##maf version=1 scoring=roast.v3.3
a score=251.000000
s hg38.chr1_KI270711v1_random          0 4 +  42210 tgtg
s nomLeu3.chr24_GL397604_1_random 252793 4 + 297174 tgta
i nomLeu3.chr24_GL397604_1_random N 0 C 0

a score=2964.000000
s hg38.chr1_KI270711v1_random            4 6 +    42210 tatgtg
s nomLeu3.chr24_GL397604_1_random   252797 6 +   297174 tatgta
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macNem1.NW_012017688v1          11380480 6 - 14060431 tatgta
i macNem1.NW_012017688v1          N 0 C 0
s chlSab2.chr20_KE148050v1_random  1003139 6 -  1280666 tatgta
i chlSab2.chr20_KE148050v1_random N 0 C 0

a score=5062.000000
s hg38.chr1_KI270711v1_random           10 6 +    42210 tatgtg
s nomLeu3.chr24_GL397604_1_random   252803 6 +   297174 tatgta
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macNem1.NW_012017688v1          11380486 6 - 14060431 tatgta
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random  1003145 6 -  1280666 tatgta
i chlSab2.chr20_KE148050v1_random C 0 C 0
s rhiRox1.KN298638v1                   651 6 -    28529 tatgta
i rhiRox1.KN298638v1              N 0 C 0

a score=9009.000000
s hg38.chr1_KI270711v1_random            16 4 +     42210 tatg
s ponAbe2.chrUn                    11398743 4 +  72422247 tatg
i ponAbe2.chrUn                   N 0 C 0
s nomLeu3.chr24_GL397604_1_random    252809 4 +    297174 tagg
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103737463 4 - 225584828 tatg
i rheMac8.chr1                    N 0 C 0
s macNem1.NW_012017688v1           11380492 4 -  14060431 tatg
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1003151 4 -   1280666 tatg
i chlSab2.chr20_KE148050v1_random C 0 C 0
s rhiRox1.KN298638v1                    657 4 -     28529 tatg
i rhiRox1.KN298638v1              C 0 C 0
s saiBol1.JH378257                  2797188 4 -   4070394 tatg
i saiBol1.JH378257                N 0 C 0

a score=6552.000000
s hg38.chr1_KI270711v1_random            20 2 +     42210 ta
s ponAbe2.chrUn                    11398747 2 +  72422247 ta
i ponAbe2.chrUn                   C 0 C 0
s nomLeu3.chr24_GL397604_1_random    252813 2 +    297174 ta
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103737467 2 - 225584828 ta
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11380496 2 -  14060431 ta
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1003155 2 -   1280666 ta
i chlSab2.chr20_KE148050v1_random C 0 C 0
s rhiRox1.KN298638v1                    661 2 -     28529 ta
i rhiRox1.KN298638v1              C 0 C 0
s saiBol1.JH378257                  2797192 2 -   4070394 ta
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             259059 2 +    407294 ta
i cebCap1.NW_016108146v1          N 0 C 0

a score=27687.000000
s hg38.chr1_KI270711v1_random            22 8 +     42210 tgtgtatg
s ponAbe2.chrUn                    11398749 8 +  72422247 tatgtata
i ponAbe2.chrUn                   C 0 C 0
s nomLeu3.chr24_GL397604_1_random    252815 8 +    297174 tgtgtata
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103737469 8 - 225584828 tatgtata
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211807424 8 + 227556264 tatgtata
i macFas5.chr1                    N 0 C 0
s macNem1.NW_012017688v1           11380498 8 -  14060431 tatgtata
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1003157 8 -   1280666 tatgtata
i chlSab2.chr20_KE148050v1_random C 0 C 0
s rhiRox1.KN298638v1                    663 8 -     28529 tatgtata
i rhiRox1.KN298638v1              C 0 C 0
s saiBol1.JH378257                  2797194 8 -   4070394 tgtgtaga
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             259061 8 +    407294 tatgtata
i cebCap1.NW_016108146v1          C 0 C 0

a score=412984.000000
s hg38.chr1_KI270711v1_random            30 92 +     42210 tgtatgtgtatatgtatatgtatatgta---GTCCTCAGGTTGTATTCCTTAAATATATATA-ATATATGTAATTCCTTAAATATATAATTTTAAT
s ponAbe2.chrUn                    11398757 90 +  72422247 tgtatatgtatatgtatgtgtacatgtatatgtCCTCAGGTTGTATTCCttaaatatatata------tgtaattccttaaatatataattttaat
i ponAbe2.chrUn                   C 0 I 32788
s nomLeu3.chr24_GL397604_1_random    252823 65 +    297174 tgtataggtatgtgtatatgtataCGTA---GTCCTCAGATTGT----------------------------ATTCCTTAAATATATAATTTTAAT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103737477 91 - 225584828 tgtatatgtatatgtatatgtatatgta---GTCCTCAGGTTGTATTCCTtaaatatatata-atatatataattccttaaatatat-atTTTAGT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211807432 87 + 227556264 tgtatatgtatatgtatatgtatatgta---GTCCTCAGGTTGTATTCCTTAAATAT------ATACATGTAATTCCTTAAATATATAATTTTAAC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11380506 87 -  14060431 tgtatatgtatatgtatatgtatatgta---GTCCTCAGGTTGTATTCCTTAAATAT------ATACATGTAATTCCTTAAATATATAATTTTAAC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1802215 92 -   2461138 tgtatatgtatatgtatatgtatatgta---GTCCTCAGGTTGTATTCCTtaaatatatata-atatatataattccttaaatatataATTTTAGT
i cerAty1.NW_012001440v1          N 0 C 0
s chlSab2.chr20_KE148050v1_random   1003165 92 -   1280666 tgtatatgtatatgtatatgtatatgta---GTCCTCAGGTTGTATTCCTtaaatatatata-atatatataattccttaaatatataATTTTAGT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             485676 92 -   1325925 tgtatatgtatatgtatatgtatatgta---GTCCTCAGGTTGTATTCCTtaaatatatata-atatatataattccttaaatatataATTTTAGT
i manLeu1.NW_012105087v1          N 0 C 0
s rhiRox1.KN298638v1                    671 87 -     28529 tgtatatgtatatgtatatgtatatgta---GTCCTCAGGTTGTATTCCTTAAATAT------ATATATGTAATTCCTTAAATATATAATTTTAAT
i rhiRox1.KN298638v1              C 0 C 0
s saiBol1.JH378257                  2797202 91 -   4070394 tgtacatgtatatgtgtatgtatatA-----ATCCTGAGGTTGTATTCCttaaatatatataaatatatagaattccttaaatatataattttaat
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             259069 91 +    407294 tgtatatgtataagtgtatgtatatg-----ATCCTCAGGTTGTATTCCTTAAATATATATAAATATATAGAATTCCTTACATATACAATTTTAAT
i cebCap1.NW_016108146v1          C 0 C 0

a score=144902.000000
s hg38.chr1_KI270711v1_random           122  46 +     42210 ACAAA-ATTTTTAAAAGATTCCTTTCATAAACATTTACAATAA---------------------------------------------------------CACC
s nomLeu3.chr24_GL397604_1_random    252888  46 +    297174 ACAAA-ATTTTAAAAAGATTCCTTTAATAAACATTTACAATAA---------------------------------------------------------CATC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103737568 103 - 225584828 ACAAA-ATTTTTTAAAGATTCCTTTAATAAACATATACAATAACATCAAGAAGTATCAACTACATAGCAAAGATGTGAAAGTCAGCCAGACTCGCAATAGCATC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211807519  46 + 227556264 ACAAA-ATTTTTAAAAGATTCCTTTAATAAACATTTACAATAA---------------------------------------------------------CATC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11380593  46 -  14060431 ACAAA-ATTTTTAAAAGATTCCTTTAATAAACATTTACAATAA---------------------------------------------------------CATC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1802307  46 -   2461138 ACAAA-ATTTTTAAAAGATTCCTTTAATAAACATATACAATAA---------------------------------------------------------CATC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1003257  46 -   1280666 ACAAA-ATTTTTAAAAGATTCCTTTAATAAACATATACAATAA---------------------------------------------------------CATC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             485768  46 -   1325925 ACAAA-ATTTTTTAAAGATTCCTTTAATAAACATATACAATAA---------------------------------------------------------CATC
i manLeu1.NW_012105087v1          C 0 C 0
s rhiRox1.KN298638v1                    758  46 -     28529 ACAAA-ATTTTTAAAAGATTCCTTTAATAAACATTTACAATAA---------------------------------------------------------CATC
i rhiRox1.KN298638v1              C 0 N 0
s saiBol1.JH378257                  2797293  35 -   4070394 aaaaa-tttttaaaaaGCGTATTTTA-----------CAATAG---------------------------------------------------------CATT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             259160  44 +    407294 AAAAATTTTTTCTAAAGATTACTTTA---AACATTTCCAATAA---------------------------------------------------------CATC
i cebCap1.NW_016108146v1          C 0 C 0
e ponAbe2.chrUn                    11398847 32788 +  72422247 I

a score=302120.000000
s hg38.chr1_KI270711v1_random           168 106 +     42210 AAGAAATATAAACTA----------------------------------------------------------------------CA-------------------------------TAGCAAAGATGTGAAAGCCAGCCAGGCGCAGCTTCAaatcctagcgcttaggaaggctgtggcaggagggtcgcttgagctcagaagct
s nomLeu3.chr24_GL397604_1_random    252934 163 +    297174 AAGAAATATAAACTATGTAGCAAAGATCTGAAAGCCAGCCAGGCTCTCAATAGCATCAAGAAATA-------------TAAACTACA-------------------------------TAGGAAAGATGTGAAAGCCAGCCAGGCTTGGCTTCAaatctcagcactttggaaggctgtggcaggaggttcgcttgagctcagaagct
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103737671 106 - 225584828 AAGAAATATAAACTACAT-----------------------------------------------------------------------------------------------------AGAAAAGATGTGAAAGCCAGCCAGGTTCGGCTTCAaatcccagcactttggaaggctgtggcaggagggtcgcttgagctcagaggct
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211807565 106 + 227556264 AAGAAACATAAACTACAt-----------------------------------------------------------------------------------------------------agaaaagatgtgaaaaccagccaggctcggcctcaaatgccagcactttggaaggctgtggcaggagggtcgcttgagctcagAGGCT
i macFas5.chr1                    C 0 I 3768
s macNem1.NW_012017688v1           11380639 106 -  14060431 AAGAAATATAAACTACAT-----------------------------------------------------------------------------------------------------AGAAAAGATGTGAAAACCAGCCAggctcggcctcaaatgccagcactttggaaggctgtggcaggagggtcgcttgagctcagaggct
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1802353 163 -   2461138 AAGAAGTATCAACTACATAGCAAAGATGTGAAAGTCAGCCAGGCTCGCAATAGCATCAAGAAATA-------------TAAACTACA-------------------------------CAGAAAAGATGTGAAAGCCAGCCAGGTTCGGCTTCAaatcccagcactttggaaggctgtggcaggagggtcgcttgagctcagaggct
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1003303 163 -   1280666 AAGAAGTATCAACTACATAGCAAAGATGTGAAAG--------------------------------------------TCAGCCAGGCTCGCAATAGCATCAAGAAATATAAACTACATAGAAAAGATGTGAAAGCCAGCCAGGTTCGGCTTCAaatgccagcactttggaaggctgtggcaggagggtcgcttgagctcagaggct
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             485814 163 -   1325925 AAGAAGTATCAACTACATAACAAAGATGTGAAAGTCAGCCAGGCTCGC-------------AATAGCATCAAGAAATATAAACTACA-------------------------------TAGAAAAGATGTGAAAGCCAGCCAGGTTCGGCTTCAaatcccagcactttggaaggctgtggcaggagggtcgcttgagctcagaggct
i manLeu1.NW_012105087v1          C 0 C 0
s saiBol1.JH378257                  2797328 105 -   4070394 AGGAAATATAAACTATAT-----------------------------------------------------------------------------------------------------AGCAAAGATATGAAAGCTAGCCAggctcagcttcaaatcgcagcaacttgg-aggctgtggcaggagggtcgcttgagctcagaaatt
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             259204  92 +    407294 AGGAAAT-------------------------------------------------------------------------------------------------------------------AAAGATGTGAAAGCCAGCCAggctcagcttcaaatcccagcaacctggaaggctgtggcaggagggttgcttgagctcagaaatt
i cebCap1.NW_016108146v1          C 0 C 0
e ponAbe2.chrUn                    11398847 32788 +  72422247 I

a score=1469530.000000
s hg38.chr1_KI270711v1_random           274 535 +     42210 tgaaactagcttaggcaacatagtgagacctcatctctactgaaaatcagaaaaattatccggctgtggtggtgtgagcctgtagtcccaggtactcagtggatgaggccctaggatgtcatcggcctgagaattccatgctgcagtgagctgtgtgatcttgccactgtactccagcctgagtgaaagagtgagatcgtgtctagaaacaaaagaag-aaaaaaa-aaaaGGTGTGAAAGCCTATATATTGAAGATTACCACGTATTACTGAGAGCAGTTAAAGACCTTTGGAATAGAGAACGTtccttcttgcatttcaagattgcttttgttttggggggacacttgctgttttttaggaacatgaagttcttctcaggcattcctgtaaaaaaagccac--tttttgataggattgtattgagtctgtggattgctttgagttgtatttttatcttaaccatgttacaacttccaacccatggacacaagatgtctttccattgatttaggtcttccttagtctcctcgagcaat
s nomLeu3.chr24_GL397604_1_random    253097 528 +    297174 tgaaactagcctaggaaacatagtgaaaactcatttctattgcaaatcagaaaaattatcccggtgtggtggtgtgagcctgtagtcccaggaactcagtggatgaggccctaggatgtcacaggcctgagaattccatgctacagtgagctgtg--atcgtgccactgtactccagcctgagtga----gtgagatcgtgtctagaaacaaaagcag-aaaaaTc-aaa-gatgtgaaagcctatatattgaagactaccaagtattgctgacagcagttaaagaCCTTTGGAATAGAGAATGCtccttcttacatttcaagattgcttttgttttggggggacacttgctattttttaagaatatgaagtttttcttaggcattcctgtaaaaaaggccac--tttttgataggattgtattgaatctgtggattgcttttagttgtatttttatcttaaccatgttacaacttccaacccatgaacacaagatatctttccatttatttaggtcttccttaatctccatgagcaat
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103737777 533 - 225584828 tgaaactagcctaggcaacatagtgagacctcatctctactgaaaatcagaaaaattatccaggtgtggtggtgtgagcctgtagtcctaggtactcagtggatgaggccctaggatgtcatagatctgagaatttcatgctgcagtgagctgtg--ttcgtgccactgtactccagcctgagtgaaagagtgagattgtgtctagaaacaaaggaaa-aaaaaaa-aaaaGATGTGAAAGCCTATATATTGAAGACTACCAAGTATTGCTGAGAGCAGTTAAAGACCTTTGGAATAGAGAATGCTCCTACTTGCAtttcaagattgcttttgttttggggggacacttgctatcttttaggaatatgaagttcgtcttaggcatttctgtaaagaaggccac--tttttgataggactgtattgaatctgtggattgctttgagttgtatttttatcttcaccatgttacaacttccaacccatgaacacaagatgtctttccattgatttaggtcttccttaatctcctcaagcaat
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11380745 530 -  14060431 tgaaactagcctaggcagcatagtgagacctcatttctactgaaaatcagaaaaattatccgggtgtggtggtgtgagcctatagtcccaggtactcagtggatgaggccctaggatgtcacaggcctgagaattccatgctgcagtgagctgtg--atcgtgccactgtactccagcctgggtgaaagagtgagtttgtgtctagaaacaaagg------aagaa-aaaagatgtgaaagcctatatattgaagactaccaagtattgctgagagcagttaaagaCCTTTGGAATAGAGAAtgttcctccttgcatttcaagattgcttttgttttggggggacacttgctattttttaggaatatgaagttcttcttaggcatttctgtaaaaaaggccactttttttggtaggattgtattgaatctgcggattgctttgagttgtatttttatcttaactatgttacaacttccaacccatgaacacaagatgtctttccattgatttaggttttccttaatctcctcgagcaat
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1802516 525 -   2461138 tgaaattagcctaggcaacatagtgagacctcatctctactgaaaatcaaaaaaattatccaggtgtggtggtgtgagcctgtagtcctaggtactcagt--------ccctaggatgtcatagatctgagaatttcatgctgcagtgagctgtg--ttcgtgccactgtactccaggctgagtgaaagagtgagattgtgtctagaaacaaaggaag-aaaaaaa-aaaaGatgtgaaagcctatatattgaagactaccaagtattgctgagagcagttaaagaCCTTTGGAATAGAGAAtgttcctacttgcatttcaagattgcttttgttttggggagacacttgctatcttttaggaatatgaagttcttcttaggcatttctgtaaaaaaggccac--tttttgataggactgtattgaatctgtggattgctttgagttgtatttttatcttcaccatgttacaacttccaacccatgaacacaagatgtctttccattgatttaggtcttccttaatctcctcaagcaat
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1003466 534 -   1280666 tgaaactagcctaggcaacatagtgagagctcatctctactgaaaatcagaaaaattatccggatgtggtggtgtgagcctgtagtcctaggtactcagtggatgaggccctaggatgtcacaggcctgagaattccatgctgcagtgagctgtg--ttcgtgccaccgtactccagcctgagtgaaagagtgagattgtgtctagaaacaaaggaagaaaaaaaa-aaaaGATGTGAAAGCCTATATATTGAAGACTACCAAGTATTGCTGAGAGCAGTTAAAGACCTTTGGAATAGAGAAtgttcctccttgcatttcaagattgcttttgctttggggggacacttgctgttttttaggaatatgaagttcttcttaggcatttctgtaaaaaaggccac--tttttgataggattgtattgaatctgtggattgctttgagttgtatttttatcttcaccatgttacaacttccaacccatgaacacaagatgtctttccattgatttacgtcttccttaatctcctcgagcaat
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             485977 533 -   1325925 tgaaactagcctaggcaacatagtgagacctcatctctactgaaaatcagaaaaattatccaggtgtggtggtgtgagcctgtagtcctaggtactcagtggatgaggccctaggatgtcatagatctgagaatttcatgctgcagtgagctgtg--ttcgtgccactgtactccaggctgagtgaaagagtgagattgtgtctagaaacaaaggaag-gaaaaaa-aaaaGATGTGAAAGCCTATATATTGAAGACTACCAAGTATTGCTGAGAGCAGTTAAAGACCTTTGGAATAGAGAATGTTCCCACTTGCAtttcaagattgcttttgttttggggggacacttgctattttttaggaatatgaagttcttcttaggcatttctgtaaaaaaggccac--tttttgataggactgtattgaatctgcggattgctttgagttgtatttttatcttcaccatgttacaacctccaacccatgaacacaagatgtctttccattgatttaggtcttccttaatctcctcgagcaat
i manLeu1.NW_012105087v1          C 0 C 0
s saiBol1.JH378257                  2797433 515 -   4070394 taaaactagcctgggcaacatagtgagacctcgtctctactgaaaacgataaaaattatccaggtgtggcggtgtgagcctgtagccccag-------gtggatgaggccctaggatctcaagggcctgagaattccctgctgcagtgagctggg--accgtgcccctgtagtccagcctgaaag---gagtgagattctgtctAGAAATGAATTTTA-AAAAAAA------GTGTGAAAGCCTGTATACTGAAGATTAGCAGGTATTGCTGAGAGCTGTTAAAGACCTTTGGAATAGAGGAtgttccttcttgcatttcaagattg-ttttgttctgggggcacacttgccatttctcaggaatatgaagttcttccaaaccattcctataaaaagggccat----tttgagaaagttatattgaatatgtggattgctttgagttgtatttttatcttaaccatgttacatcttttaacccatggacacaagatgtcttcccacttatttagatcttctttgatctccttgagcaat
i saiBol1.JH378257                C 0 I 2269
s cebCap1.NW_016108146v1             259296 525 +    407294 taaaactagcctgggcaacatagtgagacctcgtctctactgaaaactataaaaattatccaggtgtggcagtgtgagcctgtagccccaggtgctcagtggatgaggccctaagatctcatgggtctgagaattccatgctgcagtgagctggg--actgtgcccctgtactccagcctgagagaaagagtgagatcctgtctagaaatgaatgaga-aaaaaaaaaaaaGATGTGAAAGCCTGTATATTGAAGACCACCAGGTATTGCTGAGAAC----AAAGACCTTTGGAATAGAGGAtgttccttcttgcatttcaagattgcttttcttttgaggatacacttgctatttcttaggaatatgaagtccttctcagccattcctgtaaaaagagtcat----tttgatcaagttgtattgaatctgtggattgctttgagttgtatttttatcttaaccatgttacatcttgtaacccatggacacaagatagctttccacttacttagg---tctttaatctccttgagcaat
i cebCap1.NW_016108146v1          C 0 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I
e ponAbe2.chrUn                    11398847 32788 +  72422247 I

a score=10696.000000
s hg38.chr1_KI270711v1_random           809 4 +     42210 gttc
s nomLeu3.chr24_GL397604_1_random    253625 4 +    297174 gttc
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103738310 4 - 225584828 gttc
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11381275 4 -  14060431 gttc
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1803041 4 -   2461138 gttc
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1004000 4 -   1280666 gttc
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             486510 4 -   1325925 gttc
i manLeu1.NW_012105087v1          C 0 C 0
s cebCap1.NW_016108146v1             259821 4 +    407294 gttc
i cebCap1.NW_016108146v1          C 0 I 2225
e macFas5.chr1                    211807671 3768 + 227556264 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chrUn                    11398847 32788 +  72422247 I

a score=349721.000000
s hg38.chr1_KI270711v1_random           813 210 +     42210 tgtagttgtctgtgtacaagtactgcaacttcttgaacaaatttattcccaggcatattatccttacaggtgctattataaatgaaatcattgtgtcagtttacttctcagatagctcattgccatcacaatggattgtttgctgaaagtttgctgaattcacttattaactctgata------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
s nomLeu3.chr24_GL397604_1_random    253629 205 +    297174 tgtagctgtctgtgtacaagtactgcacctccttgaaaaaaattattcccaggcatattatccttacaggtgctattatgaatgaaataaatgtgtcaattttcttctcagattgttcactgctaacacaactgattgtttgctgaaagtttgctgaattcacttactaactctagta------gtgtgtgtgtgtgtgtgtgtgtctgtg-----
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103738314 204 - 225584828 tgtagttgtctgtgtacaagtactacaccttctcgaacaaatttattcccaggcatgttattcttacaggtgctattatacatgaaatcattgtgtcaattttcttctcagattgttcattgctaacacaactgattgcttgctgaaagtttgctgaattcacttattaactctagta------gtgtgtgtgtgtgtgtgtgtgtgtgt------
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11381279 201 -  14060431 tgtagttgtctgtgtataagtactgcaccttcttgaacaaatttattcccaggcatagtattcttacaggtgctattataaatgaaatcattgtgtcaattttcttctcagattgttcattgctaacacaactgattgtttgcggaaagtttgctgaattcgcttattaactctagta------atgtgtatgtctgtctgtgtgtg---------
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1803045 210 -   2461138 tgtagttgtctgtgtacaagtactgcaccttctcgaacaaatttattcccaggcatgttattcttacaggtgctattatacatgaaatcattgtgtcaattttcttctcagattgttcattgctaacacaactgattgcttgctgaaagtttgctaaattcacttattaactctagtagagagtgtgtgtgtgtgtgtgtgtgtgtgtgt------
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1004004 210 -   1280666 tgtagttgtctgtgtacaagtactgcaccttctcgaacaaatttattcccaggcatgttattcttacaggtgctattataaatgaaatcattgtgtcaattttcttctcagattgttcattgctaacacaactgattgcttgctgaaagtttgctgaattcacttattaactctagta------gtgtgtatgtgtgtttgtgtgtgtgtgtgtgt
i chlSab2.chr20_KE148050v1_random C 0 I 99
s manLeu1.NW_012105087v1             486514 210 -   1325925 tgtagttgtctgtgtacaagtactgcaccttctcgaacaaatttattcccaggcatattattcttacaggtgctattataaatgaaatcattgtgtcaattttcttctcagattgttcattgctaacacaactgattgcttgctgaaagtttgctgaattcacttattaactctagta------gtgtgtgtgtgtgtgtgtgtgtatgtatgtgt
i manLeu1.NW_012105087v1          C 0 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chrUn                    11398847 32788 +  72422247 I

a score=146005.000000
s hg38.chr1_KI270711v1_random          1023 127 +     42210 gtgtgtctggtgtctgtgtgcatgtatgtgtgtttgcctttgtatgtattgtttgggattttctatgcataggatcacaccatctgcaaattgagatcattttgttttctgttcaaaaatatttttt
s nomLeu3.chr24_GL397604_1_random    253834 118 +    297174 ---------gtctctgtgtgcatgtatgtgtgtttgCAtttgtatgtattatttgggattttctatacataggatcacaccatctgcaaattgagatcattttgttttctgttcaaaaatatttttt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103738518 127 - 225584828 atgtgtgtggtctctgtgtgcatgtatgtgtgtttgcatttgtatgtattatttgggattttctacatatagaatcacaccatctgcaaattgagatcattttgttttctgttcaaaaatatttttt
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11381480 101 -  14060431 --------------------------tgtgtgtttgcatttgtatgtattatttgggattttctatatatacgatcacaccatctgcaaattgagatcattttgttttctgttcaaaaatacttttt
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1803255 127 -   2461138 atgtgtgtggtctctgtgtgcatgtatgtgtgtttgcatttgtatgtattatttgggattttctacatatagaatcacaccatctgcaaattgagatcattttgttttctgttcaaaaatatttttt
i cerAty1.NW_012001440v1          C 0 C 0
s manLeu1.NW_012105087v1             486724 121 -   1325925 ------gtggtctctgtgtgcatgtatgtgtgtttgcatttgtatgtattatttgggattttctacatatagaatcacaccatctgcaaattgagatcattttgttttctgttcaaaaatatttttt
i manLeu1.NW_012105087v1          C 0 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chrUn                    11398847 32788 +  72422247 I
e chlSab2.chr20_KE148050v1_random   1004214  99 -   1280666 I

a score=449493.000000
s hg38.chr1_KI270711v1_random          1150 269 +     42210 ctcatgtttatttttgaaagataatttggccaggtgtagacttgtaggtgacagtttttctttttttaagtactttattgcaaacttcttgtttgtaaaatttcctatgagaaatcttatgccatccttatatttagtgctctgtatgtaacatgttcttttcccttttattacttttaggatttcctttttatcactggttttgatggatttgattaaggtgttccttggtgaagttttctgcatgtttcttgttcttgggataatca
s nomLeu3.chr24_GL397604_1_random    253952 269 +    297174 ctcatgtttatttttgaaagataaattggccaggtgaagaattgtagacttcagtttttctttttttaagtactttattgcaaacttcttgtttgtaaagtttccgatgagaaatcttatgccatccttatatttagtgctctgtatgtaacatgctctttctccttttattccttttaagatttcctttttatcactggttttaacagatttgattaaggtgttccttggtgaagttttcttcatgtttcttctgcttagaataattg
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103738645 264 - 225584828 ctcatgtttatttttgaaagataatttggccaggggtagaattgtaggcaatagtttttctttttttaagtactttattgccaacttcttgtttgtaaagtttcctatgagaaatcttacgccatccttatatttagtgctctgtatgtaacatgttctttccccttttactacttt-----tttccttttgatcactggttttgatggatttgattaaggtgttccttggtgaagttttcttcatgtttcttgttcttagaataatca
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11381581 264 -  14060431 ctcatgtgtatttctgaaagataatttggccaggtgtagaattgtaggtgacagtttttc-----ttaagtactttattgcaaacctcttgtttgtaaagtttcctatgaaaaatctcatgccatctttatatttagtgctctgtatgtaacatgttctttccccttttattacttttaggatttcctccttgtcactgattttgatggatttgattaaggtgttccttggtgaagttttcttcatgtttcttgttcttagaataatca
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1803382 264 -   2461138 ctcatgtttatttttgaaagataatttggccaggggtagaattgtgggcaatagtttttctttttttaagtactttattgccaacttcttgtttgtaaagtttcctatgagaaatctgatgccatccttctaggcagtgctctgtatgtaacatgttctttccccttttactacttt-----tttccttttgatcactgattttgatggatttgattaaggtgttccttggtgaagttttcttcatgtttcttgttcttagaataatca
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1004313 269 -   1280666 CTCATGtttatttttgaaagataatttgtccaggtgtagaattgtcggcaacagtttttctttttttaattattttattgccaacttcttgtttgtaaagtttcctatgagaaatcttatgccatccttacatttagtgctctgtatgtaacatgttctttccccttttactacggttaggatttccttttgatcactcattttgatggatttgattaaggtgttccttggtgaagttttcttcatgtttcttgttcttagaataatca
i chlSab2.chr20_KE148050v1_random I 99 C 0
s manLeu1.NW_012105087v1             486845 264 -   1325925 ctcatatttatttttgaaagataatttggccaggggtagaattgtaggcaatagtttttctttttttaagtactttattgccaacttcttgtttgtaaagtttcctatgagaaatcttatgccatccttatatttagtgctctgtatgtaacatgttctttccccttttactacttt-----tttccttttgatcactgattttgatggatttgattaaggtgttccttggtgaagttttcttcatgtttcttgttcttagaataatca
i manLeu1.NW_012105087v1          C 0 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chrUn                    11398847 32788 +  72422247 I

a score=724109.000000
s hg38.chr1_KI270711v1_random          1419 316 +     42210 tatttctgtaatatttgaagtttatgatttccatggagcttctaaatctttcatccagtatgttttaaatatctttgtctctcttctccactacctgcccttcagggattccatttagccctatactagggtgtttaaagttttgatgctgatggtctttatgtgttttcaagtcatttgttaatgtgtgtttcatttatgttagtttcaacttctattccttctagtttaataatcttctcttctgcaatatttaatccagtgccttcttccatttcacactgtaaatcatagtttttatctacagaatttgata
s nomLeu3.chr24_GL397604_1_random    254221 313 +    297174 tatttctgtaatatttgaagtttatagtttccatggagcttctaaatctttcatccagaatgttttaaatatctttatttctcttctccactacatacccttcagggattccatttagccttatactaggatgtttaacgtttttatgctgatggtctttttatgttttcaagtcatttgttactgtgtgtttcatttatgttagtttcaacttctattccatctagttcaataatct---cttctgcaatgtttaatccagtgccttcttccatttcagactgtaaatcatagtttttatctacagaatttgata
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103738909 315 - 225584828 tgtttctgtaatatttgaagtttatgctttccatggagcttctaaatctttcatccagtatgttttaagtatctttgtctctcttctccactacacgcccttcagggattccatttagccctatactagggtgtttaaagtttttatgctgatggtcctttta-gttttcaagtcatttgttactgtgtgtttcatttatgttagtttcaacttctattccctctagttcaataatcttctcttctgcaatgtttaatccagtgctttcttccatttcagactgtaaatcatagattttatctacataatttgata
i rheMac8.chr1                    C 0 I 1
s macNem1.NW_012017688v1           11381845 314 -  14060431 tgtttctgtaatatttgaagtttatggtttccatggagcttctaaatctttcatccagtatgttttaaatatctttgtctctcttctccactacacgcccttcggggattccatttagccctatactagggtgtttaaagtttttatactgatggtctttttatgttttcaagtcatttgtgactgtgtgtttcatttatgttagtttcaacttctattccttctagttcaataatcttctcttctgcaatgtttagtccagtgccttcttccatttcagactgtaaatc--agtttttatctgtagaatttgata
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1803646 314 -   2461138 tgtttctgtaatatttgaagtttatgctttccatggagcttctaaatctttcatccagtatgttttaagtatctttgtctctcttctccactacacgccctt-gggaattccatttagccctatactagggtgtttaaagtttttatgctgatggtcctttta-gttttcaagtcatttgttactgtgtgtttcatttatgttagtttcaacttctattccctctagttcaataatcttctcctctgcaatgtttaatccagtgctttcttccatttcagactgtaaatcataaattttatctacagaatttgata
i cerAty1.NW_012001440v1          C 0 I 1
s chlSab2.chr20_KE148050v1_random   1004582 314 -   1280666 tatttctgtaatatttgaagtttatggtttccatggagcttctaaatctttcacccagtatgttttaagtatctttgtctctcttcaccactacacgcccttcagggattccatttagtcctatactagggtgtttaaagtttttatgctgatggtccttttatgttttcaagtcatttgttactgtgtgtttcctttatgttagtttcaacttctattccctctagttcaataattttctcttctgcaatgtttaatccagtgctttcttccatttcagactataaatc--agtttttatctacagaatttgata
i chlSab2.chr20_KE148050v1_random C 0 I 1
s manLeu1.NW_012105087v1             487109 316 -   1325925 tgtttctgtaatatttgaagtttatgctttccatggagcttctaaatctttcatccagtatgttttaagtatctttgtctctcttctccactacacacccttcagggattccatttagccctatactagggtgtttaaagtttttatactgatggtctttttatgttttcaagtcatttgtgactgtgtgtttcatttatgttagtttcaacttctattccctctagttcaataatcttctcttctgcaatgtttaatccagtgctttcttccatttcagattgtaaatcatagattttatctacagaatttgata
i manLeu1.NW_012105087v1          C 0 I 1
s colAng1.NW_012114988v1            3727003 313 -   3775709 TATTTCTGTAATATTTGAAAtttatgcttttcatggagcttctaaatcttccatccaatatgttttaaatatctttgtccctcttctccactacacacacttcaaggattccatttagccctctg-gagggtgtttaaagtttttatactgatggtctttttatgttttcaagtcatttgttac--tgtgtttcatttatgttagtttcaacttctattccttctagttcgataatcttcccttctgcaatgtttagttcagtgccttcctccatttcagactgtaaatcatagtttttatctagagaatttgata
i colAng1.NW_012114988v1          N 0 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chrUn                    11398847 32788 +  72422247 I

a score=3276.000000
s hg38.chr1_KI270711v1_random          1735 1 +     42210 t
s nomLeu3.chr24_GL397604_1_random    254534 1 +    297174 t
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103739225 1 - 225584828 t
i rheMac8.chr1                    I 1 C 0
s macNem1.NW_012017688v1           11382159 1 -  14060431 t
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1803961 1 -   2461138 t
i cerAty1.NW_012001440v1          I 1 C 0
s papAnu3.chr1                     98500382 1 - 220367699 t
i papAnu3.chr1                    N 0 N 0
s chlSab2.chr20_KE148050v1_random   1004897 1 -   1280666 t
i chlSab2.chr20_KE148050v1_random I 1 C 0
s manLeu1.NW_012105087v1             487426 1 -   1325925 t
i manLeu1.NW_012105087v1          I 1 C 0
s colAng1.NW_012114988v1            3727316 1 -   3775709 t
i colAng1.NW_012114988v1          C 0 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chrUn                    11398847 32788 +  72422247 I

a score=398051.000000
s hg38.chr1_KI270711v1_random          1736 177 +     42210 ttaaaaaatcttcaacctctccatttaattaaaatacaattatactaattgcggtaacgtccttttcttctatttccaacgtgtgtgtcaatttcaaccagattattagattcttcagtatgtgtcatgttttcctgcttctttgactgcttgatattcttttatttttatttattt
s nomLeu3.chr24_GL397604_1_random    254535 174 +    297174 ttaaaaaatcttcaatctctccatttaattAAAACACAATTATACTAACTGCTCTAATGTCCTTTTCTTCTATTTCCAACGTGTGT--CAATTTCAACTAGAT-ATTAGATTCTTCCTTATGTGTTATGTTTTCCTGCTTCTTTGGCTGCTTGATAttcttttatttttatttactt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103739226 176 - 225584828 ttaaaaaatcttcaatctctccatttaattaaaatacaattatactaactgttctaacgtccttctcttctatttccaacatgtgtgtcaatttcaagtagattattagattcttcattgtgtgtcatgttttcctgtttctttggctgcttgatattctttta-ttttatttattt
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11382160 177 -  14060431 ttaaaaaatcttcaacctctccatttaattaaaatacaattatactaactgttctaatgtccttttcttctatttccaacatgtgtggcaatttcaactggattattagattcttcattatgtgtcatgttttcctgcttctttggctgcttgatattcttttatttttatttattt
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1803962 176 -   2461138 tttaaaaatcttcaatctctccatttaattaaaatataattatactaactgttctaacgtccttctcttctatttccaacatgtgtctcaatttcaactagatcattagattcttcattatgtgtcatgttttcctgcttctttggctgcttgatattctttta-ttttatttattt
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1004898 176 -   1280666 ttaaaaaatcttcaatctctccatttaattaaaatacaattatactaactgttctaacgtccttttcttctatttcctacatgtgtgtcaatttcaactagattattagattcttcattatgtgtcatgttttcctgtttctttggctgcttgatattctttta-ttttttttattt
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             487427 176 -   1325925 ttaaaaaatcttcaatctctccatttaattaaaatataattatactaactgttctaacgtccttctcttttatttccaacatgtgtgtcaatttcaagtagattattagaatcttcattgtgtgtcatgttttcctgtttctttggctgcttgatattctttta-ttttatttattt
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3727317 172 -   3775709 ttaaaaaatcttcaacctctccatttaattaa-----aattatactaactgttctaatgtccttttcttctatttccaacatgtgtctcaatttcaactagatcattagattcttcattatgtgtcatgttttcctgcttctttggctgcttgatattcttttatttttatttgttt
i colAng1.NW_012114988v1          C 0 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chrUn                    11398847 32788 +  72422247 I

a score=-5375.000000
s hg38.chr1_KI270711v1_random          1913 1 +     42210 -g
s nomLeu3.chr24_GL397604_1_random    254709 1 +    297174 -t
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103739402 1 - 225584828 a-
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11382337 1 -  14060431 a-
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1804138 1 -   2461138 a-
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1005074 1 -   1280666 a-
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             487603 1 -   1325925 a-
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3727489 1 -   3775709 a-
i colAng1.NW_012114988v1          C 0 I 1
s rhiBie1.NW_016824255v1               8034 1 -     35952 G-
i rhiBie1.NW_016824255v1          N 0 N 0
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chrUn                    11398847 32788 +  72422247 I

a score=614442.000000
s hg38.chr1_KI270711v1_random          1914 294 +     42210 tttttgggggg-atggagtttcactctcgttgcccagtctggagtgcaattgtgtgatctcagctcactgcaacctctgcctcccaggtactcaagcgattctcctgtctccgcct-cccaagtagctcagattacaggcatgcaccatcatgcccagctaaact-ttttgtgtttagtagagacagggcttcaccatgctagtcaggctggtcgtgaactcctgacctcaggtgatccacccggctGCTTGATATTCTAAGATTTGATGCTGGAGCTTTGGTGTCAATGCTCAAAA
s nomLeu3.chr24_GL397604_1_random    254710 295 +    297174 ttggtgggggggatggagcttcactctcattgcccaggctggagtgcaatggtgtgatcttggctcactgccacttccgcctcccaggtacacaagcgattctcctgtctcagcct-cccaagtagctcagtttacaagcacgcaccaccataactggctaattt-tttttgatttagtagatatggggtttcaccatgctagtcaggctggtcgtgagctcctgacctcaggtgatccccctggctGCTTGATATTCTAAGATTTGATGCTGCAGCTTTGGTGTCAATGCTCAAAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103739403 290 - 225584828 tttttggg--g-atggagtttcactcttgttgcccagactgaagtgcaatggtgtaatctcagctcactgcaacctctgccgcccaggcacacaagtgattctcttgtctcagcct-cccaa-ttgctcagattacaggcatgtgcccccatgcctggctaatg--ttttgtatttagtagagacagggtttcaccacgctagtcaggctggttgtgacctcctgacctcaggtgatccacctgGTTGCTTGATATTCTTAGATTTGATGCTGGAGCTTTGGTGTCAATGCTCAAAA
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11382338 292 -  14060431 ttctttggaag-atggaatttcactctcattgaccatgctggagtacaatggcgtgatctcagctcactgcaacctctgtctcccaggtacacaagcgattctcctgtctcagcct-cccaa-ttgctcagattacaggcatgcgccaccatgcctggctaatgt-ttttgtatttagtagagacggggtttcaccacgctagtcaggctggtcgtgacct-ctgacctcaggtgatccacctggctGCTTTATATTCTAAGATTTGATGCTAAAGCTTTGGTGTCAATGCTCAAAA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1804139 291 -   2461138 ttttttgg--g-atggagtttcactcttgttgcccagactgaagtgcaatggtgtaatctcagctcactgcaacctctgccgcccaggcacacaagtgattctcttgtctcagcct-cccaa-ttgctcagattacaggcatgtgcccccatgcccggctaattt-ttttgtatttagtagagacggggtttcaccacgctagtcaggctggttgtgacctcctgacctcaggtgatccgcctgGTTGCTTGATATTCTTAGATTTGATGCTGGAGCTTTGGTGTCAATGCTCAAAA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1005075 284 -   1280666 ttttttgg--g-atggagtttcactct-------caggctgaagtgcaatggtgtaatctcagctcactgcaacctctgccgcccaggtacacaagtgattctcttgtctcagctt-cccaa-ttggtcagattacaggcatacgcccccatgcccagctaattt-ttttgtatttagtagagacggggtttcaccacactagtcaggctggtcatgacttcctgacctcaggtgatccacctggctGCTTTATATTCTAAGATTTGATGCTGGAGCTTTGGTGTCAATGCTCAAAA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             487604 291 -   1325925 ttttttgg--g-atggagtttcactcttgttgcccagactgaagtgcaatggtgtaatctcagctcactgcaacctctgccacccaggcacacaagtgattctcttgtctcagcct-cccaa-ttgctcagattacaggcatgtgcccccatgcctggctaatgt-ttttgtatttagtagagacggggtttcaccatgctagtcaggctggtcgtgaccccctgacctcaggtgatccacctggctGCTTTATATTCTAAGATTTGATGCTGGAGCTTTAGTGTCAATGCTCAAAA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3727491 294 -   3775709 ttttttggggg-acggagttttgctctcg-tgcccaggctggagtgcaattgtgtgatctcagctcacggaaacctccacctcccaggtacacaagcgattctcctttctcagcctccccag-tagctcacattacaggtatgcaccaccatgcctggctaatttgttttgtatttagcagagacggggtttcaccatgctagtcaggctggtcgtgaactcctgacctcaggtgatccacccggctcCTTGATATTCTAAGATTTGATGCTGGAGCTTCGGTGTCAATGCTCAAAA
i colAng1.NW_012114988v1          I 1 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chrUn                    11398847 32788 +  72422247 I

a score=3600.000000
s hg38.chr1_KI270711v1_random          2208 1 +     42210 G
s ponAbe2.chr1                    107344553 1 + 229942017 G
i ponAbe2.chr1                    n 32788 I 67
s nomLeu3.chr24_GL397604_1_random    255005 1 +    297174 G
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103739693 1 - 225584828 G
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11382630 1 -  14060431 G
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1804430 1 -   2461138 G
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1005359 1 -   1280666 G
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             487895 1 -   1325925 G
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3727785 1 -   3775709 G
i colAng1.NW_012114988v1          C 0 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I

a score=165928.000000
s hg38.chr1_KI270711v1_random          2209 67 +     42210 TGCCCAAAGACACCACTCAACCTCAGTGTCTATGCACACCCAAGCTTTTGCAACAGGAGAGGTAGAG
s nomLeu3.chr24_GL397604_1_random    255006 67 +    297174 TGCCCAAAGACACCACTCGACCTCAGTGTCTATGCACACCCAAGCTTTTGCAACAGGACAGGTAGAG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103739694 67 - 225584828 TGCCCAAAAACACCACTCGACCTCAGTGTCTATGCACACCCAAGCTTTTGCAACAGGAGAGGAAGAG
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11382631 67 -  14060431 TGCCCAAAGACACCACTCGACCTCAGTGTCTATGCACACCCAGGCTTTTGCAACAGGAGAGGAAGAG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1804431 67 -   2461138 TGCCCAAAAACACCACTCGACCTCAGTGTCTATGCACACCCAAGCTTTCGCAACAGGAGAGGAAGAG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1005360 67 -   1280666 TGCTCAAAGACACCACTCGACCTCAGTGTCTATGCACACTCAAGCTTTTGCAACAGGAGAGGAAGAG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             487896 67 -   1325925 TGCCCAAAAACACCACTCGACCTCAGTGTCTATGCACACCCAAGCTTTTGCAACAGGAGAGGAAGAG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3727786 67 -   3775709 TGCCCAAAGACACCACTCAACCTCAGTGTCTACGCACACCCAAGCTTTTGCAACAGGAGAGGTGGAG
i colAng1.NW_012114988v1          C 0 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chr1                    107344554 67 + 229942017 I

a score=10602.000000
s hg38.chr1_KI270711v1_random          2276 4 +     42210 ACAG
s ponAbe2.chr1                    107344621 4 + 229942017 AGAG
i ponAbe2.chr1                    I 67 I 251
s nomLeu3.chr24_GL397604_1_random    255073 4 +    297174 AGAG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103739761 4 - 225584828 AGAG
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11382698 4 -  14060431 AGAG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1804498 4 -   2461138 AGAG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1005427 4 -   1280666 AGAG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             487963 4 -   1325925 AGAG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3727853 4 -   3775709 ACAG
i colAng1.NW_012114988v1          C 0 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I

a score=599647.000000
s hg38.chr1_KI270711v1_random          2280 250 +     42210 CAGAGATGAATGTGCTACAACATGCTGGTAGAAGGTACCCCAATTGTGCTTGGGGCTT-CCTATGCCTCATAGAATAATGTGCCTTCCTTAATTTTTCCCATAAGAACCACCCTACTTCATGCCCTGTCTCTCTGTCCAAACACCAGGACAGCCCTCAGACCAGTCTCAACCAcccaatggattgacaaaggtccaaatatgattcagtggagaaggcattctcttgtcaacaaattgtgtagaaacaact
s nomLeu3.chr24_GL397604_1_random    255077 251 +    297174 CAGAGATAAGTGTGCTACAACATGCTGGCAGAGGCCACCTCAATTTTGCTTGGGGCTTTCCTATGCTTCACAGAAAAATGTGTCTTCCTTAATTTTTCCCATAAGAACTACCCTACTTCACGCCCTGTCTCTCTGTCCAAACACCAGGACAGTCCTCTCACCAATCTCAACCAcccaatggattgacaaatgtccaaataagactcagtggagaaggcattctcttgtcaacaaattgtgtagaaacaact
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103739765 251 - 225584828 CAGAGATGAGTGTGCTACAACATGCTGGTAAAGGGTACCCCAATTATGCTTGGGGCTTTCCTATGCCTCATGGAAAGATGTGCCTTCCTTAATTTTTCCCATAAGAACCCCCCTACTTCATGCCCTGTCTCTCTGTCCAAACACCAGGACAGTCCTCTCACCAGCCTCAACtacccaatggattgacaaacgtccaaatatgactcagtggagaaggcattctcttgtcaacaaattgtgtagaaacaact
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11382702 251 -  14060431 CAGAGATGAGTGTGCTACAACATGCTAGTAGAGGGTACCCCAATTATGCTTGGGGCTTTCCTATGCCTCATGGAAAGATGTGCCTTCCTTAATTTTTCCCATAAGAACCACCCTACTTCATGCCCTGTCTCTCTGTCCAAACACCAGGACAGTCCTCTCACCAGCCTCAACCAcccaatggattgacaaacgtccaaatatgactcagtggaaaaggcattctcttgtcaacaaattgtgtagaaacaact
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1804502 251 -   2461138 CAGAGATGAGTGTGCTACAACATGCTGGTAAAGGGTACCCCAATTATGCTTGGGGCTTTCCTATGCCTCATGGAAAGATGTGCCTTCCTTAATTTTTCCCATAAGAACCCCCTTACTTCATGCCCTGTCTCTCTGTCCAAACACCAGGACAGTCCTCTCACCAGCCTCAACtacccaatggattgacaaacgtccaaatatgaatcagtggagaaggcattctcttgtcaacaaattgtgcagaaacaact
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1005431 251 -   1280666 CAGAGATGAGTGTGCTACAACATGCTGGTAGAGGGTACCCCAATTGTGCTGGGGGCTTTCCTATGCCTCATGGAAAGATGTGCCTTCCTTAATTTTTACCATAAGAACCACCCTACTTCATGCCCTGTCTCTCTGTCCAAACACCTGGACAGTCCTCTCACCAGCCTCAACCAcccaacagattgacaaacgtccaaatatgactcagtggaaaaggcattctcttgtcaacaaattgtgtagaaacaact
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             487967 251 -   1325925 CAGAGATGAGTGTGCTACAACATGCTGGCAAAGGGTACCCCAATTATGCTTGGGGCTTTCCTATGCCTCATGGAAAGATGTGCCTTCCTTAATTTTTCCCATAAGAACCACCCTACTTCATGCCCTGTCTCTCTGTCCAAACACCAGGACAGTCCTCTCACCAGCCTCAACtacccaatggattgacaaacgtccaaatatgactcagtggagaaggcattctcttgtcaacaaattgtgtagaaacaact
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3727857 251 -   3775709 CAGAGATGAGTGTGCTGCAACATGCTGGTAGAGGGTACCCCAATTGTGCTTGGGGCTTTCCTATGCCTCATACAAAAATGGGCCTTCCTTAATTTTTCCCTTAAGAACCACCCGACTTCATGCCCAGTCTCTCTGTCCAAACACCAGGACAGTCCTCTCACCAGTCTCAACCAGCCAATGGAttgacaaaggtccaaatatgattcagtggagaaggcactcccttgtcaacaaattttgcagaaacaact
i colAng1.NW_012114988v1          C 0 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chr1                    107344625 251 + 229942017 I

a score=15640.000000
s hg38.chr1_KI270711v1_random          2530 5 +     42210 ggaca
s ponAbe2.chr1                    107344876 5 + 229942017 ggaca
i ponAbe2.chr1                    I 251 I 238
s nomLeu3.chr24_GL397604_1_random    255328 5 +    297174 ggaca
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103740016 5 - 225584828 ggaca
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11382953 5 -  14060431 ggaca
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1804753 5 -   2461138 ggaca
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1005682 5 -   1280666 ggaca
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             488218 5 -   1325925 ggaca
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3728108 5 -   3775709 ggaaa
i colAng1.NW_012114988v1          C 0 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I

a score=227699.000000
s hg38.chr1_KI270711v1_random          2535 103 +     42210 tgcatatccccaaaggaaaaagattcacctgaacctcaatactgactcaaaaactaactcaaaatggattatgcaactaaatataaactataaaagtagaaaa
s nomLeu3.chr24_GL397604_1_random    255333 103 +    297174 tgcatatccccaaaggaaaaaaattcacctgaacctcaatactgactcaaaaactaactcaaaaaggattatgcaactaaatataaactataaaactagaaaa
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103740021  97 - 225584828 tgcatatccccaaaggaaaaaaattcacctgaacctcaatactcactcaaaggctaactcaaaatggattatgcaac------taaactataaaactagaaaa
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11382958 103 -  14060431 tgcatatccccaaaggaaaaaaattcacctgaacctcaatactcactcaaaaactaactcaaaatggattatgcagctaaatataaactataaaaccagagaa
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1804758  97 -   2461138 tgcatatccccaaaggaaaaaaattcacctgaacctcaatactcactcaaaggctaactcaaaatggattatgcaac------taaactataaaactagaaaa
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1005687  97 -   1280666 tgcatatccccaaaggaaaaaaattcacctgaacctcaatactcactcaaaaactaactcaaaatggattatgcaac------taaactataaaactagaaaa
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             488223  97 -   1325925 tgcatatccccaaaggaaaaaaattcacctgaacctcaatactcactcaaaggctaactcaaaatggattatgcaac------taaactataaaactagaaaa
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3728113 102 -   3775709 tgcatatccccaaaggaaaaaaaatcacctgaacctcaa-agtcactcaaaaactaactcaaaatggattatgcaactaaatataaactataatactagaaaa
i colAng1.NW_012114988v1          C 0 I 8
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chr1                    107344881 238 + 229942017 I

a score=251849.000000
s hg38.chr1_KI270711v1_random          2638 138 +     42210 agtatagcaggaaatataagacaaaatcttcacgacacag--ttaggcaaagtgttctttgttatcaagaaacacaaaccattaaagaaaacattgataaattcaactttataaaaagtaaaagtttttgctcaacacga
s nomLeu3.chr24_GL397604_1_random    255436 140 +    297174 agtatagcagaaaatataagaaaaaatcttcatgacacagagttaggcaaagtgttctttgttatcaataaacacaaaccattaaagaaaacattaataacttcaactttataaaaattaaaagtttttgctcaacacaa
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103740118 140 - 225584828 agtacagcagaaaatataagacaaaatcttcacgatacagagttaggcaaagtgatctttgttatcaataaacacaaaccattaaagaaaacattgataaattcaactttataaaaattaaaagtttttgctcaacacaa
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11383061 140 -  14060431 agtatagcagaaaatataagacaaaatcttcacgatacagagttaggcaaagtgatctttgttatcaataaacacaaaccattaaagaaaacattgataaattcaactttataaaaattaaaagtttttggtcaacacaa
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1804855 140 -   2461138 agtacagcagaaaatataagacaaaatcttcacgatacagagttaggcaaagtgctctttgttatcaataaacacaaaccattaaagaaaacattgataaattcaactttataaaaattaaaagtttttgctcaacacaa
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1005784 140 -   1280666 agtatagcagaaaatataagacaaaatcttcacgatacagagttaggcaaagtgatctttgttatcaataaacacaaaccataaaagaaaacattgataaattcaacttcataaaaattaaaagtttttgctcaacacaa
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             488320 140 -   1325925 agtacagcagaaaatataagacaaaatcttcacaatacagagttaggcaaagtgctctttgttatcaataaacacaaaccattaaaaaaaacattgataaattcaactttataaaaattaaaagtttttgctcaacacaa
i manLeu1.NW_012105087v1          C 0 C 0
e colAng1.NW_012114988v1            3728215   8 -   3775709 I
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chr1                    107344881 238 + 229942017 I

a score=4494.000000
s hg38.chr1_KI270711v1_random          2776 2 +     42210 ga
s ponAbe2.chr1                    107345119 2 + 229942017 ga
i ponAbe2.chr1                    I 238 I 1415
s nomLeu3.chr24_GL397604_1_random    255576 2 +    297174 ga
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103740258 2 - 225584828 ga
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11383201 2 -  14060431 gg
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1804995 2 -   2461138 ga
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1005924 2 -   1280666 ga
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             488460 2 -   1325925 ga
i manLeu1.NW_012105087v1          C 0 C 0
e colAng1.NW_012114988v1            3728215 8 -   3775709 I
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I

a score=265756.000000
s hg38.chr1_KI270711v1_random          2778 152 +     42210 cagtattaagagaacaaatataagctgcagattgggagaaaaacaggggaaatgacaaatgtgacaaaggacaagtgtgatagttacttgcacgtatcactgtgactgagcaccagggtgccgggacattcggccaaatgtgattctggttg
s nomLeu3.chr24_GL397604_1_random    255578 152 +    297174 cagtaataaaagaacaaatataagctgcggattgggagaaaaacagtggaaatcacaaatatgacaaagggcaagtgtgatagttacttgtacttgtcactgtgaccgagcaccacggtgccaggacatttggccaaacatgattctggttg
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103740260 151 - 225584828 cagtaataagagaacagatataagctgcagactggaagaaaaacagtggaaatcacaaatatgacaaagggcATGtgtgatagttacttgtacgtgtcactgtgaccgagcacca-ggtgctgggacatttggccaaacatgattctggttg
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11383203 151 -  14060431 tagtattaagagaacaaatataagctgcagattggaagaaaaacagtggaaatcacaaatatgacaaagggcATGtgtgatagttacttgtacgtgtcactgtaaccaagcacca-ggtgccaggacatttggccaaacatgattctggttg
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1804997 151 -   2461138 cagtaataagagaacagatataagctgcagactggaagaaaaacagtggaaatcacaaatatgacaaagggcATGtgtgatagttacttgtacgtgtcactgtgaccgagcacca-ggtgccgggacatctggccaaacatgattctggttg
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1005926 152 -   1280666 cagtaataagagaacagatataagctgcagactggaagaaaaacagtggaaatcacaaatatgacaaaCGGCATGtgtgatagttacttgtacgtgtcactgtgaccaagcaccagggcgccgggacatttggccaaacatgattcttgttg
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             488462 151 -   1325925 cagtaataagagaacagatataagctgcagactggaagaaaaacagtggaaatcacaaatatgacaaagggcATGtgtgatggttacttgtacgtgtcactgtgaccgagcacca-ggtgccgggacatttggccaaacatgattctggttg
i manLeu1.NW_012105087v1          C 0 C 0
e colAng1.NW_012114988v1            3728215   8 -   3775709 I
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chr1                    107345121 1415 + 229942017 I

a score=1390600.000000
s hg38.chr1_KI270711v1_random          2930 369 +     42210 tgttccagagagtgtttcacatatgattaacatcgggatgggcagactaagtgaagcagattgccccccttaacgggggtgggactcatgcaatcaatcaaaggtcaggagagaattaagaggcCTAATGGGAAACAAATgctttcctgggtatcca----gctttccttccatcttgggaatttcagcctccataatctcagaaacaaattcacataTGTAT------ACACACACA--TATACATTTCATAGGTATGTGGCTAAGATTGTATTTTTAAaagttcagccatgagatgattggtgaagccagccaatgaataagggtgtgttctattatatgactcagtcttcttttgtacacgattgaagttctgcatTT
s panTro5.chr1                    207995981 375 - 228573443 tgttacagagagtgtttcgcatatgattaacatcgggatgggcagactaagtgaagcagattgccccccttaacgggggtgggactcatacaatcaatcaaaggccaggagagaattaagaggcCTAACAGGAAACAAATgctttcctgggtatccatccagctttccttccatcttgggaatttcagcctccataatctcagaagcaaattcACATATGTAT------ACACACACACATATACATTTCATAGGTATGTGGCTAAGATTGTATTTTTAAaagttcagccatgagatgattggtgaagccagccaatgaataaaggtgtgttctgttatatgactcggtcttcttttgtacatgattgaagttctgcatTT
i panTro5.chr1                    N 0 C 0
s panPan2.chr1                    208129984 373 - 229774977 tgttacagagagtgtttcgcatatgattaacatcaggatgggcagactaagtgaagcagattgccccccttaacgggggtgggactcatacaatcaatcaaaggtcaggagagaattaagaggcCTAACAGGAAACAAATgctttcctgggtatccatccagctttccttccatcttgggaatttcagcctccataatctcagaagcaaattcACATATGTAT------ACACACACA--TATACATTTCATAGGTATGTGGCTAAGATTGTATTTTTAAaagttcagccatgagatgattggtgaagccagccaatgaataaaggtgtgttctgttatatgactcggtcttcttttgtacatgattgaagttctgcatTT
i panPan2.chr1                    N 0 C 0
s gorGor5.CYUI01015145v1            3793867 368 -   8455952 tgttccagagagtgtttcgcatatgattaacatcgggatgggcagactaagtgaagcagattgccccccttaacgggggtgggactcatgcaatcaatcaaaggtcaggagagaattaagaggcCTAATAGGAAACAAATgctttcctgggtatcca----gctttccttccatcttgggaatttcagcctccataatctcagaagcaaattcacataTGTAT------ACACACACA--TATACATTTCATAGGTATGTGGCTAAGAGTGTATTTTTAAAAGTTCAGCCACGAGATGATTGGTGAAGCCAGCCAATGAATAAGGGTGTGTTCTATTATATGACTCAGTCTTC-TTTGTACATGATTGAAGTTCTGCATTT
i gorGor5.CYUI01015145v1          N 0 C 0
s nomLeu3.chr24_GL397604_1_random    255730 375 +    297174 tgttccagagagtgtttcagatacgattaacactgggatgggcagactaagtgaagcagattgccctccttaatgggggtggggctcatacaatcaatcaaatgccaggagagaattaagaagcCTAATGGAAAACAAATGTTTTCCTGGGTATACA----GCTTTCCTTCCATCTTTGGAATTTCAGCCTCCATAATCTCAGAAGcaaattcatatatatatatatacacacacaca--tatacatttcataGGTATGTGTCTAAGATTGTATTTTTAAaagttcagccatgagatgattggtgaagccagccaatgaataagggtgtgttctattatatgattcagtcttcttttgtacatgattgaagttctgcatTT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103740411 369 - 225584828 tgttccagagagtgtttcggatacgagtaacattgggatgggcagactaagtgaagcagattggcctccttaatgggggtgggactcatacaatcaatcaaaggccaggagagaattaagaggcCTAATGGGAAACAAATgctttcctgggtatcca----gctttccttccatcttgggaatatcagcctccataatctcagaagcaaattcatatatatat------acacacaca--tatacatttcataGGTATGTGACTAACGTTGTATTTTTTAaagttcagccatgagatgattggtgaagctagccaatgaataagggtgtgttctattatatgattcagtcttcttttgtacacaattgaagttctgcatTT
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11383354 362 -  14060431 tgttccagagagtgtttcggatacgagtaacattggggtgggcagactaagtgaagcagattgtcctccttaatgggggtgggactcatacaatcaatcaaaggccaggagagaattaagaggcCTAATGGGAAAAAAATgctttcctgggtatcca----gctttccttccatcttgggaatttcagcctccataatctcagaagcaaattcATATATATAT----ACACACACACA--TATGCATTTCATAGGTATGTGGCTAAGATTGTATTTTTAAAAGTTCAGCCATGA---------TGAAGCCAGTCAATGAATAAGGGTGTGTTCTATTATATGATTCAGTCTTCTTTTGTACACAATTGAAGTTCTGCATTT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1805148 369 -   2461138 tgtttcagagagtgtttcggatacgagtaacattgggatgggcagactaagtgaagcagattgtcctccttaatgggggtgggactcatacaatcaatcaaaggccaggagagaattaagaggcCTAATGGGAAACAAATgctttcctgggtatcca----gctttccttccatcttgggaatttcagcctccataatctcagaagcaaattcatatatatat------aaaCACACA--TATACATTTCATAGGTATGTGACTAACGTTGTATTTTTTAaagttcagccatgagatgattggtgaagctagccaatgaataagggtgtgttctattatatgattcagtcttcttttgtacacaattgaagttctgcatTT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1006078 371 -   1280666 tgttccagaaagtgtttcggatacaagtaacattgggatgggcagactaagtgaagcagattgtcctccttaatgggggtgggactcatacaatcaatcaaaggccaggagagaattaagaggcCTAATGGGAAACAAATgctttcctgggtatcca----gctttccttccatcctgggaatttcagcctccataatctcagaagcaaattcatataTATAT------ATACACACATGTATACATTTCATAGGTATGTGACTAAGGTTGTATTTTTAACAGTTCAGCCATGAGATGATTGGTGAAGCCAGCCAATGAATAAGGGTGTGTTCTATTATATGATTCAGTCTTCTTTTATACACAACTGAAGTTCTGCATTT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             488613 360 -   1325925 tgttccagagagtgtttcggatacgagtaacattgggatggacagactaagtgaagcagattgtcctccttaatgggggtagaactcatacaatcaatcaaaggccaggagagaattaagaggcCTAATGGGAAACAAATGCTTTCCTGGGTATCCA----GCTTTCCTTCCATCTTGGGCATTTCAGC---------CTCAGAAGCAAATTCATATATATAC------ACACACACA--TATACATTTCATAGGTATGTGACTAACGTTGTATTTTTAAaagttcagccatgagatgattggtgaagctagccaatgaataagggtgtgttctattatatgattcagtcttcttttgtacacaattgaagttctgcatTT
i manLeu1.NW_012105087v1          C 0 C 0
e colAng1.NW_012114988v1            3728215   8 -   3775709 I
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chr1                    107345121 1415 + 229942017 I

a score=3617759.000000
s hg38.chr1_KI270711v1_random          3299 814 +     42210 GAAGTAGGAGGACAGGAGAGAGCAAGTCCACCTAGGATGATAACAGCTGAATTTCTCAACAGACACTTCAAAGCCCTAGGGGTTAACTTAGAGAGTCAAAAATCCCACCCATAACCCTGCCCCTAAACGCCAGGACTAGGGAACACTGTGGCCCTCAGGTGATTTTGTTTCACTTGGTCTGGGAGCCACACAAGGGCAGAGGGAGCAGGAAACACTAAGCAAA--TCGAGGCCAGGACAGCAGGGAGG------GCC--TGTTCATGACAGAACACAGGTAAAACTATCCTCAGAAAGAGCATGTGGAGAAACATAGATCATGCCTGAGAcctggtggattagagcactggctactggggaattgaaaggaaggggcttcaccatgcagaggaccagaggtgccagtcttggaaacgcagaattgctgggagatggggaggcatggacaaaggaagcatcctctggagactcatggtgaaga--gaac----aaatgaagtaactggcagaaattataggtcctggtagaacaaaatagaatcccacaatgagaacatacagcATGTATGTCCCgcaaggaagacaatagctcctaaaaatgcaagaaaaatcattttgggcaaacaccttatatccagtaatgcgatccatgtatcaagaccacgag-gaagattattaaacatgctaaactcagcgagacctgattccctcatgaggactctgttaaggatgagtaccactcagcaagtgatgactgtgacattcacttttgaacagctcatgagcattaatatatttaattgtggatctaaaccaaaaaccaaggtgt
s panTro5.chr1                    207996356 812 - 228573443 GAAGTAGGAGGATAGGAGAGAGCAAGTCCACCTAGGATGATA-CAGCTGAATTTCTCAACAGACACTTCAAAGCCCTAGGGGTTAACTTAGAGAGTCAAAAATCCCACCCATAACCCTGCCCCTAAAAGCCAGGGCTAGGGAACACTGTGGCCCTCAGGTGATTTTCTTTCACTGGGTCTGCAAGCCACACAAGGGCAGAGGGAGCAGGAAACACTATGCAAA--TCGAGGCCAGGACAGCAGGGAGG------GCC--TGTTCATGACAGAACACAGGTAAAACTATCCTCAGAAAGAGCATGTGGAGAAACACAGATCATGCCTGAGAcctggtggattagagcactggctactggggaattgaaaggaaagggcttcaccatgcagaggaccagaggtgccagtcttggaaatgcagaattgatgggagatggggaggcatggacaaaggaagcatcctctggagactcatggtgaaga--gaac----aaatgaagtaactggcagaaattataggtcctggtagaacaaaatagaatcccacaacgagaacatacaCCATGTATGTCCCGCAAGGAAGACAATAGCTCCTaaaaatgcaagaaaaatcattttgggcaaacaccttatatccagtaatgcgatccatgtatcaagaccatgag-gaagactattaaacatgctaaactcagcgagacctgattccctcatgaggactctgtta-ggatgagtaccactcagcaagtgatgactgtgacattcacttttgaacagctcatgagcattaatatatttaattgtggatctaaaccaaaaaccaaggtgt
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208130357 815 - 229774977 GAAGTAGGAGGATAGGAGAGAGCAAGTCCACCTAGGATGATAACAGCTGAATTTCTCAACAGACACTTCAAAGCCCTAGGGGTTAACTTAGAGAGTCAAAAATCCCACCCATAACCCTGCCCCTAAACGCCAGGGCTAGGGAACACTGTGGCCCTCAGGTGATTTTCTTTCACTGGGTCTGCAAGCCACACAAGGGCAGAGGGAGCAGGAAACACTATGCAAA--TCGAGGCCAGGACAGCAGGGAGG------GCC--TGTTCATGATAGAACCCAGGTAAAACTATCTTCAGAAAGCGCGTGTGGAGAAACATAGATCATGCCTGAGAcctggtggattagagcactggctactggggaattgaaaggaaggggcttcaccgtgcagaggaccagaggtgccagtcttggaaatgcagaattgctgggagatggggagtcatggacaaaggaagcatcctctggagactcatggtggagaacaaac----aaatgaagtaactggcagaaattataggtcctggtagaacaaaatagaatcccacaacgagaacatacaCCATGTATGTCCCGcaatgaagacaatagctcctaaaaatgcaagaaaaatcattttgggcaaacaccttatatccagtaatgtgatccatgtatcaagaccatgag-gaagactattaaacatgctaaactcagcgagacctgattccctcatgaggactctgtta-ggatgagtaccactcagcaagtgatgactgtgacattcacttttgaacagctcatgagcattaatatatttaattgtggatctaaaccaaaaaccaaggtgt
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3794235 816 -   8455952 GAAGTAGGAGGATAGGAGAGAGCAAGTCCACCTAGGATGATAACAGCTGAATTTCTCAACAGACACTTCAAAGCCCTAGGGGTTAACTTAGAGAGTCAAAAATCCCACCCATAACCCTGCCCCTAAACACCAGGACTAGGGAACACTGTTGCCCTCAGGTGATTTTCTTTCACTGGGTCTGGGAGCCACACAAGGGCAGAGGGAGCAGGAAACACTATGCAAATCTCGAGGCCAGGACAGCAGGGAGG------GCC--TGTTCATGACAGAACACAGGTAAAACTATCCTCAGAAAGAGCATGTGGAGAAACACAGATCATGCCTGAGACCTGGTGGATTAGAGCACTGGCTACTGGGGAATTCAAAGGAAGGGGTTTCACCATGCAGAGGACCAGAGGTGCCAGTCTTGGAAATGCAGAATTGCTGGGAGATGGGGAGGCATGGACAAAGGAAGCATCCTCTGGAGACTCATGGTGAAGA--GAACAA--AAATGAAGTAACTGGCAGAAATTATAGGTCCTGGTAGAACAAAATAGAAT-CCACAACGAGAACATACACCATGTATGTCCCgcaaggaagacaatagctcctaaaaacgcaagaaaaatcattttgggcaaacaccttatatccagtaatgcgatccatgtatcaagaccgtgag-gaagattattaaacatgctaaactcagcgagacctgattccctcatgaggactctgtta-cgatgagtaccactcagcaagtgatgactgtgacattcacttttgaacagctcatgagcattaatatatttaattgtgcatctaaaccaaaaaccaaggtgt
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    256105 826 +    297174 GAAGTAGGAGGATGGGAGAGAGTAAGTCCACCTAGGATGATAACAGCTGAATTTCTCAACATACACTTCAAAGCCCTAGGGGTTAACTTAGAGAGTCAAAAATTCCACCCATAATCCTGCCCCTACACACCAGGGCTAGGAAACATTGTGGCCCTCAGGTGATTTTATTTAGCCGGGTGTGGGAGACACACGACAGCAGAGGGAGCAGGAAACACTATGCAAA--TAGAGGCCAGGACAGCAGGGAGACATTTTACCTGTGTTAATGACAGAACACAGGTAAAACTATCCACAG-AAGCAAGTGTGGAGAAACACAGATCATGCCTGAGACCTGGTGGATTAGAGCACTGGCTACTGGGGAATTGAAAGGAAAGAGCTTCACCATGCAGAGGACAAGAATTGCCAGTCTTGGAAACGCAGAATTCCTGGGAGATGGGGAGGCGTGGACCATGGAAGTATCCTCTGGAGACTCGTGGTGAAGA--GAACAAATGAATGAAGTAACTGGCAGAAATTAGAGTTCCTGGTAGAACAAAATAGAATCCTGCGATGAGAACATACACCATATATGTCCCCcaaggaagacaatatctcctaaaaactcaagaaaaatcattttgggcaagcaccttatatccagtaatgtgatccatgttttaagaccgtgagaaaagattattaaacatgctaaactcagtgagacccaattccctcaggaggactctgttaaggatgagtaccactcagcaagagatgactgtaacattcacttttgaatagctcatgagcattaatatatttaattgaggatctaaaccaaaaacaaacgtgg
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103740780 800 - 225584828 GAAGTAGGAGGATAGGAGAGAGCAAGGCCACCTAGGATGATAACAGCTGAATTTCTCAACATACACTTCGAAGCCCTAGGGGTTAACTTAGAGAATCAAAAATCCCACCCACAATCCTGCCCCTAAACACCAGGGCTAGGGAACACCATGGCCCTCAGGTGATTTTATTTAGCCAGGTCTGGGAGCCACACAACGGCAGAGGGAGCAGGAAACACTATGCAAA--TAGAGGCCAGGACAGCAGGGAGG------GGC--TGTTCATGACAGAACACAGGTAAAACTATCCTTGAAAAGTGAGTGTGGAGAAACACAGATCATGCCTGAGATCTGGTGGATTAGAGCACTGGCTACTGGGGAATTGAAAGGAAGGGGCTTCGCCGTGCGGAGGACCAGAGGTGCCAATCTTGGAAACGCAGAATTGCTGGGAGATGGGGAGGCATGGACAAAGGAAGCATCCTCTGGAGACTCGTGGTGAGGA--GAACAAATGAATGAAGTAACTGGCAGAAATTAGAGGTCCTGGTAGAACAAAATTGAATCCCACAATGAGAACACACACCATGTATGTCCCCCAAGGAAGACAATATCTCCTAAAAACTca-------------------agcacctcatatccagtaatgtgatccatgtatcaagatcgtgagaaaagattattaaacatgctaaactcagcaagacctgattcgttcatgaggaccctgttaaggattagtaccactcagcaagtgatgactgtgacattcacttttgaatagctcataagcattaatatatttaattgtggatctaaaccaaaaaccaaggtgg
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11383716 797 -  14060431 GAAGTAGGAGGATAGGAGAGAGCAAGGCCACCTAGGATGATAACAGCTGAATTTCTCAACATACACTTCGAAGCCCTAGGGGTTAACTTAGAGAATCAAAAATCTCACCCATAATCCTGCCCCTAAACACCAGGGCTAGGGAACACCGTGGCCCTCAGGTGATTTTATTTAGCCGGGTCTGGGAGCCACACAACGGCAGAGGGAGCAGGAAACACTATGCAAA--TAGAGGCCAGGACAGCAGGGAGG------GGC--TGTTCATGACAGAACACAGGTAAAACTACCCTCAGAAAGAGCGTGTGGAGAA--ACAGATCATGCCTGAGAcctggtggattagagcactggctactggggaattgaaaggaaggggcttcaccgtgcagaggaccagaggtgccaatcttggaaacgcagaattgctgggagatggggaggcgtggacaaaggaagcatcctctggagactcgtggtgagga--gaacaaatgaatgaagtaactggcagaaattagaggtcctggtagaacaaaattgaatcccacaatgagaacacacaCCATGTATGTCCCCCAAGGAAGACAATATCTCCTAAAAACTca-------------------agcacctcatatccagtaatgcgatccatgtatcaagatcgtgagaaaagattattaaacatgctaagctcagcgagacctgattccctcaggaggactctgttaaggatgagtaccactcagcaagtgatgactgtgacattcacttttgaatagctcatgagcattaatacatttcattgtggatctaaacc-aaaaccaaagtgg
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1805517 800 -   2461138 GAAGTAGGAGGATAGGAGAGAGCAAGGCCACCTAGGATGATAACAGCTGAATTTCTCAACATACACTTCGAAGCCCTAGGGGTTAACTTAGAGAATCAAAAATCCCACCCACAATCCTGCCCCTAAACACCAGGGCTAGGGAACACCATGGCCCTCAGGTGATTTTATTTAGCCAGGTCTGGGAGCCACACAACGGCAGAGGGAGCAGGAAACACTATGCAAA--TAGAGGCCAGGACAGCAGGGAGG------GAC--TGTTCATGACAGAACACAGGTAAAACTATCCTTGAAAAGTGAGTGTGGAGAAACACAGATCATGCCTGAGAcctggtggattagagcactggctactggggaattgaaaggaaggggcttcaccgtgcagaggaccagaggtgccaatcttggaaacgcagaattgctgggagatggggaggcaggaacagaggaagcatcctctggagactcatgctgaaga--gaacaaatgaatgaagtaactggcagaaattagaggtcctggtagaacaaaattgaatcccacaatgagaacacacaCCATGTATGTCCCCCAAGGAAGACAATATCTCCTAAAAACTca-------------------agcacctcatatccagtaatgtgatccatgtatcaagatcgtgagaaaagattattaaacatgctaaactcagcaagacctgattcgttcatgaggaccctgttaaggattagtaccactcagcaagtgatgactgtgacattcacttttgaatagctcataagcattaatatatttaattgtggatctaaaccaaaaaccaaggtgg
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1006449 800 -   1280666 GAAGTAGGAGGATAGGAGAGAGCAAGGCCACCTAGGATGATAACAACTGAATTTCTCAACATACACTTCAAAGCCCTAGGGGTTATCTTAGAGAATCAAAAATCTCACCCATAATCCTGCCCCTAAACACCAGGGCTAGGGAACACCGTGGTCCTCAGGTGATTTTATTTAGCAGGGTCTGGGAGCCACACCACAGCAGAGGGAGCAGGAAACACTATGCAAA--TAAAGGCCAGGACAGCAGGCAGG------GGC--TGTTCATGACAGAACACAGGTAAAACTACCCTCGGAAAGTGAGTGTGGAGAAACACAGATCGTGCCTGAGACCTGGTGGATTAGAGCACTGGCTACTGGGGAATTGAAAGGAAGGGGCTTCACCATGCAGAGGACCAGAGGTGCCAATCTTGGAAACGCAGAATTGCTGGGAGATGGGGAGGCATGGACAAAAGAAGCATCCTCTGGAGACTCGTGCTGAAGA--GAACAAATGAATGGAGTAACTGGCAGAAATTAGAGGTCCTGGTAGAACAAAATAGAATCCCACAATGAGAACACACACCATGTATGTCCCCCAAGGAAGACAATATCTCCTAAAAACcca-------------------agcacctcatatccagtaatgcgatccatgtatcaagatcatgagagaagattattaaacatgctaaactcagcaagacctgattcgctcataaggactctgttaaggattagtaccactcagcaagtgatgactgtgacattcacttttgaatagctcataagcattaatatatttaattgtggatctaaaccaaaaaccaaggtgg
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             488973 800 -   1325925 GAAGTAGGAGGATAGGAGAGAGCAAGGCCACCTAGGATGATAACAGTTGAATTTCTCAACATACACTTCAAAGCCCTAGGGGTTAACTTAGAGAATCAAAAATCCCACCCACAATCCTGCCCCTAAACACCAGGGCTAGGGAACACCGTGGTCCTCAGGTGATTTTATTTAGCCGGGTCTGGGAGCCACACAATGGCAGAGGGAGCAGGAAACACTATGCAAA--TAGAGGCCAGGACAGCAGGGAGG------GGC--TGTTCATGACAGAACACAGGTAAAACTATCCTTGAAAAGTGAGTGTGGAGAAACACAGATCATGCCTGAGAcctggtggattagagcactggctactggggaattgaaaggaaggggcttcaccgtgcggaggaccagaggtgccaatcttggaaacgcagaattgctgggagatggggaggcgtggacaaaggaagcatcctctggagactcgtggtgaaga--gaacacatgaacgaagtcactggcagaaattagaggtcctggtagaacaaaatagaatcccacaatgagaacacacaCCATGTATGTCCcccaaggaagacagtatctcctaaaaactca-------------------agcacctcatatccagtaatgtgatccatgtatcaagattgtgagaaaagattattaaacatgctaaactcagcaagacctgagtcgttcatgaggaccctgttaaggattagtaccactcagcaagtgatgactgtgacattcgcttttgaatagctcatgaacattaatatatttaattgtggatctaaaccaaaaaccaaggtgg
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3728223 816 -   3775709 gaaGTAGGAGGATAAGAGAGAGCAAGTCCACCTAGGATGATGACCGCTGAATTTCTCAACGGACACTTCAAAGCCCTAGGGGTTAACTTAGAGAGTCAAAAATCCCACCCGTAACCCTGGCCCTAAACACCTGGGCTAGGGAACACTGTGGCCCTCGGGAGATTGTCTTTAGCTGGGTCTGAGAGCCACACAACTGCAGACGGAGCAGGACACACTATGCAAA--TCGAGGCCAGAACAGCAGGGCGG------GCC--TGTTCATGACAGAACACAGGAAAAACTATCCTCAGAAAGAGCGTGTGGAGAA--ACAGATCATGCCTGAGAcctggtggattacagcactggctactggggaattgaaaggaaggggctttaccgtgcagaggaccagaggtgccaatcttggaaatgcagaactgctgggagatggggaggcctggacagaggaagcatcctctggagactcgtggtgaaga--gaacacatgaacgaagtaactggcagaaattagaggtcctggaagaacaaaatagaatcccacaatgagaacatacaCCGTGTATGTCCCCCAGGGAAGAcaatatctcctaaaaactcaagaaaaatcattttgggcgagcaccttatacccagtcatgcgatccatgcatcaaggccatgagataagattattaaacatgctaaggtcagcgagacctgattccctcatgaggactctgttaaggatgagtaccactcagcaagtgatgactgtgacattcacttttgaatagctcatgagcattattatatttaattgtggatct-aaccaaaaaccaaggtgg
i colAng1.NW_012114988v1          I 8 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chr1                    107345121 1415 + 229942017 I

a score=279867.000000
s hg38.chr1_KI270711v1_random          4113 51 +     42210 gggcaagatgacaaccacagaatgtcactggcatatgtttaggttcaaata
s panTro5.chr1                    207997168 51 - 228573443 gggcaagatgacaaccacagaatgtcactggtatatgtttaggttcaaata
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208131172 51 - 229774977 gggcaagatgacaaccacagaatgtcactggtatatgtttaggttcaaata
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3795051 51 -   8455952 gggcaagatgacaaccacagaatgtcactggtatatgtttaggttcaaata
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    256931 51 +    297174 ggacaagatgacaatcacagaatgtcactggtatatgtttaggttcaaata
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103741580 51 - 225584828 ggacaagatgacaatcacagaatgtcactggtatatgtttaggttcaaata
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211811439 51 + 227556264 ggacaagatgacagtcacagaatgtcactggtatatgtttaggttcaaata
i macFas5.chr1                    I 3768 C 0
s macNem1.NW_012017688v1           11384513 51 -  14060431 ggacaagatgacagtcacagaatgtcactggtatatgtttaggttcaaata
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1806317 51 -   2461138 ggacaagatgacaatcacagaatgtcactggtatatgtttaggttcaaata
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1007249 51 -   1280666 acgcaagctggcaatcacattatgtcactggtatatgtttaggttcaaata
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             489773 51 -   1325925 ggacaagatgacaatcacagaatgtcactggtatatgtttaggttcaaata
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3729039 51 -   3775709 ggccaagAAGACAATCACAGAATGTTACTAGTGTATGTTTACGTTCAATTA
i colAng1.NW_012114988v1          C 0 C 0
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chr1                    107345121 1415 + 229942017 I

a score=15934.000000
s hg38.chr1_KI270711v1_random          4164 5 +     42210 ccatt
s panTro5.chr1                    207997219 5 - 228573443 ccatt
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208131223 5 - 229774977 cgatt
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3795102 4 -   8455952 c-att
i gorGor5.CYUI01015145v1          C 0 C 0
s ponAbe2.chr1                    107346536 4 + 229942017 -caaa
i ponAbe2.chr1                    I 1415 I 15032
s nomLeu3.chr24_GL397604_1_random    256982 5 +    297174 ctgtt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103741631 5 - 225584828 ccatt
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211811490 5 + 227556264 ctatt
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11384564 5 -  14060431 ctatt
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1806368 5 -   2461138 ccatt
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1007300 5 -   1280666 ccatt
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             489824 5 -   1325925 ctatt
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3729090 5 -   3775709 CTATT
i colAng1.NW_012114988v1          C 0 C 0
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I

a score=92587.000000
s hg38.chr1_KI270711v1_random          4169 15 +     42210 atgagaagtggcagg
s panTro5.chr1                    207997224 15 - 228573443 atgagaagtggcagg
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208131228 15 - 229774977 atgagaagtggcagg
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3795106 15 -   8455952 atgagaagtggcagg
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    256987 15 +    297174 atgagaagtggcagg
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103741636 15 - 225584828 atgagaagtggcagg
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211811495 15 + 227556264 atgagaagtggcagg
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11384569 15 -  14060431 atgagaagtggcagg
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1806373 15 -   2461138 atgagaagtggcagg
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1007305 15 -   1280666 atgagaagtggcagg
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             489829 15 -   1325925 atgagaagtggcagg
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3729095 15 -   3775709 AGGAGAAGTGGCAgg
i colAng1.NW_012114988v1          C 0 I 149
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=1592423.000000
s hg38.chr1_KI270711v1_random          4184 315 +     42210 taaaggaggtag--gaaaaagaaaacacatcatgtaactgactgtcatatggaaatatttgacgttgaaagtcataatttaaaatgtataaaccaaatattagaagTGTGTCTAGTTCAAAGGGGGGAAAACTAT--GAAACATTTTTAAT-CAATATCAAACATGAGCTACACAACCCTTCCTAAATGCCAGAGGcacacacagacacaca------------cacaca------cac----------tctcacaAAGAATATAAATATCTAGAACCAAGAAATGGAGTAAATGCATTCTGCTACATATGGTAAACATAGCCTACAAGGTGGAAGAGATTAGAAAAT
s panTro5.chr1                    207997239 325 - 228573443 taaaggaggtag--gaaaaagaaaacacatcatgtaactgactgtcatatggaaatatttgatgttgaaagtcataatttaaagtgtataaaccaaatattagaagTGTGTCTAGTTCAAAGGGGGGAAAACTAT--GAAACATTTTTAGT-CAGTATCAAACATGAGCTACACAACCCTTCCTAAATGCCAGAGGcacacacagacacaca------------cacaca------cacacacacacTCTCTCACAAAGAATATAAATATCTAGAACCAAGAAATGGAGTAAATGCATTCTGCTACATATGGTAAACATAGCCTACAAGGTGGAAGAGATTAGAAAAT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208131243 325 - 229774977 taaaggaggtag--gaaaaagaaaacacatcacgtaattgactgtcatatggaaatatttgatgttgaaagtcataatttaaagtgtataaaccaaatattagaagTGTGTCTAGTTCAAAGGGGGGAAAACTAT--GAAACATTTTTAGT-CAGTATCAAACATGAGCTACACAACCCTTCCTAAATGCCAGAGGcacacacagacacaca------------cacaca------cacacacacTCTCTCTCACAAAGAATATAAATATCTAGAACCAAGAAATGGAGTAAATGCATTCTGCTACATATGGTAAACATAGCCTACAAGGTGGAAGAGATTAGAAAAT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3795121 314 -   8455952 taaaggaggtag--gaaaaagaaaacacatcatgtaattgactgtcatatggaaatatttgacgttgaaagtcataatttaaa-cgtataaaccaaatattagaagTGTGTCTAGTTCAAAGGGGGGAAAACTAT--GAAACATTTTTAGT-CAGTATCAAACATGAGCTACACAACCCTTCCTAAATGCCAGAGGcacacacagacacaca------------cacaca------ctc----------tctcacaAAGAATATAAATATCTAGAACCAAGAAATGGAGTAAATGCATTCTGCTACATATGGTAAACATAGCCTACAAGGTGGAAGAGATTAGAAAAT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    257002 315 +    297174 ttgagaaggtag--gaaaaagaaaacacattatgtaactgactgtcatatggaaatatttgacgctgaaagttataatttaaaatgtataaaccaaatattagaagtatgtctagttcaaagggggg-gaactatcagaaacatttttagtgcaatattaaacatgagctctacaacccttcctaaatgccaaaggcacacacagccacaca------------cacaca------cac------------tcacaAAGAATACAAATAATTGGAACCAAGAAAAGTAGTAAATACATTCTGCTACATATGGTAAACATAGCCTACAATGTGGAAGAGATTAGAAAAT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103741651 310 - 225584828 taaagaaggtag--aaaaaaaaa--cacatcatgtaattgactgtcgtatggaaatatttgactttgaaagttataatttaaaacatataaaccaaatattagaagtgtgtctagttcaaaggggggaaaactatcaaaaacatttttagtgcaatattaaccatgagctatacaacccttcctaaatgccaaaggcacacacagacagaca------------------------cac----------actcacaAAGAATACAAATAACTAGAACCAAGAAATGTAGTAAATACATTCTGCTACATATGGTAAACATAGCCTACCATGTGGAAGAGATTAGAAAAT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211811510 324 + 227556264 taaagaaggtag--aaaaaaaaaaccacatcatgtaattgactgttgtatggaaatatttgacattgaaagttataatttaaaacatataaactaaatattagaagtgtgtctagttcaaaggggggaaaactaccaaaaacatttttagtgcaatattaaccatgagctatacaacccttcctaaatgccaaaggcacacacagacctaca------------cacacacacactcac----------actcacaAAGAATACAAATAACTAGAACCAAGAAATGTAGTAAATACATTCTGCTACATATGGTAAACATAGCCTACCATGTGGAAGAGATTAGAAAAT
i macFas5.chr1                    C 0 I 318
s macNem1.NW_012017688v1           11384584 324 -  14060431 taaagaaggtag--aaaaaaaaaaccacatcatgtaattgactgttgtatggaaatatttgacattgaaagttataatttaaaacatataaactaaatattagaagtgtgtctagttcaaaggggggaaatctaccaaaaacatttttagtgcaatattaaccatgagctatacaacccttcctaaatgccaaaggcacacacagacctaca------------cacacacacgctcac----------actcacaAAGAATACAAATAACTAGAACCAAGAAATGTAGTAAATACATTCTGCTACATTTGGTAAACATAGCCTACCATGTGGAAGAGATTAGAAAAT
i macNem1.NW_012017688v1          C 0 I 318
s cerAty1.NW_012001440v1            1806388 310 -   2461138 taaagaaggcag--aaaaaaaaa--cacatcatgtaattgactgtcatatggaaatatttgactttgaaagttataatttaaaacatataaaccaaatattagaagtgtgtctagttcaaaggggggaaaactatcaaaaacatttttagtgcaatattaaccatgagctatacaacccttcctaaatgccaaaggcacacacagacagaca------------------------cac----------actcacaAAGAATACAAATAACTAGAACCAAGAAATGTAGTAAATACATTCTGCTACATATGGTAAACATAGCCTACCATGTGGAAGAGATTAGAAAAT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1007320 316 -   1280666 taaagcaggtaggaaaaagaaaa--cacgacatgtaattgactgtcatatggaaatatttgacattgaaagttataatttaaaacatataaaccaaatattagaagtgtgtctagttcaaaggggggaaaactatcaaaaacatttttagtgtaatattaatcatgagctatacaacccttcctaaatgccaaaggcacacacagacacaca------------------------cacacaa------actcacaAAGAATACAAATAACTAGAACCAAGAAATGTAGTAAATACATTCTGCTACATATGGTAAACATAGCCTACGACGTGGAATAGATTAGAAAAT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             489844 310 -   1325925 taaagaaggtag--aaaaaaaaa--cacatcatgtaattgactgtcgtatggaaatatttgactttgaaagttatagtttaaaacatatcaaccaaatattagaagtgtgtctagttcaaaggggggaaaactatcaaaaacatttttagtgcaatattaaccatgagctatacaacccttcctaaatgccaaaggcacacacagacagaca------------------------cac----------actcacaAAGAATACAAATAACTAGAACCAAGAAATGTAGTAAATACATTCTACTACATATGGTAAACATAGCCTACCATGTGGAAGAGATTAGAAAAT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3729259 334 -   3775709 TAAGGGAGGTAG--AAAAAAGATAACGCAT-ATGTAATTTGCTGTCTTATGGAAATCTTTGATATTGAAAGTCATAATTTAAAATGTATAAACCAAATATTAGAAGTGTGCCTAGTTCAAAGGGGGGAAAACTATCAAAAACATTTTTAGTGCAATATTAAACATGAGCTATGCAACCCTTCCTAAATGCCAAAGGcacacacagacacacacatagacacacacacacacacacacac----------actcacaAAGAATA-AAATAATTAGAATCAAGAAATGTAGTAAATATATTCTGCTGCATATGATAAACATAGCCTACAATGTGGAAGAGATTAGAAAAT
i colAng1.NW_012114988v1          I 149 C 0
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=92037.000000
s hg38.chr1_KI270711v1_random          4499 16 +     42210 AAACAGGGAAATGGAA
s panTro5.chr1                    207997564 16 - 228573443 AAACAGGGAAATGAAA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208131568 16 - 229774977 AAACAGGGAAATGAAA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3795435 16 -   8455952 AAACAGGGAAATGAAA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    257317 16 +    297174 AAACAGGGAAATGAAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103741961 16 - 225584828 AAACAGGAAAATGAAA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211812152 16 + 227556264 aaaCAGGGAAATGAAA
i macFas5.chr1                    I 318 C 0
s macNem1.NW_012017688v1           11385226 16 -  14060431 aaaCAGGGAAATGAAA
i macNem1.NW_012017688v1          I 318 C 0
s cerAty1.NW_012001440v1            1806698 16 -   2461138 AAACAGGAAAATGAAA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1007636 16 -   1280666 AAACAGGAAAATGAAA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             490154 16 -   1325925 AAACAGGAAAATGAAA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3729593 16 -   3775709 AAACAGAGAAATGAAA
i colAng1.NW_012114988v1          C 0 C 0
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=7098.000000
s hg38.chr1_KI270711v1_random          4515 1 +     42210 A
s panTro5.chr1                    207997580 1 - 228573443 A
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208131584 1 - 229774977 A
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3795451 1 -   8455952 A
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    257333 1 +    297174 A
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103741977 1 - 225584828 A
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211812168 1 + 227556264 A
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11385242 1 -  14060431 A
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1806714 1 -   2461138 A
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1007652 1 -   1280666 A
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             490170 1 -   1325925 A
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3729609 1 -   3775709 A
i colAng1.NW_012114988v1          C 0 C 0
s rhiBie1.NW_016840746v1               2069 1 +      2292 A
i rhiBie1.NW_016840746v1          N 0 N 0
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=512638.000000
s hg38.chr1_KI270711v1_random          4516 98 +     42210 TGTTTTTATTAATTCACATCAGTACCCACCAAAACCAATCAGCATAACAAAAGATTATAACACTGAATGTAAAAAACAATCCAACAGTCCAGAGTGAT
s panTro5.chr1                    207997581 98 - 228573443 TGTTTTTATTAATTCGCATCAGTACCCACCAAAACCAATCAGCATAACAAAAGATTATAACACTGAATGTAAAAAACAATCCAACAGTCCAGAGTGAT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208131585 98 - 229774977 TGTTTTTATTAATTCGCATCAGTACCCACCAAAACCAATCAGCATAACAAAAGATTATAACACTGAATGTAAAAAACAATCCAACAGTCCAGAGTGAT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3795452 98 -   8455952 TGTTTTTATTAATTCACATCAGTACCCACCAAAACCAATCAGCATAACAAAAGATTATAACACTGAATGTAAAAAACAATCCAACAGTCCAGAGTGAT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    257334 98 +    297174 TGTTTTTATTAATTCGCATCAGTACCCATGAAAAACAATCAGCATAATAAAAGATTATAACACTGAATGTAAAAAACAATCCAGCAGTCCAGAGTGAT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103741978 96 - 225584828 TGTTTTTATTAATTCACATCAGTACCCATGAAAACCAATCAGCATAATAAAAGATTCCAACACTGAATG--AAAAACAGTCCGACAGTCCAGAGTGAC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211812169 97 + 227556264 TATTTTTATTAATTCGCATTAGTACCCATGAATACCAATCAGCATAATGAAAGATTCCAACACTGAATG-AAAAAACGGTCCAACAGTCCAGAGTGAC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11385243 97 -  14060431 TATTTTTATTAATTCGCATTAGTACCCATGAATACCAATCAGCATAATGAAAGATTCCAACACTGAATG-AAAAAACGGTCCAACAGTCCAGAGTGAC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1806715 98 -   2461138 TGTTTTTATTAATTCGCATCAGTACCCATGAAAACCAATCAGCATAATAAAAGATTCTAACACTGAATGTAAAAAACAATCCAACAGTCCAGAGCGAT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1007653 98 -   1280666 TGTTTTTATTAATTCCCATCGGTACCCATGAAAACCAATCAGCATAATAAAAGATTCCAACACTGAATGTAAAAAACAGTCCAACAGTCCAGAGCGAT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             490171 96 -   1325925 TGTTTTTATTAATTCGCATCAGTACCCATGAAAACCAATCAGCATAATAAAATATTCCAACACTGAATG--AAAAACAGTCCGACAGTCCAGAGTGAC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3729610 98 -   3775709 TCTTTTTATTAATTTGTATCAGTACCcaccaaaaccaatcagcataataaaagattctaacactgaatgtaaaaaacaatccaacagtccagagtgat
i colAng1.NW_012114988v1          C 0 C 0
e cebCap1.NW_016108146v1             259825 2225 +    407294 I
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=27823.000000
s hg38.chr1_KI270711v1_random          4614 4 +     42210 AGGC
s panTro5.chr1                    207997679 4 - 228573443 AGGC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208131683 4 - 229774977 AGGC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3795550 4 -   8455952 AGGC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    257432 4 +    297174 AGGC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103742074 4 - 225584828 GGGC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211812266 4 + 227556264 AGGC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11385340 4 -  14060431 AGGC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1806813 4 -   2461138 AGGC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1007751 4 -   1280666 AGGC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             490267 4 -   1325925 GGGC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3729708 4 -   3775709 aggc
i colAng1.NW_012114988v1          C 0 C 0
s cebCap1.NW_016108146v1             262050 4 +    407294 AGGC
i cebCap1.NW_016108146v1          I 2225 C 0
e saiBol1.JH378257                  2797948 2269 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=912475.000000
s hg38.chr1_KI270711v1_random          4618 141 +     42210 AAAAGCTTTTAATTGTATAGATTAAAA-TAACTTTGGACAAAAATTAAAACTCAGGCAGAGAA-TGTTTTTTTTTTCAACAACACACACTAGCAAAAACAAAGGCACAGTAAACATTGAGGCAGAAAGTTTCCAGCGTAGAGA
s panTro5.chr1                    207997683 141 - 228573443 AAAAGTTTTTAATTGTATAGATTAAAA-TAACTTTGGACAAAAATTAAAACTCAGGCAGAGAA-TGTTTTTTTTTTCAACAACACACACTAGCAAAAACAAAGGCACAGTAAACATTGAGGCAGAAAGTTTCCAGCGTAGAGA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208131687 140 - 229774977 AAAAGTTTTTAATTGTATAGATTAAAA-TAACTTTGGACAAAAATTAAAACTCAGGCAGAGAA-TG-TTTTTTTTTCAACAACACACACTAGCAAAAACAAAGGCACAGTAAACATTGAGGCAGAAAGTTTCCAGCGTAGAGA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3795554 140 -   8455952 AAAAGTTTTTAATTGTATAGATTAAAA-TAACTTTGGACAAAAATTAAAACTCAGGCAGAGAA-TG-TTTTTTTTTCAACAACACACACTAGCAAAAACAAAGGCACAGTAAACATTGAGGCAGAAAATTTCCAGTGTAGAGA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    257436 139 +    297174 AAAAGTTTTTAATTGTATAAATTAAAATTGACTTTGGACAAAAGTTAAAACTCAGGCAGAGAA----CTTTTTTTTCAACAACAGACACCAGCAAAAACAAAGGCACAGTAAAAATTGAGACAGAAAATTTCCAGTGTAGAGA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103742078 137 - 225584828 AAAAGTTTTTAATTGTATAGATTAAAATTAACTTTGGACAAAAATTAAAACTCAGGCAGAGAA------TTTTTTTCAACAACAGATACTAGCAAAAACAAAGGCACAGTAAAAATTGAGACAGAAAATTTCCAGGGTAGAGA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211812270 140 + 227556264 AAAAGATTTTAATTATATAGATAAAAATTAACTTTGGACAAAAATTAAAACTCAGGCAGAGAA--C-TTTTTTTTTCAACAACAGACACTAGCAAAAACAAAGGCACAGTAAAAATTGACACAGAAAATTTCCAGTGTAGGAA
i macFas5.chr1                    C 0 M 625
s macNem1.NW_012017688v1           11385344 142 -  14060431 AAAAGATTTTAATTATATAGATAAAAATTAACTTTGGACAAAAATTAAAACTCAGGCAGAGAATTT-TTTTTTTTTCAACAACAGACACTAGCAAAAACAAAGGCACAGTAAAAATTGACACAGAAAATTTCCAGTGTAGGAA
i macNem1.NW_012017688v1          C 0 I 27
s cerAty1.NW_012001440v1            1806817 137 -   2461138 AAAAGTTTTTAATTGTATAGATTAAAATTAACTTTGGACAAAAATTAAAACTCAGGCAGAGAA------TTTTTTTCAACAACAGACACTAGCATAAACAAAGGCACAGTAAAAATTGAGACAGAAAATTTCCAGGGTAGAGA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1007755 139 -   1280666 AAAAGTTTTTAATTGTATAGATTAAAATTAACTCTGGACAAAAATTAAAACTCAGGCAGAGAA----TTTTTTTTTCAACAACAGAAACCAGCAAAAACAAAGGCACAGTAAAAATTGAGACAGAAAATTTCCAAGGTAGAGA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             490271 137 -   1325925 AAAAGTTTTTAATTGTATAGATTAAAATTAACTTTGGACAAAAATTAAAACTCAGGCAGAGAA------TTTTTTTCAACAACAGACACTAGCAAAAACAAAGGCACAGTAAAAATTGAGACAGAAAATTTCCAGGGTAGAGA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3729712 140 -   3775709 aaaagtttttaattgtatagattaaaa-taactttggacaaaaattaaaactcaggcagagaa-tg-tttttttttcaacagcagacactagcaaaaagagacgcagaataaaaattgagatggaaaatttccagtgtagaga
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2800217 132 -   4070394 AAAAACTCTTAATAGTATAGATTAAAATTAACTTTGG-CAAAAATGAAAATGCAGGCAGGGAA----TTTTTTTTCCAACAACAGAAACTAGGAAAAGCAAAGATACAGTAAAAATT------GAAAATTTCCAGTATAGAGA
i saiBol1.JH378257                I 2269 C 0
s cebCap1.NW_016108146v1             262054 133 +    407294 AAAAAATTTTAATGGTATAGATTAAAATTAACTTTGG-CAAAAATGAAAATGCAGGCATGGAA-T--TTTTTTTTTCAACAACAGAAACTAGCAAAAGCAAAGATACAGTAAAAATT------GAAAATTTCCAGTATAGCGA
i cebCap1.NW_016108146v1          C 0 C 0
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=879012.000000
s hg38.chr1_KI270711v1_random          4759 151 +     42210 TATGAATAtaataatagacacaggcagggatgattaataaatgataaaatgtttacaggatgatcattggaatacaggacatttctaattttgaaaaccaccctcccaaatacttcattataagtaaggtgtctctaaaagggacagatct
s panTro5.chr1                    207997824 151 - 228573443 TATGAATAtaataatagacacaggcagggatgattaataaatgataaaatgtttagaggatggtcactggaatacaggacatttctacttttaaaaaccactctcccaaatacttcatcataagtaaggtgtctctaaaagggacagatct
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208131827 151 - 229774977 TATGAATAtaataatagacacaggcagggatgattaataaatgataaaatgtttagaggatggtcactggaatacaggacatttctacttttaaaaaccactctcccaaatacttcatcataagtaaggtgtctctaaaagggacagatct
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3795694 151 -   8455952 TATGAATAtaataatagacacaggcagggatgattaataaatgataaaatgtttagaggatgatcattggaatacaggacatttctacttttaaaaaccactctcccaaatacttcattataagtaaggtgtctctaaaagggacagatct
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    257575 151 +    297174 TATGAATCtaatgatagatacaggcggggatgattaataaatgataaaatgtttagaggatgatcattagaatacaggacatttatacttttaaaaaccactttcctaaatacttcattataagtaaggtgtctctaaaagggacagatct
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103742215 150 - 225584828 TATGAATCtaataatagacataggcagggatgattaataaatgataaaatgtttagagcatgatcattagaatacaggacacttata-ttttaaaaaccactttcccaaatacttcattataaggaaggtatctctaaaagggacagatct
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11385513 151 -  14060431 TATGAATCtaacagtagacacagacagggatgattaataaatgataaaatgtttagaggatgatcattagaatacaggacacttatacttttaaaaaccactttcccaaatacttcattacaaataaggtatctctaaaagggacagatct
i macNem1.NW_012017688v1          I 27 C 0
s cerAty1.NW_012001440v1            1806954 150 -   2461138 TATGAATCtaataatagacataggcaaggatgattaataaatgataaaatgtttagagcatgatcattagaatacaggacacttata-ttttaaaaaccactttcccaaatacttcattataaggaaggtatctctaaaagggacagatct
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1007894 151 -   1280666 TATGAATCtaataatagacacaggcagggatgattaataaatgataaaatgtttagaggatgatcattagaatacaggacacttacactttcaaaaaccattttcccaaatatttcattataagtaaggtatctctaaaagggacagatct
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             490408 150 -   1325925 TATGAATCtaataatagacataggcagggatgattaataaatgataaaatgtttagagcatgatcattagaatacaggacacttata-ttttaaaaaccactttcccaaatacttcattataaggaaggtatctctaaaagggacagatct
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3729852 151 -   3775709 tatgaatataataatagacacaggcagggaagattaataaatgataaaatgtttagaggatgatcattggaatacataacgtttatacctttacaaaccactttcccaaatacttcattgtaagtaaggtgtctctaaaagcgacagatct
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2800349 148 -   4070394 TATAAATACCATAATTGACACTGCCAGGGATGATTAATG---AATAAAATGTTTAGGGGATGATCGTTTGAACACTGGATATTAACACTTTTGAAAATGATTTTTCCAATTACTTCAGTATCAATAAGGCGTCTCTGAAAGGTACAAATCT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             262187 151 +    407294 TATAAATATAATAACTGGCACAGCTGGGGATGATTAACGAATAATAAAATGTTTAGGGGATGATCATCTGAATCCAGGATATTAATACTTTTTAAAACCATTTTTCCAATTACTTCAGTATAAATAAGGTGTCTCTGAAAGGTACAGATCT
i cebCap1.NW_016108146v1          C 0 I 227
e macFas5.chr1                    211812410 625 + 227556264 M
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=20262.000000
s hg38.chr1_KI270711v1_random          4910 4 +     42210 ccta
s panTro5.chr1                    207997975 4 - 228573443 ccta
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208131978 4 - 229774977 ccta
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3795845 4 -   8455952 ccta
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    257726 4 +    297174 ccta
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103742365 4 - 225584828 ccta
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11385664 4 -  14060431 ccta
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1807104 4 -   2461138 ccta
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1008045 4 -   1280666 ccta
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             490558 4 -   1325925 ccta
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3730003 4 -   3775709 ccta
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2800497 4 -   4070394 GGTA
i saiBol1.JH378257                C 0 I 1120
e macFas5.chr1                    211812410 625 + 227556264 M
e cebCap1.NW_016108146v1             262338 227 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=90737.000000
s hg38.chr1_KI270711v1_random          4914 22 +     42210 gacccctccttaaccaagtaac
s panTro5.chr1                    207997979 18 - 228573443 gacccctccttaac----taac
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208131982 18 - 229774977 gacccctccttaac----taac
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3795849 22 -   8455952 gacccctccttaaccaagtaac
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    257730 22 +    297174 gacccctccttaaccaagtaac
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103742369 22 - 225584828 gacccctctttaaccaagtaac
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11385668 22 -  14060431 gacccctctttaaccaagtaac
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1807108 22 -   2461138 gacccctctttaaccaagtaac
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1008049 22 -   1280666 gacccctctttaaccaagtaac
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             490562 21 -   1325925 gacccctctttaaccaa-taac
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3730007 22 -   3775709 gacccctccttaaccaagtaac
i colAng1.NW_012114988v1          C 0 C 0
e macFas5.chr1                    211812410 625 + 227556264 M
e cebCap1.NW_016108146v1             262338 227 +    407294 I
e saiBol1.JH378257                  2800501 1120 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=388435.000000
s hg38.chr1_KI270711v1_random          4936 78 +     42210 cagtcctgatatcatgataatgctgatggacaaactagaccttctctgcccgc----agatgggctaaggttggaaactcac
s panTro5.chr1                    207997997 78 - 228573443 cagtcctgatatcatgataatgctgatggacaaactagaccttctctgcccac----agatgggctgaggttggaaactcac
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208132000 78 - 229774977 cagtcctgatatcatgataatgctgatggacaaactagaccttctctgcccac----agatgggctgaggttggaaactcac
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3795871 78 -   8455952 cagtcctgatatcatgataatgctgatggacaaactagaccttctctgcccac----agatgggctgaggttggaaactcac
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    257752 78 +    297174 cagtcctgacatcatgataatggtgatggacaaactagaccttctctgcccgc----agatgggctgaggttggaaactcac
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103742391 78 - 225584828 ctgtcctgatatcatgatcatggtgatggacaaactagaccttctctgcctgc----agatgggctgaggttggaaactcac
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11385690 76 -  14060431 ctgtcctgatatgatgataatggtgatgaacaaactagaccttctctgcccgc----agatgggctgaggttggaaa--cac
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1807130 78 -   2461138 ctgtcctgatatcatgatcatggtgatggacaaactagaccttctctgcctgc----agatgggctgaggttggaaactcac
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1008071 78 -   1280666 ctgtcctgatatcatgataatggtgatggacaaactagaccttctctgcctgc----agatgggctgaggttggaaactcac
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             490583 78 -   1325925 ctgtcctgatatcatgatcatggtgatggacaaactagatcttctctgcctgc----agatgggctgaggttggaaactcac
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3730029 82 -   3775709 cagtcctgatgtcacgataatggtggtggacaaactagaccttctatgcccgcagatagataggctgaggttggaaactcac
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2801621 66 -   4070394 CAGTCCTGGCATCACAATCATGGCGGGAGACACACGGGACCTTCTCTGCCTGC----AGATGGG-TCAGGT-----------
i saiBol1.JH378257                I 1120 C 0
e macFas5.chr1                    211812410 625 + 227556264 M
e cebCap1.NW_016108146v1             262338 227 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=2228832.000000
s hg38.chr1_KI270711v1_random          5014 368 +     42210 agcattgtctctgcagtgttcccggcaaaacgtttaggctgaatttaatcatgaagacattttcagacaacttcagaatgtagatcattgagccagagagctgacctgtcctctataaacaagtccatgtcaccaccatcaatgacaacaacaaaaagatgaggaaatatttggggttcaaaataactaaagaaaTGCAGCTATATTATCTTTTTAC--TTTTTTTGAACCCAAAATATCTCTTCTCCTTTTTGTTGTGTGATTTGTGGTGATATGGACTATGTGAAGGAGACAGGTCAGTTGTCCTGCTCAGTGTTCTACATTCTGCAGTTGTCTGGTAATTACCTC---CTATGAAACTCAGGCTAAGCGT
s panTro5.chr1                    207998075 367 - 228573443 agtatcgactctgtagtgttcttgatgaaacgtttaggctgaatttaatcatgaagacattttcagacaacttcagaatgtagaccattgagccagacagctgacctgtcctctacaaataagtccatgtcaccacaatcaatgacaacaacaaaaagatgaggaaatatttggggttcaaaataactaaagaaaTGTAGCTACATTATCATTT-AC--TTCTTCTGAACCCAAAATATCTCTCCTCCTTTTTGTTGTGTGATTCGTGGtgacgtggactgtgtgaaggagacaggtcagttgtcctgctcagtgttctacattctgcagttgtctggtgattacctc---ctatgaaactcaggctaagcat
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208132078 367 - 229774977 agtatcgactctgtagtgttcttgatgaaacgtttaggctgaatttaatcatgaagacattttcagacaacttcagaatgtagaccattgagccagacagctgacctgtcctctacaaataagtccatgtcaccacaatcaatgacaacaacaaaaagatgaggaaatatttggggttcaaaataactaaagaaaTGTAGCTACATTATCATTT-AC--TTCTTCTGAACCCAAAATATCTCTCCTCCTTTTTGTTGTGTGATTCGTGGtgacgtggactgtgtgaaggagacaggtcagttgtcctgctcagtgttctacattctgcagttgtctggtgattacctc---ctatgaaactcaggctaagcat
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3795949 365 -   8455952 agtatcgactctgtagtgttcttgacaaaa-gtttaggctgaatttaatcatgaagacattttcagacaacttcagaatgtagaccattgagccagacagctgacctgt-ctctacaaataagtccatgtcaccacaatcaatgacaacaacaaaaagatgaggaaatatttggggttcaaaataactaaagaaaTGTAGCTACATTATCATTT-AC--TTCTTCTGAACCCAAAATATCTCTCCTCCTTTTTGTTGTGTGATTCGTGGTGACGTGGACTGTGTGAAGGAGACAGGTCAGTTGTCCTGCTCAGTGTTCTACATTCTGCAGTTGTCTGGTGATTACCTC---CTATGAAACTCAGGCTAAGCGT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    257830 370 +    297174 agcattgactctgcagtgttcctggcaaaacgtttaggctgaatttaatcatgaagacattttcagacaacttcagaaagtagactattgagccagacagctgatctgtcctctacaaacaagtccatgtcaccacaatcaatgacagcaacaaaaagatgaggaaatatttggggttcaaaataactaaagaaaTGTAGCTACATTATCTTTTTACTTTTTTTTTGAACCCAAAATGTCTCTTCTCCTTTTTGTTGTGTGATTCGTGGTGACATGGACTGTGTGAAGGAGATAGGTCGGTTGTCCTGCTCAGTGTTCTACATTATGCAGTTGTCTGGTGATTACCTC---CTATGAAACTCAGGCTAAGCGT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103742469 368 - 225584828 agcattgactttgcagtgttcccaacaaaacgtttaggctgaatttaatcatgaagacattttcagacaacttcagaatgtagatcattgagccaaacagctgacctgtcctctacaaacaagtccatgtcaccacaatcaatgacaacaacaaaaagatgaggagatattttgggttcaaaataactgaagaaaTGTAGCTACATTATCTTTTTAC--TTTTTCTGAACCCAAAGTATCTCTTTTCCTTTCTGTTGTGTGATTCATGGTGACATGGACTGTGTGAAGGAGACAGGTCAGTTGCCCTGTTCAGTGTTCTACATTCTGCAGTTGTCTGGTGATTACCTC---CTATGAAACCCACGTTAAGCGT
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11385766 369 -  14060431 agcgttgactctgcagtgttcctggcaaaacgtttaggctgaatttaatcacgaggacattttcagacaacttcagaatgtagatcattgagccagacagctgacctgtcctctacaaacaagtccttgtcaccaccatcgataacaacaacaaaaagatgaggaaatctttgggattcaaaataactgaagaaaTGTAGCTACATTATCTTTTTAC-TTTTTTTTGAACACAAAATATCTCTTCCCCTATTTGCTATGTGATTCGTGGTGACATGGACTACGtgaagaagacaggtcagttgtcctgctcagtgttctacattctgcagttgtccggtgattacctc---ctatgaaactcaggctaagcgt
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1807208 369 -   2461138 agcattgactttgcagtgttcccaacaaaacatttaggctgaatttaatcatgaagacattttcagacaacttcagaatgtagatcattgagccagacagctgacctgtcctctacaaacaagtccttgtcaccacaatcaatgacaacaacaaaaagatgaggagatattttgggttcaaaataactgaagaaaTGTAGCTACATtatctttttac-ttttttttgaacccaaagtatctcttttcctttctgttgtgtgattcatggtgacatggactgtgtgaaggagacaggccagttgccctgttcagtgttctacattctgcagttgtctggtgattacctc---ctatgaaactcacgctaagcgt
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1008149 368 -   1280666 agcattgactctgcagtgttcctggcaaaacgcttaggctgaatttaatcatgaagacattttcagacaacttcagaatgtagatcattgagccaaacagctgacctgtcctctacaaacaagtccatgtcaccacaatcaatgacaacaacaaaaagatgaggagatactttgggttcaaaataactgaagaaaTGTAGCTACATTATGTTTTTAC--TTTTTTTGAACCCAAAATATTTCTTTTCCTTTCTGTTGTGTGATTCATGGTGACATGGACTGTGTGAGGGAGACAGGTCAGTTGTCCTGCTCAGTGTTCTACATTCTGCAGTTGTCTGGTGATTACCTC---CTATGAAACTCAGGCTAAGCGT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             490661 368 -   1325925 agcattgactctgcagtgttcccaacaaaacgtttaggctgaattgaatcatgaagacattttcagacaacttcagaatgtagatcattgagccaaacagctgacctgtcctctacaaacgagtccatgtcaccacaatcaatgacaacaacaaaaagatgaggagatattttgggttcaaaataactgaagaaaTGTAGCTACATTATCTTTTTAC--TTTTTTTGAACCCAAAGTATCTCTTTTCCTTTGTGTTGTGTGATTCATGGTGACATGGACTGTGTGAAGGAGACAGGTCAGTTGCCCTGTTCAGTGTTCTACATTCTGCAGTTGTCTGGTGATTACCTC---CTATGAAACTCAGGCTAAGCGT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3730111 364 -   3775709 agtgttgaccctgcagtgttcctggcaaaacgtttaggctgaatggaatcatgaagacattttcagacaacttcagaatgtagatcattgagccagacagctgatctgtcctctacaaacgagttcatgtcaccacaatcaatgacaacaacaaaaacatgaggaaatattTGGGGTTCAAAATA----CAGAAatgtagctacaatatctttttac--tttttttgaacccaaaatatctcttctcctttttgttgtgtgatttctggtgacatggactgtgtgaaggagacaggccagctgtcctgctcagtgttctacattctgcagttgtctggtgattacctc---ctatgaaactcaggctaagcgt
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2801687 370 -   4070394 AGCATTGACCctgcagtgttcccggaaaaacacttaggctgaatttaatcttgaggacattttcagacaacttcagagcgtggagcattgagccagacagctgacctgtcgtctgcaaacaagaccatgtcaccaccatcaatgacaacaacaaagcgctgaggagacactttgggttcaaaagaactagagTAATGGAGCTGCATTACCTTTTGAC--TCTTTTTCAACCCAAAATGTCTCTTCT-CTTTTAGTTGTGTGACCTGTGGTGACATGGGCTGTCTGAAGGAGACAGGTCAGTCGTGCTGCTCACTGGTCTACATTCTGAAGTTGTCTGGAGATTACCTCAGGCTATGAGACTCAGGCTAAGTGT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             262565 344 +    407294 AGCATTGACCctgcagtgttcccggaaaaacacttaggctgaatttaatcataaggacattttcagacaacttcagagtgtagaccactgagccagacagctgacatgtcctctacaaacaagctcatgtcaccaccatcaatgacagcaacaaaaaggtgaggagacactttgggttcaaaagaactaaagCAATGTAGCTACATTATCTTTTGAC--TCTTTTTCAACCCAAAATGTCCTTTCTCCTTTTAATTGTGTGATTTGT---------------------------GGTCAGTCGTGCTGCTCACTGCTCTACATTGTGAAGTTGTCTGGAGATTACCTCAGGCTATGAAACTCAGGCTAAGTGT
i cebCap1.NW_016108146v1          I 227 C 0
e macFas5.chr1                    211812410 625 + 227556264 M
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=235459.000000
s hg38.chr1_KI270711v1_random          5382 30 +     42210 TTTCTGCAAGAACATGGCGTTGTTCATATT
s panTro5.chr1                    207998442 30 - 228573443 tttctgcaagaacaTGGCATTGTTCATATT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208132445 30 - 229774977 tttctgcaagaacaTGGCATTGTTCATATT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3796314 30 -   8455952 TTTCTGCAAGAACATGGCATTGTTCATATT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258200 30 +    297174 TTTCTGCAAGAACATGGCATTGTTCACATT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103742837 30 - 225584828 TTTCTACAAGAACATGGCATTGTTCATATT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211813060 30 + 227556264 TTTCTGCAAGAACATGGCATTGTTCATATT
i macFas5.chr1                    M 625 C 0
s macNem1.NW_012017688v1           11386135 30 -  14060431 tttctgcaagaacaTGGCATTGTTCATATT
i macNem1.NW_012017688v1          C 0 I 1079
s cerAty1.NW_012001440v1            1807577 30 -   2461138 tttctacaagaacaTGGCATTGTTCATATT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1008517 30 -   1280666 TTTCTGCAAGAACATGGCATTGTTCATATT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             491029 30 -   1325925 TTTCTGCAAGAACATGGCATTGTTCATATT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3730475 30 -   3775709 tttctgcaagaacaTGGCATTGTGCATATT
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802057 30 -   4070394 TTTCAGCAAGAACATGGCGTTGTTCATACT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             262909 30 +    407294 TTTCAGCAAGAACATGGTGTTGTTCATACT
i cebCap1.NW_016108146v1          C 0 C 0
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=58871.000000
s hg38.chr1_KI270711v1_random          5412 8 +     42210 CTGCACCG
s panTro5.chr1                    207998472 8 - 228573443 CTGCACCG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208132475 8 - 229774977 CTGCACCG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3796344 8 -   8455952 CTGCACCG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258230 8 +    297174 CTGCACTG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103742867 8 - 225584828 CTGTACCG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211813090 8 + 227556264 CTGCACtg
i macFas5.chr1                    C 0 I 1323
s macNem1.NW_012017688v1           11387244 8 -  14060431 CTGCACCG
i macNem1.NW_012017688v1          I 1079 C 0
s cerAty1.NW_012001440v1            1807607 8 -   2461138 CTGTACCG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1008547 8 -   1280666 TTGTACCG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             491059 8 -   1325925 CTGTACTG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3730505 8 -   3775709 CTGCACCG
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802087 8 -   4070394 CTGCACTG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             262939 8 +    407294 CTGCACCG
i cebCap1.NW_016108146v1          C 0 C 0
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=161980.000000
s hg38.chr1_KI270711v1_random          5420 24 +     42210 GCAGAGTCCTGGGTGACATGCTGT
s panTro5.chr1                    207998480 24 - 228573443 GCAGAGTCCCGGGTGACATGCTGT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208132483 24 - 229774977 GCAGAGTCCCGGGTGACATGCTGT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3796352 24 -   8455952 GCAGAGTCCCAGGTGACATGCTGT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258238 24 +    297174 GCAGATTCCCAGGTGACATGCTGT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103742875 24 - 225584828 GCAGAGTCCTGGGTGACATGCTGT
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11387252 24 -  14060431 GCAGAGTCCTGGGTGACATGCTGT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1807615 24 -   2461138 GCAGAGTCCTGGGTGACATGCTGT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1008555 24 -   1280666 GCAGAGTCCTGGGTGACATGCTGT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             491067 24 -   1325925 GCAGAGTCCTGGGTGACATGCTGT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3730513 24 -   3775709 GCAGAGTCCCGGGTGACGTGCTGT
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802095 24 -   4070394 GCAGAGTCCCAGGTGACATGTTGT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             262947 24 +    407294 ACAGAGTCCCAGGTGACATGTTGT
i cebCap1.NW_016108146v1          C 0 C 0
e macFas5.chr1                    211813098 1323 + 227556264 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=12606.000000
s hg38.chr1_KI270711v1_random          5444 2 +     42210 CT
s panTro5.chr1                    207998504 2 - 228573443 CT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208132507 2 - 229774977 CT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3796376 2 -   8455952 CT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258262 2 +    297174 CT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103742899 2 - 225584828 CT
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11387276 2 -  14060431 CT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1807639 2 -   2461138 CT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1008579 2 -   1280666 CT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             491091 2 -   1325925 CT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3730537 2 -   3775709 CT
i colAng1.NW_012114988v1          C 0 C 0
s cebCap1.NW_016108146v1             262971 2 +    407294 CT
i cebCap1.NW_016108146v1          C 0 I 3
e macFas5.chr1                    211813098 1323 + 227556264 I
e saiBol1.JH378257                  2802119 0 -   4070394 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=793244.000000
s hg38.chr1_KI270711v1_random          5446 170 +     42210 CCTGCCAGCGGCTCCTGACTCCTGTTCTCTACAGGAT-GGAATCGAGAGGAGCAGGGCTAAGGCCTCCCAATGCTGTTTGTCCATCTAGCTGTGGTCTTCCTAAGTACTGACACCAATTGGAGGCTGAAGGACTGTGGCTTCTCTAACCAAAGGAGCCTAGCGGGTTAACA
s panTro5.chr1                    207998506 170 - 228573443 CTTGCCAGCGGCTCCTGACTCCTGTTCTTTACAGGAT-GGAATTGAAAGGAGCAGGGCTAAGGCCTCCCAATGCTGTTTGTCCGTCTAGCTGTGGTCTTCCTAAGTATTGATATCAATTGGAGGCTGAAGGACTATGGCTTCTCTACTCAAAGGAGCCTAGTGGGTTAACA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208132509 170 - 229774977 CTTGCCAGCGGCTCCTGACTCCTGTTCTTTACAGGAT-GGAATTGAAAGCAGCAGGGCTAAGGCCTCCCAATGCTGTTTGTCCGTCTAGCTGTGGTCTTCCTAAGTATTGATATCAATTGGAGGCTGAAGGACTATGGCTTCTCTACTCAAAGGAGCCTAGTGGGTTAACA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3796378 170 -   8455952 CTTGCCAGCGGCTCCTGACTCCTGTTCTTTACAGGAT-GGAATTGAGAGGAGCAGGGCTAAGGCCTCTCAATGCTGTTTGTCCATCTAGCTGTGGTCTTCCTAAGTATTGATATCAATTGGAGGCTGAAGGACTGTGGCTTCTCTACTCAAAGGAGCCTAGTGGGTTAACA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258264 171 +    297174 CCTGCCATTGGCTCCTGACTCCTGTTCTCTACAGGATAGGAATTGAGAAGAGCATGGCTACAGCCTCTCAATGCTGTTTGTCCATCTAGCTGTGGTCTTCCTAAGTATTGATATCAATTGGAGGCTGAAGGACTGTAGCTTCTCTCATCAAAGCAGCCTAGTGGGTTAACA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103742901 170 - 225584828 CCTGCCAGCGGCTCCTGACTCCTGTTCTCTACAGGAT-GGAATTGAGAGGAGCAGGGCTGAGGCCTCTCAATGCTGTTTGTCCATCTAGCTGTGGTCTTCCTAAGTATCGATATCAACTGGAGGCTGAAGGACTGTGGCTTCTCTAACCAAAGGAGCCTAGTGGGTTAACA
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11387278 170 -  14060431 CCTGCCAGCGGCTCCTGACTCCTATTCTCTACAGGAT-GGAATTGAGAGGAGCAGGGCTGAGGCCTCTCAATGCTGTTTGTCCATCTAGCTGTGGTCTTCCTAAGTATCTCTATCAACTGGAGGCTGAAGGACTGTGGCTTCTCTAGCCAAAGGAGCCTAGTGGGTTAACA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1807641 170 -   2461138 CCTGCCAGCGGCTCCTGACTCCTGTTCTCTACAGAAT-GGAATTGAGAGGAGCAGGACTGAGGCCTCTCAATGCTGTTTATCCATCTAGCTGTGGTCTTCCTAAGTATTGATATCAACTGGAGGCTGAAGGACTGTGGCTTCTCTAACCAAAAGAGCCTAGTGGGTTAACA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1008581 170 -   1280666 CCTGCCAGCAGCTCCTGACTCCTGTTCTCTACAGGAT-GGAATTGAGAGGGGCAGGGCTGAGGCCTCTCAATGCTGTTTATCCATCTAGCTGTGGTCTTCCTAAGTATCAATGTCAACTGGAGGCTGAAGGACTGTGGCTTCTCCAACCAAAGGAGCCTAGTGGGTTAACA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             491093 170 -   1325925 CCTGCCAGCGGCTCCTGACTCCTGTTCTCTACAGGAT-GGAATTGAGAGGAGCAGGGCTGAGGCCTCTCAATGCTGTTTGTCCATCTAGCTGTGGTCTTCCGAAGTATTCATAGCAATTGGAGGCTGAAGGACTGTGGCTTCTCTAACCAAAAGAGCCTAGTGGGTTAACA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3730539 170 -   3775709 CCTGCCAGCGGCTCCTGGCTCCTGTTCTTTACAGGAT-GGAATTGAGAGGAGCAGGGCTAAGGGCTCTCCACGCTGTTTGTCCATCTAGCTGTGGTCTTCCTACGTATTGATAGCAATTGGAGGCTGAAGGACTGTGGCTTCTCTAACCAAAGGAGCCTAGTGGGTTAACA
i colAng1.NW_012114988v1          C 0 C 0
e macFas5.chr1                    211813098 1323 + 227556264 I
e cebCap1.NW_016108146v1             262973   3 +    407294 I
e saiBol1.JH378257                  2802119   0 -   4070394 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=2228270.000000
s hg38.chr1_KI270711v1_random          5616 401 +     42210 ATTGTCAAGAGCAGTTGGTGGTTCTGAAATACAATCCTCAGCCAAGGAT-CCCTCCTGTGTTAAAGATGGATCAGCTAAAACAATTCAACACTGAAGATACAAAGAATGAGGTTAGGTTCATTGAAACCAGGGTAACACCTTTGGATGAGCTAAACACAAAGATGACACTGACCTTGAGCAGGTATAGAAGCTCAGAGACATGACTGCAAAATGAAATCCCTGAGGAACTTTGTAGCTACCCAGAGATAAGTGG--------TTCAAATTAAAATGTCTGACTGATCACTCCCGGCATGTGCTGCACAGTTATGTGAACGTGTCACACCTAACTTGGGTCCATTGTCTTCAGACTGAGCACAGGTTGCCACTGGCATGGTCTGAGAATAGGAATAGAGCCATGCCCACTG
s panTro5.chr1                    207998676 401 - 228573443 ACTGTCAAGAGCAGTCAGTGGTTCTGAAATACAATCCTCAGCCAAGGAT-CCCTCCTGTGTTACAGATGGATCAGCTAAAACAAACCAACACTGAAGATACAAAGAATGAGGTTAGGTTCATTGAAACCAGGGTAACACCTTTGGATGAGCTAAACACAAAGATGACACTGACCTTGAGCAGGTATAGAAGCTCAGAGACATGCCTGCAAAATGAAACCCCTGAGGAACTTTGTAGCTACCCAGAGATATCTGG--------TTCAAATTAGAATGTCTGGCAAATCACTCCCAGCATGTGCTACATAGTCGTGTGAACGTGTCACACCTAACTTGGGTCCAATGTCTTCAGACTGAGCACAGGTGGCCAGTGGCATGGTCTGAGAATAGGAATAGAGCCATGCCCACTT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208132679 401 - 229774977 ACTGTCAAGAGCAGTCAGTGGTTCTGAAATACAATCCTCAGCCAAGGAT-CCCTCCTGTGTTACAGATGGATCAGCTAAAACAAACCAACACTGAAGATACAAAGAATGAGGTTAGGTTCATTGAAACCAGGGTAACACCTTTGGATGAGCTAAACACAAAGATGACACTGACCTTGAGCAGGTATAGAAGCTCAGAGACATGCCTGCAAAATGAAACCCCTGAGGAACTTTGTAGCTACCCAGAGATATCTGG--------TTCAAATTAGAATGTCTGGCAAATCACTCCCAGCATGTGCTACATAGTCGTGTGAACGTGTCACACCTAACTTGGGTCCAATGTCTTCAGACTGAGCACAGGTGGCCACTGGCATGGTCTAAGAATAGGAATAGAGCCATGCCCACTT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3796548 400 -   8455952 ACTGTCAAGAGCAGTCAGTGGTTCTGAAATACAATCCTCAGCCAACGAT-CCCTCCTGTGTTACAGATGGATCAGCTAAAACAAACCAACACTGAAGATACAAAGAATGGGGTTAGGTTCAATGAAACCAGGGTAACACCTTTGGATGAGCTAAACACAAAGATGACACTGACCTTGAGCAGGTATAGAAGCTCAGAGACATGCCTGCAAAATGAAACCCCTGAGGAACTTTGTAGCTACCCAGAGACATCTGG--------TTCAAATTAGAATGTCTGGCAGATCACTCCCGGCATGTGCTACATAGTCG-GTGAACGCGTCACACCTAACTTGGGTCCAATGTCTTCAGACTGAGCACAGGTGGCCACTGGCATGGTCTGAGAATAGGAATAGAGCCATGCCCACTT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258435 401 +    297174 ATTGTCAAGAGCAGTCAGTGGTTCTGAAATATAATCCTCAGCCAAGGAT-CCCTCCTGTGTTACAGAAGGATCAGCTAAAACAAACCAACACTGAAGATACAAAGAATGGGGTTAGGTTCACTGAAACTAGGGTAACATCTTTGGATGAGCTAAACACAAAGATGACACTGACCTTGAGCAGGTATAGAAGGTCAGAGACATGCCTGCAAAATGAAATCCCTGAGGAACTTTGTAGCTACCCAGAGATATATGG--------TTCAATTTAGAATGTCTGACAGATCAGTCCTGGCATGTGCTGCACAGTTATGTAAATGTGTCACACCTAACTTGGGTCCAATGTCTTCAGACTTAGCACAGGTTGCCACTGGCATGGTCTGAGAATAGGAATAGAGCCATGCCCAGTG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103743071 409 - 225584828 ACTGTCAAGAGCAGTCAGTGGTTGTGAAATACAATCCTCAGCCAAGGAT-ACCTCCTGTGTTACAGATGGATCCGCTAAAACAAGCCAACACTGAAGATAGAAAGAATGGGGTTAGGTTCATTGAAACCAGGGTAACACCTTTGGATGAGCTAAACACAAAGATGACACTAACCTTGAGCAGGTACAGAAGCTCAGAGACATGCTGGCAAAATGAAATCCCTGAGGAACTTTGTAGCTACCCAGAGATATGTGGGTATATCTTTCAAATTAGAATGTCTGACAGATCACTCCCGGCATGTGCTGCATAGTTATGTAAACGTGTCACACCTAACTTGGGTCCAATGTCTTCAGACTGAGCACAGGTTGCCACTGGCATGGTCTGAGAATAGGAATAGGGCCATGCCCACTG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211814421 409 + 227556264 ACTGTCAAGTGCAGTCAGTGGTTCTGAAATACAATCCTCAGCCAAGGAT-CCCTCCTGTGTTACAGATGGATCAGCTAAAACAAGCCAACACTGAAGATAGAAAGAATGGGGTTAGGTTCATTGAAACCAGGACAACACCTTTGGATGAGCTAAACACAAAGATGACACTGACCTTGAGCAGGTGTAGAAGCTCAGAGACATGCCGGCAAAATGAAATCCCTGAGGAACTTTGTAGCTACCCAGAGAGATGTAGGTATATCTTTCAAATTAGAATGTCTGACACATCACTCCCGGCATGTGCTGCATAGTTATGTGAACGTGTCACACCCAACTTGGGTCCAATGTCTTCAGACTGAGCACAGGTTGCCACTGGCATGGTCTGAGAGTAGGAATAGGGCCATGCCCACTG
i macFas5.chr1                    I 1323 I 8767
s macNem1.NW_012017688v1           11387448 408 -  14060431 ACTGTCAAGTGCAGTCAGTGGTTCTGAAATACAATCCTCAGCCAAGGAT-CCCTCCTGTGTTACAGATGGATCCGCTAAAACAAGCCAACACTGAAGATAGAAAGAATGGGGTTAGGTTCATTGAAACCAGGAC-ACACCTTTGGATGAGCTAAACACAAAGATGACACTGACCTTGAGCAGGTGTAGAAGCTCAGAGACATGCCGGCAAAATGAAATCCCTGAGGAACTTTGTAGCTACCCAGAGAGATGTAGGTATATCTTTCAAATTAGAATGTCTGACACATCACTCCCAGCATGTGCTGCATAGTTATGTGAACGTGTCACACCCAACTTGGGTCCAGTGTCTTCAGACTGAGCACAGGTTGCCACTGGCATGGTCTGAGAGTAGGAATAGGGCCATGCCCACTG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1807811 409 -   2461138 ACTGTCAAGAGCAGTCAGTGGTTCTGAAATACAATCCTCAGCCAAGGAT-CCCTCCTGTGTTACAGATGGATCAGCTAAAACAAACCAACACTGAAGATACAAAGAATGGGGGGAGGTTCATTGAAACCAGGGTAACACCTTTGGATGAGCTAAACACAAAGATGACACTAACCTTGAGCAGGTATAGAAGCTCAGAGACATGCCCGTAAAATGAAATCCCTGAGGAACTTTGTCGCTACCCAGAGAGATGTGGGTATATCTTTCAAATTAGAATGTCTGACAGATCACTCCCGGCATGTGCTGCATAGTTATGTAAACGTGTCACACCTAACTTGGGTCCACTGTCTTCAGACTGAGCACAGGTTGCCACTGGCATGGTCTGAGAATAGGAATAGGGCCATGCCCACTG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1008751 407 -   1280666 ACTGTCAAGAGCAGTCAGTGGTTCTGAAATATAATCCTTAGCCAAGGAT-CCCTCCTGTGTTACAGATGGATCCGCTAAAACAAGCCAACACTGAAGATAGAAAGAATGGGGTTAGGTTCATTGAAACCAGGACAACACCTTTGGATGAGCTAAACACAAAGATGACACTGACCTTGAGAAGGTATAGAAGCTCAGAGACATGCCGGCAAAATGAAATCCCTGAGGAACTTTGTAGCTACCTAGAGAGATGTCGGTATATCTTTCAAATTAGAATGTCTGACAGATCACTTCCGGCATATGCTGCACAGTTATGTGAATGTGTCACACCTAACTTGGGTCCGATGTCTTCAGACTGAGCACAGGTTGCCACTGGCATGGTCT--GAATAGGAATAGGGCCATGCCCACTG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             491263 410 -   1325925 ACTGTCAAGAGCAGTCAGTGGTTCTGAAATACAATCCTCAGCCAAGGATACCCTCCTGTGTTACAGATGGATCAGCTAAAACAAGCCAACACTGAAGATAGAAAGAATGGGGTTAGGTTCATTGAAACCAGGACACCACCTTTGGATGAGCTAAACACAAAGATGACACTAACCTTGAGCAGGTATAGAAGCTCAGAGACATGCCGGCAAAATGAAATCCCTGAGGAACTTTGTAGCTACCCAGAGATATGTGGGTATATCTTTCAAATTAGAATGTCTGACAGATCACTCCCGGCATGTGCTGCATAGTTATGTAAACGTGTCACACCTAACTTTGGTCCAATGTCTTCAGACTGAGCACAGGTTGCCACTGGCATGGTCTGAGAATAGGAATAGGGCCATGCCCACTG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3730709 399 -   3775709 ATTGTCAAGAGCAGTCAGTGGTTCTGAAATACAATCCTCAGCCAAGGAT-CCCTCCTGTGTTACAGGTGGATCAGCTAAAACAAACCAACACTGAAGATACAAAGAATGGGGGGAGGTTCATTGAAACCAGGGTAACACCGTTGGATGAGTTAAACACAAAGATGACACTGACCTTGAGCAGGCATAGAAGCTCAGAGACATGCCCGTAAAATGAAATCCCTGAGGAACTTTGTAGCTACCCAGAGATACCTGG--------TTCAAATTAGAATATCTGACAGATCACTCTCGGTATGTGCTGCAGAGTTCTGTGAACGTGTCACACCTAACTTGGGTCCAGTGTCTTCAGACTGAGCACAGGTTGCCACT-GCATGGTCTGAGAAT-GGAATAGAGTTCTGCCCACTT
i colAng1.NW_012114988v1          C 0 I 1
e cebCap1.NW_016108146v1             262973   3 +    407294 I
e saiBol1.JH378257                  2802119   0 -   4070394 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=-131.000000
s hg38.chr1_KI270711v1_random          6017 1 +     42210 A
s panTro5.chr1                    207999077 1 - 228573443 T
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133080 1 - 229774977 T
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3796948 1 -   8455952 T
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258836 1 +    297174 A
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103743480 1 - 225584828 A
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211823597 1 + 227556264 A
i macFas5.chr1                    I 8767 C 0
s macNem1.NW_012017688v1           11387856 1 -  14060431 A
i macNem1.NW_012017688v1          C 0 I 13034
s cerAty1.NW_012001440v1            1808220 1 -   2461138 A
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009158 1 -   1280666 A
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             491673 1 -   1325925 A
i manLeu1.NW_012105087v1          C 0 C 0
e colAng1.NW_012114988v1            3731108 1 -   3775709 I
e cebCap1.NW_016108146v1             262973 3 +    407294 I
e saiBol1.JH378257                  2802119 0 -   4070394 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=1480.000000
s hg38.chr1_KI270711v1_random          6018 1 +     42210 C
s panTro5.chr1                    207999078 1 - 228573443 C
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133081 1 - 229774977 C
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3796949 1 -   8455952 C
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258837 1 +    297174 C
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103743481 1 - 225584828 T
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211823598 1 + 227556264 T
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1808221 1 -   2461138 T
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009159 1 -   1280666 T
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             491674 1 -   1325925 T
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731109 1 -   3775709 C
i colAng1.NW_012114988v1          I 1 C 0
e cebCap1.NW_016108146v1             262973 3 +    407294 I
e saiBol1.JH378257                  2802119 0 -   4070394 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e macNem1.NW_012017688v1           11387857 13034 -  14060431 I

