------------------------------------------------------------
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64973821  34 + 75148670 TTGA---------TTCTAATACTTTTTGTATTTTGTG-------TGTTTT---------------------------------------------------------------------
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2235560  36 +  4244037 TTGA---------TTCTAATACtttttgtattttgtgt-----ttttttt---------------------------------------------------------------------
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2244905  41 +  4569836 TTGA---------TTCTAACACTTTTTGTATTTTGTGTGTGTGTGTTTTT---------------------------------------------------------------------
i colAng1.NW_012122154v1    C 0 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e dasNov3.JH570468            632890 2779 -   852752 I
e otoGar3.GL873537          22900882 45378 + 28711273 T
e saiBol1.JH378271           1888661 14031 +  3513951 T

a score=2145741.000000
s hg38.chr17_JH159148v1_alt    69917 361 +    88070 ttttttttg---------------------------gtgtgac----agaaaattgcacatgtgcagtcatgactcataaaaaatagtaatagttttcttcgctttataagagtatttttaatcttgc--------------tttttttttggcccttgtccaggggtagaccctccagggcaatgtctaatagaatggtgtagtgtatatctttttatattcgttggatagaaaggagaactctcagtatttcacaattaattacgatgctttctgtcttttttgtagattcatttcatcatagcaacagggcttgttctattccttattttctgagagacagaaaactgaaaatgtactgaaatttacaaaatgctttttctttataagctgaaataatgttat
s panTro5.chr17             16374931 361 + 83181570 TTTTTTTTG---------------------------GTGTGAC----AGAAAATTGTACATGTGCAGTCATGACTCATAAAaaatagtaatagttttcttcgctttataagagtatttttaatcttgc--------------tttttttttggcccttgtccaggggtagaccctccaggacaatgtctaatagaatggtgtagtgtatatctttttatatttgttggatagaaaggagaactctcagtatttcacaattaattacgatgctttctgtcttttttgtagattcatttcatcatagcaacagggcttgttctattccttattttctgagagacagaaaactgaaaatgtactgaaatttacaaaatgctttttctttataagctgaaataatgttat
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16297108 361 + 83442489 ttttttttg---------------------------gtgtgac----agaaaattgtacatgtgcagtcatgactcataaaaaatagtaatagttttcttcgctttataagagtatttttaatcttgc--------------tttttttttggcccttgtccaggggtagaccctccaggacaatgtctaatagaatggtgtagtgtatatctttttatatttgttggatagaaaggagaactctcagtatttcacaattaattacgatgctttctgtcttttttgtagattcatttcatcatagcaacagggcttgttctattccttattttctgagagacagaaaactgaaaatgtactgaaatttacaaaatgctttttctttataagctgaaataatgttat
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4132537 360 +  4267968 ttttttttg---------------------------gtgtgac----agaaaattgtacatgtgcagtcatgactcgtaaaaaatagtaatagttttctttgctttataagagtatttttaatcttgc---------------ttttttttggcccttgtccaggggtagaccctccaggacaatgtctgatagaatggtgtagtgtatatctttttatattctttggatagaaaggagaactctcagtatttcacaattaattacgatgctttctgtcttttttgtagattcatttcatcatagcaacagggcttgttctattccttattttctgagagacagaaaactgaaaatgtactgaaatttgcaaaatgctttttctttataagctgaaataatgttat
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2117033 360 -  2193130 ttttttttg---------------------------ctgtgac----agaaaattgcacatgtgcagtcgtgactcgtaaaaaatagtaatagttttcttcgctttataagagtattttaaatcttgc---------------ttttttttggcccttgtccaggggtagaccctccaggacaatgtctaatagaatggtgtagtgtatgtctttttatattctttggatagaaaggagaactctcagtatttcacaattaattacaatgctttctgtcttttttgtagattcatttcatcatagcaacagggcttgttctattccttattttctgagagatagaaaactgaaaatatactgaaatttacaaaatgctttttctttataagctgaaatcatgttat
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30177248 375 - 77216781 ttttttttG---------------------------GTGTGAC----AGAAAATTGTACATGTGCAGTCATGACTCATAAAAAATAGTAATAGTTTTCTCCACTTTATAAGAGTAttttcaatcttgctttcttttttttttttttttttttgcccttgtccaggcatagaccctccaggacaatgtctaatagaatgttgtagtgtgtgtctttttatattcttcggatagaaaggagaactctcaggatttcacaattaattacgatgctttctgtcttttttgtagattcatttcatcatagcaacagggcttgttctagtccttattttctgagagatagaaaactgaaaatgttttgaaatttacaaaatcctttttctttataagctgaaataatgtaat
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28087565 372 - 80997621 TTTTTTTTG---------------------------GTGTGAC----AGAAAATTGTACATGTGCAGTCATGACTCATAAAAAATAGTAATAGTTTTCTCCACTTTATAAGAGTAttttcaatctttctttct---ttttttttttttttttgcccttgtccaggcatagaccctccaggacaatgtctaatagaatggtgtagtgtgtgtctttttatattcttcggatagaaaggagaactctcaggatttcacaattaattacgatgctttctgtcttttttgtagattcatttcatcatagcaacagggcttgttctagtccttattttctgagagatagaaaactgaaaatgttttgaaatttacaaaatcctttttctttataagctgaaataatgtaat
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2133990 375 + 10377808 TTTTTTTTG---------------------------GTGTGAC----AGAAAATTGTACGTGTGCAGTCATGACTCATAAAAAATAGTAATAGTTTTCTCCACTTTATAAGAGTATTTTCAATCTTGCTTTCTTTcttttttttttttttttgcccttgtccaggcatagaccctccaggacaatgtctaatagaatggtgtagtgtgtgtctttttatattcttcggatagaaaggagaactctcaggatttcacaattaattacgatgctttctgtcttttttgtagattcatttcatcatagcaacagggcttgttctagtccttattttctgagagatagaaaactgaaaatgtattgaaatttacaaaatcctttttctttataagctgaaataatgtaat
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2040720 370 -  8458610 ttttttttG---------------------------GTGTGAC----AGAAAATTGTACATGTGCAGTCATGACTCATAAAAAATAGTAATAGTTTTCTCCACTTTATAAGAGTAttttcaatcttgcttt-----ttttttttttttttttgcccttgtccaggcgtagaccctccaggacaatgtctaatagaatggtgtagtgtgtgtctttttatattcttcggatagaaaggagaactctcaggatttcacaattaattacaatgctttctgtcttttttatagattcatttcatcatagcaacagggcttgttctattccttattttctgagagatagaaaactgaaaatgtattgaaatttacaaaatcctttttctttatacgctgaaataatgtaat
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64973855 368 + 75148670 TTTATTTTG---------------------------GTGTGAC----AGAAAATTGTACATGTGCAGTCATGACTCATAAAAAATAGTAATAGTTTTCTCCACTTTATAAGAGTAttttcaatcttgc-------tttttttttttttttttgcccttgtccaggcgtaggcccaccgggacaatgtctaatagaatggtgtagtgtgtatctttttttattcttcggatagaaaggagaactctcagtatttcacaattaattaccatgctttctgtcttttttgtagattcatttcatcatagcaacagggcttgttctattccttattttctgagaggtagaaaactgaaaatgtattaaaatttacaaaatcctttttctttataagctgaaataatgttat
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2235596 373 +  4244037 ttttttttg---------------------------gtgtGAC----AGAAAATTGTACATGTGCAGTCATGACTCATAAAAAATAGTAATAGTTTTCTCCACTTTATAAGAGTATTTTCAATCTTGCTTT--TTtttttttttttttttttgcccttgtccaggcgtagaccctccaggacaatgtctaatagaatggtgtagtgtgtgtctttttatattcttcggatagaaaggagaactctcaggatttcacaattaattacgatgctttctgtcttttttgtagattcatttcatcatagcagcagggcttgttctattccttattttctgagagatagaaaactgaaaatgtattgaaatttacaaaatcctttttctttatacgctgaaataatgtaat
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2244946 370 +  4569836 TTTTTTTTG---------------------------GTGTGAC----AGAAAATTGTACATGTGCAGTCACGACTCATAAAAAATAGTAATAG-TTTCTCCACTTTATAAGAGTAttttcaatcttgtttt----tttttttttttttttttgcccttgtccaggcgtagacccaccaggacaatgtctaatagaatggtgtagtgtgtatctttttatattcttcggatagaaaggagaactctcagtatttcacaattaattatgatgctttctgtcttttttgtagattcatttcatcatagcaacagggcttgttttattccttattttctgagagacagaaaactgaaaatgtattgaaatttacaaaatcctttttctttataagctgaaataatgttat
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22855504 362 + 28711273 ttttttttgactctttccttctattttttgttcctCATGttacctgtagttttttggaaatgcatagtcat-----atcatctataatggtagctttattcatttcatagtaat-taaaaaatctttt----------------------------ttatccattcttaaaccctcgaggacaatgttgaataggatggtgtgg---atgtctttgaatattcttggtatagcagggacactgctcaatattttgtaattaagtgtga----ttctg-cctttttgtagactctttttatcagaataattaagctttttctatgctttgtttattaagatactctatcttgaaaa--cattgagatttatgaaatgctttttctttatgtgttgagataatATTAT
i otoGar3.GL873537          T 45378 I 6709
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e dasNov3.JH570468            632890 2779 -   852752 I
e saiBol1.JH378271           1888661 14031 +  3513951 T

a score=188840.000000
s hg38.chr17_JH159148v1_alt    70278 33 +    88070 gattattctacctttt-cagtaagtgttgtttta
s panTro5.chr17             16375292 34 + 83181570 gattattctaccttttccagtaagtgttatttta
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16297469 34 + 83442489 gattattctaccttttccagtaagtgttatttta
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4132897 33 +  4267968 gattattctacctttc-cagtaagtgttatttta
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2117393 34 -  2193130 aattattctaccttttccagtaaatattatttta
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30177623 34 - 77216781 gattattctaccttttccagtaaatgttatttta
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28087937 34 - 80997621 gattattctaccttttccagtaaatgttatttta
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2134365 34 + 10377808 gattattctaccttttccagtaaatgttatttta
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2041090 34 -  8458610 gattattctaccttttccagtaaatgttatttta
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64974223 34 + 75148670 gattattctaccttttccagtaaatgttatttta
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2235969 34 +  4244037 gattattctaccttttccagtaaatgttatttta
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2245316 34 +  4569836 gattattctaccttttccagtaaatgttatttta
i colAng1.NW_012122154v1    C 0 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e dasNov3.JH570468            632890 2779 -   852752 I
e otoGar3.GL873537          22855866 6709 + 28711273 I
e saiBol1.JH378271           1888661 14031 +  3513951 T

a score=1264723.000000
s hg38.chr17_JH159148v1_alt    70311 215 +    88070 ttctatgttttttgagacagagtcttgcttcgtcacccaggctggagtgcagtggtacaatcttggctcactgcaatctccacctcccgggttcaagagattctcttgcctcagcctcccgagtagctgggactatgggagcacaccaccatgcccag------------------------------ctaacttttgta-tttttaatagagacagagtttcaccatgttggccagctgatcgcg
s panTro5.chr17             16375326 215 + 83181570 ttctatgttttttgagacagagtcttgcttcatcacccaggctggagggcagtggtacaatcttggctcactgcaatctccacctcccgggttcaagagattctcttgcctcagcctcctgagtagctgggactatgggagcacaccaccatgcccag------------------------------ctaatttttgta-tttttaatagagacagggtttcaccatgttggccagctgatcgcg
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16297503 215 + 83442489 ttctatgttttttgagacagagtcttgcttcatcacccaggctggagggcagcggtacaatcttggctcactgcaatctccacctcccgggttcaagagattctcttgcctcagcctcctgagtagctgggactatgggagcacaccaccatgcccag------------------------------ctaatttttgta-tttttaatagagacagggtttcaccatgttggccagctgatcgcg
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4132930 215 +  4267968 ttctatgttttttgagacagagtcttgctccgtcacccaggctggagtgcagtggtacaatcttggctcactgcaatctccacctcccgggttcaagagattctcttgcctcagcctcccgagtagctgggactatgggagcacaccaccatgcccag------------------------------ctaatttttgta-tttttaatagagacagggtttcaccatgttggccagctgatcgcg
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2117427 215 -  2193130 ttctatgttttttgagacagagtcttgctccgtcacccaggttggagtgcagtggtacaatctcggctcactgcaatctctacttcccaggtttaagagattctcttgcctcaacctcctgagtagttgggactacgggagaacaccaccatgcccag------------------------------ctaatttttgta-tttttaatagagacagggtttcaccacgttggccagctgatcgcg
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30177657 215 - 77216781 ttttatgttttttgagacagagtcttgttttgtcacccaggctggagtgcagtggtgcaatctctgctcactgcaatctccacctgctgggttcaagagattctcttgcctcagcctcccaagtagctgagactatgagtgcacaccaccatgcctgg------------------------------ttaatttttgta-tttttaatagagacaggatttcaccacgttggccagctgattgcc
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28087971 215 - 80997621 ttttatgttttttgagacagagtcttgttttgtcacccaggctggagtgcagtggtgcaatctctgctcactgcaatctccacctgctgggttcaagagattctcttgcctcagcctcccaagtagctgagactatgagtgcacaccaccatgcctgg------------------------------ttaatttttgta-tttttaatagagacaggatttcaccacgttggccagctgattgcc
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2134399 215 + 10377808 ttttatgttttttgagacagagtcttgttttgtcacccaggctggagtgcagtggtgcaatctctgctcactgcaatctccacctgctgggttcaagagattctcttgcctcagcctcccaagtagctgagactatgagtgcacaccaccatgcctgg------------------------------ttaatttttgta-tttttaatagagacaggatttcaccacgttggccagctgattgcc
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2041124 216 -  8458610 ttttatgttttttgagacagagtcttgttttgtcacccaggctggagtgcagtggtgcaatctctgctcactgcaatctccacctgctgggttcaagagattctcttgcgtcagcctcccaagtagctgagactatgggtgcacaccaccatgcctgg------------------------------ttaatttttatattttttaatagagacaggatttcaccacgttggccagctgattgcc
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64974257 215 + 75148670 ttttatgttttttgagacagagtcttgttttgtcgcccaggctggagtgcagcggcgcaatctcggctcactgtagtctccacctcccgggttcaagagattctcttgcctcagcctcccaagtagctgagactacgggcgcacaccaccatgcctgg------------------------------ttaatttttgta-tttttaatagagacagggtttcaccacactggccagcagattgcc
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2236003 215 +  4244037 ttttatgttttttgagacagagtcttgttttgtcacccaggctggagtgcagtggtgcaatctctgctcactgcaatctccacctgctgggttcaagagattctcttgcgtcagcctcccaagtagctgagactatgggtgcacaccaccatgcctgg------------------------------ttaatttttgta-tttttaatagagacaggatttcaccacgttggccagctgattgcc
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2245350 213 +  4569836 ttttatgttttatgagacagcgtcttgttttgtcgcccaggctggagtgcagtggcacaatctcggctcactgcaatctccacctcccgggttcaagagattctcttgcctcagcctcccaagtagctgagactatgggcgcacaccaccatgcctgg------------------------------ttaa-ttttgta--ttttaatagagacagggtttaaccacgttggccagtagattgcc
i colAng1.NW_012122154v1    C 0 C 0
s otoGar3.GL873537          22862575 241 + 28711273 tttttttttttttgagacagaggctcactatgttgccctcagtagagtaccatggtg---tcacagctcacagcaacctcaaactcttgggcttaagtgattctcttgcctcagcctcccaagtagctgggactataggtgcccgccacaacgcctggcAGGAAACCACTGTACTACAGGTGCTGAGCCCAATAACAGTC-TTTTTAATCTAG-TATTGttttctcgtgtttgtctactggtagtt
i otoGar3.GL873537          I 6709 I 169
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e dasNov3.JH570468            632890 2779 -   852752 I
e saiBol1.JH378271           1888661 14031 +  3513951 T

a score=222331.000000
s hg38.chr17_JH159148v1_alt    70526 39 +    88070 aactcctgacctcaagagatccacctgcctcggcttccc
s panTro5.chr17             16375541 39 + 83181570 aactcctgacctcaagagatccacctgcctcggcttccc
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16297718 39 + 83442489 aactcctgacctcaagagatccacctgcctcggcttccc
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4133145 39 +  4267968 aactcctgacctcaagagatccacctgcctcggcttctc
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2117642 39 -  2193130 aactcctgaactcaagtgatccacctgcctctgcttccc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30177872 39 - 77216781 aactcctgatctcaagtgatccacctgcctcggcctccc
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28088186 39 - 80997621 aactcctgatctcaagtgatccacctgcctcggcctccc
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2134614 39 + 10377808 aactcctgatctcaagtgatccacctgcctcggcctccc
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2041340 39 -  8458610 aactcctgatctcaagtgatccacctgcctcggcctccc
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64974472 39 + 75148670 aactcctgacctcaagtgatctacctgcctcggcttccc
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2236218 39 +  4244037 aactcctgatctcaagtgatccacctgcctcggcctccc
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2245563 39 +  4569836 aactcctgacctcaagtgattcacctgtctcggcttccc
i colAng1.NW_012122154v1    C 0 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e dasNov3.JH570468            632890 2779 -   852752 I
e otoGar3.GL873537          22862816 169 + 28711273 I
e saiBol1.JH378271           1888661 14031 +  3513951 T

a score=331460.000000
s hg38.chr17_JH159148v1_alt    70565  60 +    88070 aaaatgtgtt----------------------------------------------------attttaaaagttgattaatgttca----aatattagcccagtcttgcatttctg
s panTro5.chr17             16375580  60 + 83181570 aaaatgtgtt----------------------------------------------------attttaaaagttgattaatgttca----aatattagcccagtcttgcatttctg
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16297757  60 + 83442489 aaaatgtgtt----------------------------------------------------attttaaaagttgattaatgttca----aatattagcccagtcttgcatttctg
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4133184  60 +  4267968 aaaatgtgtt----------------------------------------------------attttaaaagttgattaatgttca----aatattagcccagtcttgtatttctg
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2117681  60 -  2193130 aaaatgtgtt----------------------------------------------------attttaaaagttgattaatgatca----aatattagctcagtcttgtatttctg
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30177911  60 - 77216781 aaagtgtgtt----------------------------------------------------atttaaaaagttgattaatgtcta----aatgttagcccagtcttgtatttttt
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28088225  60 - 80997621 aaagtgtgtt----------------------------------------------------atttaaaaagttgattaatgtcta----aatgttagcccagtcttgtatttttg
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2134653  60 + 10377808 acaatgtgtt----------------------------------------------------atttaaaaagttgattaatgtcta----aatgttagcccagtcttgtatttttg
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2041379  60 -  8458610 aaagtgtgtt----------------------------------------------------atttaaaaagttgattaatgtcca----aatgttagcccagtcttgtagttttg
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64974511  60 + 75148670 aaagtgtgtt----------------------------------------------------atttaaaaagttaattaatattca----aatgttagctcagtcttgtatttttg
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2236257  60 +  4244037 aaagtgtgtt----------------------------------------------------atttaaaaagttgattaatgtcca----aatgttagcccagtcttgtatttttg
i manLeu1.NW_012106252v1    C 0 C 0
s colAng1.NW_012122154v1     2245602  60 +  4569836 aaagtgtatt----------------------------------------------------atttaaaaagttgattaatgttca----aacgttagcccagtcttgtatttctg
i colAng1.NW_012122154v1    C 0 N 0
s otoGar3.GL873537          22862985 116 + 28711273 aaaatgtgttgaaatttataaaatgagataatgttatgattgttctgtttttagtaaatgtgacttaaattgttgattcatgttcagatggatgttgaaccaaccttgcatttctg
i otoGar3.GL873537          I 169 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e dasNov3.JH570468            632890 2779 -   852752 I
e saiBol1.JH378271           1888661 14031 +  3513951 T

a score=455671.000000
s hg38.chr17_JH159148v1_alt    70625 94 +    88070 aaaacaattcatgtggttacgatcatatgtatatgccattggattttatttacttatattttgtttaggatatttacTATCATTGCATTCCAAA
s panTro5.chr17             16375640 94 + 83181570 aaaacaattcatgtggttacgatcatatgtatatgccactggattttatttacttatattttgtttaggatatttacTATCATTGCATTCCAAA
i panTro5.chr17             C 0 C 0
s panPan2.chr17             16297817 94 + 83442489 aaaacaattcatgtggttacgatcatatgtatatgccactggattttatttacttatattttgtttaggatatttacTATCATTGCATTCCAAA
i panPan2.chr17             C 0 C 0
s gorGor5.CYUI01015385v1     4133244 94 +  4267968 aaaacaattcatgtggttacgatcatatgtatatgccactggattttatttacttatattttgtttaggatatttacTATCATTGCATTCCAAA
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2117741 94 -  2193130 aaaacaattcatgtggttatgatcatatgtatatgccactggattttatttacctatattttgtttaggatatttacTATCATTGCATGCCAAA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30177971 94 - 77216781 aaaacaattcatgtggttatgatcatatgcatatgctactggattttgcttatttatattttgtttgggatACTTACGATCATTGCATTCCAAA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28088285 94 - 80997621 aaaacaattcatgtggttatgatcatatgcatatgctactggattttgcttatttatattttgtttgggatACTTACGATCATTGCATTCCAAA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2134713 94 + 10377808 aaaacaattcatgtggttatgatcatatgcatatgctactggattttgcttatttatattttgtttgggatACTTACGATCATTGCATTCCAAA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2041439 94 -  8458610 aaaacaattcatgtggttatgatcatatgcatatgctactggattttgcttatttatattttgtttgggatacttacaATCATTGCATTCCAAA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64974571 94 + 75148670 aaaacaattcatgtggttatgatcatatgcatacgctactggattttgcttatttatattttgtttgggatACTTACGATCATTGCATTCCAAA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2236317 94 +  4244037 aaaacaattcatgtggttatgatcatatgcatatgctactggattttgcttatttatattttgtttgggatacttacaATCATTGCATTCCAAA
i manLeu1.NW_012106252v1    C 0 C 0
s otoGar3.GL873537          22863101 49 + 28711273 aaaacaattcatgtggttatgaccatatgtatatggcac--gatattgatt-------------------------------------------
i otoGar3.GL873537          C 0 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e dasNov3.JH570468            632890 2779 -   852752 I
e saiBol1.JH378271           1888661 14031 +  3513951 T

a score=656346.000000
s hg38.chr17_JH159148v1_alt    70719 125 +    88070 AATATATTCTCCTATTCTTACTCTATTTCCTCTACCTTCTCTAAGTAAAGAAATTCCGAATATAGCAAAATT-CCTACCCTTCTGTG-CCCAATTTGACCTTGATGTGACCCCCTGTATTGGTTTTT
s panTro5.chr17             16375734 125 + 83181570 AATATATTCTCCTATTCTTACTCTATTTCCTCTACCTTCTCTAAGTAAAGAAATTCCGAATATAGCAAAATT-CCTACCCTTCTGTG-CCCAATTTGACCTCGATGTGACCCCCTGTATTGGTTttt
i panTro5.chr17             C 0 N 0
s panPan2.chr17             16297911 125 + 83442489 AATATATTCTCCTATTCTTACTCTATTTCCTCTACCTTCTCTAAGTAAAGAAATTCCGAATATAGCAAAATT-CCTACCCTTCTGTG-CCCAATTTGACCTTGATGTGACCCCCTGTATTGGTtttt
i panPan2.chr17             C 0 N 0
s gorGor5.CYUI01015385v1     4133338 124 +  4267968 AATATATTCTCCTATTCTTACTCTATTTCCTCTACCTTCTCTAAGTAAAGAAATTCTGAATATAGCAAAATT-CCTACCCTTCTGTG-CCCAATTTGACCTTGATGTGACCCCC-GTATTGGTTTTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2117835 124 -  2193130 AATATATTCTCCTATTCTTACTCTATTTCCTCTACCTTCTCTAAGTAAAGAAATTCTGAATATAGCAAAATT-CCTACCCTTCTGTG-CCCAATTTGACCTTGATGTGACCCCT-GTATTGGTTTTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30178065 121 - 77216781 AATATATTCTCCCATTCTTACTCTATTTCCTCTACCTTCTC----TAAAGAAATTCTGAATACAACAAAATT-CCTACCCTTCTGTG-CCAAATTTGACCTTGATGTGACCCCCTGTATTGGTTTTT
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28088379 121 - 80997621 AATATATTCTCCCATTCTTACTCTATTTCCTCTACCTTCTC----TAAAGAAATTCTGAATACAACAAAATT-CCTACCCTTCTGTG-CCAAATTTGACCTTGATGTGACCCACTCTATTGGTTTTT
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2134807 121 + 10377808 AATATATTCTCCCATTCTTACTCTATTTCCTCTACCTTCTC----TAAAGAAATTCTGAATACAACAAAATT-CCTACCCTTCTGTG-CCAAATTTGACCTTGATGTGACCCCCTGTATTGGTTTTT
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2041533 121 -  8458610 AATATATTCTCCCATTCTTACTCTATTTCCTCTACCTTCTC----TAAAGAAATTCTGAATACAACAAAATT-CCTACCCTTCTGTG-CCAAATTTGACCTTGATGTGACCCCCTGTATTGGTTTTT
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64974665 121 + 75148670 AATATATTCTCCCATTCTTACTCTATTTCCTCTACCTTCTC----TAAAGAAATTCTGAATACAGCAAAATT-CCTACCCTTCTGTG-CCCAATTGGACCTTGATGTGACCCCCTGTATTGGTTTTT
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2236411 120 +  4244037 AATATATTCTCCCATTCTTACTCTATTTCCTCTACCTTCTC----TAAAGAAATTCTGAATACAAC-AAATT-CCTACCCTTCTGTG-CCAAATTTGACCTCGATGTGACCCCCTGTATTGGTTTTT
i manLeu1.NW_012106252v1    C 0 C 0
s otoGar3.GL873537          22863150 111 + 28711273 --------------tgcttattctatGTCCTCTACCTTCTTTAAATAAATAAGTTCTAAACACTCCAGGATT-TGTGCCCTATGGTA-CCCAATTTGACCTTGATGTTATTCCCTGTATTAGCATTT
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            635669 126 -   852752 AATTTATTCTTCTGTTGTTACTCT-CTTCTTTGGTGTTCTCTAAATGAGTTAGTTGTGATTGTGGCAAGATTCCCCATTCTCCTGAGATTCAGTTTGGTTTCAGTGTTAATGTCTATATTGATGTTT
i dasNov3.JH570468          I 2779 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e saiBol1.JH378271           1888661 14031 +  3513951 T

a score=1440044.000000
s hg38.chr17_JH159148v1_alt    70844 395 +    88070 CTAAAGGCAATTTCATGCCCCATGAAATACTCTAGCAGTTCTATTGCAGAGTGTGGGCTTGGGGATCAACAGTTCTTTTTTCAACAGGG-----------------------------GCACTAGACTATCCCATGGGTCCCTTTCAAACACAC--ACACCCCATGGGGGGAACTCCCAGGAGATACTTGTAGCCCAGTTGTAGT-CTTTCTTATCTACTTTG-ACAGAAACAATGAAGTCTAGCCCAATTATCTGAAATCTGTACTTAGTCATTTCTACAACAATATTGTGTTAATCTAGAAAACGTGAGTGAGGAATTGTCTTTAATCTGCAACTCAAATTATAGGAGGAGGAAATTACATCAGCATATGTAGGTATCAGTTAAATTCATTGAGGAGAACC-------TGGGGGAAAGTGTGATTGGTGGATC
s gorGor5.CYUI01015385v1     4133462 397 +  4267968 CTAAAGGCAATTTCATGCCCCATGAAATACTCTAGCAGTTCTATTGCAGAGTGTGGGCTTGGGGATCAACAGTTCTCTTTTCAACAGGG-----------------------------GCACTAGAGTATCCCATGGGTCCCTTTCTGACACACAGACACCCCATGGAGGGAACTCCCAGGAGATACTTGTAGCCCAGTTGTAGT-CTTTCTTATCTACTTTG-ACAGAAACAATGAAGTCTAGCCCAACTATCTGAAATCTGTACTTAGTCATTTCTACAACAATATTGTATTAATCTAGAGAACATGTGTGAGGAATTGTCTTTAATCTGCAACTCAAATTATAGGAGGAGGAAATTACAGCAGGATATGTAGGTACCAGTTAAATTCATTGAGGAGAACC-------TGGGGGAAAGTGTGATTGGTGGATC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2117959 395 -  2193130 CTGAAGGCAATTTCATGCCCCATGAAATAGTCTAGCAATTCTATTGCAGAGCGTGGGCTTGGGGCTCAACAGCTCTCTTTTCAACAGGG-----------------------------GCACTAGACTATCCCATGGGTCCCTTTCTGACACAC--ACACCCCATGGGGGGAACTCCCAGGAGATACTTGTAGCCCAGTTGTAGT-CTTTCTTATCTACTTTG-ACAGAAACAATGAAGTCTAGCCCAATTATCTGGAATCTATACTTAGTCATTTCTACAACAATATTGTATTAATCTAGAGAACTTGAGTGAGGAATTGTCTTTAATCTGCAACTCAAATTATAGGAGGAGGAAATTACATCAGGATATGTAGATATCACTTAAATTCATTGAGGAGAACC-------TGGGGGAAAGTGTGATTGGTGGATC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac8.chr16             30178186 392 - 77216781 CTGAAGGCAATTTCATGTCCCATGAGATACTCTAGCAGTTCTGTTGCAGAGTGTGGGCT-GGGGGTCAACAGTTCTC--TTCAGCAGGA-----------------------------GGACTAGACTATCCCATGGATCCCTTTCTGACACAC--ACATCCCATGGGGGGAACTCCCAGGAGATACTTGTAGCCCAGTTGTTGT-CTTTCTTATCTTCTTTG-ACAGAAACAATGAAGTCTAGCCCAATTATCTGAAATCTATGCTTAGTCATTTCTGCAACAATACTGTATTAATCTAGAGAACGTGAGTAAGGAGTTGTCTTTAATCTGCAACTCAAATTATAGGAGGAGGAAATTACATCAGGATATGTAGGTATCAGTTAAATTCATTGAGGAGAACC-------TGGGGGAAAATGTGATTGGTGGATC
i rheMac8.chr16             C 0 I 128
s macFas5.chr16             28088500 392 - 80997621 CTGAAGGCAATTTCATGTCCCATGAGATACTCTAGCAGTTCTGTTGCAGAGTGTGGGCT-GGGGGTCAACAGTTCTC--TTCAGCAGGA-----------------------------GGACTAGACTATCCCATGGATCCCTTTCTGACACAC--ACATCCCATGGGGGGAACTCCCAGGAGATACTTGTAGCCCAGTTGTTGT-CTTTCTTATCTTCTTTG-ACAGAAACAATGAAGTCTAGCCCAATTATCTGAAATCTATGCTTAGTCATTTCTGCAACAATACTGTATTAATCTAGAGAACGTGAGTAAGGAGTTGTCTTTAATCTGCAACTCAAATTATAGGAGGAGGAAATTACATCAGGATATGTAGGTATCAGTTAAATTCATTGAGGAGAACC-------TGGGGGAAAATGTGATTGGTGGATC
i macFas5.chr16             C 0 I 98
s macNem1.NW_012014910v1     2134928 392 + 10377808 CTGAAGGCAATTTCATGTCCCATGAGATACTCTAGCAGTTCTGTTGCAGAGTGTGGGCT-GGGGGTCAACAGTTCTC--TTCAGCAGGA-----------------------------GGACTAGACTATCCCATGGGTCCCTTTCTGACACAC--ACATCCCATGGGGGGAACTCCCAGGAGATACTTGTAGCCCAGTTGTTGT-CTTTCTTATCTTCTTTG-ACAGAAACAATGAAGTCTAGCCCAATTATCTGAAATCTATGCTTAGTCATTTCTGCAACAATACTGTATTAATCTAGAGAACGTGAGTAAGGAGTTGTCTTTAATCTGCAACTCAAATTATAGGAGGAGGAAATTACATCAGGATATGTAGGTATCAGTTAAATTCATTGAGGAGAACC-------TGGGGGAAAATGTGATTGGTGGATC
i macNem1.NW_012014910v1    C 0 I 128
s cerAty1.NW_012006043v1     2041654 392 -  8458610 CTGAAGGCAATTTCATGTCCCATGAGATACTCTAGCAGTTCTGTTGCAGAGTGTGGGCT-GGGGGTCAACAGTTCTC--TTCAGCAGGG-----------------------------GGACTAGACTATCCCATGGGTCCCTTTCTGACACAC--ACATCCCATGGGGGGAACTCCCAGGAGATACTTGTAGCCCAATTGTTCT-CTTTCTTATCTCCTTTG-ACAGAAACAAAGAAGTCTAGCCCAATTATCTGAAATCTATGCTTAGTCATTTCTACAACAATACTGTATTAATCTAGAGAACGTGCGTAAGGAGTTGTCTTTAATCTGCAACTCAAATTATAGGAGGAGGAAATTACATCAGGATATGTAGGTATCAGTTAAATTCATTGAGGAGAACC-------TGGGGGAAAATGTGATTGGTGGATC
i cerAty1.NW_012006043v1    C 0 I 219
s chlSab2.chr16             64974786 391 + 75148670 CTGGAGGCAATTTCATGTCCCATGAGATACTCTAGCAGTTCTGTTGCAGAGTGTGGGCT--GGGGTCAACAGTTCTC--TTCAGCAGGG-----------------------------GGACTAGACTATCCCATGGGTCCCTTTCTGACACAC--ACACCCCATGGGGGGAACTCCCAGGAGATACTTGTAGCCCAATTGTTGT-CTTTCTTATCTCCTTTG-ACAGAAACAATGAAGTCTAGCCCAATTATCTGAAATCTATGCTTAGTCATTTCTACAACAGTACTATATTAATCTAGAGAATGTGAGTAAGGAGTTGTCTTTAATCTGCAACTCAAATTATAGGAGGAGGAAATTACATCAGGATATATAGGTATCAGTTAAATTCGTTGAGGAGAACC-------TGGGGGAAAGTGTGATTTGTGGATC
i chlSab2.chr16             C 0 I 132
s manLeu1.NW_012106252v1     2236531 392 +  4244037 CTGAAGGCAATTTCATGTCCCATGAGATACTCTAGCAGTTCTGTTGCAGAGTGTGGGCT-GGGGGTCAACAGTTCTC--TTCAGCAGGG-----------------------------GGACTAGACTATCCCATGGGTCCCTTTCTGACACAC--ACATCCCATGGGGGGAACTCCCAGGAGATACTTGTAGCCCAATTGTTGT-CTTTCTTATCTCCTTTG-ACAGAAACAATGAAGTCTAGCCCAATTATCTGAAATCTATGCTTAGTCATTTCTACAACAATACTGTATTAATCTAGAGAACGTGAGTAAGGAGTTGTCTTTTATCTGCAACTCAAATTATAGGAGGAGGAAATTACATCAGGATATGTAGGTATCAGTTAAATTCATTGAGGAGAACC-------TGGGGGAAAATGTGATTGGTGGATC
i manLeu1.NW_012106252v1    C 0 I 81
s otoGar3.GL873537          22863261 423 + 28711273 CTGAGTGCATTTTCATGCCCGATAAAATACACTAGCAGAGTTATTGTATGTTCTGAGCCTGGGGAACAACTGTTTCTTTTTAAATAGGAAAAGTACACTATAACATGCACTTTAAGATGCACTATAACATCCCACAGGTCCCTTTAAAACACAC--AAA--CCATG--GGGAATTCCAAGGAGAAACATATAGCCAAATTGCAGA-ATTTGTTACCTACTTTGAACAGAAATAGCAAAGTCTGGATCAATTTTCTAAAATTAATAATTGTTTGTATCT---ATAATACTGTGTTAATACAGAGAACATAAGTGAGCAATTGCACTTAACTTTTAACTCAAAGTATAGGAAGAGGAAATTATTCTGGGATTTATAAGCAGCAGCTAAAGTTATTGAAGAAAACCTGGAGGGTGGGGGGAGGTGTGA--GGTGAATC
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            635795 365 -   852752 CTGAAGGCAC----------------ATAAACTAGTAATGCTATTG--AAGTTTTAGTTCAGTGTGCAACAGTCTTCTGTCATATGGGT-----------------------------ACATTACAATAGTTCAAGGCTTACTTTCTGATGCAC------TGCTTTGGAGGAATTCCACAGAAAAACTTGTAACCAAATAGTTGAGTTTTGTTTTCCTCATTA-ACAGAGGCAACAAATTTGGGTTCAATTTTCTGAAATTAA--ATTGATCACATCTACAAAAATTTTATATTTTTCTAGAGAACATTAATGAAGAGTTGTCCTTATCACTCAGCTCAAATCATCAACAGAAAAAATTACTTCATGACCAGTA-ACATCAGCACAA------GAAGGGAAAC-------TAGGAAAAAGTGCGATTGGTGGATC
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e saiBol1.JH378271           1888661 14031 +  3513951 T

a score=15753.000000
s hg38.chr17_JH159148v1_alt    71239 36 +    88070 CCAAATAACGAGACAGTGGTATCAGATTATCACTTG
s gorGor5.CYUI01015385v1     4133859 36 +  4267968 CCAAATAACGAGATAGTGGTATCAGATTATCACTTG
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2118354 36 -  2193130 ACAAATAACAATATAGTGGTATCAGATTATCACTTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s otoGar3.GL873537          22863684 36 + 28711273 ATAAGTAAAAGGCTGTTGGTATCAGATCATCGCCTG
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            636160 36 -   852752 ACTCCTTACAAACCAATGGTTCCAGATGATCAGCTT
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e manLeu1.NW_012106252v1     2236923 81 +  4244037 I
e saiBol1.JH378271           1888661 14031 +  3513951 T
e chlSab2.chr16             64975177 132 + 75148670 I
e cerAty1.NW_012006043v1     2042046 219 -  8458610 I
e macNem1.NW_012014910v1     2135320 128 + 10377808 I
e macFas5.chr16             28088892 98 - 80997621 I
e rheMac8.chr16             30178578 128 - 77216781 I

a score=1705.000000
s hg38.chr17_JH159148v1_alt    71275 2 +    88070 AT
s gorGor5.CYUI01015385v1     4133895 2 +  4267968 AT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2118390 2 -  2193130 AT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s manLeu1.NW_012106252v1     2237004 2 +  4244037 AT
i manLeu1.NW_012106252v1    I 81 I 1
s otoGar3.GL873537          22863720 2 + 28711273 AT
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            636196 2 -   852752 AG
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e saiBol1.JH378271           1888661 14031 +  3513951 T
e chlSab2.chr16             64975177 132 + 75148670 I
e cerAty1.NW_012006043v1     2042046 219 -  8458610 I
e macNem1.NW_012014910v1     2135320 128 + 10377808 I
e macFas5.chr16             28088892 98 - 80997621 I
e rheMac8.chr16             30178578 128 - 77216781 I

a score=-916.000000
s hg38.chr17_JH159148v1_alt    71277 4 +    88070 -TAAC
s gorGor5.CYUI01015385v1     4133897 4 +  4267968 -TAAC
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2118392 4 -  2193130 -TAAC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16             28088990 4 - 80997621 -TAAC
i macFas5.chr16             I 98 I 26
s manLeu1.NW_012106252v1     2237007 3 +  4244037 -TAT-
i manLeu1.NW_012106252v1    I 1 C 0
s otoGar3.GL873537          22863722 4 + 28711273 -CAAC
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            636198 4 -   852752 AAAA-
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e saiBol1.JH378271           1888661 14031 +  3513951 T
e chlSab2.chr16             64975177 132 + 75148670 I
e cerAty1.NW_012006043v1     2042046 219 -  8458610 I
e macNem1.NW_012014910v1     2135320 128 + 10377808 I
e rheMac8.chr16             30178578 128 - 77216781 I

a score=1463754.000000
s hg38.chr17_JH159148v1_alt    71281 397 +    88070 AAACACATAAAACATGAGAGCCCATGCAGCTCTCTAACAACAGGCCTATTGCACTGAGTTTTACATGTAGATTTTTGAAGAGAGTGGAAAGTAAACACTGAGTTT-CCTGAGAATATAAGTAGACGTGTATGACA--GAATATCATTATCGGTTCTTAAATATTATGGCAGAAATGAATGAAGTGAAAGTTTACACTAACATGTAAGAAATATCACTATTTAG-ACCCTACAGAGGGATGGCTTTGGATAGAAaaata----agattagattgcccttggaa-------cttcaaagttacacaaaaagaaacagagcaaagttatgcacaggcatcttaaaaagaatgaatggcttcgaagctagccaaatttATTCTAGTCTGG-TAAGGA----TTTGAAA-ATGA----A----TATTTCTT
s gorGor5.CYUI01015385v1     4133901 397 +  4267968 AAACACCTAAAACATGAGAGCCCATGCAGCTCTCTAACAACAGGCCTATTGCACTGAGTTTTACATGTAGATTTTTGAAGAGAGGGGAAAGTAAACACTGAGTTT-CCTGAGAATATA---AGACATGTATGACA--GAATATCATTATCGGTTCTTAAATATTAT-GCAGAAATGAATGAAGTGAAAGTTTACACTAACATGTAAGAAATATCACTATTTAG-GCCCTACAGAGGGATGGCTTTGGATAGAAaaataagagagattagaatgctcttggaa-------cttcaaagttacacaaaaagaaacagagcaaagttatgcacaggcatcttgaaaagaatgaatggcttcgaagctagccaaatttattctagtctga-tAAGGA----TTTGAAA-ATGA----A----TATTTCTT
i gorGor5.CYUI01015385v1    C 0 C 0
s nomLeu3.chrUn_GL397460_1   2118396 401 -  2193130 AAACACATAAAACATGAGAGCCCATGCAGCTCTCTAACAACAGGCCTACTGCACTGAGTTTTACATGTAGATTTTTGAAGAGAGTGGAAAGAAAACACTGAGTTT-CCTGAGAATATAAGTAGACATGTATGACA--GAATATCATAATCGGTTCTTAAATATTATGGCAGAAATGAATGAAGTGAAAGTTTACACTAACATGTAAGAAAtatcactatttag-gccctatagagagatggctttggacagaaaaataagagagattagattgcccttggaa-------cttcaaagttacacaaaaagaaacagagcaaatttatgcacagacatcttaaaatgaatgaatggcttcgaggctagccaaatttattctagtctga-tAAGGA----TTTCAAA-GTGA----A----TATTTCTT
i nomLeu3.chrUn_GL397460_1  C 0 N 0
s rheMac8.chr16             30178706 402 - 77216781 AAACATACAAAACATGAGAGCCCATGCAGCTCTCTAACAACAGGGCTATTGCACTGAGTTTTACATGTAGAGTTTTGAAGATAGTGGAAAGGAAACACTGAGTTT-CCTGAGAATATAAGGAGACGTGTGTGATA--GAATATCATAATCGGTTCTTAAATATTATGGCAGAAATGAATGAAGTGAAAGTTTACATTAACATGTAAGAAGtatcactatttag-gccctacagagagatggctttggacagaaaaataagagaagttagattgcccttggaa-------cttcaaagttacacaaaaagaaaaagagcaaagttatgcaaagccatcttaaaaagaatgaatggctttgaggctagccaaatttatactagtctga-tAAGGA----TTTGAAAAATGA----A----TATTTCTT
i rheMac8.chr16             I 128 C 0
s macFas5.chr16             28089020 402 - 80997621 AAACATACAAAACATGAGAGCCCATGCAGCTCTCTAACAACAGGGCTATTGCACTGAGTTTTACATGTAGAGTTTTGAAGATAGTGGAAAGGAAACACTGAGTTT-CCTGAGAATATAAGGAGACGTGTGTGATA--GAATATCATAATCGGTTCTTAAATATTATGGCAGAAATGAATGAAGTGAAAGTTTACATTAACATGTAAGAAGtatcactatttag-gccctacagagagatggctttggacagaaaaataagagaaattagattgcccttggaa-------cttcaaagttacacaaaaagaaaaagagcaaagttatgcaaagccatcttaaaaagaatgaatggctttgaggctagccaaatttatactagtctga-tAAGGA----TTTGAAAAATGA----A----TATTTCTT
i macFas5.chr16             I 26 C 0
s macNem1.NW_012014910v1     2135448 402 + 10377808 AAACATACAAAACATGAAAGCCCATGCAGCTCTCTAACAACAGGGCTATTGCACTGAGTTTTACGTGTAGAGTTTTGAAGATAGTGGAAAGGAAACACTGAGTTT-CCTGAGAATATAAGGAGACGTGTGTGATA--GAATATCATAATCGGTTCTTAAATATTATGGCAGAAATGAATGAAGTGAAAGTTTACATTAACATGTAAGAAGtatcactatttag-gccctacagagagatggctttggacagaaaaataagagaaattaaattgcccttggaa-------cttcaaagttacacaaaaagaaaaagagcaaagttatgcaaagccatcttaaaaagaatggatggctttgaggctagccaaatttATACTAGTCTGA-TAAGGA----TTTGAAAAATGA----A----TATTTCTT
i macNem1.NW_012014910v1    I 128 C 0
s cerAty1.NW_012006043v1     2042265 402 -  8458610 AAACATACAAAACATGAGAGCCCATGCAGCTCTCTAACAACAGGGCTATTGCACTGAGTTTTACATGTGGAGTTTTGAAGATAGTGGAAAGGAAACACTGAGTTT-CCTGAGAATATAAGGAGACGTGTATGATA--GAATATCATAAGCAGTTCTTAAATATTATGGCAGAAATGAATGAAGTGAAAGTTTACATTAACATGTAAGAAGtatcactatttag-gccctacagagagatggctttggacagaaaaataagagaaattagattgcccttggaa-------cttcaaagttacacaaaaagaaaaagagcaaagttatgcaaagccatcttaaaaagaatgaatggctttgaggctagccaaatttATACTAGTCTGA-TAAGGA----TTTGAAAAATGA----A----TATTTCTT
i cerAty1.NW_012006043v1    I 219 C 0
s chlSab2.chr16             64975309 395 + 75148670 AAACATACAAAACATGAGAGCCCATGCAGCTCTCTAACAACAGGTCTATTGCACTGAGTTTTACATGTAGATTTTTGAAGAGAGTGCAAAGGAAACACTGAGTTT-CCTGAGAATATAAGGAGACGTATATGACA--GAATATCATAATCGGTTCTTAAATATTATGGCAGAAATGAATGAAGTGAAAGTTTACACTAACATGTAAGAAGTATCACTATTTAG-GCCCTACAGAGAGATGGCTTTGGACagaaaaataag-------agattgcccttggaa-------cttcaaagttacacaaaaagaaaaagagcaaagttatgcaaagccatcttaaaaagaatgaatggctttgaggctagccaaatttattctagtctga-tAAGGA----TTTGAAACACGA----A----TATTTCTT
i chlSab2.chr16             I 132 C 0
s manLeu1.NW_012106252v1     2237010 402 +  4244037 AAACATACAAAACATGAGAGCCCATGCAGCTCTCTAACAACAGGGCTATTGCACTGAGTTTTACATGTGGAGTTTTGAAGACAGTGGAAAGGAAACACTGAGTTT-CCTGAGAATATAAGGAGACGTGTATGATA--GAATATCATAATCGGTTCTTAAATATTATGGCAGAAATGAATGAAGTGAAAGTTTACACTAACATGTAAGAAGtatcactatttag-gccctacagagagatggctttggacagaaaaataagagaaattagattgcccttggat-------cttcaaagttacacaaaaagaaaaagagcaaagttatgcaaagccatcttaaaaagaatgaatggctttgaggctagccaaatttATACTAGTCTGA-TAAGGA----TTTGAAAAATGA----A----TATTTCTT
i manLeu1.NW_012106252v1    C 0 C 0
s otoGar3.GL873537          22863726 373 + 28711273 AAACACCTCAGACATGAAAGCCCATAGAAC-ATGTAAAGCCAGACCCAGTCCACTGAG-TTTACATGTAGATTTTAGTTGAGATTGGAGAGGAAATGCGGAGTTTGCCTGAGCATACTGTTAAACTTATATGACATGTAATATCATAATTGGC-----AAAATGATGGCAGAAATGAACCCAATAAAAGTGTACCCTAACACATAAGAAACATCACAGATTGG-ACACCACAGAGAGTTGTCATGGGACAGGAAAATAAGAGAGAATAGATTGCCCTTG--------------------------AAAGGAACAAATTAAAGCTATG------CACCTTA----GAATGAATGGTGTCAAGGCTGGCAGATCTTATTCCAGTCTGA-TGAGGA----GTCAAAACCTGAATTTA----TATTTCTT
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            636202 413 -   852752 AAACACACAAAATTTGAGAGTCAAGGCAACTTTCAAAATACATTCCTACCTCACTGAGTTTTACATTTAGAATTTGTAAGAC-GTGGGAAGT--ATCATGAGTTA-CCTGAATATATAATTAAACATATATGATGTGTAATATCCTAATTGGCTCTTAAATGACATGGCATAAGTAAACCTAATGAAAGCTTATACTAACATCTTAGATAGGTCACACTCTGGTACTCT----GAAAATTCTATAAAACCACATaagaagagagagaagattatccttggagtgtgactcttaaaaatatcataaaagagagcagagccaaaatatgtacaggcaatttaaagaaaaagaatggcttcaagattagc-aaatttactctagtctggttcaggatttgtttgaaaaatga----atgtgtATATCTT
i dasNov3.JH570468          C 0 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e saiBol1.JH378271           1888661 14031 +  3513951 T

a score=61504.000000
s hg38.chr17_JH159148v1_alt    71678 20 +    88070 ATATGGGAATGTGGCATTCA
s gorGor5.CYUI01015385v1     4134298 20 +  4267968 ATATGGGAATGTGGCATTCA
i gorGor5.CYUI01015385v1    C 0 C 0
s rheMac8.chr16             30179108 20 - 77216781 AAATGGGAATGGGGTATTCA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28089422 20 - 80997621 AAATGGGAATGGGGTATTCA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2135850 20 + 10377808 AAATGGGAATGGGGTATTCA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2042667 20 -  8458610 AAATGGGAATGGGGTATTCA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64975704 20 + 75148670 AAATGGGAATGGGGTATTCA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2237412 20 +  4244037 AAATGGGAATGGGGTATTCA
i manLeu1.NW_012106252v1    C 0 C 0
s otoGar3.GL873537          22864099 20 + 28711273 AAATAGGAGCagggtgttca
i otoGar3.GL873537          C 0 C 0
s dasNov3.JH570468            636615 20 -   852752 AAATGTAATTGGAGTAATTA
i dasNov3.JH570468          C 0 T 11792
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e saiBol1.JH378271           1888661 14031 +  3513951 T

a score=6552.000000
s hg38.chr17_JH159148v1_alt    71698 2 +    88070 AA
s gorGor5.CYUI01015385v1     4134318 2 +  4267968 AA
i gorGor5.CYUI01015385v1    C 0 C 0
s rheMac8.chr16             30179128 2 - 77216781 AA
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28089442 2 - 80997621 AA
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2135870 2 + 10377808 AA
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2042687 2 -  8458610 AA
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64975724 2 + 75148670 AA
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2237432 2 +  4244037 AA
i manLeu1.NW_012106252v1    C 0 C 0
s otoGar3.GL873537          22864119 2 + 28711273 aa
i otoGar3.GL873537          C 0 I 50595
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e dasNov3.JH570468            636635 11792 -   852752 T
e saiBol1.JH378271           1888661 14031 +  3513951 T

a score=9861467.000000
s hg38.chr17_JH159148v1_alt    71700 4121 +    88070 [encoded data, 4168 characters]
s gorGor5.CYUI01015385v1     4134320 4103 +  4267968 [encoded data, 4168 characters]
i gorGor5.CYUI01015385v1    C 0 C 0
s rheMac8.chr16             30179130 4083 - 77216781 [encoded data, 4168 characters]
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28089444 4084 - 80997621 [encoded data, 4168 characters]
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2135872 4079 + 10377808 [encoded data, 4168 characters]
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2042689 4085 -  8458610 [encoded data, 4168 characters]
i cerAty1.NW_012006043v1    C 0 C 0
s chlSab2.chr16             64975726 4096 + 75148670 [encoded data, 4168 characters]
i chlSab2.chr16             C 0 I 27
s manLeu1.NW_012106252v1     2237434 4055 +  4244037 [encoded data, 4168 characters]
i manLeu1.NW_012106252v1    C 0 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e dasNov3.JH570468            636635 11792 -   852752 T
e otoGar3.GL873537          22864121 50595 + 28711273 I
e saiBol1.JH378271           1888661 14031 +  3513951 T

a score=412286.000000
s hg38.chr17_JH159148v1_alt    75821 233 +    88070 cgtgcctggccttgagtgagtttcttaatccttagttctaatttgattgcactgtgatctgagagactgttttacttccaattatg-tggtgaaatttagagtgctatgttgtagtgagaagaatgtttattctgttgatttcaggtggagagttctgtagatgtctattaggtccac-ttggtccag--agttgatttcaagtcctgaatatccttg-ttaattttctgtctcattg
s gorGor5.CYUI01015385v1     4138423 233 +  4267968 cgtgcctagccttgagtgagtttcttaatccttagttctaatttgattgcactgtgatctgagagactgttttacttccaattatg-tggagaaatttagagtgctatgttgtggtgagaagaatgtttattctgttgatttggggtggagagttctgtagatgtctattagatccac-ttggtccag--agctgatttcaactcctgaatatccttg-ttaattttctgtctcattg
i gorGor5.CYUI01015385v1    C 0 C 0
s rheMac8.chr16             30183213 232 - 77216781 tgtgcccgaccttgagtgagtttcttaatcctgagttctaatttgattgcactgtgatctgagagactgttttacttccaattatg-tggtcaaacttagagtgttatgttgtactgagaagaatgtata-tctgttgatttggagtggagagttctgtagatgtctgttaggtccac-ttggtccag--agctgatttcaagtcctgaatatccttg-ttaattttctgtctcattg
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28093528 232 - 80997621 tgtgcccgaccctgagtgagtttcttaatcctgagttctaatttgattgcactgtgatctgagagactgttttacttccaattatg-tggtcaaacttagagtgttatgttgtactgagaagaatgtata-tctgttgatttggagtggagagttctgtagatgtctattaggtccac-ttggtccag--agctgatttcaagtcctgaatatccttg-ttaattttctgtctcattg
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2139951 236 + 10377808 tgtgcccgaccttgagtgagtttcttaatcctgagttctaatttgattgcactgtgatctgagagactgttttacttccaattatgctggtcaaacttagagtgttatgttgtactgagaagaatgtata-tctgttga-ttggagtggagagttctgtagatgtctattaggtccactttggtccagcaagctgatttcaagtcctgaatatccttgtttaattttctgtctctttg
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2046774 232 -  8458610 tgtgcccgaccttgagtgagtttcttaatcctgagttctaatttgattgcactgtgatctgagagactgttttacttccaattatg-tggtcaaacttagagtgttatgttgtactgagaagaatgtata-tctgttgatttggagtggagagttctgtagatgtctattaggtccac-ttggtccag--agctgatttcaagtcctgaatatccttg-ttaattttctgtctcattg
i cerAty1.NW_012006043v1    C 0 C 0
s manLeu1.NW_012106252v1     2241489 233 +  4244037 tgtgcctggccttgagtgagtttcttaatcctgagttctaatttgattgcactgtgatctgagagactgttttacttccaattatg-tggtcaaacttatagtgttatgttgtgctgagaagaatgtatattctgttgatttggggtggagagttctgtagatgtctattaggtccac-ttggtccag--agctgatttcaagtcctgaatatccttg-ttaattttctgtctcATTG
i manLeu1.NW_012106252v1    C 0 I 334
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e dasNov3.JH570468            636635 11792 -   852752 T
e otoGar3.GL873537          22864121 50595 + 28711273 I
e saiBol1.JH378271           1888661 14031 +  3513951 T
e chlSab2.chr16             64979822  27 + 75148670 I

a score=180833.000000
s hg38.chr17_JH159148v1_alt    76054 167 +    88070 ttctgtctgatattgacagtggggtgttaaagtct-cc--c----acttttttttttttgagatggagtcttgctctgtcgcccaggctgtagtgcggtggt-gtgatctcggttcactgcaacctccacttcctgggctca-------ctcctgcctcagcctcctgagtagctgggatta
s gorGor5.CYUI01015385v1     4138656 167 +  4267968 ttccgtgtaatattgacagtggggtgttaaagtct-cc--c---tttttttttttttttgagatggagtcttgctccgtcgcccaggctgtagtgcggtggt-gtgatctcggttcactgcaacct-cacttcctgggctca-------ctcctgcctcagcctcctgagtagctgggatta
i gorGor5.CYUI01015385v1    C 0 C 0
s rheMac8.chr16             30183445 174 - 77216781 ttctgtctaatattgacagttgagtgttaacgtct-cctac---ttttttttttttttttagatggagtct---tctgtcgcccaggctatagtgcagtggt-gcaatgttggttcactgcaacctccacctcctgggctcaagcaattctcctgcctcagcctcctgagtagctgggatta
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28093760 174 - 80997621 ttctgtctaatattgacagttgagtgttaacgtct-cctac---ttttttttttttttttagatggagtct---tctgtcgcccaggctatagtgcagtggt-gcaatgttggttcactgcaacctccacctcctgggctcaagcaattctcctgcctcagcctcctgagtagctgggatta
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2140187 172 + 10377808 -tctgtctaatattgacagttgagtgttaacgtctccctac---ttttttttttttttttagatggagtct---tctgtcgcccaggctatagtgcagtggt-gcaatcttggttcactgcaacctccacctcct-ggctcaagcaattctccc-ctgcagcctcctgagtagctgggatta
i macNem1.NW_012014910v1    C 0 C 0
s cerAty1.NW_012006043v1     2047006 173 -  8458610 ttctgtctaatattgacagtggagtgttaatgtct-cctactttttttttttttttttttagatggagtct---tctgtc-cccaggctat-gtgcagtggtggcgatcttggttcactgcaacctccacctcct-ggctcaagcaa--ctcctgcctcagcctcctgagtagctgggatta
i cerAty1.NW_012006043v1    C 0 I 200
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e manLeu1.NW_012106252v1     2241722 334 +  4244037 I
e dasNov3.JH570468            636635 11792 -   852752 T
e otoGar3.GL873537          22864121 50595 + 28711273 I
e saiBol1.JH378271           1888661 14031 +  3513951 T
e chlSab2.chr16             64979822  27 + 75148670 I

a score=94191.000000
s hg38.chr17_JH159148v1_alt    76221 132 +    88070 taggcacgtgccacaatgcctggttaa-----------tttttttttgtatttttagtagagacggggtttcaccatgttatccaggatggtctccatctcctgac-ctcatgatctgcccg-cctcggcctcccaaagtgctgg
s gorGor5.CYUI01015385v1     4138823 135 +  4267968 aaggcacgtgccacaatgcctggttaa--------ttttttttttttgtatttttagtagagacggggtttcaccatgttatccaggatggtctccatctcctgac-ctcatgatctgcccg-cctcggcctcccaaagtgctgg
i gorGor5.CYUI01015385v1    C 0 C 0
s rheMac8.chr16             30183619 140 - 77216781 caggcacgagccaccatgcctgct--a-tttttttttttttttttttgtatttttagtagagactgggtttcactgtgttagccaggatggtctcgatctcctgac-cttgtgatctgcccg-cctcggcctcccaaagtgctgg
i rheMac8.chr16             C 0 C 0
s macFas5.chr16             28093934 141 - 80997621 caggcacgagccaccatgcctgct--attttttttttttttttttttgtatttttagtagagactgggtttcactgtgttagccaggatggtctcgatctcctgac-cttgtgatctgcccg-cctcggcctctcaaagtgctgg
i macFas5.chr16             C 0 C 0
s macNem1.NW_012014910v1     2140359 134 + 10377808 caggcacgagcca-catg-ctgct--a-----cttttttttttttttgtatttttagtagagact-ggtttcactgtgttagccaggatggtctcgatctcctgacacttgtgatctgcccgccctcggcctc-caaagtgctgg
i macNem1.NW_012014910v1    C 0 I 7289
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e manLeu1.NW_012106252v1     2241722 334 +  4244037 I
e dasNov3.JH570468            636635 11792 -   852752 T
e otoGar3.GL873537          22864121 50595 + 28711273 I
e saiBol1.JH378271           1888661 14031 +  3513951 T
e chlSab2.chr16             64979822  27 + 75148670 I
e cerAty1.NW_012006043v1     2047179 200 -  8458610 I

a score=9046.000000
s hg38.chr17_JH159148v1_alt    76353 19 +    88070 gattactgatgtgagccac
s gorGor5.CYUI01015385v1     4138958 19 +  4267968 gattactgatgtgagccac
i gorGor5.CYUI01015385v1    C 0 C 0
s rheMac8.chr16             30183759 19 - 77216781 gattacaggcgtgagccac
i rheMac8.chr16             C 0 I 33
s macFas5.chr16             28094075 19 - 80997621 gattacaggcgtgagccac
i macFas5.chr16             C 0 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e manLeu1.NW_012106252v1     2241722 334 +  4244037 I
e dasNov3.JH570468            636635 11792 -   852752 T
e otoGar3.GL873537          22864121 50595 + 28711273 I
e saiBol1.JH378271           1888661 14031 +  3513951 T
e chlSab2.chr16             64979822 27 + 75148670 I
e cerAty1.NW_012006043v1     2047179 200 -  8458610 I
e macNem1.NW_012014910v1     2140493 7289 + 10377808 I

a score=1336.000000
s hg38.chr17_JH159148v1_alt    76372 9 +    88070 catactcag
s gorGor5.CYUI01015385v1     4138977 9 +  4267968 cacactcag
i gorGor5.CYUI01015385v1    C 0 C 0
s macFas5.chr16             28094094 9 - 80997621 tgcacccgg
i macFas5.chr16             C 0 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e manLeu1.NW_012106252v1     2241722 334 +  4244037 I
e dasNov3.JH570468            636635 11792 -   852752 T
e otoGar3.GL873537          22864121 50595 + 28711273 I
e saiBol1.JH378271           1888661 14031 +  3513951 T
e chlSab2.chr16             64979822 27 + 75148670 I
e cerAty1.NW_012006043v1     2047179 200 -  8458610 I
e macNem1.NW_012014910v1     2140493 7289 + 10377808 I
e rheMac8.chr16             30183778 33 - 77216781 I

a score=27631.000000
s hg38.chr17_JH159148v1_alt    76381 306 +    88070 ccttgagtgagtttcttaatcctgagttctaatttcatcgcactgtgatctcagagactgtttgttatgatttccattcttttgcatttgctgaggaatgttttatttttaattatgtggtcaattttagagtaagtgctatgtggtgctgagaaaaatgtatattctgttgatttggggtggagagttctgtagatatctactaggtctgcttggcccagagctgagttcaagtcctgaatatctttgttaattttctgtcttgttgatctgtcgaatactgacagtggggtgttaaagtctctc
s gorGor5.CYUI01015385v1     4138986 305 +  4267968 ccttgagtgagtttcttaatcctgaattctaatttcattgcactgtgatctcagagactgtttgttatgatttccattcttttgcatttgctgaggaatgttttatttttaattatgtggtcagttttagagtaagtgctatgtggtgctgagaaaaatgtatattctgttgatttggggtggagagttctatagatatctactaggtctgcttggcccagagctgagttcaagtcctgaatatc-ttgttaattttctgtcttgttgatctgtctaatactgacagtggggtgttaaagtctctc
i gorGor5.CYUI01015385v1    C 0 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e manLeu1.NW_012106252v1     2241722 334 +  4244037 I
e dasNov3.JH570468            636635 11792 -   852752 T
e otoGar3.GL873537          22864121 50595 + 28711273 I
e saiBol1.JH378271           1888661 14031 +  3513951 T
e chlSab2.chr16             64979822  27 + 75148670 I
e cerAty1.NW_012006043v1     2047179 200 -  8458610 I
e macNem1.NW_012014910v1     2140493 7289 + 10377808 I
e macFas5.chr16             28094103   0 - 80997621 C
e rheMac8.chr16             30183778  33 - 77216781 I

a score=2794.000000
s hg38.chr17_JH159148v1_alt    76687 30 +    88070 acta--tttttttttttaagatggagtcttgc
s gorGor5.CYUI01015385v1     4139291 32 +  4267968 actatttttttttttttaagatggagtcttgc
i gorGor5.CYUI01015385v1    C 0 C 0
s macFas5.chr16             28094103 20 - 80997621 ACTAtttttttttttt----------tttt--
i macFas5.chr16             C 0 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e manLeu1.NW_012106252v1     2241722 334 +  4244037 I
e dasNov3.JH570468            636635 11792 -   852752 T
e otoGar3.GL873537          22864121 50595 + 28711273 I
e saiBol1.JH378271           1888661 14031 +  3513951 T
e chlSab2.chr16             64979822 27 + 75148670 I
e cerAty1.NW_012006043v1     2047179 200 -  8458610 I
e macNem1.NW_012014910v1     2140493 7289 + 10377808 I
e rheMac8.chr16             30183778 33 - 77216781 I