a score=584931.000000
s hg38.chr1_KI270711v1_random          6019 106 +     42210 CCATCCTATGTCTGGGCTTCCAAATGGAACTATAGTTTCATTCAAATCTTCACGTGCCTATAGGTCCTGCCTGCAGGAATGACATCTCTCGGCTTAGTAAGGGCTG
s panTro5.chr1                    207999079 106 - 228573443 CCATCCTATGACTGGGCTTCCAAATGGAACTATAGTTTCATTCAAACCTACATGTGCCTATAGGTCCTGCCTGCAGCAATGACATCTCTCAGCTTAGTAAGGGCTG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133082 106 - 229774977 CCATCCTATGACTGGGCTTCCAAAGGGAACTACAGTTTCATTCAAACCTACATGTGCGTATAGGTCCTGCCTGCAGCAATGACATCTCTCAGCTTAGTAAGGGCTG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3796950 105 -   8455952 CCATCCTATCACTGGGCTTCCAAAGGGAACTACAGTTTCATTCAAAT-TACATGTGCCTATAGGTCCTGCCTGCAGCAATGACATCTCTCAGCTTAGTAAGGGCTG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258838 105 +    297174 CCATCCT-TGCCTGGGCTTCAAAATGGAACTATAGTTTTATTCAAACCTACATGTGCCTATAGGTCCTGCCTGCAGCAATGACATCTCTCAGTTTAATAAGGGCCG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103743482 106 - 225584828 CCATCCTATGTCTGGGCTTCCAAATGGAACTACAGTTTCATTCAAGCCTACATGTGCCTATATGTCCTGCCTGCAGCACTGACATCTCTCAGCTTAGTAAGGGCTG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211823599 106 + 227556264 CCATCCTATGTCTGGGCTTCCAAATGGAACTACAGTTTCATTCAAGCCTACACGTGCCTATAGGTCCTGCCTGCAGCAATGACATCTCTCAGCTTAGTAAGGGCTG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11400891 106 -  14060431 CCATCCTACGTCTGGGCTTCCAAATGGAACTACAGTTTCATTCAAGCCTACACGTGCCTATAGGTCCTGCCTGCAGCAATGACATCTCTCAGCTTAGTAAGGGCTG
i macNem1.NW_012017688v1          I 13034 C 0
s cerAty1.NW_012001440v1            1808222 106 -   2461138 CCATCCTATGTCTGGGCTTCCAAATGGAACTACAGTTTCATTCAAGCCTACATGTGCCTATAGGTCCTGCCTGCAGCACTGACATCTCTCAGCTTAGTAAGGGCTG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009160 106 -   1280666 CCAGCCTATGTCTGGGCTTCCAAATGGAACTACAGTTTCATTCAAGCCTACATGTGCCTATAGGTCCTGCCTGCAGCAATGACATCTCTCAGCTTAGGAAGGGCTG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             491675 106 -   1325925 CCATCCTATGTCTGGGCTTCCAAATGGAACTAGAGTTTCATTCAAGCCTACACGTGCCTATAGGTCCTGCCTGCAGCACTGACATCTCTCAGCTTAGTAAGGGCTG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731110 106 -   3775709 CTATCCTATCTCTGGGATTCCAAATGGAACTACAGTTTCATTCAAACCTACATGTGCCTGTAAGTCCTGCCTGCGGCAATGACATCTCTCAGCTTAGTAAGGGCTG
i colAng1.NW_012114988v1          C 0 C 0
e cebCap1.NW_016108146v1             262973   3 +    407294 I
e saiBol1.JH378257                  2802119   0 -   4070394 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=34194.000000
s hg38.chr1_KI270711v1_random          6125 5 +     42210 CTTAC
s panTro5.chr1                    207999185 5 - 228573443 CTTAG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133188 5 - 229774977 CTTAG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797055 5 -   8455952 CTTAG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258943 5 +    297174 CTTAG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103743588 5 - 225584828 CTTAG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211823705 5 + 227556264 CTTAG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11400997 5 -  14060431 CTTAG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808328 5 -   2461138 CTTAG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009266 5 -   1280666 CTTAG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             491781 5 -   1325925 CTTAG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731216 5 -   3775709 CTTAG
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802119 5 -   4070394 CTTAG
i saiBol1.JH378257                C 0 C 0
e cebCap1.NW_016108146v1             262973 3 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=43862.000000
s hg38.chr1_KI270711v1_random          6130 5 +     42210 TGTGG
s panTro5.chr1                    207999190 5 - 228573443 TGTGG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133193 5 - 229774977 TGTGG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797060 5 -   8455952 TGTGG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258948 5 +    297174 TGTGG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103743593 5 - 225584828 TGTGG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211823710 5 + 227556264 TGTGG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401002 5 -  14060431 TGTGG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808333 5 -   2461138 TGTGG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009271 5 -   1280666 TGTGG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             491786 5 -   1325925 TGTGG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731221 5 -   3775709 TGTGG
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802124 5 -   4070394 TGTGG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             262976 5 +    407294 TGTGG
i cebCap1.NW_016108146v1          I 3 C 0
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=44016.000000
s hg38.chr1_KI270711v1_random          6135 5 +     42210 GAATA
s panTro5.chr1                    207999195 5 - 228573443 GAATA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133198 5 - 229774977 GAATA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797065 5 -   8455952 GAATA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258953 5 +    297174 GAATA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103743598 5 - 225584828 GAATA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211823715 5 + 227556264 GAATA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401007 5 -  14060431 GAATA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808338 5 -   2461138 GAATA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009276 5 -   1280666 GAATA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             491791 5 -   1325925 GAATA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731226 5 -   3775709 GAATA
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802129 5 -   4070394 GAATG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             262981 5 +    407294 GAATA
i cebCap1.NW_016108146v1          C 0 C 0
s tarSyr2.KE942660v1                 469073 5 -    507792 GAAAA
i tarSyr2.KE942660v1              N 0 I 42
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=241197.000000
s hg38.chr1_KI270711v1_random          6140 36 +     42210 TGACTCCCATCTGGAAGACCAGGTGGAGACTTGTTC
s panTro5.chr1                    207999200 36 - 228573443 TGACTCCCATATGGAAGGCCAGGTGGTGCCTTATCA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133203 36 - 229774977 TGACTCCCATATGGAAGGCCAGGTGGTGCCTTATCA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797070 35 -   8455952 TGACT-CCATCTGGAAGGCCAGGTGGTGCCTTATCA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258958 36 +    297174 TGACTCCCATCTAGAAGACCAGGTGGAGCTTTATCC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103743603 36 - 225584828 TGACTACCATCTGGAAGACCAGGTGGAGCCTTATCA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211823720 36 + 227556264 TGACTCCCATCTGGAAGACCGGGTGGAGCCTTATCA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401012 36 -  14060431 TGACTCCCATCTGGAAGGCCGGGTGGAGCCTTATCA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808343 36 -   2461138 TGACTACCATCTGGAAGACCAGGTGGAGCCTTATCA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009281 36 -   1280666 TGACTCCCATCTGGAAGATCAGGTGGAGCCTTATCA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             491796 36 -   1325925 TGACTCCCATCTGGAAGACCAGGTGGAGCCTTATCA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731231 36 -   3775709 TGACTCCCATCTGGAAGCCCAGCTGGAACCTTATCA
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802134 36 -   4070394 TGACCCCTATCCGGGAGACCAGGCGGAGCCTTATCA
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             262986 36 +    407294 TGACCCCTATCAGGGAGACCAGGTGGAGTCCTATCA
i cebCap1.NW_016108146v1          C 0 C 0
e tarSyr2.KE942660v1                 469078 42 -    507792 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=10150.000000
s hg38.chr1_KI270711v1_random          6176 3 +     42210 -CCA
s panTro5.chr1                    207999236 3 - 228573443 -CTG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133239 3 - 229774977 -CTG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797105 3 -   8455952 -CTG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258994 3 +    297174 -CCA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103743639 3 - 225584828 -CTG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211823756 3 + 227556264 -CCA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401048 3 -  14060431 -CCA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808379 3 -   2461138 -CTG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009317 3 -   1280666 -CCG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             491832 3 -   1325925 -CTG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731267 3 -   3775709 -CCG
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802170 3 -   4070394 -CCG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             263022 3 +    407294 -CCA
i cebCap1.NW_016108146v1          C 0 C 0
s tarSyr2.KE942660v1                 469120 3 -    507792 CCT-
i tarSyr2.KE942660v1              I 42 I 197
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=121645.000000
s hg38.chr1_KI270711v1_random          6179 17 +     42210 TCAAAGT-AAGAAACCTA
s panTro5.chr1                    207999239 17 - 228573443 TCAAAGT-AAAAAACCTA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133242 17 - 229774977 TCAAAGT-AAAAAACCTA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797108 17 -   8455952 TCAAAGT-AAAAAACCTA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258997 17 +    297174 TCAAAGT-AAAAAACGTA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103743642 18 - 225584828 TCAAAGTAAAAAAACCTA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211823759 17 + 227556264 TCAAAGT-AAAAAACCTA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401051 17 -  14060431 TCAAAGT-AAAAAACCTA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808382 17 -   2461138 TCAAAGT-AAAAAACCTA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009320 17 -   1280666 TCAAAGT-AAAAAACCTA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             491835 17 -   1325925 TCAAAGT-AAAAAACCTA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731270 17 -   3775709 TCAAAGT-AGAAGACCCA
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802173 17 -   4070394 TCATAGT-AAGAAACCTA
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             263025 17 +    407294 TCATAGT-AAGAAACCTA
i cebCap1.NW_016108146v1          C 0 T 77386
e tarSyr2.KE942660v1                 469123 197 -    507792 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=617112.000000
s hg38.chr1_KI270711v1_random          6196 115 +     42210 TTGTCCACGTCAAGGGCGAAGCTGATGTGCTGTTCCTCAAATGAGTAAAACACACTTCTGTAGTGCTGGAATGAGTCAGGTAGTTCAAAGTACATTGACGGAGTCGAATAACATC
s panTro5.chr1                    207999256 115 - 228573443 TTGTCCACGTCAAGGGCCAAGCTGATGTCCTGTTCCTCAAATGAGTAAAAGGCACTTCTGTACTGCTGGAATGAGTCAGGTAGTTGAAAGTAAGTTGAAGTAGTCGAATAACATC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133259 115 - 229774977 TTGTCCATGTCAAAGGCCAAGCTGATGTCCTGTTCCTCAAATGAGTAAAAGGCACTTCTGTACTGCTGGAATGAGTCAGGTAGTTGAAAGTAAGTTGAAGTAGTCGAATAACATC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797125 113 -   8455952 TTCTCCACGTCAAGGGCCAAGCTGACGTCCTGTTCCTCAAATGAGTAAAAGGCACTTCTGTACTGCTGGAATGAGGCA-GTAGTTGAAAGTAAGTTGAAGTAGT-GAATAACATC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259014 114 +    297174 TTGTCCAC-TCAAGGGCCAAGCTGCTGTGCTGTTCCTTAAGTGAGTAAAAGGCACTTCTGTAGTGCTGGAATGAGTCAGGTAGTTCAAACTAAGTTGGAGGAGGTGAATAACATC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103743660 115 - 225584828 TTGTCCATGTCAAGGGACAAGCTAATGTGCTGTTCCTCAAATGAGTAAAAGGCACTTCTGTAGTGCTGAAATGAGTCAGGTAATTCAAAGTAAGTTGAAGAAGTCGTATAACATC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211823776 115 + 227556264 TTGTCCATGTCAAAGGTCAAGCCAATGTACTGTTCCTCAAATGAGTAAAAGGCACTTCTGTAGTGCTGGAATGAGTCAGGTAATTCAAAGTAAGTTGAAGAAGTCGAATAATATC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401068 115 -  14060431 TTGTCCATGTCAAAGGTCAAGCCAATGTACTGTTCCTCAAATGAGTAAAAGGCACTTCTGTAGTGCTGGAATGAGTCAGGTAATTCAAAGTAAGTTGAAGAAGTCGAATAATATC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808399 115 -   2461138 TTGTCCATGTCAAGGGACAAGCTAATGTGCTGTTCCTCAAATGAGTAAATGGCACTTCTGTAGTGCTGAAATGAGTCAGGTAATTCAAAGTAAGTTGAAGAAGTCGAATAACATC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009337 115 -   1280666 TTGTCCATGTCAAAGGTCAAGCTAATGTGCTGTTCCTCAAATGAGTAAAAGGCACTTCTATAGTGCTGGAATGAGTCAGGTAATTCAAAGTAAGTTGAAGAAGTCAAATAACATC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             491852 115 -   1325925 CTGTCCATGTCAAGGGACAAGCTAATGTGCTGTTCCTCAAATGAGTAAAAGGCACTTCTGTAGTGCTGAAATGAGTCAGGTAATTCAAAGTAAGTTGAAGAAGTCGAATAACATC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731287 115 -   3775709 TTGTCCACGTCAAGGGCCAAGCTGACGTGCTGTTCCTCAAGTGAGTAGAAGGCACTTGTGTAGTGCTGGAATGAGTCAGGTAGTTGAAAGTAACTTGAAGGAGTCGAATAACATC
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802190 114 -   4070394 CTGTCCATGTCCAAAGTCAAGCGAACATGCGCTTCTACAAATAAA-AAAAAGCATATGTGTAAGCCTGGCAGGTGTAAAAAAACTCAGGATAGGCTGTGTACATGGAATGCAATA
i saiBol1.JH378257                C 0 C 0
e tarSyr2.KE942660v1                 469123 197 -    507792 I
e cebCap1.NW_016108146v1             263042 77386 +    407294 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=403551.000000
s hg38.chr1_KI270711v1_random          6311 61 +     42210 TATCCAGTGAGTCCTGCAAGACTTCAGGCTCTTCCACTTCCATCAGCATGCCGCTGAGCCT
s panTro5.chr1                    207999371 61 - 228573443 TATCCAGTGAGTCCTGCAAGACTTCAGGCTCTTCTGCTTCCATCAGCACCTCGTTGAGCCT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133374 61 - 229774977 TATCCAGTGAGTCCTGCAAGACTTCAGGCTCTTCTGCTTCCATCAGCACCTCGTTGAGCCT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797238 61 -   8455952 TATCCAGTGAGTCCTGCAAGACTTCAGGCTCTTCTGCTTCCATCAGCACCTCGTTGAGCCT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259128 61 +    297174 TATCCAGTGAGTCCTGCAAGACTTCAGCCTCTTCCACTTCCATCGGCACCCCGTTGAGCCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103743775 61 - 225584828 TATCCAATGAGTCCTGCAAGACTCCAGGCTCTTCCACTTCCACCAGCACGCTGTTGAGCCT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211823891 60 + 227556264 TAT-CAGTGACTCCTGCGAGACTTCAGGCTCTTCCACTTCCATCAGCACGCCACTGAGCCT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401183 60 -  14060431 TAT-CAGTGACTCCTGCGAGACTTCAGGCTCTTCCACTTCCATCAGCACGCTGTTGAGCCT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808514 61 -   2461138 TATCCAATGAGTCCTGCAAGACTCCAGGCTCTTCCACATCCACCAGCACGCTGTTGAGCCT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009452 61 -   1280666 TATCCAATGAGTCCTACAAGACTTCAGGCTCTTCCGCTTCCATCAGCATGCCATTCAGCCT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             491967 61 -   1325925 TATCCAATGAGTCCTGCAAGACTTTAGGCTCTTCCACTTCCACCAGCACGCTGTTGAGCCC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731402 61 -   3775709 CACTCAGTGAGTCCTGCAAGACTTCAGGCTCTCCTGCTTCCATCAGCACCCCGTTGAGCCT
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802304 61 -   4070394 TATCCAGTGAGTACCAGAAGACTTCGGGTTCTTCTGCTTCCACCAGCTCCACGCTGAGCCT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             185656 61 +    407294 TATCCAGTGAGTACCGGAAGACTTCAGGCTCTTCTGCTTCCACCAGCTCCATGCTGAGCCT
i cebCap1.NW_016108146v1          T 77386 C 0
e tarSyr2.KE942660v1                 469123 197 -    507792 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=214609.000000
s hg38.chr1_KI270711v1_random          6372 29 +     42210 GGAAAAGCAGACAAAACTAAAGAAGCAGC
s panTro5.chr1                    207999432 29 - 228573443 GGAAAAGGAGACAAAACTAAAGAAGCAGC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133435 29 - 229774977 GGAAAAGGAGACAAAACTAAAGAAGCAGC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797299 29 -   8455952 GGAAAAGGAGACAAAACTAAAGAAGCAGC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259189 29 +    297174 GGAAAAGCAGACAAAACTAAAGAAGCAGC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103743836 29 - 225584828 GGAAAAGGAGACAAAACTAAAGAAGCAGC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211823951 29 + 227556264 GGAAAAGGAGACAAAACTAAAGAAGCAGC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401243 29 -  14060431 GGAAAAGGAGACAAAACTAAAGAAGCAGC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808575 29 -   2461138 GGAAAAGGAGACAAAACTAGAGAAGCAGC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009513 29 -   1280666 GGAAAAGGAGACAAAACTAAAGAAACAGC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492028 29 -   1325925 GGAAAAGGAGACAAAACTAAAGAAGCAGC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731463 29 -   3775709 GGAAAAGGAGACAAAACTAAAGAAGCAGC
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802365 29 -   4070394 AGAAAAGGAGGAAAAACCAAAGAATAAGT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             185717 29 +    407294 AGAAAAGGAGGAAAAACCAAAGAATAAGT
i cebCap1.NW_016108146v1          C 0 I 77654
s tarSyr2.KE942660v1                 469320 24 -    507792 GGTAGAGAAGGTGAAGATAAACAC-----
i tarSyr2.KE942660v1              I 197 C 0
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=162038.000000
s hg38.chr1_KI270711v1_random          6401 22 +     42210 CAGGGAAAATCAGACACCACAG
s panTro5.chr1                    207999461 22 - 228573443 CAGGGAAAATCAGACACCACAG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133464 22 - 229774977 CAGGGAAAATCAGACACCACAG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797328 22 -   8455952 CAGGGAAAATCAGACACCACAG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259218 22 +    297174 CAGGGAAAATCAGACACCACAG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103743865 22 - 225584828 CAGGGAAAATCAGACACCACAG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211823980 22 + 227556264 CAGGGAAAATCAGACACCACAG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401272 22 -  14060431 CAGGGAAAATCAGACACCACAG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808604 22 -   2461138 CAGGAAAAATCAGACACCACAG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009542 22 -   1280666 CAGAGAAAATCAGACACCACAG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492057 22 -   1325925 CAGGGAAAATCAGACACCACAG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731492 22 -   3775709 CAGGGGAAATCAGACACCACAG
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802394 22 -   4070394 CAGGGAAAGTAAGACACCGCAG
i saiBol1.JH378257                C 0 C 0
s tarSyr2.KE942660v1                 469344 20 -    507792 CAAGGGGACT--GAAACCACAG
i tarSyr2.KE942660v1              C 0 I 3955
e cebCap1.NW_016108146v1             185746 77654 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=283153.000000
s hg38.chr1_KI270711v1_random          6423 60 +     42210 AGCCCCA-CTAGATTTCAGAAGTAACGTAAGGAAGTGGT-AAGAAAAGAAAAG---------GATAGATCC
s panTro5.chr1                    207999483 62 - 228573443 AGCCCCAACTAGATTTCATGGGTAGCATTAGGAAGTGGTCGAAAAAGGAAAAG---------GATAGGTCC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133486 62 - 229774977 AGCCCCAACTAGATTTCATGGGTAGCATTAGGAAGTGGTCGAAAAAGGAAAAG---------GATAGGTCC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797350 61 -   8455952 AGCCCCAACTAGATTTCA-GGGTAACATAAGGAAGTGGTCAAAAAAGGAAAAG---------GATAGATCC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259240 62 +    297174 AGCCCCAGCTAGATTTCAGGGGTAACACAAGGAAGTGATTAAAAAAGAAAAAG---------GATAGATCC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103743887 53 - 225584828 AGCCCCAACTAGATTTCAGGGGTAACATGAGGAAGTGGTTAAAAAAGAAAAAG------------------
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824002 53 + 227556264 AGCCCCAACTAGATTTCAGGGGTAACATAAGGAAGTGGTTAAAAAAGAAAAAG------------------
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401294 53 -  14060431 AGCCCCAACTAGATTTCAGGGGTAACATAAGGAAGTGGTTAAAAAAGAAAAAG------------------
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808626 53 -   2461138 AGCCCCAACTAGATTTCAGGGGTAACATGAGGAAGTGGTTAAAAAAGAAAAAG------------------
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009564 53 -   1280666 AGCCCCAACTAGATTTCAGGGGTAACATGAGGAAGTGGTTAAAAAAGAAAAAG------------------
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492079 53 -   1325925 AGCCCCAACTAGATTTCAGGGGTAACATGAGGAAGTGGTTAAAAAAGAAAAAG------------------
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731514 62 -   3775709 AGCCCCAACTAGATTTCAGGGGTAACATCGGGAAGTGGTTAAAAAAGGAAAAGGATAGATCC---------
i colAng1.NW_012114988v1          C 0 I 2
s saiBol1.JH378257                  2802416 51 -   4070394 AGCCCCAATTAGATTTCATGGGGAGCACAAGAAAGTGGTTAATAAAGAGAA--------------------
i saiBol1.JH378257                C 0 C 0
e tarSyr2.KE942660v1                 469364 3955 -    507792 I
e cebCap1.NW_016108146v1             185746 77654 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=1749.000000
s hg38.chr1_KI270711v1_random          6483 1 +     42210 A
s panTro5.chr1                    207999545 1 - 228573443 A
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133548 1 - 229774977 A
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797411 1 -   8455952 A
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259302 1 +    297174 A
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103743940 1 - 225584828 G
i rheMac8.chr1                    C 0 I 9
s macFas5.chr1                    211824055 1 + 227556264 G
i macFas5.chr1                    C 0 I 9
s macNem1.NW_012017688v1           11401347 1 -  14060431 G
i macNem1.NW_012017688v1          C 0 I 9
s cerAty1.NW_012001440v1            1808679 1 -   2461138 G
i cerAty1.NW_012001440v1          C 0 I 9
s chlSab2.chr20_KE148050v1_random   1009617 1 -   1280666 G
i chlSab2.chr20_KE148050v1_random C 0 I 9
s manLeu1.NW_012105087v1             492132 1 -   1325925 G
i manLeu1.NW_012105087v1          C 0 I 9
s saiBol1.JH378257                  2802467 1 -   4070394 A
i saiBol1.JH378257                C 0 C 0
e tarSyr2.KE942660v1                 469364 3955 -    507792 I
e colAng1.NW_012114988v1            3731576 2 -   3775709 I
e cebCap1.NW_016108146v1             185746 77654 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=425659.000000
s hg38.chr1_KI270711v1_random          6484 104 +     42210 ---------TTAGATCCATTAATGAGGTAAAAAAAAAAAAT-------TATTGCCTTTATGTTGGGATAGAAAAGGGCCAGGTAGAAAACAATgaaagagaaagac----------------a--gagagacagag----------------------ac--
s panTro5.chr1                    207999546  90 - 228573443 ---------TTA---------ATGAGGTAAAAAAA-----T-------TATTGCCTTTATGTTGGGATAGAACAGGGCCAAGTAGAAAACAATgaaagagaaagac----------------a--gagagtgagag----------------------ag--
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133549  90 - 229774977 ---------TTA---------ATGAGGTAAAAAAA-----C-------TATTGCCTTTATGTTGGGATAGAACAGGGCCAAGTAGAAAACAATgaaagagaaagac----------------a--gagagtgagag----------------------ag--
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797412  90 -   8455952 ---------TTA---------ATGAGGTAAAAAAA-----T-------TATTGCCTTTATGTTGGGATAGAACAGGGCCAAGTAGAAAACAATgaaagagaaagac----------------a--gagagagagag----------------------ag--
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259303  91 +    297174 ---------TTA---------ATGAGGTAAAAAA------T-------TATTGCCTTTATGTTGGGATAGAACAGGGCCAGGTAGAAAACAATGGAagagaaagac----------------agggagagagagag----------------------ag--
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103743950 100 - 225584828 ---------TTA---------ATGAGGTAAAACAA-----T-------TATTGACTTTATGTTGGGATAGAACAGGGCCAGGTAGAAAACATTgaaagagaaagac----------------a--gagagagagaggc------------agagacagac--
i rheMac8.chr1                    I 9 C 0
s macFas5.chr1                    211824065 122 + 227556264 ---------TTA---------ATGAGGT-AAAAAA-----TATATATATATTGCCTTTATGTTGGgatagaacagggccaggtagaaaacaatgaaagagaaagacagagagagagagagaga--gagagagagaggc------------agagacagag--
i macFas5.chr1                    I 9 C 0
s macNem1.NW_012017688v1           11401357 121 -  14060431 ---------TTA---------ATGAGGTAAAAAAA-----TATATATATATTGCCTTTATGTTGGGATAGAACAGGGCCAGGTAGAAAACAATGAAagagaaagac--agagagagagagaga--gagagagagaggc------------agagacagag--
i macNem1.NW_012017688v1          I 9 C 0
s cerAty1.NW_012001440v1            1808689 106 -   2461138 ---------TTA---------ATGAGGTAAAACAA-----T-------TATTGACTTTATGTTGGGATAGGACAGGGCCAGGTAGAAAACATTGAAagagaaagac----------agagaga--gagagagagaggc------------agagacagag--
i cerAty1.NW_012001440v1          I 9 C 0
s chlSab2.chr20_KE148050v1_random   1009627  94 -   1280666 ---------TTA---------ATGAGGTAAAACAA-----T-------TATTGACTTTATGTTGGGATAGAACAGGGCCAGGTAGAAAACATTgaaagagaaagac------------agaga--gacagaaagaagc------------------------
i chlSab2.chr20_KE148050v1_random I 9 C 0
s manLeu1.NW_012105087v1             492142 104 -   1325925 ---------TTA---------ATGAGGTAAAACAA-----T-------TATTGACTTTATGTTGGGATAGAACAGGGCCAGGTAGAAAACATTGAAagagaaagac------------agaga--gagagagagaggc------------agagacagag--
i manLeu1.NW_012105087v1          I 9 C 0
s colAng1.NW_012114988v1            3731578  87 -   3775709 ---------TTA---------ATGAGGT-AAACCA-----T-------TGTTGCCTTTATGTTGGGATAGAACAGGGCCAGGTAGAAAACAATGAAGgagaaagac----------------a--gagagagagag--------------------------
i colAng1.NW_012114988v1          I 2 C 0
s saiBol1.JH378257                  2802468 133 -   4070394 ACGGATCCATGA---------ATGACAT-AAAAAA-----T-------TACTGCC-TTATGTTGGGATGGGCAAGAGTAGGGCAAAAAAGAATAAAagagggagag----agagacagagaca--gagagagagagacagagagagacagagagacagagag
i saiBol1.JH378257                C 0 C 0
e tarSyr2.KE942660v1                 469364 3955 -    507792 I
e cebCap1.NW_016108146v1             185746 77654 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=42602.000000
s hg38.chr1_KI270711v1_random          6588 15 +     42210 agagacagagac----------aga
s panTro5.chr1                    207999636 11 - 228573443 agagacagaga--------------
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133639 11 - 229774977 agagacagaca--------------
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797502 17 -   8455952 agagacagagac--------agaga
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259394 21 +    297174 agagacagagacag----agagaga
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744050 19 - 225584828 agagacagaaag------agagaga
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824187 23 + 227556264 aaagacagagagagaa--agagaga
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401478 23 -  14060431 agagacagagagagaa--agagaga
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808795 25 -   2461138 agagacagagagagaaagagagaga
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009721 25 -   1280666 agagacagagagagaaagagagaga
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492246 25 -   1325925 agagacagagagagaaagagagaga
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731665  7 -   3775709 ------------------agtgaga
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802601 15 -   4070394 ------agagagag----agagaga
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             263400 15 +    407294 ------agagagag----agagaga
i cebCap1.NW_016108146v1          I 77654 C 0
e tarSyr2.KE942660v1                 469364 3955 -    507792 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=40110.000000
s hg38.chr1_KI270711v1_random          6603 4 +     42210 gaGA
s panTro5.chr1                    207999647 4 - 228573443 gaga
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133650 4 - 229774977 gaga
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797519 4 -   8455952 gaga
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259415 4 +    297174 gaga
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744069 4 - 225584828 gaga
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824210 4 + 227556264 gaga
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401501 4 -  14060431 gaga
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808820 4 -   2461138 gaga
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009746 4 -   1280666 gaga
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492271 4 -   1325925 gaga
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731672 4 -   3775709 gaga
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802616 4 -   4070394 gaga
i saiBol1.JH378257                C 0 I 52
s cebCap1.NW_016108146v1             263415 4 +    407294 gaga
i cebCap1.NW_016108146v1          C 0 C 0
s tarSyr2.ABRT02001635v1                377 4 +      4393 GAGA
i tarSyr2.ABRT02001635v1          n 3955 C 0
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=24685.000000
s hg38.chr1_KI270711v1_random          6607 5 +     42210 AAGTG
s panTro5.chr1                    207999651 5 - 228573443 aagtg
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133654 5 - 229774977 aagtg
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797523 5 -   8455952 aagtg
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259419 5 +    297174 aagcg
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744073 5 - 225584828 aagtg
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824214 5 + 227556264 aagtg
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401505 5 -  14060431 AAGTG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808824 5 -   2461138 AAGTG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009750 5 -   1280666 aagcg
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492275 5 -   1325925 AAGTG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731676 5 -   3775709 gCGCG
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802672 5 -   4070394 aagTA
i saiBol1.JH378257                I 52 C 0
s cebCap1.NW_016108146v1             263419 5 +    407294 aagCA
i cebCap1.NW_016108146v1          C 0 T 77506
s tarSyr2.ABRT02001635v1                381 1 +      4393 A----
i tarSyr2.ABRT02001635v1          C 0 C 0
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=473759.000000
s hg38.chr1_KI270711v1_random          6612 65 +     42210 AGCT-AGTGAATTGGCCAGGT----GACATACTGGTAAGGGAGTAAAAGGACACTCTGAGTTAGTGCCCT
s panTro5.chr1                    207999656 66 - 228573443 agCTCAGTGAATTGGCCAGGT----GACACATTGATGAGGGAGTAAAAGGACACTGTGAGTTAGTGCTCT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133659 66 - 229774977 agCTCAGTGAATTGGCCAGGT----GACACATTGATGAGGGAGTAAAAGGACACTGTGAGTTAGTGCTCT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797528 66 -   8455952 agCTCAGTGAATTGGCCAGGT----GACACATTGATGAGGGAGTAAAAGGACACTCTGAGTTAGTGCCCT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259424 66 +    297174 agCTCAGTGAATTAGCCAGGT----GACACACTGATAAGGGAGTAAAAGGACATTCTGAGTTAGTGTCCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744078 66 - 225584828 agCTCAGTGAATTGGCCAGGT----GACACACTGATAAGGGAGAAAAAGGACACTCTGAGTTGGTGCCCT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824219 67 + 227556264 aGCTCAGTGAATTGGCCAGGTGACAGACACACTGATAAGGGAG---AAGGACACTCTGAGTTGGTGCCCT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401510 67 -  14060431 AGCTCAGTGAATTGGCCAGGTGACAGACACACTGATAAGGGAG---AAGGACACTCTGAGTTGGTGCCCT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808829 66 -   2461138 AGCTCAGTGAATTGGCCAGGT----GACACACTGATAAGGGAGAAAAAGGACACTCTGAGTTGGTGCCCT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009755 66 -   1280666 agCTCAGTGAATTGGCCAGGT----GACACACTGATAAGGGAGAAAAAGGACATTCTGAGTTGGTGCCCT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492280 66 -   1325925 AGCTCAGTGAATTGGCCAGGT----GACACACTGATAAGGGAGAAAAAGGACACTCTGAGTTGGTGCCCT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731681 66 -   3775709 AACTCAGTGAATTGGACAGGT----GACACACTGATAAGGGAGTAAAAGGACACTCTGAGTTAGAGCCCT
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802677 66 -   4070394 AGCTCAGTGAACCGTCCAGGT----GACACACTCATGAGGGAGTAAAAGGACACTCCGAGTTAGTACCCT
i saiBol1.JH378257                C 0 I 48
s cebCap1.NW_016108146v1             185918 66 +    407294 AGCTCAGTGAACCGTCCAGGT----GACACACTGATGAGGGAGTAAAAGGACACTCTGAGTTAGTGCCCT
i cebCap1.NW_016108146v1          T 77506 C 0
s tarSyr2.ABRT02001635v1                382 49 +      4393 -------TGCACTGGGCAGAT----GAGGAACTGA----GGAAGAAAGAGACAAACCTAT------CCCT
i tarSyr2.ABRT02001635v1          C 0 C 0
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=75366.000000
s hg38.chr1_KI270711v1_random          6677 12 +     42210 CATGACACACAG------
s panTro5.chr1                    207999722 12 - 228573443 CAGGACACACAG------
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133725 12 - 229774977 CAGGACACACAG------
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797594 12 -   8455952 CAGGACACACAG------
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259490 12 +    297174 CATGACACACAG------
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744144 12 - 225584828 CATGACACACAG------
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824286 12 + 227556264 CATGACACACAG------
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401577 12 -  14060431 CATGACACACAG------
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808895 12 -   2461138 CATGACACACAG------
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009821 12 -   1280666 CATGACACACAG------
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492346 12 -   1325925 CATGACACACAG------
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731747 12 -   3775709 TATGACACACAG------
i colAng1.NW_012114988v1          C 0 C 0
s cebCap1.NW_016108146v1             185984 12 +    407294 CAGGACACACAG------
i cebCap1.NW_016108146v1          C 0 I 21
s tarSyr2.ABRT02001635v1                431 16 +      4393 --GAAGAAACAGTTACAG
i tarSyr2.ABRT02001635v1          C 0 C 0
e saiBol1.JH378257                  2802743 48 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=435950.000000
s hg38.chr1_KI270711v1_random          6689 89 +     42210 CACACTGCGATCATG-------AAAAGAGTGAGCTCAATAGTTTTCCATAAAATATGCTCAAAATTCGATGCAGTGGCCATGAGAGTACAGCTTTT-
s panTro5.chr1                    207999734 89 - 228573443 CAAACAGTGATCATG-------AGAAGAGTGAGCTCAATAGTTTTCCATCAAGTGTGCTTAAAATTCCATGCAGTTGCCATAAGGGTACAACTTCT-
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133737 89 - 229774977 CAAACAGTGATCATG-------AGAAGAGTGAGCTCAATAGTTTTCCATCAAGTGTGCTTAAAATTCCATGCAGTTGCCATAAGGGTACAACTTCT-
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797606 87 -   8455952 CAAACAGTGATCATG-------AGAAGAGTGAGCTCAATAGTTTTCCATCAAGTGTGCT-AAAATTCCATGCAGTCGCCATAAGGGTACA-CTTTT-
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259502 75 +    297174 CAA---------------------AAGAGTGAGCTCTTTAACTTTCCAGAAAACGTGCTCAAAATTCTATGCAGTCGCCATGAAAGTACAGCTTTT-
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744156 89 - 225584828 CAAACAGTGATCATG-------AAAAGAGTGAGCTCAATAGTTTTCCATAAAATGTGCTCAAAATTCGATGCAGTCACCATGAGAGTACAGCTTTT-
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824298 89 + 227556264 CAAACAGTGATCATG-------AAAAGAATGAGCTCAATAGTTTTCCATAAAATGTGCTCAAAATTCGATGCAGTCACCATGAGAGTACAGCTTTT-
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401589 89 -  14060431 CAAACAGTGATCATG-------AAAAGAGTGAGCTCAATAGTTTTCCATAAAATGTGCTCAAAATTCGATGCAGTCACCATGAGAGTACAGCTTTT-
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808907 89 -   2461138 CAAACAGTGATCATG-------AAAAGAATGAGCTCAATAGGTTTCCATAAAATGTGCTCAAAATTCGATGCAGTCACCATGAGAGTACAGCTTTT-
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009833 89 -   1280666 CAAACAGTGATCATG-------AAAAGAATGAGCTCAATAGTTTTCCATAAAATGTGCTCAAAATTTGATGCAGTCACCATGAGAGTACAGCTTTT-
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492358 87 -   1325925 CAAACAGTGATCATG-------AAAAGAATGAGCTCAATAGTTTTCCATAAAATGTGCTCAAAA--CGATGCAGTCACCATGAGAGTACAGCTTTT-
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731759 87 -   3775709 CAAACAGTGATTATG---------AAGAGTGAGCTCAATAGTTTTCCATAAAATGTGATTAAAATTCGATGCAGACGCCATGAGAGTACAGCTTTT-
i colAng1.NW_012114988v1          C 0 I 115
s tarSyr2.ABRT02001635v1                447 97 +      4393 TACACAGCACACATGTTGGGACATAAAGGTATATTCAGCATGTTTCCACAAATTGTGCTGAAATCAACATGCAGTGGTCAAATAAACACAGGCTCCT
i tarSyr2.ABRT02001635v1          C 0 C 0
e cebCap1.NW_016108146v1             185996 21 +    407294 I
e saiBol1.JH378257                  2802743 48 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=12606.000000
s hg38.chr1_KI270711v1_random          6778 2 +     42210 GA
s panTro5.chr1                    207999823 2 - 228573443 GA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133826 2 - 229774977 GA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797693 2 -   8455952 GA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259577 2 +    297174 GA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744245 2 - 225584828 GA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824387 2 + 227556264 GA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401678 2 -  14060431 GA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808996 2 -   2461138 GA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009922 2 -   1280666 GA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492445 2 -   1325925 GA
i manLeu1.NW_012105087v1          C 0 C 0
s tarSyr2.ABRT02001635v1                544 2 +      4393 GA
i tarSyr2.ABRT02001635v1          C 0 n 0
e colAng1.NW_012114988v1            3731846 115 -   3775709 I
e cebCap1.NW_016108146v1             185996 21 +    407294 I
e saiBol1.JH378257                  2802743 48 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=3971.000000
s hg38.chr1_KI270711v1_random          6780 1 +     42210 A
s panTro5.chr1                    207999825 1 - 228573443 G
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133828 1 - 229774977 G
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797695 1 -   8455952 G
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259579 1 +    297174 G
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744247 1 - 225584828 G
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824389 1 + 227556264 G
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401680 1 -  14060431 G
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808998 1 -   2461138 G
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009924 1 -   1280666 G
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492447 1 -   1325925 G
i manLeu1.NW_012105087v1          C 0 C 0
s cebCap1.NW_016108146v1             186017 1 +    407294 A
i cebCap1.NW_016108146v1          I 21 C 0
e tarSyr2.ABRT02001635v1                546 0 +      4393 I
e colAng1.NW_012114988v1            3731846 115 -   3775709 I
e saiBol1.JH378257                  2802743 48 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=94455.000000
s hg38.chr1_KI270711v1_random          6781 14 +     42210 GTATGGTCATCCTA
s panTro5.chr1                    207999826 14 - 228573443 GTATGGTCAACCTA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133829 14 - 229774977 GTATGGTCAACCTA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797696 14 -   8455952 GTATGGTCAACCTA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259580 14 +    297174 GTATGGTCAACCTA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744248 14 - 225584828 GTATGGTCAACCTG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824390 14 + 227556264 GTATGGTCAACCTG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401681 14 -  14060431 GTATGGTCAACCTG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1808999 14 -   2461138 GTATGGTCAACCTG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009925 14 -   1280666 GTATGGTCAACCTG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492448 14 -   1325925 GTATGGTCAACCTG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731961 14 -   3775709 GTATGATCAACCTA
i colAng1.NW_012114988v1          I 115 C 0
s cebCap1.NW_016108146v1             186018 14 +    407294 GTATGGTCAACCTA
i cebCap1.NW_016108146v1          C 0 C 0
e tarSyr2.ABRT02001635v1                546  0 +      4393 I
e saiBol1.JH378257                  2802743 48 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=798854.000000
s hg38.chr1_KI270711v1_random          6795 109 +     42210 TGGTACGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAACATCTACTGCAATGAAAACCAACAGCAATGACAGTAGGAGTAATTCAGCCTTCGTTGAAAACA
s panTro5.chr1                    207999840 109 - 228573443 TGGTGCATTAGTAAATGATAAGGGGAGGAAGAAATGAAAACCTAAACGTCTACTGCAATGAAAACCAACAGCAATGTCAGCAGGAGTCATTCAGCCTTCATTGAAAACA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133843 109 - 229774977 TGGTACATTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAACGTTTACTGCAATGAAAACCAACAGCAATGTCAGCAGGAGTAATTCAGCCTTCATTGAAAACA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797710 109 -   8455952 TGGTACATTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAACATCTACTGCAATGAAAACCAACAGCAATGTCAGCAGGAGTAATTCAGCCTTCATTGAAAACA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259594 109 +    297174 TGGTACATTAGTAAATGATAAGGGGAGGAAGAAATGAAAACCTAAATGTCTACTACAATGAAAACCAACAGCAATGACATTAGGAGTAATTCGGCCTTCGTTGAAAACA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744262 109 - 225584828 TGATACGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAACGTCTACTGCAATGAAAACCAACAGCAATGTCAATAGGAGGAATTCAGCCTTCGTTGAAAACA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824404 109 + 227556264 TGGTACGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAACGTCTACTGCAATGAAAACCAACAGCAATGTCAGTAGGAGGAATTCAGCCTTCGTTGAAAACA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401695 109 -  14060431 TGGTACGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAACGTCTACTGCAATGAAAACCAACAGCAATGTCAGTAGGAGGAATTCAGCCTTCGTTGAAAACA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1809013 109 -   2461138 TGATACATTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAACGTCTACTGCAATGAAAACCAACAGCAATGTCAACAGGAGGAATTCAGCCTTCGTTGAAAACA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009939 109 -   1280666 TGGTATGTTAGTAAATGATAAGGGGAGGAAGAAACGGAAACCGAAACGTCTACTGCAATGAAAACCAACAGCAATGTCAGTAGGAGGAATTCAGCCTTCATTGAAAACA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492462 109 -   1325925 TGATACGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAACGTCTACTGCAATGAAAACCAACAGCAATGTCAATAGGAGGAATTCAGCCTTCGCTGAAAACA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3731975 109 -   3775709 TGGTACGTTAGTAAATGATAATGGGAGGAAGAAATGGAAACCTAAACCTCTACTGCAATGAAAACAAACAGCAATATCAGTAGGAGTAATTCAGCTTTCATTAAAAACA
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802791 108 -   4070394 CGGCAC-TTAGTAAATGATAAGGTGAGGAAGAAATAGAAACCTAAATATCTACCGCAACAAAAACCAACAGCAATGTTAGTAGGAATAGTTCAGGCTTCGCTGAAAACA
i saiBol1.JH378257                I 48 C 0
s cebCap1.NW_016108146v1             186032 108 +    407294 CAGTAG-TTAGTACATGAAAATGGGAGGAAGAAATGGAAACCTAAATATCTACTGCAATGAAAACCAACAGCAATGTTAGTAGGAATAGTTCAGGCTTCGTTGAAAACA
i cebCap1.NW_016108146v1          C 0 I 46
e tarSyr2.ABRT02001635v1                546   0 +      4393 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=85012.000000
s hg38.chr1_KI270711v1_random          6904 16 +     42210 ------TGAAATCA--AACACACT
s panTro5.chr1                    207999949 16 - 228573443 ------TGAAATCA--AATGCACT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133952 16 - 229774977 ------TGAAATCA--AACGCACT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797819 16 -   8455952 ------TGAAATCA--AACACACT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259703 16 +    297174 ------TGAAATCA--AACACACT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744371 16 - 225584828 ------TGAAATCA--AACATATT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824513 16 + 227556264 ------TGAAATCA--AACACACT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401804 16 -  14060431 ------TGAAATCA--AACACACT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1809122 16 -   2461138 ------TGAAATCA--AACATACT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1010048 16 -   1280666 ------TGAAATCA--AACACACT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492571 16 -   1325925 ------TGAAATCA--AACACACT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3732084 16 -   3775709 ------TGAAACCA--AAAACACT
i colAng1.NW_012114988v1          C 0 I 12
s saiBol1.JH378257                  2802899 24 -   4070394 TGCTATGGATATTGGCAGCCCACT
i saiBol1.JH378257                C 0 C 0
e tarSyr2.ABRT02001635v1                546  0 +      4393 I
e cebCap1.NW_016108146v1             186140 46 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=45878.000000
s hg38.chr1_KI270711v1_random          6920 13 +     42210 CTGGTTTCCCTCA
s panTro5.chr1                    207999965 11 - 228573443 GT--TTTCCCTGG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133968 11 - 229774977 GT--TTTCCCTGG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797835 11 -   8455952 GT--TTTCCCTGG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259719 13 +    297174 CTGTTTTCCCTGA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744387 13 - 225584828 CTGTTTTCCCTGG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824529 13 + 227556264 CTGGTCTCCCTGG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401820 13 -  14060431 CTGGTCTCCCTGG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1809138 13 -   2461138 CTGTTTTCCCTGA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1010064 13 -   1280666 CTGTTTTCCCTGG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492587 13 -   1325925 CTGTTTTCCCTGG
i manLeu1.NW_012105087v1          C 0 C 0
s saiBol1.JH378257                  2802923 13 -   4070394 CTGTTTTCCCTGG
i saiBol1.JH378257                C 0 C 0
e tarSyr2.ABRT02001635v1                546  0 +      4393 I
e colAng1.NW_012114988v1            3732100 12 -   3775709 I
e cebCap1.NW_016108146v1             186140 46 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=52074.000000
s hg38.chr1_KI270711v1_random          6933 9 +     42210 ATCTGTTGC
s panTro5.chr1                    207999976 9 - 228573443 ATCTGTCGT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133979 9 - 229774977 ATCTGTCGT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797846 8 -   8455952 ATCTGT-GT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259732 9 +    297174 ATCTGTCGT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744400 9 - 225584828 ATCTGTCGT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824542 9 + 227556264 ATCTGTCGT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401833 9 -  14060431 ATCTGTCGT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1809151 9 -   2461138 ATCTGTCAT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1010077 9 -   1280666 ATCTGTCGT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492600 9 -   1325925 ATCTGTCGT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3732112 9 -   3775709 ATCTGTCGT
i colAng1.NW_012114988v1          I 12 C 0
s saiBol1.JH378257                  2802936 9 -   4070394 ATCTGGCAT
i saiBol1.JH378257                C 0 C 0
e tarSyr2.ABRT02001635v1                546 0 +      4393 I
e cebCap1.NW_016108146v1             186140 46 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=608395.000000
s hg38.chr1_KI270711v1_random          6942 83 +     42210 CTCCAGGTGTTAACACAGAATTAAGCATCCACAATTGCTGAAAGTTACCTGGGGCATGGTGGGTTTTGATCTTCTTCCCCTTC
s panTro5.chr1                    207999985 83 - 228573443 CTCCAGGTGTTAACACAGAATTAAGCGACCACAGTTGCTGAAAGTTACCTGGGGCATGGTGGGTTTTGATCTTCTTCCCCTTC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208133988 83 - 229774977 CTCCAGGTGTTAACACAGAATTAAACGACCACAGTTGCTGAAAGTTACCTGGGGCATGGTGGGTTTTGATCTTCTTCCCCTTC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797854 83 -   8455952 CTCCAGGTGTTAACACAGAATTAAGCGACCACAATTGCTGAAAGTTACCTGGGGCATGGTGGGTTTTGATCTTCTTCCCCTTC
i gorGor5.CYUI01015145v1          C 0 I 8
s nomLeu3.chr24_GL397604_1_random    259741 83 +    297174 CTCCAGGTGTTAACACAGAATTAAGCATCCACAATTGCTGAAGATTACCTGGGGCATGGTGGGTTCTGATCTTCTTCCCCTTC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744409 83 - 225584828 CTCCAGGTGTTAACACAGAACTAAGCATCCACAATTGCTGAAAGTTACCTGGGGCATGGTGGGTTTTGATCTTCTTCCCCTTC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824551 83 + 227556264 CTCCAGGTGTTAACACAGAACTAAGCATCCACAATTGCTGAAAGTTACCTGGGGCATGGTGGGTTTTGATCTTCTTCCCCTTC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401842 83 -  14060431 TTCCAGGTGTTTACACAGAACTAAGCATCCACAATTGCTGAAAGTTACCTGGGGCATGGTGGGTTTTGATCTTCTTCCCCTTC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1809160 83 -   2461138 CTCCAGGTGTTAAAACAGAACTAAGCATCCACAATTGCTGAAAGTTACCTGGGGCATGGTGGGTTTTGATCTTCTTCCCCTTC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1010086 83 -   1280666 CTCCAGGTGTTAACACAGAACTAAGCATCCACAATTGCTGAAAGTTACCTGGGGCATGGTGGGTTTTGATCTTCTTCCCTTTC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492609 83 -   1325925 CTCCAGGTATTAAGAAAGAATTAAGCGTCCACAATTGCTGAAAGTTACCTGGGGCATGGTGGGTTTTGATCTTCTTCCCCTTC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3732121 83 -   3775709 CTCCAGGTATTAAGAAAGAATTAAGCATCCATAATTGCTGAAAGTTACCTGGGGCATGGTGGGTTTTGATCTTCTTCCCCTTC
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2802945 82 -   4070394 CTCCAGGTGTCAACACATAATTAGCTGTTCACAATTGCTCAGAGTTA-CTGGGGCATGGTGGGCCTTGGTTTTCCTCTTCTTG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             186186 83 +    407294 CTCCAGGTGTCAACACAAAATTAGCTGTTCACAATTACTCAGAGTTACCTGGGGCATGGTGGGCCTTGACCTTCTTCCTCTTC
i cebCap1.NW_016108146v1          I 46 C 0
e tarSyr2.ABRT02001635v1                546  0 +      4393 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=12732.000000
s hg38.chr1_KI270711v1_random          7025 2 +     42210 TT
s panTro5.chr1                    208000068 2 - 228573443 TT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208134071 2 - 229774977 TT
i panPan2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259824 2 +    297174 TT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744492 2 - 225584828 TT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824634 2 + 227556264 TT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401925 2 -  14060431 TT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1809243 2 -   2461138 TT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1010169 2 -   1280666 TT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492692 2 -   1325925 TT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3732204 2 -   3775709 TT
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2803027 2 -   4070394 CT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             186269 2 +    407294 TT
i cebCap1.NW_016108146v1          C 0 I 5
e tarSyr2.ABRT02001635v1                546 0 +      4393 I
e gorGor5.CYUI01015145v1            3797937 8 -   8455952 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=-7532.000000
s hg38.chr1_KI270711v1_random          7027 65 +     42210 TTCTTCCCCTTCTCCTTCTTTTCTTCGTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCCCCTTC
s panTro5.chr1                    208000070  5 - 228573443 ------------------------------------------------------------GGTAC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208134073  5 - 229774977 ------------------------------------------------------------GGTAC
i panPan2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    259826  5 +    297174 ------------------------------------------------------------GGTAC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744494  5 - 225584828 ------------------------------------------------------------GGTAC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824636  5 + 227556264 ------------------------------------------------------------GGTAC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401927  5 -  14060431 ------------------------------------------------------------GGTAC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1809245  5 -   2461138 ------------------------------------------------------------GGTAC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1010171  5 -   1280666 ------------------------------------------------------------GGTAC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492694  5 -   1325925 ------------------------------------------------------------GGTAC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3732206  5 -   3775709 ------------------------------------------------------------GGTAC
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2803029  2 -   4070394 --------------------------------------------------------------TA-
i saiBol1.JH378257                C 0 C 0
e tarSyr2.ABRT02001635v1                546  0 +      4393 I
e gorGor5.CYUI01015145v1            3797937  8 -   8455952 I
e cebCap1.NW_016108146v1             186271  5 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=1321502.000000
s hg38.chr1_KI270711v1_random          7092 184 +     42210 TTTTCAATTTCTGCAATAAATTCAGACATGGACAGACACATTAAGCTGATTCCCCTACACACATAACAATCCACTGTCTAACCCTCACACAGGGACCTCAGGCTCCTCAGCATAAGAATAGGAGAC-TGTGAGAGATATATTTCAGGAGGCCTGAAGGCTGGTCATGATAGAAATTCCTCGGTTT
s panTro5.chr1                    208000075 184 - 228573443 TTTTCAATTTCTGCAATAAACTCAGACACGGACAGACACATTAAGCTGATTCCCCTACACACATAACATTCCACTGTCTAATCCTCACACAGGGACCTCAGGCTCCTCAGCATAAGAATAGGACAC-TGTGAGAGATATATTTCAGGAGGCCTGAAGGATGGTCATGATAGAGATTCCTTGGTTT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208134078 184 - 229774977 TTTTCAATTTCTGCAATAAATTCAGACATGGACAGACACATTAAGCTGATTCCCCTACACACATAACATTCCACTGTCTAATCCTCACACAGGGACCTCAGGCTCCTCAGCATAAGAATAGGACAC-TGTGAGAGATATATTTCAGGAGGCCTGAAGGATGGTCATGATAGAGATTCCTTGGTTT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3797945 183 -   8455952 TTTTCAATTTCTGCAATAAATTCAGACATGGACAGACACATTAAGCTGATTCCCCTACACACATAACATTCCACTGTCTAATCCTCACACAGGGACCTCAGGCTCCTCAGCATAAGAATAGGACAC-TGTGAGAGATATATTTCAGGAGGCCTGAAGGCTGGTCATGATAGA-ATTCCTTGGTTT
i gorGor5.CYUI01015145v1          I 8 C 0
s nomLeu3.chr24_GL397604_1_random    259831 184 +    297174 TTTTCAATTTCTGAAATAAATTCAGACATGGACAGACACATTAAGCTGATTCCCCTACACACATAACAATCCACTGTCTAATCCTCACACTGGGACCTCAGGCTCCTCAGCATAAGAATAGGACAC-TGTGGGAAATATATTTCAGGAGGCCTGAAGGCTGCTCATGATAGAGATTCCTTGGTTT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744499 183 - 225584828 TTTTCAATTTCTGCAATAAATTCAGACATGGACAGACACATTAAGCTGATTCCCCTACACACAT-ACAATCCACTGTCTAATCCTCACACAGGGACCTCAGGCGCCTCAGCATGAGAATACGACAC-TGTGAGAGACATATTTCCAGAGGCCTGAAGGCTGGTCATGATAGAGATTCCTTGGTTT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824641 183 + 227556264 TTTTCAATTTCTGCAATAAATTCAGACATGGACAGACACATTAAGCTGATTCCCCTACACACAT-ACAATCCACTGTCTAATCCTCACACAGGGACCTCAGGCGCCTCAGCATGAGAATACGACAC-TGTGAGAGACATATTTCCGGAGGCCTGAAGGCTGGTCATGATAGAGATTCCTTGGTTT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11401932 182 -  14060431 TTTTCAATTTCTGCAATAAATTCAGACATGGACAGACACATTAAGCTGATTCCCCTACACACAC-ACAATCCACTGTCT-ATCCTCACACAGGGACCTCAGGCGCCTCAGCATGAGAACACGACAC-TGTGAGAGACATATTTCCAGAGGCCTGAAGGCTGGTCATGATAGAGATTCCTTGGTTT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1809250 184 -   2461138 TTTTCAATTTCTGCAATAAATTCAGACATGGACAGACACGTAAAGCTGATTCTCCTACACACAT-ACAATCCACTGTCTAATCCTCACACAGGGACCTCAGGCGCCTCGGCATGAGAAGAGGACACTTGTGAGAGAGATATTTCCGGAGGCCTGAAGGCTGGTCATGATAGAGATTCCTTGGTTT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1010176 183 -   1280666 TTTTCAGTTTCTGCAATAAATTCAGACATGGACAGACACATTAAGCTGATTCCCCTACACACAT-ACAATCCACTGTCTAATCCTCACACAGGGACCTCAGGCGCCTCAGCATGAGAATACAACAC-TGTGAGAGATATATTTCCGGAGGCCTGAAGGCTGGTCATGATAGAGATTCCTTGGTTT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492699 183 -   1325925 TTTTCAATTTCTGCAATAAATTCAGACATGGACAGACACATTAAGCTGATTCCCCTACACACAT-ACAATCCACTGTCTAATCCTCACACAGGGACCTCAGGCGCCTCAGCATGAGAATACAACAC-TGTGAGAGACATATTTCCAGAGGCCTGAAGGCTGGTCATGATAGAGATTCCTTGGTTT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3732211 174 -   3775709 TTTTCAATTTCTGCAATAAATT----------CAGACACATGAAGCTGATTCCCCTACACACATAACAATCCACTGTCTAATCCTTACACAGGGACCTCAGGCTCCTCAGCATAAGAATAGGACAC-TGTGGGAGATACATTTCAGGAGGCCTGAAGGCTGGTCATGATAGAGATTCCTTGGTTT
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2803031 183 -   4070394 -TTTTAATCTCTGCAATAAATTCAGACAGGGACAGACAAAATAAGCCAATTCCCCTACACCCGCAACAGTCCACTGTCTGATCCCTGCACAGGGACCTCAGGCTCCTCAGCATGAGAACAGGACAA-TGTGAGAGACAGACTTCAGGAGGTCCCGAGGCCAATCATGATAGAGATTCCTTGGTTT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             186276 184 +    407294 TTTTTAATCTCTGCAATAAATTCAGACAGGGACAGACAAAATAAGCCAATTCCCCTACACCCATAACAGTCCACTGTCCAATCCCTGCACAGAGACCTCAGGCTCCCCAGCATGAGAACAGGATAA-TGTTAGAGATGGACTTCAGGAGGTCTGAAGGCCAATCATGATAGAGATTCCTTGGTTT
i cebCap1.NW_016108146v1          I 5 I 76964
e tarSyr2.ABRT02001635v1                546   0 +      4393 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=495141.000000
s hg38.chr1_KI270711v1_random          7276 83 +     42210 TTCTCCCAGAAACT--GTGGGTAAAATGTCCCTATTCTAGTAGATCGTTATCCCAATATCATTTGTCCCGAGTTTGTGCAAACAG
s panTro5.chr1                    208000259 83 - 228573443 TTGTCCCAGAAACT--AAGGGTAAAATGTCCCTATTCTGGTAGATCATTATCCCAATATCATTTGTCCCAAGTTTGTGCAAACGG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208134262 83 - 229774977 TTGTCCCAGAAACT--AAGGGTAAAATGTCCCTATTCTGGTAGATCATTATCCCAATATCATTTGTCCCAAGTTTGTGCAAACGG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3798128 82 -   8455952 TTCT-CCAGAAACT--AAGGGTAAAATGTCCCTATTCTGGTAGATCGTTATCCCAATATCATTTGTCCCAAGTTTGTGCAAACGG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260015 83 +    297174 TTGTCCCAGAAACT--AACGGTAAAAAGTCCATGTTCTGGTAGATCGTTATCCCAATATCATTTGTCCCAAGTTTGTGCAAATGG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744682 83 - 225584828 TTGTCCCAGAAACT--GTGGGTAAAATGTCCCTATTCTGGCAGATCGTTATCCCAATATCATTTGTCACAAGTTTGTGCAAATGG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824824 85 + 227556264 TTGTCCCAGAAACTTCGTGGGTAAAATGTCCCTATTCTGGTAGATCGTTATCCCAATATCATTTGTCCCAAGTTTGTGCAAATGG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11402114 83 -  14060431 TTGTCCCAGAAACT--GTGGGTAAAATGTCCCTATTCTGGTAGATCGTTATCCCAATATCATTTGTCACAAGTTTGTGCAAATGG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1809434 83 -   2461138 TTGTCCCAGAAACT--GTGGGTAAAATGTCCCTATTCTGGCAGATCGTTATCCCAATATCATTTGTCACAAGTTTGTGCAAATGG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1010359 83 -   1280666 TTGTCCCAGAAACT--GTGGGTAAAGTGTCCCTATTCTGGTAGATCGTTATCCCAATATCATTTGTCACAAGTTTGTGCAAATGG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492882 83 -   1325925 TTGTCCCAGAAACT--GTGGGTAAAATGTCCCTATTCTGGCAGATCGTTATCCCAATATCATTTGTCACAAGTTTGTGCAAATGG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3732385 83 -   3775709 TTGTCCCAGAAGCT--AAGGGTAAAATGTCCCTTTTCTGCTAGATCGTTATCCCAGTATCATTTGTCCCAAGTTTGTGCAAATGG
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2803214 75 -   4070394 GTGTCTCAGAA-CC--AATGGTGAAATGTCCCTATTCTGGTAGACCATTAACCT-------TTTATCCCAAGTTTGTATAAACAG
i saiBol1.JH378257                C 0 I 117
e tarSyr2.ABRT02001635v1                546  0 +      4393 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=900836.000000
s hg38.chr1_KI270711v1_random          7359 165 +     42210 TTATGCCATATTTTTCCAATCAATTTAAAGCAAATACCCTCAAATGATTTCTAGGAGAAAAACTGCAATATTTAGCCCTGTCTCATCAAATACTCAGATTGTTCATGGTTGTGAGGACTTTAGACACTGAAATTAGAGTGAAAAAGGAAATCTACAAACCCTTGA
s panTro5.chr1                    208000342 165 - 228573443 TTATGCCATATCTTTCCAATCAATTTAAAGCAAATGCCCTCAAACGATTTCTAGGAGAAAAACTGCAATATTCAGCCCTGTCTCATCAAATACTCAGATTGTTCATGGTTGTGAGGATTTTAGACACTGAAATTAGAGTGAGAAAGGAAATCTACAAACCCTTGA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208134345 165 - 229774977 TTATGCCATATCTTTCCAATCAATTTAAAGCAAATGCCCTCAAACGATTTCTAGGAGAAAAACTGCAATATTCAGCCCTGTCTCATCAAATACTCAGATTGTTCATGGTTGTGAGGATTTTAGACACTGAAATTAGAGTGAGAAAGGAAATCTACAAACCCTTGA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3798210 163 -   8455952 TTATGCCATAT-TTTCCAATCAATTTAAAGCAAATGCCCTCAAATGATTTCTAGGAGAAAAACTGCAATATTCAGCCCTGTCTCATCAAATACTCAGATTGTTCATGGTTGTGAGGATTTTAGACACTGAAATTAGAGTGA-AAAGGAAATCTACAAACCCTTGA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260098 151 +    297174 TTATGCCATATTTTTCCAATCAATTTAGAGCACATGCCCTCAAATGATTTCTAGGAGAAAAACTGCAATAATCAGCCCTGTTTCATCAAACACTCAGGTTGTTCATGCTTGTGAGGATTTT--------------GAGTGAAAAAGGAAATCTACAAACCCTTGA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744765 165 - 225584828 TTATGCCATATTTTTCCAATCAATTTAAAGCAAATACCCTCAAAAGACTTCTAGGAGAAAAACTGCAATATTTAGCCCTGTCTCATCAAATACTCAGATTGTTCATGGTTGTGAGGATTTTAGACACTAAAATTAGAGTGAAAAAGGAAATCGACAAACCCTTGA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211824909 165 + 227556264 TTATGCCATATTTTTCTAATCAATCTAAAGCAAATGCCCTCCAATGATTTCTGGGAGAAAAACTGTAATATTTAGCCCTGTCTCATCAAATACTCAGATTGTTCAAGGTTGTGAGGATTTTAGACACTGAAATTACAGTGGAAAAGGAAATCTACAAACCCTTGA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11402197 165 -  14060431 TTATGCCATATTTTTCTAATCAATCTAAAGCAAATGCCCTCCAATGATTTCTGGGAGAAAAACTGTAATATTTAGCCCTGTCTCATCAAATACTCAGATTGTTCAAGGTTGTGAGGATTTTAGACACTGAAATTACAGTGGAAAAGGAAATCGACAAACCCTTGA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1809517 165 -   2461138 TTATGCCATATTTTTCCAATCAATTTAAAGCAAATACCCTCAAAAGACTTCTAGGAGAAAAACTGCAATATTTAGCCCTGTCTCATCAAATACTCAGATTGTTCATGGTTGTGAGGATTTTAGACACTAAAATTAGAGTGAAAAAGGAAATCGACAAACCCTTGA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1010442 165 -   1280666 TTATGCCATATTTTTCCAATCAATTTAAAGCAAATGCCCTCAAATGATTTCTAGGAGAAAAACTGCAATATTCAGCCCTGTCTCATCAAATACTCAGATTGTTCATGGTTGTGAGGATTTTAGACACTAAAATTAGAGTGAAAAAGGAAATCGACAAACCCTTGA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             492965 165 -   1325925 TTATGCCATATTTTTCCAATCAATTTAAAGCAAATACCCTCAAAAGACTTCTAGGAGAAAAACTGCAATATTTAGCCCTGTCTCATCAAATACTCAGATTGTTCATGGTTGTGAGGATTTTAGACACTAAAATTGGAGTGAAAAAGGAAATCGACAAACCCTTGA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3732468 164 -   3775709 TTATGCTGTATTTTTCCAATCAATTTAAAGCAAATGCCCTCAAATGATTTCTAGGAGAAAAACTGCACTATTCAGCCCTGTCTCATTAAATACTCAGATTGTTCATGGTTGTGAGGATTTTAGACACTGAAATTAGAGTGAGAAAGGAAATCTACAAA-CCTTGA
i colAng1.NW_012114988v1          C 0 C 0
e tarSyr2.ABRT02001635v1                546   0 +      4393 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e saiBol1.JH378257                  2803289 117 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=14871.000000
s hg38.chr1_KI270711v1_random          7524 8 +     42210 GTCAAAA-T
s panTro5.chr1                    208000507 8 - 228573443 GTCAAAA-T
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208134510 8 - 229774977 GTCAAAA-T
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3798373 8 -   8455952 GTCAAAA-T
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260249 8 +    297174 GTCAAAA-T
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744930 7 - 225584828 GTCAAAT--
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211825074 7 + 227556264 GTCAAAT--
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11402362 7 -  14060431 GTCAAAT--
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1809682 7 -   2461138 GTCAAAT--
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1010607 7 -   1280666 GTCAAAT--
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             493130 7 -   1325925 GTCAAAT--
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3732632 8 -   3775709 GTCAAAAT-
i colAng1.NW_012114988v1          C 0 C 0
s rhiBie1.NW_016827918v1              57827 8 -    577598 ATCAAAAT-
i rhiBie1.NW_016827918v1          N 0 N 0
e tarSyr2.ABRT02001635v1                546 0 +      4393 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e saiBol1.JH378257                  2803289 117 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=58619.000000
s hg38.chr1_KI270711v1_random          7532 10 +     42210 CATAGTTCTC
s panTro5.chr1                    208000515 10 - 228573443 CATAGTTCTC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208134518 10 - 229774977 CATAGTTCTC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3798381 10 -   8455952 CATAGTTCTC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260257 10 +    297174 CATAGTTCTC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744937 10 - 225584828 CATAGTTCTC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211825081 10 + 227556264 CATAGTTCTC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11402369 10 -  14060431 CATAGTTCTC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1809689 10 -   2461138 CATAGTTCTC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1010614 10 -   1280666 CATAGTTCTC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             493137 10 -   1325925 CATAGTTCTC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3732640 10 -   3775709 CGTACTTCTC
i colAng1.NW_012114988v1          C 0 C 0
e tarSyr2.ABRT02001635v1                546  0 +      4393 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e saiBol1.JH378257                  2803289 117 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=1378729.000000
s hg38.chr1_KI270711v1_random          7542 229 +     42210 TGAATTTGTCACATCTGCCCAGG--TCCAATGTCATGAGAGTAGAATCAGAGTGCCACAGGCATGGCCTGAGACTAGGAAGAGAGCCATGCTCACTGACCCATCCCATGTCTGGGCTTCCAGTTAGAA-CTAGAGT--TTCATTCAACCTACATGTGCCTACAGGTCCTCACTGCAGCAATGACATCTCTCAGCTC---------AGTAATGGCCACTTGGAGCAGGAATATGATCTTTATAT
s panTro5.chr1                    208000525 229 - 228573443 TGAATTTGTCCCATCTGCCCAGG--TCCAATGCCTTGAGAGTAGAATCACAGTGCCACAGGCATGGCCTGAGACTAGGAAGAGAGCCACGCTCACTGACCCATCCCATGTCTGGGCTTCCAGTTAGAA-CTAGAGT--TTCGTTCAACCTATATGTGCCTATAGGTCCTCAGTGCAGCAATGACATCTCTCAGCTC---------AGTAACAGCCTCTTAGAGCAGGAATATGATCTCTATAC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208134528 229 - 229774977 TGAATTTGTCCCATCTGCCCAGG--TCCAATGCCTTGAGAGTAGAATCACAGTGCCACAGGCATGGCCTGAGACTAGGAAGAGAGCCACGCTCACTGACCCATCCCATGTCTGGGCTTCCAGTTAGAA-CTAGAGT--TTCGTTCAACCTATATGTGCCTATAGGTCCTCAGTGCAGCAATGACATCTCTCAGCTC---------AGTAACAGCCTCTTAGAGCAGGAATATGATCTCTATAC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3798391 227 -   8455952 TGAATTTGTC-CATCTGCCCAGG--TCCAATG-CTTGAGAGTAGAATCAGAGTGCCACAGGCATGGCCTGAGACTAGGAAGAGAGCCATGCTCACTGACCCATCCCATGTCTGGGCTTCCAGGTAGAA-CTAGAGT--TTCATTCAACCTATATGTGCCTATAGGTCCTCACTGCAGCAATGACATCTCTCAGCTC---------AGTAACGGCCACTTGGAGCAGGAATATGATCTCTATAC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260267 227 +    297174 TGAATTTGTCACATCTGCCCAGG--TCCAATGTCTTGAGAGTAGAATCAGAGTGCCACAGGCATGGCCTGAGATGAGGAAGAGAGCCATGCTCACTGACCCATCCCATGTCTGGGCTTCCAGGTAGAA-CTAGAGT--TTCATTCAACCT--ATGTGCCTATAGGTCCTCACTGCAGCAATGACATCTCTCAGCTC---------AGTAACGGCCACTTGGAGCAGGAATATGATCTCTATAT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103744947 229 - 225584828 TGAATTTGTCACATCTGCCCAGG--TCCAATGTCTTGAGAGTAGAATCAGAGTGACACAGGCATGGCCTGAGACTAGGAAGACAGCCATGCTCACTGACCAATCCCATGTCTGGGCTTCCAGGTAGAA-CTAGAGT--TTCATTCAACCTACATGTGCCTACAGGTCCTCACTGCAGCAATGACATCTCTCAGCTC---------AGTAACGGCCACTTGGAGCAGGAATATGATCTCTATAT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211825091 229 + 227556264 TGAATTTGTCACATCTGCCCAGG--TCCATTGTCATGAGAGTAGAATCAGAGTGACACAGGCATGGCCTGAGACTAGGAAGACAGCCATGCTCACTGACCAATCCCATGTCTGGGCTTCCAGGTAGAA-CTAGAGT--TTCATTCAACCTACATGTGCCTACAGGTCCTCACTGCAGCAATGACATCTCTCAGCTC---------AGTAACTGTCATTTGGAACAGGAATATGATCTCTATAT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11402379 229 -  14060431 TGAATTTGTCACATCTGCCCAGG--TCCAATGTCTTGAGAGTAGAATCAGAGTGCCACAGGCATGGCCTGAGACTAGGAAGACAGCCATGCTCACTGACCAATCCCATGTCTGGGCTTCCAGGTAGAA-CTAGAGT--TTCATTCAACCTACATGTGCCTACAGGTCCTCACTGCAGCAATGACATCTCTCAGCTC---------AGTAACTGTCATTTGGAACAGGAATATGATCTCTATAT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1809699 229 -   2461138 TGAATTTGTCACATCTGCCCAGG--TCCAATGTCTTGAGAGTAGAATCAGAGTGACACAGGCATGGCCTGAGACTAGGAAGACAGCCATGCTCACTGACCAATCCCATGTCTGGGCTTCCAGGTAAAA-CTAGAGT--TTCATTCAACCTACATGTGCCTACAGGTCCTCACTGCAGCAATGACATCTCTCAGCTC---------AGTAACGGCCACTTGGAGCAGGAATACGATCTCTATAT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1010624 224 -   1280666 TGAATTTGTCACATCTGCCCAGG--TCCAATGTCTTGAGAGTAGAATCAGAGTGCCACAGGCATGGCCTGAGACTAGGAAGACAGCCATGCTCACTGACCAATCCCATGTCTGGGCTTCCAGGTAGAA-CTAGAGT--TT-----AACCTACATGTGCCTACAGGTCCTCACTACAGCAATGACATCTCTCAGCCC---------AGTAACGGCCACTTGGAGCAGGAATATGATCTCTATAT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             493147 229 -   1325925 TGAATTTGTCACATCTGCCCAGG--TCCAATGTCTTGAGAGTAGAATCAGAGTGACACAGGCATGGCCTGAGACTAGGAAGACAGCCATGCTCACTGACCAATCCCATGTCTGGGCTTCCAGGTAGAA-CTAGAGT--TTCATTCAACCTACATGTGCCTACAGGTCCTCACTGCAGCAATGACATCTCTCAGCTC---------AGTAACGGCCACTTGGAGCAGGAATATGATCTCTATAT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3732650 229 -   3775709 TGAATTTGTTACATCTGCCCAGG--TCCAATGTCATGAGAGTAGAATCAGAGCGCCAAAGGCATGGCCTGAGACTAGGGAGAGAGCCATGCTCACTGACCCATCCCATGTCTGGGCTTCCAGTTGGAA-CTAGAGC--TTCATTGAACCTACATGTGCCTATAGGTCCTCACTGCAGCAATGACATCTCTCAACTC---------ACTAACGGCCACTTGGAATAGGAATATGATCTCTATAC
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2803406 232 -   4070394 TGAGTGCGCAACACCTGCCTTGGGCTTCAATGTCCTGACAGTCGGTCCAGGGTGCGACGGGCATGGCCTGAGACTAGAGAGAAAGCAAAGCTCACTGACCCACCCCATGTCCATGCTTCAGACTGGAATCCAGAGTGATTGA---AATCTACACTGATTTACAGGTTCAGTCCACAGTGATGACAACTCTCAGCCCGGCCAGGGGAGCAACGCCCA--------AAGACTATGGGGTCTATCT
i saiBol1.JH378257                I 117 I 256
e tarSyr2.ABRT02001635v1                546   0 +      4393 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=669396.000000
s hg38.chr1_KI270711v1_random          7771 128 +     42210 GGAAGACTCAGTGGATCCTTATCACCTTCATAGAAAGGTACTCACCTCCCACGTCAAGAGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGAACTTCCATAGGGCAGGCAGGAGTCAGGCTGT
s panTro5.chr1                    208000754 128 - 228573443 GGAAAACTCAGTGGATCCTTATCACCTTCATAGAAAGGTACTCACCATCCACGTCAAGAGAAAAGCCAACGTGTTCTTCCTCCAATGAGTGAAAGCAACTTCCGTAGGGCTGGCATGAATCAGGCAGT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208134757 128 - 229774977 GGAAAACTCAGTGGATCCTTATCACCTTCATAGAAAGGTACTCACCATCCACGTCAAGAGAAAAGCCAACGTGTTCTTCCTCCAATGAGTGAAAGCAACTTCCGTAGGGCTGGCATGAATCAGGCAGT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3798618 123 -   8455952 GGAA-ACTCAGTGGA-CCTTATCACCTTCATAGAAAGGTACTCACC-TCCACGTCAAGAGAAAAGCCAAC-TGTT-TTCCTCCAATGAGTAAAAGCAACTTCCGTAGGGCTGGCATGAATCAGGCAGT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260494 128 +    297174 GGAAGACTCAGTGGATCCTTATTGCCTTCATAGAAAGATACTCACCATCCACATCAAGAGAAAAGCCAACGTGTTGTTCCTCCAATGAGTAAAAGGAACTTCCATAGGGCTGGCATGAGTCAGGCAGT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103745176 128 - 225584828 GGAAGACTCAGTGGATCCTTATCACCTTCATAGAAAGGTACTCACCATCCACATCAAGAGAAAAGCCAATGTGTTGTTCCTCCAGTGAGTAAAAGAAATTTCTGTAGGGCTGGCAGGAGTCAGGCAGT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211825320 128 + 227556264 GGAAGACTCAGTGGATCCTCATCACCTTCATAGAAAGGTACTCACCATCCACATCAAGAGAAAAGCCAGTGTGTTATTCCTCCAGTGAGTAAAAGAAATTTCTGTAGGGCTGGCAGGAGTCAGGCAGT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11402608 128 -  14060431 GGAAGACTCAGTGGATCCTCATCACCTTCATAGAAAGGTACTCACCATCCACAACAAGAGAAAAGCCAGTGTGTTATTCCTCCAGTGAGTAAAAGAAATTTCTGTAGGGCTGGCAGGAGTCAGGCAGT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1809928 128 -   2461138 GGAAGACTCAGTGGATCCTTATCACCTTCATAGAAAGGTACTCACCATCCACATCAAGAGAAAAGCCAATGTGTTGTTCCTCCAGTGAGTAAAAGAAATTTCTGTAGGGCTGGCAGGAGTCAGGCAGT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1010848 128 -   1280666 GGAAGACTCAGTGGATCCTTTTCACCTTCATAGAAAGGTACTCACCATCCACATCAAGAGAAAAGTCAATGTGTTGTTCCTCCAGTGAGTAAAAGAAATTTCTGTAGGGTTGGCAGGAGTCAGGCAGT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             493376 128 -   1325925 GGAAGACTCAGTGGATCCTTATCACCTTCATAGAAAGGTACTCACCATCCACATCAAGAGAAAAGCCAATGTGTTGTTCCTCCAGTGAGTAAAAGAAATTTCTGTAGGGCTGGCAGGAGTCAGGCAGT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3732879 128 -   3775709 AGAACACTCAGTGGATCCTTATCACCTTCAGAGAAAGGTACTCACCATCCACGCCAAGAGAAAAGCCAACGTGTTGTTCCTCCAATGAGTAAAAGGAATTTTCCTGGGGATGGCATGAATCGGGAAGC
i colAng1.NW_012114988v1          C 0 C 0
e tarSyr2.ABRT02001635v1                546   0 +      4393 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e saiBol1.JH378257                  2803638 256 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=745797.000000
s hg38.chr1_KI270711v1_random          7899 129 +     42210 TCAAGACAACTGGAAGGAGTTGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGCTCTACTGCCTCCAGCAGCTCCCTGCTGAGCCTGGAAAAGGAGGAAAAAGTAAAGAATAAGCCAGGGGAA
s panTro5.chr1                    208000882 128 - 228573443 TCTGGATAACTGAAAGGAGTCGAATACCATCTATCCAGTGAGTCCTGCAAGTCCTCAGGCTCTACTACCTCCGGCAGCTCTCTGCTGAGCCTGGAAAAGTA-GAAAAAGTAAAGAATAAGCCAGGGGAA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208134885 128 - 229774977 TCTGGATAACTGAAAGGAGTCGAATACCATCTATCCAGTGAGTCCTGCAAGTCCTCAGGCTCTACTACCTCCGGCAGCTCTCTGCTGAGCCTGGAAAAGTA-GAAAAAGTAAAGAATAAGCCAGGGGAA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3798741 128 -   8455952 TCAAGATAACTG-AAGGAGTCGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGCTCTACTACCTCCAGCAGCTCCCTGCTGAGCCTGGAAAAGTAGGAAAAAGTAAAGAATAAGCCAGGGGAA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260622 128 +    297174 TCAAGACAACTGGAAGGTGTCAAATAACTTCTATCCAGTGAGTCCTGCAAAACTTCAGACTCTACTACCTTCAGCAGCTCTCTGCTGAGCCTGCAAAAGTA-GAAAACCTAAAGAATAAGCCAGGGGAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103745304 128 - 225584828 TCAAGATAACTGGAAGGAGATGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGATCTACTACCTCCAGTAGCTCCCAGCTGAGACTGGAAAAATA-GAAAAAGTAAAGAATAAGCCAGAGGAA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211825448 128 + 227556264 TCAAGATAACTGGAAGGAGTTGAATAACATCTATCCAGTGAGTTCTGCAAGACTTCAGGATCTACTAACTCCAGCAGCTCCCTGCTGAGCCTGGAAAAGTA-GAAAAAGTAAAGAACAAGCCAGGGGAA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11402736 128 -  14060431 TCAAGATAACTGGAAGGAGTTGAATAACATCTATCCAGTGAGTTCTGCAAGACTTCAGGATCTACTAACTCCAGCAGCTCCCTGCTGAGCCTGGAAAAGTA-GAAAAAGTAAAGAACAAGCCAGGGAAA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1810056 128 -   2461138 TCAAGATAACTGGAAGGAGATGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGATCTACTACCTCCAGTAGCTCCCAGCTGAGACTGGAAAAATA-GAAAAAGTAAAGAATAAGCCAGAGGAA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1010976 128 -   1280666 TCAAGATAACTGGAAGGAGATGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGATCTACTACCTCCAGTAGCTCCCTGCTGAGACCAGAAAAGTA-GAAAAAGTAAAGAATAAGCCAGAGGAA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             493504 128 -   1325925 TCAAGATAACTGGAAGGAGATGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGATCTACTACCTCCAGTAGCTCCCAGCTGAGACCGGCAAAATA-GAAAAAGTAAAGAATAAGCCAGAGGAA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3733007 128 -   3775709 TCAAGATAACTGTAAGGAGTCGAACAACATCCATCCAGTGAGTCCTGCAAGACTTCAGGCTCTACTACCTCCAGCAGCTCTCTGCTGAGTCTGGAAAAGTA-GAAAAAGTAAAGAATAAGTCAGGAGAA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3625244 129 +  47448759 TCAAGATAAGCTGTATATGTTGAATACAATATATCCAGTGAGTACCAGAAGACTTCAGGCTCTTCTGCTTCCACCAGCTCCATGCTGAGCCTAAAAAAGGAGGAAAAACCAAAGAATAAGTCAGGGAAA
i calJac3.chr18                   N 0 C 0
e tarSyr2.ABRT02001635v1                546   0 +      4393 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e saiBol1.JH378257                  2803638 256 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=52410.000000
s hg38.chr1_KI270711v1_random          8028 10 +     42210 ATCAGACACA
s panTro5.chr1                    208001010  8 - 228573443 ATC--ACACC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135013  8 - 229774977 ATC--ACACC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3798869 10 -   8455952 ATCAGACACC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260750 10 +    297174 ATCAGACACA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103745432 10 - 225584828 ATCAGACACA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211825576 10 + 227556264 ATCAGACACA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11402864 10 -  14060431 ATCAGACACA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1810184 10 -   2461138 ATCAGACACA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1011104 10 -   1280666 ATCAGACACA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             493632 10 -   1325925 ATCAGACATA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3733135 10 -   3775709 ATCAGACACA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3625373 10 +  47448759 ATAAGACACC
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2803894 10 -   4070394 ATTAGACAAC
i saiBol1.JH378257                I 256 C 0
e tarSyr2.ABRT02001635v1                546  0 +      4393 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=47796.000000
s hg38.chr1_KI270711v1_random          8038 7 +     42210 ACAGAGC
s panTro5.chr1                    208001018 7 - 228573443 ACAGAGC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135021 7 - 229774977 ACAGAGC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3798879 7 -   8455952 ACAGAGC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260760 7 +    297174 ACCGAGC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103745442 7 - 225584828 ACAGAGC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211825586 7 + 227556264 ACAGAGC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11402874 7 -  14060431 ACAGAGC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1810194 7 -   2461138 ACAGAGC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1011114 7 -   1280666 ACAGAGC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             493642 7 -   1325925 ACAGAGC
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    110450278 7 - 215897965 CCAATGC
i nasLar1.chr1                    N 0 I 577
s colAng1.NW_012114988v1            3733145 7 -   3775709 ACAGAGC
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3625383 7 +  47448759 GCAGAGC
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2803904 7 -   4070394 AGAGTCT
i saiBol1.JH378257                C 0 C 0
e tarSyr2.ABRT02001635v1                546 0 +      4393 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=330893.000000
s hg38.chr1_KI270711v1_random          8045 50 +     42210 CCCAACTAGGTTTCATGGGTAGCATAAGGAAGTGGT-TGAAAAAGTAAAAG
s panTro5.chr1                    208001025 50 - 228573443 CCCAACTAGATTTCATGGGTAGCATTAGGAAGTGGT-TAAAAAAGAAAAAG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135028 50 - 229774977 CCCAACTAGATTTCATGGGTAGCATTAGGAAGTGGT-TAAAAAAGAAAAAG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3798886 50 -   8455952 CCCAACTAGATTTCATGGGTAGCATAAGGAAGTGGT-TAAAAAAGAAAAAG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260767 50 +    297174 CCCAATTAGATTTCATGGGTAGCATAAGGAAGTGGC-TAAAAAAGAAAAAG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103745449 50 - 225584828 CTCAACTGGATTTCATGGGTAGCATTAGGAAGTGGT-TAAAAAAGAAAAAG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211825593 50 + 227556264 CTCAACTGGATTTCATGGGTAGCATAAGGAAGTGGT-TAAAAAAGAAAAAG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11402881 50 -  14060431 CTCAACTGGATTTCATGGGTAGCATAAGGAAGTGGT-TAAAAAAGAAAAAG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1810201 50 -   2461138 CTCAACTGGATTTCATGGGTAGCATTAGGAAGTGGT-TAAAAAAGAAAAAG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1011121 50 -   1280666 CTCAACTGAATTTCATGGGTAGCATTTGAAAGTGGT-TAAAAAAGAAAAAG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             493649 50 -   1325925 CTCAACTGGATTTCATGGGTAGCATTAGGAAGTGGT-TAAAAAAGAAAAAG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3733152 50 -   3775709 CCCAACTAGATTTTATGGGTAGCATAAGGAAGTGGG-CAAGAAAGAAAAAT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3625390 50 +  47448759 CCCAACTAGATTTCATGGGTAGCACAAGAAAGTGGT-TGATAAAGAAAAAA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2803911 50 -   4070394 CCCAGCT-GATCTGATGGACGTCAGAACGGAGTGGTCCCAGAAAGCAAAGG
i saiBol1.JH378257                C 0 T 1293
e nasLar1.chr1                    110450285 577 - 215897965 I
e tarSyr2.ABRT02001635v1                546  0 +      4393 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=11186.000000
s hg38.chr1_KI270711v1_random          8095 3 +     42210 GAG
s panTro5.chr1                    208001075 3 - 228573443 GAT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135078 3 - 229774977 GAT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3798936 3 -   8455952 GAT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260817 3 +    297174 GAT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103745499 3 - 225584828 GAG
i rheMac8.chr1                    C 0 I 6155
s macFas5.chr1                    211825643 3 + 227556264 GAT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11402931 3 -  14060431 GAT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1810251 3 -   2461138 GAG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1011171 3 -   1280666 GAG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             493699 3 -   1325925 GAG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3733202 3 -   3775709 GAT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3625440 3 +  47448759 CAT
i calJac3.chr18                   C 0 C 0
e nasLar1.chr1                    110450285 577 - 215897965 I
e tarSyr2.ABRT02001635v1                546 0 +      4393 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e saiBol1.JH378257                  2803961 1293 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=8484.000000
s hg38.chr1_KI270711v1_random          8098 2 +     42210 AG
s panTro5.chr1                    208001078 2 - 228573443 AC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135081 2 - 229774977 AC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3798939 2 -   8455952 AG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260820 2 +    297174 AG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103751657 2 - 225584828 AG
i rheMac8.chr1                    I 6155 C 0
s macFas5.chr1                    211825646 2 + 227556264 AG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11402934 2 -  14060431 GG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1810254 2 -   2461138 AG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1011174 2 -   1280666 AG
i chlSab2.chr20_KE148050v1_random C 0 I 3806
s manLeu1.NW_012105087v1             493702 2 -   1325925 AG
i manLeu1.NW_012105087v1          C 0 I 6416
s colAng1.NW_012114988v1            3733205 2 -   3775709 AG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3625443 2 +  47448759 AG
i calJac3.chr18                   C 0 C 0
e nasLar1.chr1                    110450285 577 - 215897965 I
e tarSyr2.ABRT02001635v1                546 0 +      4393 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e saiBol1.JH378257                  2803961 1293 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=3785.000000
s hg38.chr1_KI270711v1_random          8100 1 +     42210 A
s panTro5.chr1                    208001080 1 - 228573443 A
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135083 1 - 229774977 A
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3798941 1 -   8455952 A
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260822 1 +    297174 G
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103751659 1 - 225584828 A
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211825648 1 + 227556264 A
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11402936 1 -  14060431 A
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1810256 1 -   2461138 A
i cerAty1.NW_012001440v1          C 0 I 5748
s colAng1.NW_012114988v1            3733207 1 -   3775709 A
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3625445 1 +  47448759 A
i calJac3.chr18                   C 0 C 0
e nasLar1.chr1                    110450285 577 - 215897965 I
e tarSyr2.ABRT02001635v1                546 0 +      4393 I
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e saiBol1.JH378257                  2803961 1293 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=49227.000000
s hg38.chr1_KI270711v1_random          8101 16 +     42210 TCCATTAATGAGGTAA
s panTro5.chr1                    208001081 16 - 228573443 TCCATTAATGAGGTAA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135084 16 - 229774977 TCCATTAATGAGGTAA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3798942 16 -   8455952 TCCATTAATGAGGTAA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260823 16 +    297174 CCCATTAATGAGGTAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103751660 16 - 225584828 TCCATCAATGATGTTA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211825649 16 + 227556264 TTCATTAATGAGGTAA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11402937 16 -  14060431 TTCATTAATGAGGTAA
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3733208 16 -   3775709 TCACTGAAGGAGGTAA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3625446 16 +  47448759 TCCACTAATGACGTAA
i calJac3.chr18                   C 0 C 0
e nasLar1.chr1                    110450285 577 - 215897965 I
e tarSyr2.ABRT02001635v1                546  0 +      4393 I
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e saiBol1.JH378257                  2803961 1293 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=151391.000000
s hg38.chr1_KI270711v1_random          8117 61 +     42210 -CAAATTATTGCTTTCATGTTGGGACAGAACAGGGCCAAATGGAAA-AGAATGAAAGAGAAAG
s panTro5.chr1                    208001097 60 - 228573443 -CAAATTATTGCCCTCA-GTTGGGATGGCACAGGGCCaaacagaaa-agaatgaaagagaaag
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135100 60 - 229774977 -CATATTATTGCCCTCA-GTTGGGATGGCACAGGGCCAAACAGAaa-agaatgaaagagaaag
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3798958 57 -   8455952 -CA-ATTATTGCCTTCA-GTTGGGAT-GAACAGGGCCAaa-agaaa-agaatgaaagagaaag
i gorGor5.CYUI01015145v1          C 0 I 36
s nomLeu3.chr24_GL397604_1_random    260839 61 +    297174 -CAAATTATAGCCTTCATGTTGGGACAGAACAGGGCCAAATGGAaa-agaaagaaagacaaag
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103751676 61 - 225584828 -CAAACTATTGCCTTTATGTTGTGATAGACCACGGCCAGGTAGAAA-AGAATGAAAGAGAAGG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211825665 61 + 227556264 -CAAATTATTGCCTTCAATATGGGACACAACAGAGCCAAATGGAAA-AGAATGAAAGagacag
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11402953 61 -  14060431 -CAAATTATTGCCTTCAATATGGGACACAACAGAGCCAAATGGAaa-agaatgaaagagacag
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3733224 61 -   3775709 -CAAATTATTGCCTTCATGTTGGGACAGAACAGGGCCAAATGgaaa-aggatgaaagagaaag
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3625462 60 +  47448759 -CAAACTATTGCCTT-ATGCTGGGATGAACAAGAGTAGGGGAGAAA-AGAATAAAAGAGACAG
i calJac3.chr18                   C 0 C 0
s tarSyr2.KE942496v1                 166110 63 +    410062 CAGAGAAATTCTCTTCTGAGAGGCATCCAGAGAGGCTACATGGGAACAATCTGTCAGAAGAGG
i tarSyr2.KE942496v1              n 0 C 0
e nasLar1.chr1                    110450285 577 - 215897965 I
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e saiBol1.JH378257                  2803961 1293 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=13098.000000
s hg38.chr1_KI270711v1_random          8178 11 +     42210 acacacacaca
s panTro5.chr1                    208001157 11 - 228573443 acagagagaca
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135160 11 - 229774977 acagagagaca
i panPan2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260900  7 +    297174 ----acagaca
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103751737 11 - 225584828 acacacacaca
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211825726 11 + 227556264 acagacagaca
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11403014 11 -  14060431 acagacacaca
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3733285 11 -   3775709 acagacagaga
i colAng1.NW_012114988v1          C 0 I 29
s tarSyr2.KE942496v1                 166173  4 +    410062 ACAG-------
i tarSyr2.KE942496v1              C 0 C 0
e nasLar1.chr1                    110450285 577 - 215897965 I
e calJac3.chr18                     3625522  0 +  47448759 C
e gorGor5.CYUI01015145v1            3799015 36 -   8455952 I
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e saiBol1.JH378257                  2803961 1293 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=6729.000000
s hg38.chr1_KI270711v1_random          8189 20 +     42210 cacacacacacacacacaca
s panTro5.chr1                    208001168 20 - 228573443 gagagacagaggcagagaga
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135171 20 - 229774977 gagagacagaggcagagaga
i panPan2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260907 20 +    297174 gagagacagacacagagaaa
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103751748 20 - 225584828 gagacacacacacacacaca
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211825737 11 + 227556264 cacacacacac---------
i macFas5.chr1                    C 0 I 31
s macNem1.NW_012017688v1           11403025 20 -  14060431 cacacacacacacacacaca
i macNem1.NW_012017688v1          C 0 C 0
s calJac3.chr18                     3625522  7 +  47448759 ---AGAAAGA----------
i calJac3.chr18                   C 0 C 0
e nasLar1.chr1                    110450285 577 - 215897965 I
e tarSyr2.KE942496v1                 166177  0 +    410062 C
e gorGor5.CYUI01015145v1            3799015 36 -   8455952 I
e colAng1.NW_012114988v1            3733296 29 -   3775709 I
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e saiBol1.JH378257                  2803961 1293 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=1482.000000
s hg38.chr1_KI270711v1_random          8209 2 +     42210 ca
s panTro5.chr1                    208001188 2 - 228573443 ga
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135191 2 - 229774977 ga
i panPan2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260927 2 +    297174 aa
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103751768 2 - 225584828 ca
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11403045 2 -  14060431 ga
i macNem1.NW_012017688v1          C 0 I 60
s calJac3.chr18                     3625529 2 +  47448759 GA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2802668 2 -   4070394 ca
i saiBol1.JH378257                T 1293 C 0
e nasLar1.chr1                    110450285 577 - 215897965 I
e tarSyr2.KE942496v1                 166177 0 +    410062 C
e gorGor5.CYUI01015145v1            3799015 36 -   8455952 I
e colAng1.NW_012114988v1            3733296 29 -   3775709 I
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211825748 31 + 227556264 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=6965.000000
s hg38.chr1_KI270711v1_random          8211 4 +     42210 GAGA
s panTro5.chr1                    208001190 4 - 228573443 gaga
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135193 4 - 229774977 gaga
i panPan2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260929 4 +    297174 gaga
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211825779 4 + 227556264 AAAA
i macFas5.chr1                    I 31 C 0
s macNem1.NW_012017688v1           11403107 4 -  14060431 aaaa
i macNem1.NW_012017688v1          I 60 C 0
s calJac3.chr18                     3625531 4 +  47448759 GAAA
i calJac3.chr18                   C 0 I 2
s saiBol1.JH378257                  2802670 4 -   4070394 gaaa
i saiBol1.JH378257                C 0 I 2
e nasLar1.chr1                    110450285 577 - 215897965 I
e tarSyr2.KE942496v1                 166177 0 +    410062 C
e gorGor5.CYUI01015145v1            3799015 36 -   8455952 I
e colAng1.NW_012114988v1            3733296 29 -   3775709 I
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e rheMac8.chr1                    103751770 0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=-8656.000000
s hg38.chr1_KI270711v1_random          8215 3 +     42210 ATG
s panTro5.chr1                    208001194 3 - 228573443 GCG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135197 3 - 229774977 gag
i panPan2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    260933 2 +    297174 ga-
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211825783 3 + 227556264 ATG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11403111 3 -  14060431 atg
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3733325 3 -   3775709 GCG
i colAng1.NW_012114988v1          I 29 C 0
s calJac3.chr18                     3625537 1 +  47448759 A--
i calJac3.chr18                   I 2 C 0
s saiBol1.JH378257                  2802676 1 -   4070394 A--
i saiBol1.JH378257                I 2 C 0
s tarSyr2.KE942496v1                 166177 1 +    410062 --G
i tarSyr2.KE942496v1              C 0 C 0
e nasLar1.chr1                    110450285 577 - 215897965 I
e gorGor5.CYUI01015145v1            3799015 36 -   8455952 I
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e cebCap1.NW_016108146v1             186460 76964 +    407294 I
e rheMac8.chr1                    103751770 0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=1263.000000
s hg38.chr1_KI270711v1_random          8218 1 +     42210 A
s panTro5.chr1                    208001197 1 - 228573443 A
i panTro5.chr1                    C 0 I 2
s panPan2.chr1                    208135200 1 - 229774977 a
i panPan2.chr1                    C 0 I 2
s macFas5.chr1                    211825786 1 + 227556264 A
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11403114 1 -  14060431 a
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3733328 1 -   3775709 C
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3625538 1 +  47448759 A
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2802677 1 -   4070394 A
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             263424 1 +    407294 A
i cebCap1.NW_016108146v1          I 76964 C 0
s tarSyr2.KE942496v1                 166178 1 +    410062 G
i tarSyr2.KE942496v1              C 0 C 0
e nasLar1.chr1                    110450285 577 - 215897965 I
e gorGor5.CYUI01015145v1            3799015 36 -   8455952 I
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e rheMac8.chr1                    103751770 0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I
e nomLeu3.chr24_GL397604_1_random    260935 0 +    297174 C

a score=424128.000000
s hg38.chr1_KI270711v1_random          8219 88 +     42210 GCTCAGTGAATTGTCCAGGTGACACACTGATGAGGGAGTA-ACAGGACACTCTGAGTTAGTGCCCTCAGGACACACAGCATACAGTGAT
s panTro5.chr1                    208001200 88 - 228573443 GCTCACTGAATTGTCCAGGTGACACACTGAGGAGGGAGTA-ACAGGACACTCTGAGTTAGTGCCCTCAGGACACACAGCATACAGTGAT
i panTro5.chr1                    I 2 C 0
s panPan2.chr1                    208135203 87 - 229774977 GCTCACTGAATTGTCCAGGTGACACACTGAGGAGGGAGT--ACGGGACACTCTGAGTTAGTGCCCTCAGGACACACAGCATACAGTGAT
i panPan2.chr1                    I 2 C 0
s gorGor5.CYUI01015145v1            3799051 87 -   8455952 GCTCACTGAATTGTCCAGGTGACACACTGATGAGGGAGT--AAAGGACACTCTGAGTTAGTGCCCTCAGGACACACAGCATACAGTGAT
i gorGor5.CYUI01015145v1          I 36 C 0
s nomLeu3.chr24_GL397604_1_random    260935 88 +    297174 gCTCAGTGAATTGTCCAGGTGACACACTGATGAGGGAGTA-ACAGGACACTCTGAGTTAGTGCCCTCAGAACACACAGCATACAGTGAT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211825787 88 + 227556264 GCTCAGTGAATTGTCCAGGTGACACACTGATGAGGGAGTA-ACAGGACACTCTGAGTTAGTGCACTCAGGACACACAGCATACAGCGAT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11403115 88 -  14060431 GCTCAGTGAATTGTCCAGGTGACACACTGATGAGGGAGTA-ACAGGACACTCTGAGTTAGTGCACTCAGGACACACAGCATACAGCGAT
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3733329 88 -   3775709 GCTTGGCGAATTGTCCAGGTGACACACTGACGAGGGAGTA-ACAGGACACTCTGAGTCAGTGCCCTCAGGACACACAGCATACAGTGAT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3625539 88 +  47448759 GCTCAGTGAACCGTCCAGGTGACACACTGATGAGGGAGTA-AAAGGACACTCTGAGTTAGTACCCTCAGGACACACAGCGTACACTGAT
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2802678 88 -   4070394 GCTCAGTGAACCGTCCAGGTGACACACTCATGAGGGAGTA-AAAGGACACTCCGAGTTAGTACCCTCAGGACACACAGCGAACACTGAT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             263425 88 +    407294 GCTCAGTGAACTGTCCAGGTGACACACTGATGAGGGAGTA-AAAGGACACTCTGAGTTAGTGCCCTCAGGACACACAGAGAACACAGAT
i cebCap1.NW_016108146v1          C 0 C 0
s tarSyr2.KE942496v1                 166179 89 +    410062 GCTCAGTCAACTCTACAGATTACAAGTGGAGGGGAAAGGAGAAAGGACATCCTGCATGGCAACCCTCATGACACACAGTAGGTGGTGAT
i tarSyr2.KE942496v1              C 0 I 919
e nasLar1.chr1                    110450285 577 - 215897965 I
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e rheMac8.chr1                    103751770  0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=66215.000000
s hg38.chr1_KI270711v1_random          8307 35 +     42210 CAGGAAAGGACTGTGCTCAATAATTTTCCATAAAA
s panTro5.chr1                    208001288 35 - 228573443 CATGAAAAGACTGTGCTCAATAATTTTCCATAAAA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135290 35 - 229774977 CATGAAAAGACTGTGCTCAATAATTTTCCATAAAA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3799138 35 -   8455952 CATGAAAAGACTGTGCTCAATAATTTTCCATAAAA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    261023 35 +    297174 CATGAAAAGACTGTGCTCAATAATTTTCCATAAAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211825875 35 + 227556264 CATGAAAAGACTGTGCTCAATAATTTTCCATAAAA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11403203 35 -  14060431 CATGAAAAGACTGTGCTCAATAATTTTCCATAAAA
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3733417 35 -   3775709 CATGAAAAGGCTGTGATCAATAATTTTCCATCAAT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3625627  7 +  47448759 CATAAAA----------------------------
i calJac3.chr18                   C 0 I 1
s saiBol1.JH378257                  2802766  7 -   4070394 CCTAAAA----------------------------
i saiBol1.JH378257                C 0 I 1
s cebCap1.NW_016108146v1             263513  7 +    407294 CATAAAA----------------------------
i cebCap1.NW_016108146v1          C 0 I 3
e nasLar1.chr1                    110450285 577 - 215897965 I
e tarSyr2.KE942496v1                 166268 919 +    410062 I
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e rheMac8.chr1                    103751770  0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=80157.000000
s hg38.chr1_KI270711v1_random          8342 45 +     42210 TGTGCTCAAGTTTCCATGCAGTCGCCATGAGAATACAGTTTTTGA
s panTro5.chr1                    208001323 45 - 228573443 TGTGCTCAAGTTTCCATGCAGTCACCATGAGGATACAGCTTTTGA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135325 45 - 229774977 TGTGCTCAAGTTTCCATGCAGTCACCATGAGGATACAGCTTTTGA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3799173 43 -   8455952 TGTGCTCAAGTTTCCATGCAGTCGCCATGA--ATACAGCTTTTGA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    261058 45 +    297174 TGTGCTCAAGATTCCATGCAGTCACCATAAGAATACAACTTTTGA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211825910 45 + 227556264 TGTGCTCAAGTTTCCATGCAGTCACCATGAGAATACAGCTTTTGA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11403238 45 -  14060431 TGTGCTCAAGTTTCCATGCAGTCACCATGAGAATACAGCTTTTGA
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3733452 45 -   3775709 TGTGCTCAAGTTTCCATGTGGTCACCATGAGAATAGAGCTTTTGA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3625635  2 +  47448759 -------------------------CA------------------
i calJac3.chr18                   I 1 C 0
s saiBol1.JH378257                  2802774  2 -   4070394 -------------------------CA------------------
i saiBol1.JH378257                I 1 C 0
e nasLar1.chr1                    110450285 577 - 215897965 I
e tarSyr2.KE942496v1                 166268 919 +    410062 I
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e cebCap1.NW_016108146v1             263520  3 +    407294 I
e rheMac8.chr1                    103751770  0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=399915.000000
s hg38.chr1_KI270711v1_random          8387 101 +     42210 AGTCTGGTCCACCTACAGTAGGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAATATCTACTGCAATGAAAACCAACAGCAATGTTAGTAGGAA
s panTro5.chr1                    208001368 101 - 228573443 AGTCTGGTCCACCTACAGTAGGTTAGTAAGTGATAAGGGGAGGAAGAAACGGAAACCTAAATATCTACTGCAATGAAAACCAACAGCAATGTCAGTAGGAA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135370 101 - 229774977 AGTATGGTCGACCTACAGTAGGTTAGTAAGTGATAAGGGGAGGAAGAAACGGAAACCTAAATATCTACTGCAATGAAAACCAATAGCAATGTGAGTAGGAA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3799216  99 -   8455952 AGTATGGTC-ACCTACAGTAGGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAATATCTACTGCAATGAAAACCAACAGCAATGT-AGTAGGAA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    261103 101 +    297174 AGTCTGGTCAACCTACAGTAGGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAATATCTACTGCAATGAAAACAAACAGCAGTGTTAGTAGGAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211825955 101 + 227556264 AGTATGGTCCACCTACAGTAGGTTCGTAAATGATAACGGGAGGAAGAAATGGATACCTAAATATCTACTGTCATGAAAACCAACAGCAATGTTAGTAGGAA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11403283 101 -  14060431 AGTATGGTCCACCTACAGTAGGTTCGTAAATGATAACGGGAGGAAGAAATGGATACCTAAATATCTACTGTCATGAAAACCAACAGCAATGTTAGTAGGAA
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3733497 101 -   3775709 AGTATGGTCCACCTATAGTAGGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAATATTTACTGTAATGAAAACCAAAAGCAATATTAGTAGGTG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3625637  86 +  47448759 AGTATGGTCAACCTACAGCA-GTTAGTAAATGGGAAG--------------GAAACCTAAGTATCTACTGCAATGAAAACCAACAGCGACGTTTGGAGGAA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2802776 100 -   4070394 AGTATGGTCAACCTACGGCA-CTTAGTAAATGATAAGGTGAGGAAGAAATAGAAACCTAAATATCTACCGCAACAAAAACCAACAGCAATGTTAGTAGGAA
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             263523 100 +    407294 AGTATGGTCAACCTACAGTA-GTTAGTACATGAAAATGGGAGGAAGAAATGGAAACCTAAATATCTACTGCAATGAAAACCAACAGCAATGTTAGTAGGAA
i cebCap1.NW_016108146v1          I 3 C 0
e nasLar1.chr1                    110450285 577 - 215897965 I
e tarSyr2.KE942496v1                 166268 919 +    410062 I
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e rheMac8.chr1                    103751770   0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=6006.000000
s hg38.chr1_KI270711v1_random          8488 1 +     42210 T
s panTro5.chr1                    208001469 1 - 228573443 T
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135471 1 - 229774977 T
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3799315 1 -   8455952 T
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    261204 1 +    297174 T
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211826056 1 + 227556264 T
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11403384 1 -  14060431 T
i macNem1.NW_012017688v1          C 0 C 0
s nasLar1.chr1                    110450862 1 - 215897965 T
i nasLar1.chr1                    I 577 I 3462
s colAng1.NW_012114988v1            3733598 1 -   3775709 T
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3625723 1 +  47448759 T
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2802876 1 -   4070394 T
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             263623 1 +    407294 T
i cebCap1.NW_016108146v1          C 0 C 0
e tarSyr2.KE942496v1                 166268 919 +    410062 I
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e rheMac8.chr1                    103751770 0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=21505.000000
s hg38.chr1_KI270711v1_random          8489 5 +     42210 AATTC
s panTro5.chr1                    208001470 5 - 228573443 AATTC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135472 5 - 229774977 AATTC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3799316 5 -   8455952 AATTC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    261205 5 +    297174 AATTC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211826057 5 + 227556264 AATTC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11403385 5 -  14060431 AATTC
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3733599 5 -   3775709 AATTC
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3625724 5 +  47448759 ACTTC
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2802877 5 -   4070394 AGTTC
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             263624 5 +    407294 AGTTC
i cebCap1.NW_016108146v1          C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e tarSyr2.KE942496v1                 166268 919 +    410062 I
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e rheMac8.chr1                    103751770 0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=1288251.000000
s hg38.chr1_KI270711v1_random          8494 377 +     42210 AGGCTCGGTTGAAAAGATGTAATCGATAATGTCAGCCCGCCCTGTTTTCCCTGAACCAGGAGTCTCCAGATGTCAACACAGAAGTAGCTGTTCACAATTGCTCAG--TTACCTGGGGCATGGTGGGCCTTGGTCTTCTTCCTCTT-CCTGGTCCTTTTTAATTCCTGCAATACATTCAGACAGGGACAGACAAAATAAGCCAATTCACCTACACCCGTAACAGTCCACTGTCTAATCCCCACACAGGGATCTCAGGCTCCTCAGCAAGAGAACAGGACAATGTGAGAGATATACTTCAGGAGGCCTGAAAGCTGGTCATGAT----ATTCTTTGGTTTGCATCTCAGAACCAAGGGTGAAATATCCCTATTCTGGTAGATCGTT
s panTro5.chr1                    208001475 383 - 228573443 AGGCTTGGTTGAAAACACGTAATCGATAATGTCGGCCTGCTCTGCTTTCCCTGAACCAGGAGTCACCAGGTGTCAACACAGAATTAGCTGTTGACAATTGCTCAAACTTACCTGGGGCATGGTGGGCCTTGGTCTTCTTCCTCTT-CTTGGTCCTTTTTAATTCCTGCAATAAATTCAGACAGGGACAGACAAGATAAGCCAATTCACCTACACCCATAACAGTCCACTGTCTAATCCCCACACAGGGACCTCAGGCTCCTCAGCATGAGAACAGGACAATGTGAGAGATATACTTCAGGAGGCCTCAAAGCCGGTCATGATAGAGATTCTTTGGTTTGCATCTCAGAACCAAGGGTGAAATGTCCCTATTCTGGTAGATCGTT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135477 383 - 229774977 AGGCTTGGTTGAAAACACGTAATCGATAATGTCGGCCTGCTCTGCTTTCCCTGAACCAGGAGTCACCAGGTGTCAACACAGAATTAGCTGTTGACAATTGCTCAAACTTACCTGGGGCATGGTGGGCCTTGGTCTTCTTCCTCTT-CTTGGTCCTTTTTAATTCCTGCAATAAATTCAGACAGGGACAGACAAGATAAGCCAATTCACCTACACCCATAACAGTCCACTGTCTAATCCCCACACAGGGACCTCAGGCTCCTCAGCATGAGAACAGGACAATGTGAGAGATATACTTCAGGAGGCCTCAAAGCCGGTCATGATAGAGATTCTTTGGTTTGCATCTCAGAACCAAGGGTGAAATGTCCCTATTCTGGTAGATCGTT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3799321 371 -   8455952 AGGCTTGGTTGAAAACATGTAATCGATAATGTCAGCCTGCTCTG-TTTCCCTGAACCAGGAGTCTCCAGGTGTCAACACAGAATTAGCTGT--ACAATTGCTCAAA-TTACCTGGGGCATGGTGGGCCTTGGTCTTCTTCCTCTT-CTTGGTCCTTTTTAATTCCTGCAATA-ATTCAGACAGGGACAGACAA-ATAAGCC-ATTCACCTACA-CCATAACAGTCCACTGTCTAATCCCCACACAGGGA-CTCAGGCTCCTCAGCATGAGAATAGGACAATGTGAGAGATATACTTCAGGAGGCCTGAAAGC-GGTCATGATAGAGATTCTTTGGTTTGCATCTCAGAACCAAGGGTGAAAT-TCCCTATTCTGGTAGA-CGTT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    261210 382 +    297174 AGGCTTGGTTGAAAAGATGTAATCGATATTGTCAGCCTGCTCTGTCTTCCCTGAACCAAGAATCTCCAGGTGTCAACATAGAAGTAGCTGTTCACAATTGTTCAAAGTTACCTGGGGCATGATGGGCCTTGGTCTTCTTCCTCTT-CTTGGTCCTTTTTAATTCCTACGATAAATTCAGACAGGGACAGACAAAATAAGCCAATTCACTTACACCCATAACAGTCCACTGTCTAATCCCCACACAGGGACTTCAGGCTCCTCAGCATCAGAACAGGACAATGGGAGAGATATACTTCAGGAGGCCTGAAAGCCGGTCATGATAGAGATTCTTTAG-TTGCATCTCAGAACCAAGAGTGAAATACGACTATTATGGTAGATCTTT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211826062 383 + 227556264 AGGCTTGGTTGAAAAGATATAATCCATATTGTCAGCCTGCTCTGTTTTCCCTGAACCAGGAGTCTCCAGGTGTCAACACAGAATTAGCTGTTCACAATTGCTCAAAGTTACCTGGGGCATGGTGGGCCTTCGTCTTCTTCCTCTT-CTTGGTCCTTTTTAATTCCTGCAATAAATTCAGACAAGGACAAACAAAATAAGCCAATTTACCTACACCCATAACAGTCCACTGTCTAATCCCCACACGGGGACCTCAGGCTCCTCAGCATGAGAACAGGACAATGTGAGAGACATACTTCAGGAGGCCTGAAAGCCGGTCATGATAGAGGTTCTTTGGTTTGCATCGCTGAACCAAGGGTGCAATATCCCTATTCTGGTAGATCATT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11403390 383 -  14060431 AGGCTTGGTTGAAAAGATGTAATCCATATTGTCAGCCTGCTCTGTTTTCCCTGAACCAGGAGTCTCCAGGTGTCAACACAGAATTAGCTGTTCACAATTGCTCAAAGTTACCTGGGGTATGGTGGGCCTTCGTCTTCTTCCTCTT-CTTGGTCCTTTTTAATTCCTGCAATAAATTCAGACAAGGACAAACAAAATAAGCCAATTTACCTACACCCATAACAGTCCACTGTCTAATCCCCACACGGGGACCTCAGGCTCCTCAGCATGAGAACAGGACAATGTGAGAGACATACTTCAGGAGGCCTGAAAGCCGGTCATGATAGAGGTTCTTTGGTTTGCATCGCTGAACCAAGGGTGCAATATCCCTATTCTGGTAGATCATT
i macNem1.NW_012017688v1          C 0 C 0
s calJac3.chr18                     3625729 378 +  47448759 AGGCTTCATTGAAAAGATAGCATCGATATTGTCAGCCCACTCTGTTTTCCGTGGACCTGGCGTCTCCAGGTGTCAACACAAAATTAGCTGTTCACAGTTGCTCAAAGTTACCTGGGGCACAGTGGGCCTTGGTCTTCTTCCTCTT-CTTGGTCCTTTTTAATCTCTGCAATAAATTCAGATAGG----GACAAAGTTAGCC-ATTGCCCTACACCCATAACAGTCCACTGTCTAATCCCTGCACAGGGACCTCAGACTCCTCAGCTTGAGAACAGGATAACGTGAGAGAGAGACTTCAGGAGGTCTCAAGGCCAATCATGATAGAGATTCCTTGGTTTGTGTCTCAGAACCAATGGTGAAACGTCCCTATTCTGGTAGACTATT
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2802882 378 -   4070394 AGGCTTCGCTGAAAACATGCTATGGATATTGGCAGCCCACTCTGTTTTCCCTGGATCTGGCATCTCCAGGTGTCAACACATAATTAGCTGTTCACAATTGCTCAGAGTTA-CTGGGGCATGGTGGGCCTTGGTTTTCCTCTTCTT-----GCTTATTTTAATCTCTGCAATAAATTCAGACAGGGACAGACAAAATAAGCCAATTCCCCTACACCCGCAACAGTCCACTGTCTGATCCCTGCACAGGGACCTCAGGCTCCTCAGCATGAGAACAGGACAATGTGAGAGACAGACTTCAGGAGGTCCCGAGGCCAATCATGATAGAGATTCCTTGGTTTGTGTCTCAGAACCAATGGTGAAATGTCCCTATTCTGGTAGACCATT
i saiBol1.JH378257                C 0 I 134
s cebCap1.NW_016108146v1             263629 383 +    407294 AGGCTTCGTTGAAAACACGGTATCGATATTGTCAGCCCACTCTGTTTTCCCTGGACCTGGCGTCTCCAGGTGTCAACACATAATTAGCTGTTCACAATTGCACAAAGTTACCTGGGGCATGGTGGGCCTTGGTCTTCTTCCTCTTTCTTGGTCATTTTTAATCTCTGCAATAAATTCAGACAGGGACAGACAAAATAAGCC-ATTCCCCTCCACCCATAACAGTCCACTGTCTAATCCCTGCACAGGGACCTCAGGCTCCTCAGCATGAGAACAGGATAATGTGAGAGATAGACTTCAGGAGGTCTCAAAGCCAATCATGCTAGAGATTCCTTGGTTTGTGTCTTAGAACCAATGGTGAAATGTCCCTATTCTGGCAGACCATT
i cebCap1.NW_016108146v1          C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e tarSyr2.KE942496v1                 166268 919 +    410062 I
e colAng1.NW_012114988v1            3733604   0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e rheMac8.chr1                    103751770   0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=15509.000000
s hg38.chr1_KI270711v1_random          8871 5 +     42210 ATCCC
s panTro5.chr1                    208001858 5 - 228573443 ATCCC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135860 5 - 229774977 ATCCC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3799692 5 -   8455952 ATCCC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    261592 5 +    297174 ATCCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211826445 5 + 227556264 ATCCC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11403773 5 -  14060431 ATCCC
i macNem1.NW_012017688v1          C 0 C 0
s calJac3.chr18                     3626107 5 +  47448759 ATCCC
i calJac3.chr18                   C 0 C 0
s cebCap1.NW_016108146v1             264012 5 +    407294 ATCCT
i cebCap1.NW_016108146v1          C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e tarSyr2.KE942496v1                 166268 919 +    410062 I
e colAng1.NW_012114988v1            3733604 0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e saiBol1.JH378257                  2803260 134 -   4070394 I
e rheMac8.chr1                    103751770 0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=69360.000000
s hg38.chr1_KI270711v1_random          8876 34 +     42210 AAAATCATTTATCCCAAGTTTGTGCAAACAGTTA
s panTro5.chr1                    208001863 34 - 228573443 AAAATCATTTATCCCAAGTTTGTGCAAACAGTTA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135865 34 - 229774977 AAAATCATTTATCCCAAGTTTGTGCAAACAGTTA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3799697 34 -   8455952 AAAATCATTTATCCCAAGTTTGTGCAAACAGTTA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    261597 34 +    297174 AAAATCATTTATCCCGAGTTTGTGGAAACAGTTA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211826450 32 + 227556264 AAAATCATTTTTCCCAAGTTTGTGC--ACAGTTA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11403778 32 -  14060431 AAAATCATTTTTCCCAAGTTTGTGC--ACAGTTA
i macNem1.NW_012017688v1          C 0 C 0
s cebCap1.NW_016108146v1             264017 27 +    407294 -------TTTATCCCAAGTTTGTACAAACAGTTA
i cebCap1.NW_016108146v1          C 0 T 648
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e tarSyr2.KE942496v1                 166268 919 +    410062 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e saiBol1.JH378257                  2803260 134 -   4070394 I
e rheMac8.chr1                    103751770  0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=183299.000000
s hg38.chr1_KI270711v1_random          8910 111 +     42210 TGCCTGATTGTTCCCATCAGTTCAAAGACAATGCCCCAGATGATTTCTAGGAGGAAAACTGCAGTATTCAGCCCTGTCTCATCAAATGCCCAGCTCGTTCATGGATGCAAG
s panTro5.chr1                    208001897 109 - 228573443 TGCCTTACTGCTCCCATCAATTCAAAGAAAATGCCCCAGATGATTTCTAGGAGGAAAACTGCAGTATTCAGCCCTGTCTCATCAAATGCCCAGCTCATTCATGGTTGCA--
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208135899 109 - 229774977 TGCCTTACTGCTCCCATCAATTCAAAGAAAATGCCCCAGATGATTTCTAGGAGGAAAACTGCAGTATTCAGCCCTGTCTCATCAAATGCCCAGCTCATTCATGGTTGCA--
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3799731 105 -   8455952 TGCCTTATTG-TCCCATCGATTCAAAGA-AATGCCCCAGATGATTTCTAGGAGGAAAACTGCAGTATTCAGCCCTGTCTCATCAAATGCCCAGCTC-TTCATGG-TGCA--
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    261631 109 +    297174 TGCCTTATTGTTCCCATCAATTCAAAGAAAATGCCCCAGATGATTTCTAGGAGGAAAACTGCAGTATTCAGCCCTGTCTCATCAAATGCCCATCTTGTTCATGGTTGCA--
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211826482 111 + 227556264 TGCCTTATTGTTCCCATAAATTCAAAGAAAATGTCCCAGATTATTTCTAGGAGGAAAACTGCAGTATTCAGCCCTGTCTCATCAAATGCCCAGCTCGTTCATGGATGCAAG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11403810 111 -  14060431 TGCCTTATTGTTCCCATAAATTCAAAGAAAATGTCCCAGATTATTTCTAGGAGGAAAACTGCAGTATTCAGCCCTGTCTCATCAAATGCCCAGCTCGTTCATGGATGCAAG
i macNem1.NW_012017688v1          C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112   0 +  47448759 C
e tarSyr2.KE942496v1                 166268 919 +    410062 I
e colAng1.NW_012114988v1            3733604   0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e saiBol1.JH378257                  2803260 134 -   4070394 I
e rheMac8.chr1                    103751770   0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=-1877.000000
s hg38.chr1_KI270711v1_random          9021 3 +     42210 AAT-
s gorGor5.CYUI01015145v1            3799836 1 -   8455952 --G-
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211826593 3 + 227556264 AAT-
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11403921 3 -  14060431 AAT-
i macNem1.NW_012017688v1          C 0 C 0
s tarSyr2.KE942496v1                 167187 3 +    410062 -GTC
i tarSyr2.KE942496v1              I 919 I 670
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112 0 +  47448759 C
e panPan2.chr1                    208136008 0 - 229774977 C
e panTro5.chr1                    208002006 0 - 228573443 C
e colAng1.NW_012114988v1            3733604 0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e saiBol1.JH378257                  2803260 134 -   4070394 I
e rheMac8.chr1                    103751770 0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I
e nomLeu3.chr24_GL397604_1_random    261740 0 +    297174 C

a score=93981.000000
s hg38.chr1_KI270711v1_random          9024 55 +     42210 TTTAGACACTGAAATTAGAATGAGGGAGGAAATCTACAAACCCTTGAGTCCAAAT
s panTro5.chr1                    208002006 52 - 228573443 ---AGACACTGAAATTTGAATGAAGGAGGAAATCTACAAACCCTTGAGTCCAAAT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208136008 52 - 229774977 ---AGACACTGAAATTTGAATGAAGGAGGAAATCTACAAACCCTTGAGTCCAAAT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3799837 55 -   8455952 ATTAGACACTGAAATTAGAATGAAGGAGGAAATCTACAAACCCTTGAGTCCAAAT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    261740 52 +    297174 ---AGACCCTGAAATTAAAATGACGAAGAAAATCTACAAACCCTTGAGTCCAAAT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211826596 55 + 227556264 TTTAGACACTGAAATTAGAATGAAGGAGGAAATCTACAAACCTTTGAGTCCAAAT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11403924 55 -  14060431 TTTAGACACTGAAATTAGAATGAAGGAGGAAATCTACAAACCTTTGAGTCCAAAT
i macNem1.NW_012017688v1          C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e saiBol1.JH378257                  2803260 134 -   4070394 I
e rheMac8.chr1                    103751770  0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=290631.000000
s hg38.chr1_KI270711v1_random          9079 137 +     42210 CATAGTTC--TGTGAATTTTTTACATCTGCCTGGG--TCCAATGTGCTGAGAGCGGGCTCAGGTTGCCACAGGCATGGCTGGAGACTAGGAATAGAGCCTTGCTCACTGACCCATTTCATGTCTAGGCTTCCAGCGGAGA-C
s panTro5.chr1                    208002058 137 - 228573443 CAGAGTTC--TGTGAATTTTTTACATCTGCCTGGG--TCCAATGTGCTGAGAGTGGGCTCAGGTTGCCACAGGCATGGCTGGAGACTAGGAATAGAGCCTTGCTCACTGACCCATTTCATGTCTGGGCTTCCAACTGAAA-C
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208136060 137 - 229774977 CAGAGTTC--TGTGAATTTTTTACATCTGCCTGGG--TCCAATGTGCTGAGAGTGGGCTCAGGTTGCCACAGGCATGGCTGGAGACTAGGAATAGAGCCATGCTCACTGACCCATTTCATGTCTGGGCTTCCAACTGAAA-C
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3799892 136 -   8455952 CATAGTTC--TGTGAATTTTTTACATCTGCCCTGG--TCCAATGTGCTGAGAGTGGGCTCAGGTTGCCACAGGCATGGCTGGAGACTAGGAATAGAGCCTTGCTCACTGACCCATTTCATGTCTGGGCTTCCAACTGA-A-C
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    261792 137 +    297174 CATAGTTT--TGTGAATTTTTCACATCTGCCTGGG--TCCAATGTGCTGAGAGTGGGCTCAGGTTGCCACAGGCATGGCTGGAGACTAGGAATAGAGCCATGCTCACTGACCCATTTCATGTCTGGGCTTCCAACTGAAA-C
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211826651 137 + 227556264 CACAGTTC--TGTGAATTTTTTACATCTGCCTGGG--TCCAATGTGCTGAGAATGGGCTCAGGTTGCCACAGGCATAGCTGGAGACTAGGAATAGAGCCATGCTCACTGGTCCATTTCATGTCTGGGCTTCCAACTGAAA-C
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11403979 137 -  14060431 CACAGTTC--TGTGAATTTTTTACATCTGCCTGGG--TCCAATGTGCTGAGAATGGGCTCAGGTTGCCACAGGCATAGCTGGAGACTAGGAATAGAGCCATGCTCACTGGTTCATTTCATGTCTGGGCTTCCAACTGAAA-C
i macNem1.NW_012017688v1          C 0 C 0
s saiBol1.JH378257                  2803394 142 -   4070394 CATAGCTTGGTGTGAGTGCGCAACACCTGCCTTGGGCTTCAATGTCCTGACAGTCGGTCCAGGGTGCGACGGGCATGGCCTGAGACTAGAGAGAAAGCAAAGCTCACTGACCCACCCCATGTCCATGCTTCAGACTGGAATC
i saiBol1.JH378257                I 134 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112   0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e colAng1.NW_012114988v1            3733604   0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e rheMac8.chr1                    103751770   0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=-964.000000
s hg38.chr1_KI270711v1_random          9216 4 +     42210 TACA
s panTro5.chr1                    208002195 4 - 228573443 TACA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208136197 4 - 229774977 TACA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3800028 4 -   8455952 TACA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    261929 4 +    297174 TACA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211826788 2 + 227556264 TA--
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11404116 2 -  14060431 TA--
i macNem1.NW_012017688v1          C 0 C 0
s saiBol1.JH378257                  2803536 2 -   4070394 CA--
i saiBol1.JH378257                C 0 C 0
s otoGar3.GL873592                  8639102 4 -   9938236 TAGA
i otoGar3.GL873592                N 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112 0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e colAng1.NW_012114988v1            3733604 0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e rheMac8.chr1                    103751770 0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=-2461.000000
s hg38.chr1_KI270711v1_random          9220 1 +     42210 -G
s panTro5.chr1                    208002199 1 - 228573443 -A
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208136201 1 - 229774977 -A
i panPan2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    261933 1 +    297174 -G
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211826790 1 + 227556264 -G
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11404118 1 -  14060431 -G
i macNem1.NW_012017688v1          C 0 C 0
s papAnu3.chr1                    201377864 1 - 220367699 -g
i papAnu3.chr1                    N 0 I 1701
s saiBol1.JH378257                  2803538 1 -   4070394 -G
i saiBol1.JH378257                C 0 C 0
s otoGar3.GL873592                  8639106 1 -   9938236 T-
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112 0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e gorGor5.CYUI01015145v1            3800032 0 -   8455952 C
e colAng1.NW_012114988v1            3733604 0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e rheMac8.chr1                    103751770 0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=197215.000000
s hg38.chr1_KI270711v1_random          9221 109 +     42210 TTTCATTACAACCT-ATATGCGCCCATAGGTCCTGCCTGCGGCAA----TGACATCTCTCGGGTCAGTAAGGGCCACTGGGAAC-----AGGAATATCACCCCTATCTGGAAGACCAGG
s panTro5.chr1                    208002200 109 - 228573443 TTTCATTACAACCT-CTATGCGCCCACGGGTCCTGCCTGCGGCAA----TGACATCTCTCGGGTCAATAAGGGCCACTTGGAAC-----AGGAATATCACCCATATCTGGAGGACCAGG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208136202 109 - 229774977 TTTCATTACAACCT-CTATGCGCCCACGGGTCCTGCCTGTGGCAA----TGACATCTCTCGGGTCAATAAGGGCCACTTGGAAC-----AGGAATATCACCCATATCTGGAGGACCAGG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3800032 108 -   8455952 TTTCATTACAACCTACTATGCGCCCATAGGTCCTGCCTGCGGCAA----TGACATCTCTC-GGTCAGTAAGGGCCACTTGGAAC-----AGGAATATCACCC-TATCTGGAAGACCAGG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    261934 109 +    297174 TTTCATTACAAGCT-ATATGCATCCATAGGCCCTGCCTATGGCAA----TGACATCTCTTGGGTCAGTAAGGGCCACTTGGAAG-----AGGAATATCATCCCTATCTGGAAGACCAGG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211826791 109 + 227556264 TTTCATTACAACCC-ATATGTGCCTATAGGTCCTGCCTGCGGCAA----TGACATCTCTCAGGTCAGTAAGGGCCACTTAGAAC-----AGGAATATCACCCCTATCTGGAAGACCAGG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11404119 109 -  14060431 TTTCATTACAACCC-ATATGTGCCTATAGGTCCTGCCTGCGGCAA----TGACATCTCTCAGGTCAGTAAGGGCCACTTAGAAC-----AGGAATATCACCCCTATCTGGAAGACCAGG
i macNem1.NW_012017688v1          C 0 C 0
s saiBol1.JH378257                  2803539 110 -   4070394 AGTGATTGAAATCT-ACACTGATTTACAGGTTCAGTCCACAGTGA----TGACAACTCTCAGCCCGGCCAGGGGAGC----AACGCCCAAAGACTATGGGGTCTATCTGGGACACAAAA
i saiBol1.JH378257                C 0 T 1181
s otoGar3.GL873592                  8639107 102 -   9938236 TCTGATGCCAATTG-ATGTGTGTCTCCAGGTCCCGCCTGCACCAATGACTGACAGCTCTCTGCCCAGCTGGGG---CTGGGAAG-----TGGAAGGAT-------TATGGGATAACGT-
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112   0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604   0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e rheMac8.chr1                    103751770   0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=132236.000000
s hg38.chr1_KI270711v1_random          9330 77 +     42210 TGGAGGCTTATCACCTTCATAGTAAGGTACTCACTGTCCACGTCAAGAGCCAAGCCAAGGTAC---TGTTCCTCCAATGA
s panTro5.chr1                    208002309 77 - 228573443 TGGAGTCTTATCACCTTCATAGTAAGGTACTCACTGTCCACGTCAAGAGCCAAGCCAAGGTGT---TGTTCCTGCAATGA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208136311 77 - 229774977 TGGAGTCTTATCACCTTCATAGTAAGGTACTCACTGTCCACGTCAAGAGCCAAGCCAAGGTGT---TGTTCCTGCAATGA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3800140 73 -   8455952 TGGATCCTTATCACCTTCATAGTAAGGTACTCACTGTCCACGTCAA-AGCCAAGCCAAGGTGT---TG--CCTCCAATA-
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    262043 77 +    297174 TGGAGGCTTATCACCTTCATAGTAAGGTACTCACTGTCCACATCAAGAGCCAAGCCAAGGTGC---TGTTCCTCCAATGA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211826900 77 + 227556264 TGGAGCCTTATCACCTTCATAGAAAGGTACTCACTGTCCACATCAAGAGCCAAGCAAAGGTGC---TGTTCCTCCAATGA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11404228 77 -  14060431 TGGAGCCTTATCACCTTCATAGAAAGGTACTCACTGTCCACATCAAGAGCCAAGCAAAGGTGC---TGTTCCTCCAATGA
i macNem1.NW_012017688v1          C 0 C 0
s otoGar3.GL873592                  8639209 65 -   9938236 TGGAACCTTATGA----CACAG-----------CTGCCTGCATTACAACCCAGACAGACATGCTTTTGTTTTTTCAAAAA
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e saiBol1.JH378257                  2803649 1181 -   4070394 T
e rheMac8.chr1                    103751770  0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=198212.000000
s hg38.chr1_KI270711v1_random          9407 141 +     42210 --GTAAACAGCACTTCT---------GTAGGGCTGGCCTAAGTCAGGCAGTTCAAGATAACCTGAAGGAGTCGAATAACATCTATCCAGGGAGTCCTGCAAGACTTCAGGCTCTTTCTCATCCAGCAGCTCCCTGCTGAGCCTGGAAAAGTA
s panTro5.chr1                    208002386 141 - 228573443 --GTAAAAGTCACTTCT---------GTAGGGCTGGCATAAGTCAGGCAGTTCCAGGTACGCAAAAGGAGTTGAATAAAATCTATCCAGTGAGTCCTGCAAGACTTCAGGCTCTTTCTCATCCAGCAGCTCCCTGCTGAGCCTGGAAAAGTA
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3800213 138 -   8455952 --GTAAA-AGCACTTCT---------GTAGGGCTGGCATAAGTCAGGCAGTTCCAGATAC-CTGAAGGAGTTGAATAA-ATCTATCCAGTGAGTCCTGCAAGACTTCAGGCTCTTTCTCATCCAGCAGCTCCCTGCTGAGCCTGGAAAAGTA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    262120 141 +    297174 --GTAAAAGGCACTTCT---------GTAGGGCTGGCATGAGTCAGGCAGTTCAAGATAACCGGAAGGAGTTGAATAACATATATCCAGTGAGTCCTGCAAGACTTCAGTCTCTTTCTTGTCCAGCAGCTCCCTGCTGAGCCTGGAAAAGTA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211826977 141 + 227556264 --GTAAAATGCACTTCT---------ATAGGGCTGACATGAGTCAGGCAGTTCAAGATAACCTGAAGGAGTCGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGCTCTTTCTCATCCAGCAGCTCCCTGCTGAGCCTGGAAAAGTA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11404305 141 -  14060431 --GTAAAATGCACTTCT---------ATAGGGCTGACATGAGTCAGGCAGTTCAAGATAACCTGAAGGAGTCGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGCTCTTTCTCATCCAGCAGTTCCCTGTTGAGCCTGGAAAAGTA
i macNem1.NW_012017688v1          C 0 C 0
s otoGar3.GL873592                  8639274 148 -   9938236 ACACAAAGCAAGCTCCTAATGGAGTGGGGGGGCGCGTAGGAGTCAGG----TCAGGAAGAATGGAAGGAATCAAATAACATCCATCCAGTGAGTCCTGAGAGACTTCAGGCTCCTCCGCCTCTGGGCATTCCCTGCTGACCCTGCAGGAATA
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112   0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e panPan2.chr1                    208136388   0 - 229774977 C
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604   0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e saiBol1.JH378257                  2803649 1181 -   4070394 T
e rheMac8.chr1                    103751770   0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I

a score=4440.000000
s hg38.chr1_KI270711v1_random          9548 7 +     42210 GGAAAAA
s panTro5.chr1                    208002527 6 - 228573443 GG-AAAA
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3800351 6 -   8455952 GG-AAAA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    262261 6 +    297174 GG-AGAA
i nomLeu3.chr24_GL397604_1_random C 0 I 1
s rheMac8.chr1                    121924240 6 + 225584828 GG-AAAA
i rheMac8.chr1                    n 0 I 1
s otoGar3.GL873592                  8639422 5 -   9938236 -G-AAGA
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112 0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e panPan2.chr1                    208136388 0 - 229774977 C
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604 0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118 0 + 227556264 C
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e saiBol1.JH378257                  2803649 1181 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I
e macNem1.NW_012017688v1           11404446 0 -  14060431 C

a score=10413.000000
s hg38.chr1_KI270711v1_random          9555 19 +     42210 GTAAAGAATAAGCCAGGGG
s panTro5.chr1                    208002533 19 - 228573443 GTAAAGAATAAGCCAGGGG
i panTro5.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    262268 19 +    297174 GTAAAGAATAAGGCAGAGG
i nomLeu3.chr24_GL397604_1_random I 1 C 0
s rheMac8.chr1                    121924247 19 + 225584828 CTAAAAGGTAAGCCAGGGA
i rheMac8.chr1                    I 1 C 0
s otoGar3.GL873592                  8639427 19 -   9938236 CCAAAGATGAATCCAGGGG
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118  0 + 227556264 C
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e saiBol1.JH378257                  2803649 1181 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C

a score=8844.000000
s hg38.chr1_KI270711v1_random          9574 9 +     42210 GAATCAGAA
s panTro5.chr1                    208002552 9 - 228573443 GAATCAGAA
i panTro5.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    262287 9 +    297174 AAATCAGAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121924266 9 + 225584828 AAATCAGAA
i rheMac8.chr1                    C 0 C 0
s rhiBie1.NW_016816432v1             110616 9 +    307276 GAATCAGAC
i rhiBie1.NW_016816432v1          N 0 I 21106
s otoGar3.GL873592                  8639446 9 -   9938236 GAACCAAAG
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112 0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e gorGor5.CYUI01015145v1            3800357 0 -   8455952 C
e panPan2.chr1                    208136388 0 - 229774977 C
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604 0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118 0 + 227556264 C
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e saiBol1.JH378257                  2803649 1181 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I
e macNem1.NW_012017688v1           11404446 0 -  14060431 C

a score=20330.000000
s hg38.chr1_KI270711v1_random          9583 43 +     42210 ACCACACAGCCCCAGCTACATTTCATGGCTAACATAAGGAACT
s panTro5.chr1                    208002561 43 - 228573443 ACCACACAGCCCCAGCTAGATTTCATGGGTAACATAAGGAACT
i panTro5.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    262296 43 +    297174 ACCACACAGCCCCAGCTAGATTTCATGGGTAACATAAGGAAGT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121924275 41 + 225584828 ACCACAGAGCCCCAACTAGATTTCATGGG--GCATAAGGAAGT
i rheMac8.chr1                    C 0 I 1
s otoGar3.GL873592                  8639455 31 -   9938236 ACC------------CTGAGTTTAATGTGGGGAATAAGGGAGT
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118  0 + 227556264 C
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e saiBol1.JH378257                  2803649 1181 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C

a score=4886.000000
s hg38.chr1_KI270711v1_random          9626 17 +     42210 GTTTAAACAGAAAAAGG
s nomLeu3.chr24_GL397604_1_random    262339 17 +    297174 GTTTTAAAAGAAAAAGA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121924317 17 + 225584828 GTTAAAAAAGAAAAAGG
i rheMac8.chr1                    I 1 C 0
s otoGar3.GL873592                  8639486 17 -   9938236 ATTCCAGAAAACAAAGG
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118  0 + 227556264 C
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e saiBol1.JH378257                  2803649 1181 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C

a score=21597.000000
s hg38.chr1_KI270711v1_random          9643 55 +     42210 ACAGATCCATTAATGAGGTAATGAATTATTGCCTTTATGTTGGGATAGACCAGGG
s nomLeu3.chr24_GL397604_1_random    262356 55 +    297174 ACAGATCCAGTAATGAGGTAACAAATTATTGCCTTTATGTTGGGATAGACCAGGG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121924334 55 + 225584828 ATAGATCCATTAATGAGGTAACAAATTATTGCCTTTATGTTGGAATAGGCCATGG
i rheMac8.chr1                    C 0 I 1
s saiBol1.JH378257                  2802468 54 -   4070394 ACGGATCCATGAATGACATAAAAAATTACTGCC-TTATGTTGGGATGGGCAAGAG
i saiBol1.JH378257                T 1181 C 0
s otoGar3.GL873592                  8639503 54 -   9938236 GGAACCCCCTTAAAGACCTCA-ATATTATCTTCTTCTTAACAGAATACAGCGAGG
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118  0 + 227556264 C
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C

a score=67.000000
s hg38.chr1_KI270711v1_random          9698 1 +     42210 C
s nomLeu3.chr24_GL397604_1_random    262411 1 +    297174 T
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s saiBol1.JH378257                  2802522 1 -   4070394 T
i saiBol1.JH378257                C 0 C 0
s otoGar3.GL873592                  8639557 1 -   9938236 C
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112 0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e gorGor5.CYUI01015145v1            3800357 0 -   8455952 C
e panPan2.chr1                    208136388 0 - 229774977 C
e panTro5.chr1                    208002604 0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604 0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118 0 + 227556264 C
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e rheMac8.chr1                    121924389 1 + 225584828 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I
e macNem1.NW_012017688v1           11404446 0 -  14060431 C

a score=10657.000000
s hg38.chr1_KI270711v1_random          9699 34 +     42210 -----CAGGTAGAAAAGAATgaaagagaaagacagggag---
s nomLeu3.chr24_GL397604_1_random    262412 34 +    297174 -----CAGGTATAAACGGATgaaagaggaagagagagag---
i nomLeu3.chr24_GL397604_1_random C 0 I 3
s rheMac8.chr1                    121924390 32 + 225584828 -----TGGGTAGGAAAGGATgaaagagaaagagagag-----
i rheMac8.chr1                    I 1 C 0
s saiBol1.JH378257                  2802523 34 -   4070394 -----AGGGCAAAAAAGAATAAAagagggagagagagac---
i saiBol1.JH378257                C 0 I 44
s otoGar3.GL873592                  8639558 42 -   9938236 TACCGGGGGTATAGGTAAGAGGTagagagatatagagaggag
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118  0 + 227556264 C
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C

a score=1326.000000
s hg38.chr1_KI270711v1_random          9733 3 +     42210 agg
s rheMac8.chr1                    121924422 3 + 225584828 aga
i rheMac8.chr1                    C 0 I 16
s saiBol1.JH378257                  2802601 3 -   4070394 aga
i saiBol1.JH378257                I 44 C 0
s otoGar3.GL873592                  8639600 3 -   9938236 aga
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112 0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e gorGor5.CYUI01015145v1            3800357 0 -   8455952 C
e panPan2.chr1                    208136388 0 - 229774977 C
e panTro5.chr1                    208002604 0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604 0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118 0 + 227556264 C
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I
e macNem1.NW_012017688v1           11404446 0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446 3 +    297174 I

a score=600.000000
s hg38.chr1_KI270711v1_random          9736 1 +     42210 g
s rheMac8.chr1                    103751770 1 - 225584828 g
i rheMac8.chr1                    C 0 C 0
s saiBol1.JH378257                  2802604 1 -   4070394 g
i saiBol1.JH378257                C 0 I 44
s otoGar3.GL873592                  8639603 1 -   9938236 g
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112 0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e gorGor5.CYUI01015145v1            3800357 0 -   8455952 C
e panPan2.chr1                    208136388 0 - 229774977 C
e panTro5.chr1                    208002604 0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604 0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118 0 + 227556264 C
e cebCap1.NW_016108146v1             264044 648 +    407294 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I
e macNem1.NW_012017688v1           11404446 0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446 3 +    297174 I

a score=6765.000000
s hg38.chr1_KI270711v1_random          9737 10 +     42210 agagggagag
s rheMac8.chr1                    103751771 10 - 225584828 agagagagag
i rheMac8.chr1                    C 0 C 0
s saiBol1.JH378257                  2802649 10 -   4070394 agagaaagag
i saiBol1.JH378257                I 44 C 0
s cebCap1.NW_016108146v1             263396 10 +    407294 agagagagag
i cebCap1.NW_016108146v1          T 648 C 0
s otoGar3.GL873592                  8639604 10 -   9938236 aaaatgagag
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118  0 + 227556264 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1011176 3806 -   1280666 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=8205.000000
s hg38.chr1_KI270711v1_random          9747 10 +     42210 agagacagag
s rheMac8.chr1                    103751781 10 - 225584828 agagagagag
i rheMac8.chr1                    C 0 I 10
s chlSab2.chr20_KE148050v1_random    346223 10 +   1280666 aaagagagag
i chlSab2.chr20_KE148050v1_random n 3806 I 1
s saiBol1.JH378257                  2802659  9 -   4070394 agagagaga-
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             263406  9 +    407294 agagagaga-
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8639614 10 -   9938236 agagagagag
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118  0 + 227556264 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=22377.000000
s hg38.chr1_KI270711v1_random          9757 28 +     42210 gagaaa----gtgagCTCAGCGAATTGGCCGG
s rheMac8.chr1                    121924441 28 + 225584828 gagaAA----ACGAGCTCAGTGAATTGACCAG
i rheMac8.chr1                    I 16 C 0
s chlSab2.chr20_KE148050v1_random    346234 28 +   1280666 gagaaa----gagagCTCAGTGAATTGTCCAG
i chlSab2.chr20_KE148050v1_random I 1 C 0
s saiBol1.JH378257                  2802668 28 -   4070394 cagaaa----gTAAGCTCAGTGAACCGTCCAG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             263415 28 +    407294 gagaaa----gCAAGCTCAGTGAACTGTCCAG
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8639624 29 -   9938236 ---aAACTGCATGTGCTTTGTGAATGGTCCAG
i otoGar3.GL873592                C 0 I 625
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118  0 + 227556264 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=55283.000000
s hg38.chr1_KI270711v1_random          9785 78 +     42210 GTGACACACTGATGAAGGGGTCAAAGGACACTCTGAGTTAGTGCCCTCGGGACACACAGAGAACAGTGATCATGAAAA
s rheMac8.chr1                    121924469 77 + 225584828 TTGACACA-TGATGAGGGAGTAACAGGACACTCTGAGTTAGTGCCTGCATGACACACAGCGAACAGTGATCATGAAAA
i rheMac8.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random    346262 78 +   1280666 GTGACACACTGATGAGGGAGTAACAGGACACTTTGAGTTAGTGCTCTAAGGACACACAGCATACAGTGATCATGAAAA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s saiBol1.JH378257                  2802696 78 -   4070394 GTGACACACTCATGAGGGAGTAAAAGGACACTCCGAGTTAGTACCCTCAGGACACACAGCGAACACTGATCCTAAAAA
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             263443 78 +    407294 GTGACACACTGATGAGGGAGTAAAAGGACACTCTGAGTTAGTGCCCTCAGGACACACAGAGAACACAGATCATAAAAA
i cebCap1.NW_016108146v1          C 0 I 554
e otoGar3.GL873592                  8639653 625 -   9938236 I
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118  0 + 227556264 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=7423.000000
s hg38.chr1_KI270711v1_random          9863 70 +     42210 GAGTGGGCTCAATAATTTTCCATAAACT-TGCTTAAGATTCCATGCAGTTGCC------ATACAGCCTTTGAGGTAT
s rheMac8.chr1                    121924546 77 + 225584828 GAGTGGGCTCAACAATTTTGCATAAAATGTGCTCAAGTTTCCATTCAGTCACCATGAGAATACAGCTTTTGAGGTTC
i rheMac8.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random    346340 77 +   1280666 GAATGCACTCAATAATTTTCCATAAAATGTGCTCAAGTTTCCATGCAGTCACCATGAGAATACAGCTTTTGAAGTAT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s saiBol1.JH378257                  2802774  7 -   4070394 ----------------------------------------------------------------------CAAGTAT
i saiBol1.JH378257                C 0 C 0
e otoGar3.GL873592                  8639653 625 -   9938236 I
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118  0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=7296.000000
s hg38.chr1_KI270711v1_random          9933 9 +     42210 GGTCAACCT
s rheMac8.chr1                    121924623 9 + 225584828 GGTCAACCT
i rheMac8.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random    346417 9 +   1280666 GGTCAACCT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s saiBol1.JH378257                  2802781 9 -   4070394 GGTCAACCT
i saiBol1.JH378257                C 0 C 0
s otoGar3.GL873592                  8640278 9 -   9938236 GGTCAACTG
i otoGar3.GL873592                I 625 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112 0 +  47448759 C
e tarSyr2.KE942496v1                 167190 670 +    410062 I
e gorGor5.CYUI01015145v1            3800357 0 -   8455952 C
e panPan2.chr1                    208136388 0 - 229774977 C
e panTro5.chr1                    208002604 0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604 0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118 0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e macNem1.NW_012017688v1           11404446 0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446 3 +    297174 I

a score=30183.000000
s hg38.chr1_KI270711v1_random          9942 54 +     42210 ACAGTAAGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCT---AAACATCTAC
s rheMac8.chr1                    121924632 54 + 225584828 ACTGTAAGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCA---AAAGGTCTAC
i rheMac8.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random    346426 54 +   1280666 ACTGTAAGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCT---AAATATCTAC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s saiBol1.JH378257                  2802790 53 -   4070394 ACGGCAC-TTAGTAAATGATAAGGTGAGGAAGAAATAGAAACCT---AAATATCTAC
i saiBol1.JH378257                C 0 C 0
s tarSyr2.KE938186v1                 161674 54 -    592473 ACTGTATGTAACTGAATAGAAGAGAGGAGAAGAAATGAAAACCTATAAAAGACC---
i tarSyr2.KE938186v1              n 670 C 0
s otoGar3.GL873592                  8640287 54 -   9938236 ATATTTTGTACAAAAGTTAAGAAGTTAATACGAAATGGAAACCA---ATACAAATAC
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201377865 1701 - 220367699 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118  0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=20189.000000
s hg38.chr1_KI270711v1_random          9996 25 +     42210 TGCAAGGAAAACCAACAGCAATGTC
s rheMac8.chr1                    121924686 25 + 225584828 TGCAATGAAAACCAACAGCAATGTC
i rheMac8.chr1                    C 0 C 0
s papAnu3.chr1                    201379566 25 - 220367699 TGCAATGAAAACCAACAGCAATGTT
i papAnu3.chr1                    I 1701 C 0
s chlSab2.chr20_KE148050v1_random    346480 25 +   1280666 TGCCATGAAAATCAACAGCAATGGT
i chlSab2.chr20_KE148050v1_random C 0 n 0
s saiBol1.JH378257                  2802843 25 -   4070394 CGCAACAAAAACCAACAGCAATGTT
i saiBol1.JH378257                C 0 C 0
s tarSyr2.KE938186v1                 161728 25 -    592473 CACAATGAAAACGGGATACAATGTA
i tarSyr2.KE938186v1              C 0 C 0
s otoGar3.GL873592                  8640341 15 -   9938236 CACAGTGAGAACATA----------
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118  0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=16457.000000
s hg38.chr1_KI270711v1_random         10021 35 +     42210 AGTAGGAGTAATTCAACCTTCGTTGAAAACATGAA
s rheMac8.chr1                    121924711 35 + 225584828 AGTAGGAGGAATTCAGGCTTGGTTGAAAAGATGAA
i rheMac8.chr1                    C 0 C 0
s papAnu3.chr1                    201379591 35 - 220367699 AGTAGGAATAATTCAGGCTTGGTTGAAAAGATGTA
i papAnu3.chr1                    C 0 C 0
s saiBol1.JH378257                  2802868 35 -   4070394 AGTAGGAATAGTTCAGGCTTCGCTGAAAACATGCT
i saiBol1.JH378257                C 0 I 358
s tarSyr2.KE938186v1                 161753 34 -    592473 AACATGGAAAATTTAGGA-GAGCTTAAAAAATAAA
i tarSyr2.KE938186v1              C 0 I 8
s otoGar3.GL873592                  8640356 33 -   9938236 AGAAG--ATAATTTCTGGTTGGCTAAATGGATGAA
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118  0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505  0 +   1280666 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=-1549.000000
s hg38.chr1_KI270711v1_random         10056 19 +     42210 ATTGA--------ACATACTC---------TTGTTT
s rheMac8.chr1                    121924746 18 + 225584828 ATTGA--------ACACACTC----------TGGTT
i rheMac8.chr1                    C 0 C 0
s papAnu3.chr1                    201379626 26 - 220367699 ATCAATAATGTCGGCCCGCTC----------TGTTT
i papAnu3.chr1                    C 0 C 0
s tarSyr2.KE938186v1                 161795 18 -    592473 ATCCA--------GTACTCTC----------TGGTT
i tarSyr2.KE938186v1              I 8 n 8
s otoGar3.GL873592                  8640389 27 -   9938236 ---------ATAGGTATATTCACCCCTTAATCATTT
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118  0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2802903 358 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505  0 +   1280666 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=19189.000000
s hg38.chr1_KI270711v1_random         10075 79 +     42210 TCCCTGGACCTGGCATCTCCAGGTGTCAACACAGAATTAAGCATCCATAATTGCTCAAAGTTACCTGGGG--CATGATGGG
s rheMac8.chr1                    121924764 79 + 225584828 TCCCTGGACCTGGCATCTCCAGGTGTCAACACAGAATTAAGCGTCCATAATTGCTCAAAGTTACCTGGGG--CATGGTAGG
i rheMac8.chr1                    C 0 C 0
s papAnu3.chr1                    201379652 79 - 220367699 TCCCCGAACCAGGAGTCTCCAGGTGTCAACACAGAATTAGCTGTTGTCAATTGCTCAGAGTTACCTGGGG--CATGGTGGG
i papAnu3.chr1                    C 0 C 0
s otoGar3.GL873592                  8640416 67 -   9938236 TCCCTGGATATGAGTTCT------------GCAGAATTAATAGCCCAGGATTTTTCCAAATTGCCGGGGGGCAATTGTT--
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112  0 +  47448759 C
e tarSyr2.KE938186v1                 161813  8 -    592473 I
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e manLeu1.NW_012105087v1             493704 6416 -   1325925 I
e cerAty1.NW_012001440v1            1810257 5748 -   2461138 I
e macFas5.chr1                    211827118  0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2802903 358 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505  0 +   1280666 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=201348.000000
s hg38.chr1_KI270711v1_random         10154 265 +     42210 TCTTGGTCTTCTTCCACTTCTTGGTACTTTTCA-ATTTCTGC-AATAAGTTCAGACATGGACAGACATATTAAGCTGGTTCTCCTACACACATAACAATCCACTGTCTAATCCTCACGCAGGGACTTCAGGCTCCTCAGCA-TGAGAATAGGACACTGTGAGAGATCTTCTTCAGGAGGCCTGAAGGCTGATCATGATAGAGATTCCTGGGTTTTTGTCCCAGAAACTGTGGGTAAAAT-TCCCTATTCTGGTAGATCGTTATCCCAAG
s rheMac8.chr1                    121924843 265 + 225584828 TTTTGGTCTTCTTCCTTTTCTTGGTACTTTTCA-ATTTCTGC-AATAAGTTCAGACACGGACAGACACATTAAGCCAATTCCCCTACACATGTAACAATCCACTGTCT-ATCCTTACACAGGGACCTCAGTCTTCTCACCA-TGAGAATAAGGCACTGTGAGAGCTATACTTCAGGAGGACTGAAGGCTGGTCATAATGGAGATTCCTTGGTTTTTGTCCCAGAAACTACAGGTAAAATGTCCCTATTCTGGTAGATTGCTATCCCAAT
i rheMac8.chr1                    C 0 C 0
s cerAty1.NW_012001440v1             747296 263 +   2461138 TTTTGGTCTTCTTCCTTTTCTTGGTACTTTTCA-ATTTCTGC-AATAAGTTCAGACACGGACAGACACATTAAGCCAATTCCCCTACACATGTAACAATCCACTGTCT-ATCCTTACACAGGGACCTCAGTCTTCTCACCA-TGAGAATAGGGCAC--TGAGAGCTATACTTCAGGAGGACTGAAGGCTGGTTATAATGGAGATTCCTTGGTTTTTGTCCCAGAAACTACAGGTAAAATGTCCCAATTCTGGTAGATTGCTATCCCAAT
i cerAty1.NW_012001440v1          n 5748 C 0
s papAnu3.chr1                    201379731 262 - 220367699 CCTTGGTCTTCTTCCTCTTCT---TCCTTTGTA-ATTCCTGC-AATAAAATCAGACAGGGACAGGCAAAATAAGCCAATTCACCTACACCCAGAACAGTCCACTGTCTAATCCCCACACAGGGACCACAGGCTCCTCAGCA-TGAGAACAGGATAATGTGAGAGATACACTGCAGGAGGCCTCAAAGCCGGTCATGATAGAGAGTCTGTGATTTACATCTCAG-AACCAAGGGTCAAATGTCCCTATGCTGGTAGACAGTTATCCCAAA
i papAnu3.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             921615 265 +   1325925 TTTTGGTCTTCTTCCTTTTCTTGGTACTTTTCA-ATTTCTGC-AATAAGTTCAGACATGGACAGACACATTAAGCCAATTCCCCTACACATGTAACAATCCACTGTCT-ATCCTTACACAGGGACCTCAGTCTTCTCACCA-TGAGAATAAGGCACTGTGAGAGCTATACTTCAGGAGGACTGAAGGCTGGTCATAATGGAGATTCCTTGGTTTTTGTCCCAGAAACTACAGGTAAAATGTCCCTATTCTGGTAGATTGCTATCCCAAT
i manLeu1.NW_012105087v1          n 6416 C 0
s otoGar3.GL873592                  8640483 259 -   9938236 TCTTGTCTTTTCATCACTTCATAATCATTTTGATTTTTCTGTAAATAAATTAAGGCCTG------TGCCTTAATTTA--CACTTTACACATGCCCCAATATTGTGTCC-AACCGATCACAGGCACATAAATACACTCAGTGTTAAGAATAGGATATTGTGAAAGAAATTTTCCAGGAAGCTTCAGTCTGGGCCTTGTCAGAGTTCACTGGGTTTGCTTTCCTA-AACAATTAGGCAAATTTCCCTAATATGACAGGTCATCATCCCAAT
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112   0 +  47448759 C
e tarSyr2.KE938186v1                 161813   8 -    592473 I
e gorGor5.CYUI01015145v1            3800357   0 -   8455952 C
e panPan2.chr1                    208136388   0 - 229774977 C
e panTro5.chr1                    208002604   0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604   0 -   3775709 C
e macFas5.chr1                    211827118   0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2802903 358 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505   0 +   1280666 I
e macNem1.NW_012017688v1           11404446   0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446   3 +    297174 I

a score=4884.000000
s hg38.chr1_KI270711v1_random         10419 4 +     42210 ATCA
s rheMac8.chr1                    121925108 4 + 225584828 ATCA
i rheMac8.chr1                    C 0 C 0
s cerAty1.NW_012001440v1             747559 4 +   2461138 ATCA
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201379993 4 - 220367699 ATCA
i papAnu3.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             921880 4 +   1325925 ATCA
i manLeu1.NW_012105087v1          C 0 C 0
s saiBol1.JH378257                  2803261 4 -   4070394 ACCT
i saiBol1.JH378257                I 358 C 0
s otoGar3.GL873592                  8640742 4 -   9938236 ATCC
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626112 0 +  47448759 C
e tarSyr2.KE938186v1                 161813 8 -    592473 I
e gorGor5.CYUI01015145v1            3800357 0 -   8455952 C
e panPan2.chr1                    208136388 0 - 229774977 C
e panTro5.chr1                    208002604 0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604 0 -   3775709 C
e macFas5.chr1                    211827118 0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505 0 +   1280666 I
e macNem1.NW_012017688v1           11404446 0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446 3 +    297174 I

a score=47295.000000
s hg38.chr1_KI270711v1_random         10423 24 +     42210 TTTGTCCCAAGTTTGTGCAAATGG
s rheMac8.chr1                    121925112 24 + 225584828 TTTGTCCCAAGTTTGTACAAATGG
i rheMac8.chr1                    C 0 C 0
s cerAty1.NW_012001440v1             747563 24 +   2461138 TTTGTCCCAAGTTTGTACAAATGG
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201379997 24 - 220367699 TTTATCCCGAATTTGTGCAAATAG
i papAnu3.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             921884 24 +   1325925 TTTGTCCCAAGTTTGTACAAATGG
i manLeu1.NW_012105087v1          C 0 C 0
s calJac3.chr18                     3626112 24 +  47448759 TTTATCCCAAGTTTGTACAAAAAG
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2803265 24 -   4070394 TTTATCCCAAGTTTGTATAAACAG
i saiBol1.JH378257                C 0 T 268
s otoGar3.GL873592                  8640746 24 -   9938236 TCTGTTCGGAGTCTGTGCAAACAG
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e tarSyr2.KE938186v1                 161813  8 -    592473 I
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e macFas5.chr1                    211827118  0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505  0 +   1280666 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=3219.000000
s hg38.chr1_KI270711v1_random         10447 3 +     42210 TTA
s rheMac8.chr1                    121925136 3 + 225584828 TTA
i rheMac8.chr1                    C 0 C 0
s cerAty1.NW_012001440v1             747587 3 +   2461138 TTA
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201380021 3 - 220367699 TTA
i papAnu3.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             921908 3 +   1325925 TGA
i manLeu1.NW_012105087v1          C 0 C 0
s calJac3.chr18                     3626136 3 +  47448759 TTA
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8640770 3 -   9938236 ATA
i otoGar3.GL873592                C 0 T 1671
e nasLar1.chr1                    110450863 3462 - 215897965 I
e tarSyr2.KE938186v1                 161813 8 -    592473 I
e gorGor5.CYUI01015145v1            3800357 0 -   8455952 C
e panPan2.chr1                    208136388 0 - 229774977 C
e panTro5.chr1                    208002604 0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604 0 -   3775709 C
e macFas5.chr1                    211827118 0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505 0 +   1280666 I
e macNem1.NW_012017688v1           11404446 0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446 3 +    297174 I

a score=13103.000000
s hg38.chr1_KI270711v1_random         10450 18 +     42210 TGCCATATTTTTCCAATC
s rheMac8.chr1                    121925139 18 + 225584828 CGCAGTATTTTTCCAATC
i rheMac8.chr1                    C 0 C 0
s cerAty1.NW_012001440v1             747590 18 +   2461138 CGCAGTATTTTTCCAATC
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201380024 18 - 220367699 TGCCTTATTGTTCCCATC
i papAnu3.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             921911 18 +   1325925 CGCAGTATTTTCCCAATC
i manLeu1.NW_012105087v1          C 0 C 0
s calJac3.chr18                     3626139 18 +  47448759 TGCCAAGTTTGTACAAAC
i calJac3.chr18                   C 0 I 3
e otoGar3.GL873592                  8640773 1671 -   9938236 T
e nasLar1.chr1                    110450863 3462 - 215897965 I
e tarSyr2.KE938186v1                 161813  8 -    592473 I
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e macFas5.chr1                    211827118  0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505  0 +   1280666 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=101173.000000
s hg38.chr1_KI270711v1_random         10468 159 +     42210 GATTTAAAGCAAATGCCCCCAAATGGTTGCTGGGAGAAAAACTGCAATATTCAGCCCTGTCTCATCAAATACTCAGATTCTTCATGGTAGCGAGGATTTTAGACGCTGAAATTAGAGTGAAGGATGAAATCTACAAGATCTACAAAATTGAGACAAAAT
s rheMac8.chr1                    121925157 144 + 225584828 AATTTAAAACAAATGCCCCCAAATGATTTCTAGGAGAAAAA---------------CTGTTTCATCAAAAACTCAGCTTTTTCATGATTGAAAAGATTTTAAACACTGAAATTAGAGTAAAGGAGGAAATCTACAAAATCTACAAAATTGAGTCAAAAT
i rheMac8.chr1                    C 0 C 0
s cerAty1.NW_012001440v1             747608 159 +   2461138 AATTTAAAACAAATGCCCCCAAATGATTTCTAGGAGAAAAACTGCAATATTCAGCCCTGTTTCATCAAAAACTCAGCTTTTTCATGATTGAAAAGATTTTAAACACTGAAATTAGAGTAAAGGAGGAAATCTACAAAATCTACAAAATTGAGTCAAAAT
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201380042 142 - 220367699 AATTCAAAGAAAATG-CCCCAGATGATTTCTAGGAGGAAAACTGCTGTATTCAGCCCTGTCTCATCAAATTCCCAACTTGTTCATGGTCGCA--------AGACACTGAAAGTAGAATAAAGGAGGAAATCTACA--------AATGTTGAGTCTGAAT
i papAnu3.chr1                    C 0 I 132
s manLeu1.NW_012105087v1             921929 159 +   1325925 AATTTAAAACAAATGCCCCCAAATGATTTCTAGGAGAAAAACTGCAATATTCAGCCCTGTTTTATAAAAAACTCAGCTTTTTCATGATTGAAAAGATTTTAAACACTGAAATTAGAGTAAAGGAGGAAATCTACAAAATCTACAAAATTGAGTCAAAAT
i manLeu1.NW_012105087v1          C 0 C 0
e otoGar3.GL873592                  8640773 1671 -   9938236 T
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626157   3 +  47448759 I
e tarSyr2.KE938186v1                 161813   8 -    592473 I
e gorGor5.CYUI01015145v1            3800357   0 -   8455952 C
e panPan2.chr1                    208136388   0 - 229774977 C
e panTro5.chr1                    208002604   0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604   0 -   3775709 C
e macFas5.chr1                    211827118   0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505   0 +   1280666 I
e macNem1.NW_012017688v1           11404446   0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446   3 +    297174 I

a score=67380.000000
s hg38.chr1_KI270711v1_random         10627 132 +     42210 CAGAGTTGTGTGAATTTGTCACATCTGCCCAGATCCAACATCTTGAGAGTAGGATTAGGGTGCCACAGGCATGGCCTGAGACTAGGAAGAGAGCCCTGCTCACTGACCCATCCCTTGCCTGGGCTTCCAAGT
s rheMac8.chr1                    121925301 132 + 225584828 CATAGTTGTGTGAATTTGTCACATCTGCCTGGGTCCAGTGTCTTGAGAGTAGGATCAGAGTGCCACAGGCATGGCCTGCGACTACGAAGACAGCCATGCTCACTGACCCATCCCATATTTGGGCTTCCAGGT
i rheMac8.chr1                    C 0 C 0
s cerAty1.NW_012001440v1             747767 132 +   2461138 CATAGTTGTGTGAATTTGTCACATCTGCCTGGGTCCAGTGTCTTGAGAGTAGGATCAGAGTGCCACAGGCATGGCCTGCGACTACGAAGACAGCCATGCTCACTGACCCATCCCATATTTGGGCTTCCAGGT
i cerAty1.NW_012001440v1          C 0 C 0
s manLeu1.NW_012105087v1             922088 132 +   1325925 CATAGTTGTGTGAATTTGTCACATCTGCCTGGGTCCAGTGTCTTGAGAGTAGGATCAGAGTGCCACAGGCATGGCCTGCGACTACGAAGACAGCCATGCTCACTGACCCATCCCATATTTGGGCTTCCAGGT
i manLeu1.NW_012105087v1          C 0 C 0
e otoGar3.GL873592                  8640773 1671 -   9938236 T
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626157   3 +  47448759 I
e tarSyr2.KE938186v1                 161813   8 -    592473 I
e gorGor5.CYUI01015145v1            3800357   0 -   8455952 C
e panPan2.chr1                    208136388   0 - 229774977 C
e panTro5.chr1                    208002604   0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201380184 132 - 220367699 I
e colAng1.NW_012114988v1            3733604   0 -   3775709 C
e macFas5.chr1                    211827118   0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505   0 +   1280666 I
e macNem1.NW_012017688v1           11404446   0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446   3 +    297174 I