a score=4697474.000000
s hg38.chr17_JH159148v1_alt    76717 2747 +    88070 tctgtcacccaggctggagtgcagtggcacgatcttggctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagactctccagtagctgggattacaggtgcgtgccaccatgctcagctcatttttgtattttttagtagagatggggtttcaccatgctcgccaggctggtcttgaactcttgacctcatgatccacccaccttggcctcccaaaacgctgggattacaggtgtgagtcaccatgcccggccagtctcccattattattgtgtgggagtctaagtctttttgtagggctctaagaacttgctttataaatccgggtgctcctgtattgggtgcatatatgcttaggttaggtttctcttcttgttgcattgattcctttaccattatgtaatgccc---tttgtcttttttgatatttgttggtttaaagtctgttttatcagaggccaggattgcaacacctgc----ttttttt-ttgttgctttccatttgcttggtaaatattcctccatcactttattttgggcctatgtgtgtcttcgcatgtgagacgggtctgatgaatacagtataccgataggtctcaattttcgcatgtgagacaggtctgatgaatacagtacaccgataggtcttaattctttatccaatttgccagtgtgcgtcttttaattggggcatttagcccatttacttttaaggttaacattgttatatgtgaatttgatcctgtctttatgatgccagctggttattttgcccattagttgatgcagtttcttcatagtgtcgatggactttaaaatttggtatgtttttgcagtggctggtaccagttttttctttccatatttagtgcttccttcaggagctcttgtaaggcaggactggtggtgacaatatccttcaccatttgcttgtctgtaaaggattttatttctcctttacttatgaagcttagtttggctggatatgagattctgggttgaaagttcttttatttaagaatgttgaatattggcccccactctcttctggcttctagggtatctgcagagagatccactattagtctgatgggcttcctggcttccctttgtgggtaacccgacctttctctttggctgcccttaaca-ttttttccttcatttcaaccttggtgaatctgacaattatgtgtcttggggttgctcttctggaggagtatctttgtggtgttctctgtatttcctaaatttgaatgttggcctgtcttgctaggttggggaagttctcctggataatatcctgaagtgtgttttctaactcggttccattctccccatcactttcaggtacaccaatcaaacataggtttggtcttttcacatagtcccatatttcttggaggctttgttcattcctttttattcttttttctctaatcttgtcttcacgctttatttcattaagttgatcttgaatctctgatatcctttcttctgcttgatccatttggtcattgatacttgtatatgcttcacaaaattctcgtgctgtgtttttcagctacatcaggtcatttatgttcttttctaaactgattattctagttagcagttcctgtaacattttataaaggttcttggcttccttgaattgggttagaacatgcacctttagctcagaggagtttgttattacccaccttctgaaacctacttctgtcaattcatcaaacttattctctgtccagatttgttcccttgctggtgaggagttgtaatcctttggaagagaagaggcattctggtttttggaattttcagccttttcttgtgctggtttttcctcatcttcttggatttatccacctttggtctttgatattggtaacctttggattgggtttttgcgtgggcatcctttttgttgatattgatgctgttgctttctgtttgttagttttccttctaacagtcaggcccctcttctgcaggtctgctggagtttgctgaaggtccactccagaccctgtttgcctgggtattgctgcctgctccttcctctggaagctttgtcccagggg-gcacctgccagatgccagccggagctctccgctatgaggtgtctgttgactcctgctgggagg--------agtcaggaggcatgtgggtcagagacccacctgaggaggcagtctgtcccttagcagagcttgagcgctgtgctgggagaacagttgatctcttcagagcccgcaggcaggaacgtttgagtctgctgctgaagctgtgcccacagctgccccaccccacaggtgctctgtcccagggagatgggagttttatctgtaagcccctgaatggggctgctgcctttctttcagagatgacctcccgagacaggaggaatatagagcggcagtctggccacagtggctttgctgtgctgaggt-ggttccgcacccagttcgaaattcccggcaactttgtttacactgtgaggggaaaactgcctactcaagctttggcagtggtgggcgcccctccccgcaccaagctcgagtgtcccaggtcgacttcagactgctgtgctgccagcgagaatttcaagccagtgaattttagcttgttgggtgccttgggggtgggatctgctgaacaagaccactcggctccctggcttcagcccctttccagggtagtgaacagttttgtgccgctggcattccaggcaccactaggatatgaaaa
s gorGor5.CYUI01015385v1     4139323 2691 +  4267968 tctgtcacccaggctggagtgcagtggcatgatcttggctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagactctccagtagctgggattacaggtgtgcgccaccatgctcagctcatttttgtattttttagtagagacagggttttaccatgctcaccaggctggttttgaactcttgacctcatgatccacccaccttggcctcccaaaacgctgggattacaggtgtgagtcaccatgcccagccagtctcccattattattttgtgggagtctaagtctttttgtagggctctaagaacttgctttataaatctgggtgctcctgtattgggtgcatatatgcttaggataggtttctcttcttgttgcattgattcctttaccattatgtaatgtcc----ttgtcttttttgatctttgttggtttaaagtctgttttatcagaggccaggattgcaacacctgc----ttttttt-ttgctgctttccatttgcttggtaaatatacctccatcactttattttgggcctatgtgtgtcttcgcatgtgagacg---------------------------------------------------ggtctgatgaatacagtacaccgataggtcttaattctttatccaatttgccagtgtgcatcttttaattggggcattta-cccatttacatttaaggttaacattgttatatgtgaatttgatcctgtctttatgatgctagctggttattttgcccattagttgatgcagtttcttcatagtgtcgatggactttaaaatttggtatgtttttgcagtggctggtaccagttttttctttccatatttagtgcttccttcaggagctcttgtaaggcaggactggtggtgacaatatccttcaccatttgcttgtctgtaaaggattttatttctcctttacttatgaagcttagtttggctggatatgagattctgggttgaaagttcttttatttaagaatgttgaatattggcctccactctcttctggcttgtagggtatctgcagagagatccactattagtctgacgggcttcctggcttccctttgtgggtaacccgacctttctc-ttggctgcccttaata--tttttccttcatttcaaccttggtgaatccgacaactatgtgtcttggggttgctcttctggaggagtatctttgcagtgttctctgtatctcctaaatttgaatgttggcccatcttgctaggttggggaagttctcctggataatatcctgaagtgtgttttctaacttggttccattctccccatcactttcaggtacaccaatcaaacataggtttggtcttttcacatagtcccatatttcttggaggctttgttcattcctttttattc-tttttctctaatcttgtcttcacgctttatttcattaagttgatcttgaatctctgatatcctttcttctgcttgatccatttggtcattggtacttgtatgtgcttcacaaaattctcgtgctgtgtttttccgctacatcaggtcatttatgttcttttctaaattgattattctagttagcagttcctgtaacattttataaaggttcttggcttccttgaattgggttagaaaatgcacctttagctcagaggagtttgttattacctaccttctgaaacctacttctgtcaattcatcaaactcattctctgtccagatttgttcccttgctggtgaggagttgtaatcctttggaagagaagaggcattctggtttttggaattttcagcctttt-ttgtgctggtttttcctcatcttcttggatttatccacgtttggtctttgatattggtaacctttggattgggtttttgcgtgggcatcctttttgttgatattgatgctgttgctttctgtttgttagttttccttctaacagtcaggcccctcttctgcaggtctgctggagtttgctgaaggtccactccagaccctgtttgcctgggtattgctgcctgctccttcctctggaagctttgtcccagggg-gcacctgccagatgccagccggagctctccactatgaggtgtctgttgactcctgctgggaga--------agtcaggaggcatgtgggtcagagacccacctgaggaggcagtctgtcccttagcagagcttgagtgctgtgctgggagaacagtggatctcttcagagcccgcaggcaggaacctttgagtctgctgctgaagctgtgcctacagctgccccaccccacaggtgctctgtcccagggagatgggagttttatctgtaagcccctgaatggggctgctgcctttctttcagagatgacctcccaagacaggaggaatatagagcggcagtctggccacagtggctttgctgtgctgaggtgggttccgcacccagttcgaacttcccggcaactttgtttacactgtgaggggaaaactgcctactcaagcttcagcaatggtgggcgcccctccccgcaccaagctcgagcgtcccaggtcgatttcagactgctttgctgccagcgagaatttcaagccagtgaattttagcttgttgggtgccttgagggtgggatctgctgaacaaggccactcggctccctggcttcagcccctttccagggtagtgaacagttttgtgccactggcattccaggcaccactaggatatgaaaa
i gorGor5.CYUI01015385v1    C 0 C 0
s rheMac8.chr16             30183811 2680 - 77216781 tctgtcacccaggctggagtgcactggcacgatcctggcttactgcaacttccgcctcctgagttcatgccattctcctgcctcagcctctccagtagctgggattacaggtgcgcaccaccatgccaagctcgtttttgtatttttt-gtagagacagggcttcagcatgttgaccaggcaggtcttgaactcttgatctcatgatccacccaccttggcctctcaaagtgctgggattacaggtgtgagccaccttgcccagccagtctcccactattattgtgtgagagtctaagtctttttgtaggtctctaagaacttactttatgaacctgggtgctcctgtattgggtgcatatgtacttaggataggtagctcttcttgttgcattaatccctttaccattatgtaatgactttctttgtcttgtttgatctttgttggtttaaagtctgttatatcagagactaggattgcaatacctgcttttttttttttttgttgttttccatttgcttggtaaatcttcctccatcactttattttgagcctatgtgtgtctttgcacatgagatg---------------------------------------------------ggtctgctgaatatagtacactg---------tatcctttatccaatttgccagtctgtgtcttttaattggggcatttagcccatttacgtttaagattaacaatg-tatatgtgaatttgatcctgtctttatgatgctaataggttattttgcccattagttgatgcagtttctccatagtgttgatggcctttaaaatatggcatgtttttgcagtcactggtaccagtttttcctttccacatttagtgcttccttcgggaactcttgtaaggcaggactggtggtgacaaaatccttcatcatttgcttgtctgtaaaggattttatttctcctttatttatgaagcttagattggctggatatgagattctgggttgaaacttcttttatttaagaatgttgaatattgacccctactctcttctggcttgtg--gtatctgcagagagatccactgttaatctgatg--------ggcttccctttgtgggtaacccaacctttctctttggctgcccttaacatttttttccttcatttcaaccttagtgaatctgacaattatgtgtcttggggttgctcttctcgaggagtatctttatggtgttctctgtatttcctgaatttgaatgttggcctgttttactaggtttgggaagttct-ctggaaaatatcctgaagtgtgttttctaacttggttccattctccccatcactttcgggtacaccaatcaaacataggtttggtcttttcacatagtcctatatttcttggaggctttgttcattcctttttattcttttttctctaatcttgccttcacgctttatttcattaagttgatcttgaatctctgatatcctttcttctgcttgatccatttggccattgatacttgtgtatgcttcacaaaattctcgtgctatgtttttcagctccatcaggtcatttatgttctcttctaaactgattattctagttggcagttcctgtaaccttttataaaggttcttagcttccttgaattgggtttgaacatgtacctttagctcggaggagtttgttattacccaccttctgaaacctacctctgtcaattcatcaaactcattctctgtacagatttgttcccttgctggcgaggagttgtgatcctttggaggagaagaggcattctggtttttggaattttcagcctttt-ttgtgctgatttttcctcatcttcatggatttatccacctttggtctttgatattggtaaccttc-caatgggtttttgtgtgggcatcttttttgttgatgttgatgctgttgctttttgtttgctagttttccttctaacagtcaagctcctcctctgcacgtctgctggagtttgctggaactccactccagaccctgtgtgcctgggtattgctgcctgctctttcctctggaagcttcgtaccagaggagcacctgccagatgccagccagagctctcctggatgaggtgtctgttgactcctactgggaggtgtctctccgtcaggaggcatgtgggtcagagacccccctgaggaggcagtctgtcccttagcagagcctgagcactgtgctggaagagcagtggatctcttcagagctggcaggcaggaacgtttaagt---ctgctgaagctgcgcccacagctgccccttccgccaggtgctctgtcccagggagatgggagttttatctataagcccctgattgaggctgctgcctttctttcagagaatgcttgcccagagaggaggaatctagagaggcagtctggccacagtgtcttcgccgtgctgaggtgggttctgcacccagttcgaacttcccagcagctttgtttacactgagaggggaaaaccacccactcaagtttcagtaatggcagacatccctccccgcaccaggctctagtgtcccaggttggcttcagactgctgtgctggcagc--------caagccagtggatcttagcttggtgggtgccttggtggtgggatccactgagcaagaccatttggctccctggcttcagccccctttccggggagtgaatggttctgtctcactggcgttccagccaccactagggtatgaaaa
i rheMac8.chr16             I 33 I 47
s macFas5.chr16             28094123 2676 - 80997621 tctgtcacccaggctggagtgcactggcacgatcctggcttactgcaacttccgcctcctgagttcatgccattctcctgcctcagcctctccagtagctgggattacaggtgcgcaccaccatgccaagctcgtttttgtatttttt-gtagagacagggcttcagcatgttgaccaggctggtcttgaactcttgatctcatgatccacccaccttggcctctcaaagtgctgggattacaggtgtgagccaccttgcccagccagtctcccactattattgtgtgagagtctaagtctttttgtaggtctctaagaacttactttatgaacctgggtgctcctgtattgggtgcatatgtacttaggataggtagctcttcttgttgcattgatccctttaccattatgtaatgactttctttgtcttgtttgatctttgttggtttaaagtctgttatatcagagactaggattgcaatacctgc----ttttttttttgttgttttccatttgcttggtaaatcttcctccatcactttattttgagcctatgtgtgtctttgcacatgagatg---------------------------------------------------ggtctgctgaatatagtacactg---------tatcctttatccaatttgccagtctgtgtcttttaattggggcatttagcccatttacatttaagattaacaatg-tatatgtgaatttgatcctgtctttatgatgctaataggttattttgcccattagttgatgcagtttctccatagtgttgatggcctttaaaatatagcatgtttttgcagtcactggtaccagtttttcctttccacatttagtgcttccttcaggaactcttgtaaggcaggactggtggtgacaaaatccttcatcatttgcttgtctgtaaaggattttatttctcctttatttatgaagcttagattggctggatatgagattctgggttgaaacttcttttatttaagaatgttgaatattgacccctactctcttctggcttgtg--gtatctgcagagagatccactgttaatctgatg--------ggcttccctttgtgggtaacccaacctttctctttggctgcccttaacatttttttccttcatttcaaccttagtgaatctgacaattatgtgtcttggggttgctcttctcgaggagtatctttatggtgttctctgtatttcctgaatttgaatgttggcctgttttactaggtttgggaagttct-ctggaaaatatcctgaagtgtgttttctaacttggttccattctccccatcactttcgggtacaccaataaaacataggtttggtcttttcacatagtcctatatttcttggaggctttgttcattcctttttattcttttttctctaatcttgccttcacgctttatttcattaagttgatcttgaatctctgatatcctttcttctgcttgatccatttggccattgatacttgtgtatgcttcacaaaattctcgtgctatgtttttcagctccatcaggtcatttatgttctcttctaaactgattattctagttggcagttcctgtaaccttttataaaggttcttagcttccttgaattgggtttgaacatgtacctttagctcggaggagtttgttattacccaccttctgaaacctacttctgtcaattcatcaaactcattctctgtacagatttgttcccttgctggcgaggagttgtgatcctttggaggagaagaggcattctggtttttggaattttcagcctttt-ttgtgctgatttttcctcatcttcatggatttatccacctttggtctttgatattggtaaccttc-caatgggtttttgtgtgggcatcttttttgttgatgttgatgctgttgctttttgtttgctagttttccttctaacagtcaagctcctcctctgcacgtctgctggagtttgctggaactccactccagaccctgtgtgcctgggtattgctgcctgctctttcctctggaagcttcgtaccagaggagcacctgccagatgccagccagagctctcctggatgaggtgtctgttgactcctactgggaggtgtctctccgtcaggaggcatgtgggtcagagacccccctgaggaggcagtctgtcccttagcagagcctgagcactgtgctggaagagcagtggatctcttcagagctggcaggcaggaacgttgaagt---ctgctgaagctgcgcccacagctgccccttccgccaggtgctctgtcccagggagatgggagttttatctataagcccctgattgaggctgctgcctttctttcagagaatccttgcccagagaggaggaatctagagaggcagtctggccacagtgtcttcgccgtgctgaggtgggttctgcacccagttcgaacttcccagcagctttgtttacactgagaggggaaaaccacccactcaagtttcagtaatggcagacatccctccctgcaccaggctctagtgtcccaggttggcttcagactgctgtgctggcagc--------caagccagtggatcttagcttggtgggtgccttggtggtgggatccactgagcaagaccatttggctccctggcctcagccccctttccggggagtgaatggttctgtctcactggcgttccagccaccactagggtatgaaaa
i macFas5.chr16             C 0 I 8
s cerAty1.NW_012006043v1     2047379 2675 -  8458610 tctgtcacccaggctggagtgcactggcacgatcctggcttactgcaacttccgcctcctgagttcatgccattctcctgcctcagcctctccagtagctgggattacaggtgcgcaccaccatgccaagctcgtttttgtatttttt-gtagagacagggcttcagcatgttgaccaggctcgtcttgaactcttgatctcatgatccacccaccttggcctctcaaagtgctgggattacaggtgtgagccaccttgcccggccagtctcccactattattgtgtgagagtctaagtctttttgtaggtctctaagaacttactttatgaatctgggtgctcctgtattgggtgcatatgaacttaggataggtagctcttcttgttgcattgatccctttaccattatgtaatgactttctttgtcttgtttgatctttgttggtttaaagtctgttatatcagagactaggattgcaacacatgc----tttttttgttgttgttttccatttgcgtggtaaatcttcctccatcactttattttgagcctatgtgtgtctttgcacatgagatg---------------------------------------------------ggtctgctgaatatagtacactg---------tatcctttatccaatttgccagtctgtgtcttttaattggggcatttagcccatttacatttaagattaacaatg-tatatgtgaatttgatcctgtctttatgatgctaataggttattttgcccattagttgatgcagtttcttcatagtgttgatggcctttaaaatatggcatgtttttgcagtcactggtaccagtttttcctttccacatttagtgcttccttcaggaactcttgtaaggcaggactggtggtgacaaaatccttcatcatttgcttgtctgtaaaggattttgtttctcctttatttatgaagcttagattggctggatatgagattctgggttgaaacttcttttatttaagaatgttgaatattggcccctactctcttctggtttgta--gtatctgcagagagatccactgttagtctgatg--------ggcttccctttgtgggtaacccaacctttctctttggctgcccttaacatttttttccttcatttcaaccttagtgaatctgacaattatgtgtcttggggttgctcttctcgaggagtatctttatggtgttctctgtatttcctgaatttgaatgttggcctgttttgctaggtttgggaagttct-ctggataatatcctgaagtgtgttttctaacttggttccattctcctcatcactttcgggtacaccaatcaaacataggtttggtcttttcacatagtcctatatttcttggaggctttgttcattcctttttattcttttttctctaatcttgccttcacactttatttcattaagttgatcttgaatctctgatatcctttcttctgcttcatccatttggccattgatacttgtgtatgcttcacaaaattctcgtgctatgtttttcagcttcatcaggtcatttatgttctcttctaaactgattattctagttggcagttcctgtaaccttttataaaggttcttagcttccttgaattgggtttgaacatgtacctttagctcggaggagtttgttattacccaccttctgaaacctacttctgtcaattcatcaaactcattctctgtacagatttgttcccttgctggcgaggagttgtgatcctttggaggagaagaggcattctggtttttggaattttcagcctttt-ttgtgctggtttttcctcatcttcatggatttatccacctttggcctttgatattggtaaccttc-caatggggttttgtgtgggcatcctttttgttgatgttgatgctgttgctttttgtttgctagttttccttctaacagtcaagctcctcctctgcaggtctgctggagtttgctggaactccactccagaccctgtgtgcctgggtattgctgcctgctccttcctctggaagcttcgtcccaggggagcacctgccagatgccagccagagctctcctgtatgaggtgtctgttgactcctactgggaggtgtctctccgtcaggaggcatgtgggtcagagacccccctgaggaggcagtctgg-ccttagcagagcctgagcactgtgctggaagagcagtggatctcttcagagctggcaggcaggaatgtttaagt---ctgctgaagctgcgcccacagctgccccttcccccaggtgctctgtcccagggagatgggagtcttatctataagcccctgattgaggctgctgcctttctttcagagaatccttgcctagacaggaggaatctagagaggcagtctggccacagtgtcttcgccgtgctgaggtgggttctgcacccagttcgaactttccagcagctttgtttacactgagaggggaaaaccacccactcaagtttcagtaatggcagatatccctccctgcaccaggctctagtgtcccaggttggcttcagattgctgtgctggcagc--------caaaccagtggatcttagcttggtgggtgccttggtggtgggatccactgagcaagaccatttggctccctggcctcagccccctttccgcagagtgaatggttctgtctcactggcattccagccaccactagggtatgaaaa
i cerAty1.NW_012006043v1    I 200 I 21
s chlSab2.chr16             64979849 2667 + 75148670 tctgtcacccaggctagagtgcattggcatgatcctggcttatcgtgacttccacctcctgagttcacgccattctcctgcctcagcctctccagtagctgggattacaggtgcgtactaccatgccaagctcatttttgtatttttt-gtagagacagggcttcagcatgttgaccaggctggtcttgaactcttgatctcatgatccacccaccttggcctcccaaagtgctgggattacaggtgtgagccaccttgcccggccGgtctcccactattattgtgtgagagtctaagtctttttgtaggtctctaagaacttgctttatgaatctgggtgctcctgtattgggtgcatatatacttaggataggtagctcttcttgttgcattgatctctttacctttatgtaatgaccttctttgtcttgtttgatctttgttggtttaaagtctgttttaccagagactaggattgcaacacctgc----tttttttgttgttgctttccatctgcttggtaaatcttcctccatcactttattttgagcctct-tgtgtctttgcacatgagacg---------------------------------------------------ggtctgttgaatatagtacactg---------tatcctttatccgatttaccagtctgtgccttttaattggggcatttagcccatttacatttaagattaatgttg-tatatgtgaatttgatcctgtctttatgatgctagttggttattttgcccattaattgatgcagtttcttcatagtgttgatagcctttaaaatttggcatgtttttgcagtcactggtaccagtttttcctttccacatttagtgcttccttcaggaactcttgtaaggcaggactggtggtgacaaaatccttcatcatttgcttgtctgtaaaggattttatttctcctttatttatgaagcttagtttggctggatatgagattctgggttgaaagttcttttatttaagaatattgaatattggcccccactctcttctggcttgca--gtatctgcagagagatccactgttagtctgttg--------ggcttccctttgggggtaacccaacctttctctttggctgcccttaacatttttttccttcatttcaaccttagtgaatctgacaattatgtgtcttggggttgctcttctcaaggagtatctttatggtgttctctgtatttcctgaatttgaatgttggcctgttttgctaggtttgggaagttct-ctggataatatcctgaagtgtgttttctaacttggttccattctccccatcactttcaggtacaccaatcaaacataggtttggtcttttcacatagtcctgtatttcttggaggctttgtttattcctttttattcttttttctctaatcttgccttcatgctttatttcattaagttgatcttgaatctctgatatcctttcttctgcttgatccatttggtcattgatacttgtgtatgcttcacaaaattctcatgctatgttattcagctccatca-gtcatttatgttcttttctaaactgattagtctagttagcagttcctgtaaccttttataaaggttcttagcttccttgaattgggttagaacatgtacctttagctcggagaagtttgttattatccaccttctgaaacctacttctgtcaattcatcaaactcattctctgtacagatttgttcccttgctggtgaggagttgtgatcctttggaggagaagaggcattctggtttttggaattttcagcctttg-ttgtgctggtttttcctcatcttcatggatttatcccccgttggcctttgatattggtaaccttc-cagtggggttttgtgtgggtatcctttttgttgatgttgatgctgttgctttttgtttgctagttttccttctaacagtcaagctcctcctctgcaggtctgctggagtttgctggaactccactccagaccctgtttgcctgggtattgctgcctgctccttcctctggaagattcgtaccagaggagcacctgccagatggcagccagagctctcct-------gtgtctgttgactcctactgggaggtgtctctccgtccggtggcatgtgggtcagagacccccctgaggaggcagtctgtcccttagcagagcctgagcactgtgctggaagagcagtggatctcttcggagctggcaggcaggaacgtttaagt---ctgctgaagctgcgcccacagctgccccttcccccaggtgctctgtcccagggagatgggagccttacctataagcccctgaatggggctgctgcctttctttcagagaatccctgcccagagaggaggactctagagaggcagtctggccacagtgtctttgccatgctgaggtgggttctgcacccagttcgaacttcccaggagctttgtttacactgagaggggaaaacggcccactcaagtttcagtaatggcagacgtccctccccccaccaggctcgagtgtcccaggttggcttcagactgctgcgctggcagc--------caaaccagtggatcttagcttggtgggtgccttggtggtgggatccgctgagcaagaccatttggctccctgggctcagccccctttccagggagtgaatggttctgtctcactggcgttccagccaccactagggtatgaaaa
i chlSab2.chr16             I 27 I 22
s manLeu1.NW_012106252v1     2242056 2665 +  4244037 tctgtcacccaggctggagtgcattggcacgatcctggcttactgtgacttccacctcctgagttcacgccattctcctgcctcagcctctccagtagctgggattacaggtgcgtaccaccatgccaagctcatttttgtatttttt-gtagagacagggcttcagcatgttgaccaggctggtcttgaactcttgatctcatgatccacccaccttggcctcccaaagtgctgggattacaggtgtgagccaccttgcccggccGgtctcccactattattgtgtgagagtctaagtctttttgtaggtctctaagaacttgctttgtgaatctgggtgctcctgtattgggtgcatgtgtacttaggataggtagctcttcttgttgcattgatctctttaacattatgtgatgaccttctttgtcttgtttgatctttgttggtttaaagtctgttttaccagagactaggattgcaacacctgc----tttttttgttgttgctttccatttgcttggtaaatcttcctccatcactttattttgagcctat-tgtgtctttgcacatgagacg---------------------------------------------------ggtctgctgaatgtagtacactg---------tatcctttatccaatttggcagtctgtgtcttttaattggggcatttagcccatttacatttaagattaatgttg-tatatgtgaatttgatcctgtctttatgatgctagttggttattttgcccattagttgatgcagtttcttcatagtgttgatagcctttaaaatttggcatgtttttgcagtcactggtaccagtttttcctttccacatttagtgcttccttcaggaactcttgtaagtcaggactggtggtgacaaaatccttcatcatttgcttgtctgtaaaggattttatttctcctttatttatgaagcttagtttggctagatatgagattctaggttgaaagttcttttatttaagaatattgaatattggctcccactctcttctggcttgca--gtatctgcagagagatccactgttagtctgatg--------ggcttccctttgtgggtaacccaacctttctctttggctacccttaacatttttttccttcatttcaaccttagtgaatctgacagttatgtgtcttggggttgctcttctcgaggagtatctttatggtgttttctgtatttcctgaatttgaatgttggcctgttttgctaggtttgggaagttct-ctgcataatatcctgaagtgtgttttctaacttggttccattctccccatcactttcaggtacaccaatcaaacataggtttggtcttttcacatagtcctatatttcttggaggctttgtttattcctttttattcttttttctctaatcttgccttcacactttatttcattaagttgatcttgaatctctgatatcctttcttctgcttgatccatttggtcattgatacttgcgtatgcttcacaaaattctcgtgctctgtttttcagctccatcaggtcatttatgttcttttctaaacagattattctagttagcagtt-------ccttttataaaggttcttagcttcctcgaattgggttagaacatgtacctttagctcggagaagtttgttattatccaccttctgaaacctacttctgtcaattcatcaaactcattctctgtacagatttgttcccttgctggtgaggagttgtgatcctttggaggagaagaggcattctggtttttggaattttcagcctttg-ttgtgctggtttttcctcatcttcatggatttatccacctttggcctttgatattggtaacctt----ggaaggttttgtgtgggcatcctttttgttgatgttgatgctgttgctttttgtttgctagttttccttctaacagtcaagctcctcctctgcaggtctgctggagtttgctggaactccactccagaccctatgtgcctgggtattgctgcctgctccttcctctggaagcttcgtcccaggggagcacctgccagatgccagccagagctctcctgtatgaggtgtctgttgactcctactgggaggtgtctctccgtcaggaggcatgtgggtcagagacccccctgaggaggcagtccgtcccttagcagagcctgagcactgtgctggaagagcagtggatctcttcggagctggcaggcaggaacgtttaagt---ctgctgaagctgcgcccacagctgccccttccgccaggtgctctgtccccgggagatgggagttttatctataagcccctgattgaggctgctgcctttctttcagagaatccttgcccagagaggaggaatctagagaggcagtctgaccacagtgtcttcgccgtgctgaggtgggttctgcacccagttcgaacttcccagcagctttgtttacactgagaggggaaaaccacccacttaagtttcagtaatggcagacatccctccctgcaccaggctctagtgtcccaggttggcttcagactgctgtgctggcagc--------caagccagtggatcatagcttggtgggtgccttggtggtgggatccactgagcaagaccatttggctccctggcctcagccccctttctggggagtgaatggttctgtctcactggcgttccagccaccactagggtatgaaaa
i manLeu1.NW_012106252v1    I 334 I 22
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e dasNov3.JH570468            636635 11792 -   852752 T
e otoGar3.GL873537          22864121 50595 + 28711273 I
e saiBol1.JH378271           1888661 14031 +  3513951 T
e macNem1.NW_012014910v1     2140493 7289 + 10377808 I

a score=12958.000000
s hg38.chr17_JH159148v1_alt    79464 27 +    88070 caacaacaacaacaa----caaagcaaaaca
s gorGor5.CYUI01015385v1     4142014 27 +  4267968 caacaacaacaacaa----caaagcaaaaca
i gorGor5.CYUI01015385v1    C 0 C 0
s macFas5.chr16             28096807 27 - 80997621 GAAAAACAAAAACCA----AAAACCAAAAAA
i macFas5.chr16             I 8 I 12
s cerAty1.NW_012006043v1     2050075 27 -  8458610 caaaaaccaaaaaac----caaaccaaaaca
i cerAty1.NW_012006043v1    I 21 I 4
s chlSab2.chr16             64982538 26 + 75148670 aaaaaacaaaaaaac----cgaaacaaaaC-
i chlSab2.chr16             I 22 C 0
s manLeu1.NW_012106252v1     2244743 30 +  4244037 aaaaaccaaaaaaccgaaacaaaacaaaac-
i manLeu1.NW_012106252v1    I 22 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e dasNov3.JH570468            636635 11792 -   852752 T
e otoGar3.GL873537          22864121 50595 + 28711273 I
e saiBol1.JH378271           1888661 14031 +  3513951 T
e macNem1.NW_012014910v1     2140493 7289 + 10377808 I
e rheMac8.chr16             30186491 47 - 77216781 I

a score=2122604.000000
s hg38.chr17_JH159148v1_alt    79491 1215 +    88070 aaaacacaaaactcctacagctagcttggtgtttgcccaaacagccacccagttttgtgcttgaagcccagggccgtggtg--gtaggcacccgagggaatctcctggtctgtgagttgtgaagaccatagaaaa-gcatagtagctggaccagatagcaccatccccagaaataccatttgattcagcaatccctttactggatatatacccaaaggaatagaaatcattctatcataaagatacatgcatgcatatgttcactgcagcactactcacaatagcaaagacatggaaccaacccaaatgcccatcaagagtagactggataaagaaaatatgatacatgtacacaatggaatactatgcagccataaaaaggaactggatcatgtcctttgtagggacatggatggagctagaagctgttattctcagcaaactaacacaggaacagaaaaccaaaatgacatgttttcatttataagtgggagctgaatgatgggaacacatggacaaacgttggggtgggagaacaacacatactggggcctgttgcaggcaatgagagggagggcatcaggaagaacagttaatgggttctgggcttaatacttgggtgatgggttgatctgtgtagcaaaccaccatggca--catttacctatgtaacaaacctgcacatcctgcacacgtatcccagaacttaaaataaaagttgataaaataaaaaATAAATAATTTA-Aaaaattttttaaaatttctggagacagatgatggttgtctaacaacatgagtgtacttacttccactgaactgtatatgtaaaaatgattataattgtggttgggcacggtggctcacacctgtaatcccaacactttgagaggctgaggcaggtggatcacgaggtaaggtatttgagaccaatctggccaacatagtgaaaccccatctctactaaaactacaaaaaattaaccaggcatggtggcacatgcctgtagtcccagctactcgggaggctgaggcaggaggatcgctcgaacctggaaggcggaggttgcagtgagctgagaacgtgccactgcactccagcctgggtgacagagcaaaattccatctcaaaaataa--------ataaataaataaagattataattgtaaattttatgtgtattttaccacaataaaaaaaCAGTAAGCCAGGAATAAAAAGTTTTGATG
s gorGor5.CYUI01015385v1     4142041 1225 +  4267968 aaaacacaaaactcctacagctagcttggtgtttgcccaaacagccacccagttttgtgcttgaagcccagggccgtggtggtgtaggaacctgagggaatctcctggtctgtgagttgtgaagactatagaaaa-gcatagtatctggaccagatagcaccatccccagaaataccatttgattcagaaatccctttactgggtatatacccaaagaaatagaaatcattctattataaagatacatgcatgcatatgttcactgcagcactactcacaatagcaaagacatggaaccaacccaaatgcccatcaagagtagactggataaagaaaatatgatacatgtacacaatggaatactatgcagccataaaaaggaactggatcatgtcctttgtagggacatggatggagctagaagctgttattctcagcaaactaacacaggaacagaaaaccaaaatgacatgttttcatttataagtgggagctgaataatgggaacacatggacaaatgttggggtgggagaacaacacacactggggcctgttgcaggcaatgagagggagggcatcaggaagaacagctaatggattctgggctcaatacttgggtgatgggttgatctgtgcagcaaaccaccatggca--catttacctatgtaacaaacctgcacatcctgcacatgtatcccagaacttaaaataaaagttgataaaataaaaaATAAATAATTTA-AAAATTTTTTTaaaatttctggagacagatgatggttgtctaacaacatgaatgtacttacttccactgaactgtatatgtaaaaatgattataattgtggttgggcacggtggctcacacctgtaatcccaacactttgagaggctgaggcaggtggatcatgacgtaaggtatttgagaccagtctggccaacatagtgaaaccccgtctctactaaaactacaaaaaattaaccaggcatggtggcacttgcctgtagtcccagctactcaggaggctgaggcaggagaatcgctcaaacctggaaggcagaggttgcagtgagctgagaacgtgccagtgcactccagcctgggtgacagagcaaaattccgtctcaaaaataagtaaatacataaataaataaaGATTATAATTGTAAATTTTATGTGTATTTTACCACAATAAAAAAACAGTAAGCCAGGAATAAAAAGTTTTGATG
i gorGor5.CYUI01015385v1    C 0 C 0
s rheMac8.chr16             30186538 1204 - 77216781 aaaacaaaaacctcctgcagctagctcagtgtttgcccaaacagctgcccagttttgtgcttgaagcccagggccctggtggtgtaggcacctgagggaatctcctcgtctatgagttgtgaagaccataggaaa-----agtatctgggcccgatagcaccatccccagaaataccatttgatccagcaatcccattactgagtatatacccaaaggaatagaaatcattctattacaaagatacatgcatgtgtatgttcactgcagcactattcacaatagcaaagacatggaaccaacccaaatgcccatcaagagtagactggataaagaaaatgtgatacatatacaccatggaatactttgcagccataaaaaggaactagatcatgtcctttgtaggaacatggatggagctagaagccgttattctcagcaaactaacacaggaacagaaaaccaaaacgacatgttctcatttataagtgggagctgaatgacgggaacacatgcacacatggtggagcaggagaacaacacatactggggcctgtcacaggcaatgggagggagagcatcaggaagaacagttaatgggtcctgggcttaaaacctgggtgataggttgatctgtgcagcaaaccaccatggcactcatttacctatgtaacaaacctgcacatcctgcacatgtatcccagaacttaaaataaaagttgataaaataaaaaATAAATAATttt-aaaaattta-aaaaatgtctggagatggatgatagttgcctaacaacatgaatgtatttactgccactaaactgtgtatgtaaaaatgattgtaactgtggctgggcacggtggctcatacctgtaatcctagtactttgggatgccaaggcaggtggattatgaggtcaggcgtttgagaccagcctggccaacatagtgaaatcccatctccactaaatatacaaaaaattagctggtcatggtggtatacgcct---gtcccagctactcgggaggctgaggtaggagaattgcttgaatctggaaggcggaggttgcagtgagccgagaacgtgccactatactccagccttggctggagagcaagactccatct------aaa--------aaaaaaaaaaaaagattataattgtaaattttatgtgtattttactgcagt-aaaaaaCAGTAAGCCACGAATAAAAAGTTTTGACG
i rheMac8.chr16             I 47 C 0
s macFas5.chr16             28096846 1202 - 80997621 aaaacaaaaacctcctgcagctagctcagtgtttgcccaaacagctgcccagttttgtgcttgaagcccagggccctggtggtgtaggcacctgagggaatctcctggtctatgagttgtgaagaccataggaaa-----agtatctgggcccgatagcaccatccccagaaataccatttgatccagcaatcccattactgagtatatacccaaaggaatagaaatcattctattacaaagatacatgcatgtgtatgttcactgcagcactattcacaatagcaaagacatggaaccaacccaaatgcccatcaagagtagactggataaagaaaatgtgatacatatacaccatggaatactttgcagccataaaaaggaactagatcatgtcctttgtaggaacatggatggagctagaagccgttattctcagcaaactaacacaggaacagaaaaccaaaacgacatgttctcatttataagtgggagctgaatgacaggaacacatgcacacatggtggagcaggagaacaacacgtactggggcctgtcacaggcaatgggagggagagcatcaggaagaacagttaatgggtcctgggcttaaaacctgggtgataggttgatctgtgcagcaaaccaccatggcactcatttacctatgtaacaaacctgcacatcctgcacatgtatcccagaacttaaaataaaagttgataaaataaaaaATAAATAATttt-aaaaattta-aaaaatgtctggagatggatgatagttgcctaacaacatgaatgtatttactgccactaaactgtgtatgtaaaaatgattgtaactgtggctgggcacggtggctcatacctgtaatcctagtactttgggatgccaaggcaggtggattatgaggtcaggcgtttgagaccagcctggccaacatagtgaaatcccatctccactaaatatacaaaaaattagctgggcatggtggtatacgcct---gtcccagctactcgggaggctgaggtaggagaattgcttgaatctggaaggcggaggttgcagtgagccgagaacgtgccactacactccagccttggcgacagagcaagactccatct--------a--------aaaaaaaaaaaaagattataattgtacattttatgtgtattttactgcagt-aaaaaaCAGTAAGCCACGAATAAAAAGTTTTGACG
i macFas5.chr16             I 12 C 0
s cerAty1.NW_012006043v1     2050106 1207 -  8458610 aaaacaaaaacctcctgcagctagctcagtgtttgcccaaacagctgcccagttttgtgcttgaagcccagggccctggtggtgtaggcacctgagggaacctcctggtctatgagttgtgaagaccataggaaa-----agcatctgggcctgatagcaccatccccagaaataccatttgatccagcaatcccattactgagtatatacccaaaggaatagaaatcattctattacaaagatacatgcatgtatatgttcactgcagcactattcacaatagcaaagacatggaaccaacccaaatgcccaccaagagtagactggataaagaaaatgtgagacatatacaccatggaatactttgcagccataaaaaggaactagatcatgtcctttgtaggaacatggatggagctagaagccgttattctcagcaaactaacacaggaacagaaaaccaaaacgacatgttctcatttataagtgggagctgaatgacgggaacacatgcacacatggtggagcaggagaacaacacatactggggcctgtcacaggcaatgggagggagagcatcaggaagaacagttaatgggtcctgggcttaaaacctgggtgataggttgatctgtgcagcaaaccaccatggcactcatttacctatgtaacaaacctgcacatcctgcacatgtatcccagaatttaaaataaaagttgataaaataaaaaATAAATAATTGTAAAAAATTta-aaaaatgtctggagatggatgatagttgcctaacaacatgaatgtatttactgccactaagctgtgtatgtaaaaatgattgtaactgtggctgggcacggtggctcatacctgtaatcctagtactttgggatgccaaggcaggtggattatgaggtcaggcgtttgagaccagcctggccaacatagtgaaatcccatctccactaaatatacaaaaaattagctgggcatggtggtatacgcct---gtcccagctactcgggaggctgaggcaggagaattgcttgaacctggaaggcggaggttgcagtgaaccgagaacgtgccactacactccagccttggtgacacagcaagactccatct----caaaa--------aaaaaaaaaaaaagattataattgtaaattttatgtgtattttactgcagt-aaaaaaTAGTAAGCCACAAATAAAAAGTTTTGACA
i cerAty1.NW_012006043v1    I 4 C 0
s chlSab2.chr16             64982564 1206 + 75148670 aaaacaaaaacctccttcagctagctcagtgtttgcccaaacagttgcccagttttgtgcttgaagcccagggccccggtggtgtaggcacctgagggaatctcctggtctatgagttgtgaagaccataggaaaagtgtagtatctgggcccaatagcaccatccccagaaataccatttgatccagcaatcccattactgagtatatacccaaaggaatagaaatcattctgttacaaagatacatgcacgtgtatgttcactgcaacactattcacaatagcaaagacatggaaccaacccaaatgcccatcaagagtagactggataaagaaaatgtgatacatatacaccatggaatactatgcagccacaaaaaggaactagatcatgtcctttgtaggaacatggatggagctagaagccgttattctcagcaaactaacacaggaacagaaaatcaaaacgacatgttctcatttataagtgggagctgaatgatgggaacacatgcacacgtggtggggcaggagaacaacacatactggggcctgtcgcaggcaatgggaaggacagcatcagaaagaacagctaatgggtcctgggcttaaaacctgggtgattggttgatctgtgcagcaaaccaccatggcactcatttacctatgtaaaaaacctgcacatcctgcacatgtatcccagaacttaaaataaaagttgataaaagaaaaaATAAATAATTAA-AAAAATTTT-aaaaatgtctggagatggatgatagttgcctaacaacatgaatgtatttactgccactaaactgtgtatgtaaaaatgattgtaactgtggctgggtgcggtggctcatacctgtaatcctagtactttgggatgccaaggcaggtggattatgaggtcaggcgtttgagaccagcctggccaacatagtgaaatcccatctccactaaatatacaaaaaattagctgagcatggtggtatacgcct---gtcccagctactcgggaggctgaggtaggagaattgcttgaacctggaaggcggaggttgcagtgagccgagaacgtgccactacactccagccttggcgacagagcaagactccatct-----------------aaaaaaaaaaaaaaattataattgtaaattttatgtgtattttactgcagt-aaaaaaCAGTAAGCCACGAATAAAAAGTTTTGACG
i chlSab2.chr16             C 0 C 0
s manLeu1.NW_012106252v1     2244773 1211 +  4244037 aaaacaaaaacctcctgcagctagctcagtgtttgcccaaacagctgcccagttttgtgcttgaagcccagggccctggtggtgtaggcacctgagggaatctcctggtctatgagttgtgaagaccataggaaa-----agtatctgggcccgatagcaccatccccagaaataccatttgatccagcaagcccattactgagtatatacccaaaggaatagaaatcattctattacaaagatacatgcatgtgtatgttcactgcaacactattcacaatagcaaagacatggaaccaacccaaatgcccatcaggagtagactggataaagaaaatgtgatacatatacaccatggaatactttgcagccataaaaaggaactagatcatgtcctttgtaggaacatggatggagctagaagccgttattctcagcaaactaacacaggaacaggaaaccaaaacgacatgttctcatttataagtgggagctgaatgacgggaacacatgcacacatggtggagcaggagaacaacacatactggggcctgtcacaggcaatgggagggagagcatcaggaagaacagttaatgggtcctgggcttcaaacctgggtgataggttgatctgtgcagcaaaccaccatggcactcatttacctatgtaacaaacctgcacatcctgcacatgtatcccagaacttaaaataaaagttgataaaataaaaaATAAATAATTGT-AAAAATTTtaaaaaatgtctggagatggaagatagttgcctaacaacatgaatgtatttactgccactaaactgtgtatgtaaaaatgattgtaactgtggctgggcacggtggctcatacctgtaatcctagtactttgggatgccaaggcaggtggattatgaggtcaggcgtttgagaccagcctggccaacatagtgaaatcccatctccactaaatatacaaaaaattagctgggcatggtggtacacgcct---gtcccagctactcgggaggctgaggcaggagaattgcttgaacctggaaggcggaggttgcagtgaaccgagaacgtgccactacactccagccttggtgacacagcaagactccatctcaaaaaaaa--------aaaaaaaaaaaaagattataattgtaaattttatgtgtattttactgcagt-aaaaaaTAGTAAGCCACAAATAAAAAGTTTTGACA
i manLeu1.NW_012106252v1    C 0 C 0
e aotNan1.NW_018505111v1       17901 4966 -    94492 I
e cebCap1.NW_016107543v1       24051 5287 -  4077172 I
e dasNov3.JH570468            636635 11792 -   852752 T
e otoGar3.GL873537          22864121 50595 + 28711273 I
e saiBol1.JH378271           1888661 14031 +  3513951 T
e macNem1.NW_012014910v1     2140493 7289 + 10377808 I

a score=7231.000000
s hg38.chr17_JH159148v1_alt           80706 3 +    88070 TGA
s gorGor5.CYUI01015385v1            4143266 3 +  4267968 TGG
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30187742 3 - 77216781 TGG
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28098048 3 - 80997621 TGG
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2051313 3 -  8458610 TGG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64983770 3 + 75148670 TGG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2245984 3 +  4244037 TGG
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     2470 3 +    37134 TGG
i calJac3.chr5_ACFV01176693_random N 0 C 0
e aotNan1.NW_018505111v1              17901 4966 -    94492 I
e cebCap1.NW_016107543v1              24051 5287 -  4077172 I
e dasNov3.JH570468                   636635 11792 -   852752 T
e otoGar3.GL873537                 22864121 50595 + 28711273 I
e saiBol1.JH378271                  1888661 14031 +  3513951 T
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=669610.000000
s hg38.chr17_JH159148v1_alt           80709 172 +    88070 AAACAAATTATCTCTCAAAGTTTGGGTGCAAATGAAATGTGGCCTAAGTTTTTTGGGCCATGACTTAATCTTCTATTACCATTTATTTAGGTGACCAGAAGAATGAGGACAAACAGAATGCCAATTCCATTATTTCAACAAACAAGTATTTCTAGATGAGCCTCTCACACCA
s gorGor5.CYUI01015385v1            4143269 172 +  4267968 AAACAAATTATCTCTCAAAGTTTGGGTGCAAATGAAATGTGGCCTAAGTTTTATGGGGCATGACTTAATCTTCTATTACCATTTATTTAGGTGACCAGAAGAATGAGGACAAACAGAATGCCAATTCCATTATTTCAACAAACAAGTATTTCTAGATGAGCCTCTCACACCA
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30187745 172 - 77216781 GAACAAATTATCTCTCAAAGTTTGGGTGCAAATGAAGTGTGGCCTAAGTTTTATGGGGAGTGACTTAATCTCCTATTACCATTTATTTAGGTGACCAGAAGAAGGAGGACATACAGAACGCCAATTCCATGACTTCAACAAACAAGTATTTCTAGATGAGCCTCTCACACCA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28098051 172 - 80997621 GAACAAATTATCTCTCAAAGTTTGGGTGCAAATGAAGTGTGGCCTAAGTTTTATGGGGAGTGACTTAATCTCCTATTACCATTTATTTAGGTGACCAGAAGAAGGAGGACATACAGAACGCCAATTCCATGACTTCAACAAACAAGTATTTCTAGATGAGCCTCTCACACCA
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2051316 172 -  8458610 GAACAAATTATCTCTCAAAGTTTGGGTGCAAATGAAGTGTGGCCTAAGTTTTATGGGGAGTGACTTAATCTCCTATTACCATTTATTTAGGTGACCAGAAGAAGGAGGACATACAGAACGCCAATTCCCTGACTTCAACAAACAAGTATTTCTAGATGAGCCTCTCACACCA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64983773 172 + 75148670 GAACAAATTATCTCTCAAAGTTTGGGTGCAAATGAAGTGTGGCCTAAGTTTTATGGGGAGTGACTTAATCTCCTATTACCATTTATTTAGGTGACCAGAAGAATGAGGACATACAGAACGCCAATTCCATGACTTCAACAAACAAGTATTTCTAGATGAGCCTCTCACACCA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2245987 172 +  4244037 GAACAAATTATCTCTCAAAGTTTGGGTGCAAATGAAGTGTGGCCTAAGTTTTATGGGGAGTGACTTAATCTCCTATTACCATTTATTTAGGTGACCAGAAGAAGGAGGACATACAGAACGCCAATTCCCTGACTTCAACAAACACGTATTTCTAGATGAGCCTCTCACACCA
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     2473 172 +    37134 AAACAAATTATCTCTCAATGTTTGGGTGCAAATGAAGTGTGGCCTAAGTTTTATGGGGCATGACTTAATCTCCTATTACCATTTATTTAGGTGACCAGAAGAATGAGGACATACAGAATGCCAATTCCATGACTTCAACAAACAGATATTTCTAGATGAGCCTCTCAAACCA
i calJac3.chr5_ACFV01176693_random C 0 C 0
s cebCap1.NW_016107543v1              29338 172 -  4077172 AAACAAATTATCTCTCAATGTTTGGGTGCAAATGAAGTGTGGCCTAAATTTTATGGGGCATGACTTAATCTCCTGTTACCATTTATGTGGGTGACCAGAAGAATGAGGACATACAGAATGCCAATTCCATGACTTCAACAAACATATATTTCCAGATGAGCCTCTCACACCA
i cebCap1.NW_016107543v1           I 5287 C 0
s aotNan1.NW_018505111v1              22867 172 -    94492 AAACAAATTATCTCTCAACGTTTGGGTGCAAATGAAGTGTGGCCTAAGTTTTATGGGGCATGACTTAATCTCCTGTTACCATTTATTTAGGTGACCAGAAGAATGAGGACATACAGAATGCCAATTCCATGACTTCAACAAACAGATATTTCTAGATGAGCCTCTCACACCA
i aotNan1.NW_018505111v1           I 4966 C 0
e dasNov3.JH570468                   636635 11792 -   852752 T
e otoGar3.GL873537                 22864121 50595 + 28711273 I
e saiBol1.JH378271                  1888661 14031 +  3513951 T
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=471780.000000
s hg38.chr17_JH159148v1_alt           80881 157 +    88070 AAGTcccaggacagaggcaggaacacaatgggtgctcaaaaatatttAAAGAACTTCACCAGTGCCTGACAAGAGACTGAGAATATAAAATGTTCACATGATTCACGAGGGCTCTTAAAACGAGTTGTTGCTCTTAAGATGTGGCTATTGGTTAGGG
s gorGor5.CYUI01015385v1            4143441 157 +  4267968 AAGTcccaggacagaggcaggaacacaatgggtgctcaaaaatatttAAAGAACTTCACCAGTGTCTGACAACAGACTGAGAACATAAAATGTTCACATGATTCACGAGGGCTCTTAAAACAAGTTGTTGCTCTTAAGATGTGGCTATTGGTTAGAG
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30187917 157 - 77216781 AAGTcccaggacagaggcaggaacacaatgggtgctcaaaaatatttAAAGACGTTCACCAGCGGCTGACAAGAGACTGAGAAAATAAAATGTTCACGTGATTCAGGAGGGCTCTTAAAACAAATTGTTGCTCTTAAGATGTGGCTATTGGTTAGGG
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28098223 157 - 80997621 AAGTcccaggacagaggcaggaacacaatgggtgctcaaaaatatttAAAGACGTTCACCAGCGGCTGACAAGAGACTGAGAAAATAAAATGTTCACGTGATTCAGGAGGGCTCTTAAAACAAATTGTTGCTCTTAAGATGTGGCTATTGGTTAGGG
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2051488 157 -  8458610 AAGTcccaggacagaggcaggaacacaatgggtgctcaaaaatatttAAAGACGTTCACCAGCGGCTGACAAGAGACTGAGAAAATAAAATGTTCACGTGATTCAGGAGGGCTCTTAAAACAAATTGTTGCTCTTAAGATGTGGCTATTGGTTAGGG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64983945 157 + 75148670 AAGTcccaggacagaggcaggaacacaataggtgctcaaaaatatttAAAGATGTTCACCAGCAGCTGACAAGAGACTGAGAAAGTAAAATGTTCACGTGGTTCAGGAGGGCTCTTAAAACAAATTGTTGCTCTTAAGATGTGGCTATTGGTTAGAG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2246159 157 +  4244037 AAGTCCCAGGACAGAGGCAGGAGCACAATGGGTGCTCAAAAATATTTAAAGACGTTCACCAGCGGCTGACAAGAGACTGAGAAAATAAAATGTTCACGTGATTCACGAGGGCTCTTAAAACAAATTGTTGCTCTTAAGATGTGGCTGTTGGTTAGGG
i manLeu1.NW_012106252v1           C 0 C 0
s cebCap1.NW_016107543v1              29510 157 -  4077172 AAGTCCTAGGAGAGAGGCAGGAACAGAATGGGTGCTCAAAAATATTTAAAGAAGTTCACCAGCAGCTGAGCAGAGACTGAGAAAATAAAATGTTCACATGATTCACAAGGGCTCTGAAAACAAGTTGTTGATCTTAAGATGTGACTATTTGTTAGGG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              23039 157 -    94492 AAGTCCTAGGACAGAGGCAGGAACAGAATGGGTGCTCAAAAATATTTAAAGAAGTTCACCAGCGGCTGAGCAGAGACTGAGAAAATAAAATGTTTACATGATCCACAAGGGCTCTGAAAACAAGTTGTTAATCTTAAGATGTGACTATTGGTTAGGG
i aotNan1.NW_018505111v1           C 0 C 0
e dasNov3.JH570468                   636635 11792 -   852752 T
e otoGar3.GL873537                 22864121 50595 + 28711273 I
e saiBol1.JH378271                  1888661 14031 +  3513951 T
e calJac3.chr5_ACFV01176693_random     2645   0 +    37134 C
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=414735.000000
s hg38.chr17_JH159148v1_alt           81038 122 +    88070 GAATGAATTTGGAAAGAACTTTGTTAGTAGAAAATGGTCTGCAAATGCGTGGAATTGGTGTTTCCATTGTCAGAGAACAACTTCGAGTGCACCCCTTCCCGGTTCTAAGTCCTTAGTATAAT----------------
s gorGor5.CYUI01015385v1            4143598 122 +  4267968 GAATGAATTTGGGAAGAACTTTGTTAGTAGAAAATGATCTGCAAATGCGTGGAATTGGTGTTTCCATTGTCGGAGAACAACTTCGAGTGCACCCCTTCCCGGTTCTAAGTACTTAGTATAAT----------------
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30188074 122 - 77216781 GAATGAATTTGGGATGAACTTTGTTACTAGAAAATGATCTGCCAGTGCATGGAATTGGTGTTTCCATTGTCGGAGAACAACTTCAAGTGCACCTCTTCCCCGTGCTAAGTTCTTAGTATAAt----------------
i rheMac8.chr16                    C 0 I 335
s macFas5.chr16                    28098380 122 - 80997621 GAATGAATTTGGGATGAACTTTGTTACTAGAAAATGATCTGCCAGTGCATGGAATTGGTGTTTCCATTGTCGGAGAACAACTTCAAGTGCACCTCTTCCCCGTGCTAAGTCCTTAGTATAAt----------------
i macFas5.chr16                    C 0 I 316
s cerAty1.NW_012006043v1            2051645 122 -  8458610 GAATGAATTTGGGATGAACTTTGTTACTAGAAAATGATCTGCCAGTGCATGGAATTGGTGTTTCCATTGTCGGAGAACAACTTCAAGTGCACCTCTTCCCGGTGCTAAGTCCTTAGTATAAt----------------
i cerAty1.NW_012006043v1           C 0 I 314
s chlSab2.chr16                    64984102 122 + 75148670 GAATGAATTTGGGATGAACTTTGTTACTAGAAAATGATCTGCCAGTGCATGGAATTGGTGTTTCCATTGTCGGAGAATAACTTCAAGTGCACCTCTTCCCGGTGCTAAGTCCTTAGTATAAt----------------
i chlSab2.chr16                    C 0 I 325
s manLeu1.NW_012106252v1            2246316 122 +  4244037 GAATGAATTTGGGATGAACTTTGTTACTAGAAAATGATCTGCCAGTGTATGGAATTGGTGTTTCCATTGTCGGAGAATAACTTCAAGTGCACCTCTTCCCGGTGCTAAGTCCTTAGTATAAt----------------
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     2645 138 +    37134 GAATGAATTTGGGAAGAGCTTTGTTAGTAGAAAACGATCTGCAAATGCATGGAATTGGTGTGTCTATTGTCAGAGAACAACGTAAACCACACCTATTCCTGGTGCTAAGTCCTTAGCATAAATTCTTCTTTATAGTAA
i calJac3.chr5_ACFV01176693_random C 0 C 0
s cebCap1.NW_016107543v1              29667 138 -  4077172 GAATAAATTTGGGAAGAGCTTTGTTAGTAGAAAATGGTCTGCAAATGCATGGAATTGGTGTGTCTACTGTCAGAGAACAACGTAAACCACACCTCTTCCTGGTGCTAAGTCCTTAGTATAAATTCTTCTTTATAGTCA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              23196 138 -    94492 GAATGAATTTGGGAAGAGCTTTGTTAGTAGAAAATGATCTGCGAATGCATGGAATTGGTGTGTCTACTGTCAGAGAACGACGTAAGCCGCACCTCTTCCCGGTGCTAAGTCCTTAGTACAAATTCTTCTTTATAGTAA
i aotNan1.NW_018505111v1           C 0 C 0
e dasNov3.JH570468                   636635 11792 -   852752 T
e otoGar3.GL873537                 22864121 50595 + 28711273 I
e saiBol1.JH378271                  1888661 14031 +  3513951 T
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=4095.000000
s hg38.chr17_JH159148v1_alt           81160 1 +    88070 T
s gorGor5.CYUI01015385v1            4143720 1 +  4267968 T
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30188531 1 - 77216781 t
i rheMac8.chr16                    I 335 C 0
s macFas5.chr16                    28098818 1 - 80997621 T
i macFas5.chr16                    I 316 C 0
s cerAty1.NW_012006043v1            2052081 1 -  8458610 T
i cerAty1.NW_012006043v1           I 314 C 0
s chlSab2.chr16                    64984549 1 + 75148670 T
i chlSab2.chr16                    I 325 C 0
s manLeu1.NW_012106252v1            2246438 1 +  4244037 t
i manLeu1.NW_012106252v1           C 0 I 884
s calJac3.chr5_ACFV01176693_random     2783 1 +    37134 T
i calJac3.chr5_ACFV01176693_random C 0 C 0
s cebCap1.NW_016107543v1              29805 1 -  4077172 T
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              23334 1 -    94492 T
i aotNan1.NW_018505111v1           C 0 C 0
e dasNov3.JH570468                   636635 11792 -   852752 T
e otoGar3.GL873537                 22864121 50595 + 28711273 I
e saiBol1.JH378271                  1888661 14031 +  3513951 T
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=811594.000000
s hg38.chr17_JH159148v1_alt           81161 307 +    88070 CTGTAAATGTGACATCAGTAGAGGTgaaatcagaaaccctgagcctagagccaattctgtccatccttagctacatgacacgatgcaggccactttactcatcttggTTCTGTCCAAGTTTGAGGCTTCTATGTGACTTAGATGAGATAATATATGTGAGATGcaaaacaatcactgaaacaaaacaaaacacaacaCAGGAGGCACTATAGTAAACGCTTTATTAGGAAATAAATAAAGCAATGCTCCTTTCTGCTAAGAAGATAATACAGAGTTGTCATGGAA-AGTCACAAAAGTGAGTATTAAT
s gorGor5.CYUI01015385v1            4143721 307 +  4267968 CTGTAAATGTGACAGCAGTAGAGGTGAAATCAGAAACCCTGAGCCTAAAGCCAATTGTGTCCATCCTTAGCTACATGACACGATGCAGTCCACTTTACTCATCTTGGTTCTGTCCAAGTTTGAGGCTTCTATGTGATTTAGATGAGATAATATATGTGAGATGcaaaacaatcactgaaacgaaacaaaacacaacaCAGGAGGCACTATAGTAAACACTTTATGAGAAAATAAATAAAGCAACGCTCCTTTCAGCTAAGAAGATAATACAGAGTTGTCATGGAA-AGTCACAAAAGTGAGTATTAAT
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30188532 302 - 77216781 ctataaatGTGACAGCAGCAGAGCTGAAATCAGAAACCAAGAGCTTAGAGCCGATTCTGTCCATCATTAGCTACATGACACGATGCAGGCCACTTTGCTCATCTTGGTTCTGTCCATGTTTGAGGCTATTATGTTAGTTAGATGAGATAATATATGTGAGATGCAAAGCAATCATAGACACAAAACAAAACACAATACAGGAGGCACTATAGTAAATACTTTATTAGGAAATAAAT-----AACCCTCCTTGCAGCTAGGAAGATAATACAGAGTCGTCATGGGA-AGTCACAAAAATGAGTATTATG
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28098819 302 - 80997621 CTATAAATGTGACAGCAGCAGAGCTGAAATCAGAAACCCTGAGCCTAGAGCCGATTCTGTCCATCCTTAGCTACATGACACGATGCAGGCCACTTTGCTCATCTTGGTTCTGTCCATGTTTGAGGCTACTATGTTACTTAGATGAGATAATATATGTGAGATGCAAAGCAATCATAGACACAAAACAAAACACAATACAGGAGGCACTATAGTAAAGACTTTATTAGGAAATAAAT-----AACCCTCCTTGCAGCTAGGAAGATAATACAGAGTCGTCATGGGA-AGTCACAAAAATGAGTATTATG
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2052082 306 -  8458610 CTGTAAATGTGACAGCAGCAGAGCTGAAATCAGAAACCCTGAGCCTAGAGCCGATTCTGTCCATCCTTAGCTACATGACACGATGCAGGCCACTTTGCTCATCTTGGTTCTGTCCATGTTTGAGGCTACTATGTTACTTAGATGAGATAATATATGTGAGATGGAAAGCAATCATAGACACAAAACAAAACACAATACAGGAGGCACTATAGTAAAGACTTTATTAGGAAATAAAT-AAACAACCCTCCTTGCAGCTAGGAAGATAATACAGAGTCGTCATGGGA-AGTCACAAAAATGAGTATTATG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64984550 306 + 75148670 CTGTAAATGTGACAGCAGCAGAGCTGAAATCAGAAACCCTGAGCCTAGAGCCGATTCTGTCCATCCTTAGCTACATGACACGATGCAGGCCACTTTGCTCATCTTGGTTCTGTCCAAGTTTGAGGCCACTATGTTACTTAGATGAGATAACATATGTGAGATGCAAAGCAATCATAGACACAAAACAAAACACAATACAGGAGGCACTATAGTAAAGACTGTATTAGGAAATAAAT-AAGCAACCCTCCTTGCAGCTAGGAAGATAATACAGAGTTGTCATGGAA-AGTCACAAAAATGAGTATTATG
i chlSab2.chr16                    C 0 C 0
s calJac3.chr5_ACFV01176693_random     2784 298 +    37134 TTGTGAATTTGACagcgccacagctgaaatcagaaatcctgggcctagacccgattctgtctgtccttagctacgtgacatgatgcaggtcattttactcatcttgacTCTGTCCAAGTTTGAGGCTGTCATGTGACTTAGATGAGATAGTGTATGTGAGTTGCAAAACAATCATAGAAACAACACAAAACATAGTACAGGGGGCACTGTAGTAAAGACTTTACTAGGACAT-----AAGCAATGCTCCTTTCAGCTAGGAGAATAC-----GGTTGTCATGGAAGAGTCACAAAAATTCATATTATA
i calJac3.chr5_ACFV01176693_random C 0 C 0
s cebCap1.NW_016107543v1              29806 307 -  4077172 CTGTAAATGTGACAACACCACAGCTgaaatcagaaaccctgggcctagacccgattctgtctgtccttagctacatggcatgacgcaggtcactttactcaccttggttctGTCCAAGTTTGAGGCTGTCATGTGACTTAGATTAGATAATGTATGTGAGATGCAAAACAATCATGGAAACAATACAAAACATAATACAGGAGACATGATAGTAAAGGCTTTATTAGGAAATAAAC-AAGCAATGCTCCTTTCAGCTAGGAAGATAATACAGAGTTGTCATAGAAGAGTCACAAAAATTTGTATTATA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              23335 304 -    94492 CTGTAAATGTGACAGCACCACAGCTGCaatcagaaaccccgggcctagacccgattctgtccatccttagctacatggcatgacgcaggtcactttactcatcttggttctgtccaagtttgaggctgtcatgtgacttagatgagataATGTATGTGAGATGCAAAACAATCATAGAAACAATACAAAGCATAATACAGGAGGCACGA---TAAAGGCTTTATTAGGAAATAAAC-AAGCAATGCTCCTTTCAGCTAGGAAGATAATACAGAGTTGTCATGGAAGAGTCACAGAAATTTGTATTATA
i aotNan1.NW_018505111v1           C 0 C 0
e manLeu1.NW_012106252v1            2246439 884 +  4244037 I
e dasNov3.JH570468                   636635 11792 -   852752 T
e otoGar3.GL873537                 22864121 50595 + 28711273 I
e saiBol1.JH378271                  1888661 14031 +  3513951 T
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=357407.000000
s hg38.chr17_JH159148v1_alt           81468 94 +    88070 TTGAAACAAAATGATATTTATCATTGTAAAGATCTAATAAGggccgggtgtggtggctcatggctgtaatcccaacactttgggaggccgaggt
s gorGor5.CYUI01015385v1            4144028 94 +  4267968 TTGAAACAAAATGATATTTATCATTGTAAAGATCTAATAAGggccaggtgtggtggctcatggctgtaatcccaacactttgggaggccaaggt
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30188834 94 - 77216781 TTGAAACAAAATGATATTTATCATTGTAAAGATCTAATAAGggccgggtgtggtggctcatggctgtaatcccagcactttgggaggctgaggt
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28099121 94 - 80997621 TTGAAACAAAATGATATTTATCATTGTAAAGATCTAATAAGggccgggtgtggtggctcatggctgtaatcccagcactttgggaggctgaggt
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2052388 94 -  8458610 TTGAAACAAAATGATATTTATCATTGTAAAGATCTAATAAAggctgggtgtggtggctcatggctgtaatcccagcactttgggaggccgaggt
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64984856 91 + 75148670 TTGAAACACA---ATATTTATCATTTTAAAGATCTAATAAGggccgggtgtggtggctcatggctgtaatcccagcactttgggaggccgaggt
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2247323 94 +  4244037 TTGAAACAAAATGATATTTATCATTTTAAAGATCTAATAAGggcggggtgtggtggctcatggctgtaatcccagcactttgggaggccgaggt
i manLeu1.NW_012106252v1           I 884 C 0
s calJac3.chr5_ACFV01176693_random     3082 94 +    37134 TTGAAATAAAATGATATTTATCATTGTAAAGATCTAATAAGggctgggtgtggtggcttatgcctataatcccagcactttgggaggccaaggt
i calJac3.chr5_ACFV01176693_random C 0 C 0
s cebCap1.NW_016107543v1              30113 92 -  4077172 TTGAAACAAAATG--ATTTATCATTGTAAAGATCTAATAAGggccaggtgtggtggcttatgcctataatcccagcactttgggaggccaaggt
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              23639 94 -    94492 TTGAAACAAAATGATATTTATCATTGTAAAGATCTAATAAGggctgggtgtggtggcttatgcctataatcccagcactttgggaggccaaggt
i aotNan1.NW_018505111v1           C 0 C 0
e dasNov3.JH570468                   636635 11792 -   852752 T
e otoGar3.GL873537                 22864121 50595 + 28711273 I
e saiBol1.JH378271                  1888661 14031 +  3513951 T
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=874980.000000
s hg38.chr17_JH159148v1_alt           81562 530 +    88070 gggcagatctcctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatac-aaaaaattagtcagatgtggtggcaggaacctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacctgggagcacagaggtgtcagtgagctgagatcgcgccattgcactttagcctgggcaacaagagtgaaactctgtttaaaaaaa-aa--gaaaaaaaaaTT--AATAAGACAGCTATGAGAATTT--TTTTTCTTTTTAGAAATTTTCCTAGAGTAAAAAAACAAAGATAATTTTGTCAACGCTCAGATCATAAATCCAGGTCAAGAACAGATGAAGCTGACCAGCAGCTGGCTCAATGAAGAGACTATCGGAGTGAAAAAGGCTACACTCATTAAGCAAGTTCAT-AATTTGTTAACAAGAAGATGACTGACAGTTTAGTGACAGTATGTATGTTATCAGCAGAGGAAGTGGAGTGAGTTTGCCATAGAAATGGATATCTggc
s gorGor5.CYUI01015385v1            4144122 530 +  4267968 gggcagatctcctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatac-aaaaaattggtcggatgtggtggcaggaacctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacctgggagcacagaggtgtcagtgagctgagatcgcgccattgcactttagcctgggcaacaagagtgaaactctgtctcaaaaaa-ag--aaaaaaaaaaTT--AATAAGACAGCTATGAGAATTT--TTTTTCTTTTTAGAAATTTTCCTAGAGTAAAAAAACAAAGATAATTTTGTCAATGCTCAGATCATAAATCCAGGTCAAGAACAAATGAATCTGACCAGCAGCTGGCTCAATGAAAAGAATATCAGAGTGAAAAAGGCTGCACTCATTAAGCAAGTTCAT-AATTTGTTAACAAGAAGATGACTGACAGTTTAGTGACAGTATGTATGTTATCAGCAGAGGAAGTGGAGTGAGTTTGCCATAGAAATGGATATCTggc
i gorGor5.CYUI01015385v1           C 0 C 0
s chlSab2.chr16                    64984947 538 + 75148670 gggcggatcacctgaagtcaggagttcaagaccagcctggccaacatggtgaatccctgtctctactaaaaatacaaaaaaattagtcgggtgtggtggcaggcacctgtaatcccagctactcgggaggctgaggcaggagaatcatttgaacctgggagcatggaggagtcagtgagctgagatcgtgccattgcactttaacctgggcaataagagtgaaactctgtctcaaaaaa-aaagaaaaaaaaaaaTCGAATAAGACAGCTATGAGAATTTTCTTTTTCTTTTTATAAATTTTCCTAGGGTAAAAAAGCAAAGATCATTTCGTCAACGCTCAGAGCATAAATCCAGGTCAAGAACAGATGAAGCTGACCAGCAGCTGGCTCAATGAAGAGAATATTGGGGTGAAAAAGGCTACACTCATTAAGCAAGCTCATAAATCTGTTAACAAGAAGATGACTGACAGTTTAGTGACAGCATGTATGTTATCAGCAGAGGAAGTGGAGTGAGTTTGCCATAGAAATGGATATCTggc
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2247417 536 +  4244037 gggtggatcacctgaagtcaggagttcgagaccagcctggccaacatggtgaatccctgtctctactaaaaatacaaaaaaattagtcgggtgtggtggcaggcacctgtaatcccagctactcgggaggctgaggcaggagaatcatttgaaactgggagcatggaggagtcagtgagctgagatcgtgccattgcactttaacctgggcaatgagagtgaaactctgtctcaaaaaa-aa--gaaaaaaaaaaTCGAATAAGACAGCTATGAGAATTTTCTTTTTCTTTTTATAAATTTTCCTAGGGTAAAAAAACAAAGATCATTTCGTCAACGCTCAGACCATAAATCCAGGTCAAGAACAGATGAAGCTGACCAGCAGCTGGCTCAAAGAAGAGAATATCAGAGTGAAAAAGGCTACACTCACTAAGCAAGCTCATAAATCTGTTAACAAGAAGATGACTGACAGTTTAGTGACAGCATGTATGTTATCAGCAGAGGAAGTGGAGTGAGGTTGCCATAGAAATGGATATCTGGC
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     3176 533 +    37134 gggcagatcacctgcgatcgagagtttgagacctgcctggccaacatggtaaaaccccatctctactaaaaatac-aaaaaattagccaggtgtggcggcaggcacctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggag-gcggaggttgcagtgagccaagattgtgccattgcactccaccctgggcaataagagtgaaactctgtttcaaaaagaaa--aaaaaaaGATCT--AATAAGACAGCTATGAGAGTTTTCTTTTTCTTTTTAGAAATTTTCTTAGGGTTAAAAAACAAAGATCATTTTGTCAAGGCTCAGACCATAAATCCAGGTCAAGAACAGATGAAACTGACTAGCAGCTGGCTCAGTGAAGAGAATATTGGAGTGAAAAAGATTGCATTCATTAAGCAACCTCATAAATCTGTTAACAAGAAGATGACTGACAGTTTAGTGACAGCATATATGTTATCAGCAGAGGAAGTGGAGTGGGTTTGCCATAGAAATGGATATCTGgg
i calJac3.chr5_ACFV01176693_random C 0 C 0
s cebCap1.NW_016107543v1              30205 532 -  4077172 gggcggatcacctgagatcaggagtttgagaccagcctggccaacatggtaaaaccccatctctactaaaaatac-aaaaaattagccaggtgtggtggcaggcaccggtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaa-gcagaggttgcagtgagctgagattgcaccattgcactccaccctaggcaataagagtgaaattccgtctcaaaaag-aa--aaaaaaaGATCT--AATAAGACAGCTATGAGAGCTTTCTTTTTTTTTTTAGAAATTTTCCTAGGGTAAAAAAACAGAGATCATTTTGTCAAGGCTCAGACCATAAATCCACATCAAGAACAGATGAAGCTGACCAGCAGCTAGGTCAATGAAGAGAATATTGGAGTGAAAAAGATTGCACTCATTAAGCAACCTCATAAATCTGTTAACAAGAAGATGACTGACAGTTTACTGACAGCATATATGTTATCAGCAGAGGAAGTGGAGTGAGTTTGCCACAGATATGGATAACTGgg
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              23733 529 -    94492 gggcggatcacctgagatccggagtttgagaccagcctggccaacatggtaaaaccccatctctactaaaaatac-aaaaaatcagccaggtatggtggcaggcaccggtaatctcagctactcaggaggctgaggcaggagaatcacttgaacctgggag-gcggaggttgcagtgagccgagattgcgccattgcactccaccctgggcaataagagtgaaattccgtttcaaaaag--a--aaaaaaaGATCT--AATAAGACAGATATGAGAGTTTTCTTTTTCTTTTTAGAAATATTCCTAGGGTAAAAAAAC--AGATCATTTTGTCAAAGCTCAGACCATAAATCCAGGTCAATAACAGATGAAGCTGACCAGCAGCTGGCTCAATGAAGAGAATATTGGAGTGAAAAAGATTGCACTCATTAAGCAACCTCATAAATCTGATAACAGGAAGATGACTGACAGTTTACTGACAGCATATATGTTATCAGCAGAGGAAGTAGAGTGAGTTTGCCACAGAAATGGATATCTGgg
i aotNan1.NW_018505111v1           C 0 C 0
e dasNov3.JH570468                   636635 11792 -   852752 T
e otoGar3.GL873537                 22864121 50595 + 28711273 I
e saiBol1.JH378271                  1888661 14031 +  3513951 T
e cerAty1.NW_012006043v1            2052482   0 -  8458610 C
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I
e macFas5.chr16                    28099215   0 - 80997621 C
e rheMac8.chr16                    30188928   0 - 77216781 C

a score=98538.000000
s hg38.chr17_JH159148v1_alt           82092 51 +    88070 ctgggcgtggtggctcatgcctgtaatcccagcactttgggaggtcaaggc
s gorGor5.CYUI01015385v1            4144652 51 +  4267968 ctgggcgtggtggctcatgcctgtaatcccagcactttgggaggtcaaggc
i gorGor5.CYUI01015385v1           C 0 C 0
s chlSab2.chr16                    64985485 51 + 75148670 ctgggcgggttggctcatgcctgtaatcccaacactttgggaggctgaggt
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2247953 51 +  4244037 ccgggcgggttggctcatgcctgtaatcccaacactttgggaggctgaggt
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     3709 51 +    37134 ccctgcatggtggcttacgcctgtaatcctagcactttgggaggccaaggt
i calJac3.chr5_ACFV01176693_random C 0 C 0
s saiBol1.JH378271                  1874630 51 +  3513951 ccgggcagggtggctcacacctctaatcccagtattttggggggttgaagt
i saiBol1.JH378271                 T 14031 C 0
s cebCap1.NW_016107543v1              30737 51 -  4077172 ccctgcatggtggcttacgcctgtaatcctagcactttgggaggccaaggt
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              24262 51 -    94492 ccctgcatggtggcttactcttgtaatcctagcactttgggaggccaaggt
i aotNan1.NW_018505111v1           C 0 C 0
e dasNov3.JH570468                   636635 11792 -   852752 T
e otoGar3.GL873537                 22864121 50595 + 28711273 I
e cerAty1.NW_012006043v1            2052482  0 -  8458610 C
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I
e macFas5.chr16                    28099215  0 - 80997621 C
e rheMac8.chr16                    30188928  0 - 77216781 C