a score=1000.000000
s hg38.chr1_KI270711v1_random         10759 1 +     42210 G
s rheMac8.chr1                    121925433 1 + 225584828 G
i rheMac8.chr1                    C 0 C 0
s cerAty1.NW_012001440v1             747899 1 +   2461138 G
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201380316 1 - 220367699 G
i papAnu3.chr1                    I 132 I 18
s manLeu1.NW_012105087v1             922220 1 +   1325925 G
i manLeu1.NW_012105087v1          C 0 C 0
e otoGar3.GL873592                  8640773 1671 -   9938236 T
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626157 3 +  47448759 I
e tarSyr2.KE938186v1                 161813 8 -    592473 I
e gorGor5.CYUI01015145v1            3800357 0 -   8455952 C
e panPan2.chr1                    208136388 0 - 229774977 C
e panTro5.chr1                    208002604 0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604 0 -   3775709 C
e macFas5.chr1                    211827118 0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505 0 +   1280666 I
e macNem1.NW_012017688v1           11404446 0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446 3 +    297174 I

a score=2292.000000
s hg38.chr1_KI270711v1_random         10760 4 +     42210 GAAC
s rheMac8.chr1                    121925434 4 + 225584828 GAAC
i rheMac8.chr1                    C 0 C 0
s cerAty1.NW_012001440v1             747900 4 +   2461138 GAAC
i cerAty1.NW_012001440v1          C 0 C 0
s manLeu1.NW_012105087v1             922221 4 +   1325925 GAAC
i manLeu1.NW_012105087v1          C 0 C 0
e otoGar3.GL873592                  8640773 1671 -   9938236 T
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626157 3 +  47448759 I
e tarSyr2.KE938186v1                 161813 8 -    592473 I
e gorGor5.CYUI01015145v1            3800357 0 -   8455952 C
e panPan2.chr1                    208136388 0 - 229774977 C
e panTro5.chr1                    208002604 0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201380317 18 - 220367699 I
e colAng1.NW_012114988v1            3733604 0 -   3775709 C
e macFas5.chr1                    211827118 0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505 0 +   1280666 I
e macNem1.NW_012017688v1           11404446 0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446 3 +    297174 I

a score=7406.000000
s hg38.chr1_KI270711v1_random         10764 13 +     42210 TAGAGTTTCATTC-
s rheMac8.chr1                    121925438 13 + 225584828 TAGAGTTTCATTC-
i rheMac8.chr1                    C 0 I 1
s cerAty1.NW_012001440v1             747904 13 +   2461138 TAGAGTTTCATTC-
i cerAty1.NW_012001440v1          C 0 I 1
s manLeu1.NW_012105087v1             922225 13 +   1325925 TAGAGTTTCATTC-
i manLeu1.NW_012105087v1          C 0 I 1
s otoGar3.GL873592                  8639102 14 -   9938236 TAGATTCTGATGCC
i otoGar3.GL873592                T 1671 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626157  3 +  47448759 I
e tarSyr2.KE938186v1                 161813  8 -    592473 I
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201380317 18 - 220367699 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e macFas5.chr1                    211827118  0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505  0 +   1280666 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=74622.000000
s hg38.chr1_KI270711v1_random         10777 81 +     42210 AACCTACATGTGCCTATAGGTCCTCCCTGTGGCAA----TGACATCTCTCAGCTCAGTAAGGGCCATTTGCAGTAGGAATATGAC
s rheMac8.chr1                    121925452 81 + 225584828 AACCTACATGTGCCTATAGGTCCTCCCTGTGGCAA----TGACAACTCTCAGCTCAGTAAGGGCCACTTGCAGCAGGAATATGAC
i rheMac8.chr1                    I 1 C 0
s cerAty1.NW_012001440v1             747918 81 +   2461138 AACCTACATGTGCCTATAGGTCCTCCCTGTGGCAA----TGACATCTCTCAGCTCAGTAAGGGCCACTTGCAGCAGGAATATGAC
i cerAty1.NW_012001440v1          I 1 C 0
s papAnu3.chr1                    201380335 81 - 220367699 AACCTATATGTGTCCATAGGTCCAGCCAGCAGCAA----TGACATCTCTCGGGTCAGGAAGGGCCACTTGGAACAGGAATATCAC
i papAnu3.chr1                    I 18 C 0
s manLeu1.NW_012105087v1             922239 81 +   1325925 AACCTACATGTGCCTATAGGTCCTCCCTGTGGCAA----TGACATCTCTCAGCTCAGTAAGGGCCACTTGCAGCAGGAATATGGC
i manLeu1.NW_012105087v1          I 1 C 0
s otoGar3.GL873592                  8639116 83 -   9938236 AATTGATGTGTGTCTCCAGGTCCCGCCTGCACCAATGACTGACAGCTCTCTGCCCAGCTGGGGCTG--GGAAGTGGAAGGATTAT
i otoGar3.GL873592                C 0 I 1079
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626157  3 +  47448759 I
e tarSyr2.KE938186v1                 161813  8 -    592473 I
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e macFas5.chr1                    211827118  0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505  0 +   1280666 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=36936.000000
s hg38.chr1_KI270711v1_random         10858 55 +     42210 CC-TAACCAGAAGACTCAGTGGATCCTTATCACCTTCATA----GAAAGGTACTCACCAT
s rheMac8.chr1                    121925533 56 + 225584828 CCATATCCAGAAGACTCGGTGGATCCTTATCACCTTCATT----GTAGGGTCCTCACTGT
i rheMac8.chr1                    C 0 C 0
s cerAty1.NW_012001440v1             747999 56 +   2461138 CCGTATCCAGAAGACTCGGTGGATCCTTATCACCTTCATT----GTAGGGTCCTCACTGT
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201380416 60 - 220367699 CCCTATCGGGAAGACCAGGTGGAGCCTTATCACCTTCCTTCATAGTAAGGAACTCACTGT
i papAnu3.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             922320 56 +   1325925 CCATATCCAGAAGACTCGGTGGATCCTTATCACCTTCATT----GTAGGGTCCTCACTGT
i manLeu1.NW_012105087v1          C 0 C 0
e otoGar3.GL873592                  8639199 1079 -   9938236 I
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626157  3 +  47448759 I
e tarSyr2.KE938186v1                 161813  8 -    592473 I
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e macFas5.chr1                    211827118  0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505  0 +   1280666 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=-1300.000000
s hg38.chr1_KI270711v1_random         10913 1 +     42210 -C
s rheMac8.chr1                    121925589 1 + 225584828 -C
i rheMac8.chr1                    C 0 C 0
s cerAty1.NW_012001440v1             748055 1 +   2461138 -C
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201380476 1 - 220367699 -C
i papAnu3.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             922376 1 +   1325925 -C
i manLeu1.NW_012105087v1          C 0 C 0
s tarSyr2.KE942496v1                 167860 1 +    410062 A-
i tarSyr2.KE942496v1              I 670 n 8
e otoGar3.GL873592                  8639199 1079 -   9938236 I
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626157 3 +  47448759 I
e gorGor5.CYUI01015145v1            3800357 0 -   8455952 C
e panPan2.chr1                    208136388 0 - 229774977 C
e panTro5.chr1                    208002604 0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604 0 -   3775709 C
e macFas5.chr1                    211827118 0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505 0 +   1280666 I
e macNem1.NW_012017688v1           11404446 0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446 3 +    297174 I

a score=25969.000000
s hg38.chr1_KI270711v1_random         10914 39 +     42210 CATGTCAAGAGCCCAGCCAACACGCTGTTGCTCCAATAT
s rheMac8.chr1                    121925590 39 + 225584828 CACCTCAAAAGCCAAGCCAACAAGCTGTTCCTCCAATGA
i rheMac8.chr1                    C 0 C 0
s cerAty1.NW_012001440v1             748056 39 +   2461138 CACCTCAAAAGCCAAGTCAACAAGCTGTTCCTCCAATGA
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201380477 39 - 220367699 CATGTCAAGAGCCAAGCCAAAGTGCTCTTCTTCCAACGA
i papAnu3.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             922377 39 +   1325925 CACCTCAAAAGCCAAGCCAACACGCTGTTCCTCCAATGA
i manLeu1.NW_012105087v1          C 0 C 0
e otoGar3.GL873592                  8639199 1079 -   9938236 I
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626157  3 +  47448759 I
e tarSyr2.KE942496v1                 167861  8 +    410062 I
e gorGor5.CYUI01015145v1            3800357  0 -   8455952 C
e panPan2.chr1                    208136388  0 - 229774977 C
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e macFas5.chr1                    211827118  0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505  0 +   1280666 I
e macNem1.NW_012017688v1           11404446  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=161699.000000
s hg38.chr1_KI270711v1_random         10953 141 +     42210 GTAAAAGGCACTTCTGTAGGGCTGGCATGAGTCAGTCAGTTCAAGATAACCTGAAGGAGTTGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGCCCTTTCTCATCCAGCAGCTCCCTGCTGAGCCTGGAACAGTG
s panPan2.chr1                    208136388 141 - 229774977 GGAAAAGTCACTTCTGTAGGGCTGGCATAAGTCAGGCAGTTCCAGGTACGCAAAAGGAGTCGAATAACATCTATCCAGTGAGTCCTGCCAGACTTCAGGCTCTTTCTCAAACAGCAGCTCCCTGCTGAGCCTGGAACAGTG
i panPan2.chr1                    C 0 C 0
s rheMac8.chr1                    121925629 141 + 225584828 GTAAAAGGCACTTCTGTAGGGCTGGTAGGAGTTCAGCAGTTCAAGATAACTGGAAGGAGTCGAATAACATCTATCCAGTGAGTACTGCAAGACTTCAGGCTCTTCCCCTTCCAGCAGCTCCCTGCTGAGCCTGGAGAAGTA
i rheMac8.chr1                    C 0 I 5418
s cerAty1.NW_012001440v1             748095 141 +   2461138 GTAAAAGGCACTTCTGTAGGGCTGGTAGGAGTTCAGCAGTTCAAGATAACTGGAAGGAGTCGAATAACATCTATCCAGTGAGTACTGCAAGACTTCAGGCTCTTCCCCTTCCAGCAGCTCCCTGCTGAGCCTGGAGAAGTA
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201380516 141 - 220367699 GTAGAAGGCATTTCTGTAGGGCTGGCATAAGTCAGGCAGTTCAAGATACCCGCAAGGGGTTGAATAAAATCTATCCAGTGAGTCCTGCAAGACTTCAGCCTCTTTCTCATCCAGCAGTTCCCTGTTGAGCCTGGAAAAGTA
i papAnu3.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             922416 141 +   1325925 GTAAAAGGCACTTCTGTAGGGCTGGTAGGAGTTCAGCAGTTCAAGATAACTGGAAGGAGTCGAATAACATCTATCCAGTGAGTACTGCAAGACTTCAGGCTCTTCCCCTTCCAGCAGCTCCCTGCTGAGCCTGGAGAAGTA
i manLeu1.NW_012105087v1          C 0 C 0
e otoGar3.GL873592                  8639199 1079 -   9938236 I
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626157   3 +  47448759 I
e tarSyr2.KE942496v1                 167861   8 +    410062 I
e gorGor5.CYUI01015145v1            3800357   0 -   8455952 C
e panTro5.chr1                    208002604   0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604   0 -   3775709 C
e macFas5.chr1                    211827118   0 + 227556264 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505   0 +   1280666 I
e macNem1.NW_012017688v1           11404446   0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    262446   3 +    297174 I

a score=12243.000000
s hg38.chr1_KI270711v1_random         11094 7 +     42210 GGAAAAA
s panPan2.chr1                    208136529 7 - 229774977 GGAAAAA
i panPan2.chr1                    C 0 C 0
s macFas5.chr1                    211827118 7 + 227556264 GGAAAAA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11404446 7 -  14060431 GGAAAAA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1             748236 7 +   2461138 GGAAAAA
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201380657 6 - 220367699 -GGAAAA
i papAnu3.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             922557 7 +   1325925 GGAAAAA
i manLeu1.NW_012105087v1          C 0 C 0
e otoGar3.GL873592                  8639199 1079 -   9938236 I
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626157 3 +  47448759 I
e tarSyr2.KE942496v1                 167861 8 +    410062 I
e gorGor5.CYUI01015145v1            3800357 0 -   8455952 C
e panTro5.chr1                    208002604 0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604 0 -   3775709 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e rheMac8.chr1                    121925770 5418 + 225584828 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505 0 +   1280666 I
e nomLeu3.chr24_GL397604_1_random    262446 3 +    297174 I

a score=42196.000000
s hg38.chr1_KI270711v1_random         11101 21 +     42210 GTAAAGAATAAGCCA-GGGGGA
s panPan2.chr1                    208136536 21 - 229774977 GTAAAGAATAAGCCA-GGGGGA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3800357 21 -   8455952 GTAAAGAATAAGCCA-GGGGGA
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211827125 22 + 227556264 GTAAAGAATAAGCCAGGGGGGA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11404453 22 -  14060431 GTAAAGAATAAGCCAGGGGGGA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1             748243 21 +   2461138 CTGAAGAGTAAGCCA-GGGAAA
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201380663 21 - 220367699 GTAAAGAATAAGCCA-GGGGGA
i papAnu3.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             922564 21 +   1325925 CTGAAGAGTAAGCCA-GGGAAA
i manLeu1.NW_012105087v1          C 0 C 0
e otoGar3.GL873592                  8639199 1079 -   9938236 I
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                     3626157  3 +  47448759 I
e tarSyr2.KE942496v1                 167861  8 +    410062 I
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e rheMac8.chr1                    121925770 5418 + 225584828 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505  0 +   1280666 I
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=126203.000000
s hg38.chr1_KI270711v1_random         11122 50 +     42210 ATCAGAAACCACACAGCCCCAGCTAGATTTCATGGCTAACATAAGGAAGA
s panPan2.chr1                    208136557 50 - 229774977 ATCAGAAACCACACAGCCCCAGCTAGATTTCATGGCTAACATAAGGAACT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3800378 49 -   8455952 ATCAGAAACCACACAGCCCCAGCTAGATTTCATGGCTAACATAAGGAAT-
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211827147 50 + 227556264 ATCAGAAACCACACAGTGCCAGCTAGATTTCATGGGTAATATAAGGAAGT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11404475 50 -  14060431 ATCAGAAACCACACAGTGCCAGCTAGATTTCATAGGTAATATAAGGAAGT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1             748264 50 +   2461138 ATCAGACATCGCAGAGCCCCAGTTAGATTTCGTGGGTAGCATAAGGAAGT
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201380684 50 - 220367699 ATCAGAAACCACACAGCCCTAGCTAGATTTCATAGGTAACATAAGGAAGT
i papAnu3.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             922585 50 +   1325925 ATCAGACACCGCAGAGCCCCAGCTAGATTTCGTGGGTAGCATAAGGAAGT
i manLeu1.NW_012105087v1          C 0 C 0
s calJac3.chr18                    43914325 50 -  47448759 ATAAGACACCGCAGAGCCCCAACTAGATTTCATGGGTAGCACAAGTAAAT
i calJac3.chr18                   n 3 C 0
e otoGar3.GL873592                  8639199 1079 -   9938236 I
e nasLar1.chr1                    110450863 3462 - 215897965 I
e tarSyr2.KE942496v1                 167861  8 +    410062 I
e panTro5.chr1                    208002604  0 - 228573443 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e rheMac8.chr1                    121925770 5418 + 225584828 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505  0 +   1280666 I
e nomLeu3.chr24_GL397604_1_random    262446  3 +    297174 I

a score=5388.000000
s hg38.chr1_KI270711v1_random         11172 4 +     42210 GTTT
s panTro5.chr1                    208002604 4 - 228573443 GTTT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208136607 4 - 229774977 GTTT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3800427 4 -   8455952 GTTT
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211827197 4 + 227556264 ATTT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11404525 4 -  14060431 ATTT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1             748314 4 +   2461138 GGTT
i cerAty1.NW_012001440v1          C 0 I 13344
s papAnu3.chr1                    201380734 4 - 220367699 GTTT
i papAnu3.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             922635 4 +   1325925 GGTT
i manLeu1.NW_012105087v1          C 0 I 20671
s calJac3.chr18                    43914375 3 -  47448759 GAT-
i calJac3.chr18                   C 0 C 0
e otoGar3.GL873592                  8639199 1079 -   9938236 I
e nasLar1.chr1                    110450863 3462 - 215897965 I
e tarSyr2.KE942496v1                 167861 8 +    410062 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604 0 -   3775709 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e rheMac8.chr1                    121925770 5418 + 225584828 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random    346505 0 +   1280666 I
e nomLeu3.chr24_GL397604_1_random    262446 3 +    297174 I

a score=377283.000000
s hg38.chr1_KI270711v1_random         11176  96 +     42210 GAAAAGAAAAAGGACAGATCCATTAATGAGGTAACAAATTATTGCCTTTATGTT-GGGATTGACTAGGGCCAGGTAGAAAAGGATGAAAGAGAAAGa----------
s panTro5.chr1                    208002608  96 - 228573443 GAAAAGAAAAAGGACAGATCTATTAATGAGGTAACAAATTATTGCCTTCATGTT-GGGACGGACCAGGGCCAGGTagaaaaggatgaaagagaaaga----------
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208136611  97 - 229774977 GAAAAGAAAAAGGACAGATCCATTAATGAGGTAACAAATTATTGCCTTCATGTTGGGGACAGACCAGGGCCAGGTagaaaaggatgaaagagaaaga----------
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3800431  96 -   8455952 GAAAAGAAAAAGGACAGATCCATTAATGAGGTAACAAATTATTGCCTTTATGTT-GGGATAGACCAGGGCCAGGTagaaaaggatgaaagagaaaga----------
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211827201  96 + 227556264 GAAAAGAAAGAGGACAGATCCATGAATGAGGTAACAAACTATTGCCTTTATATT-GGGATAGACCAGGGCCAGGTAAAAAAGGATGAAACAGAAAGa----------
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11404529  96 -  14060431 GAAAAGAAAGAGGACAGATCCATGAATGAGGTAACAAACTATTGCCTTTATATT-GGGATAGACCAGGGCCAGGTAAAAAAGGATGAAacagaaaga----------
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1816005  96 -   2461138 gaaAACAAAAAGGATAGATCCATCAATGAGGTTACAAATTATTGCCTTTATGTT-GTGATAGACCACGGCCAGGTAGAAAAGGATgaaagagaagga----------
i cerAty1.NW_012001440v1          I 5748 C 0
s papAnu3.chr1                    201380738  95 - 220367699 GGAAAGAAAAAGGACAGCTCTATTAATGAGGTAACAGATTATTACCTTAATGTT-GGCACA-ATCAGGGCCAGGTagaaaaggatgaaagagaaaga----------
i papAnu3.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1014982  96 -   1280666 GAAAAGAAAAAGGATAGAGTCATCAATGAGGTTACAAATTATTGCCTTTATGTT-GTGATAGACCAGGGCCAGGTAGAAAAGGATgaaagagaagga----------
i chlSab2.chr20_KE148050v1_random I 3806 C 0
s manLeu1.NW_012105087v1             500120  96 -   1325925 GAAAACAAAAAGGATAGATCCATCAATGAGGTTACAAATTATTGCCTTTATGTT-GTGATAGACCACGGCCAGGTAGAAAAGGATgaaagagaagga----------
i manLeu1.NW_012105087v1          I 6416 C 0
s calJac3.chr18                    43914378 103 -  47448759 --AAAGAAAACACATAGATCCACTAATGACGTAACAAACTATTGCCTT-ATGCT-GGGATGGACAAGAGTAGGGTAGAAAAGAATGAAAGGAAGGGGAGGGAGAAAG
i calJac3.chr18                   C 0 C 0
e otoGar3.GL873592                  8639199 1079 -   9938236 I
e nasLar1.chr1                    110450863 3462 - 215897965 I
e tarSyr2.KE942496v1                 167861   8 +    410062 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604   0 -   3775709 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e rheMac8.chr1                    121925770 5418 + 225584828 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e nomLeu3.chr24_GL397604_1_random    262446   3 +    297174 I

a score=77619.000000
s hg38.chr1_KI270711v1_random         11272 49 +     42210 c-acac--------acacacacacacacacac---acacacacac------------------------------acacacacaGAGTGAG
s panTro5.chr1                    208002704 59 - 228573443 c-atac--------acacacacacacacacac---acacagagattga--------------------gagagagagagagacatagtgag
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208136708 79 - 229774977 c-acac--------acacacacacacacacac---agacacacacacacacacacacacagagagattgagagagagagagagagagtgag
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3800527 56 -   8455952 caacac--------acacacacacacacacac---acacacacacaca------------------------gacaaacagaaagagTGAG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    262449 73 +    297174 c-acac--------acacacccacacacatgc---atacacacacaca------cacacagggagagagagagagacagagagatagtgag
i nomLeu3.chr24_GL397604_1_random I 3 C 0
s macFas5.chr1                    211827297 59 + 227556264 c-acac--------acacacacacacacacac---acacacacacaca--------------------cacacacacacagagagagagag
i macFas5.chr1                    C 0 I 30
s macNem1.NW_012017688v1           11404625 27 -  14060431 c-acac--------acacacacacacac-------------------------------------------------------agagagag
i macNem1.NW_012017688v1          C 0 I 30
s cerAty1.NW_012001440v1            1816101 47 -   2461138 c-acac--------acacagacacacacacac---acacacacacaca--------------------cac------------agagagag
i cerAty1.NW_012001440v1          C 0 I 12
s papAnu3.chr1                    201380833 50 - 220367699 a-acac--------acacacacacacacacaagagacagagatagaca--------------------gag------------agaGTAAG
i papAnu3.chr1                    C 0 I 2
s chlSab2.chr20_KE148050v1_random   1015078 59 -   1280666 c-acac--------acacacacacacacacac---acacagaatgaga--------------------gagagagagaaagagagagagag
i chlSab2.chr20_KE148050v1_random C 0 I 2
s manLeu1.NW_012105087v1             500216 67 -   1325925 c-acacacacagagacacacacacacacacac---acacacacacaca--------------------gagagagagagaaacagagagag
i manLeu1.NW_012105087v1          C 0 I 2
s calJac3.chr18                    43914481 10 -  47448759 ---------------------------------------------------------------------------------AGAGAGTAAG
i calJac3.chr18                   C 0 C 0
e otoGar3.GL873592                  8639199 1079 -   9938236 I
e nasLar1.chr1                    110450863 3462 - 215897965 I
e tarSyr2.KE942496v1                 167861  8 +    410062 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604  0 -   3775709 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e rheMac8.chr1                    121925770 5418 + 225584828 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=978626.000000
s hg38.chr1_KI270711v1_random         11321 172 +     42210 CTCAGTGAATTGGCCAGGTGACACACTGATGAGGGAGTCAACGGTCATTCTCTATTTGAGCTCTCAGGACACACAGTGAACAGTGATCATGAGAAGCATGGCCTCAATAATTTTGCATAAAATGTGCTCAAGTTTCCCTGCAGCCACCATGAGAATACAGCTTTTGAGGTAT
s panTro5.chr1                    208002763 172 - 228573443 CTCAGTGAATTGGCCAGGTGACACACTGATGAGAGAGTCAAAGAACACTCTATATTTGTGCCTTCAGGACACACAATGAACAGTGATCATGAAAAGAGTGGGCTCAATAATTTTGCATAAAATGTGCTCAAGCTTCCCTGCAGTCACCATGAGAATACAGTTTTTGAAGTAT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208136787 172 - 229774977 CTCAGTGAATCGGCCAGGTGACACACTGATGAGAGAGTCAAAGAACACTCTATATTTGTGCCTTCAGGACACACAATGAACAGTGATCATGAAAAGAGTGGGCTCAATAATTTTGCATAAAATGTGCTCAAGCTTCCCTGCAGTCACCATGAGAATACAGTTTTTGAAGTAT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3800583 171 -   8455952 CTCAGTGAATTGGCCAGGTGACACACTGATGAGGGAGTCAAAGGACACTCTGTATTTGTGCCTTCAGGACACACAGTGAACAGTGATCATGAAAAGCATGG-CTCAATAATTTTGCATAAAATGTGCTCAAGTTTCCCTGCAGTCACCATGAGAATACAGCTTTTGAGGTAT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    262522 172 +    297174 CTCAGTGAATTGGCCAGGTGACACACTGATGAGGGAATCAAAGGACACTCTGTATTTGTGCCCTCAGGACGCACAGCAAACAGTGATCATGAAAAGAGTGGGCTTAATAACTTTGCATAAAATGTGCTCAAGTTTCCCTGCAGTCACTATGAGAAGACAGCTTTTGAGGTAT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103751801 171 - 225584828 CTCAGTGAATTGGCCAGGTGACACACTGATGAGGGAGTC-AAGGACACTCTGTATTTGTGCCGTCAGGACACACAGTGAACAGTGATCATGAAAAGAGTGGGCTCAATAATTTCGCATAAAATGTGCTCAAGTTTCCCAGCAGTCACCATGAGAATACAGCTTTTGAGGTAT
i rheMac8.chr1                    I 10 C 0
s macFas5.chr1                    211827386 169 + 227556264 CTCAGTGAATTGGCCAGGTGACACACTGATGAGGGAGTC-AAGGACACTCTGTATTTGTGCCCTCAGGACACACAGTGAACAGTGATGATGAAAAGAGTGGGCTCAATAATTTTGCATAAAATGTGCTC--GTTTCCTGGCAGTCACCATGAGAATACAGCTTTAGAGGTAT
i macFas5.chr1                    I 30 C 0
s macNem1.NW_012017688v1           11404682 169 -  14060431 CTCAGTGAATTGGCCAGGTGACACACTGATGAGGGAGTC-AAGGACACTCTGTATTTGTGCCCTCAGGACACACAGTGAACAGTGATGATGAAAAGAGTGGGCTCAATAATTTTGCATAAAATGTGCTC--GTTTCCTGGCAGTCACCATGAGAATACAGCTTTTGAGGTAT
i macNem1.NW_012017688v1          I 30 C 0
s cerAty1.NW_012001440v1            1816160 171 -   2461138 CTCAGTGAATTGGCCAGGTGACACACTGATGACGGAGTC-AAGGACACTCTGTATTTGTGCCGTCAGGACACACAGTGAACAGTGATCATGAAAAGAGTGGGCTCAATAATTTCGCATAAAATGTGCTCAAGTTTCCCAGCAGTCACCATGAGAATACAGCTTTTGAGGTAT
i cerAty1.NW_012001440v1          I 12 C 0
s papAnu3.chr1                    201380885 172 - 220367699 CTCAGTGAATCGGCCAGGTGACACACTGATGAGGCAGTCAAAGAACACTTTGTATTTGTGTCCTCAGGACGAACAGTGAACAGTGATCATGAAAACAGTGGGCTCAATAATTTGGCATAAAATGTGCTCAAGTTTCCCTGCAGTCACCATGAGAATACAGCTTTTGAGGCAT
i papAnu3.chr1                    I 2 C 0
s chlSab2.chr20_KE148050v1_random   1015139 171 -   1280666 CTCAGTGAATCGGCCAGGTGACACACTGATGAGGGAGTC-AAGGACACTCTGTATTTGTGCCGTCAGGACACACACTGAACAGTGATCATGAAAAGAGTGGGCTCAATAATTTCGCATAAAATGTGCTCAAGTTTCCCGGCAGTCACCATGAGAATACAGCTTTTGAGGTAT
i chlSab2.chr20_KE148050v1_random I 2 C 0
s manLeu1.NW_012105087v1             500285 171 -   1325925 CTCAGTGAATTGGCCAGGTGACACACTGATGAGGGAGTC-AAGGACACTCTGTATTTGTGCCGTCAGGACACACAGTGAACAGTGATCATGAAAAGAGTGGGCTCAATAATTTCGCATAAAATGTGCTCAAGTTTCCCTGCAGTCACCATGAGAATACAGCTTTTGAGGTAT
i manLeu1.NW_012105087v1          I 2 C 0
s calJac3.chr18                    43914491 102 -  47448759 CTCAGTAAACCGTCCAGGTGACACACTGATGAGGGAGTAAAAGGACACTCTGAGTTAGTACCCTCAGGACACACAGCGTACACTGATCATAAAAAC----------------------------------------------------------------------AAGTAT
i calJac3.chr18                   C 0 C 0
e otoGar3.GL873592                  8639199 1079 -   9938236 I
e nasLar1.chr1                    110450863 3462 - 215897965 I
e tarSyr2.KE942496v1                 167861   8 +    410062 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604   0 -   3775709 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=626209.000000
s hg38.chr1_KI270711v1_random         11493 102 +     42210 GGTCAACCTTCACTAGGTTAGTAAATGATAAGGGTAGGAAGAAATGGAAACCTAAACATTTACTCTAATGAGAACCAAAAAGCAATGT-AGTAGGCATAATTT
s panTro5.chr1                    208002935 102 - 228573443 GGTCAACCTTCACTAGGTTAGTAAATGAGAAGGATAGGAAGAAATGGAAACCTAAACATTTACTGTAATGAGAACCAAAA-GCAATGTTAGTAGACATAATTC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208136959 102 - 229774977 GGTCAACCTTCACTAGGTTAGTAAATGAGAAGGATAGGAAGAAATGGAAACCTAAACATTTACTGTAATGAGAACCAAAA-GCAATGTTAGTAGACATAATTC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3800754 101 -   8455952 GGTCAACCTTCACTAGGTTAGTAAATGATAAGG-TAGGAAGAAATGGAAACCTAAACATTTACTCTAATGAGAACCAAAAAGCAATGT-AGTAGGCATAATTC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    262694 102 +    297174 GGTCAACCTTCACTAGGTTAGTAAATGATAAGGGTAGGAAGAAAAGAAAACCTAAACATTTAATGTAATGAGAACCAAAA-GCAATGTTAGTAGGCATAATTC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103751972 102 - 225584828 GGTCAACCTTCACTATGTTAGTAAATGATAAGGGTAGGAAGAAATGGAAACCTAAACATTTACTGTAATGAGAATCAAAA-GCAATGTTAGTAGGGGTAATTC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211827555 100 + 227556264 GGTCAACCTTCACTAGGTTAGTAAATGATAAGGGTAGGAAGAAATGGAAACCTAAACA--TACTGTAATGAGAATCAAAA-GCAATGTGAGTAGGTGTAATTC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11404851 102 -  14060431 GGTCAACCTTCACTAGGTTAGTAAATGATAAGGGTAGGAAGAAATGGAAACCTAAACATTTACTGTAATGAGAACCAAAA-GCAATGTTAGTAGGTGTAATTC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1816331 102 -   2461138 GGTCAACCTTCACTGTGTTAGTAAATGATAAGGGTAGGAAGAAATGGAAACCTAAACATTTACTGTAATGAGAATCAAAA-GCAATGTTAGTAGGAGCAATTC
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201381057 102 - 220367699 GGTCAACCTTCAGTAGGTTAGTAAATGATAAGGGTAGGAAAAAATGGAAACCTAAATATTTACGGTAATGAAAACCAAAA-GCAATATTAGTAGGCATAATTC
i papAnu3.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1015310 102 -   1280666 GGTCAACCTTCACTAGGTTAGCAAATGATAAGGGTAGGAAGAAATGGAAACTTAAACATTTACTGTAATGAGAACCAAAA-GCATTGTTAGTAGGCATAATTC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             500456 102 -   1325925 GGTCAACCTTCACTATGTTAGTAAATGATAAGGGTAGGAAGAAATGGAAACCTAAACATTTACTGTAATGAGAATCAAAA-GCAATGTTAGTAGGGGTAATTC
i manLeu1.NW_012105087v1          C 0 C 0
s calJac3.chr18                    43914593 101 -  47448759 GGTCAACCTACAGCA-GTTAGTAAATGGTAAGGGGAGGAAGAAACGGAAACCTAAATATCTATTGCAATGAAAACCAACA-GCGATGTTTGTAGAAATACTTC
i calJac3.chr18                   C 0 I 1
s otoGar3.GL873592                  8640278  90 -   9938236 GGTCAACTGATATTTTGTACAAAAGTTAAGAAGTTAATACGAAATGGAAACCAATACAAATACCACAGTGAGAACATAAG-------------AAGATAATTT
i otoGar3.GL873592                I 1079 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e tarSyr2.KE942496v1                 167861   8 +    410062 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e colAng1.NW_012114988v1            3733604   0 -   3775709 C
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=87710.000000
s hg38.chr1_KI270711v1_random         11595 13 +     42210 AGACTTGTCTGAC----
s panTro5.chr1                    208003037 13 - 228573443 AGACTTGTCTGAC----
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208137061 13 - 229774977 AGACTTGTCTGAC----
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3800855 13 -   8455952 AGACTTGTCTGAC----
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    262796 13 +    297174 AGACTTGTCTGAC----
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103752074 13 - 225584828 AGACTTGTCTGAC----
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211827655 13 + 227556264 AGACTTGTCTGAC----
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11404953 13 -  14060431 AGACTTGTCTGAC----
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1816433 13 -   2461138 AGACTTGTCTGAC----
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201381159 13 - 220367699 AGACTTGTCTGAT----
i papAnu3.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1015412 13 -   1280666 AGACTTGTCTGAC----
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             500558 13 -   1325925 AGACTTGTCTGAC----
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3733604 13 -   3775709 AGACTTGTCTGAT----
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                    43914695 12 -  47448759 GGATTTGTTGAA-----
i calJac3.chr18                   I 1 n 1
s otoGar3.GL873592                  8640368 13 -   9938236 ----CTGGTTGGCTAAA
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e tarSyr2.KE942496v1                 167861  8 +    410062 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=821069.000000
s hg38.chr1_KI270711v1_random         11608 126 +     42210 AAGACAAAATCATTATTTTCAGCATGTACT-GTTTTCCCTGGACTTGGCATCTCCAGGTGTCAACATCAAATTAACTGTCCACAATTTCTCAGACTCACCTGGGACCTGTTGCCTCTTGGTCCTCCT
s panTro5.chr1                    208003050 126 - 228573443 AAGATGAAATCATTATTTTCAGCATGTACT-GTTTTCCCCGGACTTGGCATCTCCAGGTGTCAACATCAAATTAACTGTCCATAATTTCTCAGACTCACCTGGGACTTGTGGCCTCTTGGTCCTCCT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208137074 126 - 229774977 AAGATGAAATCATTATTTTCAGCATGTACT-GTTTTCCCCGGACTTGGCATCTCCAGGTGTCAACATCAAATTAACTGTCCATAATTTCTCAGACTCACCTGGGACTTGTGGCCTCTTGGTCCTCCT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3800868 125 -   8455952 AAGAC-AAATCATTATTTTCAGCATGTACT-GTTTTCCCTGGACTTGGCATCTCCAGGTGTCAACATCAAATTAACTGTCCACAATTTCTCAGACTCACCTGGGACCTGTTGCCTCTTGGTCCTCCT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    262809 126 +    297174 AAGATGAAATCATTATTTTCAGCATGTACT-GTTTTCCCTGGACTTGGCGTCTCCAGGTGTCAACACCAAATTAACTGTCCACAATTTCTCAGACTCACCTGGGATCTGTTGCCTCTTGGTCCTCCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103752087 126 - 225584828 AAGTTGAAATCATTATTTTCAGCATGTACT-GTTTTCCTTGGACTTGGCATCTCCAGGTGTCAACATCAAATTAATAGTCCACAATTTCTCAGACTCACCTGGGACCTGTGTCCTCTTGCTCCTACT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211827668 126 + 227556264 AAGATGAAATCATTATTTTCAGCATGTTCT-ATTATCCCTGAACTTGGCGTCTCCAGATGTCAACATCAGTTTAACTGTCCACAATTTCTCAGACTCACCTGGGACATGTTGCCTCTTCGTCCTCCT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11404966 126 -  14060431 AAGATGAAATCATTATTTTCAGCATGTTCT-GTTATCCCTGAACTTGGCGTCTCCAGATGTCAACATCAGTTTAACTGTCCACAATTTCTCAGACTCACCTGGGACATGTTGCCTCTTCGTCCTCCT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1816446 126 -   2461138 AAGATAAAATCATTATTTTCAGCATGTACT-GTTTTCCCTGGACTTGGCATCTCCAGGTGTAAACATCAAATTAATAGTCCACAATTTCTCAGACTCACCTGGGACCTGTGTCCTCTTGGTCCTACT
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201381172 126 - 220367699 AAGGCAAAATAACTCTTTTCAGCATGTACT-GTTTTCCCTGCACTTGGCGTCTCTAGGTGTCAACAGCAAATAAACTGTCCACAATTTCTCAGACTCACCTGGGACCTGTGGCCTCTTGGTCCTCCT
i papAnu3.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1015425 126 -   1280666 AAGATGAAATCTTTATTTTCAGCATGTACT-GTTTTCCCTGGACTTGGCGTCTCCAGGTGTCAACATCAAATTAACAGTCCACAATTTCTCAGACTCACCTGGGACCTGTGGCCTCTTGGTCCTCCT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             500571 126 -   1325925 AAGATGAAATCATTATTTTCAGCATGTACT-GTTTTCCCTGGACTTGGCATCACCAGGTGTCAACATCAAATTAATAGTCCACAATTTCTCAGACTCACCTGGGACCTGTGTCCTCTTGGTCCTACT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3733617 126 -   3775709 AAGGCAAAATCACTATTTTCAGCATGTACT-GTTTTCCCTGCACTTGGCGTCTCTAGGTGTCAACAGCAAATTAACTGTCCACAATTTCTCAGACTCACCTGGGACCTGTGGCCTCTTGGTCCTCCT
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8640381 115 -   9938236 TGGATGAAATAGGTATATTCACCCCTTAATCATTTTCCCTGGATATGAGTTCTGCAG------------AATTAATAGCCCAGGATTTTTCCAAATTGCCGGGGGGCAATTGTTTCTTGTCTTTTCA
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                    43914707   1 -  47448759 I
e tarSyr2.KE942496v1                 167861   8 +    410062 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803289 268 -   4070394 T
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=28305.000000
s hg38.chr1_KI270711v1_random         11734 5 +     42210 TTTTC-
s panTro5.chr1                    208003176 5 - 228573443 TTTTC-
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208137200 5 - 229774977 TTTTC-
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3800993 5 -   8455952 TTTTC-
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    262935 5 +    297174 TTTTC-
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103752213 5 - 225584828 TTTTC-
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211827794 5 + 227556264 TTTAC-
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11405092 5 -  14060431 TTTAC-
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1816572 5 -   2461138 TTTTC-
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201381298 5 - 220367699 TTTTC-
i papAnu3.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1015551 5 -   1280666 TTTTC-
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             500697 5 -   1325925 TTTTC-
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3733743 5 -   3775709 TTTTC-
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2803021 5 -   4070394 TTCTT-
i saiBol1.JH378257                T 268 C 0
s otoGar3.GL873592                  8640496 5 -   9938236 -TCACT
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                    43914707 1 -  47448759 I
e tarSyr2.KE942496v1                 167861 8 +    410062 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=1263617.000000
s hg38.chr1_KI270711v1_random         11739 172 +     42210 ACTTG-----ATCCCACCGATGT-CCTGCAAATAAATTCAGATGGGGCCTCTTACATTAAGCAGTTCTTCCTTGCACACAGAAACATTCCTCTGTCCAATCCTAACACAGGTACATCAGTCTGGTCAGTG-TGAGAACAGGAGACTTTGAGAGAAATATTCCAGTAGG-CCTGAGGTCAA
s panTro5.chr1                    208003181 172 - 228573443 ACTTG-----ATCACACCAATGT-CCTGCAAATAAATTCACACAGGGCCTCTTACATGAAGCAGTTCTTCCTTGCACACGGAAACATTCCTCTGTCCAATCCTAACACAGGGACATCAGTCTTCTCAGTG-TGAGAACAGGAGACTTTGAGAGAAATATACCAGGAGG-CCTGAGGGCAA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208137205 172 - 229774977 ACTTG-----ATCACACCAATGT-CCTGCAAATAAATTCACACAGGGCCTCTTACATGAAGCAGTTCTTCCTTGCACACGGAAACATTCCTCTGTCCAATCCTAACACAGGGACATCAGTCTTCTCAGTG-TGAGAACAGGAGACTTTGAGAGAAATATACCAGGAGG-CCTGAGGGCAA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3800998 170 -   8455952 ACTTG-----ATC-CACCGATGT-CCTGCAAATAAATTCAGAT-GGGCCTCTTACATTAAGCAGTTCTTCCTTGCACACAGAAACATTCCTCTGTCCAATCCTAACACAGGGACATCAGTCTTGTCAGTG-TGAGAACAGGAGACTTTGAGAGAAATATTCCAGTAGG-CCTGAGGTCAA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    262940 172 +    297174 ACTTG-----CTCACATCGATGT-CCTGAAAATAAATTCAGATGGGGCCTCTTACATTAAGCAGTTCTTCCTTGCACACAGAAACCTTCCTCTGTCCAATCCTAACACAGGGACATCAGTTTTCTCAGTG-TGAGAACAGGAGACTTTGAGAGAAATATACCAGGAGT-CCTGAGGTCAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103752218 172 - 225584828 ACTTG-----ATCCCACCAATGT-CCTGCAAATAAATTCAGATAGGGCCTCTTACATTAAGCAGTTCTTCCTTGCACACAGAAACATTCCTCTGTCCAATCCTAACACAGGGCCATCAGTCTTCTCAGTG-TGAGAACAGGAGACTTTGAGAAAAATATACCAGGAGG-CCTGAGGTCAA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211827799 171 + 227556264 ACTTG-----ATCCCACCGATGC-CCTGCAAAT-AATTCAGATAGGGCCTCTTACATTAAGCAGTTCTTCCTTGCACACAGAAACATTCCTCTGTCCAATCCTAACACAGGGACATCAGTCTTCTCAGTG-TGAGAACAGGAGACTTTGAGAGAAATATAACAGAAGG-CCTGAGGTCAA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11405097 171 -  14060431 ACTTG-----ATCCCACCGATGC-CCTGCAAAT-AATTCAGATGGGGCCTCTTACATTAAGCAGTTCTTCCTTGCACACAGAAACAGTCCTCTGTCCAATCCTAACACAGGGACATCAGTCTTCTCAGTG-TGAGAACAGGAGACTTTGAGAGAAATATAACAGAAGG-CCTGAGGTCAA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1816577 172 -   2461138 ACTTG-----ATCCCACCGATGT-CCTGCAAATAAATTCAGACGGGGCCTCTTACATTAAGCAGTTCTTCCTTGCACACAGAAACAGTCCTCTGTCCAATCCTAACACAGGGACATCAGTCTTCTCAGTG-TGAGAACAGGAGACTTTGAGAGAAATATACCAGGAGG-CCTGAGGTCAA
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201381303 172 - 220367699 ACTTC-----ATCACACCAATGT-CCTGCAAAGAAATTCAGATGGGGCCTCTTACATGAAGCAGTTCTTCCTTGCACACACAAACATTCCTCTGTCCAATCCTAACACAGGGACATCAGTCTTCTCAGTG-TGGGAACAGAAGACTTTGAGAGAAACATAACCAGAGG-CATGAGGTCAA
i papAnu3.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1015556 171 -   1280666 ACTTG-----ATCACACCGATGT-CCTGCAAATAAATTCAGATGGGGCCTCTTACATGAAGCAGTTCTTCCTTGCACACAGAAACATTCCTCTGTCCAATCCTAACACAGGGACATCAGTCTTCTCAGTG-TGAGAACAGGAGACTTTGAGAGTAATATACCA-GAGG-CCTGAGGTCAA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             500702 172 -   1325925 ACTTG-----ATCCCACCGATGT-CCTGCAAATAAATTCAGATAGGGCCTCTTACATTAAGCAGTTCTTCCTTGCACACAGAAACATTCCTCTGTCCAATCCTAACACAGGGACATCAGTCTTCTCAGTG-TGAGAACAGGAGACTTTGAGAAAAATATACCAGGAGG-CCTGAGGTCAA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3733748 172 -   3775709 AATTC-----ATCACACCAGTGT-CCTGCAAATAAATTCAGATGGGGCCTCTTACATGAAGCAGCTCTTCCTTGCACACAGAAACATTCCTCTGTCCAATCCTAACACAGGGACATCAGTCTTCTCAGTG-TGGGAACAGAAGACTTTGAGAGAAACATAACCGCAGG-CCTGAGGTCAA
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2803026 165 -   4070394 GCTTA-----TTTTAATCTCTGC-------AATAAATTCAGACAGGGACAGACAAAATAAGCCAAT-TCCCCTACACCC-GCAACAGTCCACTGTCTGATCCCTGCACAGGGACCTCAGGCTCCTCAGCA-TGAGAACAGGACAATGTGAGAGACAGACTTCAGGAGGTCCCGAGGCCAA
i saiBol1.JH378257                C 0 I 100
s tarSyr2.KE951269v1                  10305 173 +     19294 GTTTGCAGGCATCATATAGATTT-TCTAAAAGTGAATTCAGGTGTG---TGTCACATTAAGGAGATCCCTCTC-CAGACATCTCTTATTCACGGTCCACTTCCAACATAGGGACATCAGTCTCCTCAATG-TGAGAATAGGACATTTTTAGAGCTTTATTGCAGAGGG-CCTGGGCTCAT
i tarSyr2.KE951269v1              n 8 C 0
s otoGar3.GL873592                  8640501 163 -   9938236 TCATA-----ATCATTTTGATTTTTCTGTAAATAAATTAAGGCCTG------TGCCTTAAT---TTACACTTTACACAT-GCCCCAATATTGTGTCCAA-CCGATCACAGGCACATAAATACACTCAGTGTTAAGAATAGGATATTGTGAAAGAAATTTTCCAGGAAG-CTTCAGTCTGG
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                    43914707   1 -  47448759 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=258483.000000
s hg38.chr1_KI270711v1_random         11911 35 +     42210 GTCTTGAGAAAACTGGCTTGGGTT-CTTTCA-TGAGC
s panTro5.chr1                    208003353 35 - 228573443 GTCTTGAGAGAAGTGACTTGGTTC-CTTTCA-TGAGC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208137377 35 - 229774977 GTCTTGAGAGAACTGACTTGGTTC-CTTTCA-TGAGC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3801168 34 -   8455952 GTCTTGAGAAAACTGGCTTGGTT--CTTTCA-TGAGC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    263112 35 +    297174 GTCTTGAGAGAACTGACTTGGTTC-CTTTCT-TGAAC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103752390 35 - 225584828 GTCTTGAAAGAACTGACTTGGTTC-CTTTCA-TGAGC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211827970 35 + 227556264 GTCTTGAGAGAACTAACTTGGTTC-CTTTCA-TGAGC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11405268 35 -  14060431 GTCTTGAGAGAACTAACTTGGTTC-CTTTCA-TGAGC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1816749 35 -   2461138 GTCTTGAAAGAACTGACTTGGTTC-CTTTCA-TGAGC
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201381475 35 - 220367699 GTCTTGAGAGAACTGACTTGGTTC-CTTTCA-TGAGC
i papAnu3.chr1                    C 0 I 16767
s chlSab2.chr20_KE148050v1_random   1015727 35 -   1280666 GTCTTGAGAGAACTGACTTGGTTC-CTTTCA-TGAGC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             500874 35 -   1325925 GTCTTGAGAGAACTGACTTGGTTC-CTTTCA-TGAGC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3733920 35 -   3775709 GTCTTGAGAGAACTGACTTGGTTC-CTTTCA-GGAGC
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE951269v1                  10478 36 +     19294 GGCTTGGGACAACTGTCTTGGTTG-GTTTTGCTGAGC
i tarSyr2.KE951269v1              C 0 I 1
s otoGar3.GL873592                  8640664 36 -   9938236 GCCTTGTCAGAGTTCACTGGGTTTGCTTTCC-TAAAC
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                    43914707  1 -  47448759 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803191 100 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=435461.000000
s hg38.chr1_KI270711v1_random         11946  97 +     42210 -CTTGGGCAAAATTACCCTGTTTTGGAATGTTATCTTCCCTATGTGCTCTGTCCTAGGTTTGTGTACACAAAT----------------------GAGCAACT--TTTTCCCCAA-----TAAATTG
s panTro5.chr1                    208003388  97 - 228573443 -TTTGGGCAAAATGCCCCTGTTTTGGAATGTGATCTTCCCAGTGTGCTCTGTCCTAGGTTTGCGTACACAAAT----------------------GAGCAATG--TTTTTCCCAA-----TAGATTT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208137412  96 - 229774977 -CTTGGGCAAAATG-CCCTGTTTTGGAATGTGATCTTCCCAGTGTGCTCTGTCCTAGGTTTGTGTATACAAAT----------------------GAGCAATG--TTTTTCCCAA-----TAGATTT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3801202  96 -   8455952 -CTTGGGCAAAATTCCCCTGTTTTGGAATGTTATCTTCCCTATGTGCTCTGTCCTAGGTTTGTGTACACAAAT----------------------GAGCAAT---TTTTTCCCAA-----TAAATTG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    263147  97 +    297174 -CTTGGGCAAAATTCCCCTGTTTTGGAACATTATCTTCCCAATGTGTTCTGTCCTAGGTTTGTGTACACAAAT----------------------GAGCAATA--TTTCTCCCAA-----TAGAGTT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103752425  92 - 225584828 -CTTGGGCAAAATTCCCGT--TTTGGAACGTTATCTTCCCAATGAGCTCTGTCCTAGGTTTCTGT--CCAAA-----------------------GAGCAAAG--TCTTTCCCAA-----TAGATTG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211828005  93 + 227556264 -CTTGGGCAAAATTCCCCTG-TTTGGAACGTTATCTT-CCAATGTGCTCTGTCCTAGGTGTGTGT--ACAAAT----------------------GAGCAATG--TCTTTCCCAG-----TAGATTT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11405303  93 -  14060431 -CTTGGGCAAAATTCCCCTG-TTTGGAACGTTATCTT-CCAATGTGCTCTGTCCTAGGTGTGTGT--ACAAAT----------------------GAGCAATG--TCTTTCCCAG-----TAGATTT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1816784  93 -   2461138 -CTTGGGCAAAATTTCCGT--TTTGGAACATTATCTTCCCAATGAGCTCTGTCCTAGGTTTCTGT--ACAAAT----------------------GAGCAAAG--TCTTTCCCAA-----TAGATTG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1015762  92 -   1280666 -CTTGGGCAAAATTCCCGT--TTTGGAACGTTATCTT-CCAATGTGCTCTGTCCTAGGTTTGTGT--ACAAAT----------------------GAGCAATG--TCTTTCCCAA-----TAGATTG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             500909  93 -   1325925 -CTTGGGCAAAATTCCCAT--TTTGGAACGTTATCTTCCCAATGAGCTCTGTCCTAGGTTTCTGT--ACAAAT----------------------GAGCAAAG--TCTTTCCCAA-----TAGATTG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3733955  97 -   3775709 -CTTGGGCAAAATTCCCCTGTTTTGGAATGTTATCTTCCCAGTGTCATCTGTCCTAGGTTTGTGTACACAAAT----------------------GAGCAATG--ACCTTCCCAA-----GAGATTT
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE951269v1                  10515  81 +     19294 -AGGGGGCACAATCTCCATGTTCACGTAGGTTATCACTCCAATATCATCTGT---------------GCATG-----------------------GACTAATT--TATTTCCCCA-----CAGGCCA
i tarSyr2.KE951269v1              I 1 C 0
s otoGar3.GL873592                  8640700 126 -   9938236 AATTAGGCA-AATTTCCCTAATATGACAGGTCATCATCCCAATATCCTCTGTTCGGAGTCTGTGCAAACAGATAGCATGTTAAGAGATCCTAGAAGTGCAATAATCTCTTCCCAACCTGGTAAACTG
i otoGar3.GL873592                C 0 I 428
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                    43914707   1 -  47448759 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803191 100 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=192804.000000
s hg38.chr1_KI270711v1_random         12043 36 +     42210 TAGGCAAATAGTTCTAACACCTCATAGGAGAGATAC
s panTro5.chr1                    208003485 36 - 228573443 GAGGCAAATCGTTCTAACGCCTCATAGGAGAGATAC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208137508 36 - 229774977 GAGGCAAATCGTTCTAACGCCTCATAGGAGAGATAC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3801298 36 -   8455952 TAGGCAAATAGTTCTAACACCTCATAGGAGAGATAC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    263244 36 +    297174 TAGGCAAATAGTTCTAACACCTTGTAGGAGAGATAC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103752517 36 - 225584828 TAGGCAAATAGTTCTAACACCTCGTAGAAGAGATAC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211828098 36 + 227556264 TAGGCAAATAGTTCTAAGACCTCGTAGTAGAAATAC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11405396 36 -  14060431 TAGGCAAATAGTTCTAAGACCTCGTAGTAGAAATAC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1816877 36 -   2461138 TAGGCAAATAGTTCTAACACCTCGTAGAAGAGATAC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1015854 36 -   1280666 TAGGCAAATAGTTCTAACACCTCGTAGAAGAGATAC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             501002 36 -   1325925 TAGGCAAAGAGTTCTAACACCTCGTAGAAGAGATAC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3734052 36 -   3775709 TAGGCAAATAGTTCTAACACCTCGTCGGAGAGAGAC
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE951269v1                  10596 35 +     19294 TAGGT-AGCAGCCCACCTGCCTTTTAGGAGGAAAAC
i tarSyr2.KE951269v1              C 0 n 0
e otoGar3.GL873592                  8640826 428 -   9938236 I
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                    43914707  1 -  47448759 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803191 100 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=1316191.000000
s hg38.chr1_KI270711v1_random         12079 253 +     42210 TTCAATATTAAGCTTTCTCTCATCAAATACCCAGAATTTGATAGTTTATGAGATTGTGGACACAGAGATTTGATGAAGGGGTGCAATGTACCAGCTCTTGAGTCAAAATGAAACTTGGTTCTACACAGAAGCATCAGCTATTATGGCTTTTGTGGGTGAAAAGTCAGCCATTTATCTAGAAAATATACCAGGAACATGACGGACAGATGAGCTAAAGCAAGCGAACTTAGAAGACACAGAAAATGGGAATAAA
s panTro5.chr1                    208003521 251 - 228573443 TGCAATATTCAGGCTTCTCTCATCAAATACCCAGA-TTTGATAGTTTATGAGACTGTGGACACTGAGATTTGATGGAGGGGTGCAATGTACCAGCTCTTGAGTCAAAGTGACACTTGGTTCTACACAGAAGCATCAGCTATCATGGCTTTTGTGGGTGAAAAGTCAGCCATTTATCTAGAAAACATACCAGCAAGATGATGGACAGATGAGCTACGACAAGCCAACTTAGAAGACACAGAAAGGGGGAA-AAA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208137544 251 - 229774977 TGCAATATTCAGGCTTCTCTCATCAAATACCCAGA-TTTGATAGTTTATGAGACTGTGGACACTGAGATTTGATGGAGGGGTGCAATGTACCAGCTCTTAAGTCAAAGTGACACTTGGTTCTACACAGAAGCATCAGCTATCATGGCTTTTGTGGGTGAAAAGTCAGCCATTTATCTAGAAAACATACCAGCAAGATGATGGACAGATGAGCTACGACAAGCCAACTTAGAAGACACAGAAAGGGGGAA-AAA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3801334 250 -   8455952 TTCAATATTAAGCTTTCTCTCATCAAATACCCAGAATTTGATAGTTTATGAGATTGTGGACACAGAGATTTGATGAAGGGGTGCAATGTACCAGCTCTTGAGTCAAAATGAAACTTGGTTCTACACAGAAGCATCAGCTATTATGGCTTTTGT-GGTGAAAAGTCAGCCATTTATCTAGAAAACATACCAGGAACATGATGGACAGATGAGCTA-AACAAGCGAACTTAGAAGACACAGAAAATGGGAT-AAA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    263280 253 +    297174 TGCAATATTCAGGATTCTCTCATCAAATACCCAGGATTTGATAGTTTACGAGATTGTGGACACTGAGATTTGATGGAGGGGTGCAATGTACCAGCTCTTGAGTCAAAATGAGACTTGGTTCTACAAAGAAGCATCAGCTATTATGGCTTTTGTGGGTGAAAAGTCAGCCATTTATCTAGAAAACATACCAGCAAGATGATGAACAGATGGGCTAAAACAAGCCAACTTAGAAGACACAGAAAATGGGGATAAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103752553 251 - 225584828 TGCAATATTCAGGCTTCTCTCATCAAATACCCAGGATTTGATACTTTACGAGATTGGGGACACTGAGATTTGATGAAGGGGTGCAATGTATCAGCTCTTGAGTCACAATGA-ACTTGGTTCTACACAGAAGCATCAGCTATTATGG-TTTTGTGGATGAAAAGTCAGTCATTTATCTAGAAAACATACCAGCAAGATGATGGACAGCTGAGCTAAAACAAGCCAACTTAGAAGACACAGAAAATGGGGAAGAA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211828134 252 + 227556264 TACAATATTCAGGCTTCTCTCATCAAATACCCAGGATTTGATACTTTACGAGATTGGGGACACTGAGATTTTATGAAGGAGTGCAATGTACCAGCTCTTGAGTCAAAATAAGACTTGGTTCTACACAGAAGCATCAGCTATTATGG-TTTTGCGGGTGAAAAGTCAGTCATTTATCTAGAAAACATACCAGCAAGAAGATGGACAGATGAGCTAAAACAAGCCAACTTAGAAGACACAGAAAATGGGGATAAA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11405432 252 -  14060431 TACAATATTCAGGCTTCTCTCATCAAATACCCAGGATTTGATACTTTACGAGATTGGGGACACTGAGATTTTATGAAGGAGTGCAATGTACCAGCTCTTGAGTCAAAATAAGACTTGGTTCTACACAGAAGCATCAGCTATTATGG-TTTTGCGGGTGAAAAGTCAGTCATTTATCTAGAAAACATACCAGCAAGAAGATGGACAGATGAGCTAAAACAAGCCAACTTAGAAGACACAGAAAATGGGGATAAA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1816913 251 -   2461138 TGCAATATTCAGGCTTCTCTCATCAAATACCCAGGATTTGATACTTTACGAGATTGGGGACACTGAGATTTGATGAAGGGGTGCAATGTATCAGCTCTTGAGTCACAATGA-ACTTGGTTCTACACAGAAGCATCAGCTATTATGG-TTTTGTGGATGAAAAGTCAGTCATTTATCTAGAAAACATACCAGCAAGATTATGGACAGCTGAGCTAAAACAAGCCAACTTAGAAGACACAGAAAATGGGGATGAA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1015890 251 -   1280666 TGCAATATTCAGGCTTCTCTCATCAAATACCCAGGATTTGATAGTTTACGAGATTGGGGACACTGAGATTTGATGAAGGGGTGCAATGTACCAGCTTTTGAGTCAAAATGA-ACTTGGTTCTACACAGAAGCATCAGCTATTATGG-TTTTGTGGGTGAAAAGTCAGTCATTTATCTAGAAAACATACCAGCAAGACGATGGACAGCTGAGCTAAAACAAGCCAACTGAGAAGACACAGAAAATGGGGATAAA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             501038 251 -   1325925 TGCAATACTCAGGCTTCTCTCATCAAATACCCAGGATTTGATACTTTACGAGATTGGGGACACTGAGATTTGATGAAGGGGTGCAATGTATCAGCTCTTGAGTCACAGTGA-ACTTGGTTCTACACAGAAGCATCAGCTGTTATGG-TTTTGTGGATGAAAAGTCAGTCATTTATCTAGAAAACATACCAGCAAGATGATGGACAGCTGAGCTAAAACAAGCCAACTTAGAAGACACAGAAAATGGGGATGAA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3734088 253 -   3775709 TGTAATATTCAGGTTTCTCACATCAAATACCCAGGATTTGATAGTTTATGACACTGTGGACACTGAGATTTCATGCAGGGGTGTAATATACCAGCTCTTGAGTTACAATGAGACCTGGTTCTACACAGAAGCATCAGCTATTATGGCTTTTGTGGGTGAAAAGTCAGTCATTTATCTAGAAAACATAACAGCAAGACGATGGACAGATGAGCTAAAACAAGCCAACCGAGAAGACACAGAAAATGGGGATACA
i colAng1.NW_012114988v1          C 0 C 0
e otoGar3.GL873592                  8640826 428 -   9938236 I
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                    43914707   1 -  47448759 I
e tarSyr2.KE951269v1                  10631   0 +     19294 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803191 100 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=55356.000000
s hg38.chr1_KI270711v1_random         12332 9 +     42210 TTCAGTGAA
s panTro5.chr1                    208003772 9 - 228573443 TTCAGTGAA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208137795 9 - 229774977 TTCAGTGAA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3801584 9 -   8455952 TTCAGTGAA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    263533 9 +    297174 TTCAGTGAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103752804 9 - 225584828 TTCAGTGAA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211828386 9 + 227556264 TTCAGTGAA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11405684 9 -  14060431 TTCAGTGAA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1817164 9 -   2461138 TTCAGTGAA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1016141 9 -   1280666 TTCAGTGAA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             501289 9 -   1325925 TTCAGTGAA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3734341 9 -   3775709 TTCAGTGAA
i colAng1.NW_012114988v1          C 0 I 6
s otoGar3.GL873592                  8641254 9 -   9938236 tgcaatttg
i otoGar3.GL873592                I 428 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                    43914707 1 -  47448759 I
e tarSyr2.KE951269v1                  10631 0 +     19294 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803191 100 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=292707.000000
s hg38.chr1_KI270711v1_random         12341 58 +     42210 ACCTGGGCCA-------------CATCTTTCACTGAGAGGTAGACAAGGGTGACACT----------TGCCTTGGGCAGGT
s panTro5.chr1                    208003781 58 - 228573443 ACCTGGGTCA-------------CATCTTCCACGGAGAGGTAGACAAGGGTGACACT----------GGCCTTGGGCAGGT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208137804 58 - 229774977 ACCTGGGTCA-------------CATCTTCCACGGAGAGGTAGACAAGGGTGACACT----------GGCCTTGGGCAGGT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3801593 58 -   8455952 ACCTGGGTCA-------------CATCTTTCACTGAGAGGTAGACAAGGGTGACACT----------GGCCTTGGGCAGGT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    263542 58 +    297174 ACCTGGGTCA-------------CATCTTCCACCGAGAGGTAGACAAGGGTGACACT----------GGCCTTGGGCAGGT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103752813 58 - 225584828 ACCTGGGTCA-------------CATCTTCCACTGAGAGGTAGACAAGGGTGACACT----------GGCCTTGGGCAGGT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211828395 58 + 227556264 ACCTGGGTCA-------------CATCTTCCACTGAGAGGTAGACAAGGGTGACACT----------GGCCTTGGGCAGGT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11405693 58 -  14060431 ACCTGGGTCA-------------CATCTTCCACTGAGAGGTAGACAAGGGTGACACT----------GGCCTTGGGCAGGT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1817173 58 -   2461138 ACCTGGGTCA-------------CATCTTCCACTGAGAGGTAGACAAGGGTGACACT----------GGCCTTGGGCAGGT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1016150 58 -   1280666 ACCTGGGTCA-------------CATCTTCCACTGAGAGGTAGACAAGGGTGACACT----------GGCCTTGGGCAGGT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             501298 58 -   1325925 ACCTGGGTCA-------------CATCTTCCACTGAGAGGTAGACAAGGGTGACACT----------GGCCTTGGGCAGGT
i manLeu1.NW_012105087v1          C 0 C 0
s otoGar3.GL873592                  8641263 70 -   9938236 accagggccaggctccaacccgccaccctt--------ggtatatggggctggcgctccacccactgagccataggca---
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e calJac3.chr18                    43914707  1 -  47448759 I
e tarSyr2.KE951269v1                  10631  0 +     19294 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e colAng1.NW_012114988v1            3734350  6 -   3775709 I
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803191 100 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=6006.000000
s hg38.chr1_KI270711v1_random         12399 1 +     42210 A
s panTro5.chr1                    208003839 1 - 228573443 A
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208137862 1 - 229774977 A
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3801651 1 -   8455952 A
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    263600 1 +    297174 A
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103752871 1 - 225584828 A
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211828453 1 + 227556264 A
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11405751 1 -  14060431 A
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1817231 1 -   2461138 A
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1016208 1 -   1280666 A
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             501356 1 -   1325925 A
i manLeu1.NW_012105087v1          C 0 C 0
s calJac3.chr18                     3626160 1 +  47448759 A
i calJac3.chr18                   I 3 C 0
e otoGar3.GL873592                  8641333 0 -   9938236 C
e nasLar1.chr1                    110450863 3462 - 215897965 I
e tarSyr2.KE951269v1                  10631 0 +     19294 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e colAng1.NW_012114988v1            3734350 6 -   3775709 I
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e saiBol1.JH378257                  2803191 100 -   4070394 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=44189.000000
s hg38.chr1_KI270711v1_random         12400 9 +     42210 AAGAACCAC
s panTro5.chr1                    208003840 9 - 228573443 AAGCACTGC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208137863 9 - 229774977 AAGCACTGC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3801652 9 -   8455952 AAGAACCAC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    263601 9 +    297174 AAGAACTCC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103752872 9 - 225584828 GAGAACCGC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211828454 9 + 227556264 AAGAACCAC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11405752 9 -  14060431 AAGAACCAC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1817232 9 -   2461138 GAGAACCGC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1016209 9 -   1280666 GAGAACCAC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             501357 9 -   1325925 GAGAACCGC
i manLeu1.NW_012105087v1          C 0 C 0
s calJac3.chr18                     3626161 9 +  47448759 AAGAACCTC
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2803291 9 -   4070394 AAGAACCTT
i saiBol1.JH378257                I 100 C 0
s otoGar3.GL873592                  8641333 4 -   9938236 -----ccac
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e tarSyr2.KE951269v1                  10631 0 +     19294 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e colAng1.NW_012114988v1            3734350 6 -   3775709 I
e cebCap1.NW_016108146v1             263521 554 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=1425622.000000
s hg38.chr1_KI270711v1_random         12409 200 +     42210 -----ACAGACATGCTTTGGGAACAAAACTCATAAGGAATTTTGTAGCTGGCAAGAGACATTTAATTCAGATGAGCTGATCTGACAGACAACTCCTGGTCATGTGCTGCATAGTTTGGTGTGAGCTTGCCACACCTGCCTTGAG-TTCAATGTCGTGACAGTCAGTCCAGGTTGGCACGGGCATGGCCTGAGACTAGGAAGAGAGC
s panTro5.chr1                    208003849 197 - 228573443 -----ACAGACATGCTTTGGGAACAAAACTCATAAAGAACTTTGTAGCTGGCAAGAGACATTTAACTCAGGTGAGCTGATCTGACAGACAACT---GGACATGTGCTACACAGCTTGGTGTGAGTTTGCCACGCCCGCCTTGTG-TTCAATGTCCTGACAGTCAGTCCAGGGTGGCACAGGCATGGCCTGAGACTAGGAAGAGAGC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208137872 200 - 229774977 -----ACAGACATGCTTTGGGAACAAAACTCATAAAGAACTTTGTAGCTGGCAAGAGACATTTAACTCAGGTGAGCTGATCTGACAGACAACTCCTGGACATATGCTGCACAGCTTGGTGTGAGTTTGCCACGCCCGCCTTGTG-TTCAATGTCCTGACAGTCAGTCCAGGGTGACACAGGCATGGCCTGAGACTAGGAAGAGAGC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3801661 200 -   8455952 -----ACAGACATGCTTTGGGAACAAAACTCATAAGGAATTTTGTAGCTGGCAAGAGACATTTAATTCAGATGAGCTGATCTGACAGACAACTCCTGGGCATGTGCTGCATAGTTTGGTGTGAGTTTGCCACACCTGCCTTGAG-TTCAATGTcgtgacagtcagtccaggttggcacgggcatggcctgagactaggaagagagc
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    263610 200 +    297174 -----ACAGACATGCTTTGGGAACAAAACTCATAAGGAACTTCGTAGCTGGCAAGAGACATTTAATTCAGATGAGCTGATCTGATAGACAACTCCTGGGCATGTGCTGCAGAGCTTGGTGTGAGTTTGCCACACCTGCCTTGAG-TTCAATGTCCTGACAGTCGATCCAGGGTGGCATGGGCATGGCCTGAGACTAGGAAGAGAGC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103752881 200 - 225584828 -----ACAGACATGCTTTGGGAACAAAACTCATAAGGAACTTAGTAGCTGGCAAGAGACATTTAATTCAGAGGAGCTGATCTGACAGACAACTCCTGGGCATGTGCTGCACAGCTTGGTGTGAGTTCGCCACACCTGCCTTGAG-TTCAATGTCCTGACAGTCAGTCAAGGGTGGCAAGGGCATGGCCTGAGACTAGGAAGAGAGC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211828463 200 + 227556264 -----ACAGACATGCTTTGGGAACAAAACTCATAAGGAACTTAGTAGCTGGCAAGAGACATTTAATTCAGATGAGCTGATCTGACAGACAACTCCTGGGCATGTGCTGCAGAGCTTGGTGTGAGTTCGCCACACCTGCCTTGAG-TTCAATGTCTTgacagtcggtcaagggtggcaagggcatggcctgagaccaggaagagagc
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11405761 200 -  14060431 -----ACAGACATGCTTTGGGAACAAAACTCATAAGGAACTTTGTAGCTGGCAAGAGACATTTAATTCAGATGAGCTGATCTGACAGACAACTCCTGGGCATGTGCTGCAGAGCTTGGTGTGAGTTCGCCACACCTGCCTTGAG-TTCAATGTCTTGACAGTCGGTCAAGGGTGGCAAGGGCATGGCCTGAGACCAGGAAGAGAGC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1817241 200 -   2461138 -----ACAGACATGCTTTGGGAACAAAACTCATAAGGAACTTAGTAGCCGGCAAGAGACATTTAATTCAGATGAGCTGATCTGACAGACAACTCCTGGGCATGTGCTGCAGAGCTTGGTGTGAGTTCGCCACACCTGCCTTGAG-TTCAATGTCCTGACAGTCAGTCAAGGGTGGCAAGGGCATGGCCTGAGACTAGGAAGAGAGC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1016218 200 -   1280666 -----ACAGACATGCTTGGGGAACGAAACTCATAAGGAACTTTATAGCTGGCAAGAGATATTTAATTCAGATGAGCTGATCTGACAGACAACTCCTAGGCATGTGCTGCAGAGCTTGGTGTGAGTTTGCCACACTTGCCTTGAG-TTCAATGCCCTGAGAGTCGGTCAAGGGTGGCAAGGGCATGGCCTGAGACTAGGAAGAGAGC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             501366 200 -   1325925 -----ACAGACATGCTTTGGGAACGAAACTCATAAGGAACTTTGTAGCTGGCAAGAGACATTTAATTCAGATGAGCTGATCTGACAGACAACTCCTGGGCATGTGCTGCAGAGCTTGGTGTGAGTTCGCCACACCTGCCTTGAG-TTCAATGTCCTGACAGTCAGTCAAGGGTGGCAAGGGCATGGCCTGAGACTAGGAAGAGAGC
i manLeu1.NW_012105087v1          C 0 C 0
s calJac3.chr18                     3626170 192 +  47448759 -----ACAGACATGCCTGGGGAACAAAACTCATGAGGAACTTGGTAGCTGGCAAGAGACATTTAATTCAGAT---------TGACAGACAACTCGTGGGCATGTGCTGCATAGCTTGGTGTGAGTTTGCAACAGCCGCCTTGGGTTTCAACGTCCTGACAGTTGGTCTAGGGTGCCACGGGCATGGACTGAGACTAGAGAGAGAGC
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2803300 192 -   4070394 -----ACAGACATGCTTGGGGAACAAAACTCATGAGGAACTTGGTAGCTGGAAAGAGACATTGAATTCAGAT---------GGACAGACAGCTCGTGGGCATGTGCTGCATAGCTTGGTGTGAGTGCGCAACACCTGCCTTGGGCTTCAATGTCCTGACAGTCGGTCCAGGGTGCGACGGGCATGGCCTGAGACTAGAGAGAAAGC
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             264075 192 +    407294 -----ACAGACATGCATGGGGAGCAAAACTCATGAGGAACTTGGTAGCTGGCAAGAGGCATTGAATTCAGAT---------TGACAGACAACTCGTGGGCATGCGCTGCATACCCTGGTGTGCGTCTGCAACACTGGCCTTGGGTTTCAATGTCCTGACAGTCGGTCCAGGGTGTGACGAGCACGGCCTGAGACTAGGGAGAGAGC
i cebCap1.NW_016108146v1          I 554 C 0
s otoGar3.GL873592                  8641337 155 -   9938236 ccGAAATTCACATTTTTTGAGAAGGAAAAT-----GAAACATCACACATGAGATGACAAGTTCAATCTAAATTAAGAGGACTGATGGATATACCCCGCCCTCATGCTGCGTAGGTGGGTGTGAAGTTGTCAAGTCAATCTTGAG-TCTGGTGACTTCCCAG---------------------------------------------
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e tarSyr2.KE951269v1                  10631   0 +     19294 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e colAng1.NW_012114988v1            3734350   6 -   3775709 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=4035858.000000
s hg38.chr1_KI270711v1_random         12609 470 +     42210 AAAGCTCACTCACCCACCCCATGCCTGTGCTTCAGACTCGACTCCAGAG--TGATTGAAATCTACATTGATATATAGGTTCAGCCCACAGTGATGGCAAATCTCAGCC----CAACAAGGGGCACAAGGCCCAAAGATTATGGGGTCTACCTGGGCCATGAACTGGAGCTTTATCACCTTCACAATGGAGTACTCACCGCCTATGTCAACAGCC-ATGCAGACTTGCTGTTCCTCTAATGAGTGAAATGTGCCGCTGTAAGACTGGTACGAGGCCAACATTTCAGGAGGAATTGAGAGAGTCGAATAACCTTCATCCCAGGACTCCTGGGGGACTTCCTCCTCTTCAGACTCCTGCAGATTCCTGATGAGCCAGGCAGGACAGGGATGATAGAAGATT-TAACCAACAGACATTAGACAACAAAACCTCCCAGATGATCTGATGGGAGACAGAATGGAGTGGTCACAGAAACCAAAGG
s panTro5.chr1                    208004046 470 - 228573443 AAAGCTCACTGATCCACCCCACGCCTGTGCTTCAGACTCGATTCCAGAG--TGATTGAAATCTACATTGATATATAGGTTCCACCCACAGTGATGGCAACTCTCAGCC----CAACCAGGGGCACAAGGCCCAAAGATTATGGGGTCTACCTGGGACATGAACTGGAGCTTTATCACCTTCACAATGGAGTACTCACTGCCTATGTCAAGAGCC-AAGCCGACTTGCTGTTGCTCTACTGAGTGAAAGGTGCTCCTGTCAGACTGGTATGAGGCAGACATGTCAGCAGGAATTGAGAGAGTCCAATCACCTTCATCCCAGGACTCCTGGGGGGCTTCCTCCTCTTCAGACTCCTGCAGATTCCTGATGAGCCAGGCAGGACAGGGATGACAGAAGATA-TAACCAACAGAGATTAGACAACAAAACCTTCCAGATGATCTGATGGCAGACAGAATGGAGTGCTCACAGAAACCAAAGG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208138072 470 - 229774977 AAAGCTCACTGATCCACCCCACGCCTGTGCTTCAGACTCGATTCCAGAG--TGATTGAAATCTACATTGATATATAGGTTCCACCCACAGTGATGGCAACTCTCAGCC----CAACCAGGGGCACAAGGCCCAAAGATTATGGGGTCTACCTGGGACATGAACTGGAGCTTTATCACCTTCACAATGGAGTACTCACTGCCTATGTCAAGAGCC-AAGCCGACTTGCTGTTGCTCTACTGAGTGAAAGGTGCTCCTGTCAGACTGGTATGAGGCAGACATGTCAGCAGGAATTGAGAGAGTCCAATCACCTTCATCCCAGGACTCCTGGGGGGCTTCCTCCTCTTCAGACTCCTGCAGATTCCTGATGAGCCAGGCAGGACAGGGATGACAGAAGATA-TAACCAACAGAGATTAGACAACAAAACCTTCCAGATGATCTGATGGCAGACAGAATGGAGTGCTCACAGAAACCAAAGG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3801861 468 -   8455952 aaagctcactgacccacCCCATGCCTGTGCTTCAGACTCGACTCCAGAG--TGATTGAAATCTACATTGATATATAGGTTCAGCCCACAGTGATGGCAAATCTCAGCC----CAACAAGGGGCACAAGGCCCAAAGATTATGGGGTCTACCTGGGCCATGAACTGGAGCTTTATCACCTTCACAATGGAGTACTCACTGCCTATGTCAACAGCC-ATGCAGACTTGCTGTTCCTCTAATGAGTGAAATGTGCTGCTGTAAGACTGGTACGAGGCA-ACATTTCAGGAGGAATTGAGAGAGTCGAATAACCTTCATCCCAGGACTCCTGGGGGACTTCCTCCTCTTCAGACTCCTGCAGATTCCTGATGAGCCAGGCAGGACAGGGATGATAGAAGATT-TAACCAACAGACATTAGACAACAAAACCT-CCAGATGATCTGATGGGAGACAGAATGGAGTGGTCACAGAAACCAAAGG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    263810 470 +    297174 CAAGCTCACTGACCCACCCCATGCCTGTTCTTCGGACTCGACTCCAGAG--TGATTGAAATCTACATTGATATATAGGTTCAGCCCACAGTGATGGCAACTCTCAGCC----CAACCAGGGGCACAAGGCCCAAAGATTATGGGGTCTACCTGGGACATGAACTGGAGCTTTATCACTTTCACAATGGAGTACTCACTGCCTACGACAAGAGCC-AAACCGACTTGCTGTTCCTCTAATGAGTGAAAGGTGCTCCTGTAAGACTGGTACGAGGCTGACTTGTCAGGAGGAATTGAGAGAGTCGAATAACCTTCATCCTAGAACTCCTGAGGGGCTTCCTCCTCTTCAGACTCCTGCAGATTCCTGATGAGCCAGGCAGGACAGGGATGACAGAAGATT-TAACCAATAGAGATTAGACAACAAAACCTCCCAGATGTTCTGATGGGAGACAGAATGGAGTGGTCACAGAAACCAAAGG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103753081 470 - 225584828 AAAGCTCACTGACCCACCCCATGCCTGTGCTTCAGACTCAACTCCAGAG--TGATTGAAATCTACACTGATATATAAGTTCAGCTCACAGTGACGGCAACTCTCAGCC----CAACCAGGGGCACAAGGCCCAAAGATTATGGGGTCTACATGGGACATGAACTGGAGCTTCATCACCTTCACAATGGAGTACTCACTGCCTATGTCAAGAGCC-AAGCCGACTTGCTGTTCTTCTAATGAGTGAAAGGTGCTCTTGTAAGACTGGTACAAGGCAGACATGTCAGCAGGAATTGAGAGAGTCAAATAACCTTCATCCCAGGACTCCTAGGGGGCTTCCTCCTCTTCAGACTCCTGCAGATTCCTGATGAGCCAGGCAGCACAGAGATGACAGAAGATT-TAACCAACAGAGATTAGACAACAAAACCCCCCAGATGATCTGATGGGAGAGAGAATGGAGTGGTCACAAAAACCAAAGG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211828663 469 + 227556264 aaagctcactgacccacCCCATGCCTGTGCTTCAGACTCAACTCCAGAG--TGATTGAAATCTACATTGATATATAGGTTTGGGCCACAGTGATGGCAACTCTCAGCT----CAGCCAGGGGTACAAGGCCCAAAGATTATGGGGTCTACCTGGGACATGAACTGGAGCTTTATCACCTTCACAATGGAGTACTCACTGCCTATGTCAAGAGCC-AAGCCGACCTGCTGTTCCTCTAATGAGGGAAAGGTGCTCTTGTAAGACTGGTACGAGGCAGACATATCAGGAGGAATTGAGAGAGTCGAATAACCTTCATCCCAAGACTCCT-GGGGGCTTCCTCCTCTTCAGACTCCTGCAGATTCCTGATGAGCCAGGCAGGACAGAGATGACAGAAGATT-AAACCAACAGAGATTAGACAACAAAACCCCCCAGATGATCTGATGGGAGACAGAATGGAGTGGTCACAGAAACCAAAGG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11405961 469 -  14060431 AAAGCTCACTGACCCACCCCATGCCTGTGCTTCAGACTCAACTCCAGAG--TGATTGAAATCTACATTGATATATAGGTTAAACCCACAGTGATGGCAACTCTCAGCT----CAGCCAGGGGTACAAGGCCCAAAGATTATGGGGTCCACCTGGGACACGAACTGGAGCTTTATCACCTTCACAATGGAGTACTCACTGCCTATGTCAAGAGCC-AAGCCGACCTGCTGTTCCTCTAATGAGGGAAAGGTGCTCTTGTAAGACTGGTACGAGGCAGACATATCAGGAGGAATTGAGAGAGTCGAATAACCTTCATCCCAAGACTCCT-GGGGGCTTCCTCCTCTTCAGACTCCTGCAGATTCCTGATGAGCCAGGCAGGACAGAGATGACAGAAGATT-AAACCAACAGAGATTAGACAACAAAACCCCCCAGATGATCTGATGGGAGGCAGAATGGAGTGGTCACAGAAACCAAAGG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1817441 470 -   2461138 AAAGCTCACTGACCTACCCCATGCCTGTGCTTCAGACTCAACTCCAGAG--TGATTGAAATCTACACTGATATATAGGTTCAGCTCACAGTGATGACAACTCTCAGCC----CAACCAGGGGCACAAGGCCCAAAGATTATGGGGTCTACATGGGACATGAACTGGAGCTTCATCACCTTCACAATGGAGTACTCACTGCCTATGTCAAGAGCC-AAGCCGACTTGCTGTTCTTCTAATGAGGGAAAGGTGTTCTTGTAAGACTGGTATGAGGCAGACATGTCAGCAGGAATTGAGACAGTCAAATAACCTTCATCCCAGGACTCCTAGGGGGCTTCCTCCTCTTCAGACTCCTGCAGATTCCTGATGAGCCAGGCAGGACAGAGATGACAGAAGATT-AAACCAACAGAGATTAGACAACAAAACCCCCCAGATGATCTGATGGGAGAGAGAATGGAGTGGTCACAGAAACCAAAGG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1016418 471 -   1280666 AAAGCTCACTGACCCACCCCATGCCTGTGCTTCAGACTCAACTCCAGAG--TGATTGAAATCTACACTGACATATAGGTTCAGCCCACAGTGATGGCAACTCTCAGCC----CAACCAGGGGCACAAGGCCCAAAGATTATGGGGTCCACCTGGGACATGAACTGGAGCTTTATCACCTTCACAATGGAGTACTCACTGCCTATGTCAACAGCCAAAGCTGACTTGCTGTTCCTCTAATGAGTGAAAGGTGGTCTTGTAAGACTGGTACAAGGCAGACATGTCAGGAGTAATTGAGAGAGTCGAATAACCTTCATCCCAGGACTCCTAGGGGGCTTCCTCCTCTTCAGACTCCTACAGATTCCTGATGAGCCAGGCAGGACAGAGATGACAGAAGATT-TAACCAACAGAGATTAGACAACAAAACCCCCCAGATGATCTGATGGGAGAGAGAATGGAGTGGTCACAGAAACCAAAGG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             501566 470 -   1325925 AAAGCTCACTGACCCACCCCATGCCTGTGCTTCAGATTTAACTCCAGAG--TGATTGAAATCTACACTGATATATAGGTTCAGCTCACAGTGATGGCAACTCTCAGCC----CAACCAGGGGCACAAGGCCCAAAGATTATGGGGTCTACATGGGACATAAACTGGAGCTTCATCACCTTCACAATGGAGTACTCACTGCCTATGTCAAGAGCC-AAGCCGACTTGCTGTTCTTCTAATGAGGGAAAGGTGCTCTTGTAAGACTGGTACGAGGCAGACATGTCAGCAGGAATTGAGAGAGTCAAATAACCTTCATCCCAGGACTCCTAGGGGGCTTCCTCCTCTTCAGACTCCTGCAGATTCCTGATGAGCCAGGCAGGACAGAGATGACAGAAGATT-AAACCAACAGAGATTAGACAACAAAACCCCCCAGATGATCTGATGGGAGAGAGAATGGAGTGGTCACAGAAACCAAAGG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3734356 468 -   3775709 AAAGCTCATTGAACCACGCCATGCCTGTGCTTCAGACTCGACTCCAGAG--TGATTGAAATCTACATTGATATATAGGTTAAACCCACAGAGATGGCAACTTTCAGCT----CAACCAGGGGCAGAAAGCCCCAAGATTATGGGTTCTACTTGGGACATGAACTGGAGCTTTATCACCTTCACAATGGA-TACTCACTGCCCATGTCAAGAGCC-CAGTCAACTTGTTGTTCCTCTAATGAGTGAAAGGTGCTCCTGTAAGACTGGTATGAGGCAGACATGTCAGGAGGAATTGAGAGAGTCAAATAATCTTCACCCCAGGATTCCTGGGGAGCTTCCTCCTCTTCAGACTCCTGCAGATTCCTGATGAGACAGGCAGGACAGGGATGACAGAAGATT-TCACCAATAGAGATTAGACAAC-AAACCTCCCAGCTGATCTGATGGGAGGCAGAATGCAGTGGTCACAGGAACCAAAGC
i colAng1.NW_012114988v1          I 6 C 0
s calJac3.chr18                     3626362 470 +  47448759 AAAGCTCACTGAACCACCCCATGCCCATGCTTCAGACTGGAATCCGGAG--TGATTGAAATCTGCACTGATGGATAGGCTCAGCCCACAGTGATGACAACTCTCAGCA----CGGCCAGGGGAGCAATACACAAAGACTATGGGGTCTATCTGGGACACAAAGTGGAGCTTTACCACTTTCACAACAGAGTACTCACTGTCTGTGTCATGAGCC-AAGTTGACCTGCTGTTCCTCTAATGAGTGCAAGTTGGTCCTGTAAAGCTCATTGAAGGCAAATGTGCCAGGAGGAATTGAGAGAGTCGAATCATCTTCATCCCAGGACTCCTGGGTGGCTTCCTCCTCCACAGACTCCTGCAGATTCCTGATGAGCCAGGCAGGACAGGGATGACAGAAGATT-AAACCAACACGGATTAGACAACAAAGTCTCCCAGCTGATCTGATGGAAGTCAGAATGGAGTGGTCACAGAAAGCAAAGG
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2803492 469 -   4070394 AAAGCTCACTGACCCACCCCATGTCCATGCTTCAGACTGGAATCCAGAG--TGATTGAAATCTACACTGATTTACAGGTTCAGTCCACAGTGATGACAACTCTCAGCC----CGGCCAGGGGAGCAACGCCCAAAGACTATGGGGTCTATCTGGGACACAAAATGGAGATCTATCGCCTTCACAATGGAGTACTCACTGTCTATGTCACGAGCC-AAGTCGACTTGCTGCTCCTCTAATGAGTGCAAGTTGCTCCTGTAAGGCTCACTGAAGGCAGATGTGCCAGGAGGAACTGAGAGAGTCGAATAACCTTCATCCCAGGACTCCTGGGAAGCTTCCTCCTCAACAGACTCCTGCGGATTCCTGATGAGCCAGGAAGGACAGGG-TGACAGAAGATT-AAACCAACAGAGATTAGACAACAGAGTCTCCCAGCTGATCTGATGGACGTCAGAACGGAGTGGTCCCAGAAAGCAAAGG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             264267 468 +    407294 AAAGCTCACTGA-CCTCCCCATGTCCGTGCTTCAGACTGGAATCCAGAG--TGACTGAAATCTACACTGATGTACAGGTTCAGCCCACAGTGATGACAACTCTCAGCC----CAGCCAGCGGAGCAATGCACAAAGACTATGGGGTCTATCTGGGACACAAAATGGAGCTTCATCGCCTTCACAATGGAGCACTCACTGTCTATGTCACCAGCC-AAGTCGACCTGCTTCTCCTCTAATGAGTGCAAGTTGCTCCTGTAAGGCTCACTGAAGGCAGATGTGCCAGGAGGAACTGAGAGAGCCGAATAACCTTCATCCCAGGACTCCTGGGGTGCTTCCTCCTCCACAGACTCCTGCAGATTCCTGATGAGCCAGGTAGGACAGGG-TGACAGAAGATT-AAACCAACAGAGATTAGACAACAAAGACTCCCAGCTGATCTGATGGAGGTGAGAATGGAGTAGTCCCAGAAAGCAAAGG
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8641492 462 -   9938236 -AGACTCCTTGGCTCATGGGATGTCT-TTCTTCAAACACAATCCCAGAACCTGATCCAAACCAGTATGTGAGTACAGGGTCTACCCAAAGGTATGACATCTCTCAGTCTGGACAGACTGAGGAACA-----TGAAAAATGTGGATTCTATCTGAACAGCCAATTGTGGCTTCATTCCTTTTAGAATTAGAGATTCATTGGCTGCTTCCTGAGCA-GAGCACACTTCCTGTTCATTGAATACCAAGGAGGCACCTCCACAAGGCTGGCAAGAGTCAGACAGAGCACAGTGAACAAACAG-GTCAAAAAACTTTCATCCAGTGAGTCCTGTAGCATTTCCTTCC-----AACTGCTCCA-CTTTCTGATGAGCCAGGTGGGACAG-GATGACAAGGGATTAAAACCAAGAGGGATTAGACACCACAGTGTCCCAGCTGATACTACGGCAGACAAAAGGCAGTAGTTACAGAAAGAAAAGC
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110450863 3462 - 215897965 I
e tarSyr2.KE951269v1                  10631   0 +     19294 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=4640.000000
s hg38.chr1_KI270711v1_random         13079 1 +     42210 -C
s panTro5.chr1                    208004516 1 - 228573443 -C
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208138542 1 - 229774977 -C
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3802329 1 -   8455952 -C
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    264280 1 +    297174 -C
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103753551 1 - 225584828 -C
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211829132 1 + 227556264 -C
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11406430 1 -  14060431 -C
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1817911 1 -   2461138 -C
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1016889 1 -   1280666 -C
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             502036 1 -   1325925 -C
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    110454325 1 - 215897965 -C
i nasLar1.chr1                    I 3462 I 215
s colAng1.NW_012114988v1            3734824 1 -   3775709 -C
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3626832 1 +  47448759 -C
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2803961 1 -   4070394 -C
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             264735 1 +    407294 -C
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8641954 1 -   9938236 A-
i otoGar3.GL873592                C 0 C 0
e tarSyr2.KE951269v1                  10631 0 +     19294 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=147819.000000
s hg38.chr1_KI270711v1_random         13080 16 +     42210 ATTTTTCCTTCAAGAG
s panTro5.chr1                    208004517 16 - 228573443 ATTTTTCCTTCAAGAG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208138543 16 - 229774977 ATTTTTCCTTCAAGAG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3802330 16 -   8455952 ATTTTTCCTTCAAGAG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    264281 16 +    297174 ATCTTTCCTTCAAGAG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103753552 16 - 225584828 ATTTTTCCTTCAAGAG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211829133 16 + 227556264 ATTTTTCCTTCAAGAG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11406431 16 -  14060431 ATTTTTCCTTCAAGAG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1817912 16 -   2461138 ATTTTTCCTTCAAGAG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1016890 16 -   1280666 ATTTTTCCTTCAAGAG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             502037 16 -   1325925 ATTTTTCCTTCAAGAG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3734825 16 -   3775709 ATTTTTCCTTCAACAG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3626833 16 +  47448759 CTTTTTCCTTCAAGAG
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2803962 16 -   4070394 ATTTTTCCTTCAGGAG
i saiBol1.JH378257                C 0 I 4
s cebCap1.NW_016108146v1             264736 16 +    407294 ATTTTTCCTCTAAGAG
i cebCap1.NW_016108146v1          C 0 I 2
s otoGar3.GL873592                  8641955 16 -   9938236 GCAGTCCCCTCAAAAT
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110454326 215 - 215897965 I
e tarSyr2.KE951269v1                  10631  0 +     19294 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=26411.000000
s hg38.chr1_KI270711v1_random         13096 3 +     42210 AAA
s panTro5.chr1                    208004533 3 - 228573443 AAA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208138559 3 - 229774977 AAA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3802346 3 -   8455952 AAA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    264297 3 +    297174 AAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103753568 3 - 225584828 AAA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211829149 3 + 227556264 AAA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11406447 3 -  14060431 AAA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1817928 3 -   2461138 AAA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1016906 3 -   1280666 AGA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             502053 3 -   1325925 AAA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3734841 3 -   3775709 AAA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3626849 3 +  47448759 AAA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2803982 3 -   4070394 AAA
i saiBol1.JH378257                I 4 C 0
s cebCap1.NW_016108146v1             264754 3 +    407294 AAA
i cebCap1.NW_016108146v1          I 2 C 0
s tarSyr2.KE942660v1                 473319 3 -    507792 ATA
i tarSyr2.KE942660v1              I 3955 N 0
s otoGar3.GL873592                  8641971 3 -   9938236 GGG
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110454326 215 - 215897965 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=1632420.000000
s hg38.chr1_KI270711v1_random         13099 197 +     42210 TAAAACTAGC-CTTCTAAATACAGGGTGGAGGGTGACTGCTCT-GGGGACAGAGCAAAAATGGGCAGCATGTGCTCAGTACATTTGCCACAG-ATGAGCCAACTCAGGGCACCCAGACTCTCCCTGTAAACTACCATCATGACTTGCAGCAC----AGAGAACTGACACAGGGCTTCAACTACTTTGCATAAATTGGGTTGAAT
s panTro5.chr1                    208004536 196 - 228573443 TAAAACTATC-CTTCTAAATGCAGGCTGGAGGGTGACTGCTCT-GAGGACCGAACAAAAATGGGCAGCACGTGCTCAGTACATTTGCCACAG-ATCAGCCAATGCAGGGCACCCAGACTCT-CCTGTAAACTACCATCATGACTTGCAGCAC----AGAGAACTAACACAGGGCTTCAACTACTTCGTCTAAATTGGGATGAAT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208138562 196 - 229774977 TAAAACTATC-CTTCTAAATGCAGGCTGGAGGGTGACTGCTCT-GAGGACCGAACAAAAATGGGCAGCACATGCTCAGTACATTTGCCACAG-ATCAGCCAATGCAGGGCACCCAGACTCT-CCTGTAAACTACCATCATGACTTGCAGCAC----AGAGAACTAACACAGGGCTTCAACTACTTCGTCTAAATTGGGATGAAT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3802349 196 -   8455952 TAAAACTATC-CTTCTAAATACAGGGTGGAGGGTGACTGCTCT-G-GGACAGAGCAAAAATGGGCAGCATGTGCTCAGTACATTTGCCACAG-ATGAGCCAACTCAGGGCACCCAGACTCTCCCTGTAAACTACCATCATGACTTGCAGCAC----AGAGAACTGACACAGGGCTTCAACTACTTTGCATAAATTGGGTTGAAT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    264300 197 +    297174 TAAAACTGTC-CTTCTAAATGCAGGGTAGAGGGTGTCTGCTCT-GGGGACAGAGCAAAAATGGGCAGCACGTGCTCAGTACATTTGCCACAG-ATGAGCCAATGTAGGGCACCCAGAATCTCCCTGTAAACTACCATCATGACTTGCAGCAC----AGAGAACTAACACAGGGCTTCAACTACTTTGCATAAATTGGGTTGAAT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103753571 197 - 225584828 TAAAACTATC-CTTCTAAATGCAGGGTGGAGGGTGACTGCTCT-GAGGACAGAGCAAAAATGGGCAGCACGTGCTCAGTATATTTGCCACAG-ATGAGCCAACGCAGGGCACCCAGACTCTCCCTGTAAACTACCGTCATGACTTGCAGCAC----AGAGAACTAACACAGGGCTTCAACTACTTTGCATAAATTGGGTTGAAT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211829152 197 + 227556264 TAAAACTATC-CTTCTAAATGCAGGGTGGAGGATGACTGCTTT-GGGGACCGAACAAAAATGGGCAGCACATGCTCAATATATTTGCCACAG-ATGAGCCAACGCAAGGCACCCAGACTCTCCCTGTAAACTACCATCATGACTTGCAGCAC----AGAGAACTAACACAGGGCTTCAACTACTTTGCATAAATTGGGTTGAAT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11406450 197 -  14060431 TAAAACTATC-CTTCTAAATGCAGGGTGGAGGGTGACTGATTT-GGGGACCGAACAAAAATGGGCAGCACATGCTCAATATATTTGCCACAG-ATGAGCCAACGCAAGGCACCCAGACTCTCCCTGTAAACTACCATCATGACTTGCAGCAC----AGAGAACTAACACAGGGCTTCAACTACTTTGCATAAATTGGGTTGAAT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1817931 197 -   2461138 TAAAACTATC-CTTCTAAATGCAGGGTGGAGGGTGACTGCTCT-GAGGACAGAGCAAAAATGGGCAGCACGTGCTCAGTATATTTGCCACAG-ATGAGCCAAGGCAGGACACCCAGACTCTCCCTGTAAACTACCGTCATGACTTGCAGCAC----AGAGAACTAACACAGGGCTTCAACTACTTTGCATAAATTGGGTTGAAT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1016909 197 -   1280666 TAAAACTATC-CTTCTAAATGGAGGGTGGAGGGTGACTGCTCT-GGGGACAGAGCAAAAATGGGCAGCACGTGCTCAGTATATATGCCACAG-ATGAGCCAACGCAGGGCACCCAGACTCTCCCTGTAAACTACTGTCATGACTTGCAGCAC----AGAGAACTAACACAGGGTTTCAACTACTTTGCATAAATTGGGTTGAAT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             502056 197 -   1325925 TAAAACTATC-CTTCTAAATGCAGGGTGGAGGGTGACTGCTCT-GAGGACAGAGCAAAAATGGGCAGCACGTGCTCAGTATATTTGCCACAG-ATGAGCCAACGCAGGGCACCCAGACTCTCCCTGTAAACTACCGTCATGACTTGCAGCAC----AGAGAACTAACACACGGCTTCAACTACTTTGCATAAATTGGGTTGAAT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3734844 196 -   3775709 TAAAAGTATC-CTTCTAAATGCAGGGCAGAGGGTGACTGCCCT-GGGGAATGACCAAAAATGGGGAGCACGTGCTCAGTACACTTGCCACAG-ATGAGCCAATGCAGGGCACCCAGATTCTCCCTGTAAACTACCGTCACGACTTGCAGCAC----AGAG-ACTAACACAGGATTTCAACGACTTTGCATAAATTGCGTTGAAT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3626852 197 +  47448759 AAAAACTATCGCTTCTAAATGCAGGGTGGAGGGTGACTGCCCT-GGGGACAGAGAACAAATGAGCAGCATGTGCTCAGTGCATGTGCCACAG-ATGAGCCACTGCAGGCCACACAGACTCTCCCTGTAAACTCTCATCACGACTTGCAGCAC-----GAGAACTAACACGGGGCTTCAACCACCTCGCGTAAGTTGTGTTGAAT
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2803985 194 -   4070394 AAAAACTATC-CTTCTAAATGCAGGGCGGAGAGTGACTACCCTGGGGGACAGAGCACAAATGAGCAGCAGGTTCTCAGTGCATTTG-CACAG-ATGAGCCACTGCAGGCCACCCAGA--CTCCCTGTAAACTCTCATCATGAACTGCAGCAC-----GAGAACCAACACGGGGCTTCAACTACCTCGCATCAGTTGTGTTGAAT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             264757 193 +    407294 AAAAACTATC-TTTCTAAATGCAGGGCAGAGGGTGACTACCCC-AGGGACAGAGCACAAATGAGCAGCAGGTGCTCAGTGCATTTG-CACAG-ATGAGCCACTTCAGGCCACCCAGA--CTCCCTGTAAACTCTCACCATGAAATACAGCAC-----GAGAACTAACACGGGGCTTCAACTACCTCGCATAAGTTGTGTTGAAT
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8641974 198 -   9938236 -AAGAGCTGC-CCTCTCCATGCAGCGGGGTGTGTGCCTGC-CT-GGGAGTGGAGTGACAGCCAGCTGCCAGTGTGCAGTGCACCTGTGACAGAACCAGCTGGTGCAGGACGTTCA-ACTCTCCCTGTGTGACACAACCA-GTCTCACAGCACCCACAGGGGCCTAGAGCAAGGTGTCAGCGCTCTCACACAAATTGTGTTGAAT
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110454326 215 - 215897965 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=8952.000000
s hg38.chr1_KI270711v1_random         13296 1 +     42210 T
s panTro5.chr1                    208004732 1 - 228573443 T
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208138758 1 - 229774977 T
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3802545 1 -   8455952 T
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    264497 1 +    297174 T
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103753768 1 - 225584828 T
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211829349 1 + 227556264 T
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11406647 1 -  14060431 T
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1818128 1 -   2461138 T
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1017106 1 -   1280666 T
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             502253 1 -   1325925 T
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    110454541 1 - 215897965 T
i nasLar1.chr1                    I 215 N 0
s colAng1.NW_012114988v1            3735040 1 -   3775709 T
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3627049 1 +  47448759 T
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2804179 1 -   4070394 T
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             264950 1 +    407294 A
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8642172 1 -   9938236 T
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=1829818.000000
s hg38.chr1_KI270711v1_random         13297 225 +     42210 TTACATGCAGCATTCAAGTGAAGAGAGTTCTTGACGCAGTGCAGACA--CAGATCTTGTGTATTAAGGGCCCCATT--TTCCCAATATTTTGATATAA--------------TATATTTACCTTTTCAATTTCTTTTCTTGCAA--AAATACTAGCCAACATACTACCAACGAATAGGAAGAAAGCATATATACA-TCTCTCCCTGGATTTAAACACATGGGAGAGAATAGGCAACACCAAGAAAT
s panTro5.chr1                    208004733 226 - 228573443 TTACATGCAGCATTCAAGTGAACAGAGCTCTTGAGGCAGTGCAGACA--CAGATCTTGTGTATTAAGGGTCCCCTT--TTTACAATATTTTGATATAA--------------TATGTTTATTTTTTCAATTTCTTTGCTTACAC--AAATACTAGCAAACACACTAACAAAAAATAAGCAGAAAGCATTTATACATTCTCTCCCTGGATTTAAACACATGGGAGAGAACAGGTGACACCAAGAAAT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208138759 226 - 229774977 TTACATGCAGCATTCAAGTGAACAGAGCTCTTGAGGCAGTGCAGACA--CAGATCTTGTGTATTAAGGGTCCCCTT--TTTACAATATTTTGATATAA--------------TATGTTTATTTTTTCAATTTCTTTGCTTACAC--AAATACTAGCAAACACACTAACAAAAAATAAGCAGAAAGCATTTATACATTCTCTCCCTGGATTTAAACACATGGGAGAGAACAGGTGACACCAAGAAAT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3802546 220 -   8455952 TTACATGCAGCATTCAAGTGAAGAGAGTTCTTGACGCAGTGCAGACA--CAGATCTTGTGTATTAAGGGCCCCATT--TTCCCAATATTTTGATATA------------------TTTTACTTTTTCAATTTCTTTTCTTGCAA--AAATACTAGCCAACATACTACCAACAAATAGGAAGAAAGCATATATACA--CTCTCCCTGGATTTAAACACATGGGAGAGAATAGGCGACACCAAGAAAT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    264498 225 +    297174 TTACATGCAGCATTCAAGTGAACAGAGCTCTTGAGGCAGTGCAGACA--CAGATCTCACATATTAAGGGCCCCATT--TTTCCAATATTTTGATATAA--------------TATTTTAATTTTTTCCATTTCTTTTCTTGCAC--AAATACTAGCAAACATACTAACAAAAAATGGGCAGATAGCCTATATACA-TCTCTCCCTGGATTTAAACACATGGGAGAGAACAGGCAACACCAAGAAAT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103753769 225 - 225584828 TTGCATGCGGCATTCAAGTGAACAGAGCTCTTGAGGCAGTGCAGACA--CACAGCTTGTGTATTAAGGGCCCCATT--TTTCCAATATTTTGATATAA--------------TATGTTTATTTTTCCAATTTCTTTTCTTGCAC--AAATATTAGCAAACATACTAACAACAAATGGGCAGAAGGCATATATACA-TCTCTCTCTGGATTTAAACACATGGGAGAGAACAGGTGACACCAAGAAAT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211829350 225 + 227556264 TTGCATGCGACATTCAAGTGAACAGAGCTCTTGAGGCAGTGCAGACA--CACAGCTTGTGTATTAAGGGCCCCATT--TTTCCAATATTTTGATATAA--------------TATGTTTATTTTTCCAATTTCTTTTCTTGCAC--AAATACTAGCAAACATACTAACAACAAATAGGCAGAAAGCATATATACA-TCTCTCTCTGGATTTAAACACATGGGAGAGAACAGGCAACACCAAGAAAT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11406648 225 -  14060431 TTGCATGCGACATTCAAGTGAACAGAGCTCTTGAGGCAGTGCAGACA--CACAGCTTGTGTATTAAGGGCCCCATT--TTTCCAATATTTTGATATAA--------------TATGTTTATTTTTCCAATTTCTTTTCTTGCAC--AAATACTAGCAAACATACTAACAACAAATAGGCAGAAAGCATATATACA-TCTCTCTCTGGATTTAAACACATGGGAGAGAACAGGCAACACCAAGAAAT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1818129 225 -   2461138 TTGCATGCGGCATTCAAGTGAACAGAGCTCTTGAGGCAGTGCAGACA--CACAGCTTGTGTATTAAGGGCCCCATT--TTTCCAATATTTTGATATAA--------------TATGTTTATTTTTCCAATTTCTTTTCTTGCAC--AAATACTAGCAAACATACTAACAACAAATGGGCAGAAAGCATATATACA-TCTCTCTCTGGATTTAAACACATGGGAGAGAACAGGCGACACCAAGAAAT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1017107 225 -   1280666 TTGCACGTGGCATTCAAGTGAACAGAGCTCTTGAGGCAGCGCAGACA--CACAGCTTGTGTATTAAGGGCCCCATT--TTTCCAATATTTTGATATAA--------------TATGTTTATTTTTCCAATTTCTTTTCTTGCAC--AAATACTAGCAAACATACTAACAACAAATGGGCAGAAAGCATATATACA-TCTCTCTCTGGATTTAAATACCTGGGAGAGAACAGGTGACACCAAGAAAT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             502254 225 -   1325925 TTGCATGTGACATTCAAGTGAACAGAGCTCTTGAGGCAGTGCAGACA--CACAGCTTGTGTATTAAGGGCCCCATT--TTTCCAATATTTTGATATAA--------------TATGTTTATTTTTCCAATTTCTTTTCTTGCAC--AAATACTAGCAAACATACTAACAACAAATGGGCAGAAAGCATATATACA-TCTCTCTCTGGATTTAAACACATGGGAGAGAACAGGTGACACCAAGAAAT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3735041 226 -   3775709 TTCCACGCAGCATTCAAGTGAACAGAGCTCTTACAGCAGTGCAGACA--CAGATCTTGTGTGCTAAGGGCCCCATT--TTCCCAATATTTTGATATAA--------------TATGTTTATTTTTTCAGTTTCCTTTCTGGCAC--AAATACTGGAAAACATACTAATAAAAAATAAGCAGAAAGCATATGTACATTCTCTCCCTGGATTTAAATGCATGGGAGAGAACAGGTGACACCAAGTAAT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3627050 226 +  47448759 TTACATGCGGCATTCAAGTGGATACAGCTCTTGAGGCACTTCAGACACCCAGATCTGGTGTATTAAGGGCCTCCTT--TTTCCAGTATTTTGATATAA--------------TATGTCTATGTTGTGAATTTCTTCTGTT-CAC--AAATCCTAGCAAACACACTCACAACAAATGGGCAGAACGCATATATGTG-TCTCTCCCTGGGTTTAAACACAGTGGGGAGAACAGGCAAAACCAGGAAAT
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2804180 226 -   4070394 TTCGATGCAGCATTCAAGTGAACAGAGCTCTTGAGGCATTTCAGACACCCAGATCATGGGTATTAAGGGCCACCAT--TTTTCAGTATTTTGATAATA--------------TATGTATATCTTTTGAATTTCTTCTCTT-CAC--AAATCCCAGAAAACATGGTAACAACAAATACGCAGAAAGCGTGTATGTG-TCTCTCCCTGGACCTAAACACATGGGAGAGAACAGGCGACACCAGGAAAT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             264951 226 +    407294 TTACATGTGGCATTCAAGTGAAAAGAGCTCTTGAGGCATTTCAGACACCCAGATCTTGTGTATTAAGGGCCTCCTT--TTTCCACTATTTTGATATAA--------------TGTGTCTATGTTTTGAATTTCTTCTCTT-CAC--AAATCCTAGCAAACATGCTCACAACAAATGTGCAGAAAGCATATATGTG-TCTCTCCCTGGATTTAAACACATGGGAGAAAACAGGAGAAACCCGGAAAT
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8642173 243 -   9938236 TCACATGCCACATCCAAA-AAACAGAACTCTTGACACATTCCAAATTCCCAGATCTTATGTTTTTAGTGTGTCATTTATTTTTAATATTTTGACAGGAAAGGGGTTTTTTTTTTTGTTTGT-TTTCATATTCTTTCTCTAGCAATGAAATATTTGCCCATATACTGACGCCAAAGAGAAAGAAAACAAATGGGCA-TCTCACCCTGGATTTCAACACATGGGAGAAAACAAGTGATATCAGGAAAC
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=67392.000000
s hg38.chr1_KI270711v1_random         13522 9 +     42210 CCCTGTTTG
s panTro5.chr1                    208004959 9 - 228573443 CCCTGTTTG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208138985 9 - 229774977 CCCTGTTTG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3802766 9 -   8455952 CCCTGTTTG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    264723 9 +    297174 CCCTGTTTG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103753994 9 - 225584828 CCCTGTTTG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211829575 9 + 227556264 CCCTGTTTG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11406873 9 -  14060431 CCCTGTTTG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1818354 9 -   2461138 CCCTGTTTG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1017332 9 -   1280666 CCCTGTTTG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             502479 9 -   1325925 CCCTGTTTG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3735267 9 -   3775709 CCCTGTTTG
i colAng1.NW_012114988v1          C 0 C 0
s cebCap1.NW_016108146v1             265177 9 +    407294 CCCTGTTTG
i cebCap1.NW_016108146v1          C 0 I 3
e otoGar3.GL873592                  8642416 0 -   9938236 C
e calJac3.chr18                     3627276 0 +  47448759 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e saiBol1.JH378257                  2804406 0 -   4070394 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=2711873.000000
s hg38.chr1_KI270711v1_random         13531 515 +     42210 agggtctggagtggacttccagcaaactccaacagacctgaagctgagggacctgattgttagaaggaaaactaacacacagaaaggaatagcatcaacatcaacaaaaaagacatccaccccaaaaccccatctgtaggtcgccatcatcaaagaccaagggtagataaaaccacaaaggtggggagaaaccagagcacaaaagctgaaaattccaaaaacctga-catccc-ttctcctccaaaggatcacagctcctcgccagcaatggaacaaagcaggatggagaatgactttgatgagctgacagaagtaggcttcagaaagtcggtaataacaaacttctctgagctaaaggaggatgtgcgaactcatcgcaaggaagctaaaaaccttgaaaaaagattagacgaatggccaaccagaatgaacagtgtagagaagaccttaaatgacctgatggagctgaaaaccatggcacgagaactacgtgatgcatgcacaagcttcagtagc
s panTro5.chr1                    208004968 510 - 228573443 aaggtctggagtggaactccagcaaactccatcagacctgcagctgagggacctcactgttaaaaggaaaactaacaaacagaaagga-----atcaacgtcaac-aaaaggacatccacaccaaaaccccatctgtaggtcaccagcatcaaagaccaaaggtagataaaaccacgaagatgtggacaaactggagcagaaaagctgaaaattctaaaaaccagagcgccccattctcctccaaaggatcacagctcctcaccagcaatggaacaaagcaggacggagaataactttgatgagctgacagaagtaggcttcag-aagtcggtaataacaaacttctccgagctaaaggaggatgtgcaaacccatcacaaggaagctaaaaaccttgaacaaagattggacgaatggctaactagaataaacaatgtagaggagacctgaaatgacctgatggagctgaaaaccatggcacgagaactacgtgacacatgcacaagcttcagtagc
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208138994 510 - 229774977 aaggtctggagtggaactccagcaaactccatcagacctgcagctgagggacctcactgttaaaaggaaaactaacaaacagaaagga-----atcaacgtcaac-aaaaggacatccacaccaaaaccccatctgtaggtcaccagcatcaaagaccaaaggtagataaaaccatgaagatgtggacaaactggagcagaaaagctgaaaattctaaaaaccagagcgccccattctcctccaaaggatcacagctcctcaccagcaatggaacaaagcaggacggagaataactttgatgagctgacagaagtaggcttcag-aagtcggtaataacaaacttctccgagctaaaggaggatgtgcaaacccatcacaaggaagctaaaaaccttgaacaaagattggacgaatggctaactagaataaacaatgtagaggagacctgaaatgacctgatggagctgaaaaccatggcacgagaactacgtgacacatgcacaagcttcagtagc
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3802775 513 -   8455952 agggtctggagtggacttccagcaaactccaacagacctgaagctgagggacctgactgttagaaggaaaactaacacacagaaaggaatagcatcaacatcaac-aaaaagacatccaccccaaaaccccatctgtaggtcgccatcatcaaagaccaagggtagataaaaccacaaaggtgggga-aaaccagagcacaaaagctgaaaattccaaaaacctga-catccc-ttctcctccaaaggatcgcagctcctcgccagcaatggaacaaagcaggatggagaatgactttgatgagctgacagaagtaggcttcagaaagtcggtaataacaaacttctctgagctaaaggaggatgtgcgaactcatcacaaggaagctaaaaaccttgaaaaaagattagacgaatggctaaccagaatgaacagtgtagagaagaccttaaatgacctgatggagctgaaaaccatggcacgagaactacgtgatgcatgcacaagcttcagtagc
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    264732 516 +    297174 agtgtctggagtggacttccagcaaactccaacagacctgcagctgagggacctgactgttagaaggaaaactaacaaacagaaaggaacagtatcaacatcaacaaaaagaacatccacaccaaaaccccatctgtaggccaccatcatcaaacaccaaaggtagataaaatgacaaagatcaggagaaaccagagcagaaaagctgaaaattctgaaaaccagagcaccac-ttctcctccaaaggattgcaactccttttcagcaatggaacaaagcaggatggagaataactttgacgagttgacagaagtaggcttcaaaaagacagtaataacaaacctctctgagctaaaggaggatgtgcaaacccattgcaaggtaactaaaaaccttgaaaaaaaattagatgaatggctaactagaataaacagtgtagagaagaccttaaatgacctgatggagctgaaaaccatggcaggagaactatgtgatgcatgcacaggcttcagtagc
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103754003 516 - 225584828 agggtctggagtggacctccagcaaactccaacagacctgcagctgagggacctgactgttagaaggaaaactaacaaacagaaaggaaaagcatccacatcaacaaaaaggacgtccacaccaaaaccccatctgtaggtcaccaacatcaaagaccaaaggtagataaaaccacaaagatggggagaaaccagagcagaaaagctgaaaattctaaaaaccagagcgcccc-ttctcctccaaaggatcacagctccttgccagcaacggaacaaagcaggatggagaatgactttgacgaggtgacagaagtaggcttcagaaagtcggtaataacgaacttctctgagctaaaggaggatgtgcaaaaccatcacaaggaagctaaaaaccttgaaaaaagaatagatgaatagctaactagaataaacagtgtagagaagaccttaaatgacctaatgaagctgaaaaccatggcacgagaactacgtgacatatgcacaagcttcagtagc
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211829584 516 + 227556264 agggtctggagtggacttccagcaaactccaacagacctgcagctgagggacccaactgttagaaggaaaactaacaaacagaaagggaaagcatccacatccacaaaaaggacatccacaccaaaaccccatctgtaggttaccatcatcaaagatcaaaggtagataaaagcacaaagatggggagaaaccagagcagaaaagcagaaaattctaaaaaccagagtgcccc-ttctcctccaaaggatcacagctcctcgccagcaacggaacaaagcaggatggagaatgactttgacgagttgacaaaagtaggcttcagaaagtcagtaataacaaacttctctgagctaaaggaggatgtgtgaatccattgcaaggaagctaaaaaccttgaaaaaagaatagacgaatggctaactagggtaaacagtgtagagaagaccttaaatgacctgatggagctgaaaaccatggcacaagaactacctgacgcatgcacaagcttcagtagc
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11406882 506 -  14060431 agggtctggagtggacttccagcaaactccaacagacctgcagctgagggacctcactgttaacaagaaaactaacaaacagaaagggaaagcatccacatccacaaaaaggacatccacaccaaaaccccatctgtaggttaccatcatcaaagatc----------aaaagcacaaagatggggagaaaccagagcagaaaagcagaaaattctaaaaaccagagtgcccc-ttctcctccaaaggatcacagctcctcgccagcaacggaacaaagcaggatggagaatgactttgacaagttgacaaaagtaggcttcagaaagtcagtaataacaaacttctctgagctaaaggaggatgtgtgaatccattgcaaggaagctaaaaaccttgaaaaaagaatagacgaatggctaactagggtaaacagtgtagagaagaccttaaatgacctgatggagctgaaaaccatggcacaagaactacctgacgcatgcacaagcttcagtagc
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1818363 516 -   2461138 aggatctggagtgaacttccagcaaactccaacagacctgcagctgagggacctgactgttagaaggaaaactaacaaacagaaagggaaagcatccacacccacaaaaaggacatccacaccaaaaccccatctgtaggttaccatcatcaaagaccaaaggtagataaaaccacaaagatgcggagaaaccagagcagaaaagctgaaaattctaaaaaccagagcgcccc-ttctcctccaaaggatcacagctccttgccagcaacggaacaaagcaggatggagaatgactttgacgaggtgacagaagtaggcttcagaaagtcggtaataacgaacttctctgagctaaaggaggatgtgcaaaaccatcacaaggaagctaaaaaccttgaaaaaagaatagatgaatagctaactagaataaacagtgtagagaagaccttaaatgacctgatgaagctgaaaaccatggcacgagaactacgtgacatatgcacaagcttcagtagc
i cerAty1.NW_012001440v1          C 0 I 7
s chlSab2.chr20_KE148050v1_random   1017341 516 -   1280666 agggtctggagtggactttcagcaaactccaaaagacctgcagctaagggacccgattgttagaaagaaaactaacaaacagaaaggaaaagcatccgcatcaacaaaaaggacgtccacaccaaaaccccatctgtaggtcaccatcatcaaagaccaaaagtagataaaaccaaaaagatggggagaaaccagagcagaaaagctgaaaattctaaaaaccagagcgctcc-ttctcctccaaaggatcacagctccttgccagcaatggaacaaagcaggatggagaatgactttgacgaggtgacagaagtagacttcagaaagtcagtaataacaaacttctctgagctaaaggaggatgtgcaaaaccatcgcaaggaagctaaaaaccttgaaaaaagaatagatgaatggctaactagaataaacagtgtagagaagacctaaaatgacccaatggagctgaaaaccatggcacgagaactacgtgacatatgcacaagcttcagtagc
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             502488 516 -   1325925 agggtctggagtggacttccagcaaactccaacagacctgcagctgagggacctgactgttagaaggaaaactaacaaacagaaaggaaaagcatccacatcaacaaaaaggacgtccacaccaaaaccccatctgtaggtcaccaacatcaaagaccaaaggtagataaaaccacaaagatggggagaaaccagagcagaaaagctgaaaattctaaaaaccagagcgcccc-ttctcctccaaaggatcacagctccttgccagcaacggaacaaagcaggatggagaatgactttgacgaggtgacagaagtaggcttcagaaagtcggtaaaaatgaacttctctgagctaaaggaggatgtgcaaaaccatcacaaggaagctaaaaaccttgaaaaaagaatagatgaatagctaactagaataaacagtgtagagaagaccttaaatgacctgatgaagctgaaaaccatggcacgagaactacatgacatatccacaagcttcagtagc
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3735276 513 -   3775709 agggtctggagtggacctccagcaaactccaccagacctgcagctgagggacctcactgttaacaagaaaactaacaaacagaaaggaatagcatccatttcaacacaaaggacgtccacaccaaaaccccatctgtaggtcaccagcatca---accaaaaggatataaaaccacaaagatgtggagaaaccggagcggtaaagctgaaaattttaaaaatcacagtgcccc-ttctcctccaaagggtcagagatcctcgccaccaatggaacaaaaaaggacagaaaatgactttgaagagttgactgaagtaggcttcagaaagttggtaataacaaacttctcagagttaaaggaggatttgcaaaaatattgcaaggaagctaaaaaccttgaaaaaagattagacgaatggctaactagaataaacagtgtagagaagacctgaaatgacctgatggagctgaaaaccatggcatgagaactacatgacacatgcacaagcttcagcaga
i colAng1.NW_012114988v1          C 0 C 0
e otoGar3.GL873592                  8642416   0 -   9938236 C
e calJac3.chr18                     3627276   0 +  47448759 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e cebCap1.NW_016108146v1             265186   3 +    407294 I
e saiBol1.JH378257                  2804406   0 -   4070394 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=91041.000000
s hg38.chr1_KI270711v1_random         14046 24 +     42210 caattcgatcaagtgcaagaaacg
s panTro5.chr1                    208005478 24 - 228573443 cgattcgatcaagtggaagaaagg
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208139504 24 - 229774977 cgattcgatcaagtggaagaaagg
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3803288 24 -   8455952 caattcgatcaagtgcaagaaacg
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    265248 24 +    297174 caattagatgaagtggaagaaagg
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103754519 24 - 225584828 tgattcgatcaagtggaaaaacga
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211830100 24 + 227556264 caattctatcaagtggaagaaagg
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11407388 24 -  14060431 caattctatcaagtggaagaaagg
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1017857 24 -   1280666 tgattcgatcaagtggaaaaacgg
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             503004 24 -   1325925 tgattcgatcaagtggaaaaacga
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3735789 24 -   3775709 tgattcgatcaagtggaagaaagg
i colAng1.NW_012114988v1          C 0 C 0
e otoGar3.GL873592                  8642416  0 -   9938236 C
e calJac3.chr18                     3627276  0 +  47448759 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e cerAty1.NW_012001440v1            1818879  7 -   2461138 I
e cebCap1.NW_016108146v1             265186  3 +    407294 I
e saiBol1.JH378257                  2804406  0 -   4070394 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=1337434.000000
s hg38.chr1_KI270711v1_random         14070 259 +     42210 gta-tcagtgattcaagatcaaattagtgaaatgaagcgagaagagaagtttagag----aaaaaagagtaaaaagaaatgaac-aagcctccaataaatatgggactatgtggaaagaccaaatctacgtttgattggtgca-ctgaaagtgacggggagaatggaaccaagctgggaaacattcttcaggatattatccaggaggacttccccaaccttgtaaggaaggccaacattcaaattcaggaaacacagagaacacca
s panTro5.chr1                    208005502 262 - 228573443 gtatttagtgattgaagatcaaattaatgaaatgaagtgagaagagcagtttagag----aaaaaagagtaaaaagaaatgaacaaagcctccaataaatatgggactatgtgaaaagaccaaatctacatttgattggtgtacctgaaagtgacggggagaatggaaccaagttggaaaacactcttcaggatattatccaggagaacttccccaacctagcaaagcaggccaacattcaaattcaggaaatacagagaacacca
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208139528 261 - 229774977 gta-ttagtgattgaagatcaaattaatgaaatgaagtgagaagagcagtttagag----aaaaaagagtaaaaagaaatgaacaaagcctccaataaatatgggactatgtgaaaagaccaaatctacatttgattggtgtacctgaaagtgacggggagaatggaaccaagttggaaaacactcttcaggatattatccaggagaacttccccaacctagcaaagcaggccaacattcaaattcaggaaatacagagaacacca
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3803312 239 -   8455952 gta-tcagtgattcaagatcaaattagtgaaatgaagcgagaagagaagtttagag----aaaaaagagtaaaaagaaatgaac-aagcctccaataaatatgggactatgtggaaagaccaaatctacgtttgattggtgta-ctgaaagtgacggggagaatggaaccaagctgggaaacattcttcaggatattatccaggaggacttccccaacct--------------------aaattcaggaaacacagagaacacca
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    265272 262 +    297174 gca-tcagtgattgaagatcaaattaatgaaatgaagtgagaagagaattttagag---aaaaaaagagtaaaaagaaatgaacaaagcctccaagaaatatgggactatgtgaaaaggccaaatctacatttgattggtgtacctgaaagtgacggggagaatggaaccaagctggaaaacacttttcggaatattatccagcagaacttccccaacctagcaaggcaggccaacattcaaattccggaaatacagagaacacca
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103754543 264 - 225584828 ata-tctgtgattgaagatcaaatgaatgaaatgaagcaaaaagagaagtctagagg-gaaaaaaacagtaaaaagaaatgaacaaagcctccaagaaatatgggattatgtgaaaagaccaaacctatatttgatcggtgtacctgaaagtgacggggagaatgtaaccaagctggaaaacactcttcaggatattatccaggagaacttccccaacctagtaaggcaggccaacattcaaattcaggaaatacagagaacacca
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211830124 261 + 227556264 gta-tcagtgattgaagatcaaattaaggaaatgaagcaagaagagaaggttagag----aaaaaagagtaaaaagaaatgaacaaagcctccaacaaatatgggactatgtgaaaagaccaaatctacatttggttggtatacctgaaagtgacagggagaatggaaccaagctggaaaacactctacaggatattatccaggagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaataaagagaacacca
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11407412 261 -  14060431 gta-tcagtgattgaagatcaaattaaggaaatgaagcaagaagagaaggttagag----aaaaaagagtaaaaagaaatgaacaaagcctccaacaaatatgggactatgtgaaaagaccaaatctacatttggttggtatacctgaaagtgacagggagaatggaaccaagctggaaaacactctacaggatattatccaggagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaataaagagaacacca
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1818886 265 -   2461138 gta-tctgtgattgaagatcaaatgaatgaaatgaagcaaaaagagaagtctagaggaaaaaaaaacagtaaaaagaaatgaacaaagcctccaagaaatatgggattatgtgaaaagaccaaacctatatttgatcggtgtacctgaaagtgacggggagaatgtaaccaagctggaaaacactcttcaggatattatccaggagaacttccccaacctagtaaggcaggccaacattcaaattcaggaaatacagagaacacca
i cerAty1.NW_012001440v1          I 7 C 0
s chlSab2.chr20_KE148050v1_random   1017881 250 -   1280666 gta-tctgtgattgaagatcaaatgaatgaaatgaagcaaaaagagaagtttagaggaaaaaaaag-agtaaaaagaaatgaacaaagcctccaagaaatatgggattatgtgaaaagaccaaacctacatttgattggtatacgtgaaagtgacagggagaatggaaccaagttggaaaacac--------------tccaggagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaatacagagaacacta
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             503028 265 -   1325925 ata-tctgtgattgaagatcaaatgaatgaaatgaagcaaaaagagaagtctagaggaaaaaaaaacagtaaaaagaaatgaacaaagcctccaagaaatatgggattatgtgaaaagaccaaacctatatttgatcggtgtacctgaaagtgacggggagaatgtaaccaagctggaaaacactcttcaggatattatccaggagaacttccccaacctagtaaggcaggccaacattcaaattcaggaaatacagagaacacca
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3735813 260 -   3775709 gta-tcagtgactgaagatcaaattgacgaaatgaagtgagaagaaaagtttagag----aaaaaagagtaaaaagaaacaaacaaagctgccaagaaatatgggactatgtgaaaaga-caaatctatgtttgattggtgtacctgaaagtgatggggagaatggaaccaagctggaaaacaatcttcaggatattatccaggcgaacttccccaacctagcaaggcaggccaacattcaaattcaggaaatacagagaacacca
i colAng1.NW_012114988v1          C 0 I 1574
e otoGar3.GL873592                  8642416   0 -   9938236 C
e calJac3.chr18                     3627276   0 +  47448759 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e cebCap1.NW_016108146v1             265186   3 +    407294 I
e saiBol1.JH378257                  2804406   0 -   4070394 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=773590.000000
s hg38.chr1_KI270711v1_random         14329 188 +     42210 taaagatactcctcgagaagagcaaccccaaaacacataattgtcagattcaccaaggttgaaatgaaggaaaaaatgctaagtgcagccagagagaaaggtcggattacccacaaagggaagcccatcagactagcagcagatctcttggcacaaaccctacaagccagaagagagtgggag-caata
s panTro5.chr1                    208005764 188 - 228573443 caaagatactcttcgagaagagcaactccaagacacataattgtcagattcaccaaggttgaaa-gaaggaaaaaatgttaggggcagccagagagaatggtcgagttacccactaagggaagcccaccagactaacagtggatctctctgcagaaaccctacaagccagaagagagtgggggccaata
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208139789 188 - 229774977 caaagatactcttcgagaagagcaactccaagacacataattgtcagattcaccaaggttgaaa-gaaggaaaaaatgttaggggcagccagagagaatggtcgagttacccactaagggaagcccaccagactaacagtggatctctctgcagaaaccctacaagccagaagagagtgggggccaata
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3803551 178 -   8455952 taaagatactcctcgagaagagcaaccccaa-acacataattgtcagattcaccaaggttgaaatgaaggaaaaaatgtaag--gcagccagagagaaaggtcggatta-ccacaaaggaag--ccatcagactagca-cagatctct-tgcacaaa-cctacaagccagaagagagtggag--caata
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    265534 188 +    297174 caaagatactcctcgagaaaagcaactccaagacacataattgtcagattcaccaaagttgaaatgcaggaaaaaatgttaagggcagccagagagaaaggtcgggttacccacaaagg-aagcccatcagactaacagcagatttcttggcagaaaccctacaagctacaagagagtgggggccaata
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103754807 189 - 225584828 caaagatactcctcgagaaaagcaaccccaagaatcataattgtcagattcaccaaggttgagatgaaggaaaaaatgctaagggcagccagagagaaaggctgggttacccacaaagggaagcccatcagactaacagcaaatctcttggtagaaatcctacaagccagaagagagtgggggccaata
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211830385 189 + 227556264 caaagatactcctcgagaagagcaacctcaagatacataattgtcagattcaccaaggttgaaatgaaggaaaaactgctaagggcagccagagagtaaggtccggttacccacaaagggaagcctatcagactaacagtggatctctcggcagaaaccctacaagccagaagagagtggagaccaata
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11407673 189 -  14060431 caaagatactcctcgagaagagcaacctcaagatacataattgtcagattcaccaaggttgaaatgaaggaaaaactgctaagggcagccagagagtaaggtccagttacctacaaagggaagcctatcagactaacagtggatctctcggcagaaaccctacaagccagaagagagtggagaccaata
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1819151 188 -   2461138 caaagatacccctcgagaaaagcaactccaagacacataattgtcagattcaccaaggttgagatgaaggaaaaaatgctaagggcagccagagagaaaggctgggttacccacaaa-ggaagcccatcagactaacagcaaatctctcggtagaaatcctacaagccagaagacagtgggggccaata
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1018131 187 -   1280666 caaagatactcctcgagaagagcaatcccaagaatcaaaattgtcagattcaccaaggttgaaatgaaggaaaaaatgctaaaggcagcc--agagaaaggctgggttacccacaaagggaagtccatcagactaacagcaaatctctcggcagaaaacctacaagccagaagagagtggtggccaata
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             503293 189 -   1325925 caaagatactcctcgagaaaagcaaccccaagaatcataattgtcagattcaccaaggttgagatgaaggaaaaaatgctaagggcagccagagagaaaggctgggttacccacaaagggaagcccatcagactaacagcaaatctctcggtagaaatcctacaagccagaagagagtgggggccaata
i manLeu1.NW_012105087v1          C 0 C 0
e otoGar3.GL873592                  8642416   0 -   9938236 C
e calJac3.chr18                     3627276   0 +  47448759 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e colAng1.NW_012114988v1            3736073 1574 -   3775709 I
e cebCap1.NW_016108146v1             265186   3 +    407294 I
e saiBol1.JH378257                  2804406   0 -   4070394 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=5183.000000
s hg38.chr1_KI270711v1_random         14517 10 +     42210 ttcaacattc
s panTro5.chr1                    208005952 10 - 228573443 ttcgacattc
i panTro5.chr1                    C 0 I 6
s panPan2.chr1                    208139977 10 - 229774977 ttcgacattc
i panPan2.chr1                    C 0 I 6
s gorGor5.CYUI01015145v1            3803729  9 -   8455952 ttcaacttc-
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211830574 10 + 227556264 ttcaacattc
i macFas5.chr1                    C 0 C 0
e otoGar3.GL873592                  8642416  0 -   9938236 C
e calJac3.chr18                     3627276  0 +  47448759 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e colAng1.NW_012114988v1            3736073 1574 -   3775709 I
e manLeu1.NW_012105087v1             503482  0 -   1325925 C
e cerAty1.NW_012001440v1            1819339  0 -   2461138 C
e cebCap1.NW_016108146v1             265186  3 +    407294 I
e saiBol1.JH378257                  2804406  0 -   4070394 C
e rheMac8.chr1                    103754996  0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1018318  0 -   1280666 C
e macNem1.NW_012017688v1           11407862  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    265722  0 +    297174 C

a score=273.000000
s hg38.chr1_KI270711v1_random         14527 1 +     42210 t
s gorGor5.CYUI01015145v1            3803738 1 -   8455952 t
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211830584 1 + 227556264 t
i macFas5.chr1                    C 0 C 0
e otoGar3.GL873592                  8642416 0 -   9938236 C
e calJac3.chr18                     3627276 0 +  47448759 C
e panPan2.chr1                    208139987 6 - 229774977 I
e panTro5.chr1                    208005962 6 - 228573443 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e colAng1.NW_012114988v1            3736073 1574 -   3775709 I
e manLeu1.NW_012105087v1             503482 0 -   1325925 C
e cerAty1.NW_012001440v1            1819339 0 -   2461138 C
e cebCap1.NW_016108146v1             265186 3 +    407294 I
e saiBol1.JH378257                  2804406 0 -   4070394 C
e rheMac8.chr1                    103754996 0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1018318 0 -   1280666 C
e macNem1.NW_012017688v1           11407862 0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    265722 0 +    297174 C

a score=36259.000000
s hg38.chr1_KI270711v1_random         14528 719 +     42210 ttttttttttccatatgtatagttttcctttattattttttgtgtgtatgtatatatatgtatatatattttttaatactttaagtcttagggtacatgtgcacaacgtgcaggttagttacatatgtatacatgtccacattggtgtgcttcacccattaactcatcatttaacattaggtatatctcctaatgctacccctcctccctccccacaccctacaacaggccccagtgtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctgtgagtaagaacatgcggtacttggctttttgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgcccctacaaaggacatgaactcatcattttttatagctgcatagtattccatggtgtacacgtgccacattttcttaatccagtctatcattgctggatatttggcttggttccaagtctttgctattgtgaatagtgccgcaataaacatatgtgtgcatgtgtctttacagcagcatgatttataatcctttgggtatacacccagtaatgggatggctgggtcaaatgctatttctagttctagatccctgaggaattgccacactgccttccacaatcgttgaactagtttacactcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcatc
s gorGor5.CYUI01015145v1            3803739 633 -   8455952 tttttttttt-------tatagttttc-tttatttttttttttttttat-------------tat-tattttttaatacttta-gtcttagg-tacatgtgca-aacgtgcaggttagttacatatgtatacatgtccacattg-tgtgcttcacc-atta-ctcatcatt-aacattag-tatatctcctaatgctacccctccccccccc----accctacaacag--cccagtg-gtgatgttccctt--ctgtgtc-atgtgttctcattgttca--ttccac-tgtgagtaagaacatgcggtatttggttttttgtccttgcaatagtttgctgagaatgatggtt--cagcttcatccatgccc-tacaa-ggacatgaactcatcattttt-atagctgcata-tattc-atggtgtatatgtgcca-attttcttaatccagtctatcattgctggatatttg-cttggttc-aagtctttgctattgtgaatagtgcc----taaacatatgtgtgcatgtgtctttacagcag----atttt--atcctttgg-tatacacc--ataatgg-atg-ctgggtcaaatg-tatttctagttctagatcc-tgaggaattgccaca-tgc-ttccacaatcgt-gaactagtt-acagtccca--aacagtgtaaa---gtttctatttctcca-------tccttcagc
i gorGor5.CYUI01015145v1          C 0 C 0
e otoGar3.GL873592                  8642416   0 -   9938236 C
e calJac3.chr18                     3627276   0 +  47448759 C
e panPan2.chr1                    208139987   6 - 229774977 I
e panTro5.chr1                    208005962   6 - 228573443 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e colAng1.NW_012114988v1            3736073 1574 -   3775709 I
e manLeu1.NW_012105087v1             503482   0 -   1325925 C
e cerAty1.NW_012001440v1            1819339   0 -   2461138 C
e macFas5.chr1                    211830585   0 + 227556264 C
e cebCap1.NW_016108146v1             265186   3 +    407294 I
e saiBol1.JH378257                  2804406   0 -   4070394 C
e rheMac8.chr1                    103754996   0 - 225584828 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1018318   0 -   1280666 C
e macNem1.NW_012017688v1           11407862   0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    265722   0 +    297174 C

a score=28784.000000
s hg38.chr1_KI270711v1_random         15247 11 +     42210 ttcaacattct
s gorGor5.CYUI01015145v1            3804372 11 -   8455952 ttcaacattct
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    265722 11 +    297174 ttcaacattct
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103754996 11 - 225584828 ttcaacattct
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11407862 11 -  14060431 ttcaacattct
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1819339 11 -   2461138 ttcaacattct
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1018318 11 -   1280666 ttcaacattct
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             503482 11 -   1325925 ttcaacattct
i manLeu1.NW_012105087v1          C 0 C 0
e otoGar3.GL873592                  8642416  0 -   9938236 C
e calJac3.chr18                     3627276  0 +  47448759 C
e panPan2.chr1                    208139987  6 - 229774977 I
e panTro5.chr1                    208005962  6 - 228573443 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e colAng1.NW_012114988v1            3736073 1574 -   3775709 I
e macFas5.chr1                    211830585  0 + 227556264 C
e cebCap1.NW_016108146v1             265186  3 +    407294 I
e saiBol1.JH378257                  2804406  0 -   4070394 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=12661.000000
s hg38.chr1_KI270711v1_random         15258 5 +     42210 taaag
s gorGor5.CYUI01015145v1            3804383 4 -   8455952 -aaag
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    265733 5 +    297174 gaaag
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103755007 5 - 225584828 taaag
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211830585 5 + 227556264 taaag
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11407873 5 -  14060431 taaag
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1819350 5 -   2461138 taaag
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1018329 5 -   1280666 taaag
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             503493 5 -   1325925 tcaag
i manLeu1.NW_012105087v1          C 0 C 0
e otoGar3.GL873592                  8642416 0 -   9938236 C
e calJac3.chr18                     3627276 0 +  47448759 C
e panPan2.chr1                    208139987 6 - 229774977 I
e panTro5.chr1                    208005962 6 - 228573443 I
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e colAng1.NW_012114988v1            3736073 1574 -   3775709 I
e cebCap1.NW_016108146v1             265186 3 +    407294 I
e saiBol1.JH378257                  2804406 0 -   4070394 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=4812104.000000
s hg38.chr1_KI270711v1_random         15263 1096 +     42210 aaaagaattttcaatccagaatttcatatccagccaaacaaagcttcataagtgaaggagaaataaa-tcctttacagagaagcaaatgctgagagattttgtcaccaccaggcctgccttacaagagctcctaaaggaaacactaaacatggaaaggaacaaccggtaccagcca----ctgcaaaaacatgccaaactgtaaagaccattgacgc----taggaagaaactgcatcaactaacgggcgaaataaccagctaacatcataacgacaggctcaaattcacaca-taacaatattaaccttaaatgtaaatgggctaaatgccccagttaaaaaacacagaatggcaaattggacaaagagtca--------------------------agacccatcagtgtgctgtactcaggaaacccatctcacatgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaagc-------aaaaaaatgcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaggagacaaagaaggccactacataatggtaaagggatcaattcaacaagaagagttaactatc----ctaaatatatatgcaccctatacgggagcacccagattcataaagcaagtcctgagagacctacaaag-agatttagactcc-acac---aatcataatgggagactttaacaccccactgtcaatattagacagatcaatgagacagaagctttacaaggatatccaggacttgaactcagctctccaccaagcagacctaaaagacatctacagaactctcca-ccccaaatcaacagaatatacattcttctcagcaccacatcacacttattccaaaattgaccacatagttggaggtaaagcactc-atcagcaaatgtaaaagaatggaaaccacaacaaactgtc----agaccacagtgcaatcaaattagaactcaggattaagaaactcactcaaaaccgcacaactacatggaaactgaacaacctgctcctgaatgactactgggaaaataacaaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaa
s panTro5.chr1                    208005968 1104 - 228573443 aaaagaattttcaacccagaatttcatactcagccaaactaagcttcaaaagtgaaggagaaataaaatcctttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccttgcaagagctcctgaaggaagcactaaacatggaaaggaacaaccagtaccagccagccactgcaaaaacgtgccaaattgtaaagaccatcgatgc----taggaagaaagtgcatcaactaacaggcaaaataaccagctcacatcatcatgacaggatcaaattcacaca-taacaatagtaacctgaaatgtaaataggctaaatgccccaataaaaagatacagactggcaaattggataaggagtca--------------------------agatccatcagtgtgctgt-tgcaggagacccatctcacatgcagagacacacataggctcaaaataaagggatgcaggaagatctaccaagcaaatggagagc-------aaaaaaaagcaggggttgcaatcctagtctttgataaaacagactttaaaccaagaaagatcaaaagagacaaagaaggccattacataatcgcaaagggatcaattcaacatgaaaagctaactatc----ctaaatgtacatatatccaatacaggagcacccagattcataaagcaagtcctgagagacctaaaaag-agacttagactcccatac---aataatcatgggggactttaacaccccactgtcaatatttgacagatcaatgagacagaaggttcacaaggatatccaggacttgaactcagctctgcaccaagcagacctaatagacatctac-gaactctcca-cccctaaccaacagaatattcattcttctcagcatcacatcacacttattccaaaattggccatatagttggaggtaaagcactc-ctcagcaaatgtaaaagaacagaaatcacaacaaactgtctctcagaccacagtgctatcaaattagagctcaggattaagaaactcactcaaaactgcacaactacatggaaactgaacaacctgctcctgaatgactactgggtaaataacaaaatgaaggcagaaattaagatgttctttgaaaccaatgagaacaa
i panTro5.chr1                    I 6 C 0
s panPan2.chr1                    208139993 1101 - 229774977 aaaagaattttcaacccagaatttcatactcagccaaactaagcttcaaaagtgaaggagaaataaaatcctttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccttgcaagagctcctgaaggaagcactaaacatggaaaggaacaaccagtaccagccagccactgcaaaaacgtgccaaattgtaaagaccatcgatgc----taggaagaaagtgcatcaactaacaggcaaaataaccagctcacatcatcatgacaggatcaaattcacaca-taacaatagtaacctgaaatgtaaataggctaaatgccccaataaaaagacacagactggcaaattggataaggagtca--------------------------agatccatcagtgtgctgt-tgcaggagacccatctcacatgcagagacacacataggctcaaaataaagggatgcaggaagatctaccaagcaaatggagagc-------aaaaaaa-gcaggggttgcaatcctagtctttgataaaacagactttaaaccaagaaagatcaaaagagacaaagaaggccattacataatcgcaaagggatcaattcaacatgaaaagctaactatc----ctaaatgtacatatatccaatacaggagcacccagattcataaagcaagtcctgagagacctaaaaag-agacttagactcccatac---aataatcatgggggactttaacaccccactgtcaatatttgacagatcaatgagacagaaggttcacaaggatatccaggacttgaactcagctctgcaccaagcagacctaatagacatctac-gaactctcca-cccctaaccaacagaatattcattcttctcagcatcacat--cacttattccaaaattgaccatatagttggaggtaaagcactc-ctcagcaaatgtaaaagaacagaaatcacaacaaactgtctctcagaccacagtgctatcaaattagagctcaggattaagaaactcactcaaaactgcacaactacatggaaactgaacaacctgctcctgaatgactactgggtaaataacaaaatgaaggcagaaattaagatgttctttgaaaccaatgagaacaa
i panPan2.chr1                    I 6 C 0
s gorGor5.CYUI01015145v1            3804387 1090 -   8455952 -aaaaaattttcaa-ccagaatttcatatccagccaaacaaagcttca-aagtgaaggagaaataaa-tcctttacagagaagcaaatgctgagagattttgtcaccaccaggcctgccttacaagagctcctaaaggaagcactaaacatggaaaggaacaaccggtaccagcca----ctgcaaaaacatgccaaactgtaaagaccattgacgc----taggaagaaactgcatcaactaacgggcgaaataaccagctaacatcataacgacaggatcaaattcacaca-taacaatattaaccttaaatgtaaatgggctaaatgccccagttaaaaaacacagaatggcaaattggataaagagtca--------------------------agacccatcagtgtgctgtactcaggaaacccatctcacatgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaagc-------aaaaaaaagcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggcca-tacataatggtaaagggatcaattcaacaagaagagttaactatc----ctaaatatatatgcatcctatacaggagcacccagattcataaagcaagtcctgagagacctacaaag-agatttagactcc-acac---aatcatcatgggagactttaacaccccactgtcaatattagacagatcaatgagacagaagcttaacaaggatatccaggacttgaactcagctctccaccaagcagacctaaaagacatctacagaactctcca-ccccaaatcaacagaatatacattcttctcagcaccacatcacacttattccaaaattgaccacatagttggaggtaaagcactc--tcagcaaatgtaaaagaatggaaatcacaacaaactgtc----agaccacagtgcaatcaaattagaactcaggattaagaaactcactcaaaaccgcacaactacatggaaactgaacaacctgctcctgaatgactactggg-aaataacaaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaa
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    265738 1103 +    297174 aaaagaattttcaacccagaatttcatatccagccaaatgaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccttacaagagctcctgaaggaagcactaaacatggaaaggaacaaccagtaccagcca----ctgcaaaagcatgccaaattgtaaagaccatcaatgc----taggaagaaagtgcatcaactaacaggcaaaataaccagctaacatcataatgacaggatcaaattcaccca-taacaatattaacctgaaatgtaaatgggctaaatgccccaattaaaaaacacagactggcaaattggataaagagtca--------------------------agactcatcagtgtgctgtattcaggagacccattgcatgtgcaaagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatagaaagc-------aaagaaaagcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatc----ctaaatacatatgtacccaatacaggagcacccagattcataaagcaagttcttagagacctaaaaagaagacttagactcccacac---aatcataatgggagactttaacaccccactgtcaatattagacagatcgatgagacagaagcttaacaaggatatccaggacttgaactcagctctgcaccaagcagacctaataaacacctacagaactctcca-ccccacatcaacagaatatacactcttctcagcaccacatcacacttattccaaaattggccacatagttggaagtaaagcactc-ctcagtgaatgtaaaagaacagaaatcacaacaaactgtctctcagaccacagtgcaatcaaattagaactcaggattaagaaactcactcaaaactgtgcaactacatggaaactgaacaatctgctcctgaatgactactgggtaaataacgaaatgaagatggaaacaaagatgttatttgaaaccaatgagaacga
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103755012 1108 - 225584828 aaaagaattttcaacccagaatttcatatccagccaaacaaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctcagagattttgctaccaccaggcctgccttacaagagctcctgaaggaagcactaaacatggaaaggaacaaccggtactagaca----ctgcaaaaacatgccaaattgtaaagatcattgctgctagataggaagaaagtgcatcaactaatgggcaaaataaccagctaacatcataatgacaggatcaaatttacaca-taacaatattaaccttaaatgtaaattgactaaatgctccaactagaaa--atagactggcaaattggataaagagtca--------------------------agacccatcagtgtgctgtattcaggagacccatctcacatgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaaac-------aaaaaagggcaggagttgcaaccctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaactaaacatatatgcacccaacacaggagcacccagattcataaagcaagtcctgagagacctaaaaag-agacgtagactcccacgc---aataataatgggagactttaacaccccactgtcaatattagacagatcaacgagacagaaagttaacaaggatatccaggaattgaactcagttctgcaccaagcagacctaatagacatctacaaaactctcca-ccccaaatcaatggaatatatattcttctcagcaccacatcgcacttattccaaaattgaccacatagttggaagtaaagcactc-ctcagaaaatgtaaaagagcaaacatcacaacaaactgtctctcagaccacagtgtaatcaaattagaactcaggataaagaaactcattcaaaaccgcacaactacatggaaactgaacaacctgcttctgaatgactactgggtaaataataaaatgaaggcagaaataaagatgttgtttggaaccaatgagaacaa
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211830590 1110 + 227556264 aaaagaattttcaacccagaatttcatatccagccaaacgaagcttcataagtggaggagaaataaaatcctttacagacaagcaaatgctcagagattttgccaccatcaggcctgccttacaagagctcctgaaggaagcactaaacatggaaaggaacaaccagtaccagcca----ctgcaaaaacatgtcaaattgtaaagaacatcaatgc----taggaagaaagtgtatcaactaatgggcagaataaccagctaacatcataatgacaggatcaaattcacacattaacaatattaacctgaaatgtaaatggaccaaatgccccaattaaaaaacacagactggcaaactggataaagagtca--------------------------agacccatcagtgcgctgtattcaggagacccatctcatatgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaaacaaaacaaaaaaaaaagcaggggttcatatcctagtctccaataagacagactttaaaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatc----ctaaacatatatgcacccaatacaggagcatccagattcataaagcaagtcctgagagacctaaaaag-agatgtagactcccacac---aataataacgggagactttaacaccccactgtcaacattagacagatcaacgagacagaaacttaataaggatatccaggacttgaactcatttctgcaccaagcagacctaatagacatctatagaactctcca-ccccaaatcaacagaatatacattcttctcagcaccacatcacacttattccaaaattgaccacatatttggaagtaaagcactc-ctcagcaaatgtaaaagaacagaaatcacaacaaactgtttcttacaccacagtgcaatcaaattagaactcaggattaagaaactcactcaaaactgtacaactacatggaaactgaacaacctgctcctgaatgactactgggtacataacgaaatgaaggcagaaataaagatgttctttagaaccaatgagaacaa
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11407878 1099 -  14060431 aaaagaattttcaacccagaatttaatatccagccaaacgaagcttcataagtggaggagaaataaaatcctttacagacaagcaaatgctcagagattttgttaccattaggtctgccttacaagagctcctgaaggaagcactaaacatggaaaggaacaaccagtaccagcca----ctgcaaaaacatgtcaaattgtaaagaacatcaatgc----taggaagaaagtgtatcaactaatgggcagaataaccagctaacatcataatgacaggatcaaattcacacattaacaatattaacctgaaatgtaaatgggataaatgccccaattaaaaaacacagactggcaaactggataaagagtca--------------------------agacccatcagtttgctgtattcagaagacccatctcatatgcagagatacacataggctcaaaataaagggatggaggaagatctaccaagcagatggaaaacaaaacagaaaaaaaagcagaggttcatatcctagtctccaataagacagactttaaaccaacaaagatcaaaagagacaaagaaggtcattatataatggtaaagggatcaattcaacaagaagagctaactatcctaactaaacatatatgcacccaatacaggagcatccagattcataaagcaagtcctgacagacctaaaaag-agatgtagactcccacac---aataataacgggagactttaacaccccactgtcaacattagacagatcaacgagacagaaacttaataaggatatccaggacttgaactcatttctgcaccaagcagacctaatagacatctatagaactctccacccccaaatcaacggaatatacattcttctcagca-cgcatcacacttattccaaaattgaccacata-ttggaagt-aagcactctctcagcaaatg---aaaaacagaaatcacaacaaa--gtttcttaca-cacagtgcaatcaaattagaactcaggattaagaaac-cactc-aaactg-acaacgtcatggaaactgaacaacctgctcctgaatgactactggtaata----gaaatgaaggcagaaataaagatgttctttagaacc-atgagaacaa
i macNem1.NW_012017688v1          C 0 I 19
s cerAty1.NW_012001440v1            1819355 1082 -   2461138 aaaagaattttcaacccagaatttcatatccagccaaacgaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctcagagattttgctaccaccaggcctgccttacaagagctcctgaaggaagcactaaacatggaaaggaacaaccggtactagaca----ctgcaaaaacatgccaaattgtaaagatcattgctgctagataggaagaaagtgcatcaactaatgggcaaaataaccagctaacatcataatgacaggatcaaatttacaca-taacaatattaaccttaaatgtaaattgactaaatgctccaactagaaa--acagactggcaaattggataaagagtca--------------------------agacccatcagtgtgctgtattcaggagacccatctcacatgcagagacacgcagaggctcaaaataaagggatggaggaagatctaccaagcaaatggaaaac-------aaaaaagggcaggagttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaactaaacatatatgcacccaacacaggagcacccagattcataaagcaagtcctgagagacctaaaaag-agacgtagactcccacgc---aataataatgggagactttaacaccccactgtcaatattagacagatcaacgagacagaaagtcaacaaggatatccaggaattgaactcagttctgcaccaagcagacctaatagacatctatagaactctcca-ccccaaatcaatggaatatacgttcttctcagcaccacatcgcacttattccaaaattgaccacatagttggaagtaaagcactc-ttcagaaaatgtaagagagcaaacatcacaacaaactgtctctcagaccacagtgtaatcaaattagaactcaggataaagaaactcattcaaaaccg--------------------------cgcttctgaatgactactgggtaaataataaaatgaaggcagaaataaagatgttgtttgggaccaatgagaacaa
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1018334 1101 -   1280666 aaaagaattttcaacccacaatttcatatccagccaaacgaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctcagagattttgctaccaccaggcctgccttacaagagctcctgaaggaagcactaaacatggaaaggaacaaccggtaccagaca----ctgcaaaaacatgccaaattgtaaagaccattgatgctaggtaggaagaaagtgcatcaactaatgggcaaaataaccagctaacatcataatgacaggatcaaatttacaca-taacaatattaaccttaa----tattggactaaatgccccaattagaaa--acagactggcaaactggataaagagtca--------------------------agacccatcagtatgctgtattcaggagacccacctcacatacagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggagaaca------aaaaaaaagcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaacgaaggccattacataatagtaaagggatcaattcaacaagaagagctaactatc----ctaaatatatacacacccaatacaggagcatccggatacataaagcaagtcctgagagacctaaaaag-agatgtagactcccacac---aataataatgggagactttaacaccccactgtcaacattagacagatcaacgagacagatgcttaacaaggatatccaggaactgaactcagttctgcaccaagcagacctaatagacatctacagaactctcca-ccccacatcaatggaatatacattcttctcagcaccacatcacacttattccaaaattgaccacatagttggaagtaaagcactc-ctcagaaaatgtaaaagaacagaaatcacaacaaactgtctctcagaccacagtgtaatcaaattagaactcaggataaagaaactcactcaaaaccgcacaactgtgtggaaactgaacaacctgcttctgaatgactactgggtaaataacaaaatgaaggcagaaataaagatgttctttggaaccaatgagaacaa
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             503498 1136 -   1325925 aaaagaattttcaacccagaatttcatatccagccaaacgaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctcagagattttgctaccaccaggcctgtcttacaagagctcctgaaggaagcactaaacctagaaaggaacaaccggtactagaca----ctgcaaaaacatgccaaattgtaaagatcattgctgctagataggaagaaagtgcatcaactaatgggcaaaataaccagctaacatcataatgacaggatcaaatttacaca-taacaatattaaccttaaatgtaaattgactaaatgctccaactagaaa--acagaccggcaaactggataaagagtcaagacccatcagtgtgctgtattcaggagacccatcagtgtgctgtattcaggagacccatctcacatgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaaac-------aaaaaagggcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggtcattacataatggtaaagggatcaattcaacaagaagagctaactatcctaactaaacatatatgcacccaacacaggagcacccagattcataaagcaagtcctgagagacctaaaaag-agatgtagactcccacgcaataataataatgggagactttaacaccccactgtcaatattagacagatcaacg-gacagaaagttaacaaggatacccaggaattgaactcagttctgcaccaaacagacctaatagacatctgcagaactctcca-ccccaaatcaatggaatatacattcttctcagcaccacatcgcacttattccaaaattgaccacatagttggaagtaaagcactc-ctcagaaaatgtaaaagagcaaacatcacaacaaactgtctctcagaccacagtgtaatcaaattagaactcaggataaagaaactcattcaaaaccacacaactacgtggaaactgaacaacctgcttctgaatgactactgggtaaataataaaatgaaggcagaaataaagatgttgtttggaaccaatgagaacaa
i manLeu1.NW_012105087v1          C 0 C 0
e otoGar3.GL873592                  8642416    0 -   9938236 C
e calJac3.chr18                     3627276    0 +  47448759 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e colAng1.NW_012114988v1            3736073 1574 -   3775709 I
e cebCap1.NW_016108146v1             265186    3 +    407294 I
e saiBol1.JH378257                  2804406    0 -   4070394 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=83577.000000
s hg38.chr1_KI270711v1_random         16359 21 +     42210 agacacaacataccagaatct
s panTro5.chr1                    208007072 21 - 228573443 agacacaacataccagaatct
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208141094 21 - 229774977 agacacaacataccagaatct
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3805477 21 -   8455952 agacacaacataccagaatct
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    266841 21 +    297174 agacacaacgtaccagaatct
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103756120 21 - 225584828 agacacaacataccggaatct
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211831700 21 + 227556264 agacacaacataccagaatct
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1820437 21 -   2461138 agacacaacataccggaatct
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1019435 21 -   1280666 agacacaacataccacaatct
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             504634 21 -   1325925 agacacaacataccggaatct
i manLeu1.NW_012105087v1          C 0 C 0
e otoGar3.GL873592                  8642416  0 -   9938236 C
e calJac3.chr18                     3627276  0 +  47448759 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e colAng1.NW_012114988v1            3736073 1574 -   3775709 I
e cebCap1.NW_016108146v1             265186  3 +    407294 I
e saiBol1.JH378257                  2804406  0 -   4070394 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e macNem1.NW_012017688v1           11408977 19 -  14060431 I