a score=965970.000000
s hg38.chr17_JH159148v1_alt           82143 265 +    88070 gggtggatcatctgaggtcaggtgtttgaga-ccagcctgaccaacatggagaaaccccatctctacgaaaaatac--aaaattagctgggcatgatggcgtatgcctgtaatctcagctactcgggaggctgaggcaggggaatggctggaacccaggaggtggaggttgcggtgagctaagatcatgccattgcactccagcctgggcaacaagagcgaaactgggtctcaaaaaaaa--------------------------------------------------------------aaa------------aaaaa---------------aaaaagaataaaTGG-----------ATACC
s gorGor5.CYUI01015385v1            4144703 264 +  4267968 gggtggatcatctgaggtcaggtgtttgaga-ccagcctgaccaacatggagaaaccccatctctacgaaaaatac--aaaattagctgggcatgatggtgcatgcctgtaatcccagctactcgggaggctgaggcaggggaatggctggaacccaggaggtggaggttgcggtgagctaagatcatgccattgaactccagcctgggcaacaagagcgaaactaggtctc-aaaaaaa--------------------------------------------------------------aaa------------aaaaa---------------aaaaTGAATAAATGG-----------ATACC
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30188928 275 - 77216781 gagtggatcacctgaggtcaggagttcgaga-ccagcctgaccaacatggagaaaccctgtctctactagaaatac--aaaattagccgggtgtggtggtgcatgcctgtaatcccagccactcgggaggctgaggcaggagaatggcttgaacccaggaggcggacgttgcagtgagctgagatcatgccattgcactccagcctgggcaacaagagcaaaactatgtcaa-aaaaaaa--------------------------------------------------------------aaa------------aaaaa---------------aaaaaaagtaaaaGAAAGAAATGGATATATC
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28099215 275 - 80997621 gagtggatcacctgaggtcaggagttcgaga-ccagcctgaccaacatggagaaactccgtctctactagaaatac--aaaattagccgggtgtggtggtgcatgcctgtaatcccagccactcgggaggctgaggcaggagaatggcttgaacccaggaggcggacgttgcagtgagctgagatcatgccattgcactccagcctgggcaacaagagcaaaactatgtcaa-aaaaaaa--------------------------------------------------------------aaa------------aaaaa---------------aaaaaaagtaaaaGAAAGAAATGGATATATC
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2052482 243 -  8458610 gagtggatcacctgaggtcaggagttcgagacccagcctgaccaacatggagaaaccccgtctctactagaaatac--aaaattagccgggtgtggtggtgcatgcctgtaatcccagccactcgggaggctgaggcaggagaatggcttgaacccaggaggcagaggttgcagtgagctgagatcatgccattgcactccagcctg------------------------------------------------------------------------------------------------aa------------aaaaa---------------aaaaaaagtaaaagaaagaaaTGGATATATC
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64985536 290 + 75148670 gggtggatcacctgaggtcaggagttcgaga-ccagcctgaccaacatggcgaaaccccatctctactagaaatac--aaaattagctgggcatggtggcgcatgcctgtaatcctagctactcgggaggctgaggcaggagaatggcttgaacccaggaggcggaggttgcagtgagctgagatcgtgccattgcattccagcctgggcaacaagagcaaaactatgtcaa-aaaaaaa--------------------------------------------------------------aaa------------aaaaaaaggaaaaggaaaGGAAAAAAAGTAAAAGAAAGAAAGGGATATATC
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2248004 290 +  4244037 gggtagatcacctgaggtcaggagttcgaga-ccagcctgaccaacatggagaaaccccatctctactagaaatac--aaaattagctgggcatggtggcgcatgcctgtaatcccagctactcaggaggctgaggcaggagaatggcttgaacccaggaggcggaggttgcagtgagctgagatcgtgccattgcattccagcctgggcaacaagagcaaaactatgtcaa-aaaaaaa--------------------------------------------------------------aaa------------aaaaaaaaggaaaggaaaGAAAAAAAAGTAAAAGAAAGAAAGGGATATATC
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     3760 285 +    37134 gggtggatcacctgaggttgggagtttgaga-ccagcctgacaaatatggagaaaccctgtctctactaaaaatac--aaaattagccgggcatggtggcacatgcctataatcccagttactcaggatgctgaggcaggagaatcacttctacccaggaggtggaggttgcggtgagccgagatcatgccattgcactccagcctgggcaacaagagtgaaactccatctc-aaaaaaa--------------------------------------------------------------aaaaaaaaaagagaaaagaa---------------aagaaaaaagaaagaaaGAAATGG--ATATC
i calJac3.chr5_ACFV01176693_random C 0 C 0
s saiBol1.JH378271                  1874681 240 +  3513951 gggtgaatcacttgagatcaggtgtttgaga-ccagcctgatcaacatggtgaaaatccatctttactaaaaatacaaaaaattagccaggcatggtggaacagacctgtcatcccagctagttgggaggttgaggcaggagaattggttgaacctgggaggcagaggttacagtgagccaaaatcaagctactgcactccagcctgggtgacaa-agtgagactctgtctc-agaaaag--------------------------------------------------------------aaa---------------------------------------------------------------
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              30788 340 -  4077172 gggtggatcacctgaggttgggagttcgaga-ccaacctgatagatatggagaaaccctgtctctactaagaatac--aaaattagccaggcatggtgacacatgcctgtaatcccagctactcaggatgctgaggcaggagaatcacctcaacccgggaggtggaggttgcgatgaactgagatcatgccattgcactccagcctgggcaacaagagtgaaactccgtctc-aaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaa-------aaaaaaaaaa---------------aaaaaaatagaaagaaataaaTGG--ATATC
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              24313 262 -    94492 gggtggatcacctgaggttgggagttcgaga-ccagcctgacaaatatggagaaaccctgtctctactaaaaatac--aaaattagccgggcatggtggcacatgcctgtaatcccagctactcaggatgctgaggcaggagaatcacttcaacccgggaggtggaggttgcggtgagctgagatcatgccattgcactctagcctgggcaacaagagtgaaactccgtctc-aaaaaaa--------------------------------------------------------------aag--------------------------------------aaagaaagaaaGAGATGG--ATATC
i aotNan1.NW_018505111v1           C 0 C 0
e dasNov3.JH570468                   636635 11792 -   852752 T
e otoGar3.GL873537                 22864121 50595 + 28711273 I
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=17945.000000
s hg38.chr17_JH159148v1_alt           82408 4 +    88070 TGGC
s gorGor5.CYUI01015385v1            4144967 4 +  4267968 TGGC
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30189203 4 - 77216781 TGGC
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28099490 4 - 80997621 TGGC
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2052725 4 -  8458610 TGGC
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64985826 4 + 75148670 TGGC
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2248294 4 +  4244037 TGGC
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     4045 4 +    37134 TGCC
i calJac3.chr5_ACFV01176693_random C 0 C 0
s cebCap1.NW_016107543v1              31128 4 -  4077172 TGGC
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              24575 4 -    94492 TGGC
i aotNan1.NW_018505111v1           C 0 C 0
s dasNov3.JH570468                   624843 4 -   852752 TGGT
i dasNov3.JH570468                 T 11792 C 0
e otoGar3.GL873537                 22864121 50595 + 28711273 I
e saiBol1.JH378271                  1874921 0 +  3513951 C
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=197387.000000
s hg38.chr17_JH159148v1_alt           82412 56 +    88070 TGGTCTGATGATGG--AAGTTTA---------TTCTATGCAGGTAGTAATCTGTGGTAA---GTTGATCA
s gorGor5.CYUI01015385v1            4144971 56 +  4267968 TGGTCTGATGATGG--AAGTTTA---------TTCTATGCAGGTAGTAATCTGTGGTAA---GTTGATCA
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30189207 56 - 77216781 TGGTCTGATCATGG--AACTTTA---------TTCCATGTAGATAGCGATCTGTGGTAA---GTTGATCA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28099494 56 - 80997621 TGGTCTGATCATGG--AACTTTA---------TTCCATGTAGATAGCGATCTGTGGTAA---GTTGATCA
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2052729 56 -  8458610 TGGTCTGATCATGG--AACTTTA---------TTCCATGTAGATAGCGATCTGTGGTAA---GTTGATCA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64985830 55 + 75148670 TAGTCTGATCATGG--AACTTTA----------TCCATGTAGATAGTGATCTATGGTAA---GATGATCA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2248298 56 +  4244037 TAGTCTGATCATGG--AACTTTA---------TTCCATGTAGATAGTGATCTGTGGTAA---GATGATCA
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     4049 59 +    37134 TATTCTGATGATGG--AAGTTTG---------TATTATGCAGGTAGTGATCTGTGGTGGTAAGTTGATCA
i calJac3.chr5_ACFV01176693_random C 0 C 0
s saiBol1.JH378271                  1874921 48 +  3513951 ---------GTCAG--AAGATTG---------CTGTATAAGGATGATGGTCCTTGGCAAT--GCTGATCA
i saiBol1.JH378271                 C 0 I 27626
s cebCap1.NW_016107543v1              31132 56 -  4077172 TATTCTGATGATGG--AAGTTTG---------TATTATGCGGGTAGTGATCTGTGGTAA---GTTGATCA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              24579 56 -    94492 TGTTCTGATGATGG--AAGTTTG---------TATTATGCAGGTAGTGATCTGTGGCAA---GTTGATCA
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22914716 61 + 28711273 TAGTTTGATGATGGCAAAGCCTGGAGAGTGATTTTGGTGCAG-----GACCTG-GGTTA---GGCGATGC
i otoGar3.GL873537                 I 50595 C 0
s dasNov3.JH570468                   624847 56 -   852752 GGGTCAGTTGACAG--TAGGTTG---------ATCTGTGCACTTGGTGGTTTTTGGTGA---GTTGATCA
i dasNov3.JH570468                 C 0 C 0
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=65001.000000
s hg38.chr17_JH159148v1_alt           82468 15 +    88070 ATAACTGCAAGGCTG
s gorGor5.CYUI01015385v1            4145027 15 +  4267968 ATAACTGCAAGGCTG
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30189263 15 - 77216781 ATAACTGCAAGGCTG
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28099550 15 - 80997621 ATAACTGCAAGGCTG
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2052785 15 -  8458610 ATAACTGCAAGGCTG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64985885 15 + 75148670 ATAACTGCAAGGCTG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2248354 15 +  4244037 ATAACTGCAAGGCTG
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     4108 15 +    37134 ATAACTATAGGGCTG
i calJac3.chr5_ACFV01176693_random C 0 C 0
s cebCap1.NW_016107543v1              31188 15 -  4077172 ATAACTATAGGGCTG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              24635 15 -    94492 ATAACTATAGGGCTG
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22914777 15 + 28711273 AAAACCAGAATGTGG
i otoGar3.GL873537                 C 0 C 0
s dasNov3.JH570468                   624903 15 -   852752 GCAACAGGAAGGCTG
i dasNov3.JH570468                 C 0 I 14392
e saiBol1.JH378271                  1874969 27626 +  3513951 I
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=54148.000000
s hg38.chr17_JH159148v1_alt           82483 14 +    88070 GCAGCCCCTAGACA
s gorGor5.CYUI01015385v1            4145042 14 +  4267968 GCAGCCCCTAGACA
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30189278 14 - 77216781 GCAGTCCCTAGACA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28099565 14 - 80997621 GCAGTCCCTAGACA
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2052800 14 -  8458610 GCAGTCCCTAGACA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64985900 14 + 75148670 GCAGCCCCTAGACA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2248369 14 +  4244037 GCAGCCCCTAGACA
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     4123 14 +    37134 GCAGTCCCTAGACA
i calJac3.chr5_ACFV01176693_random C 0 C 0
s cebCap1.NW_016107543v1              31203 14 -  4077172 GCAGTCCCTAGACA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              24650 14 -    94492 GCAGTCCCTAGACA
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22914792 13 + 28711273 CAAGTGCTTGGTC-
i otoGar3.GL873537                 C 0 C 0
e dasNov3.JH570468                   624918 14392 -   852752 I
e saiBol1.JH378271                  1874969 27626 +  3513951 I
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=3256.000000
s hg38.chr17_JH159148v1_alt           82497 1 +    88070 ---C
s gorGor5.CYUI01015385v1            4145056 1 +  4267968 ---C
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30189292 1 - 77216781 ---C
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28099579 1 - 80997621 ---C
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2052814 1 -  8458610 ---C
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64985914 1 + 75148670 ---C
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2248383 1 +  4244037 ---C
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     4137 1 +    37134 ---C
i calJac3.chr5_ACFV01176693_random C 0 C 0
s saiBol1.JH378271                  1902595 1 +  3513951 ---C
i saiBol1.JH378271                 I 27626 C 0
s cebCap1.NW_016107543v1              31217 1 -  4077172 ---C
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              24664 1 -    94492 ---C
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22914805 4 + 28711273 TTCA
i otoGar3.GL873537                 C 0 C 0
e dasNov3.JH570468                   624918 14392 -   852752 I
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=1104001.000000
s hg38.chr17_JH159148v1_alt           82498 207 +    88070 ACAACAG-GCTGATTGGCAGCAGG---GCTAGCAGCAGCTGGATCCATAGCTCTGGTTTAGGCAACCTGTCAGGCAGACACACATGGGGTGGTAGCAAGTTCTCCTGTAGTAGATGG-----------------------------GTGCA-CAGAAGCTGGGCTGGCAGCAGCTGGACCCACTGCCAGTTTGGCCGTAACAGCTG------GACCCACAGCAGGTGGGCTG---GCAGCAGGGTGTGCT
s gorGor5.CYUI01015385v1            4145057 207 +  4267968 ACAACAG-GCTGGTTGGCAGCAGG---GCTAGCAGCAGCTGGATCCATAGCTCTGGTTTAGGCAACCAGTCAGGCAGACACACATGGGGTGGTAGCAAGTTCTCCTGTAGTAGATGG-----------------------------GTGCT-CAGAAGCTGGGCTGGCAGCAGCTGGACCTACTGCCAGTTTGGCCGTAACAGCTG------GACCCACAGCAGGTGGGCTG---GCAGCAGGGTGTGCT
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30189293 207 - 77216781 ACAAGAG-GCTGGGCAGCAGCAGT---GCTGGTAGCAGCTGGAGCCACAGCTCTGGTCTAGGCAACCAGACAGGCAGACACACATGGTGTGGCAGCAGGTTCTCCTGCAATAGACAG-----------------------------GTGCA-CAGGAGATGGGCTGGCAGCAGCTGGACCCACTGCCAGTTTGGCCATAACAGCTG------GACCTACGGCAATTGGGCTG---GCAGCAGGGTGTGCT
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28099580 207 - 80997621 ACAAGAG-GCTGGGCAGCAGCAGT---GCTGGTAGCAGCTGGAGCCACAGCTCTGGTCTAGGCAACCAGACAGGCAGACACACATGGTGTGGCAGCAGGTTCTCCTGCAGTAGACAG-----------------------------GTGCA-CAGGAGATGGGCTGGCAGCAGCTGGACCCACTGCCAGTTTGGCCATAACAGCTG------GACCTACGGCAATTGGGCTG---GCAGCAGGGTGTGCT
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2052815 207 -  8458610 ACAAGAG-GCTGGGCAGCAGCAGT---GCTGGTAGCAGCTGGAGCCACAGCTCTGGTCTAGGCAACCAGACAGGCAGACACACATGGGGTGGCAGCAGGTTCTCCTGCAGTAGACAG-----------------------------GTGCA-CAGGAGATGGGCTGGCAGCAGCTGGACCCACTGCCAGTTTGACCATAACAGCTG------GACCTACAGCAATTGGGCTG---GCAGCAGGGTGTGTT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64985915 204 + 75148670 ACAAGAG-GCTGGGCAGCAGCAGG---GCTGGCAGCAGCTGGATCCACAGCTCTGGTTTAGGCAACCAGGCAGGCAGACATACATGAGGTGGCAGCAGGTTCTCCTGCAGTAGACAG-----------------------------GTGCA-CAGGAGCTGGGCTGGCAGCAGCTGGACCCACTGCCAGTTTGGCCATAACAGCTG------GACCTACGGCAATTGGGCT------AGCAGGGTGTGCT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2248384 207 +  4244037 ACAAGAG-GCTGGGCAGCAGCAGG---GCTGGCAGCAGCTGGATCCACAGCTCTGGTTTAGGCAACCAGGCAGGCAGACACACATGAGGTGGCAGCAGGTTCTCCTGCAGTAGACAG-----------------------------GTGCA-CAGGAGCTGGGCTGGCAGCAGCTGGACCCACTGCCAGTTTGGCCATAACAGCTG------GACCTACGGCAATTGGGCTG---GCAGCAGGGTGTGCT
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     4138 197 +    37134 ACAGCAG-GCTGGGCGGCAGCAAG-------------GATGGATTCACAGCTCTGGTTTAGGCAACCAGGCAGGAAGACACGCATGGGGTGGTAGCAGGTTCTCCTGCAGTACATGG-----------------------------GTGCT-CAGGAGCTGGGTTGGCAGCAGCTGGACCCACTGCCAGTTTGGCCATAACAGCTG------GAGCTGCAGTAGGTGAGCTG---GCAGCAGGGTGTGCT
i calJac3.chr5_ACFV01176693_random C 0 C 0
s saiBol1.JH378271                  1902596 210 +  3513951 ACAGCAG-GCTGGGCGACAGCAGG---GCTGGCAGCAGCTGGATCCACAGCTCTGGTTTAGGCAACCAGGAAGGCAGACACACGTTGGGTGGTAGCAGGTTCTCGTGCAGTACACAG-----------------------------GTGCA-CAGGAGCTGGTCTGGCCACAACTGGACCCACAGCTGGTTTGGCCACAGCAGCTG------GACTCACAGCAGGTGGGCTGGCAGCAGCAGGGTGTGCT
i saiBol1.JH378271                 C 0 T 27837
s cebCap1.NW_016107543v1              31218 207 -  4077172 ACAGCAG-GCTGGGCGGCAGCTGG---GCTGGCAGCAGCTGGATCCACAGGTCTGGTCTAGGCAACCAGGCAGGAAGGCACACATGGGCTGGTAGCAGGTTCTCCTGCAGTACATGG-----------------------------GTGCA-CAGGAGCTGGGTTGGTAGCAGCTGGACCCACTGCCAGTTTGGCCATAACAGCTG------GAGCTGCAGTAGGTGAGCTG---GCAGCAGGGTGTGCT
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              24665 207 -    94492 ACAGCAG-GCTGGGCGGCAGCAGG---GCTGGCAGCAGCTGGATCCACAGCTCTGGTCTAGGCAATCAGGCAGGAAGACACACGTGGGGTAGTAGCAGGTTCTCCTGCAGTACATGG-----------------------------GTGCA-CAGGAGCTGGGTTGGCAGCAGCTGGACCCACTGCCAGTTTGGCCATAACAGCTG------GAGCTGCAGTAGGTGGGCTG---GCAGCAGGGTGTGCT
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22914809 211 + 28711273 GCAAGAGTGTTGATCAGCAGCAGGAAGGCTGGCAGCAGCTGGATCCACAGCCCAGGTTCAGACAGCCAGGCAGGCAGACACAGGTGGGCTGGTAGCAGGTCCTGGTGCAGTAGACAG-----------------------------GTGCA-CAGCTGCTGGGCTGGCAGCAGGAGGTGCCACAGCAAGTGGGGCGGCAGCAGCTG------GACACACAGCAGCTGGGCTG---GCAGCAGGGTGTGCG
i otoGar3.GL873537                 C 0 C 0
s dasNov3.JH570468                   639310 243 -   852752 ACAACAA-ATTGGCCGGCAGCAGG---GGTGGCAGCAGCTGGATCAGCAGTTCTGGGGATGGCAGCCAGGCAGGCAGCAGCATGTTGGATGGTAGCAGGTTCTCCAGCAGTACACGGAGCCACTGCAAGCTGGCTGGCAGCAGGTTGTGTAGCAGCAACTGGGGTGGCAGCAGCTGGATCCAACACACGTTTGGCCACAGGATCCAACACACGTTTGGCCACAAGTGGGCTG---GCAGCAGGGAGTGGT
i dasNov3.JH570468                 I 14392 C 0
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=581320.000000
s hg38.chr17_JH159148v1_alt           82705 121 +    88070 GCAGCAGGAAGACTGGCAGCAGCTTGTCACACAGGTGTACTGGCAGCAAGTGGTCCTGCAGCAGGTGGCCTCACAGTAGGCTGGGCAGCAGGCAGCAGGGCTGGCAGCAGCTGGATCCACA
s gorGor5.CYUI01015385v1            4145264 121 +  4267968 GCAGCAGGAAGACTGGCAGCAGCTTGTCACACAGGTGTACTAGCAGCAAGTGGTCCTGCAGCAGGTGGCCTCACAGTAGGCTGGGCAGCAGGCAGCAGGGCTGGCAGCAGCTGGATCCACA
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30189500 121 - 77216781 GCACCAGGAATAATGGCAGCAGCTGGTCACACAAGTGGGCTGGCAGCAAGTAGTCTTGCAGCAGGTGGCTTCGCAGTAGGCTGGGTGGCAGGCAATAGGGCTGGCAGCAGCTGGATCCACA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28099787 121 - 80997621 GCACCAGGAATAATGGCAGCAGCTGGTCACACAAGTGGGCTGGCAGCAAGTAGTCTTGCAGCAGGTGGCTTCGCAGTAGGCTGGGTGGCAGGCAGTAGGGCTGGCAGCAGCTGGATCCACA
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2053022 121 -  8458610 GCACCAGGAATAATGGCAGCAGCTGGTCACACAAGTGGGCTGGCAGCAAGTTGTCCTGCAGCAGGTGGCTTCGCAGTAGGCTGGGTGGCAGGCAGTAGGGCTGGCAGCAGCTGGATCCACA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64986119 121 + 75148670 GCACCAGGAATAATGGCAGCAGCTGGTCACACAGGTGGGCTGGCAGCAAGTGGTCCTGCAGCAGGTGGTTTCACAGTAGGCTGGGTGGCAGGCAGCAGGGCTGGCAGTGGCTGGATCCACA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2248591 120 +  4244037 GCACCAGGAATAATGGCAGCAGCT-GTCATACAGGTGGGCTGGCAGCAAGTGGTCCTGCAGCAGGTGGCTTCACAGTAGGCTGGGTGGCAGGCAGCAGGGCTGGCAGTGGCTGGATCCACA
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     4335 105 +    37134 ---------------GCAGCAGCTGATCACACAGGCTGGTTGACAGCAGGTGGTCCTGCCACAGGTGGTCACACAGCAGGCTGGGTGGCAGC-AGGAGGGCTGGCAGCAGCTGGATCCACA
i calJac3.chr5_ACFV01176693_random C 0 C 0
s saiBol1.JH378271                  1874969 117 +  3513951 GCAGCAGGAAGGCTGGCAGCAGCTGGTTACACAGGTGGGCTGGCAGCAAGTGGTCCTGCAGCAGGTGGTCTCACAGCAGGCTGGGCGGCAGC----AGGGCTGGCAGCAGCTGGATCCACA
i saiBol1.JH378271                 T 27837 C 0
s cebCap1.NW_016107543v1              31425 102 -  4077172 ---------------ACAGCAGCTGGTCACACAGGCTGGTTGGCAGCAGGTGGTCCTGCAGCAGGTGGTCACACAGCAGGCTGGGCAGCAGG----AGGGCTGGCAGCATCTGGATCCACA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              24872 102 -    94492 ---------------GCAGCAGCTGATCACACAGGTTGGTTGGCAGCAGGTGGTCCTGCAGCAGGTGATCACACAGCAGGCTGGGCAGCAGG----AGGGCTGGCAGCAGCTGGATCCACA
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22915020  94 + 28711273 ---------------GCAGCAGGTGGTGACAGAGGTGGGTTTCCAGCAGGTGGTCCTGCAGCAGGTGGTTGGACAGCAAGTTGGGGGGCAGC----AGGGCTGGCAGCAGCTG--------
i otoGar3.GL873537                 C 0 C 0
s dasNov3.JH570468                   639553 102 -   852752 GCAGCAGGAAGGGTGGCAGCAGCTGGTCACACAGGTTGGCTGGCAGCAGGTGGTC---------------TGACAGCAGAGTGGGTGGCAGC----AAGGCTGGCAGCAGCTAGATCCACA
i dasNov3.JH570468                 C 0 I 14129
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=143451.000000
s hg38.chr17_JH159148v1_alt           82826 36 +    88070 -------------TATCTGGTC---------------------TAGG-----------CAACTAGGCAGGCAG---------ACACACAT
s gorGor5.CYUI01015385v1            4145385 36 +  4267968 -------------TATCTGGTC---------------------TAGG-----------CAACTAGGCAGGCAG---------ACACACAT
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30189621 36 - 77216781 -------------GCTCTGGTC---------------------TAGG-----------CAACCAGGCAGGCAG---------ACACACGT
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28099908 36 - 80997621 -------------GCTCTGGTC---------------------TAGG-----------CAACCAGGCAGGCAG---------ACACACGT
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2053143 36 -  8458610 -------------GCTCTGGTC---------------------TAGG-----------CAACCAGGCAGGCAG---------ACACACGT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64986240 36 + 75148670 -------------GCTCTGGTC---------------------TAGG-----------CAATCAGGCAGGCAG---------ACACACAT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2248711 36 +  4244037 -------------GCTCTGGTC---------------------TAGG-----------CAACCAGGCAGGCAG---------ACACACGT
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     4440 36 +    37134 -------------GCACTGGTT---------------------TAGG-----------CAACCAGGCGGGCAG---------ACATAGGT
i calJac3.chr5_ACFV01176693_random C 0 C 0
s saiBol1.JH378271                  1875086 36 +  3513951 -------------GCTCTGGTT---------------------CAGG-----------CAACCGGGCAGGCAG---------ACACACGT
i saiBol1.JH378271                 C 0 I 27807
s cebCap1.NW_016107543v1              31527 36 -  4077172 -------------GCACTCGTT---------------------TAGG-----------CAATCAGGCAGGCAG---------ACACACGT
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              24974 36 -    94492 -------------ACACTGGTT---------------------TAGG-----------CAGTCAGGCAGGTAG---------ACACACGT
i aotNan1.NW_018505111v1           C 0 C 0
s dasNov3.JH570468                   653784 90 -   852752 TGTTTGGCCACAGGTGCTGGTCCCACTGCAGGTGGGCTGGCAGCAGGGAGCGGTGCAACAAGAAGGCTGGCAGCACCTGGGAACACAGGT
i dasNov3.JH570468                 I 14129 C 0
e otoGar3.GL873537                 22915114  0 + 28711273 C
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=67894.000000
s hg38.chr17_JH159148v1_alt           82862 21 +    88070 GGAATGGTAGCACGTTCTCTG
s gorGor5.CYUI01015385v1            4145421 21 +  4267968 GGAATGGTAGCATGTTCTCCG
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30189657 21 - 77216781 GGGATGGTAGCAGGTTCTCCG
i rheMac8.chr16                    C 0 I 3
s macFas5.chr16                    28099944 21 - 80997621 GGGATGGTAGCAGGTTCTCCG
i macFas5.chr16                    C 0 I 3
s cerAty1.NW_012006043v1            2053179 21 -  8458610 GGGATGGTAGCAGGTTCTCCG
i cerAty1.NW_012006043v1           C 0 I 3
s chlSab2.chr16                    64986276 20 + 75148670 GGGATGG-AGCAGGTTCTCTG
i chlSab2.chr16                    C 0 I 3
s manLeu1.NW_012106252v1            2248747 20 +  4244037 GGGATGG-AGCAGGTTCTCTG
i manLeu1.NW_012106252v1           C 0 I 3
s calJac3.chr5_ACFV01176693_random     4476 21 +    37134 GGGGTGGTAGCAGGTTATCCA
i calJac3.chr5_ACFV01176693_random C 0 I 3
s cebCap1.NW_016107543v1              31563 21 -  4077172 GGGGTGGTAGCAGGTTATCCA
i cebCap1.NW_016107543v1           C 0 I 3
s aotNan1.NW_018505111v1              25010 21 -    94492 CAGGTGGTAGCAGGTTATCCA
i aotNan1.NW_018505111v1           C 0 I 3
s dasNov3.JH570468                   653874 21 -   852752 TGGCTGACAGCAGGTGGTCTG
i dasNov3.JH570468                 C 0 T 14240
e otoGar3.GL873537                 22915114  0 + 28711273 C
e saiBol1.JH378271                  1875122 27807 +  3513951 I
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=30255.000000
s hg38.chr17_JH159148v1_alt           82883 9 +    88070 GTAGACGGG
s gorGor5.CYUI01015385v1            4145442 9 +  4267968 GTAGACGGG
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30189681 9 - 77216781 GTAGACGGG
i rheMac8.chr16                    I 3 C 0
s macFas5.chr16                    28099968 9 - 80997621 GTAGACGGG
i macFas5.chr16                    I 3 C 0
s cerAty1.NW_012006043v1            2053203 9 -  8458610 GTAGACCGG
i cerAty1.NW_012006043v1           I 3 C 0
s chlSab2.chr16                    64986299 9 + 75148670 GTAGATGGG
i chlSab2.chr16                    I 3 C 0
s manLeu1.NW_012106252v1            2248770 9 +  4244037 GTAGATGGG
i manLeu1.NW_012106252v1           I 3 C 0
s calJac3.chr5_ACFV01176693_random     4500 9 +    37134 GTAGACAGG
i calJac3.chr5_ACFV01176693_random I 3 C 0
s cebCap1.NW_016107543v1              31587 9 -  4077172 GTAGACAGG
i cebCap1.NW_016107543v1           I 3 C 0
s aotNan1.NW_018505111v1              25034 9 -    94492 GTAGACAGG
i aotNan1.NW_018505111v1           I 3 C 0
s dasNov3.JH570468                   639655 6 -   852752 GTAGGA---
i dasNov3.JH570468                 T 14240 C 0
e otoGar3.GL873537                 22915114 0 + 28711273 C
e saiBol1.JH378271                  1875122 27807 +  3513951 I
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=399160.000000
s hg38.chr17_JH159148v1_alt           82892  99 +    88070 TGCACAGCAGCTAGGTTGGCAGCAGGATGTGTTGCAGCAACT--G------------------------------------------------------------------------GGGGGGTGGCAACAAGACTGGCAGCAGCTGGACACACAGCAGGTGGTCCTGCAGCA
s gorGor5.CYUI01015385v1            4145451  96 +  4267968 TGCACAGCAGCTAGGTTGGCAGCAGGACGTGTTGCAGCAACT--G------------------------------------------------------------------------GGGG---GGCAACAAGACTGGCAGCAGCTGGACACACAGCAGGTGGTCCTGCAGCA
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30189690  95 - 77216781 TGCACTGCAGCTAGGTTGGCAGCAGGATGTGTTGCAGCACCTGGG------------------------------------------------------------------------GGGG---GGCAACAAGACTGGCAGCAGCTGGACACA---CAGGTGGTCCTGCAGCA
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28099977  93 - 80997621 TGCACTGCAGCTAGGTTGGCAGCAGGATGTGTTGCAGCACCT--G------------------------------------------------------------------------GGGG---GGCAACAAGACTGGCAGCAGCTGGACACA---CAGGTGGTCCTGCAGCA
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2053212  93 -  8458610 TGCACTGCAGCTAGGTTGGCAGCAGGATGTGTTGCAGCACCT--G------------------------------------------------------------------------GGGG---GGCAACAAGACTGGCAGCAGCTGGACACA---CAGGTGGTCCTGCAGCA
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64986308  93 + 75148670 TGCACAGGAGCTAGGTTGGCAGCAGGATGTGTTGCAGCAACC--A------------------------------------------------------------------------GGGG---GGCAACAAGACTGGCAGCAGCTGGACACA---CAGGTGGTCCTGCAGCA
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2248779  93 +  4244037 TGCACTGCAGCTAGGTTGGCAGCAGGATGTGTTGCAGCAACC--A------------------------------------------------------------------------GGGG---GGCAACAAGACTGGCAGCAGCTGGACACA---CAGGTGGTCCTGCAGCA
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     4509  96 +    37134 TGTACAGCAGCTAGGTTGACAGCAGGATGTGTTGCAGCAACT--G------------------------------------------------------------------------GGAT---GGCAGCAAGACTGGCAGCAGCTGGACATGCAGCAGGTGGGTTGGCAGCA
i calJac3.chr5_ACFV01176693_random C 0 I 15
s saiBol1.JH378271                  1902929 168 +  3513951 CACACAGCAGGAGGGCTGGCAGCAGGGTGTGCTGCTGCAGCT--GGTCTGGCAGCAGCTGGTCACACAGGTGGGCTTCCAGCAGGTGGTCCTGCAGCAGGTGTTTTGACAGCAAGTTGGGC---GGCAGCAAGGCTGGCAGCAGCTGGACACACAGCAGGAGGGCTGGCAGCA
i saiBol1.JH378271                 I 27807 I 72
s cebCap1.NW_016107543v1              31596  96 -  4077172 TGTACAGCAGCTAGGTCGACAGCAGGATGTATTGCAGCAACT--G------------------------------------------------------------------------GGGC---AGCAGCAAGACTGGCAGCAGCTGGACATGCAGCAGATGGGTTGGCAGCA
i cebCap1.NW_016107543v1           C 0 I 15
s aotNan1.NW_018505111v1              25043  96 -    94492 TGTACAGCAGCTAGGTTGGCAGCAGGATGTGTTGCAGCAACT--G------------------------------------------------------------------------GGGC---AGCAGCAAGGCTGGCAGCAGCTGGACATGCGGCAGATGGGTTGGCAGCA
i aotNan1.NW_018505111v1           C 0 I 15
s otoGar3.GL873537                 22915114  71 + 28711273 -------------GGCTGGCAGCAGGGTGTGCTGCAGCAGGT--G------------------------------------------------------------------------GGCC---------------TCCAGCAGGTGGTCCTACAGCAGGTTGTCCTGCAGCA
i otoGar3.GL873537                 C 0 C 0
s dasNov3.JH570468                   639661  84 -   852752 TGGATGACAACAAGGCTGGCCACAGGTGGACATGCAGCAGGT--A------------------------------------------------------------------------GGCT---GGCAGCTAG------------TAGTCCTGCAGGAGGTGTTTCTACAGCA
i dasNov3.JH570468                 C 0 C 0
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=9959.000000
s hg38.chr17_JH159148v1_alt           82991 3 +    88070 CGT
s gorGor5.CYUI01015385v1            4145547 3 +  4267968 CGT
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30189785 3 - 77216781 CGT
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28100070 3 - 80997621 CGT
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2053305 3 -  8458610 CGT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64986401 3 + 75148670 CGT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2248872 3 +  4244037 CGT
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     4620 3 +    37134 AGT
i calJac3.chr5_ACFV01176693_random I 15 C 0
s cebCap1.NW_016107543v1              31707 3 -  4077172 AGT
i cebCap1.NW_016107543v1           I 15 C 0
s aotNan1.NW_018505111v1              25154 3 -    94492 AGT
i aotNan1.NW_018505111v1           I 15 C 0
s dasNov3.JH570468                   639745 3 -   852752 AGT
i dasNov3.JH570468                 C 0 C 0
e otoGar3.GL873537                 22915185 0 + 28711273 C
e saiBol1.JH378271                  1903097 72 +  3513951 I
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=5261.000000
s hg38.chr17_JH159148v1_alt           82994 2 +    88070 CG
s gorGor5.CYUI01015385v1            4145550 2 +  4267968 CG
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30189788 2 - 77216781 CG
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28100073 2 - 80997621 CG
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2053308 2 -  8458610 CG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64986404 2 + 75148670 TG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2248875 2 +  4244037 TG
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     4623 2 +    37134 CT
i calJac3.chr5_ACFV01176693_random C 0 C 0
s saiBol1.JH378271                  1903169 2 +  3513951 CG
i saiBol1.JH378271                 I 72 T 27632
s cebCap1.NW_016107543v1              31710 2 -  4077172 CA
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              25157 2 -    94492 CA
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22915185 1 + 28711273 -G
i otoGar3.GL873537                 C 0 I 1
s dasNov3.JH570468                   639748 2 -   852752 TG
i dasNov3.JH570468                 C 0 C 0
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=101177.000000
s hg38.chr17_JH159148v1_alt           82996 15 +    88070 TAGGCTGGCAGCAAA
s gorGor5.CYUI01015385v1            4145552 15 +  4267968 TAGGCTGGCAGCAAA
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30189790 15 - 77216781 TAGGCTGGCAGCAAG
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28100075 15 - 80997621 TAGGCTGGCAGCAAG
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2053310 15 -  8458610 TAGGCTGGCAGCAAG
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64986406 15 + 75148670 TAGGCTGGCAGCAAG
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2248877 15 +  4244037 TAGGCTGGCAGCAAG
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     4625 15 +    37134 TAGGCTGGCAGCAAG
i calJac3.chr5_ACFV01176693_random C 0 C 0
s saiBol1.JH378271                  1875539 15 +  3513951 TAGGCTGGCAGCAAG
i saiBol1.JH378271                 T 27632 I 14541
s cebCap1.NW_016107543v1              31712 15 -  4077172 TAGGCTGGCAGCAAG
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              25159 15 -    94492 CAGGCTGGCAGCAAG
i aotNan1.NW_018505111v1           C 0 C 0
s otoGar3.GL873537                 22915187 15 + 28711273 TGGGCTGGCAGCAAG
i otoGar3.GL873537                 I 1 C 0
s dasNov3.JH570468                   639750 12 -   852752 ---ACTGGCAGCAAG
i dasNov3.JH570468                 C 0 C 0
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=5277310.000000
s hg38.chr17_JH159148v1_alt           83011 1096 +    88070 GGGAGCAGCA------GTGGGTCATGGCGTCAGGGGTGGAGGGTGCACTCCTGTTCAGAGGTGAGTTTCCTAGAGTTTGATAACGTTATTCAATCTGAACCTTTTATACA-TGGTACCCCAAAGTTTGGATTAACGAGCAGAACTTGTCTTTGATA-------------CTTCTCTAGTCTTTTGGGAAATGTCCCAAGGAGGAAGTTGTCTATTCAGTGCTGTGAATTTTCTTTGAGTAATTGATTTATTTGCTTTCTTAATTGACAAATAACCAGTCAGGACTATTTTCCTGAACTGAGAAATGAATCAT--TCTCCCTACCAATTAAGCACTGATCCTCATTTTTAAAGCTGAGTACAGTATTTGGTCATCTAACAGGTCCTATGTAGCTTAGTGAGATGTCAGGACAATTGTTAGTCACCATCTGTTTTTCCTTATTGCTATTTACTTTGGAAAGTACCTCTGAAGATAGGATGATGTTGAGTCATGGTGATGAGTTAAAAACCAAGTTTAGGGAGGGCTTGTGATGCCACCTGTAatgtagaagctagtataagatttatcctcctgctataaacaataataaaagctttgta-----aatatataaaacaactgtttgcagatattggatgacaatcagctttgggttatgatccttg---aaggaag--acacatg--gggt-------aaAAAAAGAAACACATGGG---------TTTGTATGTTTTCAAAA---TtgctgctgcagcacatcctgctgccagtccacctgctgcagcagctgcagctgTTATGGCCAAATGCCAGAAGAAATAGAGTCCACATAGAG-AGCAGAGG---AGAGATAGGCGTTAAAGGGGTTTATCACAATTccttctctcagtctgaaatgtgatttttgatggttaagttttctaaagctttatccagtt-aaaattatcagtcatttcttttcgaataataatatttttgtcttggtcaggaggtattt----atctacctaaaaataaaaaaaa-tcacataaatcatctagtgagga-tttaaga--ttttttttgaccttcaagatattgatacacctggaattga--tttttttc--------ctacatgatgagtgatcagaatccaagttcatcttttccatgtaaataCTTTT
s gorGor5.CYUI01015385v1            4145567 1098 +  4267968 GGGAGCAGCA------GTGGGTCATGGCGTCAGGGGTGGAGGGTGCACTCCTGTTCAGAGGTGAGTTTCCTAGAGTTTGATAACGTTATTCAATCTGAACCTTTTATACA-TGGTACCCCAAAGTTTGGATCAATGAGCAGAACTTGTCTTTGATA-------------CTTCTCTAGTCCTTTGGGAAATGTCCCAAGGAGGAAGTTATCTATTCAGTGCTGTGAATTTTCTTTGAGTAATTGATTTATTTGCTTTCTTAATTGACAAATAATCAGTCAGGACTATTTTCCTGAACTGAGAAATGAATCAT--TCTCCCTACCAATTAAGCCCTGATCCTCATTTTTAAAGCTGAGTACAGTATTTGGTCATCTAACAGGTCCTATGTAGCTTTGTGAGATGTTAGGACCATTGTTAGTCACCATCTGTTTTTCCTTATTGCTATTTACTTAGGAAAGTACCTCtgaagataggatgatgttgagtcatgatgatgaGTTAAAAACCAAGTTTAGGGAGGGCTTGTGATGCTACCTGTAATGTAGAAGCTAGTATAAGATTTATCCTCCTGCTATAAACAGTAATAAAAGCTTTGTA-----AATATATAAAACAACTGTTTGCAGATATTGGATGACAATCAGCTTTGGGTTACGATCCTTG---AAGGAAG--ACACATG--GGGT-------AAAAAAAGAAACACATGGG---------TTTGTATGTTTTCAAAA---TTGCTGCTGCAGCACATCCTGCTGCCAGCCCACCTGCTGCAGCAGCTGCAGCTGTTATGGCCAAATGCCAGAAGAAATAGAGTCCACATAGAG-AGCAGAGG---AGAGATAGGCGTTAAAGTGGTTTATCACAATTccttctctcagtctgaaatgtgatttttgatggttaagttttctaaagcttgatccagtt-aaaattatcagtcatttcttttcgaataataatatttttgtcttggtcaggaggtattt----atctacctaaaaataaaaaaaa-tcacataaattatctagtgaggg-cttaaga--ttttttttgaccttcaagatattgatacacctggaattgatttttttttc--------atacatgatgagtgatcagaatccaagttcatcttttccatgtaaataCTTTT
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30189805 1109 - 77216781 GGGAGCAGCG------GTCGGTCATGGTGTGAGGGGTGGAGGGTGGATTTCTGTTCAGAAGTGAGTTTCCTAGAGTTTGATAACCCTATTCAATCTGAACCTTTTATACA-TGGTACGCCAAAGTTTGGATCAATGAGCAGAAGTTGTCTTTGATATTGCTTATGTGAATTTCTCTAGTTCATTGGGAAATGTCCCAGGGAGGAAGTTGTTTCTTCAGTGCTGTGAATTTTCTTTGAGTAATTGATTTATTTGCTCTCTTAATTGACAAGTAACCAGTCAGGACTATT---CTGAACTGAGAAATGAATCAT--TCTCCCTATCAATTAAGCGCTGATCCTCATTTTTAAAGCTGAGTACAGTATTTGGTCATTTAACAGGCCCTATGTAGCTTGGTGAGATGTCAGGACCATTGTTGGTCACCATCTATTTTTCCTTATTGCTATTTACTTTTGGAAGCACCTCTGAAGATAGGATGATGTTGAGTCATGGTGATGAGTT-AAAACCAAGTTTAGGGAGGGCTTCTGATGCCACCTGTAATGTAGAAGCTAGTATATGATTTATCTTCCTGTTATAAACAATAATAAAAGCTTTGTA-----AATATATAAAACAACTGTCTGAAGATATTGGATGACAATCAGCTTTGGGTTATGATCCCTG---AAGGAAG--ACACATG--GGGT-------AAAACAAGAAACATACGGG---------TTTGTGTGTTTTCAAAATTGTTGCCGCTGCAGCACACCCTGCTGCCAGCCCACCTGCTGCAGCAGCTCCAGCTGTTATGGCCAAATGCCAGAAGAAATAGAGTTCACATAGAG-AACAGAGA---AGAGATAGGCATCAAAGGGGTTTATCACAGTTccttctctcagtctgaaatgtgatttctgatggttaaattttgtaaagtttgatccagtt-aaaattatcaatcatttcttttcaaataatgatatttttgtcttggtcaggaggtgttt----atctacttaaaaataaaaaaaattcacatacattatctagtgaggg-tttaaga--ttttttttgaccttcaagctattgatacacctggaattga--tttttttt--------gtacatgatgagtgatcagaatccaagctcatcttttccatgtaaataCTTTT
i rheMac8.chr16                    C 0 I 6
s macFas5.chr16                    28100090 1109 - 80997621 GGGAGCAGCG------GTCGGTCATGGTGTGAGGGGTGGAGGGTGGATTCCTGTTCAGAAGTGAGTTTCCTAGAGTTTGATAACCCTATTCAATCTGAACCTTTTATACA-TGGTACGCCAAAGTTTGGATCAATGAGCAGAAGTTGTCTTTGATATTGCTTATGTGAATTTCTCTAGTTCATTGGGAAATGTCCCAGGGAGGAAGTTGTTTCTTCAGTGCTGTGAATTTTCTTTGAGTAATTGATTTATTTGCTCTCTTAATTGACAAGTAACCAGTCAGGACTATT---CTGAACTGAGAAATGAATCAT--TCTCCCTATCAATTAAGCGCTGATCCTCATTTTTAAAGCTGAGTACAGTATTTGGTCATTTAACAGGCCCTATGTAGCTTGGTGAGATGTCAGGACCATTGTTGGCCACCATCTATTTTTCCTTATTGCTATTTACTTTTGGAAGCACCTCTGAAGATAGGATGATGTTGAGTCATGGTGATGAGTT-AAAACCAAGTTTAGGGAGGGCTTCTGATGCCACCTGTAATGTAGAAGCTAGTATATGATTTATCTTCCTGTTATAAACAATAATAAAAGCTTTGTA-----AATATATAAAACAACTGTCTGAAGATATTGGATGACAATCAGCTTTGGGTTATGATCCCTG---AAGGAAG--ACACATG--GGGT-------AAAACAAGAAACATACGGG---------TTTGTGTGTTTTCAAAATTGTTGCCGCTGCAGCACACCCTGCTGCCAGCCCACCTGCTGCAGCAGCTCCAGCTGTTATGGCCAAATGCCAGAAGAAATAGAGTTCACATAGAG-AACAGAGA---AGAGATAGGCATCAAAGGGGTTTATCACAGTTccttctctcagtctgaaatgtgatttctgatggttaaattttgtaaagtttgatccagtt-aaaattatcaatcatttcttttcaaataatgatatttttgtcttggtcaggaggtgttt----atctacttaaaaataaaaaaaattcacatacattatctagtgaggg-tttaaga--ttttttttgaccttcaagctattgatacacctggaattga--tttttttt--------gtacatgatgagtgatcagaatccaagctcatcttttccatgtaaatactttt
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2053325 1109 -  8458610 GGGAGCAGCG------GTCGGTCATGGTGTGAGGGGTGGAGGGTGGATTCCTGTTCAGAAGTGAGTTTTCTAGAGTTTGATAACCCTATTCAATCTGAACCTTTTATACA-TGGTACGCCAAAGTTTGGATCAATGAGCAGAAGTTGTCTTTGATATTGCTTATGTGAATTTCTCTAGTTCATTGGGAAATGTCCCAGGGAGGAAGTTGTTTCTTCAGTGCTGTGAATTTTCTTTGAGTAATTGATTTATTTGCTCTCTTAATTGACAAGTAACCAGTCAGGACTATT---CTGAACTGAGAAATGAATCAT--TCTCCCTATCAATTAAGCACTGATCCTCATTTTTAAAGCTGAGTACAGTATTTGGTCATTTAACAGGCACTATGTAGCTTGGTGAGATGTCAGGACCATTGTTGGTCACCATCTATTTTTCCTTATTGCTATTTACTTTTGGAAGCACCTCTGAAGACAGGATGATGTTGAGTCATGGTGATGAGTT-AAAACCAAGTTTAGGGAGGGCTTCTGATGCCACCTGTAATGTAGAAGCTAGTATATGATTTATCTTCCTGTTATAAACAATAATAAAAGCTTTGTA-----AATATATAAAACAACTGTCTGAAGATATTGGATGACAATCAGCTTTGGGTTATGATCCTTG---AAGGAAG--ACACATG--GGGT-------AAAACAAGAAACATACGGG---------TTTGTGTGTTTTCAAAATTGTTGCCGCTGCAGCACACCCTGCTGCCAGCCCATCTGCTGCAGCAGCTCCAGCTGTTATGGCCAAATGCCAGAAGAAATAGAGTTCACATAGAG-AACAGAGA---AGAGATAGGCATCAAAGGGGTTTATCACAGTTCCTTCTCTCAGTCTGAAATGTGATTTCTGATGGTTAAATTTTGTAAAGTTTGATCCAGTT-AAAATTATCAATCATTTCTTTTCAAATAATGATATTTTTGTCTTGGTCAGGAAGTGTTT----ATCTACTTAAAAATAAAAAAAATTCACATACATTATCTAGTGAGGG-TTTGAGA--TTTTTTTTGACCTTCAAGCTATTGATACACCTGGTATTGA--TTTTTTTT--------GTACATGATGAGTGATCAGAATCCAAGCTCATCTTTTCCATGTAAATACTTTT
i cerAty1.NW_012006043v1           C 0 I 6
s chlSab2.chr16                    64986421 1102 + 75148670 GGGAGCAGCA------GTCGGTCATGGTGTGAGGGGTGGAGGGTGGATTCCTGTTCAGA-------TTCCTAGAGTTTGATAACCCTATTCAGTCTGAACCTTTTATACA-TGGTACCCCAAAATTTGGATCAATGAGCAGAAGTTGTCTTTGATG-TGTTTATGTGAATTTCTCTAGTTCATTGGGAAATGTCCCAGGGAGGAAGTTGTTTCTTCAGTGCTGTGAATTTTCTTTGAGTAATTGATTTATTTGCTCTCTTAATTGACAAGTAACCAGTCAGGACTATTCTCCTGAACTGAGAAATGAATCAT--TCTCCCTATCAATTAAGCACTGATCCTCATTTTTAAAGCTGAGT--AGTCTTTGGTCATCTAACAGGTCTTATGTAGGTTGGTGAGATGTCAGGACCATTGTTAGTCACCATCTATTTTTCCTTATTGCTATTTACTTTTGGAAGCACCTCTGAAGATAGGATGATGTTGAGTCATGGTGATGAGTT-AAAACCAAGTTTAGGGAGGGCTTCTGATGCCACCCGTAATGTAGAAGCTAGTATATGATTTATCTTCCTGTTATAAACAATAATAAAAGCTTTGTA-----AATATATAAAACAACTGTCTGAAGATATTGGATGACAATCAGCTTTGGGTGATGATCCTTG---AAGGAAG--ACACATG--GGGT-------AAAACAAGAAACATACGGG---------TTTGTGTGTTTTCAGAATTGTTGCCGCTGCAGCATACCCTGCTGCCAGCCCACCTGCTGCAGCAGCTCCAGCTGTTATGGCCAAATGCCAGAAGAAATAGAGTTCACATAGTG-AACAGAGA---AGAGATAGGCATGAAAGGGGTTTATCACAGTTccttctctcagtctgaaatgtgatttttgatggttaaattttctaaagtttgatccagtg-aaaattatcaatcatatcttttcaaataatgatatttttgtcttggtcaggagatattt----atctacttaaaaataaaaaaaattcacatacattatctagtgaggg-tttaaga--ttttttttgaccttcaaactattgatacacctggaattga--tttttttc--------gtacacaatgggtgatcagaatccaagctcatcttttccatgtaaataCTTTT
i chlSab2.chr16                    C 0 I 6
s manLeu1.NW_012106252v1            2248892 1105 +  4244037 GGGAGCAGCA------GTCGGTCATGGTGTGAGGGGTGGAGGGTGGATTCCTGTTCAGA-------TTCCTAGAGTTTGATAACCCTATTCAGTCTGAACCTTTTATACA-TGGTACCCCAAAATTTGGATCGATGAGCAGAAGTTGTCTTTGATATTGTTTATGTGAATTTCTCTAGTTCATTGGGAAATGTCCCAGGGAGGAAGTTGTTTCTTCAGTGCTGTGAATTTTCTTTGAGTAATTGATTTATTTGCTCTCTTAATTGACAAGTAACCAGTCAGGACTATTCTCCTGAACTGAGAAATGAATCAT--TCTCCCTATCAATTAAGCACTGATCCTCATTTTTAAAGCTGAGTAGAGTATTTGGTCATCTAACAGGTCTTATGTAGGTTGGTGAGATGTCAGGACCATTGTTAGTCACCATCTATTTTTCCTTATTGCTATTTACTTTTGGAAGCACCTCTGAAGATAGAATGATGTTGAGTCATGGTGATGAGTT-AAAACCAAGTTTAGGGAGGGCTTCTGATGCCACCTGTAATGTAGAAGCTAGTATATGATTTATCTTCCTGCTATAAACAATAATAAAAGCTTTGTA-----AATATATAAAACAACTGTCTGAAGATATTGGATGACAATCAGCTTTGGGTTATGATCCTTG---AAGGAAG--ACACATG--GGGT-------AAAACAAGAAACATACGGG---------TTTGTGTGTTTTCAAAATTGTTGCCGCTGCAGCACACCCTGCTGCCAGCCCACCTGCTGCAGCAGCTCCAGCTGTTATGGCCAAATGCCAGAAGAAATAGAGTTCACATAGAG-AACAGAGA---AGAGATAGGCATCAAAGGGGTTTATCACAGTTCCTTCTCTCCACCTGAAATGTGATTTCTGATGGTTAAATTTTGTAAAGTTTGATCCAGTT-AAAATTATCAATCATTTCTTTTCAAATAATGATATTTTTGTCTTGGTCAGGAGGTGTTT----ATCTACTTAAAAATAAAAAAAATTCACATACATTATCTAGTGAGGG-TTTAAGA--TTTTTTTTGACCTTCAAGCTATTGATACACCTGGTATTGA--TTTTTTTT--------GTACATGATGAGTGATCAGAATCCAAGCTCATCTTTTCCATGTAAATACTTTT
i manLeu1.NW_012106252v1           C 0 I 6
s calJac3.chr5_ACFV01176693_random     4640 1050 +    37134 GGGAGCAGCA------GTGGGTCACAGTGTCAGGGGTGGAGAGTGGGTTCCTGTTCAGAGGTGAGTTTCCTAGAGCTTGATAATTCTATTCAATTGGAACCTTTTAGACA-TGGTACCCCAAAGTTTGGACCAATGAGCAGAATTTTTCTTTGATATAATTTATGTGAATTTCTCTAGTCCATTGGGAAATGTACCAGAGAGGAAGTTGTCTCTTCAGCACTGTGTATTTTCTTTGAGTAATTTATTTGTTTGCTTTTTTAATTGAAAAATAACCA-CCAGAACTATTTTCCTGAACTGAGAAATGAATCAC--TCTCCC--TCAATTAAGCACCGATCCTCATTTTTAAAGCTGAGTACAGTATTTAGTCATCTAACAGATTCTATGTAGCTTGGTGAGATGTCAGGACCAGTGTTAGTCACCATCTATTTTTCCTTATTGCTGTTTACCTTGGGAAGCACCTCTGAAATAGGAGTGATGTTGAATCATGGTGATGACTTAAAAACCAAGTTTAGgga-ggcttctgatgccacctgcaatgtagaagctagcataagatttattttcctgctataaacaataataaaagctttgta-----aatatatgaaacaactgtttgcagatattggataacaatcagctttgggttatggttcttg---aaggaag--atacatg--gggt------aaAGAAAAGAAACACATGGG---------TTTGTATATTTTCAAAA---TTGC-----------------------------------------------------------AATGCCAGAAGAAATAGAGTCCATATAGGG-AGCAAGAAGAGAGAGAAAGGCATTGAA-GAGTTTATCACAATTGcttctctcactctgaaatgtgattttggatggttaaattttctaaagcttaatccaggt-aaaattatcaattatttcttttaaaataatactatttttgtctcaggcaggaggtattt----atctacctaaaaataaaaaatattcgtatacattatctagttagggttttaaga-tttttttttg--cttcaagctattaatacacgtggaattga--tttttttc--------acacatgataagtgatcagaatccacgttcatcttctccatgtagataCTTTT
i calJac3.chr5_ACFV01176693_random C 0 C 0
s saiBol1.JH378271                  1890095 1052 +  3513951 gggatcagCAAGGGCCGTGGGTAATGGTGTCAGGGGTGGAGAGTGGGTTCCTGTTCAGAGGTGAGTTTCCTAGAGCTTGATAACCCTATTCAGTCTGAACCTTTTAGACA-TGGTACCCCAAAGTTTGGACCAATGAGCAGAACTTGGCTGTGATATTGTTTATGTGAATTTCTCTAGTCCACTGGGAAATGTTCCAGAGAGGAAGTTGTCTCTTCAGTGCTGTGAATTTTCTTTGAGTAATTGATTTGTTTGCTTTTTTAATTGACAAATAACCA-TCAGAACTATTTTCCTGAACTGAGAAATGAATCAT--TCTCCCTATCAATTAAGCACTGATCCTCATTTTTAAAGCTGAGTACAGTATTTGGTCATCTCACAGATTCTACGTAGCTTGGTGAGATGTCAGGACCATTGTTAGTCACTAGCTATTTTTCCTTATTGCTATTTACTTTGGGAAGCACCTTTGAAATAGGAATGATGTTGAATCATGGTGATGACTTAAAAACCAAGTTTAGGGA-GGCTTCTGATGCCACCTGCAATGTAGAAGCTAGCATAAGATTTATCTTCTGGCTATAAACAATAATAAAAGCTTTGTA-----AATATATGAAACAACTGCTTGCAGATATTGGATAACAATCAGCTTTGGGTTATGGTTCTTG---AAGGAAG--ATACATG--GGGT------TAAAAAAAGAAACACATGGG---------TTTGTATATTTTCAAAA---TTTC-----------------------------------------------------------AATGACAGAAGAAATAGAGTCTATATAGCG-AGCAAGAAGAGAGAGACAGGCATTGAAGGAGTTTATCACAATTGCTTCTCTCAGTCTGAAATGCGATTTTGGATGGTTACAT---------CTTGACCCaggc-aaaattatcagttatttcttttaaaataatactatttttatcccggtcaggaggtattt----atctacctaaaaataaaaaatattcacctacattatctagttaggattttaaga-tttttttttggctttcaagctattaatacacctggaattga--tttttttc--------gtacatgataagtgatcagaatccaagttcatcttctccatgtagataATTTT
i saiBol1.JH378271                 I 14541 C 0
s cebCap1.NW_016107543v1              31727 1045 -  4077172 GGGAGCAGCA------GTGGGTAATGGTGTCAGGGGTGGAGAGTGGGTTCCTGTTCAGAGGTGAGTTTTCTAGAGCTTGATAACTCTATTCAATCTGAACGTTTTAGACA-TGGTACCCCAAAGTTTGGACCAATGAGCAGAACTTGTCTTTGATATTGTTTATGTGAATTTCTCTAGTCCATTGGGAAATGTTCCAGAGAGGAAGTTGTCTCTTCAGTGCTGTGAATTTTCTTTGAATAATTGATTTGTTTGCTTTTTTAATTGACAAATAACCA-TCAGAACTATTTTCCTGAACTGAGAAATGAATCAT--TCTCCCTATCAATTAAGCACTGATCCTCATTTTAAAAGCTAAGTACAGTATTTGGTCATCTAACAGATTCTATGTAGCTTGGTGAGATGTCAGGACCATTGTTAGTCACCATCTATTTTTCCTTATTGCTGTTTACTTTGGGAAGCACCTTTGAAATAGAAATGATGTTGAATCATGGTGATGACTTAAAAATCAAGTTTAGGGA-GGCTTCTGATGCCACCTGCAATGTAGAAGCTAGCATAAGACTTATCTTCCTGCTATAAACAATAATAAAAGCTTTGTA-----AATATATGAAACAACTGTTTGCAGATATTAGATGACAGTGAGCTTTGTGTTATGGTTCTTG---AAGGAAG--ATACATGGTGGGG------GGGGGGAAGAAACAGATGGG---------TTTGTATATTTTCAAAA---TTGC-----------------------------------------------------------AATGCCAGAAGAAATAGAGTCCGTATAGGG-AGCAAGAAGAGAGAGACAAGCATTGAAGGAGTTTATCATAATTGCTTCTCTCAGTCTGAAATGTGATTTTGGATAGTTAAATTTTCTAAAGCTTGACCCAGGT-AAAAttatcaattatttcttttaaaataatactatttttgtcttggtcaggaggtattt----atctacctaaaaataaaaaattttcacatacattatctagttagggttttaaga-tttttttttggccttcaagctattaatacacctggaattgatttttttttc--------gtacatgataagtgatcggaatccaagttcatcttttcc--------------
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              25174 1061 -    94492 GGCAACAGCA------GTGGGTAATGGTGTCAGGGGTGGAGAGTGGGTTCCTGTTCAGAGGTGAGTTTCCTAGAGTTTGATAACCCTATTCAATCTGAACCTTTTAGACA-TGGTACCCCAAAGTTTGGGCCAATGAGCAGAACTTGTCTTTGATATTGTTTATGTGAATTTCTCTAGTCCATTGGGAAATGTTCCAGAGAGGAAGTTGTCTCTTCAATACTGTGAATTTTCTTTGAGTAATTCATTTGTTTGCTTTTTTAATTGACAAATAACCA-TCAGAACTATTTGCCTGAACTGAGAAATGAATCAT--TCTCCCTATCAGTTAAGCACTGATCCTCATTTTAAAAGCTGAGTACAGTATTTGGTCATCTAACAGATTCTATGTAGCTTGCTGAGATGTCAGGACCATTGTTAGTCACCATCTATTTTTCCTTATTGCTGTTTACTTTGGGAAGCACCTCTGAAATAGGAATGATGTTGAATCATGGTGATGACTTAAAAACCAAGTTTAGgga-ggcttctgatgccacctgcaatgtagaagctggcataagatttatcttcctgctataaacaataataaaagctttgta-----aatatgtgaaacaattgtttgcagatattagataacaatcagcTTTGGGTTATGGTTCTTG---AAGGAAG--ATACATG--CGGTTAAAAAAAAAAAAAGAAACACATGTG---------TTTGTATATTTTCAAAA---TTGC-----------------------------------------------------------AATGCCAGAAGAAATAGAGTCCATATAGGG-AGCAAGAAGAGACAGACAGGCATTGAAGGAGTTTATCACAATTACTTCTCTCAGTCTGAAATGCGATtttggatggttaaattttctaaatcttgacccaggt-aaaattatcaattattccttttaagataatactatttttgtcttggtcaggaggtattt----atctacctaaaaataaaaaatattcacatacattatctagttacggttttaaga-tttttttttggccttcaagctattaatacatctggaattgt--tttttttc--------gtacatgataagtcatcagaatccaagttcatcttttccatgtagataCTTTT
i aotNan1.NW_018505111v1           C 0 I 6
s otoGar3.GL873537                 22915202 1077 + 28711273 GGGAGCAGCA------GTGGGTCATGTTATCCTGTGTGGAGGATGGGTTCTTGTTTAGAGGTGAGTTTCCCAGAATCTGCTGATGTCTTCCAATGTGTACCTTTTATACACTGGGCTTCCGAAGTTTAGACCAATCAGCAGAACTTTCCTTTGATATTGTTTATGTTAAGTTCTCTAGGCCATGGGAAAATGCCCCAAGGAGGAAGTTGTTTTTTAAGTATTAGGAATTTTCTCTG-GTAATTGATTTGTTTGTTCTTCTAATTGACAAATAACCAATCAGCACTATTTTCCTGAAATGAGATATAATTCATCATCTCCACATCAATTAAGCAATAATTCTCATTTTTAAAGTTGTATACAGCATTTGGTCATCTAACAGGTCCAGCTTAACTTGGTGAGAGGTCAGGATAATTGCCAGCCTCCTTCCATTTCCCCTGCGAGCTATTTATATTTGGAAGCACCTTTGAAAAGGGTGTGATGTTGAATCATGTGGATGAGTT-AAAACCAAGTTTAAGGA-AGCTTCTGATACGTCCCATAATGTAGAAGCTAATATAAGACTGATTTTCCTGCTATAAGCAATGATGAAAGGTGGGTATATACAGTATGCAAGACACATGTTTACAGATATTGAACCCCAATCAACTTTTGGTTATAATACTGA---GGGGAAGAAATACATG--GGGT-------GAGACCCAATTTATCTCAGAATTCTCCTCTTATGTAACTCCCAAA---CTGC-----------------------------------------------------------AATGCCAGAAGGAATAGAGTCCAAGTAGAGTGGCAAGAAGATAGAAACAGGCCTTGAATAGGTTTATTATACTTCATTCTCTAAGCTCAAAATATGATTTTTAATGATTTCATTTTGTTAAGTTTGATGTATTTGAAAATTATCAGTGATTTCTTC----AAAATAATACTATTGTCTTGCTCAGGAGATATTGTGAAGTTTATT---AAGGAAAAATTATTAATGTAAATTGTCTAGTAAGTGTTTTAAGA---ATTTTATGATCTTCAAGCTATTAATATACCTGCAATTGA--TTTTTTTTTTTTTTTGGTACATGATGAGTGATTGGAATCCAAGTTCATCTTTTCCATGTAGATACTTTT
i otoGar3.GL873537                 C 0 C 0
s dasNov3.JH570468                   639762  785 -   852752 GGGAGCAGCA------GTGGGTCATGGTGTCAGGTGTGGAAGGTGGGTTCCTGTTTAAAGGTGAGTTTTCCAGTTTCTGAGAACTCCTTCTCTCCAGGGGTTTTTATACACTGGACCCCCAATGTTGGGACCAATGAGCAGAACT---CCTTGTTGTTGTTTATGTTG-TTTCCATGGACCATGGGGAAGTGAACCAAGGAAGAAGTTATTCCTTAAGTGTTAAGAATTTTCTCAGGGCAATTGATTT-TTTG-TTTCTTAACTAATAGATAAAAA--TAAGACTGTTTTTCAGAAATGAGAGATG--CCAT--C----------ATTAAGCACTGAT----------AAACCTG---------TTGTGTC-------------------------------------ACAAGTGTCAGTCTGCATCTATTTTCTCTTGGTGGTAGTTACATTGGGAAGAATCTCTGAAGAGAGGGTGATG-------AAGATGATGAGTT-AAAACCAAGTTTAGGGA-GGCTCTAGATTCCACCTGTAATGTGGAAGCTAGTATAggatttacccacctgccgtaaataataataaaagctgggga-----aatatttaaaacaactatttttag------gacagcaatcactttcggagtacaattcttgaacaagagaa--actcatg--aggt-------gaa---------------g---------cccacattttccccagA-------------------------------------------------------------------------------------------------------------------------------------------TCTTTctct--------------------------------------------------tt-a--------------------------------------ttcctggtcaagcgctatct----ccccacctcaagatcaaaagtcattcaataaattatctaataagagtgttaaggttttgttttttatctgtaagtcattaattctcctagaattga--cttttt----------gtgcattatgtatggctggaataccattttatcttttccatgtggatac----
i dasNov3.JH570468                 C 0 C 0
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=-13159.000000
s hg38.chr17_JH159148v1_alt           84107 36 +    88070 CCATGTAAATACTGGAAACAGCTTTGATTATGATTC
s gorGor5.CYUI01015385v1            4146665 36 +  4267968 CCATGTAAATACTGGAAACAGCTTTGATTATGATTC
i gorGor5.CYUI01015385v1           C 0 C 0
s macFas5.chr16                    28101199  3 - 80997621 ---------------------------------ttc
i macFas5.chr16                    C 0 I 3
s calJac3.chr5_ACFV01176693_random     5690  6 +    37134 ---------TACCAG---------------------
i calJac3.chr5_ACFV01176693_random C 0 C 0
s saiBol1.JH378271                  1891147  6 +  3513951 ---------TACCAG---------------------
i saiBol1.JH378271                 C 0 C 0
s otoGar3.GL873537                 22916279  9 + 28711273 ------TTATTCCAG---------------------
i otoGar3.GL873537                 C 0 C 0
s dasNov3.JH570468                   640547 22 -   852752 ----------attggttccagcTTTGATCAAT----
i dasNov3.JH570468                 C 0 C 0
e aotNan1.NW_018505111v1              26235  6 -    94492 I
e cebCap1.NW_016107543v1              32772  0 -  4077172 C
e manLeu1.NW_012106252v1            2249997  6 +  4244037 I
e chlSab2.chr16                    64987523  6 + 75148670 I
e cerAty1.NW_012006043v1            2054434  6 -  8458610 I
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I
e rheMac8.chr16                    30190914  6 - 77216781 I