a score=914476.000000
s hg38.chr1_KI270711v1_random         16380 208 +     42210 ctgggacacatttaaagcaatgtgtagagggaaaattatagcactaaatgcccacaagagaaagcagaaaagatctaaaattgacaccctaacatcacaattaaaataactagagaagcaa-agcaaacaaattcaaaagctagcagaagacaaga---agtaactaagatcagagcagaactaaaggagatagagacac--aaaaaacccttc
s panTro5.chr1                    208007093 205 - 228573443 ctgggacacatttaaagcaatgtggagagggaaatttctagcactaaatgcccacaag-gaaag---gaaagatctaaaatcaataccttaacatcacaattaaaagaactagagaagcaagagcaaacaaattcaaaagctagcagaaggcaaga---aataactaagatcagagcagaactgaaggagatagagacac--aaaaaacccttc
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208141115 205 - 229774977 ctgggacacatttaaagcagtgtggagagggaaatttctagcactaaatgcccacaag-gaaag---gaaagatctaaaatcaataccttaacatcacaattaaaagaactagagaagcaagagcaaacaaattcaaaagctagcagaaggcaaga---aataactaagatcagagcagaactgaaggagatagagacac--aaaaaacccttc
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3805498 207 -   8455952 ctgggacacatttaaagcaatgtgtagagggaaaattatagcactaaatgcccacaagagaaagca-gaaagatctaaaattgacaccctaacatcacaattaaaataactagagaagcaa-agcaaacaaattcaaaagctagcagaagacaaga---agtaactaagatcagagcagaactaaaggagatagagacac--aaaaaacccttc
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    266862 209 +    297174 ctgggacacatttaaagcagcgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatccaaaattgacaccctaacatcacaattaaaagaactagaaaagcgagagcaaacacattcaaaagctagcagaaggcaaga---aataactaagatcagagtagaactgaaggaaatagagacac--aaaaaactcttc
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103756141 213 - 225584828 ctgggacacatttagagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaattgatactctaacatcacaattaaaagaactagagaagcaag-gcaaacaaattcaaaagctagcagaagacaagaaataataacgaagatcagagcagaactaaaggagatagagacacaaaaaaaacccttc
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211831721 209 + 227556264 ctgggacacatttaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaattgacaccctaacatcacaatgaaaagaactagagaagcaagaggaaacaaattcaaaagctagcagaagacaaga---aataactaagctcacagcagaactaaaggagatagagaccc--aaaaaacccttc
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11408996 209 -  14060431 ctggagcacatttaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaattgacaccctaacatcacaatgaaaagaactagagaagcaagaggaaacaaattcaaaagctagcagaagacaaga---aataactaagctcacagcagaactaaaggagatagagaccc--aaaaaacccttc
i macNem1.NW_012017688v1          I 19 C 0
s cerAty1.NW_012001440v1            1820458 212 -   2461138 ctgggacacatttagagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaattgatactctaacatcacaattaaaagaactagagaagcaag-gcaaacaaattcaaaagctagcagaagacaagaaataataatgaagatcagagcagaactaagggagatagagacac-aaaaaaacccttc
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1019456 212 -   1280666 ctgggacacatttaaagcagtgtgtagagggaaatttatagcgctaaatgcccacaagagaaagcaggaaagatctaaaattgacaccctaatatcacaattaaaagaactagagaagcaag-gcaaacaaattcaaaagctagcagaagacaataaataataacgaagaccagagcagaactaaaggagatagagacac-aaaaaaacccttc
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             504655 213 -   1325925 ctgggacacatttagagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaattgatactctaacatcacaattaaaagaactagagaagcaag-gcaaacaaattcaaaagctagcagaagacaagaaataataacgaagatcagagcagaactaaaggagatagagacacaaaaaaaacccttc
i manLeu1.NW_012105087v1          C 0 C 0
e otoGar3.GL873592                  8642416   0 -   9938236 C
e calJac3.chr18                     3627276   0 +  47448759 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e colAng1.NW_012114988v1            3736073 1574 -   3775709 I
e cebCap1.NW_016108146v1             265186   3 +    407294 I
e saiBol1.JH378257                  2804406   0 -   4070394 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=244559.000000
s hg38.chr1_KI270711v1_random         16588 50 +     42210 aaaaaa-tcaatgaatccagg-gctgg-ttttttgaaaagatcaacaagaAAA
s panTro5.chr1                    208007298 52 - 228573443 aaaaaaatcagtgaatccaggagctgg-ttttttgaaaagatcaacaagaAAT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208141320 52 - 229774977 aaaaaaatcagtgaatccaggagctgg-ttttttgaaaagatcaacaagaAAT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3805705 50 -   8455952 aaaaaa-tcaatgaatccagg-gctgg-ttttttgaaaagatcaacaagaAAA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    267071 52 +    297174 aaaaaaatcaatgaatccaggagttcg-ttttgtgaaaagatcagcaagaAAT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103756354 51 - 225584828 -aaaaaatcagtgaatccaggagctgg-ctttttgaaaagatcaacaagaAAA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211831930 52 + 227556264 -aaaaaatcagtgaatccagtagatgatttttttgaaaagatcaacaagaAAT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11409205 52 -  14060431 -aaaaaatcagtgaatccagtagatgatttttttgaaaagatcaacaagaAAT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1820670 51 -   2461138 -aaaaaatcagtgaatccaggagctgg-ctttttgaaaagatcaacaagaAAA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1019668 51 -   1280666 -aaaaaatcagtgaatccaggagctgg-ctttttgaaaagatcaacaagaAAA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             504868 51 -   1325925 -aaaaaatcagtgaatccacgagctgg-ctttttgaaaagatcaacaagaAAA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3737647 51 -   3775709 -aaaaaatcaatgaatccaggagctgg-ttttttgaaaagatgaacaagatAT
i colAng1.NW_012114988v1          I 1574 C 0
e otoGar3.GL873592                  8642416  0 -   9938236 C
e calJac3.chr18                     3627276  0 +  47448759 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e cebCap1.NW_016108146v1             265186  3 +    407294 I
e saiBol1.JH378257                  2804406  0 -   4070394 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=88585.000000
s hg38.chr1_KI270711v1_random         16638 12 +     42210 CCCTGTTTGGCT
s panTro5.chr1                    208007350 12 - 228573443 CCCTGTTTGGCT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208141372 12 - 229774977 CCCTGTTTGGCT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3805755 12 -   8455952 CCCTGTTTGGCT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    267123 12 +    297174 CCCTATTTGGCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103756405 12 - 225584828 CCCTGTTTGGTT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211831982 12 + 227556264 CCCTGTTTGTCT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11409257 12 -  14060431 CCCTGTTTGTCT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1820721 12 -   2461138 CCCTGTTTGGTT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1019719 12 -   1280666 CCCTGTTTGGCT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             504919 12 -   1325925 CCCTGTTTGGTT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3737698 12 -   3775709 CCCTGTTTGGCT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3627276 12 +  47448759 CCCTGTTTGCTG
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2804406 12 -   4070394 CCCCGTTTGCTG
i saiBol1.JH378257                C 0 C 0
s otoGar3.GL873592                  8642416 12 -   9938236 CTTGGTTTGGTT
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e cebCap1.NW_016108146v1             265186  3 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=655670.000000
s hg38.chr1_KI270711v1_random         16650  89 +     42210 AGTTCACCTGGCTCATCTGATGGCAAGTTCCTATC------------TTGAGAGGACTATGAAATTAAAACCAATACAAGTGCCAC----AAATAACATACAACA
s panTro5.chr1                    208007362  89 - 228573443 AGTTCACCTGGCTCATCTGATTGCAAGTTCCTATC------------TTGAGAGGACTATGAAATTAAAACCAACACAAGGGCCAC----AAATAATGTACAACA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208141384  89 - 229774977 AGTTCACCTGGCTCATCTGATTGCAAGTTCCTATC------------TTGAGAGGACTATGAAATTAAAACCAACACAAGGGCCAC----AAATAATGTACAACA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3805767  88 -   8455952 AGTTCACCTGGCTCATCTGATGGCAAGTTCCTATC------------TTGAGAGGACTATGAAATTAAAACCAA-ACAAGTGCCAC----AAATAACATACAACA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    267135  89 +    297174 AGTTCACCTGGCTCATCTGATTGCAAGTTCCTATC------------TTGACAGGACTACAAAATTAAAACCAATACATGGGCCAC----AAATAACACACAACA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103756417  89 - 225584828 CGCTCACCTGGTTCATCTGATTGCACGTGCCTATA------------TTGAGAGGACTATGAAATTAAAACCAATACAGTTACCAC----AAATAACGCACAACA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211831994  89 + 227556264 CATTCATCAGGCTGATCTGATTGCAAGTGCCTATA------------TTGAGAGGACTATGAAATTAAAACAAATACAAGTGCCAC----AAATAACACACAACA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11409269  89 -  14060431 CATTCATCAGGCTGATCTGATTGCAAGTGCCTATA------------TTGAGAGGACTATGAAATTAAAACAAATACAAGTGCCAC----AAATAACACACAACA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1820733  89 -   2461138 CGCTCACCTGGTTCATCTGATTGCAAGTGCCTACA------------TTGAGAGGACTATGAAATTAACACCAATACAAGTGCCAC----AAATAATGCACAACA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1019731  89 -   1280666 CATTCACCTGGCTCATCTGATTGCAAGTGCCTATA------------CTGAGAGGACTACGAAATTAAAACCAATACAGGTACCAC----GAATAACACACAACA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             504931  89 -   1325925 CACTCACCTGGTTCATCTGATTGCAAGTGCCTATA------------TTGAGAGGACTATGAAATTAAAACCAATACAGTTACCAC----AAATAACGTACAACA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3737710  89 -   3775709 AGTTCACCTGGCTCAACTGATTGCAAGTACCTATC------------TTGAGAGGACTATGAAATTAAAACCAATACAAGTGCCAC----AAATAATGCACAACA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3627288  89 +  47448759 AGTTCACCTGGCTCATCTGATTGCAGGTTCCCATC------------TTGGGAGGAGTCAGAAATTAAAATCTATACACGTGCCAC----AAATCACCCACAACA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2804418  88 -   4070394 AGGTCGCCTGGCTCA-CTGATTGCAGGCTACTATC------------GTGGGAGGACTAAGAAATTAAAACGTATAAAGGTGCCAC----AAGTCACACACAACA
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             265189  89 +    407294 AGTTCACCTGGCTCATCTGATTGCAGGCTCCTATC------------TTGGGAGGACTAAGAAATTAAAACCTACACAAGTGCCAC----AAATCACCCACAACA
i cebCap1.NW_016108146v1          I 3 C 0
s otoGar3.GL873592                  8642428 101 -   9938236 AGATCACCTGGGCCAGCTAACCA-AAGTTGAAGTCGGGATGAGTCAGGTGAAGAGATTGAAGAATTAAAATCTAGGCAAGCATCTCCGTGAAAAAGCCCACA---
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=4381006.000000
s hg38.chr1_KI270711v1_random         16739 606 +     42210 TTGTAAATCAGCACAATTTGTAGCTGGGTGAATGGAAGAAATAGTTCTATTCATCACTTCCTCATTTTCCCTAAATCTACAATCTCCAGATGTCACTACTGAATTAACAGCCAACAATTCCACAACATTACCTGGGAGACACTGGCCCTTTTTCTTCCTCTTCCTCATCATCACTTTCATTTTCTGTAAATAAATTCAGAGAAGCAGGT--CACATTAAGCAATTCATACTTCAC---------------------ATATGACCAAATCACTGTCCAGTCATAGCACAAGGACATAACTATTCTCAGTGCAAGAATAAGGATTCTGACAGGAATATTCTAGGGTGCCCTAGATTAACTTTGGTGAGAATTAGATGACCCTGCTTTCCAGACCCACAGGCCAAAATCTCCCTCTACGTGTACACCATAATGCCAT-ATTCCCTG-CCTGAGT-----C--AAAGTTAAACAAAATTTTTTCCCCAAA-AAAATCTCCAAAAATTGGT----CCATTTTCTAAGAGTGTTGCTGCAATACGGACTTATATCACCAGATAACATGGACATTAAATGTTTAGAGGCATC-TATACATGAAACACGACTGATAGATAAATTTGAACAACTCTTCCTTTAAAAAGAATCT
s panTro5.chr1                    208007451 612 - 228573443 TTGTTAATAAGGACAACTTGTAGATGGGTGAATGGAATAAAAAGATCTATTCATTGCTTCCTCATTTTCTCTAAATCTACAAACTCCAGCTGCCACTATTGAATTAACAGCCCACAATTCCATGGCATTACCTGGGAGACACTGGCCCTTTTTCTTCCTCTTGCTCATGATCACTTTCATTTTCTGGAAATAAATTCAGAGAAGCAGGT--CACATTAAGCAATTCACACTTCAC---------------------ATATGACCAAATCAGTGTCCAGTCATAGGACAAGGACATAACTATTCTCAGTGCAAGAATATGGATTCTGACAGGAGCACTCTAGGGTGCCCTAGATTAACTCTGGTGAGAAATAGATGACCCTGCTTTCCAGACCCACAGGCCAAAATTTCCCTCTATGGGTAGACCATAATGCCAT-ATTCCCTG-CCTGAGTCTATGC--AAAGTTAAACAAAAATTTCCCCCC----AAAATCGCCAATAATTGGTCAAACAATTTTCTAGGAGTGTTGTTGCAATACTGACTTATATCACCAGGTAACATGGACATTAAATGTTTAGAGGGATC-TACACATGAAACTCGACTGATAGATAAATTCTAACAACTCTTGCATTAAAAAGAATCT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208141473 612 - 229774977 TTGTTAATAAGGACAACTTGTAGCTGGGTGAATGGAATAAAAAGATCTATTCATTGCTTCCTCATTTTCTCTAAATCTACAAACTCCAGCTGCCACTATTGAATTAACAGCCCACAATTCCATGGCATTACCTGGGAGACACTGGCCCTTTTTCTTCCTCTTGCTCATGATCACTTTCATTTTCTGGAAATAAATTCAGAGAAGCAGGT--CACATTAAGCAATTCACCCTTCAC---------------------ATATGACCAAATCAGTGTCCAGTCATAGGACAAGGACATAACTATTCTCAGTGCAAGAATATGGATTCTGACAGGAGCACTCTAGGGTGCCCTAGATTAACTCTGGTGAGAAATAGATGACCCTGCTTTCCAGACCCACAGGCCAAAATTTCCCTCTATGGGTAGACCATAATGCCAT-ATTCCCTG-CCTGAGTCTATGT--AAAGTTAAACAAAAATTTCCCCCC----AAAATCGCCAATAATTGGTCAAACAATTTTCTAGGAGTGTTGTTGCAATACTGACTTATATCACCAGGTAACATGGACATTAAATGTTTAGAGGGATC-TACACATGAAACTCGACTGATAGATAAATTCTAACAACTCTTGCATTAAAAAGAATCT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3805855 609 -   8455952 TTGTAAATCAGCACAATTTGTAGCTGGGTGAATGGAAGAAATAGTTCTATTCATCACTTCCTCATTTTCCCTAAATCTACAATCTCCAGATGTCACTACTGAATTAACAGCCAACAATTCCACAACATTACCTGGGAGACACTGGCCCTTTTTCTTCCTCTTCCTCATCATCACTTTCATTTTCTGTAAATAAATTCAGAGAAGCAGGT--CACATTAAGCAATTCATACTTCAC---------------------ATATGA-CAAATCACTGTCCAGTCATAGCACAAGGACATAACTATTCTCAGTGCAAGAATAAGGATTCTGACAGGAATATTCTAGGGTGCCCTAGATTAACTTTGGTGAGAATTAGATGACCCTGCTTTCCAGACCCACAGGCCAAAATCTCCCTCTACGTGTAGACCATAATGCCAT-ATTCCCTG-CCTGAGT-----C--AAAGTTAAACAAAATTTTTCCCCCAAA-AAAATCTCCAAAAATTGGTCAAACAATTTTCTAAGAGTGTTGCTGCAATACGGACTTATATCACCAGGTAACATGGACATTAAATGTTTAGAGGCATC-TATACATGAAACACGACTGATAGATAAATTTGAACAACTCTTGCTTTAAAAAGAATCT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    267224 612 +    297174 TTGTTAATAAGGACAATTTGTAATTGGGTGAAAAGAAGAAATAGTTCTGTACATCACTTCCCCTTTTTCCCTAAATCTACAATCTCCTGGTGTCACTATTGAATTAACAGCCCACAATTCCACAGCATTACCTGGGAGACACTGGCCCTTTTTCTTCCTCTTCCTCATCATCACTTTCATTTTCTGTAAATAAATTCAGAGAAGCAGGT--CACATTAAGCAATTCACACTTCAC---------------------ATATGACCAAATCAGTGTTCAGTCATAGCACAAGGACATAACTATTCTCAGTGCAAGAATAT-GATTCTGATAGGAATATTCCAGGGTACCCTATATTAAGTCTGATGAGAAGTAGATGACCCTGCTTTCCAGACCCACAGGCCAAAATCTCTCTCTATGGGTAGACCATAATGCCAT-ATTCCATT-CCTGAGTCTATGC--AAAGTTAAACAAAATTTTTCCCCA--A-AAAATCTCCAAAAATTGCTCAAACAATTTTCTAGGAGTGTTGCTGCAATACTGACTTATATCCCCAGGTAACACAGACATTAAATGTTTAGAGGCATC-TGTACATGAAACTCGACTGATAGATAAATTTGAACAGCTCTTGCTTTAAAAAGAATCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103756506 608 - 225584828 TTGTTAATAAGGATAATTTGTAGCTGGGTGAACAGAAGAAATAGTTCTATTCATCACCACCCCTTTTTCCCTAAATCTACAATCTCCAGGTGTCACTACTGAAGTAACAGCCCACAATTCCACAGCATTACCTGGGAGACACTGGCCCTTTTTCTCCCTCTTCCTCATCATCGCTTTCATTTTCTGTAAATAAATTCAGGGAAGCAGGT--CACATTAAGCAATTCACACTTCAC---------------------ATATGACCAAATCACTGTCCAGTCATAGCACAAGGATGTAACTATTCTCAGTGCAAGAATATGAATTCTGACAGGAATATTCTAGGGTGCCCTAGATAAAGTGTGGTGAGAAGTAGATGACCCTGCTTTCCAGACCCACAGGCCAAAGTCTCCCTCTACATGTAGACCATAATGCCAT-ATTCCCTG-CCTGAGT-----C--AAAGTTAAACAAAATTTTTCCCAA--A-AAACTCTCCAGAAATTGGTCAAACAATTTTCTAGGAGTGTTGCTGCAATACTGACTTATATCACCAGGTAACATGGACATTAAATGTTTAGAGGCATC-TATACATGAAACTCGACTGATAGATAAATTTGAACAACTCTTGCTTTAAAAAGAATCT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211832083 605 + 227556264 TTGTTAATAAGGACCATTTGTAGCTGGGTGAAGGGAAGAAATAGTTCTATTCATCACCTCCCCTTTTTCCCTCAATCTACAATCTCCAGGTGTCACTACTGAAGTAACAGCCCACAATTCCACAGCATTACCTGGAAGACACTGGCCCTTTTTCTTCCTCTTCCTCATCATCACTTTCACTTTCTGTAAATAAATTCAGAGAAGCAGGT--CACATTAAGCAATTCACACTTCAC---------------------ATATGACCAAATCACTGTCCAGTCATAGCACAAGGACATAACTATTCTCAGTGCAAGAATATGGATTCTGACAGGAATATTCTAGGATGCCCTAGATAAAGTCTGGTGAGAAGTAGATGACCCTGCTTTCCAGACCCACAGGCCAAAATCTCCCTCTACATGTAGACCATAATGCCATAATTCCCTG-CCTGAGT-----C--AAAGTTAAACAAAATTTTTCCCAA--A-AAACTCTCCAGAAATTGGT----CAATTTTCTAGGAGTGTCGCCGCAATACTGACTTATATTACCAGGTAACATGGACATTAAATGTTTAGAGGCATC-TATACATGAAACTCGACTGATAGATAAATTTGAACAATTCTTGCTTTGAAAGGAATCT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11409358 605 -  14060431 TTGTTAATAAGGACCATTTGTAGCTGGGTGAAGGGAAGAAATAGTTCTATTCATCACCTCCCCTTTTTCCCTCAATCTACAATCTCCAGGTGTCACTACTGAAGTAACAGCCCACAATTCCACAGCATTACCTGGGAGACACTGGCCCTTTTTCTTCCTCTTCCTCATCATCACTTTCACTTTCTGTAAATAAATTCAGAGAAGCAGGT--CACATTAAGCAATTCACACTTCAC---------------------ATATGACCAAATCACTGTCCAGTCATAGCACAAGGACATAACTATTCTCAGTGCAAGAATATGGATTCTGACAGGAATATTCTAGGATGCCCTAGAATAAGTCTGGTGAGAAGTAGATGACCCTGCTTTCCAGACCCACAGGCCAAAATCTCCCTCTACATGTAGACCATAATGCCATAATTCCCTG-CCTGAGT-----C--AAAGTTAAACAAAATTTTTCCCAA--A-AAACTCTCCAGAAATTGGT----CAATTTTCTAGGAGTGTCGCCGCAATACTGACTTATATTACCAGGTAACATGGACATTAAATGTTTAGAGGCATC-TATACATGAAACTCGACTGATAGATAAATTTGAACAATTCTTGCTTTGAAAGGAATCT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1820822 608 -   2461138 TTGTTAATAAGGACAATTTGTAGCTGGGTGAACAGAAGAAATAGTTATATTCATCACCACCCCTTTTTCCCTAAATCTACAATCTCTAGGTGTCACTACTGAAGTAACAGCCCACAATTCCACAGCATTACCTGGGAGACACTGGCCCTTTTTCTTCCTCTTCTTCATGATCACTTTCATTTTCTGTAAATAAATTCAGAGAAGCATGT--CACATTAAGCAATTCACACTTCAC---------------------ATATGACCAAATCACTGTCCAGTCATAGCACAAGGATGTAACTATTCTCAGTGCAAGAATATGAATTCTGACAGGAATATTCTAGGGTGCCCTAGATAAAGTGTGGTGAGAAGTAGATGACCCTGCTTTCCAGACCCACAGGCCAAAGTCTCCCTCTACATGTAGACCATAATGTCAT-ATTCCCTG-CCTGAGT-----C--AAAGTTAAACAAAATTTTTCCCAA--A-AAACTCTCCAGAAATTGGTCAAACAATTTTCTAGGAGTGTTGCTGCAATACTGACTTATATCACCAGGTAACATGGACATTAAATGCTTAGAGGCATC-TATACATGAAACTCGACTGATAGATAAATTTGAACAACTCTTGCTTTAAAAAGAATCT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1019820 624 -   1280666 TTGTTAATAAGGACAATTTGTAGCTGAGTGAAGGGAAGAAATAGTTTTATTCATCA-----CCTTTTTCCCTAAATCTACGATCTCCGGGTGTCACTACTGAATTAACAGCCCCCAATTCCACAGCATTACCCGGGAGACACTGGCCCTTTTTCTTCCTCTTCCTCATCATCACTTTCATTTTCTGTAAATCAATTCAGAGAAGCAGGT--CACATTAAGCAATTCACACTTCACATATGACCAAATCACTGTCATATATGACCAAATCACTGTCCAGTCATAGCACAAGGAGGTAACTATTCTCAGTGCAAGAATATGGATTCTGAGAGGAATATTCTAGGGTGCCCTAGATAAAGTGTGGTGAGAAGTAGATGACCCTGCTTTCCAGTCCCACAGGCCAAAATTTCCCTCTGTGGGTAGACTATAATGCCAT-ATTCCCTG-CCTGAGT-----C--AAAGTTAAACAAAATTTTTCCCAA--A-AAACTCTCCAGAAATTGGTCAAACAATTTTCTAGGGTTTTCGCCGCAATACTGACTTATATCACCAGGTAACATGGACATTAAATGTTTAGAGGCATC-TATACATGAAACTCGACTGATAGATAAATTTGAACAACTCTTGCTTTAAAAAGAATCT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             505020 608 -   1325925 TTGTTAATAAGGACAATTTGTAGCTGGGTGAACAGAAGAAATAGTTCTATTCATCACCACCCCTTTTTCCCTAAATCTACAATCTCTAGGTGTCACTACTGAAGTAACAGCCCACAATTCCACAGCATTACCTGGGAGACACTGGCCCTTTTTCTTCCTCTTCCTCATCATCACTTTCATTTTCTATAAATAAATTCAGAGAAGCATGT--CACATTAAGCAATTCGCACTTCAC---------------------ATATGACCAAATCACTGTCCAGTCATAGCACAAGGATGTAACTATTCTCAGTGCAAGAATATGAATTCTGACAGGAATACTCTAGGGTGTCCTAGATAAAGTGTGGTGAGAAGTAGATGACCCTGCTTTCCAGACCCACAGGCCAAAGTCTCCCTTTACATGTAGACCATAATGCCAT-ATTCCCTG-CCTGAGT-----C--AAAGTTAAACAAAATTTTTCCCAA--A-AAACTCTTCAGAAATTGGTCAAACAATTTTCTAGGAGTGTTGCTGCAATACTGACTTATATCACCAGGTAACATGGACATTAAATGTTTAGAGGCATC-TATACATGAAACTCAACTGATAGATAAATTTGAACAACTCTTGCTTTAAAAAGAATCT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3737799 608 -   3775709 TTGTTAATAAGGACAATTTGTAGCTGAGTGAATGAAAGAAATCGTTCTATTCATCGCTTCCTCGTTCTCCCTAAATCTACAATCTCCAGGTGTCACTACTGAATTCACAGCTCACAATTCCACAGCATTACCTGGGAGACACTGGCCCTTTTTCTTCCTCTTCTTCATGATCACTTTCATTTCCTGTAAATAAATTCAGAGAAGCAGGT--CACATTAAGCAATTCACACTTCAC---------------------ATATGACCAAATCACTGTCCAGACATAGCACAAGGACCTAACTATTCTCAGGGCAAGAACATGGATTCTGACATAAATATTCTAGGGTGGTCTAGATTAAGTCTGGTGAGAGGTAGATGACCCTGCTTTCCAGACCCATAGGCCAAAATTTCCCTCTGTGGGTAGACCATAATGCCAT-ATTCCTTG-CCTGAGT-----CTGCAAAGAAAATAAAATTTTCCCTCA--A-AA--TCTCTAAAAATTAGTCAAACAATTTTCTAGAAGTGTTGCTGCAATACTGACTTATATCACCAGGTACCAGGGACATTAAATGTTCAGAGGCATC-TGTACATGAAACTCAACTGATAGACGCATTCTAACAACTCTTGCTTTAAAAAGAATCT
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2804506 609 -   4070394 TTGTGAGTAAAAACAATCTGTAGCTGGGTGAATGGAAGAAAGAGTTCTAGTCATCACGTCCTCATTTTCCCTGGA-CTGCAGTCTCCAGGTGTCACTACTGAAATAACAGCCCAGAGCTCCATGACATTACCTGGGGGGCACTGGCCCTTTTTCTTGCTCTTCCTCATCATCATGTTGACTTTCTGTAAATACATTCAGAGAAGCAGGT--CAAATTAAGCAAATCACACTTCAC---------------------ATATGACCAAATCTGTGTTTAGTCACAGCACAAGCACAGAAATGCTCTCAGGGCAAGAATACAAATTCTGACAGGAAGATGCCAGGGTGCCCGAGATGTAGCCTGGTGAG---TAGATGAGCCTGCTTTCCAGATGCACAGGCCAAAATCTCCCTGTACAGGTACACCATAATGCCAT-ATTCTCTC-CGTGAGTCTAGAC--AAAGTTAAACCAAATTTTTTCCCA--G-AAAATCTCCAAAGAGTAGTCAAACTCTTTTCTGGGAGTGTGGCTGCAATACTGACTTATCTCACCAGGTAGCAAGGTCATTGAATGGTCAGAGGCATCTTAGACATGAAACTGGACA-ATACGTCCATTCTAACAACACTTGCTTGAAAAAGAATCT
i saiBol1.JH378257                C 0 I 495
s cebCap1.NW_016108146v1             265278 611 +    407294 CTGTCAATAAAGACAATTTGTAGCTGGGTGAATGGAAGGAAGAGTTCTAGTCATCACTTCCCCGTTTTCCCTGGAGCTGCAGTCTTCAGGTGTCACTACTGAGCTAACAGCCCACAACTCCACCGCATTACCTGGGGGGCGCTTGCCATTGTTCTTCCACTTCCTCATCATCATTTTGACTTTCTGTAAATAAATTCAGAGAAGCAGGT--CACATTAAGCAAATCACACTTCAC---------------------ATGGGACCAAATCACTGTTTAGTCATAGCACGAGCACAGAATTGTTCTCAGGGCAAAAATACAAATTCTGACAGGAAGATTCCAGGGTGCCCTAGAAGAAGCCTGGTGAG---CAGATGAGCCTGCTTTCCAGATGCACAGGCCAAAATCTCCCTGTACGGGTAGACCATAATGCCAT-ATTCTCTG-CCTGAGTCTATGC--AAAGTTAAACCAATTTTGTTCCCA--GAAAAATCTCCAAAAATGAGTCAAACTATTTTCTGGGAGTGTTGCTGCAATACTGACTTATCTCACCAGGTAGCAAGGTCATAGAATGGTCAGAGGCATC-TATACATTAAACTGGACAGATATGTAAATTCTAACAACACTTGCTTTAAAAAGAATCT
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8642529 579 -   9938236 TTGTTAGAAAGGATAATTTGTGGCTGGCTGACTGAGTGAAACAATTACAGTCAGCAC-ACTTCATTTTCCCCTGGTCTTCAGTCTCTAAGTGTCACCGTTGAATTAACAGTCCATGACTTTTCAGAGTTA-CTGGGGGACACTGGTTGATGTCTTCCTTCTTCCTCATGATGATTTTGATTGTCTGCAAATAAATTCAGAAAAGCAGGTCACACATTAAGCAAATCACA-TATAC---------------------GTATGACCAAATCAGGGTCTGATCACAGCAGCAAGACACAAACGTGCTCAGGCTTATGCTGTGGCCTCTGTCGGAATGACTCTGAGATGCCACGGGTTCAATCCTGCCAGGAGTAGATGAGCCTGCTATCCGGACCTCTGGGGCAAAATATCCCTCAACTAGTCGATCATAATCTTAC-ATCCTCTGACCTGTCT-TGCGA--ACAGGTAAACAAACTTTTCCCTGA--A-A---TCTTCAGGAACTGGC-----------CTAGAAGTGTTGCTGAAATA--GAGTTCTCTCATTGGGTATCACAGTTGTTGAGTGATTAAAGAAACT-TACAAACATTACTGGACTGGTGGAAGAATTCTATAAACCCT-----------------
i otoGar3.GL873592                C 0 C 0
e calJac3.chr18                     3627377   0 +  47448759 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=34762.000000
s hg38.chr1_KI270711v1_random         17345 4 +     42210 GTGA
s panTro5.chr1                    208008063 4 - 228573443 GTGA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208142085 4 - 229774977 GTGA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3806464 4 -   8455952 GTGA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    267836 4 +    297174 GTGA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103757114 4 - 225584828 GTGA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211832688 4 + 227556264 GTGA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11409963 4 -  14060431 GTGA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1821430 4 -   2461138 GTGA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1020444 4 -   1280666 GTGA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             505628 4 -   1325925 GTGA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3738407 4 -   3775709 GTGA
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2805610 4 -   4070394 GTGA
i saiBol1.JH378257                I 495 C 0
s cebCap1.NW_016108146v1             265889 4 +    407294 GTGa
i cebCap1.NW_016108146v1          C 0 I 782
e otoGar3.GL873592                  8643108 0 -   9938236 C
e calJac3.chr18                     3627377 0 +  47448759 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=416422.000000
s hg38.chr1_KI270711v1_random         17349 73 +     42210 tttgggaggccaagacaggtgaatcatttgaggtcatgagttcaggactaccctggccaatatggggaaaccc
s panTro5.chr1                    208008067 73 - 228573443 tttgggaggtcaaggaaggtgaatcatttgaggtcatgagttcaagaccagcctggccaacatgggggaaccc
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208142089 73 - 229774977 tttgggaggtcaaggaaggtgaatcatttgaggtcatgagttcaagaccagcctggccaacatgggggaaccc
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3806468 73 -   8455952 tttgggaggccaagacaggtgaatcatttgaggtcatgagttcaggactaccctggccaatatggggaaaccc
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    267840 73 +    297174 tttgggaggccgaggcagatgaatcatttgaggtcatgagttcaagaccaacctggccaatatggggaaaccc
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103757118 73 - 225584828 tttgggaggccaagacaggtgaatcatttcaggtcgtgagttaaagaccagcctggccaatatggggaaacct
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211832692 73 + 227556264 tttggaaggccaagacaggtgaatcatttgaggtcataagttcaagaccagcctggccaatatggggaaaccc
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11409967 73 -  14060431 tttggaaggccaagacaggtgaatcatttgaggtcataagttcaagaccagcctggccaacatggggaaaccc
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1821434 73 -   2461138 tttggaaggccaagacaggtgaatcatttcaggtcatgagttaaagaccagcctggccaatatggggaaacct
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1020448 73 -   1280666 tttgggaggccaagacaggtgaatcatttcaggtcatgagttaaagaccagcctggccaatatggggaaacct
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             505632 73 -   1325925 ttcgggaggccaaggcaggtgaatcatttgaggtcatgagttcaagatgaacctggccaatatggggaaactt
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3738411 73 -   3775709 ttcgggaggccaaggcaggtgaatcatttgaggtcacgagttcaagatgaacctggccaatatggggaaaccc
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2805614 73 -   4070394 TTTCAAaggacaaggtgggtgacaaatttaaggtctgctgttcaagaccagcctggccaatatggtgaaacct
i saiBol1.JH378257                C 0 C 0
s otoGar3.GL873592                  8643108  5 -   9938236 --------------------------------------------------------------------AACCC
i otoGar3.GL873592                C 0 C 0
e calJac3.chr18                     3627377  0 +  47448759 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e cebCap1.NW_016108146v1             265893 782 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=1007939.000000
s hg38.chr1_KI270711v1_random         17422 179 +     42210 tgtctctactaaaaatacaaaaattagccagatgtgatgttgtgcacctgtggtcccagcaactcaggaggctgaggcaggagaatcacttgaatctgggaggcagaggttgcaccaagccaagatggtgcaactgcactctagcctgggtgacagagcaagactccatcgcaaaaaaa
s panTro5.chr1                    208008140 179 - 228573443 cgtctctaataaaaatacaaaaattagccagatgtggtgctgagcacctgtggtaccagtgactcaggaggctgaggcaggagaaccacttcaacctgggaggtggaagttgcagcaagccaaaatggagccactgcactccagcctgggtgacagagccagactccatcacaaaaaaa
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208142162 179 - 229774977 cgtctctaataaaaatacaaaaattagccagatgtggtgctgagcacctgtggtaccagtgactcaggaggctgaggcaggagaatcacttcaacctgggaggtggaagttgcagcaagccaaaatggagccactgcactccagcctgggtgacagagccagactccatcacaaaaaaa
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3806541 178 -   8455952 tgtctctactaaaaatacaaaaattagccagatgtgatgttgtgcacctgtggtcccagcaactcaggaggctgaggcaggagaatcacttgaatctgggaggcagaggttgcaccaagccaagatggtgccactgcactccagcctgggtgacagagc-agactccatcgcaaaaaaa
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    267913 179 +    297174 catctctactaaaaatacaaaaattagccatatgtggtggtgtgcacctgtggtcccagctactcaggaggctgaggcaggagaatcatttgaatctgggaggcagaggttgcacaaagccaagatggtgccactgcactccagcctgggtgacagagcaagactccaacgcaaaaaaa
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103757191 172 - 225584828 ggtctctactaaaaatacaaaaattagccagatgcagtggtgtgcacctgtggtcccagctactcaggaggctgaggcaagagaatcacctgaatctgggaggcagaggttgcaccaagccaagatggtgacatggcactccagtctgggtgacagagcaagactccattgc-------
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211832765 179 + 227556264 cgtctctactaaaaatacaaaaattagccagatgtggtgatgtgcacctgtgatcccatttactcaggagactgaggcaggagaatcacttgaatctcggaggcagaggttgcaccaagccaagatggtcccactgccctccagcctgggtgacagagcaagactccactgcaaaacaa
i macFas5.chr1                    C 0 I 81
s macNem1.NW_012017688v1           11410040 179 -  14060431 cgtctctactaaaaatataaaaattagccagatgtggtgatgtgcacctgtgatcccatttactcaggagactgaggcaggagaatcacttgaatctcggaggcagaggttgcaccaagccaagatggtcccactgccctccagcctgggtgacagagcaagactccactgcaaaaCAA
i macNem1.NW_012017688v1          C 0 I 22
s cerAty1.NW_012001440v1            1821507 172 -   2461138 ggtctctactaaaaatacaaaaattagccagatgcagtggtgtgcacctgtggtcccagctactcaggaggctgaggcaagagaatcacctgaatctgggaggcggaggttgcaccaagccaagatggtgacatggcactccagtctgggtgacagagcaagactccattgc-------
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1020521 171 -   1280666 ggtctctact-aaaatacaaaaattggccagatgtggtggtgtgcacctgtggtcccagctactcagaaggctgaggcaaaggaatcacctgaatctgggaggcggagattgcaccaagccaagatggtgacatggcactctagcctggatgacagagcaagactccattgc-------
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             505705 172 -   1325925 ggtctctactaaaaatacaaaaattagccagatgcagtggtgtgcacctgtggtcccagctactcaggaggctgaggcaagagaatcacctgaatctgggaggcggaggttgcaccaagccaagatggtggcatgacactccagtctgggtaacagagcaagactccattgc-------
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3738484 179 -   3775709 catctctactaaaaagacaaaaattagtcagatgtggttgtgtgcacctgtggtaccagctactcaagatgctgaggcaggagaatcacttgaatctgggaggtgaaggttgcagcaagccaagatggtgacactgcactccagcctgggtgacagagaaagactccatcgccaaaaaa
i colAng1.NW_012114988v1          C 0 I 10
s saiBol1.JH378257                  2805687 179 -   4070394 cgtctctactaaaaatacaaaaattagccaggtgtggtggtaagcacctgtggtcccagctactcaggaggcagaggcagcagaatcactggagtccgtcaagtggagactgcagtaagccaagacggtgccacagcactccagcctgggtgacacaaaaagactccaactcaaCAACG
i saiBol1.JH378257                C 0 C 0
e otoGar3.GL873592                  8643113   0 -   9938236 C
e calJac3.chr18                     3627377   0 +  47448759 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e cebCap1.NW_016108146v1             265893 782 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=-11627.000000
s hg38.chr1_KI270711v1_random         17601 28 +     42210 aaaaaaaaaaaaaaaaaaaa------aaaaaaaa
s panTro5.chr1                    208008319 34 - 228573443 aaaaaaaaaaaagaaagaaaGAGAAGAAAAAGAA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208142341 27 - 229774977 aaaaaaaaagaaagagaag-------aaaaAGAG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3806719 10 -   8455952 aa------------------------aaaaaaaa
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    268092 19 +    297174 aaaaaacaaaa---------------aaaacaaa
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103757363  8 - 225584828 --------------------------aacaacaa
i rheMac8.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11410241  8 -  14060431 --------------------------tgtgtata
i macNem1.NW_012017688v1          I 22 C 0
s cerAty1.NW_012001440v1            1821679  8 -   2461138 --------------------------aacaacaa
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1020692  8 -   1280666 --------------------------aacaacaa
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             505877  8 -   1325925 --------------------------aacaacaa
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3738673  8 -   3775709 --------------------------AGCACCAC
i colAng1.NW_012114988v1          I 10 C 0
s saiBol1.JH378257                  2805866  5 -   4070394 -----------------------------GCAAA
i saiBol1.JH378257                C 0 C 0
e otoGar3.GL873592                  8643113  0 -   9938236 C
e calJac3.chr18                     3627377  0 +  47448759 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e macFas5.chr1                    211832944 81 + 227556264 I
e cebCap1.NW_016108146v1             265893 782 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=9442.000000
s hg38.chr1_KI270711v1_random         17629 8 +     42210 aaaaaaaa
s panTro5.chr1                    208008353 8 - 228573443 AGAGAGAA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208142368 8 - 229774977 AGAGAGAA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3806729 8 -   8455952 aaaaaaaa
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    268111 8 +    297174 aaaaCGAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103757371 8 - 225584828 caaaaaaa
i rheMac8.chr1                    C 0 I 1
s macNem1.NW_012017688v1           11410249 8 -  14060431 catatatg
i macNem1.NW_012017688v1          C 0 I 1
s cerAty1.NW_012001440v1            1821687 8 -   2461138 caaaaaaa
i cerAty1.NW_012001440v1          C 0 I 1
s chlSab2.chr20_KE148050v1_random   1020700 8 -   1280666 caaaaaaa
i chlSab2.chr20_KE148050v1_random C 0 I 1
s manLeu1.NW_012105087v1             505885 8 -   1325925 caacaaaa
i manLeu1.NW_012105087v1          C 0 I 1
s colAng1.NW_012114988v1            3738681 8 -   3775709 CAACAACA
i colAng1.NW_012114988v1          C 0 I 1
s saiBol1.JH378257                  2805871 5 -   4070394 CAATA---
i saiBol1.JH378257                C 0 C 0
s otoGar3.GL873592                  8643113 8 -   9938236 AAAATGAA
i otoGar3.GL873592                C 0 C 0
e calJac3.chr18                     3627377 0 +  47448759 C
e rhiBie1.NW_016816432v1             110625 21106 +    307276 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e macFas5.chr1                    211832944 81 + 227556264 I
e cebCap1.NW_016108146v1             265893 782 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=-20529.000000
s hg38.chr1_KI270711v1_random         17637 3 +     42210 --TCC
s panTro5.chr1                    208008361 3 - 228573443 --TCT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208142376 3 - 229774977 --TCT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3806737 3 -   8455952 --TCC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    268119 3 +    297174 --TCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103757380 2 - 225584828 --CT-
i rheMac8.chr1                    I 1 C 0
s macNem1.NW_012017688v1           11410258 2 -  14060431 --gt-
i macNem1.NW_012017688v1          I 1 I 20
s cerAty1.NW_012001440v1            1821696 2 -   2461138 --TC-
i cerAty1.NW_012001440v1          I 1 I 1
s chlSab2.chr20_KE148050v1_random   1020709 2 -   1280666 --TC-
i chlSab2.chr20_KE148050v1_random I 1 I 1
s manLeu1.NW_012105087v1             505894 2 -   1325925 --TC-
i manLeu1.NW_012105087v1          I 1 I 1
s colAng1.NW_012114988v1            3738690 2 -   3775709 --TC-
i colAng1.NW_012114988v1          I 1 I 1
s rhiBie1.NW_016832643v1                324 2 -      1152 --TC-
i rhiBie1.NW_016832643v1          n 21106 I 1
s saiBol1.JH378257                  2805876 1 -   4070394 ---C-
i saiBol1.JH378257                C 0 C 0
s otoGar3.GL873592                  8643121 3 -   9938236 TCT--
i otoGar3.GL873592                C 0 C 0
e calJac3.chr18                     3627377 0 +  47448759 C
e papAnu3.chr1                    201381510 16767 - 220367699 I
e macFas5.chr1                    211832944 81 + 227556264 I
e cebCap1.NW_016108146v1             265893 782 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=172369.000000
s hg38.chr1_KI270711v1_random         17640 27 +     42210 ACGATGCTACAAAGAAACATTGGATCA
s panTro5.chr1                    208008364 24 - 228573443 GTGATGCTACA---AAACATTGCATCA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208142379 24 - 229774977 ATGATGCTACA---AAACATTGCATCA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3806740 27 -   8455952 ACGATGCTACAAAGAAACATTGGATCA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    268122 27 +    297174 ATGATGCTACAAAGAAACATTGGATCA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103757382 27 - 225584828 ATGATGCTAAAAAGAAACACTGGATCA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211833025 27 + 227556264 ATGATGCTACAAAGAAACATTAGATCA
i macFas5.chr1                    I 81 C 0
s macNem1.NW_012017688v1           11410280 27 -  14060431 ATGATGCTACAAAGAAACATTAGATCA
i macNem1.NW_012017688v1          I 20 C 0
s cerAty1.NW_012001440v1            1821699 27 -   2461138 ATGACGCTAAAAAGAAACACTGGATCA
i cerAty1.NW_012001440v1          I 1 C 0
s chlSab2.chr20_KE148050v1_random   1020712 27 -   1280666 ATGATGCTACAAAGAAACACTGGATCA
i chlSab2.chr20_KE148050v1_random I 1 C 0
s manLeu1.NW_012105087v1             505897 27 -   1325925 ATGATGCTAAAAAGAAACACTGGATCA
i manLeu1.NW_012105087v1          I 1 C 0
s colAng1.NW_012114988v1            3738693 27 -   3775709 ATGATGCTACAAAGAAACATTGAATCA
i colAng1.NW_012114988v1          I 1 C 0
s rhiBie1.NW_016832643v1                327 27 -      1152 GTGACACTACAAAGAAACATTGGATCA
i rhiBie1.NW_016832643v1          I 1 C 0
s saiBol1.JH378257                  2805877 27 -   4070394 GTGATGCTACGAAGAAAAATCAGACAG
i saiBol1.JH378257                C 0 C 0
s otoGar3.GL873592                  8643124 22 -   9938236 GTGGTGTTTCACAGAAACATTG-----
i otoGar3.GL873592                C 0 C 0
e calJac3.chr18                     3627377  0 +  47448759 C
e papAnu3.chr1                    201381510 16767 - 220367699 I
e cebCap1.NW_016108146v1             265893 782 +    407294 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=113464.000000
s hg38.chr1_KI270711v1_random         17667 15 +     42210 GCCATTGCATTGACA
s panTro5.chr1                    208008388 15 - 228573443 GCCATTGCATTGATG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208142403 15 - 229774977 GCCATTGCATTGACA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3806767 15 -   8455952 GCCATTGCATTGACA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    268149 15 +    297174 GCCATTGCATTGATG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103757409 15 - 225584828 GCCATTGCACTGATG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211833052 15 + 227556264 GCCATTGCCTTGATG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11410307 15 -  14060431 GCCATTGCCTTGATG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1821726 15 -   2461138 GCCATTGCACTGATG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1020739 15 -   1280666 GCCATTGCACTGATG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             505924 15 -   1325925 GCCGTTGCACTGATG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3738720 15 -   3775709 GCTATTGCATTGATG
i colAng1.NW_012114988v1          C 0 C 0
s rhiBie1.NW_016832643v1                354 15 -      1152 GCTATTGCATTGATG
i rhiBie1.NW_016832643v1          C 0 n 0
s saiBol1.JH378257                  2805904 15 -   4070394 GCCATTGCACTGACG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             266675 15 +    407294 GCCATTGCACTGATA
i cebCap1.NW_016108146v1          I 782 C 0
s otoGar3.GL873592                  8643146  5 -   9938236 ---------CTCAT-
i otoGar3.GL873592                C 0 C 0
e calJac3.chr18                     3627377  0 +  47448759 C
e papAnu3.chr1                    201381510 16767 - 220367699 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=3953370.000000
s hg38.chr1_KI270711v1_random         17682 569 +     42210 GGGTGGAGAACCAGGGTCCAGCCTTGCTTTATGGAAATATATCAGCAAAGTAAA-GAAGAAAAGTTTCCGTCCTGATTTCAGGGTGACTGTGCAGCTAA--------G-CAAGCTGACTTAAAGGAGATCCAGATGAAAGCTGAGAGCAGTGAAGCCTGGGGAACAATATTTCCAAATACAAAGGCAAGGCTGCCAGCTTCCTGAAACAGGCATAGAAACTCCATGGACATTGTTCAGGGACA--GATGACTTAATCACAGATGACAAGAGATACTGAATCGAAGCTAGGAGGCCTGACAGATACTGCCTGTGCACCTCCTGCACTCAGGTGACTATGAGATTGTCACACTTGCCTGGGGTCGAGTAACTTGATACTGGGGACTGGCAGACAAAGGCATGACATTAGCTGAGAAGGACAAAAAAACTC---------CCTGATA--TC--TGTTTAGAAACCCATCATAG-TTTTTTATTCAAATGAATTTGTGTTTATAGAGCCTGTCTTCAGAGTTTATCTTCCTCAGCCTAGAGAGAGGTATGAGACACAAGGAAAACAGAGGCTACCTGGGATAATGTGTACAGCATCCTC
s panTro5.chr1                    208008403 569 - 228573443 GGGTGGAGAACCAGGGTCCAGCCTTGCTTTATGGAACTATATCAGCAAAGTAAA-AAAGAAAAGTTTCTGTCCTGATTTCAAGGTGACTGTGCAGCTAA--------C-CAAGCAGACTTAAAGGAGATCAAGATTAAAGCTGAGAGCAGTGAAGCCTGGGGAACAATATTTCCAAACACAAAGGCAAGGCTGCCAGTCGCCTTAAAAAGGCAGAAAAATTTCATGGACATTGTTCAGGGACA--GACGACTTAATCACAGGTGACAAGAGATACTGAATCAAAGGTACGAGGCCTCACAGATACTTCCTGTGTACCTCCTGcactcaggtgactatgagattgtcacacttgtctggggTCCAGTAACTTGACACTGGGGACTGTGAGACAAAGGCATGACATGAGCTGAGAAGGACAGAAAACCTC---------CCTGATATCTC--TGTTAAGAATCCCATAATAG--ATTTTATTAAAACCAATCTGTGTGTATAGAGCCTGTCTTCAGAGTTTATATTCCTCAGCATAGGAAAAGGTGTGAGACAC-AGGAAAATAGAGGCTACCTGGGATAATGCATACAGCATCCAA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208142418 569 - 229774977 GGGTGGAGAACCAGGGTCCAGCCTTGCTTTATGGAACTATATCAGCAAAGTAAA-AAAGAAAAGTTTCTGTCCTGATTTCAAGGTGACTGTGCAGCTAA--------C-CAAGCAGACTTAAAGGAGATCAAGATTAAAGCTGAGAGCAGTGAAGCCTGGGGAACAATATTTCCAAACACAAAGGCAAGGCTGCCAGTCGCCTTAAAAAGGCAGAAAAATTTCATGGACATTGTTCAGGGACA--GACGACTTAATCACAGGTGACAAGAGATACTGAATCAAAGGTACGAGGCCTCACAGATACTTCCTGTGTACCTCCTGCACTCAGGTGACTATGAGATTGTCACACTTGTCTGGGGTCCAGTAACTTGACACTGGGGACTGTGAGACAAAGGCATGACATGAGCTGAGAAGGACAGAAAACCTC---------CCTGATATCTC--TGTTAAGAATCCCATAATAG--ATTTTATTAAAACCAATCTGTGTGTATAGAGCCTGTCTTCAGAGTTTATATTCCTCAGCATAGGAAAAGGTGTGAGACAC-AGGAAAATAGAGGCTACCTGGGATAATGCATACAGCATCCAA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3806782 567 -   8455952 GGGTGGAAAACCAGGGTCCAGCCTTGCTTTATGGAAATATATCAGCAAAGTAAA-GAAG--AAGTTTCCGTCCTGATTTCAGGGTGACTGTGCAGCTAA--------G-CAAGCTGACTTAAAGGAGATCCAGATGAAAGCTGAGAGCAGTGAAGCCTGGGGAACAATATTTCCAAATACAAAGGCAAGGCTGCCAGCTTCCTTAAACAGGCATAGAAACTCCATGGACATTGTTCAGGGACA--GATGACTTAATCACAGATGACAAGAGATACTGAATCGAAGCTAGGAGGCCTGACAGATACTGCCTGTGCACCTCCTGCACTCAGGTGACTATGAGATTGTCACACTTGCCTGGGGTTGAGTAACTTGATACTGGGGACTGGCAGACAAAGGCATGACATTAGCTGAGAAGGACAAAAAAACTC---------CCTGATA--TC--TGTTTAGAAACCCATCATAG-TTTTTTATTCAAATGAATTTGTGTTTATAGAGCCTGTCTTCAGAGTTTATCTTCCTCAGCCTAGAGAGAGGTATGAGACACAAGGAAAACAGAGGCTACCTGGAATAATGTGTACAGCATCCTC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    268164 578 +    297174 GGGTGGAGAACCAGGGTCCAGCCTTGCTTTATGAAAATATATCAGCAAAGTAAA-GAAG-AAAGTTTCCTTCCCAATTTCAAGGTGACTGTGCAGCTAAGTAGTTAGG-TAAGCTGACTTAAAGGAGATCGAGATTAAAGCTGAGAGCAGTGAAGCCTGGGGAACAATATTTCCAAATACACAGGAAAATCTGCCAGCTTCCTTAAAAAGGCATAGAAACTCCATGGACATTGTTCAGGGACA--GATGACCTAATTACAGGTGACAAGAGATGCTAAGTCGAAGCTAGGAGGCCTGACAGATACTTCCTGTGAACCTCCTGCACTCAGGTGACTATGAGATTGTCACACTTGCTTGGGGTCCAGTAACTTGATACTGGGGACTGGCAAACAAAGCCATGACATGAGCTGAGAAGGACACAAAAACTC---------CTTGATATCTG--TGTTTAGAATCCAATCCTAG-TTTTCTATTCAAACCAATTTGTGTATATAGAGCCTGTCTTCAGAGTTTATCTTCCTCAGCCTAGAAAGAGGTATGAGACACAAGGAAAATAGAGGCAACCTGGGATAATGTGTACAGCATCCTC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103757424 566 - 225584828 GGGTGGAGAAACAGGGTCCAGCCTTGCTTTATGGAAATATATCAGCAAAGTAAA-GAAGAAAATTTTCCGTCCTGATTTCAGGGTGACTGTGCTGCTAA--------G-CAAGCTGACTTAAAGGAGATCAAGATTAAAGCTGAGAGCAGTGAAGCCTAGGGATCAATATTTCCAGCTACAAAGGCAAGGCTGCCAGCTTCCTTAAAAAGGCATAGAAACTCCATGAACATTGTTCAGGGACA--GATGACTTAATCGCAGATGACAAGAGATACTGAATCGAAGCTAGAAGGCCTGACAGATACTTCCTGTGTACCTCCTGCACTCAGGTGACTATGAGATTGTCATATCTGCATGGGGTCCAGTAACTTGATACTGGGGACTGGCAGACAAAGGCATGACATGAGCTGAGAAGGAC-AAAAAACTC---------CCTGATA--TC--TGTTTAG-ATGCCACCGTAG--GTTTTATTCAAAACAATTTGTGTGTATAGAGCCTGTCTTCAGAGTTTACCTTCCTCAGCCTAGACAGAGGCAGGAGACACAAGGAAAACAGAGGCTACCTGGGATAATATGTACAGCATCTGC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211833067 569 + 227556264 GGGTGGAGAAACGGGGTCCAGCCTTGCTTTATGGAAATACATCAGCAAAGTAAA-GAAGAAAAGTTTCCATCCTGATTTCAGGGTGACTGTGCCGCTAA--------G-CAAGCTGACTAAAAGGAGATCAAGATTAAAGCTGAGAGCAGTGAAGCCTAGGGAACAATATTTCCAGATACAAAGGCAAGGCTGCCAGCTTCCTTAAAAAGGCATAGAAACTCCATGAACATTATTCAGGGACC--AGTGACTTAATCAAAGATGACAAGAGATACTGAATCGAAGCTAGGAGGCCCGACAGATATTTCCTGTGCACCTCCTGCACT-AGGTGACTATGAGATTGTCAAACTGGCATGGGGTCCAGAAAGTTCATACTGGGAACTGGCAGACAAAGGCATGACATGAGCTGAGAAGGACAAAAAAACTC---------CCTGATA--TC--TTTTTAGAATCCCATCGCAGTTTTTTTATTCAAACCAATTTGTGTGTATAGAGCCTGTCTTCAGAGTTTATCTTCCTCAGCCTAGACAGAGGCAGGAGACACAAGGAAAACAGAGGCTACCTGGGATAATATGTACAGCATCCTC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11410322 569 -  14060431 GGGTGGAGAAACGGGGTCCAGCCTTGCTTTATGGAAATACATCAGCAAAGTAAA-GAAGAGAAGTTTCCATCCTGATTTCAGGGTGACTGTGCCGCTAA--------G-CAAGCTGACTAAAAGGAGATCAAGATTAAAGCTGAGAGCAGTGAAGCCTAGGGAACAATATTTCCAGATACAAAGGCAAGGCTGCCAGCTTCCTTAAAAAGGCATAGAAACTCCATGGACATTGTTCAGGGACA--CATGACTTAATCACAGGTGACAAGAGATACTGAATCGAAGCTAGGAGGCCCGACAGATATTTCCTGTGCACCTCCTGCACT-AGGTGACTATGAGATTGTCAAACTGGCATGGGGTCCAGAAAGTTCATACTGGGAACTGGCAGACAAAGGCATGACATGAGCTGAGAAGGACAAAAAAACTC---------CCTGATA--TC--TTTTTAGAATCCCATCGCAGTTTTTTTATTCAAACCAATTTGTGTGTATAGAGCCTGTCTTCAGAGTTTACCTTCCTCAGCCTAGACAGAGGTAGGAGACACAAGGAAAACAGAGGCTACCTGGGATAATATGTACAGCATCCTC
i macNem1.NW_012017688v1          C 0 I 4419
s cerAty1.NW_012001440v1            1821741 566 -   2461138 GGGTGGAGAAACAGGGTCCAGCCTTGCTTTATGGAAATATATCAGCAAAGTAAA-GAAGAAAATTTTCCGTCCTGATTTCAGGGTGACTGTGCAGCTAA--------G-CAAGCTGACTTAAAGGAGATCAAGATTAAAGCTGAGAGCAGTGGAGCCTAGGGATCAATATTTCCAGATACAAAGGCAAGGCTGCCAGCTTCCTTAAAAAGGCATAGAAACTCCATGAACATTGTTCAGGGACA--GATGACTTAATCGCAGATGACAAGAGATATTGAATCGAAGCTAGAAGGCCTGACAGATACTTCCTGTGTACCTCCTGCACTCAGGTGACTATGAGATTGTCACATCTGCATGGGGTCCAGTAACTTGATACTGGGGACTGGCAGACAAAGGCATGACATGAGCTGAGAAGGAC-AAAAAACTC---------CCTGATA--TC--TGTTTAG-ATGCCACCGTAG--GTTTTATTCAAAACAATTTGTGTGTATAGAGCCTGTCTTCAGAGTTTACCTTCCTCAACCTAGACAGAGGCAGGAGACATAAGGAAAAGAGAGGCTACCTGGGATAATATGTACAGCATCTGC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1020754 566 -   1280666 GGGTGGAGAAACAGGGTCCAGCCTTGCTTTATGGAAATATATCAGCAAAGTAAA-GAAGAAAATTTTCCGTCCTGATTTCAGGGTGACTGTGCAGCTAA--------G-CAAGCTGACTTAAAGGAGATCAAGATTAAAGCTGACAGCAGTGAAGCCTAGGGAACAATATTTCCAGATGCAAAGGCAAGGCTGCCAGCTTCCTTAAAAAGGCATAGAAACTCCATGAACATTGTTCAGGGACA--GATGACTTAATCGCAGATGACAAGAGATACTGAATTGAAGCTAGAAGGCCTGACAGATACTTCCTGTGTACCTCCTGCACTCAGGTGACTATGAGATTGTCACACCTGCATGGGGTCCAGTAACTTGATACTGGGGACTGGCAGACAAAGGCATGACATGAGCTGAGAAGGAC-AAAAAACTT---------CCTGATA--TC--TGTTTAG-ATGCCACCGTAG--GTTTTATTCAAAACAATCTGTGTGTATAGAGCCTGTCTTCAGAGTTTACCTTCCTCAGCCTAGACAGAGGCAGGAGACACAAGGAAAAGAGAGGCTACCTGGGATAATATGTACAGCATCTGC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             505939 566 -   1325925 GGGTGGAGAAACAGGGTCCAGCCTTGCTTTATGGAAATATATCAGCAAAGTAAA-GAAGAAAATTTTCCGTCCTGATTTCAGGGTGACTGTGCAGCTAA--------G-CAAGCTGACTTAAAGGAGATCAAGATTAAAGCTGAGAGCAGTGAAGCCTAGGGATCAATATTTCCAGATACAAAGGCAAGGCTGCCAGCTTCCTTAAAAAGGCATAGAAACTCCATGAACATTGTTCAGGGACA--GATGACTTAATCGCAGATGACAAGAGATATTGAATCGAAGCTAGAAGGCCTGACAGATATTTCCTGTGCACCTCCTGCACTCAGGTGACTATGAGATTGTCACATCTGCATGGGGTCCAGTAACTTGATACTGGGGACTGGCAGACAAAGGCATGACATGAGCTGAGAAGGAC-AAAAAACTC---------CCTGATA--TC--TGTTTAG-ATGCCACCGTAG--GTTTTATTCAAAACAATTTGTGTGTATAGAGCCTGTCTTCAGAGTTTACCTTCCTCAACCTACACAGAGGCAGGAGACATAAGGAAAAGAGAGGCTACTTGGGATAACATGTACAGCATCTGC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3738735 565 -   3775709 GGGTGGAGAACCAGGGTCCAGCCTTGCTTTATGGAACTATATTAGCAAACTAAA-CAAGAAAAGTTTCTGTCCACATTTCAATGTGACTGTGCAGCTAA--------C-CAAGCTGACTTAAAAGAGATCAAGATTAAAGCTGAGAGTAGTGAAGCCTGGGGAACAATATATCCAAATACAAAGGCAAGGCTGCCAGTCTTCTTCAAAAGGCATAGAAACTCCATGGACATTGTTTGGGGACA--CATGACTTAATCACAGGTGACAAGAGATAG------GAAGCTAGGAAGCCTCACAGTTACCTCCCATGCACCTCCTGCATTCAGGTGACTATGAGGTTGTCACACTTGCCTGGGGTCCAGTAACTTCACACTGGGGACCAGGAGACAAAGGCATGACATGAGCTGAGAAGGACAGAAAACCTC---------CCTGATA--TCTGTGTTTAGAATCCCATCGTAG-ATTTTTATTTAAACCAACTTGTGTATATAGAGTCTGTCTTCGGGGTTATACTTCCTCAGCACAGAAAGAGGTATGAGACACAAGGAAAATAGATGCTACCTGGGATAATGAAGACAATGTCCTC
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2805919 570 -   4070394 GGGCGGAGAGCCGGGGT-GAGCCTTGCTTTACGGAAACATATCAGCAAGGTAAA-GAGGAAATGTTTTCATCCTGCTTTCAAGGTGACTGTGCAGCTAA--------G-CAAGCTGACTTAAAAGAGATCAAGACTGAAGCTCGGAGCAGTGAAACCTGGGGAACAATATCTCCAAATAAATAGGCAAGGCTCCCAGTTTCCTTAAAAATCAATGGAAACTCCACAAACATCATTCAGGGACA--CATGACATCATTAGAGGTGATGAGAGATACCGACTCCAAGCTGGGACACCTGACAGACACCTACTGTACACCTCCTGCACTCAGGTGACCATGAGTTTGTCACACTGGCCTGGGGTCTGGTAACTTGATACTTGGGCCTGGGAGACAAACGCATGGCATGAGCTGAGGAAGAGAGAAAAATTC---------CCTGATA--TCTGTGTTTACTATCCCATCACAC-ATTTTTATTCAAACCGATTTGTGTGTATAGAGCCTGTCTTCTGAGGTGATCTTCCACAGCCTAGACAGAGGTACCAAAAACAAGGAATGGAGAGGTCACCTGAAAGAATGATCAGAGCATCCTC
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             266690 570 +    407294 GGGTGGAGAGTCGGGCT-GAGCCTTGCTTCACGGAAACACATCGGCAAGGTAAA-GAGGAAATGTTTCCATCCTGGTTTCAAGGTGACTGTGCAGCTAA--------G-CAAGCTGACTCAAAAGAGATCAAGACCGACGCTCCGAGCAGTGACACCTGGGGAACAATATCGCCAAACAAATAGGCAAGGCTCCCAGTTTCCTTAAAAAGAAATGGAAACTCCATGAACATCGTTCAGGGACA--GGTGACATAATGACAGGAGATGAGAGATACCAACTCAAATCTAGGAGACCTGACAGACACCTACTGTACACCTCCTGCACTCAGGTGACCATGAGTTTGTCACCGTGGCCTGGGGTCTGGTAACTTGATACTTGGGCCTGGGAGACAAATGCATGGCATGAGCTGAGGAAGAGATAAAAATTC---------CCTGATA--TCTGTGTTTAGTATCCCATGATAG-GTTTTTATTCAAACCGATTTGTGTGTATAGAGCCTGTCTTCAGAGTTGATCTTCCTCAGCCTAGTCTTAGGTACCAAAAACAAGGAATGTAGGGGTCACCTGAAAGAATGATTAGAGCATCCTC
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8643151 536 -   9938236 ---------ATAAAGGCCCAGTCTTGCTTCATGAAA-------AGCAAGATAAATGCAGATGTGTGCATGTGCTCAATTTAAGCTGACTGCTTAGCTAA--------GAAAAGCCAATTT--AGGAGATAGAGACTGGGGCTGACAGCAGTGAAACCAGGGTGACAGCATCTCCAAATATATAGGCAAGGCTGCTGGTGGTCTGGGACAGGCCTAGAGACTTCGTGGATATTGTGCAGAAACATGAATTACATGATTGCAAGTGGCAAGAGACATTAGATCCACATGAGTAGATTTGATAGACATCAATTGTATACCTCCTGTATACAGGCAAGTATGAGCTTATCACAGCTGCCTGGGGTCCAATAACCTGACAGTGGGGCCAGGGAGACAAAGGCACGGCATAGGCTGAGGAAGAGAGGGAAGTGCCCTGACCCACCTGACA--TC--TGTTTAACATTCCACTTCTG--ATTCCATCCAA-------TACGTCTGCAGGGCCTGCCTTTGGAATAGACCTTACTAAGCCTAGACACAAGCATAGGCCAC-------------------TGGAAGAATAT-TGCTACTTCTTC
i otoGar3.GL873592                C 0 C 0
e calJac3.chr18                     3627377   0 +  47448759 C
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I

a score=332893.000000
s hg38.chr1_KI270711v1_random         18251 68 +     42210 CCATT-CAACATGAGAGGATGAGC------CAATG---------AGAGTTGAGTCGACTTTGTCTTCCTCAAATGTGATTT---TGG
s panTro5.chr1                    208008972 68 - 228573443 CCATT-CATCATGGGAGGATGAGT------CAATG---------AGAGTTGAGTCGACTTGGTCTTCCTCAAATGTGATTC---TGG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208142987 68 - 229774977 CCATT-CATCATGAGAGGATGAGT------CAATG---------AGAGTTGAGTCGACTTGGTCTTCCTCAAATGTGATTC---TGG
i panPan2.chr1                    C 0 I 4382
s gorGor5.CYUI01015145v1            3807349 68 -   8455952 CCATT-CAACATGAGAGGATGAGC------CAATG---------AGAGTTGAGTCGACTTTGTCTTCCTCAAATGTGATTT---TGG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    268742 68 +    297174 TCATT-CATCAGGAGAGGATGAAT------CAATG---------AGAGATGGATCAACTTTCTCTTCCTTAAATGTGATTT---TGG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103757990 68 - 225584828 CCACT-CATCATGAGAGGATGAGT------CAATG---------AAAGGTGAGTTGAATTTGTCTTCATCAAATGTGATCT---TGG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211833636 67 + 227556264 -CACT-CATCATGAAAGGATGAGT------CAATG---------AGAGTTGAGTCGACTTCATCTTCCACAAATGTGATCT---TGG
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1822307 68 -   2461138 CCACT-CATCATGAGAGGATGAGT------CAATG---------AAAGGTGAGTTGAATTTGTCTTCATCAAATGTGATCT---TGG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1021320 68 -   1280666 CCACT-CATCATGAGAGGATGAGT------CAATG---------AAAGGTGAGTTGAATTTGTCTTCATCAAATGTGATCT---TGG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             506505 68 -   1325925 CCACT-CATCATGAGAGGATGAGT------CAATG---------AAAGGTGAGTTGAATTTGTCTTCATCAAATGTGATCT---TGG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3739300 68 -   3775709 CCATT-CATCATGAGAGGATGAGT------CAATG---------AGACATGAGTTGACTTGGTCTTCTTCAAATGTGATTT---TGG
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2806489 77 -   4070394 -TACTACATCAGGAGATGATGGACTCTCTGCGACC---------AGTGCACATTCGACGTTGTCTTCCTCAAATGTGATTTCACTGG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             267260 77 +    407294 -CACTACATCATGAGATGATGGACTCTCGACAACC---------AGTGCAGAGTCGACCTTGTATTTCTCTATTGTGATTTCATTGG
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8643687 70 -   9938236 ---CT-CATCATGGTGGCAAGGTT------CACTGTCTACACCCAGAGCGCAGT-GACT---TCTTCCCCAAATGGGAATT---TGG
i otoGar3.GL873592                C 0 C 0
e calJac3.chr18                     3627377  0 +  47448759 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I

a score=449670.000000
s hg38.chr1_KI270711v1_random         18319 89 +     42210 -TTTTCCTATGTGGCTGGTTGGAGTCATAAGGGCCATGGCTATTTGAACAAGTGATGGCACATTCCTCCAGTGAGTCCTCAGGGACTTCC
s panTro5.chr1                    208009040 89 - 228573443 -TGTTCCCGTAAGGCTGGTTGGACTCACAAGGGTGGTGGCTATTTGAACAAGTGATGGCACACTCCTCCAGTGAGTCCTCAGGGACTTCC
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3807417 89 -   8455952 -TTTTCCTATGTGGCTGGTTGGAGTCATAAGGGCCATGGCTATTTGAACAAGTGATGGCACATTCCTCCAGTGAGTCCTCAGGGACTTCC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    268810 89 +    297174 -TGTTCCTGTGAGGCTGTTTGGAGTCACAAGGGCCATAGCTGTTTGAATAAGTGACGGCACATTCCTCCAGTGAGTCCTCAGGGACTTCC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103758058 89 - 225584828 -TATTCCTGTGTGGCTGGTTCGAGTCATAAGGGCCGTGGCTATTTGAATAAGTGACAGCACATTCCTCCAGTGAGTCCTCAGGGACTTCC
i rheMac8.chr1                    C 0 I 3178
s macFas5.chr1                    211833703 89 + 227556264 -TATTCCTGTGTGGCTGGTTCGAGTCATAAGGGCCGTGGCTATTTGAACAAGTGACGGCACATTCCTCCAGTGAGTCCTCAGGGACTTCC
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1822375 89 -   2461138 -TATTCCTGTGTGGCTGGTTGGAGTCACAAGGAACATGGCTATTTGAACAAGTGACAGCACATTCCTCCAGTAAGTCCTCAGGGACTTCC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1021388 89 -   1280666 -TATTCCTGTGTGGCTGGTTGGAGTCACAAGGAACATGGCTATTTGAACAAGTGATGGCACATTCCTCCAGTGAGTCCTCAGGGACTTCC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             506573 89 -   1325925 -TATTCCTGTGTGGCTGGTTGGAGTCACAAGGAACATGGCTATTTGAACAAGTGACAGCGCATTCCTCCAGTAAGTCCTCAGGGACTTCC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3739368 89 -   3775709 -TGTTGCTGTGAGGCTGGTTGGACTCACAAGGACCGTGGCTATTTGAACAAATGATGGCATATTCGTCCAGTGAGTCCTCAGATTCTTCC
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2806566 89 -   4070394 -TGTCTCCGTGAGGCTGGCTGGAGTCAGTCGGGCCATAGCTATTGGAAGCAGTGATGACACATTCCTTCAGGGAGTCTTCAGGGACTCTC
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             267337 89 +    407294 -TTTCTTTGTGAGGCTGGCTGGATTCAGTAGGGCCATAGCTATTTGAACGAGTGATGACACATTCCTCCAGTGAGTCTTCAGGGACTCTC
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8643757 81 -   9938236 GAGCTGCTGTAAGGCTGGTCCTAGTCA----GGCTGGGGCAAATTCAAAGAGTGAAAG-ATGCTCCTCCAGTGAATCC----AGGCCTCC
i otoGar3.GL873592                C 0 C 0
e calJac3.chr18                     3627377  0 +  47448759 C
e panPan2.chr1                    208143055 4382 - 229774977 I
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I

a score=583154.000000
s hg38.chr1_KI270711v1_random         18408 172 +     42210 TTTTCTTCAGCCTTCTGCATCTCCCTGATGAGCCAGGTGGGACAGAGATGACAGAAGATTAAACACAGAGGGATTGGACCCCATGGAGTCCTAGCTGGTTTTGACAGGCGGCATTAAGAGAGTGGTCCCAGAAAGCAAAATGGAGGTTCCCATTAAGAGGGAACATGCAATC
s panTro5.chr1                    208009129 172 - 228573443 TTTTCTTTAGCCTTCTGCACCTCCCTGATGAGCCAGGTGGGATAGAGATGACAGAAGACTAAACACAGAGGGATTGGACACCAGGGAGTGCTAGCTGGTTTTGACAGGAGGCATTAAGAGAGTGGTCCAAGAAAGCAAATAGGAGGATCCCTTTAAGAGGGAACAGGCAATC
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3807506 171 -   8455952 TTTTCTTCAGCCTTCTGCATCTCCCTGATGAGCCAGGTGGGACAGAGATGACAGAAGATTAAACACAGAGGGATTGGACCCCAGGGAGTCCTAGCTGGTTTTGACAGGCGGCATTAAGAGAGTGGTCCCAGAAAGCAAAATGGAGGTTCCC-TTAAGAGGGAACATGCAATC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    268899 171 +    297174 TTTCCTTCAGCCTTCTGCACCTCCCTGATGAGCCAGGTGGGATTGAGATGACAGAAGATTAGACACAGAGGGATTGGACCCCAGGGAGTCCTGGCTGGTTTTGACAGGAGGCA-TAAGAAAGTGGTCCCAGAAAGCAAACAGGAGGTTCCCTTTAAGAGGGAACGGGCAATC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211833792 172 + 227556264 CTTTCTTCAGCCTTCTGCACCTCCCTGATGAGCCAGGTGGGACAGAGAAGAAAGAAGATTAAACACAGAGGGATTGGACCCCAGGGAATCCTAGCTGGTTTTGACAGGAGGCATTAAGAGAGAGGCCCCAGAAAGCAAACAGGAGGTTCCCTTTAAGAAGTGACAGGCAATC
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1822464 172 -   2461138 CTTTCTTTGGCCTTCTGCACCTCCCTGATGAGCCAGGTGGGACAGAGAAGAAAGAAGATTAAACACAGAGGGATTGGACCCCAGGGAATCCTAGCTGGTTTTGGCAAGAGGCAAAAAGAGAGTAGTCCAAGAAAGCAAACAGGAGGTTCCCTTTAAGAAGTGACAGGCAATC
i cerAty1.NW_012001440v1          C 0 C 0
s manLeu1.NW_012105087v1             506662 172 -   1325925 CTTTCTTTGGCCTTCTGCACCTCCCTGATGAGCCAGGTGGGACAGAGAAGAAAGAAGATTAAACACAGAGGGATTGCACCCCAGGGAATCCTAGCTGGTTTTGGCAAGAGGCAAAAAGAGAGTAGTCCAAGAAAGCAAACAGGAGGTTCCCTTTAAGAAGTGACAGGCAATC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3739457 172 -   3775709 TTCTCTTCAGCCTTCTGCACCTCCCTGATGAGCCAGGTGGGATAGAGATGTCAGAAGATTAAACACAGAGGGATTGGACCCCAGGGAGTCCTAGCCAGTTTTCATAGGAGGCATTAAGACAGTGCTCACAGAAAGGAAACAGGAGGTTCCCTTTAAGAGGAAACAGGCAATC
i colAng1.NW_012114988v1          C 0 C 0
s saiBol1.JH378257                  2806655 171 -   4070394 CTGATATCAACCTTTGGCACCTCCCCGATGAGCCTGACGGTATAGAGATGACAAAAGATTCAACAAAGGGGGATTGGACCCCAGGAAGTCCTGGCTGGTTTTCACAGGAGGAA-TAAGAGAGGGGTGTCAGAAGGCAAATGGGAGGTTCCCTTTGAGAGGAAACAGGCAATC
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             267426 171 +    407294 TTGACAACAACCTTTGGTGCCTCCCTGATGAACCAGATGGGATAGAGATGATAGAAGATTAAACAAAGCGGGATTGGACCCCAGGAAGTCCTAGCTGGTTTTCACAAGAGGAA-TAAGAGAGGGGTCTCAGAAGGCAAATGGGAAGTTCCCTTTGAGAGGAAACAGGCAATC
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8643838 144 -   9938236 -CTCCCTCCACCTCCTGCAGCT-CCTGATGAGCCGGGGTGGGGAG-GATGACAAGAGATTACACCAAGAGGGATGAGACACCAGGGAG-----------TTTGGTAGGTGTCAT---GAGAGTGACCTCAGAAAGCAAAGGTGGGG--------AGGGGGGAATGTGTG---
i otoGar3.GL873592                C 0 C 0
e calJac3.chr18                     3627377   0 +  47448759 C
e panPan2.chr1                    208143055 4382 - 229774977 I
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e rheMac8.chr1                    103758147 3178 - 225584828 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I

a score=655267.000000
s hg38.chr1_KI270711v1_random         18580 155 +     42210 CTGTTCTCTCTGCAACAGAGCATGGCTGCCATGGG-AACCAGAGAGGAAGAGAGCAGCTGGTGTTCATTGCACTGGACAGATAGGAGCTGAGGAGGATGAAGACTCAGCTATCCCTGTACGGTGCAGACATGACACTCGGCACACATAGAGAAACA
s panTro5.chr1                    208009301 155 - 228573443 CTCTTCTCTCTGCAACAGAGCATGGCAGCCATGGG-AGCCAGAGAGGAAGAGAGCAACTGGTGTTCATTGCACTGGACAGATAGGAGCCGAGGAGGATGAAGACTCAGCTATCCCTGTATGGTACAGACATGACACCCACCACACACAGAGAAACA
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3807677 155 -   8455952 CTCTTCTCTCTGCAACAGAGCATGGCTGCCATGGG-AACCAGAGAGGAAGAGAGCAGCTGGTGTTCATTGCACTGGACAGATAGGAGCTGAGGAGGATGAAGACTCAGCTATCCCTGTACGGTGCAGACATGACACTCGGCACACATAGAGAAACA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269070 155 +    297174 CTCTTCTCTCTGCAGCAGAGCATGGCTGCCAAAGG-AGCCAGAGAGGAAGAGAGCAGCTGGTGTTCATTGCACTGGACAGATAGGAGGTGAGGTGGATGAAGACTCAGCTATCCCTGTACGGTACAGACATGACACTCGGCACACATAGAGAAACT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211833964 155 + 227556264 CTCTTCTCTCTGCAACAGAGCATGGCTGCCATGGG-AGCCAGAGAGGAAGAAAGCAACTCATGTTCACTGCACTGGAAAGACAGGAGCTGAGGAGGATGAAGACTCAGCTCTCCCTGTACAGTACAGACATGACACTCGGCGCACACAGAGAACCA
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1822636 149 -   2461138 CTCTTCTCTCTGCAACAGAGCATGGCTGCCATGGG-AGCCAGAGAGGAAGAGAGCAACTGGTGTTCACTGCACTAGAA----AGGAGCTGAGGAGGATGAAGACTCAGCTATCCCTGTACAGTACAGACATGACACTCAACACACACAGAGAG--A
i cerAty1.NW_012001440v1          C 0 C 0
s manLeu1.NW_012105087v1             506834 155 -   1325925 CTCTTCTCTCTGCAACAGAGCATGGCTGCCATGGG-AGCCAGAGAGGAAGAGAGCAACTGGTGTTCACTGCACTGGAAAGATAGGAGCTGAGGAGGATGAAGACTCAGCTATCCCTGTacagtacagacatgacactcggcacacacagagagaca
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3739629 152 -   3775709 CTCTTCTCTCTGCAACAGAGCATGGCTGCCATGGG-AGACAGAGAGGAAGAGAGCAACTGGTGTTCATC---CTGGACAGATAGGAGCTGAGGAGGATGAAGACTCAGCTATCCCTGTACGGAacagacacgacactcaccacacacagagaaaca
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3627377 155 +  47448759 CTGTCCCCTCTGCAACACAGTGTGGCTGCCATGGG-AACCGGAGAGAAAGACAGCAGCTGGTATTCCTTACACTGGGCAGAAAGGAGCCGAGAAGAAAAAAGACTCAGTTATCCCTGTATAATTCAGACACGGCACTCAGCACATACAAAGAACCA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2806826 150 -   4070394 --CTCCTCTATGCCACAGAGCATGGCTGCCACGGG-AACCGGAGAGAAAGAGAGCAGCTGATATTCATCACACTGGGCAGAAAGGAGCTGAGAAGAACAGAGACTCAGTTATCCCTGTATGATTCACACATGGCACTCTGCACATACAAAGA---A
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             267597 154 +    407294 --CTCCGCTCTGCAACACAGCATGGCTGCCATGGGAAACCGGAGAGGAAGAGAGCAGCTGGTATTCATCACACTGGGCAGAAAGGAGCTGAGAAGAGCAGAGACTCAGTTATCCCTGCATAATTGAGATACGGCACTCGGCACATACAAAGAACCG
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8643982 133 -   9938236 ----------------------TGGCTGTCATGGG-GACCAGAGAGGAAGGAAACAGTTGGTGCTCACTGCATGAGAAATACAGAAGTCCCTGGGGAAGGAGACTCAACCACACCTGCACAGCACAGTCTCAACGCGCAGCACACAGGGAGAACTG
i otoGar3.GL873592                C 0 C 0
e panPan2.chr1                    208143055 4382 - 229774977 I
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e rheMac8.chr1                    103758147 3178 - 225584828 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I

a score=371010.000000
s hg38.chr1_KI270711v1_random         18735 107 +     42210 TGACAGCTGCCGCACCCTGTGTCTAAGCTGGGTTATATTTCACATACTGTGGCCAAGCGAATGTGGGTTTTTGGCCCATCATAGATGCCAGAGAGGGTGTACCTCCT
s panTro5.chr1                    208009456 107 - 228573443 CAACAGCTGCCACACCCTGTGTCCAAGCTGGCTTGAGTTTCTCATACTGTGGCCAAGGGAATGCAGGCTTTCGGCCCATCATAGATGCCAGAGAGGGTGTGCCTCCT
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3807832 106 -   8455952 TGACAGCTGCCGCACCCTGTGTCTAAGCTGGGTTATATTTCACATACTGTGGCCAAGCGAATGCGGG-TTTTGGCCCATCATAGATGCCAGAGAGGGTGTGCCTCCT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269225 107 +    297174 CGACAGATGCCACACTCTGTGTCTATGCTGGGTTGAATTTCACGTACTGTGGCCAAGGGAATGCAGGCTTTTGGCCCACTGTAGATGCCAGAGAGGGTGTGCCTCCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834119 107 + 227556264 CAACAGCTGCCACACCCTGTGTCTAAGCTGGGTTGAATTTCACATACTGTGGCCAAGGGAATGCAGGCTTTGGGCCCATCCTAGATGCCAGAGAGGGTGCGCCTCCT
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1822785 107 -   2461138 CAACAGCTGCCACACCCTTTGTCTAAGCTGGGTTGAATTTCACACACTGTGGCCAAGGGAATGCAGGCTTTGGGCCCATCGTAGATGCCAGAGAGGGTGCGCCTCCT
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3739781 107 -   3775709 caacaGCTGCCACACCTTGTGTCTAAGTTGGGTTGAATTTCACATACTGTGGCCAAGGGAATGCAGGCTTTTGGTCCATCCTACATGCTAGAGACGGTGTGCCTCCT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3627532 106 +  47448759 CAACAGCTGCCACATCCTGTGTCAAAGTTGGGTTGAACTGAACATATTGTGGCCAAGGGAATACAGGCTTTTGGCCCATGGGAGACACCAGAGAGGGTGTG-CTTCT
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2806976 106 -   4070394 CAACAGCTGCCACACCCTGTGTCTGAGGTGGGTTGAACTGAACGAACTGTGGCCAAGGCAATGGAGGCTTTTGGTCCGTGGTAGACACCAGAGAGGGTGAG-ATTCT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             267751 105 +    407294 CGACAGCTGCCACACCCTGTGTCTATGTTGGGTTGAACTGAACATATTGTGGCCAAGGGATTGCAGGC-TTTGGCCCATAGGAGATGCCAGAGAAGGTGAG-ATTCT
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8644115 107 -   9938236 CAGCAGGTGCTCCACCACGTGTCTGAGTTGGGTTGGGTTTCACATACTGTGGCCAAGAGGATACGGTCCCTAGAGTGATGGTACACTCCAGAGATGGTGTGGTTTCT
i otoGar3.GL873592                C 0 I 1304
e panPan2.chr1                    208143055 4382 - 229774977 I
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e rheMac8.chr1                    103758147 3178 - 225584828 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I

a score=15510.000000
s hg38.chr1_KI270711v1_random         18842 3 +     42210 AGA
s panTro5.chr1                    208009563 3 - 228573443 AGA
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3807938 3 -   8455952 AGA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269332 3 +    297174 AGA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834226 3 + 227556264 AGA
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1822892 3 -   2461138 AGA
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3739888 3 -   3775709 AGA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3627638 3 +  47448759 AGA
i calJac3.chr18                   C 0 I 1
s saiBol1.JH378257                  2807082 3 -   4070394 AGA
i saiBol1.JH378257                C 0 I 1
s cebCap1.NW_016108146v1             267856 3 +    407294 AGA
i cebCap1.NW_016108146v1          C 0 I 1
s otoGar3.GL873592                  8645526 3 -   9938236 AGA
i otoGar3.GL873592                I 1304 C 0
e panPan2.chr1                    208143055 4382 - 229774977 I
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201381510 16767 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e rheMac8.chr1                    103758147 3178 - 225584828 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I

a score=1215.000000
s hg38.chr1_KI270711v1_random         18845 1 +     42210 T
s panTro5.chr1                    208009566 1 - 228573443 C
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3807941 1 -   8455952 T
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269335 1 +    297174 C
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834229 1 + 227556264 C
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1822895 1 -   2461138 C
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201398277 1 - 220367699 T
i papAnu3.chr1                    I 16767 I 137
s colAng1.NW_012114988v1            3739891 1 -   3775709 C
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8645529 1 -   9938236 C
i otoGar3.GL873592                C 0 C 0
e calJac3.chr18                     3627641 1 +  47448759 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cebCap1.NW_016108146v1             267859 1 +    407294 I
e saiBol1.JH378257                  2807085 1 -   4070394 I
e rheMac8.chr1                    103758147 3178 - 225584828 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I

a score=212250.000000
s hg38.chr1_KI270711v1_random         18846 56 +     42210 ATTCTTCATATGTTAC-CATCCATTAATTGTTCCTGAGTATTCAGTGTTACCTGGGG
s panTro5.chr1                    208009567 56 - 228573443 CTTTTTCATATGTTAA-CACCCATTACTTGCTCCCGATTATTCAGTGTTACCTGGGG
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3807942 56 -   8455952 ATTCTTCATATGTTAC-CATCCATTAATTGTTCCTGAGTATTCAGTGTTACCTGGGG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269336 56 +    297174 CTTTTTCATATGTTAC-CACCCATTACTTGCTCCTGAGTATTCAGTGTTACCTGGGG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834230 56 + 227556264 CCTTTTCATATGTTAC-CACCCACTACTTGCTCCTGAGTATTCAGTGTTACCTGGGC
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1822896 56 -   2461138 CCTTTTCATATGTTAC-CACCCACTACTTGCTCCTGAGTATTCAGTGTTACCTGGGG
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3739892 56 -   3775709 GTTTTTCATATGTTAC-CACCCATTACTTGCTCCTGATTATTCAGTCTTACCTGGGG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3627642 56 +  47448759 CTTTTCCATACTTTAC-CACCCATTACTTGCTCCGGCTTCTTCAGTGTTACCTGGGG
i calJac3.chr18                   I 1 C 0
s saiBol1.JH378257                  2807086 56 -   4070394 CTTTTCCATACTTTAC-CACCCACTACTTACTCCTGATTCTTCAGCGTTACCTGGGG
i saiBol1.JH378257                I 1 C 0
s cebCap1.NW_016108146v1             267860 56 +    407294 CTTTTCCAAACTTTAC-CACCCACTACTTGCTCCTGATTATTCAGCGTTACCTGGGG
i cebCap1.NW_016108146v1          I 1 C 0
s otoGar3.GL873592                  8645530 57 -   9938236 CTCCTCCATGTCTTACACATCCATTACCAGCTTCTGATTCTTCACTGTTACCCGGGG
i otoGar3.GL873592                C 0 C 0
e panPan2.chr1                    208143055 4382 - 229774977 I
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398278 137 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e rheMac8.chr1                    103758147 3178 - 225584828 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I

a score=7942.000000
s hg38.chr1_KI270711v1_random         18902 2 +     42210 GC
s panTro5.chr1                    208009623 2 - 228573443 GC
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3807998 2 -   8455952 GC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269392 2 +    297174 GC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834286 2 + 227556264 AC
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1822952 2 -   2461138 GC
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3739948 2 -   3775709 GC
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3627698 2 +  47448759 GC
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2807142 2 -   4070394 AC
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             267916 2 +    407294 GC
i cebCap1.NW_016108146v1          C 0 C 0
s tarSyr2.KE944318v1                   4700 2 -     12850 GT
i tarSyr2.KE944318v1              N 0 I 7
s otoGar3.GL873592                  8645587 2 -   9938236 GT
i otoGar3.GL873592                C 0 C 0
e panPan2.chr1                    208143055 4382 - 229774977 I
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201398278 137 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e rheMac8.chr1                    103758147 3178 - 225584828 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I

a score=65491.000000
s hg38.chr1_KI270711v1_random         18904 22 +     42210 AGACGATTTCTGCACTTTCTCA
s panTro5.chr1                    208009625 22 - 228573443 ATATAATTCCTGTACTTTCTCA
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3808000 22 -   8455952 AGACGATTTCTGCACTTTCTCA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269394 22 +    297174 ACATGATTCCTGTACTTTCTCA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834288 22 + 227556264 ACATGAATCCTGTACTTTCTCA
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1822954 22 -   2461138 ACACGAATCCTGTACTTTCTCA
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3739950 22 -   3775709 ACATGATTCCTATACTTTCTCA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3627700 22 +  47448759 ACGTGATTCCTGGATGTTCTCA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2807144 22 -   4070394 AAGTGACTCCTGTATTCTCTCA
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             267918 22 +    407294 ACGCAACTCCTGTATTTTCTCA
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8645589 22 -   9938236 AAGCAGGTGTTATGCTTGTTCA
i otoGar3.GL873592                C 0 C 0
e tarSyr2.KE944318v1                   4702  7 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398278 137 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e rheMac8.chr1                    103758147 3178 - 225584828 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I

a score=15730.000000
s hg38.chr1_KI270711v1_random         18926 3 +     42210 GCC
s panTro5.chr1                    208009647 3 - 228573443 GCC
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3808022 3 -   8455952 GCC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269416 3 +    297174 GCC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834310 3 + 227556264 GCC
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1822976 3 -   2461138 GCC
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3739972 3 -   3775709 GTC
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3627722 3 +  47448759 GCC
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2807166 3 -   4070394 GCC
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             267940 3 +    407294 GCC
i cebCap1.NW_016108146v1          C 0 C 0
s tarSyr2.KE944318v1                   4709 3 -     12850 ACC
i tarSyr2.KE944318v1              I 7 I 2406
s otoGar3.GL873592                  8645611 3 -   9938236 ACC
i otoGar3.GL873592                C 0 C 0
e panPan2.chr1                    208143055 4382 - 229774977 I
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201398278 137 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e rheMac8.chr1                    103758147 3178 - 225584828 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I

a score=133950.000000
s hg38.chr1_KI270711v1_random         18929 44 +     42210 ACCTCAACTTGAACATCTTCATCGTGATCATTGTCATTTTCTGT
s panTro5.chr1                    208009650 44 - 228573443 TCCTCAACTTTAACATCTTCATCCTCATCTTCATCATTTTCTGT
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3808025 44 -   8455952 ACCTCAACTTGAACATCTTCATCGTCATCGTTGTCATTTTCTGT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269419 44 +    297174 TCCTCAACTTCAACATCTTCATCCTCATCTTCGTCATTTTCTGT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834313 44 + 227556264 TCCTCAACTTGAACATCTGCATCCTCACCTTGGCCATTTTCTGT
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1822979 44 -   2461138 TCCTCAACTTGAACATCTGCATCCTCACCTTGCCCATTTTCTGT
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3739975 44 -   3775709 TCCTCAACTTTAACATCTTCATCCTCACCTTCATCATTTTCTGT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3627725 44 +  47448759 TCCATGACACGAACATCTTCATCCTCGTCTTTGTCGTTTTCTGC
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2807169 44 -   4070394 TCCGCGACATGAACATCTTCATCCTCATCTCTGTCATTTTCTGC
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             267943 44 +    407294 TCTGTGACGTGAACATCTTCATCCTCATCTTGATCATTTTCTGC
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8645614 23 -   9938236 ---------------------TCCTCACCCACATGATTTTCTGC
i otoGar3.GL873592                C 0 C 0
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398278 137 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e rheMac8.chr1                    103758147 3178 - 225584828 I
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I

a score=50564.000000
s hg38.chr1_KI270711v1_random         18973 10 +     42210 AAATACAGAA
s panTro5.chr1                    208009694 10 - 228573443 AAATACAGAA
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3808069 10 -   8455952 AAATACAGAA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269463 10 +    297174 AAATACAGAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121931188 10 + 225584828 AAATACAGAA
i rheMac8.chr1                    I 5418 C 0
s macFas5.chr1                    211834357 10 + 227556264 AAATACAGAA
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1823023 10 -   2461138 AAATACAGAA
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3740019 10 -   3775709 AAATACAGAA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3627769 10 +  47448759 AAGTACAGAT
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2807213 10 -   4070394 AAATACAGAT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             267987 10 +    407294 AAGTACAGAT
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8645637 10 -   9938236 AAATACACAA
i otoGar3.GL873592                C 0 C 0
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398278 137 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I

a score=7800.000000
s hg38.chr1_KI270711v1_random         18983 1 +     42210 G
s panTro5.chr1                    208009704 1 - 228573443 G
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3808079 1 -   8455952 G
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269473 1 +    297174 G
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121931198 1 + 225584828 G
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211834367 1 + 227556264 G
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1823033 1 -   2461138 G
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201398415 1 - 220367699 G
i papAnu3.chr1                    I 137 I 4199
s colAng1.NW_012114988v1            3740029 1 -   3775709 G
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3627779 1 +  47448759 G
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2807223 1 -   4070394 G
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             267997 1 +    407294 G
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8645647 1 -   9938236 G
i otoGar3.GL873592                C 0 C 0
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I

a score=962717.000000
s hg38.chr1_KI270711v1_random         18984 222 +     42210 TGTTCGTTCAGATATTTACCACTTCACAGTCTGCAAGCACAGTCAGCCCAATGTGCAACAGAGACATGAACATCTAGGCATGGGTCACCGTTCAACTGAAAACTCTCATGTTTTATCTTTAAC-AGAATGCCCTGGCATGGTTTCCTGATCCATCAGGCAATGCATTTCTGATCT--------GGAGGGCCACCATCAAGATGTGGCCAAATATTGAAAAGACCTTTTGCT
s panTro5.chr1                    208009705 220 - 228573443 TGTTCGTTCAGATATTTCCCACTTCACACTCTGCAAGCACAGTCAGCCCAATGTGC-ACACAGACATGAACATCTAGGCAT-GGTCACTGTTCAACTGAAAGCTCTCATGTTTTATCGTTAAC-AAAATGCCCTGGCATGGTTTCCCGATCCATCAGGCAATGCATTTCTGATCT--------GGAGGGCCACCATCAAGATGTGGCCAAATACTGAAAAGAGCTTTTGCT
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3808080 222 -   8455952 TGTTCGTTCAGATATTTCCCACTTCACAGTCTGCAAGCACAGTCAGCCCAATGTGCAACAGAGACATGAACATCTAGGCATGGGTCACCGTTCAACTGAAAACTCTCATGTTTTATCTTTAAC-AGAATGCCCTGGCATGGTTTCCTGATCCATCAGGCAATGCATTTCTGATCT--------GGAGGGCCACCATCAAGATGTGGCCAAATATTGAAAAGACCTTTTGCT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269474 221 +    297174 TGTTCGTTCAGATATTTCCCACTTCACACCCTGCAAGCACAGTCAGCCCTATGTAC-ACAGAGACATGAACATCTAGGCATGGGTCACCATTCAACTGAAAGCTCTCATGTTTTATCTTTAAC-AAAATGCACTGGCACGGTTTCCTGATCCATCAGGTAATGCATTTCTGATCT--------GGAGGGCCATCATCAAGATGTGGCCAAATATTGAAAAGATCTTTTGCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121931199 221 + 225584828 TTTCCATTTAGATATTCCTCACTTCACACACTGCAAGCACAGTGAGCCCTATGTGC-ACAGAGACATGAACATCTATGCATGGGTCAGTGTTGGACTGAAAGCTTTCATGTTTTATCTTTAAT-AAAATGCCCTGGCATGGTTTCCTGATCCATCAGGCAATGCATTTCTGATCT--------GGAGGGTCACCATCAAGCTGTGGTCAAATATTGAAAAGATGTTTTGGT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211834368 221 + 227556264 TGTTCGTTCAGGTATTTCCCACTTCACACTCTGCAAGCACAGTCAGCCCAATGAGC-ACAGAGACATGAACATCTAGGCGTGGGTCACCGTTCAACTGAAAGCTCTCATGTTTTATCTTTAAC-AAAATGCCCTGGCGTCGTTTCCTGATCCATCAGGCAATGCATTTCTGATCT--------GGAGGGCCACCATCAAGATATGGCCAAATATTGAAAAGACCTTTTGGT
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1823034 221 -   2461138 TGTTCGTTCAGGTATTTCCCACTTCACACTCTGCAAGCACAGTCAGCCCAATGAGC-ACAGAGACATGAACATCTAGGCATGGGTCACCATTCAACTGAAAGCTCTCATGTTTTATCTTTAAC-AAAATGACCTGGCGTTGTTTCCTGATCCATCAGGCAATGCATTTCTGATCT--------GGAGGGCCACCATCAAGATATGGCCAAATATTAAAAAGACGTTTTGCT
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3740030 220 -   3775709 TGTTCGTTCAGATATTTCCCACTTCACACTCTGCAAGCACAGTCAGCCCAATGTGC-ACAGAGACATAGACATCTAGGCATGGGTCACCATTCAACTGAAAGATCTCATGGTTTATCTTTAAG-AAAATGCCCTGGCATGGTTTCCTGTTCCATCAGGCAATGCATTTCTGATCT--------GGAGGGCCACCATCAAGATGTGGCCAAATATTGAAAAGAC-CTTTGCT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3627780 220 +  47448759 TGTTCGTTCAGTTATTTCCCATTTCTCACTCTGCAGGGACAGTCGGCCCAATGTGC-GCAGGGACATGAACATCTGTGTATGGGTCCCTGTTCTACTGAAAGCTCTCATGTTTTCTCTCTAAC-AAAATGCCCTGGCATGGTTTCCTGATCCACCAGGCAATGCATTTCAGATCA--------GGAGGCTCACCGTCAAGATGAGGCCGAATGTTGAAAAGACCTTCTGC-
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2807224 215 -   4070394 TGTTC-----GTTATTTCCCATTTCACACTCTGCAAGCACAGTCAGCCCAATGCAC-AGAGGGACATGAACGTCTGTGTGTGCGTCCCTGTTCTACTGAGAGCTCTCATGATTTCTCTTTCAC-AAAACGCCCTGGCATGGTTTCCTGATCCACCAGGCAATGCATTTCGGATCC--------GGAGGCTCGCTGTCAAGATGAGGACAAATGTAGAAAAGACCTTCTGC-
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             267998 220 +    407294 TGTTCGTTCAGATATTTCCTGTTTCACACTCTGCAAGCACCGTCAGCCCAATGTGC-ACAGGGACATGAACGTCTGCGTGTGGGTCCCTGTTCTACTGAAAGCTCTCATGGTTTCTCTTTAAC-AAAATGCCCTGGCATGGATTCCTGATCCACCAGGCAATGCGTTTCTGATCC--------GGAGGCTCATCGTCAAGATGACGCCAAATGTTGACAAGACCTTCTGC-
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8645648 224 -   9938236 TGTTCACTCTGCTATTTCCCACTTCACACACTACAAACTCAGTGACCTATATGTGC-ACTGAGATATAACTGTCTACATGTGAGTCAGTATCGTAATGAAACTCCTCCTGTTTTGTCTTTAATGAAAATGTCCTGG-ATGGTTTCCTAATGCATCCAACAATGTGCCTTTGCTCACCACCCCGGCATGCTTATCTTCAAAAT--GGCCAAATA--AAAAACACCTTTTCC-
i otoGar3.GL873592                C 0 C 0
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I