a score=460333.000000
s hg38.chr17_JH159148v1_alt           84143 81 +    88070 CTTTGATTATGGAACATTTTCAGCTTTATTGCTGGATatgttctcattttcatccagaatattatttatttgtgtcttctt
s gorGor5.CYUI01015385v1            4146701 81 +  4267968 CTTTGATTATGGAACATTTTCAGCTTTATTGCTGGATatgttctcattttcatccagaatattatttatttgtgtcttctt
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30190920 81 - 77216781 CTTTGATTGTGGAACGTTTTCAGCTTTATTGCTGGATatgttctcattttcatccagaatattatttatttgtgtcttctt
i rheMac8.chr16                    I 6 C 0
s macFas5.chr16                    28101205 81 - 80997621 cTTTGATTGTGGAACATTTTCAGCTTTATTGCTGGATatgttctcattttcatccagaatattatttatttgtgtcttctt
i macFas5.chr16                    I 3 C 0
s cerAty1.NW_012006043v1            2054440 81 -  8458610 CTTTGATTGTGGAACATTTTCAGCTTTATTGCTGGATatgttctcattttcatccagaatattatttatttgtgtcttctt
i cerAty1.NW_012006043v1           I 6 C 0
s chlSab2.chr16                    64987529 81 + 75148670 CTTTGATTGTGGAACATTTTCAGCTTTATTGCTGGATatgttctcattttcatccagaatattatttatttgtgtcttctt
i chlSab2.chr16                    I 6 C 0
s manLeu1.NW_012106252v1            2250003 81 +  4244037 CTTTGATTGTGGAACATTTTCAGCTTTATTGCTGGATatgttctcattttcatccagaatattatttatttgtgtcttctt
i manLeu1.NW_012106252v1           I 6 C 0
s calJac3.chr5_ACFV01176693_random     5696 81 +    37134 CTTTGACTATGGAACATTCTCAGCTTTATTGCTGGATatgttctcattttcatccagaatattatttatttgtgtcttctt
i calJac3.chr5_ACFV01176693_random C 0 C 0
s saiBol1.JH378271                  1891153 81 +  3513951 CTTTGATTATGGAACATTCTCAGCTTTATTGCTGGATatgttctcattttcatccagagtattatttatttgtgtcttctt
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              32772 73 -  4077172 --------atGGAACATTCTCAGCTTTATTGATGGATatgttctcattttcatccagggtattatttatttgtgtcttctt
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              26241 81 -    94492 CTTTGGTTATGGAACATTCTCAGCTTTATTGCTGGATatgttctcattttcatccagaatattatttatttgtgtcttctt
i aotNan1.NW_018505111v1           I 6 C 0
s otoGar3.GL873537                 22916288 81 + 28711273 CTTTTATCAGAGAACATTTTTTGCTTTATTGCTAGGTATGTCCCCATTTTCCTTCAGAATATTATATATGTTTATCTGCTT
i otoGar3.GL873537                 C 0 N 0
s dasNov3.JH570468                   640569 65 -   852752 -----------GACCATTCTATGCTTTATTCTTAATTCAGTCCTTA-TTTCATCCTTAATATTAGTTA----TGACTTCTT
i dasNov3.JH570468                 C 0 C 0
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=255790.000000
s hg38.chr17_JH159148v1_alt           84224 63 +    88070 tacatttcttgatcaatcttgtcaatggcttatcatttattggta-----ttttttttgaaaaag----aaa
s gorGor5.CYUI01015385v1            4146782 63 +  4267968 tacatttcttgatcaatcttgtcaatggcttatcatttattggta-----ttttttttgaaaaaa----aaa
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30191001 64 - 77216781 tacatttcttgatcaatcctgtcagtggcttatcatttattag--------tttttttgaaaaagaaacaaa
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28101286 64 - 80997621 tacatttcttgatcaatcctgtcagtggcttatcatttattag--------tttttttgaaaaagaaacaaa
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2054521 65 -  8458610 tacatttcttgatcaatcttgtcagtggcttatcatttattag-------ttttttttgaaaaagaaacaaa
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64987610 65 + 75148670 tacatttcttgatcaatcttgtcagtggcttatcatttattag-------ttttttttgaaaaagaaacaaa
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2250084 64 +  4244037 tacatttcttgatcaatctggtcagtggcttatcatttattag--------tttttttgaaaaagaaacaaa
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     5777 69 +    37134 tatatatcctgatcaatcttgtcagtggcttaccacttattagta---tttttttttagaaaaagaaacaaa
i calJac3.chr5_ACFV01176693_random C 0 C 0
s saiBol1.JH378271                  1891234 69 +  3513951 tatatatcttgatcaatcttgtcagtggcttgtcatttattagta---tttttttttagaaaaagaaacaaa
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              32845 72 -  4077172 tatatatcttgatcaatcttgtcagtggtttatcatttattagtattttttttttttagaaaaagaaacaaa
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              26322 72 -    94492 taaatatcttgatcaatcttgtcagtggcttatcatttattagtatttttgttttttagaaaaagaaacaaa
i aotNan1.NW_018505111v1           C 0 C 0
s dasNov3.JH570468                   640634 58 -   852752 TCTTTTTCTTGAACACCTGTGACAGTGATTGATCA---ATTTG--------TTTAATTAAAAAAGTAAA---
i dasNov3.JH570468                 C 0 N 0
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=188030.000000
s hg38.chr17_JH159148v1_alt           84287 45 +    88070 ttttggctttgttcatcttctctgtgatatcgtttttaactagtt
s gorGor5.CYUI01015385v1            4146845 45 +  4267968 ttttggctttgttcatcttctctgtgatatcgtttctaactagtt
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30191065 45 - 77216781 ttttggctttgttcatcttcactctaatatcattgttaactagtt
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28101350 45 - 80997621 ttttggctttgttcatcttcactctaatatcattgttaactagtt
i macFas5.chr16                    C 0 C 0
s cerAty1.NW_012006043v1            2054586 45 -  8458610 ttttggctttgttcatcttctctctaatatcgttgttaactagtt
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64987675 42 + 75148670 ttttggctttgt---tcttctctctaatatcgttgttaactagtt
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2250148 45 +  4244037 ttttggctttgttcatcttctctctaatatcattgttaactagtt
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     5846 45 +    37134 ttttggctttgttcatattccctgtgatatctttgttaactagct
i calJac3.chr5_ACFV01176693_random C 0 C 0
s saiBol1.JH378271                  1891303 45 +  3513951 ttttggctttgttcatattctctgtgatatctttgttagctagtt
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              32917 45 -  4077172 ttttggctttgttcatattctctgtgatatctttgttaactagtt
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              26394 45 -    94492 ttttggctttgttcatattctctgtgatatctttgttaactagtt
i aotNan1.NW_018505111v1           C 0 C 0
e macNem1.NW_012014910v1            2140493 7289 + 10377808 I