a score=42199.000000
s hg38.chr1_KI270711v1_random         19206 10 +     42210 TCCCATATCA
s panTro5.chr1                    208009925 10 - 228573443 CCCCATATCA
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3808302 10 -   8455952 TCCCATATCA
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121931420 10 + 225584828 CCCCATATCA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211834589 10 + 227556264 CCCCATATCA
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1823255 10 -   2461138 CCCCATATCA
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3740250 10 -   3775709 CCCCATATCA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3628000 10 +  47448759 TCCCACATCA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2807439 10 -   4070394 TCCCACATCA
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             268218 10 +    407294 TCCCACATCA
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8645872 10 -   9938236 TCCCATCTTA
i otoGar3.GL873592                C 0 C 0
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=284365.000000
s hg38.chr1_KI270711v1_random         19216 94 +     42210 CTGGAGGCTTGTGCAGCCTCTCTCTGGACTTTGGCAGCTGTCTCCCCCATCCTGC--CAGATCTGATTCCCAGGCACAGGCTTGGTGTCCTGTCAC
s gorGor5.CYUI01015145v1            3808312 92 -   8455952 CTGGAGGCTTGTGCAGCCTCTCTCTGGAC-TTGGCAGCTGTCT-CCCCATCCTGC--CAGATCTGATTCCCAGGCACAGGCTTGGTGTCCTGTCAC
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121931430 96 + 225584828 CTGGAGGCTTGTCCAGCATCTTTCTGGACTTTGGCAGCTGTCTCCCCCATCCCGCCACAGATCTGATTCCCAGGCACGGGCTTGGTGTCCTGTCAC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211834599 96 + 227556264 CTGGAGGCTTGTGCAGCCTCTCTCCAGCCTTTGGCAGCTGTCTCCCCCATCCCGCCACAGATCTGATTCCCAGGCACGGGCTTGGTGTCCTGTCAC
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1823265 96 -   2461138 CTGGAGGCTTGTGCAGCCTCTCTCTGGCCTTTGGCAGCTGTCTCCCTCATCCCACCACAGATCTGATTCCCAGGCACAGGCTTGGTGTCCTGTCAC
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3740260 96 -   3775709 CTGGGGACTTGTGCAGCCTCTCTCTGGACTTTGGCAGCTGTCTCCATCAACCCAACACAGATCTGATTCCCAGGTACAAGCTCGGTGTCCTGTCAC
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3628010 96 +  47448759 CTGGAGGCTTGTGCAGCCTCTCTCTGGACTTTGGCAGCTGTCCCCCCCATCCCGACACAGATCTGATTCCCAGGGACAGGCTTGGCGTCCCGTCAC
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2807449 96 -   4070394 ACGGAGGATTGTGCGGCCTCTCTCAGGACTTTGGCAGCTGTCTCCCCCATCCTCAAACAGATCTGATGCCCGGGGACAGGCTTGCCTTCCTGTCAC
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             268228 96 +    407294 CTGGAGGCTTGTGCAGCCTCTCTCTGGACTTTGGCAGCTGTCTCCCCCTTCCTGACACAGACCTGATGCCCAGGGACAGGCTTGGAGTCCTGTCAC
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8645882 94 -   9938236 -ATGGTGTTTGTG-AACTTCTCTCTGGGTTTCTGCAGCTCTGTCTCTAGTTGTGCCACAGATCTGACCCCCAGGCATAGGCTTTATGTCCCCTAAT
i otoGar3.GL873592                C 0 C 0
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e ponAbe2.chr1                    107346540 15032 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=5005.000000
s hg38.chr1_KI270711v1_random         19310 1 +     42210 A
s gorGor5.CYUI01015145v1            3808404 1 -   8455952 A
i gorGor5.CYUI01015145v1          C 0 C 0
s ponAbe2.chr1                    107361572 1 + 229942017 A
i ponAbe2.chr1                    I 15032 I 10892
s rheMac8.chr1                    121931526 1 + 225584828 A
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211834695 1 + 227556264 A
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1823361 1 -   2461138 A
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3740356 1 -   3775709 A
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3628106 1 +  47448759 A
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2807545 1 -   4070394 A
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             268324 1 +    407294 A
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8645976 1 -   9938236 A
i otoGar3.GL873592                C 0 C 0
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=90382.000000
s hg38.chr1_KI270711v1_random         19311 35 +     42210 GTTTGC--ATTTCAAACCTAATTCTTTCTCTTAGAAG
s gorGor5.CYUI01015145v1            3808405 35 -   8455952 GTTTGC--ATTTCAAACCTCATTCTTTCTCTTAGAAG
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121931527 37 + 225584828 GCTCTCATATTTAGAATCTATTTCTTTCTCTTAGGGG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211834696 35 + 227556264 GTTCGC--ATTTCCAACCTAATTCTTTCTTTTAAGAG
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1823362 35 -   2461138 GTTTGC--ATTTCCAACCTAATTCTTTCTTTTAGGAG
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3740357 35 -   3775709 GTTCGC--ATTTTGAACCTAATTCTTTCTCTTAGGAG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3628107 35 +  47448759 GCTCAT--ATTTACAACCTATTTCTTTCTCTTAGGAG
i calJac3.chr18                   C 0 I 4
s saiBol1.JH378257                  2807546 35 -   4070394 GGTCAC--ATTTAAAACCTGTTGCTTTCTCTTAGGAG
i saiBol1.JH378257                C 0 I 4
s cebCap1.NW_016108146v1             268325 35 +    407294 GATCAT--ATTTACAACCTATTTCTTTCTCTTAGGAG
i cebCap1.NW_016108146v1          C 0 I 4
s otoGar3.GL873592                  8645977 35 -   9938236 GCTGTC--ATTGAGAACCCACTTCTTTCTCTAAGCAG
i otoGar3.GL873592                C 0 C 0
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=8922.000000
s hg38.chr1_KI270711v1_random         19346 4 +     42210 CAGA
s gorGor5.CYUI01015145v1            3808440 4 -   8455952 CAGA
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121931564 3 + 225584828 -AGG
i rheMac8.chr1                    C 0 I 1
s macFas5.chr1                    211834731 3 + 227556264 -AAG
i macFas5.chr1                    C 0 I 1
s cerAty1.NW_012001440v1            1823397 3 -   2461138 -AGA
i cerAty1.NW_012001440v1          C 0 I 1
s nasLar1.chr1                    197949299 3 - 215897965 -AGG
i nasLar1.chr1                    N 0 I 1121
s colAng1.NW_012114988v1            3740392 3 -   3775709 -AGG
i colAng1.NW_012114988v1          C 0 I 1
s calJac3.chr18                     3628146 4 +  47448759 TAAA
i calJac3.chr18                   I 4 C 0
s saiBol1.JH378257                  2807585 4 -   4070394 CAGA
i saiBol1.JH378257                I 4 C 0
s cebCap1.NW_016108146v1             268364 4 +    407294 CAAA
i cebCap1.NW_016108146v1          I 4 C 0
s otoGar3.GL873592                  8646012 4 -   9938236 CAGA
i otoGar3.GL873592                C 0 C 0
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=645296.000000
s hg38.chr1_KI270711v1_random         19350 224 +     42210 CAAA----CTTGTCCCACAG-TCCTCTATGCATCAGAAGATTTCAA---GCCTCCAAG-TGGCTTCTGCTGTGTTATTCAGGGACATTCTATCCATGGGGAGTGCTCCAGTCTGAAGCAC-TTCCTACCACGAAACACCACCACATAAAGTGCCTTCTCCAACATCACACGGCGAGGGGCTTCATCTCATTTTGGAAAGCAGTTTTAAGTGTTCCCACATTTGAATGCTTCA--GA
s gorGor5.CYUI01015145v1            3808444 225 -   8455952 CAAA----CTTGTCCCACAG-TCCTCTATGCATCAGAAGATTTCAA--GGCCTCCAAG-TGGCTTCTGCTGTGTTATTCAGGGACATTCTATCCATGGGGAGTGCTCCAGTCTGAAGCAC-TTCCTACCACCAAATGCCCCCACATCAAGTGCCTTCTCCAACATCACACGGCGAGGGGCTTCATCTCATTTTGGAAAGCAGTTGTAAGTGTTCCCACATTTGAATGCTTCA--GA
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121931568 234 + 225584828 CAAACAACCTTATCCCACCT-TTCTTCATGCATTGGGAGACTTCACAAGCCCTCCAAGTTGGCTTCTGCTGTGTTATTCAGGGACATTCTCTCCATGGGGAGTGCTCCAGTCTGAAGGCC-TTCCTACCACCAAATGCCCCCACATCAAGTGCCTTCTCCAACACCACACGGCGAGGGGCTTCATCTCATTTTGAAAGGTAATCATAAGTGTTCCCATATTTGAATGCTGTATCTA
i rheMac8.chr1                    I 1 C 0
s macFas5.chr1                    211834735 227 + 227556264 CAAA----CTTGTCCCACAG-TCCTCTATACATCAGGAGACTGCACAGGCCCTCCACG-TGGCTTCTGCTGTGTTATTCAGGGACATTCTCTCCGTGGGGAGTGCTCCAGTCTGAAGCCC-TTCCTACCACCAAATGCCCCCACATCAAGTGCCTTCTCCAACACCACACGGCGAGGGGCTTCATCTCATTCTGAAAAACAGTCGTAAGTGTTCCCACATTTGGATGCTTCA--GA
i macFas5.chr1                    I 1 C 0
s cerAty1.NW_012001440v1            1823401 227 -   2461138 CAAA----CTTGTCCCACAG-TCCTCTATACATCAGGAGACTGCACAGGGCCTCCACG-TGACTTCTGCTGTGTTATTCAGGGACATTCTCTCCGTGGGGAGTGCTCCAGTCTGAAGCCC-TTCCTACCACCAAATGCCCCCACATCAAGTGCCTTCTCCAACACCACACAGCAAGGGGCTTCATCTCATTTTGAAAAACAGTCGTAAGTGTTCCCACATTTGGATGCTTCG--GA
i cerAty1.NW_012001440v1          I 1 C 0
s colAng1.NW_012114988v1            3740396 227 -   3775709 CAAA----CTTGCCCCACAG-TCCTCTAAGTATCAGGAGACTTCACAGGCCCTCCATG-TACCTTCTGCTGTGCTATTCGGGGACATTCTCTCTATGGGGAGTGCTCCAGTCTGAAGCAC-TTCCTACCATCAAATGCCCCCACATCAAGTGTCTTCTCCAATACCACATGGCGAGGAACTTTATCTCATTTTCAAAAGCAGTCATAAGTGATCCCACATTTGGATGCTTCA--GA
i colAng1.NW_012114988v1          I 1 I 1
s calJac3.chr18                     3628150 227 +  47448759 CAAA----CTTGTCCCACAA-TCCTCTGCACATCAGGTGACTTCACAGGCCCTCCAAG-TGGCTTCTGCTATGTTATTCAGGGACATTCTCTCCATGGGGAATGCTCCAATCTGAACCAC-TTCCTACCACCAAATGCCCACACATCAAGTGCTTTCTCCAACACCACACAGCGAGGGGCTTTATCTCATTGTGATAAGCGGTCATAAGTGCTCACACATTTGAATGCTTCA--GA
i calJac3.chr18                   C 0 I 16
s saiBol1.JH378257                  2807589 209 -   4070394 CAAA----CTTGTCCCACAA-TTCTCTGCACATCAGGTGACTTCACAGGCCCTCCAAG-TGGCTTCTGCTATGTTATTCAGGGACATTCCCTCCACAGGGAGTGCTGCTGTCTGAACCGC-TTCCTAACACCAAATGCCCACACATCAAGTGCTGTCTCCAACACCACACAGCGAGGGCCTTTA------------------TCGTAAGTGTTCGCACATTTCAATGCTTCA--GA
i saiBol1.JH378257                C 0 I 16
s cebCap1.NW_016108146v1             268368 227 +    407294 CAAA----CTTGTCCCACAA-TCCCCTGCACATCAGGTGACTTCACAGGCCCTCCAAG-TGGCTTCTGCTGTGTTATTCAGGGACATTCTCTCCACAGGGAGTGCTCCAGTCTCAACCGC-TTCCTAACCCCACATGCCCACACATCAAGTGCTGCCTCCAACACCACACAGCGAGGGCCTTTATCTCGTTTTGAGAAGCGGTCGTAAGTGTTCGCACATTTGAATGCTTCG--GA
i cebCap1.NW_016108146v1          C 0 I 16
s otoGar3.GL873592                  8646016 224 -   9938236 CAAT----CCTGTCCCACAGCCCCCCCATACATTAGGGAACTTTATGGGCACTCCAACTTGACTTCTGCTATGTTATCGAGGGAAATTCTCTCCATGGAAAGGGTTCCAGTATAAACCACATTTCTACCACCAAGCACCACTATTTCAAGTATCTT----AACACCACAGAGCAAGGAGCAGTATA-CTCTTTGAAATACATTTATCAATATTCCTACATTTGAATGGTACA--T-
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197949302 1121 - 215897965 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=3600.000000
s hg38.chr1_KI270711v1_random         19574 1 +     42210 C
s gorGor5.CYUI01015145v1            3808669 1 -   8455952 C
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121931802 1 + 225584828 C
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211834962 1 + 227556264 C
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1823628 1 -   2461138 C
i cerAty1.NW_012001440v1          C 0 C 0
s calJac3.chr18                     3628393 1 +  47448759 C
i calJac3.chr18                   I 16 C 0
s saiBol1.JH378257                  2807814 1 -   4070394 C
i saiBol1.JH378257                I 16 C 0
s cebCap1.NW_016108146v1             268611 1 +    407294 C
i cebCap1.NW_016108146v1          I 16 C 0
s otoGar3.GL873592                  8646240 1 -   9938236 C
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197949302 1121 - 215897965 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e colAng1.NW_012114988v1            3740623 1 -   3775709 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=551525.000000
s hg38.chr1_KI270711v1_random         19575 211 +     42210 --CCTTGCA-------AGAGA-CAATTTGCC-----------atggagagagagaaactcaggaaggacaagtcattcactcactgacagttactaagaacattgcc-gaaaagacagcctgggaaccttcattcttagtccagagctcttttcactCTAACAAGCCTGCTCCTATCGCAGCCTCCTTCCTGTCCTTTAAAACTAGACAGATGCTGCCTCTTACTCCAAAGAC
s gorGor5.CYUI01015145v1            3808670 216 -   8455952 --CCTTGCA-------AGAGA-CAATTTGTCTGCC--tgcagatggagagagagaaactcaggaagga-aaatcattcactcaccgacagttactaagaacattgcc--aaaagacagcctgggaaccttcattcttagtccagagctcttttcactctaacaagcgc-ctcCCATCGCAGCCTCCTTCCTGTCCTTTAAAACTAGA-AGATGCTGCCTCTTGCTCCAAAGAC
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121931803 220 + 225584828 --CATTG-A-------AGAGA-CAATTTGACC-TCTTTGCAGGTTTAGACAAAGAAATCCAGAAAGGATAAATCAATCACTCACCCACGGTTACTAAGGACATTGCT-GAAGATACAGCCTGGGAACCTTCATTCTTAGTCCTGGACTCTTTTTACTCTAACAACTTGCCTTCTGTCATAGCCTCCTTCCTGTCCTTTAAAACTGAATGGATATGGCCTCTTGCTCCAAAGAC
i rheMac8.chr1                    C 0 I 10
s macFas5.chr1                    211834963 216 + 227556264 --CCTTGCA-------AGAGA-CAATTTGGCTGCCtttgcagatggagagagagaaactcaggaaggataaatcactccctcactgacagttactaagaacattgcc-aaagagacagcctgggaaccttcattcttagtccagagttcttttcactataacaAGCGTCCTCCTGTCACAGCCTCCTTCCTGTCCTTTAAAACTAGAGAGATG------CTTGCTCCAAAGAC
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1823629 204 -   2461138 --CCTTG--------------------------CCtttgcagatggagagagagaaactcaggaaggataaatcactccctcaccgacagttactaagaacattgcc-aaagagacagcctgggaaccttcatttttagtccagagctcttttcactCTAACAAGCGTCCTCCCGTCACAGCCTCCTTCCTGTCCTTTAAAACTAGACAGACGCTGCCTCTTGTTCCAAAGAC
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3740624 222 -   3775709 --CCTTGCA-------AGAGA-CCATTTGCCTGCTTTTGCAGATGGAGAGAGAGAATCTCACGAGGGAAAAATCACTCACTCTAGGACACTTACTAAGAACACTGCC-AAAGAGACGGCCGGGGAACCTTCATTCTTAGTCCAGAGCTCTTTTAACTCTAACAAGCACCCTCCTGTCACAGCCTCCTTCCTCTCCTTTACAACTAGAGAGATGTTGCCTCTAGCTCCAAACAG
i colAng1.NW_012114988v1          I 1 C 0
s calJac3.chr18                     3628394 230 +  47448759 --CTTTGCAGATGGAGAGAGAGAAATTTACCTGTCTTTGCAGATCGAGGCAGAGAAAATCAGGAAGAAGAAATCAATTACTCCCTGACAGTTCCTAAGAACACTGCT-GAAGATACAGCTTGGGGACCTTCATTCTTAGTCCAGAGCTCTTTCCTCTCCAACAACTTCCCTCCTGCCACAGCTTCCTTCCTGTCCTTTACAACTGAACAGATGCTGCCTCCTGTTCCAAAGAC
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2807815 229 -   4070394 --CTTTGCAGATGGAGAGAGAGAAattggcctgactttgcagatgaagagacagaaagtcaggaagcagaaatcaattgctcactgacagttactaaaaacactgct-gaagatacagcctgggaaccttcattctgaatccagagctctttccactccaacaaccgccCTCCTGTCACAGCTTCCTTTCTGTCCTCTGCAACTGGACAGATGCTGCCTCTTCTT-CAGAGAC
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             268612 230 +    407294 --CTTTGCAGATGGAGAGAGAGAAATTTGcctgactttgcagatggagagacagaaagtcaggaaggagaaatcaattgctcgctgacagttactaaaaacactgct-gaagatacagcctgggagccttcattcttactccagagctctttccactccaacaaccgccCTCCTGTCACAGCTTCCTTTTTGTCCTTTACAACTGGACAGATGCTGCCTCTTGTTCCAAAGAC
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8646241 225 -   9938236 TACTGTTAA-------AGACA-GTATTTGATCCTTTTTCCTGACAGGACGATAGAAATTCAGTAAGGGTGAATTAATCACTCTTCCCCAGTTACTAAAGACAGTGCTTTAGGGTAGAGCCTGAGAAATTCCATTCTGAGCCCAGGGCTCTCTTCACTCTAATAGGCTGCCTCCTGTCACATCCTCCTTCCTGTACTTTAAAACTGGGTAGATCCTGCCTCCTGCTCCAACAAC
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197949302 1121 - 215897965 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=31523.000000
s hg38.chr1_KI270711v1_random         19786 12 +     42210 CACCTTCCATCA
s gorGor5.CYUI01015145v1            3808886 12 -   8455952 CACCTTCCATCA
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211835179 12 + 227556264 CACCTTCCATCA
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1823833 12 -   2461138 CACCTTCCATCA
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3740846 12 -   3775709 CATCTTCCATCA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3628624 12 +  47448759 CACAATCCATCA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2808044 12 -   4070394 CACCTCCCATCA
i saiBol1.JH378257                C 0 I 1244
s cebCap1.NW_016108146v1             268842 12 +    407294 CACCATCCATCA
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8646466 12 -   9938236 CATGCTCCATCA
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197949302 1121 - 215897965 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e rheMac8.chr1                    121932023 10 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=355123.000000
s hg38.chr1_KI270711v1_random         19798 163 +     42210 -AGGGAGGAGGGGAACTTGCAATACTGTGACCTCCAACCCCAT--------GGGTTTCCCAACTCCGTTCTTACCCAGGAACTCCTGGTCATGTCATGGCCACATATGTGTAGCAGAAAATAACCCCACTGATACAACTGTCATTGTGAAAGTATGGAGGTCTGGAGCCTCT
s gorGor5.CYUI01015145v1            3808898 161 -   8455952 -A-GGAGGAGGGACACTTGCAATACTGTGACCTCCAA-CCCAT--------GGGTTTCCCATCTCCGTTCTTACCCAGGAAGTCCTGGTCATGTCATGGCCACATAAGCTTAGTGGAAAAAAACACCACTGATACAACTGTCATTGTGAAAGTATGGAGGTCTGGAGTCTCT
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121932033 163 + 225584828 -AGGAGGAGGAGACATTTGCAATACTGTGACCTCTAACCCCAT--------GGACTTCTTACCTCTGTTTCTATCCAGGAAGTCCTGGTCATGTCATGGCCATATATGTTTAATGGAAAGAAACACCACCAATATAACTGTCATTGTGAAGGTATGGAGGTGTAGAGTCTCT
i rheMac8.chr1                    I 10 C 0
s macFas5.chr1                    211835191 161 + 227556264 -AGGAAGGAGGGACATTTGCAATACTGTGACCTCCAACCCCAT--------GGGTTTCCCATCTCTGTTCTTACCCAGGAAGTCCTGGTCATGTCATGGCCACATATGTTTAGTG--AAAAAACCCCACTGATACAACTGTCATTGTGGAAGTGTGGAGGTCTGGAGTCTCT
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1823845 161 -   2461138 -AGGAAGGAGGGTCATTTGCAATACTGTGACCTCCAACCTCAT--------GGGTTTCCCATCTCCGTTATTACCCAGGAAGTCCTGGTCATGTCATGGCCAC--ATGTTTAGTGGAAAAAAGCCCCACCAATACAACTGTCATTGTGAAAGTGTGGAGGTCTGGAGTCTCT
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3740858 166 -   3775709 -AAGAAGGAGAGACATTCGCAATAATGTGACCTCCAAACCCATGGGTTGCAGGGTTTCCCATCTCTGTTCTCACTCAAGAAGTCCTGGTTATGTCATGGCCACGTATGTTTAGTGGAAAAAAACACCAC-----CAACTGTCAGTGTAAAAGTACAGAGGTCTGGAGTCTCG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3628636 163 +  47448759 -CGGAAGGAGAGACATTTGCAATACGGTGACCTCCAACTCCAT--------GGGTTTCCCATCTGTGTTCTCATTCAGAAAGTCCTAGTCATGTCATGGCCACATATGTTTCGTGGAATAAAACACCATTGATAAAACCATCATTGTGGAATTAAGGAGGTCTGGAGCCTCT
i calJac3.chr18                   C 0 C 0
s cebCap1.NW_016108146v1             268854 163 +    407294 -TGAAAGGAGTGACATTTGCAGTACTGTGACCTCCAACCCCAT--------GGGTTTCCCATCTGTGTTCTCATTCAGAAAGCCCTAGTCATGTCATGGCCACATATGTTTAGTGGAAGAAAACACCACTGATAAAACTGTCATTGCAGAAGGATGGAGGTCTGGAGTCTCT
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8646478 161 -   9938236 TAGAAGAAGGATATATCTGAAATACCATGACCACCAACCCCAT--------TGGTTTCGCATCTCAGTTCCTATCCATCCATTTCTGGTCAGGTCACAACCACA-ATATTTAGTGGAAAGAAAAGTCACTGGC-TTACTGTCATTG-AGAGGTATGGCACTCTGGAGTCTCT
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197949302 1121 - 215897965 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=18627.000000
s hg38.chr1_KI270711v1_random         19961 8 +     42210 CATAAGAC
s gorGor5.CYUI01015145v1            3809059 8 -   8455952 CATAAGCC
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121932196 8 + 225584828 CATAAGCC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211835352 8 + 227556264 CATAAGCC
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1824006 8 -   2461138 CATAAGCC
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3741024 8 -   3775709 CATAAGCC
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3628799 8 +  47448759 CATAAGGC
i calJac3.chr18                   C 0 I 1720
s otoGar3.GL873592                  8646639 8 -   9938236 CATAAGCC
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197949302 1121 - 215897965 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cebCap1.NW_016108146v1             269017 0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=488715.000000
s hg38.chr1_KI270711v1_random         19969 394 +     42210 TGGGGTTTTGGGTCATCAGGGCCTATGGCCACCTTACCTGGGCTGAGCTTTTGGAAAAGTTGCTGTGCCAGTCTACACCCCTCAGCCAGCTGTTCTTGGAGGTCCTGCCCCTGGGACTTGTCTGGCTCATCCGGAGTGAGGAGGGCCTGGAGATGCTGATTCAATGAGCGGGAGGCATCTCTCCCTTCCCGTAACTTCTCCCTTAACTGGGTCAGCTCCCGTTCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGACGGTAGAGAAAATTTAAGAGTGGAAAGGGTTGAGTGATCCGCTCAAA-TATTGCAACAGAGATTTCTGAGACAATGTCCTCAAGGAGACCTCCAAGCAGAAGGTCAGCACATGTTGAAAGGAATGACTGTGG
s gorGor5.CYUI01015145v1            3809067 393 -   8455952 TGGGGTTTTGGGTCATCAGGGCCTATGGCCACCTTACCTGGGCTGAGCTTTTGGACAAGTTGCTGTGCCAGTCTACACCCCTCAGCCAGCTGTTCTTGGAGGTCCTGCCCCTGGGACTTGTCCGGCTCATCCGGAGTGAGGAGGGCCTGGAGATGCTCATTCAATGAGCGGGAGGCATCTCTCCCTTCCCGTAACTTCT-CCTTAACTGGGTCAGCTCTCGTTCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGACGGTAGAGAAAATTTAAGAGTAGAAAGGGTTGAGTGATCCGTTCAAA-TATTGCAACAGAGACTTCTGAGACAATGTCCTCAAGGAGACCTTCAAGCAGAAGGTCAGCACATGTTGAAAGGAATGTCTGTGG
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121932204 353 + 225584828 T-GGGCTTTGTGTCATCAGGGCCTGTGGTCACCTTACCTGGGCTGAGCTTGTGGACAAAGTGCTCTGCCAGC-----------------CTGCTCTCAGAGGTCCTGCCCCTGGGAGTTGTCAGAATCATCAGGAGTGAGGAGGACCTTGAGATGCTGATTCAGTGAGAGGAAGGCGTGTCTCCCTTCCTGTAACATGTCCTGTAACTGGGCCAGCTCTCAGGTCTGAGAGTGAACAGAGACTTTATATTGCCTAAGGTGGAATAGTAGAGAAAATTTAATAGTGGAAAGGGATGAGTGATCCGTTCTAA-TATTGCAACA-----------------------AAGGAGCCCTCCATGCAGAAAGTCAGTACATGTTAAGGGAAATGCCTGTGG
i rheMac8.chr1                    C 0 I 88
s macFas5.chr1                    211835360 394 + 227556264 TGGGGTTTTGGGTCATGAGGGCCAATGGCCACCTTACCTGGGCTGAGCTTTTGGACAAGGTGCTGTGCCAGCCTACACCCCTCAGCCAGCTGTTCTCGGAGGTCCTGCCGCTGGGACTTGTCCGGCTCATCCGGAGTGAGGAGGGCCTGGAGATGCTGAGTCAATGAGCGGGAGGCATCTCTCCCTTCCCGTAACTTCTCCCTTAACTGGGTCAGCTCTTGTGCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGAGGGTAGAGAACATTTAACAGTGGAAAGGGATGAGCGATCAGTTCTAA-TATTGCAACAGAGATTTCTGAGACAATGTCCTTGAGGAGACCTCCAAGCAGAAGGTCAGCACATGTTTAAAGGAATGTCTGTGG
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1824014 361 -   2461138 TGGGGTTTGGGGTCATCAGGGCCTGTGGCCACCTTACCTGAGCTGAGCTTGTGGACAAGGTGCTGTGCCAGCCTACACCCCTCAGCCAGCTGTTCTTGGAGGTCCCGCCACTGGGACTTGTCCGGCTCATCCAGAGTGAGAAGGGCCTGGATATGCTGAGTCAATGAGCAGGAGGCATCTCTCCCTTCCCGTAACTTCTCTCTTAACTGGATCAGCTCTCATGCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGAGGGTAGAGAACATTTAACAGTGGAAAGGGATGAGCGA----------------------------------CAATGTCCTCAAGGAGAACTCCAAGCAGAAGGTCAGCACATGTTTAAAGAAATGCCCGTGG
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3741032 391 -   3775709 TGGGGTTTTGGGTCATCAGGTCCTAGGGAAACCTTACCTACGGTGAGCTTTCGAACGAGGTGCTGTGCCAGCCTACAGCCCTCGGCCAGCTGTTCTCGGAGGTCCCGCCCCTGGGAGTTGGCCGGCTCATCCAGAGTGAGGAGGGCCTGGAGATGCTGATTCAATGTGTGGGAGGCATCTCTCCCTTCCTGCAACTTCTCCCTTAACTGGCTCAGCTTTCGTTCCTTAGAGTGAACCAGGACTTTATATTGCCTACGGTGAGATAGGAGAGAAAATTTAACAGTGGAAAGGGGTGAGTGATAAGATCGAA-TATTGTGACAGAGATTTCTGAGACAATGTCCTCAAGGAGACCTCCA---AGAAGGTCAGCACATGTTTAAAGAAATGTCTGTGG
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8646647 386 -   9938236 TGGGACATTGCGTAATCGGGGTCTGTGACCACCTTACCTGGGCTGAGTGTGCAGA-GAGGTGCTCTGCCAGCCTGTGCCCCTCAATCAGTTGCTCTCGGAGGCTCTGCGCCTGGCAGCTG------TCATTGTAGCTGAGGAAAGCCCCAACATGTTG-TTGAGTAAGGAGGAGACATCTCTTTCCTCCCATAACTGCTCTTTTAACAGGGTCACCTTCTGCTCCTGAATGTGAATTATGACACTGTATTTCCTAAGATAAGAGAGTAGAGAAAACTTGTGAG-AGAGAGGGATGAGTGATGAGTTCTAAGCATTGCAGCAGAGATTTCTGTGCACGTATTGTTAAGGACCCCTTCAAGCATAATTTCATCACATGCTTGGTGAAATGCTAGTGG
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197949302 1121 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cebCap1.NW_016108146v1             269017   0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=65578.000000
s hg38.chr1_KI270711v1_random         20363 75 +     42210 CCAACAGAAAGAATAGAAAATGGTTTACAGGCTTCCTCTGTATCAGAGAGGGCTCCTGCAAGATCCTCGATGATG
s gorGor5.CYUI01015145v1            3809460 75 -   8455952 CCAAGAGAAAGAATAGAAAATGGTTTACAGGCTTCCTCTGTATCAGAGAGGGCTCCTGCAAGATCCTCGATGATG
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211835754 75 + 227556264 CCAAGAGAAAGAATAGAAAATGGTTTACAGGCTTCCTCTGTATCAGAGAGGGCTCCTGTAAGATCCTTGATGATG
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1824375 75 -   2461138 CCAAGAGAAAGAATAGAAAATGGTTTACAGGTTTCCTCTGTATCAGAGAGGGCTCCTGTAAGATCCTTGATGATG
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3741423 75 -   3775709 CCAAGAGAAAGAACAAAAAATGGTTTACAGGCTTCCTCTATATCAGAGAGGGCTCCTGTAAGATCCTCCACGATG
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8647033 50 -   9938236 ----TAAAACGAA---------------AGGCCTTGCCAGTATTGGAGCGTGCTCCT-TAAGATTCCACA-----
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197949302 1121 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cebCap1.NW_016108146v1             269017  0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e rheMac8.chr1                    121932557 88 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=22734.000000
s hg38.chr1_KI270711v1_random         20438 14 +     42210 TTCCATTCATCTTT
s gorGor5.CYUI01015145v1            3809535 14 -   8455952 TTCCATTCATCTTT
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121932645 14 + 225584828 TTCCATTCATCTTT
i rheMac8.chr1                    I 88 C 0
s macFas5.chr1                    211835829 14 + 227556264 TTCCATTCATCTTT
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1824450 14 -   2461138 TTCCATTCATCTTT
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3741498 14 -   3775709 TTCCATTCACCTTT
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8647083 14 -   9938236 CTCCGTTCCTGTTT
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197949302 1121 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cebCap1.NW_016108146v1             269017  0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=1219.000000
s hg38.chr1_KI270711v1_random         20452 1 +     42210 C
s gorGor5.CYUI01015145v1            3809549 1 -   8455952 C
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121932659 1 + 225584828 T
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211835843 1 + 227556264 C
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1824464 1 -   2461138 C
i cerAty1.NW_012001440v1          C 0 C 0
s nasLar1.chr1                    197950423 1 - 215897965 C
i nasLar1.chr1                    I 1121 I 263
s colAng1.NW_012114988v1            3741512 1 -   3775709 C
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8647097 1 -   9938236 T
i otoGar3.GL873592                C 0 C 0
e calJac3.chr18                     3628807 1720 +  47448759 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cebCap1.NW_016108146v1             269017 0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=135474.000000
s hg38.chr1_KI270711v1_random         20453 125 +     42210 CCTTCTGTAAACAAAAGTAGGTGTCTTCCTAATTCCGTTTCAAAAAGA----CATCCTTTCAGTTCCTCACTCTGGCCATGGACATTTCCATGTGAAAATACACATAGTGCATCTTGCGGCCACTAGAT
s gorGor5.CYUI01015145v1            3809550 125 -   8455952 CCTTCTGTAAACAAAAGTAGGTGTCTTCCTAATTCCGTTTCAAAAAGA----CATCCTTTCAGTTCCTCACTCTGGCCATGGACATTTCCATGTGAAAATACACATGGTGCATCTTGCGGCCACTAGAT
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121932660 107 + 225584828 TCTTCTGTAA-----------------CCAAATG-AGTTCCAAAAGGA----TTTTCCTTCGATTTCTCATTTTGGTTGTGGACATTTTCATGTTAAAATACACATAGTGCATTATTCAGTGACTGGAC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211835844 123 + 227556264 TCTTCTGTAAACAAAAGTAGGTGTCTTCCTAATT-CGTTTCAAAAAGA----CATCCTTTCAGTTCCTCACCCTGGCCACGGACATTTCCATGTGAAAATACGCATAGTGCATCTTGCGGCGA-TAGAT
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1824465 122 -   2461138 TCTTCTGTAAACAAAAGTAGGTGTTTTCCTAATTCCATTTCAAA--GA----CATCCTTTCAGTTCCTCACCCTGGCCACAGACATTTCCATGTGAAAATATGCATAGTGCATCTTGCGGCGA-TAGAT
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3741513 129 -   3775709 CCTTCTATAAACAAAAGTAGGTGTCTTCCTTATTCCATTTCAAAAAGACATCCATCCTTTCAGTTCCTCACTCTGGCCATGGACATTTCCATGTGAAAATACACATAGTGCATCTTGCAGTCACTAGAT
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8647098 111 -   9938236 TCTTCTGCAAACAAAACTGCATCAGTTCCTAATC-AGATTCACAAAGA----TGTCCCTTTGTTTCCTCGCTTTGGCCA--GCCATCTCCACATGCAAATATACTGAGTGCAAGGTGC-----------
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950424 263 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cebCap1.NW_016108146v1             269017   0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=223312.000000
s hg38.chr1_KI270711v1_random         20578 144 +     42210 ACAAAGCCATGTACAGAAATGAGGCCAGGTGCAGATGGGGCGAATTGAAA---------------AGACGAAAGAAGAAAAGAATGACAGGGTCGAGAAGGCAACATTGATTGAGTGAAAGAATGAGAAGACGCAGTCAGTCA----GAAGGTGATTCTCACT
s gorGor5.CYUI01015145v1            3809675 144 -   8455952 ACAAAGCCATGTACAGAAATGAGGCCAGATGCAGATGGGGCGAATTGAAA---------------AGACGAAAGAAGAAAAGAATGACAGGGTCGAGAAGGCAACATTGATTGAGTGAAAGAATGAGAAGCCGCAGTCAGTCA----GGAGGTGATTCTCACT
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121932767 130 + 225584828 ACAAAGCCGTGCACAGAAATGTGGCCAGGTAC----------AACTGGAA---------------AGATGAGAAAAGAAAAGAATGACAGGGTCAAGAAGGCAATATTGAT----TGAACAAATGAGAAGCCCAAGTCAGTCA----GGAGGTGATTCTGACT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211835967 144 + 227556264 ACAAAGCCATGTACAGAAATGAGGCCGGGTGCAGATGGGGCGAATTGAAA---------------AGAGGAAAGAAGAAAAGAATGACAGGGCCGAGAAGGCAACATTGATTGAGTGAAAGAATGAGATGGCACAGCCACTCA----GGAGGTGATTCTGACT
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1824587 144 -   2461138 ACAAAGCCATGTACAGAATTGAGGCCAGGTGCAGATGGGGCGAATTGAAA---------------AGACAAAAGAAGAAAAGAATGACAGGGTCAAGAAGGCAACATTGAATGAGTGGAAGAATGAGACGCCGTAGCCAGTCA----GGAGGTGATTCTGACT
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3741642 144 -   3775709 GCAAAGCCATGGACAGAAATGAGGCCAGGTGCAGACGGGACCAACTGAAA---------------AGGCGAAAGAAGAAAACAATGACAGGCTCCAGAAGGCAACATTGATTGAGTGAAAGGATGAGAAGCCGCAGTCAGTCA----GGAGGTGATTCTGACT
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE944318v1                   7118 144 -     12850 ACAGTGTCACACATAGAAGTCTGGCCATGTAAAGGTGAGGTTAATTGGAC---------------AGATGAAAGACCCAAAGAAAGATGGAGTGAACAAGACTAGATTTTTTGGATGAAAGAATAAGAAACCACACTCAGTCG----GGAGGTGATTCTGATT
i tarSyr2.KE944318v1              I 2406 C 0
s otoGar3.GL873592                  8647209 161 -   9938236 ACAAAGCCACACACAGGCATGTGACCCGGTCCAGCCAGGGCTAAGTGGAAATGGGCTAAGTGGCTAAGTGGAAGAACAGAAG-ACGACAGGTTCAAGAAGACCACATTCTTTAGGTGAAAGAATCAGAAGCCACAGTCAGTCAGGAGGGAGGTGATTGTGGT-
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950424 263 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cebCap1.NW_016108146v1             269017   0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=-1986.000000
s hg38.chr1_KI270711v1_random         20722 1 +     42210 -A
s gorGor5.CYUI01015145v1            3809819 1 -   8455952 -A
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121932897 1 + 225584828 -A
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211836111 1 + 227556264 -A
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1824731 1 -   2461138 -A
i cerAty1.NW_012001440v1          C 0 C 0
s nasLar1.chr1                    197950687 1 - 215897965 -A
i nasLar1.chr1                    I 263 I 2608
s colAng1.NW_012114988v1            3741786 1 -   3775709 -G
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE944318v1                   7262 1 -     12850 -A
i tarSyr2.KE944318v1              C 0 C 0
s otoGar3.GL873592                  8647370 1 -   9938236 C-
i otoGar3.GL873592                C 0 C 0
e calJac3.chr18                     3628807 1720 +  47448759 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cebCap1.NW_016108146v1             269017 0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=21258.000000
s hg38.chr1_KI270711v1_random         20723 10 +     42210 AGGGTAAGTg
s gorGor5.CYUI01015145v1            3809820 10 -   8455952 AGGGTAAGTg
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121932898 10 + 225584828 AGAGTAAATG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211836112 10 + 227556264 AGGGTAAGTg
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1824732 10 -   2461138 AGGGTAAGTg
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3741787 10 -   3775709 AGGGTAAGTg
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE944318v1                   7263 10 -     12850 AGAGTAAATG
i tarSyr2.KE944318v1              C 0 I 58
s otoGar3.GL873592                  8647371 10 -   9938236 AGAGAAAATG
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cebCap1.NW_016108146v1             269017  0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=96619.000000
s hg38.chr1_KI270711v1_random         20733 75 +     42210 gggtggtgatggcacaccattttgagtatactgaatgctgctgtgtggttcacactcctttggttaattttgtgt
s gorGor5.CYUI01015145v1            3809830 75 -   8455952 gggtggtgatggcacaccattttgagtatactgaatgctgctgtgtggttcacactcctttggttaattttgtgt
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121932908 75 + 225584828 CAgtggtgatcgcacagcattttgagtatactaactgctgctgggtagttcactttcctttggttacttttgtgt
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211836122 75 + 227556264 gggtggtgatgacacaccattttgagtatactgaatgctgttgggtggttcccactcctttggttaattttgtgt
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1824742 75 -   2461138 gggtggtgatggcacaccattttgagtatactgaatgctgctgggtggtttgcactcctttgattaatttcgtgt
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3741797 75 -   3775709 gggtggtgatggcgcaccattttcagtacactgaatgctgctgggtggttcccactcctttagttatttttgtgt
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8647381 68 -   9938236 TGGTGGTGGCTGCTCTCCATTTTGAGTATCCTCAA--ATGTTGACCTATTTGCTTTTCCTTGGTTAATCT-----
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e tarSyr2.KE944318v1                   7273 58 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cebCap1.NW_016108146v1             269017  0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=30645.000000
s hg38.chr1_KI270711v1_random         20808 17 +     42210 tatgtaaatttcacatc
s gorGor5.CYUI01015145v1            3809905 17 -   8455952 tatgtaaatttcacatc
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121932983 17 + 225584828 tatgcaaatttcacctc
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211836197 17 + 227556264 tatgtaaatttcacctc
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1824817 17 -   2461138 tatgtaaatttcacctc
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3741872 17 -   3775709 tatgcatatttcacctc
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE944318v1                   7331 17 -     12850 TACAGGAATTTTACCTC
i tarSyr2.KE944318v1              I 58 I 506
s otoGar3.GL873592                  8647449 17 -   9938236 CACGTGAATTTCACTTT
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cebCap1.NW_016108146v1             269017  0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=186940.000000
s hg38.chr1_KI270711v1_random         20825 165 +     42210 aaCAATTACTTGTTTGAAAAAGAGAAAACAAGGCTCTGAGAAACAACTGCAACCCATAAATTTTTATTATCCTTCTTCT--CTGTTTGATAAATATTTGTGTGTAGCGAGCCTGCCATGGCAATTCCTGCCCTTCCCCTGGCCCAGCTTAGTTCTTAAGTCTCCCCA
s gorGor5.CYUI01015145v1            3809922 165 -   8455952 aaCAATTACTTGTTTGAAAAAGAGAAAACAAGGCTCTGAGAAACAACTGCAACCCATACATTTTTATTATCCTTCTTCT--CTGCTTGATAAATACTTGTGTGTTGCGAGCCTGCCATGGCAATTCCTGCCCTTCCCCTGGCCCAGCTTCGTTCTTACTTCTCCCCA
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121933000 145 + 225584828 aaCAATTACTTGTTTGAAAAAGAGAAAACGAG----------------GCAACCCATAACTTACTATTATT----TTCT--CTGTTTTATAAATATTTGTGTGACATGTGCCTGCCGTGGCAATTCCTGCCCTTCCCCTGGCCCAGCTTAGCTCTTACTTCTCCCCG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211836214 157 + 227556264 aaCAATTACTTGTTTGAAAAAGAGAAAACAAAGCTCTGAGAAACAACTGCAACCCATAACTTATCCTTG------TTCT--CTGTTTGATAAATATTTGTGTGTCGTGAGCCTGCCATGGCAATTCCTTCCCTT-CCCTGACCCAGCTTAGCTCTTACTTCT-CCCG
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1824834 164 -   2461138 aaCAGTTACTTGTTTGAAAAAGAGAAAACAAGGCTCTGAGAAACAACTGCAACCCATAACTTATTATTATCCTTGTTCT--CTGTTTGATAAATATTTGTGTGTCGTGAGCCTGCCATGGCAATTCCTTCCCTT-CCCTGACCCAGCTTAGCTCTTACTTCTCCCCG
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3741889 165 -   3775709 aaCAATTACTTCTTGGAAAAAGAGAAACCAAGACTCTCAGAAACAACTGCAACCCATAACTTATTATTATCCTTGTTCT--CTGTTTCATAAATGTTTGTGTATTGTGAGCCTGCAATGGCAATTCCTACCCTTCCCCAGACCCAGCTTAGCCCTTACTTCGCCCAG
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8647466 157 -   9938236 CATAATTAGGTGTTTTGGAA--ACAACACATAGCTCTGTGTAAAAACTG-----CATAACTTACCATTATTTTTGTTATACTTGTTTTATAAGTATTTGTGAGACACATGGCTGCCATGTCAACTCCTACCTCC-TCCTGGCCCGGGTGAGCTCTATTGTCTCGG--
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e tarSyr2.KE944318v1                   7348 506 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cebCap1.NW_016108146v1             269017   0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=564455.000000
s hg38.chr1_KI270711v1_random         20990 339 +     42210 CTGAGCTGCTGTACTTCAGAGATTTACACACCTGTCCCCCTGCCTG--CCCCCATGGGGTCCCCTCACCTGAGCTCCTCAGCTTGCTTGAGCTGCTCTGCAAGCTTCTCCTCCTTGAACT---GTCGCTCATTCCTCAGCACAGATTTTATGAGGTCTTTGCACTCTTCATATTCTGAGAAAAGACAGACACGCCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCATTGCCTACAGGGCAGGAGCCAGGTCC-ATCCCAAGGACAAAACTCTCCCCAGTACCAGGGTCTAGACAGGGATTTCCACATCTTTA-CTCTTCAGTCTCCTGAATTTCTGGCATC
s gorGor5.CYUI01015145v1            3810087 340 -   8455952 CCGAGCTGTTGTACTTCAGAGATTTACACACCTG-CCCCCTGCCTG--CCCCCATGGGGTCCCCTCACCTGAGCTCCTCAGCTTGCTTGAGCTGCTCCGCAAGCTTCTCCTCCTTGAACTGTCGTCGCTCATTCCTCAGCATAGATTTTATGAGGTC-TTGCACTCTTCATATTCTGAGAAAAGACAGACACGCCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCATTGCCTACAGGGCAGGAGCCAGGTCC-ATCCCAAGGACAAAACTCTCCCCAGTACCAGGGTCTAGACAGGGATTTCCACATCTTTA-CTCTTCAGTCTCCTGACTTTCTGGCATC
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121933145 331 + 225584828 CTGAGCTGCTGTA---CAGAGATTCACACACCTGCCCACCTGCCTG--CCCCCACGGGGCCCCCTCAGCTGAGCTCCTCCGCTTGCCTGAGCTCCTCTGTCAGCTTCTCCTCCTTGAACT---TTAGTTCATCCCTCAGCATAGATTTTATCAGGTCTTTGCACTCTTCATATTCT-----AAGACAGACACGCCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCACTGCCTACAGGGCAGGAGCCAGGTCC-ATGCCAAGGACAAAACTGTCCCTAGTTCCAGGCTGTAGGTAGGGATGTCCACATCTTTA-CTCTTCAGCCTCCTGACTTTCTGGCATC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211836371 339 + 227556264 CCGAGCTGCTGTACATCAGAGATTTACACACCTGCCCACCTGCCTG--CCCCCACGGGGCCCCCTCACCTGAGCTCCTCAGTTTGCTTGAGCTGCTCTGCAAGCTTCTCCCCCTTGAACT---GCAGCTCATCCCTCAGCATAGATTTTATGAGTTCTTTGCACTCTTCATACTCTGAGAAAAGACAGACACGCCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCACTGCCTACAGGGCAGGAGGCAGGTCC-ATCCAAAGGACAAAACCGTCCCCGCTACCAGGCTCTAGGCAGGGATTTCCATATCTTTA-CTCTTCAGTCTCCCGACTTTCTGGCGTC
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1824998 339 -   2461138 CCGAGCTGCTGTACGTCAGAGATTTACACACCTGCCCACCTGCCTG--CCCCCACGGGGCCCCCTCACCTGAGCTCCTCAGCTTGCTTGAGCTGCTCTGCGAGCTTCTCCCCCTTGAACT---GCAGCTCATCCCTCAGCATAGATTTTATGAGGTCTTTGCACTCTTCATACTCTGAGAAAAGACAGACACGCCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCACTGCCTACAGGGCAGGAGGCAGGTCC-ATACCAAGGACAAAACTGTCCCCGCTACCAGGCTCTAGGCAGGGATTTCCACATCTTTA-CTCTTCAGTCTCCCGACTTTCTGGCATC
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3742054 336 -   3775709 CCGAGTGGCTGTAGTTCAGAGATTTACACACCTGCCCACCTGAATG------CATAGGGCCCCCTCACCTGAGCTCCTCAGCTTGCCTTAGCTGCTCTGCAAGCTTCTCCTCCTTGAACT---GAAGATCATCCCGCAGCATAGATTTTAGGAGGTCTTTGCACTCTTCATAGTCTGAGAAAAGACAGACACACCGGCCTCAGTGAAAAGCTGGACACACTGCGGTGGCCACTGCCTACAGGGCAGGAGCCAGGTCCAATACCAAGGACATAACTGTCTCCAGTACCAGGCTCTAGGCAGGGATTTCCACCTCTTTA-CTCTTCAGTCTCCCAACTTTCTGGCATC
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE944318v1                   7854 336 -     12850 CTGAGTTGCAGAACTTCAGAGATT--CATACTTTCCTACCTGTCCCATCTCCCAGCATGTTCTCTTACCTGAGCTCTTCAGCTTGCCTGGGCTTCTGCACTGGCTCCCCCTCCTGGAACT---GCAGCTCCTCCCCCAGCACGGACTCCAATAAATCTTTGTACTCCTCACACTCTGAGAAAAGACAGACACGCCTGCCTCAG-GGAAAGCTGGCAATACTCTTTTGGTCACTGTCTAGAGCAGAGAAGGAGGGCCT-CTCCCTAGGAGATAAGAACCCCCAGTTCCAG--TCTAGGCAGGGATTTCCACATCATTA-TTTACCTACCTGCCGACTCCATGGCATC
i tarSyr2.KE944318v1              I 506 C 0
s otoGar3.GL873592                  8647623 320 -   9938236 CTGAGCTTTCCCCTCTCAGGAATTCTCACAC-----------------CCCCCACA--GCCCCCTTACCTGAGCTTTTTAGCTAGTGTCAACGTCTCTGCCTGCTCCTCCACTTCGAAAT---TTGGCTTCTCACCCAGCATGGACTCCATGATGTCTCTGCACTCTTCACA--CTGAGAAAAGACAGACGCACCTGCCATAGTG-AAAGCTGGCCATGCTGCTGAGGTCACTGCCCACAGGGAAGGAGGCAGGGCC-CATCCTGGGACAAAAGTATCCCCAGCACCAGGCTCTATTTGGGGATTTTCAAATACGTATTTCCTCAATTTTCCAACTATGTAGCACT
i otoGar3.GL873592                C 0 I 301
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cebCap1.NW_016108146v1             269017   0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=140260.000000
s hg38.chr1_KI270711v1_random         21329 108 +     42210 TGATCCTCCAAAATTTAGAGATG----AAGAGAACCTCAAGGGCACATCAAGGAAGTTGACAAGATGATTCAACCACAAGGAAGTGGAGTCAGAATTCACAGCCCCTGAGGT
s gorGor5.CYUI01015145v1            3810427 112 -   8455952 TGATCCTCCAAAAtttagagatgaagaaagagaacctcaagggcacatcaaggaagttgacaagatgattcaaccacaacgaagtggagtcagaattcacagtccctgaggt
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121933476 111 + 225584828 TGATACtcc-ctacttagatacaggaaaaaagaagctcaggggcacattaagcaacttgacaagatgattcacctggaaggaggcagggtcagaattcacagcccctgaggt
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211836710 112 + 227556264 GAATCCTCCAAAATTTAGAGATGAAGAAAGAGAAACTCAAGGGCACATCAAGGAAGTTGACAAGATGATTCAACCACAACGAAGTGGAGTCAGAACTCACAGCCCCTGAGGT
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1825337 110 -   2461138 TGATCCTCCAAAATTTAGAGACAAAGAA--GGAAACTCAAGGGCACATCAAGGAAGTTGACAAGATGATTCAACCACAACGAAGTGGAGTCAGAATTCACAGCCCCTGAGGT
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3742390 111 -   3775709 TAATCCTTCAAAATTTACAGACAAAGAAAGAGAAACTCAA-GGCACATCAAGGAAGTTGACAAGATGATTCAACCACAATGAAGTGGAGTCAGAATTCACAGCCCCTGAGGT
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE944318v1                   8190 101 -     12850 CGATACTACACAATTTGGAGATGAGAAAAGAGACACTCAGAGGC----------AGTTGACAAGATAATTTTACTG-AATTTGATAGAGTCTGAATTCACATCCCCTAAGGC
i tarSyr2.KE944318v1              C 0 C 0
e otoGar3.GL873592                  8647943 301 -   9938236 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cebCap1.NW_016108146v1             269017   0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=61141.000000
s hg38.chr1_KI270711v1_random         21437 44 +     42210 CTGACTCTGAATGCAGGGCCACTTTCCCAAGACTTGCAGCCTCT
s gorGor5.CYUI01015145v1            3810539 44 -   8455952 ctgactctgaatgcggggccactttccCAAGCCTTGCAGCCTCT
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121933587 44 + 225584828 ctgactctgaatcatgggatgctttccCAAGGCTTGCAGCCTCT
i rheMac8.chr1                    C 0 I 1322
s macFas5.chr1                    211836822 43 + 227556264 CCAAGTCTGAATGTGGGGCCGCTTTCCCAAGCCTT-CAGCCTCT
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1825447 43 -   2461138 CTGAGTCTGAATGCGGGGCCACTTTCCCAAGCCTT-CAGCCTCT
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3742501 44 -   3775709 CTGACTGTGAATGCGGGGCCACTTTCCCAAGCCTCGCAGCCTCT
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE944318v1                   8291 42 -     12850 CTGACAT--AGTAATGGGCCACTTTACCAAGTCTTGAAGTTTCT
i tarSyr2.KE944318v1              C 0 C 0
s otoGar3.GL873592                  8648244 42 -   9938236 CTGACTTTGAATTACCAGTCA-TTTCCCAAG-CTTGCAGCCTGC
i otoGar3.GL873592                I 301 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cebCap1.NW_016108146v1             269017  0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=138234.000000
s hg38.chr1_KI270711v1_random         21481 132 +     42210 CCTCTAAAACACTGCACTGGGGCATGAAGTAGTGATTTCTTGTACAGTCGGGAAGGCCCCTAGGACTATGGGACTGATGGCTTCCCTTTTACTGGGAATTTCAAGGACAAGTATGCGAAAGATTTTAAAAAT
s gorGor5.CYUI01015145v1            3810583 132 -   8455952 CCTCTAAAACACTGCACTGGGGCATGAAGTAGTGATTTCTTGTACAGTCGGGAAGGCCCCTAGGACTATGGGACTGATGGTTTCCCTTTTACTGGGAATTTCAAGGACAAGTATGCGAAAGATTTTTAAAAT
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211836865 130 + 227556264 CCTCTAAAACACTGCACTGGGCCATGAAGCAGTGATTTCTTGTA-AGTCGGGAAGGCCCCTAGGACTATGGGACTGACGGTTTCCCTTTTACTGGGAATTCCAAGGACAAGTATGTCAAAGATTTTTAAAT-
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1825490 130 -   2461138 CCTCTAAAACACTGCACTGGG--ATGAAGCAGTGATTTCTTGTACAGTTGGGAAGGCCCCTAGGACTATGGGACTGATGGTTTCCCTTTTACTGGGAATTTCAAGGACAAGTATGTCAAAGATTTTTAAAAT
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3742545 130 -   3775709 CCTCC-AAACACTGCACTGGGGCATGAAGTAGAGATTTCTTGGACAGTCGGGAAGG-CCCTAGGACTATGGGACTGATGGTTTCCCTTTCACTGGGAATTTCAAGGACAAATATGTCAAAGATCTGAAAAAT
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE944318v1                   8333 113 -     12850 TACGGAAAAGTCTGTGCTGCA-CAGAAAGTCCTGATTTCCTGGGGAGTTGAGAAGGCCCCTAGGTCAATGGGACTCATGG-TTCCCTTTTACTGGAATTTTGAA-------------AAAAATCTAAA----
i tarSyr2.KE944318v1              C 0 C 0
s otoGar3.GL873592                  8648286 129 -   9938236 TATGTAAAACCCTGTGGTGGAGCAGCAAGGAGCAATTTCCTGTGCAGCTGGGAAGGCCTTGAGGATGACAGGACTGATGG-GTCCCTTGTGCTGGAAATTGTAAGCAC-TTTACCACAAAGATTTAAAAAA-
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cebCap1.NW_016108146v1             269017   0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e rheMac8.chr1                    121933631 1322 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=57032.000000
s hg38.chr1_KI270711v1_random         21613 52 +     42210 CTTTGATTTTTAAATCATATCTTCTGTTATGATTTTA--AGAATCATATCTGAA
s gorGor5.CYUI01015145v1            3810715 52 -   8455952 CTTTGATTTTTAAATCATATCTTCAGTTATGATTTTA--AGAATCATATCTGAA
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    103761325 52 - 225584828 CTTTGATTTCTAAATCATATCTTCAGATATGATTTTA--AGAATCATATCTGAA
i rheMac8.chr1                    I 3178 T 3230
s macFas5.chr1                    211836995 52 + 227556264 CTTTGATTTTTAAATCATATCTTCAGATAATATTTTA--AGAATCATATCTGAA
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1825620 52 -   2461138 CTTTGATTTCTAAATCATATCTTCAGATAAGATTTTA--AGAATCATATCTGAA
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3742675 52 -   3775709 CTTTGATTTTTAAATCATATCTGCAGATATGATTTTA--ACAATCATAAGAGAA
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE944318v1                   8446 33 -     12850 ---TGATTTTTAAA-----------AATACTATATTGATAAAATCAT-------
i tarSyr2.KE944318v1              C 0 C 0
s otoGar3.GL873592                  8648415 20 -   9938236 ------------------------AGAAA----------AAAATCATATGTGAA
i otoGar3.GL873592                C 0 I 7
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cebCap1.NW_016108146v1             269017  0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=30602.000000
s hg38.chr1_KI270711v1_random         21665 23 +     42210 GCATAAAGTGTGACACATAACAC
s gorGor5.CYUI01015145v1            3810767 22 -   8455952 GCATAAAG-GTGACACATAACAC
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121934953 23 + 225584828 GCATAAAATATGAGACATAAGAC
i rheMac8.chr1                    I 1322 C 0
s macFas5.chr1                    211837047 23 + 227556264 ACATAAAGTATGAGACATAAGAC
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1825672 23 -   2461138 ACATAAAGTATGAGACATAAGAC
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3742727 23 -   3775709 ACATAAAGCATGAGACATAAGCC
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE944318v1                   8479 21 -     12850 --GTAAAATATTGGGCATAGGAC
i tarSyr2.KE944318v1              C 0 C 0
s otoGar3.GL873592                  8648442 21 -   9938236 GTGTAAAATGTAAGAC--AAGAC
i otoGar3.GL873592                I 7 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cebCap1.NW_016108146v1             269017  0 +    407294 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=6876.000000
s hg38.chr1_KI270711v1_random         21688 2 +     42210 CA
s gorGor5.CYUI01015145v1            3810789 2 -   8455952 CA
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121934976 2 + 225584828 CA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211837070 2 + 227556264 CA
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1825695 2 -   2461138 CA
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3742750 2 -   3775709 CA
i colAng1.NW_012114988v1          C 0 C 0
s cebCap1.NW_016108146v1             269017 2 +    407294 CA
i cebCap1.NW_016108146v1          C 0 C 0
s tarSyr2.KE944318v1                   8500 2 -     12850 CA
i tarSyr2.KE944318v1              C 0 C 0
s otoGar3.GL873592                  8648463 2 -   9938236 CA
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=144834.000000
s hg38.chr1_KI270711v1_random         21690 55 +     42210 TAAGGCCATGAAGGAAATATGCCCAAATGCTAATAAAGTTTGTGTTAATTTAGAA
s gorGor5.CYUI01015145v1            3810791 54 -   8455952 TAAGGCCATGAAGGAAATATGCCCAAATGCTAATAAAG-TTGTGTTAATTTAGAA
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121934978 55 + 225584828 TAAGGCCATGAAGGAAGCATGCCCAAATACTAATCAAATTTCTGTTAAGTTAGAA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211837072 55 + 227556264 TAAGGCCATGAAGGAAATATGCCCAAATACTAATAAAGTTTGTGTTAATTTAGAA
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1825697 55 -   2461138 TAAGGCCATGAAGGAATTGTGCTCAAATACTAATAAAGCTTGTGTTAATTTAGAA
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3742752 55 -   3775709 CAAGACTATGAAGGAAATACGCCCAAATACTCACAAATTTTCTGTTAATTTAGAA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3630527 55 +  47448759 TAAGGCCATAAAAGAAATATGCACAAAGACTAATAACGTTTCCCTTATGCTAGAC
i calJac3.chr18                   I 1720 C 0
s cebCap1.NW_016108146v1             269019 55 +    407294 TAAGGCCGTAAAGGAAATATGCACAAAGACTAATAAAGTTTCTCTTATGTTTGAC
i cebCap1.NW_016108146v1          C 0 C 0
s tarSyr2.KE944318v1                   8502 54 -     12850 TAGGCCCAT-AAGGAAATATGCCCAAATACGAATAAATTTTATGTTAAATTAGAA
i tarSyr2.KE944318v1              C 0 I 130
s otoGar3.GL873592                  8648465 54 -   9938236 TAAAGCCATGAAGGAAATA-ATCCAAATACTAATAAAGTTTGTGTTAAATTGGCA
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=30743.000000
s hg38.chr1_KI270711v1_random         21745 13 +     42210 ACAGCAGAATGAA
s gorGor5.CYUI01015145v1            3810845 13 -   8455952 ACAGCAGAATGAA
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121935033 13 + 225584828 ACAGTAGAATGAA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211837127 13 + 227556264 ACAGTAGAATGAA
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1825752 13 -   2461138 ACAGTAGAATGAA
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3742807 13 -   3775709 ACACTAGAATGAA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3630582 13 +  47448759 ACAGTAGAATGAA
i calJac3.chr18                   C 0 I 322
s cebCap1.NW_016108146v1             269074 13 +    407294 ACAGTAGAATGAA
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8648519  9 -   9938236 ATAGAAGAA----
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e tarSyr2.KE944318v1                   8556 130 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=242228.000000
s hg38.chr1_KI270711v1_random         21758 117 +     42210 GAACTAATAGATagtgtttactctgtgccaataaatgttctaggagattgacaagaaatagctcatgtaattcactgcagcaatttacagaggtaggtattattgtagtaccctctg
s gorGor5.CYUI01015145v1            3810858 117 -   8455952 GAACTAATAGATagtgtttactctgtgccaataaatgttctaggagattgacaagaaatagctcatgtaattcactgcagcaatttacagaggtaggtattattgtagtaccctctg
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121935046 112 + 225584828 GAACTAATagg----gtttactctgtgccagcaactgttccaggaggtttgcaagcaataggttgtgtaattcattgcagcaatttacctaggtaggtattattataacaccc-atg
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211837140 117 + 227556264 GAACTAATAGATagtgtttactctgtgccaataaacgttctaggagattgacaagaaatagctcatgtaattcactgcagcaatttacagaggtaggtattattgtagtaccctatg
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1825765 117 -   2461138 GAACTAATAGATagtgtttactctgtgccaatacatgttctaggagattgacaagaaatagctcatgtaattcactgcagcaatttacagaggtagctattattgtagtaccctatg
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3742820 117 -   3775709 GAACTAATAGGTagtgtttacactgtgcccataaatgttctacgaggttgataagaaatagctcatataattcactgcagcaatttacagaggtcggtattactgtagtaccctatg
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3630917 117 +  47448759 GAACTAATAGACagtgtttactctgtgccaacaactgtcccaggaaagttacaagaaataggccatctaattcagtgcagcaattgacagaggtaggcattattatagtatcctaca
i calJac3.chr18                   I 322 C 0
s cebCap1.NW_016108146v1             269087 117 +    407294 GAACTAATACACagtgtttattccgtgccaacaactgtcccgggagagttacaatcaataggccatctggttcagtgcagcaattgacagaggtaggcgttattatagtaccctatg
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8648528  78 -   9938236 ---------------------------------------ctaagagatttacaagaagtatgtcacataattcatagcagatatttaaaaaggtaggtactatgatagctccaaatt
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e tarSyr2.KE944318v1                   8556 130 -     12850 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=11592.000000
s hg38.chr1_KI270711v1_random         21875 3 +     42210 aac
s gorGor5.CYUI01015145v1            3810975 3 -   8455952 aac
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121935158 3 + 225584828 aac
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211837257 3 + 227556264 aac
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1825882 3 -   2461138 aac
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3742937 3 -   3775709 aac
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3631034 3 +  47448759 aac
i calJac3.chr18                   C 0 C 0
s cebCap1.NW_016108146v1             269204 3 +    407294 aac
i cebCap1.NW_016108146v1          C 0 I 17
s tarSyr2.KE944318v1                   8686 3 -     12850 gac
i tarSyr2.KE944318v1              I 130 C 0
s otoGar3.GL873592                  8648606 3 -   9938236 aac
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=24277.000000
s hg38.chr1_KI270711v1_random         21878 16 +     42210 aggtgaggaaac--aggg
s gorGor5.CYUI01015145v1            3810978 18 -   8455952 aggtgaggaaactgaggg
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121935161 18 + 225584828 agatgaggaaattgaggc
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211837260 18 + 227556264 agatgaggaaactgaggt
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1825885 18 -   2461138 agatgaggaaactgaggg
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3742940 18 -   3775709 agatgaggaaatggaggg
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3631037 16 +  47448759 agatgacaaaactgag--
i calJac3.chr18                   C 0 I 2
s tarSyr2.KE944318v1                   8689 18 -     12850 gcatgaagaaacccaggc
i tarSyr2.KE944318v1              C 0 C 0
s otoGar3.GL873592                  8648609 16 -   9938236 agagcaggaaactggc--
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cebCap1.NW_016108146v1             269207 17 +    407294 I
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=96308.000000
s hg38.chr1_KI270711v1_random         21894 33 +     42210 acagaaaagacaagcaacttgGATGGAGCCCAG
s gorGor5.CYUI01015145v1            3810996 33 -   8455952 acagacaagacaagcaacttgGATGGAGCCCAG
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121935179 33 + 225584828 acagagaagacgagcaacttgGATGGAGCCCAG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211837278 33 + 227556264 acagacaagacaagcaacttgGATGGAGTCCAG
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1825903 33 -   2461138 acagacaagacaagcaacttgGATGGAGTCCAG
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3742958 33 -   3775709 acagacaggacaagcaacttggatagagcccag
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3631055 33 +  47448759 acaaacaaaagaagcaacttgGAGGGAGCTCAG
i calJac3.chr18                   I 2 C 0
s cebCap1.NW_016108146v1             269224 33 +    407294 acagagaaaagaagcaacttgGATGGAGCTCAG
i cebCap1.NW_016108146v1          I 17 C 0
s tarSyr2.KE944318v1                   8707 31 -     12850 acagagaagagaagcaac--GGCAGGAGCCCAG
i tarSyr2.KE944318v1              C 0 N 0
s otoGar3.GL873592                  8648625 28 -   9938236 acagagaagacaagCCTC-----CGGAGCCCAG
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=64926.000000
s hg38.chr1_KI270711v1_random         21927 34 +     42210 GAGACAGGCCCACGGTCTCTGCTCTGTACACTGC
s gorGor5.CYUI01015145v1            3811029 34 -   8455952 GAGACAGGCCCACGGTCCCTGCTCTGTACACTGC
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121935212 34 + 225584828 GAAACTGGCCCAAGGTTCCTGCTTTACACACTGC
i rheMac8.chr1                    C 0 I 403
s macFas5.chr1                    211837311 34 + 227556264 GATAGAGGCCCAGGGTCCCTGCTCTGCCCACTGC
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1825936 33 -   2461138 GATACAGGCCCA-GGTCCCTGCTCTGCCCACTGC
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3742991 34 -   3775709 gagacaggcccagtgTTCCTGCTCTGCACACTGC
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3631088 29 +  47448759 GAGACTGGCCCAGGGTCCCTCCTCTATGC-----
i calJac3.chr18                   C 0 C 0
s cebCap1.NW_016108146v1             269257 34 +    407294 GAGACTGGCCCAGGGTCCCTGCTCTATGCACTGC
i cebCap1.NW_016108146v1          C 0 I 1676
s otoGar3.GL873592                  8648653 33 -   9938236 GAGTCC-GCCCAGGGTGCCCGCTGTACACACCGC
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=90743.000000
s hg38.chr1_KI270711v1_random         21961 81 +     42210 ACTGCTATCTCCACACATTCTCGGGTGCGATCTTTCTTCCTCTTTAGGAACAAGACTCTGTGCCCCAGGAAGCAGGACTTC
s gorGor5.CYUI01015145v1            3811063 80 -   8455952 ACTGCTA-CTCCACACATTCTCGGGTGCGATCTTTCTTCCTCTTTAGCAACAAGACTCTGTGCCCCAGGAAGCAGGACTTC
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211837345 81 + 227556264 ACTACTACTTCCACACATTGTCGGGTGCGATCTTTCTTCCTCTTTAGGAACAAGAGCCTGTGCCCCAGGAAGCAGGACTTC
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1825969 81 -   2461138 ACTGCTACTTCCACACATTGTCGGGTGCGATCTTTCTTCCTCTTTAGGAACAAGAGCCTGTGCCCCAGGAAGCAGGACTTC
i cerAty1.NW_012001440v1          C 0 I 71
s colAng1.NW_012114988v1            3743025 80 -   3775709 ACTGCTACTTCCACACATTCTAGGGTGC-ATCTTTCTTCCTCTTTAGGAACAAAAGCCTGTGCCCCAAGAAACAGGACTTC
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3631117 80 +  47448759 ACTGCTGCCTTCACAAAGTCATGGGTGCCGTCGTTCTTCCTCTTTACCAACGAGAGCCTCTG-CAAAGACAGCAGGACGTC
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8648686 69 -   9938236 ---------TCTGAACAGCCCTGGGTGCTCGCTCTGCTGCTCCCGGGGAA-AAGAGTCTGT--TCCAGGAAGCAGGACTTC
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cebCap1.NW_016108146v1             269291 1676 +    407294 I
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e rheMac8.chr1                    121935246 403 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=9445.000000
s hg38.chr1_KI270711v1_random         22042 10 +     42210 ATTCTCACCA
s gorGor5.CYUI01015145v1            3811143 10 -   8455952 ACTCTCACCA
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211837426  9 + 227556264 -CTCTCACCA
i macFas5.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3743105 10 -   3775709 CCTCCCACCA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3631197 10 +  47448759 CCTCTGACCA
i calJac3.chr18                   C 0 I 2450
s otoGar3.GL873592                  8648755 10 -   9938236 TTTCTCACCA
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cerAty1.NW_012001440v1            1826050 71 -   2461138 I
e cebCap1.NW_016108146v1             269291 1676 +    407294 I
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e rheMac8.chr1                    121935246 403 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=1205.000000
s hg38.chr1_KI270711v1_random         22052 2 +     42210 AG
s gorGor5.CYUI01015145v1            3811153 2 -   8455952 AG
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211837435 2 + 227556264 GG
i macFas5.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3743115 2 -   3775709 GG
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8648765 2 -   9938236 GG
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cerAty1.NW_012001440v1            1826050 71 -   2461138 I
e cebCap1.NW_016108146v1             269291 1676 +    407294 I
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e rheMac8.chr1                    121935246 403 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=6759.000000
s hg38.chr1_KI270711v1_random         22054 57 +     42210 CTACATTCTGCttcttattcttatttttatttatcattatta--gtattatt-tttttaA
s gorGor5.CYUI01015145v1            3811155 60 -   8455952 CTACTCTCTGCtttttattcttatttttatttatcattattattttattattatttttaC
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211837437 39 + 227556264 GTACTCTCTGCttttt-------tatttatttat-------------ttgtt-ttttgac
i macFas5.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3743117 36 -   3775709 CTACTCTCTGCCttt----------tttctttgt-------------ttctt-ttttgat
i colAng1.NW_012114988v1          C 0 I 1
e otoGar3.GL873592                  8648767  0 -   9938236 C
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cerAty1.NW_012001440v1            1826050 71 -   2461138 I
e cebCap1.NW_016108146v1             269291 1676 +    407294 I
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e rheMac8.chr1                    121935246 403 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=-820.000000
s hg38.chr1_KI270711v1_random         22111 1 +     42210 -C
s gorGor5.CYUI01015145v1            3811215 1 -   8455952 -C
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211837476 1 + 227556264 g-
i macFas5.chr1                    C 0 C 0
e otoGar3.GL873592                  8648767 0 -   9938236 C
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e colAng1.NW_012114988v1            3743153 1 -   3775709 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cerAty1.NW_012001440v1            1826050 71 -   2461138 I
e cebCap1.NW_016108146v1             269291 1676 +    407294 I
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e rheMac8.chr1                    121935246 403 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=7750.000000
s hg38.chr1_KI270711v1_random         22112 19 +     42210 agtcttgccctgtcaccca
s gorGor5.CYUI01015145v1            3811216 19 -   8455952 agtcttgccctgtcgccca
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211837477 17 + 227556264 aatctt--cccgtcaccca
i macFas5.chr1                    C 0 I 1
s colAng1.NW_012114988v1            3743154 19 -   3775709 agtcttgccctgtcgccca
i colAng1.NW_012114988v1          I 1 C 0
e otoGar3.GL873592                  8648767  0 -   9938236 C
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cerAty1.NW_012001440v1            1826050 71 -   2461138 I
e cebCap1.NW_016108146v1             269291 1676 +    407294 I
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e rheMac8.chr1                    121935246 403 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=195917.000000
s hg38.chr1_KI270711v1_random         22131 256 +     42210 ggctggagtgcaatggcaaaatcttggctcactgcaacctcagcctcctgggttcaaaggattctcctgcctcagcctcctgaacaggggtgattacagtcacctgccaccacgcccatctactttttgtatttttagtggagatggggtttctccatgtttcccaggctggtctcaaactcctgacctcgtgatctgcccgcctcagcctcccaaagggctgggattacaggagtgagccaccatgcacggccCC
s gorGor5.CYUI01015145v1            3811235 255 -   8455952 ggctggagtgcaatggcaaaatcttggctcactgcaacctcagcctcctgggttcaaaggattctcctgcctcagcctcctgagcaggggtgattacagtcacctgccaccacgcccatctactttttgtatttttagtggagatggggtttctccatgttgcccaggctggtctcaaactcctgacctc-tgatctgcccgcctcagcctcccaaagtgctgggattacaggagtgagccaccatgcacggccCC
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211837495 256 + 227556264 ggctggagtgcaatggcgtgatcttggctcactgcaacctctgcctcctgggttcaaaagattctcctaccacagaccccggagtagctgggattacaggcacctgccaccacgcccagctaatttttgtatttttagtggagatgcagtttctccatgttgcccaggctagtctcaaactcctgacctcgtgatctgcccgcctcagcctctcaaaatgctgggattacaggagtgagccactgtgcacagccCC
i macFas5.chr1                    I 1 C 0
s cerAty1.NW_012001440v1            1826121 256 -   2461138 ggctggagtgcaatggcgcgatcttggctcactgcaacctccgcctcttgggttcaaaagattctcctgcctcagactcctgagtagctgggattataggtgcctcccaccatgcccagctaatttttgtattttcagtggagacgtggtttctccatgttgcccaggctggtctcaaactcctgacctcgtgatctgcccacctcagcctcccaaagtgctgggattacaggggtgagccactgtgcacagccCC
i cerAty1.NW_012001440v1          I 71 C 0
s colAng1.NW_012114988v1            3743173 256 -   3775709 ggctgaagtgcaatggcatgatcttggctcactgcaacctctgcctcctgggttcaaaggattctccagactcagcctcccgagtagctgggatttcaggcccccgccaccatgcccagctaacttttgtaattttagtagatacagggtctctccacgttacccaggatggaatcaaactcctgacctcgtgatccgcccgcctcagcctcccaaagtgctgggataacaagactgagccaccTTCCACAGCCCC
i colAng1.NW_012114988v1          C 0 C 0
e otoGar3.GL873592                  8648767   0 -   9938236 C
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cebCap1.NW_016108146v1             269291 1676 +    407294 I
e saiBol1.JH378257                  2808056 1244 -   4070394 I
e rheMac8.chr1                    121935246 403 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=7896.000000
s hg38.chr1_KI270711v1_random         22387 3 +     42210 TAC
s gorGor5.CYUI01015145v1            3811490 3 -   8455952 TAC
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121935649 3 + 225584828 TAC
i rheMac8.chr1                    I 403 C 0
s macFas5.chr1                    211837751 3 + 227556264 TAC
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1826377 3 -   2461138 TAC
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3743429 3 -   3775709 TAC
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3633657 3 +  47448759 TAC
i calJac3.chr18                   I 2450 C 0
s saiBol1.JH378257                  2809300 3 -   4070394 TAC
i saiBol1.JH378257                I 1244 C 0
e otoGar3.GL873592                  8648767 0 -   9938236 C
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cebCap1.NW_016108146v1             269291 1676 +    407294 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=34704.000000
s hg38.chr1_KI270711v1_random         22390 10 +     42210 TCCCTGCTCT
s gorGor5.CYUI01015145v1            3811493 10 -   8455952 TCCCTGCTCT
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121935652 10 + 225584828 TCCCTGCTCT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211837754 10 + 227556264 TCCCTGCTCT
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1826380 10 -   2461138 TCCCTGCTCT
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3743432 10 -   3775709 TCCCTGCTCT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3633660 10 +  47448759 TCCCTGCTCT
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2809303 10 -   4070394 TCCCTGCTCT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             270967 10 +    407294 TCCCTGCTCT
i cebCap1.NW_016108146v1          I 1676 C 0
e otoGar3.GL873592                  8648767  0 -   9938236 C
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=224837.000000
s hg38.chr1_KI270711v1_random         22400 91 +     42210 TGATGCTGTCACTTATAGATAGCACAGGTTCTATTAGGAGCAGACTCCTCTTGAAGCCCCTCAGAGCTGGTACTGGCTACTATCACCAAGT
s gorGor5.CYUI01015145v1            3811503 91 -   8455952 TGATGCTGTCACTTATAGATAGCACAGGTTCTATTAGGAGTAGACTCCTCTTGAAGCCCCTCAGAGCAGGTACTGGCTACTATCACCAAGT
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121935662 91 + 225584828 TGATGCTGTCACTTATGGATACCACAATTTCTATTAGGTGCAGACTCCTCTTTAAGCTACTTGGAGTTGGTACTGTGTGCTATCACCACGT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211837764 91 + 227556264 TGATGCTGTCACTTACAGATACCACAGGTTCTATTAGGAGCAGACACCTCTTGAAGTTCCTCAGAGCGGGTACTGGGTACTATCACCAACT
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1826390 85 -   2461138 TGATGCTGTCACTTACAGATACCACAGGTTCTATTAGGAGCAGACACCTCTTGAAGCTCCTCAGAGCGGGTACTGGGT------ACAAAGT
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3743442 91 -   3775709 TGATGCTGTCGGTTATAGATACCACAGGTTCTATTAGGAGCAAACTCCTCTTGACGCCCCTCACAGCGGGTACTGTGTACTATCACCAAAT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3633670 91 +  47448759 TGATGGTGCCACTTACAGAAAGCATAGGTTCTATTAGGAGCAAGGTCCCCTTTAAGCTCCTCACAGTGGGTACTGTCTGCTATCACCACGT
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2809313 91 -   4070394 TGATGATGCCACATACACATACCGCAGGTTCTATTAGGAGCAGGGTCCCCTTCGAGCTCCTCACAAGAGGTACTGTGTGCTATCATCGTGT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             270977 91 +    407294 TGATGGTGCCACTTACAGATACCACAGGTTCTATTAGGAGCAGGGTCCCCTTCTAGCTCCTCACAGTGGGTACTGTGTGCCAACACCATGT
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8648767 80 -   9938236 TGGTGGTGTCACCTATAGAGGTCACAGTTTCTGTTAGAAGCATACTCCTCATTAA--CCTTTAAAGCAGATGTTG--TGATACC-------
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=11162.000000
s hg38.chr1_KI270711v1_random         22491 4 +     42210 TTCC
s gorGor5.CYUI01015145v1            3811594 4 -   8455952 TTCC
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121935753 4 + 225584828 TTCC
i rheMac8.chr1                    C 0 I 811
s macFas5.chr1                    211837855 4 + 227556264 TTCC
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1826475 4 -   2461138 TTCC
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3743533 4 -   3775709 TTCC
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3633761 4 +  47448759 TTCC
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2809404 4 -   4070394 TTCC
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             271068 4 +    407294 TTAC
i cebCap1.NW_016108146v1          C 0 C 0
s tarSyr2.KE943985v1                 255904 4 -    294472 tctc
i tarSyr2.KE943985v1              N 0 C 0
s otoGar3.GL873592                  8648847 3 -   9938236 TTC-
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=14732.000000
s hg38.chr1_KI270711v1_random         22495 6 +     42210 CTCAGA
s gorGor5.CYUI01015145v1            3811598 6 -   8455952 CTCAGA
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211837859 6 + 227556264 CTCAGG
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1826479 6 -   2461138 CTCAGG
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3743537 6 -   3775709 CTCAGG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3633765 6 +  47448759 CCCAGG
i calJac3.chr18                   C 0 I 2381
s saiBol1.JH378257                  2809408 6 -   4070394 CCCAGT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             271072 6 +    407294 CCTAGT
i cebCap1.NW_016108146v1          C 0 C 0
s tarSyr2.KE943985v1                 255908 6 -    294472 ctcatg
i tarSyr2.KE943985v1              C 0 C 0
s otoGar3.GL873592                  8648850 6 -   9938236 CCCAGA
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e rheMac8.chr1                    121935757 811 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=105863.000000
s hg38.chr1_KI270711v1_random         22501 45 +     42210 GTCACTAGAACAGAGCTTTGCCTGTTGGGCCTCAACAGAAACTTG
s gorGor5.CYUI01015145v1            3811604 44 -   8455952 GTCACTAGAACAGAGCTTTGCCT-TTGGGCCTCAACAGAAACTTG
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211837865 45 + 227556264 GTCCCTAGAACAGAGCTTTGCCCACTGGGCCTCAACAGAAGCTTG
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1826485 45 -   2461138 GTCACTAGAACAGAGCTTTGACTATTGGGTCTCAACAGAATCTTG
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3743543 45 -   3775709 GTCCCTAGAACAGAGCTTTGCCTATTGGGCCTCAACAGAAGCTTG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3636152 45 +  47448759 GTTCCCAGAACACAGCTTTGCCTACTGGGCCTCAGCAGAAACTGG
i calJac3.chr18                   I 2381 C 0
s saiBol1.JH378257                  2809414 45 -   4070394 GTCCCTAGAACACAGCTCTGCTTACTGGGCCTCAGCAGAAACCGG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             271078 45 +    407294 GTCCCCAGAACACAGCTTTGCCTACTAGGCCTCAGCAGAAACCAG
i cebCap1.NW_016108146v1          C 0 C 0
s tarSyr2.KE943985v1                 255914 44 -    294472 -gtgttggcacagtgctttgcaaatgagtgcacagtaaaagtttg
i tarSyr2.KE943985v1              C 0 C 0
s otoGar3.GL873592                  8648856 44 -   9938236 GTATCCAGCTCAGTGCTTT-CCTATTTGACCTTCACAGAAGCTTG
i otoGar3.GL873592                C 0 I 773
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e rheMac8.chr1                    121935757 811 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=95564.000000
s hg38.chr1_KI270711v1_random         22546 39 +     42210 AACTGAATAAAAGTTCACTAGTCTCAGACATTTAGAACA
s gorGor5.CYUI01015145v1            3811648 39 -   8455952 AACTGAATAAAAGTTCACTAGTCTCAGACATTTAGAACA
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211837910 39 + 227556264 AACTGAATAAAAGTTCACTAGTCCCAGACATTTAGAACA
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1826530 39 -   2461138 TACTGAATAAAAGTTCACTAGTCCCAGACATTTAAAACA
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3743588 39 -   3775709 AACTGAATAAAAGTTCACTAGCCCGAGACATTTAGAACA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3636197 39 +  47448759 AACCAAATCGAAGTTCAGTAGCCTCAGACACGTAGACCA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2809459 39 -   4070394 AATTGAATGGAAGTTCAGTAGCCGCAGACATTTAGACCA
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             271123 39 +    407294 AACTGAATGGAAGTTCAGCAGCCTCAGACATTTAGACCA
i cebCap1.NW_016108146v1          C 0 C 0
s tarSyr2.KE943985v1                 255958 26 -    294472 AAATG-------------TAACCTGAGATATTCAAACCA
i tarSyr2.KE943985v1              C 0 C 0
s otoGar3.GL873592                  8649673 39 -   9938236 AATTGAATGGAAGTTCTTTAGTTCCAGAAATTTACATCA
i otoGar3.GL873592                I 773 T 8630
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e rheMac8.chr1                    121935757 811 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=162488.000000
s hg38.chr1_KI270711v1_random         22585 76 +     42210 ACAGACTAGATGTTATTTGTCTGCAGGATCTTACATGGTACAGAGAGGATTCTTGAAAACAT-GATTGAGCCTCTTG
s gorGor5.CYUI01015145v1            3811687 76 -   8455952 ACAGACTAGATGTTATTTGTCTGCAGGATCTTATATGGTACAGAGAGGATTCTTGAAAACAC-GATTGAGCCTCTTG
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211837949 76 + 227556264 ACAGACTAGATGTTACTTGTCTGCAGGATCTTATATGGTACAGACAGGATTCTTGAAAACAT-GATTGAGCCTCTTG
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1826569 76 -   2461138 ACAGACTAGATGTTATTTGTCTGCAGGATCTTATATGGTACAGAGAGGATTCTTGAAAACAT-GATGAAGCCTCTTG
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3743627 76 -   3775709 ACAGAATAGATGTTATTTGTCTGCCGGATCTTATATGGTACAGAGAGGATTCTTGAAAACAT-GATTTAGCCTCTTG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3636236 76 +  47448759 ACAGACTAGATGCTACTTGTCTGCAGGATCTTATATGGTACAGGGAGGATTCCTGTAAACAT-GATTTAGCCATTTG
i calJac3.chr18                   C 0 I 2051
s saiBol1.JH378257                  2809498 77 -   4070394 ACAGACTAGATGCTACTTGTCTGTAGGCTCTTATATGGTACAGAGAGGATTCCTGTAAACATGGATTTATCCTCTTG
i saiBol1.JH378257                C 0 I 3
s cebCap1.NW_016108146v1             271162 76 +    407294 ACAGACTAGATGCTACTTGTCTGCAGGATCTTATATGGTACAGAGAGGATTACTGTCAACAT-GATTTAGCCTCTTG
i cebCap1.NW_016108146v1          C 0 I 1282
s tarSyr2.KE943985v1                 255984 41 -    294472 ACAG------TGACATATGTTTGTAGAAGCTGACAC----------------------ACAT-TATTGAA-------
i tarSyr2.KE943985v1              C 0 C 0
e otoGar3.GL873592                  8649712 8630 -   9938236 T
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e rheMac8.chr1                    121935757 811 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=60687.000000
s hg38.chr1_KI270711v1_random         22661 29 +     42210 GAGAAAACAGGTCATTCTGTGCCTGTGTC
s gorGor5.CYUI01015145v1            3811763 29 -   8455952 GAGAAAACAGGTCATTCTGTGCCTGTGTC
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211838025 29 + 227556264 GAGAAAACAGGTCGTTCTGTGCCTGTGTC
i macFas5.chr1                    C 0 I 1
s cerAty1.NW_012001440v1            1826645 29 -   2461138 GAGAAAACAGGTCGTTCTGTGCCTGTGTC
i cerAty1.NW_012001440v1          C 0 C 0
s colAng1.NW_012114988v1            3743703 29 -   3775709 GAGAAAACAGGTCATTCTGTGCCTGTGTC
i colAng1.NW_012114988v1          C 0 I 1
s calJac3.chr18                     3638363 29 +  47448759 AGTAAAACAGGTGGTTCTGTGCCTGTGTC
i calJac3.chr18                   I 2051 C 0
s saiBol1.JH378257                  2809578 23 -   4070394 AGAAAAGCAGGTGGTT------CTGTGTC
i saiBol1.JH378257                I 3 C 0
s cebCap1.NW_016108146v1             272520 29 +    407294 AGGAAAACAGGCGGTTCTGTGCCTGTGTC
i cebCap1.NW_016108146v1          I 1282 C 0
s tarSyr2.KE943985v1                 256025 24 -    294472 -----AAAAGACAGTTTAGTGCCTGAACC
i tarSyr2.KE943985v1              C 0 C 0
e otoGar3.GL873592                  8649712 8630 -   9938236 T
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e rheMac8.chr1                    121935757 811 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11410891 4419 -  14060431 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=11997.000000
s hg38.chr1_KI270711v1_random         22690 13 +     42210 AGAAATCAATAAA
s gorGor5.CYUI01015145v1            3811792 13 -   8455952 AGAAATCAATAAA
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211838055 13 + 227556264 GAAAATCAACAAC
i macFas5.chr1                    I 1 C 0
s macNem1.NW_012017688v1           11415310 13 -  14060431 GAAAATCAACAAC
i macNem1.NW_012017688v1          I 4419 C 0
s colAng1.NW_012114988v1            3743733 11 -   3775709 GAAA--CCGTAAC
i colAng1.NW_012114988v1          I 1 C 0
s calJac3.chr18                     3638392 13 +  47448759 AGAAATTAATAGG
i calJac3.chr18                   C 0 I 299
s saiBol1.JH378257                  2809601 13 -   4070394 AGAAATCAATAGC
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             272549 13 +    407294 AGAAATCAATAGC
i cebCap1.NW_016108146v1          C 0 C 0
s tarSyr2.KE943985v1                 256049  6 -    294472 -AAGATT------
i tarSyr2.KE943985v1              C 0 C 0
e otoGar3.GL873592                  8649712 8630 -   9938236 T
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e rheMac8.chr1                    121935757 811 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=47063.000000
s hg38.chr1_KI270711v1_random         22703 26 +     42210 TGGCAGTTTAACTCTAGTCCCACCCC
s gorGor5.CYUI01015145v1            3811805 26 -   8455952 TGGCAGTTTAACTCTAGTCCCACCCC
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211838068 26 + 227556264 TGGGATTTGAACTCCAGTCCCACCCC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11415323 26 -  14060431 TGGGATTTGAACTCCAGTCCCACCCC
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3743744 26 -   3775709 TGAGATTTTAACTCTAGACCCATCCC
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3638704 26 +  47448759 TGGGATTTTAATCCCAGTCCCACACC
i calJac3.chr18                   I 299 C 0
s saiBol1.JH378257                  2809614 26 -   4070394 TGGGATTGTCACCCCAGTCCCACACC
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             272562 26 +    407294 TGGGATTATAACCCCAGTCCCACACC
i cebCap1.NW_016108146v1          C 0 C 0
s tarSyr2.KE943985v1                 256055 20 -    294472 ------TCTGTCTCTATTCCTCCCTA
i tarSyr2.KE943985v1              C 0 C 0
e otoGar3.GL873592                  8649712 8630 -   9938236 T
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208143055 4382 - 229774977 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e rheMac8.chr1                    121935757 811 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=301434.000000
s hg38.chr1_KI270711v1_random         22729 139 +     42210 CACC-TGATTGCAAACAT-GGAAAGTTGCTAAATATTTTGGGACCTCTG-TCTTCCAACTTTAACAAAATGTTA-------AAATACCCAT---TTCTGTTTTCCTAGAAGTATGGGGAGGATGACATTATTTTAGATGGAGAGAGCACTTA--------------------
s panPan2.chr1                    208147437 139 - 229774977 CACC-TGACTGCAAACAT-GGAAACTTGCTAAATACTTTGGTACCTCTG-ACTTCCAAATTTAACAAAATGTGA-------AAATGCCCAT---TTCTATTTTCCTAGAAGTATGGGAGGGTTGAACTTATTTTTGATGGAGAGAGCATTTA--------------------
i panPan2.chr1                    I 4382 C 0
s gorGor5.CYUI01015145v1            3811831 137 -   8455952 CACC-TGATTGCAAACAT-GGAAAGTTGCTAAATACTTTGGTACCTCTG-TCTTCCAACTTTAACAAAATGTTA-------AAATACCCAT---TTCTGTTTTCCTAGAAGTA--AGGAGGATGAAATTATTTTTGATGGAGAGAGCATTTA--------------------
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211838094 138 + 227556264 CACC-TGACTGCAAACA--GGAAAGTTACTAAATACTTTGGTACCTCTG-TCTTCCAACTTTAACAAAATGTTA-------AAATACCCAT---TTCTGTTTTCTTACAAGTACAGGAAGGAAGAAATTATTTTTGATGGAGAGAGCATTTA--------------------
i macFas5.chr1                    C 0 I 57645
s macNem1.NW_012017688v1           11415349 139 -  14060431 CATC-TGACTGCAAACAT-GGAAAGTTACTAAATACTTTGGTACCTCTG-TCTTCCAACTTTAACAAAATGTTA-------AAATACCCAT---TTCTGTTTTCTTACAAGTACAGGGAGGAAAAAATTATTTTTGATGGAGAGAGCATTTA--------------------
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3743770 138 -   3775709 CAAT-TGACTGCAAACA--TGGATGTTTCAAAATACTTTGGTACCTCTC-TCTTCCAACTTTAACAAAATATGA-------AAATACCCAT---TTCTATTTTCCTAGAAGTACAGGAAGGATTAAATTACTTCTGATGGAGAGAGAATTCA--------------------
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3638730 137 +  47448759 CACC-TTATTGCAGACATGGAAAAGTTGCTAAATACTTTGG--CCTCTG-TCTTCCATCTTTAACAAAATGTTA-------AAATACCCAT---TTCTATTTTC-TGCAAGTATGAGGAGGACGAAATTAATTTTGATGAAGAAACTGGTTA--------------------
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2809640 135 -   4070394 CACC-TTACTGCAGATGTGGAAAAGTTGCTAAACACTTTGG--CCTCCG-TCTTCCATCTTT-ACCAAATGTTA-------AAATACCCAT---TTCTATTTTC-TGCAAGTATGGGCAGAA-GAAATTACTTTTGATGAAGTCAGCAGTTA--------------------
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             272588 136 +    407294 CACC-TTACTGCAGATGTGGAAAAGTTACTAAATATTTTGG--CGTCTG-TCTTCCATTTTA-ACTAAATGTTA-------AAATACCCAT---TGCTATTTTC-TACAAGTATGGGAAGGATGAAATTAATTTTGATGAAGAGAGTGGTTA--------------------
i cebCap1.NW_016108146v1          C 0 C 0
s tarSyr2.KE943985v1                 256075 159 -    294472 CATCATCCTTGCAAACTT-------------TACCCCTTTGAGCTTCAGTTTTTCCATCCTCAACAAATTGCAAGTAAAATAAATAGTAATAAATACTTCCTTTCTGGAAGTATAGTCAGGAAAAAATTATTTTTTATGAAAAAAAGAAGAAGAAGGTCTGAAGATTGTTTT
i tarSyr2.KE943985v1              C 0 C 0
e otoGar3.GL873592                  8649712 8630 -   9938236 T
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e rheMac8.chr1                    121935757 811 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=21466.000000
s hg38.chr1_KI270711v1_random         22868 8 +     42210 GTTTCTCA
s panPan2.chr1                    208147576 8 - 229774977 GTTTCTCA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3811968 7 -   8455952 G-TTCTCA
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211895877 8 + 227556264 GTTTCTCA
i macFas5.chr1                    I 57645 C 0
s macNem1.NW_012017688v1           11415488 8 -  14060431 GTTCCTCA
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3743908 8 -   3775709 GTTTCTCA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3638867 8 +  47448759 GTTTCTCA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2809775 8 -   4070394 CTTACTCA
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             272724 8 +    407294 GTTTCTCA
i cebCap1.NW_016108146v1          C 0 I 295
s tarSyr2.KE943985v1                 256234 8 -    294472 GCTTCTCT
i tarSyr2.KE943985v1              C 0 C 0
e otoGar3.GL873592                  8649712 8630 -   9938236 T
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e rheMac8.chr1                    121935757 811 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=190827.000000
s hg38.chr1_KI270711v1_random         22876 107 +     42210 GAGAGAAGATAGGACTTCGTTCATCACTTTCGTGACGGTGAGCCTATAGATCTTACTGTATTTGTTCTGCTGGTTGGCCAGGAAGCAGGC---CAGTTGAGTTACAAAAC
s panPan2.chr1                    208147584 107 - 229774977 GTGAGAAGACAGGACATCATTCATCACTTTTGTGATGGTGAGCCTATAGAACTTACCATAATTATTCTGCCGGTTGGCCAGGAAGTAGGC---CACTTGAGTTACAAGAC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3811975 106 -   8455952 GAGAGAAGACAGGACATCATTCATCACTTTCGTGATGGTGAGCCTATAGATCTTACTGTATTTCTTCTGCC-GTTGGCCAGGAAGCAGGC---CAGTTGAGTTACAAAAC
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211895885 107 + 227556264 GAGAGAAGACAGGACATCATTCATCACTTTTGTGATTGTGAGCTTAGGGAACTTACTGTAAGTGTTCTGCCCCTTGGCCAGAAAGTAGGC---CACTTGAGTTACAAGAT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11415496 106 -  14060431 AAGAGAAGACA-GATATCATTCATCACTTTCATGATGGTGAGCCTAGAGATTGTACTGTATTTGTTCTGCCAGTTGGCCAGGAAGCAGGC---CACTTGAGTTACAATAA
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3743916 107 -   3775709 GAGAGAAGACAGGACATCATTCATCACTTTTGTGATGGTGAGCCTATGGAACTTACTGTAACTGTTCTGCCCCTTGGCCAGAAAGTAGGC---CAGTTGAGTTACAAGAT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3638875 106 +  47448759 -AGACAACACAGGACATCATTCATCAGTTTCGTGGTGGTGAACCTATAGAACTTACTGTAGGCCTTCAGCTGGTAGTTCAGGAAGTAGGC---CACCTGACTCAGAAGAA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2809783 105 -   4070394 -AGACAACACAGGACACCACTGATCACTTTCGTGGGGGT-CACCTACGGAACTTACTGTATGTCCTCTCCCGGCAGTTCAGGACGTAGGC---CACCTGGCTCATAAGAA
i saiBol1.JH378257                C 0 C 0
s tarSyr2.KE943985v1                 256242 110 -    294472 GAGGAAGGATGGATGATCATTTTTCACTTAAGGGACCATGCCCCTTTATGACTTACTGCATATCTTCAGGTGGTTGGCCAGGGTATAAGCAGTAGCTTTGGATATGAGAT
i tarSyr2.KE943985v1              C 0 C 0
e otoGar3.GL873592                  8649712 8630 -   9938236 T
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e cebCap1.NW_016108146v1             272732 295 +    407294 I
e rheMac8.chr1                    121935757 811 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=430443.000000
s hg38.chr1_KI270711v1_random         22983 173 +     42210 ATTTCTCTTTGAGGTTTCTGAACTGCTGTTTCTTCTCTGCCAGCTGGGGGCGCAATTTCTCATTCATTTCTAGAATGTTCATCTCTGCCTTCTCGCTGGACAAAGGGCCGGCTGATACCACCATGCTGACGTTTGTGGCAGAAGAGGTGGGGCCAGGGACTGGGGAGAAGAAA
s panPan2.chr1                    208147691 173 - 229774977 ATTTCTGTTTGAGGTTTCTGAACTGCTGTTTGTTCTCTGCCAGCTGGGGGCGCGATTTCTTGTTGATTTCTAGAATGTTCATCTCTGACTTCTGACTGGACCAAGGGCCGGCAGATACCACCATGCTGACGTTTGTGGCAGAAGAGGTGGGGCCAGGGACTGGGGAGAAGACA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3812081 172 -   8455952 ATTTCTCTTGGAGG-TTCTGAACTGCTGTTTCTTCTCTGCCAGCTGGGGGCGCAATTTCTCATTGATTTCTAGAATGTTCATCTCTGCCTTCTCGCTGGACAAAGGGCCGGCTGATACCACCATGCTGACGTTTGTGGCAGAAGAGGTGGGGCCAGGGACTGGGGAGAAGAAA
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121936568 173 + 225584828 ATTTCTCTTTGAGGTCTCAGAACTGCTGTTTGCTCTCTGCCAGCTGTAAGCGCAATTCTTGGTTGATTTCTAGGATGTTCATCTCTGCCCTTTCACTCGACAAAAGGCTGGCAGATACAGTCATGCTGACATTTGTGCCAGAAGAGATAGAGCCAGGGACTAGGGAGAAGAAA
i rheMac8.chr1                    I 811 C 0
s macFas5.chr1                    211895992 173 + 227556264 ATTTCTCCTTGGTGTTTATAAACTGACGTTTGTTCTCTGCCTGCTGGGGGTGCAGTTTCTCGTTGATTTCTAGAGTATTCATCTCTGACTTCTCACTGGACCAAGGGCCCGCAGATACCACCATGCTGACGTTTGTGGTAGAAGAGGTGGAGCCAGGGACTGGGGAGAAAAAA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11415602 173 -  14060431 ATTTCTCTTTTATGTTTCTGAACTGTTGTTTCTTCTCTGCCAGCTGGGGGCACAATTTCTCGTTGATTTCTAAAATGTTCATCTCTGCCTTCTCACTGGACTAAGGGCCGGCAGACACCACCATGCTGACGTTTGTGGCAGAAGAGGTGGAGCCAGGGACTGGGGAGAAGAAA
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3744023 173 -   3775709 ATTTCTCCTTGGTGTTTAGGAACTGATGTTTGTTCTCTCCCCGCTGGGGGAGCAATTTCTCATTGATTTCTAGAGTGTTCATCTCTGACTTTTCACTGGGCCAAGGGCCCGCAGATATCACCATGTTGACGTTTGTGGTAGAAGCGGTGGAGCCAGGGACTGGGGAGAAAAAA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3638981 173 +  47448759 GTCTATTTTTGCTGGCTCTGAAATTTGCTTTGTTTTCTTCCTGCTGGGAGCAGGATTTCTCAATGCCTTCTGCAACGTTCACCTCTGTGTTTTCTCTGGAAGGAGGCTTGCCAGATGCCCCTGTGCTGATGTTTGGGGCAGAACACAGATAGCCAGGGACTGGGGAGAAGAAA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2809888 173 -   4070394 GTCCATTTTTGCTGGCTCCGACATTCGGTTTGATTTCTTCCTGCTGGGGGCAGGATTTCTCAATGCTTTCTGCAACGTTGACCTCTGTGTATTTTCTGGAAGGAGGCCTGTCAGATGCCACCATGTTGACGTTTCGGGCAGAACACAGAAAGCCAGGGACTGGGGAGAAGAAA
i saiBol1.JH378257                C 0 C 0
s tarSyr2.KE943985v1                 256352 170 -    294472 ATTTCTTTGTGAGGTCTCGGAAGTTCTGTTTGCTTTTTTCCAGCTGAGAGCACAAGTACTGGTTGGCTTCCAGGATGTTCATTTCTTCTCTTGGATCTGAAAAAGAGGTGAGAGATACTACCATGCTGAAGCCTGTGGTAGGAT---TAGAGCCAGGACTTGGGAAGAAGAAA
i tarSyr2.KE943985v1              C 0 N 0
e otoGar3.GL873592                  8649712 8630 -   9938236 T
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e cebCap1.NW_016108146v1             272732 295 +    407294 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=42233.000000
s hg38.chr1_KI270711v1_random         23156 17 +     42210 GGCAAACACATGATGGG
s panPan2.chr1                    208147864 17 - 229774977 CCCAAACACACGATGGG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3812253 17 -   8455952 GGCAAACACATGATGGG
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121936741 17 + 225584828 CTCAAACACAAAATGGG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211896165 17 + 227556264 TCCAAACACATGATGGG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11415775 17 -  14060431 CGCCAACACGTGATGGG
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3744196 17 -   3775709 CCCAAACACATGATGGG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3639154 17 +  47448759 CCCAAACACATGATGGG
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2810061 17 -   4070394 CCCAAACGCACGATGGG
i saiBol1.JH378257                C 0 C 0
e otoGar3.GL873592                  8649712 8630 -   9938236 T
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e cebCap1.NW_016108146v1             272732 295 +    407294 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=110604.000000
s hg38.chr1_KI270711v1_random         23173 34 +     42210 TTAAAAACTGGTGAAATCAAATAGGCTTAATCAG
s panPan2.chr1                    208147881 34 - 229774977 TTAAAAACTGGTGAAATCAAATAGATTTAATCAG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3812270 34 -   8455952 TTAAAAACTGGTGAAATCAAATAGGCTTAATCAG
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121936758 34 + 225584828 TTGAAAACTGGTGAAATCAAATAGGTTTGATCAG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211896182 34 + 227556264 TTAATAACTGGTGAAATCAAATAGGTTGAATCAG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11415792 34 -  14060431 TTAAAAATTGGTGAAATCAAATAGGTTTAGTCAG
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3744213 34 -   3775709 TTAATAACTGGTGAAATCAAATAGGTTGAATCAG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3639171 34 +  47448759 TTAGAAACTGGTGACATCAAGTTGGTTTAATCGG
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2810078 34 -   4070394 TTAGAAACTGGTGACGTCGAATTGGTTTAATCGG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             273027 34 +    407294 TTAGAAACTGGTGACGTCAAATTGGTTTAATCGG
i cebCap1.NW_016108146v1          I 295 C 0
e otoGar3.GL873592                  8649712 8630 -   9938236 T
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201398416 4199 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=5500.000000
s hg38.chr1_KI270711v1_random         23207 1 +     42210 G
s panPan2.chr1                    208147915 1 - 229774977 G
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3812304 1 -   8455952 G
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121936792 1 + 225584828 G
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211896216 1 + 227556264 G
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11415826 1 -  14060431 G
i macNem1.NW_012017688v1          C 0 C 0
s papAnu3.chr1                    201402615 1 - 220367699 G
i papAnu3.chr1                    I 4199 I 13588
s colAng1.NW_012114988v1            3744247 1 -   3775709 G
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3639205 1 +  47448759 G
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2810112 1 -   4070394 G
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             273061 1 +    407294 G
i cebCap1.NW_016108146v1          C 0 C 0
e otoGar3.GL873592                  8649712 8630 -   9938236 T
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=42217.000000
s hg38.chr1_KI270711v1_random         23208 11 +     42210 ACTGAGGGATG
s panPan2.chr1                    208147916 11 - 229774977 ACTGAGAGATG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3812305 11 -   8455952 ACTGAGGGATG
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    121936793 11 + 225584828 ACTGAGGGATG
i rheMac8.chr1                    C 0 I 11850
s macFas5.chr1                    211896217 11 + 227556264 ACTGAGGGATG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11415827 11 -  14060431 ACTGAGGGATG
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3744248 11 -   3775709 ACTGAGGGGTG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3639206 11 +  47448759 ACTGAGCGATG
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2810113 11 -   4070394 ACTGAGGGACG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             273062 11 +    407294 ACTGAGGGATG
i cebCap1.NW_016108146v1          C 0 C 0
e otoGar3.GL873592                  8649712 8630 -   9938236 T
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=10152.000000
s hg38.chr1_KI270711v1_random         23219 3 +     42210 TCA
s panPan2.chr1                    208147927 3 - 229774977 TCA
i panPan2.chr1                    C 0 T 4875
s gorGor5.CYUI01015145v1            3812316 3 -   8455952 TCA
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211896228 3 + 227556264 TCA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11415838 3 -  14060431 TCA
i macNem1.NW_012017688v1          C 0 T 4950
s colAng1.NW_012114988v1            3744259 3 -   3775709 TCA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3639217 3 +  47448759 TCA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2810124 3 -   4070394 TCA
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             273073 3 +    407294 TCA
i cebCap1.NW_016108146v1          C 0 C 0
e otoGar3.GL873592                  8649712 8630 -   9938236 T
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=231925.000000
s hg38.chr1_KI270711v1_random         23222 134 +     42210 CTGGCAGCCTTGTCTACTTATTTGAAGATGATGTTTCCCTGGTTTCACTCTTGTCATCTCCAGTCTTGATCTCCTTTAAGTCAACTTGTCTTAGCTATGCAGTCACCTTGAAACCAAGACATAAACACTTCTAC
s gorGor5.CYUI01015145v1            3812319 134 -   8455952 CTGGCAGCCTTGTCTACTTATTTGAAGATGTTGTTTCCCTGGTTTCACTCTTGTCATCTCCAGTCTTGATCTCCTTTAAGTCAACTTGTCTTAGCTATGCAGTCACCTTGAAACCAAGACATAAACACTTCTAC
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211896231 134 + 227556264 CTGACAGCCTCGTCCACTGATTTGAAGATGCTGTTTCCCTGGTTTCACTCTTCTCATCTCCACTCTTGATCTCCTTTAAGTCAACGTGTCTGAGCTATGCAGTCACCTTGAAATCAGGACACAAACACTTCCAC
i macFas5.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3744262 134 -   3775709 CTGACAGCCTTGTCCACTGATTTGAAGATGCTGTTTCCCTGGTTTCACTCTTCTCATCTCCACTGTTGATCTCCTTTAAGTCAACTTGTCTGAGCTACGCAGTCACCTTGAAACCAGGACACAAACACTTCCAC
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3639220 134 +  47448759 CTGACAGCCTTGCCTGTTGATTTGAAGATGTTCTTTCCCTGCTTTTACTCTTCTTACCTCCTCTCTCATTCTCTTTAAAGTCAACTTGTCTTAACTACTCAGTCACCTTGAAACCAGGAAATTAACACTTCTAC
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2810127 133 -   4070394 CCGACGGCCCTGCCTATTGATTTGAAGATGTCGTTTCCCCACTTTTACTCTTCTTACCTCCTCTCTCGATCTCCTTCAAA-CAACTTGTCTTAGCTACTCAGTCACCCTGAAACCTGGAAATAAACCCTTCTGT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             273076 134 +    407294 CTGACAGCCTTGCCTATTGAGTTGAAGATGTCATTTCCCTGCTTTTCCCCTTCTCATCTCCACTCTCAATCTCCTTAAAGTCAACTGGTCTTAACTACTCAGTCACCTTGAAACCTGGAAATAAACACGTCTAC
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  1294914 132 +   9938236 CCAGCAGCCTTGCCTATATATTTGGAGATGCTGTCACCCTGGTTTCACTGCTGTCAGCCCCAGTCTCTATCTCCT--AAATTGGCTTTTCTTAGCTAAGCAGTCAGCTTAAATTGAGCACATGCACACATCTGC
i otoGar3.GL873592                n 8630 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016832643v1                369   0 -      1152 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11415841 4950 -  14060431 T
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=3791.000000
s hg38.chr1_KI270711v1_random         23356 5 +     42210 ACTTT-
s gorGor5.CYUI01015145v1            3812453 5 -   8455952 ACTTT-
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211896365 4 + 227556264 -TTTT-
i macFas5.chr1                    C 0 I 1
s nasLar1.chr1                    197953296 4 - 215897965 -CCTT-
i nasLar1.chr1                    I 2608 I 895
s colAng1.NW_012114988v1            3744396 4 -   3775709 -CATT-
i colAng1.NW_012114988v1          C 0 I 1
s calJac3.chr18                     3639354 4 +  47448759 -CTTT-
i calJac3.chr18                   C 0 I 1
s saiBol1.JH378257                  2810260 4 -   4070394 -CTTT-
i saiBol1.JH378257                C 0 I 1
s cebCap1.NW_016108146v1             273210 4 +    407294 -TTTT-
i cebCap1.NW_016108146v1          C 0 I 1
s otoGar3.GL873592                  1295046 5 +   9938236 -ATTTA
i otoGar3.GL873592                C 0 C 0
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11415841 4950 -  14060431 T
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=16192.000000
s hg38.chr1_KI270711v1_random         23361 11 +     42210 TCTTGCTTATA
s gorGor5.CYUI01015145v1            3812458 10 -   8455952 TCTTGCTTAT-
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211896370 11 + 227556264 TCTTGCTTAGA
i macFas5.chr1                    I 1 C 0
s colAng1.NW_012114988v1            3744401 11 -   3775709 TCTTGCTTACA
i colAng1.NW_012114988v1          I 1 C 0
s calJac3.chr18                     3639359 11 +  47448759 TCTTGCTTATG
i calJac3.chr18                   I 1 C 0
s saiBol1.JH378257                  2810265 11 -   4070394 TCTTGCTTATA
i saiBol1.JH378257                I 1 C 0
s cebCap1.NW_016108146v1             273215 11 +    407294 TCTTGCTTATA
i cebCap1.NW_016108146v1          I 1 T 79389
s otoGar3.GL873592                  1295051  6 +   9938236 TCTTGC-----
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197953300 895 - 215897965 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11415841 4950 -  14060431 T
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=6327.000000
s hg38.chr1_KI270711v1_random         23372 4 +     42210 AGTT
s gorGor5.CYUI01015145v1            3812468 4 -   8455952 AGTT
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211896381 4 + 227556264 AGTT
i macFas5.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3744412 4 -   3775709 AGTT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3639370 4 +  47448759 AGTT
i calJac3.chr18                   C 0 I 18208
s saiBol1.JH378257                  2810276 4 -   4070394 AGTT
i saiBol1.JH378257                C 0 I 1066
s otoGar3.GL873592                  1295057 2 +   9938236 --TT
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197953300 895 - 215897965 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016832643v1                369 0 -      1152 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11415841 4950 -  14060431 T
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=43621.000000
s hg38.chr1_KI270711v1_random         23376 70 +     42210 TCTATAAAGCAAGGCTTGGCCCTGAGATTTTTACCCCATGAGTGGCCAATGTTTCTGTGTAGCACAAAAG
s gorGor5.CYUI01015145v1            3812472 70 -   8455952 TCTATAAAGCAAGGCTTGGCCCTGAGATTTTTACCCCATGAGTGGCCAATGTTTCTGTGTAGCACAAAAG
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211896385 70 + 227556264 TCTATAAAGCAAGGCTGGGCTCTGAGCTTTTTACCCCATGAGGGGCCAATGTTTCTGTGTAGCTCAAGAG
i macFas5.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3744416 70 -   3775709 TCTATAAAGCAAGGCTGGGCTCTGAGCTTTTTACCCCATGAGTGGCCAATGTTTCTGTGTAGCTCAAGAG
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  1295059 55 +   9938236 TTCATGAAGCAAGACTGGGCCTTTA-----------TATGAG----CAATGTTTCTGTGAAACACCACAG
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016832643v1                369  0 -      1152 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11415841 4950 -  14060431 T
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=398.000000
s hg38.chr1_KI270711v1_random         23446 1 +     42210 G
s gorGor5.CYUI01015145v1            3812542 1 -   8455952 A
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211896455 1 + 227556264 A
i macFas5.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3744486 1 -   3775709 A
i colAng1.NW_012114988v1          C 0 C 0
s rhiBie1.NW_016834311v1               2139 1 -      2279 g
i rhiBie1.NW_016834311v1          n 0 n 0
s otoGar3.GL873592                  1295114 1 +   9938236 A
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935 0 - 228573443 C
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11415841 4950 -  14060431 T
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=5130.000000
s hg38.chr1_KI270711v1_random         23447 10 +     42210 TTTCATTTTG
s gorGor5.CYUI01015145v1            3812543 10 -   8455952 TTTCATTTTG
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211896456 10 + 227556264 ttgttttttg
i macFas5.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3744487 10 -   3775709 Ctgttttttg
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  1295115  9 +   9938236 -TTCATTTTG
i otoGar3.GL873592                C 0 n 0
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11415841 4950 -  14060431 T
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=52613.000000
s hg38.chr1_KI270711v1_random         23457 134 +     42210 CTTTTTTAA-Tttttttctt---------------ttttggttttttgttttttgtttgagacggagtctcactctgtcacgcaggctgcagtgcagaggcacaatctcagctcactgccacctctgcctcccgggttcaagcgattctc
s gorGor5.CYUI01015145v1            3812553 138 -   8455952 CTTTTTTAA-TTTTTTTCTtt---------ttttgttttgtttttttgttttttgtttgagacggagtctcactctgtcacgcaggctgcagtgcagaggcacaatctcagctcactg-caactctg-ctcctgggttcaagcgattctc
i gorGor5.CYUI01015145v1          C 0 I 157
s macFas5.chr1                    211896466 142 + 227556264 tttcgttaa-tttttttgtttgattggttggttgGttttggttttttatgttttgtttgagggggagtctcactgtgtcgcccaggctg-------gtggcacgatctcagctcactgcaacctctgcctcctgggttcaagtgattctc
i macFas5.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3744497 150 -   3775709 tttcgttaattttttttgtttgattggttggttgGttttgtttttttatgttttgtttgagaaggagtctcactgtgttacccaggctggagtgcagtggcacgatctcagctcactgcaacctctgcctcccgggttcaagtgattctc
i colAng1.NW_012114988v1          C 0 C 0
e otoGar3.GL873592                  1295124   0 +   9938236 I
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11415841 4950 -  14060431 T
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=39355.000000
s hg38.chr1_KI270711v1_random         23591 175 +     42210 atccctcagcctgccaaacatctgggattacaagcgccaagtaacatgccagcta-atttttgtatttttagtagagatggggtttcgccatcttggacaggctggtttcgaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggatta-agatgtgagcc-
s macFas5.chr1                    211896608 177 + 227556264 atgcgtcagcctcccaagtagctgggattacaggcaccaaccaccatgccagcta-ttttttgtatttttagtagagatgcaatttcgccatgttggccaggctgctttcgaactcctgacctcaggtgatccgcccaccttgtcctcccaaagtgctgggattacagatgtgagccC
i macFas5.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3744647 177 -   3775709 gtgcgtcagcctcccaaatagctgggattacaggcatcaaccaccatgccagctatttttttgaatttttagtagagatgcaatttcgccatgttggccaggctgctttcgaactcctgacctcaggtgatccgcccacctcgacctcccaaagtgctgggattacagatgtgagcc-
i colAng1.NW_012114988v1          C 0 I 15
e otoGar3.GL873592                  1295124   0 +   9938236 I
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e gorGor5.CYUI01015145v1            3812691 157 -   8455952 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11415841 4950 -  14060431 T
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=1379.000000
s hg38.chr1_KI270711v1_random         23766 19 +     42210 agcacccctggtcAGAGAC
s macFas5.chr1                    211896785 19 + 227556264 AGCGACCCTGGCCAGAGAC
i macFas5.chr1                    C 0 I 5642
e otoGar3.GL873592                  1295124  0 +   9938236 I
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e gorGor5.CYUI01015145v1            3812691 157 -   8455952 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3744824 15 -   3775709 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11415841 4950 -  14060431 T
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=0.000000
s hg38.chr1_KI270711v1_random         23785 1 +     42210 A
e otoGar3.GL873592                  1295124 0 +   9938236 I
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e gorGor5.CYUI01015145v1            3812691 157 -   8455952 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3744824 15 -   3775709 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e macFas5.chr1                    211896804 5642 + 227556264 I
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11415841 4950 -  14060431 T
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=91.000000
s hg38.chr1_KI270711v1_random         23786 1 +     42210 t
s otoGar3.GL873592                  8641082 1 -   9938236 t
i otoGar3.GL873592                T 8630 C 0
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e gorGor5.CYUI01015145v1            3812691 157 -   8455952 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3744824 15 -   3775709 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e macFas5.chr1                    211896804 5642 + 227556264 I
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11415841 4950 -  14060431 T
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=27514.000000
s hg38.chr1_KI270711v1_random         23787 230 +     42210 tttttttttttttttttgagatggagtctcgctctgtctcccaggctggagtgcagtggcacaatctaggctcactgtaagctccggttcctgggttcatgccattctcctgccacagcctcccgagtagctgggactacaggcgcccaacaccgcgcccagctaatttttttttttttttgtatttttagtaacgacggggtttcaccgtgttagccaggat----------ggtctcg
s macFas5.chr1                    211902446 219 + 227556264 ttttttatgttttgtttgagagggagtctcactctgtcgcccaggctggagtgcagtggcacgatctcagctcactgcaacctctacctcctgggttcaagtgattttcgtggctcagcttcccaagtagctgggattacaggcacaaaccaccatgcc-agcta----------ttttttgtatttttagtagagatgcaatttcgccatgttggccaggct----------gctttcg
i macFas5.chr1                    I 5642 I 1
s otoGar3.GL873592                  8641083 211 -   9938236 tttttttttttttcttagagacagagtctcaccctatcacccttggtagagtgccatggcatca-cacagctcgcagcaacctccaactccccggcccagg-gattctcctgccccagcctcccgagtagctgggaccacaggcacctgccacagcgcccagcca----------ttttttgt--------------tgcaatttgaccagg---gccaggctccaacccgccacccttg
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e gorGor5.CYUI01015145v1            3812691 157 -   8455952 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3744824  15 -   3775709 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11415841 4950 -  14060431 T
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=-2026.000000
s hg38.chr1_KI270711v1_random         24017 2 +     42210 --at
s gorGor5.CYUI01015145v1            3812848 2 -   8455952 --at
i gorGor5.CYUI01015145v1          I 157 C 0
s macFas5.chr1                    211902666 1 + 227556264 --a-
i macFas5.chr1                    I 1 C 0
s otoGar3.GL873592                  8641294 2 -   9938236 gt--
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3744824 15 -   3775709 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1                    107361573 10892 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e macNem1.NW_012017688v1           11415841 4950 -  14060431 T
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=27255.000000
s hg38.chr1_KI270711v1_random         24019 75 +     42210 ctcctgacctc--gtgatccacccgccccggcctcccaaagtgctgggattacatgtgtgagccaccgcgcccggcc
s gorGor5.CYUI01015145v1            3812850 75 -   8455952 ctcctgacctc--gtgatccacccgccccggcctcccaaagtgctgggattacatgtgtgagccaccgcgccaggcc
i gorGor5.CYUI01015145v1          C 0 C 0
s ponAbe2.chr1_random               9205839 72 +  35968885 ctcctgacctc--gtgatccacc--gctcagcctcccaaagtgct-ggattacagatgtgagccagcgtccctggcC
i ponAbe2.chr1_random             n 10892 n 10892
s macFas5.chr1                    211902667 77 + 227556264 ctcctgacctcaggtgatctgcccacctcaccctcccaaagtgctgggattacagatgtgagccagcgaccctggcc
i macFas5.chr1                    C 0 I 1
s otoGar3.GL873592                  8641296 43 -   9938236 atatggggctg--gcgctccacccac--------------------------------tgagccataggcaccaccc
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3744824 15 -   3775709 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e macNem1.NW_012017688v1           11415841 4950 -  14060431 T
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=128873.000000
s hg38.chr1_KI270711v1_random         24094 300 +     42210 GAGACTT---CTTATTAATAGCTGAGACAAGCCAATGAAAAGGAGAGA--GAGTCTAGCCTGAGAGGAGCGAACCAGGGTGGGAGGATCGTctcagccgatcctcccacctaagtctcctgagcagttgggactataggcacgcagcaccatacctgcctaattttttgtattctttgtaaagatgggtttcaccatattgtccaggctggt--cttc-----aactcctgaactcaagtcatcctcccacttgggccttccaaagtgctgtgattatacgtgtgagtcacagcacctagcTCCATCCTAGT
s gorGor5.CYUI01015145v1            3812925 300 -   8455952 GAGACTT---CTTATTAATAGCTAAGACAAGCCAATGAAAAGGAGAGA--GAGTCTAGCCTGAGAGGAGTGAACGAGGGTGGGAGGATCGTctcagccgatcctcccacctaagtctcctgagcagttgggactataggcatgcagcaccatgcctgcctaattttttgtattctttgtaaagatgggtttcaccatattgtccaggctggt--cttc-----aactcctgaactcaagtcatcctcccacttgggccttccaaagtgctgtgattatatgtgtgagtcacagcacctagcTCCATCCTAGT
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211902745 300 + 227556264 GAGACTT---CTTATTAACAGCTAAGACAAGCCAATGAAAAGGAGAGA--GAGTCTAGCCTGAGAAAAGTGAATGAGGGTGGGAGGATCATCTGAGCcaatccttgcacctaagcctcctgagcagttgggactataggggcaaaggaacatgcctggctaatgttttgtattctttgtaaagatgggtttcaccatattctccagtctgct--cttg-----aactcctgaattcaaatgatcctcccacttgggcctcccaaagtgctgcgaatatatatgtcagtcaccgcAGCTAGCTTCATCCTAGT
i macFas5.chr1                    I 1 C 0
s colAng1.NW_012114988v1            3744839 300 -   3775709 GAGACTT---CTTATTAACAGCTAAGACAAGCCAATGAAAAGGAGACA--GAGTCTAGCCTGAGAAAAGTGAATGAGGGTGGGAGGATCATCTGAGCcaattctcacacctaagcctcctgagcagttgggagtataagggcaaaggaacatgcttggctaatgttttgtattctttgtaaagatgggtttcaccatattctccagcctgct--cttg-----aactcctgaactcaaatgatcctcccacttgggcctcccaaagtgctgcgaatatatgtgtgagtcaccaccccTAGTTCCATCCTAGT
i colAng1.NW_012114988v1          I 15 C 0
s otoGar3.GL873592                  8641339 199 -   9938236 GAAATTCACATTTTTTGAGAAGGAAAATGAAACATCACACATGAGATGACAAGTTCAATCTAAATTAAG------AGGACTGATGGAT-----------ATACCCCGCCCTCA---TGCTGCGTAGGTGGG---------------------------------------------TGTGAAGTTG----TCAAGTCAATCTTGAGTCTGGTGACTTCCCAGAGACTCCTTGGCTCATGGGAT------------GTCTTT--------------------------------CTTCAAACACAATCCCAGA
i otoGar3.GL873592                C 0 I 2048
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11415841 4950 -  14060431 T
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=65472.000000
s hg38.chr1_KI270711v1_random         24394 123 +     42210 TTCTGACTAAA-ACAATA------TGTGCGTATACAGCCTGTCCTCAGAATTGATCTTCCATAGCCTAGACAGAGGTATGAGACACAAGGAAAATAGAGGCTACCTGGGAGAATGTTTACAGCATCCTGA
s gorGor5.CYUI01015145v1            3813225 129 -   8455952 TTCTGACTAAA-ACAATAACAATATGTGTATATACAGCCTGTCCTCAGAATTGATCTTCCATAGCCTAGACAGAGGTATGAGACACAAGGAAAATAGAGGCTACCTGGGAGAATGTTTAGAGCATCCTGA
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211903045 123 + 227556264 TTCTGAGTAAA-CCAATA------TGTACCTATACGGCCTGTACTCAGAATGGATCTTCCGTAGCCTAGACAGAGGTATGAGACACAAGGAAAATAGAGGCTACCTGGGACAAGGTTTAGAGCATCCTGC
i macFas5.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3745139 123 -   3775709 TTCTGAGTAAA-CCAATA------TGTACGTATACAGCCTGTCCTCACAATGGATCTCCCGTAGCCTAGACAGAGGTATGAGACACAAGGAAAATAGAGGCTACCTGGGAGAAGGTTTAGAGCATCCTGC
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8643586 105 -   9938236 TTCTGATTCCATCCAATA------CGT--CTGCAGGGCCTGCCTTTGGAATAGACCTTACTAAGCCTAGACACAAGCATAGGCCACTGGAAGAATAT-TGCTACTT----------------CTTCCTCA
i otoGar3.GL873592                I 2048 C 0
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e macNem1.NW_012017688v1           11415841 4950 -  14060431 T
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=21703.000000
s hg38.chr1_KI270711v1_random         24517 37 +     42210 CATTCATCATGAGAGGATTCTCTGTCTACAACCAGAG
s gorGor5.CYUI01015145v1            3813354 37 -   8455952 CATTCATCATGAGAGGATTCTCTGTCTACAACCAGAG
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211903168 37 + 227556264 CATCCATCTGGAGACGATCCACGGTCTATAAGCAGAG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11410891 31 -  14060431 CACTCATCATGAAAGGAT---GAGTCAATG---AGAG
i macNem1.NW_012017688v1          T 4950 C 0
s colAng1.NW_012114988v1            3745262 37 -   3775709 CGTCCATCAGGAGACGATTCACGGTCTATAAGCAGAG
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8643691 34 -   9938236 ---TCATGGTGGCAAGGTTCACTGTCTACACCCAGAG
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=1179.000000
s hg38.chr1_KI270711v1_random         24554 1 +     42210 T
s gorGor5.CYUI01015145v1            3813391 1 -   8455952 T
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211903205 1 + 227556264 T
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11410922 1 -  14060431 T
i macNem1.NW_012017688v1          C 0 C 0
s nasLar1.chr1                    197954195 1 - 215897965 T
i nasLar1.chr1                    I 895 I 9306
s colAng1.NW_012114988v1            3745299 1 -   3775709 T
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8643725 1 -   9938236 C
i otoGar3.GL873592                C 0 C 0
e calJac3.chr18                     3639374 18208 +  47448759 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=24242.000000
s hg38.chr1_KI270711v1_random         24555 35 +     42210 TGAGTTGACTTTGTCTTCCTCAAATGTGATGTTGA
s gorGor5.CYUI01015145v1            3813392 35 -   8455952 TGAGTTGACTTCGTCTTCCTCAAATGTGATTTTGA
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211903206 35 + 227556264 TGAGTCCACTTGGTCTTCCTCAAATGTGATTTTGG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11410923 35 -  14060431 TGAGTCGACTTCATCTTCCACAAATGTGATCTTGG
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3745300 28 -   3775709 CAAG-------GGTCTTCCTTAAATGTGACTTTGG
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8643726 31 -   9938236 -GCAGTGACT---TCTTCCCCAAATGGGAATTTGG
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panPan2.chr1                    208147930 4875 - 229774977 T
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=9981.000000
s hg38.chr1_KI270711v1_random         24590  9 +     42210 -TGTTCTTGT
s panPan2.chr1                    208143055  9 - 229774977 -TGTTCCCGT
i panPan2.chr1                    T 4875 C 0
s gorGor5.CYUI01015145v1            3813427  9 -   8455952 -TGTTCTTGT
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211903241  9 + 227556264 -AGTTCTTGT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11410958  9 -  14060431 -TATTCCTGT
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3745328  9 -   3775709 -AGTTCTTGT
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8643757 10 -   9938236 GAGCTGCTGT
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e cebCap1.NW_016108146v1             273226 79389 +    407294 T
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=134502.000000
s hg38.chr1_KI270711v1_random         24599 80 +     42210 GAGGCTGGTTGGAGTCACAAGGGCCGTGGCTATTTGAACAAGTGATGGCACATTCCTCCAGTGAGTCCTCAGGGACTTTG
s panPan2.chr1                    208143064 79 - 229774977 AAGGCTGGTTGGACTCACAAGGGTGGTGGCTATTTGAACAAGTGATGGCACACTCCTCCAGTGAGTCCTCAGGGACTCC-
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3813436 80 -   8455952 GAGGCTGGTTGGAGTCACAAGGGCCGTGGCTATTTGAACAAGTGATGGCACATTCCTCCAGTGAGTCCTCAGGGACTTTG
i gorGor5.CYUI01015145v1          C 0 C 0
s macFas5.chr1                    211903250 80 + 227556264 GAGGCTGGTTGGACTCAGAAGGGCCATAGCTATTTGAACAAGTGACGGCACATTCCTCCACTGAGTCCTCAGGGACTTCC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11410967 80 -  14060431 GTGGCTGGTTGGAATCACAAGGAACATGGCTATTTGAACAAGTGACGGCACATTCCTCCAGTGAGTCCTCAGGGACTTCC
i macNem1.NW_012017688v1          C 0 C 0
s colAng1.NW_012114988v1            3745337 80 -   3775709 GAGGCTGGTTGGACTCAGAAGGGCCATAGCTATTTGAACAACTGATGGTACATTCCTCCACTGAGTCCTCAGGGACTTCC
i colAng1.NW_012114988v1          C 0 C 0
s cebCap1.NW_016108146v1             193837 80 +    407294 GAGGCTGGCTGGAGTCAGAAGGGCCGTAGATATTTGAACGAGTGATGACACATTCCTCCGGTGAGTCTTCAAGGACTCTC
i cebCap1.NW_016108146v1          T 79389 C 0
s otoGar3.GL873592                  8643767 71 -   9938236 AAGGCTGGTCCTAGTCA----GGCTGGGGCAAATTCAAAGAGTGAAAG-ATGCTCCTCCAGTGAATCC---AGGCCTCC-
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989  0 -   1325925 C
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    121936804 11850 + 225584828 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=385822.000000
s hg38.chr1_KI270711v1_random         24679 140 +     42210 CTTTCTTCAGCCTTCTGCACCTCCCTGATGAGCCAGGTGGGACAGAGATGACAGAAGATTAAACACAGAGGGATTGGACCCCAGGGAGTCCTAGCTGGTTTTGACAGGCGGCATTAAGACAGTGG-TCCCAGAAAGCAAAA
s panPan2.chr1                    208143143 140 - 229774977 TTTTCTTCAGCCTTCTGCACCTCCCTGATGAGCCAGGTGGGATAGAGATGACAGAAGACTAAACACAGAGGGATTGGACACCAGGGAGTGCTAGCTGGTTTTGACAGGAGGCATTAAGAGAGTGG-TCCAAGAAAGCAAAC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3813516 140 -   8455952 CTCTCTTCAGCCTTCTGCACCTCCCTGATGAGCCAGGTGGGACAGAGATGACAGAAGATTAAACACAGAGGGATTGGACCCCAGGGAGTCCTAGCTGGTTTTGACAGGCGGCATTAAGAGAGTGG-TCCCAGAAAGCAAAA
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    103758147 141 - 225584828 CTTTCTTTGGCCTTCTGCACCTCCCTGATGAGCCAGGTGGGATAGAGAAGAAAGAAGATTAAACACAGAGGGACTGGACCCCAGGGAATCCTAGCTGGTTTTGGCAAGAGGCAAAAAGAGAGTAGTCCCCAGAAAGCAAAC
i rheMac8.chr1                    T 3230 C 0
s macFas5.chr1                    211903330 136 + 227556264 TTTTCTTCAGCCTTCCGCACCTCCCTGATG----AGGTGAGATAGAGATGCCAGAAGATTAAACACAGAGGGATTGGACCCCAGGGAGACCTAGCCGGTTTTGACAGGAGGCATTAGGAGAGTGG-TCACAGAAAGCAAAC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11411047 140 -  14060431 CTTTCTTCAGCCTTCTGCACCTCCCTGATGAGCAAGGTGGGATAGAGAAGAAAGAAGATTAAACACAGAGGGATTGGACCCCAGGGAATCCTAGCTGGTTTTGACAGGAGGCATTAAGAGAGAGG-CCCCAGAAAGCAAAC
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1021477 140 -   1280666 CTTTCTTCGGCCTTCTGCACCTTCCTGATGAGCCAGGTGGGACAGAGAAGAAAGAAGATTAAACACAGAGGGATTGGACCCCAGGGAATCCTAGCTGGTTTTGGCAAGAGGCAAAAGGAGAGTAG-TCCAAGAAAGCAAAC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s colAng1.NW_012114988v1            3745417 136 -   3775709 TTTTCTTCTGCCTTCCGCACCTCCCTGATG----AGGTGAGATAGAGATGCCAGAAGATTAAATACAGAGGGATTGGACCCCAGGGAGACCTAGCAGGTTTTGACAGGAGGCATTAAGACAGTGG-TCACAGAAAGGAAAC
i colAng1.NW_012114988v1          C 0 I 1
s cebCap1.NW_016108146v1             193917 139 +    407294 TTGACATCCACCTTCGGCACCTCCCCGATGAGCCTGAGGGTATCGAAATGACAAAAGATTAAACAAAGGGGGATTGGACCCCGGGAACCCCTGGCCGGTTTTCACAGGAGG-AATAAGAGAGGGC-CCTCAGAAGGCAAAT
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8643838 123 -   9938236 -CTCCCTCCACCTCCTGCAGCT-CCTGATGAGCCGGGGTGGGGAG-GATGACAAGAGATTACACCAAGAGGGATGAGACACCAGGGAG-----------TTTGGTAGGTGTCAT---GAGAGTGA-CCTCAGAAAGCAAAG
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=-895.000000
s hg38.chr1_KI270711v1_random         24819 1 +     42210 T
s panPan2.chr1                    208143283 1 - 229774977 A
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3813656 1 -   8455952 T
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    103758288 1 - 225584828 A
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211903466 1 + 227556264 A
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11411187 1 -  14060431 A
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1021617 1 -   1280666 A
i chlSab2.chr20_KE148050v1_random C 0 C 0
s cebCap1.NW_016108146v1             194056 1 +    407294 G
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8643961 1 -   9938236 G
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3745553 1 -   3775709 I
e manLeu1.NW_012105087v1             506989 0 -   1325925 C
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=549445.000000
s hg38.chr1_KI270711v1_random         24820 188 +     42210 GGAGGTTCCCTTTAAGGGGGAACAGGCAATCCTCTTCTCTCTGCAACAGAACATGGCTGCCATGGG-AGCCAGAGAGGAAGAGAGCAGCTGGTGTTCAGTGCACTGGACAGATAGGAGCTGAGGAGGATGAAGACTCAGCTATCCCTGTATGGTACAGACATGACACTTGGCACACATAGAGAAACACG
s panPan2.chr1                    208143284 188 - 229774977 GGAGGATCCCTTTAAGAGGGAACAGGCAATCCTCTTCTCTCTGCAACAGAGCATGGCAGCCATGGG-AGCCAGAGAGGAAGAGAGCAACTGGTGTTCATTGCACTGGACAGATAGGAGCCGAGGAGGATGAAGACTCAGCTATCCCTGTACGGTACAGACATGACACCCGCCACACACAGAGAAACACA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3813657 187 -   8455952 GGAGGTTCCCTTAAAGAGGGAACAGGCAATCCTCTTCTCTCTGCAACAGAGCATGGCTGCCATGGG-AGCCAGAGAGGAAGAGAGCAGCTGGTGTTCAGTGCACTGGACAGATAGGAGCTGAGGAGGATGAAGACTCAGCTATCCCTGTATGGTACAGACATGACAC-TGGCACACATAGAGAAACACG
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    103758289 186 - 225584828 GGAGGTTCCCTTTAAGAAGTGACAGGCAATCCTCTTCTCTCTGCAACAGAGCATGGCTGCCGTGGG-AGCCAGAGAGGAAGAAAGCAACTCATGTTCACTGCACTGGAAAGACAGGAGCTGAGGAGGATGAAGACTCAGCTCTCCCTGTACAGTACAGACATGACACTCGGCGCACACAGAGAG--ACA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211903467 188 + 227556264 GGAGGCTCCCTTTAAGAGGGAACAGGCAATCCTCTTCTCTCTGCAACACAGCATGGCAGCCACGGG-AGACAGAGAGGAAGAGACCAACCGGTGTTCATTTCACTGGAGAGATAGGAGCTGAGAAAGATGAAGACTCAGCTATCCCTGTTCGGTACAGATATGACACTCGCCACACACAGAGAAACACA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11411188 188 -  14060431 GGAGGTTCCCTTTAAGAAGTGACAGGCAATCCTCTTCTCTCTGCAACAGAGCATGGCTGCCATGGG-AGCCAGAGAGGAAGAAAGCAACTCATGTTCACTGCACTGGAAAGATAGGAGCTGAGGAGGATGAAGACTCAGCTCTCCCTGTACAGTACAGACATGACACTCGGCGCACACAGAGAACCACA
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1021618 184 -   1280666 ----GTTCCCTTTAAGAGGGAACAGGCAATCCTCTTCTCTCTGCAACAGAGCATGGCTGCCATGGG-AGCCAGAGAGGAAGAGAGCAACTGGTGTTCACTGCACTGGAAAGATAGAAGCTGAGGAGGATGAAGACTCAGCTGTCCCTGTACAGTACAGACATGACACTCGGCACACACAGAAAACCACA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s colAng1.NW_012114988v1            3745554 188 -   3775709 GGAGGTTCCCTTTAAGAGGGAACAGGCAATCCTCTTCTCTCTGCAACAGAGCATGGCTGCCATGGG-AGACAGAGAGGAAGAGAGCAACCGGTGTTCTTTTCACTGGATAGATAGGAGCTGAGAAAGATGAAGACTCAGCTATCCCTGTACAGTACAGAAATGACACTCACCACACACAGAGAAACACA
i colAng1.NW_012114988v1          I 1 C 0
s cebCap1.NW_016108146v1             194057 187 +    407294 GGAGGTTCCCTTTGAGAGGAAACAGGCAATCCTC--CTCTCTGCCACAGAGCATGGCTGCCATGGGAAACCGGAGGGAAAGAGAGCGGCTGGTATTCGTCACACTGGGCAGAAAGGAGCTGAGAAGAGCAGAGACTCAGTTATCCCTGCATAGTTCAGACACGGCACTCGGCACACACAAAGAACCGCG
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8643962 155 -   9938236 ---------------TGGGGAGGGGGGAAT------------------GTGTGTGGCTGTCATGGG-GACCAGAGAGGAAGGAAACAGTTGGTGCTCACTGCATGAGAAATACAGAAGTCCCTGGGGAAGGAGACTCAACCACACCTGCACAGCACAGTCTCAACGCGCAGCACACAGGGAGAACTGCA
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e manLeu1.NW_012105087v1             506989   0 -   1325925 C
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=451491.000000
s hg38.chr1_KI270711v1_random         25008 114 +     42210 ACAGCTGCCGCACCCTGTGTCTAAGCTGGGTTGAATTTCACATACTGTGGCCAAGCGAATGCGGGCTTTTGGCCCATCATAGATGCCAGAG--AGGGTGAGCCTCCTAGACATTTT
s panPan2.chr1                    208143472 114 - 229774977 ACAGCTGCCACATCCTGTGTCCAAGCTGGCTTGAGTTTCTCATACTGTGGCCAAGGGAATGCAGGCTTTCGGCCCATCATAGATGCCAGAG--AGGGTGTGCCTCCTAGACCTTTT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3813844 113 -   8455952 ACAGCTGCCGCACCCTGTGTCTAAGCTGGGTTGAATTTCACATACTGTGGCCAAGGG-ATGCGGGCTTTTGGCCCATCATAGATGCCAGAG--AGGGTGTGCCTCCTAGACATTTT
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    103758475 114 - 225584828 ACAGCTGCCACACCCTGTGTCTAAGCTGGGTTGAATTTCACATACTGTGGCCAAGGGAATGCAGGCTTTGGGCCCATCCTAGATGCCAGAG--AGGGTGCGCCTCCTAGACCCTTT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211903655 114 + 227556264 ACAGCTGCCACACCCTGTGTCTAAGTTGGGTTGAATTTCACATACTGTGGCCAAGGGAATGCAGGCTTTTGGCTCATCATAGATGCCAGAG--AGGGTGTGCCTCTTAGACCTTTT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11411376 114 -  14060431 ACAGCTGCCACACCCTGTGTCTAAGCTGGGTTGAATTTCACATACTGTGGCCAAGGGAATGCAGGCTTTGGGCCCATCCTAGATGCCAGAG--AGGGTGCGCCTCCTAGACCCTTT
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1021802 114 -   1280666 ACAGCTGCCACACCCTGTGCCTAAGCTGGGTTGAATTTCACATACTGTGGCCAAGGGAATGCAGGCTTTGGGCCCATCGTAGATGCCAGAG--AGGGTGCGCCTCCTAGACCCTTT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             506989 114 -   1325925 acagCTGCCACACCCTGTTTCTAAGCTGGGTTGAATTTCACACACTGTGGCCAAGGGAATGCAGGCTTGGGGCCCATCGTAGATGCCAGAG--AGGGTGCGCCTCCTAGACCCTTT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3745742 116 -   3775709 ACAGCTGCCACACCCTGAGTCTAAGTTGGTTTGAATTTCACATACTGTGGCCAAGGAAATGCAGGTTTGTGGCCCATTGTAGATGCCAGAGACAGGGTGTGCCTCCTACACCTTTT
i colAng1.NW_012114988v1          C 0 C 0
s cebCap1.NW_016108146v1             194244 113 +    407294 ACAGCTGCCACACCCTGTGTCTAAGTTGGGTTGAACTGAACGTATTGTGGCCAAGGGAATGGAGGCTTTGGGCCCATGGGAGATGCCAGAG--AGGGTGAGATTC-TAGAACTTTT
i cebCap1.NW_016108146v1          C 0 I 1
s otoGar3.GL873592                  8644117 114 -   9938236 GCAGGTGCTCCACCACGTGTCTGAGTTGGGTTGGGTTTCACATACTGTGGCCAAGAGGATACGGTCCCTAGAGTGATGGTACACTCCAGAG--ATGGTGTGGTTTCTATGtctttt
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=3575.000000
s hg38.chr1_KI270711v1_random         25122 1 +     42210 T
s panPan2.chr1                    208143586 1 - 229774977 T
i panPan2.chr1                    C 0 I 1
s gorGor5.CYUI01015145v1            3813957 1 -   8455952 C
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    103758589 1 - 225584828 T
i rheMac8.chr1                    C 0 I 1
s macFas5.chr1                    211903769 1 + 227556264 T
i macFas5.chr1                    C 0 I 1
s macNem1.NW_012017688v1           11411490 1 -  14060431 T
i macNem1.NW_012017688v1          C 0 I 1
s chlSab2.chr20_KE148050v1_random   1021916 1 -   1280666 T
i chlSab2.chr20_KE148050v1_random C 0 I 1
s manLeu1.NW_012105087v1             507103 1 -   1325925 T
i manLeu1.NW_012105087v1          C 0 I 1
s colAng1.NW_012114988v1            3745858 1 -   3775709 T
i colAng1.NW_012114988v1          C 0 I 1
s rhiRox1.KN297205v1                  32157 1 +    681187 T
i rhiRox1.KN297205v1              N 0 N 0
s cebCap1.NW_016108146v1             194358 1 +    407294 C
i cebCap1.NW_016108146v1          I 1 C 0
s otoGar3.GL873592                  8644231 1 -   9938236 t
i otoGar3.GL873592                C 0 I 1305
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panTro5.chr1                    208009935 0 - 228573443 C
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=1241093.000000
s hg38.chr1_KI270711v1_random         25123 352 +     42210 ATATGTTAC-CACCCATTACTTGCTCCCGAGTATTCAGTGTTACCTGGGGGCAGATGATTCCAGTACTTTCTCAGCCTCCTCAACTTGAACATCTTCATCCTCATCTTCGTCATTTTCTGTAAATACAAAA-TGTTCGTTCAGATATTTCCCACTTCCCATTCTGCAAGCACAGTCAGCCCAATGTGCACAGAGACATGAACATCTATGTGTGGTTCAGCATTGTACTGAAAACTGTCATGTTTTATCTTTCAC-AAAATGCTCTGGCATGGTTTCCTGGTCCATCGGGCAAT---------------------GCATTTCCGAT--------CTGGAGGGCCACCATCAAGATGTGGCCAAATATTGAAAAGACCTTTTGCTT
s panPan2.chr1                    208143588 352 - 229774977 ATATGTTAA-CACCCATTACTTGCTCCCGATTATTCAGTGTTACCTGGGGGCATATAATTCCTGTACTTTCTCAGCCTCCTCAACTTTAACATCTTCATCCTCATCTTCATCATTTTCTGTAAATACAGAAGTGTTCGTTCAGATATTTCCCACTTCACACTCTGCAAGCACAGTCAGCCCAATGTGCACACAGACATGAACATCTAGGCATGGT-CACTGTTCAACTGAAAGCTCTCATGTTTTATCGCTAAC-AAAATGCCCTGGCATGGTTTCCCGATCCATCAGGCAAT---------------------GCATTTCTGAT--------CTGGAGGGCCACCATCAAGATGTGGCCAAATACTGAAAAGAGCTTTTGCTC
i panPan2.chr1                    I 1 C 0
s gorGor5.CYUI01015145v1            3813958 350 -   8455952 ATATGTTAC-CACCCATTACTTGCTCCTGAGTATTCAGTGTTACCTGGGGG-AGATGATTTCTGCACTTTCTCAGCCTCCTCAACTT-AACATCTTCATCCTCATCTTCGTCATTTTCTATAAATACAAAA-TGTTCGTTCAGATATTTCCCACTTCACATTCTGCAAGCACAGTCAGCCCAATGTGCACAGAGACATGAACATCTACGTATGGTTCAGCATTGTACTGAAAACTCTCATGTTTTATCTTTCAC-AAAATGCCCTGGCATGGTTTCCTGATCCATCGGGCAAT---------------------GCATTTCTGAT--------CTGGAGGGCCACCATCAAGATGTGGCCAAATACTGAAAAGACCTTTTGCTT
i gorGor5.CYUI01015145v1          C 0 C 0
s rheMac8.chr1                    103758591 353 - 225584828 ATATGTTAC-CACCCACTACTTGCTCCTGAGTATTCAGTGTTACCTGGGGGCACATGAATCCTGTACTTTCTCAGCCTCCTCAACTTGAACATCTGCATCCTCACCTTGGCCATTTTCTGTAAATACAGAAGTGTTCGTTCAGGTATTTCCCACTTCACACTCTGCAAGCACAGTCAGCCCAATGAGCACAGAGACATGAACATCTAGGCGTGGGTCACCGTCCAACTGAAAGCTCTCATGTTTTATCTTTAAC-AAAATGCCCTGGCGTCGTTTCCTGATCCATCAGGCAAT---------------------GCATTTCTGAT--------CTGGAGGGCCACCATCAAGATGTGGCCAAATATTGAAAAGACCTTTTGGTC
i rheMac8.chr1                    I 1 C 0
s macFas5.chr1                    211903771 352 + 227556264 ATATGTCAA-AATCCATTACTTGCTCCTGATTATTCAGGGTTACCTGGGGGCACACGACTCCTGTACTTTCTCAGCCTCCTCAACTTTAACATCTTCATCGTTATCTTCATCATTTTCTGTAAATACAGAAGTGTTCATTCAGATATTTCCCACTTCACACTCTAGAAGCACAGTCAGCCCAATGTGCACAGAGACATGAACATCTAGGCATGGGTCACCATTCAACTGAAAGCCCTCAGGTTTTA-CTTTAAC-AAAATGCCCTGGCATGGTTTCTTGTTCCATCAGGCAAT---------------------GCATTTCTGCT--------CTGGAGGGCCACCATCAAGATGTGGCCAAATATTGAAAAGACCCTTTGTTG
i macFas5.chr1                    I 1 C 0
s macNem1.NW_012017688v1           11411492 353 -  14060431 ATATGTTAC-CACCCACTACTTGCTCCTGAGTATTCAGTGTTACCTGGGGGCACATGAATCCTGTACTTTCTCAGCCTCCTCAACTTGAACATCTGCATCCTCACCTTGGCCATTTTCTGTAAATACAGAAGTGTTCGTTCAGGTATTTCCCACTTCACACTCTGCAAGCACAGTCAGCCCAATGAGCACAGAGACATGAACATCTAGGTGTGGGTCACCGTTCAACTGAAAGCTCTCATGTTTTATCTTTAAC-AAAATGCCCTGGCGTTGTTTCCTGATCCATCAGGCAAT---------------------GCATTTCTGAT--------CTGGAGGGCCACCATCAAGATATGGCCAAATATTGAAAAGACCTTTTGGTC
i macNem1.NW_012017688v1          I 1 C 0
s chlSab2.chr20_KE148050v1_random   1021918 352 -   1280666 ATATGTTAC-CACCCATTACTTGCTCCTGAGTATTCAGTGTTACCTGGGGGCACATGAATCCTGTAATTTCTCAGCCTCCTCAACTTGAACATCTTCATCCTCACCTTTGTCATTTTCTGAAAATAGAGAAGTGTTAGTTCAGGTATTTCCCACTTCACACTCTGCAAGCACAGTCAGCCCAATGAGCACAGAGACATGAACATCTAGGCATGGGTCACCGTTCAGCTGAAAGCTCTCATGTTTTATTTTTAAC-AAAATGCCCTGGCGTCGTTTCCTGATCCATCAGGCAAT---------------------GCATTTCT-AT--------CTGGAGGGCCACCATCAAGATATGGCCAAATATTGAAAAGACCTTTTGCTC
i chlSab2.chr20_KE148050v1_random I 1 C 0
s manLeu1.NW_012105087v1             507105 353 -   1325925 ATATGTTAC-CACCCACTACTTGCTCCTGAGTATTCAGTGTCACCTGGGGGCACACGAATCCTGTACTTTCTCAGCCTCCTCAACTTGAACATCTGCATCCTCACCTTGGCCATTTTCTGTAAATACAGAAGTGTTCGTTCAGGTATTTCCCACTTCACACTCTGCAAGCACAGTCAGCCCAATGAGCACAGAGACATGAACATCTAGGCATGGGTCACCATTCAACTGAAAGCTCTCATGTTTTATCTTTAAC-AAAATGACCTGGCGTTGTTTCCTGATCCATCAGGCAAT---------------------GCATTTCTGAT--------CTGGAGGGCCACCATCAAGATATGGCCAAATCTTGAAAAGACCTTTTGCTC
i manLeu1.NW_012105087v1          I 1 C 0
s colAng1.NW_012114988v1            3745860 334 -   3775709 ATATGTTAA-AACCCATTACTTGCACCTGATTATTCAGTGTTACCT-GGGGCACATAATTCCT-TACTTACTCAGTGTCCTCAACGTTAACATCTTCATCCTCATCTTCAGCATTTTCTGTAAATACAGAAGTGTTCCTTCAGATATTTCCCACTTCACACTCTGCAGGCACAGTCACTCCAATGTGCACAGAGACACGGACA-------------------------------------GTTTTATCTTTAAG-AAAATGCCCTGCCATGGTTTACTGATCCATCAGGCAATTCTGATCTGGAGGGCCATCAGGCATTTCTGAT--------CTGGAGGGCCACCATCAAGATGTGGCC-AACATTGAAAAGACACTTTGCTC
i colAng1.NW_012114988v1          I 1 C 0
s cebCap1.NW_016108146v1             194359 352 +    407294 ATACTTTAC-CACCCACTACTTGCTCCTGATTATTCAGCGTTACCTGGGGGCACGTGACTCCTGTATTTGCTCAGACTCTGTAACATGAACATCTTCATCCTCCTCTTGGTCATTTTCTGCAAGTACAGATGTGTTCGTTCAGATATTTCCCGTTTCACACTCTGCAAGGACAGTCAACCCAATGTGCACAGGGACATGAACGTCTGCGTGTGGGTCCCTGTTCTACTGAAAGCTCTCATGGTTTCTCTTTAAC-AAAACGCCCTGGCATGGTTTCCTGATCCACCAGGCAAT---------------------GTGTTTCTGAT--------CCGGAGGCTCACCGTCAAGATGAGGCCAAATGTTCAAAAGACCTTCTGCT-
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8645537 336 -   9938236 ATGTCTTACACATCCATTACCAGCTTCTGATTCTTCACTGTTACCCGGGGGTAAGCAGGTGTTATGCTTGTTCAACCTCC---------------------TCACCCACATGATTTTCTGCAAATACACAAGTGTTCACTCTGCTATTTCCCACTTCACACACTACAAACTCAGTGACCTATATGTGCACTGAGATATAACTGTCTACATGTGAGTCAGTATCGTAATGAAACTCCTCCTGTTTTGTCTTTAATGAAAATGTCCTGG-ATGGTTTCCTAATGCATCCAACAAT---------------------GTGCCTTTGCTCACCACCCCGGCATGCTTATCTTCAAAAT--GGCCAAATA--AAAAACACCTTTTCCT-
i otoGar3.GL873592                I 1305 C 0
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panTro5.chr1                    208009935   0 - 228573443 C
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=46326.000000
s hg38.chr1_KI270711v1_random         25475 10 +     42210 CCCATATCAC
s panPan2.chr1                    208143940  9 - 229774977 CCCATATCA-
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3814308 10 -   8455952 CCCATATCAC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269695 10 +    297174 CCCATATCAC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103758944 10 - 225584828 CCCATATCAC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211904123 10 + 227556264 CCTATATCAC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11411845 10 -  14060431 CCCATATCAC
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1022270 10 -   1280666 CCCCTATCAC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             507458 10 -   1325925 CCCATATCAC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3746194 10 -   3775709 CCCATATCAC
i colAng1.NW_012114988v1          C 0 C 0
s cebCap1.NW_016108146v1             194711 10 +    407294 CCCACATCAC
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8645873 10 -   9938236 CCCATCTTAA
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e panTro5.chr1                    208009935  0 - 228573443 C
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I

a score=613200.000000
s hg38.chr1_KI270711v1_random         25485 113 +     42210 TGGAGG-CTTGTGCAGCCTCTCTCTGGACTTTGGCAGCTGTCGCCCCCATCCTGCCACAGATCTGATTCCCAGGAACAGGTTTGGTGTCCTGCCACAGTTCGCATTTCAAACCT
s panTro5.chr1                    208009935 113 - 228573443 TGGAGG-CTTCTACAGCCTCTCTATGAACTTTGGCAGCTGTCTCCCCCATCTGGCTACAGGTCTGATTCCCAGGCACAGGCTTGGTGTCCTGTCACAGTTCACATTTCAAACCT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208143949 113 - 229774977 TGGAGG-CTTCTACAGCCTCTCTATGAACTTTGGCAGCTGTCTCCCCCATCTGGCTACAGGTCTGATTCCCAGGCACAGGCTTGGTGTCCTGTCACAGTTCACATTTCAAACCT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3814318 113 -   8455952 TGGAGG-CTTGTGCAGCCTCTCTCTGGACTTTGGCAGCTGTCTCCCCCATCCTGCCACAGATCTGATTCCCAGGAACAGGCTTGGTGTCCTGTCACAGTTCGCATTTCAAACCT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269705 113 +    297174 TGGAGG-CTTGTGCACCCTCTCTCTGGACTTTGGCAACTGTCTCCCCCATCCCATCACAGATGTGATTCCCAGGCACAGGCTTGGTGTCCTGTCACAGTTTGCATTTTGAACCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103758954 113 - 225584828 TGGAGG-CTTGTGCAGCCTCTCTCCGGCCTTTGGCAGCTGTCTCCCCCATCCTGCCACAGATCTGATTCCCAGGCACGGGCTTGGTGTCCTGTCACAGTTTGCATTTCCAACCT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211904133 113 + 227556264 TGGGGA-CTTGCACAGCCTCTCTCAGGACTTTGGCAGCTGTCTCCATCATCCCACCAGAAATCTGATTCCCAGGCACAGGCTTGGTGTCCTGTCACAGTTTGCATTTCGAACCT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11411855 113 -  14060431 TGGAGG-CTTGTGCAGCCTCTCTCCAGCCTTTGGCAGCTGTCTCCCCCATCCTGCCACAGATCTGATTCCCAGGCACGGGCTTGGTGTCCTGTCACAGTTCGCATTTCCAACCT
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1022280 113 -   1280666 TGGAGG-CTTGTGCAGCCTCTCTCTGGCCTTTGGCAGCTGTTTCCCCCATCCCGCCACAGACCTGATTCCCAGGCACGGGCTTGGTGTCCTGTCACAGTTCGCATTTCCAACCT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             507468 113 -   1325925 TGGAGG-CTTGTGCAGCCTCTCTCTGGCCTTTGGCAGCTGTTTCCCCCATCCCGCCACAGATCTGATTCCCAGGCACGGGCTTGGTGTCCTGTCACAGTTTGCATTTCCAACCT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3746204 114 -   3775709 TGGGGGACTTTCCCAGCCTCTCTCTGGAGTTTGGCAGCTGTCTCCATCATCCCATCACAAATCTGATTCCCAGATACAGACTTGGTGTCCTGTCACAGTTCGCATTTCTAACCT
i colAng1.NW_012114988v1          C 0 C 0
s cebCap1.NW_016108146v1             194721 113 +    407294 CGGAGG-CCTATGCAGCCTCTTTCTGGACTTTGGCAGCTGACTCCCCCATCCTGACACAGATCTGATGCCCAGGGACAGGGTTGCCTTCCTGTCACAGTTCACATTTAAAACCT
i cebCap1.NW_016108146v1          C 0 I 404
s otoGar3.GL873592                  8645883 111 -   9938236 -TGGTG-TTTGTG-AACTTCTCTCTGGGTTTCTGCAGCTCTGTCTCTAGTTGTGCCACAGATCTGACCCCCAGGCATAGGCTTTATGTCCCCTAATAGCTGTCATTGAGAACCC
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I

a score=2270.000000
s hg38.chr1_KI270711v1_random         25598 2 +     42210 CA-
s panTro5.chr1                    208010048 2 - 228573443 AA-
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208144062 2 - 229774977 AA-
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3814431 2 -   8455952 CA-
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269818 2 +    297174 AA-
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103759067 2 - 225584828 AA-
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211904246 2 + 227556264 AA-
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11411968 2 -  14060431 AA-
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1022393 2 -   1280666 AA-
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             507581 2 -   1325925 AA-
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3746318 2 -   3775709 AA-
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8645994 2 -   9938236 -AC
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e cebCap1.NW_016108146v1             194834 404 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I

a score=2715925.000000
s hg38.chr1_KI270711v1_random         25600 482 +     42210 TTCTTTCTCTTAGGAGAGG----ACAAACTTGTCCCACAG-TCCTCTATGTGTCATGAGACTGCACAGGCCCTCC-ATGTGGCTTCTGCTGTGTTATTCAGGGACATTCTATCCATGGGGAGTGCTCCAGTCTGAAGCAC-TTCCTACCACCAAATGCCCCCACATCAAGTGCCTTCTCCAACACCAAACGGAGAGGGGCTGCATCTCATTTTGAAAAGCATTCGTAAGTGTTCCCATATTTGGATGCTTCAGACCCTTGCAAGAGAC-------------------------A--ATTTGTTTGCCTTTGCAGATGGAGAGAGAGAAACTCTGGAAAGAGAAATCACTCACTCACCGACAGTT-ACTAAGAACATTGCCAAAAAG-ACAGCCTGGGAACCTTCATTCTTAGCCCAGAGCTCTTTTCACTCCAACAAGCGCCCTCCCATCACAGCCTCCTTCCTGTCCTTTAAAACTAGACAGATGCTGCCTCTTGCTCCAAAGACCACCTTCCATCA
s panTro5.chr1                    208010050 482 - 228573443 TTCTTTCTCTTAGGAGAGG----ACAAACTTGCCCTACAG-TCCTCTATGCGTCAGGAGACTGCACAGGCCCTCC-ATGTGGTTTCTGCCCTGTTATTCAGGGACATTCTCTCCACGGGGAGTGCTCCAGTCTCAAGCAC-TTCCTACCACCAAATGCCCCCACATCAAGTGCCTTCTCCAACACCACACGGCGAGGGGCTTTATCTCATTTTGAAAAGCAGTCCTAAGTGTTCCCACATTTGGATGCTTCAGACCCTTGCAACAGAC-------------------------A--attttcctgcctttgcagatggagacagagaaactcaggaaggataaatcactcactcaccgacagtt-actaagaacattgccaaagag-acaacctgggaacctgccttctgagtccagagctcttttcactCTAACAAGCGCCCACCCGTCACAGCCTCCTTCCTCTCCTTCAAAACTAGAAACGTGCTGCTTCTTGCTCCAAAGACCACCTTCCATCA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208144064 482 - 229774977 TTCTTTCTCTTAGGAGAGG----ACAAACTTGCCCTACAG-TCCTCTATGCATCAGGAGACTGCACAGGCCCTCC-ATGTGGTTTCTGCCCTGTTATTCAGGGACATTCTCTCCACGGGGAGTGCTCCAGTCTCAAGCAC-TTCCTACCACCAAATGCCCCCACATCAAGTGCCTTCTCCAACACCACACGGCGAGGGGCTTTATCTCATTTTGAAAAGCAGTCCTAAGTGTTCCCACATTTGGATGCTTCAGACCCTTGCAACAGAC-------------------------A--attttcctgcctttgcagatggagacagagaaactcaggaaggataaatcactcactcaccgacagtt-actaagaacattgccaaagag-acagcctgggaacctgccttctgagtccagagctcttttcactCTAACAAGCGCCCACCCGTCACAGCCTCCTTCCTCTCCTTCAAAACTAGAAACGTGCTGCTTCTTGCTCCAAAGACCACCTTCCATCA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3814433 478 -   8455952 TTCTTTCTCTTAGGAGAGG----ACAAACTTGTCCCACAG-TCCTCTATGCGTCATGAGACTGCACAGGCCCTCC-ATGTGGCTTCTGCTGTGTTATTCAGGGACATTCTATCCATGGGGAGTGCTCCAGTCTGAAGCAC-TTCCTACCACCAAATGCCCCCACATCAAGTGCCTTCTCCAACACCACATGGAGAGGGGCTTCATCTCATTTTGAAAAGCATTCGTAAGTGTTCCCATATTTGGATGCTTCAGACCCTTGCAAGAGAC-------------------------A--ATTTGTCTGCCtttgcagatggagagagagaaactctggaaagataaatcactcactcaccgaca-tt-actaagaacattgccaaa-ag-acagcctgggaaccttcattct-agtccagagctcttttcactC-AACAAGCGCCCTCCCATCACAGCCTCCTTCCTGTCCTTTAAAACTAGATAGATGCTGCCTCTTGCTCCAAAGACCACCTTCCATCA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269820 471 +    297174 TTCTTTCTCTTAGGAGAGG----ACAAACTTGTCCCACAG-TGCTCTATGCATCAGGATACTTCGCAGGCCCTCC-ATGTGGCTTCTGCTGTGT--------GACATTCTCTCCATGGGGAGTGCTCCAGTCTGAAGCAC-TTCCTACCATCAAAAGCCCCCACATCAAGTGCCTTCTGCAACATGACAAGGCGAGGAGCTTCATCTCATTTTGAAAAGCAGTAGTAAGTGTTCCCACATTTGGATGCTTCAGTCCCTTGCAAGAGAC-------------------------A--ATCTGTCTGCCtttgcaaatggagagagagaaacttgggaaggataaatcactcactcaccaacagtt-aataagaacattgctgaagag-acagcatgggaaccttcattcttagtccagagctcttttcactctaaca---gccctcctgTCACAGCCTCCTTCCTGTCCTTTAAAACTAGATAGATGCTGCCTCTTGCTCCAAAGATGACCTTCCATCA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103759069 482 - 225584828 TTCTTTCTTTTAGGAGAAG----ACAAACTTGTCCCACAG-TCCTCTATACATCAGGAGACTGCACAGGCCCTCC-ACGTGGCTTCTGCTGTGTTATTCAGGGACATTCTCTCCATGGGGAGTGCTCCAGTCTGAAGCCC-TTCCTACCACCAAATGCCCCCACATCAAGTGCCTTCTCCAACACCACATGGCGAGGGGCTTCATCTCATTCTGAAAAACAGTTGTAAGTGTTCCCACATTTGGATGCTTCAGACCCTTGCAAGAGAC-------------------------A--ATTTGGCTGCCtttgcagatggaaagagagaaactcaggaaggataaatcactccctcactgacagtt-actaagaacattgccaaagag-acagcctgggaaccttcattcttagtccagagctcttttcactCTAACAAGTGTCCTCCCGTCACAGCCTCCTTCCTGTCCTTTAAAACTAGACAGATGCTGCCTCTTGTTCCAAAGACCACCTTCCATCA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211904248 482 + 227556264 TTCTTTCTCTTAGGAGAGG----ACAAACTGGCCCCACAG-TCCTCTATGTATCAGGAGACTTCACAGGCCCTCC-ATGTGGCTTCTCCTGTGTTATTCAGGGACATGCTCTCCATGGGGAGTGCTCCAGTCTGAAGCAC-CTCCTACCACCAAATGCCCCCACATCAAGTGCCTTCCCCAACACCACACGGCGAAGGGCTTTATCTCATTTTCAAAAGCAGTCATAAGTGTTCCCACATTTGGATGCTTCAGAACCTTGCAAGAGAC-------------------------A--ATGTGCCTGCCTTTGCAGATGGAGAGAGAGAATCTCACGAGGGAAAAATCACTCACTCACCGACACTT-ACTAAGAACATTGCCAAAGAG-ACAGCCTGGGAACCTTCATTCTTAGTCCAGAGCTCTTTTCACTCTAACAAGCACCCTCCTGTCACAGCCTCCTTCCTCTCCTTTACAACTAGAGAGATGTTGCCTCTGGCTCCAAAGACCATCTTCCATCA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11411970 476 -  14060431 TTCTTTCTTTTAGGAGAGG----ACAAACTTGTCCCACAG-TCCTCTATACATCAGGAGACTGCACAGGCCCTCC-ACGTGGCTTCTGCTGTGTTATTCAGGGACATTCTCTCCGTGGGGAGTGCTCCAGTCTGAAGCCC-TTCCTATCACCAAATGCCCCCACATCAAGTGCCTTCTCCAACACCACACGGCGAGGGGCTTCATCTCATTCTGAAAAACAGTTGTAAGTGTTCCCACATTTGGATGCTTCAGACCCTTGCAAGAGAC-------------------------A--ATTTGGCTGCCtttgcagatggagagagagaaactcaggaaggataaatcactccctcactgacagtt-actaagaacattgccaaagag-acagcctgggaaccttcattcttagtccagagttcttttcactataacaAGCGTCCTCCTGTCACAGCCTCCTTCCTGTCCTTTAAAACTAGAGAGATG------CTTGCTCCAAAGACCACCTTCCATCA
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1022395 482 -   1280666 TTCTTTCTCTTAGGAGAGG----ACAAACTTGTCCCACAG-TCCTCTATACATCAGGAGACTGCACAGGTCCTCC-ACGTGGCTTCTGCTGTGTTATTCAGGGACATTCTCTCCATGGGGAGTGCTCCAGTCTAAAGCCC-TTCCTACCACCAAATGCCCCCACATCAAGTGCCTTCTCCAACACCACACGGCGAGGGGCTTCATCTCATTTTGAAAAACAGTTGTAAGTATTCCCACATTTGGATGCTTCAGACCCTTGCAAGAGAC-------------------------A--ATTTGGCTGCCtttgcagatggagagagagaaactcaggaaggataaatcactccctcaccgacagtt-actaagaacattgccgaagag-acagcctgggaaccttcattcttagtccagagctcttttcactCTAACAAGCGTCCGCCTGTCACAGCCTCCTTCCTGTCCTTTAAAACTAGACAGATGTTGCCTCTTGTTCCAAAGACCACCTTCCATCA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             507583 482 -   1325925 TTCTTTCTCTTAGGAGAGG----ACAAACTTGTCCCACAG-TCCTCTATACATCAGGAGACTGCACAGGCCCTCC-ACGTGGCTTCTGCTGTGTTATTCAGGGACATTCTCTCCGTGGGGAGTGCTCCAGTCTGAAGCCC-TTCCTACCACCAAATGCCCCCACATCAAGTGCCTTCTCCAACACCACATGGCGAGGGGCTTCATCTCATTTTGAAAAACAGTCGTAAGTGTTCCCACATTTGGATGCTTCGGACCCTTGCAAGAGAC-------------------------A--ATTTGCCTGCCtttgcagatggagagagagaaactcaggaaggataaatcactccctcaccgacagtt-actaagaacattgccaaagag-acagcctgggaaccttcatttttagtccagagctcttttcactCTAACAAGCGTCCTCCCGTCACAGCCTCCTTCCTGTCCTTTAAAACTAGACAGACGCTGCCTCTTGTTCCAAAGACCACCTTCCATCA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3746320 482 -   3775709 TTCTTTCTCTTAGGATATG----TCAAACTTGCCCCACAG-TCGTCTATGCATCAGGAGACTTCACAGGCCCTCT-ATGTGGCCTCTGCTGTGTTATTCAGGGACATGCTTTCCATGGGGAATGCTCCAGTCTGAAGCAC-TTCCTACCACCGAATGCCCCCACATCAAGTGCCTTCTCCAACACCACATGCCGAGGGGCTTTATCTCATTTTCAAAAGCAGTCGTAAGTGTTCCCACATTTGGATGCTTCAGAACCTTGCAAAAGAC-------------------------A--ATGTGCCTGCCTCTGTAGATGGAGAGAGAGAATCTCACGAGGGAAAAATCACTCAATCACCGACAGTT-ACTAAGAACATTGTCAAAGAC-ACAGCCTGGGAACCTTCATTCTTAGTCCAGAACTCTTTTCACTCTAACAGGCACCCTCCTGTCACAGCCTCCTTCCTCTCCTTTACAACTAGAGAGATGTTGCCTCTGGCTCCAAATACCATCTTCCATCA
i colAng1.NW_012114988v1          C 0 C 0
s cebCap1.NW_016108146v1             195238 511 +    407294 TTCTTTCTCTTAGGAGAGGACAAACAAACTTGTCCCACAA-TCCTCTGCACATCAGGTGACGTCACAGGCCGTCC-AAGTGGCTTCTGCTGTGTTATTCAGGGACATTCTCTCCACAGGGAGTGCTCCAGTCTGAACCGC-TTCCTAACACCAAATGCCCACACATCAAGTGCTGTCTCCAACACCGCACAGCGAGGGGCTTTATCTCGTTTTGATAAGCGGTCATAAGTGTTCGCACATTTGAATGTTTCAGACAC-TGCAAGATACCGGCCTTGGCAGATGGAGAGAGAGAA--ATTTGcctgactttgcagatggagagacagaaagtcaggaaggagaaatcaattgctcgctgacagttaactaaaaacactgctgaagat-acagcctgggaaccttcattcttaatccagagctctttccactccaacaaccgccctcctGTCACAGCTTCCTTTTTGTCCTTTACAACTGGACAGATGCTGCCTCTTGTTCCAAAGAACACATCCCATCA
i cebCap1.NW_016108146v1          I 404 I 78538
s otoGar3.GL873592                  8645996 482 -   9938236 TTCTTTCTCTAAGCAGCAG----ACAATCCTGTCCCACAGCCCCCCCATACATTAGGGAACTTTATGGGCACTCCAACTTGACTTCTGCTATGTTATCGAGGGAAATTCTCTCCATGGAAAGGGTTCCAGTATAAACCACATTTCTACCACCAAGCACCACTATTTCAAGTATCTT----AACACCACAGAGCAAGGAGCAGTATA-CTCTTTGAAATACATTTATCAATATTCCTACATTTGAATGGTACATCTAC-TGTTAAAGAC-------------------------AGTATTTGATCCTTTTTCCTGACAGGACGATAGAAATTCAGTAAGGGTGAATTAATCACTCTTCCCCAGTT-ACTAAAGACAGTGCTTTAGGGTAGAGCCTGAGAAATTCCATTCTGAGCCCAGGGCTCTCTTCACTCTAATAGGCTGCCTCCTGTCACATCCTCCTTCCTGTACTTTAAAACTGGGTAGATCCTGCCTCCTGCTCCAACAACCATGCTCCATCA
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I

a score=1887814.000000
s hg38.chr1_KI270711v1_random         26082 392 +     42210 -AGGAAGGAGGGACACTTGCAATACTGTGACCTCCAAACCCAT--------GGGTTT-CCCATCTCTGTTCTTACCCAGGAAGTCCTGGTCATGTCATGGCCACATATGTGTAGCAGAAAATAACCCCACTGATACAACTGTCATTGTGAAAGTATGGAGGTCTGGAGCCTCTCATAAGACT-GGGGTTTTGGGTCATCA-GGGCCTATGGCCACCTTACCTGGGCTGAGCTTTTGGACAAGGTGCTGTGCCAGTCTACACCCCTCAGCCAGCTGTTCTTGGAGGTCCTGCCCCTGGGACTTGTCTGGCTCATCTGGAGTGAGGAGGGCCTGGAGATGCTGATTCAATGAGCGGGAGGCATCTCTCCCTTCCCGTAACTTCTCCCTTAACTGGGTCAGCTCCCG
s panTro5.chr1                    208010532 392 - 228573443 -AGGGAGGAGAGACATTTGCAATACTGTGACCTCCAACCCAAT--------CGGTTT-CCCACCTCTGCTCTTACCCAGGAAGTCCTGGTAATGTCACGGCCACATATGTTTAGTGGGAAAAAACACCACCGATACAAATGTCATTGTGAAAGTATGGAGGTCTGGAGTCTCTCACAAGCCT-GGGATTTTGGGTCATCA-GGGCCTATGGCCACCTTACCTGGGCTGAGCTTTTGGATGAGGTGCTGTGCCAGCCTACATCCCTCAGCCAGCTGTTCTCGAAGGTCCCGTCCCTGGGAGTTGTCCGGCTCATCCGGAGTGAGGAGGGCCTGGAGATGCTGATTCAATGAGCGGGAGGCATCTCTCCCTTCCCGTAACTTCTCCCTTAACTGGGTCAGCTCTCG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208144546 392 - 229774977 -AGGGAGGAGAGACATTTGCAATACTGTGACCTCCAACCCAAT--------CGGTTT-CCCACCTCTGCTCTTACCCAGGAAGTCCTGGTAATGTCACGGCCACATATGTTTAGTGGGAAAAAACACCACCGATACAAATGTCATTGTGAAAGTATGGAGGTCTGGAGTCTCTCACAAGCCT-GGGATTTTGGGTCATCA-GGGCTTATGGCCACCTTACCTGGGCTGAGCTTTTGGACGAGGTGCTGTGCCAGCATACATCCCTCAGCCAGCTGTTCTCGAAGGTCCCGTCCCTGGGAGTTGTCCGGCTCATCCGGAGTGAGGAGGGCCTGGAGATGCTGATTCAATGAGCGGGAGGCATCTCTCCCTTCCGATAACTTCTCCCTTAACTGGGTCAGCTCTCG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3814911 388 -   8455952 -AGGAAGGAGGGACACTTGCAATACTGTGACCTCCAACCC-AT--------GGGTTT-CCCATCTCCGTTCTTACCCAGGAAGTCCTGGTCATGTCATGGCCACATATGT-TAGTGGAAAAAAAC-CCACTGATACAACTGTCATTGTGAAAGTATGGAGGTCTGGAGTCTCTCATAAGCCT-GGGGTTTTGGGTCATCA-GGGCCTATGGCCACCTTACCTGGGCTGAGCTTTTGGACAAGTTGCTGTGCCAGTCTACACCCCTCAGCCAGCTGTTCTTGGAGGTCCTGCCCCTGGGACTTGTCCGGCTCATCCGGAGTGAGGAGGGCCTGGAGATGCTGATTCAATGAGCGGGAGGCATCTCTCCCTTCCCGTAACTTCT-CCTTAACTGGGTCAGCTCTCG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    270291 390 +    297174 -AGGAAGGAGGGACACTTGCAATACTGTGACCTCCAACCCCAT--------GGGTTT-CCCATCTCTGTTCTTACCCAGGAAGTCCTGGTCATGTCATGGCCACATATGTTTAGTGGAAAAAAACATCACCGATACAACTGTCAT--TGAAAGTAAGGAGGTCTGGAGTCTCTCATAAGCCT-GGGGTTTTGGGTCATCA-GGGCCTATAGCCACCTTACCTGAGCTGAGCTTTTGGACAAAGTGCTGTGCCAGCCTACACCCCTCAGCAGGCTGTTCTTGGAGGTCCTGCCCCTGGGAGTTATCCGGCTCATCCAGAGTGAGGAGGGCCTGGAGATGCTGACTCAATAAGCAGGAGGCGTCTCTCCTTTCCTGTAACTTCTCCCGTAACTGGGTCAGCTCTCA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103759551 390 - 225584828 -AGGAAGGAGGGTCATTTGCAATACTGTGACCTCCAACCTCAT--------GGGTTT-CCCATCTCTGTTCTTACCCAGGAAGTCCTGGTCATGTCATGGCCAC--ATGTTTAGTGGAAAAAAGCCCCACCGATACAACCGTCATTGTGAAAGTGTGGAGGTCTGGAGTCTCTCATAAGCCT-GGGGTTTGGGGTCATCA-GGGCCTGTGGCCATCTTACCTGAGCTGAGCTTGTGGACAAGGTGCTGTGCCAGCCTACACCCCTCAGCCAGCTGTTCTTGGAGGTCCCGCCACTGGGACTTGTCCAGCTCATCCGGAGTGAGGAGGGCCTGGAGATGCTGAGTCAATGAGCAGGAGGCATCTCTCCCTTCCCGTAACTTCTCCCTTAACTGGATCAGCTCTTG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211904730 400 + 227556264 -AGGAAGGAGGGACATTCCCAATACTGTGACCTCCAACCCCATGGGTTGCAGGGTTT-CCCATCTCTGATCTCACCCAGGAAGTCCTGGTCATGTCATGGCCACATATGTTTAGTGGAAAAAAACACCACCGATACAACTGTCATTGTGAAAGTACGAAGGTCTGGAGTCTCTCATAAGCCT-GGGGTTCTGGGTCATCA-GATCCTATGGAAACCTTACCTGGGGTGAGCTTTTGGACGAGGTGCTGTGCCAGCCTACAGCCCTCGGCCAGCTGTTCTCGGAGGTCCCTCCCCTGGGAGTTGGCCGGCTCATCCAGAGTGAGGAGGGCCTGGAGATGCTGATTCAATGCGCGGGAGGCATCTCTCCCTTTCCGCAACTTCTCCCTTAACTGGCTCAGCTCTCG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11412446 390 -  14060431 -AGGAAGGAGGGACATTTGCAATACTGTGACCTCCAACCCCAT--------GGGTTT-CCCATCTCTGTTCTTACCCAGGAAGTCCTGGTCATGTCATGGCCACATATGTTTAGTG--AAAAAACCCCACTGATACAACTGTCATTGTGGAAGTGTGGAGGTCTGGAGTCTCTCATAAGCCT-GGGGTTTTGGGTCATGA-GGGCCAATGGCCACCTTACCTGGGCTGAGCTTTTGGACAAGGTGCTGTGCCAGCCTACACTCCTCAGCCAGCTGTTCTCGGAGGTCCTGCCGCTGGGACTTGTCCGGCTCATCCGGAGTGAGGAGGGCCTGGAGATGCTGAGTCAATGAGCGGGAGGCATCTCTCCCTTCCCGTAACTTCTCCCTTAACTGGGTCAGCTCTCG
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1022877 393 -   1280666 -AGGAAGGAGGGACATTTGCAATACTGTGACCTCCAACCTCAT--------GGGTTTCCCCATCTCCGTTCTTACCCAGGAAGTCCTGGTCATGTCATGGCCACACATGTTTAGTGGAAAAAA-CCCCACCGATACAACTGTCATTGTGAAAGTGTGGAGGTCTGGAGTATTTCATAAGCCTGGGGGTTTGGGGTCATCA-GGGCCTGTGGCCACCTTACCTGAGCTGAGCTTGTGGACAAGGTGCTGTGCCAGCCTACACCCCTTGGCCAGCTGTTCTCGGAGGTCCTGCCGCTGGGACTTGTCCGGCTCATCCAGAGTGAGGAGGGCCTGGAGATGCTGAGTCAATGAGCAGGAGGTATCTCTCCCTTCCCGTAACTTCTCCCTTAACTGGATCAGCTTTCG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             508065 390 -   1325925 -AGGAAGGAGGGTCATTTGCAATACTGTGACCTCCAACCTCAT--------GGGTTT-CCCATCTCCGTTCTTACCCAGGAAGTCCTGGTCATGTCATGGC--CACATGTTTAGTGGAAAAAAGCCCCACCGATACAACTGTCATTGTGAAAGTGTGGAGGTCTGGAGTCTCTCATAAGCCT-AGGGTTTGGGGTCATCA-GGGCCTGTGGCCATCTTACCTGAGCTGAGCTTGTGGACGAGGTGCTGTGCCAGCCTACACCCCTCAGCCAGCTGTTCTTGGAGGTCCCGCCACTGGGACTTGTCCGGCTCATCCGGAGTGAGGAGGGCCTGGAGATGCTGAGTCAATGAGCAGGAGGCATCTCTCCCTTCCCGTAACTTCTCCCTTAACTGGATCAGCTCTCA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3746802 401 -   3775709 -AGGAAAGAGGGACATTCGCAATACTGTGACCTCCAACCCCATGGCTTGCAGGGTTT-CCCATCTCTGAACTCACCCAGGAAGTCCTGGTCATGTCATGGCCACATATATTTAGTGGAAAAAAACACCACCGATACAACTGTCATTGTGAAAGTACGGCGGTCTGGAATCTCTCATAAGTCG-GGGGTTTTGGGTCATCATGGTCCTGTGGAAACTTTACCTGGGGTGAGCTTTTGGACGAGGTGCTGTGCCAGCCTACAGCCCTCGGCCAGCTGTTCTCGGAGGTCCCGCCCCTGAGAGTTGAGCGGCTCATCCGGAGTGAGGAGGGCCTGGAGATGCTGATTCTATGCGCGGGAGGCACCTCTCCCTTCCCGCAACTTCTCCCTTAACAGGCTCAGCTCTCG
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8646478 382 -   9938236 TAGAAGAAGGATATATCTGAAATACCATGACCACCAACCCCAT--------TGGTTT-CGCATCTCAGTTCCTATCCATCCATTTCTGGTCAGGTCACAACCACA-ATATTTAGTGGAAAGAAAAGTCACTGGC-TTACTGTCATTGAG-AGGTATGGCACTCTGGAGTCTCTCATAAGCCT-GGGACATTGCGTAATCG-GGGTCTGTGACCACCTTACCTGGGCTGAGTGTGCAGA-GAGGTGCTCTGCCAGCCTGTGCCCCTCAATCAGTTGCTCTCGGAGGCTCTGCGCCTGGCAGCTG------TCATTGTAGCTGAGGAAAGCCCCAACATGTTG-TTGAGTAAGGAGGAGACATCTCTTTCCTCCCATAACTGCTCTTTTAACAGGGTCACCTTCTG
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I

a score=817666.000000
s hg38.chr1_KI270711v1_random         26474 179 +     42210 TTCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGATGG-----TAGAGAAAATTTAAGAGTGGAAAGGGTTGAGTGATCCGCTCAAA-TATT--GCAACAGAGATTTCTGAGACAATGTCCTCAAGGAGACCTCCAAGCAGAAGGTCAGCACATGTTGAAAGGAATGACTGTGGCCAAGA
s panTro5.chr1                    208010924 181 - 228573443 TTCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGATAG-----TAGAGAAAATTTAACAGTGGAAAGGGATGAGTGATCGGTTCTAG-TATTTTGCAACACAGATTTCTGAGACAATGTCCTCAAGGAGACCTCCAAGCAGAAGGTCAGCACGTGTTTAAAGAAATGTCTGTGCCCAAGA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208144938 179 - 229774977 TTCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGATAG-----TAGAGAAAATTTAACAGTGGAAAGGGATGAGTGATCAGTTCTAA-TATTTTGCAAC--AGATTTCTGAGACAATGTCCTCAAGGAGACCTCCAAGCAGAAGGTCAGCACGTGTTTAAAGAAATGTCTGTGCCCAAGA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3815299 176 -   8455952 TTCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGACGG-----TAGAGAAAATTTAAGAGT-GAAAGGGTTGAGTGATCCGTTCAAA-TATT--GCAACAGAGATTTCTGAGACAATGTCCTCAAGGAGACCT-CAAGCAGAAGGTCAGCACATGTTGAAAGGAATGTCTGTG-CCAAGA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    270681 179 +    297174 TTCCTGAGAGTGGACTGGGACTTTATATCACCTACGGTTAGATAG-----TAGAGAAAATTTAACGGTGGAAATGGATGAGTGATCAGTTCTAA-TATT--ATGACAGAGATTTCTGAGACAATGTCCTCAAGGAGACCTCCAAGCAGAAGGTCAGCACATGTTTAAAGAAATGTCTGTGGCCAAGG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103759941 146 - 225584828 TGCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGAGGG-----TAGAGAACATTTAACAGTGGAAAGGGATGAGC------------------------------------GACAATGTCCTCAAGGAGACCTCCAAGCAGAAGGTCAGCACATGTTTAAAGGAATGTCTGTGGCCAAGA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211905130 176 + 227556264 TTCCTGAGACTGAACCAGGACTTTATATTGCCTAAGGTGACATAG-----TAGAGAAAATTGAACAGTGGAAAGGGGTGAGTGATCAGTTCAAA-TATT--GCGACAGAGATTTCTGAGACAATGTCCTCAAGGAGACCTCCAAGGAGAAGGTCAGCACATATTTCA---AATGTCTGTGGCCAAGA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11412836 179 -  14060431 TGCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGAGGG-----TAGAGAACATTTAACAGTGGAAAGGGATGAGCGATCAGTTCTAA-TATT--GCAACAGAGATTTCTGAGACAATGTCCTCGAGGAGACCTCTAAGCAGAAGGTCAGCACATGTTTAAAGGAATGTCTGTGGCCAAGA
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1023270 146 -   1280666 TGCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGATGG-----TAGAGAACATTTAACAGTGGAAAGGGATGAGC------------------------------------GACAATGTCCTCAAGGAGACCTCCAAGCAGAAGGTCAGCACATGTTTAAAGGAATGTCTGTGGCCAAGA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             508455 146 -   1325925 TGCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGATGG-----TAGAGAACATTTAACAGTGGAAAGGGATGAGC------------------------------------GACAATGTCCTCAAGGAGAACTCCAAGCAGAAGGTCAGCACATGTTTAAAGGAATGCCCGTGGCCAAGA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3747203 179 -   3775709 TTCCTGAGAGTGAACTAGGACTTTATATTGCCTAAGTTGAGATAA-----TAGAGAAAATTTAACAGTGGAAAAGGGTGAGGGATGAGTTCAAA-TATT--GCTACAGAGATTTCTGAGACAATGTCCTCAAGGAGACCTCCAAGGAGAAGGTCAGCACATGTTTAAAAAAATGTCTGTGGTCAAGA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3657582 184 +  47448759 TCCCTGAGAGTGAACCAGGGCTTTATACTGCCTATGGTGAGATAGCACGCTAGTATACGTTTAATAACAGAAAGTGATGAGTCATCAGTTCGAA-TACT--GCAATGGAGGTTTAGGTGAGGATGTTCTCAAGGAGCCCTCCAAGCAGAAGGTCACAACATGTTTGGGGAAATGCCTGTGGCCAAGa
i calJac3.chr18                   I 18208 I 374
s otoGar3.GL873592                  8646860 179 -   9938236 CTCCTGAATGTGAATTATGACACTGTATTTCCTAAGATAAGAGAG-----TAGAGAAAACTTGTGAG-AGAGAGGGATGAGTGATGAGTTCTAAGCATT--GCAGCAGAGATTTCTGTGCACGTATTGTTAAGGACCCCTTCAAGCATAATTTCATCACATGCTTGGTGAAATGCTAGTGGTAAAAC
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197954196 9306 - 215897965 I
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I

a score=88206.000000
s hg38.chr1_KI270711v1_random         26653 22 +     42210 GAAAGAATAGAAAATGGTTTAC
s panTro5.chr1                    208011105 22 - 228573443 GAAAGAATAAAAAATGGTTCAC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208145117 22 - 229774977 GAAAGAATAAAAAATGGTTCAC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3815475 22 -   8455952 GAAAGAATAGAAAATGGTTTAC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    270860 22 +    297174 GAAAGAATCAAAAATGGTTTAC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103760087 22 - 225584828 GAAAGAATAGAAAATGGTTTAC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211905306 22 + 227556264 GAAAGAACAAAAAATGGTTTAC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11413015 22 -  14060431 GAAAGAATAGAAAATGGTTTAC
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1023416 22 -   1280666 GAAAGAATAGAAAATGGTTTAC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             508601 22 -   1325925 GAAAGGATAGAAAATGGTTTAC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3747382 22 -   3775709 GAAAGAAGAAAATACAGTTTAC
i colAng1.NW_012114988v1          C 0 C 0
s otoGar3.GL873592                  8647039  3 -   9938236 GAA-------------------
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3657766 374 +  47448759 I
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I