a score=73876.000000
s hg38.chr17_JH159148v1_alt           84332 15 +    88070 cattgatttacattt
s gorGor5.CYUI01015385v1            4146890 15 +  4267968 cattgatttacattt
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30191110 15 - 77216781 cattgatttACATTt
i rheMac8.chr16                    C 0 I 1698
s macFas5.chr16                    28101395 15 - 80997621 cattgatttACATTt
i macFas5.chr16                    C 0 I 2469
s macNem1.NW_012014910v1            2147782 15 + 10377808 CATTGATTTACATTT
i macNem1.NW_012014910v1           I 7289 C 0
s cerAty1.NW_012006043v1            2054631 15 -  8458610 cattgatttacattt
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64987717 15 + 75148670 cattgatttatattt
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2250193 15 +  4244037 cattgatttactttt
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     5891 15 +    37134 catcaatttccatct
i calJac3.chr5_ACFV01176693_random C 0 C 0
s saiBol1.JH378271                  1891348 15 +  3513951 catcaatttacatct
i saiBol1.JH378271                 C 0 C 0
s cebCap1.NW_016107543v1              32962 15 -  4077172 catcaatttacatct
i cebCap1.NW_016107543v1           C 0 C 0
s aotNan1.NW_018505111v1              26439 15 -    94492 catcaatttacatct
i aotNan1.NW_018505111v1           C 0 C 0

a score=13331349.000000
s hg38.chr17_JH159148v1_alt           84347 2618 +    88070 tatgctattttggttgttttcctttttcttattcacttaggtgaacacttagttcatttatttttaggttttattcttgtttaatatttaaatattaaaggctatttaaagtgtgtacattttatcaaagatca-ttttataacaccccacaagtcttgatatgtaatattttcattataattgagttacacattt---tttcCTTAACATTAGAGATTCTTCCATTTTGGTCTTCCAAGTCAGTATATCTTCTGCAGCTTATCTCACTTATTGTGTACTTTAATGACTATATGCTCTATTATTAATTTAGTATCAGATATTATGCCTGCTTGTGTCTCCTACCCCATTATACATGTTTG-TTTTTATTAATttttca-ttttgaaataatttcatactcatagaaaattgtaaacacagtacaaaggattcccatatgccttcacttggattcctcaaatgttaacattttaccatgcttctttaacattatttctatacatatatg----tgttactactgttggtttttaaaagtaagttgcagatagaatttccctttatcactaaatacCACTTTATCCCTATGTACTTCAGTGTGTGTTTCTT--GTCACAGCCCAATGATCAAAACCAAAATGTTAATGCCGTTGCAGGATA--GTCTCTGGTTGGTTCTTATTCA-------------------------TGTTGTGTGTGTG-------------------------TGTGtttttgtatttgtctatattggtaatagcttcctttatgtctttaaatgcatttattatgtttagttaaaaCCCAGTTGAAGATTTGCTGActgggaagatggagtggacatacttttccatattctttctgctaagtacaactaaaaattctggatattatatataaagcaaacacgagaggactctgaaaggtggagtgaagaaagcagccaggctagaagcctcaggacttaaggaacaataaggtggggttctctgggttttctttgtgctgcaagtaccccccagacttggagcttgagaagcctgtaactctgaaactctagtggatg----------------cacacacacacacaca--------------cacacacac-----------aca---cacacagttccaataaatgcttctctctacctaaagggtcagaaaagaggtggcttagcaagaagaaaaacatttagatggtatctgctgtgctccagaaacaactacagcttcactgccaatcactccagtaaaagccgggtgaggagatagacttccatccctgagaagctgtaatgagtttccctaacacctcccactgagttaatgtctgagaaggccaagtagggctgtgaaaccctaatctctgccagccagtaa-tgacccccgtccccaac------agac------atagacatagagtgccagtgtagaccatgtgaagggccggagttctcatctctgctcagcagtaatgatgtgctcccctaccttgattgtcagcacaggttgaataggggaactaatc-------------------------------------------taccttcatgtgacagtaatgaggtagcccctagtcc-------cttgctagaacaatgtcagagaaagccagccaaaacaaaagattacataagatcc--------------------------agagtttcataacataatacaaacagggccagatactaat--aaaaatcacttaacatacaaaaaccaggaggatatgtaactggatgaaaaaagacaatcaataaatgccaacgttgagatatcagatatgttagaattatctgacaaagagtttaaagcaagtcatgataaaaatacatcaatgaagccaggcgtggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggaggatcttgaggtcaagagattgagaccatcctggacaacatggtgaaaccctctctctaccaaaaacacaaaaattatttgggtgtggtggcggccccctgtagtcccaa----------------------------------ctactcaggaggctgaggcaggagaatcgcttgaaccagggagttggaggt------tgcagtgagccaagatcgggccactgcactccagcctggtgacaaagcaagactccgtct--aaaaaaaa-g-aaaa-gtcaatgagcaaaacataaagtgtatgtttaaaatatactttaaacaaatgaaagagtagaaagtgccacaaataaataaaagatacaatga------------------tatatgtgaattttggaact-caaaaacccaataaccaaaataaaaggctcagttgatggctcaacagcagaacggaggtaaaaagaaaagtatcagtgaactagaagatagaacattaggaaatgtccaatccaaacaacagagaaaatacactgga-aaagcctaaaaatttaacagagcttaagggacctgtgggact-aaaacaaattatctaatattcatctcaccagagtcctagaaggaaagatgaaagagggcaggggtgaaaaagtactcaaaaacaatatagttgaaaatctccccaattaac-------cgagagacataaacctacaaattcaagaaggtgaacaaatcccaaacaggataagctcaaagaaatttgtgccaacacacatagtagttaaacttctgaaaagtaaagataaagaaaaagttgtaaatgcaacaagagaaagaaaaactttatctttaggggaaaacaattaaaactacagtggatttctcattaTTTTT
s gorGor5.CYUI01015385v1            4146905 2624 +  4267968 tatgctattttggttgttttcctttttcttattcacttaggtgaacacttagttcatttatttttaggttttattcttgtttaatatttaaatattaaaggctatttaaagtgtgtacattttatcaaagatca-ttttataacaccccacaagtcttgatatgtaatattttcattataatcgagttacacattt---tttcCTTAACATTAGAGATTCTTCCATTTTGGTCTTCCAAGTCAGTATATCTTCTGCAGCTTATCTCACTTATTGTGTACTTTAATGACTATATGCTCTATTATTAGTTTAGTATCTGATATTATGCCTGCTTGTGTCTCCTACCCCATTATACATGTTTG-TTTTTATTAATttttca-ttttgaaataatttcatactcatagaaaattgtaaacacagtacaaaggattcccatatgccttcacttggattcctcaaatgttaacattttaccatgcttctttaacattatttctatacatatatg----tgttactactgttggtttttaaaagtaagttgcagatagaatttccctttatcactaaataccactttatccctatgtacttcagtgtgtatttctt--GTCACAGCCCAATGATCAAAACCAAAATGTTAACGCCGTTGCAGGATA--GTCTCTGGTTGGTTCTTATTCA-------------------------TGTTGTGTGTATG-------------------------TGTGTTTTTGTATTTGTCTATATTGGTAATAGCTTCCCTGATGTCTTTAAATGCATGTATTATGTTTAGTTAAAGCCCAGTTGAAGATTTGCTGActgggaagatggagtggacatacttttccatattctttctgctaagtacaactaaaaattctggatattgtatataaagcaaacacgagaggactctgaaaggtggagtgaagaaagcagccaggctagaagcctcaggacttaaggaacaataaggtggggttctctgggttttctttgtgctgcaagtaccc---------ggagcttgagaagcctgtaactctgaaactctagtggatgca--cacacacacacacacacacacacacaca--------------cacacacac-----------aca---cacacagttccaataaatgcttctctctacctaaagggtcagaaaagaggtggcttagcaagaagaaaaacatttagatggtatttgctgtgctccagaaacaactacagcttcactgccagtcactccagtaaaagccgggtgaggagatagacttccatccctgagaagctgtaatgagtttccctaacacctcccactgagataatgtctgagaaggccaagtagggctgtgaaaccttaatctctgccagccagtaa-tgacccccgtccccaac------agac------gtagacatacagtgccagtgtagaccatgtgaagggccggagttctcatctctgctcagcagtaatgatgtgctcccctaccttgattgtcagcacaggttgaataggggaactaatt-------------------------------------------taccttcatgtgacagtaatgaggtagcccctagtcc-------cttgctagaacaatgtcagagaaagccagccaaaacaaaagattacataagatcc--------------------------agagtttcataacataatacaaacagggccagatactaac-aaaaaatcatgtaacatacaaaaaccaggaggatatgtaactggatgaaaaaagacaatcaataaatgccaacgttgagatatcagatatgttagaattatctgacaaagagtttaaagcaagtcatgataaaaatacatcaatgatggcaggcatggtggctcgtgcctgtaatcccagcactttgggaggccgaggtgggaggatcttgagatcaagagatcgagaccatcctggacaacatggtgaaaccctctctctaccaaaaacacaaaaattatctgggtgtggtggcggccccctgtagtcccaa----------------------------------ctattcaggaggctgaggcaggagaatcgcttgaaccagggagtcggaggt------tgcagtgagccaagatcggaccactgcactccagcctggtgacaaagcaagactccgtct--aaaaaaaa-g-aaaa-gtcaatgagcaaaacataaagtgtatgtttaaaatatactttaaacaaatgaaagagtagaaagtgccacaaataaataaaagataaaacga------------------tatatgtgaattttggaact-caaaaacccaataaccaaaataaaagtctcagttgatggctcaacagccgaacggacgtaaaaagaaaagtatcagtgaactagaagatagaacattaggaaatgtccaatccaaacaacagagaaaatacactgga-aaagcctaaaaatttaacagagcttaagggacctgtgggact-aaaacaaactatctaatattcatctcaccagagtcctagaaggaaagatgaaagagggcaggggtgaaaaagtactcaaaaacaatatagttgaaaatctccccaattaac-------cgagagacataaacctacaaattcaagaaggtgaacaaatcccaaacaggataagctcaaagaaatttgtgccaacacacatagtagttaaacttctgaaaagtaaagataaagaaaaagttgtaaatgcaacgagagaaagaaacactttacctttaggggaaaacaatgaaaactacggtggatttctcattattttt
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30192823 2720 - 77216781 TATGCTATTTTGACtgtttttctttttcttattcactaagatgaactctcagttcatttattttt--gttttattcttgtttaatatttaaatattaaaggctatttaaagtgtatacattttatcaaagatcatttttataacaccccacaagtcttgatatgtaatattttcattataaatgagttacacatttttctttcctttacattatagatttttccgctttgGTCTTCCAAGTCAGTATATCTTCTGCAGTTTATCTCACTTATTGTGTACTTTAATGACTGTATGCTCCATTATTAGTTTAGTATCTGATATTGTGCTTGGTTGTGTCTCCCCCCCCATTATACATGTTTGttttttattaatttttca-ttttgaaataatttcatactcatagaaagttctaaacatagtacaaaggattcccatatgccttcacttggattcctcaaacgttaacattttaccatgcttctctaacattatttctatatatatatgtgtgtgttactactgttggtttttaaaagtaagttgcagatagaatttcccattatcactaaataccactttatccctatgtacttcagtgtgtatttctttagtcacagcctaatgatcaaaaccaaaatattaacaccaatgcaggatattgtctCTGGttggtttttattcatggtgtgtgtgt---------------gtgtgtgtgtgttgtgtgtgcgcgcgcgcgtgtgtgtgtgtgtttgtatttgtcaatattggtaatagcttcccttatgtctttaaatgcatttattatgtttagttaaaaCCCAGTTGAAGATTTGCTGActgggaagatggagtggacatacttttccacattctttctgctaagtacaactaaaaattctggatattgtatacaaagcaaacacaagaggactctgaaaggtgaagtgaagaaagcagccaggctagaagcctcaggacttaaggaacaataaggtggggttctctgggttttctttttgctgcaagtaccc--cagacttggagcttgagaagcctgcaactctgaaactctaatggatgcgcacgcacacacacacacacacacacacaca--------------cacacacac-----------aca---cacaaagttccaataaatgcttctctctacctaaagggtcagaaaagaggtggcttagcaagaagaaaaacatttagaaggtatctgctgtgctccagaaacaactatggcttcactgccagtcacaccagtaaaagccgggtggggagatagacttccatccctgagaagctgtgatgagtttccctaacacccgccactgagatagtgtccgagaaggccaagtagggctgtgaaaccttaatctctgccagccagtaa-agacccccgtccccaac------agacatagatgtagacatagagtgtcagtggagaccatgtggagggccggagctctcatctctgccccgcagtaatggtgtgctcccctaccttgcttgtcagcacaggctgaataggggaactgatctattcagcgaactaatctattcagggaactaatcttgtcacattaccttcatgtgacagtaatgaggtagcccctagtcc-------cttgctagaacaatgtcagagaaagccagccaaaatgaaagattacataagatcc--------------------------agagtttcataacataatacaaagagggccaggtactaat-aaaaaatcacttaacatcc-aaagccaggaagatatgtaactggatgaaaaaaggcaatcaataaatgtcaatgttgagataccagatatattagaattatctgacaaagagtttaaagc-agtcatgataaaaatacatcaatgaggctaggtgcggtggctcatgcctgcaatcgcagcactttgggaggctgaagtgggaggatcttgaggtcaagagattgagatcatcctggccaacatggtgaaaccctctgtctactaaaaacacaaaaattatctgggtgtgatggtgcgcacctgtagtcccag----------------------------------ctattcaggaggctgaggcaggagaatcacttgaaccag------ggaggt------tgcagtgagccaagatcgggccactgcactccagcctggtgacaaagcgagactccatct--aaaaaaaa-acaaaa-gtcaatgagcaaaacataaagtgtatgcttaaaatatactttacacaaatgaaagagtacaaattgtcacaaataaataaaagataaaacga------------------tatatgtgaattttggaact-gaaaaacccaataaccaaaataaaaggttcagttgatggctcaacagcagaatggaggtaaaaagaaaagtatcagtgaactagaagataaaacattagaaaatttccaatccaaacaacagagaaaatacactgga-aaagcctaaaaatataacagagcttaagggacctgtgggact-aaaaaaaactatctgatattcatctcaccagagtcctagaaggaaagatgaaaaagagcagggctgaaaaagtattcaaaaacaatacagttgaaaatccccccaatttag-------caagagacataaacctacaaattcaagaaggtgagcaaatcccaaacaggataaactcaaagaaatttgtgccaacacacatagtagttaaacttctgaaaagtaaagacaaggaaaaagttgtaaatgcaaccagagaaagaaacaccttacctttaggggaaaacaattaaaattat-gtggatttctcattattttt
i rheMac8.chr16                    I 1698 C 0
s macFas5.chr16                    28103879 2734 - 80997621 TATGCTATTTTGACtgtttttctttttcttattcactaagatgaactctcagttcatttattttt--gttttattcttgtttaatatttaaatattaaaggctatttaaagtgtatacattttatcaaagatcatttttataacaccccacaagtcttgatatgtaatattctcattataaacgagttacacatttttctttcctttacattatagattcttcCGCTTTGGTCTTCCAAGTCAGTATATCTTCTGCAGTTTATCTCACTTATTGTGTACTTTAATGACTGTATGCTCCATTATTAGTTTAGTATCTGATATTGTGCTTGGTTGTGTCTCCCCCCCCATTATACATGTTTGTTTTTTATTAATttttca-ttttgaaataatttcatactcatagaaagttctaaacatagtacaaaggattcccatatgccttcacttggattcctcaaacgttaacattttaccatgcttctctaacattatttctatatatatatgtgtgtgttactactgttggtttttaaaagtaagttgcagatagaatttcccattatcactaaataccactttatccctatgtacttcagtgtgtatttctttagtcacagcccaatgatcaaaaccaaaatattaacaccaatgcaggatattgtctCTGGTTGGTTTTTATTCATGgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtg-tgtgtgtgCATGCGCGCACGTGTGTGTGTGTTTGTATTTGTCAatattggtaatagcttcccttatgtctttaaatgcatttattatgtttagttaaaaCCCAGTTGAAGATTTGCTGActgggaagatggagtggacatacttttccacattctttctgctaagtacaactaaaaattctggatattatatacaaagcaaacacaagaggactctgaaaggtgaagtgaagaaagcagccaggctagaagcctcaggacttaaggaacaataaggtggggttctctgggttttctttttgctgcaagtaccc--cagacttggagcttgagaagcctgcaactctgaaactctaatggatgcgcacgcacacacacacacacacacacacaca--------------cacacacac-----------aca---cacaaagttccaataaatgcttctctctacctaaagggtcagaaaagaggtggcttagcaagaagaaaaacatttagaaggtatctgctgtgctccagaaacaactatggcttcactgccagtcacaccagtaaaagccgggtggggagatagacttccatccctgagaagctgtgatgagtttccctaacacccgccactgagatagtgtccgagaaggccaagtagggctgtgaaaccttaatctctgccagccagtaa-agacccccgtccccaac------agacatagatgtagacatagagtgtcagtggagaccatgtggagggccggagctctcatctctgccccgcagtaatggtgtgctcccctaccttgcttgtcagcacaggctgaataggggaactgATCTATTCAGCGAACTAATCTATTCAGGGAACTAATCTTGTCACATtaccttcatgtgacagtaatgaggtagcccctagtcc-------cttgctagaacaatgtcagagaaagccagccaaaatgaaagattacataagatcc--------------------------agagtttcataacgtaatacaaagagggccaggtactaat-aaaaaatcacttaacatcc-aaagccaggaagatatgtaactggatgaaaaaaggcaatcaataaatgccaatgttgagataccagatatattagaattatctgacaaagagtttaaagc-agtcatgataaaaatacatcaatgaggctaggtgcggtggctcatgcctgcaatcgcagcactttgggaggctgaagtgggacgatcttgaggtcaagagattgagatcatcctggccaacatggtgaaaccctctgtctactaaaaacacaaaaattatctgggtgtgatggtgcacacctgtagtcccag----------------------------------ctattcaggaggctgaggcaggagaatcacttgaaccag------ggaggt------tgcagtgagccaagatcgggccactgcactccagcctggtgacaaagcgagactccatct--aaaaaaaa-acaaaa-gtcaatgagcaaaacataaagtgtatgcttaaaatatactttacacaaatgaaagagtacaaattgtcacaaataaataaaagataaaacga------------------tatatgtgaattttggaact-gaaaaacccaataaccaaaataaaaggttcagttgatggctcaacagcagaatggaggtaaaaagaaaagtatcagtgaactagaagataaaacattagaaaatttccaatccaaacaacagagaaaatacactgga-aaagcctaaaaatataacagagcttaagggacctgtgggact-aaaaaaaactatctgatattcatctcaccagagtcctagaaggaaagatgaaaaagagcagggctgaaaaagtattcaaaaacaatatagttgaaaatccccccaatttag-------caagagacataaacctacaaattcaagaaggtgagcaaatcccaaacaggataaactcaaagaaatttgtgccaacacacatagtagttaaacttctgaaaagtaaagacaaggaaaaagttgtaaatgcaaccagagaaagaaacaccttacctttaggggaaaacaattaaaattat-gtggatttctcattaTTTTT
i macFas5.chr16                    I 2469 C 0
s macNem1.NW_012014910v1            2147797 2743 + 10377808 TATGCTATTTTGACTGTTTTTCTTTTTCTTATTCACTATGATGAACTCTCAGTTCATTTATTTTT--GTTTTATTCTTGTTTAATATTTAAATATTAAAGGCTATTTAAAGTGTATACATTTTATCAAAGATCATTTTTATAACACCCCACAAGTCTTGATATGTAATATTTTCATTATAAACGAGTTACACATTTTTCTTTCCTTTACATTATAGATTCTTCCGCTTTGGTCTTCCAAGTCAGTATATCTTCTGCAGTTTATCTCACTTATTGTGTACTTTAATGACTGTATGCTCCATTATTAGTTTAGTATCTGATATTGTGCTTGGTTGTGTCTCCCCCCCCATTATACATGTTTGTTTTTTATTAATttttca-ttttgaaataatttcatactcatagaaagttctaaacatagtacaaaggattcccatatgccttcacttggattcctcaaacgttaacattttaccatgcttctctaacattatttctatatatatatgtgtgtgttactactgttggtttttaaaagtaagttgcagatagaatttcccattatcactaaataccactttatccctatgtacttcagtgtgtatttctttagtcacagcccaatgatcaaaaccaaaatattaacaccaatgcaggatattgtctCTGGTTGGTTTTTATTCA-------------------------TGgtgtgtgtgtg-tgtgtgtgcgcgcgcgcgtgtgtgtgtgtgtttgtatttgtCAatattggtaatagcttcccttatgtctttaaatgcatttattatgtttagttaaaaCCCAGTTGAAGATTTGCTGActgggaagatggagtggacatacttttccacattctttctgctaagtacaactaaaaattctggatattatatacaaagcaaacacaagaggactctgaaaggtgaagtgaagaaagcagccaggctagaagcctcaggacttaaggaacaatcaggtggggttctctgggttttctttttgctgcaagtaccc--cagacttggagcttgagaagcctgcaactctgaaactctaatggacgcgcacgcacacacacacacacacacacacaca--------------cacacacac-----------aca---cacacagttccaataaatgcttctctctacctaaagggtcagaaaagaggtggcttagcaagaagaaaaacatttagaaggtatctgctgtgctccagaaacaactatggcttcactgccagtcacaccagtaaaagccgggtggggagatacacttccatccctgagaagctgtgatgagtttccctaacacccgccactgagatagtgtccgagaaggccaagtagggctgtgaaaccttaatctctgccagccagtaa-agacccccatccccaac------agacatagatgtagacatagagtgtcagtggagaccatgtggagggccggagctctcatctctgcctcgcagtaatggtgtgctcccctaccttgcttgtcagcacaggctgaataggggaactgatctattcagcgaactaatctattcagggaactaatcttgtcacattaccttcatgtgacagtaatgaggtagcccctagtcc-------cttgctagaacaatgtcagagaaagccagccaaaatgaaagattacataagatcc--------------------------agagtttcataacgtaatacaaagagggccaggtactaat-aaaaaatcacttaacattc-aaagccaggaagatatgtaactggatgaaaaaaggcaatcaataaatgccaatgttgagataccagatatattagaattatctgacaaagagtttaaagc-agtcatgataaaaatacatcaatgaggctaggtgcggtggctcatgcctgcaatcgcagcactttgggaggctgaagtgggaggatcttgaggtcaagagattgagatcatcctggccaacatggtgaaaccctctgtctactaaaaacacaaaaattatctgggtgtgatggtgcgcacctgtagtccctgttttttaaatttaaaaaacatgtacaggacttacctattcaggaggctgaggcaggagaatcacttgaaccag------ggaggt------tgcagtgagccaagatcgggccactgcactccagcctggtgacaaagcgaaagtccatct--aaaaaaaa-acaaaa-gtcaatgagcaaaacataaagtgtatgcttaaaatatactttacacaaatgaaagagtacaaattgtcacaaataaataaaagataaaacga------------------tatatgtgaattttggaact-gaaaaacccaataaccaaaataaaaggttcagttgatggctcaacagcagaatggaggtaaaaagaaaagtatcagtgaactagaagataaaacattagaaaatttccaatccaaacaacagagaaaatacactgga-aaagcctaaaaatataacagagcttaagggacctgtgggact-aaaaaaaactatctgatattcatgtcaccagagtcctagaaggaaagatgaaaaagagcagggctgaaaaagtattcaaaaacaatatagttgaaaatccccccaatttag-------caagagacataaacctacaaattcaagaaggtgagcaaatcccaaacaggataaactcaaagaaatttgtgccaacacacatagtagttaaacttctgaaaagtaaagacaaggaaaaagttgtaaatgcaaccagagaaagaaacaccttacctttaggggaaaacaattaaaattat-gtggatttctcattaTTTTT
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2054646 2695 -  8458610 tatgctattttgactgtttttctttttcttattcactaagatgaactctcagttcatttatttttaggttttattcttgtttaatatttaaatattaaaggctatttaaagtgtatacattttatcaaagatcatttttataacaccccacaagtcttgatatgtaatattttcattataaacgagttacacatttttctttcctttacattatagattcttcCGCTTTGGTCTTCCAAGTCAGTATATCTTCTGCAGTTTATCTCACTTATTGTGTACTTTAATGACTGTATGCTCCGTTATTAGTTTAGTATCTGATATTGTGCTTGGTTGTGTCTCCTCCCCCATTATACATGTTTGttttttattaatttttca-ttttgaaataatttcatactcatagaaagttgtaaacatagtacaaaggattcccatatgccttcacttggattcctcaaacgttaacattttaccatgcttctctaacattatttc--tatatatatgtgtgtgttactgctgttggtttttaaaagtaagttgcagatagaatttcccattatcactaaataccactttatccctatgtacttcagtgtgtatttctttagtcacagcccaatgatcaaaaccaaaatattaacaccaatgcaggatattgtctCTGGTTGGTTTTTATTCA-------------------------TGgtgtgtgtgtg-tgtgtgt------gcgcgtgtgtgtgtgtgtTTGTATTTGTTAATATTGGTAATAGCTTCCCTTATGTCTTTAAATGCATTTATTATGTTTAGTTAAAACCCAGTTGAAGATTTGCTGActgggaagacggagtggacatacttttccacattctttctgctaagtacaactaaaaattctggatattatatacaaagcaaacacaagaggactctgaaaggtgaagtgaagaaagcagccaggctagaagcctcaggacttaaggaacaataaggtggggttctctgggttttctttttgctgcaagtaccc--cagacttggagcttgagaagcccgcaactctgaaactctaatggatgcg----------------cacacacacacaca--------------tacacacac-----------aca---cacaaagttccaataaatgcttctctctacctaaagggtcagaaaagaggtggcttagcaagaagaaaaacatttagaaggtatctgctgtgctccagaaacaactatggcttcactgccagtcacaccagtaaaagccgggtggggagatagacttccatccctgagaagctgtgatgagtttccctaacacccgccactgagatagtgtccgagaaggccaagtagggctgtgaaaccttaatctctgccagccagtaa-agacccccgtccccaac------agacataggcatagacatagagtgtcagtggagaccatgtggagggccagagctctcatctctgccccgcagtaatgatgtgctcccctaccttgcttgtcagcacaggctgaataggggaactgatctattcagcgaactaatctattcagggaactaatcttgtcacattaccttcatgtgacagtaatgaggtagcccctagtcc-------cttgctagaacaatgtcagggaaggccagccaaaatgagagattacataagatcc--------------------------agagtttcataacataatacaaagagggccaggtactaat-aaaaaatcacttaacatcc-aaagccaggaagatatgtaactggatgaaaaaaggcaatcaataaatgccaatgttgagataccagatatattagaattatctgacaaagagtttaaagt-agtcatgataaaaatacatcaatgaggccaggtgcggtggctcactcctgcaattgcagcactttgggaggctgaagtgggaggatcttgaggtcaagagattgagatcatcctggccaacatggtgaaaccctctgtctactaaaaacacaaaaattatctgggtgtgatggtgcgcacctgtagtcccag----------------------------------ctattcaggaggctgaggcaggagaatcacttgaaccag------ggaggtggaggctgcagtgagccaagatcgggccactgcactccagcctggtgacaaagcgagactccatctaaaaaaaaaa-acaaaa-gtcaatgagcaaaacataaagtgtatgcttaaaatatactttacacaaatgaaagagtacaaattgtcacaaataaataaaagataaaacga------------------tatatgtgaattttggaact-gaaaaacccaataaccaaaataaaaggttcagttgatggctcaacagcagaatggaggtaaaaagaaaagtatcagtgaactagaagataaaacattagaaaatttccaatccaaacaacagagaaaatacactgga-aaagcctaaaaatataacagagcttaagggacctgtgggact-aaaaaaaactatctaatattcatctcaccagagtcctagaaggaaagatgaaagagagcagggctgaaaaagtattcaaaaacaatatagttgaaaatctccccaatttag-------caagagacataaacctacaaattcaagaaggtgagcaaatcccatacaggataaactcaaagaaatttgtgccaacacacatagtagttaaacttctgaaaagtaaagacaaggaaaaagttgtaaatgcaaccagagaaagaaacaccttacctttaggggaaaacaattaaaattat-gtggatttctcattaTTTTT
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64987732 2718 + 75148670 tatgctattttgactgtttttctttttcttattcactaagatgaactctcagttcatttatttttaggttttattcttgtttaatatttacatattaaaggctatttaaagtgtatacattttatcaaagatcatttttataacaccccacaagtcttgatatgtaatattttcattataaacgagttacacatttttctttcctttacattatagattcttctGCTTTGGTCTTCCAAGTCAGTATATCTTCTGCAGTTTATCTCACTTATTGTGTACTTTAATGACTGTATGCTCTATTGTTAGTTTAGTATCTGATATTGTGCTTGGTTGTGTCTCCTCCCCCATTATACATGTTTG-TTTTTATTACTttttca-ttttgaaataatttcatactcatagaaagttgtaaacatagtacaaaggattcccatatgccttcacttggattcctcaaacgttaacattttaccatgcttctttaacattatttctatatatatgtgtgtgtgttactactgttggtttttaaaagtaagttgcagatagaatctcccattatcactaaataccactttatccctatgtacttcagtgtgtatttctttagtcacagcccaatgatcaaaaccaaaatattaacaccaatgcaggatattgtctCTGGTTGGTTTTTATTCATGgtgtgt-------------------gtgtgtgtgtg-tgtgtgtgCGCGC--GCGCGTGTGTGTGTGTTTGTATTTGTCAatattggtaatagcttcccttatgtctttaaatgcatttattatgtttagttaaaaCCCAGTTGAAGATTTGCTGActgggaagatggagtggacatacttttccacattctttctgctaagtacaactaaaaattctggatattatatacaaagcaaacacaagaggactctgaaagatgaagtgaagaaagcagccagtctagaagcgtcaggacttaagtaacaataaggtggggttctctgggttttctttttgctgcaagtaccc--cagacctggagcttgagaagcctgcaactctgaaacactaatggatgtt--------------cccgcgcacgcgcgtg--------------caccccccctcccccccccgaca---cacaaacttccaataaatgcttctctctacctaaagggtcagaaaagaggtggcttagcaagaagaaaaacatttagaaggtatctgctgtgctccagaaacaactatggcttcactgccagtcacaccagtaaaagccgggtggggagattgacttccatccctgagaagctgtgatgagttcccctaacacccgccactgagatagtgtccgagaaggccaagtagggctgtgaaaccttaatctctgccagccagtaa-agacccccgtccccagcagccatagacatagacatagacatagagtgtcagtggagaccatgtggagggccggagctctcatctctgccccgcagtaatggcgtgctcccctaccttgcttgtcagcacaggctgaataggggaactgATCTATTCAGCGAACTAATCTATTCAGGGAACTAATCTTGTCACATtaccttcatgtgacagtaatgaggtagcccctagtcc-------cttgctagaacaatgtcagggaaggccagccaaaatgacagattacataagatcc--------------------------agagtttcataacataatacaaagagggccaggtactaat-aaaaaatcacttaacatcc-aaagccaggaagatatgtaactggatgaaaaaaggcaatcaataaatgccaatgttgagataccagatatattagaattatctgacaaagagtttaaagc-agtcatgataaaaatacatcaatgaggccgggtgtggtggctcacgcctgcaatcggagcactttgggaggctgaggtgggaggatcttgaggtcaagagattgagatcatcctggccaacatggtgaaaccctctctctactaaaaacacaaaaattttctgggtgtgatggtgcgcacctgtagtcccag----------------------------------ctattcaggaggctgaggcaggagaatcacttgaaccag------ggaggt------tgcagtgagccaagatcgggccactgcactccagcctggtgacaaagtaagactccatct--aaaaaaaa-acaaaa-gtcaatgagcaaaacataaagtgtacgcttaaaatgtactttacacaaatgaaagagtacaaattgtcacaaataaataaaagataaaacga------------------tatatgtgaattttggaact-gaaaaacccaataaccaaaataaaaggttcagttgatggctcaacagcagaatggaggtaaaacgaaaagtatcagtgaactagaagatagaacattagaaaatttccaatccaaacaacagagaaaatacactgga-aaagcctaaaaatataacagagtttaagggacctgtggaactaaaaaaaaactatctaatattcatctcacccgagtcctagaaggaaagatgaaagagggcaggactgaaaaagcattcaaaaacaatatagttgaaaatccccccaatttag-------caagagacgtaaacctacaaattcaagaaggtgagcaaatcccaaacaggataaactcaaagaaatttgtgccaacacacataatagttaaacttctgaaaagtaaagacaaggaaaaagttgtaaatgcaaccagagaaagaaacaccttacttttaggggaaaacaattaaaattat-gtggatttctcattaTTTTT
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2250208 2700 +  4244037 tatgctattttgactgttt---tttttcttattcactaagatgaactctcagttcatttatttttaggttttattcttgtttaatatttaaatattaaaggctatttaaagtgtatgcattttatcaaagatcatttttataacaccccacaagtcttgataggtaatattttcattatAAACGAGTTACACATTTTTCTTTCCTTTACGTTATAGATTCTTCCGCTTTGGTCTTCCAAGTCAGTGTATCTTCTGCAGTTTATCTCACTTACTGTGCACTTTAATGACTGTATGCTCCATTATTAGTTTAGTATCTGATATTGTGCTTGGTTGTGTCTCCTCCCCCATTATACGTGTTTGTTTTTTATTAATttttcc-ttttgaaataatctcatactcatagaaagttctaaatatagtacaaaggattcccatatgccttcacttgaattcctcaaacgttaacattttaccatgcttctctaacattatttctatatatatatgtgtatgttactgctgttggtttttaaaagtaagttgcagatagaatttcccattatcactaaataccactttatccctatgtacttcagtgtgtatttctttagtcacagcccaatgatcaaaaccaaaatattaacaccaatgcaggatattgtctCTGGTTGGTTTTTATTCATGgtgtgt-------------------gtgtgtgtgtg-tgtgtgtgcgcgcgtgcgtgtgtgtgtgtgtTTGTATTTGTCAATATTGGTAATAGCTTCCCTTATGTCTTTAAATGCATTTATTATGTTTAGTTAAAACCCAGTTGAAGATTTGCTGActgggaagatggagtggacatacttttccacattctttctgctaagtacaactaaaaattctggatattatacacaaagcaaacacaagaggactctgaaaggtgaagtgaagaaagcaaccaggctagaagcctcaggacttaaggaacaataaggtggggttccctgggttttctttttgctgcaagtaccc--cagacttggagcttgagaagcctgcaactctgaaactctaatggatgcg--------------cacacacacacacata--------------cacacacac-----------aca---cacaaagttctaataaatgcttctctctacctaaagggtcagaaaagaggtggcttagcaagaagaaaaacatttagaaggtatctgctgtgctccagaaacaactatggcttcactgccagtcacaccagtaaaagccgggtggggagatagacttccatccctgagaagctgtgatgagtttccctaacacccgccactgagatagtgtccgagaaggccaagtagggctgtgaaaccttaatctctgccagccagtaa-agacccccgtccccaac------agacatagacatagacatagagtgtcagtggagaccatgtggagggccggagctctcatctctgccccgcagtaatgatgtgctcccctaccttgcttgtcagcacaggctgaataggggaactgatctattcagcgaactaatctattcagggaactaatcttgtcacattaccttcatgtgacagtaatgaggtagcccctagtcg-------cttgctagaacaatgtcagggaaggccagccaaaatgaaagattacataagatcc--------------------------agagtttcataacataatacaaagagggccaggtactaat-aaaaaatcacttaacatcc-aaagccaggaagatatgtaactggatgaaaaaaggcaatcaataaatgccaatgttgagataccagatatattagaattatctgacaaagagtttaaagt-agtcatgataaaaatacatcaatgaggccaggtgcggtggctcactcctgcaatcgcagcactttgggaggctgaagtgggaggatcttgaggtcaagagattgagatcatcctggccaacatggtgaaaccctctgtctactaaaaacacaaaaattatctgggtgtgatggtgcgcacctgtagtcccag----------------------------------ctattcaggaggctgaggcaggagaatcacttgaaccag------ggaggt------tgcagtgagccaagatcgggccactgcactccagcctggtgacaaagcgagactccatct--aaaaaaaa-ccaaaa-gtcaatgagcaaaacataaagtgtatgcttaaaatatactttacacaaatgaaagagtacaaattgttacaaataaataaaagataaaacga------------------tatatgtgaattttggaact-gaaaaacccaataaccaaaataaaaggttcagttgatggctcaacagcagaatggaggtaaaaagaaaagtatcagtgaactagaagataaaacattagaaaatttccaatccaaacaacagagaaaatacactgga-aaagcctaaaaatataacagagcttaagggacctgtgggact-aaaaaaaactatctaatattcatctcaccagagtcctagaaggaaagatgaaagagagcagggctgaaaaagtattcaaaaacaatatagttgaaaatctccccaatttag-------caagagacataaacctacaaattcaagaaggtgagcaaatcccatacaggataaactcaaagaaatttgtgccaacacacatagtagttaaacttctgaaaagtaaagacaaggaaaaagttgtaaatgcaaccagagaaagaaacaccttacctttaggggaaaacaattaaaattat-gtggatttctcattaTTTTT
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     5906 2603 +    37134 tatgct-ttttggctgtttttctttttcttattcactaagatgtacacttagttcatttattgttaggttttattcttgtttaatatttaaatattaaaggctacttaaagtgtatacattttatcacagaccatttttatagcaccccacaagtcttgatatgtaatattttcattataatgcagtgacactttt---tttcctttacattgtagactcttcCATTTT-GTCTTCCACGTCAGTATATCTTCTGTAGTTTATCTCATGTATTGTGTACTTCAATGACTATATGCTCTGTTATTACTTTCGTATCTAATACTATGCTTGGTTGTGTCTCCTTCCCCATTATACATGTTTA-TTTTTATTAATttttcatttttgaaataatttcatactcttagaaagttgtaaacataatacaaaggattcccatatgccttcac-tggattcctcaaatgttaacattttaccatgcttctttaacatggtttctatgcatatatg----tgttactactgttggtttttaagagtaagttgcagttagaatttccttttatcactcatttccactttatccctatgtacttcagtgtgtgcttcttTGGTCACAGCCCAATGATTAAAACCAAAATCTTAACACCGGTGCAGGATATTGTCTCTGATTGGTTCTTACTCA-------------------------TGTTGTG-----T-T-----------------------TTTTCCTCTGTATTTGTCTATATTGGCAACAGCTTCC------TC--AAAATGTATTTATTATGATCCGTTAAAACCCAGTTGAAGATTTGCTGActgagaagttggagtagacatacttttccacattcttcctccaaagcacaactacaaattctggatattatatataaagcatacacaagagaactccgaaaggtggagtgaagaaagcagccaggctagaaggctcaagacttaaggaacaataag---------tctgggttttctttttgctgcaagtactc--tggacttggagcctgagaaacctgcaactctgaaactctaatggatgca----cacaca----------------------------------cacacacac-----------aca---cacacagttccaataaacacctctttctacctaaagggtcagaaaagaggtggcttagcaagaagaaaaa-atttagatgctaattgctctgctccagaagcaactatggcttcactgccaatcaccccagtaaaagccaggtggggt-ctagacttccgtccctgaaaagctgtaatgagtttccctaacactc-ccactgggatagtgaaagagaaggccaagtagggctgtgaaactttaatctctgccagccagtaattaaaccccaaccccaac------agac------atagacatagagcgtcagtggagaacatgtggagggccagagctctcatctctgctcagcagtaatgaggtgcttccccaccttggttgccagcacagggtgaataggggaactgatc-------------------------------------------tactttcatgtgacagtaatgatgcagcccctattccccattctcttgctagaacaatgt-------agccagaaaaaatgaaggattgcataaaatcc--------------------------agagtttcataacataatacaaacaaggccaggtattaat-aaaaaatcacttaacatat-aaaaaccaggagatatgtaacttgatg-aaaaagacaatcaataaatgccagtgttgagatgccagatatgttacaattatctgacaaagattttaaagc-aatcatgataaaaatacatcaatgaggccagacatggtggctcacacctgtaatcccagcactttgggaggctgagatgggtggatcatgaggtcaagagataaagactatcctggccaacatggtgaaacccaatctctactaaaaatacaaaaattagct-----tggtggcacatgcctgtaatcccag----------------------------------caactctggaggctgaggcaagagaatcacttgaacccgggaggtggaggt------tgcagtgagccgagatcacgctactgcactccaggctggtgacagagaaagactttgtct--aaaaaaaa-acaaaaggtcaatgaacaaaccataaagtgtatgtttaaaatatactttaaacaaatgaaagagtagaaagtatcaaaaagaaataaaagatataataaataactatattgaatatctatatgtaaattttggaactaaaaaaatgcaataaccaaaataaaaatctcagttgatggcgcaacagcagaatggggataaaaagaagagtatcagtgaactagaaaatagaacattagaaaatgtccaacccaaacaacagagaaaatataccaaagaaaaattaaaaatttaacagagcttaagggacctgtgggact-aaaacaaaagatgtaatattcatctccccagaatcctagaaggaaagatggaaaagggcaggtctgaaaaagtattcaaaagcaacacagttggaaatctccccaatttatgtctccccaagagacataaacctacaaattcaacaaggtaagaaaatcccaaataggataagctcaaagaattttgtgcaaacacacatagtagtt-aacttatgaaaagtaaagat------aaagttgtaaatgcactcagagaaagaaacaccatacctttagggggaaacaattaaaattgcagtggatttctcatgattttt
i calJac3.chr5_ACFV01176693_random C 0 C 0
s saiBol1.JH378271                  1891363 2640 +  3513951 tatgct-ttttggctgtttttctttttcctattcactaagatgcacacttagttcatttattgttaggttttattcttgtttaatatttaaatattaaaggctacttaaaatgtatacattttatcacagaccatttttatagcaccccacaagtcttgatacgtaatattttcattctaatccagtgacactttt---tttcctttacattgtggtttcttcCCCTTTGGTCTTCCCAGTCAGTGTATCCCCTGTAGTTTATCTCACTTATTGTGTACTTCAATGACTATATGCTCTGTTATTACTTTTGTGTCTAATATTATGCTTGGTTGTGTCT-CTTCCCCATCATACATGTTTA-TTTTTATTAATtttttatttttgaaataatttcatactcttagaaagttgtcaacatagtacaaaggattcccatatgccttcac-tggattcctcaaatattaacattttaccatgattctttaacgttatttctatacatgtagt----tgttactactgttggtttttcagagtaagttgcagttagaatttccttttatcactaaattccacttcatccctatgtacttcagtgtgtgtttctttggtcacagcccaatgattaaaaccaaaatcttaacaccgatgcaggatattatctCTGGTTGGTTCTTACTCA-------------------------TGTTGTATGTTTT-T-----------------------TTTTTCTCTGTATTTGTCTATATTGGTAATAGCTTCCCTTATGTC--AAAATGTGTTTATTATGTTTAGTTAAAACCCAGTTGAAGATTTGCTGAccgggaagatggagtgggtatacttttccacattcttcctcctaagtacaactacaaattctggatattatacataaagcaaacacaagaggactctgaaaggtggagtgaagaaagcagccaagctagaaagctcaggacttaaggaacaagaag---------tctgggttttctttttgctgcaagtattc--tagacatggagcttgagaagcctgcaactctgaaactctaatggatgca----cacacacaagcacacacacacacacatgcacacgcacacgcacacacac-----------aca---cacacagttccaataaacacctctctctacctaaagggtcagaaaagaggtggcttagcaagaagaaaaa-atttagatgctaactgctgtgctccggaagcaactatggcttcactgccaatcaccccagtaaaagtccggtgggaa-ctaggcttcggtccctgagaagctgtaattagtttccctaacactc-ccactgggatagtgaaagagaaggccaagtaaggctgtgaaactttaatgtgtgccagccagtaa-tgacccccacccccaac------agac--------agacacagagtgtccttggagaccatgtggatggccagagctctcatctctgctcagcagtaatgagctgcttccccaccttggttgccggcacagagtgaatcggggaactgatc-------------------------------------------cactttcatgtgacagtaatgaggcagcctctatttcccattctcttgctagaacaatgt-------gggaagtcaaaacaaagg-ttacgtaaaatcc--------------------------agagtttcataacataatacaaatagggccaggtactaataaaaaaatcacttaacatat-aaaaaccaggagatacgtaactggatg-aaaaagacaatcaataaatgccaatgttgagatgccagatatgttacaattatctgacaaagattttaaagc-aatcttgataaaaataaatcaatgaagccaggcatggtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggataatgaggtcaagagataaagactatcctgaccaacatggtgaaacctcgcctctactaaaaatacaaaaattaacc-agtgtggtggcacacatctgtaatcccag----------------------------------ctactctggaggctgaggcaggagaatcgcttgaacccaggacgaggaggt------tgctgtgagccgagatcacgccactgcactccaggctggtgacagagcaagacttcatct--aaaaaaaa-aaaaaaagtcaatgaacacaacataaagtgtatgtttaaaatatacttttaacaaatgaaagagtagaaaccatcaaaaagaaataaaa-atataataaataactatattgattatgtgtatgtaaattttagaact-aaaaaatgcgataactgaaataaaaatctcagttgatggctcaacagcagaatggagttaaaaagaaaagtatcagtgaactagaaaatagaacattagaaaatgtccaacccaaacaactgagaaaatatactgaagaaaacttaaaaatttaacagagcttaagggacctgtgggact-aaaacaaaagatgttatattcgcctccccagagtcctagaaggaaagatgaaaaagggcagggctgaaaaagtattcaaaagaaacatagttgaaaatctcccccatttag-------caagagacataaacctacaaattcaacaaggtgagaaaatcccaaataggaaaagctcaaagaaatttgtgcaaacacacataatagtt-aacttatgaaaagtaaagat------aaagttgtaaatacagtcagagaaagaaacaccttatctttagaggaaaacaattaaaattgcagtggatttcttttttttctt
i saiBol1.JH378271                 C 0 N 0
s cebCap1.NW_016107543v1              32977 2643 -  4077172 tatgtt-ttttggctgtttttctttttcttattcactaagatgtacacttagttcatttattgttaggttttattcttgtttaatatttaaatattaaaggctacttaaagtgtatacattttatcacagaccattttcatagcaccccacaagtcttgatatgtaatattttcattataatccagtgacactttt---tttcctttacattgtagattcttcCGTTTTGGTCTTCCAAGTCAGTATATCCTCTGTAATTTATCTCACTTATTGTGTACTTTAATGACTATATGCTCTGTTATTACTTTTGTATCTAATATTATGCTTGGTTGTGTCT-CCTCCCCATCATACATGTTTA-TTTTTATTAATttttcatttttgaaataatttcatactcttagaaagttgtaaacatagtacaaaggattcccatatgccttcac-tagattcctcaaatgttaacattttaccatgcctctttaacattatttctatacatataag----cgttactactgttggtttttaagagtaagttgcagttagaatttccttttatcactaaattccgctttatccctacgtacttcagtgtgtgtttcttTGGTCACAGCCCAATGATTAAAACCAAAATCTTAACACTCATGCAGGATATTGTCTCTGGTTGGTTCTTACTCA-------------------------GGTTGTG--TTTT-T-----------------------TTTTTCTCTGTATTTGTCTATATTGATAATAGCTTCCCTTATGTC--AAAATGTATTTATTATGTTTAGTTAAAACCCAGTTGAAGATTTGCAGAccgggaagatggagtgggtatacttttccacattcttcctcctaagtacaactacaaattctggatattatacataaagcaaacacaagaggactctgaaaggtggagtgaagaaagaagccaggctagaaagctcagggcttaaggaacaagaag---------tctgggttttctttttgctgcaagtactc--tagacatggagcctgagaagcctgcaactctgaaactctaatggacgcg----cgcgcgcacacacacacacacacaca--------------cacacacac-----------aca---cacacagttccaataaacacctatctctacctaaagggtcagaaaagaggtagcttggcaagaagaaaaa-atttagacgctaactgctctgctccggaagcaactatggcttcactgccaatcatcccagtaaaagccgggtgggga-ctagacttccttccctgagaagctgtaatgagtttccccaacactc-ccactgggatagtgaaagagaaggccaagtagggctgtgaaactttaatctctgccagtcagtaa-tgacccccatccccaaa------acac------atagacgcagagtgtcagtggagaccatgtggagggccagagctctcatctctgctcagcagtaatgaggtgcttccccaccttgcttgccagaacagggggaatcggggaactgatc-------------------------------------------tactttcatgtgacagtaatgaggcagcctctattccccattctctcgctagaacaatgt-------agccagccaaaacaaaagattacataaaatccagccaaaacaaaagattacataaaaaagagtttcataacataatacaaatagggacaggtactaat-aaaaaatcacttaacacat-aaaaaccaggagatatgtaactggatg-aaaaagacaatc-ataaatgccaatgttgagatgccagatatgttacaattatctgacaaatattttaaagc-aatcatgataaaaataaatcaataaggccaggcatggtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcatgaggtcaagagataaagactatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagcc-agtgtggtggcacacgcctgtaatcccag----------------------------------ctactctggaggctgaggcaggagaatcgcttcaacccaggaggtggaggt------tgcagtgagccgagatcacgccactgcactccaggctggcgacagagcaagacttcgtct--aaaaaaaa--------gtcaatgaacaaaacatagagtgtatgtttaaaatatactttaaa-aaatgaaagagtagaaagtatcaaaaagaaataaaagatataataaataactatattgaatatctatatgtaaattttggaact-aaaaaatgcgataaccaaaataaaaacctcagttgatggctcaatagcagaatggagat-aaaagaaaagtatcagtgaactagaaaataaaacattagaaaatgtccaacccaaacaacagagaaaatatactgaagaaaaattaaaaatttaacagagcttaagggacctgtgggact-aaaataaaagatgtaatattcatctccccagagtcccagaaggaaagctgaaaaagggcagggctgaaaaagtgttcaaaagcaacatagttgaaaatctccccaatttag-------caagagacataaacctacaaattcaacaaggtaagaaaatcccaaataggataagctcaaagaaatttgtgcaaacacacatagtagtt-aacttatgaaaagtaaagat------aaagttgtaaatgcaatcagagaaagaaacaccttacctttagaggaaaacaattaaaattgcagtggatttttcattattttt
i cebCap1.NW_016107543v1           C 0 N 0
s aotNan1.NW_018505111v1              26454 2604 -    94492 tatgct-ttttggctgtttttctttttcttattcactaagatgtacacttagttcatttattgttaggttttattcttgtttaatatttaaatattaaaggctacttaaagtgtatacattttatcacagaccatttttatagcaccccacaagtcttgatatgtaatattttcattataatccagtgacagtttt---tttcccttacattgtagattcttctGTTTTGGTCTTCCAAGTCAGTATATCCTCTGTAGTTTACCCCACTCATTGTGTACTTTAATGACTATGTGCTCTGTTATTACTTTCGTATCTAATATTATGCTTGGTTGTGTCT-CCTCCCCATCATACCTGTTTA-TTTTTATTAATttttcatttttgaaataatttcacgcacttagaaagttgtaaacatagtacaaaggattcccatatgccttcac-tggattcctcaagtgttaacattttaccatgcttctttaacattatttctacacatatagg----tgttactactgttggtttttaagagtaagttgcagctagaatttccttttatcactaaattccattttatccctatgtacttcagtgtgtgtttctttggtcacagcccaatgattaaaactaaaatcttaacaccgatgcaggatactgtCTC--GTTGGTTCTTACTCA-------------------------TGTTGTG---TTT-T-----------------------TTTTTCTCTGTATTTGTCTACATTGGTAATAGCTTCCCTTTTGTC--AAAATGTATTTATTATGTTTCGTTAAAACCCAGTTGAAGATTTGCTGAccgggaagatggagtggatatacgtttccacattcttcctcctaagtccaactacaaattctggatattatacataaagcaaacacaagagaact--gaaaggtggagtgaagaaagcagccaggctagaaagatcaggacttaaggaacaagaag---------tctgggttttctttttgctgcaagtactc--tagacatggagcctgagaagcctgcaactctgaaactctaatggatgca----cacacacacaca----------------------------cacacacac-----------acagttcacactgttctaataaaaacctctctctacctaaagggtcagaaaagaggtggcttagcaagaagaaaaa-atttaaatgctaactgctctgctccagaagcaactatggcttcactgccaatcaccccagtaaaaaccaggtgggga-ctagacttccgtccctgagaagctgtaatgagtttccctaacactc-ccactgggatagtgaaagagaaggccaagtagggctgtgaaactttaatctctgccagccagtaa-tgacctccatccacaac------agac------atagacacagagtgtcagtggagaccatgtggagggccagagctctcagctctgctcagcagtaacgaggtgcttccccaccttga-agccagcacagggtgaacaggggaactgatc-------------------------------------------tactttcatgtgacagtaatgaggcagcctctattccccattctcttgctagaacaatgt-------agccagccaaaacaaaagattacataaaatcc--------------------------agagtttcataacataatacaaatagggccaggtactaat-aaaaaatcacttaacatat-aaaaaccaggagatatgtaactggatg-aaaaagacaatcagtaaatgccaatgttgagatgccagatatgttacaattatctgacaaagattttaaagc-aatcatgataaaaataaatcaatgagtctaggcacggtggctcacacctgtaatcccagcactttgggaggctgaggcaggtggatcatgaggtcaagagataaagactatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattggcc-agcgtggtggcacacgcctgtaatcccag----------------------------------ctactctggaggctgaggcaggagaatcgcttgaacccgggaggtggaggt------tgcagtgggccgagatcgcaccattgcactcaaggctggtgacagggcaagacttcgtct--aaaaaaaaaaaaaaaagtcaataaacaaaacatagagtgtatgtttaaaatatactttaaacaaatgaaagagtagaaagtatcaaaaagaaataaaagatataataaataactatattgaatatccatatgtaaattttggaact-aaaaaatgcgataaccaaaataaaaatctcagttgatggctcaacagtagaata------aaaagaaaagtatcagtgaactagcaaatagaacattagaaaatgtccga-ccaaacaacagagaaaatatactgaagaaaagttaaaaatttaacagagcttaagggacctgtgggact-aaaacgaacgatgtaatattcatctccccagagtcctagaaggaaagatgaaaaagggcagggctgaaaaagtattcaaaagcaacatagttgaaaatctccccaatttag-------caagagacataaacctacaaattcaacaaggtgagaaaatcccaaataggataagctcaaagagatttgtgcaaacacacatagtagtt-aacttatgaaaagtaaagat------aaagttgtaaatgcagtcaaagaaagaaacaccttacctttaggggaaaacaattaaaattgcagtggatttctcatttttttt
i aotNan1.NW_018505111v1           C 0 I 1

a score=72259.000000
s hg38.chr17_JH159148v1_alt           86965 22 +    88070 CAAGTGCTGACAGAAAAGAACT
s gorGor5.CYUI01015385v1            4149529 22 +  4267968 caagtgctgatagaaaagaact
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30195543 22 - 77216781 caagtcctgatagaaaagaact
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28106613 22 - 80997621 CAAGTCCtgatagaaaagaact
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2150540 22 + 10377808 CAAGTCCtgatagaaaagaact
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2057341 22 -  8458610 CAAGTCCtgatagaaaagaact
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64990450 22 + 75148670 CAAGTCCtgatagaaaagaact
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2252908 22 +  4244037 CAAGTCCtgatagaaaagaact
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     8509 19 +    37134 taagtgctaaaagaaaaga---
i calJac3.chr5_ACFV01176693_random C 0 C 0
s aotNan1.NW_018505111v1              29059 22 -    94492 taagtgttgaaagaaaagaact
i aotNan1.NW_018505111v1           I 1 N 0

a score=50476.000000
s hg38.chr17_JH159148v1_alt           86987 17 +    88070 AAAATGAGTagaaaatc
s gorGor5.CYUI01015385v1            4149551 17 +  4267968 aaaatgagtagaaaatc
i gorGor5.CYUI01015385v1           C 0 C 0
s rheMac8.chr16                    30195565 17 - 77216781 aaaatgagtagaaaatc
i rheMac8.chr16                    C 0 C 0
s macFas5.chr16                    28106635 17 - 80997621 aaaatgagtagaaaatc
i macFas5.chr16                    C 0 C 0
s macNem1.NW_012014910v1            2150562 17 + 10377808 aaaatgagtagaaaatc
i macNem1.NW_012014910v1           C 0 C 0
s cerAty1.NW_012006043v1            2057363 17 -  8458610 aaaatgagtagaaaatc
i cerAty1.NW_012006043v1           C 0 C 0
s chlSab2.chr16                    64990472 17 + 75148670 aaaatgagtagaaaatc
i chlSab2.chr16                    C 0 C 0
s manLeu1.NW_012106252v1            2252930 17 +  4244037 aaaatgagtagaaaatc
i manLeu1.NW_012106252v1           C 0 C 0
s calJac3.chr5_ACFV01176693_random     8528 17 +    37134 aatataagcacagaatc
i calJac3.chr5_ACFV01176693_random C 0 N 0

a score=2591375.000000
s hg38.chr17_JH159148v1_alt    87004 1066 +    88070 aacaaagatatggaagaactcaaaaacaccatcaaccaacaggatctaattaacgtttatagaacagtccatccaacaatagtaaaatacacattcatttcaagtgtccatggaatatatttcaagatggaccacatcttgagccataaaacaatctcaacaaatttataagagttgaaatcatagagtatgttctccaactgcaatggactcaaactagaaattaatgacagaaagataactggggaatcttcaaacacttggaaactaaacagcatacttttgaataatctctaggtcatcaaagaatacttaagggaaattttttaaaa--atgcattgaaatgaatgaaaatgaaaatacaacatgtcaaaacttgcgagacacaattaaagctgtgatgagagggaaagtcatagcattaaatgcatacatttgaaaagaggaaaagtctcaattaattatctaagctcccacctcaagaacctagaaaaagaagagaaaaataaactaaaagcaagcgcaaggaaggaaataataaatataaaagcagaaatcaatgaaattgaaaacagaataataatgaagaaaacaatgtgaaatagtgaaacaaagagctggttctttgaaaatataaatgacagtgaaagatcgaatgctttcccctgaactggaaatactaaatctcactgcttactctacacagtgctcaaagttttaaccagcacaataaggcaagaaaaaaaaataaaggaaaggaagaaataaaactgtctctgtttgtaggtagcatgattatctacatagaaaatctcaaggaatctatgaatacaaacaaacaaataagcaagcaaactctgagaactaatgaatgagttttgaaagattggaagctacaagataaacatacacaatcagctgtattctatatattggcaatgaatgcatggacacagaaattgaaat-aaatgtcatttacaatctctctaaaacatacttaggtgtaaatttaaaaaacatgtacagggcttACCACAGCAGGTTTTTAAAAAAGTAGATATCAATAA
s gorGor5.CYUI01015385v1     4149568 1066 +  4267968 aacaaagatatggaagaactcaaaaacaccatcaaccaacaggatctaattaacgtttatagaacagtccatccaacaatagtaaaatgcacattcatttcaagtgtccatggaatatatttcaagatggaccatatcttgggccataaaacaatctcaacaaatttgtaagagttgaaatcatagagtatgttctccaactgcaatggactcaaactagaagttaatgacagaaagataactggggaatcttcaaacacttggaaactaaacagcatac-tttgaataatccctaggtcaacaaggaatacttaagggaaattttttaaaa--atgcattgaaatgaatgaaaatgaaaatacaacatgtcaaaacttgcgagacacaattaaagctgtgatgagagggaaagtcatagcattaaatgcatacatttgaaaagaggaaaagtctcaattaattatctaagctcccacctcaagaacctagaaatagaagagcaaaataaactaaaagcaagcgcaaggaaggaaatcataaatataaaagcagaaatcaatgaaattgaaaacagaataataatgaagaaaacaatgtgaaatagtgaaacaaagagctggttctttgaaaatataaatgacagtgaaagatcgaatgctttcacctgaactggaaatactaaatctcactgcttactctacacagtgctcaaagttttaaccagcacaataaggcaagaaaaaaaaataaaggaaaggaagaaataaaactgtctctgtttgtagatagcatgattatctacatagaaaatctcaaggaatctatgaatacaaacaaacaaataagcaagcaaactctgagaactaatgaatgagttttgaaagattggaagctacaagataaacatacacaattagctgtattctatatattggcaatgaatgcatggacacagaaattgaaataaaatgtcatttacaatctctctaaaacatacttaggtgtaaatttaaaaaacatgtacagggcttatcacagcaggtttttaaaaaagtagatatcaataa
i gorGor5.CYUI01015385v1    C 0 N 0
s rheMac8.chr16             30195582 1052 - 77216781 aacaaagatacagaagaactcaaaaacaccatcaaccagcaggatctaattaacgtttatagaacagtccatccagcaatagtaaaacacacattcatttcaagtgtccatggaatatatttcaagatggaccatatcttgggccataaaacaatctcaacaaatttataagagttgaaatcatagagtatgttctccaactacgatggactcaaactagaaattaatgacagaaagataactggggaatcttcaaacacttggaaactaaacagcatacttttgaatagtccctaggtcagaaaggaagacttaagggaaatttttttaaaatatgcattgcaatgaatgaaaatgaaaatacaacatgtaaaaacttgggagacataattaaagctgtgatgagagggaaagtcatagcattaaatgcatatattcgaaaagaggaaaagtctc----aattatctaagctcccacctcaagaacctagaaaaataagagcaaaacaaactaaaagcaagcaaaaggaaggaaataataaatataaaagcagaaatcaataaaactgaaaacagagtaataataaagaaaacaaagggaaatagtgaaacaaggagctggttctttgaaagtataaatgacagtgaaagattgaatactttcccctaaattggaaatattaaatctcactgcttattctacacagtgctcaaagttttaaccagcacaataaggcaagaaacaaaaat-----aaaggaagaaatataactgtctctctttgtagatagcatgattgtctacatagaaaatctcaaggaatctatgaat----acaaacaaataagcaagcaaactctgagaactaatgaatgagtttagaaagattggaagctacaagataaacatacacaatctgctgtattctatatatgggcaatgaatgcatggacacagaagttgaaataaaatgtc----acaatccctctaaaacatacttaggtgtaaatttaaaaaacatgtacaggacttACCACAGCAGGTTTTTAAAAAAgtagatatcaataa
i rheMac8.chr16             C 0 N 0
s macFas5.chr16             28106652 1056 - 80997621 aacaaagatacagaagaactcaaaaacaccatcaaccagcaggatctaattaacgtttatagaacagtccatccagcaatagtaaaacacacattcatttcaagtgtccatggaatatatttcaagatggaccatatcttgggccataaaacaatctcaacaaatttataagagttgaaatcatagagtatgttctccaactacgatggactcaaactagaaattaatgacagaaagataactggggaatcttcaaacacttggaaactaaacagcatacttttgaatagtccctaggtcagaaaggaagacttaagggaaattttttaaaaatatgcattgcaatgaatgaaaatgaaaatacaacatgtaaaaacttgggagacataattaaagctgtgatgagagggaaagtcatagcattaaatgcatatattcgaaaagaggaaaagtctc----aattatctaagctcccacctcaagaacctagaaaaataagagcaaaacaaactaaaagcaagcaaaaggaaggaaataataaatataaaagcagaaatcaatgaaactgaaaacagagtaataataaagaaaacaaagtgaaatagtgaaacaaggagctggttctttgaaagtataaatgacagtgaaagattgaatactttcccctaaattggaaatattaaatctcactgcttattctacacagtgcttaaagttttaaccagcacaataaggcaagaaacaaaaat-----aaaggaagaaatataactgtctctctttgtagatagcatgattgtctacatagaaaatctcaaggaatctatgaatacaaacaaacaaataagcaagcaaactctgagaactaatgaatgagtttagaaagattggaagctacaagataaacatacacaatctgctgtattctatatatgggcaatgaatgcatggacacagaagttgaaataaaatgtc----acaatccctctaaaacatacttaggtgtaaatttaaaaaacatgtacaggacttACCACAGCAGGTTTTTAAAAAAgtagatatcaataa
i macFas5.chr16             C 0 N 0
s macNem1.NW_012014910v1     2150579 1056 + 10377808 aacaaagatacagaagaactcaaaaacaccatcaaccagcaggatctaattaacgtttatagaacagtccatccagcaatagtaaaacacacattcatttcaagtgtccatggaatatatttcaagatggaccatatcttgggccataaaacaatctcaacaaatttataagagttgaaatcatagagtatgttctccaactacgatggactcaaactagaaattaatgacagaaagataactggggaatcttcaaacacttggaaactaaacagcatacttttgaatagtccctaggtcagaaaggaagacttaagggaaattttttaaaaatatgcattgcaatgaatgaaaatgaaaatacaacatgtaaaaacttgggagacataattaaagctgtgatgagagggaaagtcatagcattaaatgcatatattcgaaaagaggaaaagtctc----aattatctaagctcccacctcaagaacctagaaaaataagagcaaaacaaactaaaagcaagcaaaaggaaggaaataataaatataaaagcagaaatcaatgaaactgaaaacagagtaataataaagaaaacaaagtgaaatagtgaaacaaggagctggttctttgaaagtataaatgacagtgaaagattgaatactttcccctaaattggaaatattaaatctcactgcttattctacacagtgctcaaagttttaaccagcacaataaggcaagaaacaaaaat-----aaaggaagaaatataactgtctctctttgtagatagcatgattgtctacatagaaaatctcaaggaatctatgaatacaaacaaacaaataagcaagcaaactctgagaactaatgaatgagtttagaaagattggaagctacaagataaacatacacaatctgctgtattctatatatgggcaatgaatgcatggacacagaagttgaaataaaatgtc----acaatccctctaaaacatacttaggtgtaaatttaaaaaacatgtacaggacttaccacagcaggtttttaaaaaagtagatatcaataa
i macNem1.NW_012014910v1    C 0 N 0
s cerAty1.NW_012006043v1     2057380 1056 -  8458610 aacaaagatacagaagaactcaaaaacaccatcaaccagcaggatctaattaacgtttatagaacagtccatccagcaatagtaaaacacacattcatttcaagtgtccatggaatatatttcaagatggaccatatcttgggccataaaacaatctcaacaaatttataagagttgaaatcatagagtatgttctccaactacgatggactcaaactagaaattaatgacagaaagataactggggaatcttcaaacacttggaaactaaacagcatacttttgaatagtccctaggtcagaaaggaagacttaagggaaatttttaaaaaatatgcattgcaatgaatgaaaatgaaaatacaacatgtaaaaacttgtgagacataattaaagctgcgatgagagggaaagtcatagcattaaatgcatatattcgaaaagaggaaaagtctc----aattatctaagctcctacctcaagaacctaggaaaataagagcaaaataaactaaaagcaagcaaaaggaaggaaataataaatataaaagcagaaatcaatgaaactgaaaacagagtaataataaagaaaacaaagtgaaatagtgaaacaaggagctggttctttgaaagtataaatgacagtgaaagattgaatactttcccctaaattggaaatattaaatctcactgcttattctacacagtgctcaacgttttaaccagcacaataaggcaagaaacaaaaat-----aaaggaagaaatataactgtctctgtttgtagatagcatgattgtctacatagaaaatctcaaggaatctatgaatacaaacaaacaaataagcaagcaaactctgagaactaatgaatgagtttagaaagattggaagctacaagataaacatacacaatctgctgtattctatatatgggcaatgaatgcatggacacagaagttgaaataaaatgtc----acaatccctctaaaacatacttaggtgtaaatctaaaaaacatgtacaggacttatcacagcaggtttttaaaaaagtagatatcaataa
i cerAty1.NW_012006043v1    C 0 N 0
s chlSab2.chr16             64990489 1050 + 75148670 aacaaagatacagaagaactcaaaaacaccatcaaccagcaggatctaattaacgtttatagaacagtccatccagcaatagtaaaatacacattcatttcaagtgtccatggaatatatttcaagatggaccatatcttgggccataaaacaatctcaacaaatttataagagttgaaatcatagagtatgttctccaactacgatggactcaaactagaaattaatgacagaaagataattggggaatcttcaaacacttggaaactaaacagcatacttttgaatagtccctaggtcagaaaggaagacttaagggaaatttaaaaaaaatatgcattgcaatgaatgaaaatgaaaatacaacatgtaaaaacttgtgagacataattaaagctgtgatgagagggaaagtcatagcattaaatgcatatatttgaaaagaggaaaagtctc----aattatctcaactcccacctcaagaacctagaaaaataagagcaaaataaactaaaagcaagcaaaaggaaggaaataataaatacaaaagcagaaatcaatgaaactgaaaacagagtaataataaagaaaacaaaatgaaatagtgaaacaaggagctggttctttgaaagtataaatgacagtgaaagattgaatactttcccctaaattggaaatattaaatcttactgcttattctacacagtgctcaaagttttaaccagcacaataaggctagaaacaaaaat-----aaaggaacaaatataactgtctctgtttgtagatagcatgattgtctacatagaaaatctcaaggaatctatgaatacaaacaaacaaataagcaagcaaactcggagaactaatgaatgagtttagaaagattggaagctacaagataaacatacacaatctgctgtattctatatatgggcaatgaatg------cacggaagttgaaataaaatgtc----acaatccctctaaaacatacttaggtgtaaatttaaaaaacatgtacaggacttatCACAGCAGGTTTTAAAAGAAgtagatatcaataa
i chlSab2.chr16             C 0 N 0
s manLeu1.NW_012106252v1     2252947 1053 +  4244037 aacaaagatac---agaactcaaaaacaccatcaaccagcaggatctaattaacgtttatagaacagtccatccagcaatagtaaaacacacattcatttcaagtgtccatggaatatatttcaagatggaccatatcttgggccataaaacaatctcaacaaatttataagagttgaaatcatagagtatgttctccaactacgatggactcaaactggaaattaatgacagaaagataactggggaatcttcaaacacttggaaactaaacagcatacttttgaatagtccctaggtcagaaaggaagacttaagggaaatttttaaaaaatatgcattgcaatgaatgaaaatgaaaatacaacatgtaaaaacttgtgagacataattaaagctgtgatgagagggaaagtcatagcattaaatgcatatattcgaaaagaggaaaagtctc----aattatctaagctcccacctcaagaacctagaaaaataagagcaaaataaactaaaagcaagcaaaaggaaggaaataataaatataaaagcagaaatcaatgaaactgaaaacagagtaataataaagaaaacaaagtgaaatagtgaaacaaggagctggttctttgaaagtataaatgacagtgaaagattgaatactttcccctaaattggaaatattaaatctcactgcttattctacacagtgctcaaagttttaaccagcacaataaggcaagaaacaaaaat-----aaaggaagaaatataactgtctctgtttgtagacagcatgattgtctacatagaaaatctcaaggaatctatgaatacaaacaaacaaataagcaagcaaactctgagaactaatgaatgagtttagaaagattggaagctacaagataaacatacacaatctgctgtattctatatatgggcaatgaatgcatggacacagaagttgaaataaaatgtc----acaatccctctaaaacatacttaggtgtaaatttaaaaaacatgtacaggacttACCACAGCAGGTTTTTAAAAAAgtagatatcaataa
i manLeu1.NW_012106252v1    C 0 N 0