a score=4741736.000000
s hg38.chr1_KI270711v1_random         26675 947 +     42210 AGGCTTCCTCTGTATCAGAGAGGGCTCCTGCAAGATCCTTGATGATGTTCCATTCATCTTTCCCTTCTGTAAACAAAAGTAGGTGTCTTCCTAATTCCGTTTCAAAAAGA----CATCC----TTTCAGTTCCTCACTCTGGCCATGGACATTTCCATGTGAAAATACACATAGTGCATCTTGCGGCCACTAGATACAAAGCCATGTACAGAAATGAGGCCAGGTGCAGATGGGGCGAATTGAAA---------------AGACGAAAGAAGAAAAGAATGACAGGGTCGAGAAGGCAACATTGATTGAGTGAAAGAATGAGAAGACGCAGTCAGTCA----GAAGGTGATTCTCACTAAGGGTAAGTggggtggtgatggcacaccattttgagtatactgaatgc--tgctgggtggttcccactcctttggtgaattttctgtcatgcaaatttcacatcaaCAATTACTTGTTTG-AAAAAGAGAAAACAAGGCTC---------------TAAGAAACAACTGC------------------AACACATAACTTATTATTATCCTTGTTCT--CTG----ATAAATATTTGTGTGTCATGAGCCTGCCATGGCAATTTCTGCCCTTCCCCTGGCCCAGCTTCGTTGTTACTTCTCCCCGCCGAGCTGCTGTACTTCAGAGATCTACACACCTACCCGCCTGCCTCCCCCCACGGGGTCCCCTCACCTGAGCTCCTCAGCTTGCTTGAGCTGCTCTGCAAGCTTCTCCTCCTTGAA--CTG-TCG----CTCATTCCTCAGCATAAATTTTATGAGGTCTTTACACTCTTCATACTCTGAGAAAAGACAGACACGTCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCACTGCCTACAGGGCAGGAGCCAG-GTCCATCCCAAGGACAAAACTGTCCCCAGTACCAGGCTCTAGGCAGGGATTTCCACATCTTTA-CTCTTCAGTCTCCTGACTTTCTGGCATC--TTATCCTCCAAAA---
s panTro5.chr1                    208011127 948 - 228573443 AGGCTTCCTCTGTATGAGAGAGGGCTCCTGGAAGACCCTCCACGATGTTCCATTCATCTTTCTCTTCTCTCAACAAAAGTAGGTgtcttcctcattcagtttcaaaaaga----catccatcctttcagttcctcaCTCTGGCCATGGACATTTCCACGTGCATATACACATAGTGCATCTTGCAGCGACTAGATACAAAGCCATGGACAGAAATGAGGCCAGGTGCAGATGGGGCCAATTGAAA---------------AGATGAAAGAA---AAGAATGACAGGCTCGAGAAGGTAACATTGA----GTGAAAGCATGAGAAGCCGCAGTCAGTCA----GGAGCTGATTCTGACTAAGGGTGAGTggggtggtgatggcacatcattttgagtatgccgaatgc--tgctcggtggttcccactccttcggttaattttgtgttatgcgcatttcacctcaaCAATTACTTGTTTG-AAAAACAGAAAATAAGGCTC---------------TGAGAAACAACTGC------------------AACCCATAACTTATTATTATCCTTGTTCT--CTGCTTGATAAATCTTTGTGTGTCGTGAGCCTGCCATGGCAATTCCTGCCCTTCCCCTGACCCAGTTCAGCTCTTAGTTCTCCCTGCCGAGCTGCTGTACTTCAGAGATTTACACACCTGCCCACCTGCCTGACCCCAGGGGGCCCACTCACCTGAGCTCCTCAGCTTGCCCGAGCTCCTCTGCAAGCTTCTCTTCTGTGAA--CAG-CCG----CTCATCCCTCAGCATAGCTTTTATGAGGTCTTTGCAGTCTTCATAGTCTGAGAAAAGACACACACGCCTGCCTCAGTGAAAGGCTGGACATGCTGCTCTGGTCACTGCCTACAGGGCAGGAGTCAG-GTCCATCCCAAGGACAAAACTGTCCCCACTGCCAGGCTCTACGTAGGGATTTCCACATCTTTA-CTCTTCAGTCTCCCGACTTACTGGCAGC--TGATCCTCCAAAA---
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208145139 948 - 229774977 AGGCTTCCTCTGTATGAGAGAGGGCTCCTGGAAGACCCTCCACGATGTTCCATTCATCTTTCTCTTCTCTCAACAAAAGTAGGTgtcttcctcattcagtttcaaaaaga----catccatcctttcagttcctcaCTCTGGCCATGGACATTTCCACGTGCATATACACATAGTGCATCTTGCAGCGACTAGATACAAAGCCATGGACAGAAATGAGGCCAGGTGCAGATGGGGCCAATTGAAA---------------AGATGAAAGAA---AAGAATGACAGGCTCGAGAAGGTAACATTGA----GTGAAAGCATGAGAAGCCGCAGTCAGTCA----GGAGCTGATTCTGACTAAGGGTGAGTggggtggtgatggcacatcattttgagtatgccgaatgc--tgctcggtggttcccactccttcggttaattttgtgttatgcgcatttcacctcaaCAATTACTTGTTTG-AAAAACAGAAAATAAGGCTC---------------TGAGAAACAACTGC------------------AACCCATAACTTATTATTATCCTTGTTCT--CTGGTTGATAAATCTTTGTGTGTCGTGAGCCTGCCATGGCAATTCCTGCCCTTCCCCTGGCCCAGTTCAGCTCTTAGTTCTCCCTGCCGAGCTGCTGTACTTCAGAGATTTACACACCTGCCCACCTGCCTGACCCCAGGGGGCCCACTCACCTGAGCTCCTCAGCTTGCCCGAGCTCCTCTGCAAGCTTCTCTTCTGTGAA--CAG-CCG----CTCATCCCTCAGCATAGCTTTTATGAGGTCTTTGCAGTCTTCATAGTCTGAGAAAAGACACACACGCCTGCCTCAGTGAAAGGCTGGACATGCTGCTCTGGTCACTGCCTACAGGGCAGGAGTCAG-GTCCATCCCAAGGACAAAACTGTCCCCACTGCCAGGCTCTACGTAGGGATTTCCACATCTTTA-CTCTTCAGTCTCCCGACTTACTGGCAGC--TGATCCTCCAAAA---
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3815497 936 -   8455952 AGGCTTCCTCTGTATCAGAGAGGGCTCCTGCAAGATCCTCCATGATGTTCCATTCATCTTTCCCTTCTGTAAACAAAAGTAGGTGTCTTCCTAATTCCGTTTCAAAAAGA----CATCC----TTTCAGTTCCTCACTCTGGCCATGGACATTTCCATGTGAA-ATACACATAGTGCATCTTGCGGCCACTAGATACAAAGCCATGTACAGAAATGAGGCCAGGTGCAGATGGGGC-AATTGAAA---------------AGATGAAAGAG-AAAAGAATGACAGGGTCGAGAAGGCAACATTGATTGAGTGAAAGAATGAGAAGCCGCAGTCAGTCA----GGAGGTGATTCTCACTAAGGGTAAGTGGGGTGGTGATGGCACACCATTTTGAGTATACTGAATGC--TGCTGTGTGGTT-CCACTCCTTTGGT-AATTTTGTGTTATGTAAATTTCAC-TCAACAATTACTTGTTTG-AAAAAGAGAAAACAAGGCTC---------------TGAGAAACAACTGC------------------AACCCATAACTTATTATTATCCTTGTTCT--CTGCTTGATAA--TCTTGTGTGTC-TGAGCCTGCCATGGCAATTCCTGCCCTTCCCCTGGCCCAGTTC-GTTCTTACTTCTCCCCACCGAGCTGCTGTACTTCAGAGATTTACACACCTGCCC-CCTGCCTGCCCCCA-GGGGTCCCCTCACCTGAGCTCCTCAGCTG--CCGAGCTGCTCTGCAAGCTTCTCCTCCTTGAA--CTGTCCG----CTCATTCCTCAGCATAGATTTTATGAGGTCTTTGCACTCTTCATA-TCTGAGAAAAGACAGACACGCCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCATTGCCTACAGGGCAGGAGCCAG-GTCCATCCCAAGGACAAAACTGTCCCCAGTACCAGGCTCTA-GCAGGGATTTCCACATCTTTA-CTCTTCAGTCTCCTGACTTTCTGGCATC--TGATCCTCCAAAA---
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    270882 944 +    297174 AGGCTTCCTCTATATCAGAGAGGGCTCCTGTAAGATCCTCGATGATGTTCCATTCATCTTTCTCTTCTGTAAACAAAAGTAGATGTCTTCCTAATTCAATTTCAAAATGA----CATCC----TTTCAGTTCCTCACTCTGGCCATGGACACCGCCATGTGAAAATACACATAGTGTCTCTTGCAGCGACTAGATACAAAGCCATGTACAGAAATGAGGCCAGGTGCAGATGGGGagaattgaaa---------------agacaaaagaagaaaagaaTG--AGTGTCAAGAAGGCAACACTGATTGAGTGAAAGAATGAGAAGGAG----CAGTCA----GGAGGTGACTCTGACTAAGGGTAAGTggggtggtgatggcacaccattttgagtatactgaatgc--tgctgggtggctcccactcctttggttaattttgtgttatgcaaatttcacctcaaCAATTACTTGTTTG-AAAAAGAGAAAACAAGGCTC---------------TGAGAAACAACTGC------------------AACCCATAATTTATTACTATCCTTGTTCT--CTGTTTGATAAATATTTGTGTGTCAAGAGCCTACCATGGCAATGCCCGCCTTTCCCCTGGCCCAGCTTAGCTCTTACTTCTCCCCACTGAGCTGCTGTACTTCAGAGATTTACACATCTGTGA-CCTGACTGCCCCCACAGGGCCCCCTCACCTGAGCTCCTCAGCTTGCCTGAGCTGCTCTGCAAGCTTCTCCTCCTTGAA--CTG-CAG----CTCATTCCTCAGCATAGATTTTATGAGGTCTTGGCACTCTTCACACTCTGAGAAAAGACAGACATGCCTGCCTCAGTGGAAAGCTGGACGTGCTGCTCTGGTCACTGCCTACAGGGCAGGAGCCAG-GTCCATCCCAAGGACAAAATTGTCCCCAGTACCAGGCTCTAGGCAGGGATTTCCACATCTTTA-CTCTTCAGTCTCCTGACTTTCTGGCATC--TGATCCTCCAAAA---
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103760109 947 - 225584828 AGGCTTCCTCTATATCAGAGAGGGCTCCTGTAAGATCCTTGATGATGTTCCATTCATCTTTCTCTTCTGTAAACAAAAGTAGGTGTCTTCCTAATTC-GTTTCAAAAAGA----CATCC----TTTCAGTTCCTCACTCTGGCCACGGACATTTCCATGTGAAAATACGCATAGTGCATCTTGCGG-CGATAGATACAAAGCCATGTACAGAAATGAGGCCGGGTGCAGATGGGGAGAATTGAAA---------------AGACGAAAGAAGAAAAGAATGACAGTGTCGAGAAGGCAACATTGAATGAGTGGAAGAATGAGACGCCGTAGCCAGTCA----GGAGGTGATTCTGACTAAGGGTAAGTggggtggtgatgacacaccattttgagtatactgaatgc--tgctgggtggtttgcactcctttgattaatttcgtgttatgtaaatttcacctcaaCAATTATTTGTTTG-AAAAAGAGAAAACAAGGCTC---------------TGAGAAACAACTGC------------------AACCCATAACGTATTATTATCCTTGTTCT--CTGTTTGATAAATATTTGTGTGTTGTGAGCCTGCCATGGCAATTCCTTCCCTTCCCT-GACCCAGCTTAGCTCTTACTTCTCC-CGCCGAGCTGCTGTACATCAGAGATTTACACACCTGCCCACCTGCCTGCCCCCACGGGGCCCCCTCACCTGAGCTCCTCAGCTTGCTTGAGCTGCTCTGCGAGCTTCTCCCCCTTGAA--CTG-CAG----CTCATCCCTCAGCATAGATTTTATGAGGTCTTTGCACTCTTCATACTCTGAGAAAAGACAGACACGCCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCACTGCCTACAGGGCAGGAGGCAG-GTCCATCCCAAGGACAAAACTGTCCCCGCTACCAGGCTCTAGGCAGGGATTTCCACATCTTTA-CTCTTCAGTCTCCCGACTTTCTGGCATC--TGATCCTCCAAAA---
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211905328 949 + 227556264 AGGCTTCGTCTATATCAGAGAGGGCTCCTGTAAGATCCTCGACAATGTTCCATTCATCTTTCCCTTCTGTAAACAAAAGTAGGTGCCTTCCTTATTCAGTTTCAAAAAGACATTCATCC----TTTCAGTTCCTCACTCTGGCCATGGACATTTCCATGTGAAAATACACATAGTGCATCTCGCAGTCTCTAGATGCAAAGCCATGGACAGAAATGAGGCCCGGTGCAGAGAGGACCAGTCGAAA---------------AGATGAAAGAAGAAAAGAATGACAGGCTCCAGAAGTC--TTGTGATTGACCGAAAGGATGAGAAGCCGCAGTCAGTCA----GGAGGTGATTCTGACTAAGGGTAAGTGGGTtggtgatggcgcaccattttgagtacactgaatgc--tgttgggtggttcccactcctttagttaattttgtgttatgcaaatttcacctcaaCAATTACTTCTTTG-AAAAAGAGAAATCATGGCTC---------------TGAGAAACAACTGC------------------AACCCATAACTTATTATTATCCTTGTTCT--CTGTTTCATAAATCTTTGTGTGTTGTGAGCCTGCCATGGCAATTCCTGCCCTTCCCCAGACCCAGCTTAGCTCTTACTTCACCTCGCCGAGCGGCTGTACTTCAGAGATTTACACACCTGCCCACCTGCCTG----CATAGGGCCCCCTCACCTGAGCTCTTCAGCTTGCCCGAGCTGCTCTGCAAGCTTCTCCTCCTTCAA--CTG-AAG----CTCATCCCTTAGCATAGATTTTAGGAGGTCTTTGCACTCTTCATAGTCTGAGAAAAGACAGACACACCGGCCTCAGTGAAAAGCTGGACACACAGCGGTGGTCACTGCCTACAGGGCAGGAGCCAG-GTCCATCCCAAGGACACAACTGACCCCAGTACCAGGCTCCAGGCAGGGATTTCCACCACTTTA-CTCTTCAGTCTCCCGACTTTCTGGCATC--CTATCCTCCAAAG---
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11413037 941 -  14060431 AGGCTTCCTCTATATCAGAGAGGGCTCCTGTAAGCTCCTTGATGATATTCCATTCATCTTTCTCTTCTGTAAACAAAAGTAGGTGTCTTCCTAATTC-GTTTCAAAAAGA----CATCC----TTTCAGTTCCTCACTCTGGCCACGGACATTTCCATGTGAAAATACGCATAGTGCATCTTGCGG-CGATAGATACAAAGCCATGTACAGAAATGAGGCCGGGTGCAGATGGGGCGAATTGAAA---------------AGAGGAAAGAAGAAAAGAATGACAGGGCCGAGAAGGCAACATTGATTGAGTGAAAGAATGAGATGGCACAGCCACTCA----GGAGGTGATTCTGACTAAGGGTAAGTggggtggtgatgacacaccattttgagtatactgaatgc--tgttgggtggttcccactcctttggttaattttgtgttatgtaaatttcacctcaaCAATTACTTGTTTG-AAAAAGAGAAAACAAAGCTC---------------TGAGAAACAACTGC------------------AACCCATAAC------TTATCCTTGTTCT--CTGTTTGATAAATATTTGTGTGTCGTGAGCCTGCCATGGCAATTCCTGCCCTTCCCT-GACCCAGCTTAGCTCTTACTTCTCC-CGCCGAGCTGCTGTACATCAGAGATTTACACACCTGCCCACCTGCCTGCCCCCACGGGGCCCCCTCACCTGAGCTCCTCAGCTTGCTTGAGCTGCTCTGCGAGCTTCTCCCCCTTGAA--CTG-CAG----CTCATCCCTCAGCATAGATTTTATGAGGTCTTTGCACTCTTCATACTCTGAGAAAAGACAGACACGCCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCACTGCCTACAGGGCAGGAGGCAG-GTCCATCCAAAGGACAAAACCGTCCCCGCTACCAGGCTCTAGGCAGGGATTTCCACATCTTTA-CTCTTCAGTCTCCCGACTTTCTGGCGTC--GAATCCTCCAAAA---
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1023438 949 -   1280666 AGGCTTCCTCTGTATCAGAGAGGGCTCCTGTAAGATCCTTGATGATGTTCCATTCATCTTTCTCTTCTGTAAACAAAAGTAGGTGTTTTCCTAATTCCATTTCAAAAAGA----CATCC----TTTCAGTTCCTCACCCTGGCCACAGACATTTCCATGTGAAAATACGCATAGTGCATCTTGCAG-CGATAGATACAAAGCCATGTACAGAAATGAGGCCGGGTGCAGATGTGGCGAGTTGAAA---------------AGACGAAAGAAGAAAAGAATGACAGGGCCGAGAAGGCAACATTGATTGAGTGGAAGAATGAGACGCCGCAGCCAGTCA----GGAGGTGATTCTGACTAAGGGTAAGTggggtggtgatggcacaccattttgagtatactgaatgc--tgctgggtggttcgcactcctttgattaatttcgtgttatgtaaatttcacctcaaCAATTACTTGTTTG-AAAAAGAGAAAACAAGGCTC---------------TGAGAAACAACTGC------------------AACCCATAACTTATTATTATCCTTGTTCT--CTGTTTGATAAATATTTGTGTGTCATGAGCCTGCCATGGCAATTCCTTCCCTTCCCT-GACCCAGCTTAGCTCTTACTTCTCCCCGCTGAGCTGCTGTACATCAGAGATTTATACACCTGCCCACCTGCCTGCCCCTACGGGGCCCCCTCACCTGAGCTCCTCAGCTTGCTTGAGCTGCTCTGCAAGCTTCTCCGCCTTGAA--CTG-CAG----CTCATCCCTCAGCATAGATTTTATGAGGTCTTTGCACTCTTCATACTCTGAGAAAAGACAGAGACGCCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCACTGCCTACAGGGCAGGAGGCAG-GTCCATCCCAAGGACAAAACTGTCCCCACTACCAGGCTCTAGGCAGGGATTTCCACATCTTTA-CTCTTCAGTCTCCCGACTTTCTGGCATC--TGATCTTCCAAAA---
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             508623 947 -   1325925 AGGTTTCCTCTGTATCAGAGAGGATTCCTATAAGATCCTTGATGATGTTCCATTCATCTTTCTCTTCTGTAAACAAAAGTAGGTGTTTTCCTAATTCCATTTC--AAAGA----CATCC----TTTCAGTTCCTCACCATGGCCACGGACATTTCCATGTGAAAATACGCATAGTGCATCTTGCGG-CGATAGATACAAAGCCATGTACAGAAATGAGACCAGGTGCAGATGGGGCGAATTGAAA---------------AGACGAAAGAAGAAAAGAATGACAGGGTCGAGAAGGCAACATTGAATGAGTGGAAGAATGAGACACCGTAGCCAGTCA----GGAGGTGATTCTGACTAAGGGTAAGTggggtggtgatgacacaccattttgagtatactgaatgc--tgctgggtggtttgcactcctttgattaatttcatgttatgtaaatttcacctcaaCAATTACTTGTTTG-AAAAAGAGAAAACAAGGCTC---------------TGAGAAACAACTGC------------------AACCCATAACTTATTATTATCCTTGTTCT--CTGTTTGATAAATATTTGTGTGTCATGAGCCTGCCATGGCAATTCCTTCCCTTTCCT-GACCCAGCTTAGCTCTTACTTCTCCCCGCCGAGCTGCTGTACGTCAGAGATTTACACACCTGCCCACCTGCCTGCCCCCACGGGGCCCCCTCACCTGAGCTCCTCAGCTTGCTTGAGCTGCTCTGCGAGTTTCTCCCCCTTGAA--CTG-CAG----CTCATCCCTCAGCATAGATTTTATGAGGTCTTTGCACTCTTCATACTCTGAGAAAAGACAGACACGCCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCACTGCCTACAGGGCAGGAGGCAG-GTCCATACCAAGGACAAAACTGTCCCCGCTACCAGGCTCTAGGCAGGGATTTCCACATCTTTA-CTCTTCAGTCACCCGACTTTCTGGCATC--TGATCCTCCAAAA---
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3747404 953 -   3775709 AGGCTTCCTCTATATCAGAGAGGACTCCTGTAAGATCCTCGACGATGTTCCGTTCATCTTTCCCTTCTGTAAACAAAAGCAGGTGTCTTCCTTATTCGCTTTCAAAAAGACGTCCATCC----TTTCAGTTCCTCACTCTGGCCATGGACATTTCCATGTGAAAATACACATAGTGCATCTCGCAGTCACTAGATACAAAGCCATGGACAGAAATGAGGCCAGGTGCAGATGGGGCCAATTGAAA---------------AGATGAAAGAAGAAAACAATGACAGGTTCCAGAAGGCAACATTGATTGAGGGAAAGGATAAGAAGCTGCAGTCAGTCA----GGAGGTGATTCTGACTAAGGGTAAGTggggtggtgatggcgcaccattttgattacactcaatgctatgctgggtggttcccactcccttagttaattttgtgttatgcaaatttcacctcaTCAATTACTTCTTTC-AAAAAGAGAAATCAAGGCTC---------------TGAGAAACAACTGC------------------AACCCATAACTTATTATTATCCTTGTTCT--CTGTTTCATCAATCTTTGTGTGTTGTGAGCCTGCCATGGCAATTCCTGCTCTTCCCCAGACCCAGCTTAGCTCTTACTTCAACCCGCCCAGCTGCTCTGCTTCAGAGATTTACACACCTGCCCACCTGCATG----CATAGGGCCCCCTCACCTGAGCTCCTCAGCTTGCCTGAGCTGCTCTGCAAGATTCTCCTCCTTGAA--CTG-AAG----CTCATCCCGCAGCATAGATTTTAGGAGGTCTTTGCACTCTTCACACTCTGAGAAAAGACAGACATACTGGCCTCAGTGAAAAGCTGAACACACAGCGGTGGTCACTGCCTACAGGGCAGGAGCCAG-GTCCATCCCAAGGACATAACTGTCCCCAGCACCAGGCTCTACGTAGGGAACTCCACCTCTTTA-CTCTTTAGTCTCCCGACTTTATGGCATC--TCATCCTCCAAAA---
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3658140 952 +  47448759 AGGCTTCCTCTGAATCAGAGAGAGCTCCTGTAACATCCTCTATGATGTTCCACTCATTTATGTCTTCTGTAAACAAAAGTCTGTGTCTTCCTAAGTCAGTTTCAAGGGGA----TGTCC----TTTCAGCTCCTCACTTTGGTCATGGACATTTCTATGTGAAAATTCACATACTGAATCTTGCAGTGACTGGAAACAGAGCTGTACACAGACAAGTGGCCAGGGGCAGATGGAGTGAATTGGAA---------------AGATGAAAGAAGAAAGAAATGGCAGG-TCAAGAAGGCAATATTGATTGAATGAA-----GAGTTGCTGCGGTCAGCGA----GGAGGTGAAT----CTAAGAGTACATGGGATA------------------gagtgtactaaacgc--tgctgggtggttcactttattttaattaatttta-gatatgcaaattttgactcaaCATTTGGTTGTTTATAAAAAGTGTAATCAAAGCTCAAGGNNNNNNNNNNATGAGACATGCCTGCCCCAGTGGACGGCAGTGGAAGTCGTAATGTGCTAAGATTACTGT--T--CTGTTTTATGAGTGCTGCTCTGAAATGTGCCTGCCATGTAAATGTCTGTCCTGGTCCTGGCCCAGCTTAGCTGCTGGTTCTCCCAGTTGATGTGCTGCACTTCAGAGATTCACACCTTTGCCC-CCCACCAGTCCCCACAGCGTCTGCTCACCTGAGCTCCTCAATTAATTTGAATTCCTC-ATACATTGTTTCTTCTCCAATTTTG-TAGATGTCTCTCTCCAGAGACTGGATATTAAGG-----TGGTATTCATCGAAGTCTGAGAAAAGAAAGTCATGCCTGCCTCAGTGGAAGGCTGGACAGGCTGTTGTGGTCACTGCCTACATGGCAGGTGGCAGCATTTATCCCAA--ACAAAGGCATCTCCACTATCAGGCTTCAGTGAGGGATTTCCTCATTTTTA-GTTATAAACCTCCCAACTCACTGGCATC--TGATACTCTCCAA---
i calJac3.chr18                   I 374 C 0
s otoGar3.GL873592                  8647042 919 -   9938236 AGGCCTTGCCAGTATTGGAGCGTGCTCCT-TAAGATTCC-----ACACTCCGTTCCTGTTTTTCTTCTGCAAACAAAACTGCATCAGTTCCTAA-TCAGATTCACAAAGA----TGTCC----CTTTGTTTCCTCGCTTTGGCCA--GCCATCTCCACATGCAAATATACTGAGTGCAAGGTGC-----------ACAAAGCCACACACAGGCATGTGACCCGGTCCAGCCAGGGCTAAGTGGAAATGGGCTAAGTGGCTAAGTGGAAGAACAGAAG-ACGACAGGTTCAAGAAGACCACATTCTTTAGGTGAAAGAATCAGAAGCCACAGTCAGTCAGGAGGGAGGTGATTGTGG-TCAGAGAAAATGTGGTGGTGGCTGCTCTCCATTTTGAGTATCCTCAAA----TGTTGACCTATTTGCTTTTCCTTGGTTAATCTC-----ACGTGAATTTCACTTTCATAATTAGGTGTTTT-GGAAAC--AACACATAGCTC---------------TGTGTAAAAACTGC-----------------------ATAACTTACCATTATTTTTGTTATACTTGTTTTATAAGTATTTGTGAGACACATGGCTGCCATGTCAACTCCTACCTCCTCCT-GGCCCGGGTGAGCTCT--ATTGTCTCGGCTGAGCTTTCCCCTCTCAGGAATTCTCACACC---------------CCCCACA--GCCCCCTTACCTGAGCTTTTTAGCTAGTGTCAACGTCTCTGCCTGCTCCTCCACTTCGAA--ATT-TGG----CTTCTCACCCAGCATGGACTCCATGATGTCTCTGCACTCTTCACA--CTGAGAAAAGACAGACGCACCTGCCATAGTGAAA-GCTGGCCATGCTGCTGAGGTCACTGCCCACAGGGAAGGAGGCAG-GGCCCATCCTGGGACAAAAGTATCCCCAGCACCAGGCTCTATTTGGGGATTTTCAAATACGTATTTCCTCAATTTTCCAACTATGTAGCACTGATAATTCTCTTACAGGA
i otoGar3.GL873592                C 0 I 132
e nasLar1.chr1                    197954196 9306 - 215897965 I
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I

a score=24805.000000
s hg38.chr1_KI270711v1_random         27622 18 +     42210 TTTAAAGACGA----------------AGAAA-G-A
s panTro5.chr1                    208012075 14 - 228573443 TTTAGAGAC--------------------AAA-G-A
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208146087 14 - 229774977 TTTAGAGAC--------------------GAA-G-A
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3816433 15 -   8455952 TTTAGAGAT--------------------GAA-GAA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    271826 18 +    297174 TTTAGGAACGA----------------AGAAA-G-A
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103761056 14 - 225584828 TTTAGAGAC--------------------AAA-G-A
i rheMac8.chr1                    C 0 I 4
s macFas5.chr1                    211906277 15 + 227556264 TTTAGAGAC--------------------AAACA-A
i macFas5.chr1                    C 0 I 4
s macNem1.NW_012017688v1           11413978 14 -  14060431 TTTAGAGAT--------------------GAA-G-A
i macNem1.NW_012017688v1          C 0 I 4
s chlSab2.chr20_KE148050v1_random   1024387 14 -   1280666 TTTAGAGAC--------------------AAA-G-A
i chlSab2.chr20_KE148050v1_random C 0 I 4
s manLeu1.NW_012105087v1             509570 14 -   1325925 TTTAGAGAC--------------------AAA-G-A
i manLeu1.NW_012105087v1          C 0 I 2
s colAng1.NW_012114988v1            3748357 14 -   3775709 CTTACAGAT--------------------GAA-G-A
i colAng1.NW_012114988v1          C 0 I 4
s calJac3.chr18                     3659092 14 +  47448759 CTTAGAGAT--------------------GGG-G-A
i calJac3.chr18                   C 0 I 4
s otoGar3.GL873592                  8648093 32 -   9938236 TTTAAAGATCATTAATTAAATTGTTTTCAAAA----
i otoGar3.GL873592                I 132 C 0
e nasLar1.chr1                    197954196 9306 - 215897965 I
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I

a score=120369.000000
s hg38.chr1_KI270711v1_random         27640 26 +     42210 GAAACTCAA-GGCACATCAAGGAAGTT
s panTro5.chr1                    208012089 26 - 228573443 GAAACTCAG-GGCACATCAAGGAAGTT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208146101 26 - 229774977 GAAACTCAA-GGCACATCAAGGAAGTT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3816448 27 -   8455952 GAAACTCAAGGGCACATCAAGGAAGTT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    271844 27 +    297174 GAAACTCAGGGGCACATCAAGGAAGTT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103761074 26 - 225584828 GAAACTCAA-GGCACATCAAGGAAATG
i rheMac8.chr1                    I 4 C 0
s macFas5.chr1                    211906296 27 + 227556264 GAAACTGAAGGGCACATCAAGGAAGTT
i macFas5.chr1                    I 4 C 0
s macNem1.NW_012017688v1           11413996 27 -  14060431 GAAACTCAAGGGCACATCAAGGAAGTT
i macNem1.NW_012017688v1          I 4 C 0
s chlSab2.chr20_KE148050v1_random   1024405 27 -   1280666 GAAACTCAAGGGCACATCAAGGAAATT
i chlSab2.chr20_KE148050v1_random I 4 C 0
s manLeu1.NW_012105087v1             509586 27 -   1325925 GAAACTCAAGGGCACATCAAGGAAGTT
i manLeu1.NW_012105087v1          I 2 C 0
s calJac3.chr18                     3659110 27 +  47448759 GAAACTCATTGGCACATCAAGTAACTT
i calJac3.chr18                   I 4 C 0
s otoGar3.GL873592                  8648125 26 -   9938236 GAAATTCAA-AGCACAGTAAGTATATT
i otoGar3.GL873592                C 0 I 93
e nasLar1.chr1                    197954196 9306 - 215897965 I
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3748371  4 -   3775709 I
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I

a score=101146.000000
s hg38.chr1_KI270711v1_random         27666 24 +     42210 GACAAGATGATTCAACCTCAACGA
s panTro5.chr1                    208012115 24 - 228573443 GACAAGATGATTAAACCACAATGA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208146127 24 - 229774977 GACAAGATGATTCAACCACAATGA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3816475 24 -   8455952 GACAAGATGATTCAACCACAACGA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    271871 24 +    297174 TACAAGATGATTCAACTACAATGA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103761100 24 - 225584828 GACAAGATGATTCAACCACAATGA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211906323 24 + 227556264 GACAAGATGATTCAATCACAATAA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11414023 24 -  14060431 GACAAGATGATTCAACCACAACGA
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1024432 24 -   1280666 GACAAGATGATTCAACCACAACGA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             509613 24 -   1325925 GACAAGATGATTCAACCACAACGA
i manLeu1.NW_012105087v1          C 0 C 0
s calJac3.chr18                     3659137 24 +  47448759 GACAGGATGATTCACCTTGGATGA
i calJac3.chr18                   C 0 I 307
e otoGar3.GL873592                  8648151 93 -   9938236 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3748371  4 -   3775709 I
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I

a score=17190.000000
s hg38.chr1_KI270711v1_random         27690 4 +     42210 AGTG
s panTro5.chr1                    208012139 4 - 228573443 AGTG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208146151 4 - 229774977 AGTG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3816499 4 -   8455952 AGTG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    271895 4 +    297174 AGTG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103761124 4 - 225584828 AGTG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211906347 4 + 227556264 AGTG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11414047 4 -  14060431 AGTG
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1024456 4 -   1280666 AGTG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             509637 4 -   1325925 AGTG
i manLeu1.NW_012105087v1          C 0 C 0
e otoGar3.GL873592                  8648151 93 -   9938236 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3659161 307 +  47448759 I
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3748371 4 -   3775709 I
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I

a score=116993.000000
s hg38.chr1_KI270711v1_random         27694 26 +     42210 GACTCAGAACTCACAGCCCCTGAGGT
s panTro5.chr1                    208012143 26 - 228573443 GAGTCAGAATTCACAGCCCCTGAGGT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208146155 26 - 229774977 GAGTCAGAATTCACAGCCCCTGAGGT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3816503 25 -   8455952 GAGTCAGAATTCACAG-CCCTGAGGT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    271899 26 +    297174 GAGTCAGAATTCATAGCCCCAGAGAT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103761128 26 - 225584828 GAGTCAGAATTCATAGCCCCTGAGGT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211906351 26 + 227556264 GAGTCAGAATTCACAGCCCCTGAGGT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11414051 26 -  14060431 GAGTCAGAACTCACAGCCCCTGAGGT
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1024460 26 -   1280666 GAGTCAGAATTCACAGCCCCTGAGGT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             509641 26 -   1325925 GAGTCAGAATTCACAGCCCCTGAGGT
i manLeu1.NW_012105087v1          C 0 C 0
s calJac3.chr18                     3659468 26 +  47448759 GAGTCAGAATTCATAGCCCCCAAAGT
i calJac3.chr18                   I 307 C 0
e otoGar3.GL873592                  8648151 93 -   9938236 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3748371  4 -   3775709 I
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I

a score=791218.000000
s hg38.chr1_KI270711v1_random         27720 192 +     42210 CTGACTCTGAATGCGGGGCCACTTTCCCAAGCCTGGCAGCCTCTCCTCTGAAACACTGCACTGGGGCATGAAGTAGTGATTTCTTGTACAGTCGGGAAGG-CCCCTAGGACTATGGGACTGATGGTTTCCCTTTTACTGGGTATTTCAAGGACAAATATGTCAAGGACTTTAAA-ACATTTCATTTTTAAATCA
s panTro5.chr1                    208012169 193 - 228573443 CTGACTGTGAATGCGGGGCCACTTTCCCAAGCCTTGCAGCCTCTCCTCTAAAGCACTGCACTGGGGCATGAAGTAGTGATTTCTTGTACAGTCGGGAAGG-CCCCTAGGACTATGGGACTGATGGTTTCCCTTTTACTGGGAATTTCAAGGACAAATATGTCAAAGATCTTAAACATCTTTGATTTTTACATCA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208146181 193 - 229774977 CTGACTGTGAATGCGGGGCCACTTTCCCAAGCCTTGCAGCCTCTCCTCTAAAGCACTGCACTGGGGCATGAAGTAGTGATTTCTTGTACAGTCGGGAAGG-CCCCTAGGACTATGGGACTGTGGGTTTCCCTTTTACTGGGAATTTCAAGGACAAATATGTCAAAGATCTTAAACATCTTTGATTTTTACATCA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3816528 190 -   8455952 CTGACTCTGAATG-GGGGCCACTTTCCCAAGCCTTGCAGCCTCTCCTCTAAAACACTGCACTGGGGCATGAAGTAGTGATTTCTTGTACAGTCGGGAAGG-CCCCTAGGACTATGGGACTGATGGTTTCCCTTTTACTGGGAATTTCAAGGACAAATATGTCAAAGATTTTAAA-ATCTTTCATTTTTAAATC-
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    271925 194 +    297174 TTGACTCTGAATGCGGGGCCACTTTCCCAAGCCTTGCAGCCTCTCCTCTAAAACACTGCACTGGGGCATGAAGTAGTGATTTCTTGTACAGTCAGGAAGGCCCCCTAGTACTATGGGACTGATGGTTTCCCTTTTACTGGGAATTTCAAGGACAAATATGTCAAAGATTTTTAAAATCTTTGATTTTTAAACCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103761154 188 - 225584828 CTGAGTCTGAATGCGGGGCTGCTTTCCCAAGCCTT-CAGCCTCTCCTCTAAAACACTGCACTGGGCCATGAAGCAGTGATTTCTTGTACAGTTGGGAAGG-CCCCTAGGACTATGGGACTGATGGTTTCCCTTTTACTGGGAATTTCAAGGACA----TGTCAAAGATTTTTAAAATCTTTGATTTCTAAATCA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211906377 189 + 227556264 GTGACTCTGCATGCCGGGCCACTTCCCCAAGCCTTGCAGCCTCTCCTCCAAAACACTGCACTGGGGCATGAAGTAGAGATTTCTTGGACAGTTGGGAAGG-CCCCTAGGACTATGGGACTGATGGTTTCCGTT----CGGGAATTTCAAGGACAAATCTGTCAAAGATCTTAAAAATCTTTGATTTTTAAATCA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11414077 190 -  14060431 CCAAGTCTGAATGTGGGGCCGCTTTCCCAAGCCTT-CAGCCTCTCCTCTAAAACACTGCACTGGGCCATGAAGCAGTGATTTCTTGTA-AGTCGGGAAGG-CCCCTAGGACTATGGGACTGACGGTTTCCCTTTTACTGGGAATTCCAAGGACAAGTATGTCAAAGATTTT-TAAATCTTTGATTTTTAAATCA
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1024486 192 -   1280666 CTGAGTCTGAATGTGGGGCTGCTTTTCCAAGCCTT-CAGCCTCTCCTCTAAAACACTGCACTGGGCCATGAAGCAGTGATTTCTTGTACAGTCGGGAAGG-CCCCTAGGACTATGGGACTGATGGTTTCCCTTTTACTGGGAATTTCAAGGACAAGTATGTCAAAGATTTTTAAAATCTTTGATTTCTAAATCA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             509667 192 -   1325925 CTGAGTCTGAATGCGGGGCCGCTTTCCCAAGCCTT-CAGCCTCTCCTCTAAAACACTGCACTGGGCCATGAAGCAGTGATTTCTTATACAGTTGGGAAGG-CCCCTAGGACTATGGGGCTGATGGTTTCCCTTTTACTGGGAATTTCAAGGACAAGTATGTCAAAGATTTTTAAAATCTTTGATTTCTAAATCA
i manLeu1.NW_012105087v1          C 0 C 0
s calJac3.chr18                     3659494 174 +  47448759 CTGGCTCTGAATCCTGGGACAGTTTTTCAAGGTTTGCCACCTCTCCTGTCAAACACTCTACTGGGGCATGAAGTAGTGATATCCTGCACAGTAGGAAAGA-CCCTTAGGTGTATGGGACTCATGGATTCCCTGGTACTGGGAATTTTTAGCACAAATATGTCAAAGATTCTAAGT-------------------
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8648244 175 -   9938236 CTGACTTTGAATTACCAGTCA-TTTCCCAAGCTTG-CAGCCTGCTATGTAAAACCCTGTGGTGGAGCAGCAAGGAGCAATTTCCTGTGCAGCTGGGAAGG-CCTTGAGGATGACAGGACTGATGGG-TCCCTTGTGCTGGAAATTGTAAGCACT-TTACCACAAAGATTTAAAAAA------------AGAA--
i otoGar3.GL873592                I 93 C 0
e nasLar1.chr1                    197954196 9306 - 215897965 I
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3748371   4 -   3775709 I
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I

a score=6006.000000
s hg38.chr1_KI270711v1_random         27912 1 +     42210 T
s panTro5.chr1                    208012362 1 - 228573443 T
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208146374 1 - 229774977 T
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3816718 1 -   8455952 T
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272119 1 +    297174 T
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103761342 1 - 225584828 T
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211906566 1 + 227556264 T
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11414267 1 -  14060431 T
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1024678 1 -   1280666 T
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             509859 1 -   1325925 T
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197963502 1 - 215897965 T
i nasLar1.chr1                    I 9306 I 406
s calJac3.chr18                     3659668 1 +  47448759 T
i calJac3.chr18                   C 0 C 0
e otoGar3.GL873592                  8648419 0 -   9938236 C
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3748371 4 -   3775709 I
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I

a score=367989.000000
s hg38.chr1_KI270711v1_random         27913 90 +     42210 ATATTCAGATATGGTTTTAAGAATCATATCTGAA-------GCATAAAGTGTGAGACAGAAGACAATAAGGCCATGAAGGAAATATGCCCAAATACT
s panTro5.chr1                    208012363 90 - 228573443 ATCTTTAGATGTGATTTTAAGAATCACATCTGAA-------GCATAAAGGATGAGACATAAGACCATAAGGCCATGAAGGAAATCTGCCCAAATACT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208146375 90 - 229774977 ATCTTTAGATGTGATTTTAAGAATCACATCTGAA-------GCATAAAGGATGAGACATAAGACCATAAGGCCATGAAGGAAATCTGCCCAAATACT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3816719 87 -   8455952 ATCTTCAGA--TGATTTTAAGAATCATATCTGAA-------GCATAAAGG-TGAGACATAAGACCATAAGGCCATGAAGGAAATATGCCCAAATACT
i gorGor5.CYUI01015145v1          C 0 I 5
s nomLeu3.chr24_GL397604_1_random    272120 90 +    297174 ATCTTTAGGTATGATTTTGAGAACCATATCTGAA-------GCATAAAGTATGAGGCATAAGACCATAAGGCCATGAAGGGAATATGCCCAAATGCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103761343 90 - 225584828 ATCTTCAGATATGATTTTAAGAATCATATCTGAA-------ACATAAAGTATGAGACATAAGACCATAAGGCCATGAAGGAAATATGCTCAAATACT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211906567 90 + 227556264 ATCTGCAGATATGATTTTAACAATCATAACAGAA-------ACATAAAGTATGAGACATAAGACCACAAGACCATGAAGGAAATATGCCCTAATACT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11414268 90 -  14060431 ATCTTCAGATAATATTTTAAGAATCATATCTGAA-------ACATAAAGTATGAGACATAAGACCATAAGGCCATGAAGGAAATATGCCCAAATACT
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1024679 90 -   1280666 ATCTTCAGATATGATTTTAAGAATCATATCTGAA-------ACATAAAGTATGAGACATAAGACCATAAGGCCATGAAGGAAATGTGCCCAAATACT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             509860 90 -   1325925 ATCTTCAGATAAGATTTTAAGAATCATATCTGAA-------ACATAAAGTATGAGACATAAGACCATAAGGCCATGAAGGAAATGTGCTCAAATACT
i manLeu1.NW_012105087v1          C 0 C 0
s calJac3.chr18                     3659669 71 +  47448759 ATATCTGAATATAATT-------------------------GCATAAA-TATGAGGCTTAAGGCCCTGAGGTCATGATAGAAATATGACCAAATACT
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8648419 76 -   9938236 ------------------AAAAATCATATGTGAATGCAATTGTGTAAAATGTAAGAC--AAGACCATAAAGCCATGAAGGAAATA-ATCCAAATACT
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197963503 406 - 215897965 I
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3748371  4 -   3775709 I
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I

a score=-15518.000000
s hg38.chr1_KI270711v1_random         28003 59 +     42210 TTATTAGTATGACAGGCAGCATCAAGATTTAGATTAGTTGTGTTAATTTAGAAACAGCA
s nomLeu3.chr24_GL397604_1_random    272210  2 +    297174 ----------------------------------------------------AA-----
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103761433  5 - 225584828 -------------------------------------------------AATAA-----
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211906657  5 + 227556264 -------------------------------------------------AACAA-----
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11414358  5 -  14060431 -------------------------------------------------AATAA-----
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1024769  5 -   1280666 -------------------------------------------------AACAA-----
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             509950  5 -   1325925 -------------------------------------------------AATAA-----
i manLeu1.NW_012105087v1          C 0 C 0
s calJac3.chr18                     3659740  2 +  47448759 ----------------------------------------------------AA-----
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8648495  2 -   9938236 ----------------------------------------------------AA-----
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197963503 406 - 215897965 I
e gorGor5.CYUI01015145v1            3816806  5 -   8455952 I
e panPan2.chr1                    208146465  0 - 229774977 C
e panTro5.chr1                    208012453  0 - 228573443 C
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3748371  4 -   3775709 I
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1_random               9205911 10892 +  35968885 I

a score=4432.000000
s hg38.chr1_KI270711v1_random         28062 3 +     42210 TAA
s panTro5.chr1                    208012453 2 - 228573443 -AA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208146465 2 - 229774977 -AA
i panPan2.chr1                    C 0 C 0
s ponAbe2.chr1                    107372465 3 + 229942017 TAA
i ponAbe2.chr1                    I 10892 I 5115
s nomLeu3.chr24_GL397604_1_random    272212 3 +    297174 TAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s calJac3.chr18                     3659742 3 +  47448759 TAA
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8648497 3 -   9938236 TAA
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197963503 406 - 215897965 I
e gorGor5.CYUI01015145v1            3816806 5 -   8455952 I
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3748371 4 -   3775709 I
e manLeu1.NW_012105087v1             509955 0 -   1325925 C
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e macFas5.chr1                    211906662 0 + 227556264 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    103761438 0 - 225584828 C
e chlSab2.chr20_KE148050v1_random   1024774 0 -   1280666 C
e macNem1.NW_012017688v1           11414363 0 -  14060431 C

a score=721902.000000
s hg38.chr1_KI270711v1_random         28065 163 +     42210 GATTAGTTTGTGTTAATTTAGAAACATCAGAATGAAGAACTAATAGATagtgtttacactgtgccaattaatgttcaaggagattgacaggaaatacctcatgtaattcattgcagcaatttacagaggtaggtattattgtagtaccctctgaacagatgag
s panTro5.chr1                    208012455 159 - 228573443 G----GTTTGTGTTAATTTAGAAACAGTAGAATGAAGAACTAACAGAgagtgttcactctgtgccaataaaagttctaggagattgacaagaaacagctcatgtaattcattgcagcaatttacagaggtaggtatttctgtagtaccctatgtacagatgag
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208146467 159 - 229774977 G----GTTTGTGTTAATTTAGAAACAGTAGAATGAAGAACTAACAGAgagtgttcactctgtgccaataaaagttctaggagattgacaagaaacagctcatgtaattcattgcagcaatttacagaggtaggtatttctgtagtaccctatgtacagatgag
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3816811 156 -   8455952 ------GTTGTGTTAATTTAGAAACAGCAGAATGAAGAACTAATAGATagtgtttactctgtgccaataaatgttctaggagattgacaagaaatagctcatgtaattcattgcagcaatttacagaggtaggtattt-tgtagtaccctctgaacagatgag
i gorGor5.CYUI01015145v1          I 5 C 0
s nomLeu3.chr24_GL397604_1_random    272215 159 +    297174 ----AGTTTGTGTTAATTTAGAAACAGTAGAATGAAGAACTAATTGATACTgtttactctgtgccaataaatgttctaggagattggcaagaaatagctcatgtaatttatttcagaaatttacagaggtaggtattattgtcgtaccctgtgaacagatgag
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103761438 159 - 225584828 ----AGTTTGTGTTAATTTAGAAACAGTAGAATGAAGAACTAATAGATagtgtttactctgttccagtaagtgttctaggagattgacaagaaatagctcatgtaattcactgcagcaatttacagaggtaggtattattgtagtaccctatgaacagatgag
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211906662 159 + 227556264 ----AGTTTGTGTTAATTTACAAACAGTAGAATGAGGAACTAATAGATagtgtttactctgtgccaataaatgttccaggagattgacaagaaataactcatgtaactcattgcagcaatttacagaggtaggtattactgtagcaccctatgaacagatgag
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11414363 159 -  14060431 ----AGTTTGTGTTAATTTAGAAACAGTAGAATGAAGAACTAATAGATagtgtttactctgtgccaataaacgttctaggagattgacaagaaatagctcatgtaattcactgcagcaatttacagaggtaggtattattgtagtaccctatgaacagatgag
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1024774 159 -   1280666 ----AGTTTGTGTTAATTTAGAAACAGTAGAATGAAGAACTAATAGATagtgtttactctgtgccagtaaatgttctaggagattgacaagaaatagctcatgtaattcactgcagcaatttacagaggtaggtattattgtagcaccctatgaacagatgag
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             509955 159 -   1325925 ----AGTTTGTGTTAATTTAGAAACAGTAGAATGAAGAACTAATAGATagtgtttactctgtgccagtaagtgctctaggagattgacaagaaatagctcatgtaattcactgcagcaatttacagaggtagctattattgtagtaccctatgaacagatgag
i manLeu1.NW_012105087v1          C 0 C 0
s calJac3.chr18                     3659745 159 +  47448759 ----AGTTTGAATTAAGTGAGAAATAGTAGAATCAAGAACTAATAGATagtgtttgctctgtgccaagaattgttctagcagatttagaagaaacaggtcaggtaattcattgcagcaatttacagagctaggtattattatagtacccaatgaacaaatgag
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8648500 116 -   9938236 ----AGTTTGTGTTAAATTGGCAATAGAAGAA-------------------------------------------ctaagagatttacaagaagtatgtcacataattcatagcagatatttaaaaaggtaggtactatgatagctccaaattaacagagcag
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197963503 406 - 215897965 I
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3748371   4 -   3775709 I
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=800397.000000
s hg38.chr1_KI270711v1_random         28228 153 +     42210 gaa----------actgagggacagacaagacaagcaacttgGATGGAGCCCAGGAGACAGGCTGAGGGTCCCTGCTTTGCACACTGCACTGCTGCTTCCACACATTCTCGGGTGTGATCTTTCTTCCTCTTTAGGAACAAGAGCCTGTGCACCAGGAATCAG
s panTro5.chr1                    208012614 153 - 228573443 gaa----------actgagggacagacaagacaagcaacttgGATGGAGCCCAGGAGACAGGCCCAGAGTCCCTGCTCTGCACACTGCACTGCTACTTCCACACATTCTCGGGTGCGATCTTTCTTCCTGTTTAGGAACAAGAGCCTGTGCCCCAGGAAGCAG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208146626 153 - 229774977 gaa----------actgagggacagacaagacaagtaacttgGATGGAGCCCAGGAGACAGGCCCAGAGTCCCTGCTCTGCACACTGCACTGCTACTTCCACACATTCTCGGGTGCGATCTTTCTTCCTGTTTAGGAACAAGAGCCTGTGCCCCAGGAAGCAG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3816967 152 -   8455952 gaa----------actgagggacagacaagacaagcaacttgGATGGAGCCCAGGAGACAGGCCCAG-GTCCCTGCTCTGCACACTGCACTGCTACTTCCACACATTCTCGGGTGCGATCTTTCTTCCTCTTTAGGAACAAGAGCCTGTGCCCCAGGAAGCAG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272374 163 +    297174 gaaacaggaacagactgagggacagacaagacaagcaacttgGATGGAGCCCAGGAGACAGGCCCAGGGTCCCTGCTCTGCACACTGTACTTCTACTTCCACACATTCTCAGGTGCCATCTTTCTTCCTCTTTAGGAACAACAGCCTGTGCCCCAGGAAAAAG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103761597 153 - 225584828 gaa----------actgagggacagacaagacaagcaacttgGATGGAGCCCAGGATAGAGGCCCAGGGTCCCTGCTCTGCCCACTGCACTACTACTTCCACACATTGTTGGGTGCGATCTTTCTTCCTCTTTAGGAACAAGAGCCTGTGCCCCAGGAAGCAG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211906821 146 + 227556264 gaa----------actgagggacagacaggacaagcaagttgcatgcagcccaggagacagactcagggttcCTGCTCTGCACACTGCACTACTACTTCCACACATCCTGGGGTGCGATCTTTC-------TGAGGAACAAAAGCCTGTGCCCGAGGAAGCAG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11414522 153 -  14060431 gaa----------actgaggtacagacaagacaagcaacttgGATGGAGTCCAGGATAGAGGCCCAGGGTCCCTGCTCTGCCCACTGCACTACTACTTCCACACATTGTCGGGTGCGATCTTTCTTCCTCTTTAGGAACAAGAGCCTGTACCCCAGGAAGCAG
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1024933 153 -   1280666 gaa----------actgagggacagacaagacaagcaacttgGATGGAACCCAGGATACAGGCCCAGGGTCCCTGCTCTGCCCACTGCACTGCTACTTCCACACATTGTCGGGTGTGATCTTTCTTCCTCTTTAGGAACAAGAGCCTGTGCACCAGGAAGCAG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             510114 152 -   1325925 gaa----------actgagggacagacaagacaagcaagttgGATGGAGCCCAGGATAGAGGCCCA-GGTCCCTGCTCTGCCCACTGCACTACTACTTCCACACATTGTTGGGTGCGATCTTTCTTCCTCTTTAGGAACAAGAGCCTGTGCCCCAGGAAGCAG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3748375 153 -   3775709 GAA----------ACTGAGGGACAGACAGGACAAGCTACTTGGATGGAGCCCAGATGACAGGCCCAGGGTTCCTGTTCTGCACACTGCACTGCTACTTCCACATATCCTTGGGTGGGAACTTTCTTCCTCTTTAGGAACAAAAGCCTGTTTCCCAGGAAGCAG
i colAng1.NW_012114988v1          I 4 C 0
s calJac3.chr18                     3659904 152 +  47448759 gaa----------actgaggcacagagaagataggccactGGGATGGAGACCAGGAGACTGGTCTGGGCTCCCTGCTCTGCACACAGCACTGCTACCTCCCCAATGTCTTACGTGCTATCTTTCTTCCTCTTCAGAAA-AAGAGCCTGTGCCCCAGGATGCAG
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8648616 133 -   9938236 gaa----------act--ggcacagagaagacaagCCTC-----CGGAGCCCAGGAGTCCG-CCCAGGGTGCCCGCTGTACACACCGC---------TCTGAACAGCCCTGGGTGCTCGCTCTGCTGCTCCCGGGGAA-AAGAGTCTGT--TCCAGGAAGCAG
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197963503 406 - 215897965 I
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=9100.000000
s hg38.chr1_KI270711v1_random         28381 1 +     42210 G
s panTro5.chr1                    208012767 1 - 228573443 G
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208146779 1 - 229774977 G
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3817119 1 -   8455952 G
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272537 1 +    297174 G
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103761750 1 - 225584828 G
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211906967 1 + 227556264 G
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11414675 1 -  14060431 G
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1025086 1 -   1280666 G
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             510266 1 -   1325925 G
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197963909 1 - 215897965 G
i nasLar1.chr1                    I 406 N 0
s colAng1.NW_012114988v1            3748528 1 -   3775709 G
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3660056 1 +  47448759 G
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8648749 1 -   9938236 G
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=68782.000000
s hg38.chr1_KI270711v1_random         28382 17 +     42210 ACTTCACTCTCACCAAG
s panTro5.chr1                    208012768 16 - 228573443 ACTTCCCTCTCACCG-G
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208146780 16 - 229774977 ACTTCCCTCTCACCG-G
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3817120 16 -   8455952 ACTTCACTCTCACCA-A
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272538 17 +    297174 ACTTCCCTCTCAACAGA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103761751 16 - 225584828 ACTT-CCTCTCACCAGG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211906968 17 + 227556264 ACTTCCCTCTCACCAGG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11414676 16 -  14060431 ACTT-CCTCTCACCAGG
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1025087 16 -   1280666 ACTT-CCTCTCACCAGG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             510267 16 -   1325925 ACTT-CCTCTCACCAGG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3748529 17 -   3775709 ACTTCCCTCACACCAGG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3660057 17 +  47448759 ACTTCCCTCTCCCCAGA
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8648750 17 -   9938236 ACTTCTTTCTCACCAGG
i otoGar3.GL873592                C 0 I 945
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=4246.000000
s hg38.chr1_KI270711v1_random         28399 1 +     42210 G
s panTro5.chr1                    208012784 1 - 228573443 G
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208146796 1 - 229774977 G
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3817136 1 -   8455952 G
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272555 1 +    297174 G
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103761767 1 - 225584828 G
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211906985 1 + 227556264 G
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11414692 1 -  14060431 G
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1025103 1 -   1280666 G
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             510283 1 -   1325925 G
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3748546 1 -   3775709 G
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3660074 1 +  47448759 T
i calJac3.chr18                   C 0 C 0
e otoGar3.GL873592                  8648767 945 -   9938236 I
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=31817.000000
s hg38.chr1_KI270711v1_random         28400 21 +     42210 TACTCTCTGCTTTTTATTTTT
s panTro5.chr1                    208012785 15 - 228573443 TACTCTCTGCTTTTC------
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208146797 15 - 229774977 TACTCTCTGCTTTTC------
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3817137 21 -   8455952 TACTCTCTGCTTTTTATTCTT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272556 16 +    297174 TACTCTCTACttttt-----t
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103761768 10 - 225584828 TACTCTCTGC-----------
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211906986 21 + 227556264 TACTCTCTGCtttttcttttc
i macFas5.chr1                    C 0 I 14
s macNem1.NW_012017688v1           11414693 10 -  14060431 TACTCTCTGC-----------
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1025104 11 -   1280666 TACTCTCTGCt----------
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             510284 21 -   1325925 TACTCTCTGCTTTTTTTTTTT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3748547 15 -   3775709 TATTCTCTTCCtttg------
i colAng1.NW_012114988v1          C 0 C 0
e otoGar3.GL873592                  8648767 945 -   9938236 I
e calJac3.chr18                     3660075  0 +  47448759 C
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674  0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=87.000000
s hg38.chr1_KI270711v1_random         28421 2 +     42210 At
s gorGor5.CYUI01015145v1            3817158 2 -   8455952 At
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272572 2 +    297174 aa
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s manLeu1.NW_012105087v1             510305 1 -   1325925 -T
i manLeu1.NW_012105087v1          C 0 I 1
e otoGar3.GL873592                  8648767 945 -   9938236 I
e calJac3.chr18                     3660075 0 +  47448759 C
e panPan2.chr1                    208146812 0 - 229774977 C
e panTro5.chr1                    208012800 0 - 228573443 C
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3748562 0 -   3775709 C
e cerAty1.NW_012001440v1            1826674 0 -   2461138 C
e macFas5.chr1                    211907007 14 + 227556264 I
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e rheMac8.chr1                    103761778 0 - 225584828 C
e ponAbe2.chr1                    107372468 5115 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1025115 0 -   1280666 C
e macNem1.NW_012017688v1           11414703 0 -  14060431 C

a score=1148974.000000
s hg38.chr1_KI270711v1_random         28423 310 +     42210 ------------------------------------------------------------ttttgtttatctttttgtttgtttgttttttgacgagtcttgccctgtcaccca-tgctggagtgcaacagtgcaatcttggctcactgcaacatctgcctgctgggttcaaaggattcttctgcctcagcctcccgattagtggtgattacagttgcccgccacgacgcccatctactttttgtatttttagtggagatggggtttctccatgttgcccaggctagtctcaaactcctcaactcgtgctctgcccgcctcagcctcccaaagtgctgagattacaggagtgagccacgttgcacggccCC
s panTro5.chr1                    208012800 283 - 228573443 ---------------------------------------------------------------------------------------TTTCAATgagtcttgccctgtcgccca-ggctggagtgcaatggcgtgttcttggctcactgcaacctctgcctcctgggtgcaaaggattctcctgcctcagcctcccgagtagctgggattacaggcgcccgccaccacgcccagccaatgtttgtatttttagaagagatggggtttctccatgttgcccaggccggtctcaaactcctgacctcgtgatccgctcgcctcagcctcccaaagtgctgggattacaggagtgagccaccgtgcatggccCC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208146812 283 - 229774977 ---------------------------------------------------------------------------------------TTTCAATgagtcttgccctgtcgccca-ggctggagtgcaatggcgtgttcttggctcactgcaacctctgcctcctgggtgcaaaggattctcctgcctcagcctcccgagtagctgggattacaggcgcccgccaccacgcccagccaatgtttgtatttttagaagagatggggtttctccatgttgcccaggctggtctcaaactcctgacctcgtgatccgctcgcctcagcctcccaaagtgctgggattacaggagtgagccaccgtgcatggccCC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3817160 299 -   8455952 ------------------------------------------------------------ttttatttattttttttttttt-----tttttacgagtcttgccctgtcgccca-ggctggagtgcaatggc--aatcttggctcactgcaacctctgcctcctgggttcaaaggattctcctgcctcagcct-ccgagtag-tgggattacag--gcccgccaccacgcccatctactttttgtatttttagtggagatggggtttctccatgttgcccaggctggtctcaaactcctgacctcgtgatctgcccgcctcagcctcccaaagtgctgggattacaggagtgagccaccatgcacggccCC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272574 299 +    297174 ------------------------------------------------------------atttatttatttattta----------ttttgacgagtcttgccttgtcgccca-ggctcaagtgcaatggtgtgatcttggctcattgcaacctctgcctcctaggttcaaaggattctcctgcctcagcctcccgagtagtggggattacaggcg-ccgccaccacgcacagctaatttttgaaatttttgtagagacggggtttctccatcttgcccaggctagtctcaaactcctgaccttgtgatctgcccaagtcagcctcccaaagtgctgggattacaggagtgagccacagtgcacggccCC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103761778 303 - 225584828 ------------------------------------------------------------ttttttttttttttttcct--------ccttgacaagtcttcccctgtcgcccagggctggagtgcaatggcgcgatcttggctcactgcaacctccgcctcctgggttcaaaagattctcctgcctcagactcccgagtagctgggattacaggtgcctcccaccatgcccagctaatttttgtattttcagtggagatgcggtttctccatgttgcccaggctggtctcaaactcctgacctcgtgatctgcccacctcagcctcccaaagtgctgggattacaggggtgagccactgtgcatggccCC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211907021 310 + 227556264 ctttttt----------------------------------------------------tttttttttttttttttttt--------ttttgacgagtcttgccctgtcaccca-ggctggagtgcaatggcgtgatcttggctcactgcaacctctgtctcctgggttcaaaggattctcctgcctcagcctcccgagtagctagaattacaggtgcccaccaccatgcccatgtaatttttctaattttagtagagacggggtctctccacattgcccaggatggaatcaaactcctgacctcgtgatccacccgcctcagcctcccaaagtgctgggattacaggactgagccaccttgcacggccCC
i macFas5.chr1                    I 14 C 0
s macNem1.NW_012017688v1           11414703 303 -  14060431 ------t----------------------------------------------------tttttatttatttatttgtt--------ttttgacgaatctt--cccgtcacccagggctggagtgcaatggcgtgatcttggctcactgcaacctctgcctcctgggttcaaaagattctcctaccacagaccccggagtagctgggattacaggcacctgccacaacgcccagctaatttttgtatttttagtggagatgcggtttctccatgttgcccaggctagtctcaaactcctgacctcgtgatctgcccgcctcagcctctcaaaatgctgggattacaggagtgagccactgtgcacagccCC
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1025115 304 -   1280666 -----------------------------------------------------------ttttttttttttttttccct--------ccttgacaagtcttcctctgtcgcccagggctggagtgcaatggcgcgatcttggctcactgcaacctctgcctcctgggttccaaaggttctcctgcctcagactcccgagtagctgggattacaggtgcctcctaccatgcccagctaatttttgtattttcagtggagacgcagtttctccatgttgcccaggctggtctcaaactcctgacctcgtgatctgcccgcctcagcctcccaaagtgctgggattacaggggtgagccactgtgcatggccCC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             510307 357 -   1325925 ------TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttttttttttttttttcct--------ccttgataagtcttcccctgtcgcccagggctggagtgcaatggcgcgatcttggctcactgcaacctctgcctcttgggttcaaaagattctcctgcctcagactcccgagtagctgggattacaggtgcctcccaccatgcccagctaatttttgtattttcagtggagacgcggtttctccatgttgcccaggctggtctcaaactcctgacctcgtgatctgcccacctcagcctcccaaagtgctgggattacaggggtgagccactgtgcatggccCC
i manLeu1.NW_012105087v1          I 1 C 0
s colAng1.NW_012114988v1            3748562 297 -   3775709 -----------------------------------------------------------------tttgtttgtttatt--------ttttgaggagtctggtcctgtcgccca-ggctggagtgcaatggcgtgatcttggctcactgcaacctctgcctcctgggttcaaaggattctcctgcctcagcctcccaagtagctgggattacacgtgcccaccaccacgctcagctaatttttgtaattttcgtagagacagagtttctccatgttgcccaggctggtctcaaactcctgaccttgtgatccagctgcctcagcctcccaaagtgctgggataacaagactgagccaccTTCCACAGCCCC
i colAng1.NW_012114988v1          C 0 C 0
e otoGar3.GL873592                  8648767 945 -   9938236 I
e calJac3.chr18                     3660075   0 +  47448759 C
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e cebCap1.NW_016108146v1             195749 78538 +    407294 I
e saiBol1.JH378257                  2810280 1066 -   4070394 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=1262027.000000
s hg38.chr1_KI270711v1_random         28733 199 +     42210 TACTCCCTGCTCTTGATGGTGTCACTTATAGATAGCACAGGTTCTATTAGGAGCAGACTCCTCTTGAAGTCCCTCAGAGCAGGTACTGGCTACTATCACCAAGTTCCCCTCAGAGTCACTAGAACAGAGCTTTGCCTGTTGGGCCTCAACAGAAACTTGAACTGAATAAAAGTTCACTAGTCTCAGACATTTAGAACAA
s panTro5.chr1                    208013083 199 - 228573443 TACTCCCTGCTCTTGATGCTGTCACTTACAGATACCACAGGTTCTATTAGGAGCAGACTCCTCTTGAAGCCCCTCAGAGCGGGTACTGTGTACTATCACCAAGTTTTCCTCAGGGTCCCCAGAACAGAGCTTTTCCTATTGGGCCTCAACAGAAGCTTGAACACAATAAGGGTTCACTAGTCCCACACATTTAGAACAA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208147095 199 - 229774977 TACTCCCTGCTCTTGATGCTGTCACTTACAGATACCACAGGTTCTATTAGGAGCAGACTCCTCTTGAAGCCCCTCAGAGCGGGTACTGTGTACTATCACCAAGTTTTCCTCAGGGTCCCCAGAACAGAGCTTTTCCTATTGGGCCTCAACAGAAGCTTGAACACAATAAGGGTTCACTAGTCCCACACATTTAGAACAA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3817459 193 -   8455952 TACTCCCTGCTCTTGATGCTGTCACTTATAGATAGCACAGGTTCTATTAGGAGCAGACTCCTCTTGAAGCCCCTCAGAGCAGGTACTG-GTACTATCACCAAGTTTCCCTCAGAGTCAC-AGAACAGAGCTTTGCCTATTGGGCCTCAACAGAAACTTGAACT-AATAA--GTTCACTAGTC-CAGACATTTAGAACAA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272873 198 +    297174 TACTCCCTGCACTTGATGCTGTTACTTATATATACCACATGTTCTATTAGGAGCAGACTGCTCTTGAAGTCCTTCAGAGTGGGTACTGGGTACTATCACCAAGTTTCCCTCAGGGTCACTAGAACAGAGCTTTGCCTATTGGGCCTCAACAGAAGCTTGAACTGAATAAAAGTTCACTTGTC-CAGACATTTAGAACAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103762081 199 - 225584828 TACTCCCTGCTCTTGATGCTGTCACTTACAGATACCACAGGTTCTATTAGGAGCAGACTCCTCTTGAAGCTCCTCAGAGCGGGTACTGGGTACTATCACAAAGTTTCCCTCAGGGTCACTAGAACAGAGCTTTGACTATTGGGTCTCAACAGAATCTTGTACTGAATAAAAGTTCACTAGTCCCAGACATTTAAAACAA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211907331 199 + 227556264 TACTCCCTGCTCTTGATGCTGTCGGTTATAGATACCACAGGTTCTATTAGAAGCAGACTCCTCTTGAGGCCCCACATAGCGGGTACTGTGTACTATCACCAAATTTCCCTCAGGGTCCCTAGAACAGAGCTTTGCCTATTGGGCCTCAACAGAAGCTTGAACTGAATAAAAGTTCACTAGTCCCAGACATTTAGAACAA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11415006 199 -  14060431 TACTCCCTGCTCTTGATGCTGTCACTTACAGATACCACAGGTTCTATTAGGAGCAGACACCTCTTGAAGTTCCTCAGAGCGGGTACTGGGTACTATCACCAACTTTCCCTCAGGGTCCCTAGAACAGAGCTTTGCCTTTTGGGCCTCAACAGAAGCTTGAACTGAATAAAAGTTCACTAGTCCCAGACATTTAGAACAA
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1025419 199 -   1280666 TACTCCCTGCTCTTGATGCTGTCACTTATAGATACCACAGGTTCTATTAGGAGCAGACACCTCTTGAAGCTCCTCAGAGCGGGTACTGGGTACTATCACAAAGTTTCCCTCAGGGTCACTAGAACAGAGCTTTGACTATTGGGTCTCAACAGAAGCTCGAACTGAATAAAAGTTCACTGGTCCCAGACATTTAGAACAA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             510664 199 -   1325925 TACTCCCTGCTCTTGATGCTGTCACTTACAGATACCACAGGTTCTATTAGGAGCAGACACCTCTTGAAGCTCCTCAGAGCGGGTACTGGGTACTATCACAAAGTTTCCCTCAGGGTCACTAGAACAGAGCTTTGACTATTGGGTCTCAACAGAATCTTGTACTGAATAAAAGTTCACTAGTCCCAGACATTTAGAACAA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3748859 199 -   3775709 TACTCCCTGCTCTTGATGCTGTCGGTTATAGATACCACAGGTTCTATTAGGAGCAGACTCCTCTTGACGCCCCTCACAGCGGGTACTGTGTACTATCACCAAATTTCCCTCAGGGTCCCTAGAACAGAGCTTTGCCTATTGGGCCTCAACAGAAGCTTGAACTGAATAAAAGTTCACTAGCCCGAGACATTTAGAACAA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3660075 198 +  47448759 TACTCCCTGCTCTTCATGCTGTCACTTATGGATGCCACTATTACTATTAGGAGCAGTCTCCTCTTTAAGCTCCTTAGAGCAGGTACTGTATACTGTTCCCACATTTCCCCTCGGGTTTTCTGAAGAGAGATTTACCTATTGGGCCTC-AAAGAAGCTTAAACGGAATGGTAGTTCATTAGTTCCAGGCATTTAGGCCAA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2811346 199 -   4070394 TACTCTCTGCTCTTCATGGTGCCACATACACATATCACAGGTTCTATTAGGAGCAGGGTCCCCTACAAGCTCCTCACAGCGGGTACTGTGTGCTATCATTGGGTTTCCACCAGTGTCTCCAGAACACATTTTTGCCTACTGGGCCTCTGCAGAAACCAGAACAAAATGCAAGTTCAGTAGCCTCAGACATTTAGACCAA
i saiBol1.JH378257                I 1066 C 0
s cebCap1.NW_016108146v1             274287 196 +    407294 TACTCCCTGCTCTTGATGGTGCCACTTACACATACCACAGGTTCTATTAGGAGCAGGGTTCCTTTCAAGC-CCTCACAGCAGGTACTGTGTGCTATCACTGTGTTTCC-CCAGTGTCCCCAGAACACAGCTTTGCTTACTGGGCCTCAGCAGAAACTGGAGCCAAATGAAAGTTAAG-AGCCCCAGACATTTAGACCAA
i cebCap1.NW_016108146v1          I 78538 C 0
e otoGar3.GL873592                  8648767 945 -   9938236 I
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=791277.000000
s hg38.chr1_KI270711v1_random         28932 104 +     42210 CAGACTAGATGTTATTTGTCTGCAGGA-----------------------TCTTATATGGTACAGAGAGGATTCTTGAAAACATGATTGAGCCTCT---TG--GAGAAAA-CAGGTCGTTCTGTGTCTGTGTT
s panTro5.chr1                    208013282 104 - 228573443 CAGACTAGATGTTATTTGTCTGCCGGA-----------------------TCTTATATGGTACAGAGAGGATTCTTGAAAACAGGATTTAGCCTCT---TG--GAGAAAA-CAGGTCGTTCTGTGCCTGTGTC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208147294 104 - 229774977 CAGACTAGATGTTATTTGTCTGCCGGA-----------------------TCTTATATGGTACAGAGAGGATTCTTGAAAACATGATTTAGCCTCT---TG--GAGAAAA-CAGGTCGTTCTGTGCCTGTGTC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3817652 101 -   8455952 CAGACTAGATGTTATTTGTCTGC-GGA-----------------------TCTTATATGGTACAGAGAGGATTCTTGAAAACACGATT-AGCCTCT---TG--GAGAAAA-CAGGT-GTTCTGTGCCTGTGTC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    273071 104 +    297174 CAGACTAGATGTTATTTGTCTGCAGGA-----------------------TCTTATATAGTACAGAGAGGATTCTTGAAAACATGATTTCACCTCT---TG--GAGAAAA-CAGGTCATTCTGTGCCTGTGTC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103762280 104 - 225584828 CAGACTAGATGTTATTTGTCTGCAGGA-----------------------TCTTATATGGTACAGAGAGGATTCTTGAAAACATGATTGAGCCTCT---TG--GAGAAAA-CAGGTCGTTCTGTGCCTGTGTC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211907530 104 + 227556264 CAGACTAGATGTCATTTGTCTGCCGGA-----------------------TCTTATATGGTACAGAGAGGATTCTTGAAAACATGATTTAGCCTCT---TG--GAGAAAA-CAGGTGGTTCCGTGCCTGTGTC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11415205 104 -  14060431 CAGACTAGATGTTACTTGTCTGCAGGA-----------------------TCTTATATGGTACAGACAGGATTCTTGAAAACATGATTGAGCCTCT---TG--GAGAAAA-CAGGTCGTTCTGTGCCTGTGTC
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1025618 104 -   1280666 CAGACTAGATGTTATTTGTCTGCAGGA-----------------------TCTTATATGGTACAGAGAGGATTCTTGAAAACATGATTTAGCCTCT---TG--GAGAAAA-CAGGTCGTTCTCTGCCTGTGTC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             510863 104 -   1325925 CAGACTAGATGTTATTTGTCTGCAGGA-----------------------TCTTATATGGTACAGAGAGGATTCTTGAAAACATGATGAAGCCTCT---TG--GAGAAAA-CAGGTCGTTCTGTGCCTGTGTC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3749058 104 -   3775709 CAGAATAGATGTTATTTGTCTGCCGGA-----------------------TCTTATATGGTACAGAGAGGATTCTTGAAAACATGATTTAGCCTCT---TG--GAGAAAA-CAGGTCATTCTGTGCCTGTGTC
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3660273 107 +  47448759 CAGACTAGATGTTATTTGTCTTCAGGA-----------------------TCTTCTAGCGTACAGAGAGCATTCTCATAAACATGATTGAGCATCT---TGCTGAGAAAAGCAAGTGGTTCTGTGCCTGTGTC
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2811545 107 -   4070394 CAGACTGGATGCTACTTGTCTGCAGGA-----------------------TCTTATACAGTACAGAGAGAATTCCTGTAAACATGATTTAGCCTTT---TGCTGAGAAAAACAGGTGGTTCCATGCCTGTGTC
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             274483 107 +    407294 CAGACTAGATGTTACTTGTCTGCAGGA-----------------------TCTTATATGGTACAGAGGGGATTCCTGTAAACATGATTTAGCCTTT---TGCTGAGAAAAACAAGTGGTTCTGTGCCTGTGTC
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8649712 130 -   9938236 CAGACTAAATGCTACTTGTCTGCAGGATTTTTTTTTTTTTTTTGGTAGAGTCTTACGTGATACAGAGAGGATCCTCGTAAAAACTGTTTAACCTGTTTCTG--ATGAAAA-CAGGAAGTTCAGTATCTACacc
i otoGar3.GL873592                I 945 C 0
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cerAty1.NW_012001440v1            1826674   0 -   2461138 C
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=1284165.000000
s hg38.chr1_KI270711v1_random         29036 185 +     42210 AG-AAATCAATAACTGTGAGTTTAACTCTAGTCCCACCCC-CACCTGATTGCAAACATGGAAA-GTTGCTAAATACTTTG-G---------------------TACCTCTG-TCTTCCAACTTTAACAAAAT---GTTAAAATACCCATTTCTGTTTTCCTAGAAGTACAGGAAGGATGAAATTATTTTTGATGG----------------------AGAGAGCATTTAGTGTCTC
s panTro5.chr1                    208013386 185 - 228573443 CC-AAATGAATAACTGCGAGTTTAACTCTAGGCCCACCCC-CACCTGACTGCAAACATGGAAA-CTTGCTAAATACTTTG-G---------------------TACCTCTG-ACTTCCAAATTTAACAAAAT---GTGAAAATGCCCATTTCTATTTTCCTAGAAGTATGGGAGGGTTGAACTTATTTTTGATGG----------------------AGAGAGCATTTAGTTTCTC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208147398 185 - 229774977 CC-AAATGAATAACTGCGAGTTTAACTCTAGGCCTACCCC-CACCTGACTGCAAACATGGAAA-CTTGCTAAATACTTTG-G---------------------TACCTCTG-ACTTCCAAATTTAACAAAAT---GTGAAAATGCCCATTTCTATTTTCCTAGAAGTATGGGAGGGTTGAACTTATTTTTGATGG----------------------AGAGAGCATTTAGTTTCTC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3817753 177 -   8455952 ---AAAATAATAACTGC-AGTTTAACTCTAG-CCCACCCC-CACCTGATTGCAAACATGGAAA--TTGCTAAATACTTTG-G---------------------TACCTCTG-TCTTCCAACTTTAACAAAAT---GTGAAAATGCCCATTTCTATTTTCCTAGAAGTAC-GGAAGGATGAACTTATTTTT-ATGG----------------------AGAGAGCATTTAGT-TCTC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    273175 185 +    297174 GG-AAATCAGTAACTGGGATTTTAACTCTAGTCTCACCCC-CAGCTGACTGCAAACATGGAAA-GTTGCTAAATACTTTG-G---------------------TACCTCTG-TCTTCCAAATTTAACAAAAT---GTTAAAATACCCATTTCTAGTTTATTAGATGTATGGGAAGGATGAAATTATTTTTGATGG----------------------AGACAGCATTTAGTTTCTT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103762384 186 - 225584828 AGAAAATCAACAATTGGGATTTGAACTCTAGTCCCACCCC-CATCTGACTGCAAACATGGAAA-GTTGCTAAATACTTTG-G---------------------TACCTCTG-TCTTCCAACCTTAACAAAAT---GTTAAAATACCCATTTCTGTTTTCCTAGAAGTATGGGAAGGAAGAAATTATTTTTGATGG----------------------AGAGAGCATTTAGTTTCTC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211907634 185 + 227556264 CG-AAATCAATAACTGCTATTCTACCTCTAGGTCCATCCC-CACCTGACGGCAAACAGGGAAA-GTTTCAAAATACTTTG-G---------------------TACCTCTG-TCTTCTAACATTAACAAAAT---GTGAAAATACCCATTTCTATTTTCCTAGAAGTAAGGGAAGGATTAAATTATTTTTGATAG----------------------AGAGAGAATTCAGTTTCTC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11415309 186 -  14060431 AGAAAATCAACAACTGGGATTTGAACTCCAGTCCCACCCC-CATCTGACTGCAAACATGGAAA-GTTACTAAATACTTTG-G---------------------TACCTCTG-TCTTCCAACTTTAACAAAAT---GTTAAAATACCCATTTCTGTTTTCTTACAAGTACAGGGAGGAAAAAATTATTTTTGATGG----------------------AGAGAGCATTTAGTTCCTC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1826674 185 -   2461138 AG-AAAGTAACAACTGGGATTTGAACTCTAATCCCACCCC-CATCTGACTGCAAACATGGAAA-GTTGCTAAATACTTTG-G---------------------CACCTCTG-TCTTCCAACTTTAACAAAAT---GTTAAAATACCCATTTCTGTTTTCCTAGAAGTATGGGAAGGAAGAAATTATTTTTGATGG----------------------AGAGAGCATTTAGTTTCTC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1025722 185 -   1280666 AG-AAAGTAACAACTGGGATTTGAACTCTAGTCCCACTCC-CATCTGACTGCAAACACGGAAA-GTTGCTAAATACTTTG-G---------------------TACCTCTG-TCTTCCAACCTTAACAAAAT---GTTAAAATACCCATTTCTGTTTTCCTAGAAGTATGGGAAGGAAGAAATTATTTTTGATGG----------------------AGAGAGCATTTAGTTTCTC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             510967 185 -   1325925 AG-AAAGTAACAACTGGGATTTGAACTCTAGTCCCACCCC-CATCTGACTGCAAACATGGAAA-GTTGCTAAATACTTTG-G---------------------TACCTCTG-TCTTCCAACCTTAACAAAAT---GTTAAAATACCCATTTCTGTTTTCCTAGAAGTATGGGAAGGAAGAAATTATTTTTGATGG----------------------AGAGAGCATTTAGTTTCTC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3749162 205 -   3775709 --TGAAACCATAACTGAGATTTTAACTCTAGGTCCATCCC-CACCTGACTGCAAACATGGAAA-GTTTCAAAATACTTTG-GTACCTCTGTCTTCCAATTTTATACCTCTG-TCTTCCAATTTTAACAAAAT---GTGAAAATACCCATTTCTAATTTCGTAGAAGTACGGAAAGGATTACATTACTTCTGATGG----------------------AGAGAGAATTCAGTTTCTC
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3660380 189 +  47448759 AG-AAGTCAATAAGTAGGATTTTAACTCTAGTCCCACCTCACATCGGACTGCTAACATGGAAAAGTTGCTAAATACATTGTG-----------------------CCTCTG-TTTTCCATCCTTAACACAATGAAGTTAAAATACACATTTCTGTTTTTCTATAACTAAGGAAAGGATGAAATTAATTTTGATGA----------------------AGAGACTGTTCAGTATCTC
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2811652 181 -   4070394 AG-AAATCAATGGCTGGGATTGTAACCCCAGTCCCTCAAC-CACCCTACTGCAGACATGGAACAGTGGCTAAATACTTTG-A-----------------------CCTATG-TCTTCCATCTTTAACTAAGT---GTTAAAACACCCATTGCTG-TTTTCTACAAGTATGGGAAGGATGAAATTAATTTTGATGA----------------------AGAGACAGTT-AGTTTCT-
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             274590 183 +    407294 AG-AAATCAATAGCTGGCATTGTAACCCTAGTCCCACACC-CACCTTACTGCAGACGTGGAAATGTTGCTAAATACTTTG-T-----------------------CCTCTG-TCTTCCATCTTTAACTAAAT---GTTGAAATACCCATTGCTA-TTCTCTACAAGTATGGGAAGAATGAAACTAATTTTGATGA----------------------AGAGAATGGTTAGTTTCTC
i cebCap1.NW_016108146v1          C 0 I 308
s otoGar3.GL873592                  8649842 212 -   9938236 ag-gaatcaataaatgggattttaacccaagccccagcctacacttcactgcaaacttggaaaagttgctaaactctttg-----------------------tgcctcagtttttccgtcgtcagcaaaatgaggttaaaatacccactttaaccattccagaagTACAGTCAAGATGGCATTTATTTTGACAATAGGAAGAGGACAATCGAGTCTAGAGAATGCTTCTTTTCTC
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=2046522.000000
s hg38.chr1_KI270711v1_random         29221 311 +     42210 AGAGAGAAGACAGGA----CATCATTCATCACTTTCATGATGGTGAGCCTATAGATCTTACTGTATTTCTTCTGTCGGTTGGCCAGGAAGCCGGC-----CAGTTGAGTTACAAAACATTTCTCTTTGAGGTTTCTGAACTGCTGTTTGTTCTCTGCCAGCTGGGGGCG-CAATTTCTCGTTGATTTCTAAAATGTTCGTCTCTGC-CTTCTCGCTGGACCAAGGGCCGGCTGATACCACCATGCTGACGTTTGTGGCAGAAGAGGTGGAGCCAGGGACTGGGGAGAAGAAACCCAAACATA-TGATGGGTTAAAAACTGGTG
s panTro5.chr1                    208013571 311 - 228573443 AGTGAGAAGACAGGA----CATCATTCATCACTTTTGTGATGGTGAGCCTATAGAACTTACCATAATTATTCTGCCGGTTGGCCAGGAAGTAGGC-----CACTTGAGTTACAAGACATTTCTGTTTGAGGTTTCTGAACTGCTGTTTGTTCTCTGCCAGCTGGGGGCG-CGATTTCTTGTTGATTTCTAGAATGTTCATCTCTGA-CTTCTGACTGGACCAAGGGCCGGCAGATACCACCATGCTGACGTTTGTGGCAGAAGAGGTGGGGCCAGGGACTGGGGAGAAGACACCCAAACACA-CGATGGGTTAAAAACTGGTG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208147583 311 - 229774977 AGTGAGAAGACAGGA----CATCATTCATCACTTTTGTGATGGTGAGCCTATAGAACTTACCATAATTATTCTGCCGGTTGGCCAGGAAGTAGGC-----CACTTGAGTTACAAGACATTTCTGTTTGAGGTTTCTGAACTGCTGTTTGTTCTCTGCCAGCTGGGGGCG-CGATTTCTTGTTGATTTCTAGAATGTTCATCTCTGA-CTTCTGACTGGACCAAGGGCCGGCAGATACCACCATGCTGACGTTTGTGGCAGAAGAGGTGGGGCCAGGGACTGGGGAGAAGACACCCAAACACA-CGATGGGTTAAAAACTGGTG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3817930 296 -   8455952 AGAGAGAAGACAGGA----CATCATTCATCACTTT-GTGATGGTGAGCCTATAGAACTTAC-GTATTTCTTCTGTC-CTTGGCCAGGAAGT-GGC-----CAGTTGAGTTACAA-ACATTTCT-CTTGAGG-TTCTGAACTGCTGTTTGTTCTCTGCCAGCTGGGGGCG-C-ATTTCTC-TTGATTTCTAGAATGTTCATCTCTG--CTTCTG-CTGGA-CAAGGGCCGGC-GATACCACCATGCTGACGTTTGTGGCAGAAGAGGTGGGGCCAGGGACTGGGGAGAAGACA-GCAAACACA--GATGGGTTAAAAACTGGTG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    273360 311 +    297174 AGAGAGAAGATAGGA----CATCATTCATCACTTTTGTGATGGTGAGCCTGTAGAACTTGTGGTATTTGTTCTGCTGGTTGACCAGGAAGTAGGC-----CACTTGAGTTACAAGAAATTTCTCTTTGCTGTTTCTGAACTGCTGTTTGTTCTCTGCCAGCTGGGGGTG-CAATTTCTCATTGATTTCTAGAATGCTCTTTTTTGC-CTTCTCACTGGACCAAGGGCTGGCAGGTACCACCATGCTGACGTTTGTGGCAGAAGAGGTGGAGCCAAGGACTGGGGAGAAGAAACCCAAGCACA-TGATGGGTTAAAAACTGGTG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103762570 316 - 225584828 AGAGGGAAGACAGGA----CATCTTTCATCACTTTCGTGATGGTGAGCCTATAGATCTTACTGTATTTGTTCTGCCTGTTGACCAGGAAGCAGGCCACTTCACTTGAGTTACAAGAAATTTCTCTTTGATGTTTCTGAACTGCTGTTTCTTCTCTGCCAGCTGGGGGCG-CAATTTCTCGTTGATTTCTAGAATGCTCATCTCTGC-CTTCTCACTGGACCAAGGGGCGGCAGATACCACCATGCTGAGGTTTGTGGCAGAAGAGGTGGAGCCAGGGACTGGGGAGAAGAAATGCAAACACA-TGGTGGGTTAAAAACTGGTG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211907819 311 + 227556264 AGAGAGAAGACAGGA----CATCATTCATCACTTTTGTGATGGTGAGCCTATGGAACTTACTGTAACTGTTCTGCCCCTTGGTCAGAAAGTAGGC-----CACTTGAGTTACAAGATATTTCTCCTTGGTGTTTAGGAACTGATGTTTCTTCTCTGTCCGCTGGGGGCG-CAATTTCTCGTTGATTTCTAGAGTGTTCATCTCTGC-CTTCTTACTGGACCAAGGGCCCGCAAATACCACCATGCTGACGTGTGTGGCAGAAGACGTGGAGTCAGGGACTGGGGAGAAGAAACCCAAACACA-TGATGGGTTACAAACCGGTG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11415495 310 -  14060431 AAAGAGAAGACA-GA----TATCATTCATCACTTTCATGATGGTGAGCCTAGAGATTGTACTGTATTTGTTCTGCCAGTTGGCCAGGAAGCAGGC-----CACTTGAGTTACAATAAATTTCTCTTTTATGTTTCTGAACTGTTGTTTCTTCTCTGCCAGCTGGGGGCA-CAATTTCTCGTTGATTTCTAAAATGTTCATCTCTGC-CTTCTCACTGGACTAAGGGCCGGCAGACACCACCATGCTGACGTTTGTGGCAGAAGAGGTGGAGCCAGGGACTGGGGAGAAGAAACGCCAACACG-TGATGGGTTAAAAATTGGTG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1826859 316 -   2461138 AGAGGGAAGACAGGA----CATCATTCATCACTTTCGTGATGGTGAGCCTATAGATCTTACTGTATTTGTTCTGCCTGTTGACCAGGAAGCAGGCCACTTCACTTGAGTTACAAGAAATTTCTCTTTGATGTTTCTGAACTGCTGTTTCTTCTCTGCCAGCTGGGGGCG-CAATTTCTCGTTGATTTCTAGAATGCTCATCTCTGC-CTTCTCACTGGACCAAGGGCCGGCAGATACCACCATGCTGACGTTTGTGGCAGAAGAGGTGGAGCCAGGGACTGGGGAGAAGAAATGCAAACACA-TGGTGGGTTAAAAACTGGTG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1025907 316 -   1280666 AGAGGGAAGACAGGA----CATCATTCATCACTTTCGTGATGGTGAGCCTATAGATCTTACTGTATTTGTTCTGCCTGTTGACCAGGAAGCAGGCCACTTCACTTGAGTTACAAGAAATTTCTCTTTGATGTTTCTGAACTGCTGTTTCTTCTCTGCCAGCTGGGGGCG-CAGTTTCTCGTTGATTTCTAGAATGCTCATCTCTGC-CTTCTCACTGGACCAAGGGCCGGCAGATACCACCATGCTGAGGTTTGTGGCAGAAGAGGTGGAGCCAGGGACTGGGGAGAAGAAATGCAAACACA-TGGTGGGTTAAAAACTGGTG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             511152 316 -   1325925 AGAGGGAAGACAGGA----CATCATTCATCACTTTCGTGATGGTGAGCCTATAGATCTTACTGTATTTGTTCTGCCTGTTGACCAGGAAGCAGGCCACTTCACTTGAGTTACAAGAAATTTCTCTTTGATGTTTCTGAACTGCTGTTTCTTCTCTGCCAGCGGGGGGCG-CAATTTCTCGTTGATTTCTAGAATGCTCATCTCTGC-CTTCTCACTGGACCAAGGGCCGGCAGATACCACCATGCTGAGGTTTGTGGCAGAAGAGGTGGAGCCAGGGACTGGGGAGAAGAAATGCAAACACA-TGGTGGGTTAAAAACTGGTG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3749367 315 -   3775709 AGAGAGAAGACAGGACATCCATCATTCATCACTTTCGTGATGGTGAGCCTATGGAACTTACTGTAAGTGTTCTGCCCCTTGGCCAGAAAGTAGGC-----CACTTGAGTTACAAGAAATTTCTCTTTGGTGTTTATGAACTGATGTTTGTTCTCCGTCCGCTGGGGGTG-CAATTTCTCGTTGATTTCTAGAGTGTTCATCTCTGC-CTTCTTACTGGACCAAGGGCCCAGAGATACCACCATGCTGACATGTGTGGCAGAAGACGTGGAGTCAGGGACTGGGGAGAAGAAACCCAAACACA-TGATGGGTTAATAACTGGTG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3660569 314 +  47448759 AGAGAGAAGACAGGT----GCTTATTCATCACTTTCATGATGTTGAATCTATAAAACCTACCATATTTCTTCAGCTGCTTGGCCAGAGAGCAGGC--AGTAGCTCGACTTATAAGAAATTTCTCTTTGAGGTCTTCAAACTGCTGTTGGCTCTCTGCCAGCTGGTAGCA-CAATTCCTGATAGATTTCTAGGATGATCATCTCTGC-CCTGTCATGGAACAAATGTGTGGCAGTTACCACCATGCTGATGTTTGTGGCAGGAGATTTCACACAGGGGATAGGGGAGAAGGAACCCAAGCACA-TGATGGATCAAAAACTAGTG
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2811833 309 -   4070394 AGAGACAAGATAGGA----CATCACTCATCAGTTTCATGGTGGTGAACCTATAGAACTTACTGTATGTCTTCAGCTGGCAGTTACGGAAGTAGGC-----CACCTGGCTCATAAGAAGTCTGTATTTGCTGTCTCTGAAATTCGGTTTGGTCTCTTCCTGCTGGGAGTAGGAATTGTCGAT-GGTATGTGGAAAGTTCACCTCGGTGGTTGTCGTGGAACAAGT-TCTGACAGGTGTCGCCATGCTGACATTTGGGGCACCACAGCTAGAGCCAGGGACTGAGGAAAAGAAATCCAAACACA-TGACGGGTTAAAAACTG--G
i saiBol1.JH378257                C 0 C 0
s otoGar3.GL873592                  8650054 311 -   9938236 AGAGAGAAGAC--------ATTCAGCCACCACTTAGAGGCCAGGGAACCCACAGAACTTACTGTATTTCTGCAGCTGGTTGCCCAGGAAGGAGGC--AGCAGCTTCAGAGGTGAGCACTTTGTCCCCGCGGTCCCGGAGCTGCTGTTGGCTGTCTGCCGGCTGACAGCG-CAATTCCTTGTTGATTTCCAGGCTGTCCATCTCTGC-CCTCTGACTGGACAAAGGGCTGAGAGCTCCAGCCACTCTGACATGTGTGGCAGAAGAGGAACAGCCAGGGACTAGCGAGAAGAAACCCAGACACGCTGGCGGGTGAAAAACAAATG
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cebCap1.NW_016108146v1             274773 308 +    407294 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=293654.000000
s hg38.chr1_KI270711v1_random         29532 30 +     42210 AAATCAAATAGGTTTCATCAGGACTGAGGG
s panTro5.chr1                    208013882 30 - 228573443 AAATCAAATAGGTTTAATCAGGACTGAGGG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208147894 30 - 229774977 AAATCAAATAGATTTAATCAGGACTGAGAG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3818226 30 -   8455952 AAATCAAATAGGTTTAATGAGGACTGAGGG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    273671 30 +    297174 AAATCCAATACGTTTAATCAGGACTGAGGG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103762886 30 - 225584828 AAATCAAATAGGTTTAGTCAGGACTGAGGG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211908130 30 + 227556264 AAATCAAATAGGTTGAATCAGGACTGAGGG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11415805 30 -  14060431 AAATCAAATAGGTTTAGTCAGGACTGAGGG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1827175 30 -   2461138 AAACCAAATAGGTTTAATCAGGACTGAGGG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026223 30 -   1280666 AAATCAAATAGGTTTAATCAGGACTGAGGG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             511468 30 -   1325925 AAACCAAATAGTTTTAATCAGGACTGAGGG
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3749682 30 -   3775709 AAATCAAATAGGTTGAATCAGGACTGAGGG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3660883 30 +  47448759 AAATCAACTAGGTTTAGTCAGGACTGAGGG
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2812142 30 -   4070394 AAATCAAATAGGTTTAGTCAGGACTGGGGG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             275081 30 +    407294 AAATCAAATAGGTTTAATCAGGACTGGGGG
i cebCap1.NW_016108146v1          I 308 C 0
s otoGar3.GL873592                  8650365 30 -   9938236 AAATCAAATAGGTTTCATCAGGACCGAGGG
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=1180452.000000
s hg38.chr1_KI270711v1_random         29562 164 +     42210 ATGTCAGTAACTGAAATTCTTAACTTACTGTTGTGAAAAATGTGATCACT-CCCCACAGC--ACTTTAGGTTCCTTCACCACA--------------------AAAACAAGGTTCGAGGTGCCTGAACTCAGAGCTGAAAG----CACTGCCAGTAGCTCAGACTCTGATAAGAGTGAGGTAGACTGTGGC
s panTro5.chr1                    208013912 154 - 228573443 ATGTCAGTAACTGAAATTCTTAACTTACTGTTGAGAAAAATGTGATCAGT-CCCCGCAGC--ACTTTAGGATCCTTAACGACA--------------------AAAACAATGTTCGAGGTGCCTGAACTCAGAGCTGAAGG----CACTGCCAATAGCTCAGTCTCCGACAAGAGTGA----------GGC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208147924 154 - 229774977 ATGTCAGTAACTGAAATTCTTAACTTACTGTTGAGAAAAATGTGATCAGT-CCCCGCAGC--ACTTTAGGATCCTTAACGACA--------------------AAAACAATGTTCGAGGTGCCTGAACTCAGAGCTGAAGG----CACTGCCAATAGCTCAGTCTCCGACAAGAGTGA----------GGC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3818256 155 -   8455952 ATGTCAGTAACTGAAATTCTTAACTTACTGTTGAGAAAAATGTGATCA-T-CCCCACAGC--ACTTTAGGATCCTTCACGACA--------------------AAAACAAGGTTCGAGGTGCCTGAACTCAGAGCTGAAAG----CACTGCCA-TAGCTCAA-CTCTGA-AAGAGTGAGGAGT-----GGC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    273701 168 +    297174 ATGTCAGTAACTGAAATTCTTAACTTACTATTGAGAAAAATGTGATCACT-CCCCACAGC--ACTGTAGGATCCTTGACCACA--------------------AAAACAAGATTTGAGGTGCCTGAACTCAGAGCTGAAGGCACTCACTACCAGTAGCTCAGACTCTGACAAGAGTAAGGAAGATTGTGGC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103762916 164 - 225584828 ATGTCAGTAACTGAAATTCTTAACTTACTGTTGAGAAAAACATGATCACT-CCCCACGGC--AATTTAGGATCCTTAACCACA--------------------AAAACAAGGTTTGAGGTGTCTGAGCTCAGAGCTGAAGG----CACTGCCAGTGGCTCAGAGTCTGACAAGAGTGAGGAAGATTGTCAC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211908160 163 + 227556264 ATGGCAGTAACTGAAATTCTTAACTTACTGTTGAGAAAAACGAGATCAGT-CCCCACAGC--ACTTTAGGATCCTTAACCACA--------------------AAAACAAGGTTCGAGGTGTCTGAGTTCAGAGCTA-AGG----CACTGCCAGTCGCTCAGAGTCTCACAAGAGTGAGGAAGATTGTGGC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11415835 164 -  14060431 ATGTCAGTAACTGAAATTCTTAACCTACTGTTGAGAGAAATGTGATCACT-CCCCACAAC--ACTTTAGGATCCTTAACCACA--------------------AAAATAAGGTTCAAGGTGCCTGAGCTCAGAGCTGCAGG----CACTGCCAGTGGCTCAGAGTCTGACAAGAGTGAGGAAGACTGTCGC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1827205 164 -   2461138 ATGTCAGTAACTGAAATTCTTAACTTACTGTTGAGAAAAACATGATCACT-CCCTACAGT--AATTTAGGATCCTTAACCACA--------------------AAAACAAGGTTTGAGGTGTCTGAGCTCAGAGCTGCAGG----CACTGCCAGTGGCTCAGAGTCTGACAAGAGTGAGGAAGATTGTCGC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026253 164 -   1280666 ATGTCAGTAACTGAAATTCTTAACTTACTGTTGAGAAAAACGTGATCACT-CCCCACAGC--ACTTTAGGATCCTTAACCACA--------------------AAAACAAGGTTTGAGGTGTCTGAGCTCAGAGCTGAAGG----CACTGCCAGTGGCTCAGAGTCTGACAAGAGTGAGGAAGATTGTCGC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             511498 164 -   1325925 ATGTCAGTAACTGAAATTCTTAACTTACTGTTGAGAAAACCATGATCACT-CCCCACAGT--AATTTAGGATCCTTAACCACA--------------------AAAACAAGGTTTGAGGTGTCTGAGCTCAGAGCTGAAGG----CACTGCCAGTGGCTCAGAGTCTGACAAGAGTGAGGAAGATTGTCAC
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3749712 163 -   3775709 ATGTCAGTAACTGAAATTCTTAACTTACTGTTGAGAAAAACGAGACCAGT-CCCCACAGC--ACTTTAGGATCCTTAACCACA--------------------AAAACAAGGTTCGAGGTGTCTGAGTTCAGAGCTA-AGG----CACTGCCAGTCGCTCAGAGTCTCACAAGAGTGAGGAAGATTGTGGC
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3660913 114 +  47448759 ATGACAACAGCTGGAATTGTTGACTTATGGTTGTGAAGAACTTGATCAATACCCCACAGC--ATTTTAGAGTCCTTAATAGCA--------------------AAAAAATAATTTAGGATGCT--------GAGC------------------------------------------TCAGAGCCA-----
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2812172 160 -   4070394 ATGTCAAGAACTCAACTTCCTAACTTACTTTTGAGAAAAACTTGAT-----CCTCACAGC--ACTTTAGGGTCCTTAACCGCA--------------------AAAACAAGGTTCACAATGCTTCAGCTGGGAGCTGACGG----CACTGCCTGTGGCTCATACTCTGACAAGAGTGTCAGAGATAGTGGC
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             275111 160 +    407294 ATGTCAACAACTCAAATTCTTAACTTACTGTTGAGAAAAATTTGAT-----CCTCACAGC--ACTTTAGGGTCCTTAACCGCA--------------------AAAACAAGGTTCGCAATGCTTCAGCTGGGAGCTGAAGG----CACTGCCTGTAGCTCAGGTTCTGACAAGAGTGTGGGAGATAGTGGC
i cebCap1.NW_016108146v1          C 0 C 0
s eulMac1.LGHX01001203v1             252419 161 -   1582653 GGGACAAACACT---GTATTTAACTTACTGTTGGGAAAACCTTGATCAAT-ACCCGCAGA--ACTTGACAGTCCTTCACTGTA--------------------AAAACCAGGTTCAAGATGCGAGAGCTCAGAGCCGAAGG----CACCACCTGGAGCTCAAACTCCAACTAAAGTGAGGGAGGTAGAGCT
i eulMac1.LGHX01001203v1          N 0 N 0
s otoGar3.GL873592                  8650395 185 -   9938236 ATGACAAACACTCTGATTCTTAACTTATTGCTGAGAAAAACTTGACCAAC-ACCC-CAGAGTGCTTGACAGTCCCTAACTGAAAAAAGAAAAAGAGAAAGGGGAAAAAAAGGTTCAGTATGACGGCGATGAGAGCCGAGTC----CCCTGCCTATAGCTCAAACTCTGACTGAAGTGGGGGAGGTGGAGCT
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=2176771.000000
s hg38.chr1_KI270711v1_random         29726 273 +     42210 CAGCGTGCCAGGTAACCGTCTGCAGTTGCAATAACAGAATTAGAAGGT-GGGGGTGT--CATGGAATCTTAGGAGC-CCTGCATTCCAATTGCCCAGGCTTTGCTGAAACAC-AGGCACCCTAGTCTCACCTGAGGGTCACCACCAATGGGGATCATTCCTTCAGCATTCACTCTCAGTATTCGTGTACCCTTGTGATGATGCCACAGACCCGTGTCTTTCCCAATACATCTAAGCATATTCCTCACTGTTTATCTCTTGTCTGTACAACATCATCAA
s panTro5.chr1                    208014066 273 - 228573443 CAGTGTGCCAGGTAACGGTCTGCAGTTGCAATAACAGAATTAGAAGGT-GGGGGTGT--CATGGAATCTTAGGAGC-CCTGCATTCCAATTGCCCAGGCTTTGCTGAAACAC-AGGCACCCTCGTCTCACCTGAGGGTCACCACCAATGGGGATCATTCCTCTAAAATTCACTCTTAGTACTCGTGTACCCTTGTGACAATGCCACAGACCCATCTCTTTCCCAATACATCTAAGCACATTCCTCATTGTTTATCGCTTGTCTGTACAACATCATCCA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208148078 273 - 229774977 CAGTGTGCCAGGTAACGGTCTGCAGTTGCAATAACAGAATTAGAAGGT-GGGGGTGT--CATGGAATCTTAGGAGC-CCTGCATTCCAATTGCCCAGGCTTTGCTGAAACAC-AGGCACCCTCGTCTCACCTGAGGGTCACCACCAATGGGGATCATTCCTCTAAAATTCACTCTTAGTACTCGTGTACCCTTGTGACAATGCCACAGACCCATCTCTTTCCCAATACATCTAAGCACATTCCTCATTGTTTATCGCTTGTCTGTACAACATCATCCA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3818411 267 -   8455952 CAGCGTGCCAGGTAACCGTCTGCAGTTGCCATAACA-AATTA-AAGGT-GGGGGTGT--CATGGAATCTTAGGAGC-CCTGCATTCCAATTGCCCAGGCTTTGCTGAAACAC-AGGCACCCT-GTCTCACCTGAGGGTCACCACCAATGGGGATCATTCCTTCA--ATTCACTCTCAGTATTCGTGTACCCTTGTGACAATGCCACAGACCCATGTCTTTCCCAATACATCTAAGCACATTCCTCA-TGTTTATCTCTTGTCTGTACAACATCATCCA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    273869 273 +    297174 CAGCGTGCCAAGTAACTGTCTGCAGTTGCAATAACAGAATTAGAACAT-AGGGGTGT--CATGGAATCTTAGGAGC-TCTGCGTTGCAATTGCCCAGGCTTTGCTGAAACTC-AGGCACCCTAGTCTCACCTGAGGGTCACCACCAATGGGGATTATTCCTTCAGCATTCCCTCTCAGTATTCGTGTACCCTTGTGACAATGCCACAGACCCATCTCTTTCCCAATACATCTAAGTATGTTCCTCACTGTTTATCTCTTGTCTGTACAATATCATCAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103763080 272 - 225584828 CAGCGTGCCAGGTAACCGTCTGCAGTTGCAATAACAGAATTAGAAGGT-GGGGGTGT--CGTGGAATCTTAGGAGC-CCTGCATTCCAATTGCCCAGGCTTTGCTGAAACAC-AGGCACCCTGGTCTCACCTGAGG-TCACCACCAATGGGGATCATTCCTTCAGCATTCACTCTCAGTATTCGTGTACCCTTGTGACAATGGCACAGACCCATCTCTTTCCCAATACATCTAAGCATATTCCTCACTGTGTAGCTCTTGTCTGTACAAAATCGTCAA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211908323 271 + 227556264 CAGCGTGCCAGGTAACGGTCTGCAGTTGCAATAACAGAATTAGAAGGT-GGGGGTGT--CATGGAATCTTAGGAG--CCTGCATTCCAATTGCCCTGGCTTGGCTGAAACAC-AGGCACCCTGGTCTCACCTGAGGGTCACCACCAATGGGC-TCATTCCTTCAGCATTCACTCTCAATATTCATGTACCTTTGTGACAATGCCACAGACCCATCTCTTTCCCAATACATCTAAGCACATTCCTCACTGTTTATCTCTTGTCTGTACAACATCATCAA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11415999 272 -  14060431 CAGCGTGCCAGGTAACTGTCTGCAGTTGCAATAACAGAATTAGAAGGT-GGGGGTGT--CATGGAATCTTAGGAGC-CCTGCATTCCAATTGCCCAGGCTTTGCTGAAACAC-AGGCACCCTGGTCTCACCTGAGGTTCCCCCCCATTGGGG-TTCTTTCTTGAGCATTCACTCTCAGTATTTGTGTACCCTTGTGACAATGGCACAGACCCATCTCTTTCCCAATACATCTAAGCATATTCCTCACTGTTTAGCTCTTGTCTGTACAAAATCATCAA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1827369 273 -   2461138 CAGCGTGCCAGGTAACCGTCTCCAGTTGCAATAACAGAATTAGAAGGT-GGGGGTGT--CGTGGAATCTTAGGAGC-CCTGCATTCCAATTGCCCAGGCTTTGCTGAAACAC-AGGCACCCTGGTCTCACCTGAGGGTCACCACCAATGGGGATCATTCCTTCAGCATTCACTCTCAGTATTCGTGTAACCTCGTGACAATGGCACAGACCCATCTCTTTCCCAATACATCTAAGCATATTCCTCACTGTTTAGCTCTTGTCTGTACAAAATCGTCAA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026417 272 -   1280666 CAGCGTGCCAGGTAACCGTCTGCAGTTGCAATAACAGAATTAGAAGGT-GGGGGTGT--CATGGAATCTTAGGAGC-CCTGCATTCCAATTGCCCAGGCTTTGCTGAAACAC-AGGCACCCTGGTCTCACCTGA-GGTCACCACCAATGGGGATCATTCCTTCAGCATTCACTCTCAGTATTCGTGTACCCTTGTGACAATGGCACAGACCCATCTCTTTCCCAATACATCTAAGCATATTCCTCACTGTTTAGCTCTTGTCTATACAAAATCGTGAA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             511662 274 -   1325925 CAGCGTGCCAGGTAACCGTCTGCAGTTGCAATAACAGAATTAGAAGGTGGGGGGTGT--CCTGGAATCTTAGGAGC-CCTGCATTCCAATTGCCCAGGCTTTGCTGAAACAC-AGGCACCCTGGTCTCACCTGAGGGTCATCACCAATGTGGATCATTCCTTCAGCATTCACTCTCAGTATTCGTGTACCCTCGTGACAATGGCACAGACCCATTTCTTTCCCAATACATCTAAGCATAGTCCTCACTGTTTAGCTCTTGTCTGTACAAAATCATCAA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3749875 271 -   3775709 CAGCGTGCCAGGTAACGGTCTGCAGTTGCAATAACAGAATTAGAAGGT-GGGGGTGT--CATGGAATCTTAGGAG--CCTGCATTCCAATTGCCCCGGCTTGGCTGAAACAC-AGGCACCCTGGTCTCACCTGAGGGTCACCACCAATGGGC-TCATTCCTTCAGCATTCACTCTCAATATTCATGTACTTTTGTGACAATGCCACAGACCCATCTCTTTCCCAATACATCTAAGCACATTCCTCACTGTTTATCTCTTGTCTGTACAACATCATCAA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3661027 226 +  47448759 -------------------------------------------AAGGT-GAGGGTGT--CATGGAATCTCAGGAGC-CCTGCACTCCAATTGCCCAGGCTGTGCTGAAACCCAAGGCCCCCTGGTCTCACCTTAGAGTC---ATTGATGGGGACCATTTCCTCAGCAGTCCCTCTCAGTATTTGTGCACCTTTGTG--AGTGCTGCAGACTCACCTCTTTCTCAATATATCTAAGCATATTCCTTGTTGTTTATCTCTTGTGTATATAAAATCATCAA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2812332 270 -   4070394 CTGTGTACCAGGTAACCGTCTGCTGTTGCAGTAACAGAATTAGAAGCT-GGGCGTGT--CATGGAATCTTAGGAGC-CCTTCATTCCAATTGCCCAG--TTTGCTAAAACAC-AGGCCTCCTGGTCTCACCTGAG-GTCACAACCGATGGGGGCCGTTCCTCTATCAGTCACTCTCAGTATTTGTGTACCCTTGTGACAATGCCACAGTCCCACCTCATTCCCAATACATCTCAGCATGTGCCTCATTTTTCATCTCTTGTGTGTATAAAATTGTAAA
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             275271 269 +    407294 CAGAGTCCCAGGTAACGGTCTGCTGTTGCAATAACAGAATTCGAAGCT-GGGCGTGT--CATGGAATCTTAGGAGC-CCTTCATTCCAATTGCCCAGGGTTTGCTAAAACAC-AGGCCTCCTGGTCTCACCTGAG-GTCACAACCGATGGGGACCATTCCTCTATCAGTCA--CTCAGTATTTGTG-ACACTTGTGACAATGCCACAGTCCCATCTCATTCCCAATATATCTAAGCATGTGCCTCACTTTTCATCTCTTATGTGTATAAAATCATCAT
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8650580 255 -   9938236 TGCGGCGCCGCTTAACGGTCTGGGCTTCCAGTAACAGATTTAGAAGGT-GGGGGTGTGCCACGGGGTCTTGGGCGCGCCCGCCTTCCGGTTGCCTGGGCT-------------AGGCCTTCTGTTCCTCCCTGAG-GTCATCACCAATGGGGA-CACCCCCTAACCGGCCACTCTCCAGAGTGA------CTTGTGCTGATGCCACAGACCCATCCCTTTCCCTGTAAACTTTGGTCTATTTCACATTGTTCAT-TTTTATTTCTGTTAAATCACCAA
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=10000.000000
s hg38.chr1_KI270711v1_random         29999 1 +     42210 G
s panTro5.chr1                    208014339 1 - 228573443 G
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208148351 1 - 229774977 G
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3818678 1 -   8455952 G
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274142 1 +    297174 G
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103763352 1 - 225584828 G
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211908594 1 + 227556264 G
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11416271 1 -  14060431 G
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1827642 1 -   2461138 G
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026689 1 -   1280666 G
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             511936 1 -   1325925 G
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    110518357 1 - 215897965 G
i nasLar1.chr1                    N 0 N 0
s colAng1.NW_012114988v1            3750146 1 -   3775709 G
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3661253 1 +  47448759 G
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2812602 1 -   4070394 C
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             275540 1 +    407294 G
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8650835 1 -   9938236 G
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=463516.000000
s hg38.chr1_KI270711v1_random         30000 53 +     42210 GCAGAAACAGTTTCCCAACAGGTTGTATTTTCTTAATGGTAGTCATGAAGTCA
s panTro5.chr1                    208014340 53 - 228573443 GCAGAACCAGTTTCCCAACAGGTTATATTTTCTTAACGGTAGTCATGAAGTCA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208148352 53 - 229774977 GCAGAACCAGTTTCCCAACAGGTTATATTTTCTTAACGGTAGTCATGAAGTCA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3818679 51 -   8455952 GCAGAA-CAGTTTCCCAACAGGTTATATTTTCTTAA-GGTAGTCATGAAGTCA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274143 53 +    297174 GCAGAAACAGTTTCCCAACAGGTTATATTTTCTTAATGGTAGTCATGAAGTCA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103763353 53 - 225584828 GCAGAAACAGTTTCCCCACAGGTTATAGTTTCTTAATGGTAGTCATGAAGTCA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211908595 53 + 227556264 GCAGAAACAGTTTCCCAACAGGTTATATTTTCTTAATGGCAGTCATGAAGTCA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11416272 53 -  14060431 GCAGAAACAGTTTCCCAACAGGTTATATTTTCTTAATGGTAGTCATGAAGTCA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1827643 53 -   2461138 GCAGAAACAGTTTCCCAACAGGTTATATTTTCTTAATGGCAGTCATGAAGTCA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026690 53 -   1280666 GCAGAAACAGTTTCCCAACAGGTTATATTTTCTTAATGGTAGTCATGAAGTCA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             511937 53 -   1325925 GCAAAAACAGTTTCCCAACAGGTTATATTTTCTTAATGGTAGTCATGAAGTCA
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3750147 53 -   3775709 GCAGAAACAGTTTCCCAACAGGTTATATTTTCTTAATGACCGTCATGAAGTCA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3661254 53 +  47448759 GTGGAGATAGTTTTTCAAGAAGTTACATTTTCTTTGTGGTAGTCAGGAAGTCA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2812603 53 -   4070394 GCAGAAACAGTTTCCCAACATGTGATATTTTCTTAATGCTAGTCAGGAAGTCA
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             275541 53 +    407294 GCAGAAAGAGTTTCCCAACATGTGATATTTTCTTAATGCTAGTCATGAAGTCA
i cebCap1.NW_016108146v1          C 0 I 20
s otoGar3.GL873592                  8650836 52 -   9938236 GCAGAAGTAGTTGCCTATCATACTTTATTTTTGTAATGGTTG-CACAAAATCA
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=67324.000000
s hg38.chr1_KI270711v1_random         30053 15 +     42210 CCCCACCTGCTCTC------A--
s panTro5.chr1                    208014393 15 - 228573443 CCCCACCTGCTCTA------A--
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208148405 15 - 229774977 CCCCACCTGCTCTA------A--
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3818730 15 -   8455952 CCCCACCTGCTCTA------A--
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274196 15 +    297174 CTCTACCTGCTCTA------A--
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103763406 15 - 225584828 CCCCACCTGCTGTA------A--
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211908648 15 + 227556264 CCCCACCTGCTCCC------A--
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11416325 15 -  14060431 CCCCACCTGCTCCC------A--
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1827696 15 -   2461138 CCCCACCTGCTCTA------A--
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026743 15 -   1280666 CCCCACCTGCTGTA------A--
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             511990 15 -   1325925 CCCCACCTGCTGTA------A--
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3750200 15 -   3775709 CCCCACCTGCTCTA------A--
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3661307 14 +  47448759 CTGCACCTTCTCTA---------
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2812656 20 -   4070394 GTCATCCCTCCTTCTCATAT---
i saiBol1.JH378257                C 0 C 0
s otoGar3.GL873592                  8650888 17 -   9938236 CCCCACCTTCTCCT------TAT
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cebCap1.NW_016108146v1             275594 20 +    407294 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=22419.000000
s hg38.chr1_KI270711v1_random         30068 3 +     42210 GTT
s panTro5.chr1                    208014408 3 - 228573443 GTT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208148420 3 - 229774977 GTT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3818745 3 -   8455952 GTT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274211 3 +    297174 GTT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103763421 3 - 225584828 GAT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211908663 3 + 227556264 GTT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11416340 3 -  14060431 GTT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1827711 3 -   2461138 GAT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026758 3 -   1280666 GTT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             512005 3 -   1325925 GAT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3750215 3 -   3775709 GTT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3661321 3 +  47448759 GTT
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2812676 3 -   4070394 GTG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             275614 3 +    407294 GTT
i cebCap1.NW_016108146v1          I 20 C 0
s otoGar3.GL873592                  8650905 3 -   9938236 GTT
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=93363.000000
s hg38.chr1_KI270711v1_random         30071 8 +     42210 AAAACAGA
s panTro5.chr1                    208014411 8 - 228573443 AAAACAGA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208148423 8 - 229774977 AAAACAGA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3818748 8 -   8455952 AAAACAGA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274214 8 +    297174 AAAACAGA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103763424 8 - 225584828 AAAACAGA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211908666 8 + 227556264 AAAACAGA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11416343 8 -  14060431 AAAACAGA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1827714 8 -   2461138 AAAACAGA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026761 8 -   1280666 AAAACAGA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             512008 8 -   1325925 AAAACAGA
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197964660 8 - 215897965 AAAACCGA
i nasLar1.chr1                    N 0 I 5
s colAng1.NW_012114988v1            3750218 8 -   3775709 AAAACCGA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3661324 8 +  47448759 AAAGCAGA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2812679 8 -   4070394 AAAACAGA
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             275617 8 +    407294 AAAACAGA
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8650908 8 -   9938236 AAAACAGA
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=13472.000000
s hg38.chr1_KI270711v1_random         30079 5 +     42210 GCTTA
s panTro5.chr1                    208014419 5 - 228573443 TCTTA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208148431 5 - 229774977 TCTTA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3818756 5 -   8455952 TCTTA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274222 5 +    297174 TCTTA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103763432 5 - 225584828 GCCTT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211908674 5 + 227556264 TCTTA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11416351 5 -  14060431 TCTTA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1827722 5 -   2461138 GCCTA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026769 5 -   1280666 ACCTT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             512016 5 -   1325925 GCCTT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3750226 5 -   3775709 TCTTA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3661332 5 +  47448759 TCTTA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2812687 5 -   4070394 ATTGA
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             275625 5 +    407294 ATTGA
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8650916 5 -   9938236 CGTTA
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197964668 5 - 215897965 I
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=25924.000000
s hg38.chr1_KI270711v1_random         30084 3 +     42210 AGG
s panTro5.chr1                    208014424 3 - 228573443 AGG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208148436 3 - 229774977 AGG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3818761 3 -   8455952 AGG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274227 3 +    297174 AGG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103763437 3 - 225584828 AGG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211908679 3 + 227556264 AGC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11416356 3 -  14060431 AGC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1827727 3 -   2461138 AGG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026774 3 -   1280666 AGG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             512021 3 -   1325925 AGG
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197964673 3 - 215897965 AGC
i nasLar1.chr1                    I 5 I 31
s colAng1.NW_012114988v1            3750231 3 -   3775709 AGC
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3661337 3 +  47448759 AGG
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2812692 3 -   4070394 AGG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             275630 3 +    407294 AGG
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8650921 3 -   9938236 GGG
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=217873.000000
s hg38.chr1_KI270711v1_random         30087 31 +     42210 -CTTTTCCACAGGTGTAAGATATCAAACTTTT
s panTro5.chr1                    208014427 31 - 228573443 -CTTTTCCACAAGTGTAAGATATCAAACTTTT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208148439 31 - 229774977 -CTTTTCCACAAGTGTAAGATATCAAACTTTT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3818764 29 -   8455952 -CTTTTCCACA-GTGTAAGATATCAAAC-TTT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274230 30 +    297174 -CTTTTCCACAAGTCTAAGGTATCAAAT-TTT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103763440 31 - 225584828 -CTTTTCCACAGGTGTAAGATACCAAACTTTT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211908682 31 + 227556264 -CTTTTCTGCAAGTGTAAGATATGAAACTTTT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11416359 31 -  14060431 -CTTTTCTGCAAGTGTAAGATATGAAACTTTT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1827730 31 -   2461138 -CTTTTCCACAGGTGTAAGATACCAAACTTTT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026777 31 -   1280666 -CTTTTCCACAGGTGTAAGATATCAAACTTTC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             512024 31 -   1325925 -CTTTTCCACAGGTGTAAGATACCAAACTTTT
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3750234 31 -   3775709 -CTTTTCTACAAGTGTCAGATATGAAACTTTT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3661340 31 +  47448759 -CTTTTCCACACATAAAAGATGTCAAACTTTT
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2812695 31 -   4070394 -CTTTTCCACAAGTTTAACACATCATCCCATT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             275633 31 +    407294 -CTTCTCCACAAGTTTAACATATCAACCTATT
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8650924 30 -   9938236 CTTTTTCCACA-GTG-AAAATCTCAAATGTTT
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197964676 31 - 215897965 I
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=574387.000000
s hg38.chr1_KI270711v1_random         30118 62 +     42210 AGCCTGCCCTGATTTCCTCTGGGTCTTCTGCAGTT---TTGTCTGTATCCACTAGAAAGTGAATG
s panTro5.chr1                    208014458 62 - 228573443 AGCCTGCCCTGATTTCCTCTGGGTCTTCTGCAGTT---TTGTCTGTATCCACTAGAAAGTGAATG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208148470 62 - 229774977 AGCCTGCCCTGATTTCCTCTGGGTCTTCTGCAGTT---TTGTCTGTATCCACTAGAAAGTGAATG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3818793 60 -   8455952 AGCCTGCCCTGA-TTCCTCTGGGTCTTCTGCAGTT---TT-TCTGTATCCACTAGAAAGTGAATG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274260 62 +    297174 AGCCTGCCCTGATGTCCTCTGGGTCTTCTGCAGTT---TTTTCTGTATTCACTAAAAAGTGAATG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103763471 62 - 225584828 AGCCTGCTCTGATATCCTCTGGGTCTTCTGCAGTT---TTTTCTGTATCCACTAGAAAGTGAATG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211908713 62 + 227556264 AGCCTGCACTGATATCCTCTGCATCTTCTGCAGTT---TTTTCTGTATCCACTAGAAAGTGAATG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11416390 62 -  14060431 AGCCTGCACTGATATCCTCTGCATCTTCTGCAGTT---TTTTCTGTATCCACTAGAAAGTGAATG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1827761 62 -   2461138 AGCCTGCCCTGATATCCTCTGGGTCTTCTGCAGTT---TTTTCTGTATCCACTAGAAAGTGAATG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026808 62 -   1280666 AGCCTGCCCTGATATCCTCTGGGTCTTCTGCAGTT---TTTTCTGTATCCACTAGAAAGTGAATG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             512055 62 -   1325925 AGCCTGCTCTGATATCCTCTGGGTCTTCTGCAGTT---TTTTCTGTATCCACTAGAAAGTGAAGG
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197964707 60 - 215897965 AGCCTGCGCTGATATCCTCTGCATCTTCTGCAA-T---TTTTCTCTATCCACTAGAAAGTG-ATG
i nasLar1.chr1                    I 31 C 0
s colAng1.NW_012114988v1            3750265 62 -   3775709 AGCCTGCACTGATATCCTCTGCATCTTCTGCAGTT---TTTTCTCTATCCACTAGAAAGTGAATG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3661371 63 +  47448759 AGACGGCCATGATATCTTCTG--TGTTCTGCATTTTTGTTTTCTGTACCTACTGAAAAGTTAATG
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2812726 62 -   4070394 ACACTGCCGTGACAGCCTCTGACTCTTCTGCAGTT---TTTTCTGTATCCACTAGAAAGCGAATG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             275664 62 +    407294 ACACTGCCATGTTATCCTCTGAGTCTGCTGCAGTT---TTTTCTGCATCCACTAGAAAGTGAATG
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8650954 61 -   9938236 AGATGGCCATGATGCTCT-TGAGACTTCTACAGTT---TTTTCTGTATCCACTAAAAAGTGTAGG
i otoGar3.GL873592                C 0 I 6474
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=496049.000000
s hg38.chr1_KI270711v1_random         30180 51 +     42210 AATAATTCATTTGTAAAAAATGTTGTCTTGCCTGTCTCAGTATTCTTCTTG
s panTro5.chr1                    208014520 51 - 228573443 AATAATTCATTTGTAAAAAATGTTGTCTTTCCTGTCTCAGTATTCTTCTTG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208148532 51 - 229774977 AATAATTCATTTGTAAAAAATGTTGTCTTTCCTGTCTCAGTATTCTTCTTG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3818853 49 -   8455952 AATAATTCATTTTTTAAAAATGTT-TCTTTCCTGTCTCAGTATTCTTC-TG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274322 51 +    297174 AATAATTCATTTTTTAAAAATGTTTTCTTTCCTGTCTCAGTATTCTTCTTG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103763533 51 - 225584828 AATAATTCATTTTTAAAAAATGTTTTCTTTCCTGTCTCAGTATTCTTCTTC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211908775 51 + 227556264 AATAATTCATTTTTTAAAAATGTTTTCTTTCCTGTCTCAGTATTATTCTTG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11416452 51 -  14060431 AATAATTCATTTTTAAAAAATGTTTTCTTTCCTTTCTCAGTATTCTTCTTG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1827823 50 -   2461138 AATAATTCATTTTT-AAAAATGTTTTCTTTCCTGTCTCAGTATTCTTCTTC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026870 51 -   1280666 AATAATTCATTTTTTAAAAATGTTTTCTTTCCTGTCTCAGTATTCTTCTTC
i chlSab2.chr20_KE148050v1_random C 0 I 762
s manLeu1.NW_012105087v1             512117 51 -   1325925 AATAATTCATTTTTAAAAAATGTTTTCTTTCCTGTCTCAGTATTCTTCTTC
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197964767 51 - 215897965 AATAATTCATTTTTTAAAAATGTTTTCTTTCCTGTCTCAGTATTCTTCTTA
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3750327 51 -   3775709 AATAATTCATTTTTAAAAAATGTTTTCTTTCCTGTCTCAGTATTCTTCTTG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3661434 50 +  47448759 AATAATTTA-TCTTTAAAAATATTTTCTCCCCTGACTCAGTGTTCTCCTCG
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2812788 51 -   4070394 AGGAATTCATTTTTTAAAAATGTTTTCTTTCCTGGCTCAATATTCTTCTTG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             275726 51 +    407294 AATAATTCATTTCTTAAAAATGTTTTCTTTCCTGGCTCGATATTCTTCTTG
i cebCap1.NW_016108146v1          C 0 C 0
s otoGar3.GL873592                  8657489 49 -   9938236 AATAATTCA-TTTTAAAAAATGTTTTCTGTCCTGTCTCAATATTTTCTTT-
i otoGar3.GL873592                I 6474 C 0
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=338080.000000
s hg38.chr1_KI270711v1_random         30231 40 +     42210 CTG-TTTCCCATTGTTATGTTGATTTC-TTTTTTCTCACTGG
s panTro5.chr1                    208014571 40 - 228573443 CTG-ATTCCCATTGTTATGTTGATTTC-TTTTTTCTCACTGG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208148583 40 - 229774977 CTG-ATTCCCATTGTTATGTTGATTTC-TTTTTTCTCACTGG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3818902 40 -   8455952 CTGCATTCCCATTGTTATGTTGATTTC-TTTTTTCT-ACTGG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274373 41 +    297174 CTG-CATCCCATTGTTACGTTGATTTCTTTTTTTCTTACTGG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103763584 39 - 225584828 CTG-CAACCCACTGTTATGTTGATTTC--TTTTTCTCAGTGG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211908826 40 + 227556264 CTG-CATCTCATTGTTATGTTGATTTC-TTTTTTCCTACTGG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11416503 39 -  14060431 CTG-CATCCCATTGTTATGTTGATTTC--TTTTTCTCAGTGG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1827873 38 -   2461138 CTG-CAACCCACTGTTATGTTGATTTC---TTTTCTCAGTGG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1027683 39 -   1280666 CTG-CAACCCACTGTTATGTTGATTTC--TTTTTCTCAGTGG
i chlSab2.chr20_KE148050v1_random I 762 C 0
s manLeu1.NW_012105087v1             512168 39 -   1325925 CTG-CAACCCACTGTTATGTTGATTTC--TTTTTCTCAGTGG
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197964818 40 - 215897965 CTG-CATCTCATTGTTACGTTGATTTC-TTTTTTCTTACTGG
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3750378 40 -   3775709 CTG-CATCTCATTGTTACGTTGATTTC-TTTTTTCTTACTGG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3661484 40 +  47448759 ATG-CATCCCATTGTTATGTTGATTTC-TTTTCTCTGACTGG
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2812839 40 -   4070394 CTG-CATCCCATGGTTATGCTGATTTA-TATTTTCTTACTGG
i saiBol1.JH378257                C 0 I 2
s cebCap1.NW_016108146v1             275777 41 +    407294 CTG-TATCCCATGGTTATGCTGATTTAGTTTTTTTTTACTGG
i cebCap1.NW_016108146v1          C 0 I 36
s otoGar3.GL873592                  8657538 40 -   9938236 CTG-GATCCCATTGTTATGCTGGTTTC-TATTTTCTTACTAG
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=60122.000000
s hg38.chr1_KI270711v1_random         30271 13 +     42210 GGCAC------------CATCTT---------------------TG
s panTro5.chr1                    208014611 13 - 228573443 GGCAC------------CATCTT---------------------TG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208148623 13 - 229774977 GGCAC------------CATCTT---------------------TG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3818942 12 -   8455952 GGCAC------------CTTC-T---------------------TG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274414 13 +    297174 GGCAC------------CATCTT---------------------GG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103763623 13 - 225584828 GGCAC------------CATCTT---------------------GG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211908866 24 + 227556264 GGCACCAGTAAGAAAAGCATCTT----------------------G
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11416542 13 -  14060431 GGCAC------------CATCTT---------------------GG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1827911 13 -   2461138 GGCAC------------CATCTT---------------------GG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1027722 13 -   1280666 GGCAC------------CATCTT---------------------GG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             512207 13 -   1325925 GGCAC------------CATCTT---------------------GG
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197964858 13 - 215897965 GGCAC------------CATCTT---------------------GG
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3750418 13 -   3775709 GGCAC------------CATCTT---------------------GG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3661524 13 +  47448759 GGTAG------------CATCTT---------------------GG
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2812881 34 -   4070394 GATAT------------CACTACACTGATATTTGTGGCAGAAGAGA
i saiBol1.JH378257                I 2 C 0
s otoGar3.GL873592                  8657578 13 -   9938236 TGAAG------------TATGTT---------------------GG
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cebCap1.NW_016108146v1             275818 36 +    407294 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=3479882.000000
s hg38.chr1_KI270711v1_random         30284 393 +     42210 CTTTTCATTACACTCTAGACCAGTTTGACATCCCTATGTCCAGAGCTCTTCCTCTA--TGTGGGTTGATTTGGTT-TTTGATGTCACTGAGCGCTACATTTTATACTTGTCACTTATGGATGTCATTCTAGTGTCACAAGAGCTCTTTTCAAGGTATCAAGTGATCAAAATCATTTATATAGAGATCTCCTGAAAACATGT--GTGACCATCTATCTTGGGAAGTTTCATAAACCTGATGCT--------------ATTTTGTTGTTTCCATTTTGTTTTC--CCATATACTGAAAAGAACAGGG-CCATGAGCGGTTCTTATGCAATATGGTTTGATATATATTT-TGTTG---AGATGACCTAA---CACCATTGATTTTGGGTTGCATTCCACTAACAGAACATGGCAAGATCAAGGTT
s panTro5.chr1                    208014624 393 - 228573443 CTTTTCATTACACTCTAGACCAGTTTGACATCCCTATGTCCAGAGCTCTTCCTCTA--TGTGGGTTGATTTGGTT-TTTGATGTCACTGAGCGCTACATTTTATACTTGTCACTTATGGATGTCATTCTAGTGTCACAAGAGCTCTTTTCAAGGTATCAAGTGACCAAAATCATTTATATAGAGATCTCCTGAAAACATGT--GTGACCATCTATCTTGGGAAGTTTCATAAACCTGATGCT--------------ATTTTGTTGTTTCCATTTTGTTTTC--CCATATACTGAAAAGAACAGGG-CCATGAGCGGTTCTTATGGAATGTGGTTTGATATCTATTT-CATTG---GGTTGGACTAA---CACCATTGATTTTTGGTTTCATTCCACTAACAGAACATGGCAAGATCAAGGTT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208148636 393 - 229774977 CTTTTCATTACACTCTAGACCAGTTTGACATCCCTATGTCCAGAGCTCTTCCTCTA--TGTGGGTTGATTTGGTT-TTTGATGTCACTGAGCGCTACATTTTATACTTGTCACTTATGGATGTCATTCTAGTGTCACAAGAGCTCTTTTCAAGGTATCAAATGACCAAAATCATTTATATAGAGATCTCCTGAAAACATGT--GTGACCATCTATCTTGGGAAGTTTCATAAACCTGATGCT--------------ATTTTGTTGTTTCCATTTTGTTTTC--CCATATACTGAAAAGAACAGGG-CCATGAGCGGTTCTTATGGAATGTGGTTTGATATCTATTT-CATTG---GGTTGGACTAA---CACCATTGATTTTTGGTTTCATTCCACTAACGGAACATGGCAAGATCAAGGTT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3818954 381 -   8455952 CTTTTCATTACATTCTACACCAGTTTGACATCCCTA-GTCCA-AGCTCTTCCTCTA--TGTGGGTTGATTTGTTT-TTTAATGTCACTGAGC-CTAC-TTTTATACTTGTCACTTATAGATGTCATTCTAGTGTCACAAGA-CTCTTTTCAAGGTATCAAGTGACC-AAATCATTTATATAGAG-TCTCCTGAAAACATGT--GTGACCATCTATCTTGGGAAGTTTT-TAAACCTGATGCT--------------ATTTTGTTGTTTCCATTTTGTTTTC--CCATATACTGAAAAGAACAGGG-CCATGAGC-GTTCTTATGGAATGTGGTTTGATATCTATTT--GTTG---GAT--GACTAA---CACCATTGATTTTTGGTTTCATTCCACTAACAGAACATGGCAAGATCAAGGTT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274427 394 +    297174 CTTTTCATTACACTCTAGACAAGTATGACATCCCAACAACCAAAACTCTTCCTCTA--TGTGGGTTGATTTGTTT-TTTAATGTCACTGAGCACTACATTTTATACTTGTCACTTATGAATGTCATTCTAGTGCCACAAGAGCTCTTTTCAAGGTATCAAGTGATCAAAACCATTTATATAGGGATCTCCTGAAAACGTGT--GTGACCATCTATCTTGGGAATTTTTGTAAACCTGATGCT--------------ATTTTGTTGTTTCCATTTTGTTTTC--CCATATACTGAAAAGAACAGGG-CCACGAGCAGTTCTTATGGAATATGGTTTGATACATATTTTTGTTG---AGTTGGACTAA---TACCATTGATTTTTTGTTTCATTCCACTAACAGAACATGGCAAGATCAAGGTT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103763636 379 - 225584828 GCTTTCATTACACTCTAGACCAGTTTGGCATCCCTACGTCCAAAGCTCTTCCTCTA--TGTGGGTTGATTTGTTT-TTTAATGTCACTGAGCACTACATTTCATACTTATCACTTATGGATGTCATTCAAGTGCCACAAGACCTCTTTTCAAGGTATCAAGTGATCACAATAATTTATATAGAGATCTCCTGAAAACATGT--GTGACCATCTATCTTGGGAATTTTTGTAAACCTGAGGCT--------------A--------------TTTTGTTTTC--CCATATACTGAAAAGAACAGGG-CCACGAGCAGTTCTTGTGGAATATGGTTTGATGTATATTT-TGTTG---AGCTGGACTAA---CACCATTGATTTTTGGTTGCATTCCACTAACAGAACATGGCAAGATCACGGTT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211908890 393 + 227556264 GCTTTCACTACACTCTAGACCAGTTTGACATCCCTATGTCCAAAGCTCTTCCTCTA--TGTGGGTTGATTTGTAT-TTTCATGGCACTGAGCACCACATTTCATACTTGTCAATTGTGGATGTCATTCTAGTGCCTCAAGAGCTCTTTTCAAGGGATCAAGTGATCAAATTCATGTATATAGAGATCTCCTGAAAACATGT--ATGACCATCTATCTTAGGAAGTTTCATAAACCTGATGCT--------------ATTTGGTTGTTTCCCTTTTGTTTTC--CCATATACTGGAAAGAACAGGG-CCATGAGCGGCTCTTATGGAATATGTTTTGATATATATTT-TGTTG---AGTTGGACTAA---CATCATTCATTTTTGGTTTCATTTCACTAACAGAACATGGCAAGATCGAGGTT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11416555 382 -  14060431 GTTTTCATTACACTCTAGACCAGTTTGGCATCCCTACGTCCAAAGCTCTTCTTCTA--TGTGGGTTGATTTGGTT-TTTAATGTCACTGAGCACTACATTTTATACTTGTCACTTATGGATGTCATTCTAGTGCCACAAGACCTCTTTTCAAGGTATCAAGTGATCACAATAATTTATATAGAGATCTCCTGAAAACATGT--GTGACCATCTATCTTGGGAATTTTTGTAAACCTGAGGCT--------------A--------------TTTTGTTTTC--CCATATACTGAAAAGAACAGGG-CCACGAGCAGTTCTTGTGGAATATGGTTTGATGTATATTT-TGTTG---AGTTGGACTAACACCACCATTGATTTTTGGTTGCATTCCACTAACAGAACATGGCAAGATCACGGTT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1827924 379 -   2461138 GCTTTCATTACACTCTAGACCAGTTTGGCATCCCTACGTCCAGAGCTCTTCCTCTA--TGTGGGCTGATTAGTTT-TTCAATGTCACTGAGCACTACATTTCATACTTATCACTTATGGATGTCATTCAAGTGCCACAAGACCTCTTTTCAAGGTATCAAGTGATCAAAATCATTTATATAGAGGTCTCCTGAAAACATGT--GTGACCATCTATCTTGGGAATTTTTGTAAACCTGAGGCT--------------A--------------TTTTGTTTTC--CCATATACTGAAAAGAACAGGG-CCACAAGCAGGTCTTGTGGAATATGGTTTGATGTATATTT-TGTTG---AGTTGGACTAA---CACCATGGATTTTTGGTTGCATTCCACTAACAGAACATGGCAAGATCATGGTT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1027735 393 -   1280666 GCTTTCATTACACTCTAGACCTGTTTGGCATCCCTACGTCCAAAGCTCTTCCTCTA--TGTGGGTTGATTTGTTT-TTCAATGTCACTGAGCACTACATTTTATACTTATCACTTATGGATGTCATTCAAGTGCCACAAGACCTCTTTTCAAGGTATCCAGTGATCAAAATCATTTATATAGAGGTCTCCTGAAAACACGT--GTGACCATCTATCTTGGGAATTTTTGTAAACCTGATGCTATTTTGTTGTTTCCA--------------TTTTGTTTTC--CCATATACTGAAAAGAACAGGG-CCACGAGCAGTTCTTGTGGAATATGGTTTGATGTATATTT-TGTTG---AGCTGGACTAA---CACCATTGATTTTTGGTTGCATTCCACTAACAGAACATGGCAAGATCACGGTT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             512220 379 -   1325925 GCTTTCATTACACTCTAGACCAGTTTGGCATCCCTACGTCCAAAGCTCTTCCTCTA--TGTGGGTTGATTTGTTT-TTCAATGTCACTGAGCACTACATTTCATACTTATCACTTATGGATGTCATTCAAGTGCCACAAGACCTCTTTTCCAGGTATCAAGTGATCAAAATCATTTATATAGAGGTCTCCTGAAAACACGT--GTGACCATCTATCTTGGGAATTTTTGTAAACCTGAGGCT--------------A--------------TTTTGTTTTC--CCATATACTGAAAAGAACAGGG-CCACGAGCAGTTCTTGTGGAATATGGTTTGATGTATATTT-TGTTG---AGCTGGACTAA---CACCATTGATTTTTGGTTGCATTCCACTAACAGAACATGGCAAGATCACGGTT
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197964871 393 - 215897965 CTTTTCATTGCACTCTAGACCAGTTTGACATCCCTATGTCCAAAACTCTTCCTCTA--TGTGGGTTGATTTGTAT-TTTAATGGCACTGAGCACCACATTTCATACTTGTCAATTGTGGATGTCATTCTAGTGCCTCAAGAGCTCTTTTCAAGGGATGAAGTGATCAAACTCATGTATATAGAGATCTCCTGAAAGCATGT--GTGACCATCTATCTTAGGAAGTTTCGTAAACCTGATGCT--------------ATTTGGTTGTTTCCCTTTCGTATTC--CCGTATACTGGAAAGAACAGGG-CCATGAGCAGTTCTTACGGAATATGTTTTGATATATATTT-TGTTG---AGTTGGACTAA---CATCATTAATTTGTGGTTTCATTTCACTAACAGAACATGGCAAGATCAAGGTT
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3750431 392 -   3775709 C-TTTCACTACACTCTAGACCAGTTTGACATCCCTATGTCCAAAGCTCTTCCTCTA--TGTGGGTTGATTTGTAT-TTTAATGACACTGAGCACCACATTTCATACTTGTCAATTGTGGATGTCATTCGAGTGCCTCAAGAGCTCTTTTCAAGGTATCAAGTGATCAAACTCATGTATATAGAGATCTCCTGAAAGCATGT--ATGACCATCTATCTTAGGAAGTTTCCTAAACCTGATGCT--------------ATTTGGTTGTTTCCCTTCTGTTTTC--CCATATACAGGAAAGAACAGGG-CCATGAGCGGTTCTTATGGAATATGTTTTGATATATATTT-TGTTG---AGTTGGACTCA---CATCATTCATTTTTGGTTTCATTTCACTAACAGAACATGGCAAGATCAAGGTT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3661537 394 +  47448759 CTTTTTATTACACTTAAGACCA-TTTCACATCCCTATGTGCAAAGCTCTTCCTCTATCTGTGGGTTGATTTGTTTCCTTAATGTCACTGAACACT-CGTTTTATACTTGTCACTTACCAATATC-ATTGTGTCCCACAGGCATTCTTTTCAAGGTATCAAGTGATCAAAATCATTTGCGT--ATATCCCCTAAAAACATGT--GTGAACATATATTTTGGGAAGTCTTGTAAACCTAATGCT--------------ATTTTTTTGTTTTCATTTAGTTTTT--TCATGTATTGAAAGGAATAGGG-CCATGAACACTTCTTATGGAGTATTGTAGGAGATATACAT-TTATATATAGTTGCTATAA---CACCATTGATGTGTTGTTGCCTTCCACTAACAGAACCTGGCAAGATCATGGTC
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2812915 384 -   4070394 CTTTTCATTACACTTAACACCAGTTTGATGTCCCTATATCCAAAG--CTTCCTCTA--TGTGGGATAATTTGTTT-TTTAATGTGACTGAACACTACATCTCATTCTTGTCACTTACAGATGTCAATTTAGTCCCAGAAG-AGCCTTTTCAAGGTGTCAAGTCATCAAAATCACTTCTATAGAGACCTCCTGAAGGCAT--------ATATCTATCTTGGGAAGTCTGGTAATCCTGATATG--------------ATTTTGTTGTTTTCATTTCGTTTTT--CCATATATTGAAAATAACGGGG-CCATGAGCGGTCCTTATGGAAGACTGTTTGAGAGATATTT-TTCTG---AGTTGGTCTAA---CGCCGTTGATGTGTAGTTGGATCCCACTAACCAAACATGGTAAGATCAAGGTG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             275854 394 +    407294 CTTTTCACTACACTTAAGACCAGCTTGACATTCCTATGTCCAAAG--CTTCCTCCA--TGTGGGATGATTTGCTTTTTTAATGTGACTGAACATTACATCTCACGCTTGTCACTTATAGATGTCATTCTAGTCCCAGAAGAGCTCTTTTCAAGGTGTTAAGTCATTGAAATCATTTCTATGGAGATCTCCTGAAAGCATGT--GTGACCATCTATCTTGGGAAGTCTTGTAAACCTGATATG--------------ATTTTCTTGTTTTCATTTCATTTTTTCCCATATACTGAAAATAACAAGG-CCATGAGCGGTCCTTATGGAATACTGTTTGACAGATATTT-TTCTG---AGTTGGTCTAA---CACCATTGAGGTGTGGTTGCATCCCACTAACTAAACACCGTAACATCAAGGTG
i cebCap1.NW_016108146v1          I 36 C 0
s otoGar3.GL873592                  8657591 390 -   9938236 CTTTTCACTAAACTTAAAACCAG--TGACATCCCTGTCTCCTAAGTTTCTCCTCCATGTGTGGGTTGGTTTGCTT-TTTAATGCCACTAAACACTATATTCCATAATTGTCATGTATAAATATCATTCTAGTCCCAAAAGGGCTCTTTTCAAGATATCAAGAGGTCAAAGCTATTTATAT--ATATCTCCTGAATACATCTCCGTGACCATCTA-ATTGGAAAGCCTTGTAAACTTGATGCT--------------ATTTTTTGGTTTTCATTTGGTTCCT--CCATATACTGAATAGAACAGGGCCCATGAGCAGTT-GTATGGAATATTGTTTGATGTGTGATT---CTG---AGTTGGCCTAA---CACTGTTGACCAGTGGTTGTATTCCACTAACAGAACATGGTAAGATCAAGGTT
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=8934230.000000
s hg38.chr1_KI270711v1_random         30677 1045 +     42210 ATGGTCACGGTTGGTTGGTGATCCTCAGTGTTG-----CA--GTAGAAGGTGAGTTTGAGATGAGAGGAATGAGTAGGAAAGAGTGATCCCCTGAACCACCTCCTCGCTTTCTCAGCTTTCA-CCCCACCTAGGTTTTGTGAGCCTGGAACTTGGGAGACTGTTCTGTAGCCCAGGTCTCCTAAGATTGGCTG----CTGGACTTGCCTGAGTTGAGGGTGCGGTGGGT-TGACCCTGGGCTGCCCAGCATTCATGTGGTAGTGAAGGAAGG-AGGACTGGATCAATCCCATTTCAAAGCATGTCTCTCTGCACTCCACACTGTCCTCCAATGACAC--TGTAAGGAAACCGCTTTAAGACGTATCAACGGCTTTAAGTAAATGTATTTTCTGGCATCTGGGAGACCTGACATTCTGTGTCATAATGAAAATCTGTCATGTTtctttatttt-aaaaatgataaaactgcaggttcacagagttacatggcttacttgaggtcacacggGGATGAGTTTTCAGCACTGCCAATAAAAGCAATCACATGAATTATTCAGTAATTATTCATAGGATCCATATAATTCAGTAAATATTCACATAATTATTTACTAGTTGTTCATTGACCAATTCgtacaaggcattttgctcaaaactgtgcttatatttggacattgtatcttcatcataatcctg-tggtaatgctattatccgtaagtaacaggtaagaaacctgaagAGGAGGGATAGCAAATCATGTATTTGGACA-TATTTCCTTTTTTTTTTTTTTGGTTTTTGTGATGCTGGAAGAATGACCAGAATGAGTCATAGGAAGAGTATACATTCCTGTAGTATTTTCCAGGACAGAGGTGTGACCTCCTAGAGTACTGGGACCAAAATTCCCAAGTGTCTGCAACCTTGCTTTAACAGTATGGGAGATCACCTCTATC---------ACCTGGAATTCCCCTGGAACTCTGGAATATACAAGAGAAGTATGAGACTTGGGTCT-------------TCCCT----TGGCTGTGTTTAATTCACTCTTCTATGGAATACCAATGATTCTCACTAA--GAC--T
s panTro5.chr1                    208015017 1044 - 228573443 ATGGTCACGGTTGGTTCGTGATCCTCAGTGTTG-----CA--GTAGAAGGTGAGTTTGAGATGAGAGGAATGAGTAGGAAAGAGTGATCCCCTGAACCACCTCTTCACTTTCTCAGCTTTCATCCCCACCTAGGTTTTGTGAGCCTGGAACTTGGGAGACTGTTCTGTAGCCCAGGTCTCCTAAGATTGGCTG----CTGGACTTGCCTGAGTTGAGGGTGCAGTGAGTGTGATCCTGGGCTGCCCAGCATTCATGTGGTAGTGAAGGAAGG-AGGACTGGATCAATCCCATTTCAAAGCATGTCTCTCTGCACTCCACGCTGTCCTCCAATGACAC--TGTAAGGAAACCGCTTTAAGACGTATCAATGGCTTTAAGTAAATGTATTTTCTGGCATCTGGGAGACCTGACATTCTGTGtcataatgaaaatctgtcatgtttctttattttaaaaaatgataaaactgcaggttcacagagttacgtggcttacttgaggtcacacagGGATGAGTTTTCAGCACTGCCAATAAAAGCAATCACAGTAATTATTCAGTAATTATTCATAGGATCCACATAATTCAGTAAATATTCACATAA----TTACTAGTTGttcattgaccaattcgtacaaggcattttgctcaaaactgtgcttatatttggacattgtatcttcatcataatcctg-tggtaatgctattatccgtaagtaacaggtaagaaacctgaagAGGAGGGATAGCAAATCATGTATTTGGACA-TATTTTC--ATTTTTTTTTTTGGTTTTTGTGATGCTGGAAGAATGACCAGAATGAGTCATAGGAAGAGTATACATTCCTGTAGTATTGTCCAGGACAGAGGTGTGACCTCCTAGAGTACTGGGACCAAAATTCCCAAGTGTCTGCAACCTTGCTTTAACAGTATGGGAGATAACCTCTATC---------ACCTGGAATTCCCCTGGAACTCTGGAATATACAAGAGAAGTATGAGACTTGGGTCT-------------TCCCT----TGGCTGTGTTTAATTCACTCTTCTATGGAATACCAATGATTCTCACTAA--GACTTT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208149029 1035 - 229774977 ATGGTCACGGTTGGTTCGTGATCCTCAGTGTTG-----CA--GTAGAAGGTGAGTTTGAGATGAGAGGAATGAGTAGGAAAGAGTGATCCCCTGAACCACCTCTTCACTTTCTCAGCTTTCATCCCCACCTAGGTTTTGTGAGCCTGGAACTTGGGAGACTGTTCTGTAGCCCAGGTCTCCTAAGATTGGCTG----CTGGACTTGCCTGAGTTGAGGGTGCAGTGAGTGTGATCCTGGGCTGCCCAGCATTCATGTGGTAGTGAAGGAAGG-AGGACTGGATCAATCCCATTTCAAAGCATGTCTCTCTGCACTCCACGCTGTCCTCCAATGACAC--TGTAAGGAAACCGCTTTAAGACGTATCAACGGCTTTAAGTAAATGTATTTTCTGGCATCTGGGAGACCTGACATTCTGTGtcataatgaaaatctgtcatgtttctttatttt-aaaaatgataaaactgcaggttcacagagttacatggcttacttgaggtcacacagGGATGAGTTTTCAGCACTGCCAATAAAAGCAATCACAT-----------TAATTATTCTTAGGATCCATATAATTCAGTAAATATTCACATACTTATTTACTAGTTGttcattgaccaattcgtacaaggcattttgctcaaaactgtgcttatatttggacattgtatcttcatcataatcctg-tggtaatgctattatccgtaagtaacaggtaagaaacctgaagAGGAGGGATAGCAAATCATGTATTTGGACA-TATTTCC---ATTTTTTTTTTGGTTTTTGTGATGCTGGAAGAATGACCAGAATGAGTCATAGGAAGAGTATACATTCCTGTAGTATTGTCCAGGACAGAGGTGTGACCTCCTAGAGTACTGGGACCAAAATTCCCAAGTGTCTGCAACCTTGCTTTAACAGTATGGGAGATAACCTCTATC---------ACCTGGAATTCCCCTGGAACTCTGGAATATACAAGAGAAGTATGAGACTTGGGTCT-------------TCCCT----TGGCTGTGTTTAATTCAGTCTTCTATGGAATACCAATGATTCTCACTAA--GACTTT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3819335 1026 -   8455952 ATGGTCACGGTTGGTTGGTGATCCTCAGTGTTGC----CA--GTAGAAGGTGAGTTTGAG-TGAGAGGAACAAGTAGGAAAGAGTGATCCCCTGAACCACCTCCTCACTTTCT-AGCTTTCATCCCCACCTAGGTTTTGTGAGCCTGGAACTTGGGAGACTGTTCTGTAGCCCAGGTCTCCTAAGATTGGCTG----CTGGACTTGCCTGAGTTGAGGGTGCAGTGGGT-TGA-CCTGGGCTGCCCAGCATTCATGTGGTAGTGAAGGAAGG-AGGACTGG--TAATCCCATTT-AAAGCA--TCTCTCTGCAC-CCACGCTGTTCC---ATGACAC--TGTAAGGAA--CGCTTTAGA--GTATCAACGGCTTTAAGTAAATGTATTTTCTGG--TCTGGGAGACCTGACATTCTGTGtcataatgaaaatctgtcatgtttctttatttt-aaaaatgataaaactgcaggttcacagagttacgtggcttacttgaggtcacacagGGATGAGTTTTCAGCACTGCCAATAAAAGCAATCACAGTAATTATTCAGTAATTATTCATAGGATCCATATAATTCAGTAAATATTCACATAATTATTTACTAGTTGttcattgaccaattcgtacaaggcattttgctcaaaactgtgcttaaatttggacattgtatcttcatcataatcctg-tggtaatgctattatccgtaagtaacaggtaagaaacctgaggAGGAGGGATAGCAAATCATGTATTTGGACA-TATTTCC-----TTTTTTTTTGGTTTTTGTGATGCTGGAAGAATGACCAGAATGAGTCATAGGAAGAGTATACATTCCTGTAGTATTGTCCAGGACAGAGGTGTGACCTCCTAGAGTACTGGGACCAAAATTCCCAAGTGTCTGCAACCTTGCTTTAACAGTATGGGAGATAACCTCTATC---------ACCTGGAATTCCCCTGGAACTCTGGAATATACAAGAGAAGTATGAGACTTGGGTCT-------------TCCCT----TGGCTGTGTTTAATTCACTCTTCTGTGGAATACCAATGATTCTCACTAA--GACTTT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274821 1047 +    297174 ACGGTCAGGGTTGCTCGCTGATCTTCAGTGTTGCTGTGCA--GTAGAAGGTGAGTTTGAGGTGAGAGGCATGAGTAGAAAAGAGTGATCCCCTGAACCACCTCCTCACTTTCTCAGCTTTCA-TCCCACCTAGGTTTTGTGAGCCTGGAACTTGGGAGACTGTTCTGTAGCCCAAGTCTCCTAAGATTGGCTG----CTGGACTTGCCTGAGTTGAGGGTGCAGTGGGTGTGACCCTAGGCTGCCCAGCATTCATGTGGAAGTGAAGGAAGG-AGGACTGGATCAATCCCATTTGAAAGCATCTCTCTCTGCAGCCCACACCATCCTCCAATGACAC--TGTAAGGACACTGCTTTGAGATGTATCAAGGGCTTTAAGTCAATGTATTTTCTGGGGTCTGGGAGACCTGACGTTCTGTTTCAGAATGAAAATCTGTCAAGTTTGTTcatttt-acaaatgataaaactgcaggttcacaaagttacatggcttacatgaggtcacacagGGATGAGTTTTCAGCACTGCCAATAAAAGCAATCACAAtaattattcagtaattattcataggatccatataattcagtaaatattcacataattattcagtaattattcattgaccaattcatacaaggcattttgctcaaaactgtgctcatattttgacattgtatcttcatcataatcctgaaggtaatgctattatccataaataacaggtaagaaacttgaagAAGAGGGATAGCAAATCGTGTATTTGGCCA-TATTTCC-------ATTTTTTGGTTTTTGTGATGCTGGAAGAATGACCAGAATGAGTCACGGGAAGTGTATTCATTCCTGTATTATTTTCCAGGACAGAGGTGTGCCCTCATAGTGTACTGGGACCAAAATTCAGAAGTGTCTGCAACCTTGCTTTAACAGTATGGGAAATAACCTCTATC---------ACCTGGAATTTCCCTGGAACTTTGGAATATACAAAAGAAGTATGAGACTTGGGTCT-------------TCCTT----TGGCTGTGTTTAATTCACTCTTCTATGGAATACCAATGATTCTCACTAA--GACTTT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103764015 1032 - 225584828 CCGGTCAGGGTTGGTTGGTGATCCTCAGTGTTGCTGTGCA--GT---AGGTGAGTTTGAGGTGAGAGGAATGAGCAGGAAAGAGTGACCCCCTGAACCACCTCCTCACTTTCTCAGCTTTCATTCCCACCTAGGTTTTGTGAGCCTGGAACTTGGGAGACTGTCCTGTAGCCCAGGTCTCCTAAGATTGGCTG----GTGGACTTGCCTAAGTTGAGGGTGCAGTGGGTGTGACCCTGGGCTGCCCAGCATTCATGTGGAAGTGAAGGAAGG-AGGACTGGATCAATCCCATTTGAAAGCATCCGTCTCTGCAGCCCACACCATCCTCCAATGACAC--TGTAAGGATACTGCTTTGAGATCTATCAAAGGCTTTAAGTCAATGCATTTTCTGGGGTCTGGGAGTCCTGACATTCTGTGTCAGAATG-AAATCTTTCAAGtttct----------aaatgataaaactgcaggttcacaaagttccatggcttactcgaggtcacacagGGATGAGTTTTCAGCACTGCCAATAAAAGCAATCACAAtaattattcagtaattattcatatgatccatataattcagtaaatattcacataattatttagtaattattcaTTGACCAATTCATACAAGGCATTTTGTTCAAAACTGTGCTCATATTTGGACATTGTGTCTTCATCATAATCCTTAAGGCAATGCTATTATCCATAAGTAACAGGTAAGAAACCTGAAGAAGAGGGATAGCAAATCATGTGTTTGGCCATTATTTCC-------ATTTTTTGGTTTTTGTGATGCTGGAAGAATGAGCAGAATGAGTCACGGGAAAAGAGTTCATTCCTGTATCATTTTCCAGGACAGAGTTGTGCCTTCCTAGAGTACTGGGACCAAAATTCCCAAGTGTCTGCAACCTTGCTTTAACAGTATGGGAAATAACCTCTATC---------ACCTGGAATTTCCCTGGAACTTTGGAATATGCAAGAGAAGTATGAGACTTGGGTCT-------------TCCCT----TG----TGTTTAGTTCACTCTTCTATGGAATACCAATGATTCTCACTAA--GATTTT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211909283 1043 + 227556264 ACGGTCAGGGTTGGCTGGTGATCCTCAGTG-----GTGCA--GCAGAAGGTGAGTTTGAGATGAGAGGAATGAGTAGGAAAGAGCAATCCCCTGAGCCACCTCCTCACTTTCTCAGCTTCCATCCCCACCGAGGTTTTGTGAGCCTGGAACTTGGGAGACTGTTCTGTAGCCCAGGTCTCCTAGGATTGGCTG----CTGGACTTGCCTGAGTTGTGGGTGCACTGGGTGTGATCCTGGGCCGCTCAGCATTCATGTGGAAGTGAAGGAACG-AGGACTGGATCAATCCCATTTGAAGGCGTGCCTCACTGCAGCCCGCACTGTCCTCCAATGACAC--TGGAAGGATACTGCTTTGAGATGTATCAACAGCTTTAAGTAAATGTATTTTCCGGGGTCTGGGAGACCTGACGTTCTGTGTCATGATGAAAatctgtcaagtttcttcatttt-aaaaatgataaaactgcaggttcacaaagttacatggcttacttgaggtcacacagGGATGAGTTTTCAGCACTGCCAATAAAAGCAATCACAGTCATTATTCAGTCATTATTGATAGGATCCACATAATTCAGTAAATATTCACATAATTATTTAGTAGatattcactgaccaattcatacaaggcattttgctcaaaactgtgctcatatttggacgttgtatcttcaccataatccttaaggtaatgctattatccatacgtaacaggtaagaaacctgaagaagagggaTAGCAAAGCATGTATGTGGACA-TATTTCC-------ATTTTTTGGTTTTTGTGATGCTAGAAGAAAGACCAGAATGAGTCACAGGAAGAATATACATACCTGGATTATTTTCCAGGACAGAGGTGTGCCCTCCTAGAGGACTGGGACCAAAATTCTCAAGTGTCTGAAACCTTGCTTTAACATTATGGGAAATAACCTCTATC---------ACCTGGAATTTCCCTGAAACTTTGGAATATACAAGAGAAGTATGAGACTTGGGTCT-------------TCCCTTGGCTG----TGTTTAATTCAGTCTTCTATGGAATACCAATGATTCTCACTAA--GACTTT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11416937 1029 -  14060431 CTGGTTAGGGTTGGTTGGTGATCCTCAGTGTTGCTGTGCA--ATAGAAGGTGAGTTTGAGGTGAGAGGAATGAGTAGGAAAGAGTGATCCCCTGAACCACCTAATCACTTTCTCAGCTTTCATTCCCACCTAGGTTTTGTGAGCCTGGAACTTGGGAGACTGTCCTGTAGCCCGGGTCTGCTAAGATTGGCTG----GTGGACTTGCCTGAGTTGAGGGTGCAGTGGGTGTAACCCTGGGCTGCCCAGCATTCATGTGGAAGTGAAGGAAGG-AGGACTGGATCAATCCCATTTGAAAGCATCCGTCTCTGCAGCCCACACCATCCTCCAATGACAC--TGTAAGGATATTGCTTTGAGATGTATCAAAGGCTTTAAGTCAATGCATTTTCTGGGGTCTGGGAGATCTGACATTCTGTGTTAGAATGAAAATCTGTCAAGT----------------atgataaaactgcaggttcacaaagttacatggcttacttgaggtcacacagGGATGAGTTTTCAGCACTGCCAATAAAAGCAATCACAATAATTATTCAGTAATTATTCATAGGATCCATATAATTCAGTAAATATTCACATAATTATTTAGTAATTattcattgaccaatttgtacaaggcattttgttcaaaactgtgctcatatttggacattgtatcttcatcataatccttaaggtaatgctattatccatatgtaacaggtaagaaacctgaagaagagggaTAGCAAATCATGTGTTTGGCCA-TATTTCC-------ATTTTTTGGTTTTTGTGATGCTGGAAGAATGAACAGAATGAGTTACAGGAAGAGAATTCATTCCTGAATTATTTTCCAGGACAGAGGTGTGCCCTCCTAGAGTACTGGGACCAAAATTCCCAAGTGTCTGCAACCTTGCTTTAACAGTATGGGAAATAACCTCTATC---------ACCTGGAATTTCCCTGGAACTTTGGAATATGCAAGAGAAGTATGAGACTTGGGTCT-------------TCCCT----TG----TGTTTAATTCACTATTCTATGGAATACCAATGATTCTCACTAA--GATTTT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1828303 1030 -   2461138 CCGGTCAGGGTTAGTTGGTGATCCTCAGTGTTGCTGTGCA--GT---AGGTGAGTTTGAGGTGAGAGGAATGAGCAGGAAAGAATGACCCCCTGAACCACCTCCTCACTTTCTCAGCTTTCATTCCCACCTAGGTTTTGTGAGCCTGGAACTTGGGAGACTGTTCTGTAGCCCGGGTCTCCTCAGTTTGGCTG----CTGGACTTGCCTGAGTTGAGGGTGCAGTGGGTGTGACCCTGGGCTGCCCAGCATTCATGTGGAAGTGAAGGAAGG-AGGACTGGATCAAT-CCATTTGAAAGCATCCGTCTCTGCAGCCCACACCATCCTCCAATGACAC--TGTAAGGATACTGCTTTGAGATCTATCAAAGGCTTTAAGTCAATGCATTTTCTGGGGTCTGGGAGACCTGACATTCTGTGTCAGAATG-AAATCTTTCAAGtttct----------aaatgataaaactgcaggttcacaaagttacatggcttacatgaggtcacacagGGATGAGTTTTCAGCACTGCCAATAAAAGCAATCACAATAATTATTCAGTAATTGTTCATAGGATCCATATAATTCAGTAAATATTCACATAATTATTTAGTAATTATTCATCGACCAATTCATACAAGGCATTTTGTTCAAAACTGTGCTCATATTTGGACATTGTATCTTCATCATAATCCTTAAGGTAATGCCATTATTCATAAGTAACAGGTAAGAAACCTGAAGAAGAGGGATAGCAAAGCATGTATGTGGACA-TATTTCC-------ATTTTTTGGTTTTTGTGATGCTGGAAGAATGACCAGAATGAGTCACAGGAAGAATATACATACCTGGATTATTACCCAGGACAGAGGTGTGCCCTCCTAGAGTACTGGGACCAAAATTCTCAAGTGTCTGAAACCTTGCTTTAACATTATGGGAAATAACCTCTATC---------ACCTGGAATTTCCCTGGAACTTTGGAATATGCAAGAGAAGTATGAGACTTGGGTCA-------------TCCCT----TG----TGTTTAATTCACTCTTCTATGGAATACCAATGATTCTCACTAA--GACTTT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1028128 1031 -   1280666 CTGGTCAGGGCTGGTTGGTGATCCTCAGTGTTGCTGTGCA--GT---AGGTGAGTTTGAGGTGAGAGGAATGAGCAGGAAAGAGTGACCCCCTGAACCACCTCCTCACTTTCTCAGCTTTCATTCCCACCTAGGTTTTGTGAGCCTGGAACTTGGGAGACTGTTCTGTAGCCCGGGTCTCCTCGGTTTGGCTG----CTGGACTTGCCTGAGTTGAGGGTGCAGTGGGTGTGACCCTGGGCTGCCCAGCATTCATGTGGAAGTGAAGGAAGG-AGGACTGCATCAAT-CCATTTGAAAGCATCCCCCTCTGCAGCCCCCACCATCCTCCAATGACAC--TGTAAGTATACTGCTTTGAGATCTATCAAAGGCTTTAAGTCAATGCATTTTCTGGGGTCTGGGAGACCTGACATTCTGTGTTAGAATGAAGATCTTTCAAGtttct----------aaatgataaaactgcaggttcacaaagttacatggcttactcgaggtcacacagGGATGAGTTTTCAGCACTGCCAATAAAAGCAATCACAACaattattcagtaattattcatatgatccatataattcagtaaatattcacataattatttagtaattattcaTTGACCAATTCATACAAGGCATTTTGTTCAAAACTGTGCTCATATTTGGACATTGTGTCTTCATCATAATCCTTAAGGTAATGCTATTATCCATAAGTAACAGGTAAGAAA-CTGAAGAAGAGGGATAGCAAATCATGTGTTTGGCCATTATTTCC-------ATTTCTTTGTTTTTGTGATGCTGGAAGAATGAGCAGAATGAGTCACGGGAAGAGTATTCATTCCTGTATCATTTTCCAGGACAGAGGTGTGCCCTCCTAGAGTACTGGGACCAAAATTCCCAAGTGTCTGCAACCTTGCTTTAACAGTATGAGAAATAACCTCTATC---------ACCTGGAATTTCCCTGGAACTTTGGAATATGCAAGAGAAGTATGAGACTTGGGTCT-------------TCCCT----TG----TGTTTAATTCACTCTTCTATGGAATACCAATGATTCTCACTAA--GATTTT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             512599 1032 -   1325925 CCAGTCAGGGTTAGTTGGTGATCCTCAGTGTTGCTGTGCA--GT---AGGTGAGTTTGAGGTGAGAGGAATGAGCAGGAAAGAGTGACCCCCTGAACCACCTCCTCACTTTCTCAGCTTTCATTCCCACCTAGGTTTTGTGAGCCTGGAACTTGGGAGACTGTTCTGCAGCCCGGGTCTCCTCAGTTTGGCTG----CTGGACTTGCCTGAGTTGTGGGTGCACTGGGTGTGATCCTGGGCCGCTCAGCATTCATGTGGAAGTGAAGGAAGG-AGGACTGCATCAAT-CCATTTGAAAGCATCTGTCTCTGCAGCCCCCACCATCCTCCAATGACAC--TGTAAGGATACTGCTTTGAGATCTATCAAAGGCTTTAAGTCAATGCATTTTCTGGGGTCTGGGAGACCTGACATTCTGTGTCAGAATGAAAATCTTTCAAGtttct----------aaatgataaaactgcaggttcacaaagttacatggcttacttgaggtcacacagGGATGAGTTTTCAGCACTGCCAATAAAAGCAATCACAAtaattattcagtaattattcatatgatccatataattcagtaaatattcacataattatttagtaattattcaTCGACCAATTCATACAAGGCATTTTGTTCAAAACTGTGCTCATATTTGGACATTGTGTCTTCATCATAATCCTTAAGGTAAAGCTATTATCCATAAGTAACAGGTAAGAAACCTGAAGAAGAGGGATAGCAAATCATGTGTTTGGCCATTATTTCC-------ATTTTTTGGTTTTTGTGATGCTGGAAGAATGAGCAGAATGAGTCACAGGAAGAGAATTCATTCCTGTATTATTTTCCAGGACAGAGGTGTGCCCTCCTAGAGTACTGGGACCAAAATTCCCAAGTGTCTGCAACCTTGCTTTAACAGTATGGGAAATAACCTCTATC---------ACCTGGAATTTCCCTGGAACTTTGAAATATGCAAGAGAAGTATGAGACTTGGGTCT-------------TCCCT----TG----TGTTTAATTCACTCTTCTATGGAATACCAATGATTCTCACTAA--GACTTT
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197965264 1041 - 215897965 GTGGTCAGGGTTGGTTGGTGATCCTCAGCG-----GTGCA--GCAGAAGGGGAGTTTGACATGAGAGGAATGAGTAGGAAAGAGCAATCCCCTGAGCCACCTCCTCACTTTCTCAGCTTCCATCCCCACCGAGGTTTTGTGAGCCTGGAACTTGGGAGATTGTTCTGTAGCCCAGGTCTCCTAGGATTGGCTG----CTGGACTTGCCTGAGTTGTGGGTGCACTGGGTGTGATCCCGGGCCGCTCAGCATTCATGTGGAAGTGAAGGAACG-AGGACTGGATCAATCCCATTTGAAGGCGTGCCTCACTGCAGCCCGCACTGTCCTCCAATGACAC--TGTAAGGATACTGCTTTGAGATGTATCAACAGCTTTAAGTAGATGTATTTTCTGGGGTCTGGGAGACCTGACGTTCTGTGTCATCATGAAAatctgtcaagtttcttcatttt-aaaaatgataaaactgcaggttcaccaagttacatggcttacttgaggtcacacagGGATGAGTTTTCAGCACTGCCAATAAAAGCAATCACAGTCAGTATTCAGTCATTATTCCTAGGATTCGTATAATTCAGTAAATATTCCCATAATTATTTAGTAGatattcactgaccaattcgtataaggcattttgctcaaaac--tgctcatatttggacgttgtatcttcaccataatgcttaaggtcatgctattatccatacgtaacaggtaagaaacctgaagaagagggaTAGCAAAGCATGTACTTGGACA-TATTTCC-------ATTTTTTGGTCTTTGTGATGCTGGAAGAATGACCAGAATGAGTGACAGGAAGAGTAAACACACCTGGATTATTTTCCAGGACAGAGGTGTCCCCTCCTAGAGTACTGGGACCAAAATTCTCAAGTGTCTGAAACCTTGCTTTAATATTATGGGAAATAACCTCTATC---------ACCTGGAATTTCCCTGAAActttggaacatacaagagaagtatgagacttgggtct-------------tcccc----tGGCTGTGTTTAATTCACTCTTCTGTGGAATACCAATGATTCTCACTAA--GACTTT
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3750823 1038 -   3775709 GTGGTCAGGGTTGGTTGGTGATCCTCAGTG-----GTGCA--GCAGAAGGTGAGTTTGAGATGAGAGGAATGAGTAGGAAAGAGCAATCCCCTGAGCCACCTCCTCACTTTCTCAGCTTCCATCCCCACCAAGCTTTTGTGAGCCTGGAACTTGGGAGACTGTTCTGTAGCCCAGCTCTCCTAGGATTGGCTG----CTGGACTTGCCTGAGTTGTGGGTGCACTGGGTGTGATCCTGGGCCGCTCAGCATTCATGTGGAAGTGAAGGAAGG-AGGACTGGATCAATCCCATTTGAAGGCGTGCCTCACTGCAGCCCGCACTGTCCTCCAATGACAC--TGTAAGGATACTGCTTTGAGATGTATCAACAGCTTTAAGTAAATGTATTTTCCGGCTTCTGGGAGACCTGACGTTCTATGTCATAATGAAAatctgtcaagtttcttcatttt-aaaaatgataaaactgcaggttcacaaagttacatggcttacttgaggtcacacagGGATGAGTTTTCAGCACTGCCAGTAAAAGCAAT--CAGTCATTATTTAGTCAGTATTCCTAGGATCCATATAATTCAGTAAATATTCCCATAAATATTTAGTAGATATTCACTGACCAATTCGTACAAGGCATTTTGCTCAAAACTGTGCTCATATTTGGACGTTGTATCTTCACCATAATGCTTAAGGTAATGCTATTATCCATACGTAACAGGTAAGAAACCTGAAGAAGAGGGATAGCAAATCATGTATTTGGACA-TATTTCC-------ATTTTTTGGTTTTTGTGATGCTGGAAGAATGACCAGAATGAGTCACAGGGAGAGTAAACATACCTGGATTATTTTCCAGGACAGAGGTGTGCCCTCCTAGCGTACTGGGACCAAAATTCTCAAGTGTCCGAAACCTTGCTTTAATATTATGGGAAATAACCTCTATC---------ACCT-GAATTTCCCTGAAACTTTGGAATATACAAGAGAAGTATGAGACTTGGGTCT-------------TCCCT----TGGC--TGTTTAATTCACTCTTCCATGGAATACCAATGGTTCTCATTAA--GACTTT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3661931  999 +  47448759 ATGGTC-GGGGTGGTTGATGGTCCTCAGTGTTCCTGTGCAGTGTAGAAGGTGAGTTTGGGATGAGAGAG-----------------------------ACCTCCTCACTTT---------------CACCTAGATATTGTGGGGCTCGCACTTGGGAGATTGTCCTGT-ACCCAGATCTCCTAAGTTTTGATG----CTGAACTTGCATGAGTTGAAGGTGTAATGAGGGTTA-CATGGGTTACTCAGCATTCAGGTAGAAGTGAAGAGAGGAAGGACTGGGTCAATCCCATTTGAAAACGTGCCTCTCAGCAGCCTGTACCATACTCCAGCTACACTGTGTAATGACAGTGCTTTGAGATGTATCAGAGGCTGTAAATAAAT-CAATTTTTGGTGTCTTACAGACCTGTCATTCTGTGTCAGAATGAAAatctgttaagtttcttcatttt-aaatatgatgaaattgcagcttcacaaagttacatggtttacttgagatcacacagtgaTGAGTTTTGAGCACTGCCAGTAAGAACAGTTACAATAATTAATCAGAAATTGTTTATAGAATCCACATAATTCAGTAG--ATTCACATAATTGTTTCATAATTATTCACTGACCAATTTGTACTAGGCATTTTGTTCAAAAGTTCACATGTAGCTGGATATCATATTTTCATCATAATCATTAACACAATGTTATCATCTGTAAGAAACAGGTAAAAAAACTGAAGAAGAGGGATAGCCAATCATATATTTGACCA-TATTTTC-------ATTTTTT--TTCCTGTGGTTCTGGTCAAATGACCAGTATGAGTCATGAGAAGAATATTCATTCTTGTATCATTTCCCAGAACCTAGGTGTGCCCTCCTAGACTATTGGGACCAAAATTCAGGCGTGTGTGC-ACCTTGCTTT-ACAGTGTGGGGAATAGCCTCTATC---------ACCTAGAATTTCCCTGGAATATTGGAATATACAAAAGAAGTATGAGACTTGGATCT-------------GCCCT----TGACTGTATTTAATTCACTCTTCTATTGAACAGCAATGATTCTCATTAGATGACT--
i calJac3.chr18                   C 0 I 2
s saiBol1.JH378257                  2813299 1062 -   4070394 ATGGTCAGGGGTGGTTGGTGGTCCTCCGGGTTGCTGTGCA--ATAGAAGGTGGATTTGAGATGACAGGAACGAGTAGGGAAGAGTGATCCCCTGAACCACCTCCTCACTTTCTCAGCTTTCATCGCCACCCAAGTTTTGTGAGCCTGGGACTTGGGAGACTGTTCTGT-GCCCAGGTCTCCTATGATTGGCTGCTTCCTGGGCTTGCCTGAGTTGAGGGTACAATGGGTATGACCCTGGGCTGCCCAGCATTCATGTGGAAGTGAAGCAAGG-AGGACTGGATCAAT--CATTGGAAAGCGTGCCTCTCTACAGCCCGCATCATCCTCCAGCAACAC--TGTAAGCATACTGCTTTCAGATACATCAAAGGCTTTATGTATATACATGTTCTGGTGTCTAGGAGGCCTGACATTCTGTGGCAGAAGGAAAatctgtcaggtttcttcattat-aaaaatgatgaaactgcaggttcaccaagttatgtggcttacttcaggtcacacagagagGAGTTTTGAGCACTGCCAATAAAAGCAATCCCAACAATTATTCCATAATTATTCATAGGATCCATGTCATTCAGTAAATATTCATATAATTATTCAGTAATTATTTGTTTACCAATTTGTACCAGGCATGTTGCTCAAAACTGCACATAT--TTGGACAGCATACCTTCATCATGATCCTCAAGATAACACTGTTATCC-TAAGAATCAGGTAAGAAACCTGAACGAGAGGGCTAGCAAATAATGAATTTGGCCA-TATTTCC-------ATTTTTTGGTTTCCGTGATGCTGGATTAATGACCAGAATGAGTTACCGGAAGAGTATTCATTCCGGTATCATCTTCCAGGACAGAAGTGTGCCCTCCTAGTATATTGGGACCAAAACTCAGAAGTGTCTGCAACCTTGCTTTAACAGCATGGAAAATAACCTCTATTTTCCATTAGACCTGGAATTTCCCTGGACCTTTGGAATATACAAGAGAAGTATGAGACTTGGGTATTTAACTTGACTTAATTCT----TGACTGTATTTAATTCTCTCTTCTATGGAATGCCAATGATTCTAA------GACt--
i saiBol1.JH378257                C 0 I 313
s cebCap1.NW_016108146v1             276248 1045 +    407294 ATGGTCAGGGGTGGTTG-TGGTCCTCCGTGTTGCTGTGCA--GTAGGAGGTGAATTTGAGATGACAGGAACGAGTAGGGAAGAGCGATCCCCTGAACCACCTCCTCACTTTCTCAGCTTTCATCGCCACCCAGGTTTTGTGAGCCTGGGACTTGGAAGACTGTTCTGTAGCCCACGTCTCCTATGTTTGGCTGCTTTCTGGGCTTGCCTGAGTTGAGGGTGCAATGGGTGTGACCCTGGGCTGCCCAGAATTCATGTGGAAGTGAAGCAAGG-AGGACTGGATCAATCCCATTGGAAAGCGTGCCTCTCTACAGCCCCCATCATCCTCCAGCAACAC--CGTAAGCATACAGCTTTGACATACATCAAAGGCTTTAGGTATATACATGTTCTGGGGTCTGGGAGGCCTGACATTCTGTGACAGAAGGAAAATCTGTCAGGTTTCTTCATTAT-AAAAATGATGAAACTGCAGGTTCACAAAGTTATG-GGCTTACTCGATATCTCAAAGAGCTGAGTTTTGAGAACAACTAATAAAAGCAATCACAACAATTTTTCCATAATTATTCATAGGATCCATGTCATTCTGTAAATATTCATACAATTATTCAGGAATTATTTGTTGATCAATTTGTACCAGGCATTTTGCTCAAAACTGTGCACATA-TTTGACAGAATATCTTCATCATAATCCTCAAGGTAACGCTGTTATCC-TAAGAATCAGGTATGAAACCTGAGCAAGAGGGCTAGCAAATCATGAATTTGGCCA-TATTTCC-------ATTTTTTGGTTTCTGTGATGCTGGACGAATGACCAGAATGAGTCACAGGAAGAGTATTCATTCCTGTATCATCTTCCAGGACAGAGGTGTGCCCTCCTAAATTATTGGGCCCAAAATTCAGAAGCATCTGCAACCTTGCCTTAACAGTGTGGGAAATATCCTCTATT---------ACCTGGAATTTCCCTGGACCTTTGGAATACACAAGAGAAGTATGAGATGTGGTCTT--------------CCCT----TGGCTATATTTATTTCTCTCTTCTATGGAATACCAATGATTTTCACTAA--GACT--
i cebCap1.NW_016108146v1          C 0 I 407
e otoGar3.GL873592                  8657981    0 -   9938236 C
e rhiBie1.NW_016834311v1               2140    0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=135.000000
s hg38.chr1_KI270711v1_random         31722 1 +     42210 G
s panTro5.chr1                    208016061 1 - 228573443 G
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208150064 1 - 229774977 G
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3820361 1 -   8455952 G
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    275868 1 +    297174 T
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103765047 1 - 225584828 T
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211910326 1 + 227556264 T
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11417966 1 -  14060431 T
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1829333 1 -   2461138 T
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1029159 1 -   1280666 T
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             513631 1 -   1325925 T
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197966305 1 - 215897965 T
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3751861 1 -   3775709 T
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3662932 1 +  47448759 T
i calJac3.chr18                   I 2 C 0
e otoGar3.GL873592                  8657981 0 -   9938236 C
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cebCap1.NW_016108146v1             277293 407 +    407294 I
e saiBol1.JH378257                  2814361 313 -   4070394 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=371227.000000
s hg38.chr1_KI270711v1_random         31723 49 +     42210 GCCTTTTCATAAGCACAATGTGCATTTTATGGAGAAGATTTTACACTTT
s panTro5.chr1                    208016062 49 - 228573443 GCCTTTTCATAAGCACAATGTGCATTTTATGGAGAAGATTTTACACTTT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208150065 49 - 229774977 GCCTTTTCATAAGCACAATGTGCATTTTATGGAGAAGATTTTACACTTT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3820362 49 -   8455952 GCCTTTTCATAAGCACAATGTGCATTTTATGGAGAAGATTTTACACTTT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    275869 49 +    297174 GCCTTTTTATAACCACAATGTCTGTTTTATGGAGAAGATTTTATACTTT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103765048 49 - 225584828 GCCTTTTTATAACCACAATGTATGTTTTATGGAGAAGATTTTACACTTT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211910327 49 + 227556264 GCCTTTTTATAACCACAGTGTATGTTTTACGGAGATGATTTTATACTTT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11417967 49 -  14060431 GCCTTTTTATAACCACAACGTATGTTTTATGGAGAAGATTTTACACTTT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1829334 43 -   2461138 GCCTTTTTATAACCACAGTGTATGTTTTAT------GATTTTACACTTT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1029160 49 -   1280666 GCCTTTTTATAACCACAATGTATGTTTTATGGAGAAGATTTTACACTTT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             513632 49 -   1325925 GCCTTTTTATAACCACAATGTATGTTTTATGGAGAAGATTTTACACTTT
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197966306 49 - 215897965 GCCTTTTTATAACCACGGTGTATGTTTTATGGAGATGATTTTACACTTT
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3751862 49 -   3775709 GCCTTTTTATAACCACAGTGTATGTTTTATGGAGATGATTTTACATTTT
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3662933 49 +  47448759 GCCTTTTTATAACAATGATATATATTTTATGGGGAAGATTTTACTCTTA
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2814674 49 -   4070394 GCCCTCTTATATCCACAATATATGTTTTATGAAGAAGATTTTACTAATA
i saiBol1.JH378257                I 313 C 0
e otoGar3.GL873592                  8657981  0 -   9938236 C
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cebCap1.NW_016108146v1             277293 407 +    407294 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=2183205.000000
s hg38.chr1_KI270711v1_random         31772 242 +     42210 GCTCTATTTAGAAAGAATAAATATGAGCAGTGGTTTAGGTTTTATGCCCTGGACTTAATATGTTTCTGATTCCTGTTTTGAGATTAAATTCTCATGTAAATAGAAAAATACTTATTATTTCTCATAAGGCCAAGTTTGTTATTAGTTTGAGTTTTTGAAGATGAAGCACAAACTTTTGATTTT-ATCTTTGTCTGTCTCTGTCAGCGCCACTCGTTGTCTCTCAGTATGACCTGGACTTG-CC--C-
s panTro5.chr1                    208016111 242 - 228573443 GCTCTATTTAGAAAGAATAAATATGAGCAGTGGTTTAGGTTTTATGCCCTGGACTTAATATATTTCTGATTCCTGTTTTGAGATTAAATTCTCATGTAAATAGAAAAATACTTATTATTTCTCATAAGGCCAAGTGTGTTATTAGTTTGAGTTTTTGAAGATGAAGCACAAACTTTTGATTTT-ATCTTTGTCTGTCTCTGTCAGCGCCACTCGTTGTCTCTCAGTATGACCTGGACTTG-CC--C-
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208150114 242 - 229774977 GCTCTATTTAGAAAGAATAAATATGAGCAGTGGTTTAGGTTTTATGCCCTGGACTTAATATGTTTCTGATTCCTGTTTTGAGATTAAATTCTCATGTAAATAGAAAAATACTTATTATTTCTCATAAGGCCAAGTTTGTTATTAGTTTGAGTTTTTGAAGATGAAGCACAAACTTTTGATTTT-ATCTTTGTCTGTCTCTGTCAGCGCCACTCGTTGTCTCTCAGTATGACCTGGACTTG-CC--C-
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3820411 243 -   8455952 GCTCTATTTAGAAAGAATAAATATGACCAGTGGTTTAGGTTTTATGCCCTGGACTTAATATATTTCTGATTCCTGTTTTGAGATTAAATTCTCATGTAAATAGAAAAATACTTATTATTTCTCATAAGGCCAAGTGTGTTATTAGTGTGAGTTTTTGAAGATGAAGCACAAACTTTTGATTTT-ATCTTTGTCTGTCTCTGTCAGCGCCACTCGTTGTCTCTCAGTATGACCTGGACTTGTCC--C-
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    275918 242 +    297174 GCTCTATTTAGAAAGAATAAATATGAGCAATGGTTTAGGTTTTATGTCCTGCACTTAATATTTTTTTGATTTCTGTTTTGAGATTAAATTCTCATGTAAATAGAAAAATACTTATTATTTCTTATAAGGCCAAGTTTGTTATTAGTTTGAGTTTTTGAAAATGAAGCTCAAACTTTTGATTTT-ATCTTTGTCTGTCCCCATCAGCACCACTCATTGTCTATCAGTATGACCTAGACTTG-CC--T-
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103765097 241 - 225584828 GCTCTATTTAGAAAGAATAAATATGAGCAATGGTTTAGGTTTCATGTCCTGGACTTAATATTTTTCTGATTTCTGTTTTGAGATTAAATTCTCATGTAAATAGAAAAATACTTATTATTTCTCATAAGGCCAAGTTTGTTATTAGTTTGAGTTTTTGAAGATGAAGCACAAACTTTTGATTTT-ATCTTTGTCTGTCCCCATCAGCGCCACTCATTGTCTCTCAGTATGACCTAGACTTG-CC----
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211910376 242 + 227556264 GCTCTATTTAGAAAGAATAAATATGAGCAACGGTTTAGGTTTTATGCCCTGGACTTAATATTTTTCTGATTCCTGTTTTGAGATTAAATTCTCATGGAAATAGAAAAATACTTATGATTTCTCATAAGGCCAAGTTTGTTATTAGTTTGAGTTTTTGAAGATGAAGCACAAACTTTGGATTTT-ACCTTTGTCTGTCCCCATCAACACCACTCATTCTCTCTCAGTATGACCTGGACTTGCCC----
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11418016 241 -  14060431 GCTCTATTTAGAAAGAATAAATATGAGCAATGGTTTAGGTTTCATGTCCTGGACTTAATATTTTTCTGATTTCTGTTTTGAGATTATATTCTCATATAAATAGAAAAATACTTATTATTTCTCATAAGGCCAAGTTTGTTATTAGTTTGAGTTTTTGAAGATGAAGCACAAACTTTTGATTTT-ATCTTTGCCTGTCCCCATCAGCGCCACTCATTGTCTCTCAGTATGACCTAGACTTG-CC----
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1829377 242 -   2461138 GCTCTATTTAGAAAGAATAAATATGAGCAATGGTTTAGGTTTCATGTCCTGGACTTAATATTTTTCTGATTTCTGTTTTGAGATTAAATTCTCATGTAAATAGAAAAATACTTATTATTTCTCATAAGGCCAAGTTTGTTATTAGTTTGAGTTTTTGAAGATGAAGCACAAACTTTTGATTTT-ATCTTTGTCTGTCCCCATCAGCGCCACTCATTGTCTCTCAGTATGACCTAGACTTG-CCC---
i cerAty1.NW_012001440v1          C 0 M 878
s chlSab2.chr20_KE148050v1_random   1029209 241 -   1280666 GCTCTATTTAGAAAGAATAAATATGAGCAATGGTTTAGGTTTCATGTCCTGGACTTAATATTTTTCTGATTTCTGTTTTGAGATTAAATTCTCACGTGAATAGAAAAATACTTATTATTTCTCATAAGGCCAAGTTTGTTATTAGTTTGAGTTTTTGAAGATGAAGCACAAACTTTTGATTTT-ATCTTTGTCTGTCCCCATCAGCACCACTCATTGTCTCTCAGTATGACCTAGACTTG-CC----
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             513681 241 -   1325925 GCTCTATTTAGAAAGAATAAATATGAGCAATGGTTTAGGTTTCATGTCCTGGACTTAATATTTTTCTGATTTCTGTTTTGAGATTAAATTCTCATGTAAATAGAAAAATACTTATTATTTCTTATAAGGCCAAGTTTGTTATTAGTTTGAGTTTTTGAAGATGAAGCACAAACTTTTGATTTT-ATCTTTGTCTGTCCCCATCAGCGCCACTCATTGTCTCTCAGTATGACCTAGACTTG-CC----
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197966355 242 - 215897965 GCTCTATTTAGAAAGAATAAATATGAGCAATGGTTTAGGTTTTATGCCCTGGACTTAATATTCTTCTGATTCCTCTTTTGAGATTAAATTCTCTTGGAAATAGAAAAATACTTATGATTTCTCCTAAGGCCACGTTTGTTATCAGTTTGAGTTTTTGAGAATGAAGCACAAACCTTGGATTTT-ACCTTTGTCTGTCCCCATCAACACCACCCATTCTCTCTCAGTATGACCTGGACTTG-CC-C--
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3751911 242 -   3775709 GCTCTATATAGAAAGAATAAATATGAGCAATGGTTTAGGTTTTATGCCCTGGACTTAATATTTTTCTGATTCCCCTATTGAGATTAAATTCTCATGGAAATAGAAAAATACTTATGATTTCTCATAAGGCCAAGTTTGTTATTAGTTTGAGTTTTTGAAGATGAAGCACAAACCTTGGATTTT-ACCTTTGTCTGTCCCCATCAACACCACTCATTCTCTCTCAGTATGACCTGGACTTG-CC-C--
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3662982 242 +  47448759 GCTCTATTTAGAAAGAATAAACATCAGCTATAGTTTAAGTTTTATGTTCTGGACTTAATATTTTC-TGATTTCTGTTTTGAGATTAAAGTGTTATGTAAATAGGAAAACACTTGTTATTACTTATAAGAGTAAATTAGTTACTAGTTTCAGTTTCTGAAGTGGAAGCAAAACCTTTTGTTTTTAATCTTTGATTATACCCATCAGCACTGCTCATTGTCTATCAGTATGACCTGGCCATG-CT---C
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2814723 239 -   4070394 GCTCTATTTAGAAAGAATAAATATGAGCTATAGTTTAGGGTTTATGCCCTGGACTTACTATTTTTATGATTTCTGTTTTGAGATTAAATTCTCACGTAAATAGAAAAATAC---TTATTGCTTATGAAAGGAAACTAGTTATTGGTTTGAGTTTTTGACACAGAAGCGCACACTTTTGACTTC-ATCTTTGTCTCTCCCCATCAGTGCCGCTCACTGTCTCCCAGTAGGACCTGGCCACG-CC---C
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             277700 239 +    407294 GCTCTATTTAGAAAGAATAAATATGAGCTATGGTTTAGGTTTTATGCCCTGGACTTACTCTTCCTATGATTTCTATTTTGAGATTAAATCCTCATGTAAATAGAAAAACAC---TTATTACTTATAAAAGCAAATTAGTTATTGGTTTGAGTTTTTGACACTGAAGCACACACTTTTGACTTT-ATCTTTGTCTGTCCCCATCAGTGCCGCTCACTGTCTCCCAGTATGACCTGGCCATG-CC---C
i cebCap1.NW_016108146v1          I 407 C 0
e otoGar3.GL873592                  8657981   0 -   9938236 C
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=869315.000000
s hg38.chr1_KI270711v1_random         32014  98 +     42210 CTGCACTTACCCTTGTCCTGCTGAACCATCTCCAT-GCACTGTCCAATTCCATCAGTGATTCGGGCTCCTTCC--AAGGCTCCCTGAAAAGGGCACAGAGA
s panTro5.chr1                    208016353  98 - 228573443 CTGCACTTACCCTTGTCCTGCTGAACCATCTCCAT-GCACTGTCCGATTCCATCAGTGATTCGGGCTCCTCCC--AAGGCTCCCTGAAAAGGGCACAGAGA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208150356 100 - 229774977 CTGCACTTACCCTTGTCCTGCTGAACCATCTCCAT-GCACTGTCCGATTCCATCAGTGATTCGGGCTCCTCCCCAAAGGCTCCCTGAAAAGGGCACAGAGA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3820654  98 -   8455952 CTGCACTTACCCTTGTCCTGCTGAACCATCTCCAT-GCACTGTCCGATTCCATCCGTGATTCGGGCTCCTCCC--AAGGCTCCCTGAAAAGGGCACAGAGA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    276160  98 +    297174 CTGCACTTAACCTCATCCTGCTGAGCCATCTCTGT-GCACTGTCCAATTCCATCAGTGATTCTGGCTCCTCCC--AAGGCTCCCTGAAATGGACATAGGGA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103765338  99 - 225584828 CTGCAGTTACCCTCGTCCTGCTGAGCCATCTCCTCAGCACTGTCCAATTCCATCAGTGATTCGGGCTCCTCCC--AAGCCTCCCTGAAATGGGCACAGGGA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211910618  98 + 227556264 CTGCACTTACCCGCGTCCTGCTGAAGCATCTCCAT-GCACTGTCCAATTCCATCAGTGACTCAGGCTCCTCCC--AAGGCTCCCTGAAATGGACACAGGGA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11418257  99 -  14060431 CTGCACTTACCCTCGTCCTGCTGAGCCATCTCCTCAGCACTGTCCAATTCCATCAGTGACTCAGGCTCCTCCC--AAGGCTCCCTGAAATGGACACAGGGA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1             761662  98 +   2461138 CTGCACTTACCCGTGCAGTGCTGAACCATCTCCAC-GCACTGTCCAATTCACTCAGTGATTTGGGCTCCTCTC--AAGGCTCCCTGAAATGGGTACAGGTC
i cerAty1.NW_012001440v1          I 13344 C 0
s chlSab2.chr20_KE148050v1_random   1029450  98 -   1280666 CTGCAGTTACCCTCGTCCTGCTGAGCCATCTCCTCAGCACTGTCCAATTCCATCAGTGATTCAGGCTCCTCCC--AAGGCT-CCTGAAATAGGCACAGGGA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             513922  98 -   1325925 CTGCAGTTACCCTCGTCCTGCTGAGCCATCTCCTCAACACTGTCCAATTCCATCAGTGATTTGGGCTCCTCCC--AAGCCT-CCTGAAATGGGCACAGGGA
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197966597  98 - 215897965 CTGCACTTACCCTCGTCCTGCTGAAGCATCTCCAT-GCACTGTCCAATTCCATCAGTGACTCAGGCTCCTCCC--AAGGCTCCCTGAAATGGACACAGGGA
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3752153  98 -   3775709 CTGCACTTACCCCCGTCCTGCTGAAGCATCTCCAT-GCACTGTCCAATTCCATCAGTGACTCAGGCTCCTCCC--AAGGCTCCCTGAAATGGACCCAGGGA
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3663224  98 +  47448759 TTCCACTTACCCTCATCCTGCTGAAGCATCTCCAC-ACACTGTTCAATTCCATCAGTGATTCATGCTCCTCCC--AAAGCTCCCTGAAATGGTTCCAGGTC
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2814962  98 -   4070394 CTGCACTTACCCTCGTCCTGCTCAACCATCTCCAT-GCACTGTCCAATTCCATCCGTGATTCAGGCTCCTCCC--AAGGCTCCCTGAAATAGGTACAGGTC
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             277939  97 +    407294 C-GCACTTACCCTCATCCTGCTCAACCATCTCCAT-GCACTGCCCAATTCCATCAGTGATTCAGGCTCCTCCC--AAGGCTCCCTGAAATGGGTACAGGGA
i cebCap1.NW_016108146v1          C 0 I 11
e otoGar3.GL873592                  8657981   0 -   9938236 C
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=47068.000000
s hg38.chr1_KI270711v1_random         32112 5 +     42210 TCAGG
s panTro5.chr1                    208016451 5 - 228573443 TCAGG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208150456 5 - 229774977 TCAGG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3820752 5 -   8455952 TCAGG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    276258 5 +    297174 TCAGG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103765437 5 - 225584828 TCAGG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211910716 5 + 227556264 TCAGG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11418356 5 -  14060431 TCAGG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1             761760 5 +   2461138 TCAGG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1029548 5 -   1280666 TCAGG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             514020 5 -   1325925 TCAGG
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197966695 5 - 215897965 TCAGG
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3752251 5 -   3775709 TCAGG
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3663322 5 +  47448759 TCAGG
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2815060 5 -   4070394 TTGGG
i saiBol1.JH378257                C 0 C 0
e otoGar3.GL873592                  8657981 0 -   9938236 C
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e cebCap1.NW_016108146v1             278036 11 +    407294 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=143399.000000
s hg38.chr1_KI270711v1_random         32117 16 +     42210 ACATTAGGCACATTCC
s panTro5.chr1                    208016456 16 - 228573443 ACGTTAGGCACATTCC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208150461 16 - 229774977 ACGTTAGGCACATTCC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3820757 16 -   8455952 ACGTTAGGCACATTCC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    276263 16 +    297174 ACGTCAGAAACATTCC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103765442 16 - 225584828 ACATCAGACACATTCC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211910721 16 + 227556264 ACGTCAGACACATTCC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11418361 16 -  14060431 ACGTCAGACACATTCC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1             761765 16 +   2461138 ATGTTGGACACATTTT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1029553 16 -   1280666 ACGTCAGACACATTCC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             514025 16 -   1325925 ACGTCAGACACATTCC
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197966700 16 - 215897965 ACGTCAGACACATTCC
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3752256 16 -   3775709 ACGTCAGACACATTCC
i colAng1.NW_012114988v1          C 0 I 2409
s calJac3.chr18                     3663327 16 +  47448759 ATGTCAGACACAATCC
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2815065 16 -   4070394 ACATCAGACACACTCC
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             278047 16 +    407294 AAATCAGACACATTCC
i cebCap1.NW_016108146v1          I 11 C 0
e otoGar3.GL873592                  8657981  0 -   9938236 C
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=1588198.000000
s hg38.chr1_KI270711v1_random         32133 216 +     42210 GGACACAAAGGCAACCCATACTGTAGAGTGGGCAGCTGTGTTTCCACTTCCCTAATATTC-CAGTGAT-GTCC-------TCAAACTGAAAGGAACACTTTCCCTTTTTAGGG-GTCTGTTCTTCATGTCTCAGTGCCTCTGATCTAGTCAACACAACTGTCCTGAATGTGAAAGAACTTGCTAAATTTCTAGTTTCTTGTTAGGTGGCTAAAATAGATTTATAAG
s panTro5.chr1                    208016472 223 - 228573443 GGACACAAAGGCAACCCATACTGTAGAGTGGGCAGCTGTGTTTCCACTTCCCTAATATTC-CAGTGAT-GTCCTAAAAAATAAAACTGAAAGGAACACTTTCCCTTCTTAGGG-GTCTGTTCTTCATGCCTCAGTGCCTCTGATCTAGTGAACACAACTGTCCTGAATGTGAAAGAACTTGCTAAATTTCTAGTTTCTTGTTAGGTGGCTAAAATACATTTATAAG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208150477 222 - 229774977 GGACACAAAGGCAACCCATACTGTAGAGTGGGCAGCTGTGTTTCCACTTCCCTAATATTC-CAGTGAT-GTCCTAAAAA-TAAAACTGAAAGGAACACTTTCCCTTCTTAGGG-GTCTGTTCTTCATGTCTCAGTGCCTCTGATCTAGTGAACACAACTGTCCTGAATGTGAAAGAACTTGCTAAATTTCTAGTTTCTTGTTAGGTGGCTAAAATACATTTATAAG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3820773 215 -   8455952 GGACACAAAGGCAACCCATAATGTAGAGTAGGCAGCTGTGTTTCCACTTCCCTAATATTC-CAGTGAT-GTCC-------TAAAACTGAAAGGAACACTTTCCCTTTTTAGGG-ATCTCTTCTTCATGTCTCAGTGCCTCTGATCTAGTGAACACAACTGTCCTGAATGTGAAAGAACTTGCTAAATTTCTAGTTTCTTGTTAGGTGGCT-AAATAGATTTATAAG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    276279 215 +    297174 AGACACAAAGGCAACCCAGACTGTAGAGCGGGCAGC--TGTTCCCACTTCCCTAATATTC-CAGTGATGGTCC-------TAAAACTGAAAGGAACACTTTCCCCTTTTAGGG-GTCTGTTCTTCCTGTCTCAGTGCCTCTGATCTAGTGAACACAACTGTCCTGTAAGTGAAAGAACTTGCTAAATTTCTGGTTTCTTGTTAGGTGGCTAGAATAGGTTTATAAG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103765458 216 - 225584828 AGACACAAAGGCAACCCACACTGTAGAGCAGGCAGCTGTGTTCCCACTTCCCTAATGTTC-CAGTGAT-GTCC-------TAAAACTGCAAGGAACACTTTCCCTTTTTAGGG-GTCTGTTCTTCTTGTCTCAATGCCTCTGATCTAGTGAACACAACTGTCCTGAAAGTGAAAGAACTTGCTAAATTTCTGGTTTCTTGTTAGGTGGCTAGAATAGATTTATAAG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211910737 208 + 227556264 AGACACAAAGGCAACCCATACTGTAGAGCAGGCAGCTGTGTTTCCACTTCCCGAATGTTC-CAGTGAT-GTCC-------TAAAACTGAAAGGAACACTTTCCCTTTTTAGGG-GTCTGTTCTTC--------ATGCCTCTGATCTAGTGAACATAACTGTCCTGAAATGGAAAGAGCTTGCTAAATTTCTGGTTTCTTGTTAGGTGGCTAGAATAGATTCATAAG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11418377 214 -  14060431 AGACACAAAGGCAACCCATACTGTAGAGCAGGCAGCTGTGTTCCCACTTCCCTAATGTTC-CAGTGAT-GTCC-------TAAAACTGCAAGGAACACTTTCCCTTTTTAGGC-GTCTGTTCTTC--GTCTCAATGCCTCTGATCTAGTGAACACAACTGTCCTGAAAGTGAAAGAACTTGCTAAATTTCTGGTTTCTTGTTAGGTGGCTAGAATAGATTTATAAG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1             761781 188 +   2461138 AGGTGCAAAAGCAACCCATACTGTAGAGTGGACAGCTGTGTTCTTACTTCCCTGAAGTTAGCAGTGAT-GTCT-------TAGGACAGGAAGGAATGCTTTCCATTTTTAGAA--------------------ATGCCTCTGG----------ACAACTCTCCTGAACATGAAAGAAACTGCTACATTTCTGATCTCATGTTAGATAGCTAGAATAGATTTATAAG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1029569 216 -   1280666 AGACACAAAGGCAACCCACACTGTAGAGCAGGCAGCTGTGTTCCCACTTCCCTAATGTTC-CAGTGAT-GTCC-------TAAAACTGAAAGGAACACTTTCCCTTTTTAGGG-GTCTGTTCTTCTTGTCTCAATGCCTCTGATCTAGTGAACACAACTGTCCTGAAAGTGAAAGAACTTGCTAAATTTCTGGTTTCTTGTTAGGTGGCTAGAATAGATTTATAAG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             514041 216 -   1325925 AGACACAAAGGCAACCCACACTGTAGAGCAGGCAGCTGTGTTCCCACTTCCCTAATGTTC-CAGTGAT-GTCC-------TAAAACTGCAAGGAACACTTTCCCTTTTTAGGG-GTTTGTTCTTCTTGTCTCAATGCCTCTGATCTAGTGAACACAATTGTCCTGAAAGTGAAAGAACTTGCTAAATTTCTGGTTTCTTGTTAGGTGGCTAGAATAGATTTATAAG
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197966716 208 - 215897965 AGACACAAAGGCAACCCATACTCTCGAGCAGGCAGCTGTGTTTCCACTTCCCTAATGTTC-CAGTGAT-GTCC-------TAAAACTGGAAGGAACACTTTCCCTTTTTAGGG-GTCTGTTCTTC--------ATGCCTCTGATCTAGTGAACACAACTGTCCTGAAATTGAAAGAGCTTGCTAAATTTCGGGTTTCTTGTTAGGTGGCTAGAATAGATTTATAAG
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3663343 217 +  47448759 AGATACAAAAGCAACACATACCTCAGAGCGGGCAGGTGGGTTCCCATTCTTCTGAGGTTGGCTGTCAT-GTCC-------TAGGTAAGGAAGGAATGCGTTCCCTTTTTAGGGGGTCTATTTGTCATGTCTCAGTGCCTGTGATCTAGTGAACACAACT-TCCTGAACATCAAAGAACGTGCTAAATGTTTGGTTTCTTGTTATGTGGCTGGAATAGAGTTATAAG
i calJac3.chr18                   C 0 C 0
s saiBol1.JH378257                  2815081 218 -   4070394 AGGCACAAAAGCAGCCCATACTGTAAAGCGGGCAGCTGTGTTCCTGCTTCCCTGAAGTTGCCAGTGAT-GTTC-------TAGGACAGGAAGAAACACTTTCCCTTGTTAGGGCGTCTCTTCTTCGTGTCTCAGGGCCTCTGATCTAGTGAACACAACTGTCCTCAATGTGAACGAACTTGCTAAATTCCTGGTTTCTTGCTAGGTGGCTAGAATAGATTTACAAG
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             278063 218 +    407294 AGGCACAAAAGCAACCCATATTGTAAAGCGGGCAGCTGTGTTCCCACTTCCCTGAAGTTGGCAGTGAT-ATCA-------GAGGACAGGAAGAAATACTTTCCCTTGTTAGGGGGTCTGTTCTTCATGTCTCAGGGCCTCTGATCTAGTGAACACAACTGTCCTGAATGTGAACAAACTTGCTAAATTCCTGGTTTCTTGCTAGGTGGCTAGAATAGATTTATAAG
i cebCap1.NW_016108146v1          C 0 C 0
e otoGar3.GL873592                  8657981   0 -   9938236 C
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=1387860.000000
s hg38.chr1_KI270711v1_random         32349 165 +     42210 ACTTCCTTACTTACCCATGACTGCTGAAGTTTGAATTCTTAGCAGTACGATTCGTTTTCTTGTAAGGTGAGCAGCTTAGGAAAGATTGGCCATCTTCCTGTGCAAAAAGAGGCAAACTTAATTTCTACTCAAAGCATGCTTGAATTTGGAATCA-GGGCTTCCACT
s panTro5.chr1                    208016695 165 - 228573443 ACTTCCTTACTTACCCATGACTGCTGAAGTTTGAATTCTTAGCAGTACGATTCTTTTTCTTGTAAGGTCAGCAGCTTAGGAAAGACTGGCCATCTTCCTGTGCAAAAAGAGGCAAACTTCATTTCTACTCAAAGCATGCTTGAATTTGGAATTA-GGGCTTCCACT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208150699 165 - 229774977 ACTTCCTTACTTACCCATGACTGCTGAAGTTTGAATTCTTAGCAGTACGATTCTTTTTCTTGTAAGGTCAGCAGCTTAGGAAAGACTGGCCATCTTCCTGTGCAAAAAGAGGCAAACTTCATTTCTACTCAAAGCATGCTTGAATTTGGAATTA-GGGCTTCCACT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3820988 165 -   8455952 ACTTCCTTACTTACCCATGACTGCTGAAGTTTGAATTCTTAGCAGTACGATTCTTTTTCTTGTAAGGTCAGCAGCTTAGGAAAGATTGGCCATCTTCCTGTGCAAAAAGAGGCAAACTTAATTTCTACTCAAAGCATGCTTGAATTTGGAATTA-GGGCTTCCACT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    276494 165 +    297174 ACTTCCTTACTTACCCATGACTGCTGAAGTTTGAATTCTTAGCAGTATGATTATTTTTCTTGTAAGATGAACAGCTTAGGAAAGATTGGCCATGTTGCTGTGCAAAAAGAGGTAAACCTAATTTCTATGCAAAGCATGCTTGAATTTGAAGCTA-GGGCTTCCATT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103765674 165 - 225584828 ACTTCCTTACTTACCCATGACTGCTGAAGTTTGAATTCCTAGCAGGACGATTCCTTTTTTTGTAAGCTGAGCAGCTTAGGAAAGATTGGCCATGTTACTGTGCAAAAAGAGGTAAACTTAATTTCTACTCAAAGCATGCTTGAATTTGAAACTA-GGGCTTCCACT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211910945 165 + 227556264 ACTTCCTTACTTACCCATGACTGCTGAAGTTTGAATTCCTAGCAGGATGATTCCTTTTCTTGTAAGGGGAGCAGCTTAGGCAAGATTGGCCATGTGGCTGTGCAAAAAGAGGTCAACTGAATTTCTACTCAAAGCATGCTTGAATTTGAAACTA-GGGCTTCCACT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11418591 164 -  14060431 ACTTCCTTACTTACCCATGACTGCTGAAGTTTGAATTCCTAGCAGGACGATTCCTTTTTTTGTAAGCTGAGCAGCTTAGGAAAGATTGGCCATGTTGCTGTGC-TAAAGAGGTAAATTTAATTTCTACTCAAAGCATGCTTGAATTTGAAACTA-GGGCTTCCACT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1             761969 165 +   2461138 ACCTCCTTACTTTCCCATGTCTGCTGAAGTGTGATTTCTTAGCAGTATGATTCCTTTTCTTATAAGCTGAGCAGCTTAGGAAAGATGGGCCATGTTGCTGTGCAAAAAGAGGTAAACTTAATTTCTACTCAAAGCATGCTTGAATTTGAAACTA-GGGCTTCCACT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1029785 165 -   1280666 ACTTCCTTACTTACCCATGACTGCTGAAGTTTGAATTCTTAACAGGATGATTCCTTTTTTTGTAAGCTGAGCAGCTTAGGAAAGATGGGCCATGTTGCTGTGCAAAAAGAGGTAAACTTAATTTCTACTCAAAGCAAGCTTGAATTTGAAACTA-GGGCTTCCACT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             514257 165 -   1325925 ACTTCCTTACTTACCCATGACTGCTGAAGTTTGAATTCCTAGCAGGACGATTCCTTTTTTTGTAAGCTGAGCAGCTTAGGAAGGATTGGCCATGTTACTGTGCAAAAAGAGGTAAACTTAATTTCTACTCAAAGCATGCTTGAATTTGAAACTA-GGGCTTCCACT
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197966924 165 - 215897965 ACTTCCTCACTTACCCATGACTGCTGAAGTTTGAATTCCTAGCAGTAGGATTCCTTTTCTAGTAAGGGGAGCAGCTTAGGCAAGATCGGCCATGTTGCTGTGCAAAAAGAGGTCAACTTAATTTCTACTCAAAGCATGCTTGAATTTGAAACTA-GGGCTTCCACT
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3663560 164 +  47448759 ACTTTTTTACTTACCCATGCCTGCTGAAGTTTGAATTCTTGGCAGTATGATTTTTTTTCTTGTGAGGTGATCAG-TTGCAGAAGATTGGCCCTGTTGCTTTGCCAA-AGAGCTAAACTTTATTTCAACTCAGAGCAAGCTTGAATTTGAAACTAGGGCCTTCTGCT
i calJac3.chr18                   C 0 I 1
s saiBol1.JH378257                  2815299 163 -   4070394 ACTTCCTGACTTACCCATGTGTGCTGAAGTCTGGATTCTTACCAGTATGATTCCTTTTCTTGTGAGGGG--CAGCTTAGGGAAGATTGGCCCCATTGCCATGCAAAGAGAGGTAAAGTGAATTTCTACTCAAAGCAACCTTGAATTTGAAACTA-GGTCTCCCACT
i saiBol1.JH378257                C 0 C 0
s cebCap1.NW_016108146v1             278281 163 +    407294 ACTTCCTTACTTACCCATGTTTGCTGAAGTCTGAATTCTTACCAGTATGATTCCTTTTCTTGTAAGGGG--TAGCTTAGGGAAGATTGGTCCCATTGCCATGCAAAGAGAGGTAAAGTGAATTTCTACTCGAAGCAACCTTGAATTTGAAACTA-GGTCTTCCACT
i cebCap1.NW_016108146v1          C 0 N 0
s otoGar3.GL873592                  8657981 157 -   9938236 ACTTCCTTACTTACACATTTCTACTGAAGTTCGAATTCTTAGTGGTATGATTCCTTTT-TTGTAAGGTGAGAGGCCTGGAAAGGAGTGGTCCCATCACTATG-AAGAAAAGGTAAACTTAATATCTGTTGAGAGCAAGCTTAA------AACTA-GGGCTTTTACT
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=273612.000000
s hg38.chr1_KI270711v1_random         32514 43 +     42210 CTTCCGAAGTTGGAGT-------------------------GTCACTGC---------------GACAGGCATGTGTCCCGAA
s panTro5.chr1                    208016860 43 - 228573443 CTTCCGAAGTTGGAGT-------------------------GTCACTGT---------------GACAGGCATGTGTCCCGAA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208150864 43 - 229774977 CTTCCGAAGTTGGAGT-------------------------GTCACTGT---------------GACAGGCATGTGTCCCGAA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3821153 43 -   8455952 CTTCCGAAGTTGGAGT-------------------------GTCACTGC---------------GACAGGCAAGTGTCCCGAA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    276659 43 +    297174 CTTCCAAAGTTGGACT-------------------------GTCACTGC---------------CTCAGGCATGTGTCCCGAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103765839 43 - 225584828 ATTCCAAAGTTGGACT-------------------------GTCACTGC---------------CTCAGGCATGTGTCCCGAA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211911110 43 + 227556264 CTTCCAAAGTTGGACG-------------------------GTCACTGC---------------CTCAGGCATGTGTCCCGAA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11418755 43 -  14060431 GTTCCAAAGCTGGACT-------------------------GTCACTGC---------------CTCAGGTATGTGTCCCGAA
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1             762134 43 +   2461138 CTTCCAAAGTTGGACT-------------------------GTCACTGC---------------CTCAGGCATGTGTCCCGAA
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1029950 43 -   1280666 GTTCCAAAGTTGGACT-------------------------GTCACGGC---------------CTCAGGCATGTGTCCCGAA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             514422 43 -   1325925 GTTCCAAAGTTGGACT-------------------------GTCACTGC---------------CTCAGGCATGTGTCCCGAA
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197967089 43 - 215897965 CTTTCAAAGTTGGACT-------------------------GTCACTGC---------------CTCAGGCATGTGTCCCGAA
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3663725 43 +  47448759 TTTTCAGTACTGGACT-------------------------GCCATTGT---------------CACTGACATGTGTCCAGAA
i calJac3.chr18                   I 1 M 476
s saiBol1.JH378257                  2815462 83 -   4070394 GTTTCAAAACTGGCCTATAGGTCCAACTGTGCACATATGTGGACGTCGTATCTTCATCAGAATCCTCAGGCATGTGTCCCCAA
i saiBol1.JH378257                C 0 C 0
s otoGar3.GL873592                  8658138 41 -   9938236 GTTTCAAAGT--AACT-------------------------GTCAGTGC---------------CTCAGGCACATGTCCTCAA
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=169856.000000
s hg38.chr1_KI270711v1_random         32557 24 +     42210 GGGCTCGTGTCTCTGCTATACTCA---
s panTro5.chr1                    208016903 24 - 228573443 GGGCTCGTGTCTCTGCTATACTCA---
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208150907 24 - 229774977 GGGCTCGTGTCTCTGCTATACTCA---
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3821196 24 -   8455952 GGGCTCGTGTCTCTGCTATACTCA---
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    276702 24 +    297174 GGGCTTATGTCTCTGCTGTACTCA---
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103765882 24 - 225584828 GGGCTCATGTCTCTGCTGTACTCA---
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211911153 24 + 227556264 GGGCTCGTGGCTCTGCTGTACTCA---
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11418798 24 -  14060431 GGGCTCCTGTCTCTGCTGTACTCA---
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1             762177 24 +   2461138 GGGCTTCTGTCTCTGCTTTACTCA---
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1029993 24 -   1280666 GGGCTCGTGTCTCTGCTGTACTCA---
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             514465 24 -   1325925 GGGCTCATGTCTCTGCTGTACTCA---
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197967132 24 - 215897965 GAGCTCGTGGCTCTGCTGTACTCA---
i nasLar1.chr1                    C 0 C 0
s saiBol1.JH378257                  2815545 24 -   4070394 GGGCTTGTGTGTCTGCTGTACTCA---
i saiBol1.JH378257                C 0 N 0
s otoGar3.GL873592                  8658179 27 -   9938236 GGGCTTGTGTCTCTGCTGTACTCCAGG
i otoGar3.GL873592                C 0 C 0
e calJac3.chr18                     3663768 476 +  47448759 M
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=156120.000000
s hg38.chr1_KI270711v1_random         32581 30 +     42210 AA-----GTTTAAATGGAGCCC-AGCAAGCCAGA------TG
s panTro5.chr1                    208016927 30 - 228573443 AA-----GTTTAAATGGAGCCC-AGCAAGCCAGA------TG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208150931 30 - 229774977 AA-----GTTTAAATGGAGCCC-AGCAAGCCAGA------TG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3821220 30 -   8455952 GA-----GTTTAAATGGAGCCC-AGCAAGCCAGA------TG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    276726 35 +    297174 AAATAAGGTTTAAATGGAGCCC-AGCAAGCCAGA------TC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103765906 35 - 225584828 AAATAAAGTTTATATGCAGCCC-AGCAAGCCAGA------TC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211911177 41 + 227556264 AAATAAAGTTTAAATGGAGCCC-AGCAAACCAGATCTCCTTC
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11418822 35 -  14060431 AAATAAAGTTTAAATGGAGCCC-AGCAAGCCAGG------TC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1             762201 35 +   2461138 GGATAAAGTTTAAATGGAGCCC-AGCAAGCCAGG------TC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1030017 35 -   1280666 AAATAAAGTTTAAATGGAGCCC-AGCAAGCCAGA------TC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             514489 35 -   1325925 AAATAAAGTTTATATGCAGCCC-AGCAAGCCAGA------TC
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197967156 41 - 215897965 AAATAAAGTTTAAATGGAGCCC-AGCAAGCCAGATGTCCTTC
i nasLar1.chr1                    C 0 C 0
s otoGar3.GL873592                  8658206 31 -   9938236 -----AAGTAAAAATGAGGCCCAAATGAGCCAGG------TC
i otoGar3.GL873592                C 0 C 0
e calJac3.chr18                     3663768 476 +  47448759 M
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=2730134.000000
s hg38.chr1_KI270711v1_random         32611 399 +     42210 TCCTTTACTTCTA-GGTTCCCTCAACAGTTTCTCCTCCGCTTTAGAGACCGCATTGAAAATATTCTTGT----------TCTGCTGCTGTGTTTTGGCTTTGGAATGATGTGATGCAGCTCAATGGG-TCCCACCCCCAACTTGATCAAAGTAagaaacagctggg-aaagtcagtgcaaat------------------acaagttcattgtcctccttgcagggattctgattcagagggctcaggtggggcctggaatgtgtttgttaacatgactcagatgtgcagtcaatttggggactcactGACAGCATTGACCTTACAGTTTATGGGATGATTCTT---------------------------------------------------------TCTG-TTTGGTgatgaagaaactgaggcacacagagtctgtaacttgcccaagttccccttgttgtaagtcctggagccagatctca
s panTro5.chr1                    208016957 400 - 228573443 TCCTTTACTTCTA-GGTTCCCTCAACAGTTTCTCCTCTGCTTCAGAGACTGCATTGAAAATATTCTTGT----------TCTGCTGTTGTGTTTTGGCTTTGGAATGATGTGATGCAGCTCAATGGG-TCCCACCCCCAAGTTGATCAAAGTAagaaacagctgga-aaagtcagtgcaaat------------------acaagttcattgtcctccttgcagggattctgattcagagggctcaggtggggcctggaatgtgtttgttaacatgactcagatgtgcagtcaatttggggactcactgacagcattgaccttacagtttatgggatgattctt---------------------------------------------------------tctgttttgctgatgaagaaacggaggcacacagagtctgtaacttgcccaagttccccttgttgtaagtcctggagccagatctca
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208150961 399 - 229774977 TCCTTTACTTCTA-GGTTCCCTCAACAGTTTCTCCTCTGCTTCAGAGACTGCATTGAAAATATTCTTGT----------TCTGCTGTTGTGTTTTGGCTTTGGAATGATGTGATGCAGCTCAATGGG-TCCCA-CCCCAAGTTGATCAAAGTAagaaacagctgga-aaggtcagtgcaaat------------------acaagttcattgtcctccttgcagggattctgattcagagggctcaggtggggcctggaatgtgtttgttaacatgactcagatgtgcagtcaatttggggactcactGACAGCATTgaccttacagtttatgggatgattctt---------------------------------------------------------tctgttttgctgatgaagaaacggaggcacacagagtctgtaacttgcccaagttccccttgttgtaagtcctggagccagatctca
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3821250 400 -   8455952 TCCTTTACTTCTA-GGTTCCCTCAACAGTTTCTCCTCTGCTTCAGAGACTGCATTGAAAATATTCTTGT----------TCTGCTGTTGTGTTTTGGCTTTGGAATGATGTGATGCAGCTCAATGGG-TCCCACCCCCAAGTTGATCAAAGTAagaaacagctggg-aaagtcagtgcaaat------------------acaagttcattgtcctccttgcagggattctgattcagagggctcaggtggggcctggaatgtgtttgttaacatgactcagatgtgcagtcaatttggggactcactGACAGCATTgaccttacagtttttgggatgattctt---------------------------------------------------------tctgttttgctgatgaagaaactgaggcagacagagtctgtaactggcccaagttccccttgttgtaagtcctggagccagatctca
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    276761 415 +    297174 TCCTTTACTTCTA-GGTTCCCACAACAGTTTCTCCTCTGCTTTAGAGACTGCATTGAAAATATTCTTGT----------CCTGCTGTTGTGTTTTGGCTTTGGAATGATGTGATGCAGCTCAATGCG-TCCTACCCCCAAGTTGATCAGAGTAAGAAACACCTGGGAAAAGTCAGTGCAAATGTTCATTTGCACTGGAGGACAAGTTCGTTGTCCTCCTTGAAGGGATTTGGATTCAGAGGGCTCAGGTGGGGCCTGGAATGTGTCTGTTAACATGACTCAGATGTGCAGTCAATTTGGGGACCCACTGATAGCATCGACCTTACAGTTTATGGGATGA----T---------------------------------------------------------Tctgttttgctgatgaaaaaactgaggcacagagagtctgtaactttcctaaattctccttgctgtaagtcctggagccagatctca
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103765941 400 - 225584828 TCTTTCATTTCTA-GGTTCCCTCCACAGTTTCTCCTCTGCTTTAGAGACTGCATTGAAAATATTCTTGT----------TCTGCTGTTGTGTTTTGGCTTTGGAATGATGTGATGCAGCTCAATGGG-TCCTACCCCCAAGTTGATCAGAGTAagaaacacctggg-gaagtcagtgcacat------------------acaagttcattgtcctccttgcagggattctgattcagaaggctcaggtggggcctggaatgtgtttgttaacatgactcagatgcgcagtcaatctggggaccTGCTGATAGCATCgaccttacagtttatgggatgattcct---------------------------------------------------------tctgttttgctgatgaagaaactgaggcacacagagcctgtaacttgcccaagttccccttgctgtaagtcctggagccagatctca
i rheMac8.chr1                    C 0 I 45
s macFas5.chr1                    211911218 400 + 227556264 TCCTTTACTTCTA-GGTTCCCTCAATAGTTTCTCCTCTGCTTTAGAGACTGCATTGAAAATATTCTTGT----------TCTGCTGTTGTGTATTGGCTTCGGAATGATGTGATGCAGctcaatggg-tcctacccccaacttcatcaaagtaagaaacagctggg-aaagtcagtgcaaat------------------acaagttcagtgtcctccttgcagggattctgattcagagggctcaggtggggcctggaatgtgtttgttaacatgactcggatgtgcactgaatttggggacccactgATAGCACTGACCTTACAGTTGATGGGatgattctt---------------------------------------------------------tctgttttgctgatgaagaaactgaggcacagagagtctgtaacttgcccaagttccccttgctgtaagtcctggagccagATCTCA
i macFas5.chr1                    C 0 I 46
s macNem1.NW_012017688v1           11418857 389 -  14060431 TCCTTTACTTCTA-GGTTCCCTCAACAGTTTCTGCTCTGCTTTAGAGACTGCATTGAAAATATTCTTGT----------TCTGCTGCTGTGTTTTGGCTCTGGAATGATGTGATGCAG------------CTACGCCCAAGTTGATCAGAGTAagaaacacctggg-aaagtcagtgcacat------------------acaagttcattgtcctccttgcggggattctgattcagaaggctcaggtggagcctggaatgtgtttgttaacatgactcggatgtgcactgaatttggggacccactGATAGCACTGACCTTACAGTTGATgggatgattctt---------------------------------------------------------tctgttttgctgatgaagaaactgaggcacagagagtctgtaacttgcccaagttccccttgctgtaagtcctggagccagatctca
i macNem1.NW_012017688v1          C 0 I 45
s cerAty1.NW_012001440v1             762236 397 +   2461138 TCCTTTACTTCTA-GGTTCCCCCAACAGTTTCTGCTCTGCTTTAGGGACTGCATTGAAAATATTCTTGT----------TGTGCTGTTGTGTTTTGGCTTCGGAATGATGTGATGCAGCTCAATGGG-TCCTACCCCCAAGTTGATCAGAGTAAGAAACACCTGGG-AAAGTCAGTGCAAAT------------------ACAATTTCATTGTCCTTCTGGCATGAATTTTGATTCTGTGGGCTCAGGTGGGGCCTGGAATGTGT---TTAACATGACTGAGATGTGCAGTCAGTTTGGGGACCCACTGATACCATCGACCTTACAGTTTATgggatgattctt---------------------------------------------------------tctgttttgctgatgaaaaaaccaaggcacagagagtctgtaacttgcccaagttccccttgctgtaagccctggagtcagatctca
i cerAty1.NW_012001440v1          C 0 I 163
s chlSab2.chr20_KE148050v1_random   1030052 389 -   1280666 TCCTTTACTTCTA-GGTTCCCTCCACAGTTTCTACTCTGCTTTAGAGACTGCATTGAAAATATTCTTGT----------TCTGCTGTTGTGTTTTGGCTTTGGAATGATGTGATGCAG------------CTACCCCCAAGTTGATCAGAGTAagaagcacctggg-aaagtcagtgcacat------------------acaagttcattgtcctccttgaagggattctgattcagaaggctcaggtggggcctggaatgtgtttgttaacatgactcagatgcgcagtcaatctggggaccCGCTGATAGCATCgaccttacagtttatgggatgattcct---------------------------------------------------------tctgttttgctgatgaagaagctgaggcacagagagtctgtaacttgcccaagttccccttgctgtaagtcctgaagccagatctca
i chlSab2.chr20_KE148050v1_random C 0 I 45
s manLeu1.NW_012105087v1             514524 400 -   1325925 TCTTTCATTTCTA-GGTTCCCTCCACAGTTTCTCCTCTGCTTTAGAGACTGCATTGAAAATATTCTTGT----------TCTGCTGTTGTGTTTTGGCTTTGGAATGATGTGATGCAGCTCAATGGG-TCCTACCCCCAAGTTGATCAGAGTAagaaacacctggg-aaagtcagtgcacat------------------acaagttcattgtcctccttgcagggattctgattcagaaggctcaggtggggcctggaatgtgtttgttaacaTGACTTAGATGCGCAGTCCATCTGGGGACCCGCTGATAGCATCgaccttacagtttatgggatgattcct---------------------------------------------------------tctgttttgctgatgaagaaactgaggcacacagagcctgtaacttgaccaagttccccttgctgtaagtcctggagccagatctca
i manLeu1.NW_012105087v1          C 0 I 45
s nasLar1.chr1                    197967197 400 - 215897965 TCCTTTACTTCTA-GGTTCCGTCAACAGTTTCTCCTCTGCTTTAGAGACTGCATTGAAAATATTCTTGT----------TCTGCTGTTGTGTATTGGCTTTGGAATGATGTGATGCAGCTCAATGGG-TCCTATCCCCAACTTCATCAAAGTAagaaacagctggg-aaagtcggtgcaaat------------------acaagttcattgtcctccttgcagggattctgattcagagggctcaggtggggcctggaatgtgtttgttaacacgactcggatgtgcattgaatttggggacccactGATAGCACTGACCTTACAGTTGATGGGatgattctt---------------------------------------------------------tctgttttgctgatgaagaaactgaggcacagagagtctgtaacttgcccaaattccccttgctgtaagtcctggagccagATCTCA
i nasLar1.chr1                    C 0 I 46
s calJac3.chr18                     3664246 399 +  47448759 TCCTTCACTTCTAGGGTTCCCCCAATGGTTTCTCTTCAGCTGTACTGACTGCATTGAAAATATTTTTGC----------TCTGCTTTTGTGTTGTGG-TTTGGAATAATATGATGCAGCTCAGTTTGTTCCCAACCCCAAGTTGATCAGAGTAAGAAACACCTGGG-AAGGTCAGTGATAAT------------------ACAAGTTTATTGTCCTTCTTGCAGGGA-TCTTATTCAGTGGGCTCAAGTGGGGACTGGAAGGTGTTTGTTTGCCTGATTCAGATGTGCAGTCAGTTTGGGGACCCTCTGATACCATGAACCTTACAGTTGATGGGA-Gattctt---------------------------------------------------------tctgttttgttggtgatgaaaccaaggcacagagggtctgtaacttgcccaagtttcctttgctgtaagtactggagaaagatctca
i calJac3.chr18                   M 476 I 46
s otoGar3.GL873592                  8658237 465 -   9938236 CCTTTCATTCCTA-GAGTCCCCTAACAATTTCTTAGCTGTTTTAGAGACTGGATTGAAAATCTTTTTGTTGTTCTTTGCTCTGCTTTTATGTTTTACCATTGGGAGAATGTTATATAGCTcagtggt-tcctacccccaaactgatcatagtaagaaacacctggg-aaagttagtgcaaac------------------acaagttcttagtcctcattgccacaattctgattcagtggccttcagtgggtcctgcaatgtatttgttaatattacttaggtgtgcagtcagtttgggggcccactGATATCAT-Gaccttacagtttatggaatgatttttcatatatattattgcttttgattttcacaatcagtgggtgaggagacattgctttcccctgttttgctgatgaagaaacccaagcacagaaagtctgtaactaacccagg-tcTGCTTATTCTAAGCACTGGAGTCAGATCTCA
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=379070.000000
s hg38.chr1_KI270711v1_random         33010  90 +     42210 ggtGGACCA-------------------------------------------------------GTGCTTCTCTCCCCTATACCTCATTTCTG-----AGAAAAGGAAATCTTCTG--------GAATTTGACTTCTTTCATCTAACACATTTCCTCA
s panTro5.chr1                    208017357  90 - 228573443 ggtggacca-------------------------------------------------------gtgcttctctcccctatacctcattTCTG-----AAAAAAGGAAATCTTCTG--------GAATTTAACTTCTTTCATCTAACACATTTCCTCA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208151360  90 - 229774977 ggtggacca-------------------------------------------------------gtgcttctctcccctatacctcattTCTG-----AAAAAAGGAAATCTTCTG--------GAATTTAACTTCTTTCATCTAACACATTTCCTCA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3821650  90 -   8455952 ggtggacca-------------------------------------------------------gtgcttctctcccctatacctcattTCTG-----AAAAAAGGAAATCTTCTG--------GAATTTGACTTCTTTCATCTAACACATTTCCTCA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    277176 153 +    297174 ggtGGAGCAGCCTCTTCCCCATCTCCTTCCCACATTTTCAGCTGGGTCAGTTCTTTCCAAGTACGTGTTTCTCTCCCCTATACCTCATTTCTG-----AAAAAAGGAAAACTTCCGGAATGTAAGAATGTAACCTCTTTCATCTAATACATTTCCTCA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103766386 103 - 225584828 GCTGGGTCA----------------------------------------GTTCTTTCCAAGTACGTGTTTCTCTCCCCTATACCTCATTTCTG----AAAAAAAGGAAAA---CTG--------GAATTTAACTTCTTTCATCTAATATATTTCCTCA
i rheMac8.chr1                    I 45 C 0
s macFas5.chr1                    211911664 105 + 227556264 GCCGGGTCA----------------------------------------GTTCCTTCCAAGTGCATGTTTCTCTCCCCCATATCTCATTTCTG-----AAAAGAGGAAAACTTCTG--------GAATTTAACTTCTTTCATCTAATACATTTCCTCA
i macFas5.chr1                    I 46 C 0
s macNem1.NW_012017688v1           11419291 102 -  14060431 GCTGGGTCA----------------------------------------GTTCTTTCCAAGTATGTGTTTCTCTCCCCTATACCTCATTTCTG-----AAAAAAGGAAAA---CTG--------GAATTTAACTTCTTTCATCTAATACATTTCCTCA
i macNem1.NW_012017688v1          I 45 C 0
s chlSab2.chr20_KE148050v1_random   1030486 103 -   1280666 GCTGGGTCA----------------------------------------GTTCTTTCCAAGTACATGTTTCTCTCCCCTATACCTCATTTCTG----AAAAAAAGGAAAA---CTG--------GAATTTAACTTCTTTCATCTAATACATTTCCTCA
i chlSab2.chr20_KE148050v1_random I 45 C 0
s manLeu1.NW_012105087v1             514969 103 -   1325925 GCTGGGTCA----------------------------------------GTTCTTTCCAAGTACGTGTTTCTCTCCCCTATACCTCATTTCTG----GAAAAAAGGAAAA---CTG--------GAATTTAACTTCTTTCATCTAATACATTTCCTCA
i manLeu1.NW_012105087v1          I 45 C 0
s nasLar1.chr1                    197967643 106 - 215897965 GCTGGGTCA----------------------------------------GTTCCTTCCAAGTACGTGTTTCTCTCCCTCATACCTCATTTCTG----AAAAAANNGAAAACTTCTG--------GAATTTAACTTCTTTCGTCTAATACATTTCCTCA
i nasLar1.chr1                    I 46 C 0
s calJac3.chr18                     3664691  96 +  47448759 GTTGTTTGG----------------------------------------GCTTTTTCCAAGGAGATGTTTCTCTCCCCTGTACCTCAATTCTGCCaaaaaaaaaaaaaaacttttt--------gaatttaattt--------------attttCTCA
i calJac3.chr18                   I 46 C 0
s otoGar3.GL873592                  8658702  77 -   9938236 GGTAGACTC----------------------------------------CCTCCCT--------GCATCCCCAAACCTTTTCCCACATTTTCC-----AA--------------TT--------CACTTGTATTTCTCTTATCTA------TACTTCA
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e cerAty1.NW_012001440v1             762633 163 +   2461138 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=222828.000000
s hg38.chr1_KI270711v1_random         33100 38 +     42210 CAACATGCAGCCAGCATCATATTTTGGCCACTTACTAT
s panTro5.chr1                    208017447 38 - 228573443 CAACATGCAGCCAGCATCATATTTTGGCCACTTACTAT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208151450 38 - 229774977 CAACATGCAGCCAGCATCATATTTTGGCCACTTACTAT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3821740 38 -   8455952 CAACATGCAGCCAGCATCATATTTTGGCCACTTACTAT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    277329 38 +    297174 CAACTTGCTGCCAGCATCATATTCTGGCCACTTACTAT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103766489 38 - 225584828 CAACATGCTACCAGCATCGTATTCTGGCCACTTACTAT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211911769 38 + 227556264 CAACATGCTGCCAGCATCACATTCTGGTCACTTACTAT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11419393 38 -  14060431 CAACATGCTGCCAGCATCATATTCTGATTACTTACTAT
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1             762796 38 +   2461138 CAGCATGCTGTCAGCATCATATTCTGGTCACTTACTAT
i cerAty1.NW_012001440v1          I 163 I 13
s chlSab2.chr20_KE148050v1_random   1030589 38 -   1280666 CAACATGCTACCAGCATCGTATTCTGGCCACTTACTAT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             515072 38 -   1325925 CAACATGCTACCAGCATCGTATTCTGGCCACTTACTAT
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197967749 38 - 215897965 CAACATGTTGCCAGCATCACATTCTGGTCACTTACTAT
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3664787 38 +  47448759 CAGCATGCTGGCAGCATCCTATTCTAACCTCTTACTAT
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8658779  7 -   9938236 -------------------------------TTTCTGC
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=58974.000000
s hg38.chr1_KI270711v1_random         33138 17 +     42210 TAAAGTGAGATGCtttt
s panTro5.chr1                    208017485 17 - 228573443 TAAAGTGAGATGCtttt
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208151488 17 - 229774977 TAAAGTGAGATGCtttt
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3821778 17 -   8455952 TAAAGTGAGATGCtttt
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    277367 14 +    297174 TAAAGTGAGATGTC---
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103766527 17 - 225584828 TAAAGTGAGAttttttt
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211911807 17 + 227556264 TAAAGTGAGATGCtttt
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11419431 17 -  14060431 TAAAGTGAGAttttttt
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1030627  9 -   1280666 TAAAGTGAG--------
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             515110 17 -   1325925 TAAAGTGAGtttttttt
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197967787 17 - 215897965 TAAAGTGAGATGCtttt
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3664825 17 +  47448759 TACTGTGAGATGCCTCt
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8658786  9 -   9938236 CAAAAAGAA--------
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e cerAty1.NW_012001440v1             762834 13 +   2461138 I
e ponAbe2.chr1                    107372468 5115 + 229942017 I

a score=6006.000000
s hg38.chr1_KI270711v1_random         33155 1 +     42210 t
s panTro5.chr1                    208017502 1 - 228573443 t
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208151505 1 - 229774977 t
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3821795 1 -   8455952 t
i gorGor5.CYUI01015145v1          C 0 C 0
s ponAbe2.chr1                    107377583 1 + 229942017 t
i ponAbe2.chr1                    I 5115 I 1415
s nomLeu3.chr24_GL397604_1_random    277381 1 +    297174 t
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103766544 1 - 225584828 t
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211911824 1 + 227556264 t
i macFas5.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             515127 1 -   1325925 t
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197967804 1 - 215897965 t
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3664842 1 +  47448759 t
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8658795 1 -   9938236 T
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e cerAty1.NW_012001440v1             762834 13 +   2461138 I
e chlSab2.chr20_KE148050v1_random   1030636 0 -   1280666 C
e macNem1.NW_012017688v1           11419448 0 -  14060431 C

a score=2366.000000
s hg38.chr1_KI270711v1_random         33156 12 +     42210 ------tttttttttttt
s panTro5.chr1                    208017503 12 - 228573443 ------tttttttttttt
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208151506 10 - 229774977 ------ttttttttgg--
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3821796  8 -   8455952 ------tttttttg----
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    277382 12 +    297174 ------ttttttttttct
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103766545 12 - 225584828 ------tttttttttttt
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211911825 12 + 227556264 ------tttttttttttt
i macFas5.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1030636  9 -   1280666 ------Atttttttt---
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             515128  9 -   1325925 ------ttttttttt---
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197967805 12 - 215897965 ------ttcttttctttt
i nasLar1.chr1                    C 0 I 1
s calJac3.chr18                     3664843  4 +  47448759 ----------tttg----
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8658796 12 -   9938236 TTTGGATTTAAT------
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e cerAty1.NW_012001440v1             762834 13 +   2461138 I
e ponAbe2.chr1                    107377584 1415 + 229942017 I
e macNem1.NW_012017688v1           11419448  0 -  14060431 C

a score=726445.000000
s hg38.chr1_KI270711v1_random         33168 134 +     42210 ttt---tttttc------agacagggtcttattctgtcacccagggtggagtgcactggtgattatagatcacggcaatcttgaacttctgggctcaagcgatcctcctgcctcagctttccaagtagttggaactctaggca
s panTro5.chr1                    208017515 140 - 228573443 ttt---tttttttttttgagacagggtcttattctgtcacccaggctggagtgcactggtgattatagatcacggcaaccttgaacttctgggctcaagcgatcctcctgcctcagctttccaagtagttggaactctaggca
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208151516 125 - 229774977 ------------------agacagggtcttattctgtcacccaggctggagtgcgctggtgattatagatcacggcaaccttgaacttctgggctcaagcgatcctcctgcctcagctttccaagtagttggaactctaggca
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3821804 125 -   8455952 ------------------agacagggtcttattctgtcacccaggctggagtgcactggtgattatagatcacagcaaccttgaacttctgggctcaagcgatcctcctgcctcagctttccaagtagttggaactctaggca
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    277394 134 +    297174 ttt---tttttg------agacagcgtcttgttctgtcacccaggctggagtacactggtgattatagatcactgcaacctcgaactcctgggctcaatctatcctcctgcctcagctttccaagtagttggaactctaagca
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103766557 134 - 225584828 ttt---tttttg------agacagggtcttgttgtgtcacccaggctggagtacactggtgattatagatcactgcaacctcgaattcctaggctcaagcgatcctactgcctcagctttccaagtagttggaactctaggca
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211911837 137 + 227556264 ctttcctttttg------agacagggtcttgttctatcacccaggctggagtgcaccggtgattatagatcactgcaacctcgaaatactgggctcaagcgatcctcctacctcagctttacaagtagttggaactctaggca
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11419448 131 -  14060431 ------tttttg------agacagggtcttgttctgtcacccaggctggagtgcagtggtgattacagatcactacaacctcgaactcctgggctcaagcgatcctcctgcctcagctttccaagtaattggaactgtagaca
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1             762847 134 +   2461138 ttt---tttttg------agataggctctcgttctgtcccccagactggagtgcagtgctgatgatagccaactgcaacctcaaactcctaggatcaagtgatcatcttgcctcagctttccaaggagctggaactgtaggca
i cerAty1.NW_012001440v1          I 13 n 13
s chlSab2.chr20_KE148050v1_random   1030645 134 -   1280666 ttt---ttttgg------agacagggtcttgttctgtcacccaggctggagtacactggtgattacagatcactgcaacctcgaattcctgggctcaagcgatcctactgcctcagctttccaagtggttggaactctaggca
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             515137 134 -   1325925 ttt---tttttg------agacagggtcttgttctgtcacccaggctggagtacactggtgattatagatcactgcaacctcgaattcctgggctcaagcgatcctactgcctcagctttccaagtagttggaactctaggca
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197967818 137 - 215897965 ctttcctttttg------agacagggtcttgttctatcacccaggctggagtgcactggtgattatagatcactgcaacctcgaaatcctgggctcaagcgatcctcctatctcagctttccaagtagttggaactctaggca
i nasLar1.chr1                    I 1 C 0
s calJac3.chr18                     3664847 125 +  47448759 ------------------agacagggacttgttctgtcacccaggctgaagtgcagtgatgattatagctcactgcaacctcaaactcctgggctcaagtgatcctcctctctgaacatcccaagtagctggaactctaggca
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8658808  34 -   9938236 --------------------------------TTTTTCATC-----TGGCATATTTTG------------------AATTTTGAATTTA------------------------------------------------------
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107377584 1415 + 229942017 I

a score=131421.000000
s hg38.chr1_KI270711v1_random         33302 25 +     42210 cacatcaccatttctggcta---atttt
s panTro5.chr1                    208017655 25 - 228573443 cacatcaccatttctggcta---atttt
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208151641 25 - 229774977 cacatcaccatttctggctt---aattt
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3821929 25 -   8455952 cacatcaccatttctggcta---ttttt
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    277528 25 +    297174 cacatcaccatttctggcta---gtttt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103766691 25 - 225584828 cacatcaccatttctgacta---acttt
i rheMac8.chr1                    C 0 I 1
s macFas5.chr1                    211911974 25 + 227556264 cacatcaccatttctggcta---atttt
i macFas5.chr1                    C 0 I 1
s macNem1.NW_012017688v1           11419579 25 -  14060431 cacatcactatttctggcta---atttt
i macNem1.NW_012017688v1          C 0 I 1
s cerAty1.NW_012001440v1            1830501 25 -   2461138 cacatcaccatttctgacta---acttt
i cerAty1.NW_012001440v1          M 878 I 1
s chlSab2.chr20_KE148050v1_random   1030779 21 -   1280666 cacatcaccatttctg-------acttt
i chlSab2.chr20_KE148050v1_random C 0 I 1
s manLeu1.NW_012105087v1             515271 25 -   1325925 cacatcaccatttctgacta---acttt
i manLeu1.NW_012105087v1          C 0 I 1
s nasLar1.chr1                    197967955 25 - 215897965 cacatcaccatttctggcta---acttt
i nasLar1.chr1                    C 0 I 1
s calJac3.chr18                     3664972 28 +  47448759 catatcaccattcccggctatatatttt
i calJac3.chr18                   C 0 I 1
s otoGar3.GL873592                  8658842 13 -   9938236 ---ATTTTTTCATCTG------------
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107377584 1415 + 229942017 I

a score=-2465.000000
s hg38.chr1_KI270711v1_random         33327 1 +     42210 -a
s panTro5.chr1                    208017680 1 - 228573443 -t
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208151666 1 - 229774977 -t
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3821954 1 -   8455952 -t
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    277553 1 +    297174 -t
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s calJac3.chr18                     3665001 1 +  47448759 -t
i calJac3.chr18                   I 1 C 0
s otoGar3.GL873592                  8658855 1 -   9938236 A-
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    197967980 1 - 215897965 I
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e manLeu1.NW_012105087v1             515296 1 -   1325925 I
e cerAty1.NW_012001440v1            1830526 1 -   2461138 I
e macFas5.chr1                    211911999 1 + 227556264 I
e rheMac8.chr1                    103766716 1 - 225584828 I
e ponAbe2.chr1                    107377584 1415 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1030800 1 -   1280666 I
e macNem1.NW_012017688v1           11419604 1 -  14060431 I

a score=3198794.000000
s hg38.chr1_KI270711v1_random         33328 552 +     42210 tatttttcatagagacaaggtcttgctatgttgctcaggctggttttgaacttctggcctcaagcgatcctcccacctaggcctccaaaagtgctgggattacagaagttag-------ccactgaacctgg-ccCTGAAATG-----------------CT------TTTACTTTCTTTC----TTTTTTTT----AATGAAAATACTGGACATGGAGATGTGGAAAGACACCTTGCTTTATTACTT---TTGTTGTT---------ATTATTAT-TTCTACAGtagaatttatacatcacaaaattcaccatttttaagcatacatttcagtgtcttttaccatattccaaaactttcgcaaccatcgccactacctaattccagaatattttcataatgccaaaaagcatgcctgtaccta-tgggcagacactctccaattccccccttcttgcgctctctgacaaccactaatctaccttctctatatat--tgatgtacttgttctgggcacttcctctatatggaataacaaagtgtggtattttctatctgctt-------ct------tagaatattgttctcaagtttcatcct--ttctagcctgcgtcag
s panTro5.chr1                    208017681 555 - 228573443 tatttttcatagagacaaggtcttgctatgttgctcaggctggttttgaacttctggcctcaagcgatcctcccacctaggcctccaaaagtgctgggattacagaagttag-------ccactgaacctgg-ccCTGAAATG-----------------CT------TTTACTTTCTTTC-TTTTTTTTTTT----AATGAAAATACTGGACATGGAGATGTGGAAAGACACCTTGCTTTATTACTT---TTGTTGTT---------ATTATAAA-TTCTACAGtagaatttatacatcacaaaattcaccatttttaagcatacatttcagtgtcttttaccatattccaaaactttcacaaccatcaccactacataattccagaatattttcataatgccaaaaagcatgcctgtaccta-tgggcagacactctccaattgcccccttcttgcgctctctgacaaccactaatctaccttctctatatat--tgatgtacttgttctgggcacttcctctatatggaataacaaagtgtggtattttctatctgctt-------ct------tagaatattgttctcaagtttcatcct--ttctagcctgcatcag
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208151667 557 - 229774977 tatttttcatagagacaaggtcttgctatgttgctcaggctggttttgaacttctggcctcaagcgatcctcccacctaggcctccaaaagtgctgggattacagaagttag-------ccactgaacctgg-ccCTGAAATG----------------tct------tttactttcttttctttttttttTT----AATGAAAATACTGGACATAGAGATGTAGAAAGACACCTTGCTTTATTACTT---TTGTTGTT---------ATTATTAT-TTCTACAGtagaatttatacatcacaaaagtcaccatttttaagcatacatttcagtgtcttgtaccatattccaaaactttcacaaccattgccactacctaattccagaatattttcataatgccaaaaagcatgcctgtaccta-tgggcagacactctccaattcccctcttcttgcgctctctgacaaccactaatctaccttctctatatat--tgatgtacttgttctgggcacttcctctatatggaataacaaagtgtggtattttctatctgctt-------ct------tagaatattgttctcaagtttcatcct--ttctagcctgcatcag
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3821955 554 -   8455952 tatttttcatagagacaaggtcttgctatgttgctcaggctggttttgaacttctggcctcaagcaatcctcccacataggcctccaaaagtgttgggattacagaaggtag-------ccactgaacctgg-ccCTGAAATG-----------------CT------TTTACTTTCTTTC--TTTTTTTTTT----AATGAAAATAGAGGACATGGAGATGTGGAAAGACACCTTGCTTTATTACTT---TTGTTGTT---------ATCATTAT-TTCTACAGtagaatttatatatcacaaaattcaccatttttaagcatacatttcagtgtcttgtaccatattccaaaactttcgcaaccatcgccactacctaattccagaatattttcataatgccaaaaagcatgcctgtaccta-tgggcagacactctccaattaccctcttcttgcgctctctgacaaccactaatctaccttctctatatat--tgatgtacttgttctgggcacttcctctatatggaataacaaagtgtggtattttctatctgctt-------ct------tagaatattgttctcaagtttcatcct--ttctagcctgcatcag
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    277554 549 +    297174 tatttttcatagagacaaggtcttgctatgttgctcaggctggttttggacttctggcctcaagtgatcctcccacctaggcctccaaaaatgctgggattacaggagtgag-------tcaccgagcctggccCCTGAAATG-----------------CttatttatttatttatttatttattcatttTT----AATGAAAATACAGGACATGGAGATGTGGAAAGACATCTTGAattattactg---ttgtcatt---------attattat-tTCTACAGtacaattcatatatcacaaaattcaccatttttaagcatacatttcagtgtcttttaccatatttcaaag-tttcacagccatcaccactacctaattccagaatattttcataataccaaaaa-catgcctg----ta-tgggcagtcactctccaattccccccttcttgaggtctctgacaaccactaatctactttctct----------atgtacttgttctgggcacttcctctatatggaataacaaaatgtggtgttttacatctggtt-------ct------tagcatattgttctcaagtttcatcct--ttctagcctgcattag
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103766717 551 - 225584828 tatttttcatagagacaaggtcttgctttgttgctcaggctggttttgaacttctggcctcaagcaatcctctcacctaggcctccaaaagtgctgggattacaggagtgag-------cctctgagcctgg-ccCTGAAATG-----------------CT------TTTTGTTTGTGTT-----TGTTTTT----AATGAAAATACAAGACATGGAGATGTGGAAAGACACCTTGCTttattagtg---ttattagt---------attattat-tTCTACAGtataatttatatatcacaaaattcaccattttaaagcatacatttcagtgtcttttaccatattccaaaagttttgcaatcatcaccactacctaattccagaatattttcataatgccagaaagcatgcctgtatcta-cgtgcagtcactctccaattccccgcttcttgcagtctctgacaaccactaatctactttctctatacac--agatgttcttattctgggcacttcctctatatggaataacaaagtgtggcattttacatctgctt-------ct------cagcatattgttctcaagtttcatcct--tttcagcctgcatcag
i rheMac8.chr1                    I 1 C 0
s macFas5.chr1                    211912000 536 + 227556264 tatttttcatagagacaaggtcttgctatgttgctcaggctggttttgaccttctggcctcaagcgatcctcccaactaggcctccaaa--------gattacaggagtgag-------ccattgagcctgg--ccTGAAATGCtttttccttttttttccc------ttttttttttttt-----ttttttt----AATGAAAATACAGGACATGGAGATGTGGAAAGACACCTTGCTTTATTACTG---------------------TTATTAT-TTCTATAGtataattcatatatcacaaaattcaccatttttaaccacacatttca--gtcttttaccatattccaaaagtttcacaaccatctctactacctcattccagaatattttcataatgccaaaaaccatgcctgtaccta-cgggcagtcactcttcaattcccccattcttgctgtctctgacaaccactaatctattttctctagatat--agatgtacttgttctgggcacttcctctatagggaataacaaactgtgacattttccatctgttt-------ct------tagcatattgttctcaagtttcatcct--------------tcgt
i macFas5.chr1                    I 1 C 0
s macNem1.NW_012017688v1           11419605 543 -  14060431 tatttttcctagagacaaggtcttgctatgttgctcagactggttttgaaattctggcctcaaccgatcctctcacctagacctccaaaagtgctgggattacagaagtgag-------cccctgagcctgg-ccCTGAAATG----------------------------------TTTT-----TTTTTTT----AATGAAAATACAAGACATGGAGATGTGGAAAGACACCTTGCTttattactgttgttattagt---------attattat-tTCTACAGtataattcatatatcacaaaattcaccatttttaagcatacatttcagtgtcttttaccgtattccaaaagttttgcaataatcaccactacctaattccagaatattttcataatgccagaaagcatgcctgtatcta-cgggcagtcactctccaattccccgcttcttgcggtctctgacaaccactaatctactttctctatacac--agatgttcttattctgggcacttcctctatatggaataacaaagtgtggcattttacatctgctt-------ct------cagcatattgttctcaagtttcatcct--tttcagcctgcatcag
i macNem1.NW_012017688v1          I 1 C 0
s cerAty1.NW_012001440v1            1830527 551 -   2461138 tatttttcatagagacaaggtcttgctttgttgctcaggctggttttgaacttctggcctcaagcaatcctctcacctaggcctccaaaagtgctgggattacaggagtgag-------cccctgagcctgg-ccCTGAAATG-----------------CT------TTTTGTTTGTGTT-----TGTTTTT----AATGAAAATACAACACATGGAGATGTGGAAAGACACCTTGCTTTATTAGTG---TTATTAGC---------ATTACTAT-TTCTACAGtataattcatatatcacaaaattcaccatttttaagcatacatttcagtgtcttttaccatattccaaaagttttgcaaccatcaccactacctaattccagaatattttcataatgccagaaagcatgcctgtatcta-tgggcagtcactctccaattccccgcttcttgcggtgtctgacaaccactaatctactttctgtatacac--agatgttcttattctgggcactacctctatatggaataacaaagtgtggcattttacatctgctt-------ct------cagcatactgttctcaagtttcatcct--ttttagcctgcatcag
i cerAty1.NW_012001440v1          I 1 C 0
s chlSab2.chr20_KE148050v1_random   1030801 553 -   1280666 tatttttcatagagacaaggtcttgctttgttgctcaggctggttttgaacttctggcctcaagcaatcctctcacctaggcctccaaaagtgctgggattacaagagtgag-------cctctgagcctgg-ccCTGAAATG-----------------CT------TTTTGTTTGTGTT-----TGTTTTT----AATGAAAATACAAGACACGGAGATGTGGAAAGACACCTTGCTttattagtg---ttattagt---------attattat-tTCTACAGtataattcatatatcacaaaattcaccattttaaagcatacatttcagtgtcttttaccatattccaaaagttttgcaatcatcaccactacgtaattccagaatattttcataatgccagaaagcatgcctgtatcta-cgggcagtcactctccaattccccgcttcttgcggtctctgacaaccactaatctactttctctatacacagagatgttcttattctgggcacttcctctatatggaataacaaagtgtggcattttacatctgctt-------ct------cagcatattgttctcaagtttcatcct--ttttagcctgcatcag
i chlSab2.chr20_KE148050v1_random I 1 C 0
s manLeu1.NW_012105087v1             515297 551 -   1325925 tatttttcatagagacaaggtcttgctttgttgctcaggctggttttgaacttctggcctcaagcaatcctctcacctaggcctccaaaagtgctgggattacaggagtgag-------cctctgagcctgg-ccCTGAAATG-----------------CT------TTTTGTTTGTGTT-----TGTTTTT----AATGAAAATACAAGACATGGAGATGTGGAAAGACACCTTGCTttattagtg---ttattagt---------attattat-tTCTACAGtataatttatataccacaaaattcaccattttaaagcatacatttcagtgtcttttaccatattccaaaagttttgcaaccatcgccactacgtaattccagaatattttcataatgccagaaagcatgcctgtatcta-tgggcagtcactctccaattccccgcttcttgcggtctctgacaaccactaatctactttctctacacac--agatgtacttattctgggcacttcctctatatggaataacaaagtgtggcattttacatctgctt-------ct------cagcatattgttctcaagtttcatcct--ttttagcctgcatcag
i manLeu1.NW_012105087v1          I 1 C 0
s nasLar1.chr1                    197967981 542 - 215897965 tatttttcatanagacaaggtcttgctatgttgctcaggctggttttgaacttctggcctcaagcgatcctcccacctaggcctccaaaagtgctgggattacaggagtgag-------ccactgagcctgg--ccTGAAATG-----------------Ct------ttttttttctttt-----ttttttttttAAATGAAAATACAGGATATGGAGATGTGGAAAGATACCTTGCTTTATTACTG---------------------TTATTAT-TTCTATAGtataattcatatatcacaaaattcaccatttt-aagcatgcatttca--gtctttgaccatattccaaaagtttcacaaccatcaccactacctcattccagaatattttcataatgccaaaaaccatgcctgtaccta-cgggcagtcactcttcaattccccccttcttgctgtctctgacaaccactaatctactttctctagatac--agatgtacttgttctgggcacttcctctatatggaatcacaaactgtggccttttccatctgttt-------ct------tagcatattgttctcatgtttcatcct--tcgtaacctgcatcag
i nasLar1.chr1                    I 1 C 0
s calJac3.chr18                     3665002 575 +  47448759 cattttttgtaaagataaggtcttgctatttagctcaggctagtctagaacttctggcttcaagcaatcatcctacctaggcctccaaaagggctgggaatactggagcgagcTGTAAACCACTCAATTTGG-TTCTAAAATG-----------------Ct------tttttaaaaaata----atagtaaa----aataaaaataCAGGGTATGGA-ATATGGAAAGATACCTCACTTTATTACTG---TTATATTTTTCttctaaagtataatcttctaaagtataattcatatataacaaaatttaatatttttaagcataccactcagcatcttttactatattccaaaggttttgcaaccatcaccactattcga-accagaatactttcataatgccaaaatgcatgcctgtacttt-ctgccagttactctccaatttcaccatttttgcagtccctgtcagccactaatctaccttctctctctct--ggatatacttgttctggacatttcctgtatatggcataatgcaatgtggccttttgcatctgcat-------ctcttatgtatcacaaagttctcaaggttcatctttgttgtaccatgcattgg
i calJac3.chr18                   C 0 I 766
s otoGar3.GL873592                  8658856 440 -   9938236 TATATTT-------------TCTTACAAAGGTACACAGCATCAT------ATTCTGGCCAC----------------------------------------------------------TGGCTAAATCTGA-GACACAATTG-----------------CT------------------------------T----GATGAAAATATAGAGTGTAGGAATGTGGGAAGGCACATTGCTTTAATATTA---TTATTAGT---------GTTAttat-tgaggtatcattattaatataccataaaattcactattttaaagca----attcagtatcttctactgtatttcca--gtttttcaaccattgccagcacctaattccaacacatttttgtaacaccaagaagaatgcctgtacttatttggcagtcactctct-attaccctcttcttgcaatcagtagcaactactgatctactttctctctctgt--ggatttacttgtcctgg------------------------aaattttgtattttgcatttggcttgttttact------tagcataatgctttgaggttt-atccttgtcatagaatatagcag
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107377584 1415 + 229942017 I

a score=856393.000000
s hg38.chr1_KI270711v1_random         33880 138 +     42210 tacttcaact--ttttatggccagataatattccactatatggttataccacattttgtttat----tcatcaactcatggtggtttaag------------------------------------------atgtttccactttttaactattaggaataatgctgctgtgaacagctttgtaca
s panTro5.chr1                    208018236 138 - 228573443 tacttcaact--ttttatggccaaataatattccactatatggttataccacattttgtttat----tcatcaactgatggtggtttaag------------------------------------------atgtttccactttttaactattatgaataatgctgctgtgaacagctttctaca
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208152224 138 - 229774977 tacttcaact--ttttatggccaaataatattccactatatggttataccacattttgtttat----tcatcaactgatggtggttaaag------------------------------------------atgtttccactttttaactattatgaataatgctgctgtgaacagctttgtaca
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3822509 138 -   8455952 tacttcaact--ttttatggccaaataatattccactatatggttataccacattttgttcat----acatcaaccgatggtggtttaag------------------------------------------atgtttccactttttaactattatgaataatgctgctgtgaacagctttgtaca
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    278103 138 +    297174 tacttcactt--ttttatggccaaataatattccactatatggttataccacattttgtttat----tcatcaactgacagtggtttaag------------------------------------------atgtttccactttttaactattatgaataatgctgctatcaacacctttgtaga
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103767268 134 - 225584828 tacttcaact-ttttcatggccaaataatattccactatatggttacaccacattttgtttat----tcatcaactgatggtggtt-----------------------------------------------tgtttccactttttaactattatgaataatgctgctatgaacagctttgtaca
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211912536 136 + 227556264 tacatgaac---ttttatggcccaataatatgccactatat-gttacaccacattttgtttat----tcatcaactgatggtggtttaag------------------------------------------atgtttccactttttaactattaagaataatgctgctatgtacagctttgtaca
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11420148 139 -  14060431 tacttcaacc-tttttatggccaaataatattccactatatggttataccacattttgtttat----tcatcaactgatggtggtttaag------------------------------------------atgtttccactttttaactattaagaataatgctgctatgaacagctttgtaca
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1831078 139 -   2461138 tacttaaact-tttttatgcccaaataatattccactatatggttataccacattttgtttat----tcatcagctgatggtggtttaag------------------------------------------atgtttccactttttaactattatgaataatgctgctatgaacagctttgtaca
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1031354 134 -   1280666 tacttcaact-tttttatggctaaataatatttcactatatggttataccacattttgtttat----tcatcaactgatggtggtt-----------------------------------------------tgtttccactttttaactattatgaataatgctgctatgaacagctttgtaca
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             515848 134 -   1325925 tacttcaact-tttttatggctaaataatattccactatatggttataccacattttgtttat----tcatcaactgatggtggtt-----------------------------------------------tgtttccactttttaactattatgaataatgctgctatgaacagctttgtaca
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197968523 136 - 215897965 tacatgaa----ttttatggcccaataatatgccactatacggttacaccacattttgtttat----tcatcaactgatggtgatttaag------------------------------------------atgtttccactttttaactattaagaataatgctgctatgaacagctttgtaca
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3666343 186 +  47448759 tacttcagtcctttttatggccaaataatattccattttatagttataccacattttgtttatctgctcatcaaaggatggctgttagggttttccactttttcactatttcacttttccacacttttcactatgtttccactttttcactattatgaataatgctgctgtgaacatttatgcaca
i calJac3.chr18                   I 766 C 0
s otoGar3.GL873592                  8659296 134 -   9938236 cacctcaatcctttttatggccaaataatattctattacagag-tgtaccacactttatttgt--------caattgatggacatttgag------------------------------------------atgttgccactttttaaccaccatgcat-atgctgctatgaacattcatggaga
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107377584 1415 + 229942017 I

a score=1109392.000000
s hg38.chr1_KI270711v1_random         34018 203 +     42210 ggtttttgagtgaacatctgtttttcatttt-------cttggttataaacctaggagtgcaattgctgcatcatatgtcac----------------ttt---atgt--ttcactttttgaggaactcacacactgtttactaacttcagtagctacatcattttagattcccaatagtaatatatgag-aattccatattct-ccatcacttttgaaacatgtgttgtctt
s panTro5.chr1                    208018374 219 - 228573443 ggtttttgagtgaacacctgtttttcatttt-------cttggttataaacctaggagtgcaattgctgcatcatatgtcactttatgtttaacttttttt---atgt--ttaactttttgaggaactcacacactgtttactaacttcagtagctacatcattttagattcccaatagtactatatgag-aattcgatattct-ccatcacttttgaaacatgtgttgtctt
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208152362 220 - 229774977 ggtttttgagtgaacatctgtttttcatttt-------cttggttataaacctaggagtgcaattgctgcatcatatgtcactttatgtttaacttt-ttt---atgt--ttaactttttgaggaactcacacactgtttactaacttcagtagctacatcattttagattcccaatagtactatatgagaaattcgatattctcccatcacttttgaaacatgtgttgtctt
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3822647 219 -   8455952 agtttttgagtgaacgcctgtttttcatttt-------cttggttataaacctaggagtgcaattgctgcatcatatgtcactttatgtttaacttttttt---atgt--ttaactttttgaggaactcacacactgtttactaacttcagtagctacatcattttagattcccaatagtaatatatgag-aattccatattct-ccatcacttttgaaacatgtgttgtctt
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    278241 219 +    297174 tgtttttgagtgaacacctgtttttcatttt-------ctcagttgtaaacctaggagtgcaattgctgcatcatatgtcactttatgtttaacttttttt---atgt--ttaactttttgaggaactcacacactgtttaccaacttcagtagctatatcattttacattcccaatagtaatatatgag-aattccatattct-ccataactttccaaacatgtattatctt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103767402 220 - 225584828 tgtttttaagtgaacatctgtttttcatttt-------cttggttattaacctaggagtgcaattgctgcatcatatgtcactttatgtttaacttttttt--tatgt--ttaactttttgaggaactcatacacagtttaccaacttcagtggctacaccattttacattccccctagtaatatatgag-aatttcatattct-ctgtaactttccaaacatgtattgtctt
i rheMac8.chr1                    C 0 I 304
s macFas5.chr1                    211912672 222 + 227556264 agtttttgagtgaacacctgtttttcatttt-------cttggttataagcctacgagtgcaattgctgcatcatatgtcactttatgctttacttttttt--gttgttgttaaattttcgaggaactcacacactgttcaccaaattcagtagctatgccattttacattcccaacagtaatatgtgag-aattccatattct-ccataactttccaaacatgtattgtctt
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1831217 219 -   2461138 tgtttttgagtgagcatctgtttttcatttt-------cttggttactaacctgggagtgcaattgctgcatcatatgtcactttatgtttaacttttttt---atgt--ttaactttttgaggaactcacacactgtttaccaacttcagtggctacaccattttacattcccactagtaatatatgag-aattccatattct-ctgtaactttccaaacacgtattgtctt
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1031488 219 -   1280666 tgtttttaagtgaacatctgtttttcatttt-------cttggttattaacctaggagtgcaattgctgcatcatatgtcactttatgtttaacttttatt--tatgt--ttaactttttgaggaattcacacactgtttaccaacttcagtggctacaccattttacattccccctagtaatatatgag-aatttcatattct-ctgtaa-tttccaaacatgtattgtctt
i chlSab2.chr20_KE148050v1_random C 0 I 311
s manLeu1.NW_012105087v1             515982 220 -   1325925 tgtttttaagtgaacatctgtttttcatttt-------ctgggttattaacctaggagtgcaattgctgcatcatatgtcactttatgtttaacttttttt--tatgt--ttaattttttgaggaattcacacactgtttaccaacttcagtggctacaccattttacattccccctagtaatatatgag-aatttcatattct-ctgtaactttccaaacatgtattgtctt
i manLeu1.NW_012105087v1          C 0 I 317
s nasLar1.chr1                    197968659 222 - 215897965 annntttgagtcaacacctgtttttcatttt-------cttggttataagcctaggagtgcaattgctgcatcatatgtcactttatgttcaacttttttttttttgt--taaactttttgagaaactcacacactgttcactaaattcagtagctatgccattttacattcccaacagtaatatatgag-aattccatattct-ccataactttccaaacatgtattgtctt
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3666529 200 +  47448759 tgtttttgagtgaacagttgtttttaatttt-------cttgattatataccttggagtgcaattgctgcctcatatgtgac----------------ttt---atgt--ttcactttttgaggaactaacagactgttttccaacctcagtggctataccaatttgcattcccac---taatatatggg-aattctgttttct-ccataactttccaaacatatgttgtctt
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8659430 181 -   9938236 agtttttaagtgaacatgttttcaccattttaaattcacttggttctataactaggagtggaattgctggatcatatgaacc----------------tgt---acat--ttaactttttgaggaaccgatagactatccaagg-----------------------------cattagcaatgcatgag-aattccattttct-ctacaatctccccaacatatgttctctg
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107377584 1415 + 229942017 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=1915640.000000
s hg38.chr1_KI270711v1_random         34221 341 +     42210 --tatttttttcttaagtcatactgctgggtgtgaagtggtatctcattttggtttaaatttacattttcctaatgacgaaaaacattgaacatctttgcatgtgcttcttggccatttgtgtgtttcctttagagaaacctctactcacagctttttttccccattgttaaatgtgg----ttgtcgtttattgctcagttatatgaattccttatatactctaggtactagacctgtgtcaaacatataatttggaaatagttctcccattatgtggattatcttttcacttccttgacagtgtcctttgaagcatacaagttttttattttaatgaagtccatt
s panTro5.chr1                    208018593 339 - 228573443 --tatttttttcttaagtcatactgctgggtgtgaagtggtatctcattttggtttaaatttaca-tttcctaatgatgaaaaacattgaacatctttgcatgtgcttcttggccatttgagtgtttcctttagagaaacctctactcacagc-ttttttccccattgttaaatgtgg----ttatcgtttattgctcagttacatgaattccttatatactctaggtactagacctgtgtcaaacatataatttggaaatagttctcccattatgtggattatcttttcacttccttgacagtgtcctttgaagcatataagttttttattttaatgaagtccatt
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208152582 338 - 229774977 --tatttttttcttaagtcatactgctgggtgtgaagtggtatctcattttggtttaaatttaca-tttcctaatgatgaaaaacattgaacatctttgcatgtgcttcttggccatttgagtgtttcctttagagaaacctctactcacagc-ttttttccccattgttaaatgtgg----ttatcgtttattgctcagttacatgaattccttatatactctaggtactagacctgtgtcaaacatttaatttggaaatagttctcccattatgtggattatcttttcacttccttgacagtgtcctttgaagcatataagtttttta-tttaatgaagtccatt
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3822866 336 -   8455952 --tatttttttcttaagtcatacggctgggtgtgaagtggtatctcattttggtttaaatttacattttcctaatgacgaaaaacagtgaacatctttgcatgtgcttcttggccatttgtgtgtttcctttagagaaacctctactcacagc--ttttttcccgttgttaaatgtgg----ttgtcgtttattgct--gttatatgaattccttatatactctaggtactagacctgtgtcaaacatataatttggaaatagttctcccattatgtggattatcttttcacttccttgacagtgtcctttgacgcatataagtttttta-tttaatgaagtccatt
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    278460 336 +    297174 --tatttttttcctaagtcatactagtgggtgtgaagtggtatcgcattttggtttaagattacattttcctaat---gaaaaacattgaatatctttgcatgtgcttcttggccatttgtgtgtttcctttagagaaacctctactcacagc--ttttttcccattgttaaatttgg----ttgtcatttattgctcagttatatgaatttcttatatactctaggtactagacccgtgtcaaatacataatttggaaatagttctcccattatgtggattatcttttcacttccttgacagtgtcctttgaagcatataagatttttattttaattaagtccatt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103767926 343 - 225584828 --tatttttttcttaagtcatactagtgggtgtgaagtggtatctcattttggtttaaatttacattttcctaatgatgaaaaacactgaacatctttgcatgtgcttcttggccatttgtgtgtttgctttagagaaacctctactcacagc--tttttacccattgtcaaatttggttgtttgtcatttattgctcagttatatgaattcctcgtatactctaggtactagacccatgtcaaatatataatttggaaatagttctcccattatgtggattatcttttcacttccttgacagtgtcctttaaagcacataagatttttattttaatgaagtccatt
i rheMac8.chr1                    I 304 C 0
s macFas5.chr1                    211912894 342 + 227556264 --tatttttttcttaagtcatagtagtgggtgtgaactggtatctcattttggtttaaatttacattttcctaatgatgaaaaacattgaacatcttagcatgtgcttcttggccatttgtgtgttt-ccttagagaaacctctactcacagc-tttttttcccattgttaaattgggtcgtttgtcgtcttttgctcagttatatgaattccttatacactctaggtattagacctgtgtcaaatatataatttggaaatagttctcccattatgtggattatcttttcacttccttgacagtgtcctttgaagcatataag-ttattattttaatgaagtccatt
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1831436 342 -   2461138 --tatttttttcttaagtcatactagtgggtgtgaagtggtatctcattttggtttaaatttacattttcctaatgataaaaaacactgaacatctttgcatgtgcttcttggccatttgtgtgttt-ccttagagaaacctctactcacagc--tttcttcccattgttaaattgggttgtttgtcattttttgctcagttatatgaattccttatatactctaggtactagacccatgtcaaatatataatttggaaatagttctcccattatgtggattatcttttcacttctttgacagtgtcctttaaagcatgtaagattttcattttaatgaagtccatt
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1032018 343 -   1280666 --tatttttttcttaagtcatactagtgggtgtgaagtggtctctcattttggtttaaatttacattttcctaatgatgaaaaacactgaacatctttgcatgtgcttcttggccatttgtgtgtttgctttagagaaacctctactcacagc--tttttacccattgtcaaatttggttgtttgtcatttattgctcagttatatgaattccttgtatactctaggtactagacccatgtcaaatatataatttggaaatagttctcccattatgtggattatcttctcacttccttgacagtgtcctttaaagcatgtaagatttttattttaatgaagtccatt
i chlSab2.chr20_KE148050v1_random I 311 C 0
s manLeu1.NW_012105087v1             516519 343 -   1325925 --tattttcttcttaagtcatactagtgggtgtgaagtggtatctcattttggtttaaatttacattttcctaatgatgaaaaacactgaacatcttcgcatgtgcttcttggccatttgtgtgtttgctttagagaaacctctactcacagc--tttttacccattgtcaaatttggttgtttgtcatttattgctcagttatatgaattcctcgtatactctaggtactagacccatgtcaaatatataatttggaaatagttctcccattatgtggattatcttttcacttccttgacagtgtcctttaaagcacataagatttttattttaatgaagtccatt
i manLeu1.NW_012105087v1          I 317 C 0
s nasLar1.chr1                    197968881 341 - 215897965 --tattttttccctaagtcatagtagtgggtgtgaagtggtatctcattttggtttaaatttacattttcctaatgatgaaaaacattgaacatcttagcatgtgcttcttggccatttgtgtgttt-ccttagagaaacctctactcacagc--ttttttcccattgttaaatttggttgtttgtcgtttcttgctcagttatatgaattctttatatactctaggtactagacctgtgtcaaatatacaatttggaaatagttctcccattatgtggattatcttttcacttccttgacagtgtcctttgaagcatatcag-tttttattttcatgaagtccatt
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3666729 332 +  47448759 -------ttttgtgaagtcatactggtgagtctgatgtgatatctcattttgatttaagtttgcattttcctaatgatgaaaaacattgaacatctttgcatgtgctttttagccatttgtatgtatcctttacagaaatgtctattcaaacc--ttttctttcattgttaaattgggtaattgggcttttttt--ctagttatatgaattctttgtatactctagataccagacccttgtcaggcatatgattggaaaatagttcttccattctgtgaattatcttttaacttccttggcagagtccttggaagcatgaaatattt----ttttatgaagtccatt
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8659611 324 -   9938236 ttttgtttgttttgtagtcatactaatgggtgttaggtggtatctcatttttgtttaggtttatattttcctaatgactaataatgttagacatcgttgcatgagcttgttggccatctgtatgcatcctttagagaaatgtctattcaaact--ctttttcccactgttaaattgg-----ttgtcatttatcgatcagttataagagttctttatatattcttgatactagattcttctcagatatatgacttgcagatgttt----cattatttgatttatcttttcagt------------tcctttaaatcatgagagtttttcaatttaatgaagtccagt
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107377584 1415 + 229942017 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=4095.000000
s hg38.chr1_KI270711v1_random         34562 1 +     42210 t
s ponAbe2.chr1                    107378999 1 + 229942017 t
i ponAbe2.chr1                    I 1415 C 0
s rheMac8.chr1                    103768269 1 - 225584828 t
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211913236 1 + 227556264 t
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1831778 1 -   2461138 t
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1032361 1 -   1280666 t
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             516862 1 -   1325925 t
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197969222 1 - 215897965 t
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3667061 1 +  47448759 t
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8659935 1 -   9938236 t
i otoGar3.GL873592                C 0 C 0
e gorGor5.CYUI01015145v1            3823202 0 -   8455952 C
e panPan2.chr1                    208152920 0 - 229774977 C
e panTro5.chr1                    208018932 0 - 228573443 C
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e papAnu3.chr1                    201402616 13588 - 220367699 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    278796 0 +    297174 C

a score=3222.000000
s hg38.chr1_KI270711v1_random         34563 3 +     42210 atc
s ponAbe2.chr1                    107379000 3 + 229942017 atc
i ponAbe2.chr1                    C 0 n 0
s rheMac8.chr1                    103768270 3 - 225584828 ata
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211913237 3 + 227556264 ctc
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1831779 3 -   2461138 ata
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201416204 3 - 220367699 ctc
i papAnu3.chr1                    I 13588 C 0
s chlSab2.chr20_KE148050v1_random   1032362 3 -   1280666 ata
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             516863 3 -   1325925 ata
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197969223 3 - 215897965 ctc
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3667062 3 +  47448759 atc
i calJac3.chr18                   C 0 C 0
e otoGar3.GL873592                  8659936 0 -   9938236 C
e gorGor5.CYUI01015145v1            3823202 0 -   8455952 C
e panPan2.chr1                    208152920 0 - 229774977 C
e panTro5.chr1                    208018932 0 - 228573443 C
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    278796 0 +    297174 C

a score=4282.000000
s hg38.chr1_KI270711v1_random         34566 1 +     42210 t
s panTro5.chr1                    208018932 1 - 228573443 t
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208152920 1 - 229774977 t
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3823202 1 -   8455952 t
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    278796 1 +    297174 t
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103768273 1 - 225584828 t
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211913240 1 + 227556264 c
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1831782 1 -   2461138 t
i cerAty1.NW_012001440v1          C 0 C 0
s papAnu3.chr1                    201416207 1 - 220367699 c
i papAnu3.chr1                    C 0 N 0
s chlSab2.chr20_KE148050v1_random   1032365 1 -   1280666 t
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             516866 1 -   1325925 t
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197969226 1 - 215897965 c
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3667065 1 +  47448759 t
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8659936 1 -   9938236 t
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107379003 0 + 229942017 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=156395.000000
s hg38.chr1_KI270711v1_random         34567 29 +     42210 atctatttttcggttgtttgtg-cctactt
s panTro5.chr1                    208018933 29 - 228573443 atctatttttcggttgtttgtg-cctactt
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208152921 30 - 229774977 atctatttttcggttgtttgtgacctactt
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3823203 28 -   8455952 atctatttttc-gttgtttgtg-cctactt
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    278797 29 +    297174 atctatttttgggttgtttgtg-cctgctt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103768274 29 - 225584828 atctatttttgagttgtttgtg-cctactt
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211913241 29 + 227556264 atctatttttggattgtttgtg-cctactt
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1831783 29 -   2461138 atctatttttgagttgtttgta-cctactt
i cerAty1.NW_012001440v1          C 0 I 298
s chlSab2.chr20_KE148050v1_random   1032366 29 -   1280666 atctatttttgagttgtttgtg-cctactt
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             516867 29 -   1325925 atctatttttgagttgtttgtg-cctactt
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197969227 29 - 215897965 atctatttttggattgtttgtg-cctactt
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3667066 25 +  47448759 ----attttggcattgcttgtg-cctactg
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8659937 29 -   9938236 atttattttggggttgcttgtg-catatat
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107379003  0 + 229942017 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=35205.000000
s hg38.chr1_KI270711v1_random         34596 6 +     42210 aaaaaa
s panTro5.chr1                    208018962 6 - 228573443 aaaaaa
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208152951 6 - 229774977 aaaaaa
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3823231 6 -   8455952 aaaaaa
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    278826 6 +    297174 aaaaaa
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103768303 6 - 225584828 aaaaaa
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211913270 6 + 227556264 aaaaaa
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1832110 6 -   2461138 aaaaaa
i cerAty1.NW_012001440v1          I 298 C 0
s chlSab2.chr20_KE148050v1_random   1032395 6 -   1280666 taaaaa
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             516896 6 -   1325925 taaaaa
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197969256 6 - 215897965 aaaaaa
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3667091 6 +  47448759 aagaaa
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8659966 6 -   9938236 aagaaa
i otoGar3.GL873592                C 0 I 125
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107379003 0 + 229942017 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=1225926.000000
s hg38.chr1_KI270711v1_random         34602 213 +     42210 t-gtctaatccaaaatcacaaagatttgtacctaggtttccttcaagaCATCGTCTTTTGAATGAGAACTTTCCTGGGTTTTAGAGGAGGGTGGACATTGTTTATTGATGCCTCCTGTCCATT-ACCGATGTTTCTCTTGATTGTTATTCATATGCTCACCA-CCCCTCCATGGAGCAT-CCATGGCCTGTGACAGAGCTCTGGGGACTGATATCCT
s panTro5.chr1                    208018968 213 - 228573443 t-gtctaatccaaagtcacaaagatttgtacctatgtttccttcaagaCATCGTCTTTTGAATGAGAACTTTCCTGGGTTTTAGAGGAGGGTGGACATTGTTTATTTATGCCTCCTGTCCATT-ACCGATGTTTCTCCTGATTCTTATTCATATGCTCACCA-CCCCTCCATGGAGCAT-CCATGGCCTGTGACAGAGCTCTGGGGACTGATATCCT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208152957 214 - 229774977 tagtctaatccaaagtcacaaagatttgtacctatgtttctttcaagaCATCGTCTTTTGAATGAGAACTTTCCTGGGTTTTAGAGGAGGGTGGACATTGTTTATTTATGCCTCCTGTCCATT-ACCAATGTTTCTCCTGATTGTTACTCATATGCTCACCA-CCCCTCCATGGAGCAT-CCATGGCCTGTGACAGAGCTCTGGGGACTGATATCCT
i panPan2.chr1                    C 0 M 20
s gorGor5.CYUI01015145v1            3823237 213 -   8455952 t-gtctaatccaaagtcacaaagatttgtacctatgtttccttcaagaCATTGTCTTTTGAATGAGAACTTTCCTGGGTTTTAGTGGACGGTGGACATTGTTTATTTATGCCTCCCGTCCATT-ACCGATGTTTCTCCTGATTGTTATTCATATGCTCACCA-CCCCTCCATGGAGCAT-CCATGGCCTGTGACAGAGCTCTGGGGACTGATATCCT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    278832 210 +    297174 t-gtctaatccaaagtcacaaagatttgtaactacgtttccttCAAGATATCGTTTTTTGAATGAGAACTTTCCTGGCTTTTAGTGGAGGGCAGACATTGTTT----ATGCCTCGTGTCCATT-ACCGATGTTTCTCCTGATTGTTATTCATATGCTCACCA-CCCCTCCATGGAGCATCCCATGGCCTGTAACAGAGCTCTGGGGACTGATATCCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103768309 213 - 225584828 t-gtctaatccaaagtcacaaagatttatacctatgttttcttcaagaCATTGTTTTTTGAATGAGAA-TTTCCTGGGTTTTAGTGGAGCGTGAACATTGCTTATTTATGCCTCCTGTCCATT-ACCGATGTTTCTCCTGATTGTTATTCATATGCTCACCA-CCCCTCCATGGAGCATCCCATGGCCTGTAACAGAGCTTTGGGGACTGATATCCT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211913276 211 + 227556264 t-gtctaatccaaagtcacaaagatttgtact--tgttttcttcaagaCATCGTTTTTTAAAGGAGAACTTTCCTGGGTTGTAGAGGAGGGTGGACATGGTTTATTTATGCCTCCTGTCCATT-ACCGATGTTTCTCCTGATTGTAATCCATATGCTCACCA-CCCCTCCATGGAGCAT-CCATGGCCTGTAACAGAGCTCTGGGGACTGATATCCT
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1832116 213 -   2461138 t-gtctaatccaaagtcacaaagatttatacctatgttttcttcaagaCATTGTTTTTTGAATGAGAA-TTTCCTGGGTTTTAGTGGAGCGTGAACATTGCTTATTTATGCCTCCTGTCCATT-ACCGATGTTTCTCCTGATTGTTATTCATAGGCTCACCA-CCCCTCCATGGAGCATCCCATGGCCTGTAACAGAGCTTTGGGGACTGATATCCT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1032401 212 -   1280666 t-gtctaatccaaagtcacaaagatttatacctatgttttcttcaagaCATCATTTTTTGAATGAGAA-TTTCCTGGGTTTTAGTGGAGGGTGGACATGGTTTATTTATGCCTCCTGTCCATT-ACCGATGTTTCTCCTGATTGTTATCCATATGCTCACCA-CCCCTCCATGGAGCAT-CCATGGCCTGTAACAGAGCTCTGGGGACTGATATCCT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             516902 213 -   1325925 t-gtctaatccaaagtcacaaagatttatacctatgttttcttcaagaCATCGTTTTTTGAAAGAGAA-TTTCCTGGGTTTTAGTGGAGGGTGAACATTGCTTATTTATGCCTCCTGTCCATT-ACCGATGTTTCTCCTGATTGTTATTCATATGCTCACCA-CCCCTCCATGGAGCATCCCATGGCCTGTAACAGAGCTTTGGGGACTGATATCCT
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197969262 210 - 215897965 t-gtctaatccaaagtcacaaagatttgtacc--tgttttcttcAAGACATCGTTTTTTGAAGGAGAACTTTCCTGGGTTGTAGAGGAGGGTGGACTTGGTTTATTTATGCCTCCTGTCCATT-ACCCATGTTTCTCCTGATTGTTATTCATATGCTCACCA-CCCCTCCATGGAGCAT-CCACGGCCTGTAACAGAACTCT-GGGACTGATATCCT
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3667097 214 +  47448759 t-gtttaatccaaagtcagaaagatttgtaactatgttcgctttaagaCATCACTTTTGGAATGAGAACTTTCCTAGGTTTTAGTGAAGAGTGGACATTGCTTTTTCATGCCTTCTGTCCATT-TCTGATATTTCTCCTGATTGGTATTTATATGCACTTCA-TTCCTTCATGGAGCATCTCATGGGCTGGAACAGAGCTCTGGGGACTGGTATCCT
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8660097 212 -   9938236 t-gtctaatcc-aagacacaaagatttatacctatgttttctttaaaaCATCACTTTTTAAATGTGAGCTTGCCTGGGTTTTAGCAGAGAGTGAAAATTATTTAAGTATATGTCCTGTCCACTGAGTGATATTTGTTCTGATTGAT---TATATGCTCACCACCCCCTTCTTGAGGCCTCCAGTGACCTGTAATAGAGATCTGGGAAATGGAATCCT
i otoGar3.GL873592                I 125 C 0
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107379003   0 + 229942017 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=618852.000000
s hg38.chr1_KI270711v1_random         34815 121 +     42210 TCCACTGACTTTGGCGCTGGTGAGAGCCCTGGTCATGTGATTCAGCTTGGCCTTAACCCGACCCAGTTGCACATATTCCTCAGGCCCTTTAGAGTTGA--AGTCGAGA-CCTCTCTGA-GAACGC
s panTro5.chr1                    208019181 121 - 228573443 TCCACTGACTTTGGCACTGGTGAGAGCCCTGGTCATGTGATTCAGCTTGGCCTTAACCCGACCCAGTTGCACATATTCCTCAGGCCCTTTAGAGTTGA--AGTCGAGA-CCTCTCTGA-GAACGC
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3823450 121 -   8455952 TCCACTGACTTTGGCGCTGGTGAGAGCCCTGGTCATGTGATTCAGCTTGGCCTTAACCCGACCCAGTTGCACATATTCCTCAGGCCCTTTAGAGTTGA--ATTCGAGA-CCTCTCTGA-GAACGC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279042 122 +    297174 TCCACTGACTTCGGCGCTGGTGAGAGCCCTGGTCATGTGATTCAGCTTAGCCTTAACCCGACCCAGTTGCACATATTTCTCAGGGCCTTCAGAGTTGA--AGTCAAGAGGCTCTCTGA-GAACGC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103768522 122 - 225584828 TCCACTGACTTTGGCACTGGTGAGAGCCCTGGTCGTGTGGTTCAGCTTGGCCTTAACCCGACCCAGTTGCACATATTCCTCAGGGCCTTTACAGTTGA--AGTCGAGAGCCTCTCTGA-GAACGC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211913487 122 + 227556264 TCCACTGACTTTGGTGCTGGTGAGAGCCCTGGTCATGTGGTTCAGCTTGGCCTTAACCCAACCCAGTTGCACATATTCCTCAGGCCCTTTAGAGTTGA--AGCTGAGAGCCTCTCTGA-GAATGC
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1832329 122 -   2461138 TCCACTGACTTTGGCACTGGTGAGAGCCCTGGTCGTGTGGTTCAGCTTGGCCTTAACCCGACCCAGTTGCACATATTCCTCAGAGCCTTTACAGTTGA--AGTTGAGAGCCTCTCTGA-GAACGC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1032613 122 -   1280666 TCCACTGACTTTGGCACTGGTGAGAGCCCTGGTCGTGTGGTTCAGCTTGGCCTTAACCCGACCCAGTTGCACATATTCCTCAGGGCCTTTACAGTTGA--AGTCGAGAGCCTCTCTGA-GAACGC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             517115 122 -   1325925 TCCACTGACTTTGGCACTGGTGACAGCCCTGGTCGTGTGGTTCAGCTTGGCCTTAACCCGACCCAGTTGCACATATTCCTCAGGGCCTTTACAGTTGA--AGTCGAGAGCCTCTCTGA-GAACGC
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197969472 122 - 215897965 TCCACTGACTTTGGCGCTGGTGAGAGCCCTGGTCATGTGGTTCAGCTTGGCCTTAACCTGACCCAGTTGCACATATTCCTCAGGCCCTTTAGAGTTGA--AGCTGAGAGCCTCTCTGA-GAATGC
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3667311 120 +  47448759 TCCACTGACCTTGACGCTGCTGAGAGCCCTGATCATGTGATTCAGC-TGGCCTTAAGCCAACTCACTTGAACATATTCCTC-GGACATCTAGAGTAAA--AGTCAGGAGCCTCTCTGA-GAATGC
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8660309 125 -   9938236 TTCACTGGCTTTGATTCAAGTGAAAGACCTGATCATGTGTTTCAGCTTGGCCTTAACCCAATCCAATTTCACATATTACTCAGGACCTTTAGAGTTGAAGAGTTGAGTGCCTCTCTGAGGGATAC
i otoGar3.GL873592                C 0 C 0
e panPan2.chr1                    208153171  20 - 229774977 M
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107379003   0 + 229942017 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=159042.000000
s hg38.chr1_KI270711v1_random         34936 25 +     42210 TTGCCAGCCCATGCTCTTCTAAGGC
s panTro5.chr1                    208019302 25 - 228573443 TTGCCAGCCCATGCTGTTCTAAGGC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208153191 25 - 229774977 TTGCCAGCCCATGCTGTTCTAAGGC
i panPan2.chr1                    M 20 C 0
s gorGor5.CYUI01015145v1            3823571 25 -   8455952 TTGCCAGCCCATGCTGTTCTAAGGC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279164 25 +    297174 TTGCCAGCCCATGCTGTTCTAAGGC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103768644 25 - 225584828 TTCCCAGCCCATGCTGTTCTAAGGC
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211913609 25 + 227556264 TTGCCAGCCCATGCTGTTCTAAGGC
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1832451 25 -   2461138 TTCCCAGCCCATGCTGTTCTAAGGC
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1032735 25 -   1280666 TTGCCAGCCCATGCTGTTCTAAGGC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             517237 25 -   1325925 TTGCCAGCCCATGCTGTTCTAAGGC
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197969594 25 - 215897965 TTGCCAGCCCATGCTGTTCTAAGGC
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3667431 25 +  47448759 TTGGCAGCTCATGCTGTTCTAAAGC
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8660434 25 -   9938236 CTGGGACCCCGTGGTGTTCTAGGGC
i otoGar3.GL873592                C 0 I 186
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107379003  0 + 229942017 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=1685772.000000
s hg38.chr1_KI270711v1_random         34961 329 +     42210 TGGAGCAAA-----------------------------------CTTCCTCCATCTATTCCAGACAGAGGGGACTGCAGGGGTTG-------------------GACTCA------------------CTCAAGA-----------TATCTCTGGTGTTA----GAAAGAAGACCTGTTTCAGGCTTTGGGGAAGATTGTTCAATATGAACTAGGTCCTCTCTAATTATTTTTACCGTATGTGTGACTTCTTTCTAGAAACAAGGGAAG-------AATATTTATGTTAGAACATTTTGTCTATTCTTTGTCAATTGTTGTTTATCTACAATTTTAACATGGAT--AAAGGAGAGTTCAGTGTCAATATATTCTTAACAACTAATTACGGCTCATGTCCACCGCcatgcgatcatatttaaatct
s panTro5.chr1                    208019327 329 - 228573443 TGGAGCAAA-----------------------------------CTTCCTCCATCTATTCCAGACAGAGGGGACTGCAGGGGTTG-------------------GACTCA------------------CTCAAGA-----------TACCTCTGGTGTTA----GAAAGAAGACCTGTTTCAGGGTTTGGGGAAGATTGCTCAATATGAACTAGGTCCTCTCTAATTATTTTTACTGTATGTGTGACTTCTTTCTAGAAACAAGGGAAG-------AATATTTATGTTAGAATATTTTGTCTATTCTTTGTCAATTGTTGTTTATCTACAATTTTAACATGGAT--AAAGGAGAGTTCAGTGTCAATATATTCTTAGCAACTAATTATGGCTCATGTCCACCGCcatgcgatcatatttaaatct
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208153216 329 - 229774977 TGGAGCAAA-----------------------------------CTTCCTCCATCTATTCCAGACAGAGGGGACTGCAGGGGTTG-------------------GACTCA------------------CTCAAGA-----------TACCTCTGGTGTTA----GAAAGAAGACCTGTTTCAGGGTTTGGGGAAGATTGCTCAATATGAACTAGGTCCTCTCTAATTATTTTTACTGTATGTGTGACTTCTTTCTAGAAACAAGGGAAG-------AATATTTATGTTAGAATATTTTGTCTATTCTTTGTCAATTGTTGTTTATCTACAATTTTAACATGGAT--AAAGAAGAGCTCAGTGTCAATATATTCTTAGCAACTAATTATGGCTCATGTCCACTGCcatgcgatcatatttaaatct
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3823596 329 -   8455952 TGGAGCAAA-----------------------------------CTTCCTCCATCTATTCCAGACAGAGGGGACTGCAGGGGTTG-------------------GACTCA------------------CTCAAGA-----------TATCTCTGGTGTTA----GAAAGAAGACCTGTTTCAGGGTTTGGGGAAGATTGCTCAATATGAACTAGGTCCTCTCTAATTATTTTTACTGTATGTGTGACTTCTTTCTAGAAACAAGGGAAG-------AATATTTATGTTAGAACATTTCATCTATTCTTTGTCAACTGTTGTTCATCTACAATTTTAACATGGAT--AAAGGAGAGCTCGGTGTCAGTATATTCTTAACAACTGATTATGGCTCATGTCCACTGCcatgcgatcatatttaaatct
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279189 321 +    297174 TGGAGCAAA-----------------------------------CTTCCTCCATCTATTCCAGACAGAGGGGACTGCAGGGGTTG-------------------GAGTCA------------------GTCAAGA-----------CATGTCTGGTGTTA----GAAAGTAGAGCTGTTTCAGGGTTTGGGGAAGATTGTTCAAT-TGAACTAGGTCCTCT----TTGTTTTTACTGTATGTGTGACTTCTTTCTAGAAACAAAGGAAG-------AATGTTTATGTTAGAACATTTTGTCTATTCTTTGTCAA---TTGTTTGTCTACAATTTTAACGTGGAT--AAAGGAGAGCTCAGTGTAAATATATTCTTAAAAACTAATTATGGTTCATGTCCACTACcatgcgatcatatttaaatct
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103768669 313 - 225584828 TGGAGCAAA-----------------------------------CTTCCTACGTCTATTCCAGACAGAGGGGACTGCAGGGGTTG-------------------GACTCA------------------TTCAAGA-----------CATCTCTCGTGTTA----GACAGTACACCTGTTTCAGGGTTTGAGGAAGATTGTTCAAAATGAACTAGGTTC--------TATTTTTACTGTATGTGTGACTTCTTTCTAGAAACAA---AAG-------AATATTTATGTTAGAACAGTTTGTCTATTCTTTGTCAATTGTTGTTTGTCTAC-ATTTTAACATGGAT--AAAGGAGCGCTCAGTGTAAATATGTTCTTAAC----AATTATGGTTCATGTCCACTGCCATGCAATCATATTTAAATCT
i rheMac8.chr1                    C 0 I 3663
s macFas5.chr1                    211913634 335 + 227556264 TGGAGCAAA-----------------------------------CTTCCTCTGTCTATTCCAGACAGAGGAGATTGCAGGGGTTG-------------------GACTCA------------------GTCAAGA-----------CATCTCTGGTGTTA----GAAAGTAGACCTGTTTCAGGGTTTGGAGAAGATTGTTCAATATGAACTAGGTCCTCTCCAATTATTTTTACTGTATGTGTGACTTCTTTCCAGAAACAA---AGGAATAAATAATATTTTGCTTAGAACATTCTGTCTATTCTTTGTCAATTGTTGTTTGTCTACAACTTTCACATGGATAAAAAGGGGAGTTCAGTGTAAATATATTCTTAACAATTAATTATGGTTCATGTCCTCTGCCACGGGatcatatttaaatct
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1832476 313 -   2461138 TAGAGCAAA-----------------------------------CTTCCTACGTCTATTCCAGACAGAGGGGACCGCAGGGGTTG-------------------GACTCA------------------TTCAAGA-----------CATCTCTCGTGTTA----GACAGTACACCTGTTTCAGGGTTTGAGGAAGATGGTTCAAAATGAACTAGGTTC--------TATTTTTACTGTATGTGTGACTTCTTTCTAGAAACAA---AAG-------AATATTTATGTTAGAACAGTTTGTCTATTCTTTGTCAATTGTTGTTTGTCTAC-ATTTTAACGTGGAT--AAAGGAGCGCTCAGTGTAAATATGTTCTTAAC----AATTATGGTTCATGTCCACTGCCATGCAATCATATTTAAATCT
i cerAty1.NW_012001440v1          C 0 I 3642
s chlSab2.chr20_KE148050v1_random   1032760 316 -   1280666 TGGAGCAAA-----------------------------------CTTCCTACGTCTATTCCAGACAGAGGGGACTGCAGGGGTTG-------------------GACTCA------------------TTCAAGA-----------CATCTCTCGTATTA----GAAAGTACACCTGTTTCAGGGTTTGAGGAAGATTGTTCAAAATGAACTAGGTTC--------TATTTTTACTGTATGTGTGACTTCTTTCTAGGAACAAAAGAAG-------AATATTTATGTTAGAACAGTTTGTCTATTCTTTGTCAATTGTTGTTTGTCTAC-ATTTTAACGTGGAT--AAAGGAGCGCTCAGTGTAAGTATGTTCTTAAC----AATTATGGTTCATGTCCACTGCCATGCAATCatatttaaatct
i chlSab2.chr20_KE148050v1_random C 0 I 6493
s manLeu1.NW_012105087v1             517262 313 -   1325925 TAGAGCAAA-----------------------------------CTTCCTACGTCTATTCCAGACAGAGGGGACTGCAGGGGTTG-------------------GACTCA------------------TTCAAGA-----------CATCTCTCATGTTA----GACAGTACACCTGTTTCAGGGTTTGAGGAAGATTGTTCAAAATGAACTAGGTTC--------TATTTTTACCGTATGTGTGACTTCTTTCTAGAAACAA---AAG-------AATATTTATGTTAGAACAGTTTGTCTATTCTTTGTCAATTGTTGTTTGTCTAC-ATTTTAACGTGGAT--AAAGGAGCGCTCAGTGTAAATATGTTCTTAAC----AATTATGGTTCATGTCCACTGCCATGCAATCATATTTAAATCT
i manLeu1.NW_012105087v1          C 0 I 4735
s nasLar1.chr1                    197969619 329 - 215897965 TGGAGCAAA-----------------------------------CTTCCTCTGTCTATTCCAGACAGAGGAGATTGCAGGGGTTG-------------------GACTCA------------------GTCAAGA-----------CATCTCTGGTGTTA----GAAAGTAGAGCTGTTTCAGGGTTTGGAGAAGATTGTTCAATATGAACTAGGTCCTCTCTAATTATTTTTACTGCATGTGTGACTTCTTTCCAGAAACAA---AGG----AATAATGTTTATCTTATAACATTCTGTCTATTCTCTGTCAATTGTTGTTTGTCTACAATTTTCACATGGAA--AAAGGAGAGTTCACTGTAAATATATTCTTAACAATTAATTATGGTTCATGTCCTCTGCCACGTGatcatatttaaatct
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3667456 359 +  47448759 CGGAGCAGA-----------------------------------CTTCCTTAGTCTATT----ACAGAGGGAACTGCATGGGTTGACTGGGTCATATATATGCAGAGTCAACCCCTGCAGACACTGTGTTCAGAATAGACTTCTTTCACCTCTGGCATTA----GAAAACAGACCTGCTTTATGGTTTGGGGAAGGTTGTTTGATATGAACTAGGTCCTCTCTAATTATTTTTACTGTATGTGTGACTTCTTCCAAGAAACAATGGAAG-------AATATTTATGTTAGAAC-----------TTTTTGTCAGTTGTTGTTTGTCTACAGTTTTAAAGTAGAT--AAAGGAGAGTTCAATGTAAATGTA---TTAATACTTAATTATGCTTGATGCCCACTGCCATAAGATCATATTTAATTGT
i calJac3.chr18                   C 0 I 4
s otoGar3.GL873592                  8660645 350 -   9938236 TAAAACAAAAAGGTTGAAAAACACAATTCTAGGGGTAGAATGTGCTTCTTTGATCTACTCTAGACAGAGGAGTCTGCAAGGGTTG-------------------GATCTA------------------GTTACGA----------------CTGGTATTAACTGGAGACTAGACCTGCTTCAGGGTTTGGGGAAGGTTATTCAATATGAACTAGGTCCTC---------TTTTACTATATGTGTGACTTCTTTCTAGAAATGGTGAAAG-------AATTT----GTTAGAACATTTTATATATTCTTTGCCAGTTGTTGTCTGTCTAAAATTTTTAAGTATAT--AAAGGAGAAGTAAGAGTAAGTATATTCTTAACACTTATGTGTGGTCCATGAACACTATCATGAGAGCATatttaatcct
i otoGar3.GL873592                I 186 C 0
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e ponAbe2.chr1                    107379003   0 + 229942017 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=224789.000000
s hg38.chr1_KI270711v1_random         35290 84 +     42210 gtcaactatcctgttacttaggtattatcctgttcctgatgagaaaacaaactcagaaagattgcaaaatttccctaggtcaca
s panTro5.chr1                    208019656 84 - 228573443 gtcaactatcctgttacttaggtattatcctgttcctgatgagaaaacaaactcagaaagattgcaaaatttccctaggtcaca
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208153545 84 - 229774977 atcaactatcctgttacttaggtagtatcctgttcctgatgagaaaacaaactcagaaagattgcaaaatttccctaggtcaca
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3823925 84 -   8455952 atcaactatcctgttacttaggtagtatcctgttcctgatgaaaaaataaactcagaaagattgcaaaattttcccaggtcaca
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279510 84 +    297174 atgaactatcatgttacttaggtattatcctgctcctgatgagaaaacaaactcagaaagattgcaaaatttccccaggtcaca
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211913969 84 + 227556264 atgaactagcctgttacttaggtattatcctgttcccgatgagaaaacaaactcagaaagatgggaaaatttccctaggtcaca
i macFas5.chr1                    C 0 I 808
s nasLar1.chr1                    197969948 84 - 215897965 atgaactagcctgttacttaggtattatcctgttcctgatgagaaaacaaactcagaaagattggaaaatttccctaggtcaca
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3667819 79 +  47448759 ACGAACTA-----TTACTtaggtattgtcctgttcctgatgagaaaacagactcagaaagattacaaaattaccctaggtcaca
i calJac3.chr18                   I 4 C 0
s otoGar3.GL873592                  8660995 84 -   9938236 ataaactacctcattactcaaatattatccttctccaatgaggaaaataaactcggaaagattacaagattcccctaggtcaca
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e manLeu1.NW_012105087v1             517575 4735 -   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003  0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=349251.000000
s hg38.chr1_KI270711v1_random         35374 186 +     42210 aaactagtgaggagaggagtaagaattagatatccgttccttttggccttcaaagctaacctt-gtaccattagatcaaactgATTTACA-tacttttgctggaattagtctcagactt-gtggttctcacttgattttcccaag----------------------gaaacagtgtgccactttaatatcgtttcaaactttgaaattta
s panTro5.chr1                    208019740 186 - 228573443 aaactagtgaggagaggaataagaattagaaaccagttccttttggccttcaaagctaacctc-ataccattagatcaaactgATTCACA-tacttttgctggaattagtctcagagtt-gtggttctcacttgattttcccaag----------------------gaaacagtatgtcacttgaatatcatttcaaactttgaaattta
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208153629 186 - 229774977 aaactagtgaggagaggaataagaattagaaaccagttccttttggccttcaaagctaacctc-ataccattagatcaaactgATTCACA-tacttttgctggaattagtctcagagtt-gtggttctcacttgattttcccaag----------------------gaaacagtatgtcacttgaatatcatttcaaactttgaaattta
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3824009 186 -   8455952 aaactagtgaggagaggaataagaattagaaaccagttccttttggccttcaaagctaacctt-gtaccattagatcaaactgATTCACA-tacttttgctggaattagtctcagagtt-gtggttctcacttgattttcccaag----------------------gaaacagtgtgccacttgaatatcatttcaaactttgaaatgta
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279594 187 +    297174 aaactagtgaggagaggaataagaattagaaaccagttccttttggccttcaaagcTAACCAT-GTACCATTAGATCAAACTGATTTACA-CACttttgctggaattagtctcagagttcatggctctcgcttgattttcccaag----------------------gaaattgtgtgccactttaatgtcatttcaaactctgaaattta
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s nasLar1.chr1                    197970032 209 - 215897965 aaactagtgaggagaggaacaagaattagaaaccagttccttttggccttcaaagctaatctt-gtaccattagatcaaactgATTTACA-TACCTTTGCGGGAATTTGTCTCAGAGTTTGTGGTTCTCACTTGATTTTCTAGAAAATGGTTAAACATTTTCTAGATGAAACAGTgtgccactttaatatcatgtcaaactttgaaattta
i nasLar1.chr1                    C 0 N 0
s calJac3.chr18                     3667898 185 +  47448759 aatccagtgatgaatcaaataagaattagaaagcagtttcttttggccttcaaagcttacttt-ataccattagatcaaactgAATGATagtacttttgctagaataagtctcagagt--gtggttctagactgattttcc-atg----------------------aaaacattgagtcattttagtagtatttcaaacttttaaatttc
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8661079 189 -   9938236 aatctagtaaggagaagagaaagcattagaaaccagttctgtttggtcttcaaaggcaacctcaataccattatatcaaactgAATAGcaatacctttgatggattaagtatcagaatttgtggttctagattgattttctcaaa----------------------gaagcagtgtgttattttaatattatctcatacttttaaatgtc
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e manLeu1.NW_012105087v1             517575 4735 -   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003   0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=227.000000
s hg38.chr1_KI270711v1_random         35560 4 +     42210 -aaac
s panTro5.chr1                    208019926 4 - 228573443 -aaac
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208153815 4 - 229774977 -aaac
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3824195 4 -   8455952 -aaac
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279781 2 +    297174 -aa--
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s calJac3.chr18                     3668083 4 +  47448759 -aaag
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8661268 4 -   9938236 aaaa-
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e manLeu1.NW_012105087v1             517575 4735 -   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003 0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=4404.000000
s hg38.chr1_KI270711v1_random         35564 3 +     42210 tct
s panTro5.chr1                    208019930 3 - 228573443 tct
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208153819 3 - 229774977 tct
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3824199 3 -   8455952 tct
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279783 3 +    297174 ctt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s nasLar1.chr1                    110523927 3 - 215897965 tct
i nasLar1.chr1                    N 0 I 141
s calJac3.chr18                     3668087 3 +  47448759 tct
i calJac3.chr18                   C 0 I 1
e otoGar3.GL873592                  8661272 0 -   9938236 C
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e manLeu1.NW_012105087v1             517575 4735 -   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003 0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=147139.000000
s hg38.chr1_KI270711v1_random         35567 126 +     42210 tttt---attatacttttttgtctttgttctattccgttgcttttggtttcttctcaacggatccctcttatttatatgctaaatatttgttacctattttctgtcaattttcacatttttgagtgttt
s panTro5.chr1                    208019933 125 - 228573443 tttt---attatacttttttgtctttgttctattccattgcttttggtttcttctcaatggatccctcttatttctaggctaaatatttattatctactttccatcaattttca-atttttgagtgttt
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208153822 125 - 229774977 tttt---attatacttttttgtctttgttctattccattgcttttggtttcttctcaatggatccctcttatttctaggctaaatatttattatctactttccatcaattttca-atttttgagtgttt
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3824202 124 -   8455952 tttt---attatacttttttgtctttgttctattccattgcttttggtttcttctcaacggatccctcttattcctaggctaaatatttgttatc-actttccatcaattttct-atttttgagtgttt
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279786 126 +    297174 tttt---attatacttttttgtctttgttctgttccatttcttttgatttcttctcaacagatccctcttatttatatgctaaatatttgttacctattttctgtccattttcacatttttgagtgttt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s calJac3.chr18                     3668091 128 +  47448759 ttttaaaattataccttattgtgtttgtcctattccatt-tttttcttttttcctcaacagattcctattatttatccactcaatatttgttacctatcctctgtcaatttttatttctttgagctttt
i calJac3.chr18                   I 1 C 0
s otoGar3.GL873592                  8661272 117 -   9938236 ------aaaaaaatgtattggtgtttgcgctattccattgc-tttggtttcgtttaaatggattcctattattgatgtcctgaatatttctta-ctaatttct---aattgtca-cttttttagccttt
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110523930 141 - 215897965 I
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e manLeu1.NW_012105087v1             517575 4735 -   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003   0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=6574.000000
s hg38.chr1_KI270711v1_random         35693 4 +     42210 gtta
s panTro5.chr1                    208020058 4 - 228573443 gtta
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208153947 4 - 229774977 gtta
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3824326 4 -   8455952 gtta
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279912 4 +    297174 attt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s nasLar1.chr1                    110524071 4 - 215897965 gtta
i nasLar1.chr1                    I 141 I 303
s calJac3.chr18                     3668219 4 +  47448759 gtca
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8661389 4 -   9938236 gtca
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e manLeu1.NW_012105087v1             517575 4735 -   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003 0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=388944.000000
s hg38.chr1_KI270711v1_random         35697 290 +     42210 tctGTC----TGTTGTATGCTAACAGttcttcactgaggtaaaatttgcgtagagtatactgcaaaaaaacctaaaggcacagcttaataaattttaatataattata----attgtaaagtaacacccagttaaagacagagaacattttcccccatgccacaaagttctgatgtggtccttgccagtcaatactcatcccccaaatgaagaatatattctgaatgttgtcactgccttagcccctttgtgttgctgga-aaggaataccagaggctggg-taagttatcaagacaaga
s panTro5.chr1                    208020062 289 - 228573443 tctctc----tgttGTACACTAACAGttcttcgctgaggtaaaatttgcatagagtatactgc-aaaaaacctaaaggcacagcttaataaattttaatataattata----attgtaaagtaacacccagttaaagacagagaacattttcccccatgccacaaagttctgatgtggtccttgccagtcaatactcattccccaaatgaagaatatattctgaatgttgtcactgccttagcccctttgtgttgctgga-aaggaataccggcggctgcg-taatttatcaagacaaga
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208153951 290 - 229774977 tctctc----tgttGTATGCTAACAGttctttgctgaggtaaaatttgcatagagtatactgc-aaaaaacctaaaggcacagcttaaaaaattttaatataattata----attgtaaagtaacacccagttaaagacagagaacattttcccccatgccacaaagttctgatgtggtccttgccagtcaatactcattccccaaatgaagaatatattctgaatgttgtcactgccttagcccctttgtgttgctgga-aaggaataccggcggctgcgttaatttatcaagacaaga
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3824330 280 -   8455952 tctctc----tgttGTAtgctaacatttcttcactgaggtaaaatttgcatagagtatactgc-aaaaaacctaaaggcacagcttaataaattttaatataattata---cattgta----------tagttaaagacagagaacattttcccccatgccacaaagttctgatgtggtccttgccagtcaatactcatcccccaaatgaagaatatattctgaatgttgtcactgccttagcccctttgtgttgctgga-aaggaataccagaggctggg-taatttatcaagacaaga
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279916 295 +    297174 tctctctctttgttGTATGCTAACAGttcttcactgagatataatttgcatagagaatactgc-aaaaaacctaaaggtacagctttataaattttaatataattata---cattgtataataacacccagttaaagacagagaacattttcccacatgccacaaggttcttatgtggcccttgccagtcaatattcatcccccaaatgaagaatatattctgaatgttgtcactgccttagtccctttgtgttgctggaccggggataccagtggctgag-taatttataaagaaaaga
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s calJac3.chr18                     3668223 290 +  47448759 cctttt----tgttTTATGCTAACAGCtcttcactaaggtataatttgcatggtgtaaactacaagaaaacttatgggtacagcttaatgagttttaatataattata---cattgtatcataatacccatatcaaggtagagaacattttcctctatgccaaaatgttcttatgtgttccttgccagtc-atactcatcccccaaatgaggaatatattctaaatgttgtcactgtattagtccctttgtgttgctata-aaggaataccagagactcag-ttaattataaagaaaaga
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8661393 276 -   9938236 tctctttct-ttttttattctAACAGTTC-----------------tgcatctagcaaaatgc-aaaaaccttaacagtacagttcaatgaattttaacataattatgcatcattgtataatgcctcccaggtcaagacagaaaacattt--caccatggtcaatagttctgatctgct-cttgctagtcaatattcatcccacaaataatgagtatattctgaactttgtcactgtctcagttcatttgcattgctata-aaggaatccttgcagctgag-taatttataaagaagaga
i otoGar3.GL873592                C 0 C 0
e nasLar1.chr1                    110524075 303 - 215897965 I
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e manLeu1.NW_012105087v1             517575 4735 -   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003   0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=2800.000000
s hg38.chr1_KI270711v1_random         35987 1 +     42210 g
s panTro5.chr1                    208020351 1 - 228573443 g
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208154241 1 - 229774977 g
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3824610 1 -   8455952 g
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    280211 1 +    297174 g
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s nasLar1.chr1                    110524378 1 - 215897965 g
i nasLar1.chr1                    I 303 I 4851
s calJac3.chr18                     3668513 1 +  47448759 g
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8661669 1 -   9938236 g
i otoGar3.GL873592                C 0 C 0
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e manLeu1.NW_012105087v1             517575 4735 -   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003 0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=554213.000000
s hg38.chr1_KI270711v1_random         35988 407 +     42210 gtgccttttgctcatagttctgcaggctgtacaagaagcatggcccccgcatctgctcctaatgagggcctgaggctgcttccacttgcagcagaaggtgaaaaggaaccagggtgtgcagagatcatatggcgagagaggaagcaaaagagagc------aaggaaaggtgagaggcactttttaataaccagctcctacaggaactaagagagtgagaattcactcactaccttctc-ccagggtggggattcatctattcatgagggatccactcccatgacccaaacacctcccatttacccccacctccaacactggggaccacatttgaacatgtgatttggaggggaccaatatttaaact-tagcagccaccatagattcattttgcttgatcatgtgcttcataaa
s panTro5.chr1                    208020352 407 - 228573443 gtgccttttgctcatagttctgcaggctgtacaagaagcatggctcccgcatctgctcctaatgagggcctgaggctgcttccacttgcagcagaaggtgaaaaggaaccagggtgtgcagagatcatatggcgagagaggaagcaaaagagagc------aaggaaaggtgagaggcgctttttaataaccagctcctacaggaactgagagagtgagaattcactcactaccttctc-ccagggtggggattcatctattcatgagggatccactcccatgacccaaacacctcccatttactcccacctccgacactggggaccacatttgaacatgtgatttggaggggaccaatatttaaact-tagcagccaccatagattcattttgcttgatcatgtgcttcataaa
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208154242 406 - 229774977 gtgccttttgctcatagttctgcaggctgtacaagaagcatggctcccgcatctgctcctaatgagggcctgaggctgcttccacttgcagcagaaggtgaaaaggaaccagggtgtgcagagatcatatggcgagagaggaagc-aaagagagc------aaggaaaggtgagaggcgctttttaataaccagctcctacaggaactgagagagtgagaattcactcactaccttctc-ccagggtggggattcatctattcatgagggatccactcccatgacccaaacacctcccatttactcccacctccgacactggggaccacatttgaacatgtgatttggaggggaccaatatttaaact-tagcagccaccatagattcattttgcttgatcatgtgcttcataaa
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3824611 405 -   8455952 gtgcc-tttgctcatagttctgcaggctgtacaagaagcatggcacccacatctgctcctaatgagggcctgaggctgcttccacttgcagcagaaggtgaaaaggaaccagggtgtgcagagatcacatggcgagagaggaagcaaaagagagc------aaggaaaggtgagaggcactttttaataaccagctcctacaggaaccaagagagtgagaattcactcactaccttctc-ccagggtggggattcatctattcatgagggatccactcccatgacccaaacacctcccatttacccccacctccgacactggggaccacatttaaacatgtgatttggaggggaccaatatttaaact-tagcggccaccatagattca-tttgcttgatcatgtgcttcataaa
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    280212 400 +    297174 gtgcattttgctcatagttctacaggctgcacaagaatcatggcacccgcatctgctcctaattagggcctgaggctgcttccacttgcagc---aggtgaaaaggaaccagtgtgtgcagagatcacatggtgagagaggaagcgaaagagagt-----------aaggtgagaggcactttttaataaccagctcctacaggaactaagagagtgagaattcactcactaccttctc-ccagggtggggattaatctattcatgaaggatccactcccgtgacccaaacacctcccattaacacccacctccaacactggggaccacatttaaacatgtgatttggaagggaccaatatttaaactatagaagccaccagagattaattttgcttattgatgtgcttcatgaa
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s calJac3.chr18                     3668514 410 +  47448759 gcatatttccaacatagttctgcaggctgcacaagaagcatggcaccaacaactgcttttaatgagggcctgaggctgcttctcctcacgacagaagatgaaaggcaaccagtgtgtgcaaagatcgtgtggtgagagaggaagcaaaagagagagacagagaggaacagtgcaag--actctttaataaccagctcttgcaggaactaaaagagtgagaattcactcactgccttctc-ctagggagaggataaataagttcatgggggatccactcccatgatcc-aacacctcccattaagcctaacctccaatgctggggatcaaatttaaacatgaga-taggagggaacaaatacgtaaactctatcagccatggcagattaagtttacttatttttgtgcttcataac
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873592                  8661670 393 -   9938236 gtttatttggctcacagctctgcaggctgtacgggaagtat-gcaccagcgtctgcttctgataaaagcctcaggctgcttccactcatggtggaaagcaataggaagccagtgtgtgcagagatcacatgat-aaaaaggaagcaggagagaca------gaggggagatgccaggctctttttaacaaacaagtct----ggacccaata----gggaactcactccctgttcccactccagagagtgcattaatttatttaggagggatctgctcctatgacctaaacaccctctattaggcctcacctacaatgctggagattaagtttcaacatgaaattagggggagacaaatatccaaacgacagtaattgctatacgttaatttttcttatt------cttcatgaa
i otoGar3.GL873592                C 0 N 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e manLeu1.NW_012105087v1             517575 4735 -   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003   0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=15475.000000
s hg38.chr1_KI270711v1_random         36395 12 +     42210 aatggaatcatT
s panTro5.chr1                    208020759 12 - 228573443 aatggaatcatt
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208154648 12 - 229774977 aatggaatcatt
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3825016 12 -   8455952 aatggaatcatt
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    280612 12 +    297174 aatggaatcatt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s calJac3.chr18                     3668924 12 +  47448759 aatgaaattatt
i calJac3.chr18                   C 0 I 2358
e nasLar1.chr1                    110524379 4851 - 215897965 I
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e manLeu1.NW_012105087v1             517575 4735 -   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003  0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=145463.000000
s hg38.chr1_KI270711v1_random         36407 170 +     42210 TTggctgggcctggtggctcatgcctgtaatcccaagactttgcaaggctgaggcgggcagatcacctgaggtcaggcgttcaagaccagcctggccaacatggtaaaaccctgcctctactgaaaatacaaaaaattagccaggcatggtggccggtgcctgtaatccc
s panTro5.chr1                    208020771 170 - 228573443 ttggctgggcctggtggctcatgcctgtaatcccaagactttgcaaggctgaggtgggcagatcacctgaggtcaggcgttcaagaccagcctggccaacatggtaaaaccctgcctctactgaaaatacaaaaaattagccaggcatggtggcaggtgcctgtaatccc
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208154660 170 - 229774977 ttggctgggcctggtggctcatgcctgtaatcccaagactttgcaaggctgaggtgggcagatcacctgaggtcaggcgttcaagaccagcctggccaacatggtaaaaccctgcctctactgcaaatacaaaaaattagccaggcatggtggcaggtgcctgtaatccc
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3825028 170 -   8455952 ttggctgggcctggtggctcatgcctgtaatcccaacacttcgcaaggctgaggcgggcagatcacctgaggtcaggcgttcaagaccagcctggccaacatggtaaaaccctgcccctactgaaaatacaaaaaattagccaggcatggtggcaggtgcctgtaatccc
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    280624 167 +    297174 ttggccagtcctggtggttcacgcctgtaatcccaagact--gcgaggctgaggcggacagatcacctgaggtcaggagttcaagaccagcctggccaacatggtaaaactctgtctctactgaaaatac-gaaaattagccaggtgtggtggcaggtgtctttaatccc
i nomLeu3.chr24_GL397604_1_random C 0 I 4013
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e manLeu1.NW_012105087v1             517575 4735 -   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003   0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=1146.000000
s hg38.chr1_KI270711v1_random         36577 2 +     42210 ag
s panTro5.chr1                    208020941 2 - 228573443 ag
i panTro5.chr1                    C 0 I 4005
s panPan2.chr1                    208154830 2 - 229774977 ag
i panPan2.chr1                    C 0 I 4004
s gorGor5.CYUI01015145v1            3825198 2 -   8455952 ag
i gorGor5.CYUI01015145v1          C 0 I 3998
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e manLeu1.NW_012105087v1             517575 4735 -   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003 0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    280791 4013 +    297174 I

a score=0.000000
s hg38.chr1_KI270711v1_random         36579 33 +     42210 GCACCGGATATGTACTGGTATCTCATATGTACA
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e gorGor5.CYUI01015145v1            3825200 3998 -   8455952 I
e panPan2.chr1                    208154832 4004 - 229774977 I
e panTro5.chr1                    208020943 4005 - 228573443 I
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e colAng1.NW_012114988v1            3752272 2409 -   3775709 I
e manLeu1.NW_012105087v1             517575 4735 -   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003  0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    280791 4013 +    297174 I

a score=2910.000000
s hg38.chr1_KI270711v1_random         36612 3 +     42210 gga
s panTro5.chr1                    208024948 3 - 228573443 gga
i panTro5.chr1                    I 4005 C 0
s panPan2.chr1                    208158836 3 - 229774977 gga
i panPan2.chr1                    I 4004 C 0
s nomLeu3.chr24_GL397604_1_random    284804 3 +    297174 gga
i nomLeu3.chr24_GL397604_1_random I 4013 C 0
s colAng1.NW_012114988v1            3754681 3 -   3775709 gga
i colAng1.NW_012114988v1          I 2409 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e gorGor5.CYUI01015145v1            3825200 3998 -   8455952 I
e rhiBie1.NW_016834311v1               2140 0 -      2279 I
e manLeu1.NW_012105087v1             517575 4735 -   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003 0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=29069.000000
s hg38.chr1_KI270711v1_random         36615 28 +     42210 tatgtactggtatctcattgttgtattg
s panTro5.chr1                    208024951 25 - 228573443 tatgtactgctatctc---gttgtattg
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208158839 25 - 229774977 tatgtactgctatctc---gttgtattg
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3829198 25 -   8455952 tatgtactgctatctc---gttgtattg
i gorGor5.CYUI01015145v1          I 3998 C 0
s nomLeu3.chr24_GL397604_1_random    284807 28 +    297174 tatgtactggtatctcattgttgtattg
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s colAng1.NW_012114988v1            3754684 28 -   3775709 tatgtactagtatctcattgttgtattg
i colAng1.NW_012114988v1          C 0 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016834311v1               2140  0 -      2279 I
e manLeu1.NW_012105087v1             517575 4735 -   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003  0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=182209.000000
s hg38.chr1_KI270711v1_random         36643 108 +     42210 attgatgttcctgctggctaaacagtagagcatcttttcctatgctaattgaccattcatgtatcttcttttcttaagtacct-attcaagtcttttgagaaattgttt
s panTro5.chr1                    208024976 108 - 228573443 attgatctccctgatgactaaacagtagagcatcttttcctatgctaattgaccatttatgtatcttctttactgaagtatct-attcaagtcttttgagaaactgttt
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208158864 108 - 229774977 attgatctccctgatgactaaacagtagagcatcttttcctatgctaattgaccatttatgtatcttctttactgaagtatct-attcaagtcttttgagaaattgttt
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3829223 109 -   8455952 attgatctccctgatgactgaacagtagagcatcttttcctatgctaattgaccatttatgtatcttctttactgaagtatctaattcaagtcttttgagaaattgttt
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    284835 108 +    297174 attgatctccctgatgactaaacagtagagcatcttttcctatgctaattgaccattcatgtgtcttcttttctgaagcatct-attcaagtcttttgagaaattgttt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s manLeu1.NW_012105087v1             943310 108 +   1325925 attgatctttctgatgactaaagagttgagcatcttttcatgtgctaatcgacgattcatgtatcttcttttctgaagtgttt-attcacgtctttggagaaactgttt
i manLeu1.NW_012105087v1          I 20671 C 0
s colAng1.NW_012114988v1            3754712 108 -   3775709 attgatctccctgatgactaaacagtagagcatcttttcctatgctaattgaacattcatgtatcttcttttctgaagtatct-attcaagtctttAGAGAAACTGTTT
i colAng1.NW_012114988v1          C 0 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016834311v1               2140   0 -      2279 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003   0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=781.000000
s hg38.chr1_KI270711v1_random         36751 1 +     42210 c
s panTro5.chr1                    208025084 1 - 228573443 c
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208158972 1 - 229774977 c
i panPan2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    284943 1 +    297174 c
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s manLeu1.NW_012105087v1             943418 1 +   1325925 t
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3754820 1 -   3775709 C
i colAng1.NW_012114988v1          C 0 C 0
s rhiBie1.NW_016816432v1             131731 1 +    307276 t
i rhiBie1.NW_016816432v1          I 21106 I 895
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e gorGor5.CYUI01015145v1            3829332 0 -   8455952 C
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003 0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=14571.000000
s hg38.chr1_KI270711v1_random         36752 8 +     42210 attgtgct
s panTro5.chr1                    208025085 8 - 228573443 attgtgct
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208158973 8 - 229774977 attgtgct
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3829332 8 -   8455952 attgtgct
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    284944 8 +    297174 attgtgct
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s manLeu1.NW_012105087v1             943419 8 +   1325925 atagtgct
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3754821 8 -   3775709 ATTGTGCT
i colAng1.NW_012114988v1          C 0 I 73
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016816432v1             131732 895 +    307276 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003 0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=16383.000000
s hg38.chr1_KI270711v1_random         36760 35 +     42210 gtttatcttattaAAC------Ttatata------------------------------------------tatata-cataca
s panTro5.chr1                    208025093 77 - 228573443 gtttatcttattaGac------atatatacacacacatatatatacacatgcatatatatacatacatatatatata-cataca
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208158981 59 - 229774977 gtttatcttattaGac------atatata--cacacatatatatacacatgcata----------------tatata-cataca
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3829340 75 -   8455952 gtttatcttattaGAC------atatataaacacacatatatatacacatacatatatatacatacata--tatata-cacaca
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    284952 51 +    297174 gtttatcttatcagactgcaatatatata-------gtatatata--------------------------tgtatagcataca
i nomLeu3.chr24_GL397604_1_random C 0 I 22
s manLeu1.NW_012105087v1             943427 21 +   1325925 gtttatcttATCAAAC-------TCTAT--------------------------------------------------------
i manLeu1.NW_012105087v1          C 0 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016816432v1             131732 895 +    307276 I
e colAng1.NW_012114988v1            3754829 73 -   3775709 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e ponAbe2.chr1                    107379003  0 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=17993.000000
s hg38.chr1_KI270711v1_random         36795 30 +     42210 tatatatata---------------------------caaataCACTCTAAAAAACC
s panTro5.chr1                    208025170 38 - 228573443 tatatatatatata-----------------cacacacacacacacTCTAAAAA--C
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159040 34 - 229774977 tatatatata---------------------catatatacaCACACTCTAAAAA--C
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3829415 38 -   8455952 cacacacatatata-----------------tatataCACACACACTCTAAAAA--C
i gorGor5.CYUI01015145v1          C 0 C 0
s ponAbe2.chrUn                    11431635 29 +  72422247 tatatatata---------------------------tataCACACTTTAAAAAA-A
i ponAbe2.chrUn                   I 32788 C 0
s nomLeu3.chr24_GL397604_1_random    285025 57 +    297174 tatatatatatatagtatatatgtgtgtgtgtatacatatatacactctaaaaaaaa
i nomLeu3.chr24_GL397604_1_random I 22 C 0
s manLeu1.NW_012105087v1             943448 22 +   1325925 ---------------------------------TATATATATACACTCCAAAAA--T
i manLeu1.NW_012105087v1          C 0 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016816432v1             131732 895 +    307276 I
e colAng1.NW_012114988v1            3754829 73 -   3775709 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    103768982 3663 - 225584828 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=5600.000000
s hg38.chr1_KI270711v1_random         36825 2 +     42210 CC
s panTro5.chr1                    208025208 2 - 228573443 CC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159074 2 - 229774977 CC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3829453 2 -   8455952 CC
i gorGor5.CYUI01015145v1          C 0 C 0
s ponAbe2.chrUn                    11431664 2 +  72422247 CC
i ponAbe2.chrUn                   C 0 C 0
s nomLeu3.chr24_GL397604_1_random    285082 2 +    297174 cc
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121948654 2 + 225584828 CC
i rheMac8.chr1                    I 11850 C 0
s manLeu1.NW_012105087v1             943470 2 +   1325925 CC
i manLeu1.NW_012105087v1          C 0 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016816432v1             131732 895 +    307276 I
e colAng1.NW_012114988v1            3754829 73 -   3775709 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=265437.000000
s hg38.chr1_KI270711v1_random         36827 100 +     42210 TTTGTTGGAAATAAATAT---ATCTCTTATATTGTGGTTTCTTTTAATGTTCTCTTAATGTTCCCTG-TTTGGAGATAACGATAGATAATCTTCAAAAAGGTGA
s panTro5.chr1                    208025210  99 - 228573443 TTTGTTGGAAATAAATATGATATCTCCTATATTGTGGTTTCTTTTTATGTTCTCTTAATATTCCCTG-TTTGGAGATAACGATA----ATCTTCAAAAAGGTGA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159076 103 - 229774977 TTTGTTGGAAATAAATATGATATCTCCTATATTGTGGTTTCTTTTTATGTTCTCTTAATGTTCCCTG-TTTGGAGATAACGATAGATAATCTTCAAAAAGGTGA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3829455 103 -   8455952 TTTGTTGGAAACAAATATGATATCTCCTATATTGTGGTTTCTTTTTACGTTCTCTTAATGTTCCCTG-TTTGGAGATAACGATAGATAATCTTCAAAAAGGTGA
i gorGor5.CYUI01015145v1          C 0 C 0
s ponAbe2.chrUn                    11431666  98 +  72422247 TTTGTTGGAGATAAATAT---ATCTCCTATATTGTGGCTTCTTTTTATGTTCTCTTAATGTTCCCTA-TTAGGAG--AATGATAGATAATCTTCAAAAAGGtga
i ponAbe2.chrUn                   C 0 C 0
s nomLeu3.chr24_GL397604_1_random    285084  98 +    297174 tttgttggagataaatat---atctcctatattgtggcttctatttacgttctcttaatgTTCCCTA-TTAGGAA--AACGATAGATAATCTTCAAAAAGGTGA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121948656 102 + 225584828 TTTGTTGGAGATAAATATGATATCTCCTATAT--TGGCTTCTTTTTATGTTCTATTAATGCTCCCTATTTTGGACATAAAGATAAATAATCTTCAAAAAGGTGA
i rheMac8.chr1                    C 0 I 460
s manLeu1.NW_012105087v1             943472 104 +   1325925 TTTGTTGGAGATAAATATGATATCTCCTATATTATGGCTTCATTTTATGTTCTATTAATGCTCCCTATTTTGGACATAAAGATAAATAATCTTCAAAAAGGTGA
i manLeu1.NW_012105087v1          C 0 I 457
s colAng1.NW_012114988v1            3754902 103 -   3775709 TTTCTTGGAGATAAATATGATATCTCCTATATTGTAGTTTCCTTTTATGTTCTCTTAATGTTCCCTA-TTTGGAGATAATGATAGATAATCTTCAAAAAGGTGA
i colAng1.NW_012114988v1          I 73 I 1185
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016816432v1             131732 895 +    307276 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=6825.000000
s hg38.chr1_KI270711v1_random         36927 5 +     42210 ATATa
s panTro5.chr1                    208025309 5 - 228573443 ATATa
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159179 5 - 229774977 ATATa
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3829558 5 -   8455952 ATATa
i gorGor5.CYUI01015145v1          C 0 C 0
s ponAbe2.chrUn                    11431764 5 +  72422247 atata
i ponAbe2.chrUn                   C 0 I 1057
s nomLeu3.chr24_GL397604_1_random    285182 5 +    297174 ATATA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016816432v1             131732 895 +    307276 I
e colAng1.NW_012114988v1            3755005 1185 -   3775709 I
e manLeu1.NW_012105087v1             943576 457 +   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    121948758 460 + 225584828 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=8212.000000
s hg38.chr1_KI270711v1_random         36932 11 +     42210 cacacccacac
s panTro5.chr1                    208025314 11 - 228573443 cacacccacac
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159184 11 - 229774977 cacacccacac
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3829563 11 -   8455952 cacacccacac
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    285187 11 +    297174 TATATACACAC
i nomLeu3.chr24_GL397604_1_random C 0 I 790
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016816432v1             131732 895 +    307276 I
e colAng1.NW_012114988v1            3755005 1185 -   3775709 I
e manLeu1.NW_012105087v1             943576 457 +   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    121948758 460 + 225584828 I
e ponAbe2.chrUn                    11431769 1057 +  72422247 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=11007.000000
s hg38.chr1_KI270711v1_random         36943 38 +     42210 ccacccacacac------acacacacacacacacacacacacac
s panTro5.chr1                    208025325 34 - 228573443 ccac----acac------acacacacacacacacacacacacGT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159195 30 - 229774977 ccac--------------ccacacacatacacacacacacacGT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3829574 44 -   8455952 ccacccacacacatatatatatacacacgcacacacacacaGGT
i gorGor5.CYUI01015145v1          C 0 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016816432v1             131732 895 +    307276 I
e colAng1.NW_012114988v1            3755005 1185 -   3775709 I
e manLeu1.NW_012105087v1             943576 457 +   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211914053 808 + 227556264 I
e rheMac8.chr1                    121948758 460 + 225584828 I
e ponAbe2.chrUn                    11431769 1057 +  72422247 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C
e nomLeu3.chr24_GL397604_1_random    285198 790 +    297174 I

a score=21132.000000
s hg38.chr1_KI270711v1_random         36981 18 +     42210 GAGCCACCGGATCCAGCC
s panTro5.chr1                    208025359 18 - 228573443 GAGCCACCAGACCCAGCC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159225 18 - 229774977 GAGCCACCAGACCCAGCC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3829618 18 -   8455952 GAGCCACCAGACCCAGCC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    285988 18 +    297174 gagccactgcacccagcc
i nomLeu3.chr24_GL397604_1_random I 790 C 0
s macFas5.chr1                    211914861 18 + 227556264 gagccactgcgcccagcc
i macFas5.chr1                    I 808 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016816432v1             131732 895 +    307276 I
e colAng1.NW_012114988v1            3755005 1185 -   3775709 I
e manLeu1.NW_012105087v1             943576 457 +   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e rheMac8.chr1                    121948758 460 + 225584828 I
e ponAbe2.chrUn                    11431769 1057 +  72422247 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=5922.000000
s hg38.chr1_KI270711v1_random         36999 3 +     42210 tgt
s panTro5.chr1                    208025377 3 - 228573443 tgt
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159243 3 - 229774977 tgt
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3829636 3 -   8455952 tgt
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286006 3 +    297174 tgt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211914879 3 + 227556264 tgt
i macFas5.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             944033 3 +   1325925 tgt
i manLeu1.NW_012105087v1          I 457 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016816432v1             131732 895 +    307276 I
e colAng1.NW_012114988v1            3755005 1185 -   3775709 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e rheMac8.chr1                    121948758 460 + 225584828 I
e ponAbe2.chrUn                    11431769 1057 +  72422247 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=103002.000000
s hg38.chr1_KI270711v1_random         37002 55 +     42210 tgaatttatttctaagcacaacatgtatttagatgttacttgaaatgaaattgta
s panTro5.chr1                    208025380 52 - 228573443 tgaatttatttataagcaca---tgtatttagatgttacttgaaatgaaattgta
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159246 52 - 229774977 tgaatttatttataagcaca---tgtatttagatgttacttgaaatgaaattgta
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3829639 52 -   8455952 tgaatttatttataagcaca---tgtatttagatgttacttgcaatgaaattgta
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286009 55 +    297174 tgaatttatttataaccacaacatgtatttagatgttaatttaaattaaattgta
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121949218 55 + 225584828 tgaatttatttctaagcacatcatgtatttagaagttactttaaatgaaattgta
i rheMac8.chr1                    I 460 C 0
s macFas5.chr1                    211914882 53 + 227556264 tgaatttatttataagaaaa-catgtatttagatgttactttaaatgacactgt-
i macFas5.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             944036 55 +   1325925 tgaatttatttctaagcacgtcatgtatttagaagttactttaaatgaaattgta
i manLeu1.NW_012105087v1          C 0 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016816432v1             131732 895 +    307276 I
e colAng1.NW_012114988v1            3755005 1185 -   3775709 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e ponAbe2.chrUn                    11431769 1057 +  72422247 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=549452.000000
s hg38.chr1_KI270711v1_random         37057 209 +     42210 tttttatttcattttccaaatgctcattgctaatacacagaaatacaaaagac--tacttctattgagcttatattctgca--acattaccaaactcactaattagttttggcagatttttatagatttctaggattattaacatacacagtcattatctgtgaataa-gacagcttcaattctttcttttcaatcttttcaatacttttattt----
s panTro5.chr1                    208025432 204 - 228573443 tttttatttcattttccaaatgctcattgctaatacacagaaatacaaaagac--tacttctattgagcttatattctgca--acattaccaaactcactaattagttttggcagatttttgcagatttctaggattattaacatacacagtcattatctgtgaataa--agagcctcaattctttcttttcaatcttttcaatactttt--------
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159298 206 - 229774977 tttttatttcattttccaaatgctcattgctgatacacagaaatacaaaagac--tacttctattgagcttatattctgca--acattaccaaactcactaattagttttggcagatttttgcagatttctaggattattaacatacacagtcattatctgtgaataaagacagcttcaattctttcttttcaatcttttcaatactttt--------
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3829691 206 -   8455952 tttttatttcattttccaaatgctcattgctaatacacagaaatacaaaagac--tacttctattgagcttatattctgca--acattaccaaactcactaattagttttggcagatttttgcagatttctaggattattaacatacacagtcattatctgtgaataaagacagcttcaattctttcttttcaatcttttcaatactttt--------
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286064 206 +    297174 tttttatttcattttccaaatgctcattgctaatatacagaaatacaaaagac--tacttatattgagcttatattctgca--gcactaccaaactcactaattagttttgggagatttttgtagatttctaggattgttaatatacacagacattatctgtgaataaagacagcttcaattctttattttcaatcttttcaatactttt--------
i nomLeu3.chr24_GL397604_1_random C 0 I 4
s rheMac8.chr1                    121949273 209 + 225584828 tttttatttcattttccaaatgctcattgctaatatacagaaacacaacatactatatttatattgaacttatattcagcaatacattgccaaaataac-----agtttttgtagatttttgtagatttctaggattgtttacgtacacaatcattatctgtgaataaagacagcttcaattctttcatttcagtcttttcaatgctttt----attt
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211914935 210 + 227556264 tttttacttctttttgcaaatgctcgttgctaatatacagaaatacacaagac--tacttatatcgagcttatattctgta--acattatcaaactcactaattacttttggtagatttttgtagatttctaggattattaacatacacagccattatctgtgaataaagacaatttcaattctttcttttcaatcttttcaatactttt----attt
i macFas5.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             944091 211 +   1325925 tttttatttcattttccaaatgctcattgctaatatacagaaacacaacatactatatttatattgaacttacatttagcaatacattgccaaaataac---ttaggttttgtagatttttgtagatttctaggattgtttacgtacacaatcattatctgtgaataaagacagcttcaattctttcatttcagtcttttcaatgccttt----attt
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3756190 210 -   3775709 tttttacttcattttcaaaatgctcgttgctagtacacagaaatacacaagac--tacttatactgagcttatattctgta--acattatcaaactcactaattaattttggtagatttttgtagatttctaggattattaccatacacagccattatttgtgaataaagacaacttcaattctttcttttcaatcttttcaatactttt----attt
i colAng1.NW_012114988v1          I 1185 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016816432v1             131732 895 +    307276 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e ponAbe2.chrUn                    11431769 1057 +  72422247 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=4095.000000
s hg38.chr1_KI270711v1_random         37266 1 +     42210 a
s panPan2.chr1                    208159504 1 - 229774977 a
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3829897 1 -   8455952 a
i gorGor5.CYUI01015145v1          C 0 C 0
s ponAbe2.chrUn                    11432826 1 +  72422247 a
i ponAbe2.chrUn                   I 1057 C 0
s nomLeu3.chr24_GL397604_1_random    286274 1 +    297174 a
i nomLeu3.chr24_GL397604_1_random I 4 C 0
s rheMac8.chr1                    121949482 1 + 225584828 a
i rheMac8.chr1                    C 0 I 11
s macFas5.chr1                    211915145 1 + 227556264 a
i macFas5.chr1                    C 0 I 8
s manLeu1.NW_012105087v1             944302 1 +   1325925 a
i manLeu1.NW_012105087v1          C 0 I 11
s colAng1.NW_012114988v1            3756400 1 -   3775709 a
i colAng1.NW_012114988v1          C 0 C 0
s rhiBie1.NW_016816432v1             132627 1 +    307276 a
i rhiBie1.NW_016816432v1          I 895 I 232
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e panTro5.chr1                    208025636 0 - 228573443 C
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=7644.000000
s hg38.chr1_KI270711v1_random         37267 3 +     42210 ttt
s panPan2.chr1                    208159505 3 - 229774977 ttt
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3829898 3 -   8455952 ttt
i gorGor5.CYUI01015145v1          C 0 C 0
s ponAbe2.chrUn                    11432827 3 +  72422247 ttt
i ponAbe2.chrUn                   C 0 N 0
s nomLeu3.chr24_GL397604_1_random    286275 3 +    297174 ttt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121949494 3 + 225584828 ttt
i rheMac8.chr1                    I 11 C 0
s manLeu1.NW_012105087v1             944314 3 +   1325925 ttt
i manLeu1.NW_012105087v1          I 11 C 0
s colAng1.NW_012114988v1            3756401 3 -   3775709 ttt
i colAng1.NW_012114988v1          C 0 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e panTro5.chr1                    208025636 0 - 228573443 C
e rhiBie1.NW_016816432v1             132628 232 +    307276 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e macFas5.chr1                    211915146 8 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=594917.000000
s hg38.chr1_KI270711v1_random         37270 230 +     42210 ttcttactttattgcattgatttagatctctagtataatgctgaattgaaagaataacaacagatattctac--ttttttctctgatttaatagaaaagcattcaatcctatgccatttaatataatgttacctctgagtttttttcaaatctacccttaatagggttgaaagtgttgccttctcttcttatcatgctgagagttttctggggtttgtttttat--aaatcatg
s panTro5.chr1                    208025636 228 - 228573443 ttcttactttattgcactgatttagatctctaatataatgctgaattgaaagaataacaacagatattctac--ttttttatctgatttaatagaaaagcattcaatcccatgccatttaatataatgttacctgtgagtttttttcaaatctacccttaatagagttggaagtgttgccttctcttcttatcacgctgag--ttttctggggtttgtttttat--aaatcatg
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159508 229 - 229774977 ttcttactttattgcactgatttagatctctagtataatgctgaattgaaagaataacaacagatattctac-tttttttatctgatttaatagaaaagcattcaatcccatgccatttaatataatgttacctgtgagtttttttcaaatctacccttaatagagttggaagtgttgccttctcttcttatcatgctgag--ttttctggggtttgtttttat--aaatcatg
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3829901 230 -   8455952 ttcttactttattgcattgatttagatctctagtataatgctgaattgaaagaataacaacagatattctac--ttttttctctgatttaatagaaaagcattcaatcctgtgccatttaatataatgttacctgtgagtttttttcaaatctacccttaatagggttgaaagtgttgccttctcttcttatcatgctgagagttttctggggtttgtttttat--aaatcatg
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286278 228 +    297174 ttcttactttattgcattgatttagagctctagtgtaatgctgaattgaaagagtaacaacagatattctac--ttttttctctgatttaatggaaaagcattcaatcttatgccatttaatataatgttacctgtggg--tttttcaaatctgcccttaatggggttggaagtgttgccttctgttcttatcaggctgagagttttctggggtttgtttttat--aaatcatg
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121949497 230 + 225584828 tttaaacttcattgcattggttaagatgtctagtataatgctggattaaaagagtaatggaagatattctacctttttttctctgattttatacaaaagcatttgaccatatgccattcaatataatgtcacctgtagg--tttttcaaatttgcccttagtggggttggaagtgttgccttctgttcttattatgctgagagttttgaggggtttgtattttt--tcatcttg
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211915154 223 + 227556264 -----accttattgcattt----agatctctagtataatgctgaattgaaagtgtaccaatagatattctac--ttttttctctgatttaatagaaaagcattcaattttatgccatttaatataatgttacctgtgagtttttttcaaatctatccttaatggggttagaagtgttgccttctgtttttatcatgctgagagttttctgggatttgtttttataaaaatcatg
i macFas5.chr1                    I 8 C 0
s manLeu1.NW_012105087v1             944317 230 +   1325925 ttttaacttcattgcattggttaagatctctagtataatgctggattaaaagagtaacggaagatattctccttttttttctctgattttatacaaaagcatttgaccatatgccattcaatataatgtcacctgtagg--tttttcaaatttgcccttagtagggttggaagtgttgccttctgttcttattatgctgagagttttgaggggtttgtattttt--tcaccttg
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3756404 232 -   3775709 ttcttaccttattgcattgatttagatctctactataatgctgaattgaaagtgtaccaacagatattctac--ttttttctctgatttaaaagaaaagcatgcaattttatgccatttaatataatgttacctgtgagtttttttcaaatctatccttaatggggttggaggtgttgccttctgttcttatcctgctgagagttttctggggtttgtttttataaaaatcatg
i colAng1.NW_012114988v1          C 0 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016816432v1             132628 232 +    307276 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=5005.000000
s hg38.chr1_KI270711v1_random         37500 1 +     42210 a
s panTro5.chr1                    208025864 1 - 228573443 a
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159737 1 - 229774977 a
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3830131 1 -   8455952 a
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286506 1 +    297174 a
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121949727 1 + 225584828 a
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211915377 1 + 227556264 a
i macFas5.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             944547 1 +   1325925 a
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3756636 1 -   3775709 a
i colAng1.NW_012114988v1          C 0 C 0
s rhiRox1.KN298737v1                  72908 1 -   1066715 a
i rhiRox1.KN298737v1              N 0 I 101
s rhiBie1.NW_016816432v1             132860 1 +    307276 a
i rhiBie1.NW_016816432v1          I 232 I 101
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=147199.000000
s hg38.chr1_KI270711v1_random         37501 51 +     42210 aaaaagttttcaattgtgccaaatgcttttactgtgtatgacaaggtaatc
s panTro5.chr1                    208025865 51 - 228573443 aaaaagttttcaattttgccaaatgcttttactgtgtatgacaaggtaacc
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159738 51 - 229774977 aaaaagttttcaattttgccaaatgcttttactgtgtatgacaaggtaatc
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3830132 51 -   8455952 aaaaagttttcaattttgccaaatgcttttactgtgtattacaaggtaatc
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286507 51 +    297174 aaaaagttttcaattttgccaaatgcttttactgtgtatgacaaggcaatc
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121949728 51 + 225584828 aaaaagtttccaattttaccaaatactttttctgtgtatgtcaaggcaatc
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211915378 51 + 227556264 aaaaagttttcaattttgccaaatgcttttactgtgtatgataaggttatc
i macFas5.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             944548 51 +   1325925 aaaaagtttccaattttatcaaatacttcttctgtgtatgtcaaggcaatc
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3756637 51 -   3775709 aaaaagttttcaattttgccaaatgcttttactgtgtatgataaggttatc
i colAng1.NW_012114988v1          C 0 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e rhiBie1.NW_016816432v1             132861 101 +    307276 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e rhiRox1.KN298737v1                  72909 101 -   1066715 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=134326.000000
s hg38.chr1_KI270711v1_random         37552 44 +     42210 atatggtttttctcttttgccctgataatacataacattacatt----
s panTro5.chr1                    208025916 44 - 228573443 atacggtttttctcttttgccctgataatatataacattacatt----
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159789 44 - 229774977 atacggtttttctcttttgccctgataatatataacattacatt----
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3830183 44 -   8455952 atacggtttttctcttttgccctgataatatataacattagatt----
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286558 44 +    297174 atacagtttttctcttttgccctgataatatataaaattatatt----
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121949779 44 + 225584828 atatgatttttctcttttgtcctgataatatagagtattatatt----
i rheMac8.chr1                    C 0 I 6
s macFas5.chr1                    211915429 42 + 227556264 atatggtttttctcttttgccctgataatatataaaattata------
i macFas5.chr1                    C 0 I 1
s manLeu1.NW_012105087v1             944599 44 +   1325925 atatgatttttctcttttgtcctgataatatagagtattatatt----
i manLeu1.NW_012105087v1          C 0 I 18
s colAng1.NW_012114988v1            3756688 44 -   3775709 ctacggtttttctcttttgccctgataatatacaaaattatatt----
i colAng1.NW_012114988v1          C 0 C 0
s calJac3.chr18                     3671294 48 +  47448759 ATGCAGTCTTTCTCTTTTGTACTGATAATATGGAGGATTATTTGGGGT
i calJac3.chr18                   I 2358 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e rhiBie1.NW_016816432v1             132861 101 +    307276 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e rhiRox1.KN298737v1                  72909 101 -   1066715 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=8790.000000
s hg38.chr1_KI270711v1_random         37596 2 +     42210 TT
s panTro5.chr1                    208025960 2 - 228573443 TT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159833 2 - 229774977 TT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3830227 2 -   8455952 tt
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286602 2 +    297174 TC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121949829 2 + 225584828 tt
i rheMac8.chr1                    I 6 I 1
s macFas5.chr1                    211915472 2 + 227556264 tt
i macFas5.chr1                    I 1 I 1
s colAng1.NW_012114988v1            3756732 2 -   3775709 TT
i colAng1.NW_012114988v1          C 0 C 0
s rhiRox1.KN298737v1                  73010 2 -   1066715 tt
i rhiRox1.KN298737v1              I 101 C 0
s rhiBie1.NW_016816432v1             132962 2 +    307276 tt
i rhiBie1.NW_016816432v1          I 101 C 0
s calJac3.chr18                     3671342 2 +  47448759 TT
i calJac3.chr18                   C 0 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e manLeu1.NW_012105087v1             944643 18 +   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=-5441.000000
s hg38.chr1_KI270711v1_random         37598 3 +     42210 -CTT
s panTro5.chr1                    208025962 3 - 228573443 -TTA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159835 3 - 229774977 -TTA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3830229 3 -   8455952 -tta
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286604 2 +    297174 -TT-
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121949832 2 + 225584828 -tt-
i rheMac8.chr1                    I 1 I 1
s macFas5.chr1                    211915475 2 + 227556264 -tt-
i macFas5.chr1                    I 1 I 1
s nasLar1.chr1                    110529230 2 - 215897965 -cT-
i nasLar1.chr1                    I 4851 N 0
s colAng1.NW_012114988v1            3756734 2 -   3775709 -TT-
i colAng1.NW_012114988v1          C 0 C 0
s rhiRox1.KN298737v1                  73012 2 -   1066715 -TT-
i rhiRox1.KN298737v1              C 0 I 1
s rhiBie1.NW_016816432v1             132964 2 +    307276 -TT-
i rhiBie1.NW_016816432v1          C 0 I 1
s calJac3.chr18                     3671344 3 +  47448759 TCT-
i calJac3.chr18                   C 0 C 0
e manLeu1.NW_012105087v1             944643 18 +   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=-4580.000000
s hg38.chr1_KI270711v1_random         37601 7 +     42210 --AAATAT-A
s panTro5.chr1                    208025965 7 - 228573443 --AAATAT-A
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159838 7 - 229774977 --AAATAT-A
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3830232 7 -   8455952 --aaatat-a
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286606 7 +    297174 --AAATAT-A
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121949835 6 + 225584828 --aaGCAT--
i rheMac8.chr1                    I 1 C 0
s macFas5.chr1                    211915478 6 + 227556264 --aatata--
i macFas5.chr1                    I 1 C 0
s colAng1.NW_012114988v1            3756736 7 -   3775709 --AAATACA-
i colAng1.NW_012114988v1          C 0 C 0
s rhiRox1.KN298737v1                  73015 6 -   1066715 --AAGTAT--
i rhiRox1.KN298737v1              I 1 C 0
s rhiBie1.NW_016816432v1             132967 6 +    307276 --AAGTAT--
i rhiBie1.NW_016816432v1          I 1 C 0
s calJac3.chr18                     3671347 7 +  47448759 GAAAATA---
i calJac3.chr18                   C 0 I 1
e manLeu1.NW_012105087v1             944643 18 +   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=181754.000000
s hg38.chr1_KI270711v1_random         37608 35 +     42210 AAAAAGATTTCTTGAATCAAGCTAGGACAGTTTTT
s panTro5.chr1                    208025972 35 - 228573443 AAAAAGATTTCTGGAATCAAGCTAGGACAGTTTTT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159845 35 - 229774977 AAAAAGATTTCTGGAATCAAGCTAGGACAGTTTTT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3830239 35 -   8455952 aaaAAGATTTCTGGAATCAAGCTGGGACAGTTTTT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286613 35 +    297174 AAAAAGATTTCTTGAATCAAGCTAGGACAGTTTTT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    121949841 35 + 225584828 AAAAAGATTTATTGAATCAAGCTATGACAGTTTTT
i rheMac8.chr1                    C 0 n 0
s macFas5.chr1                    211915484 35 + 227556264 aaaAAGATTTCTTGAATCAAGCCAGGACACTTTTT
i macFas5.chr1                    C 0 C 0
s manLeu1.NW_012105087v1             944661 35 +   1325925 AAAAAGATTTATTGAATCAAGCTATGACAGTTTTT
i manLeu1.NW_012105087v1          I 18 n 18
s colAng1.NW_012114988v1            3756743 35 -   3775709 AAAAAGATTTCTTGAATCAAGCCAGGACAGTTTTT
i colAng1.NW_012114988v1          C 0 C 0
s rhiRox1.KN298737v1                  73021 35 -   1066715 AAAAAGATTTATTGAATCAAGCTATGACAGTTTTT
i rhiRox1.KN298737v1              C 0 I 4
s rhiBie1.NW_016816432v1             132973 34 +    307276 -AAAAGATTTATTGAATCAAGCTATGACAGTTTTT
i rhiBie1.NW_016816432v1          C 0 N 0
s calJac3.chr18                     3671355 35 +  47448759 AAAAAGATTTATTGAATAAAACTATGACAGTTTTA
i calJac3.chr18                   I 1 C 0
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=44748.000000
s hg38.chr1_KI270711v1_random         37643 24 +     42210 -TTAATTATAAAC--TTTTAACAAATA
s panTro5.chr1                    208026007 24 - 228573443 -TTAATTATAAAC--TTTTAACAAATA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159880 24 - 229774977 -TTAATTATAAAC--TTTTAACAAATA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3830274 24 -   8455952 -TTAATTATAAAC--TTTTAACAAATA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286648 24 +    297174 -TTAATTATAAAC--TTTTAACAAATA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211915519 23 + 227556264 -TTAATTATAAAA---TTTAACAAATA
i macFas5.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3756778 23 -   3775709 -TTAATTATAAAA---TTTAACAAATA
i colAng1.NW_012114988v1          C 0 C 0
s rhiRox1.KN298737v1                  73060 26 -   1066715 -AATATTTTAAACTGttttaacaacta
i rhiRox1.KN298737v1              I 4 N 0
s calJac3.chr18                     3671390 27 +  47448759 AAATATTTTATACTGtttttacaactg
i calJac3.chr18                   C 0 C 0
e manLeu1.NW_012105087v1             944696 18 +   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e rheMac8.chr1                    121949876  0 + 225584828 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=135690.000000
s hg38.chr1_KI270711v1_random         37667 82 +     42210 TGTTGAAATATAACTTACATGCAATTGAGATGCATGAAAGTGTATAATC------ATTAAAGT-------------GTATAATTTTAAGAGTTTGAGCACA
s panTro5.chr1                    208026031 95 - 228573443 TATTGAAATATAACTTACATGCAATTGAGATGCATGAAAGTGTATAATC------ATTAAAGTATATAATTAAAGTGTATAATTTTAGGAGTTTGAGCACA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159904 95 - 229774977 TATTGAAATATAACTTACATGCAATTGAGATGCATGAAAGTGTATAATC------ATTAAAGTGTATAATTAAAGTGTATAATTTTAAGAGTTTGAGCACA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3830298 82 -   8455952 TATTGAAATATAACTTACATGCAATTGAGATGCATGGAAGTGTATAATC------ATTAAAGT-------------GTATAATTTTAAGAGTTTGAGCACA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286672 95 +    297174 TAGTGAAATATAACTTACATGCAATTGAGATGCATTAAAGTGTATAATC------ATTAAAGTGTATAATTAAACTGTATAATTTTAAGAGTTTGAGCACA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211915542 99 + 227556264 TATCGAAATATAAATTACATGCAATTGAGATTTATTAAA--GTATAATCAAGTATATTAATGTGTATAATTAAAGTGTATAATTTTAAGAGCTTGAGCACA
i macFas5.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3756801 95 -   3775709 TATCGAAATATAAATTACAGGCAATTTAG----ATTAAA--GTATAATGAAGTATATTAAAGTGTATAAGTAAAGTGTATAATTTTAAAAGCTTGAGCACA
i colAng1.NW_012114988v1          C 0 I 1
s calJac3.chr18                     3671417 68 +  47448759 tactgagatacaatctacacacaa-------------------------------att--tgcacataattaaactttgtgaatttaaaagtttgaacata
i calJac3.chr18                   C 0 N 0
e manLeu1.NW_012105087v1             944696 18 +   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e rheMac8.chr1                    121949876  0 + 225584828 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=375.000000
s hg38.chr1_KI270711v1_random         37749 1 +     42210 C
s panTro5.chr1                    208026126 1 - 228573443 G
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208159999 1 - 229774977 G
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3830380 1 -   8455952 G
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286767 1 +    297174 G
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211915641 1 + 227556264 G
i macFas5.chr1                    C 0 C 0
e colAng1.NW_012114988v1            3756896 1 -   3775709 I
e manLeu1.NW_012105087v1             944696 18 +   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e rheMac8.chr1                    121949876 0 + 225584828 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287 0 -  14060431 C

a score=308996.000000
s hg38.chr1_KI270711v1_random         37750 175 +     42210 TATACACGAGTCAAAGAGAAAGGACAGAAAATACTAACGatggctcagcacatgtggtctatcttgctgaatgctctatgtgagtttgagaagagttatttgttagctgttcttagatgtattttgcttaaatatcGACCTGGCTAACATGTGTCATTGATTGTGTGAATTAATT
s panTro5.chr1                    208026127 175 - 228573443 TATACACGAGTCAAAGAGAAAGGACAGAAAATACTAAGGatggctcagcatatgtggtctatcttggtgaatgctctatgtgagtttgaggagagttatttgttagctgttcttagatgtattttgcttaaatgtcGTCTTGGCTAACTTGTGTCATTGATTGTGTGAATTAATT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208160000 175 - 229774977 TATACATGAGTCAAAGAGAAAGGACAGAAAATACTAAGGatggctcagcatatgtggtctatcttggtgaatgctctatgtgagtttgaggagagttatttgttagctgttcttagatgtattttgcttaaatgtcgacttggctaacttgtgtcattgattgtgtGAATTAATT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3830381 173 -   8455952 TATACACGAGTCAAAGAGAAAGGACAGAAAATACTAAGGatggctcagcatatgtggtctatcttgctgaatgctctatgtgagtttgaggagagttatttgttagctgttcttagatgtattttgcttaa--gtcgacttggctAACTTGTGTCATTGATTGTGTGAATTAATT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286768 175 +    297174 TATACACGAGCCAAAGAGAAAGGACAGAAAACACTAAGtatgtctcagcatatgtggtctatcttggtgaatgttctatgtgagtttaagaagagttatttgttagctgttcttagatgtattttgcttaaatgtcgacttggctaacttgtgtcattgattgtgtGAATTAATT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211915642 175 + 227556264 TATACACAAGTCAAAGAGACATGACAGAAAATACTAAGGATTCCTCAGCATatgtgatttatcttggtgaatgttctatgtgagtttgagaagagttatttgttagctgttcttagatgtattttgcttaaatgtcgacttgactagcttgtgtcattgattgtgtgaattaatt
i macFas5.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3756897 175 -   3775709 TATACACAACTCAAAGAGAAATGACAGAAAATACTAAGGATTCCTCAGCATatgtgatttatcttggtgaatgttctatgtgagtctgagaagagttatttgttagctgttcttagatgtattttgcttaaatgtcaacttggctaacttgtgtcattgattgtgcgaattaatt
i colAng1.NW_012114988v1          I 1 C 0
e manLeu1.NW_012105087v1             944696  18 +   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e rheMac8.chr1                    121949876   0 + 225584828 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=650024.000000
s hg38.chr1_KI270711v1_random         37925 355 +     42210 TTGTTCTAGTGGGCAGTAAAATTACTGTCTGATC----ACTTTGGACTTATGTGGAC-TGG-TTTATGTTTTATTACAACGGATTCATGGAAAGCCCACAGCATTTCCCAAGACCCTCTAATTTGGCAGGACTCAATCACCAATCCACCCCTTTGT------GAATTT-GTCAGGGTTTGCTTTTAGGCTTTAGCA-GGTTGGTCTACAATAGGCCTTATTGAAAAGTGTGACACTTATTCCTAAAGCACATCCATTCTAGTGTCTCAGTTGGATACCTGGG-TGCTAATGAGGTGTGCATGAGTTCTTCCCACCATGGATGGCAGAAACTCCAT--CATACATTCCCCAACCCTCCTCCACCTCAAGTACC
s panTro5.chr1                    208026302 359 - 228573443 TTGCTCTAGTGGGC-GTAAAATTACTGCCTGATCGATCACTTTGGACTTATGTGGAC-TGG-TTTATGTTTTATTACAACGGATTCATGGAAAGCCCACAGAATTTCCCAAGACCCTCTAATTTGGCAGGACTCAATCACCAAACCACCCCTTTGT------GGATTTTGTCAGGGTTTGGCTTTAGGCTTTACCA-GGTTGGTGAACAATAGGCCTTATTGAAAAGTGTGACACTTATTCCTAAAGCACATCCATTCTAGTGTCTCAGTTGGATACCTGGG-TGCTAATGAGGTGTGCATGAGTTCTTCCCACCATGGATGGCAGAAACTCCAT--CATACATTCCCGAACCCTCCTCCACCTCAAGTACC
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208160175 359 - 229774977 TTGCTCTAGTGGGC-GTAAAATTACTGTCTGATCGATCACTTTGGACTTATGTGGAC-TGG-TTTATGTTTTATTACAACGGATTCATGGAAAGCCCACAGAATTTCCCAAGACCCTCTAATTTGGCAGGACTCAATCACCAATCCACCCCTTTGT------GGATTTTGTCAGGGTTTGGCTTTAGGCTTTACCA-GGTTGGTGAACAATAGGCCTTATTGAAAAGTGTGACACTTATTCCTAAAGCACATCCATTCTAGTGTCTCAGTTGGATACCTGGG-TGCTAATGAGGTGTGCATGAGTTCTTCCCACCATGGATGGCAGAAACTCCAT--CATACATTCCCCAACCCTCCTCCACCTCAAGTACC
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3830554 359 -   8455952 TTGCTCTAGTGGGT-GTAAAATTACTGTCTGATGGATCACTTTGGACTTATGTGGAC-TGG-TTTATGTTTTATTACAATGGATTCACGGAAAGCCCACAGAATTTCCCAAGACCCTCTAATTTGGCAGGACTCAATCACCAATCCACCCCTTTGT------GGATTTTGTCAGGGTTTGGTTTTAGGCTTTACCA-GGTTGGTGAACAATAGGCCTTATTGAAAAGTGTGACACTTATTCCTAAAGCACATCCATTCTAGTGTCTCAGTTGGATACCTGGG-TGCTAATGAGGTGTGCATGAGTTCTTCCCACCGTGGATGGCAGAAACTCCAT--CATATATTCCCCAACCCTCCTCCACCTCAAGTACC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286943 358 +    297174 TTGTTCTAGTGGGCAGTAAAATTACTGTCTGATC----ACATTGGACTTATGTGGACTTGG-TTTATGTTTTATTACAGTGGATTCATGGAAAGCCAAAAGCATTTCCCAAGACTTTCTAATTTGGTAGGACTCAATCACCAATCCACCCCTTTGT------GGATTTTGTCAGGATTTGGTTTTAGGCTTTACTAGGGCTGGTCTAGAATAGGCCTTATTGTAAAGCATGACACTTATTCCTAAAGCACAGCCTTTCTAGTGTCTCAGTTGGATACCTGGA-TGCTAATGAGGTGTAAATGAGTTCTTCCCACCCTGGATGGCAGGAACTCCAT--CATCCATTCCCCAACCCTTCTCCACCACAAGTACC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211915817 351 + 227556264 ttgttctAGTGGGCAGGAAAATTACTGTCTGATC----ACTTTGGACTTATGTGGACTTGG-TTTATGTTTTATTAAAATGAATGCATGGAAAGCCCACAGCATTTCCCAAGACCCTCTAATTTGG-------CAATCACCAATCCACCGCTTTGT------GGATTTTGTCAGGGTTTGGTTTTAGGCTTTATTAGGGTTGGTCTAGAATAGGCCTTACTGTAAAGTGTGACACTTATTCCTAAAGCACAGTCATTCTAGTGTCTCAGTTGGATACCCGGG-TGCTAATGAGGTGTGTGTGAGTTCTTCCCACCCTGGATGGCAGAAACTCCAT--CATCCATTCCCCAACCCTCCTCCACCTCAAGTACC
i macFas5.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3757072 351 -   3775709 ttgttctAGTGGGCACGAAAATTACTGTCTGATC----ACTTTGGACTTATGTGGACTTGG-TTTATGTTTTATTAAAATGAATTCATGGAAAGCCCGTAGCATTTCCCAAGACCCTCTAATTTGG-------CAATCACCAATCCAGCACTTTGT------GGATTTTGTCAGGGTTTGGTTTTAGGCTTTACTAGGGTTGGTCTAGAACAGGCCTTACTGTAAAGTGTGACACTTATTCCTAAAGCACAGTCCTTCTAGTGTTTCAGTTGGATACCCGGG-TGCTAATGAGGTGTGCGCGAGTTCTTCCCACCCTGGATGGCACAAACTCCAT--CATCCATTCCCCAACCCTCCTCCACCTCAAGTACC
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE935255v1                  47024 355 -    134735 ttattttAGCAGGGTTATTAATTAATGATTGAT-----AACGTGAACTTATGCAGCCTTAGTTTTGTACTTGATTAGTGCAGATAGGTGGAAAGTTCACCTTGCCTCCAAAGTCCCTCGAACTTGACAGGACTCATCCTCTAAACC----CTTCATTCCATGGAACCTTGTTGGCATTTGACTTTAGACTTTGTTAAGGTAGATTTAGAGTAGATGTTATTCCAGGGCTTGGTCCTTACTCCTAAGGTACAGACTTTCCAGTGTCTCAGCTGGATACCAGGGATGTTAATAAGGTGAACACAAGGTCTTTTCACTTT-GCTGGGACCAGTCCCAGGACTTGAGTTTTCCAAAGT-------CCTCAAGTACT
i tarSyr2.KE935255v1              N 0 C 0
e manLeu1.NW_012105087v1             944696  18 +   1325925 I
e cerAty1.NW_012001440v1            1832789 3642 -   2461138 I
e rheMac8.chr1                    121949876   0 + 225584828 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=290827.000000
s hg38.chr1_KI270711v1_random         38280 79 +     42210 TCTGGTCCAAACTC----AATTTCATAGCAGCCACCCCTCTGTTAAATCTGTTAGTCTTTTC----------------------CTTGTGCAG-----GTAGAGTCCACT
s panTro5.chr1                    208026661 79 - 228573443 TCTGGTCCAAACTC----AATTTTATAGCAGCCACCCCTCTGTTAAATCTGTTAGTCTtttc----------------------cttgtgcag-----gtacagtccagt
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208160534 79 - 229774977 TCTGGTCCAAACTC----AATTTTATAGCAGCCACCCCTCTGTTAAATCTGTTAGTCTTTTC----------------------CTTGTGCAG-----GTAGAGTCCACT
i panPan2.chr1                    C 0 M 1049
s gorGor5.CYUI01015145v1            3830913 79 -   8455952 TCTGGTCCAAACTC----AATTTTATAGCAGCCACCCCTCTGTTAAATCTGTTAGTCTTTTC----------------------CTTGTGCAG-----GTACAGTCCAGT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287301 79 +    297174 TCTGGTCCAAACTC----AACTTTATAGCAGCCACTCCTATGTTAAATCTGTTAGTCTTTTC----------------------CTTGTGCAG-----GTACACTCcagt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103772645 79 - 225584828 TCTGGTCCAAACTC----AATTTTATAGCAGCCACCCCTCTATTAAATCTGTTAGCCTtttc----------------------cttgtgcag-----gtacagtccagt
i rheMac8.chr1                    I 3663 C 0
s macFas5.chr1                    211916168 79 + 227556264 TCTGGTCCAAACTC----AATTTGACAGCAGCCACCCCTCTGTTAAATCTGTTTGTCTTTTC----------------------CTTGTGCAG-----GTACAGTCCCGT
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1836431 79 -   2461138 TCTGGTCCAAACTC----AATTTTATAGCAGCCACCCCTCTATTAAATCTGTTAGCCTtttc----------------------cttgtgcag-----gtacagtccagt
i cerAty1.NW_012001440v1          I 3642 C 0
s manLeu1.NW_012105087v1             522310 79 -   1325925 TCTGGTCCAAACTC----AATTTTATAGCAGCCACCCCTCTATTAAATCTGTTAGCCTtttc----------------------cttgtgcag-----gtacagtccagt
i manLeu1.NW_012105087v1          I 4735 C 0
s colAng1.NW_012114988v1            3757423 78 -   3775709 TCTGGTCCAAACTC----AATTTGATAGCAGCCACCCC-CTGTTAAATCTGTTTGTCTTTTC----------------------CTTGTGCGG-----GTACAGTCCCAT
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE935255v1                  47379 95 -    134735 ----GTTCAACCTCTCATATCTCCATA----CCACTCC-------AACATGGTAGTGATTGCTGTCTGGCAAGCCACAAGAGGTCTTGTGCTGCGCTTTGACAGCTCacc
i tarSyr2.KE935255v1              C 0 C 0
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=196959.000000
s hg38.chr1_KI270711v1_random         38359 69 +     42210 CCTTGATAAGTATGCACATGGAA--CCCCACATAGACTTTGAGAGCTGCACctttgatcagctgtctcctc
s panTro5.chr1                    208026740 69 - 228573443 ccttgataagtatgcacatggaa--ccccacatagactttgagagctgcacctttgatcagctgtctcctc
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3830992 69 -   8455952 CCTTGATAAGTATGCATATGGAA--ACCCACATAGACTTTGAGAGCTGCACCTTTGATCAGCTGTCTCCTC
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287380 68 +    297174 ccttgataagtatgcacatggaa--ccccacatggacttcgagagctgcccctctgaacagctgtctcct-
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103772724 68 - 225584828 ccttggtaagtatgcacatggaa--ccca-catggacatcgagagctgcccctctgaacagctgtctcctc
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211916247 69 + 227556264 CCTTGATAAGTGTGCACATGGAA--CCCCTCATGGACTTCGACAGCTGCCCCTCTGAACAGCTGTCTCCTC
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1836510 68 -   2461138 ccttggtaagtatgcacatggaa--ccca-catggacatcgagagctgcccctctgaacagctgtctcctc
i cerAty1.NW_012001440v1          C 0 C 0
s manLeu1.NW_012105087v1             522389 68 -   1325925 ccttggtaagtatgcacatggaa--ccca-catggacatcgagagctgcccctctgaacagctgtctcctc
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3757501 69 -   3775709 CCTTGATAAGTATGCACATggac--cccctcatggacttcgacagctgcccctctgaacagctgtctcctc
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE935255v1                  47474 69 -    134735 --ctgcaacagattcatgggggattccccacatgggtttctgggtccctctctctgcataactccctcctc
i tarSyr2.KE935255v1              C 0 C 0
e panPan2.chr1                    208160613 1049 - 229774977 M
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=337011.000000
s hg38.chr1_KI270711v1_random         38428 90 +     42210 actggtgccctgccctgcagattgcagttgcttcagccgtcttgaactctgatctctgccttctcagctcagt-gagctgccctgccctga
s panTro5.chr1                    208026809 90 - 228573443 attggtgccctgccctgcagattgcagttgcttcaatggtcttgaactctgatctctgccttctcagctcagT-GGGCTGCCCTGCCCTGA
i panTro5.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3831061 89 -   8455952 ATT-GTGCCCTGCCCTGCAGATTGCAGTTGCTTCAATGGTCTTGAACTATGATCTCTGCCTTCTCAGCTCAGT-GGGCTGCCCTGCCCTGA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287448 91 +    297174 attggtgccctgccctgcagattgcaatttcttcagtggccttgaactctgatctctgccttctcagctcagtggggatgccctgctctga
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103772792 91 - 225584828 actggtgcccagccctgcagattgcaatttcttcagtggccttgaactctgatctctgccttctcagctcagtggggctgccctgctctga
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211916316 91 + 227556264 ATTGCTGCCCTGCCCCACAGACTGCAGTTGCTTCAGTGGACTTCAACTCTGATCTCTGCCTTCTCACCTCAGTGGGGCTGTCCTGCTCTGA
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1836578 91 -   2461138 actggtgccctgccctgcagattgtaatttcttcagtggccttgaactctgatctctgccttctcagctcagtggggctgtcctgctctga
i cerAty1.NW_012001440v1          C 0 C 0
s manLeu1.NW_012105087v1             522457 91 -   1325925 actggtgccctgccctgcagattgtaatttcttcagtggccttgaactctgatctctgccttctcagctcagtggggctgccctgctctga
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197972811 91 - 215897965 ATTGCTGCCCTGCCCCACAGACTGCAGTTGCTTCAGTGGActggaactctgatctctgccttctcacctcagtggggctgtcctgctctga
i nasLar1.chr1                    N 0 C 0
s colAng1.NW_012114988v1            3757570 91 -   3775709 attgctgccctgccccacagactgcagttgcttcagtggacttgaactctgatctctgccttctcacctcagtggggctgtcctgctctga
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE935255v1                  47543 89 -    134735 --tgctgtgtctcaccacagactctagctgcttcagctgccccaaactatgatggttgcctcctcagttcacataaatcacaattatctgc
i tarSyr2.KE935255v1              C 0 C 0
e panPan2.chr1                    208160613 1049 - 229774977 M
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287  0 -  14060431 C

a score=909944.000000
s hg38.chr1_KI270711v1_random         38518 203 +     42210 gtggactctagctcact-----atgcagctgctg-agaaattct--ccc----caaacaact-aggaaatcatgggg-cttcccccttaagttttc-------------------TCTTGGACTGCCTGTTGTACACTG-CT-GAAAA--------------------CAATTTTACGTTTGTTTATGGAGGCAGGGTTAGTCTGATATGATTTATTCTAACA--GACAGAAGCAGAAATCTGTTATACT-CTTTTAATTA
s panTro5.chr1                    208026899 203 - 228573443 GTGGACTCTAGCTCACT-----ATGCAGCTGCTG-AGAAATTCT--CCC----CAAAGAACT-AGGAAATCATGGGG-CTTCCCCCTTAAGTTTTC-------------------TGTTGTACTGCCTGTCGTACACTG-CT-GAAAA--------------------CAATTTTACGGTTGTTTATGGAGGCAGGGTTAGTCTGATATGATTTATTCTAACA--GACAGAAGCAGAAATCTGTTATACT-CTTTTAATTA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208161662 210 - 229774977 GTGGACTCTAGCCCACT-----ATGCAGCTGCTGAAGAAATTCCTACCC----CAAAGAACTAAGGAAATCATGGGGCCTTCCCCCTTAAGTTTTCT------------------TCTTGGACTGCCTGTCGTACACTG-CTAGAAAA--------------------CAATTTTACGGTTGTTTATGGAGGCAGGGTTAGTCTGATATGATTTATTCTAACA--GACAGAAGCAGAAATCTGTTATACT-CTTTTAATTA
i panPan2.chr1                    M 1049 C 0
s gorGor5.CYUI01015145v1            3831150 203 -   8455952 GTGGACTCTAGCCCACT-----ATGCAGCTGCTG-AGAAATTCT--CCC----CAAAGAACT-AGGAAATCATGGGG-CTTCCCCTTTAAGTTTTC-------------------TGTTGGACTGCCTGTTGTACACTG-CT-GAAAA--------------------CAATTTTACGTTTGTTTATGGAGGCAGGGTTAGTCTGATATGATTTATTCTAACA--GACAGAAGCAGAAATCTGTTACACT-CTTTTAACTA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287539 208 +    297174 caggactctagcccact-----gtgcagctgctg-agaaattct--ccccagacaaaaaact-aggaaatcatgggg-cttcccccttaagtttcc-------------------TGTTGTACTCCCTGTTGTCCACTGTCT-GAAAA--------------------CAATTTTATGTTTGTTTATGAAGGCAGGATTAGTCTGATATGATTTATTCTAACA--GATAGCAGTAGAAATCTGTTATAGT-CTTTTAATTA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103772883 204 - 225584828 gtggactctagcccact-----atgcagctgctg-agaaattct--ccc----caaacagct-aggaaatcatgggg-cttcccccttaagtttcc-------------------TGTTGTACTATCTGTTGTCCACTGTCT-GAAAA--------------------TAATTTTATGGTTGTTTATGGAGGCAGGATTAGTCTGATATGATTTATTCTAACA--GACAGAAGCAGAAATCTGTTATACT-CTTTTAATTA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211916407 203 + 227556264 GTGGACTCCAGCCCACG-----ATGCAGCTGCTG-AAAAATTCT--CCC----TAAAGAACT-AGGAAATCAT-GCC-CCCCCCCCTTTAGTTTCC-------------------TGTTGTACTGCCTGTTGTCCACTGTCT-GAAAA--------------------CAATTTTATGCTTGTTTATGGAGGCAGGATTAGTCTGATATGATTTATTCTAGGG--GAAACAACCAGAAATCTGTTATACT-CTTTTAATTA
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1836669 204 -   2461138 gtggactctagcccact-----atgcagctgctg-agaaattct--ccc----caaacagct-aggaaatcatgggg-cttcccccttaagtttcc-------------------TGTTGTACTATCTGTTGTCCACTGTCT-GAAAA--------------------TAATTTTATGGTTGTTTATGGAGGCAGGATTAGTCTGATATGATTTATTCTAACA--GACAGAAGCAGAAATCTGTTATACT-CTTTTAATTA
i cerAty1.NW_012001440v1          C 0 C 0
s manLeu1.NW_012105087v1             522548 204 -   1325925 gtggactctagcccact-----atgcagctgctg-agaaattct--ccc----caaacagct-aggaaatcatgggg-cttcccccttaagtttcc-------------------TGTTGTACTATCTGTTGTCCACTGTCT-GAAAA--------------------TAATTTTATGGTTGTTTATGGAGGCAGGATTAGTCTGATATGATTTATTCCAGCA--GAAACAAGCAGAAATCTGTTATACT-CTTTTAATTA
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197972902 204 - 215897965 gtggactccagcccacg-----atgcagctgctg-aaaaattct--ccc----taaagaact-aggaaatcatgggg-cttcccccttaagtttcc-------------------TGTTGTACTGCCTGTTGTCCACTGTCT-GAAAA--------------------CAATTTTATGGTTGTTTATGGAGGCAGGATTAGTCTGATATGATTTATTCTAACA--GGAACAAGCAGAAATCTGTTATACT-CTTTTAATTA
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3757661 199 -   3775709 gtggactccagcccacg-----ttgtagctgctg-aaaaattct--ccc----TAAAGAACT-AGGAAATCATGGGG-CTTCCCCCTTAAGTTTCC-------------------TGTTGTACTGCCTGTTGTCCA----CT-GAACA--------------------CAATTTTACGGTTGTTTATGGAGGCAAGATAAGTCTCATATGATTTATTCTAACA--GAAACAAGGAGAAATCTGTTATACT--TTTTAATTA
i colAng1.NW_012114988v1          C 0 C 0
s tarSyr2.KE935255v1                  47632 248 -    134735 ttggattccagctctctgctgggttcagtt-----agaaaatct--ccctagacagagatct-gggcaatcatgaag-cttaccttgtaagttttccttctcttggggattactgtcttgtgctgcctgttgttcactgcat-aaaaacagctccttaatattttgtccagttttatagttgtttatggagggaggattactc---taccagttactccaccatggttggaaatggaagtTCAGTGTAGTGCTATTAAATA
i tarSyr2.KE935255v1              C 0 N 0
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=1557981.000000
s hg38.chr1_KI270711v1_random         38721 354 +     42210 CTGTGTCTTTATAATATtatggtagacagaatcctaagatgacccccagtgatctttgctcttatataatcacttcctcctgagtgtagacaaa-gctactgaggagatgtcactcctgtgattgtgctacaatttatggcaaaaacaagttaacagatgtaatcgagatcccaaatcggtcaaatttaagatagacagattatctgatgagcttgacctagtgaacgtgagttccttggagggactgaggacttcctggagagatgtgaagtgc---aggagggtttccatgcagggcgatcctcctctgctggctggaggaagcatgcagtgggaacatgggaggcctctacgagc
s panTro5.chr1                    208027102 354 - 228573443 CTGTGTCTTTATAATATtatggtagacagaatcctaagatgacccccagtgatctttgctcttatataatcacttcttcctgagtgtagacaaa-gccactgaggagatgtcactcctgcgattgtgttacaatttatggcaaaaacaagttaacagatgtaatcgagatcccaaatcggtcaattttaagatagacagattatctgatgagcttgacctagtgaaggtgagttccttggagggaccgaggacttcctggagagatgtgaagtgc---aggagggtttccatgcagggcgagcctcctctgctggctggaggaagcatgcagtgggaacatgggaggcctctaggagc
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208161872 354 - 229774977 CTGTGTCTTTATAATATtatggtagacagaatcctaagatgacccccagtgatctttgctcttatataatcacttcttcctgagtgtagacaaa-gccactgaggagatgtcactcctgcgattgtgttacaatttatggcaaaaacaagttaacagatgtaatcgagatcccaaatcggtcaaatttaagatagacagattatctgatgagcttgacctagtgaaggtgagttccttggagggaccgaggacttcctggagagatgtgaagtgc---aggagggtttccatgcagggcgatcctcctctgctggctggaggaagcatgcagtgggaacatgggaggcctctaggagc
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3831353 354 -   8455952 CTGTGTCTTTATAATATtatggtagacagaatcctaagatgaccctcagtgatctttgctcttatataatcacttcttcctgagtgtagacaaa-gccactgaggagatgtcactcctgcgattgtgttacaatttatggcaaaaacaagttaacagatgtaatcgagatcccaaatcggtcaaatttaagatagacagattatctgatgagcttgacctagtgaaggtgagttccttggagggacagaggacttcctggagagatgtgaagtgc---aggagggttttcatgcagggccatcctcctctgctggctggaggaagcatgcagtgggaacatgggaggcctctaggagc
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287747 353 +    297174 CTGTGTCTTTATAGTATtatggtagacagaatcctaagatgagctgcagtgatctttgctcttatataatcacttcttcctgagtgcagacaaa-gccagcgatgaggtatcactcttgtgattgtgttacaatttatggcaaaaacaag-tagcagatgtaattgagatcccaaatcagtcgaatctaagatagagagattatcttatgagcttgaccaaatgaaggtgagttccttggagggactgaggtcttcctggagagatgtgaagtgc---aggagggtttccatgcaggatgattctcctctgctggatggagaaagcatgcagtgggaacatgggaggcctctaggagc
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103773087 354 - 225584828 CTGTGTCTTTATAATATTATGGTAGACAGAATCCTAGGATGACCCCCAGTGATCTTTGCTcttatataatcacttcttcctgagtgtagacaaa-gccagagatgagatatcactcctgtgactgggttacaatttatggcaaaaacaagttagcagatgtaatcaggattgcaaatcagtcaaatctaagatagagagattattttatgagcttgacctaatgaaggtgggttccttggagggactggggtcttcctggagagatgtgaagtgc---aggagggtttccatgcagggccattctcctctgctggctggagaaagcatgcagtgggaacatgggaggcctctaggagg
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211916610 346 + 227556264 CTGTGTCTTTATAATATTATGGT----CAaatcctaagatgacccccagtgatctttgttctcatataatcacttcttcctgactgtagacaaaggcca-----gtgacatcactcctgtgattgtgttacaatttaatgcaaaaacaagttagcagatataatcgagatcacagatcagtcaaatttaatatagagagatgatcttatgagcttgacctaatgaaggtgagttccttggagggactgaggtcttcctggagagatgtgaagtgc---aggagggtttccattcagggcatgtctcctcttctggctggaggaagcatgtattgggaacatgggaggcctccaggagc
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1836873 350 -   2461138 CTATGTCTTTATAATATtatggtagacagaatcctaggatgacccccagtgatctttgctcttatataatcacttcttcctgagtgtagacaaa-gccagtgatgagatatcactcccgtgactgggttacaatttatggcaaaaacaagttagcagatgtaatcaggattgcaaatcagtcaaatcta----agagagattatcttatgagcttgacctaatgaaggtgggttccttggagggactggggtcttcctggagagatgtgaagtgc---aggagggtttccatgcagggcgattctcctctgctggctggagaaagcatgcagtgggaacatgggaggcctctaggagg
i cerAty1.NW_012001440v1          C 0 C 0
s manLeu1.NW_012105087v1             522752 357 -   1325925 CTGTGTCTTTATAATATtatggtagacagaatcctaggatgacccccagtgatctttgttctcatataatcacttcttcctgagtgtagacaaa-gccagagatgagatctcactcctgtgactgggttacaatttatggcaaaaacaagttagcagatgtaatcaggattgcaaatcagtcaaatctaagatagagagattatcttatgagcttgacctaatgaaggtgagttccttggagggactgaggtcttcctggagagatgtgaagtgcaggaggagggtttccatgcagggcgattctcctctgctggctggagaaagcatgcagtgggaacatgggaggcctctaggagg
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197973106 351 - 215897965 CTGTGTCTTTATAATATTATggt----agaatcctaagatgacccccagtgatctttgttctcatataatcacttcttcctgagtgtagacaaaagccagtgatgagatatcactcctgggattgtgttacaatttatggcaaaaacaagttagcagatgtaatcaagatctcagatcagtcaaacttaatacagagagatgatcttatgagcttgacctaacgaaggtgagttccttggagggactgaggtcttcccagagagatgtgaagtgc---aggagggtttccatgcagggcgattctcctcttctggctggaggaagcatgtattgggaacatgggaggcctccaggagc
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3757860 351 -   3775709 CTGTGTCTTTATAATATTATggt----agaatcctaagatgacccccagtgatctttgttctcatataatcaattcttcctgagtgtagacaaaagtcagtgatgagatatgactcctgtgattctgttacaatttatggcaaaaacaagttagcagatgtaatcgagatctcagatcagtcaaatttaatatagagagatgatcttaagagcttgaccaaatgaaggtgagttccttgcggggactgaggtcttcctggagagatgtgaagtgc---aggagggtttccatgcagggcgattctcctcttctggctggaggaagcatgtattaggaacatgggaggcctccaggagc
i colAng1.NW_012114988v1          C 0 C 0
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=631219.000000
s hg38.chr1_KI270711v1_random         39075 118 +     42210 agcgagaggcccctggctgacagccagcaagaaaacagagatctcagtcctacagtcacaaggaactgaactcagctgacaacctgaggaaacttgagaggaagttcttcccc---agaac
s panTro5.chr1                    208027456 118 - 228573443 agcgagaggcccctggctgacagccagcaagaaaacagagatctcagtcctacggtcacaaggaactgaactcagctgacaacctgaggaaacttgagaggaagttcttcccc---agaac
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208162226 121 - 229774977 agcgagaggcccctggctgacagccagcaagaaaacagagatctcagtcctacagtcacaaggaactgaactcagctgacaacctgaggaaacttgagaggaagttcttcccccagaaacc
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3831707 116 -   8455952 agc--gaggcccctggctgacagccagcaagaaaacagagatctcagtcctacagtcacaaggaactgaactcagctgacaacctgaggaaacttgagaggaagttcttcccc---agaac
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    288100 118 +    297174 agcgagaggcccccagctgacagccagcaagaaaacagagatctcagtcctgcagtcacaaggaactgaactcagctgacaacctgaggaaatttgaaaggaagttcttcccc---agaac
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103773441 115 - 225584828 agtgagaagcccctggctgacagccagcaagaaaacagagatctcagtcctacagtcacaaggaactgaattcagctgaca---tgaggaaacttgagaggaagttcttcccc---agaac
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211916956 118 + 227556264 agcgagaggcccctggctgacagtcagcaagaaaatagagatctcagttctacagtcacaaggaactgaactcagctgacaacctgaggaaactagacagcaaattcttcccc---agaaa
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1837223 115 -   2461138 agcgagaaggccctggctgacagccagcaagaaaacagagatctcagtcctacagtcacaaggaactgaattcagctgaca---tgaggaaacttgagaggaagttcttcccc---agaac
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1039569 115 -   1280666 agcgagaagcccctggctgacagccagcaagaaaacagagatctcagtcctatagtcacaaggaactgaattcagctgaca---tgaagaaacttgagaggaagttcttcccg---agaac
i chlSab2.chr20_KE148050v1_random I 6493 C 0
s manLeu1.NW_012105087v1             523109 115 -   1325925 agtgagaagcccctggctgacagccagcaagaaaacagagatctcagtcctacagtcacaaggaactgaattcagctgaca---tgaggaaacttgagaggaagttcttcccc---agaac
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197973457 118 - 215897965 agcgagaggcccctggctgagagtcagcaagaaaacagagatctcagttctacagtcacaaggaactgaactcagctgacaacctgaggaaactagagagcaagttcttcccc---agaaa
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3758211 116 -   3775709 agcgagaggcccctggctgacagtcagcaagaaaacagagatctcagttctacagtcataaggaactgaa--caactgacaacctgaggaaactagagagcaagttcttctcc---agaaa
i colAng1.NW_012114988v1          C 0 C 0
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=754493.000000
s hg38.chr1_KI270711v1_random         39193 150 +     42210 ctccagaaagaaacccagcctaatttcagcctgtgaggccct-gagaagaagacccagagaatccaggcctgaacttctgatctgtggacactgcaagaaaataaatcattcttattttatgccgct-aatgcttgcagtaatttagtatgc
s panTro5.chr1                    208027574 150 - 228573443 ctccagaaagaaacccagcctaatttcagcctgtgaggccct-gagaagaagacccagcgaatccaggcctgaacttctgatctgtggacactgcaagaaaataaatcattcttattttacgccgct-aatgctttcagtaatttagtatgc
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208162347 149 - 229774977 tcccagaaagaaacccagcctaatttcagcctgtgaggccctagagaagatgacccagcgaatccaggcctgaacttctgatctgtggacactgcaag-aaataaatcattc-tattttacgccgct-aatgcttgcagtaatttagtatgc
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3831823 150 -   8455952 ctccagaaagaaacccagcctaatttcagcctgtgaggccct-gagaagaagacccagcaaatccaagcctgaacttctgatctgtggacactgcaagaaaataaatcgttcttattttacgccgct-aatgcttgcagtaatttagtatgc
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    288218 150 +    297174 ttccagaaagaaacctagcctaatttcagcctgtgaggccct-gagaagaagacccaggtaatccaggcctgaacttctgatctgtggacactgcaagaaagtaaatcattgttattttaagcctct-aaagcttgcagtaatttagtatgc
i nomLeu3.chr24_GL397604_1_random C 0 I 1421
s rheMac8.chr1                    103773556 147 - 225584828 ccccagaaagaaacccagtctaatttcggcctgtgaggccct-g---agaagacccagctaatccaggcctgaacttctgatctgtggacactgcaagaaagtaaactgctgttattttaagcctct-aaagcttgcagtaatttagtatgc
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211917074 151 + 227556264 ctccagaaagaaacccagcctaatttcagcctgtgaggccct-gagaagaagacccagctaatccaggcctcaacttctcatctgtggatactgccagaaaataaatcagtcttattttaagcctctaaaagctagcagtaatttagcatgc
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1837338 147 -   2461138 ccctagaaagaaacccagtctaatttcggcctgtgaggccct-g---agaagacccagctaatccaggcctgaacttctgatctgtggacactgcaagaaagtaaactgctgttattttaagcctct-aaagcttgcagtaatttagtatgc
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1039684 147 -   1280666 ccccagaaagaaatccagtctaatttcagcctgtgaggccct-g---agaagacccagctaacccaggcctgaacttctgatctgtagacactgcaagaaagtaaactgctgttattttaaggctct-aaagcttgcagtaatttagtatgc
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             523224 147 -   1325925 tcccagaaagaaacccagtctaatttcggcctgtgaggccct-g---agaagacccagctaatccaggcctgaacttctgatctgtggacactgcaagaaagtaaactgctgttattttaagcctct-aaagcttgcagtaatttagtatgc
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chrUn_JMHX01196331v1            2 151 +       305 CTCCAGAAAGAAACCcagcctaatttcagcctgtgaggccct-gagaagaagacccagctaatccaggcctcaacttctcatctgtggatactgcaagaaaataaatcattcttattttaagcctctaaaagttaccagtaatttagcatgc
i nasLar1.chrUn_JMHX01196331v1    n 0 C 0
s colAng1.NW_012114988v1            3758327 151 -   3775709 ctccagaaagaaactcagcctaatttcagcctgtgaggccct-gagaagaagacccagctaatccaggcctcaacttctcatctgtggatactgcaagaaaataaatcagtcttactttaagcctctaaaagttaccagtaatttagcatgc
i colAng1.NW_012114988v1          C 0 C 0
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=791442.000000
s hg38.chr1_KI270711v1_random         39343 151 +     42210 agcaatagaaaattaatacaAATAAAATGGAGAAGGCTTTGGAGTGGGGACAAGAAGGAAACGGTGGGAGAGGGATGCCTGTATGCTGATATGGTTGATGCCTGTATGGTTGAATTGGGTCTACCGTTCCTCATCTAATTAGCTATGGTCT
s panTro5.chr1                    208027724 148 - 228573443 agcaatagaaaattaatacaAATAAAATG---AAGGCTTTGGAGTGGGGACAAGAAGGAAAGGGTGGGAGAGGGATGCCTGTATGCTGATATGGTTGACGCCTGTATGGTTGAATTGGGTCTACCATTCCTCATCTAATTAGCTATGGTCT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208162496 147 - 229774977 agcaatagaaaattaatac-aATAAAATG---AAGGCTTTGGAGTGGGGACAAGAAGGAAAGGGTGGGAGAGGGATGCCTGTATGCTGATATGGTTGATGCCTGTATGGTTGAATTGGGTCTACCATTCCTCATCTAATTAGCTATGGTCT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3831973 148 -   8455952 agcaatagaaaattaatacaAATAAAATG---GAGGCTTTGGAGTGGGAACAAGAAGGAAACGGTGGGAGAGGGATGCCTGTATGCTGATATGGTTGATGCCTGCATGGTTGAATTGGGTCTACCATTCCTCATCTAATTAGCTATGGTCT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    289789 151 +    297174 aGCAATAGAAAATTAATACAAGTAAAATGGAGAAGACTTTGGAGTGGGGACAAGAATGAAATGGTGGGAGAGGGATGCCTGTATGCTGATATGGTTGATGACTGTATGGTTGAATTGGGTCTACCATTCCTCATCTAATTAGCTATGGTCT
i nomLeu3.chr24_GL397604_1_random I 1421 C 0
s rheMac8.chr1                    103773703 151 - 225584828 agcagtagaaaattaatacaAATAAAATGGAGAAGACTTTGGAGTGGGGACAAGAATGAAACGGTGGGAGAGGGATGCCTGTATGCTGATATGGTTGATGCCTGTAAGGCTGAATTGGGTCTATCATTCCTCAGCTAATTAGCTATGGTCT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211917225 151 + 227556264 agcaatagaaaattaatacaAACAAAATGGAGAAGACGTTGGAGTGGGGACAAAAATGAAACGGTGGGAGAGGGATGCCTGTATGCTGATATGGTTGATGCCTGTACGGTTGAATTGGGTCTACCATTCCTCATCTAATTAGCTTTGGTCT
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1837485 151 -   2461138 agcagtagaaaattaatacaAATAAAATGGAGAAGACTTTGGAGTGGGGACAAGAATGAAACGGTGGGAGAGGGATGCCTGTATGCTGATATGGTTGATGCCTGTAAGGCTGAATTGGGTCTACCATTCCTCAGCTAATTAGCTATGGTCT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1039831 150 -   1280666 agcaatagaaaattaatacaAATAAAATGGAGAAGACTTTGGAGTGGGGACAAGAATGAAAC-GCGGGAGAGGGATGCCTGTATGTTGATACGGTTGATGCCTGTATGGCTGAATTGGGTCTACCATTCCTCATCTCATTAGCTATGGTCT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             523371 128 -   1325925 agcagtagaaaattaatacaAATAAAATGGAGAAGACTTTGGAGTGGGGACAAGAATGAAACGGTGGGAGAGG-----------------------GATGCCTGTAAGGCTGAATTGGGTCTACCATTCCTCAGCTAATTAGCTATGGTCT
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chrUn_JMHX01196331v1          153 151 +       305 agcaatagaaaattaatacaAACAAAATGGAGAAGACGTTGGAGTGGGGACCAAAATGAAACGGTGGGAGAGGGATGCCTGTATGCTGATATGGTTGATGCCTGTACGGTTGAATTGGGTCTACCATTCCTCATCTAATTAGCTTTGGTCT
i nasLar1.chrUn_JMHX01196331v1    C 0 n 0
s colAng1.NW_012114988v1            3758478 151 -   3775709 agcaatggaaaattaatacaAACAAAATGGAGAAGACGCTGGAGTGGGGACAAAAATGAAACGGTGGGAGAGGGACGCCTGTATGCTGATACGGTTGATGCCTGTACGGTTGAATTGGGTCTACCATTCCTCATATAATTAGCTTTGGTCT
i colAng1.NW_012114988v1          C 0 C 0
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=4644631.000000
s hg38.chr1_KI270711v1_random         39494 1047 +     42210 ATTAAGGTGCATAGCTACACACAAAT-ATTGGTACTACGTTCAATTCAGAGGAATAAGATATTGCATTCTTGACAGTAGACAAGAACACCCTGAATTTGGGGTCACTGTATCATAAGTCATGTTATCAGGTCCCTCTAGGAAGGCTTAGAGGAAGATTTCCAGGATACACTTGTGACAACATTGAAGGCTTCTTTCTTCCCCAAAGGGACCCGATCTCCCCTCAGTCGAGAAGCTCCAAGTCTCTGAACTGGATGCCAGGTTATAAATTCCCCCTATACTGACTCCATCAGGCTTCTGTCCTCAGAACTA--GAGTTTATCAGTAAAAGATAGACTCATGGGAGTCTAGGCATTTATTCTCTTATTTTATATAAATCAGTTAATGTGCAGGAACAAAACAGACTTTGAAGAAAGACACTCACAGTTGCCACAGGAAAACACCTTCAACATCCTCATGAGTCATCATGGGTGTTCTGTTGGGAGGACTTGATAGGAGGCTTTCCTCCTCACGGGCTAGTGCAGATCCAGGGGAAATGTCATCAAGTCCTCCattcggagggtagcagctgaggctgctgattcgttaggcctcctgcagctggagatgcaagtagtgcattttcatggccaccgcaGG-GCCCTCAGTTTAGCATTCTtcagagccagcatccaacaagccacagaagctctgagtatttccctttcctcagtcacccacataaatggcttcagagccttctggggaaggcctgaaggaagatttacagcatacacttgtggtagcattgaaggcttcactcttcctcaagggatccaatctcccctcagtcaagaagctccaggtatctgaactggatgccaggtcataaattcccactatggtgactccatcaggtctctgtcctcagaactagagattttctaagtgtaacgtaagttgatttcttagtagatgtcccatccattacattcccagacacctcacaatgattcgaatgattagtaaccaccacatatccctgcCTCTCAGGGAAATCCCTcccgccttgt
s panTro5.chr1                    208027872 1049 - 228573443 ATTACGGTGCATAGCTACACACAAAT-ATTGGTACTACGTTCAATTCAGAGGAACAAGATATTGCATTCTTGAGAGTAGACAAGAACACCCTGAATTTGGGGTCACTGTATCATAAGTCATGTTATCAGGTCTCTCTAGGAAGGCTTAGAGGAAGATTTCCAGGATACACTTGTGACAACATTGAAGGCTTCTTTCTTCCCCAAAGGGACCCGATCTCCCCTCAGTCAAGAAGCTCCAAGTCTCTGAACTGGATGCCAGGTTATAAATTCCCCCTATACTGACTCCATCAGGCTTCTGTCCTCAGAACTATTGAGTTTATCAGTAAAAGATAGACTCATGGGAGTCTAGGCATTTATTCTCTTATTTGACATAAATCAGTTAATGTGCAGGAACAAAACAGACTTTGAAGAAAGAAAGTCACAGTTGCCACAGGAAAACACCTTCAACATCCTCATGAGTCATCATGGGTGTTCTGCTGGGAGGACTTGATAGGAGGCTTTCCTCCTCATGGGCTAGTGCAGATCCAGGGGAAATGTCATCAAGTCCTCCattcggagggtagcagctggggctgctgattcgttaggcctcctgcagctggagatgcaagtagtgcagtttcatggccaccacaGGTGCCCTTAGTTTAGCATTCTtcagagccagaatccaacaagccacagaagctctgagtatttccctttcctcagtcacccacataaatggcttcagggccttctggggaaggcctggaggaagatttacagcatacactggtggcagcattgaaggcttcactcttcctcaagggatccaatcttccctcactcaagaagctccaggtatctgaactggatgccaggtcataaattcccactatggtgactcgatcgggtctctgtcctcagaactagagcttttctaattattac-taagttgatttcttagtagatttcccatccattacattcccaaacacctcacaatgattcgaatgattagtaaccaccacatatccctgcCTCTCAAGGAAATCCCTcccgccttat
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208162643 1049 - 229774977 ATTACGGTGCATAGCTACACACAAAT-ATTGGTACTACGTTCAGTTCAGAGGAAGAAGATATTGCATTCTTGAGAGTAGACAAGAACACCCTGAATTTGGGGTCACTGTATCATAAGTCATGTTATCaggtctctctaggaaggcttagaggaagatttccaggatacacttgtgacaacattgaaggcttctttcttccccaaagggacccgatctcccctcagtcaagaagctccaagtctctgaactggATGCCAGGTTATAAATTCCCCCTATACTGACTCCATCAGGCTTCTGTCCTCAGAACTATTGAGTTTATCAGTAAAAGATAGACTCATGGGAGTCTAGGCATTTATTCTCTTATTTGACATAAATCAGTTAATGTGCAGGAACAAAACAGACTTTGAAGAAAGAAAGTCACAGTTGCCACAGGAAAACACCTTCAACATCCTCATGAGTCATCATGGGTGTTCTGCTGGGAGGACTTGATAGGAGGCTTTCCTCCTCATGGGCTAGTGCAGATCCAGGGGAAATGTCATCAAGTCCTCCattcggagggtagcagctggggctgctgattcgttaggcctcctgcagctggagatgcaagtagtgcagtttcatggccaccacaGGTGCCCTTAGTTTAGCATTCTtcagagccagaatccaacaagccacagaagctctgagtatttccctttcctcagtcacccacataaatggcttcagggccttctggggaaggcctggaggaagatttacagcatacacttgtggcagcattgaaggcttcactcttcctcaagggatccaatcttccctcagtcaagaagctccaggtatctgaactggatgccaggtcataaattcccactatggtgactccatcaggtctctgtcctcagaactagagcttttctaagtgtaac-taagttgatttcttagtagatttcccacccattacattcccagacacctcacaatcattcgaatgattagtaaccaccacatatccctgcctctcaaggaaatccctcccgccttat
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3832121 1048 -   8455952 ATTAAGGTGCATAGCTACACACAAAT-ATTGGTACTACGTTCAATTCAGAGGAAGAAGATATTGCATTCTTGAGAGTAGACAAGAACACCCTGAATTTGGGGTCACTGTATCATAAGTCATATCATcaggtccctctaggaaggcttagaggaagatttccaggatacacttgtgacaacattgaaggcttctttcttccccaaagggacctgatctcccctcagtcaagaagctccaagtctctgaactggATGCCAGGTTATAAATTCCCCCTATACCGACTCCATCAGGCTTCCGTCCTCAGAACTA-TGAGTTTATCAGTAAAAGACAGACTCATGGGAGTCTAGGCATTTATTCTCTTATTTGATATAAATCAGTTAATGTGCAGGAACAAAACAGACTTTGAAGAAAGAAAGTCACAGTTGACACAGGAAAACACCTTCAACATCCTCATGAGTCATCATGGGTGTTCTGTTGGGAGGACTTGATAGGAGGCTTTCCTCCTCATGGGCTAGTACAGATTCAGGGGAAATGTCATCAAGTCCTCCATTAGCagtgtagcagctggggctgttgattcgttaggccccctgcagctggagatgcaagtagtgcattttcatggccaccacaGG-GCCCTTAGTTTAGCATTCTtcagagccagaatccaacaagccacagaagctctgaatatttccctttcctcagtcaaccacataaatggcttcagggccttctggggaaggcctggaggaagatttacagcatacactggtggcagcattgaaggcttcactcttcctcaagggatccaatcttccctcactcaagaagctccaggtatctgaaccagatgccaggtcataaattcccactatggtgactccatcgggtctctgtcctcagaactagagctttttgaagtataacataagttgatttcttagtagatttcccatccattacattcccagacacctcacaatgattcgaatgattagtaaccaccacatatccctgcCTCTCAAGGAAATCCCTcccgccttgt
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    289940 1022 +    297174 ATTAAGGTGCATAGCTGTACACAAAT-ATTGGTACTAAGTG-AATCCCGAGTAATAAGATATTGCATCCTTGAAAGTAGATGAGAACACCCTGAATTGGTGGTCACCGTATCATATGTCATAT-ATcaggtccctctgggaaggc-cagaggaagatttacaggatacatttgtgacaacattgaaggcttctttcttccccaaagggacccaatctccccccagtcaagaagctccaagtctctgaactggatgccaggttataaattcccactatactgactccatcaagcttctgtcctcagaacta--gagtttatcAGTAAAAGATAGACTCATGGGAGTGTAGGCATTTATTCTCTTATTTTATATAAATCAGCTAATGTGCATGAACAAAACAGACTTTGAGGAAAGAAAGTCACAGTTGCCACAGGAAAACAGCTTCGACATCCTCATGAGTCATCATGGGTGTTCCATTGGGAGGACTTGATATGAGGCTTTCCTCCtcatgggctagtacagatctgggggaaatgtcatcaagtactcgattcagagtctagcagctggggctgttgattcatcaggcctcctgcagctggagatgcaagtagtgcattttcatggccgccacaGGTGCCCTTAGGCTAGCATTCTtcagagccagaatccaaaaagccacagaagctccgagtatttccctttcctcggtcacccacataaatggcttcaggtccttctggggaaggcctgaaggaagatttacagcatacacttgtggcagcattgaaggcttcactcttcctcaagggatccaatctcccctccgtcaagaagctccaggtatctgaactggatgccaggtcataaattgccactat-------------ggtctctgtcctcagaactagagcttttctaattattacatacattgatttctt-gtagatttcccatccattacattcccagatacctcac---------gatgattagcaaccaccacaggtccctgcCTCTCAAGGAAATCCCTCCCACCTTCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103773854 1037 - 225584828 ATTAAGGTGCATAGCTATACACAAAT-ATTGGCACTAGGTTGAATCCAGAGGAATAAGATATTGCATTCTTGAGAGTAGATAAGAACACCCTGAATTTGGGGTCACCGTATCATCAGTCATAT-ATcaggtccctctgggaaggcctagaggaagatttacaggatacacttgtgacaacattaaaggcttctttcttcccgaaagggacccgatctcctctcagtcaagaagctccaggtctctgaactggaagccaggttataaattcccactctaccgactccatcaagcttctgtcctcagaacta--gagtttATTAGTAAAAGATAGACTCATGGGGGTCTAGGCATTTATTCTCTTATTTTATATAAATCACTGAATGTGCACAAACAAAACAGACTTTGAAGAAAGTAAGTCACAGTCACCACAGGAAAACAGCTTCGACATCCTCATGAGTCATCATGGGTGTTCTGTTGGGAGGACTTGATATGAGGGTTTCCTCCTCATGGGCTAGTACAGATCCGGGGGAAATGTCATCAAGTCCTCAattcagagtgtagcagctggggctgttgattcgttaggcctcctgcagctggagatgcaagtagtgcattttcatggcc-ccacaCGTGCCCTTAGGCTAGCATTCTtcagagccagcatccaacaagtcactgaagctctgggtatttccctttcctcagtcacccacataagtggcttcaggtccttctggggaaggcctggaggaagatttacagcatacacttgtggcagcattgaaggcttcactgttccccaagagatcccatctccccccagtcaagaagctccaggtgtctgaactggatgccaggtcataaattcccactatggtgactccatcaggtctctgtcctcagaacaagagcttttctaattattacataagttgatttcttagtagatttcccatccattacacacccagacacctcac---------aatgattagtaaccaccacatgtccctgcCTCTCAAGGAAATCCCTCCTGccttgt
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211917376 1037 + 227556264 ATTAAGCTGCATAGCTACACACAAAC-ATTGGTACTAGGTTGAATCCAGAGGAGTAAGATATTGCATTCTTCAGAGTAGATGAGAACACTCTGAATTTGGGGTCACTGGATCATAAGTCATAT-AGGaggtccctctgggaaggcctagaggaagatttacaggatacacttgaaacaacattgaaggcttctttgttccccagagggacccgatctcctctcagtcaagaagatccaagtctctgaactggatgccaagttataaattcccactatactgactccatcaagcttctgtcctcagaacta--gagtttatcAATAAAAGATGGACTCAAGGGAGTCTAGGCATTTATTCTCCTATTTTATACAAATCAGTTAATGTGTATGAACAAAACAGACTTTGAAGAAAGTAAATCACAGCTGCCACAGGAAAACAGCTTCAACATCCTCATCAGTCATCAGGGGTGTTCTGTTGAGAGGACTTGATATGAGGCTTTCCTCATCATGGGCTAGCACAGACGCAGGGGAAATGTCACCAAGTCTTCAattcggagtgtagcagcctgggctgttgattcgttaggcctcctgctgctggagatgcaagtagtgcattttcatggccaccacaGGTGCCCTTAGGTTAGCATTCTtcagagccagaatctaacaagccacagaagctctgagtatctccctttcctcagtcactcacataaatgacttcaggtccttcagggggaggcctgaaggaagattgacagcacacacttgcggcaacattgaaggcttcactcttcctcaagggat-ccatctcccctcagtcaagaagctccagggatctcaactggatgccaggtcataaattcccactatggtgactgcatcaggtctctgtcctcagaactacagcttttctaattattacaaaagttcatttcttactagatttcccatccattacattcccagacacctcac---------aatgattagtaaccaccacataaccctacctctcaaagaaatccctcccgccttgt
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1837636 1037 -   2461138 ATTAAGGTGCATAGCTATACACAAAT-ATTGGCACTAGGTTGAATCCAGAGGAATAAGATATTGCATTCTTGAGAGTAGATAAGAACACCCTGAATTTGGGGTCACCGTATCATCAGTCATAT-ATcaggtccctctgggaaggcctagaggaagatttacaggatacacttgtaacaacattaaaggcttctttcttcccgaaagggacccaatctcctctcaatcaagaagctccaggtctctgaactggaagccaggttataaattcccactatactgactccatcaagcttctgtcctcagaacta--gagtttATTAGTAAAAGATAGACTCATGGGGGTCTAGGCATTTATTCTCTTATTTTATATAAATCACTGAATGTGCACAAACAAAACAGACTTTGAAGAAAGTAAGTCACAGTCACCACAGGAAAACAGCTTCGACATCCTCATGAGTCATCATGGGTGTTCTGTTGGGAGGACTTGATATGAGGGTTTCCTCCTCATGGGCTAGTACAGATCCGGGGGAAATGTCATCAAGTCCTCAattcggagtgtagcagctggggctgttgattcgttaggcctcctgcagctggagatgcaagtagtgcattttcatggcc-ccacaTGTGCCCTTAGGCTAGCATTCTtcagagccagcatccaacaagccactgaagctctgggtatttccctttcctcagtcacccacataagtggcttcaggttcttctggggaaggcctggaggaagatttacagcatacacttgtggcagcattgaaggcttcactgttccccaagggatcccatctctccccagtcaagaagctccaggtatctgaactggatgccaggtcatgaattcccactatggtgactccatcaggtctctgtccccagaacaagagctcttctaattattacataagttgatttcttagtagatttcccatccattacacacccagacacctcac---------aatgattagtaaccaccacATGTCCCTGCCTCTCAAGGAAATCCCTCCTGccttgt
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1039981 1033 -   1280666 ATTAAGGTGCATAGCTATACACAAATAATTGGTACTAGGTTGAATCCAGAGGAATAAGATATTGCATTCTTGAGAGTAGATAAGAACACCCTGAATTTGGGGTCACTGTATCATCAGTCATAT-ATcaggtccctctggaaaggcctagaggaagatttacaggatacacttgtgaaaacattaaaggtttctttcttccccaaagggacccgatctcctctcagtcaagaagctccaggtctctgaactggaagccaggttataaattcccactatactgactccatcaagcttctgtcctcagaacta--gagtttATTAGTAAAAGATAGACTCATGGGGGTCTAGGCATTTATTCTC-----TTATATAAATCAGTGAATGTGCACAAACAAAACAGACTTTGAAGAAAGTAAGTCACAGTCACCACAGGAAAACAGCTTCGACATCCTCATGACTCATCATGGGTGTTCTGTTGGGAGGACTTGATATGAGGGTTTCCTCCTCATGGGCTAGTACAGATCCGGGGGAAATGTCATCAAGTCCTCAattcagagtgtagcagcctgggctgttgattcgttaggcctcctgcagctggagatgcaagtagtgcattttcatggcc-ccacaGGTGCCCTTAGGTTAGCATTCTtcggagccagaatccaacaagcgactgaagctctgggtatttccctttcctcagtcacccacataagtggcttcaggttcttctggggaaggtctggaggaagatttacagcatacacttgtggcagcattgaaggcttcactcttccccaagggatccaatctccccccagtcaagaagctccaggtatctgaactggatgccaggtcataaattcccaccatggtgactccaacaggtctctgtcctcagaactagagcttttctaattattacataagttgatttcttagtagatttcccatccattacactcccagacacctcac---------aatgattagttaccaccacatgtccctgcCTCTCAAGGAAATCCCTCCTGccttgt
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             523499 1037 -   1325925 ATTAAGGTGCATAGCTATACACAAAT-ATTGGCACTAGGTTGAATCCAGAGGAATAAGATATTGCATTCTTGAGAGTAGATAAGAACACCCTGAATTTGGGGTCACCGTATCATCAGTCATAT-ATcaggtccctctgggaaggtctagaggaagatttacaggatacacttgtgacaacattaaaggcttctttcttcccaaaagggacccgatgtcctctcagtcaagaagctccaggtttctgaactggaagccaggttataaattcccactatactgactccatcaagcttctgtcctcagaacta--gagtttATTAGTAAAAGATAGACTCATGGGGGTCTAGGCATTTATTCTCTTATTTTATATAAATCACTGAATGTGCACAAACAAAACAGACTTTGAAGAAAGTAAGTCACAGTCACCACAGGAAAACAGCTTCGACATCCTCATGAGTCATCATGGATGTTCTGTTGGGAGGACTTGATATGAGGGTTTCCTCCTCATGGGCTAGTACAGATCCGGGGGAAATGTCATCAAGTCCTCAattcagagtgtagcagctggggctgttgattcgttaggcctcctgcagctggagatgcaagtagtgaattttcatggcc-ccacaGGTGCCCTTAGGctagtattcttcagagccagaatccaacaagccactgaagctctgggtatttccttttcctcagtcacccacataagtggcttcaggtccttctggggaaggcctgaaggaagatttacagcatacacttgtggcagcattgaaggcttcactgttccccaagggatccaatctcccccaagtcaagaagctccaggtatctgaactggatgccaggtcataaattcccactatggtgactccatcaggtctctgtcctcagaactagagcttttctaattattacataagttgatttcttagtagatttcccattgattacactcccagacacctcac---------aatgattagtaaccaccacatgtccctgcCTCTCAAGGAAATCCCTCCTGccttgt
i manLeu1.NW_012105087v1          C 0 C 0
s colAng1.NW_012114988v1            3758629 1032 -   3775709 ATTAAGGTGCATAGCTACACACAAAT-ATTGGTACTGGGTTGAATCCAGGGGAGTAAGATATTGCATTCTTCAGAGTAGACCAGAACACTCTGAATTTGGGGTCACTCGATCATAAGTCATAT-AgcaggtccctctgggaagccctagaggaagatttacaggatacacttgaaacaacattgaaggcttctttgttccccagagggacccgatctcctctcagttaagaagctccaagtctctgaactggATGCCAACTTATAAATTTCCACTATACTGACTCCATCAAGCTTCTGTCCTCAGAAGTA--GAGTTTATCAATAAAAGATGGACTCATGGGAGTCTAGGCATTTATTCTCCTATTTTATATAAATCAGTTAATGTGCATGAACAAAACAGACTTTGAAGAAAGAAAGTCACAGTTGCCACAGGAAAACAGCTTCGACATCCTCATCAGTCATCAGGGGTGTTCTGTTGGGAGGACTTGATATGAGGCTTTCctcatcatgggctagtacagactcgggggaaatgtcaccaagtcctcaattcggagtgtagcaggcggcgctgttgattcgctatgcctcctgctgctggagatgcaagtagtgcattttcatggccaccacaGGTGCCCTTAGGTCAGCATTCTtcagagccagaatccaacaagccactgaagctctgagtatttccctttcctcagtcacccacataaatgacttcaggtccttcaaggggaggcctggaagaagatttacagcatacacttgcggcaccattgaaggcttcactcttcctcaggggat-ccatctcccctcagtcaagaagctccaggtagctcaactggatgtcaggtcataaattcccactatggtgactccatcaggtctctgtcctcagaactagagcttttctaattattacaaaagttcatttcttactagatttctcatccattacattcccagaca-ctcac---------aatgattagtaaccaccacatatc----cctctcaaggaaatccatcctgccttgt
i colAng1.NW_012114988v1          C 0 C 0
e nasLar1.chrUn_JMHX01196331v1          304    0 +       305 I
e macNem1.NW_012017688v1           11420287    0 -  14060431 C

a score=742544.000000
s hg38.chr1_KI270711v1_random         40541 148 +     42210 ctctagatggccaagtcccacggcctgtcctctactcttccagaaccctgttgttctcactgacagcagggagggcaaatccatgcagcagctcccgccatgacctccagcctgcagaggatgggcgccacaggacttttaaacgcat
s panTro5.chr1                    208028921 148 - 228573443 ctctagatggccaagtcccatggcctgtcctctactcttccagaaccctgttgttctcactgacagtggggaggtcaaatccatgcagcatctcccgccatgacctccagcatgcagaggatgggcgccacaggacctttacacgcat
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208163692 148 - 229774977 ctctagatggccaagtcccatggcctgtcctctactcttccagaaccctgttgttctcactgacagcagggagggcaaatccatgcagcagctcccgccatgacctccagcctgcagaggatgggcgccacaggacctttacacgcat
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3833169 148 -   8455952 ctctagatggccaagtcccatggcctgtcctctactcttccagaaccctgttgttctcactgacagtggggagggcaaatccatgcagcatctcccgccatgacctccagcctgcagaggatgggtgccacaggacctttacacacat
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    290962 148 +    297174 TTCTAGATGGCCAAGTCCCATGGCCTGTCCTCTACTCTTCCAGAACCCTATTTTTCTCACTGACAGCAGGGAGGGCAAATCCATGCATCGTCTCCCACCATGACCTCCAGCCTGCAAAGGAGAGGTGCCACAGGACCTTTACATGCAC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103774891 144 - 225584828 ctctagagggctgagtcccacagcctgtcctctactcttccagaaccctgttgtt----ctgacagcagggagggcaaatccatgtagcatctcccgccatgacctccggcctgcagaggagaggcgccacaggacctttacatgcac
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211918413 148 + 227556264 ctctagatggccaagtcccacggcctgtcctctgctcttccagaaccctgttcttctcactgacagcagcaagggcaaatccatgcagcatctcccgccatgacctccagtttgcagacagtaggtaccacaggtacttgacagtcac
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1838673 144 -   2461138 ctctagagggctgagtcccatagcctgtcctctactcttccagaaccctgttgtt----ctgacagcagggagggcaaatccatgtagcatctcccaacatgacctccggcctgcagaggagaggcgccacaggacctttacatgcac
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1041014 144 -   1280666 ctctagagggctgagtcccatggcctgtcctctactattccagaaccctgttgtt----ctgacagcagggagggcaaatccatgcagcatcttccgccatgacctccagcctgcagaggagaggcgccacaggacctttacatgcac
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             524536 144 -   1325925 ctctagagggctgagtcccacagcctgtcctctattcttccagaactctgttgtt----ctgacagcagggagggcaaatccatgtagcatctcccgccatgacctccggcctgcagaggagaggcgccacaggacctttacatgcac
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197973575 146 - 215897965 ctctagatGGCCaagtgccacggcctgtcctctactcttccagaaccctgttcttcc--ctgacagcagcgagggcaaatccatgcagcatctcccgccatgacctccagtttgcagacggtaggtaccacaggaacttgacagtcac
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3759661 148 -   3775709 ctctacatggccaagtcccacggcctgtcctctactcttccagaaccctgttcttctcactcacagcagcgagggcaaatccatgcagcatctcccgccatgacctccagtttgcagacggtaggtaccacaggaacttgacagtcac
i colAng1.NW_012114988v1          C 0 C 0
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=4037316.000000
s hg38.chr1_KI270711v1_random         40689 634 +     42210 gccgctgttcccctcacctgtgcatttcttaacgccttggtgaggagaatgtctctggatcttccTTGATGGGAGctaaaggaacaaaggtaaataatgctatgggacccactgagaactggggctgtggaagagtggccactgaagtaatagacagatgcagctattgccagatactcagtgccagagcagggagggacagggaagaaatacggacctcaccttcctctcactt-ccaggatccatcgggggccctccattgct-aaacctaactagaagtgtgcacgcaggggagccagggatgcattctaggagggacgagccccgagt---------ggcatgagacaggatggaaatgagtggacagtggatctgTGGGAAGAAGGA-GGGGATGTTAT-GGGAAAACAAAAGGAGAATACTAGCTAAGAACGCTAGGTGACATTAATATTCCGAAGTCTGTGCTCATATTCAGAAAAGAAAGTTCAGCATAAAGCACTAAATAAGGAGTCAAGATATTG-TACTTCCAACTGTTGTTCCAACAGCTGTATTATAAAGGGCCACTTTATTTCATGCCTTTCTAATTTGACCTAAAGTGCCAGGTGGCATTGGGGCTGGCACAGCCTTGCTCAATTATGTGTTG
s panTro5.chr1                    208029069 633 - 228573443 gccgctgttcccctcacctgtgcatttcttaacgccttggtgaggagaatgtctctggatcttccTTGATGGGAGCTAAAGGAACAAAGGTAA-TAATGCTATGGGACCCACTGAGAACTGGGGCTGTGGAAGAGTGGCCACTGAAGTAAtagacagatgcagctattgccagatactcagtgccagagcagggagagacagggaagaaatacggacctcatcttcctctcactt-ccaggctccatcaggtgccctccattgct-aaacctaactagaagtgtgcatgcaggggagccagggatgcattctagaagggacgagccccgagt---------ggcatgagacaggatggaaatgagcggacagtggatctgTGGGAAGAAGGA-GGGGATGTCAT-GGGGAAACAAAAGGAGAATACTAGCTAATAACGCTAGGTGACACTAATATTCCAAAGTCTGTGCCCATATTCAGAAAAGAAAATTCAGCATAAAGCACTAACCCAGGAGTCAAGATATTG-TACTTTCAACTGTGGTTCCAACAGCTGTATTATAAAGGGCCACTTTATTTCATGCCTTCCTAATTTGACCTAAAGTGCCAGGTGGCATTGGGGCTGGCACAGCCTTGCTCAATTATGTGTTG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208163840 637 - 229774977 gccgctgttcccctcacctgtgcatttcttaacgtcttggtgaggagaatgtctctggatcttccTTGATGGGAGctaaaggaacaaaggtaa-taatgctatgggacccactgagaactggggctgtggaagagtggccactgaagtaatagacagatgcagctattgccagatactcagtgccagagcagggagggagagggaagaaatacggacctcaccttcctctcacttcccaggctccatcaggtgccctccattgctaaaacctaactagaagtgtgcacgcaggggagccagggatgcattctagaagggacgagccccgagt---------ggcatgagacaggatggaaatgagtggacagtggatctgTGGGAAGGAGGAGGGGGATGTCATGGGGGAAACAAAAGGAGAATACTAGCTAATAACGCTAGGTGACACTAATATTCCAAAGTCTGTGCTCATATTCAGAAAAGAAAGTTCAGCATAAAGCACTAACCCAGGAGTCAAGATATTG-TACTTTCAACTGTGGTTCCAACAGCTGTATTATAAAGGGCCAGTTTATTTCATGCCTTCCTAATTTGACCTAAAGTGCCAGGTGGCATTGGGCCTGGCACAGCCTTGCTCAATTATGTGTTG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3833317 633 -   8455952 gccgctgtttccctcacctgtgcatttcttaatgtc-tggtaaggagaatgtctctggatcttccTTGATGGGAGctaaaggaacaaaggtaaataatgctatgggacccactgagaactggggctgtggaagagtggccactgaagtaatagacagatgcagctattgccagatactcagtgccagagcagggagggagagggaagaaatacggacctcaccttcctctcactt-ccaggctccatcaggtgccctccattgct-aaacctaactagaagtgtgcacgcaggggagccagggatgcattctagaagggacgagccccgagt---------ggcatgagacaggatggaaatgagtggacagtggatctgTGGGAAGAAGGA-GGGGATGTCAT-GGGGAAACAAAAGGAGAATACTAGCTAATAACGCTAGGTGACACTAATATTCCGAAGTCTGTGCTCATATTCAGAAAAAAAAGTTCAGCATAAAGCACTAACCCAGGAGTCAAGATATTG-GACTTTCAACTGTTGTTCCAACAGCTGTATTATAAAGGGCCAGTTTATTTCATGCCTTCCTAATTTGACCTAAAGTGCCAGGTGGCATTGGGGCTGGCACAGCCTTGCTCAATTATGTGTTG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    291110 629 +    297174 GCCGCTGTTCCCCTCACCTGTGCATTTCTTAATGCTTTGGTGAGGAGTATGTCTCTGGATCTTCCTTGGTGGGAGCTAAAGGAACAAAGGTAAATAATGGTATgggacccactgagaattggggctgtggaaaagtggccactgaagta--agac--atgcagctattgtcagatactcagtgccagagcagggagggagaggaaagaagtacagacctcacctgcctctcactt-ccaggctccatcaggtgccccccattgct-aaacctaactagaagtgtgcacgcaggggagccagggatgcattttagaaggg-taagccctgagt---------ggcataagacagaatggaaatgagtggagagtggatctgTGGGAAGGAGGA-GGGGATGTTAT-TGGGGAACAAAAGGAGAATACTAGCTAATAATGCTAGGTGACACTAATATTCCAAAGTCTGTGCTCATATTCAGAAAAGAAAGTTCAGCAGAAAGCACTAAACCAGGAGTCAAGATACTG-TATTTTCAACTGTTGTTCCAACAGCCATATTATAAAGGGCCAGTTTATTTCATGCGTTTCTAATTTGATCTAAAGTGCCAGGTGGCATTGGGGCTGGCACAGCCTTGCTCAATTATGTGTTG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103775035 631 - 225584828 gctcctgtttccctcacccatgcatttcttaatgccttggtgaggagaatatctctggatcttccttggTGGGAGctaaaggagcaaagataaataatgctatgggacccactgagaattggggctgtggaagagtggccactgaagtaatagacagatgtagctattgccagatactcagtgccggagcagggagggagaaggaagaaatacggacctcaccttcctctcactt-cta-------------gccccccattgct-aaacctaactagaagtgtgcacgcaggggagccagggatgcattctagaagggacaagccccgagtcccttctagagcataagacaggatggaaatgagtggagagtggatctgtggggAGGAGGA-GGGGATGTTAT-GGGGAAACAAAAGGAGAATACTAGCTAATAATGCTAGGTGACACTAATATCCCAAAGTCTGTGCTCGTATTCAGAAAAGGAAGTTCAGCATAAAGCACTCAACCAGGAGTCAAGATACTGTTACTTTCAACTGTTGTTCCAACAGCTGTATTATAATGGGCCAGTTTATTTCACGCCTTTCTAATTTGACCTAAAGTGCTGGGTGGCACTGGGGCTGGCACAGCCTTGCTCAATTATGTGTTG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211918561 634 + 227556264 gccactgttcccctcacccgtgcatttcttaatgccttggtgaggagaatgtttctggatcttccTTGATGGGAGctaaaggaacaaaggtaaacaatgctatgggacccactgagaattggggctatggaagagtgaccactgaagtaacagacagatgcagatattgccagatactcagtgccagagcagggagggagagggaagaaatacagacctcaccttcctctcactt-ccaggctccatcaggtgccctctattgct-aaacctaactagaagtatgtacgcaggggagccagggatgcattctagaagggacaagcaccaagt---------gacataagacaggatggaaatgagtggagagtggatctgTGGGAAGGAGGA-GGGGATGATAT-GGGGAAACAAAAGGAGAATACTAGCTAATAACGCTAGGTGACACTAACATTCCAAAGTCTGTGCTCATATTCAGAAAAGAAAGTTCAGCATAAAGTACTAAACCAGGAGTCAAGATACTG-TATTTTCAACTGCTGTTCCAACAGCTGTATTATAAAGGGCCAGTTTATGTCATGCCTTTCTAATTTGACCTAAAGTGCCAGGTGGCACTGGGGCTGGCACAGCCGTGCTCAATTATGTGTTG
i macFas5.chr1                    C 0 C 0
s cerAty1.NW_012001440v1            1838817 631 -   2461138 gctcctgtttccctcacccatgcatttcttaatgccttggtgaggagaatatctctggatcttccttggTGGGAGctaaaggagcaaagataaataatgctatgggacccaatgagaattggggctgtggaagagtggccactgaagtaacagacagatgcagctattgccagatactcagtgccggagcagggagggagaaggaagaaatacggacctcaccttcctctcactt-cta-------------gccccccattgct-aaacctaactagaagtgtgcacgcaggggagccagggatgcattctagaagggacaagccccgagtcccttctagagcgtaagacaggatggaaatgagtggagagtggatctgTGGGCAGGAGGA-GGGGATGTTAT-GGGGAAACAAAAGGAGAATACTAGCTAATAATGCTAGGTGACACTAATATCCCAAAGTCTGTGCTCGTATTCAGAAAAGGAAGTTCAGCATAAAGCACTCAACCAGGAGTCAAGATACTGTTACTTTCAACTGTTGTTCCAACAGCTGTATTATAATGGGCCAGTTTATTTCACGCCTTTCTAATTTGACCTAAAGTGCTGGGTGGCACTGGGGCTGGCACAGCCTTGCTCAATTATGTGTTG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1041158 617 -   1280666 actcctgtttccctcacccatgcatttcttaatgccttggtgaggagaatgtctctggatcttcTTTGGTGGGAGctaaaggaacaaagataaataatgctatgggacccactgagaattggggctgtggaagagtggccactgaagtaatagacagatgcagctattgcca--------------gagcagggagggagagggaagaaatacagacctcaccttcctctcactt-cta-------------gccccccattgct-aaacctaactagaagtgtgcacacaggggagccagggatgcattctagaagggacaagccccgagtcccttctagagcataagacaggatggaaatgagtggagagtggatctgtgggaaggacga-aGGCATGTTAT-GGGGAAACAAAAGGAGAATACTAGCTAACAACGCTAGGTGACACTAATATCCCAAAGTCTGTGCTAGTATTCAGAAAAGAAAGTTCAGCATAAAGCACTCAACCAGGAGTCAAGATACTGTTACTTTCAACTGTTGTTCCAACAGCTGTATTATAACAGGCCAGTTTATTTCATGCCTTTCTAATTTGACCTAAAGTGCTAGGCAGCATTGGGGCTGGCACAGCCTTGCTCAATTATGTGTTG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             524680 631 -   1325925 gctcctgtttccctcacccatgcatttcttaatgccttggtgaggagaatatctctggatcttccttggTGGGAGctaaaggagcaaagataaataatgctatgggacccactgagaattggggctgtggaagagtggccactgaagtaatagacagacgcagctattgccagatactcagtgccggagcagggagggagaaggaagaaatacggacctcaccttcctctcactt-cta-------------gccccccattgct-aaacctaactagaagtgtgcacgcaggggagccagggatgcattctagaagggacaagccctgagtcccttctagagcgtaagacaggatggaaatgagtggagagtggatctgTGGGCAGGAGGA-GGGGATGTTAT-GGGGAAACAAAAGGAGAATACTAGCTAATAATGCTAGGTGACACTAATATCCCAAAGTCTGTGCTCGTTTTCAGAAAAGGAAGTTCAGCATAAAGCACTCAACCAGGAGTCAAGATACTGTTACTTTCAACTGTTGTTCCAACAGCTGTATTATAACGGGCCAGTTTATTTCACGCCTTTCTAATTTGACCTAAAGTGCTGGGTGGCACTGGGGCTGGCACAGCCTTGCTCAATTATGTGTTG
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197973721 632 - 215897965 gccactgttcccctcatctgtgcatttcttaatgccttggtgaggagaatgtctctggatcttccTTGATGGGAGctaaaggaacaaaggtaaataatgctatgggacccactgagaattggggctatggaagagtgaccactgaagtaacagacagatgcagctattgccagatactcagtgccagagcagggagggagagggaagaaatacagacctcaccttcctctcactt-ccaggctccatcaggtgccccctgttgct-aaacctaactagaagtgtgtacgcaggggagccaaggatgcattctagaagggacaagcaccaagt---------ggcataagacaggatggaaatgagtggagagtggatctgT-GGAAACAGGA-GGGGATGCTAT-GGGGAAACAAAAGGAGAATACTAGCTAATAATTCCAGGTGACGCTAACATTTCAAAGTCTGTGCCCATATTCAGAAAA-GAAAGTCAGCATAAAGTACTAAACCAGGAGTCAAGATACTG-TATTTTCAACTGCTGTTCCAACAGCTGTATTATAAAGGGCCAGTTTATGTCATGCCTTTCTAATTTGACCTAAAGTGCCAGGTGGCATTGGGCTGGGCACAGCCTTGCCCAATTATGTGTTG
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3759809 633 -   3775709 gccactgttcccctcatctgtgcatttcttaatgccttggtgaggagaatgtctct-CATCTTCCTTGATGGGAGctaaaggaacaaaggtaaataatgctatgggacccattgagaactggggctatggaagagtgaccactgaagtaacagacagatgcagctattgccagatactcagtgccagagcagggagggagcgggaagaaatacagacctcaccttcctctcacgt-ctaggctccatcaggtgcctcccattgct-aaacctaactagaagtgtgtacgcaggggagccaaggatgcattctagaagggacaagcaccaagt---------ggcataagacaggatggaaattagtggagggtggatctgtgggaagcaGGA-GGGGATGTTAC-GGGGAAACAAAAGGAGAATACTAGCTCATAATGCTAGGTGACACTAACATTCCAAAGTCTGTGCTCATATTCAGAAAACAAAATTCAGCATCAAGTACTAAACCAGGAGTCAAGATACTG-TATTTTCAACTGCTGTTCCAACAGCTGTAGTATAAAGGGCCAGTTTATGTCATGCCTTTCTAATTTGACCCAAAGTGCCAGGTGGCATTGGGGCTGGCACAGCCTTGATCAATTATGTGTTG
i colAng1.NW_012114988v1          C 0 C 0
s rhiBie1.NW_016834071v1                 62 634 -      1016 gccactgttcccctcacctgtgcatttcttaatgccttggtgaggagaatgtctctggatcttccTTGATGGGAGctaaaggaacaaaggtaaataatgctatgggacccactgagaattggggctatggaagagtgaccactgaagtaacagacagatgcagctattgccagatactcagtgccagagcagggagggagagggaagaaatacagacctcaccttcctctcacgt-ccaggctccatcaggtgccccctgttgct-aaacctaactagaagtgtgtacgcaggggagccaaggatgcattctagaagggacaagcaccaagt---------ggcataagacaggatggaaatgagtggagagtggatctgtgagaagcaGGA-GGGGATGTTAT-GGGGAAACAAAAGGAGAATACTAGCTCATAATGCTAGGTGACACTAACATTCCAAAGTCTGTGCTCATATTCAGAAAAGAAAGTTCAGCATAAAGTACTAAACCAGGAGTCAAGATACTG-TATTTTCAACTGCTGTTCCAACAGCTGTATTATAAAGGGCCAGTTTATGTCATGCCTTTCTAATTTGACCTAAAGTGCCAGGTGGCATTGGGTTTGGCACAGCCTTGCTCAATTATGTGTTG
i rhiBie1.NW_016834071v1          N 0 C 0
e macNem1.NW_012017688v1           11420287   0 -  14060431 C

a score=2369347.000000
s hg38.chr1_KI270711v1_random         41323 317 +     42210 CAGAGTACACAGAGACTGCCAGGCTGAGGGAAGATGCAAGAGAAT-----AGAAGAGATGCTCTCAGGGAACAAGAGACCACAT-GGCCCCAGAGTCAGGGGCAGCATCAGCCACTGTCAGCTGCTCATTTTCCCAGACAGAGCCCACAAGCCTCAGCCATGCTTTGCTTCTGCAAGACGCTTCTTCACCTTTTCAATAAACCTGCCTGAATTTAAGCTGAC-AGGGTTTATTTCTCCTTCATCATAAATGAAATTCTTCACCACAACAATCTCCAATGAATTTTGGGCACAGCAGGCAGGCCCATTTCTGCTTCTGTTCCACT
s panTro5.chr1                    208029702 318 - 228573443 CAGATTATACAGAGACTGCCAGGCTGAGGGAAGATGCAAGAGAAT-----AGAAGAGATGCTCTCAGGGAACAAGAGACCACAT-GGTCCCAGAGTCAGGGGCAGCATCAGCCACTGTCAGCTGCTCATTTTCCCAGACAGAGCCCGCAAGCCTCAGCCATGCTTTGCTTCTGCAAGACGCTTCTTCACCTTTTCAATAAACCTGCCTGAATTTAAGCTGACGGGGGTTTAATTCTCCTTCATCATAAATGAAATTCTTCACCGCAACCATCTCCAATGAATTTTGGGCACAGCAGGCAGGCCCATTTCTGCTTCTGTTCCACT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208164477 314 - 229774977 AAGATTATACAGAGACTGCCAGGCTGAGGGAAGATGCAAGAGAAT-----AGAAGAGATGCTCTCAGGGAACAAGAGACCACAT-GGTCCCAGAGTCAGGGGCAGCATCAGCCACTGTCAGCTGCTCATTTTCC----CAGAGCCCACAAGCCTCAGCCACGCTTTGCTTCTGCAAGACGCTTCTTCACCTTTTCAATAAACCTGCCTGAATTTAAGCTGACGGGGGTTTAATTCTCCTTCATCATAAATGAAATTCTTCACCACAACCATCTCCAATGAATTTTGGGCACAGCAGGCAGACCCATTTCTGCTTCTGTTCCACT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3833950 315 -   8455952 AAGATTATACAGAGACTGTCAGGCTGAGGGAAGATGCAAGAGAAT-----AGAAGAGATGCTCTCAGGGAACAAGAGACCACATCGGTCCCAGAGTCAGGGGCAGCATCAGCCACTGTCAGCTGCTCATTTTCT----CAGAGCCCACAAGCCTCAGCCATGCTTTGCTTCTGCAAGACGCTTCTTCACCTTTTCAATAAACCTGCCTGAATTTAAACTGACGGGGGTTTAATTCTCCTTCATCATAAATGAAATTCTTCACCGCAATAATCTCCAGTGAATTTTGGGCACAGCAGGCAGGCCCATTTCTGCTTCTGTTCCACT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    291739 317 +    297174 AAGAGTACACAGAGACTGCCAGGCTGAGGGAAGACGCAAGAGAAT-----ACAAGAGATGCTCTCAGGGAACAAGAAACCACAC-GGCCCCAGAGGCAGGGGCAGCATCAGCCACTGTTGGCTGTTCATTTCCC-AGACAGAGCCCACAAGCCTCAGCCATGCTTTGCTTCTGCAAGATGCTTCTTCACCTTTTCAATAAACCTGCCTGAATTTAAGCTGATAGGGGTTTATTTCTCCTTCGTCATAAATGAAATTTTTCACCGCAACAATCTCCAATGAATTGTGGGCACAGCAGGCAGGTGCATCCCTGCTTCTGTTCCACT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103775666 318 - 225584828 AAGAGTATACAGAGACTGCCAGGCTGAGGGAAGATGCAAGAGAAG-----AGAAGAGATGCTCTCAGGAAACAACAGACCACAC-GGCCCCAGAGTCAGGGGCAGCATCAGCCACTGTCGGCCACTCATTTTCCCAGACAGAGCCCACAAGCCTCAGCCATGCTTTGCTTCTGCAAGATGCTGCTTCAGCTTTTCAATAAACCTGCCTGAATTTAAGCTGACGGGGGTTTATTTCTCCTTCATCATAAATGAAATTCTTCACCACAACAATCTCCAATGAATTGTGGGCACAGCAGGCAGGCCCATCCCTGCTTCTGTTCCACT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211919195 316 + 227556264 GAGAGTACACAGAGACTGCCAGGCTGAGGGAAGACACAAGAGAAT-----AGAAGAGATGCTCTCAGGGAACGAGAGACCACAC-GGCCCCAGAGTCA-GGGCAGCATCAGCCACTGTCGGCTGCTCATTTTCCCAGACACAGCCCACAAGCCTCAGCCATGCTGTGCTT-TGCAAGACGCTTCTTCACCTTTTCAATAAACCTCCCTGAATTGAAGCTGACGGGGGTTTATTTCTCCTTCATCATCAATGAAATTCTTCACCGCAACAATCTCCAATGAATTTTGGGCACAGCAGGCAGGCCCATCCCTGCTTCTGTTCCACT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11420287 317 -  14060431 CAGAGTATACAGAGACTGCCAGGCTGAGGGAAGATGTAAGAGAAT-----AGAAGAGATGTTCACAGGGAACAACAGACCACAC-GGCCCCAGAGTCAGGGGCAGCGTCAGCCACTGTCAGCTGCTCATTTTCCCAGACAGAGCCCACAAGCCTCAGTCATGCTTTGCTTCTGCAAGATGCTTCTTCAGCTTTTCAACAAACCTGCCTGAATTTAAGCTGAT-GGAGTTTATTTCTCCTTCATCATAAATGAAATTCTTCACCACAACAATCTCCAATGAATTGTGGGCACAGCAGGCAGGCCCATCCCTGCTTCTGTTCCACC
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1839448 323 -   2461138 AAGAGTATACAGAGACTGCCAGGCTGagggaagatgcaagagaatagaagagaagagaTGCTCTCAGGAAACAACAGACCACAC-GGCCCCAGAGTCAGGGGCAGCATCAGCCACTGTCAGCTGCTCATTTTCCCAGACAGAGCCCACAAGCCTCAGCCATGCTTTGCTTCTGCAAGATGCTGCTTCAGCTTTTCAATAAACCTGCCTGAATTTAAGCTGACGGGGGTTTATTTCTCCTTCATCACAAATGAAATTCTTCACCACAACAATCTCCAATAAATTGTGGGCACAGCAGGCAGGCCCATCCCTGCTTCTGTTCCACT
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1041775 318 -   1280666 AAGAGTATACAGAGACTGCCAGGCTGAGGGAAGACGCAAGAGAAT-----AGAAGAGATGCTCTCAGGGAACAACAGACCACAA-GGCCCCAGAGTCAGAGGCAGCACCAGCCACTGTCGGCTGCTCATTTTCCCAGACAGAGCCCACAAGCCTCAGCCATGCTTTGCTTCTGCAAGATGCTTCTTCATCTTTTCAATAAACCTGCCTGAATTTAAGCTGATGGGGGTTTATTTCTCCTTCATCATAAATGAAATTCTTCACCACAACAATCTCCAATGAATTGTGGGCACAGCAGACAGGCCCATCCCTGCTTCTGTTCCACC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             525311 318 -   1325925 AAGAGTATACAGAGACTGCCAGGCTGAGGGAAGATGCAAGAGAAG-----AGAAGAGATGCTCTCAGGAAACAACAGACCACAT-GGCCCCAGAGTCAGGGGCAGCATCAGCCACTGTCAGCTGCTCATTTTCCCAGACAGAGCCCACAAGCCTCAGCCATGCTTTGCTTCTGCAAGATGCTGCTTCAGCTTTTCAATAAACCTGCCTGAATTTAAGCTGACAGGGGTTTATTTCTCCTTCATCATAAATGAAATTCTTCACCACAACAATCTCCAATGAATTGTGGGCACAGCAGGCAGGCCCATCCCTGCTTCTGTTCCACT
i manLeu1.NW_012105087v1          C 0 C 0
s nasLar1.chr1                    197974353 295 - 215897965 GAGAGTACACAGAGACTGCCAGGCTGAGGGAAGACACAAGAGAAC-----AGAAGAGATGCTCTCAGGGAAGAAGAGACCACAC-GGCCCCAGAGTCA----------------------GCTGCTCATTTTCCCAGACAGAGCCCACAAGCCTCAGCCATGCTGTGCTT-TGCAAGACGCTTTTTCACCTTTTCAATAAACCTGCCTGAATTGAAGCCGATGGGGGTTTATTTCTCCCTCATCATCAATGAAATTCTTCACCGCAACAATCTCCAGTGAATTTTGGGCATAGCAGGCAGGCCCATCCCTGCTCCTGTTCCACT
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3760442 317 -   3775709 GAGAGTACACAGAGACTGCCAGGCTGAGGGAAGACATAAGAGAAC-----AGAAGAGATGCTCTCAGGGAAGAAGAGACCACAC-GGCCCCAGAGTCAGGGGCAGCATCAGCCACTGTCGGATGCTCATTTTCCCAGACAGAGCCCACAAGCCTCAGCCATGCTGTGCTT-TGCAAGACGCTTCTTCACTTTTTCAATAAACCTGCCTGAATTGAAGCTGACGGGGATTTATTTCTCCTTCATCATCAACGAAATTCTTCACCGCAACAATCTCCAATGAATTTTGGGCACAGCAGGCAGGCCCATCCCTGCTTCTGTTCCACT
i colAng1.NW_012114988v1          C 0 C 0
s rhiBie1.NW_016834071v1                696 317 -      1016 GAGAGTACACAGAGACTGCCAGGCTGAGGGAAGACACAAGAGAAT-----AGAAGAGATGCTCTCAGGGAACAAGAGACCACAC-AGCCCCAGAGTCAGGGGCAGCATCAGCCACTGTCGGCTGCTCATTTTCCCAGACAGAGCCCACAAGCCTCAGCCATGCTGTGCTT-TGCAAGACGCTTCTTCACCTTTTCAATAAACCTGCCTGAATTGAAGCCGACGGGGGTTTATTTCTCCTTCATCATCAATTAAATTCTTCACCGCAACAATCTCCAGTGAATTTTGGGCACAGCAGGCAGGCCCATCCCTGCTCCTGTTCCACT
i rhiBie1.NW_016834071v1          C 0 N 0

a score=2537311.000000
s hg38.chr1_KI270711v1_random         41640 395 +     42210 ATCTCtcctgtaggttgaaaaggaggaggtactgaattacctccaaatgttcctctggctctgatattctgttattctGGTTCCTTTTTGGCTACTTTGTTTTTGGTAGCGTGTATCCTAAGGCGTCCAGTTGAACAACTTTTGTCTACTGTGTCCAGGCATTCCTGGTGGTATTTCAGATAAGACTCTCTTGGGTTGCTGAACTCACAACCACTGAACCAATTCTATGACCATCTGTTTCATGGCCACATGTTTGCTCATTTTATATGTACATAAAGGGAGGGGACAGACAGCAAACTTGCGTGTTACAAATTGTATCATCTTAAAAAGGAAACAAGG--CAACACTTTGCAATAAAACCTTAAGATGCATGAAATTTGAGCCTAATGCAATAAAG
s panTro5.chr1                    208030020 395 - 228573443 ATCTCCcctgtaggttgaaaaggaggaggtactgaattacctccaaatgttcctctggctctgatattctgttattctGGTTCCTTTTCAGCTACTTTGTTTTTGGTAGCGTGTATCCTAAGGCATCCAGTTGAACAACCTTTGTCTACTGTGTCCAGGCATTCCTGGTGGTATTTCAGATAAGACACTCTTAGGTTGCTGAACTCACAACCACTGAACCAATTCTATGACCATCTGTTTCATGGCCACATGTTTGCTCATTTTATATGTATATAAAGGGAGGGGACAGACAGCAAACTTGCATGTTATAAATTATATCATCTTAAAAAGGAAACAAGG--CAACACTTTGCAATAAAACCTTAAGATGCATGAAATTTAAGCCTAATGCAATAAAG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208164791 395 - 229774977 ATCTCCcctgtaggttgaaaaggaggaggtactgaattacctccaaatgttcctctggctctgatattctgttattctGGTTCCTTTTCAGCTACTTTGTTTTTGGTAGCGTGTATCCTAAGGCATCCAGTTGAACAACCTTTGTCTACTGTGTCCAGGCATTCCTGGTGGTATTTCAGATAAGACACTCTTGGGTTGCTGAACTCACAACCACTGAACCAATTCTATGACCATCTGTTTCATGGCCACATGTTTGCTCATTTTATATGTATATAAAGGGAGGGGACAGACAGCAAACTTGCATGTTATAAATTATATCATCTTAAAAAGGAAACAAGG--CAACACTTTGCAATAAAACCTTAAGATGCATGAAATTTAAGCCTAATGCAATAAAG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3834265 397 -   8455952 ATCTCCcctgtaggttgaaaaggaggaggtactgaattacctccaaatgttcctctggctctgatattctgttattctGGTTCCTTTTCAGCTACTTTGTTTTTGGTAGCGTGTATCCTAAGGCGTCCAGTTGAACAACCTTTGTCTACTGTGTCCAGGCATTCCTGGTGGTATTTCAGATAAGACACTCTTGGGTTGCTGAACTCACAACCACTGAACCAATTCTATGACCATCTGTTTCATGGCCACATGTTTGCTCATTTTATATGTACATAAAGGGAGGGGACAGACAGCAAACTTGCATGTTATGAATTATATCATCTTAAAAAGGAAGCAAGGCACAACACTTTGCAATAAAACCTTAAGATGCATGAAATTTAAGCCTAATGCAATAAAG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    292056 395 +    297174 ATCTCCcctgtaggttgaaaaggaggaggtactgaattacctccaaatgttcctctcgctctgatattctgtgattctGGTTTCTTTTCAGCTACATTGTTTTTGGAAGCATGTATCCTGAGGCATCCAGTTGAACAAACTTTGTCTACTGTGTCCAGGCATTCCTGGTGGTATTTCAGACAAGACTTTCTGGGGTTGCTGCACTCACAACCACTGAACCAATTCTATGACCATCCTTTTCATGGCCACATGTTTGCTCATTTTGTGTGTACACAAAGGGAGGGGACAGACAGCAAACTTGCATGTTATAAATTGTATCATCTTAAAAAGGAAACAAGG--CAACACTTTGCAATAAAACCTTAAGATGCATTAAATTTAAGCCTAATGCAATAAAG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103775984 395 - 225584828 ATCTCCCCTGTAGGTTGAAAAGAAGGAGGTACTGAATTACCTCCAAATGTTCCTCTGGCTCTGATAATCTGTTATTCTGGTTTCTCTTCAGCTACTTTGTTTTTGGAAGCATGTGTCCTAAGGCGTCCGGTTGAACCACCTTTGTCTACTGTGTCCAGGCATTCCTGGTGGTATTTCAGATAAGACACTCTTGGGTTACTGTACTCACAACCTCTGAACCAATTCTATGACCATCTGTTTCATGGCCACATGTTTGCTCATTTTCTATGTACATAAAGGGAAGGGACAGACAGCAAACTTGCATGTTATAAATTGTATCATCTTAAAAAGGAAACAAGG--CAAGACTTTGCAATAAAACCTTAAGATGCATTAAATTTAAGCCTAATGCAATAAAG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211919511 395 + 227556264 ATGTCCcctgtagcttgaaaaggaggacgtactgaactaccaccaaatgttcctctggctctgatattccgttattctGGTTTCTTTTTGGCTACTTTGTTTTTGGAAGCATGCATCCTAAGGCATCCAGTTGAACAAACTTTCTCTACTGTGTCCAGGCATTCCTGGTGGGATTTCAGATAAGACACTCTTGGGTTGCTACACTCACAACCACTGAACCAATTCTATGACCATCTGTTTCATGGCCACATGTCTGTTCATTTTATACGAACATAAAGGGAGAGGACAGACAGCAAACTCGCATGTTATAAATTGTACCATCTTAAAAAGGAAATAAGG--CAACACTTTACGATAAAACCTTAAGATGCATTAAATTTAAGTCTAATGCAATAAAG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11420604 395 -  14060431 ATCTCCCCTGCAGGTTGAAAAGGAGGAGGTACTGAATTACCTCCAAATGTTCCTCTGGCTCTGATGGTCTGTTATTTTGGTTTCTTTCTGGCTACTTTGTTTTTGGAAGCATGTTTCCTAAGGCGTCCGGTTGAACCACCTTTGTCTATTGTGTCCAGGCATTCCTCACAGTATTTCAGATAAGACACTCTTGGGTTGCTGTACTCACAACCACTGAACCAATTCTATGACCATCTGTTTCATGGCCACATGTTTGCTCATCTTATATGTATATAAAGGGAGGGGACAGACAGCAAACTTGCATGTTATAAATTGTATCATCTTAAAAAGGAAACAAGG--CAACACTTTGCAATAAAACCTTAAGATGCATTAAATTTAAGCCTAATGCAATAAAG
i macNem1.NW_012017688v1          C 0 C 0
s cerAty1.NW_012001440v1            1839771 395 -   2461138 ATCTCCCCTGTAGGTTGAAAAGAAGGAGGTACTGAATTACCTCCAAATGTTCCTCTGGCTCTGATAATCTGTTATTCTGGTTTCTCTTCAGCTACTTTGTTTTTGGAAGCATGTGTCCTAAGGCGTCCGGTTGAACCACCTTTGTCTACTGTGTCCAGGCATTCCAGGCGGTATTTCAGAAAAGACACTCTTGGGTTACTGCACTCACAACCTCTGAACCAATTCTATGACCATCTGTTTCATGGCCACATGTTTGCTCATCTTATATGTACATAAAGGGAGGGGACAGACAGCAAACTTGCATGTTATAAATTGTATCATCTTAAAAAGGAAACAAGG--CAAGACTTTGCAATAAAACCTTAAGATGCATTAAATTTAAGCCTAATGCAGTAACG
i cerAty1.NW_012001440v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1042093 395 -   1280666 ATCTCCCCTGTAGGTTGAAAAGGAGGAGGTACTGAATTACCTCCGAATGTTCCTCTGGCTCTGATGGTCTGTTATTCTGGTTTCTTTTCAGCTACTTTGTTTTTGGAAGCATGTGTCCTAAGACGTCCGGTTGAACCACCTTTGTCTACTGTGTCCAGGCATTCCTGGTGGGATTTCAGGTAAGACACTCTTGGGTTACTGCACTCACAACCACTGAACCAATTCTACGACGAGCTGTTTCATGGCCACATGTTTGCTCATTTTTTATGTACATAAAGGGAGGGGACAGACAGCAAACTTGCATGTTATAAACTGTATCATCTTAAAAAGGAAACAAGG--CAACACTTTGCAATAAAACCTTAAGATGCATTAAATTTAAGCCTAATGCAATAAAG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s manLeu1.NW_012105087v1             525629 394 -   1325925 ATCTCCCCTGTAGGTTGAAAAGAAGGAGGTACTGAATTACCTCCAAATGTTCCTCTGGCTCTGATGGTCTGTTATTCTGGTTTCTTTCTGGCTACTTTGTTTTTGGAAGCATGTGTCCTAAGGCGTCCGGTTGAACC-CCTTTGTCTACTGTGTCCAGGCATTCCTGGTGGTATTTCAGATAAGACACTCTTGGGTTACTGCACTCACAACCTCTGAACCAATTATATGACCATCTGTTTCATGGTCACATGTTTGCTCATCTTATATGTACATAAAGGGAGGGGACAGACAGCAAACTTGCATGTTATAAATTGTATCATCTTAAAAAGGAAACAAGG--CAAGACTTTGCAATAAAACCTTAAGATGCATTAAATTTAAGCCTAATGCAATAAAG
i manLeu1.NW_012105087v1          C 0 N 0
s nasLar1.chr1                    197974648 389 - 215897965 GTGTCGcctgtagcttgaaaagcaggacgtactgaactaccaccaagtgttcctccgactctgatattctgttattctGGTTTCTTTTTGGCTCCTTTGTTTTTGGAAGCA----TCCTAAGGAGTCTAGTTGAACAAACTTTGTCTACTGTGTCCAGGCATTCCTGGTGGGATTTCAGATAAGACACTC--GAGTTGCTGCACTCACAACCACTGAACCAATTCTACGACCATGTGTTTCATGGCCACATGTTTGTTCATTTTATATGTACATAAAGGGAGGAGACAGACAGCAAACTTCCATGTTATAAATTGTATCATCTTAAAAAGGAAACAAGG--AAACACTTTGCAATAAAACGATAAGATGCTTTAAATTTAAGCTTAATGCCATCAAG
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3760759 395 -   3775709 GTGTCCCCTGTAGCTTGAAAAGGAGGACGTACTGAACTACCACCAAATGTTCCTCTGGCTCTGATATTCTATTATTCTGGTTTCTTTTTGACTACTTTGTTTTTGGAAGCAGGCTTCCTAAGGCATCCAGTTGAACAAACTTTGTCTACTGTGTCCAGGCATTCCTGGTGGCATTTCAGATAAGACACTCTTGGGTTGCTGCACTCACAACCACTGAACCAATTCTGTGACCATCTGTTTCATGGCCACATGTTTGTTCATTTTATATGTACATAAAGAGAAGGGACAGACAGCAAACTTCCATGTTATAAACTGTATCATCTTAAAAAGGAAACAAGG--CAACACTTTGCAATAAAACCATAAGATGCTTTAAATTTAAGCTTAATGCAATCAAG
i colAng1.NW_012114988v1          C 0 C 0

a score=271342.000000
s hg38.chr1_KI270711v1_random         42035 52 +     42210 GATGCCCATAAAATTCTTATCTAAAGAATGTTTCGAAAATTGTTGTACAA-GG
s panTro5.chr1                    208030415 52 - 228573443 AATGCCCATTAAATTTTTATCTAAAGAATGTTTCGAAAATTGTTGTACAA-GG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208165186 52 - 229774977 AATGCCCATTAAATTTTTATCTAAAGAATGTTTCGAAAATTGTTGTACAA-GG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3834662 52 -   8455952 AATGCCCATTAAATTCTTATCTAAAGAATGTTTAGAAAATTGTTATACAA-GG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    292451 53 +    297174 AATGCCCATAAAATTCTTATCTAAAGAATGCTTAGAAAATTGTTAAACAAGGG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103776379 52 - 225584828 AATACCCATAAAATTCTTATCTAAAGAATGCTTAGAAAACTGTTGAACAA-GG
i rheMac8.chr1                    C 0 I 1
s macFas5.chr1                    211919906 52 + 227556264 AATGCCCATAAAATTCCTATTTAAAGAATGTTTAGAAAATTGTTGAACAA-TG
i macFas5.chr1                    C 0 I 1
s macNem1.NW_012017688v1           11420999 52 -  14060431 AATACCCATAAAATTCTTATCTAAAGAATGCTTAGAAAACTGTTGAACAA-GG
i macNem1.NW_012017688v1          C 0 I 1
s cerAty1.NW_012001440v1            1840166 52 -   2461138 AATGCCCATAAAATTCTTATCTAAAGAATGCTTAGAAAACTGTTGAACAA-GG
i cerAty1.NW_012001440v1          C 0 N 0
s chlSab2.chr20_KE148050v1_random   1042488 52 -   1280666 AATGCCCATAAAATTCTTATCTAAAGAATGTTTAGAAAACTGTTGAACAA-GG
i chlSab2.chr20_KE148050v1_random C 0 I 1
s nasLar1.chr1                    197975037 52 - 215897965 AATGCCCATAAAATTCCTATCTAAAGAATGTTTAGAAAATTGCTGAACAA-GG
i nasLar1.chr1                    C 0 I 1
s colAng1.NW_012114988v1            3761154 52 -   3775709 AATGCCCATAAAATTCCTATCTAAAGAATGTTTAGAAAATTGCTGAACAA-GG
i colAng1.NW_012114988v1          C 0 I 1

a score=257408.000000
s hg38.chr1_KI270711v1_random         42087 56 +     42210 ACATCATCATTTAAAGTGATATGAAGAAACCTTCTCAGCTAAGCATATGGGCTAGA
s panTro5.chr1                    208030467 55 - 228573443 ACATCATCATTTAAAGTGATATGAAGAAACCTTCTCAGCT-AGCATATGGGCTAGA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208165238 55 - 229774977 ACATCATCATTTAAAGTGATATGAAGAAACCTTCTCAGCT-AGCATATGGGCTAGA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3834714 55 -   8455952 ACATCATCATTTAAAGTGATATGAAGAAACCTTCTCAGCT-AACATATGGGCTAGA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    292504 56 +    297174 ACATCATCATTTGAAGTGATATGAAGAAACCTCCTTAGCTAAGCATATGGGCTAGA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103776432 56 - 225584828 ACATCATCATTTAAAGTGATATGAAGAAATCTTCTCAGCTAAGCACATGGGCTAGA
i rheMac8.chr1                    I 1 C 0
s macFas5.chr1                    211919959 56 + 227556264 ACATCATCATTTAAAGTGATATGAAGAAATCTTCTCAGCTAAACATATGGGCTAGG
i macFas5.chr1                    I 1 C 0
s macNem1.NW_012017688v1           11421052 56 -  14060431 ACATCATCATTTAAAGTGATATGAAGAAACCTTCTCAGCTAATCATATGGGGTAGA
i macNem1.NW_012017688v1          I 1 C 0
s chlSab2.chr20_KE148050v1_random   1042541 56 -   1280666 ACATCATCATTTAAAGTGATATGAAGAAATCTTCTCAGCTAAGCATATGGGCTAGA
i chlSab2.chr20_KE148050v1_random I 1 C 0
s nasLar1.chr1                    197975090 56 - 215897965 ACATCATCATTTAAAGCGATACGAAGAAACCTTCTCAGCTAAGCATATGGGCTAGG
i nasLar1.chr1                    I 1 C 0
s colAng1.NW_012114988v1            3761207 56 -   3775709 ACATCATCATTTAAAGTGATATGAAGAAACCTTCTCAGCTAAGCATATGGGCTAGG
i colAng1.NW_012114988v1          I 1 C 0

a score=21282.000000
s hg38.chr1_KI270711v1_random         42143 4 +     42210 TTAG
s panTro5.chr1                    208030522 4 - 228573443 TTAG
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208165293 4 - 229774977 TTAG
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3834769 4 -   8455952 TTAG
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    292560 4 +    297174 TTAG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103776488 4 - 225584828 TTAG
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211920015 4 + 227556264 TTAG
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11421108 4 -  14060431 TTAG
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1042597 4 -   1280666 TTAG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chr1                    197975146 2 - 215897965 TT--
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3761263 4 -   3775709 TTAG
i colAng1.NW_012114988v1          C 0 C 0
s eulMac1.LGHX01003290v1             235267 4 -    379644 TTAG
i eulMac1.LGHX01003290v1          N 0 I 14
s eulFla1.LGHW01003327v1             235981 4 -    380747 TTAG
i eulFla1.LGHW01003327v1          N 0 I 14

a score=42728.000000
s hg38.chr1_KI270711v1_random         42147 10 +     42210 AGAGAAAAAT
s panTro5.chr1                    208030526 10 - 228573443 AGAGAGAAAT
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208165297 10 - 229774977 AGAGAGAAAT
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3834773 10 -   8455952 AGAGAGAAAT
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    292564 10 +    297174 AGAGAAAAAT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103776492 10 - 225584828 AGAGAAAAAT
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211920019 10 + 227556264 AGAGAAAGAT
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11421112 10 -  14060431 AGAGAAAAAT
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1042601 10 -   1280666 AGAGAAAAAT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chr1                    197975148  8 - 215897965 --AGAAAGAT
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3761267 10 -   3775709 AGAGAAAGAT
i colAng1.NW_012114988v1          C 0 C 0
e eulFla1.LGHW01003327v1             235985 14 -    380747 I
e eulMac1.LGHX01003290v1             235271 14 -    379644 I

a score=17661.000000
s hg38.chr1_KI270711v1_random         42157 3 +     42210 AAA
s panTro5.chr1                    208030536 3 - 228573443 AAA
i panTro5.chr1                    C 0 C 0
s panPan2.chr1                    208165307 3 - 229774977 AAA
i panPan2.chr1                    C 0 C 0
s gorGor5.CYUI01015145v1            3834783 3 -   8455952 AAA
i gorGor5.CYUI01015145v1          C 0 C 0
s nomLeu3.chr24_GL397604_1_random    292574 3 +    297174 AAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103776502 3 - 225584828 AAA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211920029 3 + 227556264 AGA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11421122 3 -  14060431 AAA
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1042611 3 -   1280666 AAA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chr1                    197975156 3 - 215897965 AGA
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3761277 3 -   3775709 AGA
i colAng1.NW_012114988v1          C 0 C 0
s eulMac1.LGHX01003290v1             235285 3 -    379644 AAA
i eulMac1.LGHX01003290v1          I 14 N 0
s eulFla1.LGHW01003327v1             235999 3 -    380747 AAA
i eulFla1.LGHW01003327v1          I 14 N 0

a score=215329.000000
s hg38.chr1_KI270711v1_random         42160 47 +     42210 GGACCCATCTCTGCCCTGGAAAAACTGCTGGTAGCATCTTTCAAAAA
s panTro5.chr1                    208030539 47 - 228573443 CAACCCATCTCTGCCCTGGAAAAACTACTGGTGGCATCTTTCAAAAA
i panTro5.chr1                    C 0 N 0
s panPan2.chr1                    208165310 47 - 229774977 CAACCCATCTCTGCCCTGGAAAAACTACTGGTGGCATCTTTCAAAAA
i panPan2.chr1                    C 0 N 0
s gorGor5.CYUI01015145v1            3834786 47 -   8455952 CGACCCATCTCTGTCCTGGAAAAACTACTGGTGGCATCTTTCAAAAA
i gorGor5.CYUI01015145v1          C 0 N 0
s nomLeu3.chr24_GL397604_1_random    292577 47 +    297174 GGACCCATCTCTTCCCTGGAAAAACTACTGATAGCATCTTTCAAAAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac8.chr1                    103776505 47 - 225584828 AGACCCATCTCTGCCCTGGAAAAACTACTGGTAGCATCTCTCAGAAA
i rheMac8.chr1                    C 0 C 0
s macFas5.chr1                    211920032 47 + 227556264 GGACCCATCTCTGCCCTGGAAAAACTACTGGTAGCATCTTTCAAAAA
i macFas5.chr1                    C 0 C 0
s macNem1.NW_012017688v1           11421125 47 -  14060431 GGACCCATCTCTGCCCTGGAAAAACTACTGGTAGCATCTTTCAGAAA
i macNem1.NW_012017688v1          C 0 C 0
s chlSab2.chr20_KE148050v1_random   1042614 47 -   1280666 GGACCCATCTCTGCCCTGGAAAAACTACTGGTAGCATCTTTCAGAAA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chr1                    197975159 46 - 215897965 GGACCCATCTCTGCCCTGG-AAAACTACTGGTAGCATCTTTGAAAAA
i nasLar1.chr1                    C 0 C 0
s colAng1.NW_012114988v1            3761280 47 -   3775709 GGACCCATCTCTACCCTGGAAAAACTACTGGTAGCATCTTTCAAAAA
i colAng1.NW_012114988v1          C 0 C 0

a score=8148.000000
s hg38.chr1_KI270711v1_random         42207 3 +     42210 GCT
s nomLeu3.chr24_GL397604_1_random    292624 3 +    297174 GCT
i nomLeu3.chr24_GL397604_1_random C 0 N 0
s rheMac8.chr1                    103776552 3 - 225584828 GCT
i rheMac8.chr1                    C 0 N 0
s macFas5.chr1                    211920079 3 + 227556264 GCT
i macFas5.chr1                    C 0 N 0
s macNem1.NW_012017688v1           11421172 3 -  14060431 GCT
i macNem1.NW_012017688v1          C 0 N 0
s chlSab2.chr20_KE148050v1_random   1042661 3 -   1280666 GCT
i chlSab2.chr20_KE148050v1_random C 0 N 0
s nasLar1.chr1                    197975205 3 - 215897965 GCT
i nasLar1.chr1                    C 0 N 0
s colAng1.NW_012114988v1            3761327 3 -   3775709 GCT
i colAng1.NW_012114988v1          C 0 N 0

